ID expr.6.4.exp_090507.CEL expr.6.4.exp_150607.CEL expr.6.5.exp_090507.CEL expr.6.5.exp_150607.CEL expr.6.7.exp_1_040507.CEL expr.6.7.exp_150607.CEL expr.7.2.exp_1_040507.CEL expr.7.2.exp_150607.CEL expr.6.4.3_exp160807.CEL expr.6.4.4_exp160807.CEL expr.6.5.11_exp160807.CEL expr.6.5.2_exp160807.CEL expr.6.5.6_exp160807.CEL expr.6.5.8_exp160807.CEL expr.6.7.19_exp160807.CEL expr.6.7.20_exp160807.CEL expr.6.7.21_exp160807.CEL expr.6.7.22_exp160807.CEL expr.7.2.1_exp160807.CEL se.expr.6.4.exp_090507.CEL se.expr.6.4.exp_150607.CEL se.expr.6.5.exp_090507.CEL se.expr.6.5.exp_150607.CEL se.expr.6.7.exp_1_040507.CEL se.expr.6.7.exp_150607.CEL se.expr.7.2.exp_1_040507.CEL se.expr.7.2.exp_150607.CEL se.expr.6.4.3_exp160807.CEL se.expr.6.4.4_exp160807.CEL se.expr.6.5.11_exp160807.CEL se.expr.6.5.2_exp160807.CEL se.expr.6.5.6_exp160807.CEL se.expr.6.5.8_exp160807.CEL se.expr.6.7.19_exp160807.CEL se.expr.6.7.20_exp160807.CEL se.expr.6.7.21_exp160807.CEL se.expr.6.7.22_exp160807.CEL se.expr.7.2.1_exp160807.CEL Chr ChrList StrandList From.Min From.Max From.Mean start end strand type Note isChr5 isClean IDlist Short.description Currator.summary Description logFC t P.Value adj.P.Val B A M M.se
AT3G16670_at 10.5592155823743 10.5663194161630 2.93150681854914 3.12192027237412 3.20985345791683 3.62953667059365 8.57606225971434 8.59862933945175 7.67007749745681 6.31631910295705 3.97923225148292 10.0217103160498 3.07827138274232 3.68835187027739 9.34211807501798 2.46376205428759 4.12215787619764 3.72948424938252 7.02358307422864 0.384159064341538 0.386027975135638 0.377130827350739 0.375592585059119 0.372940861565905 0.372940861565905 0.378233562229264 0.380939082751446 0.387002380490511 0.378447949821754 0.374305830538303 0.383126345600439 0.379310973539665 0.372940861565905 0.379605380602977 0.380375277751615 0.377296215388253 0.385618678472714 0.37635567815129 3 3 + 5681522 5682038 5681774 5681425 5682337 + gene protein_coding_gene FALSE TRUE AT3G16670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16660.1); similar to Phylloplanin precursor (T-phylloplanin) (GB:Q56S59) -4.1510214466759 -47.5672544157574 1.63736670702828e-11 1.2042832130193e-07 13.5799158660339 12.4273617609641 -4.1510214466759 0.079858871763409
AT4G22950_at 2.45920345738567 2.61900394535838 7.84228524614925 7.94269054760933 8.44520064570552 7.74275804769473 3.52918958090934 3.56295998852205 1.59731747973650 2.61447172935355 4.78593139797608 4.35321549433539 5.3769578295364 7.2244111007292 6.15171783294883 7.02302837633594 7.00092200999315 5.71960503795541 1.43200939477461 0.234229844030811 0.234229844030811 0.234229844030811 0.242109019949675 0.23482734054935 0.242390676166898 0.235670205464483 0.234229844030811 0.256014806361513 0.238900640089532 0.235028439667012 0.235044232277770 0.235210561042042 0.247710555247711 0.244721049069291 0.237670115443658 0.244779367261904 0.239921798443515 0.254129910436157 4 4|0 -|/ 12023979 12027317 12025341.222 12023926 12027432 - gene protein_coding_gene FALSE TRUE AT4G22950.1 AGL19 (AGAMOUS-LIKE 19); transcription factor MADS-box protein AGL19 Identical to Agamous-like MADS-box protein AGL19 (AGL19) [Arabidopsis Thaliana] (GB:O82743); similar to AGL14 (AGAMOUS-LIKE 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G11880.1); similar to MADS-box protein AGL14 (GB:AAC49082.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 4.51192590621696 40.9501389966846 5.73339325946281e-11 4.21633740300895e-07 13.4942224084243 9.43578135054904 4.51192590621696 0.126007500615384
AT3G05730_at 10.6756367675512 10.5722561031340 4.45616315723792 4.55960712907676 5.82492340837975 5.97057136186083 9.79758620684767 10.0117945773261 7.21501871446633 8.77886736907171 7.91152549913421 10.6248148678154 7.83964605506799 8.46470762149685 10.4124178563509 4.2642676531655 7.52637277465538 7.01241801103469 9.11876144142028 0.196257732356933 0.19656545468432 0.196870151794635 0.20363090894108 0.198872380414233 0.204995530593925 0.199724851447661 0.196361928331462 0.203011065730499 0.20034692226013 0.194894956336762 0.198132007117549 0.19528938346363 0.199610933596376 0.198406180666602 0.199078928012463 0.208820058606045 0.199509593600014 0.194894956336762 3 3|0 +|/ 1696076 1696467 1696346.7 1695982 1696714 + gene protein_coding_gene FALSE TRUE AT3G05730.1 Encodes a defensin-like (DEFL) family protein. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05727.1) -2.71268168277762 -35.4961902034008 1.89263668207984e-10 1.39165575233331e-06 13.3872214754197 15.9225192392565 -2.71268168277762 0.0514780962811783
AT2G21650_at 8.58394661310563 8.75838336891464 3.74536061060993 4.01880298415324 3.47117696585657 3.24578434519067 6.59790095022831 6.77200136517199 4.49653801548407 4.7984313892319 3.94056289815735 4.03230220619654 3.60060531095117 3.09495486507761 3.32310104789528 4.77680799399844 2.78583532394799 3.20010516482321 6.40920603155337 0.284176813674068 0.283114132632110 0.272152583712740 0.267779679871143 0.268190727638008 0.27651040099656 0.278580182284626 0.276877320392836 0.277905678435261 0.273023945093634 0.272967982788103 0.267655025716005 0.269055229615359 0.285639651446897 0.267655025716005 0.267655025716005 0.289616772685116 0.272518060312659 0.272638869253992 2 2 + 9266736 9266987 9266845.182 9266663 9267736 + gene protein_coding_gene FALSE TRUE AT2G21650.1 MEE3 (maternal effect embryo arrest 3); DNA binding / transcription factor similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G39250.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -2.84910882097235 -33.4946348157637 3.0721309760074e-10 2.25863069356064e-06 13.3352658993563 10.0636743988059 -2.84910882097235 0.074697036797757
AT3G46370_at 5.8521054481967 5.42107038547599 1.91726629404478 1.41589241214715 1.42044510283032 1.71940334740554 7.84168937340301 7.23653719677045 7.38025023598448 7.50696807664637 3.74293682073483 3.24601906867432 3.59844913175312 4.14221421283802 3.92943163204712 3.08725687954673 3.85794705030851 3.86003812293951 7.04532723772229 0.226325189084703 0.214414666711775 0.216764945365237 0.219024959883329 0.224227463586694 0.214097193799513 0.227063364120092 0.224542717742454 0.231831902784713 0.217025910540892 0.208570287788836 0.209141378114025 0.220748234554625 0.213921812792618 0.208570287788836 0.210196582873392 0.213115061870667 0.215605296006499 0.218197684308768 3 3 + 17065857 17066462 17066232.091 17062940 17066499 + gene protein_coding_gene FALSE TRUE AT3G46370.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46340.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G46420.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46400.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -4.29870535689185 -32.6721922750348 3.78008674545817e-10 2.7787417665863e-06 13.3113215819073 9.59999376085407 -4.29870535689185 0.163511675421749
AT1G52890_at 8.53188540137141 8.90103059778221 10.2325528146647 10.3922451297885 10.2459269154277 9.69333875453285 4.68786479699512 4.56728858899541 3.93383516363563 3.70796169572664 6.39360731846366 5.91462949893881 7.02280051455934 6.0622142384622 5.826486715235 7.65384431677273 8.37714758077001 7.19140965376104 2.80146563475750 0.281880395728497 0.279228866231669 0.278463658430478 0.283622372857203 0.283535042279071 0.28328367448374 0.277522955404944 0.276346989412189 0.282972389495321 0.279101157966281 0.276346989412189 0.280368697801529 0.281601687310387 0.284413485383986 0.276346989412189 0.279939370029737 0.276346989412189 0.276593999030841 0.284576728154718 1 1 - 19700989 19701580 19701195.727 19700672 19702150 - gene protein_coding_gene FALSE TRUE AT1G52890.1 ANAC019 (Arabidopsis NAC domain containing protein 19); transcription factor encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. Identical to NAC domain-containing protein 19 (ANAC019) (ANAC) (Abscicic-acid- responsive NAC) (ANAC) [Arabidopsis Thaliana] (GB:Q9C932); similar to ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15500.1); similar to NAC-domain protein 485 [Brassica napus] (GB:AAP35056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 3.39658926944891 31.7454539059001 4.80510312042258e-10 3.53175079351059e-06 13.2822685322182 13.5496941137749 3.39658926944891 0.120103191893493
AT3G23880_at 6.134290892215 6.35439358294645 1.89019843891709 1.80184300500628 2.95015195700558 2.51606549981527 6.64341157503858 7.20805882327944 5.84857077666394 6.02495474186639 3.08613073779153 4.187995415406 4.13318701569483 4.303115636994 3.44094828183205 5.32306709417577 3.06744862258321 2.97532815876326 7.09325091620445 0.236253354575289 0.235085348514399 0.232399710966792 0.244565594990984 0.236040230111197 0.246287314653639 0.238927255133778 0.230912443718473 0.247184300368015 0.234538412373321 0.238039642433765 0.230912443718473 0.230912443718473 0.230912443718473 0.233651054791604 0.236463631024959 0.242248112688815 0.237356162387284 0.232689636015568 3 3 - 8622096 8622549 8622306.091 8621995 8623169 - gene protein_coding_gene FALSE TRUE AT3G23880.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G06240.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE90596.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE77917.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -3.4015400921785 -30.2851300311783 7.11442324877022e-10 5.22838964552123e-06 13.2314600961502 9.50575743776963 -3.4015400921785 0.129907405034099
AT1G56300_at 10.8470758732758 11.0869973973496 10.9697011062395 10.9902399994775 11.6387166944813 11.4309484529756 9.27115149674222 9.22201553033437 7.12155035358173 7.24146155610164 10.2540646805430 10.1137014113155 10.4112549443490 10.4545039565026 9.90558822193879 9.39745078155508 9.76038554818002 9.95265248384898 5.66040860011844 0.148712546983598 0.146787583644921 0.145864574908791 0.147573486247358 0.150440242781457 0.156269683003575 0.143681015779636 0.151403983132381 0.212178874454848 0.212000196316355 0.144994667680393 0.147429512538998 0.143681015779636 0.150574542459927 0.153335785736726 0.143681015779636 0.159652666809887 0.149004931836959 0.252188086620119 1 1|0 -|/ 21082687 21083788 21083307.5 21082485 21084088 - gene protein_coding_gene FALSE TRUE AT1G56300.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G14200.1); similar to DnaJ-like protein [Glycine max] (GB:AAM23263.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 2.25365911956494 28.9613316859086 1.0322347190372e-09 7.58486071548534e-06 13.1792674872406 19.0349426972577 2.25365911956494 0.0556919294455077
AT4G16146_at 9.83165914138968 10.0930207269445 10.1646635065586 10.2022718946112 10.8974168643468 10.4420259137412 8.12741871293888 7.91485438797016 5.43974256318317 6.78531952688068 9.8739138448494 10.1745291618158 10.1992453770048 10.0857359218817 10.0468436432097 9.48359566594595 10.0459275860392 9.88895414959138 5.84449787154115 0.155394203765553 0.155591171483819 0.154645957772833 0.155324315966211 0.158269942298631 0.158725509277402 0.167300806268138 0.167622762621167 0.182073847085472 0.176846819453096 0.155102317570507 0.152429587181978 0.149924811704046 0.159795992266773 0.149924811704046 0.155851319027595 0.157455057744651 0.154347309388229 0.183926420142655 4 4|0 -|/ 9142852 9144325 9143224.857 9142418 9144592 - gene protein_coding_gene FALSE TRUE AT4G16146.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69510.2); similar to negatively light-regulated protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97694.2); contains InterPro domain Lg106-like; (InterPro:IPR012482) 2.69325640871378 28.11765353754 1.32015483182482e-09 9.69917754941696e-06 13.1424936972224 17.7081813048929 2.69325640871378 0.0982439693214116
AT1G11210_at 8.72462994874146 8.93424365536814 9.73669510659433 9.66118977884786 10.4558892793904 10.0097215717738 6.48881003879863 6.18595784311498 3.41552123295832 3.06398943541259 5.89468020734034 5.29158657219979 7.3407926529961 6.43121520704152 5.54496317129237 6.19050217678969 8.01289484747023 5.98454707854192 3.34202955153765 0.330336864818349 0.331915799132013 0.338939981265657 0.331299708142841 0.340698809291498 0.336349891779220 0.319201322439159 0.32030519324135 0.342421362428377 0.340670130599120 0.319201322439159 0.328325443238674 0.319995934904121 0.321915939392618 0.322342205434972 0.319201322439159 0.319704105823825 0.333960035229001 0.342532783410660 1 1 - 3755883 3756559 3756193.182 3755677 3756998 - gene protein_coding_gene FALSE TRUE AT1G11210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11220.1); similar to fiber expressed protein [Gossypium hirsutum] (GB:AAY85179.1); similar to cotton fiber expressed protein 1 [Gossypium hirsutum] (GB:AAC33276.1); contains InterPro domain Protein of unknown function DUF761, plant; (InterPro:IPR008480) 2.72250728094263 28.0306712284009 1.35462468852803e-09 9.95107296192693e-06 13.1385322717718 13.5797643924179 2.72250728094263 0.100970246457405
AT3G55450_at 9.38731559436298 9.35031819823745 8.84823725492147 8.73669437932525 9.22445022926406 9.10372146559085 4.01975913461625 4.00089099191837 3.92319139812911 3.61199976771956 5.3893158530606 6.13109142129424 4.23767500940198 5.4787288770883 5.94504345092272 4.26493244689355 5.49740135410399 5.4047500559147 3.50487142734982 0.197247933176986 0.194669811402604 0.192366053117816 0.193053043094392 0.194049479576590 0.200811935115476 0.200742735626089 0.197687752688263 0.213570936302334 0.195657318803519 0.199382110438244 0.197840008564944 0.192029547935285 0.195389066072080 0.198959404853042 0.193172088802816 0.206881204129697 0.200672092809844 0.199766856763 3 0|3 /|+ 20570544 20570831 20570708.111 20568876 20571189 + gene protein_coding_gene FALSE TRUE AT3G55450.1 protein kinase, putative similar to BIK1 (BOTRYTIS-INDUCED KINASE1), kinase [Arabidopsis thaliana] (TAIR:AT2G39660.1); similar to Os01g0973500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045548.1); similar to protein kinase (GB:AAA18853.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.95115064833858 27.6260632681264 1.52876791048664e-09 1.12288003025244e-05 13.1196637876297 12.3207424925218 1.95115064833858 0.0293387945512947
AT2G38530_at 5.26484880596722 4.90345513385774 3.34063067083659 3.31774950452547 10.0316873893068 10.1489293108423 3.55637937257909 3.74258851094774 3.81785269605498 8.71035029894654 8.38701678573212 8.73716346766713 8.13439297771669 8.12544315455156 8.76429331048919 5.26900045019872 4.95712688616463 9.65164003194612 3.95875293374602 0.341350668931756 0.341350668931756 0.344429620808470 0.349536137415103 0.364454683036161 0.369197081741226 0.363182048267178 0.36282266757671 0.363106036321160 0.353857852107229 0.341350668931756 0.343757114512290 0.341762866517848 0.341350668931756 0.346375081879594 0.342541768426488 0.344433646274435 0.362909652460213 0.348218736344351 2 2 + 16135576 16135840 16135686.455 16135456 16136236 + gene protein_coding_gene FALSE TRUE AT2G38530.1 LTP2 (LIPID TRANSFER PROTEIN 2); lipid binding Involved in lipid transfer between membranes. Belongs to a family of Lipid transfer proteins. Sequence similarity to other plant/Arabidopsis LPT genes but highest similarity to LPT1. Stress and pathogen-inducible motifs found in the upstream region.Expressed in flower, leaves and siliques but absent in roots. Identical to Nonspecific lipid-transfer protein 2 precursor (LTP 2) (LTP2) [Arabidopsis Thaliana] (GB:Q9S7I3); similar to LP1 (nonspecific lipid transfer protein 1) [Arabidopsis thaliana] (TAIR:AT2G38540.1); similar to lipid transfer protein [Brassica rapa subsp. pekinensis] (GB:AAT40130.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 2.30026945992447 27.2244590537881 1.72673348058726e-09 1.26811306814328e-05 13.1001893595003 12.1627393920116 2.30026945992447 0.0733287247957095
AT2G14610_at 13.2017457055188 13.4669125952117 13.5605801872181 13.5858117177314 11.6680669854711 11.4518758100631 2.77610752599057 2.61339932748172 3.10683873970318 3.15575902838899 2.31436240343767 2.5799308296297 2.35180622067649 2.10752883528651 2.3973182890694 2.22001741342490 3.81435976125653 2.46198672837686 2.19526944091838 0.336616551040939 0.336565257324506 0.335127421285115 0.336712428596635 0.340853911425000 0.342212180360591 0.329617578522766 0.332701193048319 0.325650590936433 0.327285488632780 0.326819038990868 0.325650590936433 0.326022932564223 0.325650590936433 0.335785084460798 0.330969813683123 0.329715049951949 0.329768687148108 0.325650590936433 2 2 - 6249169 6249483 6249335.909 6248786 6249545 - gene protein_coding_gene FALSE TRUE AT2G14610.1 PR1 (PATHOGENESIS-RELATED GENE 1) PR1 gene expression is induced in response to a variety of pathogens. It is a useful molecular marker for the SAR response. Though the Genbank record for the cDNA associated to this gene is called 'PR-1-like', the sequence actually corresponds to PR1. Expression of this gene is salicylic-acid responsive. Identical to Pathogenesis-related protein 1 precursor (PR-1) [Arabidopsis Thaliana] (GB:P33154); similar to ATPRB1 (Arabidopsis thaliana basic pathogenesis-related protein 1) [Arabidopsis thaliana] (TAIR:AT2G14580.1); similar to pathogenesis related protein 1 [Eutrema wasabi] (GB:BAF03626.1); contains InterPro domain Allergen V5/Tpx-1 related; (InterPro:IPR001283) 2.13183356352239 26.1730420222472 2.39541907804152e-09 1.75895622900589e-05 13.0453946896673 12.9656639217433 2.13183356352239 0.0657067140991357
AT1G49230_at 8.4228341269705 8.62008575428989 8.29020445903013 8.65550218715003 9.45390088610963 9.31022154171384 5.44177532565055 5.28717430199366 2.93998403183991 2.80318583587553 5.01551171906074 5.45341735361682 5.03229896811766 4.94650183976921 6.05169368278154 5.04629302439744 5.68970873461543 5.48816028961459 2.579193144193 0.227898423708005 0.229578270763767 0.227898423708005 0.228747632387927 0.229059494617182 0.228550019981640 0.231264234599180 0.229882119850689 0.239440972639499 0.23174289864317 0.230881042115283 0.227898423708005 0.235679599497077 0.234570552731783 0.233969588038280 0.227898423708005 0.237168152056932 0.230678985860854 0.227898423708005 1 1 + 18213219 18213588 18213418 18212929 18213796 + gene protein_coding_gene FALSE TRUE AT1G49230.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1L (ATL1L) [Arabidopsis Thaliana] (GB:Q6NQG7;GB:Q9M9C1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49200.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE81190.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 2.27540854440098 25.9785030799111 2.54856402926817e-09 1.87115571028869e-05 13.034607686795 11.9924969255966 2.27540854440098 0.0805951567744595
AT2G40750_at 10.265772142298 10.3263359796739 10.5177237006226 10.5643351434801 8.33517289023288 8.40605509399722 3.46797762138123 3.34645553864742 8.07916722100214 3.35922914231621 6.73321889526472 7.27321079261113 5.0735112148127 7.80024765014484 4.39428579063339 5.29599402889085 5.18204977331085 7.93128154553724 4.1203726802126 0.234310719565489 0.234047189608346 0.236134377497259 0.234682101172942 0.23100017753884 0.23784271987338 0.233091943659463 0.241813162830519 0.239947541050253 0.236428512752881 0.232115770971613 0.232573771135182 0.240097554878581 0.23100017753884 0.237447839285169 0.231229797147676 0.235544609395563 0.232474315610654 0.233441932986226 2 2 - 17007759 17008201 17007981.909 17007532 17009546 - gene protein_coding_gene FALSE TRUE AT2G40750.1 WRKY54 (WRKY DNA-binding protein 54); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 54 (WRKY DNA-binding protein 54) (WRKY54) [Arabidopsis Thaliana] (GB:Q93WU8); similar to WRKY70 (WRKY DNA-binding protein 70), transcription factor [Arabidopsis thaliana] (TAIR:AT3G56400.1); similar to elicitor-induced DNA-binding protein homolog [Matricaria chamomilla] (GB:BAA87069.2); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.81420250007006 25.8019901244688 2.69703643659381e-09 1.97989444810351e-05 13.0246338966528 13.8520941684138 1.81420250007006 0.0277063210420030
AT1G62480_at 8.9150839368791 8.85824246473729 9.99535159322872 9.91437947895866 10.8816631280786 10.8984014767105 9.4337941379844 9.51911973642855 8.61899698834293 7.5685719542062 10.9900311091572 10.5917962411386 10.2637107387146 10.4662986615229 10.7441980414189 10.3373847078316 9.96963734408112 10.7602742716115 8.95103711586676 0.115887870624779 0.111970859006987 0.112049796797491 0.108187133370995 0.113703180777297 0.113475843867527 0.109863512280743 0.107014542352385 0.118534944800504 0.143119082244671 0.107461886486587 0.108888961076025 0.107014542352385 0.108731506284924 0.107714796205071 0.107014542352385 0.11374332617111 0.107598441640681 0.117889859900081 1 0|1 /|+ 23132775 23133176 23132938.2 23132370 23133424 + gene protein_coding_gene FALSE TRUE AT1G62480.1 vacuolar calcium-binding protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12080.2); similar to vacuolar calcium binding protein [Raphanus sativus] (GB:BAA99394.1); contains domain UNCHARACTERIZED (PTHR22683:SF22); contains domain SPORULATION PROTEIN RELATED (PTHR22683) 1.68838494343302 24.3047741090725 4.42933072556652e-09 3.25112875256582e-05 12.9322814281239 19.2494803652456 1.68838494343302 0.0227933859740342
AT2G21660_at 12.2861779394476 11.9127547931824 11.7855136983266 11.4908611696362 12.4872636003106 12.1831756052807 8.05906003678604 7.64655199470076 7.46480047006452 7.30981731316214 10.5775493560734 10.9416530171660 10.4020177681803 10.769884338854 10.9568375668019 9.87876743658987 10.1499907167450 10.5433249384657 7.77857692767405 0.129663288416150 0.125964753520594 0.125779137486651 0.128939873528976 0.137936597053888 0.130455904488942 0.140113518957085 0.149444593564163 0.149141969251070 0.148665564874642 0.129127044590310 0.128242211479309 0.129250091395346 0.126186452576844 0.128640708726457 0.131569981405891 0.135420685098981 0.129241788350148 0.142918282098697 2 2 - 9272634 9273372 9273027.273 9272329 9273469 - gene protein_coding_gene FALSE TRUE AT2G21660.1|AT2G21660.2 ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding|ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2); RNA binding Encodes a small glycine-rich RNA binding protein that is part of a negative-feedback loop through which AtGRP7 regulates the circadian oscillations of its own transcript. Gene expression is induced by cold. Identical to Glycine-rich RNA-binding protein 7 (GRP7) [Arabidopsis Thaliana] (GB:Q03250;GB:Q8LEV4;GB:Q94B62); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to Glycine-rich RNA-binding protein GRP1A (GB:P49310); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 7 (GRP7) [Arabidopsis Thaliana] (GB:Q03250;GB:Q8LEV4;GB:Q94B62); similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 2.51016944970929 23.355703748982 6.16194717950559e-09 4.52225303503915e-05 12.8656451081687 20.0040372110387 2.51016944970929 0.121001889102320
AT4G10500_at 9.54062220946008 9.9603593766677 11.3475186134501 11.4744306036838 9.58310173086407 9.2736732753751 0.822273066126265 0.866554331827794 3.50353694217896 1.25472921808242 1.11833630929077 1.05698609163389 1.71925723076223 1.26860575347084 0.602400318156993 1.73321871381123 1.56312385776158 1.50068777581324 1.48837272509674 0.279141587199640 0.277205485191688 0.272670565457180 0.274606923549818 0.280482463348471 0.279567875144349 0.258425773637652 0.258425773637652 0.270128870183495 0.258595331861026 0.269183007679256 0.259508877513667 0.267336583452226 0.259185821680862 0.261972869601721 0.258425773637652 0.263450223672657 0.271117106689941 0.260260586046855 4 4 + 6491663 6492299 6492040.909 6491013 6492472 + gene protein_coding_gene FALSE TRUE AT4G10500.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G10490.1); similar to Os04g0581100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053652.1); similar to H0303A11-B0406H05.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67943.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 2.18017142718718 23.3548369114806 6.16384206479101e-09 4.52302730714364e-05 12.8655810384300 9.55983663499368 2.18017142718718 0.0931916223815415
AT3G56710_at 9.65214276254548 9.99103360907238 10.1523287370652 10.3495483676779 9.77427530294402 9.5254787292510 3.72856021270253 4.02297765994855 7.45010373716645 3.83336813327697 6.79090501046103 7.06243119248259 5.66039039820979 7.46499282574812 5.71019073036298 6.32952180815167 6.99903039784623 7.42998596336268 4.90223331951991 0.259951791841775 0.259951791841775 0.259951791841775 0.259951791841775 0.261595600779352 0.261092378950345 0.266557681064483 0.276999989624917 0.261558199430062 0.266762387543444 0.259951791841775 0.262904828800563 0.263480190630419 0.260897863600161 0.259951791841775 0.267850650664935 0.266888680034625 0.259951791841775 0.271830246260371 3 3 - 21018086 21018460 21018249.727 21017729 21018544 - gene protein_coding_gene FALSE TRUE AT3G56710.1 SIB1 (SIGMA FACTOR BINDING PROTEIN 1); binding Sig1 binding protein; interacts with Sig1R4. As well as Sig1, SibI is imported into chloroplasts and its expression is light-dependent in mature chloroplasts. similar to sigA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G41180.1); similar to VQ [Medicago truncatula] (GB:ABE93011.1); contains InterPro domain VQ; (InterPro:IPR008889) 2.19371260033715 23.2662878427648 6.36088309476381e-09 4.66697992662821e-05 12.8590038357775 14.4376262247255 2.19371260033715 0.0951523655358528
AT1G66100_at 11.9322649545901 12.1891864579261 8.51425836848633 8.81022244730822 9.10022099036216 8.76317795825268 12.8544687214657 12.9937426316114 13.1418941758578 13.2472172957759 12.6694461712648 13.0707957920504 13.2268889644827 12.8639898001231 12.0258875559937 12.7035204073486 11.6821192901113 12.7464280967167 13.3870310037106 0.0885333221497122 0.0856519230472216 0.106109580453512 0.102718241004893 0.093864031162581 0.104202951655540 0.0883761838239716 0.0862748699228861 0.0932313168276047 0.0873976069949868 0.0873688490499009 0.0856519230472216 0.0864157447019019 0.090899456812524 0.0882960437479943 0.0856519230472216 0.0922677107136773 0.0856519230472216 0.0865344503554723 1 1|0 -|/ 24609552 24610044 24609863.9 24609334 24610200 - gene protein_coding_gene FALSE TRUE AT1G66100.1 thionin, putative Identical to Probable thionin-2.4 precursor [Contains: Probable thionin-2.4; Acidic protein] [Arabidopsis Thaliana] (GB:Q9C8D6); similar to THI2.2 (THIONIN 2.2), toxin receptor binding [Arabidopsis thaliana] (TAIR:AT5G36910.1); similar to thionin (GB:AAC41679.1); contains InterPro domain Thionin; (InterPro:IPR001010) -2.16526269949132 -23.2598232216876 6.37554167207727e-09 4.67709737063589e-05 12.858521138243 23.5858671503551 -2.16526269949132 0.092644652622384
AT3G50970_at 8.33798494537858 8.59679175012395 8.76828844035611 8.90847451952392 9.1007399587905 8.82434875845761 4.62438577931385 5.2344172875163 2.94818190483700 3.13545400312913 5.0495279533193 5.62324468873054 5.81301325999037 6.87618454462176 4.52091786362235 7.09719834403775 7.76642355099469 4.99618878147308 3.55758287441541 0.220778907785521 0.219406714988915 0.227346993509899 0.219406714988915 0.221514985174762 0.224197139751497 0.220596188010483 0.233582633311758 0.234874450332224 0.224708527313503 0.223000543832928 0.222878457447201 0.224471538115580 0.231272199804477 0.228823130989173 0.224502434668883 0.229559222912921 0.225536075012065 0.224027950758661 3 3 + 18951866 18952307 18952066.636 18951758 18952535 + gene protein_coding_gene FALSE TRUE AT3G50970.1 LTI30/XERO2 (LOW TEMPERATURE-INDUCED 30) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer freeze tolerance. Located in membranes. mRNA upregulated by water deprivation and abscisic acid. Identical to Dehydrin Xero 2 (Low-temperature-induced protein LTI30) (XERO2) [Arabidopsis Thaliana] (GB:P42758;GB:Q41966); similar to dehydrin, putative [Arabidopsis thaliana] (TAIR:AT3G50980.1); similar to dehydrin-/LEA group 2-like protein [Lophopyrum elongatum] (GB:AAC05921.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 2.47808287896021 22.4255167937744 8.62686508555423e-09 6.32780554025403e-05 12.7932145374433 12.3902174136706 2.47808287896021 0.126597930322199
AT1G64390_at 7.73253395515183 7.74413262111152 2.99910768474332 2.98010205784856 5.34949880473972 5.21992970222513 9.2126263306071 9.35332474908405 8.09739252529257 8.36482413702439 9.81141090247656 10.7624978988076 9.32144863915278 9.36411337993725 10.5437252265792 9.52180384901676 7.81117688592884 9.79704557685312 8.80235600550824 0.191290955963578 0.179278967075559 0.193460067914654 0.187885916684986 0.190233759601853 0.206351867102025 0.176201494762119 0.180840194031523 0.204218195321123 0.187352597792714 0.177156354278619 0.17879652625776 0.182315485867178 0.184103661745857 0.185194532877228 0.177760204401725 0.193007878197679 0.17962752510693 0.186397288982643 1 1|0 +|/ 23917560 23918281 23917857.111 23914782 23918892 + gene protein_coding_gene FALSE TRUE AT1G64390.1 endo-1,4-beta-glucanase, putative / cellulase, putative Identical to Endoglucanase 6 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 6) [Arabidopsis Thaliana] (GB:Q42059;GB:Q8H160;GB:Q9C7W3); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT4G11050.1); similar to endo-1,4-beta-glucanase, putative / cellulase, putative [Arabidopsis thaliana] (TAIR:AT1G48930.1); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT2G32990.1); similar to cellulase [Fragaria x ananassa] (GB:AAC78298.2); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAB43938.1); similar to endo-beta-1,4-glucanase [Fragaria x ananassa] (GB:CAC94006.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.58918313968191 -22.2375121694032 9.24917482260315e-09 6.78334481489715e-05 12.7776314505022 15.3429954969151 -1.58918313968191 0.0333236696499155
AT2G04160_at 6.50158535152148 6.99108843657158 3.69290154980456 3.45283354886109 3.71846999495844 3.60329219157941 6.51071367777368 6.18297997729206 5.37986261978269 5.03994663489338 3.12234339575787 4.12299681952346 3.05859837365167 3.11697100339992 4.42195656006551 3.89462227963318 3.49075256459017 3.51785363357235 5.19377951272319 0.237559615322723 0.227984674888713 0.229435354828018 0.221238786917346 0.221269907014135 0.227605713255323 0.224825441687276 0.246693670965596 0.231348968609307 0.224128349283224 0.222075942937763 0.221260898913694 0.237319297214667 0.225882727786617 0.221238786917346 0.224182998990751 0.230416890235110 0.235964082969425 0.228060800335269 2 2 - 1401610 1402294 1401935 1401273 1407742 - gene protein_coding_gene FALSE TRUE AT2G04160.1 AIR3 (Auxin-Induced in Root cultures 3); subtilase isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein similar to subtilisin-like serine protease which is believed to be active outside the plant cell. similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59810.1); similar to subtilisin-like protease [Triticum aestivum] (GB:CAJ75644.1); similar to subtilisin-like protease [Glycine max] (GB:AAQ23176.1); similar to putative subtilisin-like proteinase [Oryza sativa (japonica cultivar-group)] (GB:BAD35630.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -2.27049264992382 -22.1169754666453 9.67449137652089e-09 7.09430452640277e-05 12.7674634163521 9.48062879999896 -2.27049264992382 0.111874348601354
AT1G69890_at 7.66821618286848 7.66942830020226 7.63622777946613 7.69895838112063 8.67491687823097 8.75976544375026 5.32986472532583 5.5027983525758 5.2173550268253 4.82656363900922 6.92884793439739 6.88978391608499 6.99952739607214 6.87284829705256 6.49425138841154 6.65032434025673 6.72153756010138 5.8658684390077 5.47024681746329 0.253589668691328 0.253589668691328 0.254173814412298 0.258410411537654 0.265391863734214 0.262383995314597 0.257479604071554 0.275356639197227 0.263894947038239 0.257948208170785 0.26444736960406 0.26138387803507 0.262399924813088 0.253589668691328 0.257720915436626 0.253589668691328 0.254276864098010 0.263186540137979 0.259079667081665 1 1|0 -|/ 26327128 26327906 26327503.3 26326774 26328267 - gene protein_coding_gene FALSE TRUE AT1G69890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27100.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 1.57818769744468 21.9624873590241 1.0251898924633e-08 7.51669229154092e-05 12.7542243770658 13.2921530821204 1.57818769744468 0.0350588060793385
AT2G18050_at 6.52369258952301 6.68595311138523 8.53797837015755 8.10977170331265 10.5108602314286 10.0723740827462 4.42354851721693 3.82113765765007 1.85786723669192 2.60162833851015 3.90111874860277 5.45301513273842 5.70727346265531 3.6679587711738 3.37598425232362 3.96619869835939 5.71266817251546 3.64950058908508 4.43380195135648 0.272634713917919 0.279515930290745 0.276958963088248 0.276647575476284 0.274186479499480 0.27464522032471 0.272336072504579 0.268395842961825 0.281158101209767 0.273358148765349 0.268144505450775 0.273580742325008 0.275837942044556 0.277967368746233 0.274019432676205 0.273851169991051 0.268144505450775 0.273119800926230 0.276492062908654 2 0|2 /|+ 7853193 7853724 7853480.6 7853005 7853966 + gene protein_coding_gene FALSE TRUE AT2G18050.1|AT2G18050.2 HIS1-3 (HISTONE H1-3); DNA binding encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 variant [Lycopersicon chilense] (GB:AAF64525.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Histone H5; (InterPro:IPR005819); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 variant [Lycopersicon chilense] (GB:AAF64525.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818) 2.70447267377317 21.7320877213488 1.11859289697930e-08 8.20040452775528e-05 12.7340371601589 11.0324881515698 2.70447267377317 0.151347001325734
AT1G21520_at 7.81742823179312 8.32619102090833 9.38857268772455 9.31803011918885 9.04920249486727 8.50933481372324 2.76058510226268 3.30890385381184 6.25503278846668 3.78025425050136 7.04365906692799 8.19276761256147 6.43587861237318 6.25135565678089 7.26063077835756 6.43126731033698 5.73393058863901 7.77910791017224 4.50032642841578 0.388791882222519 0.388791882222519 0.388791882222519 0.388791882222519 0.388791882222519 0.388791882222519 0.396157822890775 0.406144149680685 0.388791882222519 0.402297825371389 0.388791882222519 0.388791882222519 0.388791882222519 0.390284750648164 0.397778262727824 0.388791882222519 0.391326583297463 0.388791882222519 0.394030991486826 1 1 - 7534535 7534635 7534582.5 7534522 7534722 - gene protein_coding_gene FALSE TRUE AT1G21520.1 unknown protein 2.77943908978636 21.4530020947941 1.24470328269617e-08 9.1236750621629e-05 12.7088504445622 13.1779206311083 2.77943908978636 0.160103755047947
AT1G19180_at 9.79771396725 9.99621707052528 9.1557633430242 9.12699711518403 8.79686391925367 8.78060514039655 6.76220179480954 7.03751471696376 5.13494154760211 4.57013143421408 7.55062353123585 7.12691523206326 7.24183232808402 7.23576396656338 7.31853280735823 6.94957605338884 6.47725778798801 6.91211764844833 3.14871103883388 0.215118400927576 0.214597180812152 0.21127172023995 0.209507805814903 0.208246331587223 0.213059291362592 0.215083543365105 0.212998424346294 0.223639908509167 0.22461508618457 0.209524210817559 0.208246331587223 0.221770887876366 0.208246331587223 0.210371910860648 0.212114543785112 0.219047624118142 0.219394283954333 0.224235216993898 1 1 + 6622663 6623232 6622885.818 6622085 6623611 + gene protein_coding_gene FALSE TRUE AT1G19180.1|AT1G19180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74950.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); contains InterPro domain ZIM; (InterPro:IPR010399) 1.69181411895934 21.4224789951119 1.2594334743093e-08 9.23038793321286e-05 12.7060457368212 14.3748206798965 1.69181411895934 0.0590145661970273
AT4G02380_at 11.1568716275963 11.1100394802243 11.9170154186863 11.8886846949143 10.6931140026027 10.2043071040591 3.98438014340497 3.49445955156458 7.94672962244543 5.2420155584746 6.7932572348822 7.86193446743797 5.21255812705832 6.94023979757048 6.34517762541118 7.17845812323658 6.7521897720289 7.07102021082448 4.78494700998709 0.282929296047522 0.282388364527811 0.290645656503882 0.285090753912875 0.281146866687272 0.286285138226696 0.280388679784883 0.276038287954398 0.291880285232875 0.282876786228551 0.276038287954398 0.277202579995273 0.281028920986396 0.276038287954398 0.286074551835337 0.276038287954398 0.287377735989300 0.276038287954398 0.276038287954398 4 4|0 -|/ 1046445 1046783 1046600.889 1046204 1046997 - gene protein_coding_gene FALSE TRUE AT4G02380.1|AT4G02380.2 SAG21 (SENESCENCE-ASSOCIATED GENE 21) Encodes AtLEA5 (late embryogenesis abundant like protein). Also known as SENESCENCE-ASSOCIATED GENE 21 (SAG21). Has a role on oxidative stress tolerance. mRNA levels are elevated in response to various stresses. similar to late embryogenesis abundant 3 family protein / LEA3 family protein [Arabidopsis thaliana] (TAIR:AT1G02820.1); similar to protein induced upon tuberization [Solanum demissum] (GB:CAA66948.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926)|similar to late embryogenesis abundant 3 family protein / LEA3 family protein [Arabidopsis thaliana] (TAIR:AT1G02820.1); similar to late embryogenesis abundant protein 5 [Populus suaveolens] (GB:ABF29697.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) 2.25873314693599 21.1069507054807 1.42367046196316e-08 0.000104326571452660 12.6764555152766 15.6864015779359 2.25873314693599 0.120139110758162
AT4G37370_at 5.74602728088851 6.340118711927 9.34842507729551 9.56940544645534 6.51259401721098 6.4950309226723 2.51260229766523 2.55487237343412 3.70511501157433 3.08943772178817 4.14767296323751 4.13249367329963 3.50295755977454 4.41134307410011 3.18305651654342 3.95524645467861 4.09733253135871 4.28003002416599 3.52363217360994 0.266202226984731 0.263106400270053 0.265368333270025 0.271486610731387 0.275507894804465 0.264630846471621 0.265180107906097 0.274723756561149 0.264691828416479 0.268022746050907 0.264511547579072 0.261703846121357 0.261703846121357 0.263587196796757 0.268777423180261 0.263696552533207 0.267657625081071 0.266916796689637 0.261703846121357 4 4 - 17569982 17570537 17570243.727 17569822 17571698 - gene protein_coding_gene FALSE TRUE AT4G37370.1 CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to Cytochrome P450 81E1 (Isoflavone 2'-hydroxylase) (P450 91A4) (CYP GE-3) (GB:P93147); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 2.10866516529191 20.7387019385620 1.64634120507986e-08 0.000120627420096201 12.6404941431652 9.83646530026144 2.10866516529191 0.109977862310734
AT2G43570_at 10.0667303396190 9.96312622796976 11.8710298505280 11.9395099836658 10.7309850393324 10.3382324013219 3.26959269658171 3.17363933346471 4.21649536083571 2.87531419624591 1.97037728976031 1.52298902877285 2.15428085207057 2.08383976504363 2.31444610396910 2.12340550510056 3.01195147205136 2.12539641687826 2.78025526883132 0.28147082152065 0.289554955821356 0.285916027836628 0.285098072321969 0.286356354855579 0.281242453423278 0.279943712981766 0.283529975691608 0.286507529556287 0.28633897255253 0.281319436947245 0.28285846193837 0.280535170358147 0.278347756782528 0.280650750404353 0.281248237168857 0.284125440568419 0.289618700872436 0.280283724426453 2 2 - 18083538 18084253 18083811.636 18083301 18084540 - gene protein_coding_gene FALSE TRUE AT2G43570.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43590.1); similar to chitinase class 4-like protein [Brassica napus] (GB:AAK62047.1); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 1.73715734910237 20.5734769787333 1.75868681810777e-08 0.000128841396294575 12.6238377251449 11.6461177738155 1.73715734910237 0.0731931264942093
AT1G55260_at 8.14785788378196 8.43906350882582 3.70564628932188 3.75302808036622 5.37196473414414 4.79146378943074 10.0373477669444 9.94288384112963 8.4823354190885 9.42324143620114 10.0015654424387 10.2269718008407 9.8257837676275 9.48877468294975 9.98824393694043 8.55830289581432 8.22853529525262 9.39879422497156 8.95659764405978 0.206160465555143 0.201478710504177 0.226334125260131 0.229208816241255 0.232659311049981 0.223859554462799 0.202753723314616 0.199273075402836 0.215933230687403 0.203058645379978 0.199273075402836 0.199273075402836 0.199273075402836 0.199273075402836 0.200914738363132 0.199978736756109 0.217986445154871 0.206603092621216 0.204799725087797 1 1|0 +|/ 20618474 20619795 20618897.8 20618416 20620102 + gene protein_coding_gene FALSE TRUE AT1G55260.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to lipid transfer protein-related [Arabidopsis thaliana] (TAIR:AT2G44300.1); similar to Protease inhibitor/seed storage/LTP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94168.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -2.11284959372504 -20.3752012982760 1.90496319335075e-08 0.000139538553912943 12.6034070171484 15.9829968228952 -2.11284959372504 0.113868197497863
AT1G07430_at 5.57704110767083 5.22346222958084 7.78740889858507 7.5709927675211 7.84241464221159 7.77520146066738 5.88262359747701 6.28420652558516 3.0924763203916 4.01385457219969 4.75727547785336 3.78623733050997 6.45179716225905 5.12512187297151 4.16318976383394 4.79139937991928 7.47199656036654 5.34861243309404 2.82678070012387 0.239021282782885 0.23998517443993 0.246457848128371 0.24373375084065 0.25088145559713 0.24057140338887 0.238593058781011 0.243723436383608 0.252743166533139 0.243090643969213 0.237958743925208 0.244603859136588 0.237958743925208 0.240195522772758 0.238846307713815 0.23973892362465 0.248087896074469 0.249799325343936 0.255073242225297 1 1|0 -|/ 2281175 2281802 2281481.5 2280832 2282825 - gene protein_coding_gene FALSE TRUE AT1G07430.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G29380.1); similar to protein phosphatase 2C [Nicotiana tabacum] (GB:CAC10358.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 1.96404381359854 20.2642905566422 1.99268271419423e-08 0.000145944081987586 12.5917628886342 11.0169143762487 1.96404381359854 0.100556587568047
AT2G16720_at 5.67779642027958 5.75532808971883 7.08696990749664 6.60450975451895 7.70396092058999 7.20532199874008 3.55720032365175 3.73803058402507 2.63119240645414 2.80350403501049 4.74308787732761 4.32325793851357 5.12824702358583 4.30430847625996 4.19897518593538 5.6679055798875 5.25318230780792 4.51426476449943 3.05542893342427 0.271830270768528 0.270719244534506 0.28108201270722 0.278728763947494 0.27930161389446 0.278874359194437 0.267526588333415 0.278821373705337 0.270994180345189 0.277575794888621 0.270902973100944 0.271555670102148 0.272932914518784 0.277060908753332 0.272393382165459 0.267526588333415 0.267526588333415 0.271812149146116 0.273172336422189 2 2|0 -|/ 7262761 7263377 7263063.3 7262616 7263662 - gene protein_coding_gene FALSE TRUE AT2G16720.1 MYB7 (myb domain protein 7); DNA binding / transcription factor Encodes a member of MYB3R- and R2R3- type MYB- encoding genes similar to AtMYB32 (myb domain protein 32), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34990.1); similar to GHMYB9 [Gossypium hirsutum] (GB:AAK19619.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 2.20235682175756 20.1077680433818 2.12425402001425e-08 0.000155559121885643 12.5750605041461 9.714487467806 2.20235682175756 0.124805808939719
AT1G55210_at 8.88110641646224 9.03189881593698 10.0614708081645 10.2429510581041 8.77131618375419 8.5733161836302 7.76056534877899 7.91516195729357 5.51363129647231 5.45554556688634 7.08625447562584 8.30062919072312 7.02570682598996 7.63232370735927 8.6132053199114 7.4243867469508 7.42881129577758 7.35852811855193 5.48603285644798 0.179433215223393 0.178404845678055 0.174700858453993 0.17630957763928 0.174700858453993 0.178056224941690 0.174700858453993 0.185659165050306 0.183014341491502 0.188084298942033 0.175065945948745 0.174700858453993 0.180757088460455 0.179553226452844 0.175210417460035 0.174700858453993 0.182446848171352 0.179221707775672 0.183257311901684 1 1 - 20601856 20602190 20602025.455 20601536 20602375 - gene protein_coding_gene FALSE TRUE AT1G55210.1 disease resistance response similar to disease resistance-responsive protein-related / dirigent protein-related [Arabidopsis thaliana] (TAIR:AT5G49040.1); similar to disease resistance-responsive family protein [Arachis hypogaea] (GB:AAZ20288.1); similar to Os12g0174700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066288.1); contains InterPro domain Plant disease resistance response protein; (InterPro:IPR004265) 1.56937061365217 19.8158235191798 2.39640653679834e-08 0.000175464886624374 12.5430391961226 15.4516236548723 1.56937061365217 0.0596417628671519
AT1G52400_at 11.3428393503437 11.5038784987751 10.0121075814988 9.88336176720376 10.3473785711919 10.3389473337698 9.4243732163854 9.72453233223452 4.90245919616814 8.18299761386261 9.80991967486429 10.7864167515326 10.8267349033691 10.5153871665348 10.5283439657316 11.2954337261599 9.91180283956663 10.3195682906464 7.83431808716856 0.0960226535935102 0.0963020257239852 0.0950143046280818 0.0966019485804862 0.0945005734866114 0.101635518979663 0.0942623005942841 0.0943447766798944 0.144349043500642 0.112581981777922 0.0987255697875473 0.0958958369052049 0.0970013256222562 0.0970858794518212 0.097508137338719 0.0944286136004376 0.0961283153233261 0.0949763438981461 0.119972202530082 1 1|0 +|/ 19520684 19521563 19521270.3 19518820 19521880 + gene protein_coding_gene FALSE TRUE AT1G52400.1|AT1G52400.2 BGL1 (BETA-GLUCOSIDASE HOMOLOG 1); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 1 Identical to Beta-glucosidase homolog precursor (EC 3.2.1.-) (BG1) [Arabidopsis Thaliana] (GB:Q9SE50); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to ATA27 (Arabidopsis thaliana anther 27), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G75940.1); similar to PYK10 (phosphate starvation-response 3.1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G09260.1); similar to beta-glucosidase [Brassica nigra] (GB:AAB38784.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|Identical to Beta-glucosidase homolog precursor (EC 3.2.1.-) (BG1) [Arabidopsis Thaliana] (GB:Q9SE50); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to ATA27 (Arabidopsis thaliana anther 27), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G75940.1); similar to PYK10 (phosphate starvation-response 3.1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G09260.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 1.58624278985779 19.7196937795135 2.49437582106189e-08 0.000182613253859941 12.5322409596628 19.0584069383589 1.58624278985779 0.063034593575683
AT1G01060_at 8.4178727449154 8.92046092042225 6.08124149006185 6.52050513152252 4.95395964268952 6.06655698903061 10.2443091039108 10.5178596505997 9.84596700501523 10.0367421409878 6.91338681609888 7.47018407755012 7.07797716856698 7.49164993908654 5.48100632388683 8.30991487761654 6.05815741041896 6.3104467916084 10.0789875176801 0.228197838830086 0.228197838830086 0.232465031412987 0.236592351789317 0.228354423051079 0.237798923066655 0.233815938140536 0.238444524910888 0.233271035889296 0.230040135725645 0.230306019139558 0.236615629364676 0.228329989511684 0.233109897165061 0.241176410309473 0.228197838830086 0.245118484162831 0.240982847919909 0.236286408036206 1 1|0 -|/ 34174 34636 34419 33379 37840 - gene protein_coding_gene FALSE TRUE AT1G01060.1|AT1G01060.2|AT1G01060.3|AT1G01060.4 LHY (LATE ELONGATED HYPOCOTYL); DNA binding / transcription factor|LHY (LATE ELONGATED HYPOCOTYL); DNA binding|LHY (LATE ELONGATED HYPOCOTYL) myb-related putative transcription factor involved in circadian rhythm along with another myb transcription factor CCA1 similar to CCA1 (CIRCADIAN CLOCK ASSOCIATED 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46830.1); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -3.35885079362972 -19.5048912916298 2.72987068609554e-08 0.000199826534222193 12.5076421341106 16.15350703256 -3.35885079362972 0.229468799178338
AT4G35060_at 4.80355051602395 5.55317885685263 9.33479294225156 9.30380442813494 9.43449293142483 8.8470410226902 8.50875097672175 7.9981643365683 3.21059850731748 5.32109726082354 8.36392552629638 6.22786130529836 9.21861687612669 8.46920755395312 5.13772126139043 8.39416976024573 9.42227257144294 7.53118226139985 5.60525097485877 0.225134813082691 0.210000692671398 0.203680283334522 0.201046904016077 0.203407817454538 0.20559559842565 0.204907909606307 0.210234924100298 0.223157863455865 0.219058481702837 0.203256550698564 0.209201230812421 0.221725383246170 0.2104896204505 0.210907680851528 0.204290020623247 0.203166884847758 0.207586407573012 0.210942645217862 4 4 - 16685907 16686394 16686061.545 16685725 16686708 - gene protein_coding_gene FALSE TRUE AT4G35060.1 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related similar to ATFP6 (FARNESYLATED PROTEIN 6), metal ion binding [Arabidopsis thaliana] (TAIR:AT4G38580.1); similar to GMFP7 [Glycine max] (GB:AAD09515.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 2.82371285905149 19.3721038787809 2.88782308099156e-08 0.000211359771297772 12.4921030133405 14.2519396115931 2.82371285905149 0.187083329354155
AT3G45970_at 4.0176602747306 4.80112708393559 6.688136988682 6.71486185072151 7.44618110082355 7.77713274301421 4.61211334442986 4.83575895621973 7.27135742617285 5.07285736623582 10.8828616396344 7.71661808583642 9.61674482569916 10.0015988847901 7.52255993867823 6.7863635762101 6.76241512522844 8.47092675164221 6.37295435518087 0.245049674678563 0.248800826357699 0.242756040802151 0.252794038458569 0.24824032991307 0.251704488390976 0.246445294708511 0.247742210270502 0.261551195148771 0.243670801043226 0.253563166816529 0.242756040802151 0.245383362867121 0.248751728935194 0.242756040802151 0.243200153034186 0.255577874047391 0.246517847709203 0.247275337236483 3 3 + 16907540 16908138 16907941.091 16907151 16908293 + gene protein_coding_gene FALSE TRUE AT3G45970.1 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-like A1 precursor (AtEXLA1) (AtEXPL1) (At-EXPL1) (Ath- ExpBeta-2.1) (EXLA1) [Arabidopsis Thaliana] (GB:Q9LZT4); similar to ATEXLA2 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A2) [Arabidopsis thaliana] (TAIR:AT4G38400.1); similar to expansin-like protein [Quercus robur] (GB:CAE12163.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117); contains InterPro domain Major pollen allergen Lol pI; (InterPro:IPR005795) 2.41043398845821 19.2875744628759 2.99367832386045e-08 0.000219077379740108 12.482075781339 13.216155285817 2.41043398845821 0.152256715933243
AT1G59930_at 5.93924971086924 6.0339482242812 3.30105066783612 3.95699471661445 4.40263458706319 3.84261469626542 7.0502940109922 6.34128760967702 5.57420565658844 7.00775428943973 3.24354628561623 2.37453471068504 3.11505291432171 4.29829273975221 2.88166859236379 3.27454466134281 3.61484970102123 2.91490017542489 6.85860214386264 0.582312911610962 0.480452979185415 0.480452979185415 0.480452979185415 0.480452979185415 0.508953429910014 0.480452979185415 0.490364298916732 0.508049320574721 0.529278478665006 0.500375766922311 0.480452979185415 0.480452979185415 0.480452979185415 0.491379095294569 0.480452979185415 0.480452979185415 0.484484365294591 0.492775690477471 1 1 - 22064797 22064828 22064812.333 22064748 22065146 - gene protein_coding_gene FALSE TRUE AT1G59930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G59920.1); contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF14) -2.86544243137053 -19.1092984901847 3.23143811163062e-08 0.000236444326628012 12.4605753358366 9.95593982088132 -2.86544243137053 0.193909488965696
AT2G36490_at 4.58179620744969 5.42043665208251 6.7418978959396 7.33201191345184 8.02201580505128 7.48300991460951 4.16398181889111 3.95492913860794 4.42163502578409 4.45920166566185 7.23951828161599 7.27068209524571 7.60455263418889 7.71185060876763 6.68755160149375 8.02211835712435 7.0793879823831 7.78679988825733 4.19298323560876 0.224135600032843 0.21970292016072 0.231134969949048 0.219368535098043 0.217780995772179 0.224288655627970 0.221950788203980 0.220041902489001 0.218669267907062 0.222022264323634 0.215235946658035 0.215520959524575 0.222035707628329 0.219928084851100 0.215235946658035 0.218997038451152 0.221211321958319 0.215235946658035 0.216796162161401 2 2|0 -|/ 15316018 15316835 15316467.111 15315100 15321351 - gene protein_coding_gene FALSE TRUE AT2G36490.1 ROS1 (repressor of silencing1) A repressor of transcriptional gene silencing. Functions by demethylating the target promoter DNA. Interacts physically with RPA2/ROR1. Identical to Protein ROS1 (EC 3.2.2.-) (Repressor of silencing 1) (DEMETER-like protein 1) (ROS1) [Arabidopsis Thaliana] (GB:Q9SJQ6;GB:Q7Y1X6); similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT3G10010.1); similar to DME (DEMETER) [Arabidopsis thaliana] (TAIR:AT5G04560.2); similar to Os01g0217900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042408.1); similar to putative endonuclease III protein [Ipomoea trifida] (GB:AAS79601.1); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 2.96590781672747 19.0096686127831 3.37344929027941e-08 0.000246801550076842 12.4483473437475 11.8541337466702 2.96590781672747 0.203718692023200
AT1G30530_at 6.15986361820738 6.36486641582059 4.58824704576981 4.64819666729322 4.29032898575541 4.23893163808573 7.25895544937577 7.13104227664687 6.75856332357085 7.46677909010817 6.00927754517482 7.68549572031369 6.2279130029999 6.27285482169555 6.81577925471462 6.99744750160631 5.61978871694884 5.87909620743926 6.63200089492579 0.251868739445915 0.243699854386083 0.267965497948535 0.266877924598490 0.251734432748904 0.247739882461477 0.259509750504072 0.260693748985807 0.252527502461483 0.243699854386083 0.251510512009328 0.249480210885953 0.250261826206162 0.248889304466776 0.247399269213484 0.243699854386083 0.250886800112914 0.243842115252911 0.243699854386083 1 1 + 10815788 10816237 10816009.5 10814641 10816565 + gene protein_coding_gene FALSE TRUE AT1G30530.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At1g30530 gene encodes a UDP-rhamnose:flavonol-3-O-rhamnosyltransferase (UGT78D1) attaching a rhamnosyl residue to the 3-O-position of the flavonols kaempferol and quercetin Identical to Anthocyanidin 3-O-glucosyltransferase (EC 2.4.1.115) (Flavonol-3-O- rhamnosyltransferase) (UDP glucose:flavonoid 3-O-glucosyltransferase) (UGT78D1) [Arabidopsis Thaliana] (GB:Q9S9P6;GB:Q8LAI9); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G17050.1); similar to UDP-glucose:flavonoid 3-O-glucosyltransferase [Vitis vinifera] (GB:BAB41020.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.40062351447996 -18.8860969174274 3.55936020722575e-08 0.000260367199158564 12.4329646906682 12.2805061950676 -1.40062351447996 0.0439925144388230
AT4G18970_at 4.74757763109542 5.37333585646004 1.94951738528426 2.00543884379553 2.05046054521002 2.31769552525087 5.56757616996831 5.71294862488816 8.139140843226 6.84320439303591 7.54110084016462 8.76273832268424 6.76950404383561 6.76223347725487 8.61940492790296 7.76015640386641 3.33768180177448 6.77826194300232 8.45960988381988 0.319803751254908 0.324832773125551 0.346580896292077 0.350203205853156 0.34507496614666 0.336889556601854 0.319803751254908 0.319803751254908 0.324449456407177 0.326293276659434 0.319803751254908 0.320790247471946 0.319803751254908 0.322394908258858 0.319803751254908 0.319803751254908 0.32973063739836 0.326687544967996 0.319803751254908 4 4|0 -|/ 10389327 10390073 10389682.1 10389122 10390928 - gene protein_coding_gene FALSE TRUE AT4G18970.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G45670.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -2.02109065784219 -18.8242772794061 3.65663893481981e-08 0.000267446571692721 12.425177950232 11.1432539527881 -2.02109065784219 0.120797640817692
AT2G17840_at 10.2694571160370 10.4703998081681 10.0005150444115 10.2252559761971 10.4341534177765 10.2610730605379 8.3439087587902 8.34992413032168 7.20951513554745 6.90602420698552 8.52069227729543 8.76321266746247 9.2751904732375 9.04975829402269 8.54126338794603 10.4493558475836 9.33912813636865 8.99816322135306 6.99618942107351 0.160199807178136 0.161332251706175 0.159587335877653 0.162285851764269 0.160038011997716 0.160364732849245 0.169184192377645 0.167454920714540 0.180677991122619 0.170597548033446 0.160697758287301 0.157964568811426 0.155801293074630 0.157661114117121 0.174981031177484 0.157661654240061 0.165574696454452 0.16009674795303 0.171566366227543 2 2 - 7763017 7764095 7763355 7762687 7764934 - gene protein_coding_gene FALSE TRUE AT2G17840.1 ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis. similar to senescence/dehydration-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G35985.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) 1.47583976917900 18.5904738336222 4.05233920145679e-08 0.000296347565802535 12.3951657177634 17.8715051437104 1.47583976917900 0.0601671637723003
AT1G04680_at 7.82611221765274 7.86689099044749 4.46234715305103 4.53390341620297 5.46761763752463 5.67704811869893 8.17240956832823 8.45171735078367 9.57686977048674 8.7020417526883 9.92259242645497 10.2172399995576 8.33638858218119 9.3781969757135 9.9418054561083 8.02732527755543 7.1063823469581 9.0160001624176 8.49289205076645 0.213999379611607 0.212923622452976 0.245944772361610 0.237129017762023 0.219936904361839 0.239560441291037 0.209590837706599 0.209590837706599 0.218455102859075 0.209590837706599 0.209590837706599 0.214982371381637 0.214665573747164 0.214456701344083 0.212101266126262 0.21111601025505 0.217781005815425 0.209590837706599 0.214265269696240 1 1|0 -|/ 1304066 1304900 1304487.1 1303528 1307881 - gene protein_coding_gene FALSE TRUE AT1G04680.1 pectate lyase family protein Identical to Probable pectate lyase 1 precursor (EC 4.2.2.2) (Pectate lyase A1) [Arabidopsis Thaliana] (GB:Q940Q1;GB:O23017;GB:O23666); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G07010.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13710.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.48737328585623 -18.5730160058708 4.08375159531709e-08 0.000298603916649586 12.3928884298276 15.5158437705940 -1.48737328585623 0.0620726528548798
AT3G54090_at 6.49951755213604 6.52269545351592 5.1291745582439 5.3041228658108 4.87644371713579 4.89099771544895 5.82393734270177 5.98096420174004 5.79390296564174 5.7903676023974 3.52912931962078 4.13169024490119 4.280604306611 3.68962302068829 5.15935277447371 5.54165316913848 5.31961940802993 4.50907126589434 6.61584785092358 0.231964149206638 0.232792431611889 0.231031523062331 0.232583447311654 0.234517350605464 0.240097081420245 0.234255084181964 0.235929474126611 0.237671967178262 0.230959208848130 0.235310189152362 0.231953115502772 0.241131065498354 0.23335899438057 0.235034934250709 0.230407314520507 0.243835892522979 0.242861496699173 0.238711921352038 3 3 + 20040233 20040749 20040541.636 20039102 20040964 + gene protein_coding_gene FALSE TRUE AT3G54090.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G69200.1); similar to Os01g0851000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044818.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT81682.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -1.35160356217405 -18.4320411985240 4.34761066275388e-08 0.000317853815553936 12.3743101237317 10.9218812150036 -1.35160356217405 0.0409570994981291
AT1G22770_at 9.6901620266563 9.93745423371561 9.78333567727566 9.84355150209686 10.2925245841927 10.0229476720191 7.77268805603437 7.88306352464599 6.4563443154132 6.70504013937186 8.29729118388765 8.22697820727427 8.51218858927142 8.64160169584843 8.13978200545143 7.61375448282818 8.57168940184669 8.49038552284274 6.23880181743993 0.197303590738372 0.202554678712370 0.198013340227402 0.197475300066537 0.202819799335394 0.206331079835943 0.197073235847202 0.195994944624869 0.215122920221543 0.221671582414387 0.203013162530954 0.203689726030858 0.196390007148527 0.195994944624869 0.198784435487938 0.199142420964671 0.207938258573447 0.195994944624869 0.213850901059851 1 1|0 +|/ 8066712 8067406 8067121.3 8061833 8067705 + gene protein_coding_gene FALSE TRUE AT1G22770.1 GI (GIGANTEA) Together with CONSTANTS (CO) and FLOWERING LOCUS T (FT), GIGANTEA promotes flowering under long days in a circadian clock-controlled flowering pathway. GI acts earlier than CO and FT in the pathway by increasing CO and FT mRNA abundance. Located in the nucleus. Regulates several developmental processes, including photoperiod-mediated flowering, phytochrome B signaling, circadian clock, carbohydrate metabolism, and cold stress response. The gene's transcription is controlled by the circadian clock and it is post-transcriptionally regulated by light and dark. Identical to Protein GIGANTEA (GI) [Arabidopsis Thaliana] (GB:Q9SQI2;GB:O64381;GB:O80545;GB:Q9S7N0); similar to (GB:ABE81212.1); similar to (GB:AAT79487.1); similar to (GB:AAW66945.1) 1.50486401369051 18.3678815462775 4.47395635052072e-08 0.000327046209223065 12.3657422456047 16.7924347313619 1.50486401369051 0.0669419276491146
AT1G27730_at 7.92779442691327 8.26035222332256 9.15632920994932 9.3196963347755 8.11503263806727 7.85045772431525 3.44969067689893 3.43565950462022 4.93401183833688 3.30020816204101 3.87116805355381 4.38468482102964 3.38897705158025 4.31656752373476 3.54159466639689 4.08060383765589 3.75462716052353 4.12918648401327 2.59042580343097 0.242412440706793 0.226431177737222 0.224868110150787 0.226760535793759 0.231172477256008 0.235614634356924 0.231343999808872 0.227054828969311 0.237335499745318 0.221094909069484 0.220037707331402 0.220037707331402 0.222355078168404 0.231856582474066 0.229977070810658 0.220037707331402 0.232270372709153 0.222003316440207 0.235336048506387 1 1 - 9648309 9648835 9648552.364 9648128 9649060 - gene protein_coding_gene FALSE TRUE AT1G27730.1 STZ (SALT TOLERANCE ZINC FINGER); nucleic acid binding / transcription factor/ zinc ion binding Related to Cys2/His2-type zinc-finger proteins found in higher plants. Compensated for a subset of calcineurin deficiency in yeast. Salt tolerance produced by ZAT10 appeared to be partially dependent on ENA1/PMR2, a P-type ATPase required for Li+ and Na+ efflux in yeast. The protein is localized to the nucleus, acts as a transcriptional repressor and is responsive to chitin oligomers. similar to C2H2, nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04340.1); similar to zinc finger protein PIF1 [Nicotiana benthamiana] (GB:AAQ54303.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 1.5836078503564 18.2405128082289 4.7371071452696e-08 0.000346235161247755 12.3485208731844 10.9601973262314 1.5836078503564 0.078826402064971
AT2G36220_at 8.30057040192739 8.59095021596044 8.98316921375183 9.32955968823702 9.7385991873780 9.69548944190146 7.43584617769354 7.72613347139037 5.51038261743636 5.57451145860254 7.60643478703829 7.3559903086694 7.79375265962433 8.03576490928463 7.40274912683227 7.57141908006622 7.86042095219808 7.19735913304494 5.78219960418925 0.198033137345395 0.200230998886879 0.202056806287111 0.209401691669513 0.209393413201136 0.207516022435869 0.195325788125409 0.200548983563530 0.249658904414976 0.226922293820973 0.202437172395735 0.197570412254802 0.196017225778106 0.195325788125409 0.204781982163721 0.196647138793644 0.196047262578687 0.207800213928552 0.231043067507388 2 2 + 15199829 15200372 15200043 15199559 15200777 + gene protein_coding_gene FALSE TRUE AT2G36220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52710.1); similar to Os11g0153300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065777.1); similar to calcium/calmodulin protein kinase 1 [Nicotiana tabacum] (GB:AAN71903.1) 1.70197556279643 18.2256688539795 4.76888390482524e-08 0.000348510035764629 12.3464952390585 15.3377151896154 1.70197556279643 0.0932621688728528
AT3G02380_at 7.94654308278798 8.12262878402265 7.54319751554318 7.4136227917672 7.50296722670301 6.93366796836307 11.2690145178106 11.1551268668499 10.6472160723365 10.8594338291035 9.11267906087722 9.5664336977250 9.5897682716981 9.38380734965844 9.05972106303457 10.6374714585680 9.66845503112984 9.03073552255896 11.1455935439996 0.188200502804076 0.177398829993930 0.188986751641391 0.198203349050440 0.187873162722318 0.192720546309932 0.170207528134137 0.173132492091624 0.174106074769255 0.173101389424297 0.175686826981208 0.169603552603930 0.170952425170757 0.173115893101114 0.168243634011985 0.172386970416320 0.173268909467830 0.172716924860434 0.173108959252310 3 3|0 -|/ 487446 488103 487759.556 487243 488700 - gene protein_coding_gene FALSE TRUE AT3G02380.1 COL2 (CONSTANS-LIKE 2); transcription factor/ zinc ion binding homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins Identical to Zinc finger protein CONSTANS-LIKE 2 (COL2) [Arabidopsis Thaliana] (GB:Q96502); similar to CO (CONSTANS), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15840.1); similar to Col-2-like protein [Brassica rapa] (GB:AAR90093.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -1.82645582692363 -18.2033817432908 4.8170422083665e-08 0.00035198127416534 12.3434465401793 18.680953634424 -1.82645582692363 0.107359161579249
AT2G18170_at 8.15358297660074 8.09530338589728 8.3029215865676 8.20387533424848 8.59300879830471 8.8119433494329 6.60116181396213 6.12707310457494 4.32719164065092 5.15828351838067 6.5539003633129 6.50083218176796 7.17025660880869 6.73719804848573 6.79892677072587 6.49610762313788 7.92805329056073 6.21493538348411 4.45665872665857 0.209413197382305 0.205375587205661 0.211107755477550 0.208143941328666 0.205340644302792 0.218175746275205 0.215475968927975 0.238834229134219 0.224615761161297 0.211205115195650 0.216969187272320 0.208526999581966 0.211911536718633 0.215320262987776 0.209966628478462 0.205340644302792 0.207610599638082 0.209139602553648 0.229813396370522 2 2 - 7915270 7915761 7915463.091 7914886 7917005 - gene protein_coding_gene FALSE TRUE AT2G18170.1 ATMPK7 (MAP KINASE 7); MAP kinase/ kinase Identical to Mitogen-activated protein kinase 7 (EC 2.7.11.24) (MAP kinase 7) (AtMPK7) (MPK7) [Arabidopsis Thaliana] (GB:Q39027;GB:Q56W33;GB:Q9SI14); similar to ATMPK14 (Arabidopsis thaliana MAP kinase 15), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G36450.1); similar to ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G10210.2); similar to double HA-tagged mitogen activated protein kinase 14 [synthetic construct] (GB:ABG54341.1); similar to double HA-tagged mitogen activated protein kinase 7 [synthetic construct] (GB:ABG54334.1); similar to putative mitogen-activated protein kinase MAPK [Prunus armeniaca] (GB:AAD32204.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 1.69315263438421 18.1987710589738 4.82707267243368e-08 0.000352665929448005 12.3428147302342 13.5848109165397 1.69315263438421 0.0925315233113598
AT1G14840_at 5.26936010444317 5.1776181494805 3.25547473804704 3.28862266907692 4.52441004990395 4.20138079527006 6.92583307164226 6.76873212158342 6.20952807428223 6.07032052815366 5.65710778128124 6.75471486689514 5.56079971791366 5.39046370749772 6.32011110841786 5.73425005743295 4.61119077172681 4.8216498432808 6.72269405796693 0.255575255464297 0.244715737903008 0.247815092289460 0.260792441794294 0.240328037225315 0.251441245315531 0.245424968216683 0.257666717851791 0.249767689488061 0.247040231692650 0.24454274274984 0.244343869794282 0.241842756143197 0.261626659899587 0.242710805099541 0.246851592183204 0.243012929929388 0.245472732013845 0.241972772731062 1 1|0 -|/ 5112424 5113129 5112852 5112079 5115423 - gene protein_coding_gene FALSE TRUE AT1G14840.1 ATMAP70-4 (microtubule-associated proteins 70-4); microtubule binding Encodes a microtubule associated protein (MAP70-4). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G68060.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) -1.47290435185401 -18.1934182863804 4.83874679531391e-08 0.000353470453397681 12.3420807545817 10.8966623967343 -1.47290435185401 0.0644135354755062
AT2G15830_at 6.34582586287248 6.48363161349678 6.76860050599569 6.77182235962394 8.22217926854056 7.48295922288688 4.90657923216107 5.02954641395255 5.76368208182631 5.18918197279027 8.03940321143023 7.78934846118226 7.42600542687704 8.0556447010659 7.70784144949756 7.65911237023742 7.6456872992545 7.8637822174423 4.87040364596491 0.273201711413983 0.266493156265520 0.266493156265520 0.276877018224055 0.266493156265520 0.279289429394214 0.278332428973610 0.274882132519808 0.309878434380573 0.267915082185376 0.277377656427941 0.266493156265520 0.266493156265520 0.266493156265520 0.266493156265520 0.266493156265520 0.266493156265520 0.271854348741305 0.277867383512779 2 2 + 6901259 6901335 6901302.875 6901200 6901633 + gene protein_coding_gene FALSE TRUE AT2G15830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33960.1) 2.05946256695198 18.1618372024478 4.90826838209356e-08 0.000358499922628113 12.3377398998960 13.0252809144332 2.05946256695198 0.131859024534024
AT4G33790_at 3.98670113516405 4.54356761262004 7.30020786512763 7.40033019007499 8.43816016826134 8.44202167411501 7.84437588511962 8.06872742021168 9.61382067756784 7.86500959635783 11.2175043196655 10.5421801467724 10.3411767509925 10.8502734908552 10.7055814351865 10.2673699431730 8.79931245591324 10.4305212817985 8.35910910119223 0.225045998692746 0.240605322750807 0.211119315933136 0.217707693274970 0.199615597345682 0.194259149117117 0.204297044576433 0.208735224852178 0.19865384460658 0.211179670266233 0.206985878881860 0.202900711295714 0.195715543085453 0.201763111000199 0.204884172019072 0.202079194473523 0.217718981430645 0.206527260125982 0.197749908874315 4 4|0 -|/ 16204341 16205172 16204824.6 16204159 16207950 - gene protein_coding_gene FALSE TRUE AT4G33790.1 acyl CoA reductase, putative similar to acyl CoA reductase, putative / male-sterility protein, putative [Arabidopsis thaliana] (TAIR:AT5G22500.1); similar to acyl CoA reductase [Hevea brasiliensis] (GB:AAR88762.1); contains InterPro domain Male sterility; (InterPro:IPR004262); contains InterPro domain Male sterility C-terminal; (InterPro:IPR013120) 1.78296524039392 17.9539380749165 5.39475140727072e-08 0.000393978695272981 12.3087124563402 16.5064547120454 1.78296524039392 0.105332344522690
AT4G25480_at 7.45283414846499 7.75817379193284 7.52173473105099 7.60356832505729 8.10549810706918 8.13365045329088 5.87558674095622 6.07328793952626 4.90296399991195 3.88742702296631 6.23524702590997 6.34423791459533 6.87917157933858 6.38810218674041 5.78581894042014 4.70368808418655 6.70839745336609 5.79742187103703 3.95882962504145 0.226186227896431 0.224157653569983 0.224269105118036 0.229866772538362 0.229463062872891 0.231604176371248 0.225121800416221 0.231495678640855 0.240312572518237 0.229827855161244 0.227562628764839 0.222802230359169 0.222802230359169 0.242531721324546 0.236083407771034 0.226233664361203 0.237025792580551 0.232751748616082 0.224316959390543 4 4 - 13018415 13018923 13018608.909 13018224 13019131 - gene protein_coding_gene FALSE TRUE AT4G25480.1 DREB1A (DEHYDRATION RESPONSE ELEMENT B1A); DNA binding / transcription factor/ transcriptional activator encodes a member of the DREB subfamily A-1 of ERF/AP2 transcription factor family (CBF3). The protein contains one AP2 domain. There are six members in this subfamily, including CBF1, CBF2, and CBF3. This gene is involved in response to low temperature and abscisic acid. Identical to Dehydration-responsive element-binding protein 1A (DREB1A protein) (C- repeat-binding factor 3) (C-repeat/dehydration-responsive element- binding factor 3) (CRT/DRE-binding factor 3) (DREB1A) [Arabidopsis Thaliana] (GB:Q9M0L0;GB:O65612;GB:O82131;GB:Q9SAZ3); similar to CBF2 (FREEZING TOLERANCE QTL 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G25470.1); similar to DREB1A [Nicotiana tabacum] (GB:ABD65969.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.45333133243651 17.927025900966 5.46157025909817e-08 0.000398803860319349 12.3048967581064 12.4930422036298 1.45333133243651 0.0647065605008619
AT2G39920_at 10.3759509698576 10.4588584421406 10.6415426664749 10.4120097288754 10.9123389210689 10.7200187013311 8.89395625460639 8.6202496275152 7.93257392632804 8.25472193757582 9.15810296368882 9.26491631529374 8.96035837852879 9.6115697388951 9.2503415988248 8.75352349965026 9.69359046047426 9.3479204530491 5.81910969035754 0.146127593976392 0.141262627022123 0.152474232171409 0.149067219834315 0.146803479302447 0.146233515499171 0.149169816759729 0.149532170029111 0.174530959642115 0.152630979506695 0.145922443620692 0.141866276333558 0.147749858964583 0.143610235336869 0.141262627022123 0.146799905574560 0.150176682952253 0.148375522336741 0.186607119464544 2 2 - 16670310 16670987 16670608.455 16670097 16671616 - gene protein_coding_gene FALSE TRUE AT2G39920.1 acid phosphatase class B family protein Identical to Hypothetical protein At2g39920 [Arabidopsis Thaliana] (GB:O04195); similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G25150.1); similar to HAD superfamily (subfamily IIIB) phosphatase, putative [Medicago truncatula] (GB:ABE88130.1); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519) 1.50189779443556 17.9208179715039 5.47711441574043e-08 0.000399884123493208 12.3040146600074 18.4246201360526 1.50189779443556 0.0716582989590389
AFFX-r2-At-Actin-5_s_at 10.0380129103667 10.0373044147293 10.9489878445659 10.9100463448429 10.9514620106035 11.0582918873632 10.0470674685517 10.3652782758078 9.09507735672856 8.91401089157277 11.0041370863074 10.7737325166205 11.2222094636637 10.8562965383231 11.0724949286939 10.7414538035126 10.8045518410910 10.6948213698991 8.85925582971934 0.100134879563037 0.103282882082240 0.102189178259803 0.104666262743044 0.0998187100634 0.104880073216681 0.101774568897721 0.099263937232885 0.121453567182008 0.109575493892874 0.102790901013229 0.101505194371000 0.105258081822282 0.104293499974991 0.102147402338835 0.101484797280360 0.102429895605691 0.104153932314238 0.108859250364758 NA NA NA NA NA FALSE FALSE 1.39268937766019 17.6774271914873 6.12728494958645e-08 0.000447291801319811 12.268855587649 20.4707198376976 1.39268937766019 0.0584780574963723
AT1G19270_at 7.79686249318213 7.81865321801124 8.69749827512731 8.48839951589364 8.0866809518372 7.99778146284307 5.4313504771864 5.23968976958517 5.26524707016177 5.33157331071486 5.85298462354216 6.16078734344698 5.79024348542631 6.66446898504398 5.45167453865599 6.29429008801378 6.5967315634435 6.75440089367463 5.17452225463106 0.224362187226369 0.225173222961381 0.232125758779884 0.227340834426653 0.227224206184448 0.232892115885050 0.228983908946438 0.230841056173688 0.236303615348052 0.231326062499597 0.226413610752274 0.227358408453331 0.226440900051645 0.225225488669854 0.231358313680414 0.225392917262189 0.224988044592693 0.225899675726665 0.231720249145452 1 0|1 /|+ 6665127 6665760 6665520.75 6662492 6666019 + gene protein_coding_gene FALSE TRUE AT1G19270.1 ubiquitin interaction motif-containing protein / LIM domain-containing protein similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36860.2); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34242.1); similar to Os06g0182500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056985.1); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34243.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 1.34226727012705 17.5564950399514 6.48203894288128e-08 0.000473124022440904 12.2509605359060 13.1710204714542 1.34226727012705 0.0515790210150776
AT3G29670_at 5.82127722713955 5.84181396881485 4.73038909948096 4.97740932968424 5.7176205596475 5.64905779744345 7.00530158558384 6.85897290711928 6.93480403227065 6.7190310708508 5.53430782865483 5.2296336918992 4.85882334749702 5.33455649495858 5.13740077559414 5.80839458492989 5.87638022752042 5.09081788630991 7.12230325284192 0.23534185869402 0.235778677982077 0.229459659465143 0.224655578773879 0.240396252381702 0.236262116927298 0.228033059864527 0.22947105338162 0.228748817960233 0.225247057100262 0.232665774821540 0.224171667137953 0.237141609472801 0.232950957627267 0.229489811071197 0.228517126063 0.239198813646496 0.232222876193845 0.226352034927675 3 3 + 11531213 11531748 11531459.727 11530351 11531829 + gene protein_coding_gene FALSE TRUE AT3G29670.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G29635.1); similar to AT5g39050/MXF12_60 [Medicago truncatula] (GB:ABE91277.1); contains InterPro domain Transferase; (InterPro:IPR003480) -1.33990616145882 -17.5530525498392 6.49246770536585e-08 0.000473820293137599 12.2504469075618 11.9673147126934 -1.33990616145882 0.0512059616049121
AT2G31890_at 6.13322114638065 6.32535618507596 5.40242314685926 5.45972390722494 5.66246510139301 5.68869073625286 6.47956196905174 6.449639826796 5.94424703456545 6.81888764532933 4.05333648338702 4.13235327137548 4.6804944883964 4.18329441820526 5.59369651625351 5.70619197119387 5.67137215309037 4.75117875095122 6.88988929810982 0.170628490529176 0.170628490529176 0.176663294569730 0.17511785175429 0.171604643818861 0.175264570376161 0.172476345618448 0.170628490529176 0.186772648059447 0.180260273262131 0.175880314804989 0.1852624791834 0.170628490529176 0.172092810602589 0.177708792950712 0.173084710978695 0.172926826710149 0.173223701232878 0.179792015950949 2 2|0 -|/ 13564445 13565037 13564768.2 13564008 13566844 - gene protein_coding_gene FALSE TRUE AT2G31890.1 similar to Os03g0425000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP20833.1); contains InterPro domain RAP domain; (InterPro:IPR013584) -1.24906864747757 -17.3646298136327 7.09289414577032e-08 0.00051756848581686 12.2219709530650 11.6488841270167 -1.24906864747757 0.0353736469363549
AT4G12970_at 5.58902378407789 5.53666270995512 2.28187050669860 2.74454432115665 3.65168757685038 3.29912318406084 4.95817690895611 4.77163771168485 5.52192380253917 5.75609343405662 4.40900407299755 6.8686550737024 4.58000211529747 4.4263197500858 6.7291595430779 5.00975463392202 2.96412476447800 4.01603681129024 7.02156123458127 0.258626973085521 0.242340401955916 0.261202830084026 0.265281029064954 0.245236740930487 0.242019049337412 0.241388112469918 0.247103244118735 0.242432100373627 0.243315546407916 0.238874591474876 0.246618094350174 0.24059225797471 0.242042146401016 0.243166132574549 0.246320574373472 0.271495343299762 0.238874591474876 0.247927548276188 4 4|0 -|/ 7586264 7586741 7586411.111 7586140 7586846 - gene protein_coding_gene FALSE TRUE AT4G12970.1 similar to Os01g0914400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045180.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75419.1) -1.72202313813140 -17.2725338643953 7.40872612905099e-08 0.00054054065837556 12.2077892660739 9.59171163092945 -1.72202313813140 0.106102023600769
AT3G10720_at 8.55371695759896 8.90659417083977 5.35984158849209 5.72880226151038 7.24000670854329 7.1921128721757 9.23256695155512 9.33466052211626 10.0864228293506 9.79655260082006 10.0283730291082 10.4709682533608 9.54129813087984 9.5043141915631 10.1999089789543 9.20823656345817 7.4516832654023 9.52770347908858 10.1362334086711 0.155551810373985 0.159913221222477 0.194148698880566 0.190423083319305 0.167759000376525 0.174022968202811 0.16148529423775 0.161320818060776 0.160117713543844 0.160633469128145 0.158558936491360 0.16248730762631 0.162786890755723 0.160205977235038 0.160502984415569 0.158370915482609 0.169846716058753 0.158828977078804 0.156666449372737 3 3 - 3354667 3355417 3354932.818 3354452 3357619 - gene protein_coding_gene FALSE TRUE AT3G10720.1|AT3G10720.2 pectinesterase, putative similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to pectin methylesterase isoform alpha [Vigna radiata] (GB:AAF35897.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070)|similar to pectinesterase, putative [Arabidopsis thaliana] (TAIR:AT5G04970.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os01g0311800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042865.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:AAT38097.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -1.57076800132542 -17.0603250427818 8.19798260407007e-08 0.000598042830966912 12.1744347740463 17.4425195954827 -1.57076800132542 0.090481482042516
AT4G30270_at 10.3891906490011 10.8354869320969 12.7989263124889 12.9032706779371 12.2584633829780 12.4382803043756 9.12626136552353 9.43509105574163 10.3820355687985 10.2055306947110 11.7338921400244 9.07288636278855 11.6480039722531 11.6453053474185 9.4759689522055 10.7136637896637 11.5124775202559 11.8875006033994 10.3385915935952 0.101997062174180 0.0995679516269 0.103480189929569 0.102536955926840 0.0995679516269 0.102245224540576 0.106488654194690 0.103792768006133 0.106696465747087 0.0998011274409507 0.101170148854613 0.107366702444624 0.101254956868314 0.0999778767075836 0.103405482735785 0.0995679516269 0.103823063025663 0.0995679516269 0.100462959707333 4 4|0 -|/ 14819470 14820212 14819771.5 14819198 14820598 - gene protein_coding_gene FALSE TRUE AT4G30270.1 MERI5B (MERISTEM-5); hydrolase, acting on glycosyl bonds encodes a protein similar to endo xyloglucan transferase in sequence. It is also very similar to BRU1 in soybean, which is involved in brassinosteroid response. Identical to Xyloglucan endotransglucosylase/hydrolase protein 24 precursor (EC 2.4.1.207) (At-XTH24) (XTH-24) (Meristem protein 5) (MERI-5 protein) (MERI5 protein) (Endo-xyloglucan transferase) (Xyloglucan endo-1,4-beta-D-glucanase) (XTH24) [Arabidopsis Thaliana] (GB:P24806;GB:O64956;GB:Q39148;GB:Q39149;GB:Q41904;GB:Q8LDQ0); similar to TCH4 (TOUCH 4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G57560.1); similar to putative xyloglucan endotransglycosylase [Cucumis sativus] (GB:CAD87535.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 1.65286035957682 17.0518316873364 8.23146918645597e-08 0.000600403362460098 12.1730798128081 21.9080871458692 1.65286035957682 0.100577075147945
AT2G29120_at 8.68808962333885 8.80901013510301 7.85419667177982 7.91745885373804 7.95279236444918 7.75679812022477 7.21158490827991 7.00268643225969 7.47653712215153 6.10854911761353 4.40201779329458 3.82049365608291 4.33256915610892 4.91410033030302 3.49393909656342 3.68506538551114 4.38181523184693 4.04916818915882 6.48387904531929 0.235098712316098 0.235098712316098 0.237029856398986 0.236452329039894 0.240298671915662 0.243223297398907 0.237799023741723 0.243073748460203 0.260579037470876 0.235098712316098 0.238365234162297 0.242507078803119 0.243954039711205 0.247657223817941 0.252478324598576 0.251017824047691 0.246416705038860 0.242450824513909 0.235098712316098 2 2 - 12518605 12519233 12518839.727 12518369 12522972 - gene protein_coding_gene FALSE TRUE AT2G29120.1 ATGLR2.7 (Arabidopsis thaliana glutamate receptor 2.7) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GLR2.7) [Arabidopsis Thaliana] (GB:Q8LGN0;GB:O81080;GB:Q8RY02); similar to ATGLR2.2 (Arabidopsis thaliana glutamate receptor 2.2) [Arabidopsis thaliana] (TAIR:AT2G24720.1); similar to ATGLR2.8 (Arabidopsis thaliana glutamate receptor 2.8) [Arabidopsis thaliana] (TAIR:AT2G29110.1); similar to ATGLR2.9 (Arabidopsis thaliana glutamate receptor 2.9) [Arabidopsis thaliana] (TAIR:AT2G29100.1); similar to Avr9/Cf-9 rapidly elicited protein 141 [Nicotiana tabacum] (GB:AAP03877.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); similar to Glutamate receptor 2.5 precursor (Ligand-gated ion channel 2.5) (GB:Q9LFN5); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -1.30614513118341 -16.8424342849041 9.10733093510235e-08 0.000664197645097014 12.1391756054725 13.3113527385901 -1.30614513118341 0.054909399695445
AT1G58270_at 7.17238050997467 7.92985011529575 1.12731209954234 1.72920765702943 2.55196819626722 2.14876271965508 6.9360374526056 6.56894697264001 5.02549423877281 5.37022279945979 5.73096080757714 7.42610855100255 6.04323518099098 4.85987690518691 6.22413184457985 2.85236967764124 3.50983888951992 6.13436326660079 4.83425626235997 0.270336242295430 0.260268998886356 0.280572617371642 0.270083584460548 0.268477849474265 0.265734960088548 0.257253431908772 0.263584826472618 0.268886375697188 0.259297750928279 0.258508035053077 0.257253431908772 0.257253431908772 0.265218582268361 0.271150444004624 0.261865873161721 0.257253431908772 0.274758618314992 0.259410044324170 1 1 - 21616082 21616759 21616406.636 21615781 21617782 - gene protein_coding_gene FALSE TRUE AT1G58270.1 ZW9 ZW9 mRNA, complete cds similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G28220.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -2.49576911049113 -16.7622890101040 9.4696934002018e-08 0.000690530042742716 12.1259410968183 9.73269241900207 -2.49576911049113 0.192189537472483
AT2G21130_at 8.21996874702609 8.48737475339866 7.39081744357725 7.473676815207 8.7777505118428 9.01981041825862 4.93662912178098 5.21145989761279 4.56448174380303 4.13513694094072 5.77867173479361 5.74403522473364 5.95783861348382 6.04277981285923 5.36257467091053 4.80039486081681 6.06574325574881 5.7037563086668 3.92917765044328 0.352751961260734 0.352691318006019 0.339119272859718 0.343896117937428 0.362437680814249 0.35703832133329 0.336262822805144 0.334929020545586 0.340274046252396 0.343326076372413 0.332439945200094 0.332439945200094 0.332439945200094 0.335575705277248 0.332439945200094 0.335707939125914 0.340001978395279 0.332439945200094 0.339909255760187 2 2 - 9062724 9063200 9062955.273 9062479 9063313 - gene protein_coding_gene FALSE TRUE AT2G21130.1 peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase Identical to Peptidyl-prolyl cis-trans isomerase CYP19-2 (EC 5.2.1.8) (PPIase CYP19-2) (Rotamase cyclophilin-6) (Cyclophilin of 19 kDa 2) (Cyclophilin-2) (CYP19-2) [Arabidopsis Thaliana] (GB:Q9SKQ0;GB:O22516); similar to ROC1 (rotamase CyP 1), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT4G38740.1); similar to cyclophilin [Thellun (GB:AAR27291.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 1.46201559956138 16.7606166470969 9.47742413074038e-08 0.000690998993372281 12.1256633909140 12.3854725079117 1.46201559956138 0.0797736203839367
AT2G27200_at 7.34982492506919 7.44646397526091 7.87637799961749 7.57944830318235 8.03443551125673 8.21537791016705 5.04816527194433 5.16440324722923 4.97406341122911 4.29087331566072 5.59385194304651 5.28096464719649 5.82988116967313 6.00587221101128 5.28200344848301 5.41371953627921 6.14695970550349 5.6848089907454 4.53509315771328 0.26445079964981 0.266637954413324 0.270433339647761 0.271067759115465 0.269409364206023 0.267876712645778 0.266123667184290 0.26817432625343 0.272388991571588 0.275398462116537 0.272926042541315 0.265319289964815 0.267271508585745 0.270617414116811 0.268922007915603 0.263846649282163 0.263741248959428 0.269540702144163 0.288086405543798 2 2 + 11634468 11634920 11634694.909 11632495 11635267 + gene protein_coding_gene FALSE TRUE AT2G27200.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT1G08410.1); similar to GTP1/OBG [Medicago truncatula] (GB:ABE78155.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) 1.36447166056897 16.7592481701905 9.4837553447951e-08 0.000691365764635562 12.1254360998749 12.2166959769793 1.36447166056897 0.0656143710954176
AT3G56170_at 8.88827417080422 9.115205241066 9.55418229292108 9.55636674545912 9.72152563401679 9.28103267431224 7.81974974546696 7.65896628740233 6.36913287473275 6.15489482029512 8.04086819739728 7.8750713084652 8.2813074491658 8.53686070029701 7.41876710022432 7.96259503734704 8.68633273219111 7.65215450597625 5.89163037426273 0.168471410394442 0.167515734367886 0.169082186689874 0.169924267119338 0.177617933513469 0.170497557413835 0.176955790709317 0.185871171766743 0.208062727803333 0.190731874642225 0.169907298886987 0.17718202560072 0.167515734367886 0.167515734367886 0.184799590495857 0.16837290138935 0.176264911718488 0.179257480123168 0.191645898605664 3 0|3 /|+ 20854489 20855228 20854854.111 20853556 20855437 + gene protein_coding_gene FALSE TRUE AT3G56170.1 CAN (CA-2+ DEPENDENT NUCLEASE); nuclease Encodes a calcium-dependent nuclease with similarity to staphylococcal nuclease. similar to Ca(2+)-dependent nuclease, putative [Arabidopsis thaliana] (TAIR:AT2G40410.2); similar to putative nuclease [Eucommia ulmoides] (GB:ABA41005.1); contains InterPro domain Thermonuclease active site; (InterPro:IPR002071); contains InterPro domain Staphylococcus nuclease (SNase-like); (InterPro:IPR006021) 1.53795995730595 16.7319319696850 9.61112541593585e-08 0.000700554931567564 12.1208902268110 16.0470615082544 1.53795995730595 0.090152652366474
AT3G13065_at 6.2334248598471 5.75336384783954 4.14653538795061 3.92279052741855 4.53869056979346 4.49172260901356 5.80247905049314 5.1591400717136 5.82422495251733 6.56804239416283 3.88002022950038 3.3487675383901 3.85935858404962 3.24697322350272 3.23874301483706 3.5103784966155 4.08045065104476 3.32121178717676 5.97843418095147 0.32042407411891 0.316610195342497 0.315476950706239 0.321530669258506 0.318131597063706 0.318465092270596 0.325926845689662 0.314782392108746 0.332345180939720 0.327894296976114 0.314782392108746 0.322992356033149 0.319099959678421 0.314782392108746 0.319949991240688 0.315700553163963 0.314782392108746 0.316255650866029 0.320101777292882 3 3|0 +|/ 4189819 4190584 4190207.444 4187768 4190870 + gene protein_coding_gene FALSE TRUE AT3G13065.1 leucine-rich repeat transmembrane protein kinase, putative similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G78980.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91085.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -2.01249820958345 -16.7051302413239 9.73795451759813e-08 0.000709702125242551 12.1164134227595 9.8481709237671 -2.01249820958345 0.144437042418171
AT3G04060_at 5.3333922623063 5.55851019747231 7.38565612210278 7.33266560572102 7.2434487637848 7.69897543986635 3.21519956370872 3.43999497850247 3.14105149611616 3.91524544498756 3.42912893764852 2.51305761278461 3.51303153174621 3.93978800450357 3.01154892951496 3.45925615943438 4.82628980651142 3.79430847672609 3.19634022567541 0.337843823494101 0.334681712336887 0.350027162148522 0.344405269140239 0.343112263425388 0.343867229676718 0.325829088854796 0.325829088854796 0.33895778247057 0.334345391596107 0.325829088854796 0.327034522764980 0.325829088854796 0.325829088854796 0.329536352775066 0.325829088854796 0.325829088854796 0.331542336990446 0.328354475134365 3 3 - 1053672 1054407 1053938.545 1053373 1055170 - gene protein_coding_gene FALSE TRUE AT3G04060.1 ANAC046 (Arabidopsis NAC domain containing protein 46); transcription factor similar to ANAC087, transcription factor [Arabidopsis thaliana] (TAIR:AT5G18270.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 1.58583384623515 16.6964302794942 9.7795244580419e-08 0.000712633947257513 12.1149566956433 9.3901538189923 1.58583384623515 0.0965892495713854
AT1G10140_at 8.50998870912962 8.39263140054657 9.16692662728415 9.17773678067445 9.46757403691126 9.45218121924326 6.1686701030708 6.50524056582706 5.76652589172929 5.48068486260124 6.16334524492772 5.27947095846291 6.49683002859729 6.41040341194806 5.94744431105141 7.05528731176267 7.68324584319462 6.26306886102634 5.74563039395633 0.250594360232121 0.252685397229264 0.264731048058540 0.265346244596710 0.268693847262113 0.268788565881408 0.251238377124220 0.262296898298421 0.258628465024611 0.252836986636376 0.257621831395780 0.256911912651118 0.248651596421275 0.249839750385992 0.253267747457647 0.248651596421275 0.262869551943273 0.254581087742192 0.254933290801366 1 1 - 3322973 3323420 3323206.273 3322804 3323550 - gene protein_coding_gene FALSE TRUE AT1G10140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G58420.1); similar to Os07g0123800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058800.1); similar to Os03g0769700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051398.1); similar to hypothetical protein MtrDRAFT_AC140720g19v1 [Medicago truncatula] (GB:ABE79597.1) 1.33503929249693 16.6940398036401 9.79098122180215e-08 0.000713370891820505 12.1145561286539 14.3934523699027 1.33503929249693 0.0617701435619283
AT3G18250_at 9.03199667787172 9.3453844026052 9.77581421557936 10.1995214045742 8.25121514226133 8.23853315013281 2.54985394299001 2.21606167672496 3.14081326790711 3.59854529800981 2.89865953447954 2.79037738495588 3.30981439904745 3.43837653451272 2.48579344913934 2.43238132511454 4.16112869181752 3.08731676928541 2.40259928585955 0.409434463562292 0.405016879622574 0.411984466088903 0.410309303195729 0.415366752626252 0.416816850733755 0.380184688301151 0.380184688301151 0.388800187074091 0.380366179000741 0.386313223212180 0.380184688301151 0.383918619629955 0.380184688301151 0.380184688301151 0.380184688301151 0.396747100440848 0.380184688301151 0.391871109808717 3 3 - 6258219 6258364 6258297.545 6258073 6258423 - gene protein_coding_gene FALSE TRUE AT3G18250.1 unknown protein 1.67930426510375 16.6842875814791 9.83787584006426e-08 0.000716689254948681 12.1129206090093 10.5124477240772 1.67930426510375 0.107978033749030
AT3G10450_at 5.12479884967714 6.05515803157224 7.76709951904256 7.43462131382605 8.38242819957655 7.8396654177058 3.95995873627461 4.23119088566079 3.16520559362467 4.27487854556201 5.63778793605616 5.81095107885463 5.454074006187 5.78451074962966 5.70906750664037 6.54113622763582 6.7352152429078 6.31632278271013 4.19707291114541 0.289315323986742 0.281426094538467 0.287702208834894 0.295197254859726 0.289043472368412 0.286572206654533 0.288545136242737 0.288422791744585 0.298698174837387 0.285892887555156 0.284312949502759 0.281426094538467 0.281426094538467 0.292663794344628 0.289559746534385 0.281426094538467 0.281426094538467 0.281426094538467 0.281426094538467 3 3 + 3251438 3252299 3251794.545 3249536 3252511 + gene protein_coding_gene FALSE TRUE AT3G10450.1|AT3G10450.2 SCPL7; serine carboxypeptidase similar to SCPL1 (serine carboxypeptidase-like 1), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G36180.1); similar to SCPL2 (serine carboxypeptidase-like 2), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73300.1); similar to SCPL5 (serine carboxypeptidase-like 5), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G73290.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 2.56637891397927 16.6527002519008 9.99149602007815e-08 0.000727780570102492 12.1076081422572 11.2882078898862 2.56637891397927 0.200644049108897
AT1G71880_at 8.62149939700415 8.71806151002466 8.97829822109689 8.96982870405266 9.20750951161516 8.76834415435879 7.47004954149961 7.60417487132562 6.7334087032245 5.7514752869119 7.78391236703574 8.60973576159748 8.00633644693078 8.30738949376063 7.18966771004441 8.54122218950242 7.51654538278076 6.15266411744842 4.66373532308250 0.236781650829784 0.236781650829784 0.245287402127365 0.249826433984972 0.236781650829784 0.244364977171102 0.239087855291471 0.239156618233023 0.260395367327623 0.257029708231038 0.251092471336113 0.236781650829784 0.238923367122099 0.239531244724027 0.264730388245951 0.236781650829784 0.246002001171969 0.255225237679089 0.254656700218409 1 1|0 +|/ 27059095 27059735 27059442.5 27057842 27060003 + gene protein_coding_gene FALSE TRUE AT1G71880.1 SUC1 (SUCROSE-PROTON SYMPORTER 1); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Sucrose transporter gene induced in response to nematodes; member of Sucrose-proton symporter family. Identical to Sucrose transport protein SUC1 (Sucrose permease 1) (Sucrose-proton symporter 1) (SUC1) [Arabidopsis Thaliana] (GB:Q39232); similar to ATSUC6 (SUCROSE-PROTON SYMPORTER 6), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G43610.1); similar to ATSUC5/SUC5 (SUCROSE-PROTON SYMPORTER 5), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G71890.1); similar to SUC2 (SUCROSE-PROTON SYMPORTER 2), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G22710.1); similar to sucrose transporter SUC2 [Brassica oleracea] (GB:AAL58072.1); similar to sucrose carrier [Ricinus communis] (GB:CAA83436.1); similar to sucrose transporter SUC1 [Brassica oleracea] (GB:AAL58071.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) 1.46238828185766 16.6443517994167 1.00325433608153e-07 0.000730670132968177 12.1062002199938 15.2820410495608 1.46238828185766 0.0812162683074024
AT1G17745_at 8.70805785059702 8.59281820856757 10.7212604993273 10.6522016346672 7.57166284835586 7.79741232565946 5.59779623845024 6.34383260092708 3.58401651712485 4.74197970224686 4.99799500383150 7.04040248974466 6.168257509518 6.8980217666899 6.72154138942455 6.39969644409812 6.11129433806432 6.0066321651718 4.70816107262825 0.233246024420128 0.233012358170838 0.239747615219935 0.238914579815567 0.226069985286423 0.226069985286423 0.231212952080192 0.226069985286423 0.231460521205346 0.234700396119627 0.229051572910564 0.226069985286423 0.226069985286423 0.226660442004531 0.226336498246980 0.23063627960868 0.240939980345725 0.227402451621078 0.234726538051976 1 1 + 6104385 6104924 6104585 6100957 6105258 + gene protein_coding_gene FALSE TRUE AT1G17745.1 PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE); phosphoglycerate dehydrogenase encodes a 3-Phosphoglycerate dehydrogenase Identical to D-3-phosphoglycerate dehydrogenase, chloroplast precursor (EC 1.1.1.95) (3-PGDH) [Arabidopsis Thaliana] (GB:O04130); similar to D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative [Arabidopsis thaliana] (TAIR:AT3G19480.1); similar to EDA9 (embryo sac development arrest 9), NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34200.1); similar to D-isomer specific 2-hydroxyacid dehydrogenase, catalytic re (GB:ABE86334.1); similar to H0212B02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68268.1); similar to putative D-3 [Oryza sativa (japonica cultivar-group)] (GB:BAD37553.1); contains InterPro domain D-3-phosphoglycerate dehydrogenase; (InterPro:IPR006236); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) 1.91163457167576 16.4524613755192 1.1029896693237e-07 0.000803197077201518 12.0733892222629 13.5669798936446 1.91163457167576 0.136875450903205
AT3G50210_at 6.57457077416821 7.02684938907142 7.3599106130858 7.53004988389689 8.27856124076142 7.71718876475442 3.72541563408828 3.76973007934886 4.08838325335421 3.84313172374972 5.04857094242263 4.70359466085441 5.40831479191498 5.34563805046887 5.27660138383883 5.33229927991636 5.97960344087281 5.54601235851236 4.43223811712072 0.254683816427423 0.24456783657243 0.250222022230124 0.24621525402461 0.246029750406458 0.247377569939610 0.250561815128582 0.254010732554425 0.256949543258871 0.2554134725938 0.244572998396436 0.24518958370249 0.257270025076543 0.247978800268293 0.24646263774514 0.244195562216394 0.257533372346735 0.245737757433322 0.244422163690426 3 3|0 -|/ 18625320 18626219 18625823.667 18625154 18627418 - gene protein_coding_gene FALSE TRUE AT3G50210.1|AT3G50210.2|AT3G50210.3 2-oxoacid-dependent oxidase, putative|oxidoreductase similar to DIN11 (DARK INDUCIBLE 11), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49620.1); similar to putative flavonol synthase-like protein [Euphorbia esula] (GB:AAF34802.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to DIN11 (DARK INDUCIBLE 11), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49620.1); similar to 2-oxoacid-dependent oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G49630.1); similar to putative flavonol synthase-like protein [Euphorbia esula] (GB:AAF34802.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 1.82805724432369 16.3958790901984 1.13447526550929e-07 0.000826011440817312 12.0635473403627 11.2234497449011 1.82805724432369 0.128411475001695
AT1G75680_at 8.81116957617568 8.92225821085032 6.0487990293504 6.35680156784466 7.74436751155428 7.5959891628669 10.2432613953110 10.2221511983512 10.1847348159714 10.3436304540741 10.7583941917259 10.7618662463329 10.1595911254885 10.1435356757231 10.4072049113262 9.94635794729982 9.39842141245554 10.4858505134335 10.2909598298343 0.167720641578993 0.165533245119049 0.213309115008155 0.206880099708875 0.188715381864749 0.187890003875993 0.164173897928213 0.162334778936696 0.168470345008629 0.165017318431584 0.165653201865728 0.163909585155474 0.167750798981376 0.162671327654088 0.163268520417535 0.162334778936696 0.168871470754863 0.162334778936696 0.162334778936696 1 1 - 28420890 28421544 28421132.545 28420713 28423190 - gene protein_coding_gene FALSE TRUE AT1G75680.1 glycosyl hydrolase family 9 protein Identical to Endoglucanase 10 precursor (EC 3.2.1.4) (Endo-1,4-beta glucanase 10) [Arabidopsis Thaliana] (GB:Q8LCP6;GB:Q9LR07); similar to glycosyl hydrolase family 9 protein [Arabidopsis thaliana] (TAIR:AT1G19940.1); similar to Os06g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058583.1); similar to Glycoside transferase, six-hairpin, subgroup [Medicago truncatula] (GB:ABE81087.1); similar to Os09g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063771.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside transferase, six-hairpin, subgroup; (InterPro:IPR012343); contains InterPro domain Glycoside hydrolase, family 9; (InterPro:IPR001701) -1.31433819546070 -16.3938887344458 1.13560092593331e-07 0.000826717474079453 12.0631997347402 18.5084802663379 -1.31433819546070 0.0623160264663306
AT4G37400_at 5.43040202470748 5.35051190455043 7.83220613058658 7.93096404097372 7.15436844280062 6.99962192469968 6.24638286423109 6.32576948273398 4.06085436758038 4.297572627649 4.14891924206301 4.84649514906163 5.11821911112187 4.84647906581351 3.61084163552305 6.70124895077267 6.00950671172378 3.79353091182809 4.09926121150259 0.210054565323284 0.212666375077662 0.206687594024411 0.21131224798074 0.208321105988783 0.206687594024411 0.211305255376542 0.210735673175753 0.222239367431866 0.215877137950744 0.208340263011251 0.213319011467424 0.207380424919726 0.219735905278742 0.236043460304117 0.208375191199916 0.211481698126206 0.224344588551421 0.214340496709075 4 4 + 17585598 17586159 17585903.636 17584045 17586354 + gene protein_coding_gene FALSE TRUE AT4G37400.1 CYP81F3 (cytochrome P450, family 81, subfamily F, polypeptide 3); oxygen binding member of CYP81F similar to CYP91A2 (CYTOCHROME P450 MONOOXYGENASE 91A2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37430.1); similar to CYP81F2 (cytochrome P450, family 81, subfamily F, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G57220.1); similar to CYP81F4 (cytochrome P450, family 81, subfamily F, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37410.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.18643296368527 16.3902390998109 1.13766824279084e-07 0.00082810871392745 12.0625620955206 11.1772622683183 1.18643296368527 0.0372707987439605
AT3G05640_at 9.06086212848396 9.01640446950466 9.35127826028833 9.29935973833567 10.1856651610532 9.9991842298231 9.14718809227036 9.03020900605114 7.46870673089248 8.310934698892 10.3663757725957 9.66790651982664 9.80544412268627 9.61860145920301 9.66010433473952 8.73150328510962 9.39196170976899 9.77923408928202 7.88914404860524 0.130387959603606 0.130511026342281 0.133121643630248 0.133936601563781 0.131251645757539 0.130387959603606 0.131315280986304 0.134287995593129 0.154923365742871 0.150193237404020 0.134038373989936 0.130387959603606 0.132154442946631 0.144323806653704 0.140019056819585 0.130387959603606 0.144225062216374 0.134569014083346 0.149391661480825 3 3 - 1640658 1641439 1641052.182 1640399 1643259 - gene protein_coding_gene FALSE TRUE AT3G05640.1|AT3G05640.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT5G27930.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85677.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 1.19162608774289 16.3128729811391 1.18249513130059e-07 0.000860619956560571 12.0489690668374 18.1448871712837 1.19162608774289 0.0398894794087752
AT4G31800_at 9.05932778166754 8.84726426558356 10.8400075804316 10.9024875294135 6.96299692800195 6.77763510218683 2.67176759025334 3.03129480295966 3.10347146742791 3.72174336616508 3.31889540032935 2.94916745210521 2.78756126828315 3.40781967797328 3.24260039983047 3.726562205392 3.48698490287469 2.97557751461857 3.26482485827355 0.226684565187102 0.224921149341672 0.226247396340067 0.226914971775965 0.240503553577795 0.235054700517045 0.221507045024661 0.220636290674252 0.232543200524894 0.223558667225268 0.220636290674252 0.225323419491127 0.227190495003087 0.222659811079792 0.220636290674252 0.220636290674252 0.231151252899864 0.226885707615297 0.220636290674252 4 4 + 15384056 15384771 15384406.909 15383207 15385035 + gene protein_coding_gene FALSE TRUE AT4G31800.1|AT4G31800.2 WRKY18 (WRKY DNA-binding protein 18); transcription factor Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. Identical to WRKY transcription factor 18 (WRKY DNA-binding protein 18) (AtWRKY18) (WRKY18) [Arabidopsis Thaliana] (GB:Q9C5T4;GB:O81768;GB:Q944H8); similar to WRKY60 (WRKY DNA-binding protein 60), transcription factor [Arabidopsis thaliana] (TAIR:AT2G25000.1); similar to WRKY1 [Brassica rapa subsp. chinensis] (GB:AAS13378.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.42095885680639 16.2899875049746 1.19613040296191e-07 0.000870424094235383 12.0449201064315 10.6867190308779 1.42095885680639 0.0797730386210764
AT2G44080_at 7.07901968584322 7.66871012624583 7.01426139321004 7.03112418723302 7.7948555565047 7.04907795874664 2.9661148857568 3.19733145118262 5.61636770190773 4.80465181797659 7.51866660671552 7.92015785080076 8.07016918151314 7.54357836918665 6.87873438034516 8.54751253064686 7.72074528121278 7.24962048514446 5.5236395019844 0.266383509556806 0.259701007441459 0.267573027416795 0.260341209671119 0.259701007441459 0.278143777818713 0.278061812496205 0.289890597793237 0.278867468768175 0.286811358483167 0.261402549591619 0.259701007441459 0.263065376177976 0.269668913803507 0.261927701454058 0.262479928666914 0.26498006100652 0.268852672158719 0.268794244125297 2 2 + 18244906 18245165 18245049 18244228 18245249 + gene protein_coding_gene FALSE TRUE AT2G44080.1 ARL (ARGOS-LIKE) Encodes ARL, a gene similar to ARGOS involved in cell expansion-dependent organ growth. Upregulated by brassinosteroid. Acts downstream of BRI1. similar to (ARGOS), unknown protein [Arabidopsis thaliana] (TAIR:AT3G59900.1); similar to Os11g0247000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067611.1); similar to Os04g0444300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052892.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84385.1) 2.18039874086962 16.1459387527374 1.28609055404770e-07 0.000935759487125105 12.0191365438205 12.7230791187496 2.18039874086962 0.169351871805377
AT2G04570_at 8.30408873786009 8.64707208236597 8.82760792460108 8.81943052360376 10.5833365410450 10.3513435750696 8.75408219691341 8.82109318890416 8.56617828569733 7.78762062265525 10.2663710736988 9.95439655103463 9.82979068180824 9.94757245178054 9.78279573825982 8.72521456661403 8.7997178154657 9.74488473025922 7.45631068647894 0.125111518339134 0.123002884109732 0.128712116743923 0.121337709892091 0.120548889039239 0.116590445331768 0.117223436560957 0.120141135511551 0.119020307343753 0.126253764294907 0.117560258664356 0.115807833395474 0.113892889095690 0.119324982041270 0.115192197746536 0.117315952324329 0.126670793746721 0.113377218370345 0.140738308313022 2 2 + 1595433 1596074 1595679.273 1594670 1596346 + gene protein_coding_gene FALSE TRUE AT2G04570.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G42990.1); similar to GDSL-motif lipase/hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22300.1); similar to Os06g0636700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058145.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 1.35424267120345 16.0847768513272 1.32654962153858e-07 0.000965064849669314 12.0080314191324 17.9225299209915 1.35424267120345 0.0726037335967391
AT1G27120_at 4.50113845837557 4.60061465003958 2.76712491004158 3.09214507808825 3.42962635818517 3.52568325448819 7.18550968677409 7.57032115844624 6.31265444701741 7.17427352388057 7.43561913182388 7.9108825698182 6.63048722049306 7.20533722188153 6.86535227991201 6.19722913014305 5.03133254708631 6.08896443765745 7.07463746726931 0.241633926375508 0.243293590457706 0.248357471001774 0.242386156216003 0.243079680314243 0.244829856878135 0.249227600308503 0.23988238921139 0.247811979523688 0.240359442849694 0.242497376010035 0.240196789042869 0.23988238921139 0.242786786149512 0.240651360171254 0.23988238921139 0.24923883188682 0.243576724910351 0.23988238921139 1 1 + 9423096 9423870 9423584.091 9421164 9424056 + gene protein_coding_gene FALSE TRUE AT1G27120.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74800.1); similar to galactosyltransferase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83183.1); similar to galactosyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99414.1); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -1.47197783345595 -15.9944950395896 1.38889213470807e-07 0.00101028013878665 11.9914643286066 11.3462733010087 -1.47197783345595 0.0903935955343577
AT4G19710_at 7.06640915669294 7.17224283458265 5.20869018259489 5.55049113108519 6.29712961810481 5.88004057842209 8.76061117313047 8.52498967664003 7.17861596621193 8.13517971361646 6.36602634303071 6.97852235796784 6.55978805943278 6.50282186309273 6.70832280035267 6.75185490610015 6.69087451530702 6.85003447763994 7.69036356609887 0.223555015753446 0.217991965943959 0.23589229874886 0.226672175057809 0.220958675948926 0.226552184566308 0.226505534088900 0.220460485408874 0.231943528061739 0.223959798259284 0.217991965943959 0.220591387503326 0.225394725198202 0.222673768562195 0.224002415799824 0.220434809806228 0.223224825671342 0.240325369458639 0.220849608247886 4 4|0 +|/ 10728797 10729522 10729242.4 10724865 10729778 + gene protein_coding_gene FALSE TRUE AT4G19710.1|AT4G19710.2 AK-HSDH/AK-HSDH II; aspartate kinase/ homoserine dehydrogenase|AK-HSDH/AK-HSDH II Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. Identical to Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplast precursor (AK-HD 2) (AK-HSDH 2) (Beta-aspartyl phosphate homoserine 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (AKHSDH2) [Arabidopsis Thaliana] (GB:O81852;GB:Q3E9Y8); similar to AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I), aspartate kinase/ homoserine dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G31230.1); similar to Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I [Medicago truncatula] (GB:ABE90460.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05981.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05983.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Bifunctional aspartokinase/homoserine dehydrogenase I; (InterPro:IPR011147); contains InterPro domain Homoserine dehydrogenase, NAD-binding; (InterPro:IPR005106); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -1.56949887466003 -15.9546605889844 1.41743285662148e-07 0.00103089891662081 11.9840875814739 13.9796174175773 -1.56949887466003 0.103473001744395
AT1G54040_at 7.80576187850685 7.98351242379657 4.17276306861514 4.59571286076521 3.52185382602728 4.14885042976965 9.63517493615394 9.6689781739191 8.44600907476172 8.93857697890505 9.63404074451765 9.70314634911075 9.6288030123582 9.3131638792493 9.8112265625119 9.95031101801145 8.93760462012203 9.57912438733096 8.3328098804841 0.170299720685180 0.170817996457469 0.186797722795236 0.196264984046815 0.185692623946433 0.18892968534562 0.170299720685180 0.172681864213592 0.185639016219935 0.175183016290602 0.170299720685180 0.171683407381298 0.171683264839845 0.17615655422825 0.172865838678139 0.171250589821062 0.179556936980501 0.182193375454552 0.176640403794088 1 1 - 20174675 20175221 20174915.545 20174383 20177617 - gene protein_coding_gene FALSE TRUE AT1G54040.1|AT1G54040.2 ESP (EPITHIOSPECIFIER PROTEIN) epithiospecifier protein similar to ATMLP-470 (MYROSINASE-BINDING PROTEIN-LIKE PROTEIN-470) [Arabidopsis thaliana] (TAIR:AT3G16400.2); similar to epithiospecifier protein [Brassica oleracea var. italica] (GB:AAY53488.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -1.83317477326594 -15.9537350509152 1.41810372138413e-07 0.00103124502619054 11.9839156945331 15.5126473912118 -1.83317477326594 0.134577034211902
AT4G36360_at 6.52604285607248 7.01374575166459 2.86225719066045 2.78097691314992 2.84188388420248 3.65819439313253 8.57775624171438 8.74442659892409 6.99318276491164 8.2944418949946 8.47049479126979 9.47177632037072 7.64337935403112 8.17959490116177 8.95908114881193 8.27445572208312 6.87729770226364 8.11716242523992 8.19621478531124 0.216763540529865 0.197405972003787 0.224970544322902 0.218736370918228 0.215413022498933 0.22055502053896 0.198913348432707 0.197407799106165 0.208797179708950 0.20221110250332 0.200841892885635 0.204769369031638 0.201318601089754 0.200762916055718 0.197405972003787 0.197405972003787 0.206422303790415 0.201747527303596 0.197405972003787 4 4 - 17176865 17177483 17177175.727 17176345 17181264 - gene protein_coding_gene FALSE TRUE AT4G36360.1|AT4G36360.2 BGAL3 (beta-galactosidase 3); beta-galactosidase putative beta-galactosidase (BGAL3 gene) similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT1G45130.1); similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Prunus persica] (GB:AAW47739.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91082.1); similar to putative beta-galactosidase [Lycopersicon esculentum] (GB:AAF70825.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -2.12922797644635 -15.8858726247238 1.46827181903057e-07 0.00106758043961713 11.9712514264909 13.4142113673867 -2.12922797644635 0.167657949530812
AT1G69870_at 9.13477912352366 9.04222870069348 9.43720032193962 9.62944522082636 9.70307813738948 9.45678869375511 7.95690543938832 7.82024640222513 5.94747311653126 5.85682986990099 6.42778554695907 6.63063016028537 7.38108446251027 7.37178071342246 6.32175492809579 8.04845497199953 8.08531050225498 6.65115616712026 5.20837679332032 0.257732525993328 0.257893567811805 0.26162760636226 0.263598902088672 0.257953390175516 0.265222535766444 0.254129055301359 0.254129055301359 0.277059685177857 0.267814048250728 0.269363158887958 0.259275102568512 0.260736113296819 0.254129055301359 0.270676301725648 0.254129055301359 0.254683424957429 0.263489262284351 0.285287430311100 1 1 + 26323165 26323547 26323340.818 26319690 26323883 + gene protein_coding_gene FALSE TRUE AT1G69870.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G27080.1); similar to Os03g0687000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050937.1); similar to nitrate transporter NRT1-5 [Glycine max] (GB:BAB19760.1); similar to Os01g0913300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045170.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 1.25596979934172 15.7501308545142 1.57467269542269e-07 0.0011447870495723 11.9455533436213 15.4154029757169 1.25596979934172 0.0611492675195115
AT1G66940_at 7.25764043667215 7.56198510853376 2.02930106889509 1.89893748782764 3.67485952273414 3.00406527580250 4.03718258731735 3.14226812848841 8.6980870600302 5.95635527269681 6.04219611015729 7.63132346561528 4.73556825989944 5.99530375301023 7.06062700753274 5.75156167348567 1.8041503740766 4.78733913220131 7.85341163192038 0.288113351227659 0.280692377887076 0.282210079308753 0.285763592919509 0.272838410632852 0.275955692854943 0.285816337268081 0.285843696367696 0.286919478157051 0.277384842440219 0.274480186793369 0.274191129011476 0.275962264030201 0.282076769690356 0.272838410632852 0.275031438405655 0.287140932792129 0.276085844306872 0.272838410632852 1 1|0 -|/ 24976906 24977914 24977459.222 24976691 24978454 - gene protein_coding_gene FALSE TRUE AT1G66940.1|AT1G66940.2|AT1G66940.3 protein kinase-related similar to kinase [Arabidopsis thaliana] (TAIR:AT1G67000.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78903.1) -2.43729374632827 -15.7387766721375 1.58395531374473e-07 0.00115137711756104 11.9433813955451 10.5650933071404 -2.43729374632827 0.201848600301138
AT4G38370_at 4.48995488131595 4.72358719959007 5.76800997989229 5.60946084247341 6.41694686645958 6.30801471162524 5.77225555021692 5.87697516122143 3.8410438110018 4.69023512737151 5.83094202404199 5.83388434115018 5.75318803908219 5.97766327980518 6.10438917068413 5.8483752241585 6.41143900980186 5.80683469876049 4.40556671113027 0.232168159410027 0.225167365064938 0.222418844708211 0.223519346582796 0.228772833695506 0.234671756666913 0.225490718618287 0.222883855733547 0.250255346413528 0.229268643623230 0.228024678774316 0.221338025377006 0.226438368058997 0.22330748803894 0.222970887790816 0.223454109865586 0.237256346396937 0.220119961578762 0.229724088022634 4 0|4 /|- 17970131 17970994 17970539.111 17969901 17971289 - gene protein_coding_gene FALSE TRUE AT4G38370.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to H0515C11.13 [Oryza sativa (indica cultivar-group)] (GB:CAH66037.1); similar to Os04g0224600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052277.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 1.22173624614712 15.7190354902664 1.60024040648553e-07 0.00116305472743368 11.9395967724917 10.7497113274011 1.22173624614712 0.0554191992211471
AT2G05630_at 8.12525802477855 8.33223437259656 8.86133875051893 8.80133171568732 9.18464359031306 8.72594344343324 5.77418530493137 6.13235256312731 5.39193966241635 5.05535441959066 6.64172765999813 6.33686552217015 6.2568065630619 6.47346241526511 6.29743859919286 6.38651440458453 6.70854015812075 5.65932965319378 4.54572996921208 0.224983174403841 0.223149129671551 0.228836383841761 0.231162871790361 0.235714302592901 0.237254798964325 0.220979691385297 0.22295729804058 0.226108479758484 0.233737216678471 0.229500992723146 0.221524132880180 0.229530208083897 0.230322581586767 0.231723763865229 0.219564324762378 0.230596611760604 0.229614177689480 0.224764135827654 2 2|0 -|/ 2083209 2084748 2083580.667 2082983 2084879 - gene protein_coding_gene FALSE TRUE AT2G05630.1 ATG8D (autophagy gene 8-related); microtubule binding in the Arabidopsis autophagy pathway similar to ATG8C (AUTOPHAGY 8C), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G62040.1); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar to Os08g0191600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061171.1); similar to Os04g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 1.57485887341920 15.6929290769002 1.62206389250142e-07 0.00117875383068078 11.9345755787733 13.6635411235173 1.57485887341920 0.107395675121086
AT4G04840_at 5.1789285272795 5.87031154538172 2.63765652694329 2.11362249900054 1.85197999293475 1.91986259414437 6.71487037816612 6.63213257320846 8.17135527671464 7.05548788161633 8.18281665010738 8.67118486903441 8.34689952010457 7.9834781957737 8.61554036023425 8.7807880683328 5.7729082073731 8.13766469987734 8.7564652654091 0.263244217739873 0.262283903642546 0.285079517444178 0.28236191220808 0.274329689837188 0.289762018103964 0.266499396471253 0.257869976890878 0.26154017860911 0.257648345667015 0.258410982749241 0.257648345667015 0.257648345667015 0.257648345667015 0.2680605419148 0.257648345667015 0.276106628045382 0.257991160704539 0.260961338412082 4 4|0 +|/ 2449772 2451249 2450315.5 2449558 2451587 + gene protein_coding_gene FALSE TRUE AT4G04840.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21850.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) -1.9506532113226 -15.6803403343473 1.63270584951805e-07 0.00118632407025981 11.9321476670152 12.1428436859330 -1.9506532113226 0.151269548658350
AT3G29030_at 6.94876489902205 6.73016670553401 3.66084663657951 2.86501838461348 3.90904681955227 4.05720468488855 8.31912864069192 8.24940537582557 8.04488971809467 8.26160143206976 9.47806831326273 9.7257704735738 8.256475264556 8.50427857322108 9.54655771271528 8.21097220569103 6.51167748541991 7.8700268930915 8.80735303011423 0.209100652770142 0.206224475356065 0.220814137276819 0.218149046524584 0.219076355210955 0.233664447863160 0.202248339578325 0.204505946965107 0.211815651749207 0.202248339578325 0.208441810744682 0.215190730865079 0.202248339578325 0.206807396720290 0.213908332660441 0.202248339578325 0.213407331271841 0.207986060561448 0.203169903595616 3 3 - 11012783 11013761 11013335.455 11012545 11014595 - gene protein_coding_gene FALSE TRUE AT3G29030.1 ATEXPA5 (ARABIDOPSIS THALIANA EXPANSIN A5) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A5 precursor (AtEXPA5) (Alpha-expansin-5) (At-EXP5) (AtEx5) (Ath-ExpAlpha-1.4) (EXPA5) [Arabidopsis Thaliana] (GB:Q38864); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin [Cicer arietinum] (GB:CAC19183.2); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.89857015104737 -15.6724541887036 1.63941210637143e-07 0.00119103289527884 11.9306245059932 14.0345776476472 -1.89857015104737 0.145606744481675
AT4G23300_at 8.0832664090452 8.07080150394336 6.54892353816062 6.19976444728201 7.5829348787301 7.16139937852885 8.5633475326193 8.3543155639818 8.49419342101824 8.38176398808912 7.1174929850989 6.80583694173633 6.66981516103393 7.05495440966677 6.67343831352454 6.624051971338 6.44307716729825 6.60932203244046 8.32522348052241 0.207807732068734 0.209280510175567 0.217107064124138 0.208729154265243 0.201371349411545 0.224919032124754 0.201371349411545 0.204494588732627 0.210816701041652 0.201371349411545 0.206741649181848 0.203249875080869 0.207924440062104 0.204879619885383 0.201371349411545 0.201371349411545 0.209973615748628 0.219306101740454 0.202782871325953 4 4|0 +|/ 12183772 12184498 12184232.9 12181942 12184714 + gene protein_coding_gene FALSE TRUE AT4G23300.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23210.3); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11530.1); similar to CRK11 (CYSTEINE-RICH RLK11), kinase [Arabidopsis thaliana] (TAIR:AT4G23190.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.52266109941573 -15.6413863353382 1.66613230249997e-07 0.00121027850453598 11.9246073279202 15.1456652828583 -1.52266109941573 0.101418594768820
AT1G72040_at 6.54509811160059 6.6349136580353 5.28178220549411 5.58414066838522 5.51040362119331 5.52673617755829 7.38866776163462 7.45147633253917 5.65314458890711 5.88135403303841 4.63910657078597 5.0044573406938 5.17798398389592 4.36267491466335 5.34410136881713 5.35693507271921 5.79902613762289 4.69775908306092 6.32328492871637 0.252333175156924 0.251357169682792 0.246183488564451 0.248116166099487 0.246183488564451 0.258555562852931 0.250875782473123 0.255899304705095 0.250970404910896 0.246814400990321 0.255315766716756 0.248607439281316 0.246183488564451 0.246590639917349 0.254828382451656 0.246183488564451 0.255494527192908 0.250447352807139 0.247778387601848 1 1|0 -|/ 27115861 27116552 27116214 27115556 27118004 - gene protein_coding_gene FALSE TRUE AT1G72040.1 deoxynucleoside kinase family similar to unnamed protein product [Homo sapiens] (GB:BAD18437.1); contains InterPro domain Deoxynucleoside kinase; (InterPro:IPR002624) -1.21705612782479 -15.6377011949603 1.66933383997892e-07 0.00121243716797669 11.9238918328541 11.7405773550149 -1.21705612782479 0.0557276703823336
AT1G15290_at 8.30783052843348 8.34897497140618 6.80009447783294 6.85787844046567 7.6330766816837 8.07668681400028 9.31331223826505 9.41040081386713 9.7644844622953 9.5870919219483 8.34557082808476 9.05916468394208 8.22450324332944 8.13037501799406 8.63997670089034 8.47575324948232 8.04666170767133 8.48206249688174 9.58816464848769 0.167493469737188 0.162470398675997 0.187517543479131 0.185150444662031 0.176204846508877 0.166354093797753 0.169800225426378 0.164398466361715 0.170899601709074 0.164291355165196 0.164790255428338 0.163943162326372 0.167074583582267 0.168930428667619 0.164770178803394 0.164959026411839 0.168085997131749 0.168533663831071 0.16329042199764 1 1 - 5257326 5257894 5257650.091 5257041 5264809 - gene protein_coding_gene FALSE TRUE AT1G15290.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G28080.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G01320.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to H0811D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86110.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.36213369385328 -15.6338711093438 1.67266857519429e-07 0.00121469191930610 11.9231477987138 17.1295762883834 -1.36213369385328 0.0795389041685413
AT1G64380_at 9.29725825949214 9.6816330467654 10.4096179306449 10.4184260855928 10.9698775973841 10.8761689798246 9.7471314289411 9.7238423698463 8.39616192625105 9.27337593067626 10.9518084273564 10.6198809220013 10.5051575289987 10.3618979736192 10.1680060722541 10.4468093979020 10.4632355184646 10.0343186355538 9.0996783353466 0.105673651673695 0.0961418307850803 0.0945612224574667 0.093953667160716 0.0995172531616202 0.0970477357093881 0.097380851544585 0.103719934097488 0.111823226985433 0.110097074660811 0.0981262240655094 0.0954630354980164 0.0975728753697506 0.101858284053657 0.100490219130805 0.093953667160716 0.102639139159989 0.101348485031186 0.112058052950919 1 1 - 23894667 23895086 23894916.455 23894309 23895836 - gene protein_coding_gene FALSE TRUE AT1G64380.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to RAP2.4 (related to AP2 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G78080.1); similar to Os05g0572000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056377.1); similar to apetala2 domain-containing protein [Atriplex hortensis] (GB:AAF76898.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.28843680876391 15.6022289540583 1.70050442910912e-07 0.00123473626597613 11.9169854642256 19.8239751491164 1.28843680876391 0.0686015504975975
AT3G08760_at 7.32603836392174 7.02629476077175 8.09248409343268 8.20618225699975 7.7843063063772 7.79657551724967 6.15707110537889 6.34769149370084 5.89437138532445 5.40092862945014 7.2558395439364 6.94284839200419 7.43089064064501 7.41098416545253 6.74754232038694 7.09579811303144 7.02065241366742 6.04903372994888 5.87376957888326 0.173022667864224 0.173844029405926 0.178641032684667 0.178091729298056 0.180202824976253 0.179472952680360 0.169362364195270 0.177246878864637 0.182061965485842 0.172752962980218 0.170440801266169 0.177701995872106 0.175119150293753 0.178651829966405 0.172276912352716 0.171747150480274 0.177222057603154 0.193077216739873 0.177107062169901 3 3 - 2658158 2658583 2658384.545 2657924 2660895 - gene protein_coding_gene FALSE TRUE AT3G08760.1 ATSIK; kinase Encodes an osmotic stress-inducible kinase that functions as a negative regulator of osmotic stress signaling in plants. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G15080.1); similar to Os01g0822200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044652.1); similar to putative protein kinase AtSIK [Oryza sativa (japonica cultivar-group)] (GB:BAD73441.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 1.26339428978484 15.5933892511161 1.70837284367330e-07 0.00124027868450682 11.9152589657306 13.7006914186141 1.26339428978484 0.0645798098988594
AT1G76590_at 8.75894790727421 8.81815973715775 8.98270320006921 9.13703321956579 10.0920850305898 9.4705834752177 5.84162866763262 5.94086481387917 4.58856272929287 5.55107712978711 5.47253351549588 5.55869089103902 6.72737102350199 6.03839367522099 5.5533598955784 6.47846281352666 7.26066829568003 6.49574941005948 5.06915581972597 0.294547504842439 0.298007742003905 0.308353343784509 0.301404226088932 0.296462805155347 0.305074804738873 0.291588752337539 0.290308510582106 0.314794883975674 0.286929722914325 0.291616152998176 0.286929722914325 0.287311614785133 0.286929722914325 0.301993471343232 0.286929722914325 0.297884581078522 0.286929722914325 0.293221124827131 1 1|0 +|/ 28746031 28746717 28746382.1 28745585 28747101 + gene protein_coding_gene FALSE TRUE AT1G76590.1 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G21000.1); similar to Os06g0624900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058108.1); similar to putative zinc-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35686.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 1.60462804014276 15.5727559177032 1.72689753153539e-07 0.00125355491814154 11.9112205734246 14.0141268812307 1.60462804014276 0.112610034213411
AT2G26440_at 10.3759637115066 10.6015037340936 10.5054099154004 10.6169962103947 9.23521663905188 9.16838649703796 4.24599152753509 4.40743675456161 7.91116333712835 4.77190698011121 6.3269403020297 6.43389165737315 4.80057722957695 6.96216381737444 4.6871405799358 5.09150131045886 5.34449416914832 7.15510719674746 5.15022626969329 0.225620148656231 0.226737853547101 0.226734094996967 0.225916573466178 0.226166490092479 0.226993550944623 0.227609453794879 0.226978664471391 0.229609340878003 0.232289747547679 0.227031065955020 0.225620148656231 0.236602847570948 0.234028330932299 0.225620148656231 0.225620148656231 0.235802929402467 0.235495764458927 0.228323051418762 2 2 + 11255898 11256451 11256122 11254461 11256571 + gene protein_coding_gene FALSE TRUE AT2G26440.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT1G02810.1); similar to papillar cell-specific pectin methylesterase-like protein [Brassica napus] (GB:AAK84428.1); similar to Os06g0193200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057041.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 1.18978661036666 15.4677127438355 1.82474785161898e-07 0.00132440199070506 11.8904762628709 14.5419427379352 1.18978661036666 0.0530153837404552
AT1G78180_at 5.14040530220439 4.99012041016207 3.84600549673503 3.80898103194792 4.20969261424239 4.20485327526819 6.23241815937531 5.97512817294228 6.0416775674614 6.38982917314596 5.39140043999323 5.97528020158905 5.60331172364358 5.55623157011741 5.93113003825712 5.5985702767762 4.34638396553416 5.54588898946976 6.43751004649951 0.266054132943493 0.252123405637866 0.274150340941746 0.281418587630415 0.252673218465977 0.271821793570329 0.251491124153907 0.261528351842278 0.258882658111694 0.251722823804819 0.252057204935837 0.253602775558789 0.257923915849963 0.260565064552083 0.251491124153907 0.255668782179995 0.275998520167244 0.256412113591189 0.255802577172781 1 1|0 +|/ 29422602 29423231 29422991.8 29421806 29423533 + gene protein_coding_gene FALSE TRUE AT1G78180.1 binding similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G64970.1); similar to 80C09_21 [Brassica rapa subsp. pekinensis] (GB:AAZ41832.1); similar to Os03g0191100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049231.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -1.18164125915951 -15.4302733040202 1.86110610504785e-07 0.00135060470043322 11.8830070784351 10.6925490143805 -1.18164125915951 0.0519676891560299
AT1G04220_at 2.38116670403548 2.5743160782185 5.15508314527035 4.60711961832706 6.34811396821481 6.0088791269717 5.00415094321009 5.46335325982691 7.17097968677942 6.23888016647314 9.20740952252477 9.02530770159026 8.49288076513923 8.66105722221752 8.70215030834507 8.29315571056573 7.198679607328 8.36155560581522 6.18304759695165 0.258205760351842 0.243563068997290 0.227654571885073 0.227645945597443 0.233767990542360 0.237928758916567 0.234858408027746 0.227479494732435 0.238747275030093 0.233647176307779 0.227490408532981 0.223355205287553 0.223180577412419 0.236717819261523 0.225978771798668 0.223323814955466 0.232380752119431 0.229147126454616 0.24121187631725 1 1 - 1119852 1120421 1120129.909 1119698 1122525 - gene protein_coding_gene FALSE TRUE AT1G04220.1 beta-ketoacyl-CoA synthase, putative Identical to 3-ketoacyl-CoA synthase 17 (EC 2.3.1.-) (KCS-17) (Very-long-chain fatty acid condensing enzyme 17) (VLCFA condensing enzyme 17) (KCS17) [Arabidopsis Thaliana] (GB:Q5XEP9;GB:O64485;GB:Q56WE1;GB:Q8VXW2); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT5G43760.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to fatty acid elongase 1-like protein [Limnanthes douglasii] (GB:AAG28600.1); similar to putative fatty acid elongase [Zea mays] (GB:CAC01441.1); similar to beta-ketoacyl-CoA synthase (GB:AAC49186.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 1.81792881187294 15.3415902371851 1.95049551515759e-07 0.00141527954579835 11.8651542810084 12.2046447082638 1.81792881187294 0.140964443619378
AT3G10840_at 6.39249791427727 6.29960054215377 4.48973669514857 4.13028057171425 5.42158166129831 5.03445845945363 8.1297436701025 8.00250125150716 6.63967268868629 7.05884489887291 6.25851144588159 7.18552910617855 6.3006084413726 6.57428633826931 6.77635326076186 6.55341668637619 6.08605924474119 5.8813660241454 7.03397290525369 0.184264263997653 0.181275365381286 0.190244168030815 0.205811654070045 0.177131391066738 0.197242449680318 0.188058893459063 0.181434058577617 0.188102903714055 0.177131391066738 0.194446450499778 0.182205904592441 0.187171523885971 0.177131391066738 0.180380624786249 0.181725456276846 0.186700331515090 0.185268419191519 0.185476694928929 3 3|0 -|/ 3391320 3392032 3391627.8 3391070 3393295 - gene protein_coding_gene FALSE TRUE AT3G10840.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G15490.1); similar to hydrolase, alpha/beta fold family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95656.1); similar to Os12g0118400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066007.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -1.44794267170580 -15.3374302501008 1.95480468574720e-07 0.00141821079950959 11.8643112490650 12.6689733370753 -1.44794267170580 0.0953990628579198
AT1G19020_at 8.42327691651183 8.6341232568491 9.11491376434757 9.36474618557114 8.32348260338929 8.2952005323892 4.05464926509116 4.70161260819855 7.44434927911816 6.18181842648322 7.63456005239013 8.4800297147403 6.43142875148464 8.01239283777402 7.33927181202403 7.00628445715989 6.65547940211042 7.36124298792728 5.34362527539415 0.204077669008178 0.206264480365554 0.207370233300462 0.205041422149485 0.215996649555535 0.213625095710877 0.232460599237483 0.232155279484361 0.209242826066802 0.213195034657755 0.203531140497726 0.205383789167736 0.207529987725847 0.212996630332456 0.225600809386771 0.212387315115753 0.23519929239246 0.204639475169286 0.246672570398947 1 1 + 6568135 6568368 6568238 6568064 6568588 + gene protein_coding_gene FALSE TRUE AT1G19020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48180.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82379.1) 1.68149609235723 15.2967514787708 1.99750640744983e-07 0.00144899114796410 11.8560410107925 14.4581759310184 1.68149609235723 0.125537276576326
AT1G15310_at 4.51152788032478 4.42060497449965 6.06038401793977 5.82463091637743 5.55917323619044 5.58288643596911 4.54151667504 4.51273978905772 4.42935126220812 4.24729336724256 5.41194632150505 5.01087845580557 5.39807601544542 5.36690525314836 5.10183001109273 5.49326282881624 6.14236955354662 5.47658651688828 4.5709444274685 0.217037824473143 0.217037824473143 0.221753694070562 0.232231714947815 0.224652590015327 0.231804956641011 0.22201531588069 0.222540511102355 0.226249945798504 0.226263349024006 0.229425486444246 0.228684108321854 0.217037824473143 0.226841063543106 0.224225537760827 0.217037824473143 0.219923502922272 0.219745761045176 0.221594785057101 1 1|0 -|/ 5269192 5269839 5269415.125 5269014 5272053 - gene protein_coding_gene FALSE TRUE AT1G15310.1 ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A); 7S RNA binding / GTP binding / mRNA binding 54 kDa protein subunit of SRP that interacts with the signal peptide of secreted proteins Identical to Signal recognition particle 54 kDa protein 1 (SRP54) (SRP-54A) [Arabidopsis Thaliana] (GB:P37106); similar to signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) [Arabidopsis thaliana] (TAIR:AT1G48900.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49966); similar to signal recognition particle 54 kDa subunit (GB:AAA66200.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain Signal peptide binding (SRP54) M-domain; (InterPro:IPR004125); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle protein SRP54; (InterPro:IPR006325) 1.13477008622331 15.2891583084569 2.00559185480163e-07 0.00145465577228762 11.8544919153708 10.0472304349269 1.13477008622331 0.0442007916763998
AT3G57680_at 5.6221557300713 6.15535167957222 7.76680042929619 7.35363364568051 7.80134894660132 7.49629303524749 6.84653838315857 6.57398951085558 4.02396841647892 4.65784604138518 6.231373620343 6.14159815093485 7.11655846133319 7.89813921294535 4.93950021169586 7.44977148897298 7.73794389402738 6.00587714848201 4.67859218912692 0.223292074855824 0.220526364569127 0.222679237009792 0.227072294273421 0.222413009769420 0.215229528822333 0.218312690184555 0.218111043775742 0.240702312803264 0.229307393608474 0.221451887185745 0.217122071459134 0.218907872680352 0.22527677455482 0.235849125989899 0.218897270785084 0.219926631648599 0.238212455597795 0.226938429342814 3 3|0 +|/ 21393858 21394564 21394257 21392031 21394606 + gene protein_coding_gene FALSE TRUE AT3G57680.1 peptidase S41 family protein similar to C-terminal processing protease, putative [Arabidopsis thaliana] (TAIR:AT4G17740.2); similar to carboxyl-terminal processing protease [Nostoc sp. PCC 7120] (GB:NP_487460.1); similar to Os06g0318600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057504.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S41; (InterPro:IPR005151); contains InterPro domain Peptidase S41A, C-terminal protease; (InterPro:IPR004447) 1.77081828977672 15.2666425048833 2.02978277469074e-07 0.00147199846820573 11.8498884764147 12.5237959980215 1.77081828977672 0.136521014366743
AT2G40960_at 6.32468530684789 6.06799315176777 5.05287864166291 4.31972413587409 5.19649795427509 4.46019918972248 7.1041048948815 6.52791194075624 6.90031299084891 7.8813560938119 5.11540344502619 4.52603020932022 4.15067888369898 4.48160997838276 4.36905195242684 4.95648136177751 4.87722650305966 3.57156047566952 8.08508409684936 0.239333001642806 0.2426833174151 0.239038659695917 0.249107658198997 0.245652614428772 0.243287649990053 0.261140289116886 0.249999815537008 0.262335311575328 0.243152598064765 0.253577881811425 0.239038659695917 0.242436785429965 0.240341434252089 0.243809144965829 0.239038659695917 0.250465723767442 0.247168614192708 0.251006663587518 2 2|0 +|/ 17103601 17104412 17103960.5 17102600 17104532 + gene protein_coding_gene FALSE TRUE AT2G40960.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G56680.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -2.43254727625644 -15.1882324767859 2.11660106069026e-07 0.00153474742910651 11.8337403351515 11.6958776078103 -2.43254727625644 0.210355086100644
AT2G40100_at 7.97756889678657 8.22327209274438 6.28071121389391 6.69701370939125 6.30704003026707 5.92477488010503 8.9283774849183 8.90797122040076 8.71850105352346 9.69060679415817 8.40450720006062 8.85974838154234 7.13479835546098 8.1889038922276 8.96757784565597 9.00044683744496 7.01269413445778 8.20659096132418 8.73369067463274 0.204276560755922 0.201808076070127 0.213339360507654 0.205820748809569 0.214429309269614 0.226912965957183 0.201059536649086 0.216236231980598 0.220396731435234 0.205735475341003 0.197885249170137 0.204139887447554 0.209952609557206 0.197323314321318 0.195463878570099 0.201085371928108 0.217885939857406 0.211498667154710 0.197897239835880 2 2 + 16753248 16754244 16753831.273 16752881 16754478 + gene protein_coding_gene FALSE TRUE AT2G40100.1 LHCB4.3 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II Identical to Chlorophyll a-b binding protein CP29.3, chloroplast precursor (LHCII protein 4.3) (LHCB4.3) (LHCB4.3) [Arabidopsis Thaliana] (GB:Q9S7W1;GB:Q8L9J2); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -1.51630176085725 -15.1622201355857 2.14631149388821e-07 0.00155607583306895 11.8283427919917 16.0405951702934 -1.51630176085725 0.106709060048043
AT1G74710_at 8.98510041143911 9.29576155666971 11.2063476497877 11.2756413438149 9.66116057717066 9.18120390481708 5.72488815143108 5.18076182393314 5.35747677274757 5.06455451301793 5.68930844569568 5.82724485611975 5.33250970478685 5.74287067265109 5.57463679127396 6.38699811033731 5.74864708119625 4.92323710948397 5.06028049648496 0.302853966474347 0.310148567650217 0.317086168637135 0.315742240428571 0.306811457464384 0.305206010594395 0.295849308598449 0.29939529778618 0.302121206875549 0.317231870953654 0.295849308598449 0.299492801934389 0.298148814431906 0.295849308598449 0.295849308598449 0.309959790384803 0.331129822269861 0.302431466755036 0.303375697461169 1 1|0 +|/ 28076373 28077354 28076854.625 28073956 28077809 + gene protein_coding_gene FALSE TRUE AT1G74710.1|AT1G74710.2 ICS1 (ISOCHORISMATE SYNTHASEI); isochorismate synthase Encodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870). Identical to Isochorismate synthase 1, chloroplast precursor (EC 5.4.4.2) (IcsI) (Isochorismate mutase) (Salicylic acid induction deficient 2) (Sid2) (Enhanced disease susceptibility 16) (Eds16) (ICS1) [Arabidopsis Thaliana] (GB:Q9S7H8;GB:O81522;GB:Q9ASQ4); similar to ICS2, isochorismate synthase [Arabidopsis thaliana] (TAIR:AT1G18870.1); similar to isochorismate synthase [Capsicum annuum] (GB:AAW66457.1); contains InterPro domain Isochorismate synthase; (InterPro:IPR004561); contains InterPro domain Anthranilate synthase component I and chorismate binding protein; (InterPro:IPR005801) 1.76343569269447 15.1596914118657 2.14922443278240e-07 0.00155797279132396 11.8278170023169 14.2208342726462 1.76343569269447 0.137111706038701
AT1G01720_at 8.09294353133833 8.22740237670645 8.81493483266698 9.22683504821277 9.64048536117562 9.45002379760059 7.88738324000943 7.84696796304835 5.99277665584124 6.4562277318609 6.99090929212771 7.17687329321755 7.9667213116933 7.20545024688322 7.01484201624892 8.25751953333107 8.337125991879 7.84576467587139 6.13406513314014 0.231938800709640 0.228206442014367 0.245690057539996 0.237137084680948 0.248717855355833 0.23880916254769 0.228687800484955 0.234596843713853 0.258624900035451 0.236361707994252 0.251272428328139 0.233330329521272 0.23136285410164 0.252269687252902 0.239729760023016 0.225817217651324 0.232898438856088 0.228595898219816 0.232941827589705 1 1 + 268889 269420 269210.818 268330 269819 + gene protein_coding_gene FALSE TRUE AT1G01720.1 ATAF1 (Arabidopsis NAC domain containing protein 2); transcription factor belongs to a large family of putative transcriptional activators with NAC domain. Transcript level increases in response to wounding. Identical to NAC domain-containing protein 2 (ANAC002) (ATAF1) [Arabidopsis Thaliana] (GB:Q39013;GB:Q9LQ85); similar to ANAC032 (Arabidopsis NAC domain containing protein 32), transcription factor [Arabidopsis thaliana] (TAIR:AT1G77450.1); similar to NAC-domain protein 18 [Brassica napus] (GB:AAP35054.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 1.33721988517372 15.1443993645550 2.16693418161421e-07 0.00157059389483398 11.8246332811774 15.5452506698968 1.33721988517372 0.0822055138761474
AT1G29050_at 5.92757580721587 5.9366109916182 9.26593672961754 9.18926554409732 8.74391370478854 8.4067023638059 7.96911866300396 8.13259378816684 6.60744167382379 6.82683644019474 7.11544412350675 5.86615594863676 7.7517479747389 7.51744897433986 5.21739722976563 8.01019797887909 8.70716726386871 7.45708468160332 6.56650556943238 0.251823175180365 0.234005796386754 0.246609579340003 0.243352627458189 0.252490652011320 0.254684442498026 0.239314434597909 0.246816211552531 0.247503734437601 0.233560561835115 0.234177348416607 0.240420091659858 0.230326207601714 0.239142779480847 0.255083093154516 0.236006942866591 0.233126720297573 0.232690783408062 0.23102195467356 1 1 - 10136363 10136992 10136625.182 10136216 10139194 - gene protein_coding_gene FALSE TRUE AT1G29050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34070.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 1.22419120025492 14.9937496205237 2.35037511750484e-07 0.00170331684765576 11.7928895493873 14.8825939072398 1.22419120025492 0.0662136430944607
AT3G63200_at 4.28743540484176 4.1602632810201 2.05165491982949 2.08373848313411 2.36973663829269 2.49122013785217 6.89932401363372 7.18757641861816 5.29822494489544 6.48593517800987 7.41787990673905 8.42194517386584 6.98927879308979 7.14768731262792 7.71510623357394 5.6797804935832 5.24251923556541 6.42218164132294 5.78673510498404 0.256717100338033 0.262265702252463 0.273167386309865 0.273483757011729 0.276018612517669 0.276035390045143 0.257566358910707 0.266306164230428 0.261452821259526 0.256717100338033 0.264029760307559 0.268009027592551 0.258134190742221 0.256717100338033 0.266015705992590 0.256717100338033 0.256717100338033 0.256717100338033 0.256717100338033 3 3 + 23357678 23358313 23357986.182 23356877 23358539 + gene protein_coding_gene FALSE TRUE AT3G63200.1 PLA IIIB/PLP9 (Patatin-like protein 9); nutrient reservoir similar to PLA IIB/PLP6 (Patatin-like protein 6), nutrient reservoir [Arabidopsis thaliana] (TAIR:AT2G39220.1); similar to putative lipid acyl hydrolase [Oryza sativa] (GB:AAK72885.1); similar to Os03g0254400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049586.1); contains InterPro domain Patatin; (InterPro:IPR002641) -1.18098998095921 -14.9754978735671 2.37375214499961e-07 0.00172002080426672 11.7889963991945 10.3096248745323 -1.18098998095921 0.0586983955140735
AT4G13560_at 5.42614089265613 4.76691195497969 3.30512812367626 2.77468973746989 2.41124936225732 2.22162475606822 5.67070914437991 4.78069363854807 7.66501970878934 6.06136341824503 5.0486683909063 4.37973377829028 4.11995724680594 4.00164472551774 4.76859616396164 4.15856224915484 3.84812183580348 4.8296531270861 6.60085085728745 0.279597560990283 0.276504985725385 0.281140981168263 0.284466726846150 0.289798707111695 0.293250707552358 0.273646612074895 0.276145037633970 0.293117506787161 0.286828423652521 0.274769996591603 0.276836754731622 0.275337192539888 0.273646612074895 0.273646612074895 0.278939464787727 0.277906078123639 0.281535979837778 0.286958877289006 4 4|0 -|/ 7879790 7880281 7880003.5 7879557 7880379 - gene protein_coding_gene FALSE TRUE AT4G13560.1 UNE15 (unfertilized embryo sac 15) similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT1G52690.2); similar to putative LEA III protein isoform 1 [Corylus avellana] (GB:CAC39160.1); contains InterPro domain Late embryogenesis abundant protein; (InterPro:IPR004238) -2.43215919226142 -14.9126513941872 2.45625208182578e-07 0.00177955463328278 11.7755118011471 9.50469937682013 -2.43215919226142 0.215036193694284
AT1G49010_at 6.92544628409203 6.33886770342187 5.49644900755764 5.42824651886908 5.25281293403573 4.92787475978578 7.8558062386768 7.56876450113169 7.41984473177519 7.57588401435126 5.86636963136768 6.26421146568136 5.45996503886172 6.09905971537532 6.72379776318142 6.01504157198354 5.97389095030378 6.74198882469246 7.60233750144405 0.227012217812219 0.218363079318269 0.225482037370654 0.227390590657706 0.222715356850091 0.229918150496289 0.218363079318269 0.225874276182946 0.226594110323275 0.218612632752385 0.221415066198896 0.221578294422066 0.223245986109558 0.228824216594349 0.219787315427846 0.220578082973375 0.230053326713335 0.219842184651096 0.218363079318269 1 0|1 /|+ 18137033 18137384 18137251.5 18136313 18137593 + gene protein_coding_gene FALSE TRUE AT1G49010.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G08520.1); similar to MYB transcription factor MYB109 [Glycine max] (GB:ABH02851.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.6427617528889 -14.8528893128059 2.53767846795293e-07 0.00183829428218511 11.7625740885212 13.0621481781319 -1.6427617528889 0.126779967999788
AT4G35770_at 10.4299616063022 10.2642642529300 7.93792047409326 7.7471066522832 11.1365458343821 10.7298695943552 7.37370276856078 7.55790523836756 9.57987014730848 8.92394865140843 6.357666726034 5.56244723368987 6.56495630959308 6.77777623800285 4.94076701362216 6.53338765483355 6.89945371993787 6.78799224893663 9.98291052736803 0.216226742854804 0.222790124023384 0.221675324532243 0.221351106933649 0.223406507597313 0.225938542911652 0.226697023713906 0.216782207973781 0.228832430427117 0.21606491476043 0.221630045428863 0.226067577199428 0.221329419770133 0.222951282255157 0.246918691034303 0.218275039409299 0.228388443612653 0.227015499224219 0.21606491476043 4 4|0 +|/ 16945085 16945935 16945427.4 16944946 16946197 + gene protein_coding_gene FALSE TRUE AT4G35770.1|AT4G35770.2|AT4G35770.3 SEN1 (DARK INDUCIBLE 1) Senescence-associated gene that is strongly induced by phosphate starvation. Transcripts are differentially regulated at the level of mRNA stability at different times of day. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. similar to senescence-associated family protein [Arabidopsis thaliana] (TAIR:AT5G66040.1); similar to din1 [Raphanus sativus] (GB:BAA20356.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -1.35555918835439 -14.8507581498691 2.54063726768675e-07 0.00184018357298551 11.7621106353495 17.0464757202141 -1.35555918835439 0.0887791747576194
AT2G34640_at 6.69743337220223 6.68668166530552 5.367732796093 5.77565812598059 6.02990761918353 5.89943787923564 6.86075468871911 6.92157940241727 6.19093395872758 6.93531343898762 4.92652323222206 5.83770021514083 5.27593974401508 5.10647440740264 5.27301347517845 5.53154110147385 4.98418064647845 5.08903233742341 7.1461791787173 0.20396743416408 0.207057197393453 0.227632337389309 0.210823055650070 0.209738023238833 0.201288127873984 0.211697095804796 0.201288127873984 0.215149870911085 0.207296799482204 0.208101682504490 0.201847118837984 0.209427859131546 0.218270823811712 0.214556849485245 0.205695502016857 0.224157086872751 0.216607988206236 0.201730533105034 2 2|0 -|/ 14589159 14589893 14589478.222 14588965 14591778 - gene protein_coding_gene FALSE TRUE AT2G34640.1 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to hypothetical protein MtrDRAFT_AC144478g3v1 [Medicago truncatula] (GB:ABE93314.1) -1.26392652879925 -14.8453614663 2.54814697033501e-07 0.00184536803591662 11.7609364015214 12.2851612788393 -1.26392652879925 0.0748830292238073
AT1G30520_at 6.97454186341517 6.82429103025578 5.60954972760206 5.35340962993066 6.06513851637159 6.20211146988274 7.66138866725985 7.49767011941188 8.93739258697582 8.37312353575444 7.82343945158165 8.35843781780372 6.75597244558503 7.47502388398534 8.63260604134265 7.49752350835749 6.70358703703156 7.33497412204452 8.25257011656563 0.185296866282138 0.175205771857561 0.181917696920716 0.179170897918513 0.190182514181673 0.180047642216647 0.176776513191471 0.180935892893938 0.174860171278863 0.180090958589540 0.176527412765218 0.177981884958662 0.181295350181043 0.183704074361755 0.174946089429104 0.174860171278863 0.177643957824459 0.174860171278863 0.179802550534196 1 1 + 10812769 10813503 10813094.545 10810966 10813613 + gene protein_coding_gene FALSE TRUE AT1G30520.1 acyl-activating enzyme 14 (AAE14) similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT4G19010.1); similar to Acyl-CoA synthetase (ISS) [Ostreococcus tauri] (GB:CAL50517.1); similar to Os08g0130400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060922.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -1.19012689605219 -14.7778390842242 2.64422938980190e-07 0.00191468650115556 11.7461661274377 14.5703747704654 -1.19012689605219 0.0632889121315438
AT3G47800_at 10.3683231603265 10.308852552292 9.84004755666346 9.43042425019172 10.1475193683868 10.0079682877177 4.77256206120266 4.14586793550827 6.46821610040713 6.37384436612858 6.88447501915838 8.1313180325439 7.3327137523812 7.24636131537001 6.74751577975957 6.19310236500755 7.30496651633866 5.84686591904176 5.36100037672875 0.293959140568409 0.295977405767217 0.293707049919558 0.296309636554761 0.296404873845312 0.293238831888846 0.294738143012349 0.293825841220125 0.304912865874534 0.295313399268315 0.293376135490570 0.292855937303731 0.29601348906795 0.298714023933115 0.292855937303731 0.292855937303731 0.299566996563104 0.292855937303731 0.295764048581998 3 3 + 17647455 17647956 17647689.545 17645795 17648189 + gene protein_coding_gene FALSE TRUE AT3G47800.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE81353.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 1.67540816405143 14.7506085545602 2.68411515246213e-07 0.00194329937038258 11.7401681848564 15.1419965391386 1.67540816405143 0.132197004522241
AT1G72680_at 8.26560495724169 8.63456705490375 9.06887709243825 9.07110717816159 8.24101995227132 7.925502869937 4.80773961527976 4.73718639666573 4.47748492139387 4.75808912802718 4.59828901469412 5.05873556080336 5.23075458167301 5.77889869947678 5.32946537511385 5.48858824337869 5.71665343203405 5.64033388916717 4.82042025802153 0.254718972119428 0.260101465485479 0.267672708489904 0.263050722576725 0.258854458036081 0.249267644306647 0.248411106608643 0.249725423108386 0.265507303786502 0.249587341801581 0.251065711340899 0.249699253262406 0.251160067778334 0.248411106608643 0.248411106608643 0.248411106608643 0.26569841015773 0.248411106608643 0.253189454303635 1 1 - 27363025 27363752 27363447.727 27362894 27364678 - gene protein_coding_gene FALSE TRUE AT1G72680.1 cinnamyl-alcohol dehydrogenase, putative similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT4G39330.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding [Medicago truncatula] (GB:ABE84701.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 1.31761784045387 14.7215680099926 2.72739286756038e-07 0.00197435969682696 11.7337451660359 12.6142237822908 1.31761784045387 0.0848968134400498
AT2G25930_at 7.77401207166308 7.7106722682023 7.0982537168041 7.2386152226246 7.88640704265772 7.79465753518534 3.90323270324526 4.3346428383567 4.42678838359529 4.37415193167973 5.07865193012707 5.41893124907791 5.07437011151631 5.25042017898815 5.46888429419165 5.08949642990724 5.89550026390716 5.15943130331364 4.10174193088638 0.222214782923037 0.225731944498961 0.221069051773163 0.218536474775442 0.219426636544551 0.224467569558137 0.220413884445599 0.225581479610464 0.223320380405778 0.219818380404382 0.218536474775442 0.218536474775442 0.219435567797312 0.218536474775442 0.222090494708001 0.218536474775442 0.222054990932302 0.222527657608761 0.22490270766505 2 2 + 11069702 11070229 11069948.545 11066113 11070402 + gene protein_coding_gene FALSE TRUE AT2G25930.1 ELF3 (EARLY FLOWERING 3) Encodes a novel nuclear protein that is expressed rhythmically and interacts with phytochrome B to control plant development and flowering through a signal transduction pathway Elf3 controls rhythmic circadian outputs under constant light conditions. Identical to Protein EARLY FLOWERING 3 (Nematode-responsive protein) (ELF3) [Arabidopsis Thaliana] (GB:O82804;GB:O04419;GB:Q8L7A2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G21320.1); similar to early flowering 3 [Mesembryanthemum crystallinum] (GB:AAQ73529.1) 1.28870502351297 14.6948081531605 2.76796144423321e-07 0.002003450493336 11.7278023395381 11.5202390759336 1.28870502351297 0.0808456048121018
AT4G24700_at 5.9330520124483 6.32641343346508 5.64877417772423 5.78887434824707 6.02074409589892 6.11780964053144 8.91577078530335 8.85836934496528 8.01637606491716 8.46956338765344 7.65286571722556 7.59092644106587 7.5392116939358 7.4670373231708 6.85478799854862 8.59246258234113 7.56722717259657 6.98522850520557 8.76973814014589 0.241510215942305 0.243372897684491 0.257229846137819 0.266266195388260 0.247700328570994 0.268543399631584 0.244951324657737 0.24661517291571 0.259199112579001 0.247347668231162 0.242722897929396 0.238454592409263 0.24399630431051 0.240535932809834 0.261230814951118 0.238454592409263 0.261288401059941 0.249535376774562 0.254734858418837 4 4 - 12744826 12745154 12744975.182 12744632 12745323 - gene protein_coding_gene FALSE TRUE AT4G24700.1 similar to Os02g0595200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047311.1) -1.25084579837800 -14.6940756668147 2.76908133114606e-07 0.00200398415935041 11.7276393410638 14.6761147932397 -1.25084579837800 0.0748504754680812
AT2G29350_at 9.53033760346456 9.35834404393992 11.2833871728366 11.2356691734115 9.0434910326768 8.39492345927261 3.19571318538645 2.82461329148647 3.95461227370720 4.59802843506867 3.05468597617194 2.9451514993249 3.48004559858704 3.65669683603614 3.30225759563623 4.67596952984885 4.53916519401195 3.53559246333679 3.68320479214198 0.295574808532935 0.296961077439350 0.295069593695886 0.300164972331178 0.294217429954105 0.297281717597296 0.276648961674474 0.273207388937909 0.284481491887882 0.282801265229424 0.2744206232438 0.274176513371841 0.279216604011586 0.272699573829825 0.278284499795353 0.279377691057614 0.278506933941423 0.272794831271931 0.294247949713402 2 2|0 +|/ 12608624 12609238 12608896.5 12607991 12609633 + gene protein_coding_gene FALSE TRUE AT2G29350.1|AT2G29350.2|AT2G29350.3 SAG13 (Senescence-associated gene 13); oxidoreductase senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95189.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95190.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29290.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06907.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 1.66609804906332 14.6148899400663 2.8931800984674e-07 0.00209350511925101 11.7099145954535 11.9719652471053 1.66609804906332 0.132949893990858
AT3G10050_at 4.72982620404715 4.48072015934695 3.32932971750333 3.97401263055814 3.67717174180144 3.84972860822778 7.24969217876852 7.78718826141992 5.23809731595469 5.98099732427031 3.8722222597887 4.29906241644294 4.05196715338920 4.19920255660366 4.19565050201557 5.46075711060782 4.98607031363465 4.51282392498998 6.10837350383844 0.225510818991069 0.217984928181843 0.219872681563339 0.219134137285901 0.217984928181843 0.219716898234792 0.218517151080789 0.22866362864684 0.228666856873668 0.221064934245552 0.219531622560706 0.217984928181843 0.220668744546269 0.221339188839150 0.220929953350813 0.223102347048122 0.221687803323211 0.225447768733822 0.218184741128814 3 3|0 -|/ 3099209 3100027 3099514.2 3098730 3101766 - gene protein_coding_gene FALSE TRUE AT3G10050.1 OMR1 (L-O-METHYLTHREONINE RESISTANT 1); threonine ammonia-lyase first enzyme in the biosynthetic pathway of isoleucine Identical to Threonine dehydratase biosynthetic, chloroplast precursor (EC 4.3.1.19) (Threonine deaminase) (TD) (OMR1) [Arabidopsis Thaliana] (GB:Q9ZSS6;GB:Q9SPF1); similar to ATSR (ARABIDOPSIS THALIANA SIGNAL-RESPONSIVE), serine racemase [Arabidopsis thaliana] (TAIR:AT4G11640.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74610.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74611.1); similar to threonine dehydratase/deaminase mutant [synthetic construct] (GB:AAT74612.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Threonine dehydratase, C-terminal; (InterPro:IPR001721); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Threonine dehydratase I; (InterPro:IPR005787) -1.84144960568835 -14.5871731853656 2.93807261554842e-07 0.00212569553734928 11.7036616596937 9.9962298098951 -1.84144960568835 0.154431076146551
AT4G09020_at 9.4879049640422 9.1496230012752 9.27571512141076 9.18056720745193 10.0530141293274 9.47148775410935 7.6994056193609 7.37860896401144 7.38919010658952 7.28916992963124 9.6115352322542 9.43592520089693 8.64794931574546 9.51300394498393 9.07852901750113 8.51593883478432 8.6751160343301 9.23667952079964 5.99712568674431 0.213151448561148 0.214889884275975 0.221292894289906 0.216423307194701 0.222232596538543 0.225904572440794 0.213151448561148 0.232639981783427 0.242521086520431 0.258032281592054 0.213151448561148 0.213151448561148 0.222278305637785 0.213151448561148 0.217600802447179 0.213151448561148 0.230739956662905 0.221042005606228 0.248966622028976 4 4|0 +|/ 5787876 5788760 5788371.125 5784073 5788999 + gene protein_coding_gene FALSE TRUE AT4G09020.1 ATISA3/ISA3 (ISOAMYLASE 3); alpha-amylase Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated. similar to ATISA1/ISA1 (ISOAMYLASE 1), alpha-amylase/ isoamylase [Arabidopsis thaliana] (TAIR:AT2G39930.1); similar to isoamylase isoform 3 [Solanum tuberosum] (GB:AAN15319.1); similar to isoamylase isoform 3 [Pisum sativum] (GB:AAZ81837.1); similar to isoamylase [Hordeum vulgare] (GB:BAD89532.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) 1.63190823962135 14.5207508438271 3.04885055272519e-07 0.0022055384898414 11.6885724514744 16.9526224511155 1.63190823962135 0.130029735749327
AT4G26670_at 7.46197843539191 8.04092353959725 7.06557314750476 7.14432072543348 8.7987306144655 7.95235373189652 4.86698395244063 4.7705099387653 4.24157920483668 3.98220316834155 6.73757798341482 7.22995368048799 6.51084728294807 6.75630383784203 6.87822972518973 5.67647557123256 5.99546183200331 6.38934496031917 3.47458736618416 0.252729683438574 0.242211435573417 0.244491511877648 0.243191717492915 0.252984697399872 0.245547394033966 0.246135760618437 0.243517197059933 0.246134823942804 0.243022472070722 0.240948640325911 0.250856115923259 0.250121407238722 0.241458311446059 0.24816712210982 0.243719677330815 0.23794531914166 0.238222351907321 0.242027614371299 4 4 + 13452368 13453543 13453062.364 13452123 13453990 + gene protein_coding_gene FALSE TRUE AT4G26670.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein similar to protein translocase [Arabidopsis thaliana] (TAIR:AT5G55510.1); similar to mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94438.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 2.03873168383427 14.4898843259658 3.10190767495561e-07 0.00224360982129539 11.6815100430096 12.2232872301705 2.03873168383427 0.178761336250452
AT2G46830_at 8.84687726158981 8.89584368396 8.4410582698701 8.61230926553668 8.7929103818504 8.63900600654938 11.0343121323706 10.9464436854735 10.8223101065335 10.7755765521629 9.78732612026596 9.85629889201495 10.0945150543115 10.0951905036133 9.23183852670394 10.7263369354112 10.4063888875811 9.87417858397695 10.9221800657152 0.0930768951351176 0.0901452232095899 0.100285580779612 0.0924355829166995 0.0873115547566062 0.0953289295623914 0.0875711380530044 0.0877211691933198 0.0904787911069474 0.0873014315753382 0.0855038829530511 0.0876817734697402 0.0855038829530511 0.0900615803177937 0.0907083722853324 0.0859722469535864 0.086268465483138 0.087834221213446 0.0855038829530511 2 2|0 +|/ 19255138 19255711 19255375 19252746 19255983 + gene protein_coding_gene FALSE TRUE AT2G46830.1|AT2G46830.2 CCA1 (CIRCADIAN CLOCK ASSOCIATED 1); transcription factor encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of ARABIDOPSIS. similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to LHY (LATE ELONGATED HYPOCOTYL), DNA binding [Arabidopsis thaliana] (TAIR:AT1G01060.3); similar to late elongated hypocotyl [Castanea sativa] (GB:AAU20773.1) -1.07028063169126 -14.4597229747853 3.1547488021203e-07 0.0022815143336934 11.6745778236826 19.7006108006278 -1.07028063169126 0.0434818688098222
AT3G09580_at 7.63307229843207 7.78527251779125 5.91071988385082 6.08495543876081 7.35725132455923 6.90723268536692 8.2247404360773 8.31055249636904 9.28639770855893 8.41604134837697 7.62937316135614 7.68393627801742 7.29284569577578 7.37101768045684 8.19740777754558 7.89062621619534 7.26450086767239 7.37688156170824 8.70688565040284 0.169179555435093 0.174758340204222 0.195473895217381 0.196779466595914 0.182999237407027 0.188837516112529 0.169028118685173 0.182978453751118 0.189182890612129 0.170763913018595 0.17135039256516 0.173901644725749 0.169028118685173 0.178070276056225 0.169028118685173 0.174907406155986 0.186849811848686 0.172570376376212 0.174917255567095 3 3 - 2942692 2943183 2942897.727 2942509 2944083 - gene protein_coding_gene FALSE TRUE AT3G09580.1 amine oxidase family protein similar to HEMG2/MEE61 (maternal effect embryo arrest 61), oxidoreductase/ protoporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT5G14220.1); similar to putative oxidoreductase, FAD-binding [Oryza sativa (japonica cultivar-group)] (GB:BAC07074.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -1.31907709248579 -14.4483381560551 3.17495466967227e-07 0.00229580972164002 11.6719531204614 15.4724405804612 -1.31907709248579 0.0888165732970663
AT2G38010_at 7.35473511209733 7.67415583906969 4.80740279382217 5.10948173292452 5.33369140546641 5.09398902371177 7.45215737705307 7.73426986182403 7.64875338769702 7.48445842760681 7.23586463926536 8.1740635884398 6.74726378476669 7.44207562635971 7.7047871917198 7.06883469333965 6.29034273598177 7.03008974031955 7.4341847106127 0.20506061635699 0.204256432037543 0.224254825678575 0.214377739189827 0.211277869457489 0.217519298845073 0.206719236984177 0.209651571218281 0.211811203321933 0.208594161259611 0.204256432037543 0.204256432037543 0.207137185852003 0.209678208088336 0.210706310338418 0.207123696962125 0.221634366592344 0.204256432037543 0.205653428824535 2 2 + 15916258 15916915 15916654.818 15913940 15917009 + gene protein_coding_gene FALSE TRUE AT2G38010.1|AT2G38010.2 ceramidase family protein Identical to Neutral ceramidase precursor (EC 3.5.1.23) (NCDase) (N-CDase) (Acylsphingosine deacylase) (N-acylsphingosine amidohydrolase) [Arabidopsis Thaliana] (GB:Q304B9;GB:Q3EBK8;GB:Q7XJQ9); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823)|similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT1G07380.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823) -1.38924428357231 -14.4139766610349 3.23681984674698e-07 0.00234022074919807 11.6640044327472 13.6870507725776 -1.38924428357231 0.0994614231087677
AT4G14270_at 10.8994238826955 11.0022190591756 11.2326131057907 11.1744316795455 11.8820697599172 11.5945888133126 9.9565137263242 9.94037589475804 8.4720571570329 9.30159535946095 10.0687955241324 9.98752810130187 10.5460896745575 10.1581739956906 9.8298610779139 9.93408665957086 10.5457543897328 10.3039539144987 9.13510350697275 0.12765041074509 0.125337562644436 0.13485103510017 0.126903114300398 0.125836634148218 0.133748414499765 0.127521030625438 0.123161488428221 0.156117503188842 0.129204042717921 0.128265108633120 0.130009074673959 0.122438779737058 0.123296321738033 0.124847679905707 0.126987995547303 0.131665519456322 0.130952179540252 0.132248072878885 4 4 + 8218540 8219005 8218716.455 8218373 8219317 + gene protein_coding_gene FALSE TRUE AT4G14270.1|AT4G14270.2 Protein containing PAM2 motif which mediates interaction with the PABC domain of polyadenyl binding proteins. similar to ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) [Arabidopsis thaliana] (TAIR:AT2G41430.2); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE94464.1)|similar to ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) [Arabidopsis thaliana] (TAIR:AT2G41430.2); similar to ERD15 [Capsicum annuum] (GB:ABB89735.1); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE94464.1) 1.11174388746124 14.4010281646159 3.26048025494325e-07 0.00235700117629847 11.6609986166184 20.5309623693551 1.11174388746124 0.0538580064498888
AT1G65480_at 7.70938337707333 8.10802210622357 9.67247431672818 9.83477740982257 10.3584672626662 10.1419384055546 8.8741440268791 8.96493324304815 3.80204428113001 4.1967434613545 2.88032551664155 1.88650346749406 6.02353014550737 4.83759526664914 2.74560980878218 7.73383234668855 8.36680005297779 4.4441686297022 3.63035033111424 0.249545983970566 0.251823797275113 0.257741261704067 0.259953688155218 0.257243422810671 0.256948984500305 0.254686928615946 0.256560853199957 0.267832321115857 0.257514539591934 0.25189224891139 0.254221940480555 0.258402844641587 0.256071089154288 0.251590636629381 0.249545983970566 0.252298928872004 0.252395040017901 0.254719262925907 1 1 + 24335218 24337244 24336475.909 24335091 24337597 + gene protein_coding_gene FALSE TRUE AT1G65480.1 FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. FT is a target of CO and acts upstream of SOC1. Identical to Protein FLOWERING LOCUS T (FT) [Arabidopsis Thaliana] (GB:Q9SXZ2;GB:O04467); similar to TSF (TWIN SISTER OF FT), phosphatidylethanolamine binding [Arabidopsis thaliana] (TAIR:AT4G20370.1); similar to flowering locus T-like protein [Vitis vinifera] (GB:ABF56526.1); contains InterPro domain Phosphatidylethanolamine-binding protein; (InterPro:IPR001858); contains InterPro domain PEBP; (InterPro:IPR008914) 1.28810497841298 14.3954675585117 3.2707001114256e-07 0.00236406204053843 11.6597060283737 13.5786050245853 1.28810497841298 0.0848466665186775
AT1G61580_at 5.89714549587448 6.03598939239871 6.6125118421491 6.80602162582669 6.14295148445845 6.31734608809539 5.24974413865235 5.41860982281208 4.74761234364961 4.67140837685219 5.54676481421187 6.16189214055519 6.15817169959133 6.00092630758736 6.90938248933668 5.89343449990893 6.41956043119762 6.00766567019731 4.65120878624345 0.17797710878858 0.175651103204954 0.196155592629483 0.179978960678759 0.177040904108835 0.179022982669550 0.18133851060875 0.185049258846108 0.198759743514213 0.193700482381010 0.178121395630507 0.178113226787491 0.187303561445076 0.179845554340496 0.175438491601905 0.182876189965063 0.180807525860644 0.185011546153345 0.182128356271074 1 1 - 22724546 22725135 22724838 22724357 22726817 - gene protein_coding_gene FALSE TRUE AT1G61580.1 ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2); structural constituent of ribosome Identical to 60S ribosomal protein L3-2 (ARP2) [Arabidopsis Thaliana] (GB:P22738;GB:Q9SY92); similar to ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G43170.3); similar to ribosomal protein (GB:AAA66161.1); similar to ribosomal protein L3 [Lycopersicon esculentum] (GB:AAR17783.1); similar to ribosomal protein L3A [Nicotiana tabacum] (GB:AAQ96335.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) 1.13324190101144 14.3601052597206 3.33653430963153e-07 0.00241131334557070 11.6514609369322 11.4736906156943 1.13324190101144 0.0588520114359516
AT3G21870_at 5.28912821723124 5.61318347970471 4.56781559330098 5.10105827506663 5.16680514057983 5.20940620809503 7.62698194337173 7.65310108815021 7.83074329624097 7.51190632725884 5.45726993810609 6.66500676287579 6.2753850632886 6.19652533118362 6.731662037434 7.2714576588091 6.32696636184987 5.66736320534741 7.69908920925255 0.255485499504954 0.247253344387141 0.255421540687176 0.25890810552502 0.256514318714252 0.259149802222362 0.243360381770287 0.246904525176138 0.252912398556045 0.251000666921388 0.241982833616125 0.245871592264473 0.249739212773662 0.247571259219540 0.250508724276256 0.241982833616125 0.258930929008356 0.241982833616125 0.252100116923780 3 3 - 7703944 7704720 7704391 7703873 7704836 - gene protein_coding_gene FALSE TRUE AT3G21870.1 CYCP2;1 (cyclin p2;1); cyclin-dependent protein kinase similar to CYCP3,1 (cyclin p3,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G45080.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -1.44547622195475 -14.3355538213757 3.38311048815973e-07 0.00244463563874422 11.6457110352542 12.7807020710772 -1.44547622195475 0.108329542344494
AT1G20030_at 6.89289993191149 7.17045621245335 6.1918809314966 6.41433766987265 7.78094971869955 7.34084204727886 6.25574415049685 6.48244901392763 3.73396152314467 3.98391572363046 5.79633363543426 6.17564956690215 6.22365259020389 7.00615178991915 5.85707441861864 5.06551612880502 5.98920474751992 5.71442590943204 2.38082020486782 0.216836359527536 0.224778470584130 0.234087730951513 0.222642870286626 0.224015627136421 0.228526033075949 0.223469023279823 0.222636991138445 0.249282785562299 0.230321769660161 0.237698143285527 0.216836359527536 0.216836359527536 0.222957272945809 0.229414736490205 0.217706965932073 0.220068110322741 0.221227823874733 0.248033081375149 1 1 + 6946207 6946971 6946586.273 6945416 6947335 + gene protein_coding_gene FALSE TRUE AT1G20030.1|AT1G20030.2 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to Os03g0244200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049533.1); similar to SCUTL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94928.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938)|similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G75800.1); similar to Os03g0244200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049533.1); similar to SCUTL1 [Vitis vinifera] (GB:AAF06346.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 1.42194193955650 14.3067396055287 3.43870035388884e-07 0.00248446100568469 11.6389360239480 11.4885617506348 1.42194193955650 0.105494433464569
AT4G25100_at 11.8629879330831 11.9504330727010 11.1311118881557 11.1435825016195 11.1050174481880 11.1817084646165 12.7852961378684 12.9843059833402 12.5097533284049 12.6542786020662 11.2273932381746 12.0044222907478 12.0687291574543 11.6372952629941 9.43685728063295 11.6397573056278 12.2013779335354 11.8353586052090 11.8596121881683 0.0766577561029613 0.075404832816657 0.0754700628589142 0.0769270654217318 0.0754855076689146 0.0795953504102223 0.0761353766185659 0.0770784451283419 0.082796086108669 0.0766583613506933 0.0774230266116883 0.0760875861859644 0.0765615601233328 0.0779555740997201 0.0861130697572772 0.0753017383277127 0.0765631004464494 0.0783302668438094 0.0753017383277127 4 0|4 /|- 12884677 12885605 12885283 12884310 12886831 - gene protein_coding_gene FALSE TRUE AT4G25100.1|AT4G25100.2|AT4G25100.3|AT4G25100.4 FSD1 (FE SUPEROXIDE DISMUTASE 1); iron superoxide dismutase Fe-superoxide dismutase Identical to Superoxide dismutase [Fe], chloroplast precursor (EC 1.15.1.1) (SODB) [Arabidopsis Thaliana] (GB:P21276;GB:Q9FE21;GB:Q9SW16); similar to FSD2 (FE SUPEROXIDE DISMUTASE 2), iron superoxide dismutase [Arabidopsis thaliana] (TAIR:AT5G51100.1); similar to Fe-superoxide dismutase (GB:AAA32791.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) -1.0451082640097 -14.3040966269786 3.4438500897314e-07 0.00248783730482196 11.6383131346986 23.6918622239516 -1.0451082640097 0.0399484984608692
AT2G36410_at 7.81130653683162 7.92433440111774 7.45324171928471 7.71704674257052 8.81342554726341 8.5959006714087 6.45067647572084 6.18445182716995 6.75297175162944 5.21777806210242 8.16579915841898 7.26887726468398 7.9027596033914 7.76165418068415 7.07729901011309 6.73525887590062 7.30960271101374 6.72012364885304 5.90676778293167 0.235602620634283 0.236485757293231 0.235942642245969 0.236140263860359 0.237218902777235 0.237081845816504 0.24961413244631 0.249350222628983 0.246519999074208 0.249634152229659 0.230720017437029 0.242604477476363 0.244967168809921 0.230345567897059 0.242225691685878 0.236310595552407 0.256274719639209 0.233117919186389 0.232995403708237 2 2 + 15286130 15286867 15286364.091 15285848 15287767 + gene protein_coding_gene FALSE TRUE AT2G36410.1|AT2G36410.2|AT2G36410.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52920.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52920.2); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033) 1.2303553171665 14.2653268791850 3.52038782340694e-07 0.00254277612484683 11.6291478253678 14.2822201595977 1.2303553171665 0.0775008697963111
AT1G51090_at 7.55501332430755 7.27167677924727 8.73559118689552 8.65315920135012 9.27214208024985 8.7720963592659 8.29233723408854 7.43751491868064 3.44674189109146 4.51521163971284 6.05551587263672 5.23387607115426 6.91721698605566 7.29514277045408 5.27681234758005 8.3344797806035 7.28773940217358 5.6533149421698 3.24589952339986 0.320113223038219 0.323389958764000 0.320113223038219 0.329703799993360 0.328191242614546 0.331420131216229 0.320113223038219 0.325143563410852 0.348277898069863 0.327424009047293 0.323651942788464 0.320174474863798 0.322611498364687 0.322002007637708 0.333589927172406 0.320113223038219 0.32197689149528 0.325561907471845 0.339350387901409 1 1 + 18936847 18937387 18937183.545 18936605 18937618 + gene protein_coding_gene FALSE TRUE AT1G51090.1 heavy-metal-associated domain-containing protein similar to metal ion binding [Arabidopsis thaliana] (TAIR:AT4G16380.1); similar to unknown protein [Glycine max] (GB:AAN03471.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 1.99496144819737 14.1747022593878 3.7068012046116e-07 0.0026770518299705 11.6075164248651 13.3700480303464 1.99496144819737 0.178828492061407
AT2G26560_at 11.0109154121175 11.2969866790766 11.5121079061466 11.5637705193366 11.5127340574651 11.1015657588416 6.7207779677928 6.39998420925551 8.6089078747703 5.70229659547924 7.10526247334194 7.43548488820523 7.76011130361563 8.07308760725352 5.02286936517458 6.3912204605239 7.73893970771178 5.95658633678516 5.84295074179208 0.276983771554246 0.278621959382387 0.280652229959949 0.277496838160608 0.283303976195194 0.279771268685436 0.271050649385956 0.262465516760043 0.280096119290647 0.26657414271236 0.268520185612744 0.266568129062156 0.264288542371498 0.263455828413691 0.277729338809872 0.262623935926293 0.275217551979814 0.272097294009378 0.275481161490215 2 0|2 /|- 11301003 11301617 11301348.556 11300847 11302884 - gene protein_coding_gene FALSE TRUE AT2G26560.1 PLP2 (PHOSPHOLIPASE A 2A); nutrient reservoir encodes a lipid acyl hydrolase with wide substrate specificity that accumulates upon infection by fungal and bacterial pathogens. Protein is localized in the cytoplasm in healthy leaves, and in membranes in infected cells. similar to PLA IVA/PLP1, nutrient reservoir [Arabidopsis thaliana] (TAIR:AT4G37070.2); similar to patatin-like protein [Gossypium hirsutum] (GB:AAX99411.1); contains InterPro domain Patatin; (InterPro:IPR002641) 1.39138601193306 14.1548697043783 3.74904820337948e-07 0.00270718770766032 11.6027434461213 16.9666038163409 1.39138601193306 0.103323025879671
AT3G30775_at 5.33619034752402 5.58205080425951 3.9424237308462 3.91853294699338 5.27073642271071 5.19810432505049 6.06615449922078 6.23228884493424 6.0314764314466 3.79899750600294 3.54618747176347 4.14676166697008 3.3389559759152 3.37857769298128 4.09598541196143 4.68573384990067 3.86736354780595 3.59358499135115 4.52146564780408 0.257574861027541 0.257574861027541 0.262323853384210 0.264711911954702 0.263676300451503 0.276802630360201 0.260433154627679 0.257803209433779 0.271632615104939 0.257574861027541 0.25920193122956 0.258388042556934 0.262650661538029 0.259041690820402 0.272648160490124 0.257958867584346 0.264581726352949 0.270638603524094 0.263133245057054 3 3|0 -|/ 12451492 12452107 12451839.4 12451115 12453727 - gene protein_coding_gene FALSE TRUE AT3G30775.1 ERD5 (EARLY RESPONSIVE TO DEHYDRATION 5, PROLINE OXIDASE); proline dehydrogenase Encodes a proline oxidase that is predicted to localize to the inner mitochondrial membrane, its mRNA expression induced by high levels of Al and by osmotic stress. The promoter contains an L-proline-inducible element. Identical to Proline oxidase, mitochondrial precursor (EC 1.5.99.8) (Osmotic stress-induced proline dehydrogenase) (POX) [Arabidopsis Thaliana] (GB:P92983;GB:P92945;GB:Q96281); similar to proline oxidase, putative / osmotic stress-responsive proline dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G38710.1); similar to proline dehydrogenase [Glycine max] (GB:AAR86686.1); contains InterPro domain Proline dehydrogenase; (InterPro:IPR002872) -1.08702890162725 -14.1310788999042 3.80043661457711e-07 0.00274391523572467 11.5969991841505 9.5011220841086 -1.08702890162725 0.0530276811070184
AT3G57260_at 12.3941815327638 12.3381129941830 13.233185867469 13.1136930447253 12.3040846305566 12.0234942428690 6.6351399120525 6.35310472072326 8.15564263078694 5.97742674118195 4.86564713051821 5.61723525638598 7.27972706985346 6.75721505766169 5.40946773569664 7.14359969328049 7.33085868404282 5.51175109077704 7.2190771516137 0.250189158430355 0.248094531201510 0.255577041599976 0.253461572887501 0.247571710476258 0.256295308668756 0.245703215997845 0.252148179558676 0.250216600835546 0.24400698986333 0.245009908347079 0.244251094696368 0.241670576990231 0.241670576990231 0.245473347630151 0.244692776106767 0.242433522440901 0.251769729435984 0.248808976387603 3 3 - 21199717 21200255 21200040.455 21199496 21200838 - gene protein_coding_gene FALSE TRUE AT3G57260.1 BGL2 (PATHOGENESIS-RELATED PROTEIN 2); glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds beta 1,3-glucanase Identical to Glucan endo-1,3-beta-glucosidase, acidic isoform precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase) ((1->3)-beta- glucanase) (Beta-1,3-endoglucanase) (Pathogenesis-related protein 2) (PR-2) (Beta-1,3-glucanase 2) (BG2) [Arabidopsis Thaliana] (GB:P33157;GB:Q8LD94;GB:Q9M2M1); similar to BG3 (BETA-1,3-GLUCANASE 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57240.1); similar to beta-1,3-glucanase 2 (GB:AAA32755.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 1.18026759836191 14.0229143217158 4.04418798962089e-07 0.00291949930970732 11.5706237447113 17.7277845628201 1.18026759836191 0.0725379902429977
AT3G05880_at 11.3913337556757 11.6121748666851 11.1160507065183 11.1568961960746 11.7351562225979 11.5577431978354 9.86784994966741 9.91782111091674 10.3729639297376 9.6966155325426 11.7520495088893 11.4179104862943 11.3774206637474 11.2197348097826 11.8226646651713 11.2391293489790 11.1843338818017 11.1968752280574 9.84994485832152 0.0919536939119945 0.0911554550274076 0.0933289718656885 0.0914299630082741 0.0914567690037074 0.0923217627024285 0.0979476351384445 0.0997251036205337 0.0946811236503648 0.0993870225149894 0.0914998680179808 0.0911554550274076 0.0926693271099759 0.0962659595875851 0.0977410116915525 0.0915264447711011 0.0988671192047783 0.0950363240826998 0.101350820944642 3 3|0 -|/ 1756201 1756474 1756304.333 1755503 1756546 - gene protein_coding_gene FALSE TRUE AT3G05880.1 RCI2A (RARE-COLD-INDUCIBLE 2A) Induced by low temperatures, dehydration and salt stress and ABA. Encodes a small (54 amino acids), highly hydrophobic protein that bears two potential transmembrane domains. Identical to Hydrophobic protein RCI2A (Low temperature and salt-responsive protein LTI6A) (RCI2A) [Arabidopsis Thaliana] (GB:Q9ZNQ7); similar to RCI2B (RARE-COLD-INDUCIBLE 2B) [Arabidopsis thaliana] (TAIR:AT3G05890.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABD33197.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 1.0611283552884 13.9547677037501 4.20668437730102e-07 0.00303638478353587 11.5537856010835 21.7315980495585 1.0611283552884 0.0502787531587181
AT2G16700_at 7.60276299097327 7.53959378094226 8.52622385704962 8.16189745166138 8.60725898068537 8.18268698792091 6.42355661772315 6.27515059919654 6.09071376349634 5.97747001721488 7.32923600083083 7.05527956993557 6.59543364811042 6.88553726838717 7.13216530071364 6.91258093775159 6.80262342250607 7.56104981680518 5.16811002993138 0.205827045521646 0.205827045521646 0.215374339278179 0.206304476723753 0.208570821597025 0.214271105386161 0.215449732237261 0.218608452945034 0.224637806735962 0.21793064802505 0.207876589379469 0.211457909019321 0.208848344996900 0.212631641371012 0.207045769995271 0.205827045521646 0.212707869672041 0.206344541448983 0.226013619940989 2 0|2 /|+ 7252010 7252523 7252170.875 7251690 7252823 + gene protein_coding_gene FALSE TRUE AT2G16700.1 ADF5 (ACTIN DEPOLYMERIZING FACTOR 5); actin binding Encodes actin depolymerizing factor 5 (ADF5). Identical to Actin-depolymerizing factor 5 (ADF-5) (AtADF5) (ADF5) [Arabidopsis Thaliana] (GB:Q9ZNT3;GB:Q9SLE7); similar to actin binding [Arabidopsis thaliana] (TAIR:AT4G34970.1); similar to Os03g0243100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049525.1); similar to actin depolymerizing factor [Elaeis guineensis] (GB:AAF60173.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 1.34902889876819 13.9043435299735 4.33160703758303e-07 0.00312612079902368 11.5412149878647 14.0547261661912 1.34902889876819 0.100760296265398
AT2G34300_at 4.84106252038342 5.04613380381078 3.26015586756993 3.04946823695079 3.07304498841879 3.5825521550806 6.17677118424607 6.1271930616474 6.82242045623105 6.64398048104042 6.8860866931033 7.07534473402876 5.7579946978046 6.74646411159523 6.80163587262465 6.07910806791891 4.69085594867052 6.62106355313894 6.70814552684281 0.220885267766233 0.215536481034511 0.218726381312407 0.223249817084215 0.223467338202191 0.218670967087 0.217638663973983 0.215049456199505 0.228544933727570 0.212021931314603 0.212054249644197 0.215381963596168 0.216768378997594 0.220630568081543 0.216554697203696 0.212021931314603 0.224468178307906 0.213576829515895 0.214039113093137 2 2 - 14480998 14481669 14481317.818 14480744 14484509 - gene protein_coding_gene FALSE TRUE AT2G34300.1|AT2G34300.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G51070.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G29470.2); similar to dehydration-responsive protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96619.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22395.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.34950722101385 -13.8103503116735 4.57565949443153e-07 0.00330179589118179 11.5175263661303 10.9231317428795 -1.34950722101385 0.102160758468118
AT2G15890_at 12.3558363706414 12.3547668343197 12.2827278313599 12.2200828141523 13.0637264291325 12.8631638120455 10.8216632829806 10.6279689098550 10.1617691303870 10.2017275148385 11.3452042167565 10.689693681789 11.3765783111260 11.4340482444355 10.7639678968029 10.9355184840764 11.8079613814114 11.1752666621088 10.1340309679131 0.0813094889967872 0.079516310821923 0.0806534594355598 0.0799244782221472 0.0880594866627804 0.0808898165769584 0.081277565757378 0.079516310821923 0.0947311992015397 0.0858808442224421 0.0827802276132245 0.079828267280618 0.0833521242466852 0.0797893354652237 0.082914928675986 0.079516310821923 0.079516310821923 0.0822251768471122 0.085040308602933 2 2|0 -|/ 6928307 6929014 6928787.6 6927451 6929107 - gene protein_coding_gene FALSE TRUE AT2G15890.1|AT2G15890.2 MEE14 (maternal effect embryo arrest 14) similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50944.1) 1.04627684716191 13.8062459719549 4.58666021959589e-07 0.00330927534843843 11.516484297363 22.7521782343239 1.04627684716191 0.0494550190167839
AT3G26210_at 9.51528822649074 9.9079978437946 10.0880980860407 10.2140369627356 9.43563509902703 9.10506798891932 5.17785130972207 5.37701210305867 6.87435027315763 4.63231731501459 4.94826901238269 6.44856755289031 4.5543480190623 6.74345900829842 3.72664646120616 6.61087273138885 6.5002477127558 5.69868353868273 4.20932575013176 0.252481699289153 0.250911338886774 0.253175395503537 0.255129045209253 0.250245667724451 0.256473719630689 0.258196168475163 0.249325680893920 0.268118306229381 0.264095329673658 0.254927797760684 0.256463220785434 0.253903406874867 0.254108102617277 0.260925426354113 0.250057144489215 0.268176015269621 0.253017252540500 0.266907369731151 3 3 - 9594709 9595125 9594876.818 9594369 9596480 - gene protein_coding_gene FALSE TRUE AT3G26210.1 CYP71B23 (cytochrome P450, family 71, subfamily B, polypeptide 23); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B23 (EC 1.14.-.-) (CYP71B23) [Arabidopsis Thaliana] (GB:Q9LTM0;GB:Q6AWT7); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.31569723594812 13.7709268404372 4.68255246802563e-07 0.00337799335043369 11.5074902137616 14.0488990528160 1.31569723594812 0.0977446506001864
AT2G47890_at 8.63119663327982 8.881260302629 8.32904487269747 8.54847873831764 9.31522977780294 8.88572256918025 7.37066970382399 7.07502334269534 4.59233764217465 5.61050291738464 6.71823517786039 6.6180659299438 7.49349533712656 7.67281561362437 6.36042188531721 6.49791148604904 7.48581414526072 6.57514635301636 4.67317059207494 0.269368015647345 0.267280965256714 0.266271139073538 0.268967452510038 0.271858484634473 0.280718607534141 0.270555002837208 0.27421839060282 0.297242108124965 0.273290543611364 0.266271139073538 0.266271139073538 0.270959810746822 0.266271139073538 0.266271139073538 0.266271139073538 0.274268029224852 0.27198239362179 0.281625240322142 2 2 + 19615733 19616518 19616027.636 19615066 19616715 + gene protein_coding_gene FALSE TRUE AT2G47890.1|AT2G47890.2 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 13 (COL13) [Arabidopsis Thaliana] (GB:O82256;GB:Q7GAB9); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT3G21880.1); similar to Os03g0351100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050114.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20080.1); similar to Os07g0667300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060574.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315)|Identical to Zinc finger protein CONSTANS-LIKE 13 (COL13) [Arabidopsis Thaliana] (GB:O82256;GB:Q7GAB9); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G28050.1); similar to Os03g0351100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050114.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20080.1); similar to Os07g0667300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060574.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 1.37457467551964 13.7220949839152 4.81883256267446e-07 0.00347582392745709 11.4949757013025 14.3227825550047 1.37457467551964 0.107037670330475
AT3G46670_at 4.68706320067925 4.76639554754012 4.13197644891862 3.8927382980885 4.14376388287347 4.29430364310937 7.38419770099311 7.30143265275676 6.37316671206242 7.10635758306197 6.31651129973382 6.84933224883581 6.37850911774846 6.27242379081244 6.86757181166812 6.71506425089857 5.80697597978979 6.61758554946275 6.50175588837711 0.207758267968935 0.205864684462567 0.218821037649578 0.212059490339630 0.205041119811089 0.206827490093916 0.214774101715592 0.213283101594064 0.211852407659313 0.20768995778281 0.209083009848964 0.205763891112033 0.203569883397603 0.213383078478566 0.204907037865036 0.206834689639795 0.205838676091198 0.203569883397603 0.203569883397603 3 3 - 17203792 17204322 17204104.455 17203574 17205382 - gene protein_coding_gene FALSE TRUE AT3G46670.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G46660.1); similar to glucuronosyl transferase homolog, ripening-related - tomato (fragment) (GB:S39507); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.05075333947997 -13.6735759536092 4.95863113734603e-07 0.00357616477625396 11.4824493596967 11.6444456638462 -1.05075333947997 0.0527861508965054
AT2G33830_at 12.0013466028687 11.9134902581965 11.4611359191388 11.4526760905527 12.6100362439539 12.2294165083931 7.9366984995076 7.32307384660202 8.88233249585757 7.20678424233912 8.95585735443389 8.08958336587907 9.03154473795137 8.98346793387506 8.54244811014069 7.9013942004621 9.52469658775069 8.81640110580477 7.58169221578574 0.193588714810454 0.191560724688876 0.196264144802070 0.191185193430341 0.191910675490639 0.200421479771138 0.183708951983851 0.188088590226857 0.188440153072655 0.192763346397617 0.189713858898983 0.187244736921371 0.184646235807625 0.187096325708905 0.183708951983851 0.18990777158409 0.188107240870372 0.190651155894684 0.1865854889774 2 2|0 -|/ 14317000 14317334 14317127.25 14316560 14317427 - gene protein_coding_gene FALSE TRUE AT2G33830.1|AT2G33830.2 dormancy/auxin associated family protein similar to DRM1 (DORMANCY-ASSOCIATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G28330.1); similar to auxin-repressed protein [Brassica oleracea] (GB:AAL67436.1); contains InterPro domain Dormancyauxin associated; (InterPro:IPR008406) 1.49253420596283 13.5540642948351 5.32266069933021e-07 0.00383817063028701 11.4511981813161 19.176456159084 1.49253420596283 0.125890209205427
AT1G22530_at 7.64526546039754 7.6132727125216 7.90988835133595 7.87102408816686 8.66832285128002 8.27966521780847 5.34258109564018 5.4320197429506 8.71892591083637 6.76434452773238 9.9039246490907 7.72703737275106 8.73609318569879 8.96873571047285 8.61574487443642 7.40418069059294 6.50383380425962 8.43740369539475 7.66061184152454 0.176758970134016 0.170262720150673 0.171621021944296 0.179397861009756 0.170424425546159 0.180090545840473 0.200049910635683 0.189286469523897 0.174914203430380 0.180427984051414 0.179536603006771 0.168744461403875 0.171478494929786 0.172348640926772 0.172019614380044 0.171238699761888 0.189106668057072 0.1790910285937 0.169252812962673 1 1|0 -|/ 7955772 7956816 7956200.2 7955482 7958431 - gene protein_coding_gene FALSE TRUE AT1G22530.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-2 (PATL2) [Arabidopsis Thaliana] (GB:Q56ZI2;GB:Q9SK94); similar to PATL1 (PATELLIN 1), transporter [Arabidopsis thaliana] (TAIR:AT1G72150.1); similar to putative cytosolic factor [Trifolium pratense] (GB:BAE71201.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 1.12321609770486 13.5387490793989 5.3714257265629e-07 0.00387279794885185 11.4471521729884 15.3461282772801 1.12321609770486 0.0695645297211114
AT2G34070_at 7.53325196423759 7.56887417358087 9.21519337903533 9.31797967414968 9.2179731995477 8.99188590198813 8.61410154992587 8.52443673696209 9.15742795620933 8.43965481081053 9.69268545600757 8.60252700107451 9.72397197046323 9.61563206489185 8.85036574268837 9.53635938711077 9.76372596446509 9.49504662499136 7.95860394944658 0.146697041098270 0.136810065804149 0.133091608191399 0.129268165646244 0.127516960340857 0.130530503563074 0.129101189070078 0.122645266072387 0.132176712995060 0.130947628286357 0.129324909300375 0.122645266072387 0.126870995374509 0.129269508923152 0.125322222662021 0.126621342259750 0.129174734739121 0.125521092532979 0.140597278548197 2 2 - 14394712 14395404 14394988.273 14394500 14397309 - gene protein_coding_gene FALSE TRUE AT2G34070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29050.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 1.00853448507153 13.4882732600791 5.53570336662923e-07 0.00399068855700301 11.4337502984878 17.5872628300703 1.00853448507153 0.0461083389124439
AT4G33700_at 7.03468139877502 7.58541818570833 7.29613258086319 7.22221229293581 7.5519299711065 7.86190411341196 5.06799662434503 4.68894505712565 4.00241085184724 4.88009465233026 6.00557803857824 5.53458792775588 5.81670604691965 6.00067982763333 6.3061875830689 5.98990922030545 6.28219032897936 5.90832569970647 4.23992210709982 0.213927281126841 0.198892833440627 0.211926801765153 0.201265890189783 0.201517481835884 0.201930882561675 0.201136551551133 0.213177316676799 0.226351655012545 0.207790031857040 0.201357773275124 0.204868831579479 0.205883066267764 0.210830427259577 0.218064631974364 0.198892833440627 0.204745415275960 0.198914640540778 0.202107135517290 4 4|0 -|/ 16176550 16177445 16176946.8 16176279 16179484 - gene protein_coding_gene FALSE TRUE AT4G33700.1 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G14520.1); similar to CBS [Medicago truncatula] (GB:ABE86592.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) 1.49758123505842 13.4477875760643 5.6715169353219e-07 0.00408802940698003 11.4229260589489 11.9659840886394 1.49758123505842 0.128170232717050
AT1G80050_at 7.30129194850853 7.04599497887093 4.29680457638287 4.37857861838077 5.906211161731 6.28098433099255 7.13470861065374 7.13665082320146 7.06233161449423 7.75812963698257 6.97729585911101 8.403051121587 6.53422997774129 6.14769841849181 7.8902414566143 7.92724534525517 6.14936072511873 7.02374203226853 7.78735664973298 0.227559776468171 0.225307190377146 0.254392316635776 0.257944611684983 0.231231844670002 0.239975161679941 0.226373191337907 0.224791245082922 0.232988889043748 0.239901724283583 0.229286992217053 0.244343867245274 0.2261734276267 0.240042099695345 0.237399476236697 0.233927527521188 0.259785132520442 0.233443221156299 0.256723604838254 1 0|1 /|- 30116632 30117904 30117254.333 30116407 30118217 - gene protein_coding_gene FALSE TRUE AT1G80050.1 APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2); adenine phosphoribosyltransferase Encodes an adenosine phosphoribosyl transferase(E.C:2.4.2.7), a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. This isozyme has high affinity for cytokinins and is likely to be localized to the cytosol. Identical to Adenine phosphoribosyltransferase 2 (EC 2.4.2.7) (APRT 2) (APT2) [Arabidopsis Thaliana] (GB:Q42563;GB:Q39004); similar to APT5 (ADENINE PHOSPHORIBOSYLTRANSFERASE 5), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT5G11160.1); similar to Os04g0504000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053244.1); similar to Os02g0613900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047421.1); similar to putative adenine phosphoribosyltransferase form 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD19719.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -1.17167405090832 -13.4343228037594 5.71750541314897e-07 0.00412060615125647 11.4193112606339 13.5189268398036 -1.17167405090832 0.0797408845405297
AT4G21870_at 5.8291889062062 6.18294738732054 3.68560406556322 4.19386227336161 6.26055697193356 5.57333953872691 6.07710489571976 6.6106479139949 8.2063344406763 7.74262751767401 5.1298023965281 3.74455519391569 4.50168381500249 5.85330460496567 4.34292995467905 8.64835774972952 5.24815476642367 4.08245981472996 7.4816366108333 0.274465633652742 0.267397131796368 0.270987110437660 0.271366729191996 0.270925832893129 0.279976164200861 0.2738825656502 0.267397131796368 0.291019172994101 0.269376872776394 0.267397131796368 0.270759030217314 0.267397131796368 0.270716060263419 0.268079381771919 0.267397131796368 0.281247245661178 0.273031269355789 0.272109035296541 4 4|0 -|/ 11603770 11604237 11603956.3 11603580 11604343 - gene protein_coding_gene FALSE TRUE AT4G21870.1 26.5 kDa class P-related heat shock protein (HSP26.5-P) similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83716.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -1.93146252473923 -13.3784709566939 5.91275214496309e-07 0.00426072919566040 11.4042373435716 12.0537092741323 -1.93146252473923 0.184804833346873
AT1G75250_at 5.99944624848954 6.71811567929458 4.82760466122302 5.31888797763852 5.54012590362734 5.45450922820855 7.55073900408267 7.9443755057719 6.46629441882779 6.70126379328296 4.43842872903218 5.78174916400175 5.90152133021625 6.00681689951035 3.42362677937279 6.08836054499876 5.09933671969946 3.77501626431614 7.36154856797683 0.222383084840447 0.220934303922672 0.242624025934305 0.223198407504317 0.222644715875866 0.236033945145856 0.221580133217544 0.237857355714520 0.232748873774626 0.222327597613997 0.226296156215427 0.222362391217035 0.219623956752931 0.221938875811179 0.244373347995287 0.229889181071970 0.231769260218379 0.234994488286732 0.224901858045753 1 1 - 28248810 28249074 28248968.636 28248009 28249114 - gene protein_coding_gene FALSE TRUE AT1G75250.1|AT1G75250.2 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19510.1); similar to Chain A, Crystal Structure Of The Myb Domain Of The Rad Transcription Factor From Antirrhinum Majus (GB:2CJJ); similar to MYB transcription factor MYB142 [Glycine max] (GB:ABH02867.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.77328285310219 -13.3283350287100 6.09435943569633e-07 0.00439098597341920 11.3905958396757 12.12292184967 -1.77328285310219 0.165999474622963
AT1G73800_at 9.14991966088855 9.1343265880825 9.87621757751097 9.90814442824214 8.5297771295584 8.13382184769722 3.36979906859477 3.62796642373175 6.66636367132717 4.1853094700692 4.16916258045704 4.17970583250392 4.06319787176865 4.68310734127723 4.27926257613541 5.03125369818213 4.95861761993127 5.5873761328684 4.34006040141749 0.268571997632468 0.262696878879735 0.26751643977952 0.269605122309692 0.270019308395849 0.257657640875268 0.271608920617212 0.258294137861792 0.279600230029576 0.255931752354607 0.255923977063435 0.263891363956898 0.259094671205922 0.258885959264427 0.261976542879911 0.25843285554036 0.273143627940223 0.266115872043444 0.272070852832054 1 1|0 -|/ 27749438 27750291 27749984.714 27749109 27750369 - gene protein_coding_gene FALSE TRUE AT1G73800.1 calmodulin-binding protein similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G57580.1); similar to At1g73800/F25P22_22 [Medicago truncatula] (GB:ABE78902.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR012416) 1.17326829306517 13.2992409904668 6.20259105385388e-07 0.00446834659519634 11.3826313977956 12.5576824093275 1.17326829306517 0.0820310935142531
AT4G35630_at 8.82244340162714 9.02763400058772 10.0352206683302 10.1756958120973 8.57663668801221 7.8451089806665 6.75300536918398 7.14058776555928 5.64886317402033 6.32943857359186 8.09827902934435 8.73117919389627 7.13924038242599 7.98034506149699 8.45598958690854 8.1919402371191 7.27677272360561 8.13401621971525 5.84625536371704 0.206389850828883 0.204191555148868 0.217705821912822 0.216575656487291 0.206301290770521 0.211092928365343 0.208439331338789 0.199597431548111 0.233688848570850 0.212898636856924 0.203622216718277 0.198499317415545 0.207201512520186 0.198499317415545 0.202297928695514 0.198499317415545 0.224575271046390 0.208986925759689 0.214411632560696 4 4 + 16904926 16905431 16905137 16904064 16905727 + gene protein_coding_gene FALSE TRUE AT4G35630.1 PSAT (phosphoserine aminotransferase); phosphoserine transaminase Encodes a phosphoserine aminotransferase which is involved in serine biosynthesis in the chloroplast which operates via the phosphorylated pathway. Identical to Phosphoserine aminotransferase, chloroplast precursor (EC 2.6.1.52) (PSAT) [Arabidopsis Thaliana] (GB:Q96255); similar to phosphoserine aminotransferase, putative [Arabidopsis thaliana] (TAIR:AT2G17630.1); similar to phosphoserine aminotransferase [Medicago truncatula] (GB:ABE77665.1); contains InterPro domain Phosphoserine aminotransferase; (InterPro:IPR003248); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) 1.64084958512065 13.2938283841355 6.22296160420559e-07 0.00448239924350929 11.3811457776391 15.5182862564699 1.64084958512065 0.149588650450091
AT3G27880_at 4.83415196994432 5.52295846583576 6.14566371675246 6.32318012890191 7.1555425128991 6.6492815316509 4.28867222075922 4.37615912435701 3.46825975437633 3.26948674454181 4.48699766461218 4.71267071326745 5.09056501698694 5.09112559372439 4.99768843051392 4.91509636159035 4.72951010252827 4.41757258553693 3.17036149688187 0.224208354653427 0.224846913224416 0.219276424672778 0.229169921825746 0.223796475234160 0.234915543528588 0.221368085871456 0.226273696232666 0.233367309916375 0.226843589202229 0.219276424672778 0.226499721843578 0.219276424672778 0.219748768376108 0.220830982445884 0.219276424672778 0.231869895824537 0.225676722869582 0.224343078538746 3 3 + 10339816 10340364 10340033.909 10339449 10340673 + gene protein_coding_gene FALSE TRUE AT3G27880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23710.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84838.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 1.6576910853277 13.2896174876756 6.2388610221511e-07 0.00449322770815322 11.3799891412439 9.71587919581845 1.6576910853277 0.151847022073222
AT3G16660_at 9.6020008611594 9.87358921055506 6.63629353444025 6.76431791089439 8.13516354656569 7.68765029889835 8.4846068307346 8.89645891322664 8.90722305668959 7.71779120133742 6.92749843203216 7.90413704558208 7.20618798259946 7.73067081718095 8.32795099222886 6.41433984119907 7.36604938209827 7.43367887260255 8.27884684382203 0.268215518213849 0.262079463603444 0.268556561087703 0.250393369643876 0.267558715090177 0.271554537921646 0.280708843733976 0.261726256188227 0.268183871581420 0.260556706280649 0.250393369643876 0.250393369643876 0.250393369643876 0.261081039674321 0.250393369643876 0.26539066326081 0.250393369643876 0.265587985413005 0.250393369643876 3 3 + 5676929 5677103 5677024.143 5676835 5677921 + gene protein_coding_gene FALSE TRUE AT3G16660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16670.1); similar to phylloplanin [Nicotiana tabacum] (GB:ABE03627.1) -1.39789024723926 -13.2446677205826 6.41143079534876e-07 0.00461687131573064 11.3675957224015 16.1175607406293 -1.39789024723926 0.117376577993747
AT4G39950_at 10.3265531613668 10.3128187210006 10.6974972389070 10.7583391699264 9.4380028940168 8.79976946622912 8.07377292237023 8.0368207297642 4.16560017593567 4.95211619484237 5.95549504508323 7.19734348806515 6.99544780406729 6.79282679948629 6.11937587727714 6.87365845544033 5.64848096038185 7.06683338246872 4.71975417335097 0.265175201901411 0.26788295593894 0.273294057813558 0.278538025922722 0.266264221355916 0.275148500450810 0.265620379868100 0.273609189183483 0.285430626172985 0.27143622697036 0.266961625075273 0.265552223169362 0.269755978667305 0.275511222663879 0.265175201901411 0.265175201901411 0.276445891031196 0.271527879137780 0.276425313404127 4 4 + 18526885 18527253 18527067.636 18525240 18527573 + gene protein_coding_gene FALSE TRUE AT4G39950.1 CYP79B2 (cytochrome P450, family 79, subfamily B, polypeptide 2); oxygen binding Belongs to cytochrome P450 and is involved in tryptophan metabolism. Converts Trp to indo-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. Identical to Cytochrome P450 79B2 (EC 1.14.-.-) (CYP79B2) [Arabidopsis Thaliana] (GB:O81346;GB:Q9SMR0); similar to CYP79B3 (cytochrome P450, family 79, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G22330.1); similar to cytochrome P450 [Brassica napus] (GB:AAN76810.1); similar to Cytochrome P450 79B1 (GB:O81345); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.35230167690088 13.2205426084926 6.50623946993639e-07 0.0046844924183542 11.3609085990762 15.1522832419027 1.35230167690088 0.111159538426231
AT3G14050_at 9.26440059617438 9.38120320254898 10.0793397663736 10.2700892374914 10.0374775553875 9.99272964226574 7.68065473429951 7.91464277186115 8.4683064626692 8.05120749932524 8.55545586148708 8.53950426259823 9.30680151324525 8.88344644330257 7.78322812703675 9.6148203318049 9.10192675787493 8.34305197409879 8.18843821597139 0.157882841732740 0.160182292742065 0.160577942388463 0.157057545351619 0.158931488328118 0.162631592287887 0.16289075701904 0.158687598690449 0.156918670407933 0.158242824302753 0.161916930221822 0.157565325005362 0.153361582497385 0.15929541904653 0.162988723083543 0.155982601747674 0.162841164330734 0.163665779442835 0.156677445344156 3 3 - 4650941 4651489 4651268.909 4650764 4653921 - gene protein_coding_gene FALSE TRUE AT3G14050.1 RSH2 (RELA-SPOT HOMOLOG); catalytic similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT homolog 1 [Medicago truncatula] (GB:CAJ00006.1); similar to RSH2 [Nicotiana tabacum] (GB:AAQ23899.1); similar to RSH-like protein [Capsicum annuum] (GB:AAK82651.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) 1.03236453688384 13.2167708987615 6.52120250429784e-07 0.00469461368284401 11.3598608906602 17.8285739224268 1.03236453688384 0.0565496958560121
AT2G43820_at 8.8565869948057 9.16368128394352 7.71110631526809 7.80652556755607 9.11618804452739 8.95317410880503 6.95055923947403 6.87021473509319 8.2036174133378 7.64012294316765 3.87422003008521 3.69005433948825 4.87200513489193 5.01707485084701 5.43110629891838 6.96129011421597 6.53477254258713 5.97620854611447 7.74183130123738 0.220853462089748 0.219747396051776 0.214472321016907 0.214741030156751 0.21912237372509 0.227556797572444 0.213991008220225 0.215074593125653 0.216103237058721 0.213306582692247 0.218055534708463 0.226064589739860 0.212888231952477 0.221923759028391 0.235104891985646 0.212730233566609 0.215540503123562 0.213544080543367 0.216184537195722 2 2 + 18160193 18160711 18160331.545 18159304 18160985 + gene protein_coding_gene FALSE TRUE AT2G43820.1 GT/UGT74F2 (UDP-GLUCOSYLTRANSFERASE 74F2); UDP-glucosyltransferase/ UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Induced by Salicylic acid, virus, fungus and bacteria.Involved in the tryptophan synthesis pathway. Independent of NPR1 for their induction by salicylic acid. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G43840.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.06538889569701 -13.1899798818979 6.62859700227513e-07 0.00477126412223764 11.3524013205071 14.7567288868797 -1.06538889569701 0.0639226820897445
AT1G52410_at 7.35776091474567 7.64272456295704 5.34449589763591 5.31268039204278 7.03143588475547 6.35204785374596 4.06643563931936 4.13712088905576 2.33502308103539 3.70033962409089 4.80823036137058 6.17598178001121 6.11398830301708 6.02988222758713 6.1757972788721 6.44392963881137 5.57777572290787 5.62474066181525 3.38720215855992 0.270685948779649 0.270367329835182 0.260832205504789 0.26242056802478 0.264141682543967 0.271698857651298 0.267501071112516 0.260832205504789 0.310998075073585 0.269488671073267 0.260832205504789 0.260832205504789 0.260832205504789 0.27093085240508 0.264954519000408 0.260832205504789 0.271701047639709 0.260832205504789 0.279715271991102 1 1 + 19528435 19528881 19528637.818 19524397 19529293 + gene protein_coding_gene FALSE TRUE AT1G52410.1|AT1G52410.2 TSA1 (TSK-ASSOCIATING PROTEIN 1); calcium ion binding / protein binding|TSA1 (TSK-ASSOCIATING PROTEIN 1) Contains a novel calcium-binding repeat sequence. Binds TSK in vitro. Localizes to small cytoplasmic vesicles in interphase cells. In cells synchronized for cell division, TSA1 and TSK relocalize to ends of spindle microtubules that are ahead of separating chromatids during metaphase and anaphase of mitosis. May be involved in mitosis together with TSK. Expressed preferentially in the flower and shoot apex. Can form multimers. similar to (TSA1-LIKE), unknown protein [Arabidopsis thaliana] (TAIR:AT3G15950.1); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_814574.1)|similar to (TSA1-LIKE), unknown protein [Arabidopsis thaliana] (TAIR:AT3G15950.1); similar to PREDICTED: similar to Viral A-type inclusion protein repeat, putative [Danio rerio] (GB:XP_685984.1) 1.46854514888129 13.1852204616173 6.64788095317102e-07 0.00478447992199718 11.3510729050109 10.4104106049628 1.46854514888129 0.128198470771039
AT2G45470_at 7.40986110661013 8.03121502488739 3.26220818497912 3.23848491585202 4.20773995985814 4.51537847173425 8.11516324745913 8.44796145124454 8.03186919530525 8.28510138002297 9.98123207699634 10.3268758929010 9.21210243067927 9.43384357222761 10.3538621325747 9.14442710793312 7.39972976787266 9.188184953975 8.25425546474476 0.188985392217788 0.192699867281444 0.216042904860091 0.202774604392925 0.199034060129245 0.223165412303731 0.177913294836711 0.185018769542823 0.190433016980424 0.18278177154852 0.178304209678510 0.183568242045024 0.179187171152631 0.191475117410526 0.183822261822077 0.177913294836711 0.200554998019002 0.177971916434410 0.184401727619902 2 2 - 18749979 18750374 18750172.909 18749614 18751185 - gene protein_coding_gene FALSE TRUE AT2G45470.1 FLA8 (Arabinogalactan protein 8) Identical to Fasciclin-like arabinogalactan protein 8 precursor (AtAGP8) (FLA8) [Arabidopsis Thaliana] (GB:O22126;GB:Q56ZW9;GB:Q8L9B1;GB:Q9FR46); similar to FLA10 (fasciclin-like arabinogalactan-protein 10) [Arabidopsis thaliana] (TAIR:AT3G60900.1); similar to fasciclin-like protein FLA5 [Triticum aestivum] (GB:ABI95395.1); similar to Os04g0574200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053617.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.50273688128689 -13.1687116544972 6.71525631441197e-07 0.00483229844385086 11.3464575234520 14.6887220062877 -1.50273688128689 0.133155368332178
AT1G48570_at 6.63453805665542 6.73999853091554 6.09253730752031 5.81328280780445 4.95126679048738 4.89242222480127 7.11832671470187 6.75773429958438 4.65836427342527 5.37692389255785 3.89223129556184 3.96538491809658 3.66338611175236 3.71232248088638 4.19282760401239 4.46901106809005 4.73961964278361 4.36698290080844 5.15766146500956 0.250807905089328 0.248737072476651 0.245826482416751 0.246097534448813 0.245826482416751 0.245826482416751 0.264729708832291 0.255723151126396 0.2581199980377 0.250319995038428 0.250372178128624 0.245826482416751 0.246804082618121 0.24669588181256 0.248597861930957 0.245826482416751 0.249672449596944 0.246545824781107 0.249370440574401 1 1|0 -|/ 17959127 17960357 17959793.444 17958946 17961387 - gene protein_coding_gene FALSE TRUE AT1G48570.1 zinc finger (Ran-binding) family protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G70650.1); similar to Zinc finger, RanBP2-type [Medicago truncatula] (GB:ABE26599.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876) -1.15718395436311 -13.1422198041835 6.82496968923336e-07 0.0049105656914034 11.3390265699226 10.7197819897654 -1.15718395436311 0.0816470656738313
AT3G55120_at 4.81870199595159 5.18941771129931 3.66725959281191 3.53486969794829 3.66839879358647 4.16389475364677 6.8222933135766 6.98426591938276 4.99649490250551 5.90271206869571 4.91165798827588 4.86947615873647 4.59540594045678 4.67050881919538 4.55056804353843 3.99186162841984 5.18895256374416 4.79646560622186 4.67741181478667 0.269070488523763 0.266926540732661 0.272818619222174 0.27453642667764 0.262525821740915 0.262525821740915 0.275509349439266 0.272355666444419 0.267305054002502 0.269242112825326 0.262525821740915 0.267760307140574 0.266836668105134 0.271279057696940 0.263896969396175 0.262525821740915 0.268250951083831 0.262525821740915 0.262525821740915 3 3|0 -|/ 20441326 20442121 20441762.667 20441091 20442447 - gene protein_coding_gene FALSE TRUE AT3G55120.1 TT5 (TRANSPARENT TESTA 5); chalcone isomerase Catalyzes the conversion of chalcones into flavanones. Required for the accumulation of purple anthocyanins in leaves and stems. Identical to Chalcone--flavonone isomerase (EC 5.5.1.6) (Chalcone isomerase) (TRANSPARENT TESTA 5 protein) (CHI) [Arabidopsis Thaliana] (GB:P41088;GB:Q8W532;GB:Q9LE13;GB:Q9LF74;GB:Q9LF75); similar to chalcone isomerase [Arabidopsis thaliana] (TAIR:AT5G66220.1); similar to Chalcone--flavonone isomerase (Chalcone isomerase) (GB:O22651); contains InterPro domain Chalcone-flavanone isomerase; (InterPro:IPR003466) -1.34520409698828 -13.0264694886867 7.32833911874593e-07 0.00527200716202583 11.3061995079856 9.80067190006024 -1.34520409698828 0.113044387361574
AT1G64890_at 7.47529587245002 7.83217944306456 6.71099642480829 6.47126284764878 7.13652483509917 7.18413684595242 4.73403313930767 4.98599638282743 3.71299668033946 3.45059171603605 5.01938785508289 5.24620943792064 5.30509219041564 5.49050236566707 5.36577891286104 4.22324051324269 5.45579261885682 5.70374747860366 3.31667328105546 0.273757459177909 0.264814021101276 0.268607217012676 0.276791727612245 0.259569693479967 0.264361728754334 0.259933145179714 0.259569693479967 0.279070724310764 0.273939022813684 0.263758190584609 0.259642459465846 0.268453340836863 0.267805440215193 0.268304020591061 0.262530781252222 0.265792978047738 0.264564934541877 0.271157108964221 1 1 + 24114233 24114754 24114575.091 24113205 24115063 + gene protein_coding_gene FALSE TRUE AT1G64890.1 integral membrane transporter family protein similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT1G04570.1); similar to Biopterin transport-related protein BT1 [Crocosphaera watsonii WH 8501] (GB:ZP_00518975.1); similar to Os05g0389400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055433.1); similar to Os03g0795000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051544.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324) 1.17582619570120 13.0228091941673 7.34491772993924e-07 0.0052831993231453 11.3051518186993 10.9261229642573 1.17582619570120 0.0866294518837063
AT4G32020_at 10.4027243558234 10.5292254607851 11.5425204230042 11.4228776332841 11.9709287004185 11.6756089721094 11.2298601872907 11.1265148850476 10.3463398549312 9.87488354481962 11.3150723750942 11.1498894298313 11.6587730582261 11.4073710399541 10.9338748628820 11.3530942694021 11.6170510994642 11.3192277209074 10.0573650197033 0.0917027099848417 0.0885622458791642 0.0907055701501134 0.0953806199062514 0.0885359465531532 0.089344338419374 0.0880978762920486 0.0882822941842702 0.0922609103609874 0.0978450367244187 0.0895790615706935 0.0880978762920486 0.0899992915093242 0.0959776523923376 0.0897697711532598 0.089032334652977 0.0988403788025956 0.0880978762920486 0.0966047236991335 4 4 + 15488089 15488494 15488328.727 15487950 15489456 + gene protein_coding_gene FALSE TRUE AT4G32020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25250.1); similar to Os02g0797600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048398.1) 1.04116706772642 13.0076392641497 7.4140737887736e-07 0.00533220186888598 11.3008033755604 21.9561110964478 1.04116706772642 0.0619649090316143
AT1G18570_at 6.27006612800484 6.55474326455813 7.68366059589724 7.70962983970341 8.04473357123262 6.95387978389258 2.7446569670186 2.61263014173476 4.13248565828481 2.76753104208986 3.62279877338529 4.76740771696626 3.9290054360779 4.32336431008703 3.81531529851741 4.10540854664509 4.90799284042495 4.12932093493372 3.04055319678205 0.27670955988882 0.271172473428735 0.281323673731487 0.275030779261311 0.2676810263466 0.287739217709621 0.272440344116986 0.2676810263466 0.287483017111089 0.273287127568504 0.269869829350078 0.269320163679369 0.273950534073301 0.28263805255368 0.271239506055824 0.2676810263466 0.276637236809652 0.278345504553834 0.268727991437383 1 1 + 6390461 6390948 6390702 6389404 6391260 + gene protein_coding_gene FALSE TRUE AT1G18570.1 MYB51 (myb domain protein 51); DNA binding / transcription factor putative transcription factor: R2R3-MYB transcription family similar to MYB122 (myb domain protein 122), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74080.1); similar to MYB27 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29569.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.96950262771493 12.9967553493798 7.46413774920388e-07 0.00536746145545251 11.2976772075364 9.82855005209625 1.96950262771493 0.196484389149834
AT2G42280_at 7.4723267191948 7.25380091090449 7.7152798083976 8.01029667928154 8.94080589842908 8.36479190733174 5.17564972303524 5.01885589827146 5.93474453772823 5.35492863799489 6.1594057550392 6.04653159925956 6.71535657215955 6.14209887696684 6.01457622158673 6.68808812489411 6.70565155177764 6.64530817623289 5.58154866749618 0.179984963300146 0.177340758057171 0.183627873902036 0.189431588375689 0.197983282521268 0.210028866668527 0.185178051662731 0.198479875410921 0.189861713242001 0.189277116183538 0.181389103794010 0.179064169412483 0.180938766221544 0.190745155840180 0.184642345764879 0.179092206933953 0.188544216671935 0.179999980639317 0.177562189944778 2 2 - 17618991 17619464 17619222.636 17618263 17620597 - gene protein_coding_gene FALSE TRUE AT2G42280.1|AT2G42280.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51140.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to Aldehyde dehydrogenase; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94655.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G51140.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to Aldehyde dehydrogenase; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94655.1) 1.39676087792081 12.9779132469638 7.55170049276272e-07 0.0054296726542964 11.2922527319633 13.2506598051787 1.39676087792081 0.121282173575232
AT2G25730_at 8.30903461792916 8.21007498071804 8.31803087445935 8.11226441801815 9.07408927587582 8.38024326145747 5.96041524565002 5.99921645333528 5.5991531752763 5.69321346663483 7.06758788785784 6.9731506665036 7.116841774583 7.03588910353511 6.79545844106487 6.48602877279551 7.76005774740229 6.98065041121618 5.24952418569051 0.203450854076729 0.200333014795772 0.202428115852922 0.209102354169365 0.211783522150252 0.216879235816256 0.210103450177661 0.202739694877522 0.214802196730945 0.207363215893276 0.207168491564655 0.203022512320954 0.202502458455056 0.201383837422784 0.202718586471462 0.199899117995925 0.208077996196158 0.208963524451650 0.206021055628741 2 2|0 -|/ 10963863 10965393 10964412 10963380 10979807 - gene protein_coding_gene FALSE TRUE AT2G25730.1 binding / heme binding similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83627.1); similar to Os01g0593000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043457.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83626.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Globin-related; (InterPro:IPR012292); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 1.43223306223191 12.9618336716406 7.6273305855467e-07 0.00548328795794953 11.2876110048956 14.0658819958406 1.43223306223191 0.126585750982647
AT3G23340_at 5.39842793202078 5.6308639650365 6.2314330491098 6.00284735128399 6.72022117844152 6.71905496689746 5.73146570927074 5.52603990349548 3.84001091527324 4.52021415997439 5.93642571523791 6.09168304876359 5.85803450595316 6.15798365059363 4.93229884996496 5.15702682212651 6.10070733732814 5.75246757247218 5.0613978227267 0.229920334330871 0.227851905330596 0.233562650004709 0.227851905330596 0.232785889342145 0.241433939780626 0.234955310220882 0.227915516567021 0.253390863828809 0.240150164811429 0.227851905330596 0.229274543675553 0.232600274937843 0.236280342855404 0.234093400577447 0.227851905330596 0.231358773103062 0.233281385116042 0.244023251803722 3 3 + 8352802 8353763 8353435.455 8350810 8353966 + gene protein_coding_gene FALSE TRUE AT3G23340.1 CKL10 (Casein Kinase I-like 10); casein kinase I/ kinase similar to CKI1 (CASEIN KINASE I), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G14340.1); similar to CKL13 (CASEIN KINASE LIKE 13), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT1G04440.1); similar to CKL8 (Casein Kinase I-like 8), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G43320.1); similar to Os02g0810400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048470.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.06057194872878 12.9609073098932 7.63171334743142e-07 0.0054856755541337 11.2873432368458 11.1061456255094 1.06057194872878 0.0666831184685527
AT1G49720_at 9.08659316161576 9.11909429871942 9.15844593295837 9.25994143037526 10.1247947323557 9.55373754118087 7.50506302427614 7.48187842645923 5.89382479690047 6.43035084126566 7.32120932373146 7.20003029168658 7.83156953528068 7.87102597174472 6.53728836230974 6.90197152277995 7.48714141093638 7.40992957241659 5.77811155368002 0.295387269312341 0.295336181009922 0.296462483884003 0.297114068563729 0.299514362069386 0.302515358791101 0.292497327595609 0.29731596379052 0.319061358011926 0.296380440926828 0.291629373765608 0.296477653928483 0.293112607746392 0.291629373765608 0.293060055010549 0.291629373765608 0.31026585184048 0.30458535608929 0.307447221208600 1 1 + 18405089 18405951 18405307.182 18403760 18406296 + gene protein_coding_gene FALSE TRUE AT1G49720.1 ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1); DNA binding / transcription factor/ transcriptional activator Identified as a protein that binds to abscisic acid response elements. May mediate transcriptional regulation of ABA responses. similar to ABF4 (ABRE BINDING FACTOR 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G19290.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 1.25599884984765 12.9553892061624 7.65787854386983e-07 0.00550371730947924 11.2857474117320 15.5882518082307 1.25599884984765 0.100610341354518
AT2G28400_at 4.76102046641694 5.5224115134528 7.10090247739502 7.42870454700471 7.5720227077904 7.09029020886019 4.21055362714463 4.33677603768535 4.06604833895181 3.65254559990902 4.98052668227642 3.24407286045370 5.28161819402218 4.47163979628374 3.94800575681313 4.66604020120967 5.99132231228318 4.04684427432045 3.39335046499733 0.231976337720623 0.231976337720623 0.243765426417024 0.240136186737527 0.240314790422665 0.237364500224021 0.238126823502584 0.231976337720623 0.244003277850241 0.240114977049932 0.237327988018561 0.23689266696101 0.238264126425102 0.242770406859970 0.234583438252909 0.237612049652711 0.246437905337419 0.237447481764343 0.236632985372277 2 2 - 12155680 12156048 12155861.909 12155381 12156129 - gene protein_coding_gene FALSE TRUE AT2G28400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60680.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 1.73253343292137 12.9438441880044 7.71294537182093e-07 0.00554252254419052 11.2824041874881 10.1442053120490 1.73253343292137 0.16735100213155
AT2G38470_at 8.03824200595944 7.90657577704302 8.85829566877068 9.14399257355428 8.40197496100631 7.91527740574254 4.74428553871906 4.30079118789334 6.24605050076936 4.86195356891352 5.74743996669754 6.81707153659264 4.87459645337675 5.67518763614036 5.6439623263519 5.62635486910491 5.90790524130271 6.68177688592625 4.94294446446648 0.266874271155344 0.265941795065722 0.269290750345605 0.271312821964778 0.268968024193427 0.274318688937901 0.265941795065722 0.265941795065722 0.266928641854682 0.265941795065722 0.273168807540527 0.265941795065722 0.265941795065722 0.277417379546745 0.274884948068555 0.265941795065722 0.266552026521684 0.278807933905525 0.272808319390936 2 2 + 16117036 16117583 16117364.273 16115537 16117844 + gene protein_coding_gene FALSE TRUE AT2G38470.1 WRKY33 (WRKY DNA-binding protein 33); transcription factor Member of the plant WRKY transcription factor family. Regulates the antagonistic relationship between defense pathways mediating responses to P. syringae and necrotrophic fungal pathogens. Identical to Probable WRKY transcription factor 33 (WRKY DNA-binding protein 33) (WRKY33) [Arabidopsis Thaliana] (GB:Q8S8P5); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.1); similar to WRKY transcription factor 33 [Capsella rubella] (GB:AAP82932.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 1.42694110562579 12.9331434494874 7.76437925126745e-07 0.00557870649203566 11.2793000922873 13.0247309110793 1.42694110562579 0.126284910268982
AT1G07720_at 6.59727074032285 6.82295150939224 8.55932662654806 8.7466808788802 8.88552015762906 9.018171623971 8.34902638665881 8.7711253999425 7.54571793907202 7.44587058922156 9.20561244733434 8.58356796180705 9.11146386026781 9.09233683309565 8.09003023609093 8.29148089261874 8.74577670977765 8.49366798710525 7.42267038889243 0.139940343665929 0.140669441053515 0.136923073793476 0.138360260869024 0.135301976510884 0.137253087708849 0.135725141696935 0.139105672054125 0.140265425632568 0.143298676924986 0.141236451939486 0.134799525355777 0.135307598725903 0.143811881012751 0.141792163121231 0.134799525355777 0.139676164002524 0.135414762416746 0.149471524259946 1 1 - 2391163 2391542 2391381.091 2390652 2392450 - gene protein_coding_gene FALSE TRUE AT1G07720.1 beta-ketoacyl-CoA synthase family protein Identical to 3-ketoacyl-CoA synthase 3 (EC 2.3.1.-) (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (KCS3) [Arabidopsis Thaliana] (GB:Q9LQP8); similar to beta-ketoacyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT2G28630.1); similar to 3-ketoacyl-CoA synthase 3 (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (GB:Q9LQP8); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE84281.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE80003.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; (InterPro:IPR013747); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392) 1.19882689481408 12.9292987425782 7.78295230288615e-07 0.00559127293439341 11.2781835497714 16.3053400429552 1.19882689481408 0.0918653659946456
AT3G15040_at 6.60362592222779 6.82459502034853 7.02270579754482 6.99071440395232 7.25679958132948 7.38529541724844 5.62441316639132 5.30815810446486 5.38682812458181 5.42729832612658 6.78462722704586 6.63634026968614 6.99853837962986 6.67771838911526 6.81307575224158 6.36862394876557 7.03264175487204 6.32038391138432 6.05587695511574 0.210205999433384 0.199917845902649 0.194987399092625 0.194987399092625 0.202231714768572 0.201200226815698 0.204632565165765 0.202628405545445 0.219270120291019 0.226175321736461 0.195934796224642 0.197588188649988 0.196754852584281 0.21111877515777 0.214717416700036 0.194987399092625 0.198561752303139 0.197301438293506 0.205448037454831 3 3 - 5065544 5066013 5065740.091 5064711 5066697 - gene protein_coding_gene FALSE TRUE AT3G15040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21970.1); similar to Os04g0413900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052750.1); similar to Os01g0862600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044884.1); similar to hypothetical protein LOC_Os10g27350 [Oryza sativa (japonica cultivar-group)] (GB:AAP53748.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 1.07716999107259 12.9197540601002 7.82927512130787e-07 0.00562376831963544 11.2754087896462 12.7907025130388 1.07716999107259 0.0705883239901475
AT4G29210_at 6.91436352012687 7.14271752962513 7.69622847282101 7.68771734673217 7.06979876590786 7.37507592635046 5.55912691737744 5.35360381824025 4.67694539913966 5.06445376043507 5.64737728641103 5.38008736619607 6.11430932254981 5.7575697086332 5.52400468804697 5.65729855652128 6.24978534391823 6.13253733712169 4.78689736555348 0.226461538731898 0.227297605391416 0.230075809207516 0.229424325456194 0.227027217124084 0.228461548786905 0.231502866361148 0.237105863763615 0.239869318103606 0.229193346981061 0.224421581676503 0.224421581676503 0.227736417286103 0.238811231310081 0.236892145414264 0.226240954905631 0.2281520227802 0.23497775863051 0.232997996720022 4 4|0 +|/ 14402544 14403266 14402836.1 14400926 14403525 + gene protein_coding_gene FALSE TRUE AT4G29210.1|AT4G29210.2 GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3); gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase|GGT3 (GAMMA-GLUTAMYL TRANSPEPTIDASE 3); gamma-glutamyltransferase The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in the vacuole and is most active in roots. The encoded enzyme is involved in the initial degradation of glutathione conjugates in this cell compartment. It is also induced by xenobiotics and contributes to xenobiotics metabolism. similar to gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase [Arabidopsis thaliana] (TAIR:AT4G39650.1); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAD22536.1); contains InterPro domain Gamma-glutamyltranspeptidase; (InterPro:IPR000101) 1.08992893720458 12.7965092158311 8.45583174800907e-07 0.00607297836142012 11.2392071988277 12.1751473919231 1.08992893720458 0.0749652114058754
AT3G01290_at 11.0127176140012 11.0683267251034 11.1750993108515 11.2381872263321 10.7472256012620 10.4706653575920 6.22268087406265 6.05616573915743 9.62446441812142 6.93338534916375 8.00392791500229 7.37759892369534 6.43027315820925 8.05929195690199 6.83358702770551 6.89199284454181 6.6755661138961 8.04211940857779 6.24668646901942 0.232343467631698 0.229840508603511 0.23462435586653 0.231966005350396 0.231865807149821 0.231253570352672 0.236538427308493 0.234921784767152 0.236887205959826 0.236412578783400 0.227792864491383 0.228958466425260 0.227792864491383 0.227792864491383 0.230736549176372 0.229822637518467 0.228279028706836 0.228305401920347 0.243159166299864 3 3|0 -|/ 88294 89003 88553.111 88061 89429 - gene protein_coding_gene FALSE TRUE AT3G01290.1 band 7 family protein similar to band 7 family protein [Arabidopsis thaliana] (TAIR:AT5G62740.1); similar to hypersensitive-induced reaction protein [Capsicum annuum] (GB:AAS98165.1); similar to Os10g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064791.1); contains InterPro domain Stomatin; (InterPro:IPR001972); contains InterPro domain Band 7 protein; (InterPro:IPR001107) 1.00280211286315 12.7712399099932 8.5910819341487e-07 0.00616925593691218 11.2316983365837 17.1942869297125 1.00280211286315 0.0577300908989842
AT1G74560_at 7.6394733732648 7.47405076250732 7.13212511666284 7.32787722538585 6.69070065075581 6.88797672054953 8.49102543959449 8.55011649187743 5.30190467484322 6.81093343070513 4.50168675682874 4.93631466907314 5.30503357153988 4.80197921011591 5.88944164564325 4.5316326335669 6.69679329386338 4.97822627300736 6.40158780348165 0.222218198520603 0.213521627189907 0.21557391754735 0.220049963234434 0.215804556751996 0.213521627189907 0.214213386950614 0.218251023532255 0.229040488026655 0.222486697765938 0.216348420819813 0.226946988424581 0.223631052739496 0.227355781702682 0.214256866565535 0.217918973861568 0.229184057288768 0.217067392723780 0.227705976920279 1 1|0 -|/ 28021817 28022892 28022456.556 28021245 28023710 - gene protein_coding_gene FALSE TRUE AT1G74560.1|AT1G74560.2|AT1G74560.3 NRP1 (NAP1-RELATED PROTEIN 1); DNA binding / chromatin binding / histone binding|NRP1 (NAP1-RELATED PROTEIN 1); DNA binding|NRP1 (NAP1-RELATED PROTEIN 1) Double nrp1-1 nrp2-1 mutants show arrest of cell cycle progression at G2/M and disordered cellular organization occurred in root tips. Localize in the nucleus and can form homomeric and heteromeric protein complexes with NRP2. Bind histones Histone2A and Histone2B and associate with chromatin in vivo. similar to NRP2 (NAP1-RELATED PROTEIN 2), DNA binding / chromatin binding / histone binding [Arabidopsis thaliana] (TAIR:AT1G18800.1); similar to Os02g0576700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047218.1); similar to nucleosome/chromatin assembly factor A [Zea mays] (GB:AAK67146.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.99766669238884 -12.7530108510507 8.6901460134791e-07 0.006239524837678 11.226263076671 13.2124751274322 -0.99766669238884 0.0568960807203581
AT3G03770_at 4.04927014116183 4.1454089863935 4.00475480338569 3.84753830274266 3.579714505971 3.30711045179883 7.43570165020416 7.12519794972311 4.94180839160804 7.00383289654675 5.92135173452823 6.17215518222618 5.47578272829223 5.20171912714976 5.70646254424171 6.43650974385053 5.39292861438437 5.72659612807935 5.92803295350114 0.250951095328366 0.247892218610681 0.246915038290972 0.246915038290972 0.246915038290972 0.250954035141863 0.254328169454261 0.249651474999729 0.267890185679356 0.247713551433428 0.248929303512082 0.251504632956925 0.251605965597567 0.259185919005470 0.253676200699947 0.249111318602856 0.258891569925858 0.251788580959434 0.259405324001443 3 3|0 -|/ 945460 946279 945774.5 945146 949045 - gene protein_coding_gene FALSE TRUE AT3G03770.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G14210.1); similar to putative brassinosteroid LRR receptor kinase protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07439.1); similar to transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAQ01159.1); similar to Protein kinase [Medicago truncatula] (GB:ABD28527.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -1.10390917721869 -12.7489443718736 8.71241803207673e-07 0.00625464490522789 11.2250484827995 10.5428769185373 -1.10390917721869 0.0782936525604936
AT3G13950_at 6.92125042974238 7.21114420674773 9.51934750409208 9.60210842563365 7.54794838426134 6.72440565744117 2.31848588276485 2.50464547750991 3.27842455903655 2.97205854540574 2.40367376101520 2.42427399105479 2.74162443226444 3.00173445567677 2.22089063628439 3.16115260051544 2.88394791591744 2.89614003329267 3.03995988553681 0.368276187475536 0.376516877136811 0.362288064915409 0.372828938919954 0.365636699433106 0.371422515090317 0.339295108665455 0.338977742101942 0.332854492140863 0.332854492140863 0.335806925214141 0.338295446096558 0.334537427089440 0.332854492140863 0.338627447776483 0.332854492140863 0.341284996398016 0.332854492140863 0.338094577983823 3 3 + 4604165 4604496 4604336.091 4604156 4605432 + gene protein_coding_gene FALSE TRUE AT3G13950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13266.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80572.1) 1.61471819596272 12.7488551967993 8.71290715374618e-07 0.00625464490522789 11.2250218389445 9.45041402514697 1.61471819596272 0.155148673501581
AT2G46680_at 7.30312345112499 7.79069905803847 9.78735852011069 9.92462339443888 9.87826967451942 9.23114935041943 8.59614842436642 8.4405573033327 3.47836301957099 5.03565596805958 3.91245142181081 4.77127141598088 6.10916958375043 4.89155463088118 3.90899673152085 5.82492902048735 8.57979757723195 5.7772676158364 3.69157860616658 0.246039292416896 0.239624774282579 0.239603753646604 0.241663880193539 0.244874294046011 0.239581041513492 0.242174358464361 0.239577012886562 0.239577012886562 0.240326231334299 0.24520688294089 0.243437316873859 0.241789889837048 0.239577012886562 0.247962233864597 0.239577012886562 0.246234949626913 0.242370172338235 0.241399508849685 2 2 - 19172847 19173630 19173240.273 19172473 19174019 - gene protein_coding_gene FALSE TRUE AT2G46680.1|AT2G46680.2 ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7); transcription factor|ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7) encodes a putative transcription factor that contains a homeodomain closely linked to a leucine zipper motif. Transcript is detected in all tissues examined. Is transcriptionally regulated in an ABA-dependent manner and may act in a signal transduction pathway which mediates a drought response. Identical to Homeobox-leucine zipper protein ATHB-7 (Homeodomain transcription factor ATHB-7) (HD-ZIP protein ATHB-7) (ATHB-7) [Arabidopsis Thaliana] (GB:P46897;GB:Q9SLF9); similar to ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G61890.1); similar to Leucine zipper, homeobox-associated; Homeodomain-related [Medicago truncatula] (GB:ABE91214.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 1.53805769703911 12.7485827170487 8.71440188361016e-07 0.00625464490522789 11.2249404247572 13.6392222875205 1.53805769703911 0.144740848546489
AT2G30010_at 5.65263836024408 6.12417466178945 2.44226855002694 2.58791064159446 3.14204059202600 3.01023617507376 3.99087791102844 4.41733420922132 7.15720839115285 6.46090908381225 7.63613987059498 7.9411544520421 6.46957655058861 6.71668696976521 7.84489444630943 7.49112777391418 3.53075413246826 6.18219105927438 7.7732285179547 0.316367789537539 0.316367789537539 0.362952921315925 0.344057832882239 0.334160916862586 0.330435937556225 0.317891136896681 0.325959007043312 0.32409996842074 0.316367789537539 0.316367789537539 0.316367789537539 0.31668241793948 0.319386934664752 0.316367789537539 0.316367789537539 0.33904627246575 0.316367789537539 0.316367789537539 2 2 + 12814749 12816254 12815591.364 12812801 12816463 + gene protein_coding_gene FALSE TRUE AT2G30010.1 similar to PMR5 (POWDERY MILDEW RESISTANT 5) [Arabidopsis thaliana] (TAIR:AT5G58600.1); similar to unknown [Pisum sativum] (GB:ABA29157.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); similar to Os03g0290900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049797.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.32726265166374 -12.7166615259625 8.89150294985286e-07 0.00638054251681441 11.2153786482659 10.8494422982137 -1.32726265166374 0.115155556394780
AT2G30150_at 5.48237553774139 5.98786591239016 3.74418093634739 3.92030719346257 4.33282786969205 4.05754270738519 6.97555231013552 7.55805389892016 5.44768476351625 6.9146012798031 6.03427062127353 6.3041584465179 5.9079580675439 5.91444962944651 6.30209328093239 6.45772542447378 4.98793105634005 4.95043964964417 6.9403611864149 0.217520862954888 0.214936863442537 0.215838783126903 0.214678937053131 0.21540691767614 0.220009056935635 0.228614675783533 0.227653486627748 0.217521765566762 0.218156836896418 0.215747407518188 0.21710269894771 0.215109047039249 0.216457888757693 0.219079293785635 0.215446056374368 0.219447441953806 0.220906304083774 0.217957744613898 2 2 + 12882666 12883152 12882955.455 12881783 12883199 + gene protein_coding_gene FALSE TRUE AT2G30150.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30140.1); similar to Os01g0805400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044560.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); similar to Os05g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055920.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.53204235464911 -12.6857644154955 9.06674717201704e-07 0.00650539109592222 11.2060780287974 11.4031353033924 -1.53204235464911 0.144956499280777
AT4G04330_at 11.2138450098643 10.9402694812183 10.9714520832501 10.8319035662046 11.5671679309037 11.3343949247154 9.79987925522225 9.80851139902786 9.26786721396691 9.43330292736922 10.6428986662134 10.5061229386991 10.7362543119207 11.0359602702664 10.5473397654937 10.0779505338044 10.6141533556216 10.4890373522431 9.02640051111593 0.107469898302285 0.102711252479895 0.111374202088903 0.106367547588591 0.105639117782669 0.107496326381165 0.108265311672087 0.11111949732199 0.118370517183851 0.122128847082288 0.105430976011484 0.102111218921690 0.102111218921690 0.108286771894399 0.103044215959445 0.104231583359687 0.109331602546139 0.102111218921690 0.117655347478841 4 0|4 /|- 2116729 2118264 2117665.625 2116551 2118595 - gene protein_coding_gene FALSE TRUE AT4G04330.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56420.1); similar to Os08g0425200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061837.1) 1.03714721920036 12.6733443606001 9.1382730059476e-07 0.00655579705446681 11.2023266557807 20.7202970563509 1.03714721920036 0.0667046929024839
AT1G78570_at 9.20158903438035 9.38862873380222 8.85502900939578 8.64456922065605 7.71604417923354 7.58759609822802 9.93002989101427 10.0655416053341 8.79201274262734 9.15429192454645 8.02916824485632 8.87313335193836 8.52311964485811 8.0975851491882 7.82003821540363 8.03742450053737 8.15556213037353 8.96390797773583 8.643500170512 0.167139053297423 0.170848517243882 0.182365252074074 0.188134869467899 0.184720068821244 0.178614247606601 0.172600358874729 0.171965877780958 0.179031408500994 0.167498035554306 0.174601912904493 0.172067793625196 0.173124704132129 0.180186836857259 0.178588262538217 0.170309811520218 0.173551952783246 0.170382609781656 0.170014832029918 1 1|0 +|/ 29556416 29557038 29556711.1 29554542 29557331 + gene protein_coding_gene FALSE TRUE AT1G78570.1 RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1); UDP-glucose 4,6-dehydratase/ catalytic Encodes a UDP-L-Rhamnose synthase involved in the biosynthesis of rhamnose, a major monosaccharide component of pectin. Catalyzes the conversion of UDP-D-Glc to UDP-L-Rha. The dehydrogenase domain of RHM1 was shown to catalyze the conversion of UDP-D-Glc to the reaction intermediate UDP-4-keto-6-deoxy-D-Glc using recombinant protein assay but the activity of the full-length protein was not determined as it could not be expressed in E. coli. Identical to Probable rhamnose biosynthetic enzyme 1 (EC 4.2.1.-) (EC 1.1.1.-) (RHM1) [Arabidopsis Thaliana] (GB:Q9SYM5); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM3 (RHAMNOSE BIOSYNTHESIS 3), catalytic [Arabidopsis thaliana] (TAIR:AT3G14790.1); similar to UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase (ISS) [Ostreococcus tauri] (GB:CAL58329.1); similar to rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95280.1); similar to Os03g0278200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049724.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-glucose 4,6-dehydratase; (InterPro:IPR005888) -0.998206783310791 -12.6709550606638 9.1521046788724e-07 0.00656480468615517 11.2016041502016 17.5115088120506 -0.998206783310791 0.0584657200084131
AT3G60980_at 6.93614386431718 7.30812743795265 6.81807404595176 6.98113838681779 8.1193582503829 7.94144125335518 6.54913172372876 6.6466301933054 4.43286370128853 5.85578774386406 6.31463894823598 6.75967598343759 7.46703008124451 7.1942445578831 6.41008165153585 6.58967102243414 7.23291319950079 6.33670377948839 5.29895712090267 0.218676033488517 0.19869095659946 0.200631077239403 0.200985775514265 0.205423717246481 0.207092318818970 0.202035486213599 0.200259875674935 0.217285679016017 0.207619009319578 0.196420857271888 0.196100224552969 0.202678567143794 0.198005119271637 0.202048143738077 0.198268457784787 0.206150685932710 0.202318950826179 0.203559897792728 3 3 - 22576416 22576948 22576746.818 22576284 22577720 - gene protein_coding_gene FALSE TRUE AT3G60980.1 pentatricopeptide (PPR) repeat-containing protein similar to GRP23 (GLUTAMINE-RICH PROTEIN23), binding [Arabidopsis thaliana] (TAIR:AT1G10270.1); similar to ACT11D09.4 [Cucumis melo] (GB:AAS80150.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 1.09862253012627 12.6705841353898 9.15425405739744e-07 0.00656543100996545 11.2014919610446 13.1545003569707 1.09862253012627 0.0785679928594767
AT4G01460_at 6.28407101795878 7.18591150954952 2.9117373398041 3.53043621391894 5.23547733340778 4.81262203363804 6.95703842857777 7.25381220635393 7.05678544861389 6.84192995182385 6.39743040128207 7.88241578881578 5.87725126286501 5.61452103847437 6.89118007847945 6.15968672028656 4.13028616531399 5.55169798586592 8.020017978397 0.233037793280101 0.233668707385727 0.24962160084609 0.237866449427939 0.230199140747491 0.235580878042269 0.230199140747491 0.235367747530316 0.247157993682158 0.234891046827324 0.233744117083102 0.23622965202657 0.230199140747491 0.236393923552344 0.232336176310746 0.230199140747491 0.246737160683458 0.237499035886972 0.230199140747491 4 4|0 +|/ 621717 622632 622147.7 620759 622943 + gene protein_coding_gene FALSE TRUE AT4G01460.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G61950.1); similar to Os10g0376900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064473.1); similar to helix-loop-helix DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19748.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -2.02041291992824 -12.6663211196234 9.17899709334297e-07 0.00658225881563624 11.2002021113503 12.2060398302933 -2.02041291992824 0.209316454883625
AT2G12550_at 7.40283392356638 7.02572362203014 7.9159114555383 7.8332484364526 7.36815940683833 7.22260686637374 5.47462649514651 5.18648391545339 4.79293502576353 4.70862028482444 5.55558521163898 6.01049907342309 5.77165970873313 5.89572225991394 5.6503364260241 5.84957500168249 5.86394464717666 5.73313573165418 4.9495474743736 0.293386496645557 0.290554850257559 0.294978551437312 0.297075083570108 0.299190377205181 0.29440791078146 0.299266767765206 0.287480738268439 0.287047039651199 0.304844364043081 0.289943913560924 0.288117816779117 0.284964770760058 0.289216243635528 0.281700190621349 0.288438141980621 0.29140276717126 0.288718030180321 0.28339017723973 2 2 + 5124897 5125526 5125210 5121950 5125829 + gene protein_coding_gene FALSE TRUE AT2G12550.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to H0413E07.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86152.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 1.14341877406430 12.6344457791184 9.36638305794686e-07 0.0067156966525479 11.1905303012267 12.2328700247673 1.14341877406430 0.0870891543451082
AT4G39260_at 11.4118454968752 11.1623241450522 11.5907088667526 11.4222665139227 12.0905266672456 11.7112642694292 9.81062800072866 9.23077020958618 9.37544554062984 9.37949618544002 10.9111107168296 11.1070931512178 10.9697068869881 11.0786263262149 11.1887127424165 10.8106008565629 11.0132738686705 10.5651704783422 9.46960021600715 0.0968478169442535 0.0964550224966097 0.098566062409704 0.0984758483687014 0.097484932065268 0.0976794876028519 0.102019098106676 0.103059023995307 0.107440105738 0.104509096333495 0.0957928476391458 0.0953994891986244 0.0984666330946754 0.0990480259067752 0.0962038869254353 0.0971585295083219 0.0989196764994848 0.0986134906125163 0.0975953034570976 4 4 - 18274238 18274922 18274531.273 18273893 18275073 - gene protein_coding_gene FALSE TRUE AT4G39260.1|AT4G39260.2|AT4G39260.3|AT4G39260.4 ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8); RNA binding Encodes a glycine-rich protein with RNA binding domain at the N-terminus. Protein is structurally similar to proteins induced by stress in other plants. Gene expression is induced by cold. Transcript undergoes circadian oscillations that is depressed by overexpression of AtGRP7. Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to Glycine-rich RNA-binding protein GRP2A (GB:P49311); similar to Glycine-rich RNA-binding protein 10 (GB:Q05966); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to Glycine-rich RNA-binding protein GRP1A (GB:P49310); similar to Glycine-rich RNA-binding protein (GB:Q03878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.2); similar to Glycine-rich RNA-binding protein 10 (GB:Q05966); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 8 (Protein CCR1) (GRP8) [Arabidopsis Thaliana] (GB:Q03251;GB:Q94CB0); similar to ATGRP7 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2), RNA binding / double-stranded DNA binding / single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT2G21660.1); similar to Glycine-rich RNA-binding protein 10 (GB:Q05966); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 1.42357792366164 12.6233560053136 9.43257230348714e-07 0.00676221108436993 11.1871540194176 21.2356505340812 1.42357792366164 0.130734610005553
AT1G23140_at 7.36497127746583 7.48841724098084 5.598382740432 5.9643714867114 6.17959297655704 5.68492999063379 6.2263540966779 5.79637616252728 5.91025665044344 5.64312999992233 3.42668708319267 3.53757912830115 4.07133484915240 3.76646344113371 2.72433413680201 3.60373931911055 3.97158113051382 3.59603590518884 5.19641762742159 0.242003674533235 0.256862047959810 0.243680018274327 0.258427886828409 0.247178328833155 0.254365332696318 0.246907014762757 0.248870088526177 0.261242862496366 0.25717262852177 0.244728273267757 0.245491494659198 0.249045526634401 0.250653544423539 0.253182104589083 0.244042466149060 0.255315430946839 0.242003674533235 0.245953536799082 1 1 - 8202360 8203132 8202758.364 8202250 8203204 - gene protein_coding_gene FALSE TRUE AT1G23140.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70810.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -1.4291295571254 -12.6157647247144 9.47818105560466e-07 0.00679396018065742 11.1848394635455 10.8731682298834 -1.4291295571254 0.131653450953493
AT3G12610_at 7.22692068465374 7.8234753550959 3.54176765664347 3.60534481092580 6.24498455298851 6.25491240179004 7.89279037882412 8.08688980236647 7.58972549139599 7.54463525224499 8.77901404617336 8.91113561015958 8.24976665423373 8.12777742628307 9.157847464723 7.8890234714161 6.11807303770552 7.95516752251121 8.42141275375608 0.197707637435093 0.198421390832853 0.227603032986361 0.213066269240046 0.206981584479455 0.216053986607546 0.197707637435093 0.207945504186052 0.223154851750595 0.204149873513528 0.198531465481634 0.200622708904147 0.197707637435093 0.197943954418979 0.213229081133203 0.206464348690611 0.215735918071898 0.203188270657507 0.200178269354747 3 3 - 4006715 4007231 4006966.727 4006406 4007814 - gene protein_coding_gene FALSE TRUE AT3G12610.1 DRT100 (DNA-DAMAGE REPAIR/TOLERATION 100); protein binding Plays role in DNA-damage repair/toleration. Partially complements RecA- phenotypes. Identical to DNA-damage-repair/toleration protein DRT100 precursor (DRT100) [Arabidopsis Thaliana] (GB:Q00874;GB:Q9LHK0); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G20820.1); similar to leucine rich repeat protein [Cicer arietinum] (GB:CAE76632.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.27460777231488 -12.5895321852636 9.63768790599124e-07 0.00690733092222392 11.1768199779738 14.3348357820525 -1.27460777231488 0.109133254202961
AT1G75750_at 10.5792908915587 10.6768261972660 11.5698557646734 11.7374472091378 12.0454924276228 11.8113976365768 10.4711577315026 10.5910513126647 11.0647226374139 10.8987142806144 12.4172651310761 11.5955183862143 11.6299178543213 11.3060764025909 10.9774009327433 11.2916585488979 11.2497667106859 11.9106886361606 10.4259310458254 0.0647423309446503 0.0631944669871895 0.0652504149397434 0.0665301919363256 0.0637924378827738 0.0660951115593822 0.0646129786111288 0.0646312183414195 0.0684949813263852 0.0634671137383903 0.064915310573225 0.062573654476363 0.0632892199031808 0.0655726332559472 0.0644264913790856 0.0627287415956892 0.0676967294749436 0.0672754670965766 0.0647992613516312 1 1|0 -|/ 28445512 28445912 28445619.125 28445202 28446028 - gene protein_coding_gene FALSE TRUE AT1G75750.1 GASA1 (GAST1 PROTEIN HOMOLOG 1) GA-responsive GAST1 protein homolog regulated by BR and GA antagonistically. Possibly involved in cell elongation based on expression data Identical to Gibberellin-regulated protein 1 precursor (GASA1) [Arabidopsis Thaliana] (GB:P46689;GB:Q8W114;GB:Q9LR14); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18420.1); similar to GAST1 protein homolog (GB:AAB06310.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.981148656819876 12.5611731748066 9.81349508006226e-07 0.00703235057437261 11.1681131511793 22.3571861780191 0.981148656819876 0.0565480761151481
AT3G51895_at 8.47042340537169 8.8556215460965 11.0079165301187 10.9820655562878 10.6737285528058 10.5014669938367 11.1566698850213 11.0213539604499 9.05340807785653 9.56238974849978 10.4005910360908 9.99085029775533 10.8404090333458 10.5985174015543 10.0005907981962 10.8126398135569 11.2916769460096 10.6976766952393 9.45535298119915 0.109168323067505 0.08987279633276 0.0883880360623331 0.0886542920054908 0.0885869817365721 0.0912820220305916 0.089028269430353 0.0875943448934087 0.0993850787222967 0.0921567604772874 0.086635662926724 0.086635662926724 0.0883275459245538 0.0938221179659458 0.090670839087761 0.086635662926724 0.0896385980525516 0.08756085836531 0.086635662926724 3 3|0 -|/ 19262532 19263436 19263115.75 19262265 19266738 - gene protein_coding_gene FALSE TRUE AT3G51895.1 SULTR3;1 (SULFATE TRANSPORTER 1); sulfate transporter Encodes a sulfate transporter. Identical to Sulfate transporter 3.1 (AST12) (AtST1) (SULTR3;1) [Arabidopsis Thaliana] (GB:Q9SV13;GB:O23250;GB:O64435;GB:O65025); similar to SULTR3,4 (SULTR3,4), sulfate transporter [Arabidopsis thaliana] (TAIR:AT3G15990.1); similar to AST91 (SULFATE TRANSPORTER 91), sulfate transporter [Arabidopsis thaliana] (TAIR:AT1G23090.1); similar to SULTR3,2 (SULFATE TRANSPORTER 3,2), sulfate transporter [Arabidopsis thaliana] (TAIR:AT4G02700.1); similar to Sulphate transporter [Medicago truncatula] (GB:ABE80289.1); similar to Putative sulfate transporter ATST1 [Oryza sativa (japonica cultivar-group)] (GB:AAN06871.1); similar to sulphate transporter [Brassica napus] (GB:CAE46442.1); contains InterPro domain Anti-sigma factor antagonist; (InterPro:IPR003658); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) 1.06867297128039 12.4328574162119 1.06548877301359e-06 0.00763422705864236 11.1282279474764 20.3017404397004 1.06867297128039 0.0768156738051232
AT2G25840_at 6.39517151666467 6.22263091680984 5.34044193643078 5.27231376051137 5.56816503463616 5.33267585634617 7.0255769931099 6.79661696055315 6.78008510564783 6.82983531172662 5.81888330117218 6.65622820246188 5.68349535746601 5.91648958740935 6.99796599744402 6.0709484947968 5.45404565758359 5.90562504413671 6.94518494871837 0.210436818452846 0.225577906188800 0.210436818452846 0.212398192025485 0.211729199843029 0.221926595414375 0.211341159488845 0.224144037473302 0.233339611421526 0.212850371488709 0.219227579302117 0.218616942824104 0.212863354503610 0.217374231253718 0.225389756701254 0.210436818452846 0.226872682686415 0.2178650628105 0.210436818452846 2 2|0 +|/ 11030886 11032167 11031531 11028955 11032448 + gene protein_coding_gene FALSE TRUE AT2G25840.1|AT2G25840.2|AT2G25840.3 OVA4 (OVULE ABORTION 4); ATP binding / aminoacyl-tRNA ligase similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305)|similar to putative tryptophanyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD87908.1); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -1.01017076659603 -12.4271594490525 1.06940702419045e-06 0.00766123192130035 11.1264380278635 12.4515301188860 -1.01017076659603 0.0652784480680254
AT1G79440_at 8.46318582863986 8.4177847502486 8.41884668463024 8.05713056901883 9.44383634145266 8.59226017772842 6.74005525725505 5.89504225037033 4.56742347481407 5.33244022484242 8.58284581859112 8.28004042189925 7.96602952074628 8.41680422140475 7.90353118783682 6.61832809511843 7.25093155846356 7.61533886898561 5.11611021512854 0.214533708732321 0.213454991789343 0.216573381546439 0.215476918552998 0.218521040243657 0.223171451112740 0.218592062918157 0.223507461412625 0.230661817280909 0.222503054745193 0.217083533032327 0.214281614721506 0.213454991789343 0.221671078940554 0.220493495490674 0.214203295023567 0.226253732260839 0.213454991789343 0.226917489891043 1 1|0 -|/ 29887768 29888989 29888364.667 29887103 29892303 - gene protein_coding_gene FALSE TRUE AT1G79440.1 ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE); 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase Encodes a mitochondrial succinic semialdehyde dehydrogenase (SSADH). Nomenclature according to Kirch, et al (2004). Identical to Succinate semialdehyde dehydrogenase, mitochondrial precursor (EC 1.2.1.24) (At-SSADH1) (NAD(+)-dependent succinic semialdehyde dehydrogenase) (Aldehyde dehydrogenase 5F1) (ALDH5F1) [Arabidopsis Thaliana] (GB:Q9SAK4;GB:Q9SEK4); similar to ALDH2B4 (ALDEHYDE DEHYDROGENASE 2), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G48000.1); similar to putative succinic semialdehyde dehydrogenase [Azoarcus anaerobius] (GB:ABK58629.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Succinic semialdehyde dehydrogenase; (InterPro:IPR010102); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 2.03645399747406 12.3934050364619 1.09295007565967e-06 0.00782880139195022 11.1158015452158 14.4207956573642 2.03645399747406 0.216983826156305
AT1G04990_at 5.93112503180028 5.47277831832562 6.12417702819093 6.02732706223458 5.57736423540485 5.20994572832081 4.06369778793951 3.81145590235203 3.28357232244503 3.82478256702284 5.28260060838963 5.15502183488117 4.54585212026542 5.21349186612415 5.49861846370891 4.79054390421795 5.01214017205571 4.84287051300332 3.13054321076819 0.242205202767924 0.250172418743138 0.248524394038158 0.250033793496453 0.248429643277907 0.247148845066042 0.239567423289479 0.242303298599330 0.255567690419619 0.259080000633559 0.241106044194316 0.23658014195485 0.245568918446471 0.239189319373726 0.238621180564899 0.247634043860654 0.23658014195485 0.240715441721331 0.237272815502477 1 0|1 /|- 1419367 1419978 1419719.444 1419079 1421788 - gene protein_coding_gene FALSE TRUE AT1G04990.1|AT1G04990.2 zinc finger (CCCH-type) family protein Identical to Zinc finger CCCH domain-containing protein ZFN-like 4 [Arabidopsis Thaliana] (GB:Q94AD9;GB:Q9MAU8); similar to ZFN2 (ZINC FINGER PROTEIN 2), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G32930.1); similar to Zinc finger, CCCH-type; Sugar transporter superfamily [Medicago truncatula] (GB:ABD28369.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 1.2723078276761 12.3922457727692 1.09376882546433e-06 0.00783357232797553 11.1154352363654 9.50503812119248 1.2723078276761 0.111896127768619
AT1G35190_at 7.30984124183596 7.4852438677929 6.09344979118358 6.21384696113135 7.34936175167866 7.2529629870495 6.96960240334258 6.75987061586387 5.78369648967292 6.59497942878951 4.20455678998424 4.32494113898001 5.43413500660741 5.47195918354519 3.95295249555844 4.42262948684305 5.20922506234053 5.15726925913672 6.47204722416747 0.230322904550319 0.231916076360252 0.234368164224285 0.237752594363659 0.231255878622291 0.243370922419850 0.230322904550319 0.233455944621875 0.232717773899036 0.231163520340721 0.234393580533504 0.231751010795746 0.239770073462892 0.242420024870315 0.240205493507011 0.232841536233902 0.244046143563416 0.230322904550319 0.230558886399985 1 1|0 +|/ 12891420 12892578 12892153.889 12890401 12892852 + gene protein_coding_gene FALSE TRUE AT1G35190.1|AT1G35190.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G46480.1); similar to Os01g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042255.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81241.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.95754999372512 -12.3787511910194 1.10335000833033e-06 0.00790108940965349 11.1111662196725 12.4571639193603 -0.95754999372512 0.0543242003744536
AT4G33150_at 5.29702605606145 5.36588563690491 6.64958388362734 6.38830921127738 6.92078893397135 7.13532762489759 3.67110423549076 3.23136352153049 3.36269415857852 4.3208493191552 3.73815303022780 3.15001886316701 3.72976013699065 3.43804369194773 3.36377299514654 3.93416741562917 4.80897714232848 4.15113054340733 3.77139245954887 0.220002339285461 0.230601008476219 0.231450628505146 0.235689214799175 0.218718463077092 0.220926114775067 0.21783523234818 0.228288290798269 0.220991117819108 0.224009135446516 0.21783523234818 0.219612905708621 0.218418899187150 0.221936959042218 0.220007735967156 0.21849570857512 0.232647352782037 0.221017828522756 0.222300977618743 4 4|0 -|/ 15985653 15986421 15986030.889 15985192 15991541 - gene protein_coding_gene FALSE TRUE AT4G33150.1|AT4G33150.2 LKR (SACCHAROPINE DEHYDROGENASE) Identical to Alpha-aminoadipic semialdehyde synthase (LKR/SDH) (cAt-LKR/SDH) [Includes: Lysine ketoglutarate reductase (EC 1.5.1.8) (LKR); Saccharopine dehydrogenase (EC 1.5.1.9) (SDH) (cAt-SDH)] (LKR/SDH) [Arabidopsis Thaliana] (GB:Q9SMZ4;GB:O04155;GB:O04156;GB:O04884;GB:Q7DM71;GB:Q947M5;GB:Q94BT4); similar to bifunctional lysine-ketoglutarate reductase/saccharopine dehydrogenase [Gossypium hirsutum] (GB:AAN14410.1); similar to lysine ketoglutarate reductase/saccharopine dehydrogenase biofunctional enzyme [Zizania latifolia] (GB:ABF18958.1); similar to lysine ketoglutarate reductase/saccharopine dehydrogenase [Zea mays] (GB:AAG21985.1); contains InterPro domain Alanine dehydrogenase/PNT, C-terminal; (InterPro:IPR007698); contains InterPro domain Saccharopine dehydrogenase; (InterPro:IPR005097); contains InterPro domain LOR/SDH bifunctional enzyme conserved region; (InterPro:IPR007545); contains InterPro domain Alanine dehydrogenase/PNT, N-terminal; (InterPro:IPR007886) 1.17654927460395 12.3786633228209 1.10341270033315e-06 0.00790108940965349 11.1111383926644 9.38620611619505 1.17654927460395 0.0967257678471417
AT3G19260_at 7.01266755785129 7.31283602323262 7.6957629314235 7.77929546375627 7.6319554215929 7.318349461961 5.12873932038891 5.17975639055844 5.18169458190426 4.68026481034198 5.18327278353373 5.78176361481045 5.44138935276211 5.51807286820628 5.61327543788846 4.97549852727935 5.69415572039878 5.7041047433007 4.56991383283225 0.231838377033127 0.235100503247743 0.238674099002994 0.240645191645342 0.235182339027978 0.240744543395889 0.237241886837206 0.240726596055061 0.235116878304049 0.235009367577875 0.234859494994882 0.231838377033127 0.235107286064561 0.231838377033127 0.245749263650400 0.235646665252089 0.244148788521434 0.232129533420613 0.234957592768662 3 3|0 -|/ 6669976 6670728 6670379.889 6669152 6671525 - gene protein_coding_gene FALSE TRUE AT3G19260.1 LAG1 HOMOLOG 2 (LONGEVITY ASSURANCE GENE1 HOMOLOG 2) LAG1 homolog 2 Identical to LAG1 longevity assurance homolog 2 (LAG1 homolog 2) (LAG2) [Arabidopsis Thaliana] (GB:Q9LJK3;GB:Q9M6A2); similar to LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT1G13580.2); similar to Os02g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047244.1); similar to ASC1-like protein (Alternaria stem canker resistance-like protein) (GB:Q8W4Y5); similar to Os03g0264000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049639.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Longevity-assurance protein (LAG1); (InterPro:IPR005547) 1.06307910966930 12.3558601086375 1.11981714496496e-06 0.00801677094080418 11.1039037427453 12.0322033410366 1.06307910966930 0.077010342509635
AT2G21540_at 4.33071925880467 4.14462473139487 2.7305167523493 2.7512046562772 2.94595150887718 2.7727169176256 5.9866927745001 6.16168622238422 6.72407033630425 6.04588807069997 8.33395943727976 7.6141588377546 5.72234610414447 7.43701817431421 7.1203983511452 5.36565574679054 4.76654632225013 7.74308889417661 6.15116931431213 0.211859914654648 0.214295251910722 0.221611751869105 0.231198834650676 0.216693206362032 0.225004510282813 0.220461576929885 0.220672020083948 0.227100594831979 0.215891244547002 0.214530016135279 0.214953931646453 0.219050123789234 0.213639414272588 0.220382836651440 0.211859914654648 0.216082723808999 0.215676486725809 0.214116142618999 2 2 - 9228068 9228857 9228513.545 9227629 9231576 - gene protein_coding_gene FALSE TRUE AT2G21540.1|AT2G21540.2 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative|phosphatidylinositol transporter similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G36490.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to SEC14 (secretion 14) [Arabidopsis thaliana] (TAIR:AT4G39180.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85401.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.949989689139414 -12.3229356087696 1.14398385633432e-06 0.00818863644364105 11.0934117844206 10.5129836314037 -0.949989689139414 0.0535329695057732
AT2G18660_at 10.4358473289195 10.4574406184428 11.7122770185518 11.7533634300411 10.4768782335351 9.9632458843882 2.09582502128793 1.8501099251162 6.83090508883491 3.88247354718804 1.68252465226006 2.21831449409678 2.14453539008680 1.93761607412028 2.80182748783784 2.40869073997141 2.66295138314712 2.38214257986518 3.32212589662159 0.258676255425479 0.261235237324627 0.258770643758627 0.251945595743955 0.260127823547445 0.265555817200834 0.253034370105654 0.256762539867133 0.297597654177270 0.268659766395043 0.252512879902859 0.258532847003846 0.265865392740023 0.251945595743955 0.255620819143887 0.25345804745601 0.257280064105249 0.255161490672292 0.264519392768789 2 2|0 -|/ 8098249 8098663 8098421.5 8097740 8098738 - gene protein_coding_gene FALSE TRUE AT2G18660.1 expansin family protein (EXPR3) Identical to Expansin-like B3 precursor (AtEXLB3) (AtEXPR3) (Ath-ExpGamma-1.2) (EXLB3) [Arabidopsis Thaliana] (GB:Q9ZV52); similar to expansin-related [Arabidopsis thaliana] (TAIR:AT4G30380.1); similar to immuno-reactant natriuretic peptide-like protein [Erucastrum strigosum] (GB:AAM18791.1); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132) 1.18397962873956 12.3219530021601 1.14471396136753e-06 0.00819271782150738 11.0930978182741 12.0722868630627 1.18397962873956 0.098860793757815
AT1G73830_at 4.20105337639787 3.70246877976265 3.51076201311178 3.79179717930810 4.90309625054956 4.86285117366222 3.72455918736101 3.56630509067844 5.81380481360766 4.99698596918778 7.95992058959335 7.85629057806297 7.67919869836702 7.95597439140766 7.57326220444416 8.04963890522105 7.82551608144007 6.91818498313714 6.52466678687967 0.289252050110127 0.288421642290839 0.300942936538282 0.302627645863121 0.284798423522427 0.287744060533152 0.290419253279040 0.301750533715082 0.297642845582094 0.302037867408048 0.291162436994067 0.28522590409101 0.292525211495766 0.29420971660103 0.297932205847291 0.287256251036939 0.318410235472725 0.284798423522427 0.287642209126491 1 1 + 27763887 27764978 27764409 27763636 27765108 + gene protein_coding_gene FALSE TRUE AT1G73830.1 BEE3 (BR ENHANCED EXPRESSION 3); DNA binding / transcription factor similar to BEE1 (BR ENHANCED EXPRESSION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G18400.1); similar to putative bZIPtranscription factor protein [Brassica oleracea] (GB:AAW81732.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 1.20864624650436 12.3162184439952 1.14898526416942e-06 0.00822213855039638 11.0912645152422 10.7857287116127 1.20864624650436 0.102997534667490
AT4G18580_at 6.769472043278 6.49322763945962 8.18782145775964 8.20590907415575 8.33340624512732 7.69472541120394 5.33316331728164 5.41487259333359 4.99754707107962 4.91774086015222 5.25104233232183 4.48486132978794 5.45267536281708 5.66994094176018 4.83976598199377 6.22861359816316 6.18453657299839 5.30945449264928 4.72950759167058 0.283799225608219 0.283747190771379 0.295336277557505 0.289510850894233 0.296877676188872 0.289913250657277 0.283747190771379 0.283918552497460 0.292244055083805 0.286776343488355 0.283747190771379 0.288729696309309 0.288004702002757 0.285699041046424 0.290770537934548 0.283747190771379 0.287854999543732 0.283747190771379 0.288651346621112 4 4|0 -|/ 10234911 10235509 10235256.111 10234678 10236056 - gene protein_coding_gene FALSE TRUE AT4G18580.1|AT4G18580.2 unknown protein 1.32439723382538 12.3050750932974 1.15733605564802e-06 0.00828073947816159 11.0876972860397 12.2086796397977 1.32439723382538 0.121289931977979
AT1G67970_at 9.01230214439158 9.51052994377904 9.91433444957766 9.77439405049632 10.0070510150380 9.48236211284903 6.83470561387401 6.51844258784876 5.3136314948219 4.84237719296474 5.5456738237524 5.63814716240622 5.88999364845541 6.48738932338595 5.5100392494191 5.69307571434081 6.4800203817643 5.77138743094227 4.31643183173119 0.209802929487422 0.215290668876886 0.216917267730732 0.212104779545674 0.226929283180211 0.222080310852279 0.220410540274998 0.215752865203668 0.228876958943481 0.216900709323936 0.218487246933597 0.209802929487422 0.209802929487422 0.21212769007672 0.212886630861098 0.209802929487422 0.236367089392316 0.211955355484485 0.209802929487422 1 1 - 25488515 25489062 25488797.727 25488362 25490125 - gene protein_coding_gene FALSE TRUE AT1G67970.1 AT-HSFA8 (Arabidopsis thaliana heat shock transcription factor A8); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-8 (AtHsfA8) (Heat shock factor protein 5) (HSF 5) (Heat shock transcription factor 5) (HSTF 5) (HSFA8) [Arabidopsis Thaliana] (GB:Q9S7U5); similar to HSF1 (ARABIDOPSIS HEAT SHOCK FACTOR 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G17750.1); similar to heat shock factor protein hsf8-related [Glycine max] (GB:AAS15800.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 1.43917966824296 12.2730169944156 1.18173948063536e-06 0.00845416424446537 11.0773995678991 14.2323215805556 1.43917966824296 0.138782395922581
AT2G30420_at 5.31190330831412 6.03127143466467 2.99330992207578 2.98011574854536 3.83581494823430 3.78968226263967 5.96071594044243 6.05856132377919 5.24514868801816 5.69919838887216 5.48668104672357 6.01629412072077 6.21505649816747 6.01373840621005 4.73742777681669 5.65230348346594 4.35242094803886 4.48603130856828 5.94019123622636 0.304100000527957 0.295093057106842 0.296442642600576 0.301283694703042 0.29222120331302 0.309003496211649 0.29222120331302 0.29222120331302 0.310742004558349 0.297468521973754 0.293921986990112 0.29222120331302 0.298318513174739 0.29222120331302 0.29222120331302 0.302952402328723 0.306424143491833 0.30347612064476 0.299225522698995 2 2 - 12968060 12968968 12968589.75 12967961 12969239 - gene protein_coding_gene FALSE TRUE AT2G30420.1 myb family transcription factor similar to TRY (TRIPTYCHON), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G53200.1); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT2G30432.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61200.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.34953376027147 -12.2542202629047 1.19631409058468e-06 0.00855723468995225 11.0713372661099 10.1192586792342 -1.34953376027147 0.125910383848375
AT1G52200_at 9.48057036002974 9.71835393930191 9.29791363692918 9.32613180012136 9.86535825146469 9.72561686891893 4.53311937801167 4.95989574102917 7.3091360647992 6.29214987364404 6.54932467788524 5.85668939225727 6.29672318003568 7.65831942518645 4.24109161555086 6.76792781243898 6.24521294701788 5.987506916395 5.46588034281683 0.269897522313807 0.272858699696801 0.272638281918110 0.274678419563414 0.271448244614581 0.273370278301395 0.27042051994333 0.277494793034054 0.274313852659140 0.278751048469338 0.272228225304808 0.269514238352782 0.271889686720081 0.271996108801739 0.277092152110806 0.269514238352782 0.285032871858742 0.282497319079701 0.271450612626398 1 1|0 -|/ 19445960 19446972 19446626.875 19445737 19447128 - gene protein_coding_gene FALSE TRUE AT1G52200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18470.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABD32291.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 1.11269884342899 12.2339466810072 1.21225850571078e-06 0.00867007283284353 11.0647783366698 14.6414057917755 1.11269884342899 0.0880715655570667
AT4G01430_at 4.80140358657153 5.44098221145334 8.36936077686066 8.50857482429824 8.64452521888355 7.32031976917534 6.52116186052671 6.50858087394873 2.70609957287393 3.16938974492989 5.09272158011636 3.00062002025031 5.11579685124831 4.83348934901716 2.75082778205839 4.23114200619238 7.17294508317219 6.50978583808752 1.9586663678229 0.297237960666800 0.290666685264703 0.299339059095247 0.292389615192552 0.287622515004682 0.289438654003649 0.298650566102647 0.291861388648636 0.313590728668858 0.288852367889407 0.291667040118112 0.287622515004682 0.287622515004682 0.296931565016999 0.295614834644356 0.287622515004682 0.292095092020373 0.287622515004682 0.306541940195244 4 4|0 +|/ 586767 587822 587375.889 585598 588029 + gene protein_coding_gene FALSE TRUE AT4G01430.1|AT4G01430.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G01070.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os02g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045606.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G01070.1); similar to Os06g0107600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056569.1); similar to Os02g0103500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045604.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1) 2.30984692470248 12.2249959402050 1.21937308384637e-06 0.0087197369225854 11.0618758547094 10.7392642863698 2.30984692470248 0.255636342508663
AT2G46620_at 7.72067640939209 7.720715105794 7.97504322801133 8.02287000482633 7.46504455325515 7.59770843359729 4.47365562433231 5.06993110010705 5.42601576109155 5.13971489283316 6.04514334160072 5.73996967144605 5.35921331410246 5.76153113541287 6.43497848491988 5.46283779243012 6.28847628185468 6.49427088889729 4.52585443488028 0.235147789774243 0.238694846988196 0.241962537209477 0.239986692993527 0.242476262198009 0.242994686131509 0.237066859607785 0.237866101336584 0.249689192897326 0.243563274605483 0.239885949153672 0.237200364133795 0.238544365373119 0.235022564972397 0.243628818091067 0.235662431160649 0.238322461946819 0.234960606510762 0.24306002617810 2 2 - 19146229 19146715 19146450.545 19145871 19147817 - gene protein_coding_gene FALSE TRUE AT2G46620.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28580.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE93512.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 1.21834812295709 12.224658727699 1.21964202726877e-06 0.00872044049497167 11.0617664251342 12.4951210457984 1.21834812295709 0.106034865872021
AT1G04710_at 6.97306321167143 6.74737411870772 5.84711816282388 5.7902390946708 6.22813634327963 6.10472360033427 7.64462437523436 7.56134397939244 6.27939295845303 7.24330806260906 5.11985622860311 6.24189577016035 6.24515733436526 6.1269874306746 6.3302697288345 6.18805420217753 6.13658118634794 6.18246207364397 6.49054930572403 0.197700128620168 0.196226934108154 0.200678217803686 0.206365876243757 0.195066065102155 0.206125423030567 0.205391415659068 0.194977512492331 0.205384510847069 0.196723897118949 0.203006231266259 0.204541549937478 0.196002651123064 0.199812221657846 0.204405919965922 0.194968823137115 0.200900547754143 0.201123872795170 0.198449912073398 1 1|0 +|/ 1323558 1324529 1324050.3 1321903 1324779 + gene protein_coding_gene FALSE TRUE AT1G04710.1 acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative Identical to 3-ketoacyl-CoA thiolase 1, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 1) (Acetyl-CoA acyltransferase 1) (Peroxisomal 3-oxoacyl- CoA thiolase 1) (KAT1) [Arabidopsis Thaliana] (GB:Q8LF48;GB:O23014;GB:Q8LPI4); similar to KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT5G48880.3); similar to PED1 (PEROXISOME DEFECTIVE 1), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT2G33150.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase; (InterPro:IPR002155) -0.91936128444274 -12.2126344044604 1.22927530074504e-06 0.00878808912502632 11.0578605492058 12.9833235790708 -0.91936128444274 0.0478135738466197
AT1G01390_at 6.3520864491554 6.46735683951863 5.88587777155499 6.17467367335289 5.83943443460419 5.86993095172399 8.60594904867064 8.53986183973154 4.00554774509698 4.752183681792 3.32134992609302 3.59239894358682 4.6506213521887 4.14980137093985 2.60579694284819 4.8340848778162 5.45913664192204 3.43791909972735 4.30120614609843 0.251718259449730 0.251877619131163 0.254873712541494 0.245399678470701 0.253239741420376 0.264041224869013 0.267883881982218 0.263384944278783 0.25893834341619 0.256892567239591 0.253886049543885 0.254576257282084 0.253548984703136 0.246973610373526 0.257639340375516 0.248333703606106 0.253651501048185 0.246236582604008 0.261426866243792 1 1 - 148322 148878 148638.273 148120 149806 - gene protein_coding_gene FALSE TRUE AT1G01390.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G01070.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.947712441532786 -12.2015665249697 1.23821722288782e-06 0.00885077670920214 11.0542587499666 10.8965802937321 -0.947712441532786 0.0552659470790468
AT3G06770_at 4.58957012217591 5.21398314243638 3.32721190835525 2.81414500387417 3.39064078941312 3.56209663011845 6.91241128511308 6.98865388803737 7.70203593248025 7.2821118935509 8.6313172666123 8.2878178218012 7.41447717776302 8.05582238834536 8.63441137385202 6.732932023541 5.17281342790168 7.13279169264275 8.34859525135073 0.266900145689675 0.260373839268389 0.271960895329906 0.276683037590642 0.271264325447474 0.268915040667519 0.262259477815128 0.263031482399701 0.268040140127494 0.26078528162744 0.268609509006864 0.260286069235399 0.268443621237364 0.263157208756322 0.271079956402808 0.265577139905746 0.276736058996839 0.261834576328249 0.260225325018322 3 3 - 2135172 2135692 2135427.818 2134806 2137234 - gene protein_coding_gene FALSE TRUE AT3G06770.1|AT3G06770.2|AT3G06770.3 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to polygalacturonase [Arabidopsis thaliana] (TAIR:AT5G49215.2); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334)|similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G49215.1); similar to Os11g0658800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068399.1); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -1.46120707786849 -12.1786317407502 1.25697799164017e-06 0.0089836217062523 11.0467749103016 12.2425285573662 -1.46120707786849 0.143576907053620
AT3G51660_at 8.2903118454303 8.96832929381427 9.56165067449314 9.66376611160456 9.43373072141881 8.59485570823885 5.93392216080065 5.92416210038297 6.42960840828314 5.16811366370986 7.10850204978558 7.29163407080423 7.4237302864158 7.74738599663016 6.55736701636757 6.7384863497387 6.44869521167038 6.44088655060826 4.77648149733261 0.292423149842685 0.283484202176222 0.313036799818381 0.301800263251849 0.283999458132073 0.301939733423629 0.286522837794265 0.279463501766055 0.296951164539833 0.283091209459743 0.279463501766055 0.279463501766055 0.279463501766055 0.292677430970120 0.283377153340173 0.280135236884334 0.300477367345294 0.295585755187579 0.293288276692742 3 3|0 -|/ 19175223 19176031 19175494.4 19175042 19176226 - gene protein_coding_gene FALSE TRUE AT3G51660.1 macrophage migration inhibitory factor family protein / MIF family protein similar to macrophage migration inhibitory factor family protein / MIF family protein [Arabidopsis thaliana] (TAIR:AT5G01650.1); similar to Macrophage migration inhibitory factor family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95632.1); contains InterPro domain Macrophage migration inhibitory factor; (InterPro:IPR001398) 1.77291876944625 12.1417859992552 1.28778405993328e-06 0.00920250489228324 11.0346944351252 14.5101679759952 1.77291876944625 0.187502294064134
AT4G02790_at 7.87289871409235 8.0796060454308 6.89820100576038 6.6330963065436 7.10438117863222 7.30328181654481 8.43901059155822 8.18935307881018 8.20105637901508 8.15725778122234 6.54028435034714 7.43721251923892 6.78994801393296 6.80756993845925 8.02368967216629 7.80993039568817 7.34362767948789 6.30848234194474 7.90830376996738 0.155085702844877 0.155284960790435 0.166783975401788 0.1565464665336 0.161765581044978 0.157670183659104 0.158306153276742 0.159510477674623 0.160700490813936 0.163586667085912 0.166151222415402 0.15258346476508 0.168153390688251 0.157550442021035 0.154029912352881 0.153269899815004 0.155635155942930 0.160463298158079 0.158405583674667 4 0|4 /|+ 1248620 1249325 1248950.3 1247386 1249588 + gene protein_coding_gene FALSE TRUE AT4G02790.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G41670.1); similar to Os05g0430400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055624.1); similar to COG1161: Predicted GTPases [Nostoc punctiforme PCC 73102] (GB:ZP_00109854.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) -1.05837828004803 -12.1060753304891 1.31844497706562e-06 0.00942028936113386 11.0229182312188 15.1757114708265 -1.05837828004803 0.0802232519319905
AT1G22650_at 6.09279866132694 5.81159743021751 5.73539100770232 5.68330719106158 4.45893033735645 4.55623269574119 6.25400955162434 6.3111346586819 5.41721718716947 4.7003661687935 4.12889200034686 4.87198601494595 3.61402265554002 4.28159338374496 3.99707486259181 3.90956754627329 4.16240890463147 5.07594348451026 5.19455936262093 0.208093184352808 0.204855768249694 0.208779550604867 0.202759730060388 0.205603060445841 0.210403352653988 0.202759730060388 0.204641523017702 0.208248890784691 0.210308653634888 0.205579346975246 0.203578106022426 0.211266726205727 0.208419344805381 0.217087305415031 0.237752157935882 0.206790151326777 0.205288051575098 0.202759730060388 1 1|0 -|/ 8013722 8014386 8014180.3 8013371 8015980 - gene protein_coding_gene FALSE TRUE AT1G22650.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G72000.1); similar to CINV1 (CYTOSOLIC INVERTASE 1), beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT1G35580.2); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.928890616892753 -12.0662584041169 1.35359313549318e-06 0.00967006935996327 11.0097085685726 10.2925420314312 -0.928890616892753 0.0532035119864614
AT3G47160_at 10.8619901879679 10.8902335443423 10.8398188115196 10.7659706196555 11.6288914603060 11.1443319879814 9.0695496673085 9.25490008864121 9.03349612782128 9.0669127101108 10.0073131148127 9.78090653187904 10.1471153647445 10.0962584119489 9.56644442675895 9.9716389041845 9.8569912090044 9.99651290877858 8.24989669658667 0.121808691110880 0.118125478866390 0.123364001317461 0.118274716231538 0.119430304384816 0.122053083059789 0.128584007795581 0.121841090679019 0.148547859978984 0.122179041067312 0.122162519082744 0.119254786249642 0.118047627331957 0.118514276648934 0.122821181912142 0.117179970120690 0.124828398071283 0.128733065894704 0.130095986860963 3 3|0 -|/ 17371229 17372007 17371562 17370976 17373103 - gene protein_coding_gene FALSE TRUE AT3G47160.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G58787.1); similar to Os04g0679800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054282.1); similar to H0801D08.18 [Oryza sativa (indica cultivar-group)] (GB:CAJ86260.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.11002363932083 12.0355555521978 1.38140836781398e-06 0.00986739997129525 10.9994650740708 19.9126271895587 1.11002363932083 0.0908172514038561
AT2G36470_at 5.57673656953683 5.68214824837264 4.98953217634656 4.72767120149206 6.32266470152515 6.13803091008135 2.84962593391173 3.46345154459568 4.14721405358624 3.67409607603126 5.39790247017533 5.42645388082885 5.01631289499413 5.57420331656995 5.2142265924752 5.00091596838199 4.75351828646363 5.65179987369391 3.63294620279986 0.222221773821388 0.206244852941540 0.207000888554048 0.211475330599370 0.211987473239481 0.214350629839185 0.217311619577665 0.212775151966917 0.206122857666966 0.203661399784665 0.209032186849459 0.202861795012021 0.205084569582381 0.202861795012021 0.208523442411442 0.202861795012021 0.222997623980201 0.21228958482335 0.204532118905541 2 2 - 15306471 15307031 15306845.636 15306441 15308069 - gene protein_coding_gene FALSE TRUE AT2G36470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27770.1); similar to Os11g0150200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065758.1); similar to Os07g0572300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060057.1); similar to H0321H01.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66493.1); contains InterPro domain Protein of unknown function DUF868, plant; (InterPro:IPR008586) 1.29390769478291 12.0267812991066 1.38947384237372e-06 0.00992362218223311 10.9965284427830 9.50498371302625 1.29390769478291 0.12120676375606
AT1G73680_at 6.97706549492541 7.13498406935225 7.56379458781134 7.77734349175525 8.12365181661238 8.05977861667907 6.12668307526704 6.04774995648723 5.20210795573039 5.5611970059452 5.6006906597385 5.20850552941372 5.89782944836078 6.08982065380636 5.139414123513 5.81522404195114 6.98372097120695 5.67978512918936 5.12310124946097 0.209257287591043 0.202904299649116 0.205706795501219 0.208657649101606 0.228808347289465 0.213189969861005 0.207466674282908 0.207909480286547 0.216402142130482 0.207445705942113 0.203772915893403 0.206696272494549 0.203850465433987 0.204140234354183 0.21151136080392 0.204123199847974 0.208151814163903 0.206965971107979 0.206360728304493 1 1|0 -|/ 27707915 27708604 27708220.1 27707605 27711175 - gene protein_coding_gene FALSE TRUE AT1G73680.1 pathogen-responsive alpha-dioxygenase, putative similar to ALPHA-DOX1 (ALPHA-DIOXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G01420.1); similar to TPA: TPA_exp: alpha-dioxygenase 3 [Lycopersicon esculentum] (GB:DAA01542.1); similar to alpha-dioxygenase 2 [Solanum lycopersicum] (GB:CAH64542.1); similar to alpha-DOX2 [Lycopersicon esculentum] (GB:AAR05647.1); contains InterPro domain Animal haem peroxidase; (InterPro:IPR002007); contains InterPro domain Haem peroxidase; (InterPro:IPR010255) 0.907963280904244 11.9932857805463 1.42074908722452e-06 0.0101455692318703 10.9852799395510 12.7750526669577 0.907963280904244 0.0492070927861584
AT1G70420_at 9.51619134386642 9.9153226839975 9.82846913242329 9.87539882995637 10.9250849859586 10.3466105725288 8.36573742156524 8.53380055703521 6.91267915796607 7.48864642883971 8.72912414353788 8.676765374376 9.3010622225487 9.18212076697834 8.03556725560932 8.29046312185793 8.9017401049018 8.3549424624334 7.3059051485077 0.169556722602236 0.169556722602236 0.169556722602236 0.169556722602236 0.179488520314636 0.176124345300532 0.178372737771750 0.173930210416873 0.199012608821022 0.187354635235261 0.176010450213867 0.171236600001875 0.169556722602236 0.186132296008096 0.178572381793677 0.174052196168386 0.188688242819539 0.175821893939952 0.177802196950348 1 1 - 26543690 26544078 26543864.091 26543237 26544425 - gene protein_coding_gene FALSE TRUE AT1G70420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23710.1); similar to Protein of unknown function DUF1645 [Medicago truncatula] (GB:ABE93113.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 1.30467874084664 11.8817670632435 1.53065910641455e-06 0.0109289060197999 10.9473915387681 17.6231853209006 1.30467874084664 0.125316682269636
AT1G68440_at 6.24769179339197 6.41688675226708 6.70481308831577 6.62419279695808 5.87472741568178 5.52756206788785 7.74707969326212 7.88058095736179 7.39003573283476 7.29647088544636 6.64711863149465 6.13401781750334 6.47934469826718 6.77719832508447 5.33579781100225 6.53272340895115 5.92443177210495 5.7658294586532 7.19457577597577 0.178008584922597 0.178008584922597 0.184427674725059 0.187284341116276 0.189612398676517 0.182371287517122 0.187788474940457 0.18136894040657 0.205553622913092 0.178167564248331 0.178008584922597 0.182566809460026 0.182531713120861 0.184714090744494 0.210617566567607 0.183144860714432 0.191211687309497 0.191020117474189 0.187386306215749 1 1 + 25662162 25662667 25662436.727 25661696 25662936 + gene protein_coding_gene FALSE TRUE AT1G68440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25400.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93249.1) -0.99218617394809 -11.8147754466143 1.60121631304771e-06 0.0114310832588476 10.9243028429841 13.3745677565416 -0.99218617394809 0.072077409101926
AT1G72970_at 3.91864138506623 4.41320797550834 2.11483346133123 1.97439830719847 2.48316821018221 2.55790032252929 6.40102864724889 6.92931212551502 6.50489922286398 6.40348620779088 7.93495112846258 8.81684699574064 6.51206970708973 7.11160618201283 8.16891298762429 6.89559324355166 4.23104063303482 6.52111437787642 6.6473409140045 0.278857368568287 0.274754622140408 0.308083003399176 0.295149961578171 0.275713067789586 0.287034568767242 0.272103660850362 0.278468802391047 0.275237208888349 0.275218695256298 0.273246261161723 0.272103660850362 0.272103660850362 0.276172051799998 0.272103660850362 0.272103660850362 0.276393151840761 0.278087561604210 0.277275099359586 1 1 + 27458766 27459191 27458990.091 27456427 27459625 + gene protein_coding_gene FALSE TRUE AT1G72970.1 HTH (HOTHEAD); aldehyde-lyase Originally identified as a mutation that causes floral organs to fuse together. About 10-20% of mutants also have defects in ovules. Mutants have reduced fertility most likely as because of fusions that pistil emergence. The protein has similarity to the mandelonitrile lyase family of FAD containing oxidoreductases and is predicted to be secreted (SignalP).It is expressed in all tissue layers of roots, inflorescences, stems, leaves, and flowers and is also expressed in siliques. Expression is highest in inflorescence and flower tissue.Transmission of mutant alleles to the progeny shows non mendelian segregation- a percentage of mutant alleles revert back to a previous parental (e.g. grandparental) wild type allele. It has been suggested that an RNA template driven or other extra-DNA genomic mechanism may be responsible for the non-mendelian inheritance of HTH. Reversion events in alleles at other loci have also been observed to occur in plants with an hth mutant background indicating a genome wide effect. Identical to Protein HOTHEAD precursor (Protein ADHESION OF CALYX EDGES) (HTH) [Arabidopsis Thaliana] (GB:Q9S746;GB:Q9SXZ3); similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12570.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os09g0363900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062996.1); similar to putative mandelonitrile lyase [Oryza sativa] (GB:AAF65820.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) -1.31376549965999 -11.7941502977023 1.62366222331267e-06 0.0115897009500059 10.9171441241622 10.6203574818944 -1.31376549965999 0.128222466683990
AT1G07420_at 7.85910322803547 8.29120983486094 7.97796753283762 8.18960012179374 8.8748357661842 8.63006222377128 7.0839397933131 7.29257476095938 7.36802380483604 5.91137416900435 8.24481500639602 7.42012821663617 8.1234321312904 8.3247240588735 7.53785487415472 7.62650855213967 7.1158572470217 7.71493948543211 5.52790156262784 0.199459370394947 0.1916537456232 0.211184749918345 0.189090337019618 0.193507992762186 0.200383758167581 0.202002923421833 0.189730932237655 0.195771160212650 0.202720355371943 0.192172903366790 0.193742820979396 0.198310136453580 0.199317453195572 0.191978345387391 0.192142378223924 0.202567310646109 0.193893868035403 0.196951656624168 1 1 + 2279003 2279820 2279389.091 2277804 2280294 + gene protein_coding_gene FALSE TRUE AT1G07420.1|AT1G07420.2 SMO2-2 (sterol 4-alpha-methyl-oxidase 2); C-4 methylsterol oxidase Arabidopsis thaliana sterol 4-alpha-methyl-oxidase mRNA similar to SMO2-1 (sterol 4-alpha-methyl-oxidase 1), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT2G29390.2); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 1.14042105392906 11.7905815919711 1.62758138692938e-06 0.011616048358515 10.9159030582918 15.0412278037107 1.14042105392906 0.100154720871677
AFFX-Athal-Actin_M_at 10.4984017418818 10.4425578239015 11.1950814884521 11.2474312715539 10.9918150298555 11.148418180833 10.2923488458855 10.7577200729905 10.1772409141574 10.2717744952119 11.7585582641441 11.6178011240188 11.7413862183678 11.6942593885756 11.8146493289956 11.5757958406952 11.4809033732261 11.5392058835857 10.0875928796159 0.0540638900497251 0.0529039049182476 0.0555748524314826 0.0541939461508316 0.0529039049182476 0.0560068590609043 0.0529039049182476 0.0549748962158983 0.0580680506888359 0.0535384796733225 0.0536842684232453 0.0529039049182476 0.0537126207335619 0.0544413035006432 0.0538554818095365 0.0529039049182476 0.0538358842411888 0.0548779006571381 0.0540234282244721 NA NA NA NA NA FALSE FALSE 1.06093993477410 11.7879486899362 1.63047959554937e-06 0.0116351023938403 10.9149869733899 21.7375664856006 1.06093993477410 0.0859985865029572
AT1G20630_at 10.5295775687133 10.5525037438399 10.9311301197091 11.0488668681066 10.8143811359576 10.7190317058128 9.68697018543868 9.56437478678602 8.9174461583741 8.42747827768373 9.59016955607442 8.68178261783166 8.93363990938015 9.33640976661125 9.09253128685622 8.5988024001682 9.51441091996764 9.98201034788892 7.63608299614461 0.134458973953082 0.129611680123183 0.134724789830882 0.129764144537311 0.134594046652658 0.129480792734305 0.132202022154903 0.128736752777629 0.13749744221928 0.146082870920686 0.129967754649438 0.131597979042101 0.135675579788695 0.137527841341648 0.143583134659242 0.135246312388314 0.137318840937804 0.130592003224971 0.155445785950484 1 1|0 +|/ 7148737 7149567 7148994.3 7146626 7149967 + gene protein_coding_gene FALSE TRUE AT1G20630.1 CAT1 (CATALASE 1); catalase Catalyzes the reduction of hydrogen peroxide using heme group as cofactor. Protects cells from toxicity by H2O2. Identical to Catalase-1 (EC 1.11.1.6) (CAT1) [Arabidopsis Thaliana] (GB:Q96528;GB:O22529;GB:Q9LDS9); similar to CAT2 (CATALASE 2), catalase [Arabidopsis thaliana] (TAIR:AT4G35090.1); similar to CAT3 (CATALASE 3), catalase [Arabidopsis thaliana] (TAIR:AT1G20620.1); similar to catalase [Raphanus sativus] (GB:AAF71742.1); similar to catalase [Prunus persica] (GB:CAD42908.1); similar to catalase [Brassica juncea] (GB:AAD17934.1); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226) 0.84210650469927 11.7601967211949 1.66137976041768e-06 0.0118539445905801 10.9053073508925 19.2524655532946 0.84210650469927 0.0339596120349353
AT2G15960_at 11.3348177829688 11.5320699447031 11.1476243082807 11.2503147399813 12.0145485021595 11.9042039804039 10.0876368250616 10.1570815183671 10.5012797669997 10.2822571908970 11.8251010695022 11.4273118203107 11.5158691910586 11.6404908055953 11.1952610049554 11.1105586907231 11.1399176364554 11.1607555005333 10.5246606245527 0.110166320024899 0.110873029967129 0.112042686800858 0.115934514163728 0.112636366209677 0.114426225441656 0.115986642454586 0.119108396875824 0.128404059078773 0.116626906774528 0.11031401108583 0.109029646452598 0.112005859269732 0.121238378148825 0.11088455079576 0.109029646452598 0.116820582947981 0.112736233778470 0.112618559101671 2 2 + 6954443 6954644 6954561.636 6954391 6954770 + gene protein_coding_gene FALSE TRUE AT2G15960.1 unknown protein 0.871056859503258 11.7176369141098 1.71004130562114e-06 0.0121994346743012 10.8903784798519 22.0850242380949 0.871056859503258 0.0446105986999905
AT2G47240_at 5.6350692288026 6.20407437964801 4.64819271021423 4.64731871652998 6.45460634325944 6.37636712425034 3.4299991338808 3.68966354570995 5.53117214689266 4.15158528576973 6.75316502874267 7.75335143668228 5.18663720080893 5.76518262652871 7.01672494792288 6.40718960472516 4.57231633061334 5.47883360288974 3.93160430236095 0.197645686242287 0.197216280572714 0.199893334234121 0.18652447455194 0.195317456827217 0.195524267314618 0.191017433063665 0.191241691165907 0.186674265054312 0.189780044272859 0.191059535056865 0.198202279920240 0.18652447455194 0.186812687761252 0.194130609527234 0.190444652903159 0.204948467104831 0.187700867363700 0.191983707314823 2 2 + 19403830 19404651 19404189.455 19399628 19404901 + gene protein_coding_gene FALSE TRUE AT2G47240.1|AT2G47240.2 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein|long-chain-fatty-acid-CoA ligase similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00145.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE87767.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 1.18523708528813 11.7098820749996 1.71907764524287e-06 0.0122621808435174 10.8876472225435 10.4630592356396 1.18523708528813 0.109081367622099
AT4G23940_at 5.40257698030954 5.23557259602673 3.96583966129467 3.64520011696028 4.24277849289189 4.25108429234571 6.71169331140585 6.23908812382674 4.96871672065315 5.76060954562921 4.30579926991075 5.77760682370127 4.42911987468863 4.64362002001259 5.69333780541285 5.83210314256352 5.03929166328289 5.0735869145041 5.82789219438455 0.227310956732259 0.215018533955311 0.228822977352463 0.224354538259268 0.216549822551456 0.225663608493182 0.216951283609882 0.219237281658686 0.220167544219600 0.227259410580393 0.217092633913974 0.215018533955311 0.215018533955311 0.227102212824133 0.220345734642401 0.215420305807498 0.215721511606301 0.215466965336997 0.219827968214109 4 4 + 12441192 12441821 12441546.818 12437118 12441978 + gene protein_coding_gene FALSE TRUE AT4G23940.1 FtsH protease, putative similar to VAR2 (VARIEGATED 2), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G30950.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL55821.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -1.14538587149090 -11.6725103458970 1.76337664181445e-06 0.0125764022094207 10.8744368043296 10.2709197016236 -1.14538587149090 0.102982041833137
AT3G46900_at 6.07891363296678 6.12043790048988 4.39394565137194 4.24756068287915 5.28656004298913 5.20149546350619 5.97323643816547 6.32679295991309 4.81329941095385 5.39065451669313 3.32443863655198 3.73377582263525 5.43705219550506 4.27650964410786 2.79921185175047 6.33881730255004 6.02202875095533 3.49916490758436 4.82634914993177 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.292801574898091 0.295154416394659 0.292801574898091 0.292801574898091 0.294350293967314 0.297415971125811 0.297583418729056 0.297727509620446 0.292801574898091 0.292801574898091 0.313157334730617 0.299317248527072 0.292808576160658 0.309699792489974 0.293623263604166 3 3 + 17279999 17280292 17280156.273 17279860 17280495 + gene protein_coding_gene FALSE TRUE AT3G46900.1 COPT2 (Copper transporter 2); copper ion transporter encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast similar to copper transporter, putative [Arabidopsis thaliana] (TAIR:AT2G26975.1); similar to putative copper transporter protein [Oryza sativa (japonica cultivar-group)] (GB:BAB56072.1); contains InterPro domain Ctr copper transporter; (InterPro:IPR007274) -0.96184045480087 -11.6687594509434 1.76789248188138e-06 0.0126068412882961 10.8731065006015 10.1731058039425 -0.96184045480087 0.0682175734989552
AT3G10985_at 7.43807574632038 7.13109727776447 8.04003311574994 8.11126151532581 8.47680815801281 7.97215718718634 7.96707710787569 8.02172959459748 6.5551834420305 5.81002279736562 8.19694945554839 7.8420361252046 8.29428127263446 8.31132080336027 7.43490325369944 8.51634054368503 7.96718848094283 6.3932546658816 5.92809882566921 0.181147161875045 0.176211009540655 0.188584404839655 0.191325673490721 0.188322341532480 0.183665223181753 0.183102181671655 0.183456826085427 0.207707513744859 0.199186192119194 0.184346690227348 0.180708436132244 0.176211009540655 0.198398287771278 0.178090418780535 0.180056611687123 0.217284596840335 0.187769359706062 0.191353829520504 3 3 + 3442682 3443055 3442877.4 3442534 3443451 + gene protein_coding_gene FALSE TRUE AT3G10985.1 wound-responsive protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01740.1); similar to wound-induced protein WI12 [Mesembryanthemum crystallinum] (GB:AAD23999.1); contains InterPro domain Wound-induced WI12; (InterPro:IPR009798) 1.14116801626352 11.6051096074711 1.84651815560110e-06 0.0131656744494359 10.8504087367182 14.8784313029248 1.14116801626352 0.103394732596563
AT2G04030_at 7.79199870386452 7.80066875953718 7.56962958780232 7.27571887163819 7.01747979018949 6.45218297055431 8.60616710814667 8.40083364002675 7.86437846502581 8.49619715424055 6.36451207281658 6.64662823593848 7.00981451798831 6.29223192731603 7.48916300672063 7.41485439515238 7.76348721119589 6.5955001280296 8.55279529890308 0.175352018155507 0.182528050072235 0.179485260582136 0.180997464210994 0.178738729493558 0.179439232234789 0.185302400564898 0.178343237139807 0.181407459366984 0.183751198408317 0.185272408352904 0.175609411050023 0.187743779224082 0.182440473123143 0.187991453330919 0.188309275988013 0.186166886058378 0.183976112654238 0.178380928150382 2 2|0 +|/ 1285130 1285878 1285436 1281838 1286101 + gene protein_coding_gene FALSE TRUE AT2G04030.1|AT2G04030.2 CR88 (EMBRYO DEFECTIVE 1956); ATP binding Encodes a chloroplast-targeted 90-kDa heat shock protein located in the stroma involved in red-light mediated deetiolation response. Mutants are resistant to chlorate, have elongated hypocotyls in light, and affect the expression of NR2, CAB, and RBCS but NOT NR1 and NiR. similar to ATP binding [Arabidopsis thaliana] (TAIR:AT3G07770.1); similar to heat shock protein 90C [Chlamydomonas reinhardtii] (GB:AAU10511.1); similar to heat-shock protein [Secale cereale] (GB:CAA82945.1); similar to Hsp90 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22030.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -1.21429864183806 -11.5935390637562 1.86122488200743e-06 0.013268672183831 10.8462574533113 15.2400753837789 -1.21429864183806 0.115853732913922
AT4G11600_at 10.4306602826689 10.6521265619071 11.0713518809800 10.9802593019414 11.1938271169391 10.9030857074943 10.0797932879202 9.94181744693817 8.84524656235989 9.19594901211897 10.2065818510168 9.84787417831988 10.2320405920618 10.2512933707874 9.54950546737917 9.76547170780132 10.4185793493042 10.0388073775423 8.59500551144977 0.137892526033323 0.131702176778328 0.138516839484440 0.132227533131882 0.140447626552590 0.133622593096554 0.138217150490399 0.127026342399177 0.153230181619719 0.141863115464698 0.129612027732635 0.130030914155992 0.130877013029884 0.143317500934043 0.13742828769868 0.130084452235944 0.142357650468465 0.133110565724049 0.143579620704685 4 4|0 -|/ 7010172 7011100 7010562.125 7009763 7011369 - gene protein_coding_gene FALSE TRUE AT4G11600.1 ATGPX6 (GLUTATHIONE PEROXIDASE 6); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable phospholipid hydroperoxide glutathione peroxidase 6, mitochondrial precursor (EC 1.11.1.12) (PHGPx) (AtGPX1) (GPX6) [Arabidopsis Thaliana] (GB:O48646;GB:Q94BV3); similar to ATGPX7 (GLUTATHIONE PEROXIDASE 7), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G31870.1); similar to glutathione peroxidase [Malus x domestica] (GB:AAQ03092.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Src homology-3; (InterPro:IPR001452); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.960533574223593 11.5859505089998 1.87094104392411e-06 0.0133360677610910 10.8435305995641 20.1153666643917 0.960533574223593 0.0694190984570295
AT4G14580_at 4.08401826954868 3.98579861973104 5.05988748026379 5.27894537688252 5.48960122325575 5.44527982859651 4.05557584986731 4.17286430795958 4.73176137552377 5.03434733020828 6.36123633774302 4.71736841762191 5.60398600643818 5.89415720320764 4.44646251117148 5.43624471272203 5.99536681399536 5.37926893676208 5.19863365635007 0.238686379366526 0.225731198771465 0.234692940385305 0.2308032509027 0.238718809326241 0.238291707796853 0.240075270558404 0.225731198771465 0.234994012118134 0.234667203395088 0.229354973639925 0.230466441215421 0.229031151689882 0.233690848745928 0.227431500066642 0.225731198771465 0.231684554405086 0.236995649124436 0.227005108277120 4 4 - 8367925 8368413 8368199.364 8367883 8369163 - gene protein_coding_gene FALSE TRUE AT4G14580.1 CIPK4 (CBL-INTERACTING PROTEIN KINASE 4); kinase CBL-interacting protein kinase similar to CIPK7 (CBL-INTERACTING PROTEIN KINASE 7), kinase [Arabidopsis thaliana] (TAIR:AT3G23000.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:ABJ91213.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.867439064451663 11.5664024496170 1.89623070976390e-06 0.0135144362684873 10.8364907745356 9.93025078025569 0.867439064451663 0.0468701649238726
AT2G32150_at 9.58683804267421 9.64954562185028 11.3124124393446 11.3157090457200 11.3342136523928 11.1875851971476 10.6009687122555 10.4182876438315 10.5967403890327 10.6448456733225 11.1344381807587 10.8145846707054 11.2991588330242 11.2614459020170 10.5334075419705 11.3160153411556 11.2287173875994 11.0190176069672 10.5515218751677 0.0732349769773243 0.0671091083994609 0.0651489868028816 0.0646411694304498 0.0645681764133223 0.0672504789984955 0.0676646464777041 0.066995893105869 0.0738625950054934 0.0659891728374108 0.0643841499245364 0.0637012980212093 0.0657672868821022 0.0658793773084363 0.0645695868099879 0.0638928320746494 0.0671131341265959 0.0673788323431117 0.0651368751331753 2 2|0 +|/ 13666826 13667584 13667281.889 13666083 13667841 + gene protein_coding_gene FALSE TRUE AT2G32150.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G02230.2); similar to putative phosphatase [Phaseolus vulgaris] (GB:CAD57681.1); similar to putative hydrolase [Glycine max] (GB:AAM94615.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Pyrimidine 5-nucleotidase; (InterPro:IPR010237); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) 0.850857807841081 11.5604098547477 1.90405941486639e-06 0.0135683273903379 10.8343281935831 21.5124704588349 0.850857807841081 0.041969015251087
AT1G03870_at 6.00841684718571 6.36950198794542 4.10670032022447 4.70738092586233 5.06039576202304 5.30814156234905 7.23170508634415 7.56816184626922 9.43315991445768 8.32886431190072 9.70358517518997 8.02210240229435 8.71947284986216 9.04683063765363 8.67770975984959 7.9934760504079 6.16728612025233 8.29966860507386 9.45568837651017 0.248414523201624 0.240381973371032 0.254357679202698 0.243611013019253 0.243645806253013 0.251829432444283 0.235930546261572 0.240268596648698 0.249169766699698 0.235214126616907 0.235214126616907 0.235214126616907 0.239377466418571 0.235214126616907 0.238727186342264 0.239755655476848 0.241970407843482 0.245164811106185 0.235547024211341 1 1 - 982693 983186 982915.273 982508 983539 - gene protein_coding_gene FALSE TRUE AT1G03870.1 FLA9 (FLA9) fasciclin-like arabinogalactan-protein 9 (Fla9) Identical to Fasciclin-like arabinogalactan protein 9 precursor (FLA9) [Arabidopsis Thaliana] (GB:Q9ZWA8;GB:Q8H794); similar to fasciclin-like arabinogalactan-protein, putative [Arabidopsis thaliana] (TAIR:AT5G44130.1); similar to unknown [Brassica rapa] (GB:ABK78690.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.37129810843564 -11.5591744248955 1.90567784242634e-06 0.0135779546272877 10.8338820957323 14.4957192011233 -1.37129810843564 0.141204631542089
AT3G04000_at 5.66568680821017 5.97263617648037 6.76940362899724 7.06776702646476 6.84942437765128 7.1409669844825 3.61097085993139 3.86754644034362 3.80712212659898 3.98798626114468 3.68790986445943 3.49857778738424 3.56278598220522 3.85611474582868 3.73687967492596 4.6087438848673 3.91893160103185 3.88070257825598 3.58897746021599 0.279169667978799 0.277363340112978 0.27812354440122 0.284987440249322 0.278604359870808 0.287875752976254 0.272304573153119 0.274026024464023 0.269981317155567 0.269725886077478 0.264215710336919 0.276099171927058 0.265492015677323 0.263254133225066 0.265478108007112 0.267254080871603 0.283237894109690 0.263254133225066 0.263254133225066 3 3 + 1036043 1036408 1036231.909 1035507 1036679 + gene protein_coding_gene FALSE TRUE AT3G04000.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 1.11340795768709 11.5190311215440 1.95910799081112e-06 0.0139566853265384 10.8193380866851 9.68731331158169 1.11340795768709 0.100023013555711
AT1G04770_at 8.146761926629 8.45329312528331 8.13476721322337 8.17884940523555 8.30298534806654 7.96026610369102 8.93332791864354 8.75789618743029 7.37405207921258 8.60734900277926 6.76893139635182 5.38172028218376 6.35558495450955 6.82133156361433 4.78931287745528 6.1316627048363 6.67818774184171 5.66679842260927 7.15116409546494 0.215352751024624 0.220207079072511 0.215267835049899 0.219657418465272 0.219079419059481 0.226477459800781 0.22434404982099 0.217827149788969 0.227667259276754 0.216109732655332 0.215453470048853 0.235777318846032 0.228745297785264 0.227774821550606 0.240668860941922 0.218226198286395 0.215418170132239 0.237970428198415 0.218096833959807 1 1|0 -|/ 1336656 1337108 1336839.3 1336370 1337848 - gene protein_coding_gene FALSE TRUE AT1G04770.1 male sterility MS5 family protein similar to male sterility MS5 family protein [Arabidopsis thaliana] (TAIR:AT5G48850.1); similar to Os05g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055980.1); similar to unknown [Oryza sativa] (GB:AAC72543.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -1.03263329408471 -11.5019929631358 1.98228753748474e-06 0.0141198341295038 10.8131364066824 15.2510415545641 -1.03263329408471 0.0855067608819189
AT3G46440_at 8.24947283173707 8.47837893996876 9.0305587638205 9.01465924262756 8.65198813670114 8.51191502553783 5.69643078310996 6.48951578895213 5.5520435720849 5.46829428658302 6.58687600242293 6.21970128794954 6.51555601794935 6.67351290506808 5.98155486965084 6.21756533572337 7.47137433751693 6.37696366654941 4.91018287726135 0.211142269724568 0.209902587895757 0.215428790872157 0.216124274734424 0.211289259784880 0.212529855585318 0.216612525951200 0.211151382824404 0.228443470231760 0.222581678329921 0.215944121304320 0.211118624896922 0.210771447077599 0.212258680398709 0.209902587895757 0.212218299686660 0.217872419771492 0.219690239989577 0.209902587895757 3 3|0 -|/ 17100253 17101258 17100732.9 17100030 17102860 - gene protein_coding_gene FALSE TRUE AT3G46440.1|AT3G46440.2 UXS5 (UDP-Xyl synthase 5); catalytic encodes a protein similar to UDP-glucuronic acid decarboxylase. UDP-glucuronic acid decarboxylase produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. similar to UXS3 (UDP-GLUCURONIC ACID DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT5G59290.2); similar to UXS6 [Arabidopsis thaliana] (TAIR:AT2G28760.3); similar to UDP-glucuronic acid decarboxylase 3 [Populus tomentosa] (GB:AAX37336.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 1.38452259022025 11.4663646358358 2.03175049911241e-06 0.0144701270546786 10.8001124954725 13.9231457548053 1.38452259022025 0.144917664279886
AT1G20693_at 11.1696221124056 11.2670406937970 11.3407524039415 11.2973424366461 11.5737034971184 11.4011446355058 10.5067164544598 10.6607891929306 9.76857281159471 9.61198250576698 10.7739596428764 10.9615969400976 11.0831347192071 11.0432450776146 10.7575891844285 10.8809559019677 10.4731894631882 10.4315297914430 9.43505184451014 0.0803567402011713 0.0774844456543033 0.0805541727760304 0.0780219799473129 0.0785887220841772 0.0855909384476146 0.0785047139481433 0.0784357561073069 0.084028923076905 0.07945732434745 0.0780656382962885 0.0774844456543033 0.0774844456543033 0.0800796339072674 0.0779775128792869 0.077593121744331 0.0830466288908394 0.0800794529665331 0.0791019691751539 1 0|1 /|+ 7177409 7178112 7177632.125 7176765 7178810 + gene protein_coding_gene FALSE TRUE AT1G20693.1|AT1G20693.2|AT1G20693.3 HMGB2 (HIGH MOBILITY GROUP B 2); transcription factor|HMGB2 (HIGH MOBILITY GROUP B 2) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to HMG1/2-like protein (SB11 protein) (GB:P26585); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.848820666358489 11.4416036543750 2.06693461240308e-06 0.0147186413749224 10.791016576622 21.3550651670473 0.848820666358489 0.0440830303618885
AT2G30870_at 11.3650869307078 11.3615386174961 11.6882191502794 11.6817799401434 11.567389111937 11.3180319435656 10.4154926000943 10.3073902760925 9.99443940512994 10.3665231050302 11.1424128248746 11.4833817149090 10.9007305469911 11.1336560565121 11.1385236477414 11.1106371734282 10.8034068219363 11.0725489658118 9.89607121624987 0.112298435764721 0.108106032690058 0.118761416814524 0.114036225177668 0.111670624059811 0.118706553695518 0.108524302140506 0.114154992924060 0.118235160673457 0.115314530149650 0.114568533740612 0.106426995727162 0.108570319035072 0.113118432089477 0.107600858856677 0.10385316069346 0.110160298784897 0.105289926359430 0.118150616513404 2 2|0 +|/ 13148684 13149436 13149143.111 13148434 13149690 + gene protein_coding_gene FALSE TRUE AT2G30870.1 ATGSTF10 (EARLY DEHYDRATION-INDUCED 13); glutathione transferase early dehydration-induced gene ERD13 homologous to tobacco and maize glutathione S-transferases. Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002) Identical to Glutathione S-transferase ERD13 (EC 2.5.1.18) (GST class-phi) (ERD13) [Arabidopsis Thaliana] (GB:P42761); similar to ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G30860.1); similar to glutathione S-transferase [Pyrus communis] (GB:ABI79308.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.856981120302946 11.4187835603413 2.09996174499156e-06 0.0149517276243399 10.7826011112421 21.8050361352040 0.856981120302946 0.0470502386640965
AT3G12920_at 8.84092388735854 9.0701403229609 7.93257564402433 7.65267907881297 7.7299141763047 7.6634861105766 9.24423960338918 9.43136736666355 9.46950805454818 9.50274336501077 9.52114728797843 9.61245508011501 9.00086752355171 9.13097485771755 9.37767183901262 9.41083876548648 8.18429734408868 8.3933512179649 9.79256889871006 0.155020379290731 0.148773678162742 0.156899431186491 0.156400874280993 0.158628517052625 0.150289991640081 0.142942154550869 0.145792039121570 0.14774923093768 0.14663655180356 0.142942154550869 0.142942154550869 0.143719767786999 0.144328287150227 0.143312560464757 0.142942154550869 0.161095395997907 0.153214315689513 0.146244385091021 3 3 - 4122135 4122491 4122322.182 4121890 4123515 - gene protein_coding_gene FALSE TRUE AT3G12920.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G79110.2); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE88778.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.955663496298485 -11.4164206497500 2.10341494559487e-06 0.0149742109976899 10.7817279419942 17.7792777382176 -0.955663496298485 0.0714176594026055
AT2G25850_at 7.05351606875305 7.09787956373728 6.94857515963267 6.98081462719322 7.06193676636305 7.22166717149551 4.50453757652986 4.84304347067069 6.12195558165703 6.48469090892641 7.27849653073331 7.83010423469698 6.64118840643562 7.2953716436456 7.05757683889096 7.61770782110591 6.96856689078488 6.99822285212277 6.9893508492592 0.186415176307612 0.187497037247348 0.194596086700895 0.186451179226278 0.186206432320013 0.191099765101110 0.196542835829926 0.196471890134989 0.196923667567659 0.199732704728562 0.186818764895444 0.182414591503703 0.197257498491935 0.190305320065844 0.189069779939028 0.182414591503703 0.196385987861302 0.186319955815717 0.198906918042872 2 2|0 -|/ 11033222 11034180 11033897.6 11032588 11037705 - gene protein_coding_gene FALSE TRUE AT2G25850.1|AT2G25850.2|AT2G25850.3 nucleotidyltransferase family protein|nucleotidyltransferase similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.6); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010) 0.928704775134759 11.4148891915383 2.10565641958054e-06 0.0149880623945743 10.7811618408061 13.3354480583384 0.928704775134759 0.0654658143722928
AT3G10410_at 9.96175118675087 9.86455081203894 9.9772435496568 9.86425190209751 10.3909834173666 10.0554950376656 8.99819251365821 9.03329154519222 6.73739169552624 8.01380240480024 8.4207621471594 8.00341929828186 8.57510265105397 8.57477341509166 8.2092790252272 7.96765409485839 9.40971150801396 9.06196255668045 7.12831170366803 0.211766376265592 0.210345325987956 0.210399361795039 0.215513180454849 0.210345325987956 0.213505733090424 0.210345325987956 0.216048928718712 0.233143956321343 0.224099273891791 0.217382778137653 0.219164352012157 0.210345325987956 0.210360065733612 0.223298633397570 0.219506418229347 0.210929221683547 0.210345325987956 0.240921038706325 3 3|0 -|/ 3235553 3236460 3236030.1 3235296 3238118 - gene protein_coding_gene FALSE TRUE AT3G10410.1 SCPL49 (serine carboxypeptidase-like 49); serine carboxypeptidase Identical to Serine carboxypeptidase precursor (EC 3.4.16.-) [Arabidopsis Thaliana] (GB:P32826;GB:Q42107;GB:Q9CAE5); similar to SCPL48 (serine carboxypeptidase-like 48), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G45010.1); similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to carboxypeptidase type III [Theobroma cacao] (GB:CAC86383.1); similar to carboxypeptidase Y-like protein (GB:AAB04606.1); similar to putative serine carboxypeptidase precursor [Gossypium hirsutum] (GB:AAL67992.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.921105724000469 11.4091932278424 2.11401649606744e-06 0.015045455402512 10.7790550963632 17.6787208397420 0.921105724000469 0.0638192706210553
AT3G17170_at 7.09899800448995 7.15383570729317 6.29047206612116 6.13147848101054 6.93518495038051 6.46437457601787 7.08967914683673 7.01324040786658 7.04561342778613 7.33704233119606 4.78325645337687 6.19649407878939 5.43490263837799 5.05924905867923 6.78951439074403 6.03340598032235 6.08370769695768 5.67346859017734 7.19066903316765 0.213353934921949 0.206874934213316 0.210010663885716 0.215498512480054 0.208369960546468 0.216812570469367 0.212162767664661 0.222561869224444 0.210315916739035 0.210536736154121 0.219525689751919 0.209553909449201 0.207120417444601 0.209785973668395 0.21439286563921 0.205370907374942 0.211417100229708 0.21410854295662 0.212487674739668 3 0|3 /|- 5853311 5853866 5853555.5 5853065 5854912 - gene protein_coding_gene FALSE TRUE AT3G17170.1 RFC3 (REGULATOR OF FATTY-ACID COMPOSITION 3); structural constituent of ribosome similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03710.1); similar to ribosomal protein S6 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98957.2); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529) -1.03395960068046 -11.3998261559693 2.12784512305189e-06 0.0151417458956373 10.7755862780060 13.2460869799911 -1.03395960068046 0.0875238266152696
AT3G52750_at 8.35208949722655 8.45263317724849 7.21906501402086 6.99737901438797 7.4085065755014 7.31936640213401 9.15140329363985 9.13944014872611 8.85940363233663 9.3539866966908 8.95918100675743 9.34859145591987 8.67331158473373 8.73419287526882 9.20197591782321 9.18287449365139 8.06418128490142 9.21703094890107 9.03036389724361 0.138565997469748 0.144522158910845 0.157505928478365 0.170368563622796 0.160647075094916 0.146042979408238 0.138511535666408 0.147911330603934 0.154455858450916 0.142961528668691 0.139447885194246 0.13751676922435 0.140641453759106 0.14220898366948 0.144722520342342 0.13751676922435 0.163915996598049 0.144498504191358 0.142565328160001 3 3|0 -|/ 19560863 19562189 19561379.333 19560639 19563992 - gene protein_coding_gene FALSE TRUE AT3G52750.1 FTSZ2-2 (FtsZ2-2); structural molecule Nuclear gene that encodes a plastidial division protein (FtsZ2-2). similar to FTSZ2-1 (FtsZ homolog 2-1), structural molecule [Arabidopsis thaliana] (TAIR:AT2G36250.2); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE77845.1); similar to FtsZ-like protein [Nicotiana tabacum] (GB:CAC44257.1); similar to chloroplast FtsZ-like protein [Nicotiana tabacum] (GB:CAB89288.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.848198120230793 -11.3970458126284 2.13196909083778e-06 0.0151689600813108 10.7745556402839 17.0069448177365 -0.848198120230793 0.0449085359761614
AT1G48330_at 7.72951116832132 8.18267754481062 7.31364618903673 7.43884621024979 8.8009184407333 8.46691391330289 5.42112224504558 6.04021959205541 4.48582241556022 5.07289834913047 5.9209244583151 6.47134143833624 7.56808844448952 6.70315989065399 6.22933490878259 6.59180269829153 6.80251391583998 6.46914246826069 5.40288072204362 0.238367706679408 0.241394947559273 0.227891875390350 0.226982169693672 0.249193863769888 0.236504533847228 0.228259703322948 0.231832033600434 0.253414130261733 0.238022711635888 0.237159718249373 0.231137827734541 0.231415490528354 0.226706253536051 0.237134948944442 0.238513658508116 0.226706253536051 0.226706253536051 0.233230396634154 1 1 + 17867616 17867762 17867692.909 17867505 17868054 + gene protein_coding_gene FALSE TRUE AT1G48330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17580.1) 1.38451829153277 11.3852033115864 2.14963442833401e-06 0.0152924993231682 10.7701605401642 13.2151014246691 1.38451829153277 0.146420543675913
AT1G75540_at 5.18719826577284 5.45823510691888 5.02670604999617 5.09019211998392 6.49881273817021 6.27047591961838 4.74531984647694 4.62158969726964 5.5142131880136 4.84072715243418 6.34505905496846 6.62583331763291 6.52237878178113 6.21645186110871 6.48179812385011 6.01945819886141 6.0679574525748 5.74209919327644 4.99637004256702 0.219173538719073 0.210420574093579 0.222227908599622 0.220240676440756 0.210860086800395 0.220550556527308 0.213484937358342 0.22130375031892 0.218366828269617 0.206438109523592 0.213773872192903 0.213765859308793 0.206438109523592 0.206438109523592 0.209425499977533 0.209506393202867 0.213175545294667 0.206438109523592 0.206438109523592 1 1 + 28370212 28370912 28370498.182 28369720 28371313 + gene protein_coding_gene FALSE TRUE AT1G75540.1 zinc finger (B-box type) family protein Identical to Putative salt tolerance-like protein At1g75540 [Arabidopsis Thaliana] (GB:Q9LQZ7); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT4G39070.1); similar to H0115B09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67391.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.926993507417204 11.3714497415444 2.17035511111626e-06 0.0154377359053700 10.7650455216889 11.0471826975317 0.926993507417204 0.0658832316766815
AT3G19450_at 8.5443390661404 8.8530338358097 8.0289422295743 8.16049339828148 7.74033187983999 7.60697685200685 9.729974679051 9.6958167544146 9.19244501061383 9.50994949707326 8.50267496033538 9.26538433289185 8.77174211413147 9.33303966725477 8.78540547088851 9.1143200343827 8.51220194125762 8.69842067765824 9.42729685358702 0.176975740758154 0.158815965573111 0.169720179548433 0.173972460196597 0.162781617062763 0.171232788071868 0.164992617101406 0.163919309842619 0.177925257082366 0.160012055806354 0.162497411979037 0.157317141183918 0.167256330366866 0.156449071998121 0.164831432273410 0.156655010507473 0.165775606499801 0.165813759212245 0.159274976875912 3 3|0 +|/ 6746327 6746981 6746593.6 6744604 6747220 + gene protein_coding_gene FALSE TRUE AT3G19450.1 CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4); cinnamyl-alcohol dehydrogenase Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. Identical to Cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) (CAD) [Arabidopsis Thaliana] (GB:P48523); similar to CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34230.1); similar to cinnamyl alcohol dehydrogenase [Ocimum basilicum] (GB:AAX83108.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.912635065584791 -11.3597253026819 2.18819425231065e-06 0.0155624375224334 10.7606760758941 17.6697198053605 -0.912635065584791 0.0627662605061266
AT3G27210_at 8.3748799342126 8.67667943925625 8.18186222957481 8.7174191745153 9.03805533950075 8.57588310001405 4.74082296064156 4.78444429091799 2.25552205351940 2.98372483884757 3.15172077577843 2.76318165539801 3.88087269822973 3.32516297989243 2.55895252606453 3.29382848446831 3.77834746366646 3.35295180955212 2.7191697878261 0.322985063809606 0.322497610796446 0.325887149981470 0.318565907717761 0.329819028656218 0.327855988289761 0.323243040572812 0.312876496669383 0.317989396595422 0.312774890117382 0.306307344939163 0.306307344939163 0.310313653117752 0.31217952778161 0.311465343630443 0.306307344939163 0.313939976317905 0.309815705520123 0.313011401161272 3 3|0 -|/ 10046785 10048100 10047197.6 10046423 10048580 - gene protein_coding_gene FALSE TRUE AT3G27210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40860.1); similar to Os04g0380200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052596.1); similar to OSJNBb0089B03.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03997.1); similar to Os01g0920100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045217.1) 1.29721002185551 11.3591260162269 2.18911045836851e-06 0.0155667644694585 10.7604525100968 10.5942222381770 1.29721002185551 0.133309409560863
AT1G16350_at 6.42590491381645 6.50151419294823 5.08541527122434 5.3782857956839 5.11114934774608 5.69670295569551 6.90068854731032 7.29612272653837 5.19832923806846 6.9654836629358 4.67812510342419 5.75151261806892 5.10903056627318 4.65366913808836 5.81099153215299 5.67021225826157 5.0735436380753 5.09332105963892 6.90664845856691 0.234985238501568 0.233806348522073 0.240646633885758 0.243224122566148 0.232482314836222 0.235740677058133 0.229926497572028 0.233747796295674 0.244759463713209 0.229445797783519 0.233465114164 0.232966386729822 0.229146638764067 0.236503661144987 0.238877507467259 0.230659797374723 0.242700738628605 0.235219084630575 0.232573278447511 1 1|0 +|/ 5592005 5592825 5592341.625 5590945 5593001 + gene protein_coding_gene FALSE TRUE AT1G16350.1 inosine-5'-monophosphate dehydrogenase, putative Identical to Probable inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205) (IMP dehydrogenase) (IMPDH) (IMPD) [Arabidopsis Thaliana] (GB:Q9SA34); similar to inosine-5'-monophosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79470.1); similar to inosine monophosphate dehydrogenase [Glycine max] (GB:CAB38030.1); similar to inosine monophosphate dehydrogenase [Vigna unguiculata] (GB:AAO40253.1); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain IMP dehydrogenase; (InterPro:IPR005990); contains InterPro domain IMP dehydrogenase/GMP reductase; (InterPro:IPR001093) -1.29496948325417 -11.3561543572341 2.19365992218150e-06 0.0155969220467105 10.7593435997700 11.8429085650896 -1.29496948325417 0.133008144510308
AT4G31120_at 5.65383096087467 5.87338938686315 5.28743979461332 5.41618019708002 5.15312890825125 5.10427867354194 6.04513693625298 6.3735569047679 5.34557090776217 5.10451481669091 3.80327675461721 4.06504368307628 4.14974822552291 3.91908759048735 4.08002928560111 4.81659983321788 4.43153800391686 4.04522280502431 5.52807866421147 0.222098680654608 0.209243338624001 0.220402840724255 0.217830878370609 0.208103140804031 0.208271536026525 0.219246084914844 0.209599047739893 0.235307904580305 0.209985926691882 0.225595217019267 0.213356494599743 0.219659231610629 0.208526401864609 0.209497715758438 0.207449566513594 0.217316688964319 0.219893103698347 0.208655688912463 4 0|4 /|- 15132204 15132802 15132494.125 15132017 15136643 - gene protein_coding_gene FALSE TRUE AT4G31120.1|AT4G31120.2 Skb1 methyltransferase family protein similar to Os02g0139200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045843.1); similar to SAM (and some other nucleotide) binding motif; Skb1 methyltransferase [Medicago truncatula] (GB:ABE80388.1); contains InterPro domain Skb1 methyltransferase; (InterPro:IPR007857) -0.954229088678284 -11.3449868623257 2.21085105898418e-06 0.0157169401783185 10.7551715024604 10.3583042547329 -0.954229088678284 0.0723993405062421
AT4G17695_at 5.69263368056699 6.51306295154201 7.25993633343563 7.15117400329155 8.12563024267573 7.17196742828735 4.35366158960381 4.40126076556994 2.96733083083905 2.96978299166016 4.31560648751328 4.47950314533901 4.60615187314955 5.31200363576348 3.56400779160197 4.70732385337077 4.82662725830701 4.7579984245675 3.08018804340509 0.249642420262662 0.247758957311020 0.2509067145616 0.249360294929914 0.251306364120898 0.251901615137286 0.242673181228124 0.242179236712801 0.251091959602729 0.24314056752293 0.245497794446308 0.242352918004098 0.246200401458783 0.248780758181746 0.250861735616712 0.241598748357192 0.241598748357192 0.241598748357192 0.241598748357192 4 4|0 -|/ 9848158 9850307 9849486.222 9848142 9850717 - gene protein_coding_gene FALSE TRUE AT4G17695.1 KAN3 (KANADI 3); DNA binding / transcription factor similar to KAN2 (KANADI 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G32240.1); similar to myb family transcription factor [Brassica oleracea] (GB:ABD65609.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.87620388758434 11.3448565328805 2.21105256939878e-06 0.0157169401783185 10.7551227673838 10.1221259230398 1.87620388758434 0.218670977391298
AT3G59010_at 4.94079925555374 5.6389329468067 6.67882166511194 7.23915733923898 6.65655971063611 6.75099738605057 4.38269862766486 4.91175143984184 5.18853568926625 4.89657133581787 5.81680388506957 5.4411398031171 7.00450861826859 6.35504071575937 4.74431013678146 7.44918102182238 8.46487518573912 6.16197369147131 5.1749557892044 0.252727442326161 0.249561054501612 0.265048942733779 0.251018892776308 0.251741091648251 0.267027417143954 0.250216197142864 0.254067159886261 0.267527158749194 0.248331354734996 0.252733617241562 0.247636861309915 0.250493932970089 0.257320663597405 0.255112312886323 0.253375952213088 0.266864634242097 0.255207876079134 0.258971252168719 3 3 - 21814000 21814534 21814270.364 21813782 21816191 - gene protein_coding_gene FALSE TRUE AT3G59010.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT2G43050.1); similar to putative pectin methylesterase LuPME1 [Linum usitatissimum] (GB:AAK69695.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 1.60293999264170 11.298779832419 2.28359174521041e-06 0.0162294865332104 10.7378277722613 11.6581731648713 1.60293999264170 0.180689462390455
AT1G53035_at 6.29516449401314 7.09183818759946 5.47993001340074 5.72748432277265 7.21943186772233 7.12101147963002 3.06055000827797 3.72234083331438 2.83245488442268 2.69280877608893 4.50433052867866 5.18018280126125 4.98214373180814 5.03812874557543 4.64837558010036 4.31881601591054 4.56277221092486 4.29818812114159 2.79248538016412 0.311294622475776 0.301751446765004 0.303785831194162 0.309434287389194 0.306422652086572 0.334616281719616 0.303739238743823 0.302496718240824 0.311229672312762 0.324245721543091 0.303486635099107 0.302548690727130 0.306744187111627 0.304556080969273 0.321306875712412 0.301751446765004 0.317383204472927 0.310790527591845 0.315598645024545 1 1 - 19765599 19765945 19765765.9 19765368 19766219 - gene protein_coding_gene FALSE TRUE AT1G53035.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15358.1); similar to unknown [Musa acuminata] (GB:ABC41688.1) 1.63176262172336 11.2901443480221 2.29747910347747e-06 0.0163258865093109 10.7345719068117 9.44681901608318 1.63176262172336 0.185065419591053
AT1G75180_at 8.34179443084185 8.38692392698438 7.48208063432205 7.2634493023823 7.94868173818075 7.7703900358366 9.06421498313652 8.9402111010091 8.76503051580055 8.47996079245909 8.20008727188261 7.98243679943475 8.23691868105032 7.86335080227005 7.98820778350562 8.20618858174313 7.98981466195453 7.84913574612528 8.90127505706013 0.169703829183514 0.166440329943425 0.171216036171219 0.176068070556373 0.179956734946973 0.172439871532949 0.177651218808606 0.174727859901855 0.175665340579474 0.165864913260288 0.166177982032358 0.165346386888119 0.165991809662860 0.173427957917492 0.170304034372750 0.164546497769669 0.17285039335434 0.170515191033526 0.169591990078529 1 1 - 28219838 28221080 28220687.091 28219497 28222462 - gene protein_coding_gene FALSE TRUE AT1G75180.1|AT1G75180.2|AT1G75180.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65010.1); similar to Os03g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051432.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82722.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996) -0.871520131795005 -11.2873392059561 2.30201044855807e-06 0.0163557842370051 10.7335132850518 16.5271881004712 -0.871520131795005 0.0538979089755983
AT1G17050_at 7.22229887688393 7.77218599281886 7.16849711024451 7.38255062506096 6.7593559978174 6.68312944823211 9.58876468554214 9.87651072187641 8.60592245724873 9.29630804694916 8.07517143014713 8.45028097502144 8.3845274648754 8.29520893851327 7.65509672984145 9.26590713495453 8.08700256650767 8.20148543722306 9.18656457999366 0.22450405086992 0.210379504845380 0.221643526123624 0.220749198154477 0.224135319738464 0.225135515968502 0.210379504845380 0.219488368622302 0.238976428556057 0.218621629206564 0.219662082938308 0.215953396488321 0.217674764986191 0.222882244631095 0.217411674014066 0.218560489721360 0.236219365518072 0.211544616439978 0.214084536009235 1 1 + 5830821 5831152 5830963.909 5829092 5831326 + gene protein_coding_gene FALSE TRUE AT1G17050.1 SPS2 (Solanesyl diphosphate synthase 2); dimethylallyltranstransferase similar to solanesyl diphosphate synthase (SPS) [Arabidopsis thaliana] (TAIR:AT1G78510.1); similar to solanesyl diphosphate synthase [Hevea brasiliensis] (GB:ABD92707.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -1.17216002535164 -11.2749209216639 2.32219033140212e-06 0.0164968401142807 10.7288209575440 16.4723784053259 -1.17216002535164 0.114373687165612
AT1G52190_at 9.22825747198706 9.37564733635698 8.239017738468 8.2874712448454 8.89597241834479 8.86213494876784 7.97151200045263 7.89820072494013 9.02381785089784 8.86837998574783 11.1193177947202 11.3120130329583 10.9383289027416 11.0869905892959 11.3794246916058 11.2023234581033 10.2358487906359 11.1925068552532 10.3559749432168 0.130967987329819 0.134844635746038 0.142294526562365 0.141999805702651 0.134637601508074 0.139327383631322 0.144318433955759 0.144382806653847 0.139575001733164 0.131228402961776 0.135513383827327 0.136118299667244 0.135615735337375 0.136859126784983 0.139335920120811 0.136058177108034 0.134482281459940 0.141368736866126 0.135503603128073 1 1 + 19441799 19442201 19442007.636 19438178 19442640 + gene protein_coding_gene FALSE TRUE AT1G52190.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G16180.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32298.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.797515687649547 11.2621808827739 2.34309772564543e-06 0.0166430231452595 10.7239971355522 18.8319776643712 0.797515687649547 0.0302677662374854
AT2G02100_at 8.50593142577417 8.56852889423147 5.45309107766480 5.92935606982789 6.55344689251875 6.6802583335671 3.76024525857561 3.72983031105386 3.60366912430236 3.48819804061426 4.45445315568871 7.21679853487611 4.70987306881375 5.33969974324509 7.53499351612165 4.72079757036625 4.47196886418946 4.65590517358441 3.02567937341503 0.248549718155059 0.252472728415297 0.244359599181227 0.248265296681036 0.254849455799733 0.246079429870089 0.241887354285733 0.24553836638855 0.250880479462805 0.243744543273777 0.246562687045073 0.241887354285733 0.241946885972866 0.2422194128047 0.246948387022945 0.241887354285733 0.241887354285733 0.244661905246885 0.248586228279258 2 2|0 +|/ 528413 528826 528664 528349 529107 + gene protein_coding_gene FALSE TRUE AT2G02100.1 LCR69/PDF2.2 (Low-molecular-weight cysteine-rich 69); protease inhibitor Identical to Low-molecular-weight cysteine-rich protein LCR69 precursor (LCR69) [Arabidopsis Thaliana] (GB:Q39182;GB:Q42011); similar to LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02130.1); similar to protease inhibitor II (GB:AAA91049.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Gamma Purothionin; (InterPro:IPR008177); contains InterPro domain Knottin; (InterPro:IPR003614) 1.01422490578466 11.2609864438198 2.34506860071964e-06 0.0166546772023109 10.7235443635366 10.5278743909707 1.01422490578466 0.0861375997519623
AT3G22600_at 8.4891521728867 8.82748786825812 10.6451664484817 10.6514046014150 7.65340748266514 7.31222427343819 1.924013303308 1.48541981030927 2.64199103291148 5.98982389676507 1.85457112468632 1.79458067047651 2.02051529754491 1.49574453573621 1.82682062912827 1.59070077585201 2.49888616445967 2.27646439030871 1.82000274322507 0.309512212007469 0.304664080800739 0.306006352469299 0.3070900447308 0.305875504343628 0.301925386201298 0.294910464125639 0.304102146644124 0.308607912739799 0.306466811566037 0.298595087061284 0.296378538020541 0.296240376097445 0.298660903562935 0.300573401839921 0.303940527920766 0.305043015663298 0.295751746378674 0.306771171891184 3 3|0 -|/ 8006719 8007275 8007094.4 8006515 8007478 - gene protein_coding_gene FALSE TRUE AT3G22600.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G14815.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE87133.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 1.15993931851651 11.2582726334718 2.34955335940967e-06 0.0166841784051680 10.7225153193544 9.82539683150757 1.15993931851651 0.112589341888541
AT4G04620_at 6.94541944148709 7.08944353606413 8.27644229789001 8.14325431421052 8.45516425832351 7.9997973988267 6.68203428453117 6.68102187276954 6.30260795886671 5.75766107205773 6.44781856282244 6.30749674883671 6.66608329048648 6.76778163645575 6.24668687230574 7.53114068059031 7.19335301674898 6.76870403604115 6.21384928879013 0.177008741492439 0.175172417056941 0.176755938449085 0.181905099242425 0.184545105192764 0.172575926537938 0.170144035121948 0.180266829385944 0.207956154523533 0.190756665176134 0.179972977553448 0.171047783209882 0.179948687804532 0.177007979292278 0.175191563290286 0.178738526862824 0.183052381284858 0.173350721024279 0.181081193054304 4 4|0 -|/ 2328669 2329898 2329044.5 2328447 2330198 - gene protein_coding_gene FALSE TRUE AT4G04620.1|AT4G04620.2 ATG8B (AUTOPHAGY 8B); microtubule binding similar to APG8A (autophagy 8A) [Arabidopsis thaliana] (TAIR:AT4G21980.2); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar to Os08g0191600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061171.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 1.00947255794873 11.2270980956447 2.40176128297564e-06 0.0170525051091271 10.7106614567392 13.9503251148999 1.00947255794873 0.0858047501354577
AT3G11840_at 6.31007568719586 7.07825540938993 7.96233533228381 8.1626194056565 7.38466581308713 6.93354562038569 3.39798889027991 3.32358366035172 4.40033545603663 3.62484323289298 3.39554573824963 4.47873096913924 3.8871095379463 4.15551601294873 3.16151215125437 4.1796628783766 4.77748248452518 4.77367442429245 3.36859553106303 0.287789811641639 0.267825525523469 0.276685534355119 0.272009878887855 0.278912697842936 0.268367126092061 0.270559288380730 0.272216282808992 0.27367111041654 0.27334206069507 0.269008998974482 0.265778040580802 0.268570944317233 0.276740899274835 0.272170357531720 0.265048476350622 0.277147519429217 0.268189059619573 0.269899356579703 3 3 - 3736599 3737077 3736865.909 3736406 3738263 - gene protein_coding_gene FALSE TRUE AT3G11840.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35930.1); similar to hypothetical protein [Nicotiana benthamiana] (GB:BAF02552.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 1.44327258282147 11.2195739585614 2.41455434664921e-06 0.0171409213068627 10.7077913861595 10.2686732346234 1.44327258282147 0.158537280912428
AT1G49660_at 5.49167588738373 5.69376876356314 6.64798977515225 6.5786579109374 6.66535481568469 6.80217711292565 7.42047640682824 7.24622241092212 6.48723979286504 6.76480933707336 8.13017773361257 7.68162268618808 8.2012387493698 7.81747702330126 7.84165312258328 8.75976201133405 8.83451566370151 8.05530839325101 6.69656315571671 0.202509556321608 0.207138364575644 0.206774356701618 0.20910687271812 0.201569243287752 0.205785610401356 0.210073408187695 0.203462110305299 0.206693238923954 0.209128266454384 0.202154008109118 0.201092271708026 0.200379469783664 0.204712043754156 0.204491279294287 0.202266386414437 0.20362645139756 0.220244602921181 0.207301557791431 1 1 - 18382507 18383020 18382811.273 18382365 18383467 - gene protein_coding_gene FALSE TRUE AT1G49660.1 similar to cell death associated protein-related [Arabidopsis thaliana] (TAIR:AT1G49650.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83375.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.86309551543334 11.2086780747863 2.43321481720492e-06 0.0172709587725205 10.7036288898523 13.9756688111593 0.86309551543334 0.05326408734481
AT1G77510_at 10.1295907198854 10.1822116619609 10.8379915997629 10.5685577634635 9.86023985412348 9.2603801769704 7.27657013832912 7.43448854204218 6.43870598439064 6.01825583408387 6.83626320329543 7.23938374604086 7.24108042443742 7.19055440138416 7.19235414500498 7.1385054402316 7.1518459376175 6.64497125032848 5.83402716828179 0.235705280510855 0.235878503510739 0.237474193025868 0.236107521193214 0.239272672041747 0.234741705944712 0.240229692184691 0.233986941549042 0.240704547406332 0.235089813469416 0.232583640066410 0.238059433186458 0.238406686703954 0.232583640066410 0.243008196932752 0.232583640066410 0.237012894149788 0.243010438502719 0.240812196431138 1 1 + 29133506 29134301 29133921.455 29131544 29134506 + gene protein_coding_gene FALSE TRUE AT1G77510.1 ATPDIL1-2 (PDI-LIKE 1-2); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Identical to Probable protein disulfide-isomerase 2 precursor (EC 5.3.4.1) (PDI 2) [Arabidopsis Thaliana] (GB:Q9SRG3); similar to ATPDIL1-1 (PDI-LIKE 1-1), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G21750.1); similar to Protein disulfide-isomerase precursor (PDI) (GB:P29828); similar to putative endomembrane protein; putative (GB:AAA32662.1); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792) 1.17922528632474 11.1722078454500 2.49685071025714e-06 0.0177201494906949 10.6896421354322 16.0319368807979 1.17922528632474 0.117388402425538
AT4G38620_at 5.75917965647276 6.22383837810203 6.76516722933853 7.00741944097678 7.34493203916271 7.10924162235715 5.58982700756573 5.37877364342028 5.52222018176413 5.90086120283767 6.66987508587693 6.97169484552249 6.566050701858 7.01115144288398 6.01296818975308 6.76167956735922 6.09651693546955 6.20483506922758 5.46690197343292 0.222820869724133 0.207958804098062 0.216339359110880 0.214026796132821 0.214378367864729 0.225112228322512 0.207958804098062 0.216616361162578 0.220641629854336 0.215917468474077 0.218787476806922 0.215304733735412 0.215423690136847 0.214977603333101 0.208621468874087 0.212726431265582 0.222327429364439 0.216294674077259 0.209179408193403 4 4 + 18054286 18054830 18054530.545 18053545 18054993 + gene protein_coding_gene FALSE TRUE AT4G38620.1 MYB4 (myb domain protein 4); transcription factor Encodes a R2R3 MYB protein which is involved in the response to UV-B. It functions as a repressor of target gene expression. One of its target genes encodes cinnamate 4-hydroxylase; mutants accumulate sinapate esters in their leaves. Identical to Transcription repressor MYB4 (Myb-related protein 4) (AtMYB4) (MYB4) [Arabidopsis Thaliana] (GB:Q9SZP1;GB:O49774;GB:Q7DLI1); similar to AtMYB32 (myb domain protein 32), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34990.1); similar to GHMYB9 [Gossypium hirsutum] (GB:AAK19619.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.11281871931710 11.1717685262829 2.49762846154276e-06 0.0177231715631074 10.6894731408686 12.4807178433855 1.11281871931710 0.105929720735636
AT3G29180_at 7.04981502514223 7.0022497261313 7.9956467651613 7.94436505101363 8.3564458015524 8.47897050292697 6.96407133906253 6.75909907323634 7.01772430910833 6.77712857762777 7.16126223019097 6.94958846704158 6.44409374884169 7.1418345846764 7.06962573431285 7.25215875701676 7.49840409414318 7.12443123706782 6.24592184587735 0.172217423141501 0.172217423141501 0.180002880959385 0.173672414116947 0.180560491186629 0.181343107754542 0.176757222956200 0.172217423141501 0.185795921272804 0.172217423141501 0.175141695487171 0.183116122775556 0.180820254032609 0.175536048556056 0.178209653713714 0.172217423141501 0.179923291216433 0.175263675517873 0.183161485342971 3 0|3 /|+ 11151734 11152513 11152201.333 11149452 11152797 + gene protein_coding_gene FALSE TRUE AT3G29180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39430.1); similar to Os12g0577600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067115.1); similar to Os03g0759000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051338.1); similar to Protein of unknown function DUF1336 [Medicago truncatula] (GB:ABE78635.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.8249824258637 11.1633424127453 2.51259793574536e-06 0.0178268823541133 10.6862294768473 14.4490494609613 0.8249824258637 0.043061830151083
AT2G05790_at 7.84228165329684 8.42746021732841 4.00044174510823 4.18875500072261 6.65714781444775 6.63394189774363 7.80136514710741 8.10768390052938 8.41212579944022 8.14334546942045 9.33832601817743 9.30580780797723 8.69372692436562 8.89656689658178 9.2880934073244 8.49901501083725 7.08111248553387 8.70837351615892 8.70581790254653 0.195333223403207 0.197186751412743 0.237689791593133 0.259450682427931 0.209905631946883 0.202039692085191 0.206641595572140 0.196202862369066 0.210877842580478 0.197580178479637 0.199775739266359 0.201802410814207 0.199366513881131 0.20948071567752 0.196219239104569 0.195861976455975 0.212826619244895 0.195648131788039 0.194173742533923 2 2 + 2200391 2200889 2200646 2199216 2201481 + gene protein_coding_gene FALSE TRUE AT2G05790.1 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G55180.1); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE77964.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.18433904024640 -11.1345230396066 2.56455629670298e-06 0.0181929623688110 10.6751013703726 15.2807884131215 -1.18433904024640 0.118925895651139
AT1G57590_at 5.56885520661308 5.71750443247314 8.43123802118061 8.42353311784975 7.78632690469449 7.17537137142449 7.80255944544737 7.68144917100789 4.76032718715931 6.32524312248913 6.68355773383281 4.52670978290704 6.82756061052825 6.85854983482754 4.25586596859644 6.11774976911804 7.77350011608666 6.73823114093286 4.54981649743598 0.216594189921485 0.212601074712135 0.218298093694193 0.218857677923005 0.219443694160640 0.216497592480631 0.213551971536014 0.214384687342408 0.239715866104653 0.221672797927327 0.214825375434649 0.225756610015737 0.218105392339356 0.216419369091155 0.232162388975809 0.214439801510826 0.220551130976154 0.22455847549854 0.222051691825100 1 1|0 -|/ 21331159 21332273 21331764.4 21331025 21333428 - gene protein_coding_gene FALSE TRUE AT1G57590.1 carboxylic ester hydrolase similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34280.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) 1.13622265357210 11.1271157906891 2.57810303779299e-06 0.0182864848470657 10.6722326689040 13.0406103198189 1.13622265357210 0.110821255776710
AT2G16790_at 3.66613839088123 4.19381649102878 5.52808922984013 5.60774652321937 6.3580329298973 5.77293972000323 3.93416011218610 4.07581493179028 4.23719974286106 4.44763731367292 5.87714350269238 4.01098606893218 5.78717285496658 6.00113843477624 3.95458498875847 4.83797403522059 5.77972183552212 5.34095287232372 4.62587256703635 0.214992293871881 0.204428136432661 0.208436429254642 0.217133121129689 0.212072084163095 0.218106798892894 0.204428136432661 0.212747059004683 0.21109120038665 0.206313524707432 0.205670338101827 0.204428136432661 0.212753680306006 0.221681165476323 0.21126202294585 0.208816227816231 0.216031865569024 0.210959628987587 0.204428136432661 2 2 - 7291222 7291703 7291430.182 7291039 7292319 - gene protein_coding_gene FALSE TRUE AT2G16790.1 shikimate kinase family protein similar to thermoresistant gluconokinase [Burkholderia thailandensis E264] (GB:YP_441767.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623); contains InterPro domain Carbohydrate kinase, thermoresistant glucokinase; (InterPro:IPR006001); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) 1.30551286778033 11.1097989508081 2.61008443176029e-06 0.0185107187900440 10.6655125115613 9.7098985571087 1.30551286778033 0.139219181961247
AT1G16670_at 8.82535072998177 8.92489691804684 9.43420380187777 9.47258367182633 8.5337784222717 8.36784562816168 7.09961979852374 7.13183491095702 6.47113739086935 6.03739919070381 6.730657119659 6.67850504141879 6.37198050866555 7.35038175454722 6.10919458007944 7.22280456580763 7.20749088833128 7.03631568394591 6.11652389397121 0.240266134612738 0.235978951512559 0.237756956065120 0.240796805839473 0.235698676434656 0.244720008861482 0.238707711638139 0.235535152177313 0.258245171919794 0.247140265220013 0.240946620049863 0.247470203472345 0.242783395529407 0.235488364015273 0.235488364015273 0.245942461205426 0.245935535950486 0.244326939024203 0.243656863489569 1 1|0 +|/ 5698729 5699428 5699201.6 5697317 5699762 + gene protein_coding_gene FALSE TRUE AT1G16670.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G09010.1); similar to Os04g0619400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053898.1); similar to H0313F03.21 [Oryza sativa (indica cultivar-group)] (GB:CAJ86134.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.793370033807875 11.0573783314704 2.70961702226732e-06 0.0192138943048976 10.6450525625649 14.9971491150333 0.793370033807875 0.0345910099963773
AT4G29820_at 6.46943313182536 6.68268243266613 7.54378017291676 7.65846141175797 8.07488227157443 7.93616783752445 5.0312363872194 5.56081944467039 3.75625989001079 4.31546368967408 4.54774738550016 4.01415383697352 4.96996689698376 4.21265903570596 4.19997873235828 4.74608628809863 5.06965372505308 4.24967649454572 4.50679863702196 0.281404041482502 0.261840373956921 0.269556975144182 0.269820855688054 0.267453055563853 0.283956214961469 0.268744585718058 0.268856694113601 0.26991670379676 0.266324917445811 0.266111298174834 0.269331881115015 0.267039755832283 0.261840373956921 0.262173614519188 0.263529283207187 0.276771104912161 0.279890852594947 0.266630771883584 4 4|0 -|/ 14596068 14597207 14596537.7 14595686 14597487 - gene protein_coding_gene FALSE TRUE AT4G29820.1 ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) Encodes a homolog of the protein CFI-25, a polyadenylation factor subunit. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25550.1); similar to Os08g0398800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061747.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047:SF2); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047); contains domain no description (G3D.3.90.79.10); contains domain Nudix (SSF55811) 1.08783981742410 11.0517239390939 2.72060294440467e-06 0.0192890748758291 10.6428350686099 11.2167234054217 1.08783981742410 0.103591244473824
AT1G75900_at 9.59618311581252 9.85332670141111 10.4235076925041 10.4731655829026 11.3469414304684 11.0528740352353 10.6493678896884 10.5417486702298 9.95529293755616 9.89408435680973 11.3472032906866 10.9350936693189 10.9989924281915 11.3502451834149 10.8288864758659 10.0999842833849 10.5398140043323 11.1355464206909 9.32644262320248 0.0864243290152494 0.0858215358839113 0.0882463609593007 0.085202450275373 0.0846661758539058 0.0884552474563177 0.085471344652462 0.0844914931825499 0.0951399210571223 0.0881466538321895 0.0845183932221152 0.0844914931825499 0.0844914931825499 0.0866383508688228 0.0849142326829541 0.085448605826885 0.086061328975262 0.0865774734702774 0.0900353623038229 1 1 + 28503795 28504498 28504127.091 28502721 28504799 + gene protein_coding_gene FALSE TRUE AT1G75900.1 family II extracellular lipase 3 (EXL3) similar to family II extracellular lipase 1 (EXL1) [Arabidopsis thaliana] (TAIR:AT1G75880.2); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE88162.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087); contains InterPro domain 5' (InterPro:IPR006179); contains InterPro domain Lipolytic enzyme, G-D-S-L, active site; (InterPro:IPR008265) 0.921581502310894 11.0505734238856 2.72284433895234e-06 0.0193022435188332 10.6423836159897 20.8070114024525 0.921581502310894 0.0706449451710742
AT1G62800_at 6.18479342789903 5.93438404221359 6.53279915909946 6.42510789099197 6.96968764463887 6.57316845516337 7.03183278309233 6.80911924544101 3.68975138789782 6.20434124610569 7.07787283273017 6.65677993379388 7.2728026054114 7.93223498892545 6.43284877836658 7.24138137362497 7.69732036267139 7.83079994825474 6.1852231895471 0.190322107877092 0.18815841548438 0.192140475717292 0.185364900163844 0.185745786641161 0.190572820955174 0.194896849361123 0.189459709784713 0.223610946302529 0.193152923521915 0.185199721795773 0.188210405268591 0.183765560685076 0.195390738445176 0.190463220475814 0.185213373788214 0.195798624703694 0.184656867153432 0.197662902141299 1 1 - 23257602 23259429 23258697.909 23257368 23261128 - gene protein_coding_gene FALSE TRUE AT1G62800.1|AT1G62800.2 ASP4 (ASPARTATE AMINOTRANSFERASE 4); catalytic/ transaminase/ transferase, transferring nitrogenous groups Encodes aspartate aminotransferase (Asp4). Identical to Aspartate aminotransferase, cytoplasmic isozyme 2 (EC 2.6.1.1) (Transaminase A) (ASP4) [Arabidopsis Thaliana] (GB:P46646;GB:Q9SI69); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G19550.1); similar to aspartate aminotransferase (GB:AAA79372.1); similar to aspartate aminotransferase (GB:AAA79370.1); contains InterPro domain Aspartate/other aminotransferase; (InterPro:IPR000796); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 1.02157078730036 11.0236935400416 2.77579957235892e-06 0.0196748673688800 10.6318117857657 12.8713751031454 1.02157078730036 0.0917566862505576
AT4G18570_at 6.39834741868726 6.50993766913069 4.76026042985551 5.00393679108214 5.99102916634564 5.95425537993743 7.87520605774272 7.70196112568313 7.74031735638947 7.2634528163987 8.18764371349827 8.10770987901918 7.91067532274235 7.64116548305427 7.52767687661721 7.3793485843201 6.88835958695704 7.53529528242597 7.9985363522039 0.231706852152679 0.232307066083931 0.23975561629108 0.247080679912156 0.235443113018645 0.246417998566774 0.237098286871881 0.237728146841415 0.243522952212699 0.233375543472052 0.228160315917644 0.233485036590943 0.230994834039259 0.232478546583015 0.231707274132593 0.231682157961051 0.25772271529299 0.232977852229144 0.232510843198816 4 4|0 +|/ 10233091 10234289 10233529.5 10231229 10234704 + gene protein_coding_gene FALSE TRUE AT4G18570.1 proline-rich family protein similar to CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) [Arabidopsis thaliana] (TAIR:AT3G25690.1); similar to pherophorin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68701.1); similar to Os05g0573900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056385.1); contains domain TPR-like (SSF48452); contains domain FORMIN-LIKE 1 (PTHR23213:SF27); contains domain FORMIN-RELATED (PTHR23213) -0.857096896628583 -11.0191801800435 2.78480297893025e-06 0.0197358987116787 10.6300320903364 13.9317016795131 -0.857096896628583 0.0555924931925767
AT3G29575_at 7.51500032239198 7.78693862895674 8.421500307993 8.10119141781726 8.1751009814491 7.40389946383964 7.51451112480486 7.72905707088881 4.15775378842797 4.68898732414033 6.12167074554997 6.38870787958629 7.20452754369342 7.0462987231712 6.23156737583407 6.98227984125406 7.73969097541226 7.41130124189898 4.57409976062074 0.238700704136789 0.225304182425357 0.252929685390823 0.257886576919500 0.227562945687085 0.247270944359946 0.237670052484976 0.230802516666712 0.259638204747186 0.244439536542271 0.225304182425357 0.230161204815120 0.226385889144484 0.24481949997739 0.230878093960548 0.225527856966786 0.229614049733691 0.229323354461976 0.253462060264979 3 3|0 -|/ 11384904 11385998 11385280 11384693 11386483 - gene protein_coding_gene FALSE TRUE AT3G29575.1|AT3G29575.3|AT3G29575.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13740.1); similar to Os07g0602900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060209.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94628.1); similar to Os03g0419100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050378.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 1.40309408620892 11.0117977259611 2.79959982071464e-06 0.0198379643295839 10.6271182062186 13.5130844973659 1.40309408620892 0.15645232460423
AT3G53310_at 5.74560056050762 6.13611851309867 5.93898061786849 6.66642006769826 7.4721415029811 7.00802604384405 4.22910211553397 4.39146403555105 3.45791707738135 3.46445187270415 4.53028611148234 4.69068443739833 4.77902256977109 5.13958681746052 4.70147577242693 5.15131838114029 5.07352207783373 4.11406404581319 3.5448506498923 0.275853094372403 0.268870121770595 0.273877476144821 0.281097903883355 0.272003453203869 0.298229456356343 0.267835901112567 0.279237929976722 0.279204174003504 0.276685819203102 0.266492378708494 0.266492378708494 0.268594143995897 0.266492378708494 0.28246725795426 0.267872034723901 0.280976378990322 0.278975823273403 0.267655572428693 3 3|0 -|/ 19777912 19778658 19778277.5 19777642 19779577 - gene protein_coding_gene FALSE TRUE AT3G53310.1 transcriptional factor B3 family protein similar to transcriptional factor B3 family protein [Arabidopsis thaliana] (TAIR:AT3G06160.1); similar to Os03g0621600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050679.1); similar to Transcriptional factor B3; Cupredoxin [Medicago truncatula] (GB:ABE81219.1); similar to Os03g0212300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049354.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 1.46462128929918 10.9937165018541 2.83621105899259e-06 0.0200945553529625 10.6199664749445 10.0792657954646 1.46462128929918 0.166297966411206
AT4G12390_at 6.96827730697238 7.41962982867782 5.52738391062655 5.76358712149604 5.20386285063069 6.11788224501433 7.98521285471395 8.55306932459363 7.98965514439174 8.5593774488435 6.86247006050363 7.03572841427103 7.27069462320546 6.91889687500197 6.98325470798024 7.4402595522851 6.89090241386169 6.15303459260582 8.4278655360168 0.211585798563333 0.209950447722322 0.216165602720005 0.207690587492295 0.215002225995917 0.206589786761549 0.217779841890630 0.214873554680625 0.207812607509934 0.207525646505311 0.205601375324 0.205788343953156 0.205601375324 0.205601375324 0.211418899333867 0.208006981134668 0.218354170828814 0.212064667012866 0.209125999659657 4 4 + 7336653 7337145 7336882.364 7336494 7337353 + gene protein_coding_gene FALSE TRUE AT4G12390.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62770.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85625.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -1.72979792579193 -10.9856590282045 2.85269718725044e-06 0.0202085068744821 10.6167725971463 14.3273821126982 -1.72979792579193 0.206029806783323
AT1G64500_at 8.09741611673159 8.23649597065742 8.84720793676464 8.6544878220258 8.5887874182008 8.28750292222125 10.3654304760777 10.3822065623422 10.4579549334449 10.6916037947563 9.19055573488 8.77203792209954 9.906427177601 9.4652932094584 8.66753764215084 10.1905449329500 10.2864832551180 9.61182841396748 10.7415270059861 0.139544957393942 0.129406824035474 0.133206112852455 0.132595870078084 0.137590314199659 0.135018207303991 0.136260652273287 0.134082903703229 0.132168875653419 0.133632584403251 0.128031454754687 0.130816769384152 0.127542175893884 0.127542175893884 0.129005086716307 0.130010124910634 0.134232880864608 0.127644884936338 0.135261001190959 1 1 + 23957503 23958002 23957752.182 23956896 23958155 + gene protein_coding_gene FALSE TRUE AT1G64500.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G10630.1); similar to Os01g0235900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042526.1); similar to hypothetical protein MtrDRAFT_AC139526g15v1 [Medicago truncatula] (GB:ABE80146.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.89745706600835 -10.9785409775665 2.86734985232466e-06 0.0203094390040156 10.6139475600110 19.0032921268396 -0.89745706600835 0.0664714729555346
AT1G06890_at 6.32776422238741 7.03873195550025 6.8698497482179 6.46310027886164 7.7686731384861 7.41744928928405 5.75409122703161 5.34966064887677 4.63729147186949 5.03506479741704 6.49008691641546 6.9188007025643 6.81030060361886 6.70522245676781 6.79066591913253 6.37479958692222 6.81070466403696 6.2998795640866 4.43620996034689 0.247602003750881 0.226400275066350 0.232733447732779 0.237775977678350 0.244031179905011 0.231285254644929 0.241756896746715 0.227016543012959 0.241260290595684 0.241658809253634 0.23358144234224 0.230248700597700 0.226442406898227 0.239830659681738 0.232913420244943 0.231099199500562 0.247719760027487 0.229370857042799 0.228929392101116 1 1 - 2111750 2112535 2112228.818 2111562 2114600 - gene protein_coding_gene FALSE TRUE AT1G06890.1|AT1G06890.2 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G28315.1); similar to Os05g0168700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054756.1); similar to Os01g0167500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042121.1); similar to putative glucose-6-phosphate/phosphate-tranlocat or [Oryza sativa] (GB:BAB41206.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 1.47970412103935 10.9565046829344 2.9132451461464e-06 0.0206316021250088 10.6051806457924 12.3001215443662 1.47970412103935 0.169367613085827
AT3G28950_at 8.12611220468834 8.06570144496573 8.98579509407457 8.80707211617591 9.10804630880675 8.53464625876178 7.5158472573091 7.2174743888196 6.03999646634206 6.7414599574546 7.8313980949409 7.58624470868162 7.92780854925363 7.42801455273641 7.36975543682767 7.7663689494778 7.70482125875798 7.47273626408038 6.61658701947138 0.235034189560974 0.226264750473989 0.235689252209225 0.230795277246618 0.231995437193658 0.235018985241053 0.226264750473989 0.235788415827364 0.260045284504736 0.238007523597183 0.232346273324201 0.229726820318039 0.226640106439952 0.250773503550352 0.229319252192940 0.226264750473989 0.243751582448174 0.240270161755337 0.234087423474649 3 3|0 -|/ 10977611 10978567 10978210.3 10977345 10978729 - gene protein_coding_gene FALSE TRUE AT3G28950.1 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative [Arabidopsis thaliana] (TAIR:AT3G28940.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); similar to predicted protein [Asper (GB:XP_001216716.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 1.14874255813214 10.9305835979710 2.96827968287421e-06 0.0210183884344323 10.5948272899514 15.3460408631672 1.14874255813214 0.116527016613870
AT4G20780_at 5.59855456120757 5.91002658696503 4.96174220310955 5.05515787634124 6.31648661497236 6.49040565694675 4.14053678609855 4.39508442288246 4.80175971871425 3.39278669201626 6.22818785835311 6.54268854477679 4.96029001347732 6.30170283825272 4.38286096927991 4.78610516079039 3.62804519424917 4.72685017483253 3.82759829585791 0.272267929660217 0.253600759975541 0.257978568552853 0.254678856897469 0.25657022481989 0.257851488509807 0.255944064421649 0.253053469295943 0.258862865476476 0.257865190824647 0.251900105513077 0.252411473598527 0.253607942577353 0.273216687560758 0.260939756253327 0.251900105513077 0.257984824916517 0.251900105513077 0.251900105513077 4 4 - 11133480 11133829 11133661.727 11133197 11133981 - gene protein_coding_gene FALSE TRUE AT4G20780.1 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G44460.1); similar to putative calmodulin-like protein [Populus x canadensis] (GB:CAG27612.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.941053636971381 10.9086972789741 3.01564847245832e-06 0.0213507911850049 10.5860508972681 9.95948579512259 0.941053636971381 0.0775438702943294
AT1G12750_at 7.02629702541779 6.55447892718576 5.15739576775828 4.86452707299076 5.96709256406677 5.96051275128044 7.34184771427576 7.22767037675014 7.4261951773634 7.7897354968579 7.38724160080078 8.01616982747039 7.13441454124112 7.17021638177732 7.24803691202426 7.10093084637415 6.61451828334446 7.07905746839969 8.03481395645153 0.170678855855273 0.165863040079769 0.174123069120672 0.177592585428234 0.164819703660988 0.174580925773943 0.169912053226892 0.167538554421883 0.166702227198113 0.174507908937728 0.161357933176704 0.177461310023658 0.163551280418760 0.166990433380977 0.175298202076861 0.168703810029146 0.176022210404220 0.161591514187850 0.16784260798787 1 1 - 4345117 4345829 4345436.545 4344983 4348326 - gene protein_coding_gene FALSE TRUE AT1G12750.1|AT1G12750.2 rhomboid family protein similar to ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2), serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G63120.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -1.04080822471427 -10.8730309609848 3.09465247006841e-06 0.0219070448356143 10.5716805001517 13.7470134964174 -1.04080822471427 0.0981182018365755
AT2G28950_at 8.67712239170964 9.05290194017597 3.84223756435726 4.63249332704158 6.60103557272927 7.07195076403176 8.21528064284877 8.76394042525436 9.95368305863783 9.4194527388608 9.95431160372488 10.6497085036960 9.35607366337541 9.69261216088842 10.5102989388365 9.45393962588908 7.2604415877022 9.57536497711249 9.7566471717174 0.160878091507663 0.156937506569897 0.186590397113976 0.208085383202493 0.196401923744876 0.181421766403894 0.170253898305491 0.156937506569897 0.158123007739175 0.159302143740000 0.159527312988419 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.156937506569897 0.195689740803465 0.156937506569897 0.161784880812647 2 2|0 -|/ 12438961 12440063 12439533.7 12438418 12440672 - gene protein_coding_gene FALSE TRUE AT2G28950.1 ATEXPA6 (ARABIDOPSIS THALIANA EXPANSIN A6) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A6 precursor (AtEXPA6) (Alpha-expansin-6) (At-EXP6) (AtEx6) (Ath-ExpAlpha-1.8) (EXPA6) [Arabidopsis Thaliana] (GB:Q38865;GB:O81065;GB:Q8LDV8); similar to ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) [Arabidopsis thaliana] (TAIR:AT2G39700.1); similar to Expansin [Brassica napus] (GB:CAA04385.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -1.64685790835472 -10.8696653869243 3.10222550709467e-06 0.0219575521392161 10.5703200848480 16.7403810980478 -1.64685790835472 0.196438244429977
AT3G11230_at 7.26062010614063 7.2176682723319 7.6455492196616 7.34682416592709 7.54048816903781 6.61963459458653 3.63279933309376 3.65105790094937 4.9357493879597 4.11798077797763 5.61208386540373 5.17696496191185 4.92645877513763 5.96756474629682 5.6043883811982 5.46748400569956 5.02032731581334 5.44800119139489 3.956010386096 0.247266958088464 0.2442369289343 0.246179657010104 0.245997135630533 0.256867720825127 0.241458408644242 0.245129855484934 0.245245082216161 0.246432817629237 0.251070297337245 0.241458408644242 0.241458408644242 0.248125065639726 0.243395248442555 0.241458408644242 0.242986787987447 0.253800002924554 0.245564158352565 0.241458408644242 3 3|0 +|/ 3516831 3518164 3517595.25 3516583 3518391 + gene protein_coding_gene FALSE TRUE AT3G11230.1|AT3G11230.2 yippee family protein Identical to Protein yippee-like At3g11230 [Arabidopsis Thaliana] (GB:Q9C777;GB:Q8L918); similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT2G40110.1); similar to Protein yippee-like (GB:P59234); contains InterPro domain Yippee-like protein; (InterPro:IPR004910) 1.45695830276012 10.8667822591094 3.10872935283185e-06 0.022000477629991 10.5691540786248 11.2340748899001 1.45695830276012 0.167727933256716
AT4G16155_at 6.51467356446901 6.63658798742897 4.56440026174808 4.00112903303395 4.71924766947237 5.03947268695435 7.61491750120266 7.49041772193674 6.83739216784288 7.64173491866859 7.53406133733939 7.88624770774215 6.7487529818294 7.12349808458322 8.53294347271541 6.83667267780739 7.02274429931214 7.48195758638775 7.06717093365161 0.229206420332373 0.228670042905603 0.241603582127201 0.253286258158345 0.241586165994470 0.242955928036943 0.242587521767586 0.239036143436183 0.258997678667702 0.231424676383248 0.228670042905603 0.229077738338914 0.228670042905603 0.234766495608859 0.233912745625023 0.237021607925711 0.246312965384860 0.238957474693100 0.239260615048111 4 0|4 /|- 9153609 9154582 9154080.875 9153379 9157278 - gene protein_coding_gene FALSE TRUE AT4G16155.1 dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) similar to LPD1 (LIPOAMIDE DEHYDROGENASE 1) [Arabidopsis thaliana] (TAIR:AT3G16950.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -1.13466317627346 -10.8191554263874 3.21839037276735e-06 0.0227733302777018 10.549811856727 13.1115853575402 -1.13466317627346 0.116112052959808
AT3G56400_at 11.6907990244044 11.9346096704678 12.7397432864554 12.5948814499862 11.5807646544382 11.2344090127443 10.1922778446792 10.0967987134921 10.4559030362905 9.07834827868771 10.8256868649736 10.5462636509650 10.2681542142856 10.8588151191217 9.65150743874562 10.5224759716179 10.4095519572965 11.3748423294258 9.67677639469188 0.0888961812758214 0.0894149609935947 0.0897448933321936 0.0905958865075164 0.0909241402075314 0.096542686297177 0.092490151083836 0.089670349610285 0.101619383562914 0.0984786116344823 0.0948234162811028 0.0888961812758214 0.0888961812758214 0.09119320449695 0.0942264874807705 0.0888961812758214 0.0921990812625358 0.094850995764267 0.0928156563915688 3 3 - 20920082 20920754 20920352.818 20919907 20921460 - gene protein_coding_gene FALSE TRUE AT3G56400.1 WRKY70 (WRKY DNA-binding protein 70); transcription factor member of WRKY Transcription Factor; Group III. Function as activator of SA-dependent defense genes and a repressor of JA-regulated genes. WRKY70-controlled suppression of JA-signaling is partly executed by NPR1. Identical to Probable WRKY transcription factor 70 (WRKY DNA-binding protein 70) (WRKY70) [Arabidopsis Thaliana] (GB:Q9LY00;GB:Q8LB71); similar to WRKY54 (WRKY DNA-binding protein 54), transcription factor [Arabidopsis thaliana] (TAIR:AT2G40750.1); similar to DNA-binding protein 3 [Nicotiana tabacum] (GB:AAF61863.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.939490622196208 10.8006689571508 3.26210833370793e-06 0.0230794164609836 10.5422628996022 21.6551211720138 0.939490622196208 0.0792104823098986
AT4G21650_at 4.12599652251762 4.05524557552855 3.90070471102034 4.16334032358977 4.12417618632453 3.94573552904096 4.21891492220643 4.40445073776280 4.29024963029706 4.76290365137773 6.71428518253152 6.60032074290942 6.15794671899292 6.42965301607022 6.57846316183666 7.33851825869853 5.27396372432628 6.88236291397225 4.68996282169909 0.197531366283608 0.196821293158569 0.196874443569733 0.198352053313876 0.199360685737327 0.196275926244786 0.201103310464197 0.198208013103707 0.195301155590924 0.196709014398727 0.204876191944365 0.196070345322492 0.200897489673537 0.209688724085538 0.207376251469633 0.20289097564004 0.201100353134446 0.217322302593473 0.194906281253783 4 4 - 11501403 11501845 11501690.364 11501210 11504690 - gene protein_coding_gene FALSE TRUE AT4G21650.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21640.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32960.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G21630.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.874118880891326 10.7772181868207 3.31851873612783e-06 0.0234752015393683 10.5326534013131 9.6563095215198 0.874118880891326 0.0648083982535354
AT3G07350_at 5.97597518753023 6.72208237086955 3.15300078901244 3.49056707378717 5.12052107178018 4.99365094279343 5.51452551129929 6.0513022446995 5.01915837106328 5.72112571458135 4.46887889250847 4.53870486106238 4.26859571035637 4.30708848706403 4.13457195502843 3.01285932337546 3.92224995408941 4.26583588252697 4.74967175704293 0.267659873918687 0.275791389523473 0.277993712052093 0.274461546042313 0.256475868765940 0.263024372988753 0.2747724999085 0.265572601607098 0.267604445439305 0.2635677744219 0.258996837410152 0.256475868765940 0.259122104305627 0.256475868765940 0.262870480763497 0.272364306989097 0.257993914333929 0.259248637186455 0.257381455776225 3 3 + 2348035 2348535 2348300.182 2347474 2348797 + gene protein_coding_gene FALSE TRUE AT3G07350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25240.1); similar to Os01g0915000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045184.1); similar to uncharacterized plant-specific domain TIGR01615 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93251.2); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -1.46250342011704 -10.7578343153646 3.36596530424542e-06 0.0238074725969278 10.5246821269426 9.76678652271178 -1.46250342011704 0.170864838252124
AT3G13310_at 8.5905302309594 8.56822858038196 8.63244600152184 8.48968270831765 9.04149076802655 9.424447972587 3.56583950933903 4.98784339064727 3.31280842891081 3.08702788260247 4.23377158130422 6.24511588945922 4.90506927349691 5.24335014814152 4.55388433778146 6.24191715603561 3.91037960827036 2.93613008905924 3.15350692611342 0.222514539464959 0.219232087635698 0.227426809618287 0.221472614222194 0.218966694029481 0.222553668989421 0.218966694029481 0.230372015838351 0.229388677327424 0.230609973719396 0.219034935176000 0.224372123801551 0.222757321249664 0.225637445465583 0.228314160846577 0.220254148463904 0.225558341583061 0.227146847289666 0.224955983881487 3 3 - 4310887 4311282 4311103.818 4310615 4311448 - gene protein_coding_gene FALSE TRUE AT3G13310.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT2G17880.1); similar to Os06g0716100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058589.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 2.03408047467468 10.7493724929305 3.38691359708039e-06 0.0239522529585525 10.5211942993421 11.6466386483822 2.03408047467468 0.256075879743510
AT3G10250_at 8.3369151615453 8.3991778354884 9.0935965611772 9.05129378380713 9.3694148788931 9.19562665308037 8.15491066094288 7.71191643253518 6.16292736894701 6.97598930975291 7.4594515919225 6.80223657472662 7.53928403106529 7.69855481612115 7.36089659979552 8.03726440995846 8.51792055099537 7.39868331749147 7.03712699388138 0.217260645008904 0.210854150264247 0.223528941690582 0.215734835539121 0.210854150264247 0.217727265166775 0.212206649882949 0.213344508971148 0.260935312530699 0.216627137726732 0.217380957752445 0.211542744371445 0.216802363411315 0.216350050277410 0.216479188676542 0.210854150264247 0.225121452479103 0.226600754446789 0.216664913440990 3 3 - 3168656 3169249 3169045.727 3167956 3170934 - gene protein_coding_gene FALSE TRUE AT3G10250.1|AT3G10250.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04090.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10374.1); similar to Os02g0137100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045827.1); contains InterPro domain Conserved hypothetical protein 1589, plant; (InterPro:IPR006476) 0.951595771130308 10.7139529460878 3.47618552713235e-06 0.0245801078623529 10.5065415932387 15.8276736846187 0.951595771130308 0.0833743533332367
AT2G04450_at 8.39665646314771 8.55984344444145 9.92978047174662 10.1000291354855 6.98208355320598 6.9613775113349 2.52933209386819 3.15496081604651 4.14729010637136 3.56766981479848 3.51065998522731 3.27082450033326 2.7892412371384 2.89302299318606 2.7840431755548 3.37191469225234 3.8748654213635 2.83622373241211 3.56799129294202 0.360583547140481 0.358291095220466 0.359591415016283 0.357967374177681 0.369954944022032 0.358624299678583 0.339101615517703 0.342115847969718 0.340854497426567 0.340992425286823 0.340005002917079 0.339101615517703 0.340198188101747 0.339101615517703 0.345941477237626 0.339101615517703 0.348832377220004 0.339101615517703 0.339101615517703 2 2|0 +|/ 1544143 1545243 1544698.8 1543317 1545459 + gene protein_coding_gene FALSE TRUE AT2G04450.1 ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6); ADP-ribose diphosphatase/ NAD binding / hydrolase Identical to Nudix hydrolase 6 (EC 3.6.1.-) (AtNUDT6) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (NUDT6) [Arabidopsis Thaliana] (GB:Q9SJC4); similar to AtNUDT7 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 7), hydrolase [Arabidopsis thaliana] (TAIR:AT4G12720.3); similar to Nudix hydrolase 5 (AtNUDT5) (GB:Q9SJC6); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) 1.11924259635673 10.6910388245366 3.53533050217241e-06 0.0249947866503590 10.4970161859900 10.5404245387700 1.11924259635673 0.115759812403119
AT1G15470_at 7.2696558149278 7.36390358856042 6.40599778429027 6.56726598003063 6.19686385404393 6.33395398150114 7.75250861755466 7.63786309219814 6.36254743826414 6.72421399172257 6.30160236185748 6.70708790442168 5.42389098917022 6.12006784361566 6.5592370374094 6.05643965722734 5.43248593483845 6.36487852791215 6.65620444708128 0.205220711495945 0.205508332116056 0.211313654491515 0.202314724292678 0.208769636662250 0.207149726818590 0.206000209392880 0.202314724292678 0.205446168587745 0.202314724292678 0.209970657905936 0.202314724292678 0.213930859817336 0.210446694893825 0.203677187850397 0.203606054585484 0.208597795618329 0.208310122082732 0.216035930351077 1 1 + 5316907 5317595 5317329.091 5315502 5317858 + gene protein_coding_gene FALSE TRUE AT1G15470.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); similar to Os02g0205400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046249.1); similar to Os06g0598900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057997.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.795119860988273 -10.6909422679906 3.53558208426789e-06 0.0249947866503590 10.4969759705388 13.2918515430113 -0.795119860988273 0.0447363454845875
AT1G51610_at 8.85939331794371 8.7573328881712 8.17148456485409 7.73332966362359 8.65565078919857 8.45718238738472 7.07311028220303 7.0400798088776 5.95054820916016 6.07148420049514 7.45311343679949 7.87756186957938 7.37922565318558 7.63916326044697 7.53192959992887 7.00960808530796 7.40321435387672 7.20623907892703 5.5040174457468 0.203152043270035 0.203035687119195 0.200074017598820 0.214273807863004 0.203326914930363 0.197121752248341 0.204959327289401 0.205778070576417 0.209065829138061 0.219544874994545 0.204050908538672 0.201716040026313 0.197037954243404 0.207625977849484 0.197523549714403 0.201566337562823 0.202000161077202 0.211066142549818 0.218157543603521 1 1|0 +|/ 19142016 19143243 19142640.125 19140069 19143586 + gene protein_coding_gene FALSE TRUE AT1G51610.1 cation efflux family protein / metal tolerance protein, putative (MTPc4) Identical to Metal tolerance protein C4 (AtMTPc4) (MTPC4) [Arabidopsis Thaliana] (GB:Q8H1G3;GB:Q949W1;GB:Q9C531); similar to Membrane protein HUEL (cation efflux superfamily) (ISS) [Ostreococcus tauri] (GB:CAL50050.1); similar to Os04g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052402.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.958711537877744 10.6905448732022 3.53661772237726e-06 0.0249968140617624 10.4968104502498 14.733207230644 0.958711537877744 0.0852857150576193
AT1G06460_at 11.8433592742686 11.8873809880117 12.2109013512501 12.1721396405574 12.4109275511433 12.3335413572083 11.5229388082939 11.3797321721721 10.8764150242497 11.2017168505087 11.8998851021072 11.6154205843474 11.9154972798795 12.0199521455383 11.6842761891884 11.7891886841375 11.9424334900489 11.8200484032204 10.7654853096908 0.0672530142470877 0.063841946640619 0.0680577607378923 0.065696893317583 0.0677613483645031 0.0656350777513637 0.0689483146649301 0.0682352343871625 0.0754904718617208 0.0642434187887964 0.0655031736006628 0.065582177142666 0.0640702963420575 0.0671811575043098 0.0658794775467558 0.0654045101814198 0.0784871793013277 0.0675245033797463 0.067800563220915 1 1 - 1967645 1968561 1968212 1967086 1969560 - gene protein_coding_gene FALSE TRUE AT1G06460.1 ACD32.1 (ALPHA-CRYSTALLIN DOMAIN 31.2) ACD32.1 encodes an alpha-crystallin domain containing protein with homology to small heat shock proteins. similar to AT-HSP17.6A (Arabidopsis thaliana heat shock protein 17.6A) [Arabidopsis thaliana] (TAIR:AT5G12030.1); similar to low molecular weight heat shock protein (Hsp17)-like [Blastopirellula marina DSM 3645] (GB:ZP_01091157.1); similar to Small heat shock protein [Rickettsia felis URRWXCal2] (GB:YP_247467.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.755745002172622 10.6822506335304 3.55831021150734e-06 0.0251465782647223 10.4933532883351 23.3619702076756 0.755745002172622 0.0299425304178407
AT3G14990_at 10.0965489783968 10.0613892054007 10.3581781340541 10.3906633570673 10.4453234031305 10.0971630731042 7.65448422283516 6.89413321936188 6.15602336806259 7.15955295466042 7.17582357915408 8.30498360748869 7.81459249047227 7.48244709279754 7.57407384775728 8.81816583247369 7.62081520623086 7.90152225328872 7.41373694936145 0.20470797598506 0.200964770048221 0.200964770048221 0.201543950471076 0.200964770048221 0.201765490517507 0.202580990893654 0.205827900381119 0.226216235085354 0.205502616203738 0.200965962567141 0.208161378846658 0.200964770048221 0.206432426018669 0.204427384922136 0.200964770048221 0.203689307026170 0.206642241565501 0.207118239123543 3 0|3 /|+ 5048884 5049594 5049276.875 5047407 5049884 + gene protein_coding_gene FALSE TRUE AT3G14990.1|AT3G14990.2|AT3G14990.3 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative|catalytic similar to DJ-1 family protein [Arabidopsis thaliana] (TAIR:AT1G53280.1); similar to ThiJ-like protein [Brassica rapa subsp. pekinensis] (GB:AAP96742.1); contains InterPro domain DJ-1; (InterPro:IPR006287); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) 1.28648749167672 10.652446572297 3.63748782714009e-06 0.0257024889865719 10.4808910511190 16.8728974888702 1.28648749167672 0.144957507937306
AT4G12600_at 7.60173937516189 7.70070326673136 6.09854593950655 6.59385495747273 5.82293359513347 6.42478125130643 7.78965608868337 8.01412255882867 6.94445015961364 6.99103297336665 6.00485751519707 6.8905637570604 5.39005989259937 6.06842057619146 6.55454093776923 5.42299585496882 5.98049653555292 5.23140791459033 6.85279689279298 0.188766846858390 0.188316244790189 0.183268639379138 0.183268639379138 0.199903899888829 0.195028817505938 0.187761101931549 0.191080500281903 0.191150523970403 0.185962211636024 0.202175549188802 0.185698671759427 0.190499448604138 0.191004718491131 0.191530915162523 0.188000666945096 0.192488896636794 0.196396765303917 0.187205031583717 4 4 + 7453324 7454179 7453860.182 7453199 7454478 + gene protein_coding_gene FALSE TRUE AT4G12600.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); similar to ribosomal protein L7 [Hyacinthus orientalis] (GB:AAT08750.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -1.26401759438154 -10.6443563398207 3.65931684547919e-06 0.0258530735133105 10.4774975235218 13.4419644032275 -1.26401759438154 0.141411253222686
AT1G28230_at 8.79760986369154 8.99684112118747 9.48890296788105 9.23640204705824 9.4520269194377 9.02411771712234 8.69104044304447 8.5812137450632 5.91969623142437 7.85261509738018 8.00013338151216 8.08242921046216 8.76548698889482 8.42695217055312 8.0281351169555 8.96067704761412 8.9440739959443 8.52597789869786 7.23161803706857 0.159082814650043 0.153833572169733 0.153453546936067 0.156435111695307 0.158174485207719 0.155609541100013 0.155696006554956 0.161596907684831 0.203983976544921 0.164017836231628 0.167478279641035 0.159166100627741 0.16290175268753 0.162529856182575 0.157879858290371 0.153453546936067 0.159187337298397 0.161476223289430 0.175187898518698 1 1 - 9862199 9863960 9862875.273 9862060 9864593 - gene protein_coding_gene FALSE TRUE AT1G28230.1 PUP1 (PURINE PERMEASE 1); purine transporter Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. similar to ATPUP2 (Arabidopsis thaliana purine permease 2) [Arabidopsis thaliana] (TAIR:AT2G33750.2); similar to Os09g0467300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063424.1); similar to Os09g0467400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063425.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD19737.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.999554778666525 10.6328294460698 3.6906705287021e-06 0.0260708966147516 10.4726545468886 16.7675408605376 0.999554778666525 0.0945673670942225
AT1G11850_at 6.0939598858348 6.0881483183674 2.72496300491953 2.46471285212095 4.27934450957093 3.93648622246642 5.78213490949124 5.1779793425563 6.59427781260442 6.05710402901464 7.06564041080585 8.62203980957138 5.78418897592833 5.87976828221866 8.11649574740478 6.45318206019011 3.86000048806522 5.61857378136913 6.42287713283184 0.293385884791802 0.296807557465119 0.328191349628781 0.320218254732673 0.285547024827108 0.294916581824315 0.285608358855153 0.288856842181575 0.288143531695421 0.280990441916041 0.285268935765715 0.306623760114455 0.280170919563584 0.280170919563584 0.312134549218966 0.283514932331254 0.300840792152814 0.287542103054389 0.281939826765005 1 1 + 3999240 3999518 3999333.273 3999198 3999875 + gene protein_coding_gene FALSE TRUE AT1G11850.1|AT1G11850.2|AT1G11850.3|AT1G11850.4 |unknown protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001190956.1); similar to PREDICTED: similar to CG5812-PA [Tribolium castaneum] (GB:XP_969409.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to Os07g0688700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060703.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1); similar to putative glycine-rich cell wall protein precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC21356.1)||similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: similar to keratin 7, partial [Gallus gallus] (GB:XP_001236709.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) -1.18363954858288 -10.6178299340246 3.73191775308373e-06 0.0263585350900304 10.4663386187083 10.9600023902965 -1.18363954858288 0.128378065223189
AT3G15520_at 7.01504951684444 6.70097804712759 5.13883508618981 5.02942491802003 5.48037835927458 5.59430160898513 7.74887500120517 7.65742131290016 7.60504337040248 8.13060763554334 8.70692758355466 8.7909572456874 7.16802888430241 8.06119320185046 8.94438878216427 8.08134934300372 6.90532606569809 8.28363434254734 7.82500302730028 0.204069979770365 0.202709079016938 0.209812964906717 0.210221621070969 0.219275582822845 0.222056828637080 0.198181180126038 0.207220330013487 0.206329122001171 0.199859245869184 0.199452877304705 0.205961631117474 0.209641489481764 0.196872790944305 0.203656807553216 0.196872790944305 0.207032371933193 0.200922710686857 0.199057038033486 3 3|0 -|/ 5249779 5250787 5250361.111 5248936 5252513 - gene protein_coding_gene FALSE TRUE AT3G15520.1 peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT3G01480.1); similar to Peptidyl-prolyl cis-trans isomerase CYP37, chloroplast precursor (PPIase CYP37) (Rotamase CYP37) (Thylakoid lumen PPIase of 38 kDa) (p38) (TLP38) (GB:P82869); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.852835819858138 -10.6106440377165 3.75185955957537e-06 0.0264956322097213 10.4633072134942 14.2812964940766 -0.852835819858138 0.0628628675454847
AT1G02870_at 6.37140739723357 6.28738861817937 4.95080240552386 5.15575525404889 5.44569462455904 5.48715262799258 5.66930788738325 6.19341859806983 5.06854450143065 4.91340979132584 3.97960799352051 4.04652697471168 3.65326404684477 3.66615372770506 4.38754559344148 3.79346667077224 3.56388004172196 4.03577350911196 5.17992261151502 0.227052186419164 0.232533225892005 0.246135738778465 0.233371273563731 0.238460758427356 0.257256594389111 0.240256646226935 0.235579037547811 0.238770864390235 0.225207239506492 0.227192816630321 0.225207239506492 0.228274854592346 0.245618746893399 0.225207239506492 0.230444916257121 0.237868676307583 0.227690880860154 0.232355898563050 1 1 - 637458 638548 638238.727 637214 638677 - gene protein_coding_gene FALSE TRUE AT1G02870.1 similar to hypothetical protein MtrDRAFT_AC161032g9v1 [Medicago truncatula] (GB:ABE85046.1) -1.01685552277360 -10.5897948730627 3.81039206550467e-06 0.0269051783745285 10.4544913037708 10.1674840705334 -1.01685552277360 0.098728501447517
AT2G32680_at 9.54554099323172 9.73404948288625 10.6990111002227 10.7321807221363 9.53404015795769 9.6412161461428 3.66927626403199 4.0632098656431 8.69588979811246 5.61538979539319 4.85296980464116 6.10328247183488 5.56561292932417 5.57095435681618 5.0856681806262 6.10624166376689 4.88665726010372 5.13272955296403 6.64280205057622 0.311121040850425 0.311528590122055 0.312635040014757 0.315028612038482 0.308487695579452 0.309529813561330 0.311683452802146 0.320555912974564 0.306485184898898 0.309386529224645 0.317922506215675 0.306485184898898 0.306485184898898 0.306485184898898 0.311847450628419 0.306485184898898 0.329201213679266 0.306485184898898 0.306485184898898 2 2 - 13867133 13867592 13867356.636 13866846 13869691 - gene protein_coding_gene FALSE TRUE AT2G32680.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33020.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.913456763157813 10.5632928511334 3.88626422101763e-06 0.0274370254003845 10.4432407678323 14.6511697959667 0.913456763157813 0.0780294343539933
AT1G20070_at 10.0229538761547 9.9173064795941 11.4634587885936 11.3839828731373 11.9539409954712 11.4782151460141 12.0424635717251 12.1045987841215 9.67060127285342 10.5639550835640 11.3153451387658 10.7561123684095 11.7746307725356 11.5185997400169 10.6472664434729 11.6806850891456 11.9686365333298 11.4107444881709 9.85453496542228 0.0766906435420046 0.0794692787427521 0.0732988425354031 0.07627756025178 0.0745223301856962 0.0752655365267213 0.0741489533873358 0.0734158753919716 0.092200055465697 0.0766089487824719 0.0724424464511342 0.0723375817620669 0.0717514288530009 0.0796995810420966 0.0752743670267367 0.0724374216133728 0.0760876675811948 0.0735992305102583 0.0735715335005526 1 1 - 6958239 6958719 6958471.727 6958001 6959114 - gene protein_coding_gene FALSE TRUE AT1G20070.1 unknown protein 0.951187118678078 10.5619973226953 3.89001596583821e-06 0.0274596227028519 10.4426895181025 22.0027149038568 0.951187118678078 0.0861203299560378
AT3G49260_at 8.25610327399293 8.28939201864577 4.64371280479036 4.37471286521241 6.3753602306192 6.52463669501614 7.22457305038844 7.51664054779552 8.65505366378402 7.93560071582455 9.48882404377867 9.96683257872213 9.03847185504834 9.08419531314404 9.6325215516984 9.00589593160645 6.96249481059694 8.74493729581543 8.71124381451074 0.174234394146238 0.169448389492314 0.187708157580689 0.193733968260232 0.174768704264305 0.183622455801581 0.177245559205402 0.175709772775175 0.176776568384345 0.181961838422027 0.171072474193829 0.173772949381199 0.169069687917114 0.173783272876195 0.175498488630008 0.175357501836883 0.182845138306693 0.169069687917114 0.173692716393873 3 3 + 18276288 18276820 18276562.909 18273415 18277006 + gene protein_coding_gene FALSE TRUE AT3G49260.1|AT3G49260.2 IQD21 (IQ-domain 21); calmodulin binding similar to IQD3 (IQ-domain 3), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G52290.1); similar to IQ calmodulin-binding motif, putative [Medicago truncatula] (GB:ABE77889.1); similar to Os08g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060851.1); similar to Os02g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046615.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.892757982975636 -10.5502142328715 3.92432419282986e-06 0.0276978801529932 10.4376703130895 15.3628853044365 -0.892757982975636 0.0736359274855597
AFFX-Athal-Actin_3_f_at 10.4425622130867 10.605445828508 11.1392925175382 11.3390214644017 11.0968746962604 11.0504580078298 10.4567274029161 10.7721519449670 10.747059475048 10.7605482480066 12.1442456237192 11.9722739840298 11.9530318416219 11.9070917812934 12.0794411554253 11.8517222004744 11.6101865058827 11.8454106300760 10.7317212308123 0.0962077341070996 0.0903613029113554 0.0961052954786268 0.0875269964615041 0.087585871065636 0.100492333575670 0.0878395315750105 0.0897585895488421 0.095881637377012 0.0886434655850628 0.090589629630129 0.0912811512375993 0.0862661373978748 0.0916975696968426 0.0904891610480265 0.0904116145250746 0.100814543311233 0.0870768844379529 0.0910718515880679 NA NA NA NA NA FALSE FALSE 0.88058615241558 10.5436242280753 3.94365848112582e-06 0.0278303979013049 10.4348588798917 22.1962509844073 0.88058615241558 0.0709460542461477
AT2G43200_at 4.56162264984808 5.00427540403507 3.37681729993146 3.47602426854061 4.23033112223463 4.09076882752766 5.32704748832903 4.90033452557625 5.21545669698627 5.2013622017163 4.92952213602437 4.39668229273249 5.14413165999976 4.39758067317129 4.43216072011632 4.45468078083557 4.19836284831898 4.1190281409834 6.06572550589157 0.223138228542218 0.227322884454024 0.223661891240149 0.228364469047916 0.220038104886858 0.234759942006159 0.220741860082854 0.23052913826546 0.229698002009028 0.233933128149274 0.220038104886858 0.223616726453381 0.232378989312056 0.222393808348457 0.223161857196624 0.221653584085155 0.233912114178722 0.241362479927275 0.231377255024196 2 2 + 17966869 17967478 17967101.545 17965307 17967613 + gene protein_coding_gene FALSE TRUE AT2G43200.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Os10g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065036.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Os06g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056546.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -1.06999872453190 -10.4983087050424 4.07951058385918e-06 0.0287850266797104 10.415442260714 9.37250276061326 -1.06999872453190 0.110449699926187
AT4G20890_at 8.70489309415839 8.8068146127818 8.92008863576452 8.9572611337047 9.35091254830503 9.06027055988885 8.60285825194056 8.45036422424753 6.74570563231448 7.49307649127311 8.64963825541799 8.77830656973237 8.33238896124532 8.42403355214646 8.56485617248203 8.01970887601576 8.07797876187707 8.1250962067333 7.17706980658369 0.199032807545454 0.199766732258398 0.201639726210046 0.202448586987426 0.204269769563277 0.201576084494294 0.201348547333374 0.201579416060267 0.240755721602742 0.209438152717667 0.202431440298521 0.196709503404593 0.203214747459534 0.196709503404593 0.20388563915986 0.199182401140071 0.20440504013026 0.204617585138425 0.206748162617966 4 4 + 11183272 11183795 11183490.818 11182103 11184083 + gene protein_coding_gene FALSE TRUE AT4G20890.1 TUB9 (tubulin beta-9 chain); structural molecule tubulin 9 Identical to Tubulin beta-9 chain (Beta-9 tubulin) (TUBB9) [Arabidopsis Thaliana] (GB:P29517); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB6 (BETA-6 TUBULIN) [Arabidopsis thaliana] (TAIR:AT5G12250.1); similar to TUB4 (tubulin beta-4 chain) [Arabidopsis thaliana] (TAIR:AT5G44340.1); similar to beta-tubulin (GB:AAA32757.1); similar to Tubulin beta-7 chain (Beta-7 tubulin) (GB:Q41784); similar to Tubulin beta-3 chain (Beta-3 tubulin) (GB:Q40665); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.83189214151645 10.4953926455805 4.08842911004504e-06 0.0288438673713677 10.4141877537589 16.6117419973556 0.83189214151645 0.059822117422827
AT3G47600_at 3.51209919843382 4.32333967847039 5.42915999353895 5.95818084346182 6.3700345710832 6.42231475269606 4.57852015207412 4.41607235618247 3.33581767485050 3.91477373413441 4.7642306034798 4.01368664069323 5.40795853593225 4.36114674567252 3.90377611763624 4.82235897415207 5.38114325958285 5.03824701787927 3.86656259164572 0.225892418723305 0.218532576266596 0.23297285901947 0.227842114721904 0.219078440995273 0.234355031712963 0.220141249004042 0.220939008082567 0.250474209109787 0.226778232997943 0.227296357291661 0.22256531056572 0.223351727181499 0.225526225059621 0.223363128478137 0.221471114779635 0.23664184576033 0.225069945354961 0.222272160522678 3 3 - 17550693 17551166 17550923.909 17550323 17552215 - gene protein_coding_gene FALSE TRUE AT3G47600.1 MYB94 (myb domain protein 94); DNA binding / transcription factor Encodes a putative transcription factor (MYB94). similar to MYB96 (myb domain protein 96), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62470.2); similar to MYB60-like protein [Vitis vinifera] (GB:ABK59040.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 1.42163259028656 10.4886315967665 4.10919067087069e-06 0.0289862309923219 10.4112767530887 9.33485843678697 1.42163259028656 0.170183814676176
AT3G19680_at 4.46614203346458 4.87952416822695 3.9226803399354 4.10604160564031 4.04417378237571 3.87931956672482 6.00953312952657 6.10672017476831 8.20322716006323 5.77476302675573 8.05762472591819 6.96657158171971 6.49566704513526 7.92491971593063 5.93057779025254 6.28488803904744 5.07443775365607 5.72079247994783 7.18386400829794 0.228326034408317 0.232432272915776 0.244074244879109 0.228795804610345 0.227167628456213 0.233758019093378 0.224515448174418 0.228284871315043 0.249299676598103 0.222769540746413 0.229463671790392 0.225295476563084 0.225318747987611 0.227006047065947 0.225141860396985 0.222769540746413 0.241887029994873 0.229092993358884 0.231280784179347 3 3 + 6841529 6842044 6841761.909 6840287 6842326 + gene protein_coding_gene FALSE TRUE AT3G19680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50040.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93135.1); contains InterPro domain Protein of unknown function DUF1005; (InterPro:IPR010410) -0.93722127987444 -10.4671479765326 4.17594309519636e-06 0.0294529266504199 10.4020049931472 11.4822099949945 -0.93722127987444 0.0849781886652017
AT2G30500_at 6.70113829898135 6.62478573748878 4.81974116822499 5.02750260329039 6.00413631753876 6.08293200529737 5.85424489067023 5.80975530126828 5.65410480504511 6.67751078495583 5.88140590853545 6.73033084834553 6.00793699015508 5.33146751038372 6.05372205351174 5.85046230807568 4.76919643861875 5.43411072745931 7.26027748551205 0.200244199245711 0.198451739828922 0.194384430596392 0.193019081848099 0.197599625926210 0.205636210520906 0.192309000112649 0.191899111938918 0.206455189745557 0.193807974796384 0.195898512892753 0.195735922300882 0.19628937319414 0.195492711565521 0.195710324248929 0.190300870752595 0.196424386110454 0.190540549233492 0.196691164837319 2 2 - 13005406 13005879 13005634.091 13005236 13007179 - gene protein_coding_gene FALSE TRUE AT2G30500.1 kinase interacting family protein similar to kinase interacting protein-related [Arabidopsis thaliana] (TAIR:AT5G58320.2); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE94140.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.768602480274813 -10.4653438731208 4.18160327976474e-06 0.0294886663289009 10.4012248715605 12.0095096019983 -0.768602480274813 0.0413823644156035
AT1G20160_at 6.77702137613331 6.90415653457411 8.49685769792566 8.66795393332016 9.08936137522875 9.01311742522886 8.59347954661028 8.62489439444738 7.22856790493473 7.52174648190305 8.01095245360699 8.72183871976384 7.96259736145044 8.61487818511991 8.73018276590027 8.29697562148138 8.5402925686193 6.6900282460367 8.53562740391838 0.213009312424311 0.220124330350507 0.205849755364324 0.202602010435079 0.208093170333326 0.205834598432747 0.209051915342229 0.201296256444539 0.232694505374400 0.210299366962467 0.207317141656800 0.208057387410490 0.201540219612805 0.208783296601677 0.208985317385492 0.209124808557533 0.206340817554588 0.222063611790908 0.207916699444608 1 1 - 6990905 6991355 6991159.909 6990775 6993963 - gene protein_coding_gene FALSE TRUE AT1G20160.1|AT1G20160.2 subtilase family protein|subtilase similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAG38994.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020)|similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G20150.1); similar to subtilisin-like protein [Glycine max] (GB:AAK53589.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAK53065.1); similar to subtilisin-type protease precursor [Glycine max] (GB:AAG38994.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259) 0.762961144156612 10.4571259671772 4.20749415919105e-06 0.0296670413164561 10.3976683420339 16.2498297040166 0.762961144156612 0.0395524764429188
AT1G56050_at 6.38651568760922 6.77414131476755 4.75325266689146 5.24036618281729 5.17619193633189 5.18622390055377 8.74011973659523 8.53137097986769 6.04576452660255 7.17383615915737 6.26301298027425 7.96711141419771 6.5861817360613 6.65669646122199 8.5881057275866 6.20192870128038 6.86541844718435 6.17296382626695 6.45668128585176 0.218352645209666 0.216730362946226 0.220012536557960 0.220372244821507 0.214690007644096 0.224576914604412 0.219418678578796 0.220198270162587 0.220451848157823 0.220473724412033 0.214227209267390 0.214086807829132 0.214759390604331 0.214086807829132 0.217234218231553 0.214086807829132 0.232715848279284 0.214480400077737 0.214086807829132 1 1|0 +|/ 20968749 20969813 20969091.9 20967384 20970006 + gene protein_coding_gene FALSE TRUE AT1G56050.1 GTP-binding protein-related similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G30580.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK09228.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Protein of unknown function DUF933; (InterPro:IPR013029); contains InterPro domain Conserved hypothetical protein 92; (InterPro:IPR004396); contains InterPro domain TGS-like; (InterPro:IPR012676) -1.08255575175301 -10.4516654268172 4.22479630305785e-06 0.0297848139365579 10.3953024321047 13.0842418351608 -1.08255575175301 0.113639068065243
AT1G21830_at 5.53476106328004 5.94320634963236 5.58482485225306 5.76226696179528 6.27566665624809 6.28113367769315 3.92214808368029 3.91134014954798 5.26088146226433 4.09389487504894 5.57687309279171 6.31704908208515 5.30692167400572 5.06143823370156 6.0065952310312 6.2319694244134 5.53291448429368 4.35197401065012 5.33811071607824 0.182984777200193 0.185204795861224 0.186231187620702 0.187891191403303 0.193273222584185 0.190025162958511 0.197022853333248 0.200252128441501 0.187110520742577 0.188479282091099 0.184615628071415 0.184065477410491 0.187177588884651 0.183040824870367 0.194019518605874 0.182843949513663 0.192918861719782 0.184260076443454 0.187045483928577 1 1 - 7661446 7662468 7661962.85 7661107 7662597 - gene protein_coding_gene FALSE TRUE AT1G21830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44608.1); similar to Os04g0690500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054352.1); similar to CAA30371.1 protein [Oryza sativa] (GB:CAB53474.1); similar to H0814G11.20 [Oryza sativa (indica cultivar-group)] (GB:CAJ86353.1) 0.899348505893313 10.4485424029999 4.23472736692346e-06 0.0298505932094435 10.3939483343435 10.6248414352257 0.899348505893313 0.0770938529484848
AT4G37310_at 8.48592679614965 8.51764805405096 8.55677650003096 8.67802023519966 7.8860077140986 7.56371484740798 8.95332288556696 8.77368652075742 7.67659274743758 8.8324950242299 6.68741424587742 6.91165077114238 7.3999728824616 7.33757358469315 6.34700082512073 7.60846518108444 7.85921760937554 7.37217810473517 8.66993828641491 0.179329988676595 0.175172596891162 0.179079066491926 0.180400776688412 0.173281676584214 0.184737248162229 0.176649181421623 0.175683399218399 0.182306744547227 0.173600392416739 0.174590665469196 0.180365289090725 0.185820826446869 0.185275380508234 0.191704061026723 0.173986832540418 0.184209079668765 0.184885421506963 0.172873593747866 4 4 - 17556161 17556574 17556366.636 17555921 17558887 - gene protein_coding_gene FALSE TRUE AT4G37310.1 CYP81H1 (cytochrome P450, family 81, subfamily H, polypeptide 1); oxygen binding member of CYP81H similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37330.1); similar to isoflavone 3'-hydroxylase [Medicago truncatula] (GB:AAQ20041.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.857045387706551 -10.4362952605417 4.27392371796916e-06 0.0301226143642466 10.3886313103683 16.2186093624522 -0.857045387706551 0.0674354294848316
AT2G36460_at 9.39280839747136 9.39619900181195 9.48204437673869 9.66039046271124 9.94029834404734 9.70632295113211 8.41598311965747 8.76968370603955 8.06086644040265 8.79869987604631 9.56485407067042 9.51862499514855 9.67451348070573 9.5791432155127 9.51341355117684 9.48239599652968 9.56834135061799 9.62442876870693 8.5089410215393 0.114009478233680 0.116306303469024 0.119590328689677 0.121150192782757 0.115745704509018 0.116024979873272 0.124758139458311 0.119108950923483 0.130303297176468 0.120711112889365 0.121178935801126 0.118566022490440 0.114009478233680 0.121961495077612 0.120912444436748 0.117516919035223 0.122482117333591 0.120940995858386 0.121921279368196 2 2 - 15304172 15304538 15304357.545 15303780 15305593 - gene protein_coding_gene FALSE TRUE AT2G36460.1 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT5G03690.2); similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT3G52930.1); similar to fructose-bisphosphate aldolase [Persea americana] (GB:CAB77243.2); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) 0.90657039669156 10.4010522827875 4.38898400007500e-06 0.0309291702485286 10.3732697570499 18.3564080655994 0.90657039669156 0.0796178247123282
AT4G14365_at 9.7702532749054 9.65968980625696 10.7846412724266 10.6164090507512 9.56920299698933 8.93477285881248 5.38077158492345 5.01120212293697 8.79641075133292 6.81535104639735 7.30770870424613 8.39925883581225 6.08579852897747 7.84665543689107 7.46107844577187 6.49887002858699 6.61526230987892 7.21285409752396 6.41311693160386 0.21354897688253 0.207408291086231 0.217103661141472 0.213301767295007 0.211154622213687 0.207408291086231 0.217297642292254 0.222503287916529 0.212527554001430 0.212708044798968 0.210491325672369 0.207408291086231 0.219198923896415 0.214752808671970 0.209433443423762 0.210924950949567 0.215049587673189 0.210671879356239 0.214642733981455 4 0|4 /|- 8271675 8272248 8271848.143 8271460 8273733 - gene protein_coding_gene FALSE TRUE AT4G14365.1 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein similar to zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G23280.1); similar to auxin-regulated protein-like protein [Populus trichocarpa] (GB:ABG37641.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.17879345141945 10.4009871850855 4.38919968805581e-06 0.0309291702485286 10.3732412984879 15.9758988917865 1.17879345141945 0.131750136458255
AT1G12330_at 5.26892814786064 5.29946791474848 4.53663151693511 4.44712543728505 5.86603771059787 5.60833442003778 6.02373540197935 6.13821658665259 6.93584512066525 6.69466238236882 6.38484273464886 6.48148850520437 5.7496629643331 5.95132516728667 5.22425367662663 6.09882606022674 4.47170852793503 6.35589428640469 6.95272110984436 0.224564469735206 0.212281529924595 0.219781869946945 0.223138136509378 0.209467443919843 0.228614736697936 0.211969139892835 0.213480588405046 0.215324740783403 0.209467443919843 0.213519635982514 0.213384927929529 0.212210626621457 0.213732457842561 0.211305238653053 0.210391125195596 0.24169690998913 0.213174956720592 0.214741425427454 1 1 + 4196333 4196597 4196449.5 4194656 4196747 + gene protein_coding_gene FALSE TRUE AT1G12330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G12900.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE94280.1); contains domain TNF receptor-like (SSF57586) -0.79469035277793 -10.3990710253591 4.39555377038161e-06 0.0309666763123384 10.3724034776573 11.7489728643251 -0.79469035277793 0.0514705834158911
AT1G52880_at 8.61341256409345 8.79628828924266 9.54385261655425 9.63401883186829 9.75923152755503 9.7767638420275 9.12906927353036 9.15158508078416 7.9464459964473 8.47726869355816 8.85878557469463 8.1399030398277 9.47517877226128 9.08411638131303 8.29972036351975 9.36626073648046 9.79205545783756 8.76362735199197 8.27257462744802 0.146552679866978 0.140232141530776 0.148328141652423 0.150702140479791 0.146371932065860 0.142066233476322 0.143010107677180 0.146406900827089 0.162236658413304 0.159012036489008 0.143225240445371 0.151338491333088 0.149814511713517 0.143560636739584 0.151826401302904 0.144608258296789 0.149422019293536 0.153012949444532 0.153075032933152 1 1|0 -|/ 19692994 19693528 19693181.1 19692625 19694210 - gene protein_coding_gene FALSE TRUE AT1G52880.1 NAM (Arabidopsis NAC domain containing protein 18); transcription factor Transcription factor with a NAC domain. Homologous to the petunia gene NAM which is required for the development of the shoot. Expressed in the embryo. Identical to NAC domain-containing protein 18 (ANAC018) (Protein NO APICAL MERISTEM) (AtNAM) (NAM) [Arabidopsis Thaliana] (GB:Q9ZNU2;GB:Q8LDB9;GB:Q8LPH5); similar to ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15510.1); similar to NAM-like protein [Prunus persica] (GB:CAG28971.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.748118711589127 10.3917250941372 4.42000809816835e-06 0.0311345370434979 10.3691890499992 17.9028039526529 0.748118711589127 0.0356290180442247
AT2G40130_at 5.66321447829804 6.15958741581245 6.45558049075004 6.43588879420252 8.33053675969461 7.32177505892993 6.20347741920491 5.97764451872733 2.12667872464831 2.17701233724236 3.59953960357284 4.38387458909829 5.44837520116627 4.78604713115746 2.5866581932916 4.27622162897304 4.77681147564137 4.43246693704265 2.43671130967506 0.332102371257542 0.341976237744437 0.341350929159916 0.343347490061122 0.333889656544639 0.33759764892615 0.331867628472579 0.336246733620957 0.371030543656330 0.352065762247218 0.334020719947265 0.331211144143714 0.336330703186002 0.331211144143714 0.362613402619606 0.331988315373260 0.34240784610293 0.33154991159848 0.339011772033138 2 2 + 16774024 16774875 16774377.182 16772998 16776346 + gene protein_coding_gene FALSE TRUE AT2G40130.1|AT2G40130.2 heat shock protein-related similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT2G29970.1); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91056.1); similar to Os12g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065925.1); contains domain ATP-DEPENDENT CLP PROTEASE (PTHR11638); contains domain ATP-DEPENDENT CLP PROTEASE-RELATED (PTHR11638:SF1); contains domain Double Clp-N motif (SSF81923)|similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os12g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065925.1); similar to 101 kDa heat shock protein; HSP101-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05509.1); contains InterPro domain ATPase AAA-2; (InterPro:IPR013093) 1.58720643617731 10.3895810268837 4.4271740816484e-06 0.0311805870570497 10.3682501035157 9.8349881847099 1.58720643617731 0.198476010204095
AT4G01080_at 3.79504195514592 4.39136872749399 3.92759149954994 4.23809455578392 2.89532989224934 3.38642082079381 9.29815164417707 9.4158250827774 4.03496463614042 7.0554973006086 5.7204693063071 6.06489376683053 6.66431643275298 6.22674183461424 5.92819197727162 7.29536488940348 7.1522057374035 6.26229672625738 6.35817993319583 0.270160906401097 0.2629297110682 0.263351003375549 0.265558285891043 0.264595206546254 0.268188283583339 0.267708960839058 0.267656099642224 0.264821118227788 0.26484591234439 0.266593020640865 0.262405636980753 0.260797890692709 0.268762729293721 0.267891232853588 0.260797890692709 0.274757685123599 0.271989726551356 0.268830430009827 4 4 - 466762 467195 466986.182 466391 468294 - gene protein_coding_gene FALSE TRUE AT4G01080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01430.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -1.25757076654876 -10.3856531898909 4.44033535022238e-06 0.031268841536266 10.3665291185100 11.2837400424981 -1.25757076654876 0.145513670914210
AT1G08930_at 10.5709793641350 10.6062737486336 10.4838121923878 10.6925806927461 10.7702111452353 10.4712581100281 7.24202398453783 7.5644421816151 10.3494333155393 9.45648041753512 10.1573289046154 10.0482813466753 9.7241223452541 10.1245225529612 9.75042142252586 9.93532604943697 9.30522210143327 9.78531700821403 9.0238597960103 0.125647005396668 0.123073906023472 0.134830201064486 0.123320674408084 0.122178264329898 0.125958143028240 0.163590094047088 0.134761178110269 0.130247818480054 0.124085282674698 0.125841031684075 0.121310719138520 0.121310719138520 0.125822650408741 0.132481737013575 0.121310719138520 0.139092086965171 0.126645729481886 0.125195027275079 1 1|0 +|/ 2875676 2876952 2876296.5 2873468 2877273 + gene protein_coding_gene FALSE TRUE AT1G08930.1|AT1G08930.2 ERD6 (EARLY RESPONSE TO DEHYDRATION 6); carbohydrate transporter/ sugar porter encodes a putative sucrose transporter whose gene expression is induced by dehydration and cold. Identical to Sugar transporter ERD6 (Early-responsive to dehydration protein 6) (Sugar transporter-like protein 1) (ERD6) [Arabidopsis Thaliana] (GB:O04036;GB:O65799); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT1G08920.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.926214461031782 10.3716743551416 4.48752897209328e-06 0.0315966914925088 10.3603950712228 19.5320687904570 0.926214461031782 0.0844528730289073
AT2G22500_at 8.51917555460628 8.70490213724967 9.36901366727864 9.2081821915925 7.4674932565375 7.35099869579447 6.19450927846974 6.61201904892765 5.8693427385383 4.54609060308771 5.2006223127767 8.27123144564493 4.482252361346 6.77041558373509 6.3371775439304 5.66804146187471 5.72390508938406 6.94933615583061 5.0289669383828 0.222896619002232 0.221328246161494 0.224368368985484 0.228341828142753 0.221223036207528 0.224300778323826 0.227447017299088 0.223534607340979 0.230433593891680 0.225262300319067 0.227286323072778 0.223089091400485 0.233048083239452 0.228613147833016 0.234108832857463 0.223360410646390 0.230375700881105 0.222856962465484 0.229462807185724 2 2 - 9570651 9571167 9570910.455 9570304 9571831 - gene protein_coding_gene FALSE TRUE AT2G22500.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT4G24570.1); similar to putative mitochondrial dicarboxylate carrier protein [Trifolium pratense] (GB:BAE71294.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) 0.934254882816573 10.3685780434831 4.49805756957968e-06 0.0316663252898410 10.3590344320527 13.5900398142995 0.934254882816573 0.0862233497337802
AT1G08650_at 5.3746108705204 5.77413501788131 5.09951445208532 5.72288087174102 6.45327530368612 6.18305489735423 5.49904815174675 5.49124889710456 4.69156063897689 3.60134940468224 6.73114558837236 5.63859974319712 5.80726651864055 6.38847045565279 6.38322728624819 4.95108161323824 6.64170916271325 4.23926982366287 3.03011634578658 0.242650059902936 0.240410985827027 0.244311485397114 0.240812350912059 0.239246686913257 0.239165264032999 0.238345041653281 0.250213788894414 0.257355250293376 0.24776066450842 0.236681406423957 0.239267510841069 0.241557243462718 0.236681406423957 0.243716229554278 0.236681406423957 0.253760757589117 0.247148453347851 0.251583994317737 1 1 + 2752467 2752923 2752679.909 2752159 2753706 + gene protein_coding_gene FALSE TRUE AT1G08650.1 PPCK1 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE); kinase Encodes a phosphoenolpyruvate carboxylase kinase that is expressed at highest levels in leaves. Expression is induced by light. similar to PPCK2 (PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT3G04530.1); similar to phosphoenolpyruvate carboxylase kinase [Lotus japonicus] (GB:BAC20362.1); similar to phosphoenolpyruvate carboxylase kinase [Glycine max] (GB:AAN12515.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.20158739552693 10.3650021974681 4.51025091670626e-06 0.0317476562026954 10.3574621867666 10.5106902596554 1.20158739552693 0.136404528571372
AT2G15970_at 11.1661829940392 11.3364414585631 11.1014158657828 11.1572317119154 11.6939635454537 11.3359375580264 11.0330835164132 11.1247114009977 9.7494111272501 10.4294016013010 11.8404752257936 11.5370144562092 12.2005399938681 11.8975181025743 11.4849461107138 11.4412803205311 11.5586140886937 11.4920396690040 10.1507961204848 0.109546354352019 0.107006677035046 0.113692424190532 0.108978899374624 0.109516726930092 0.116445211950027 0.108501671687781 0.108681140987755 0.130730877561314 0.118356408884079 0.111407364503476 0.107457941153161 0.110239033751443 0.111732724924305 0.107006677035046 0.108560799789987 0.114468874970986 0.109631974781689 0.117684726658561 2 2|0 +|/ 6957276 6958032 6957483.5 6957170 6958274 + gene protein_coding_gene FALSE TRUE AT2G15970.1 COR413-PM1 (cold regulated 413 plasma membrane 1) encodes an alpha form of a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. similar to stress-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G37220.1); similar to putative stress-responsive protein [Tamarix androssowii] (GB:AAT01418.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.864358103684727 10.3428524754455 4.58660272989609e-06 0.0322805100130087 10.3477022295241 22.1393325625333 0.864358103684727 0.0710750547538883
AT1G20696_at 10.4829621493926 10.3130869076562 10.7280397474032 10.4698673058281 10.8214411416888 10.6696739760517 9.82574431799665 9.72606879959484 8.99721881070975 9.13586510662484 10.0099711950330 10.0296559834336 10.2884835140198 10.3095468397229 9.97640383766016 10.1018141007347 10.224361281546 9.50745557463527 8.82578141438635 0.080517448099378 0.0788365051405275 0.0843891218554676 0.0837947467778724 0.0799374098218568 0.0848862200003174 0.0822160129161792 0.0805838748513714 0.0901754581886177 0.0824912155921169 0.0788365051405275 0.0801193561211668 0.0788365051405275 0.0826987184636992 0.0788365051405275 0.0789193517074977 0.0837661085253401 0.0788365051405275 0.0788365051405275 1 0|1 /|+ 7179990 7180681 7180304.286 7179442 7181489 + gene protein_coding_gene FALSE TRUE AT1G20696.1|AT1G20696.2|AT1G20696.3 HMGB3 (HIGH MOBILITY GROUP B 3); transcription factor|HMGB3 (HIGH MOBILITY GROUP B 3) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB2 (HIGH MOBILITY GROUP B 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20693.1); similar to high mobility group protein [Solanum tuberosum] (GB:CAA05365.1); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071)|similar to HMGB2 (HIGH MOBILITY GROUP B 2) [Arabidopsis thaliana] (TAIR:AT1G20693.3); similar to high mobility group protein [Solanum tuberosum] (GB:CAA05365.1); contains InterPro domain High mobility group box HMG1 and HMG2; (InterPro:IPR000135); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.827481548012054 10.334912133118 4.61432241267027e-06 0.0324709868179607 10.3441945816285 19.9007355355791 0.827481548012054 0.0620296787604854
AT2G40360_at 7.51477125417461 7.36884988720446 6.75545243370504 6.60919545037157 6.30266380344177 5.89184106212274 6.71150066557639 7.04879037086147 4.99793960704266 6.25267358045346 4.36832186776501 5.32649752356877 4.59792662213885 4.30270145425981 5.1037936162944 5.11891017663429 5.03110866618614 4.39484374423938 6.70312204152938 0.273861778947771 0.270911879544364 0.276266380615003 0.274288767443048 0.276383526388894 0.275597805411825 0.275473091833825 0.273655669575227 0.294957661353264 0.285249478309453 0.278276545645696 0.271650474573403 0.279634291366975 0.284401097314861 0.279981235576587 0.272553223302828 0.287296931471354 0.280254530457610 0.281433797979692 2 2 - 16860220 16860808 16860536.909 16859958 16863768 - gene protein_coding_gene FALSE TRUE AT2G40360.1 transducin family protein / WD-40 repeat family protein similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to putative WD-40 repeat protein [Trifolium pratense] (GB:BAE71307.1); similar to WD40 [Cucumis melo] (GB:AAU04772.1); similar to putative transducin / WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84089.1); contains InterPro domain BOP1, N-terminal; (InterPro:IPR012953); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.987627653916643 -10.2874120204598 4.78408175957805e-06 0.0336607992603912 10.3231133601087 12.1579288002128 -0.987627653916643 0.098690302851886
AT4G15093_at 5.84007284263969 6.52174240044043 7.01661482013245 7.12729390592356 8.13274499271695 7.65351171926184 5.67157002321957 5.93501496724852 4.73436610006017 5.17595339479852 6.09321730165713 5.84676370557419 6.16100245597073 6.69886387383274 5.67836423397464 5.73066177682936 6.52743173327385 6.4787184583831 5.29954325720362 0.218671062046359 0.208184482896415 0.215873756923560 0.210699073935040 0.217584588769010 0.215949124382071 0.211678364379614 0.218615276075593 0.214332299133233 0.207879056876207 0.215489844169846 0.210630357367865 0.216402807718552 0.226358529607504 0.212453668980809 0.213928335455427 0.211938358703880 0.214503016832906 0.2085883183672 4 0|4 /|+ 8618932 8619417 8619134.7 8618340 8619643 + gene protein_coding_gene FALSE TRUE AT4G15093.1 catalytic LigB subunit of aromatic ring-opening dioxygenase family Identical to 4,5-DOPA dioxygenase extradiol-like protein [Arabidopsis Thaliana] (GB:Q949R4;GB:O23363); similar to Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B [Medicago truncatula] (GB:ABE80304.1); contains InterPro domain Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; (InterPro:IPR004183) 1.28618249643559 10.2826847130634 4.80135257066922e-06 0.0337775153346580 10.3210060869214 12.3482368055101 1.28618249643559 0.15244446284088
AT3G15450_at 11.9909051022215 12.1470004010235 10.9613001138800 11.0640023424170 12.7827340267257 12.2851600199329 8.92593314939856 9.01888958897294 10.2871642112142 9.58594627569068 10.7915660657749 11.1444495172049 10.8482667486109 10.6961896507726 10.8127192157219 10.5976547170140 10.7865752294385 10.6664547329746 10.5005264663419 0.121785281274491 0.119361839497251 0.121762449149387 0.123836225860271 0.127310057817180 0.124408241404722 0.12483167299178 0.124063346667825 0.135537233237309 0.129115080632808 0.119653070895514 0.119069197947297 0.119069197947297 0.131142883254920 0.121417227205087 0.119069197947297 0.126533078596736 0.119069197947297 0.122760449800160 3 3|0 +|/ 5213223 5213973 5213557.7 5213004 5214131 + gene protein_coding_gene FALSE TRUE AT3G15450.1|AT3G15450.2|AT3G15450.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) 0.96052794947078 10.2799471428004 4.81138570361559e-06 0.0338432870392321 10.3197850045349 21.6057556609572 0.96052794947078 0.093374863933551
AT3G47430_at 8.01090706644162 7.9348863190076 8.18889612668928 8.07861708852999 8.08103682446546 7.7590600177181 9.59620956025315 9.96307397814463 8.60262047254106 9.26742418565495 7.31726375370277 7.4033701187626 8.76126889865743 8.10783192940072 7.16911731532925 8.85947698345254 8.67296208160526 8.0071695107997 9.2760270038044 0.202431930133394 0.195566462815162 0.204537849086322 0.20115691531712 0.188505295605680 0.201448530060581 0.204031845802234 0.201950504684133 0.213000300716052 0.189920088553075 0.199103225358566 0.215347057003837 0.197697925040866 0.201040414342628 0.214014663854292 0.198066250702948 0.202292524207165 0.203801217085121 0.188505295605680 3 3|0 +|/ 17491872 17492636 17492358.7 17491588 17492777 + gene protein_coding_gene FALSE TRUE AT3G47430.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, located on the peroxisome membrane, controls peroxisome proliferation. similar to peroxisomal biogenesis factor 11 family protein / PEX11 family protein [Arabidopsis thaliana] (TAIR:AT1G47750.1); similar to Os04g0534600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053418.1); similar to Os03g0302000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049868.1); similar to Peroxisomal biogenesis factor 11 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95492.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) -0.930374848323696 -10.2541381400996 4.90712822957694e-06 0.0345118328386146 10.3082453075723 16.9945849366382 -0.930374848323696 0.0875935605926446
AT3G07640_at 8.2617159755393 8.37152573168571 8.57821924557326 8.56098204856835 9.04882264911211 8.78467728238479 7.41972863410927 6.84238507610159 6.09267224305714 6.18920242708493 7.13195085737731 7.15870055687149 6.98222416675267 7.47831180893977 7.43796586384819 7.28093693292707 7.39458775540025 7.11291538471307 6.21507048336705 0.199154620008227 0.191069557909781 0.195748017010411 0.195805213038572 0.19766803250528 0.197624041853558 0.19452423642308 0.205958367497962 0.201028662560733 0.197895195339807 0.196198234367824 0.189642923970728 0.196153331879860 0.200864166372704 0.190651824640740 0.192888483625950 0.190782796568670 0.195221546234276 0.193156599404566 3 3 + 2438410 2439557 2439193.818 2438138 2439889 + gene protein_coding_gene FALSE TRUE AT3G07640.1 similar to Os02g0582400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047253.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73827.1) 1.05044361670067 10.2495484023226 4.92437520519444e-06 0.0346282064429273 10.3061878926612 14.9399308555627 1.05044361670067 0.111543586349394
AT3G50340_at 5.51702990493523 5.65922087137708 4.93174544428395 5.21389490244853 6.00568774364619 6.21667886562397 4.90772989699473 4.99491033706965 5.84012883783688 4.81526979487818 6.7556047065474 7.6975158033001 6.9445667873535 6.73334143301326 8.24780955054426 7.33046642991615 6.71355400868447 6.40887990415182 6.5743780614432 0.184832552745396 0.181370478897504 0.195992303406508 0.182232945723066 0.189769869824997 0.193791320176465 0.188126564346659 0.200372874856031 0.199251406826726 0.189256929970963 0.181965772138565 0.187957663071757 0.186312850795550 0.183086720830505 0.206312409605279 0.183941584660017 0.200989209335798 0.185266403002050 0.187761066876035 3 3 - 18676315 18676887 18676605.091 18676076 18677654 - gene protein_coding_gene FALSE TRUE AT3G50340.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G67020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09363.1) 0.841493708146303 10.2458806768365 4.93820591144557e-06 0.0347205257633738 10.3045426394306 11.8544753587932 0.841493708146303 0.0674567590896462
AT2G36380_at 6.80078840928205 7.14077775499266 6.68079285514797 7.08906282608762 8.41744600543401 7.77618189905528 6.26394370035056 6.09242876925048 6.06662156198355 5.62540778805928 7.91963291035776 6.64691327281185 6.96135028093 8.23482747982813 6.62604970464143 7.05807940148835 6.73823690146527 7.91073659923925 5.34909562792273 0.260518970258306 0.245974037575737 0.249116329919455 0.241406884214949 0.249053006647494 0.255861819713208 0.250833713210933 0.244132410540136 0.254913334707022 0.255448891831004 0.251548542671395 0.249671782182132 0.241380552838676 0.254434012970973 0.242764346910105 0.24333826599654 0.269503987078895 0.241380552838676 0.244361059190117 2 2|0 +|/ 15269989 15270628 15270323.7 15264662 15270843 + gene protein_coding_gene FALSE TRUE AT2G36380.1 ATPDR6/PDR6 (PLEIOTROPIC DRUG RESISTANCE 6); ATPase, coupled to transmembrane movement of substances Identical to Pleiotropic drug resistance protein 6 (PDR6) [Arabidopsis Thaliana] (GB:Q7PC87;GB:Q56YS3;GB:Q9SJR6); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to ATPDR11/PDR11 (PLEIOTROPIC DRUG RESISTANCE 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G66950.1); similar to ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G16340.1); similar to Pleiotropic drug resistance protein 2 (NpPDR2) (GB:Q2PCF1); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59574.1); similar to Pleiotropic drug resistance protein 1 (NtPDR1) (GB:Q76CU2); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 1.24899478207617 10.2360786118582 4.97538091951318e-06 0.0349769278641776 10.3001406790098 13.5038544332003 1.24899478207617 0.14713861737825
AT4G12730_at 4.875026591873 5.32109030450211 0.897252623889382 1.18136032685966 1.42508202168467 2.03649159803192 6.04413975932896 6.57204627106111 7.36928782006195 6.212023636696 9.88330609185022 9.43360167514755 8.16313510493195 9.12485665397508 9.50771467469081 8.36784599485412 5.1786058447885 7.91290458817193 7.00639473402733 0.300467477620355 0.304099481429571 0.314267564716817 0.322392363056388 0.307249986210107 0.306853538558008 0.300467477620355 0.304039277542952 0.300467477620355 0.305375582275760 0.305755535606301 0.305812834148413 0.300608661865731 0.304350267742379 0.303864878798863 0.300467477620355 0.30333408682927 0.304939249901964 0.303375032840629 4 4 - 7491620 7492163 7491881.909 7491380 7492873 - gene protein_coding_gene FALSE TRUE AT4G12730.1 FLA2 (FLA2) AF333971 Arabidopsis thaliana fasciclin-like arabinogalactan-protein 2 (Fla2) mRNA, complete cds Identical to Fasciclin-like arabinogalactan protein 2 precursor (FLA2) [Arabidopsis Thaliana] (GB:Q9SU13;GB:Q8L9T2;GB:Q9C5Q6); similar to FLA1 (FLA1) [Arabidopsis thaliana] (TAIR:AT5G55730.1); similar to putative fasciclin-like arabinogalactan protein FLA2 [Trifolium pratense] (GB:BAE71278.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.36705074539269 -10.2254074115993 5.01620593849953e-06 0.0352589115417132 10.2953401323717 11.1985937165604 -1.36705074539269 0.167084880847338
AT4G31290_at 8.21366393223934 8.0620973818363 4.18368700144669 4.20869027110978 7.33127427080904 7.3273368463552 6.8298072340763 6.25175686316408 8.14124862600972 8.00892730424305 8.75817873766432 8.61209374730498 8.15981038041532 7.95593816329032 8.55646622176385 6.96175656687128 6.62810834534579 8.06956686156562 9.03756610796849 0.210938789018383 0.207721294864060 0.227633029345365 0.214814278049264 0.211268131414584 0.218741188518355 0.206860591144536 0.215760656030068 0.228583673089894 0.212846458175943 0.206210509364303 0.206423330076927 0.211141697246533 0.219537646329571 0.208170414091174 0.208595676029291 0.206680969347539 0.212702900682933 0.209633540252590 4 0|4 /|+ 15187096 15188244 15187750.375 15185964 15188490 + gene protein_coding_gene FALSE TRUE AT4G31290.1 ChaC-like family protein similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT5G26220.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to meloidogyne-induced (GB:ABA46779.1); contains InterPro domain ChaC-like protein; (InterPro:IPR006840) -1.00487919505578 -10.2131975542625 5.06337441933535e-06 0.0355853954190889 10.2898368068795 14.7303661705136 -1.00487919505578 0.103508581432153
AT1G71840_at 8.27681516438606 8.03832473627548 8.26384201459835 8.10344296236266 7.54462010623231 7.27351493281454 8.60042642098611 8.64210623265344 7.12119350687444 7.1783980587478 5.61576647233523 5.84976230917381 6.25995593730105 5.53396687531951 6.21761050438745 6.07504270491677 6.41632194359834 6.13185161855926 7.0130817145891 0.236448012084101 0.232619129538459 0.237799893212615 0.23373196551787 0.231853608882151 0.233321287285132 0.241298172084672 0.233577838854592 0.23498130041559 0.229668069317916 0.233199966053546 0.233114988976667 0.232849843406495 0.234787790473687 0.231918277165782 0.229420703081721 0.23256968790402 0.235825593045029 0.229274302461509 1 0|1 /|+ 27027354 27027961 27027801.556 27025880 27028213 + gene protein_coding_gene FALSE TRUE AT1G71840.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to putative an (GB:AAK14409.1); similar to Os03g0685600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050927.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.842376382805748 -10.1932828404009 5.14136844051921e-06 0.0361283960315285 10.2808363486903 14.6512661825066 -0.842376382805748 0.0687531961974697
AT1G28330_at 8.10715493341352 8.23848529826632 6.20833017765741 6.02413037390769 9.1114382261942 8.83183795836928 2.344744896051 3.27275699704752 3.85987607639605 2.80984229668488 3.89000397769129 4.15270071091085 4.6868941664126 3.7120024930834 4.02660257556269 3.64763658865958 4.44043721770861 3.44912825539083 3.13194498839418 0.28153456109348 0.276207893115814 0.281272120203246 0.272367552890394 0.284783143440124 0.287059479868639 0.26813554559598 0.281071604358688 0.281893136990699 0.276442068442048 0.267806573755883 0.267140171246255 0.269366534113989 0.277718853063904 0.267640277625938 0.267140171246255 0.268897853866607 0.279339363014946 0.269008955576047 1 1|0 -|/ 9934239 9935155 9934840.889 9933871 9935256 - gene protein_coding_gene FALSE TRUE AT1G28330.1|AT1G28330.2|AT1G28330.3 DRM1 (DORMANCY-ASSOCIATED PROTEIN 1) dormancy-associated protein (DRM1) similar to dormancy/auxin associated family protein [Arabidopsis thaliana] (TAIR:AT2G33830.2); similar to auxin-repressed protein-like protein ARP1 [Manihot esculenta] (GB:AAX84677.1); contains InterPro domain Dormancyauxin associated; (InterPro:IPR008406) 1.39330164026167 10.1872457117395 5.16527509632962e-06 0.0362912228268119 10.2781018923700 10.1513082919480 1.39330164026167 0.172235909110632
AT2G19470_at 6.95389647623114 6.89277087277843 7.03221559612523 6.98184198832026 7.13606004093539 7.05531946539946 6.2917351641028 6.35745174900667 5.00719324343631 5.42634556705102 6.27102031236246 5.98863535732349 6.27734386718724 5.84380603432694 6.02196148458854 5.96906192066451 6.57680653875989 6.13670609849639 5.01106997726518 0.201330854077754 0.199003555049134 0.19954409796726 0.204686719255038 0.197912893262261 0.202276777139659 0.197321190871479 0.197321190871479 0.219279787653230 0.205621371782528 0.202039878199622 0.197321190871479 0.205804092207670 0.204454088440231 0.198668915781643 0.199503270585634 0.203469985656948 0.210396721654449 0.204260110345155 2 2|0 -|/ 8440973 8441843 8441484 8440693 8443628 - gene protein_coding_gene FALSE TRUE AT2G19470.1 CKL5 (Casein Kinase I-like 5); casein kinase I/ kinase similar to casein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72710.1); similar to CK1 (casein kinase 1-like protein 1), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G26100.1); similar to casein kinase I-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.707430239814084 10.1872175652276 5.16538684349288e-06 0.0362912228268119 10.2780891371709 12.4795967345947 0.707430239814084 0.0226374748668610
AT2G22450_at 8.39035499136896 8.17977511206303 7.33400250152191 7.42686469477086 9.0421209976815 8.4092244966546 5.39329249536342 4.39789285673874 4.62384891268196 4.1405150121227 6.37089024354595 5.91745868179738 6.03414888492023 6.23644315953492 6.42959482491721 4.94939669540578 5.60465555865401 5.9611876655489 3.73966028941612 0.243268444711857 0.245461345733456 0.240443391758036 0.235869363148169 0.244565945031907 0.249433843096493 0.238838695822746 0.240644165083844 0.24271444217583 0.244287513488191 0.233229859378169 0.231438166076194 0.237161001252268 0.239007738209084 0.236768805598795 0.232038864203421 0.248508750184093 0.236935710069107 0.250912312022508 2 2 + 9538937 9539745 9539380.818 9537627 9539994 + gene protein_coding_gene FALSE TRUE AT2G22450.1 riboflavin biosynthesis protein, putative similar to ATGCH (Arabidopsis thaliana GTP cyclohydrolase II), 3,4-dihydroxy-2-butanone-4-phosphate synthase/ GTP cyclohydrolase II [Arabidopsis thaliana] (TAIR:AT5G64300.1); similar to GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase [Malus x domestica] (GB:AAQ03091.1); contains InterPro domain GTP cyclohydrolase II; (InterPro:IPR000926); contains InterPro domain 3,4-Dihydroxy-2-butanone 4-phosphate synthase; (InterPro:IPR000422) 1.61634410082865 10.1865000295582 5.16823650741013e-06 0.0363016932280487 10.2777639499511 12.3746810361191 1.61634410082865 0.207978711613613
AT1G13650_at 8.6922035763903 8.96319266739046 8.9997004807023 8.83025427043252 8.73195278682283 8.65705649960246 11.6294066034008 11.4535730345858 10.9081831511943 11.3223104147552 10.6464545148318 10.9624262554885 10.1814877206514 10.8822576729093 10.6949910329049 11.5277373481698 10.9335634460641 10.4497982115085 10.9284113442434 0.0975231645496855 0.0929104806826267 0.105294562871118 0.104932026113064 0.096563827166267 0.0984518358644812 0.0933289520469836 0.0960024975694612 0.106626975831359 0.0938980356959104 0.0933462360746438 0.0938027451959223 0.0947700975523908 0.095591219767565 0.0968633859398527 0.0925121417853764 0.101086481905877 0.101606063090258 0.0943008233835784 1 1|0 -|/ 4680569 4681215 4680917.8 4680429 4682193 - gene protein_coding_gene FALSE TRUE AT1G13650.1|AT1G13650.2 similar to 18S pre-ribosomal assembly protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G03810.3); similar to hypothetical protein [Trypanosoma cruzi strain CL Brener] (GB:XP_813437.1) -0.823990869566685 -10.1765536958503 5.20791833347424e-06 0.0365752104559896 10.2732522143194 20.4135714042728 -0.823990869566685 0.0644437545227012
AT1G78210_at 8.6505259907793 8.82862532222397 9.10407083881204 9.06418764659953 9.1540326777517 8.9581457120395 8.0321588232638 7.87550546707701 8.8183786161285 7.67865334868528 9.56605610754924 9.49072891168682 8.55330249595146 9.16585319182145 9.3398021447109 8.6329106545785 8.06592502183987 8.83831369441885 7.84189607762746 0.144777592040633 0.141334734117841 0.143139823962000 0.141467102120422 0.148667036189797 0.151525148486330 0.142923815063165 0.148115316905836 0.155262233249862 0.162682585828139 0.145118038625120 0.148352454295650 0.150926180442422 0.151792447952482 0.141902315530175 0.144619174321740 0.172021484752758 0.146282038739421 0.15441187141282 1 1 - 29427714 29428814 29428364.091 29427609 29429268 - gene protein_coding_gene FALSE TRUE AT1G78210.1 hydrolase, alpha/beta fold family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT5G09430.1); similar to Putative hydrolase [Oryza sativa] (GB:AAM08532.1); similar to Os07g0622700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060317.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.783520415818615 10.1570976982749 5.28652182830697e-06 0.0371219562783716 10.2644048993459 17.2432003308017 0.783520415818615 0.0536809927556253
AT2G39210_at 9.40879964504122 9.9337866253554 10.0358016802649 10.1229518136578 8.57820484953506 8.48944799592478 4.58933211553683 4.83745881459836 8.22846093212586 5.67033395560734 6.17372134567656 7.98425479183998 4.14305338695109 6.98321082067861 6.34518110785787 6.32662343124029 5.82882648382215 6.54397596136842 5.34778882566774 0.250107217659135 0.257965109095217 0.262026005778763 0.255193339853469 0.247833071101076 0.258688238830177 0.252447598003548 0.250609420595735 0.245911869569627 0.246617055810269 0.249054857690475 0.245911869569627 0.250290621752397 0.248172284266745 0.248408113690605 0.245911869569627 0.253044020964334 0.249104371151254 0.256636905747841 2 2 - 16373550 16373909 16373745.091 16373235 16375353 - gene protein_coding_gene FALSE TRUE AT2G39210.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G28120.1); similar to putative nodule-specific protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37543.1); similar to nitrate and chloride transporter [Glycine max] (GB:AAW51884.1); similar to putative nodule-specific protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83908.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) 0.994917648212538 10.1501883200088 5.31475244561468e-06 0.0373148769206606 10.2612559690490 14.6027898528125 0.994917648212538 0.102767534501511
AFFX-r2-At-Actin-M_s_at 11.0524678116738 11.1952670131522 11.6157491032802 11.9464717380476 11.7717173682639 11.7031848386196 10.997836471142 11.4136443301759 10.9607155386069 10.7610938987014 12.1674768730612 12.1159901106200 12.3385983312046 12.1842701483694 12.1582602557489 12.0345125724036 11.7673435698569 12.0646055720628 10.6114918164026 0.0773929436447995 0.0746568802562051 0.0796186402068918 0.0763297694616789 0.076699964010877 0.0786326932477123 0.0758763874969871 0.0764665202183664 0.0826689935874503 0.0768914440840227 0.0767593616750158 0.0746568802562051 0.0761027429620622 0.0770426918118245 0.0775221530431592 0.0746568802562051 0.0803565376433629 0.0747411303301576 0.076247025920107 NA NA NA NA NA FALSE FALSE 0.960295975056215 10.1438884657815 5.3406386084701e-06 0.0374912830314601 10.2583816245667 22.9028669661625 0.960295975056215 0.0959419108372297
AT1G62430_at 9.08224384637578 9.41477917361982 9.59920874165893 9.52852184527579 10.0804760113884 9.70711204346236 9.26164896013359 9.13035404013755 8.2752822177651 7.81599048822715 9.55832234231031 9.04008955765723 9.52913771787659 9.45256251324225 9.11928607024013 9.02300338129249 9.00068725631948 9.00878467966338 7.48755424362282 0.135787879069296 0.134615437545602 0.132643105167260 0.131923902365181 0.134945002977677 0.136303592228968 0.135109264573209 0.135517396352981 0.136739199959531 0.137252136352636 0.132269327827141 0.133466305649597 0.130293752250554 0.135147636325729 0.136156888405681 0.130293752250554 0.164999004565432 0.141526404182156 0.151769840226197 1 1|0 -|/ 23109997 23111383 23110766.111 23109606 23113141 - gene protein_coding_gene FALSE TRUE AT1G62430.1 ATCDS1 (CDP-diacylglycerol synthase 1); phosphatidate cytidylyltransferase Encodes a CDP-diacylglycerol synthase, involved in phospholipid biosynthesis. Identical to Phosphatidate cytidylyltransferase (EC 2.7.7.41) (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) (CDS1) [Arabidopsis Thaliana] (GB:O04928;GB:O48808); similar to phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT4G22340.3); similar to Os01g0758400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044302.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); similar to Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) (GB:O04940); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) 0.93172418099994 10.1294368085791 5.40055121439582e-06 0.0379064689738443 10.2517764093353 18.0135896692716 0.93172418099994 0.0902899983805013
AT4G08390_at 8.03894978086872 8.26969752196283 8.2925575573019 8.47193473835557 5.68387213957821 5.52793492172734 9.07534006465276 9.2087843644114 5.84246687115263 7.5265803464949 6.69939073125807 6.77784034182206 6.52167749415238 6.62876759019504 7.09692896481784 6.12245728588262 6.57844905487101 7.19709878937454 6.63618132718577 0.234569775049735 0.236326117875515 0.233990333029315 0.247667905818546 0.229913755554365 0.238023193172665 0.244891620828741 0.245678941293923 0.243656084776777 0.228551434328838 0.243109247612288 0.228551434328838 0.231496988592434 0.228551434328838 0.231242060234578 0.231672114602432 0.230146555962497 0.228551434328838 0.228551434328838 4 4|0 +|/ 5315886 5316805 5316421.222 5314902 5317453 + gene protein_coding_gene FALSE TRUE AT4G08390.1|AT4G08390.2|AT4G08390.3 SAPX; L-ascorbate peroxidase|SAPX Encodes a chloroplastic stromal ascorbate peroxidase sAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase S, chloroplast/mitochondrial precursor (EC 1.11.1.11) (Stromal ascorbate peroxidase) (sAPX) (AtAPx05) (APXS) [Arabidopsis Thaliana] (GB:Q42592;GB:Q9STM9); similar to TAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT1G77490.1); similar to stromal ascorbate peroxidase [Brassica oleracea] (GB:BAD14932.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.809850663565458 -10.1252414338562 5.41808358933460e-06 0.0380241106299502 10.2498558670185 14.5067517843529 -0.809850663565458 0.0618036549272198
AT4G23290_at 9.21634787674448 9.58463959126852 8.15031895423978 7.68024869653654 8.91990298083941 8.58765545446174 10.8673443604745 10.6321130058060 11.0097985671396 10.8573397401259 10.5569513080656 10.6165609413329 10.4171609501567 10.4550871190799 10.3473301440362 10.6690006192476 10.0812326402126 10.3545009439832 10.883554903563 0.173920591992598 0.156646352634270 0.180960582431364 0.184994352449072 0.162682824246744 0.167383847321276 0.161715435029799 0.162094753757126 0.172392099205834 0.164936152085346 0.171200313769202 0.156646352634270 0.159582527017207 0.166878398647293 0.168056146044897 0.158300372743750 0.177872019721663 0.175899505442588 0.162051449149406 4 4 - 12177957 12178458 12178130.375 12177748 12180836 - gene protein_coding_gene FALSE TRUE AT4G23290.1|AT4G23290.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11480.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.11012467036626 -10.1222889851521 5.43045969259084e-06 0.0381055356629099 10.2485034903084 19.8818842751500 -1.11012467036626 0.125070407217400
AT2G41100_at 11.4411850895726 11.4811801127972 12.1800604277638 12.2060239893304 11.3775461056209 11.1636548870172 8.92070889897624 8.81405132834503 11.6354042182869 10.1364966725317 10.9260124060668 11.2592637200741 9.69069473100642 10.8968665879666 10.6240899966946 10.4861514007973 9.7229914730541 10.7017454175426 10.0922168269428 0.108429486195018 0.105788961430192 0.111748845965236 0.108881087503516 0.107355433959099 0.110281032596309 0.121635054153334 0.117415000939903 0.1106933176705 0.113269662173570 0.106591354757221 0.107037514587535 0.11674392992472 0.105788961430192 0.112576567678951 0.106550926062200 0.116875375891311 0.113377993493583 0.107695235755672 2 2 + 17145942 17146458 17146248 17145157 17146690 + gene protein_coding_gene FALSE TRUE AT2G41100.1|AT2G41100.2|AT2G41100.3 TCH3 (TOUCH 3) encodes a calmodulin-like protein, with six potential calcium binding domains. Calcium binding shown by Ca(2+)-specific shift in electrophoretic mobility. Expression induced by touch and darkness. Expression may also be developmentally controlled. Expression in growing regions of roots, vascular tissue, root/shoot junctions, trichomes, branch points of the shoot, and regions of siliques and flowers. Identical to Calmodulin-related protein 3, touch-induced (TCH3) [Arabidopsis Thaliana] (GB:P25071;GB:Q38972;GB:Q39064;GB:Q8H1A0); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin-related protein (GB:AAC37419.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299)|similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin-related protein (GB:AAC37419.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299)|Identical to Calmodulin-related protein 3, touch-induced (TCH3) [Arabidopsis Thaliana] (GB:P25071;GB:Q38972;GB:Q39064;GB:Q8H1A0); similar to CAM7 (CALMODULIN 7), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G43810.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin-related protein (GB:AAC37419.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.742322194536742 10.0780216934807 5.61983381636172e-06 0.0394287540555938 10.2281456261930 21.5279761245466 0.742322194536742 0.0421767267286801
AT3G19550_at 6.74507342501055 7.46224596218971 8.24163731437485 8.28352114589108 8.61476172632106 7.93979644053567 4.04157583230452 4.45134496554992 3.04433636283690 6.6807612587859 5.16576937725225 2.62280910151353 4.82978159542308 5.12405245014755 3.12782073780098 4.22089049528176 5.9900511310751 5.94548285403786 3.22108220857863 0.287589233959612 0.296409632996927 0.300162507395421 0.297128319223027 0.289975018686407 0.298050903889219 0.283967002296603 0.283967002296603 0.290555648346580 0.286991760541535 0.285600364495307 0.300964494882663 0.291698358058120 0.288784030627285 0.294900769239486 0.292941110903384 0.289657099069752 0.290257168575384 0.289572307995003 3 3 - 6787477 6788140 6787631.091 6787247 6788298 - gene protein_coding_gene FALSE TRUE AT3G19550.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98694.1); similar to Os12g0507700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066848.1) 1.45390402579985 10.0734671374942 5.6397304652208e-06 0.0395627092135239 10.2260423959128 11.4443573487973 1.45390402579985 0.184737744889327
AT2G40080_at 8.05661040813319 8.36659980077331 6.63566433146051 6.80843345904854 7.8621723479618 7.12886465219242 3.96543771320908 3.84952155217514 4.3266832039482 4.08720930053584 5.73587386448 5.92844684664635 4.79254586189247 5.3339049400548 5.86427342038145 5.00392530467322 5.13981747904478 5.50882754372894 3.7665859952168 0.345315314616883 0.360910469231051 0.324019995699369 0.324932562501851 0.358011263339466 0.331936241338156 0.327916912462825 0.329234663428255 0.332926133230972 0.326945053790573 0.317205124543101 0.317205124543101 0.319880402931635 0.317471947205859 0.317818405937506 0.317205124543101 0.317205124543101 0.317205124543101 0.336621239781421 2 2 - 16741624 16741927 16741765.909 16741372 16741990 - gene protein_coding_gene FALSE TRUE AT2G40080.1 ELF4 (EARLY FLOWERING 4) involved in photoperiod perception and circadian regulation. ELF4 promotes clock accuracy and is required for sustained rhythms in the absence of daily light/dark cycles. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G29950.1); similar to Protein of unknown function DUF1313 [Medicago truncatula] (GB:ABE91668.1); contains InterPro domain Protein of unknown function DUF1313; (InterPro:IPR009741) 1.20126686840280 10.0682402923110 5.66266046204516e-06 0.0397179004807848 10.2236267141650 11.3209687368758 1.20126686840280 0.142401942438090
AT1G69840_at 9.64534131202664 9.84154415211327 11.0324796867578 11.0763971428648 10.2121935866888 10.2595947630181 9.20127931232885 9.50842157995854 9.21988716557273 8.5690318021168 9.40691311600255 8.74022223843591 9.4469234423563 9.31974568980605 9.11161126047563 9.52274925917385 9.48855590902168 9.20142357884852 8.45606267577639 0.0974689749417604 0.0998192322699368 0.103107355217372 0.102537356688878 0.100724799413399 0.0976678656708732 0.0977300301185857 0.102869359561214 0.109532913140212 0.107931300611068 0.0993430292173169 0.0976305333009154 0.0952259381717748 0.101318569867296 0.100761582602159 0.0980728241656091 0.103075345028119 0.103567442458772 0.0997741563279887 1 0|1 /|- 26297609 26298289 26297820.889 26297327 26299497 - gene protein_coding_gene FALSE TRUE AT1G69840.1|AT1G69840.2|AT1G69840.3|AT1G69840.4|AT1G69840.5|AT1G69840.6 band 7 family protein similar to band 7 family protein [Arabidopsis thaliana] (TAIR:AT5G62740.1); similar to hypersensitive-induced response protein [Cucumis sativus] (GB:AAQ72788.1); contains InterPro domain Band 7 protein; (InterPro:IPR001107) 0.813730276500992 10.0680983121579 5.66328476669646e-06 0.0397179004807848 10.2235610656457 19.1112040800965 0.813730276500992 0.0640553700737064
AT1G64710_at 6.8302076347477 6.99642306512925 8.5237931699838 8.87014167035112 8.31121787466797 8.41053376059067 5.75244191089428 6.17562256662581 6.2807057481605 6.08419731075839 5.56801528227813 6.30865171530021 5.77951212594574 6.13984199949937 5.46794203738406 5.29397455156495 6.28776597221505 5.70479186167194 5.53390552850857 0.286378592892039 0.286924140382246 0.290769273046345 0.296454757924301 0.30630771542292 0.294903551225988 0.279672831662218 0.279672831662218 0.283763806066198 0.286447816012521 0.287068645084507 0.282284638391236 0.280532881474933 0.279834877188243 0.279672831662218 0.280689561952694 0.288011476823976 0.279672831662218 0.286672116412844 1 1|0 +|/ 24049225 24049943 24049592.7 24048208 24050215 + gene protein_coding_gene FALSE TRUE AT1G64710.1|AT1G64710.2 alcohol dehydrogenase, putative|oxidoreductase/ zinc ion binding similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G32780.1); similar to ADH-like UDP-glucose dehydrogenase [Nicotiana tabacum] (GB:AAT40104.1); similar to Os10g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064203.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)|similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G32780.1); similar to Os10g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064203.1); similar to alcohol dehydrogenase [Nicotiana tabacum] (GB:CAA57446.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.97139511931954 10.0309583956944 5.82924928072206e-06 0.0408746959564231 10.2063340910742 13.3763384428113 0.97139511931954 0.100391151723448
AT2G40140_at 8.57671797471206 8.65090965538434 9.24384773413118 9.20810719175321 8.16561236682402 7.92427430401366 5.33622155408057 5.79141248932796 6.06850827647495 5.01562907468697 5.5504164888534 5.70710571958422 5.33639687151125 5.71204128522589 5.34077551504234 5.80488320827976 5.45524146262965 5.55815912453165 4.69430537368737 0.266502261060934 0.262669338817791 0.268277922795794 0.270776456426948 0.263832078810653 0.271434486461203 0.265239055978323 0.261875082897384 0.272199657414428 0.272218313886881 0.261875082897384 0.261875082897384 0.261875082897384 0.261875082897384 0.261875082897384 0.261875082897384 0.270825255896868 0.265310233452099 0.272999594176631 2 2 + 16780863 16781341 16781071.636 16779151 16781735 + gene protein_coding_gene FALSE TRUE AT2G40140.1|AT2G40140.2 CZF1/ZFAR1; transcription factor|CZF1/ZFAR1 similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G55980.1); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.922645765989228 10.0306606923449 5.83060123745314e-06 0.040878345275784 10.2061955663352 13.2709420926486 0.922645765989228 0.0902915324469755
AT1G11260_at 11.1642915289600 11.3659693405995 11.3346375040346 11.4653846343069 12.0143159520868 12.0542107682615 9.38633561600392 9.54032450999829 10.9250641220056 10.2824608892838 11.4552293032836 10.7482515533412 11.1363287704844 11.1468135843968 10.6933219133736 10.8317289508290 10.7785202885365 10.5270664355938 11.0314243475849 0.121817261845006 0.119202428142899 0.119993230125574 0.121351079388640 0.120915264710416 0.124200448082050 0.129054535740103 0.125477096658389 0.129676113846440 0.121925600006119 0.123345550757266 0.11873138298276 0.11873138298276 0.128037650753070 0.119700091015407 0.120738198303856 0.11873138298276 0.122088327687468 0.122739118726758 1 1|0 +|/ 3779449 3779968 3779738.333 3777329 3780337 + gene protein_coding_gene FALSE TRUE AT1G11260.1 STP1 (SUGAR TRANSPORTER 1); carbohydrate transporter/ sugar porter Encodes a H+/hexose cotransporter. Identical to Sugar transport protein 1 (Hexose transporter 1) (Glucose transporter) (STP1) [Arabidopsis Thaliana] (GB:P23586;GB:Q56Z12;GB:Q8H775;GB:Q8LBC8;GB:Q9SXB1); similar to STP4 (SUGAR TRANSPORTER 4), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G19930.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to glucose transporter, putative [Arabidopsis thaliana] (TAIR:AT4G21480.1); similar to monosaccharide-H+ symporter [Datisca glomerata] (GB:CAD30830.1); similar to monosaccharide transporter [Populus tremula x Populus tremuloides] (GB:CAG27609.1); similar to hexose transporter 1 [Juglans re (GB:AAY89231.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.760624056401892 10.0194289257736 5.88186314426848e-06 0.0412318606413221 10.2009641923885 21.8711707582504 0.760624056401892 0.04987846342282
AT1G30900_at 9.55177017785212 9.68265702071352 10.5088495605120 10.4616242828667 8.71746852412297 8.62181361000264 4.50970302146632 4.83510212543378 7.28450183659672 4.23925045193057 4.07699624089458 4.85065732396828 4.08580966791718 4.89092949461375 4.07039137815656 4.5205482810144 4.48492210788453 5.37511877404481 4.56411753245481 0.23771669521231 0.232160657468237 0.234937360776239 0.236434750526387 0.229081220930261 0.234929162599663 0.231796509612358 0.232320283373751 0.233940201675333 0.228844581505337 0.231887336817912 0.236682325117080 0.235051665278060 0.246327589337595 0.229475679144787 0.231585507575247 0.245344060901448 0.234038063191023 0.232817818685845 1 1|0 +|/ 10999503 11000460 11000033.556 10997256 11000524 + gene protein_coding_gene FALSE TRUE AT1G30900.1 vacuolar sorting receptor, putative Identical to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (VSR6) [Arabidopsis Thaliana] (GB:Q9FYH7); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT4G20110.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.2); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G34940.1); similar to Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa proaleurein-binding protein) (GB:P93484); similar to Putative vacuolar sorting receptor protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05373.1); similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (GB:Q9FYH7); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.807214646455341 10.0160775397913 5.897255684431e-06 0.0413338650921769 10.1994013021901 13.3146460064825 0.807214646455341 0.0634419511435655
AT4G17230_at 8.57635456773428 8.71971456358328 9.1303343479733 9.39968374165063 9.07544769190298 9.16090677155088 7.71461387191864 7.56370958066553 6.50592850279215 6.59960663068338 6.7893747102222 6.08756515560024 6.67955258357822 7.03336158102243 6.48262547815293 6.74115834528022 7.8274599284349 7.45445572928682 5.91800591726984 0.220664496528327 0.224648419877120 0.227576062080417 0.222415155780042 0.223847072531122 0.224647307253698 0.223734002597218 0.226270605176622 0.231896423996181 0.228767189933049 0.221740624182798 0.226784356381400 0.226482860309130 0.224541517372826 0.240220998390739 0.223136121292124 0.224812161186658 0.224008319342811 0.228374461615251 4 4 - 9661523 9661889 9661738.636 9660996 9663783 - gene protein_coding_gene FALSE TRUE AT4G17230.1 SCL13 (SCARECROW-LIKE 13); transcription factor Encodes a scarecrow-like protein (SCL13). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS family transcription factor [Brassica oleracea] (GB:ABD65110.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.796879415496401 10.0119337989541 5.91634928651127e-06 0.0414617757998710 10.1974676768493 15.2816579117203 0.796879415496401 0.0607361578133412
AT2G12400_at 7.01656303392437 7.00817774979827 8.02621378312212 7.73801531499972 8.40569325483863 8.20995063961512 7.88603581624606 7.62541482917409 7.19158485377635 7.10043662995337 8.47713425640446 7.83782493919585 8.54550946560735 8.20465237205922 8.21673954572684 7.71229169031733 8.31694071091612 8.47066404984542 7.39081570731899 0.157513534506739 0.160444956399483 0.160130167192947 0.158611785132657 0.166115649795284 0.165110174455959 0.159404912001657 0.161873360358777 0.186647382089480 0.170557198267564 0.153306177769626 0.156578638895989 0.154985187150198 0.155250027101343 0.165708129945168 0.157193091316757 0.163489593238459 0.163558785908341 0.168375144658398 2 2 - 5012226 5012805 5012503.727 5012025 5015404 - gene protein_coding_gene FALSE TRUE AT2G12400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25270.1); similar to H0306F03.12 [Oryza sativa (indica cultivar-group)] (GB:CAH68245.1); similar to Os04g0644000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054054.1); similar to Os02g0799300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048408.1) 0.853013811300517 9.9981208143953 5.98049441922281e-06 0.0419053243954942 10.1910122041254 15.4646740656024 0.853013811300517 0.0753070470683448
AT4G35480_at 7.68355488334338 8.1701480046603 7.8247828590538 8.02354499266056 8.42717143637666 8.56063312326455 6.54249412064937 6.70123941707039 6.64468348045768 6.2700516423321 7.23755235660118 7.14471392472454 7.64006310154691 7.72741377399504 7.08223827770353 6.99122232248134 7.07860014961016 7.400935530484 6.02753076018124 0.195701447909513 0.198806826700989 0.213339073482981 0.200071180100573 0.20019558474586 0.209458334208109 0.195439330161067 0.204185694766482 0.214004698572706 0.194973649798635 0.193439657693043 0.192539000165551 0.191446688621238 0.188628145605576 0.190880443022264 0.189213291838715 0.189873825070512 0.194061907412780 0.201038080513091 4 4 - 16852308 16852808 16852535 16852079 16852952 - gene protein_coding_gene FALSE TRUE AT4G35480.1 RHA3B (RING-H2 finger A3B); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA3b. Identical to RING-H2 finger protein ATL4L (RING-H2 zinc finger protein RHA3b) (ATL4L) [Arabidopsis Thaliana] (GB:Q9ZT49); similar to RHA3A (RING-H2 finger A3A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G17450.1); similar to zinc finger protein [Brassica rapa] (GB:ABK56013.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78080.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.954213899197184 9.9853035652019 6.04070675146613e-06 0.0423211915007717 10.1850085534707 14.5426616332850 0.954213899197184 0.0977860445908737
AT4G31550_at 6.47616769522006 6.41330497639372 6.54391437918047 7.044102471426 6.84897748064145 6.6761852147026 6.57664843934094 6.74244545513465 6.6279205103487 5.58519994551697 7.60400915184272 7.6321882324044 7.36788515761237 8.11528173359976 7.29633661424115 7.52444001431748 7.13481773499584 7.20125482359357 5.23740446627026 0.179747355226965 0.179747355226965 0.186716016579262 0.187700096768056 0.183230816037173 0.197566809700054 0.184483197091277 0.18496109096518 0.194126180407882 0.212468133288235 0.181620605750841 0.183718645579532 0.179747355226965 0.184264777029547 0.187220898700359 0.184995246635916 0.182480455318522 0.179747355226965 0.211202653660370 4 4|0 -|/ 15290130 15291060 15290854.2 15289953 15291545 - gene protein_coding_gene FALSE TRUE AT4G31550.1|AT4G31550.2 WRKY11 (WRKY DNA-binding protein 11); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (WRKY11) [Arabidopsis Thaliana] (GB:Q9SV15;GB:Q8H1G1;GB:Q93YX0); similar to WRKY17 (WRKY DNA-binding protein 17), transcription factor [Arabidopsis thaliana] (TAIR:AT2G24570.1); similar to WRKY transcription factor 11 [Capsella rubella] (GB:AAS66778.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 11 (WRKY DNA-binding protein 11) (WRKY11) [Arabidopsis Thaliana] (GB:Q9SV15;GB:Q8H1G1;GB:Q93YX0); similar to WRKY17 (WRKY DNA-binding protein 17), transcription factor [Arabidopsis thaliana] (TAIR:AT2G24570.1); similar to WRKY transcription factor 11 [Capsella rubella] (GB:AAS66779.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.946919143539612 9.96992448247806 6.1138439038576e-06 0.0428274765465225 10.1777876899358 13.3159024257739 0.946919143539612 0.096583367035429
AT3G50770_at 5.97394295302198 5.78424559831031 10.2735346265395 10.3991139013416 9.72570383715477 9.55196416721253 10.0343778715789 9.87488499996599 2.07662795902306 3.53277468757833 1.75984117252731 1.94148945564267 2.11470793203133 2.08348696831135 1.85104060909148 2.11916212948913 2.22267425265323 2.41258444182149 2.12010948960767 0.380285057339538 0.380266261554814 0.383325510521463 0.383228080789894 0.380651102648029 0.383556486701909 0.373792970079041 0.389630349079244 0.368105247636547 0.375160665500144 0.368513344525129 0.365150555663446 0.362667582003703 0.366649726021908 0.374984979808092 0.361780791103124 0.364154388904609 0.365935317614942 0.362630357161294 3 3 + 18884988 18885428 18885173.909 18884939 18885761 + gene protein_coding_gene FALSE TRUE AT3G50770.1 calmodulin-related protein, putative Identical to Calmodulin-like protein 41 (CML41) [Arabidopsis Thaliana] (GB:Q8L3R2;GB:Q9SVM1); similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G76650.1); similar to calmodulin-like protein [Musa acuminata] (GB:AAL06347.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.778667801067896 9.96188024171284 6.15249047494805e-06 0.0430920432865361 10.1740032092114 11.2720347021902 0.778667801067896 0.0567077424119063
AT4G11360_at 8.84768763493261 9.10184919397445 9.49205698208312 9.5240643402412 10.0607862437364 10.1191817959484 7.34266188581231 7.99551011254986 7.22594077345545 7.05030167302646 7.3695764231348 7.44823707608635 8.00040266052542 8.24190004002195 6.77243920379124 8.64290500209082 8.3026213724228 7.83464989869112 7.19464206801431 0.205431998129938 0.196203760873788 0.213245192643298 0.205321841648479 0.212062777634249 0.214432786767233 0.201293689624472 0.202906786177616 0.207322433712062 0.213881067227356 0.198435967876050 0.197376390317117 0.197025930014249 0.198348571866172 0.196234844585304 0.196565918679355 0.212957743401914 0.198637835291227 0.203703992459993 4 4 + 6906083 6906471 6906279.182 6906009 6906754 + gene protein_coding_gene FALSE TRUE AT4G11360.1 RHA1B (RING-H2 finger A1B); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA1b. Identical to RING-H2 zinc finger protein RHA1b (RHA1B) [Arabidopsis Thaliana] (GB:Q9SUS5;GB:Q9ZT51); similar to RHA1A (RING-H2 finger A1A), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G11370.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.07336254422424 9.94813143727166 6.21917266020425e-06 0.0435528661394104 10.1675229993440 16.5522512558736 1.07336254422424 0.121784681197370
AT1G13260_at 9.24183163887757 9.21895468541513 9.21779661854019 9.1954420529883 9.8628098788341 9.67335561872538 8.04484430793672 8.29094175155923 8.58135236860615 8.22481625017326 9.32558304550344 9.01126544182504 9.223165162887 9.52946693799231 8.67673791813117 9.10384867573595 9.093195932093 8.71936234968057 8.20496642495417 0.115383407489441 0.115961214995720 0.116252427846945 0.112922258509933 0.117258299060774 0.124047799255472 0.121703104835664 0.115817998717002 0.116460719461389 0.118684721292646 0.114786286870780 0.118127715010026 0.115406914242413 0.115365452852882 0.113151305352587 0.114083333281538 0.117418783506549 0.119160957143615 0.120912153756364 1 1 + 4542898 4543387 4543143.636 4542165 4543739 + gene protein_coding_gene FALSE TRUE AT1G13260.1 RAV1 (Related to ABI3/VP1 1); DNA binding / transcription factor Encodes an AP2/B3 domain transcription factor which is upregulated in response to low temperature. It contains a B3 DNA binding domain. It has circadian regulation and may function as a negative growth regulator. Identical to DNA-binding protein RAV1 (RAV1) [Arabidopsis Thaliana] (GB:Q9ZWM9); similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G25730.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.768245557364017 9.94410415917462 6.2388567327925e-06 0.0436844748430130 10.1656219619373 17.8044336678890 0.768245557364017 0.0540307451384626
AT4G39090_at 12.8911588672841 13.0737093874914 13.3464348548221 13.3697613593665 13.5374544761891 13.4257617460898 12.4977685978409 12.3217315950832 11.7140877841509 12.0877750360855 12.4822773498584 12.4488889980392 12.9346363157010 12.5558414770619 12.0349037914288 12.6486948699558 12.8282130261649 12.7165817742553 11.6197104335261 0.0836675559147262 0.0811007627990366 0.084045512793314 0.085645117181612 0.0848121068840321 0.0837166582017741 0.0811007627990366 0.0812900672303213 0.0997873376242165 0.0824509332363452 0.0811519156222229 0.083175764610734 0.0811007627990366 0.0868145718681807 0.0848397893805437 0.0815269621448769 0.0908043268271303 0.0842210118858083 0.0826063255910136 4 4 - 18215975 18216645 18216182.909 18215550 18217476 - gene protein_coding_gene FALSE TRUE AT4G39090.1 RD19 (RESPONSIVE TO DEHYDRATION 19); cysteine-type peptidase Similar to cysteine proteinases, induced by desiccation but not abscisic acid. Identical to Cysteine proteinase RD19a precursor (EC 3.4.22.-) (RD19) (RD19A) [Arabidopsis Thaliana] (GB:P43296); similar to cysteine proteinase A494, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT2G21430.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60581.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.748912306456336 9.93597503440361 6.27880039078687e-06 0.0439578815358989 10.1617807268872 25.2521955029687 0.748912306456336 0.0481244797374464
AT1G29720_at 7.32416797805874 6.88430334291679 6.30788784986224 5.73004477763242 6.25726844800618 5.77683783996642 8.41333596594363 7.9821339452981 9.40955208427263 9.12099156686665 8.41486271827485 9.08667325278738 7.64209679043459 8.49277409537456 8.09314477178189 8.02838308599995 7.25049773177886 8.12064263012032 8.99577444209278 0.183560792523286 0.181062980200451 0.18450423668287 0.187711964245305 0.182275602825900 0.185465648956700 0.181476029715696 0.185072608908892 0.183292680902002 0.182895314875503 0.175879396083644 0.175847601750906 0.179473789127764 0.180400488027679 0.174817620811632 0.175409214360808 0.204173259003176 0.182236377439661 0.18063222133157 1 1|0 -|/ 10393932 10394611 10394157.778 10393783 10395589 - gene protein_coding_gene FALSE TRUE AT1G29720.1 protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G29740.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -1.33364027951456 -9.92833459423005 6.3166017687886e-06 0.0442162123815202 10.1581655732878 15.4927843929504 -1.33364027951456 0.168151105848903
AT1G15670_at 8.96764227555465 9.39937042629954 8.54637098753747 9.3899029947224 10.01450774574 9.97908130954444 4.05092999057385 4.05512381230989 6.50941440208552 4.30354609440868 4.91984619047978 4.82249737713688 4.90469302585756 5.6241634052904 3.82613443158814 6.18477569494302 5.15457286871127 4.85383414379975 5.04118365206054 0.351528197630292 0.351617424576457 0.359545835715835 0.344296743562295 0.346932118369189 0.350001037456718 0.338012135722419 0.326781937661271 0.325623887042414 0.33168129767496 0.325623887042414 0.329985068708557 0.333397914384013 0.325623887042414 0.337579122610282 0.325623887042414 0.338661090508478 0.325623887042414 0.325623887042414 1 1 + 5390602 5391155 5390827.091 5389947 5391485 + gene protein_coding_gene FALSE TRUE AT1G15670.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G80440.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); similar to Os06g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057979.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 1.30789952962127 9.91432281016266 6.3865838730457e-06 0.0446997005274469 10.1515235528275 13.2108808719907 1.30789952962127 0.164101822540386
AT4G11890_at 8.37834957212787 8.37893555283207 9.8616761276599 9.50182323798211 7.43985245255535 6.74446603296191 3.19000719492722 2.98012059570577 5.61287236138889 3.58541616353907 4.21241061210749 4.56303533226584 2.68386953802221 3.91476309537023 3.25085364442763 4.07675125538286 3.76181799788317 3.54052583290545 3.01074200141366 0.292073078157587 0.291936564153587 0.303595767079655 0.297370224672311 0.294465592331262 0.295655578370379 0.274417887018502 0.274417887018502 0.280273334307046 0.279400084303064 0.274417887018502 0.274417887018502 0.29571427686283 0.278411294265647 0.278598748007575 0.274417887018502 0.282095075809667 0.290319787013434 0.275473305671895 4 4|0 +|/ 7149019 7149693 7149410.2 7148240 7149915 + gene protein_coding_gene FALSE TRUE AT4G11890.1|AT4G11890.2|AT4G11890.3 protein kinase family protein similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.16796390266166 9.88874187979605 6.51657923010762e-06 0.0456030214522931 10.1393565467484 10.9694939736738 1.16796390266166 0.140282032519088
AT3G21110_at 4.70094316160233 5.18618804071217 4.31036314784268 4.35010542047876 4.43323269395754 4.44966850778064 6.22632555356076 6.30830407046697 5.03836731364623 5.08637665728968 4.05129094542947 4.51737468499029 4.24345254683428 4.29858730184264 4.72037631071061 4.9067462426207 4.67874397484418 4.11638697343699 4.85731572182682 0.219502971633968 0.212164837882141 0.210057601015279 0.214970787659613 0.210057601015279 0.217148668749795 0.217807407737587 0.214261388694061 0.217161129771017 0.212781781276793 0.211938517431903 0.211673389975919 0.218286439863514 0.214602675503498 0.212130312440592 0.215241933697803 0.215210224199905 0.214728232736667 0.211522504081352 3 3|0 -|/ 7402715 7404141 7403575 7402487 7405647 - gene protein_coding_gene FALSE TRUE AT3G21110.1|AT3G21110.2 PUR7 (purin 7); phosphoribosylaminoimidazolesuccinocarboxamide synthase 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.|5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone. Identical to Phosphoribosylaminoimidazole-succinocarboxamide synthase, chloroplast precursor (EC 6.3.2.6) (SAICAR synthetase) (PUR7) [Arabidopsis Thaliana] (GB:P38025;GB:Q8RXX4;GB:Q9LJC1); similar to SAICAR synthetase (GB:AAA16231.1); contains InterPro domain SAICAR synthetase; (InterPro:IPR001636) -0.885998894534793 -9.86961928013453 6.61567379326644e-06 0.0462898695314853 10.1302266919737 9.71346120963834 -0.885998894534793 0.0854884178724412
AT2G39480_at 7.23999759564145 7.15196637548152 7.45672816708135 7.52615439639231 7.75500818738167 8.03365890703543 6.10346660054668 5.87344440011106 6.32384706260879 5.81808229111024 7.32486725836431 6.26057358315977 6.53407257791877 6.70130127208375 6.2801649989337 6.4886604612102 6.50505990773922 6.65927610465985 6.12955302099218 0.225702341962637 0.226913108714950 0.23287477089497 0.235416478490193 0.230381146024815 0.241048870080985 0.225686223710507 0.22451250946045 0.233309640125625 0.226515851807416 0.224271761322287 0.224271761322287 0.227831936539184 0.228028816620535 0.226502491466543 0.224271761322287 0.227404843074997 0.224271761322287 0.240711313625192 2 2 - 16485335 16485897 16485601.182 16484870 16492117 - gene protein_coding_gene FALSE TRUE AT2G39480.1 PGP6; ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 6 (P-glycoprotein 6) (MDR6) [Arabidopsis Thaliana] (GB:Q8LPT1;GB:O80635); similar to PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4), ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G47000.1); similar to PGP20 (P-GLYCOPROTEIN 20), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G55320.1); similar to Os01g0976100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045564.1); similar to Os03g0280000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049736.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59584.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.80221078356624 9.85993187081757 6.6665120001751e-06 0.046638917953225 10.1255902150410 13.4849236514151 0.80221078356624 0.0654700200335014
AT4G37540_at 4.94517366061162 5.47309970944239 5.13253965874498 5.58378782038808 5.59033629262104 5.37959877351518 7.3126163082001 7.49849811960887 6.87361122096491 6.67964061607772 5.78192925432842 5.15463485805322 4.15012926546675 5.30584759718121 5.272769268625 3.84316925813203 5.67446876264165 5.83406400558601 5.80231018513448 0.242066189273739 0.225538971413548 0.234360961192192 0.231471796461691 0.234786876094666 0.237954692899171 0.235891796569741 0.226164472732472 0.233975525947619 0.226406320776918 0.232637022577772 0.227995462562302 0.228746239559843 0.228937393515894 0.225260682734705 0.229956096953950 0.248914036983637 0.225260682734705 0.228366669326971 4 4 - 17639721 17640149 17639936.727 17639527 17640651 - gene protein_coding_gene FALSE TRUE AT4G37540.1 LOB domain protein 39 / lateral organ boundaries domain protein 39 (LBD39) Identical to LOB domain-containing protein 39 (LBD39) [Arabidopsis Thaliana] (GB:Q9SZE8;GB:Q8LBC9); similar to LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) [Arabidopsis thaliana] (TAIR:AT3G49940.1); similar to lateral organ boundaries domain protein [Caragana korshinskii] (GB:ABG90382.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -1.10525439339450 -9.85282735855277 6.70407113103655e-06 0.0468949775616007 10.1221850760971 11.6539465634636 -1.10525439339450 0.129651690951885
AT3G17820_at 7.76625953585136 7.64124369336069 7.17411142159682 7.3806996498981 7.43223592603714 7.84611231856964 5.08650196066632 5.40341269330427 5.00939157136182 5.19808585080617 6.22494266965442 6.83691100362875 5.87389570085292 6.27439734288423 6.47247371036564 5.80334798473783 6.0301773166479 4.99783608609418 5.24336817292591 0.211437489814171 0.211532725900556 0.209963749176577 0.214572934381633 0.214570265545649 0.20942294889449 0.219636632757898 0.221435175799757 0.2192993348807 0.209237456279855 0.209237456279855 0.212635486814960 0.214528773849557 0.210261770436565 0.216187247369631 0.215657229054687 0.210264721886495 0.216871654120712 0.226641962931838 3 3 + 6098709 6099377 6099047.455 6097420 6099601 + gene protein_coding_gene FALSE TRUE AT3G17820.1 ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6); glutamate-ammonia ligase encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-3 (EC 6.3.1.2) (GLN1;3) (Glutamate--ammonia ligase GLN1;3) (GS1) (GLN1-3) [Arabidopsis Thaliana] (GB:Q9LVI8;GB:Q5PNX0;GB:Q84W44); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT1G66200.1); similar to GLN1,4 (Glutamine synthetase 1,4), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G16570.1); similar to glutamine synthetase [Raphanus sativus] (GB:BAA04994.1); similar to Glutamine synthetase nodule isozyme (Glutamate--ammonia ligase) (GS) (GB:P32289); similar to Gln synthetase (GB:1804333D); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) 0.948950610028349 9.84795952270646 6.72994129989255e-06 0.0470692094514485 10.1198495823588 12.5735869458553 0.948950610028349 0.0994174173569323
AT1G53160_at 6.87965476134522 6.27181695694806 7.52488326463735 7.78835603524152 8.98744093677544 8.43616963267647 9.4485926952210 9.40943794677327 9.78034501013008 10.0734109347449 7.65583159238767 6.05429328716722 7.08689635130672 7.21905199695854 5.8583633844567 7.19786603938656 7.9734054841595 6.44537201829691 8.78371158566319 0.244148401195792 0.239090332060378 0.247386210318892 0.232350785403471 0.235242627886461 0.244082477380638 0.238413235237679 0.237601314988895 0.237772178694492 0.235467080967301 0.235345246339427 0.236439380348048 0.240696270202116 0.239287358860434 0.245063666845268 0.230341383945976 0.241852747517628 0.244175598585773 0.232299977512981 1 1|0 +|/ 19810261 19810706 19810439 19810087 19811276 + gene protein_coding_gene FALSE TRUE AT1G53160.1|AT1G53160.2 SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding / transcription factor|SPL4 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 4); DNA binding Encodes a member of the SPL (squamosa-promoter binding protein-like)gene family, a novel gene family encoding DNA binding proteins and putative transcription factors. Contains the SBP-box, which encodes the SBP-domain, required and sufficient for interaction with DNA. It is involved in regulation of flowering and vegetative phase change. Its temporal expression is regulated by the microRNA miR156. The target site for the microRNA is in the 3'UTR. Identical to Squamosa promoter-binding-like protein 4 (SPL4) [Arabidopsis Thaliana] (GB:Q9S7A9;GB:Q9SMX8); similar to SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G15270.1); similar to Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 (GB:1UL4); contains InterPro domain SBP; (InterPro:IPR004333) -1.2138003068268 -9.84720674490364 6.7339518296231e-06 0.0470905251445543 10.1194882413873 16.3343977934245 -1.2138003068268 0.149300933407350
AT4G30650_at 10.3675132370462 10.4419006542763 6.67337959417415 6.39820532614132 8.82848408282576 8.22138468710336 8.0510420468964 7.71281507820731 3.97418675925520 5.75382540589798 8.91036944203202 9.80091100882666 8.63151598425598 8.98837238366119 8.94230177251445 8.77053184406702 7.36711363426033 8.22430242072777 4.908785659216 0.212769358170808 0.221517068712483 0.218299697954138 0.229540817840865 0.205763450665043 0.205763450665043 0.208340122010032 0.208262436198702 0.236267369483455 0.213067584741627 0.205763450665043 0.211909084387659 0.210237634051358 0.218003284901879 0.208677409887034 0.207736906248908 0.226120163900965 0.205814257004884 0.223493234456007 4 4|0 +|/ 14954412 14954678 14954553.2 14954326 14954974 + gene protein_coding_gene FALSE TRUE AT4G30650.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At4g30650 [Arabidopsis Thaliana] (GB:Q9M095;GB:Q6IDS0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G30660.1); similar to salt and low temperature response protein [Brassica rapa subsp. pekinensis] (GB:AAT11798.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 1.10627018581236 9.845557500806 6.74274768527899e-06 0.0471452918154707 10.1186964257356 15.1285205480420 1.10627018581236 0.129989457996478
AT4G00490_at 7.86341372244175 8.19368200025321 7.3086827535885 7.1727283100361 6.82509312293458 6.8133923190729 8.0993913301776 8.22932843790613 7.80396565003205 7.799275089358 7.08470676552149 7.52374989676291 6.4140389018749 7.07435081538279 7.3804372206286 7.30952896144581 6.38325136743671 6.82494940346311 7.00767896524975 0.202883459305397 0.197087318465289 0.205014064773896 0.198118989672162 0.193532044888524 0.20611852555041 0.203265286624642 0.205779558565390 0.203684332455229 0.211105640100359 0.197875925022451 0.203008280130282 0.204596739216372 0.20137074765015 0.202892468533998 0.200342087346357 0.217931656653761 0.214017199069802 0.209153740121358 4 0|4 /|+ 224249 224819 224520.889 222320 225131 + gene protein_coding_gene FALSE TRUE AT4G00490.1 BMY9 (beta-amylase 9); beta-amylase similar to BMY4 (beta-amylase 4), beta-amylase [Arabidopsis thaliana] (TAIR:AT2G45880.1); similar to Os09g0569200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063976.1); similar to Beta-amylase (1,4-alpha-D-glucan maltohydrolase) (GB:O64407); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.802038157301024 -9.84239093034788 6.75967161383192e-06 0.0472568642522989 10.1171755062480 14.8313889502736 -0.802038157301024 0.0658020434970249
AT1G33600_at 9.20862736519838 9.68344991217208 10.2051537706463 10.2615414359109 10.7904132713267 10.3371714989367 9.78910180856088 9.73689296293306 9.08407147554698 9.23840829004578 10.5605400674103 10.7035470687758 10.7012215202776 10.3530099670285 10.0260821135754 10.414354714905 9.93239481203572 10.2620641465488 9.02896887233936 0.132225883683065 0.129865375781755 0.129961921903488 0.125041428975119 0.129682446243971 0.132249543694209 0.136366770514370 0.129752605950387 0.142250979272923 0.128738215107927 0.130393626056116 0.129406394913715 0.129018135660306 0.133610444933010 0.132093272143142 0.128545811565601 0.133948103102815 0.129747066310762 0.129026549910389 1 1 + 12181635 12182130 12181837.545 12180756 12182343 + gene protein_coding_gene FALSE TRUE AT1G33600.1 leucine-rich repeat family protein similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT1G33590.1); similar to H0402C08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86230.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 1.02302711866566 9.84050771719042 6.76975891546753e-06 0.047320614819118 10.1162706009710 19.7446946768591 1.02302711866566 0.114371968409967
AT4G24290_at 5.52307606662996 5.88703015711025 6.60550709369538 6.38409991260798 7.02656719300531 6.73343668581691 5.93243371416801 5.48569900685699 4.53742010988987 3.64724434586331 4.98032951779598 4.96695874490722 5.19073050609239 5.01906474290803 5.15238906508633 5.21901727109538 5.64180067311594 5.24914229343782 4.03154531568949 0.230153902609276 0.236082381925627 0.229618569561703 0.234870547645317 0.226649461353459 0.232923733968113 0.230173989470374 0.229591131797773 0.238825496977695 0.233407039603411 0.232300497734119 0.224183419288253 0.227284822075159 0.232791474031662 0.233687826648850 0.231196255826575 0.224439356391708 0.226040548119026 0.241954857014747 4 4|0 +|/ 12595504 12596527 12596074.6 12594294 12598038 + gene protein_coding_gene FALSE TRUE AT4G24290.1|AT4G24290.2 similar to NSL1 (NECROTIC SPOTTED LESIONS 1) [Arabidopsis thaliana] (TAIR:AT1G28380.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79564.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862)|similar to NSL1 (NECROTIC SPOTTED LESIONS 1) [Arabidopsis thaliana] (TAIR:AT1G28380.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE83668.1); similar to Os07g0166100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058970.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79564.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862) 1.04285108154038 9.8371488080848 6.78779218274523e-06 0.0474398795652064 10.1146558870397 10.8219807415459 1.04285108154038 0.118258663320279
AT4G02990_at 5.80651108351206 6.2040631837047 5.24707532631359 5.48912282842147 5.24454147823456 5.29127333076426 7.07963020962536 6.7013290885126 4.63546143977925 5.43163620624614 3.77879478573753 4.31674579346664 4.61336247472414 3.80150166793433 4.73017007030442 4.98937037968278 4.58640107592819 3.63253310989743 5.28335990044286 0.215260295186663 0.216791368684324 0.212409928104230 0.220522425485124 0.216045414319267 0.217436915294747 0.216582158827187 0.216311418155146 0.216724055864035 0.212409928104230 0.217454617248947 0.215709038725893 0.212409928104230 0.214519640617620 0.219254287555564 0.212960946825354 0.233062887344653 0.223923965871023 0.221290866021439 4 4 + 1323220 1323670 1323391.636 1321859 1324004 + gene protein_coding_gene FALSE TRUE AT4G02990.1 mitochondrial transcription termination factor family protein / mTERF family protein similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G44020.1); similar to Mitochodrial transcription termination factor-related [Medicago truncatula] (GB:ABE94205.1); similar to Os05g0404000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055500.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.97029470642593 -9.83150481777606 6.81821374946186e-06 0.0476456776812395 10.1119405965645 10.5944078670688 -0.97029470642593 0.104110794650298
AT4G20260_at 11.9311402256542 12.0657501610042 12.6902909502047 12.7283395945553 12.8811148511205 12.6750765000195 11.3852749240227 11.4811056491282 12.4598768866761 12.0222831621137 13.3248760065444 12.3013608653529 12.9415196773725 12.7336251514487 12.5650912140686 12.4206730987814 12.3768905013247 12.6083766512236 12.1688572611376 0.0758837411759714 0.0732879087451487 0.0726596828144921 0.0745072816767174 0.0740749373086988 0.0751798887787399 0.0726672261980176 0.0745216382770063 0.0792601686459581 0.0720525735433398 0.0733522934504085 0.0723797872375945 0.0728218787110039 0.0771837822984907 0.0737534899378005 0.0720525735433398 0.0777690338669717 0.0764731310263364 0.0733584381165238 4 4 + 10942099 10943200 10942796.273 10940746 10943571 + gene protein_coding_gene FALSE TRUE AT4G20260.1|AT4G20260.2|AT4G20260.3|AT4G20260.4 DREPP plasma membrane polypeptide family protein similar to DREPP plasma membrane polypeptide-related [Arabidopsis thaliana] (TAIR:AT5G44610.1); similar to plasma membrane polypeptide [Nicotiana tabacum] (GB:CAA69901.1); contains InterPro domain DREPP plasma membrane polypeptide; (InterPro:IPR008469) 0.734966804905758 9.82686534997924 6.8433342014847e-06 0.0478143760657736 10.1097066218929 24.6677903148339 0.734966804905758 0.046177672509711
AT1G70830_at 6.34676799493895 6.0211303113872 4.57007535963277 4.95720274423933 3.9521169808966 3.81631964701307 8.68244236432202 9.01291700516773 4.97326051090978 8.76138631910425 9.2200133557091 9.54888414142193 8.79069014191613 9.8220998119181 8.42131486037547 6.94455293280406 9.13061203524245 9.05775432191258 9.19447591524347 0.245246036027308 0.243157304597968 0.255737877082551 0.245685610855450 0.262717192325611 0.25529179616487 0.235498051868055 0.231822999484991 0.251312440822115 0.231822999484991 0.235174691464101 0.235211607932361 0.231822999484991 0.236927609402477 0.231914545481716 0.243919629399435 0.233271093091416 0.232045627176191 0.231822999484991 1 1 - 26713985 26714474 26714253.778 26713609 26715124 - gene protein_coding_gene FALSE TRUE AT1G70830.1|AT1G70830.2|AT1G70830.3|AT1G70830.4 Bet v I allergen family protein|MLP28 (MLP-LIKE PROTEIN 28) Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to MLP34 (MLP-LIKE PROTEIN 34) [Arabidopsis thaliana] (TAIR:AT1G70850.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916)|Identical to MLP-like protein 28 (MLP28) [Arabidopsis Thaliana] (GB:Q9SSK9); similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70850.2); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.983968225465943 -9.8158086647659 6.9036158873451e-06 0.0482286605889928 10.1043755410562 14.1748871085739 -0.983968225465943 0.107176864698593
AT1G68540_at 5.46768640908296 5.29643977599344 4.03164231344699 4.38605765990838 5.06280585347714 4.82230170885655 6.65936420007845 6.3760225656805 4.47329735243392 5.22924717729841 4.06398806268171 4.35684111227801 4.53252869897349 4.90744398447035 3.96737927253282 4.05895994000259 4.82703688023379 4.37216918376628 4.83822002563558 0.230062887419911 0.229203555890729 0.228004178588175 0.224805089492250 0.216362506559337 0.223393721207357 0.22141014704031 0.226350098570487 0.225944048440326 0.219854321281706 0.216362506559337 0.223982994103379 0.221198467792405 0.217258728046021 0.217460985979115 0.216362506559337 0.218591010979695 0.218947198531048 0.219424035752085 1 1 + 25724201 25724872 25724468.727 25723689 25725028 + gene protein_coding_gene FALSE TRUE AT1G68540.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G25460.1); similar to dihydro-flavanoid reductase-like protein [Zea mays] (GB:AAK52955.1); similar to Os01g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041904.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.917652240187579 -9.8056599515459 6.95946635071556e-06 0.0486118724597482 10.0994734057768 9.87914751597723 -0.917652240187579 0.0936832301662172
AT2G10940_at 10.0854959246034 10.6580344049879 4.79146156012965 5.08436604727703 8.76948839776468 9.2897064662949 9.40789093328723 10.1982102162877 11.7253105350352 10.9778902910781 12.5414479426199 12.2315481459402 11.7081475817329 11.4920791765833 12.4386915800447 11.0166818301053 9.03321781269686 11.8383151426245 11.5387315355427 0.129699677988252 0.129699677988252 0.188761674259175 0.171848111713330 0.136826029073777 0.143835161785132 0.135205460212432 0.135157934931937 0.141347145763889 0.131297742603656 0.133538251208884 0.132406064141827 0.133900956771097 0.13515068724036 0.133030942995607 0.129699677988252 0.14675007442438 0.129699677988252 0.132728297710700 2 2 - 4318260 4318598 4318432.182 4317494 4319185 - gene protein_coding_gene FALSE TRUE AT2G10940.1|AT2G10940.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71274.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.49005677713341 -9.77323475707891 7.14129682952361e-06 0.0498748170573929 10.0837541449563 20.0113285465434 -1.49005677713341 0.197981248567749
AT4G01660_at 5.61635616957098 5.28051553318862 5.30593361137272 5.14869541483855 4.71965797742674 4.61108575637332 6.1053414461857 5.92787228667101 4.08600892779114 4.61209107874734 3.58390792139951 3.35864547063170 3.51962302960424 3.65606037874225 3.69151250092714 4.02065382869714 4.10837371883005 3.50776742705782 4.94217855126922 0.253930083568545 0.258725243948045 0.257082855244623 0.255484739897735 0.252240584432793 0.256185679705809 0.253381324217763 0.25398681392765 0.251735780005928 0.250536133460710 0.257210621088780 0.250564686211784 0.257996730135907 0.255901816471308 0.252539860666421 0.255376009570875 0.263001890031285 0.250636052783164 0.253375175444796 4 4 + 710469 711051 710848.727 708544 711256 + gene protein_coding_gene FALSE TRUE AT4G01660.1 ABC1At (ARABIDOPSIS THALIANA ABC TRANSPORTER 1) Encodes an ABC1-like protein, member of the ATH subfamily; putative ABC transporter; isolated by functional complementation of a yeast abc1 mutant similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.2); similar to ABC1 protein [Capsella rubella] (GB:AAM18498.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.826059826842123 -9.76453376002227 7.19098219771681e-06 0.0502146286866565 10.0795212269977 9.45322105133118 -0.826059826842123 0.0735830411081689
AT3G08690_at 8.67391171975265 8.8584409551476 9.53061192085002 9.47670731648869 9.4346890031955 9.49091572659233 8.19925867266439 8.60869013935786 7.53220382992133 7.91264590608736 8.6059101543012 8.21235418315066 8.78240999070527 8.35372338175608 8.1265321895186 8.77739418334924 8.87784354857406 8.3137874622026 7.68175041526518 0.146655717604453 0.146671105561619 0.148834187157679 0.154852823667723 0.149674135574277 0.154744536936201 0.155452519778008 0.145969265487419 0.15954308354884 0.154173088861162 0.150744655497004 0.154062445197127 0.150570043828325 0.162602810785056 0.150342848551024 0.146314372672168 0.163569970026486 0.147416690791591 0.159110018422972 3 3|0 +|/ 2641513 2642440 2641972.333 2641062 2642694 + gene protein_coding_gene FALSE TRUE AT3G08690.1 UBC11 (ubiquitin-conjugating enzyme 11); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2-17 kDa 11 (EC 6.3.2.19) (Ubiquitin- protein ligase 11) (Ubiquitin carrier protein 11) (UBC11) [Arabidopsis Thaliana] (GB:P35134;GB:Q9M9J1); similar to UBC10 (ubiquitin-conjugating enzyme 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to ubiquitin conjugating enzyme [Zea mays] (GB:AAB88617.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.847766644827217 9.76234093031115 7.20356437278696e-06 0.0502952864507986 10.0784534539586 17.1417087336491 0.847766644827217 0.0788780643131526
AT4G23150_at 8.65438451840864 8.67718473416116 9.85174297609667 9.89373100006754 7.50576705092015 7.78547622474741 1.36931692115711 2.04741096649477 5.52625578278869 3.10799341554516 2.69435996702829 2.59749556044613 2.70547915621614 2.84405562501362 2.30511273068816 3.2369569488978 2.73346985539689 2.95201898664158 3.86658640407690 0.224694996657787 0.232138631634147 0.226067315222873 0.228684889989549 0.244140386000029 0.232571273623613 0.241253364343964 0.231966444575952 0.256524860752268 0.224694996657787 0.230218458238727 0.231974741585519 0.234017137974593 0.230011631894726 0.238485231479315 0.226727445578777 0.230413692038378 0.224772361217947 0.230341533339667 4 4 + 12127621 12128287 12128033 12125742 12128343 + gene protein_coding_gene FALSE TRUE AT4G23150.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to CRK10 (CYSTEINE-RICH RLK10), kinase [Arabidopsis thaliana] (TAIR:AT4G23180.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Arabidopsis thaliana] (TAIR:AT4G23140.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.08188921544501 9.76118705028562 7.21019499726241e-06 0.0503343712758889 10.0778914251293 10.4359087013040 1.08188921544501 0.127207726716501
AT1G09750_at 8.9669262921884 9.15025166929694 3.22811985986025 4.0306538773448 6.66925654010166 6.74451643744697 7.08965629049655 7.56062644061062 8.65018466049115 7.98490602583974 9.50719876133445 9.98090397564961 8.34002339558564 8.33689618934431 10.2971434815601 8.01457969459972 6.5555969219178 9.15010053681756 8.33517797669384 0.188188097394405 0.187986954451685 0.233473239444661 0.232891109067043 0.192368654737872 0.203855056208049 0.181803880729711 0.185045624383948 0.188011050849252 0.186413436755571 0.181803880729711 0.183960305423822 0.185883396381811 0.188497724530426 0.189099847495626 0.183210544689662 0.206156784424132 0.185416300622391 0.186912928142184 1 1 + 3158328 3158933 3158666.727 3157503 3159147 + gene protein_coding_gene FALSE TRUE AT1G09750.1 chloroplast nucleoid DNA-binding protein-related similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G54400.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71208.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -1.28717300626674 -9.73355435742703 7.37102369206783e-06 0.0514497453706335 10.0643990781528 15.2281150545563 -1.28717300626674 0.164642753582110
AT2G36390_at 8.78947318537192 8.47339105083198 8.84985329298929 8.63064536842475 9.36475932917712 8.90585149094661 7.93226288755907 7.38477613430288 5.5442861538964 7.04856478056968 8.20294500903313 7.91305655988122 7.99522660825367 7.66137491308322 7.87403660263048 7.45481266720587 8.54056859856065 7.6803374263039 6.66944173897234 0.175225597890414 0.177592776862543 0.183221473982008 0.176423463320687 0.175481537740891 0.178259508348432 0.180646138267923 0.178596691315025 0.196720396850614 0.187721635447605 0.178049140639908 0.175225597890414 0.183539746063699 0.181986413791680 0.188590512041214 0.175225597890414 0.176997457747035 0.191130609440436 0.182205922785463 2 2 + 15276382 15276993 15276698.182 15271316 15277171 + gene protein_coding_gene FALSE TRUE AT2G36390.1 SBE2.1 (STARCH BRANCHING ENZYME 2.1); 1,4-alpha-glucan branching enzyme Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues. similar to SBE2.2 (STARCH BRANCHING ENZYME 2.2) [Arabidopsis thaliana] (TAIR:AT5G03650.1); similar to starch branching enzyme I [Pisum sativum] (GB:CAA56319.1); similar to starch branching enzyme class II (GB:AAB03099.1); similar to starch branching enzyme II [Solanum tuberosum] (GB:CAB40743.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) 1.14366606475376 9.67714022262313 7.71187493787102e-06 0.0538211751914018 10.0366551558605 15.7094061037497 1.14366606475376 0.140408899308204
AT3G21750_at 6.648087865945 7.09833483044746 5.46926320269381 6.21043299982103 5.6340002470322 5.58395740196981 7.04430248675726 7.34246505093332 6.17424765359524 6.53422674251998 4.48789606560128 4.75269519161815 4.59739200121763 4.52583663971383 4.69780167085664 5.76976934537127 5.20114774705266 5.44303829602588 5.63759482122783 0.212517966492529 0.210844953867140 0.210877051805429 0.208972389574235 0.206531278751206 0.214374139618964 0.209596561155126 0.215986826701501 0.219026778184753 0.215391482172766 0.218221952081403 0.205103248397437 0.210148404067412 0.209201476722095 0.207983571941699 0.209939181685337 0.208301428340820 0.213989672479390 0.207942956831521 3 3 + 7665419 7665933 7665634.091 7664352 7666202 + gene protein_coding_gene FALSE TRUE AT3G21750.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21760.1); similar to glucosyltransferase NTGT3 [Nicotiana tabacum] (GB:BAB88934.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -1.24489669087020 -9.65998691879215 7.81895448061539e-06 0.0545606643657342 10.0281661965336 11.9037572734316 -1.24489669087020 0.158933557590586
AT1G28520_at 5.47489092830359 5.7276074233517 6.41778445393088 6.30274711539354 5.98575161218445 6.17040093953063 4.97560319378092 5.19485586102006 4.88876005100218 4.83426465881265 5.56730634913714 5.03891494482917 5.45730375754036 5.27666827600121 5.09594555830016 5.71838643933813 6.22625542222427 5.46531608359677 4.56104948126954 0.214170452262198 0.222428835155810 0.222920925024382 0.226861750968275 0.222258290361131 0.229706838535122 0.220081997431243 0.221758008931721 0.216076131390192 0.212988301962654 0.213544000535656 0.218082928516635 0.216901581081339 0.221530663236985 0.217783554471347 0.213991676501755 0.217771713465885 0.218218552569517 0.218624641945735 1 1|0 +|/ 10030780 10031441 10031137 10029136 10031969 + gene protein_coding_gene FALSE TRUE AT1G28520.1|AT1G28520.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42400.1); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105) 0.797667859410957 9.6379459498746 7.95897466287648e-06 0.0555297662228892 10.0172217929601 10.9022652747198 0.797667859410957 0.0690629752348325
AT4G31130_at 8.5778167619337 8.66427635413213 8.65388506413437 8.92217903052778 8.95254354707744 8.82170137893133 7.81879062536018 7.82482723326639 7.21345724164143 6.77190179603628 7.5634814491444 7.70288592137363 8.19050786437524 7.96106628927145 7.40557464646631 8.13690026237464 8.36568452799203 7.1310064670501 6.82452685773681 0.183711868925488 0.185146319943455 0.193692452883132 0.196653943758673 0.192351981562924 0.199819341327800 0.183711868925488 0.188424776675703 0.218192500396516 0.198086972645279 0.197414888221414 0.190870558625981 0.18892753601427 0.191064491160462 0.190670351425969 0.193799342942475 0.191530319064070 0.198313782492326 0.201010133560922 4 4 - 15137183 15138431 15137528.636 15136941 15138846 - gene protein_coding_gene FALSE TRUE AT4G31130.1 similar to Protein of unknown function DUF1218 [Medicago truncatula] (GB:ABE80387.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.743329654097884 9.63157622835232 7.99995627923925e-06 0.055807695003973 10.0140512296102 15.9013860295758 0.743329654097884 0.053789951516043
AT4G05590_at 8.78244212165935 8.8196315917198 10.0156627444833 9.76923564354088 10.0086151182011 9.76366743297063 8.234066947909 8.5463298753072 6.84917004237757 6.96693498674997 7.23502283915114 7.10954740423318 7.4415093581637 8.04090508616398 5.99630890072783 7.5878837438778 8.04265363702853 7.12646990042457 6.96528268891267 0.254769919955715 0.254080169814303 0.2600392547574 0.262506021912948 0.255964695742302 0.255146505116342 0.250729904311611 0.25131472389934 0.265470612191529 0.254548048098478 0.252077285720946 0.250729904311611 0.252502026496515 0.250729904311611 0.254796734024032 0.25706005995649 0.265440155992344 0.263803021375746 0.250729904311611 4 4|0 +|/ 2907191 2908033 2907758.714 2907062 2908553 + gene protein_coding_gene FALSE TRUE AT4G05590.1|AT4G05590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22310.1); similar to Protein of unknown function UPF0041 [Medicago truncatula] (GB:ABD28486.1); contains InterPro domain Protein of unknown function UPF0041; (InterPro:IPR005336) 0.844542985012374 9.61791237964805 8.08865910670039e-06 0.0564183972692352 10.0072383118135 16.3672898585080 0.844542985012374 0.0810991241239087
AT2G20060_at 7.47088439348398 7.67317561937593 7.02708342427168 7.28940073467205 6.55935789895547 6.72137388331229 7.7303523879629 7.88633947728447 6.4238746252181 6.57443080354765 5.20456718724538 5.65534678455247 5.76037154460326 5.5807318832573 6.28757871084699 5.6146662660279 6.39232392516397 5.54539068651882 6.6727472314998 0.215604046668422 0.215937395881697 0.219690545375805 0.219478984056836 0.219161854436418 0.217929186520991 0.215604046668422 0.215604046668422 0.229885572642872 0.218612757100789 0.221557224267042 0.223411231425113 0.216290366160992 0.220592674749409 0.215604046668422 0.215951098452893 0.225706858981744 0.223797949390985 0.215604046668422 2 2|0 +|/ 8667375 8668284 8667928.6 8666124 8668570 + gene protein_coding_gene FALSE TRUE AT2G20060.1 ribosomal protein L4 family protein similar to RPL4 (ribosomal protein L4), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07320.4); similar to Os12g0488600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066789.1); similar to 50S ribosomal protein L4 [Rickettsia bellii RML369-C] (GB:YP_538231.1); similar to Os11g0585700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068165.1); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136) -0.79638970705939 -9.61203163854568 8.12717107718813e-06 0.05667889109231 10.0043012160279 13.4508158158893 -0.79638970705939 0.0692895968369348
AT4G33430_at 7.88843453648097 7.86390783324016 7.79977997890445 7.93033662110098 7.60054534779683 7.66696233375044 5.90311326187585 6.22158474731015 6.56214829634476 6.29563542017535 7.21243531632718 7.32747390663805 6.81007615854339 7.40293185838183 6.91468604387198 7.21032813178672 7.16451346342236 6.77573170419117 6.19913290496231 0.193357984988947 0.191289590405818 0.191330826449432 0.194444934925541 0.196145461676599 0.205568486605115 0.204686495532906 0.193053498716086 0.205359932198148 0.200748919488809 0.190021582209883 0.189032708046028 0.197309422727011 0.193124767189111 0.197028856080571 0.191819771136441 0.204171128234832 0.198907083253165 0.189032708046028 4 4 - 16086679 16087283 16086994.455 16086409 16090774 - gene protein_coding_gene FALSE TRUE AT4G33430.1 BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE); kinase Leu-rich receptor Serine/threonine protein kinase. Component of BR signaling that interacts with BRI1 in vitro and in vivo to form a heterodimer. Brassinolide-dependent association of BRI1 and BAK1 in vivo. Phosphorylation of both BRI1 and BAK1 on Thr residues was BR dependent. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. Identical to BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor (EC 2.7.11.1) (BRI1-associated receptor kinase 1) (Somatic embryogenesis receptor-like kinase 3) (BAK1) [Arabidopsis Thaliana] (GB:Q94F62;GB:Q9SZC0); similar to SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G71830.1); similar to SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G34210.1); similar to ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4), protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13790.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase [Cocos nucifera] (GB:AAV58833.2); similar to benzothiadiazole-induced somatic embryogenesis receptor kinase 1 [Oryza sativa (indica cultivar-group)] (GB:AAR26543.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.765056254031293 9.60880773308998 8.14837018898805e-06 0.0568185853278137 10.0026898039773 14.0866218892522 0.765056254031293 0.0608113938553678
AT1G67660_at 7.98653778545202 8.24649373079883 8.2267103459233 8.08527270825625 8.59584535745775 8.15512124056793 7.5023880289776 7.1535490172303 5.60397639908173 6.2920212523603 7.37146803721781 7.49800994444043 7.46748027058725 7.59731171174709 7.57489809022905 7.15659096986293 7.55096095316556 7.11533723615254 6.13901193161064 0.189711354315210 0.190032799426673 0.196940799208647 0.203002628489442 0.200672997920416 0.195756952391488 0.192260731221040 0.19436016706166 0.220419230840250 0.197586909858191 0.196131646905882 0.189711354315210 0.197341402601873 0.189711354315210 0.198205935959789 0.189711354315210 0.193020277902034 0.202103476321216 0.202495972959853 1 1 + 25368150 25368706 25368396.636 25367198 25368892 + gene protein_coding_gene FALSE TRUE AT1G67660.1|AT1G67660.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13810.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05466.1); contains domain no description (G3D.3.90.320.10); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992:SF3); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992); contains domain Restriction endonuclease-like (SSF52980)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13810.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05466.1); similar to Os08g0236700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061316.1); contains domain no description (G3D.3.90.320.10); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992:SF3); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992); contains domain Restriction endonuclease-like (SSF52980) 0.974166281547198 9.58332307370397 8.31812287912358e-06 0.0579939527132496 9.98992040645076 14.7080782831794 0.974166281547198 0.109928281251299
AT2G40110_at 6.2588976966706 6.32514584632976 6.17341726429688 6.04798479998117 6.92451958481818 6.58313554364495 3.70894039032765 3.57173765756805 4.49813311763354 4.64161633070449 4.19950216041488 5.09804359060469 4.88968340999537 5.0002222112151 4.13319216553803 5.24191403969961 5.03199826563302 4.49639873259158 4.80758102022386 0.201702267385538 0.197931876343958 0.197357817273507 0.202649179979121 0.205692277811628 0.200896806485253 0.199797701348675 0.203524122784608 0.198610990690606 0.194413091035338 0.197885067364230 0.192992376045281 0.192159669689467 0.199512707574135 0.200621823624031 0.190607070617283 0.221379218830674 0.190607070617283 0.194356545813531 2 2|0 +|/ 16755242 16756370 16755829.375 16755018 16756623 + gene protein_coding_gene FALSE TRUE AT2G40110.1|AT2G40110.2 yippee family protein similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT3G11230.2); similar to Protein yippee-like (GB:P59234); contains InterPro domain Yippee-like protein; (InterPro:IPR004910)|similar to yippee family protein [Arabidopsis thaliana] (TAIR:AT3G08990.1); similar to Protein yippee-like (GB:P59234); contains InterPro domain Yippee-like protein; (InterPro:IPR004910) 0.789171533117758 9.57299981631489 8.38799932984652e-06 0.0584727433283601 9.98473193757134 10.4044620870291 0.789171533117758 0.0682392467040646
AT2G39190_at 6.70935738865665 6.6143237212965 6.51082575582255 6.63046034501153 7.53080842237391 7.45369229385683 7.73204774465398 7.12761027990335 4.4163462276974 4.08452243423918 5.33467434176803 5.5358216967038 6.44557973346972 6.27917877872588 6.81710235120534 5.94369653372934 6.0511370354076 5.84063133012119 3.75320659137336 0.219031817800805 0.216688546290523 0.21906723064243 0.210670447648011 0.207875528921661 0.210095373523860 0.212250983364613 0.209551780332411 0.227078012411835 0.213945144374918 0.214968400206835 0.209898323343077 0.218592951389808 0.212774801058208 0.215204153517360 0.210069822342306 0.217999417851296 0.221113671513828 0.212487942396975 2 2|0 +|/ 16358424 16359709 16359041.5 16357046 16363041 + gene protein_coding_gene FALSE TRUE AT2G39190.1|AT2G39190.2 ATATH8 (ABC2 homolog 8) member of ATH subfamily similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G71810.1); similar to Os02g0805800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048444.1); similar to putative ubiquinone biosynthesis protein ubiB [Oryza sativa (japonica cultivar-group)] (GB:BAD19381.1); similar to Putative ABC transporter [Oryza sativa] (GB:AAK98701.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147)|similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT3G24190.1); similar to Os02g0805800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048444.1); similar to putative ubiquinone biosynthesis protein ubiB [Oryza sativa (japonica cultivar-group)] (GB:BAD19381.1); similar to Putative ABC transporter [Oryza sativa] (GB:AAK98701.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) 0.965948947338315 9.5612109940447 8.46859352849089e-06 0.0590260968935815 9.97879564590305 12.0964754820693 0.965948947338315 0.108712958942495
AT1G35230_at 7.43821518499363 7.84486640768068 9.13692816610227 9.33382534905663 6.37190180997066 6.89906602214015 1.59202232701378 2.22036285031945 4.83964184191258 3.08181143961293 2.94840387566044 3.63600528127352 2.13547637560503 2.89757216780799 3.07814251912333 2.61733862306654 2.65484250113570 2.51100912861524 2.50051852753572 0.291061057560808 0.291878180288543 0.291478012168406 0.287006606325364 0.297838386995622 0.297766820323807 0.293497191659566 0.287006606325364 0.292882316697343 0.287006606325364 0.296926432682546 0.287006606325364 0.287006606325364 0.287006606325364 0.287471798529747 0.287006606325364 0.292429686445974 0.287184760511094 0.28864388551441 1 1 + 12917360 12917492 12917430.727 12917127 12917741 + gene protein_coding_gene FALSE TRUE AT1G35230.1 AGP5 (ARABINOGALACTAN-PROTEIN 5) Encodes arabinogalactan-protein (AGP5). Identical to Classical arabinogalactan protein 5 precursor (AGP5) [Arabidopsis Thaliana] (GB:Q8LCE4;GB:Q9ZT15); similar to AGP10 (Arabinogalactan protein 10) [Arabidopsis thaliana] (TAIR:AT4G09030.1); similar to putative arabinogalactan-protein precursor [Nicotiana glauca] (GB:CAH69225.1); contains domain PRICHEXTENSN (PR01217) 1.24871092516555 9.55359248456017 8.52113424400063e-06 0.0593837845464404 9.9749529440158 9.49656822068785 1.24871092516555 0.162048634594297
AFFX-Athal-GAPDH_5_s_at 9.80869539284695 9.76804928189554 10.2796931346162 10.1711946418547 10.0306625840574 9.7394532229733 10.0858300312142 10.0458144401465 8.345572113794 8.53932418073349 9.6389462773331 9.96079016055134 9.64543615965761 9.66831752828945 9.99685555393114 9.51283478441894 9.60661680728436 9.39496466313365 8.10031483187685 0.127744510996732 0.127469327523636 0.127941202043647 0.126277482183616 0.123606184549596 0.126288389491220 0.128316036712423 0.130993887931505 0.138929473878029 0.142478835227265 0.124226580752722 0.125273683760378 0.127925942234855 0.130332057773507 0.124509101704172 0.128761891535187 0.130284093267527 0.135327901806279 0.152144544180822 NA NA NA NA NA FALSE FALSE 0.738922571186556 9.53782806176937 8.63100508957146e-06 0.0601408434641339 9.96698557572864 18.9944235665138 0.738922571186556 0.054677652469397
AT2G23470_at 5.42162963298189 5.2864198161072 5.15524093233796 5.00530626055056 4.99359921360441 4.8704397135227 6.19036677396095 6.1210123170194 4.39970063764111 4.93192787810069 4.28877664659173 3.693542540431 4.14295843842033 3.51088498981524 3.83297120832489 4.26965368965814 4.56855131358558 4.16043696439118 4.81905701661988 0.249670089473743 0.239702224176232 0.243130685903529 0.238261613145335 0.239515945821775 0.244414837360256 0.248767386840648 0.245841807930824 0.249618864075045 0.24472837101879 0.245262635654661 0.241843796294675 0.240947285580421 0.240887463558276 0.249469286766428 0.243341706992232 0.242331089437349 0.241931221669578 0.238521504782571 2 2 - 10006318 10006920 10006650.545 10006062 10008589 - gene protein_coding_gene FALSE TRUE AT2G23470.1 similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to putative glutamate/ornithine acetyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55003.1); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968) -0.703566904282541 -9.53506987085643 8.65038949420085e-06 0.0602672636060973 9.96558936700448 9.76818540818871 -0.703566904282541 0.0426503053160816
AT1G66230_at 4.84903666999046 5.05109533799158 3.91760624188644 3.82984459908595 4.81571066673119 4.87618294075536 6.94410572573007 6.17480602223879 6.82102796782736 6.58747651777554 6.55202961795312 6.03239503149983 5.8975988498843 6.2562945067471 5.67284004514452 6.1536176038031 5.17622882661309 6.08501231958816 7.0389039029767 0.24018195730747 0.237704400916497 0.267565136622666 0.258370948411967 0.246169441518495 0.254453237427221 0.247585356673291 0.245139676163708 0.256849892569896 0.237704400916497 0.240035774361199 0.241678494224677 0.239217850443541 0.247937909170824 0.243263110377744 0.237704400916497 0.249337208376634 0.237704400916497 0.253423739389121 1 1 + 24681330 24681880 24681623.636 24680817 24682078 + gene protein_coding_gene FALSE TRUE AT1G66230.1 MYB20 (myb domain protein 20); DNA binding / transcription factor Encodes a putative transcription factor (MYB20). similar to MYB43 (myb domain protein 43), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G16600.1); similar to myb-related transcription factor [Solanum lycopersicum] (GB:CAA67600.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.11623776145602 -9.5147270381442 8.79485845991139e-06 0.0612649840317427 9.95527131648777 11.4543259737249 -1.11623776145602 0.138876636290773
AT2G21385_at 8.32807654469796 8.05159135389628 7.13446548354781 7.07676276433789 7.54309170703308 7.55822788482974 8.8913098968011 8.60859139783171 8.70158437514622 8.92988872194055 8.28451537354929 8.81445763645868 8.12980557355458 8.36908524827125 8.98313238741519 8.54853768112958 8.05667906311021 8.08959963945713 8.8946578750813 0.139069406039727 0.139987436254119 0.144434594434275 0.148600664579377 0.139239723767588 0.136971692440105 0.139118351238302 0.1412850381548 0.14537947111373 0.137256474069149 0.145366205880531 0.135369506212631 0.147764866236472 0.142510279431302 0.135209487344095 0.137522721149906 0.144066703544338 0.143083463789109 0.134896102749045 2 2|0 +|/ 9157787 9158757 9158269.778 9156723 9158978 + gene protein_coding_gene FALSE TRUE AT2G21385.1|AT2G21385.2 similar to Os09g0531100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063753.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89529.1) -0.787161210195374 -9.50440815539334 8.8691618119371e-06 0.061773712020142 9.95002371947632 16.5247747455007 -0.787161210195374 0.0692072664074372
AT3G47420_at 7.1408833842 8.01684151090985 8.1229468126092 8.24386389202001 7.41293151225282 6.5428070252691 9.4608615347083 9.74587328168567 8.38956811069946 8.94934340809372 5.73652180234812 6.222231381162 7.19920704527587 6.4432549245487 4.99329867082135 8.4486689066167 7.84824897555037 6.19434122264265 9.02433529184528 0.246906932409562 0.237572392769675 0.25029407090915 0.239940428755188 0.246469330517218 0.249685341830070 0.250862082946358 0.251119196247770 0.254698063462248 0.240848653975144 0.241083530387436 0.242245841328327 0.240672970202263 0.246539560043751 0.245150348933774 0.242572767552534 0.253582916700501 0.237572392769675 0.237609486501957 3 3 - 17483577 17483951 17483794.909 17483327 17486243 - gene protein_coding_gene FALSE TRUE AT3G47420.1 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative similar to transporter, putative [Arabidopsis thaliana] (TAIR:AT4G25220.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); similar to Os04g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053515.1); similar to putative glycerol 3-phosphate permease [Zea mays] (GB:AAS82603.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -1.58125246904847 -9.50307528868685 8.87881008516022e-06 0.0618320334330558 9.94934522167917 15.7976113957070 -1.58125246904847 0.220281110848832
AT1G13250_at 4.73637618630224 4.87107521049711 2.45963093924249 2.66682966711648 3.38731675384411 3.64433269287982 5.40707811320244 5.88282122983245 5.72127965583009 5.16651255041887 6.06942508020562 7.31101715231437 5.46001992805654 5.71885996597808 6.57206302032588 5.2960269802717 4.42313122608472 6.01833779326347 5.72145476178334 0.233122166319358 0.230199399466067 0.239292617483241 0.236116360363277 0.229387408066524 0.226918101998135 0.227272084944935 0.233552448433683 0.224793286338437 0.239070094276434 0.228509662538832 0.235327507707852 0.226802855563257 0.234224715509212 0.230050299323344 0.226588652790747 0.226805803888362 0.228297450229043 0.230621184575459 1 1 - 4528963 4529478 4529203.091 4528620 4530060 - gene protein_coding_gene FALSE TRUE AT1G13250.1 GATL3 (Galacturonosyltransferase-like 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL4 (Galacturonosyltransferase-like 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G06260.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96888.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.93130784219303 -9.49551243706443 8.93377652312856e-06 0.0622058859305442 9.94549240176988 9.8294454987763 -0.93130784219303 0.102885887280131
AT1G14150_at 9.99359446840137 10.1042816841545 9.30598482893888 9.32070555459011 9.76658824061735 9.52556186580242 11.2116732243406 11.1356566680643 11.0629457049508 11.0176678107601 10.4499102995274 10.7587254679982 10.4592032739589 10.7364928049683 10.6154552114716 10.8691754875290 10.6149786840871 10.6703005897054 10.7513824679499 0.102396913209170 0.0988804380332242 0.107416940356565 0.109535125343324 0.102213562632485 0.108942188481650 0.101261170539660 0.098414664668204 0.102715851158446 0.100570236969856 0.100645923052764 0.098414664668204 0.0999501774604236 0.104268631947423 0.0995919864629148 0.098805445085991 0.105724227519190 0.0992935406620986 0.101098233273285 1 1 + 4839937 4840558 4840190.727 4839850 4840748 + gene protein_coding_gene FALSE TRUE AT1G14150.1|AT1G14150.2 oxygen evolving enhancer 3 (PsbQ) family protein similar to PSBQ/PSBQ-2 (photosystem II subunit Q-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G05180.1); similar to Putative oxygen evolving enhancer protein 3, identical [Solanum demissum] (GB:AAW28572.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797)|similar to oxygen evolving enhancer 3 (PsbQ) family protein [Arabidopsis thaliana] (TAIR:AT3G01440.1); similar to Putative oxygen evolving enhancer protein 3, identical [Solanum demissum] (GB:AAW28572.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) -0.714404911283748 -9.48998843311885 8.97416325418523e-06 0.0624781245756376 9.94267509166342 20.8408952611767 -0.714404911283748 0.0478146590284098
AT1G53645_at 6.6683527760379 6.6607651070186 5.56596842782329 5.61741448789677 4.60537613679154 4.45335820161730 5.58699178938368 6.02451392998854 4.08585649594349 4.05992600691522 3.45027318869275 3.89553807482924 3.71689534929491 3.33603121405097 3.74456344072310 3.58862944667994 3.72386122734432 3.70027247508793 4.23618047701686 0.221187738918472 0.214345009095615 0.214194624939307 0.215078439603558 0.210045867973546 0.220005858614841 0.216257597357627 0.213532822969247 0.219872435381742 0.216467262307346 0.211828390191408 0.214483912191220 0.212913684476546 0.216006245932576 0.221482699727397 0.210302453190167 0.225570553281013 0.217452193031074 0.214889251058858 1 1 - 20030127 20031247 20030619.818 20029815 20032303 - gene protein_coding_gene FALSE TRUE AT1G53645.1 hydroxyproline-rich glycoprotein family protein similar to actin binding [Arabidopsis thaliana] (TAIR:AT1G31810.1); similar to hydroxyproline-rich glycoprotein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45380.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.82871976413946 -9.45853376613395 9.20802769343924e-06 0.0640970807740305 9.92658181757233 9.53375712975958 -0.82871976413946 0.0806589476084426
AT2G41250_at 10.7907551446753 10.7214420813776 10.9572349439725 10.8624280323356 10.3863114674604 10.1144049100595 10.9599593332652 10.7269122876031 10.3393884338285 10.8349977059507 8.95590298044181 8.83998771420355 9.54789346330268 9.10811734783522 8.6399368212378 9.52032713213296 10.0015764624683 9.41115910681504 10.5367196390301 0.0800137713767546 0.0783570994695122 0.0814367694768534 0.0829618922608524 0.0799457070020322 0.0832242493563301 0.0834553314292183 0.0791436368477537 0.090852963571644 0.0796598582842975 0.0818030023022732 0.0810796913359278 0.0847398039828909 0.0877247162104527 0.0884299053652397 0.0804877532652977 0.083359488601596 0.0822862094114605 0.081242667078352 2 0|2 /|- 17208081 17208975 17208395.3 17207737 17209696 - gene protein_coding_gene FALSE TRUE AT2G41250.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G14310.1); similar to Haloacid dehalogenase/epoxide hydrolase [Medicago truncatula] (GB:ABE94184.1); contains InterPro domain HAD-superfamily subfamily IA hydrolase, REG-2-like; (InterPro:IPR011949); contains InterPro domain HAD-superfamily hydrolase, subfamily IA, variant 1; (InterPro:IPR006439); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) -0.768464168827526 -9.45625594109 9.2252239303539e-06 0.0642075585552631 9.92541302703702 20.6016716358392 -0.768464168827526 0.0652204326348974
AT2G31360_at 10.9796847340874 11.3010653323705 10.6422884014812 10.7421690931070 11.3707220573602 10.9562118500961 10.0695523671682 10.1338052302481 9.9481914023025 9.52206752258146 11.2646730569763 11.3155918667878 11.1687624719413 11.4002278345858 11.0009470752994 10.3308780912864 10.3150730084955 10.9801027003507 9.07614625920432 0.099644197941108 0.0934108637578452 0.0969132143469712 0.0972995396951305 0.099859869687933 0.0996583893883922 0.103555176313071 0.0959210209553026 0.095414119748411 0.097649412086128 0.0945313760947197 0.0934108637578452 0.0934108637578452 0.094832734706078 0.0979462462437364 0.0934108637578452 0.103035434930658 0.0934108637578452 0.106169054132338 2 2 - 13379215 13380115 13379733.636 13378735 13380683 - gene protein_coding_gene FALSE TRUE AT2G31360.1 ADS2 (16:0DELTA9 ARABIDOPSIS DESATURASE 2); oxidoreductase homologous to delta 9 acyl-lipid desaturases of cyanobacteria and acyl-CoA desaturases of yeast and mammals. expression up-regulated by cold temperature. Identical to Delta-9 acyl-lipid desaturase 2 (EC 1.14.19.-) (ADS2) [Arabidopsis Thaliana] (GB:Q9SID2;GB:O65798;GB:Q8LD80); similar to ADS1 (DELTA 9 DESATURASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G06080.1); similar to Delta-9 desaturase [Rosa hybrid cultivar] (GB:BAA23134.1); similar to desaturase delta 9 [Picea glauca] (GB:AAM12238.1); similar to delta 9 acyl-lipid desaturase/delta 9 acyl-CoA desaturase homolog [Rosa hybrid cultivar] (GB:AAB50679.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Acyl-CoA desaturase; (InterPro:IPR012196) 0.881692276530969 9.45109277813182 9.26433480071205e-06 0.0644705058781552 9.92276202754045 21.0181875871956 0.881692276530969 0.0930655712822077
AT3G22160_at 5.8329189579861 6.03915800408617 7.51272395302061 7.74939829750882 5.22223487867541 6.289125288519 3.40602503407345 3.62792927627227 3.72079777457196 3.28383811289953 3.85503686232679 3.47583539512572 4.11620538110935 4.19416627712344 3.99980270004857 4.20050094011923 6.04100766747772 4.04040033257886 3.03273006126251 0.3143100645553 0.315445240852744 0.33846019264377 0.339645909721179 0.321530918266701 0.320720002879566 0.312684938683578 0.312684938683578 0.319601204141762 0.315299013745803 0.312684938683578 0.315645747273693 0.312684938683578 0.312684938683578 0.318551301473435 0.312684938683578 0.312684938683578 0.313017063852789 0.316066127966417 3 3 - 7818221 7818703 7818452 7817864 7818992 - gene protein_coding_gene FALSE TRUE AT3G22160.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT4G15120.1); similar to Os02g0173200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046037.1); similar to VQ [Medicago truncatula] (GB:ABE94086.1); similar to Os06g0666400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058308.1); contains InterPro domain VQ; (InterPro:IPR008889) 1.43072179061859 9.45033059669175 9.27012387481708e-06 0.0645015219209772 9.92237049024055 9.50301825830108 1.43072179061859 0.196250850457076
AT3G14840_at 9.94090886854112 10.0218679444250 9.88164561842482 9.7724089933023 9.66915968800606 9.4416408487469 8.16987981132898 8.0870222114819 8.79308033700502 8.48747649573105 9.38055772553122 9.72200757798344 8.78225464409496 9.563276793728 9.44841987686364 9.26973388686774 9.02916243117152 9.67920179056325 8.43466406089824 0.109839775020943 0.109674132343348 0.111972606255466 0.110353683529058 0.109542434062932 0.106257197787328 0.116422994391891 0.117209946212954 0.111738639988359 0.115290430538844 0.106257197787328 0.107089986957471 0.108990603358503 0.110946167214900 0.10714366889934 0.107671868079261 0.116324825056637 0.109559723780116 0.108331941981802 3 3|0 +|/ 4993135 4993866 4993550.7 4988114 4994065 + gene protein_coding_gene FALSE TRUE AT3G14840.1|AT3G14840.2 leucine-rich repeat family protein / protein kinase family protein similar to serine/threonine protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G53420.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1)|similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53440.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07650.1); similar to serine/threonine protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G53420.1); similar to H0818E11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86064.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.711940310574073 9.44802057269758 9.28769395757022e-06 0.064614486862816 9.92118350356253 18.3386003173964 0.711940310574073 0.0480572571783785
AT1G74070_at 5.96453566192687 5.96043196653591 4.88980238440887 4.45081198215172 5.55196624485951 5.64337177546494 7.42384690631592 7.18559577219477 7.47111593631849 7.50102677508658 7.0220744760897 7.77755672043557 6.70382010321122 7.42100609635824 8.0713331701586 7.34334962139572 6.44561794398614 6.899125163522 7.31055429153014 0.211282395202732 0.199841418312324 0.211177951106019 0.209982942487803 0.200212204156860 0.201214970569435 0.202218903056133 0.196079504396267 0.207514742782159 0.197075847093473 0.197980872900592 0.199401611963501 0.199903758201880 0.198721809014553 0.194703467460988 0.194716883429333 0.198216231633496 0.195770305480067 0.200882371491517 1 1|0 -|/ 27855612 27855985 27855833.2 27855149 27856637 - gene protein_coding_gene FALSE TRUE AT1G74070.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G35100.1); similar to Os01g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041801.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44942.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.858347367886266 -9.44680349690413 9.29696591180296e-06 0.0646696948825014 9.92055792980069 13.2028208765022 -0.858347367886266 0.0878749682393524
AT2G02760_at 11.3830774242327 11.5759777995592 11.8861058505963 11.8813062716989 12.0334528948723 12.0003192396267 10.7873702177176 11.0261854687481 10.5513687702710 10.7566646180862 11.6261514224014 11.1068094872257 11.6140871840233 11.4621558384095 10.9889541149156 11.3898032932396 11.5436338457641 11.4910000942362 10.8054057140433 0.097549914837861 0.0947429612028444 0.0987181575666515 0.0972326933635866 0.0947429612028444 0.0990547699052712 0.0983010993773792 0.096043401293263 0.111320669101614 0.0986569747114808 0.100360915515243 0.0972681845134281 0.0967321492832833 0.106986026380058 0.0975835493924267 0.095068128771321 0.0998287521672403 0.102471477917904 0.0947429612028444 2 2|0 +|/ 774320 775124 774774.444 773683 775370 + gene protein_coding_gene FALSE TRUE AT2G02760.1 ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2); ubiquitin-protein ligase ubiquitin conjugating enzyme UBC2. Homolog of the yeast RAD6 gene. Identical to Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 2) (Ubiquitin carrier protein 2) (UBC2) [Arabidopsis Thaliana] (GB:P42745); Identical to Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC 6.3.2.19) (Ubiquitin- protein ligase 1) (Ubiquitin carrier protein 1) (UBC1) [Arabidopsis Thaliana] (GB:P25865); similar to UBC1 (UBIQUITIN CARRIER PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G14400.2); similar to ubiquitin carrier-like protein [Solanum tuberosum] (GB:ABC01903.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.727744022930485 9.44375898388304 9.3202046842374e-06 0.0648220235788712 9.91899248524507 22.625376451295 0.727744022930485 0.0534411614467749
AT3G24190_at 9.0207441614376 8.97966645737269 9.20297796616386 9.13710473180678 8.76787428744714 8.7881804593876 10.5902000787663 10.5233632250128 9.86840249890538 10.3803993600939 9.7581429028545 9.46610981923308 9.63064508953772 9.70860836387154 9.33686887046498 9.9855572872948 9.7586567238683 9.61014576889717 10.2047122955065 0.107531813819784 0.107393092865645 0.108788042556945 0.108908950417992 0.114018374026422 0.117780950784925 0.106416383545909 0.109807005015950 0.110923299164520 0.101969165845300 0.108064565923937 0.107588557698318 0.109403904735581 0.109542179196119 0.109163205789873 0.106133483277046 0.105849172659914 0.111357381518540 0.102834191241206 3 3 + 8746955 8747629 8747342.091 8743262 8747908 + gene protein_coding_gene FALSE TRUE AT3G24190.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to ABC1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22014.1); similar to Predicted unusual protein kinase (ISS) [Ostreococcus tauri] (GB:CAL54263.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.649394325514267 -9.43849388276908 9.3605454162786e-06 0.0650932328248014 9.91628331349648 19.2802705399684 -0.649394325514267 0.0180725472176145
AT1G19510_at 6.83492717206029 7.35361670231161 5.13061725016819 5.68296934216138 5.69667181961052 5.7021171344046 6.13611709699709 6.84393413534228 5.05318069250093 5.20775711294152 3.05072059967355 3.27796642565232 4.72408559421587 4.29549825555177 2.58089120628976 5.12705566844868 4.41053502639988 2.77422917478281 5.35165056255935 0.310190439889066 0.317740354972055 0.3118480410197 0.311958264591196 0.310449781507892 0.31223089620003 0.315250874920327 0.312401100910512 0.319764013307781 0.310190439889066 0.318354676568916 0.325011012469684 0.310190439889066 0.313378502934111 0.334244514327731 0.310190439889066 0.316538544866199 0.337524390452862 0.310823191048053 1 1 - 6757045 6757257 6757145.091 6756277 6757368 - gene protein_coding_gene FALSE TRUE AT1G19510.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G75250.2); similar to myb-like protein RL3 [Antirrhinum majus] (GB:ABI14752.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -1.33156413444104 -9.43624723736863 9.3778179296134e-06 0.065203968064602 9.9151265500419 10.6647807649040 -1.33156413444104 0.179440770069075
AT2G45910_at 6.41528326003602 6.54791337817599 6.68829215721923 6.89104982743546 6.6476919031326 6.42697712944801 4.94084240301506 4.89235123526104 3.92632522361158 3.91031943040660 4.15168917475135 4.35059759159567 4.89444340231688 4.42463941873574 4.1999589946135 5.14193450504265 4.74974892925524 4.3451672412898 4.21664549828464 0.214411021350013 0.207985880755620 0.218541859605021 0.207752625288607 0.209312597383302 0.211692402810164 0.210694195232354 0.210566987535436 0.222952352172027 0.216311799367570 0.207322469134013 0.206990606883111 0.211680189969368 0.210817338418754 0.218298653972331 0.206990606883111 0.221375815874759 0.213716474689136 0.208625709536022 2 2 + 18904537 18905228 18904834.182 18901147 18905601 + gene protein_coding_gene FALSE TRUE AT2G45910.1 protein kinase family protein / U-box domain-containing protein similar to protein kinase family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49060.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain U box; (InterPro:IPR003613) 0.739457104142978 9.43396819579518 9.3953756353603e-06 0.0653166514170248 9.9139526500075 10.4563180573659 0.739457104142978 0.0573351349349278
AT2G26580_at 6.39137020265265 6.50951277494436 6.30530475174941 6.64012225028863 8.10500888901056 7.69345199013419 6.35193860417078 6.48653926232381 5.92297648985688 5.63391452985194 6.86835779416223 7.47046277199331 6.87431005274262 6.64887074481093 6.87683114887631 6.42241414355096 6.56463406765863 6.30918404375767 5.57512222013558 0.203308839237783 0.205271767766012 0.206378808039906 0.201475076167905 0.220987184572707 0.208459499196841 0.209353976764188 0.207049261682038 0.223234088668322 0.204664073498773 0.205095329241779 0.207070109446375 0.201475076167905 0.210008501664789 0.205596386614179 0.203537009139087 0.211859227364543 0.205898788891371 0.211645096144181 2 0|2 /|- 11311813 11312038 11311932.25 11310668 11314031 - gene protein_coding_gene FALSE TRUE AT2G26580.1|AT2G26580.2 plant-specific transcription factor YABBY family protein Identical to Axial regulator YABBY5 (YAB5) [Arabidopsis Thaliana] (GB:Q8GW46;GB:O48725); similar to YAB2 (YABBY 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G08465.1); similar to YABBY-like transcription factor PROLONGATA [Antirrhinum majus] (GB:AAS10178.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.897421887634372 9.43334497096297 9.40018329729227e-06 0.0653406740994786 9.91363155622717 13.0429331786054 0.897421887634372 0.0969039431681906
AT3G23805_at 4.91438117947249 5.05232201068278 3.55043905576895 3.97780335419874 3.39319292438337 3.65953693722163 6.37982040141409 7.25320990042604 7.37938444277683 6.64771980445367 7.71291225665607 7.36299483830896 7.14321780563331 7.29273793845678 6.72716320611142 6.17790408140706 4.81895936222066 6.53037094650476 7.23676465556476 0.228083824540396 0.223848516728607 0.226887036936409 0.226601434690816 0.229751332367879 0.230218940642252 0.228182700092383 0.230203097838067 0.222998536982446 0.228757059356575 0.223523247285752 0.222998536982446 0.222998536982446 0.226155216070005 0.234780938110574 0.222998536982446 0.244174436880064 0.222998536982446 0.228325283895158 3 3 + 8586491 8586805 8586647.545 8586389 8587063 + gene protein_coding_gene FALSE TRUE AT3G23805.1 RALFL24 (RALF-LIKE 24) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL31 (RALF-LIKE 31) [Arabidopsis thaliana] (TAIR:AT4G13950.1); similar to rapid alkalinization factor 1 [Solanum chacoense] (GB:AAR00325.2); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -1.31093202581252 -9.4251752998345 9.46345849337304e-06 0.0657710365289426 9.90941925103613 11.6769576481181 -1.31093202581252 0.176092475900706
AT4G10030_at 5.24967675300282 5.31459109299279 3.80496237250008 4.08056811603407 5.03600161779044 4.83251182297613 6.7954839894419 6.26829959489325 6.58349377167891 6.66892493127476 6.65348090754699 6.84977847390229 5.4978917335481 6.75876087301429 6.00124562677464 6.00623752747972 5.1549689386805 6.46319682400688 6.59285558583743 0.221129575625728 0.221005486552683 0.240695578447793 0.224189996005398 0.223444376791569 0.235963831046113 0.228903218279593 0.219563222303204 0.238724962425980 0.223552503221891 0.233466182648697 0.232352068950532 0.219219259614216 0.226988461947350 0.219450577868032 0.222367963627196 0.244681751263650 0.223503820823799 0.224492940681637 4 4|0 -|/ 6270487 6271594 6270828.222 6270238 6273241 - gene protein_coding_gene FALSE TRUE AT4G10030.1 hydrolase, alpha/beta fold family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52570.1); similar to Os01g0885600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045025.1); similar to Predicted alpha/beta hydrolase (ISS) [Ostreococcus tauri] (GB:CAL55286.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.955199095867682 -9.42280897509808 9.48187411908567e-06 0.0658895432535263 9.9081980625177 11.5669051913120 -0.955199095867682 0.109381483359346
AT4G05060_at 5.67309554479739 5.87738879301367 5.79973992389983 5.60919115882464 6.23283704091117 6.23385713955746 4.90587766363118 4.8994304850325 4.97620990730169 5.16242646242359 6.24064761839305 5.59472478976336 5.56511850162109 5.99973305596701 5.64622644187003 6.03014546843929 5.84330573637662 5.49596352813072 4.89624725823329 0.235187787236010 0.230288580565932 0.245474520134173 0.242763173624944 0.231048695846832 0.240457783314518 0.235670154127551 0.230325477613566 0.241976438121954 0.228806507803758 0.228648891313304 0.226242033027129 0.238583021009724 0.237162564369518 0.227996667228543 0.238687223235363 0.248657424809347 0.232984655833563 0.230242824508256 4 4|0 -|/ 2590500 2591705 2591224.5 2590063 2592161 - gene protein_coding_gene FALSE TRUE AT4G05060.1 vesicle-associated membrane family protein / VAMP family protein similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G21450.1); similar to Major sperm protein [Medicago truncatula] (GB:ABD32337.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.71015673038177 9.4128916737178 9.55948780781603e-06 0.0664193212887058 9.9030746377983 11.0607327279867 0.71015673038177 0.0483585365313161
AT2G06925_at 6.98024210795568 7.62079418590883 5.08583690840873 5.34788276819966 7.03204318804737 6.27733756353081 2.56806624004411 3.15307054644018 6.12863499696295 5.02305121408266 8.46849287474434 8.83479304959412 6.89172001533943 7.93033026570614 8.72181707251173 6.4883610496255 4.94882242150341 7.5045220821673 5.01130135022123 0.245817756633497 0.246020976418909 0.248893669028322 0.255897850404687 0.243071248987845 0.259122796345792 0.264983700332277 0.257447887293426 0.251219838387581 0.255179853464963 0.243071248987845 0.250494739355618 0.243071248987845 0.260854351620967 0.243071248987845 0.243071248987845 0.261929117434865 0.243071248987845 0.251521016641349 2 2|0 -|/ 2842479 2843133 2842739.556 2842350 2843298 - gene protein_coding_gene FALSE TRUE AT2G06925.1 ATSPLA2-ALPHA/PLA2-ALPHA (PHOSPHOLIPASE A2-ALPHA); phospholipase A2 Encodes a secretory phospholipase A2 enzyme, which specifically hydrolyzes the sn-2 position of phospholipids. The enzyme has a preference towards linoleoyl acyl chain over palmitoyl acyl chain. It also has a slight preference for phosphatidylcholine over phosphatidylethanolamine. similar to phospholipase A2, putative [Arabidopsis thaliana] (TAIR:AT4G29470.1); similar to putative phospholipase A2 [Dianthus caryophyllus] (GB:AAC69277.2); contains InterPro domain Phospholipase A2; (InterPro:IPR001211) 1.47058833521808 9.41179479738452 9.56811524674718e-06 0.0664696966191527 9.90250743866704 11.9387941257276 1.47058833521808 0.204086088969032
AT3G03920_at 7.38949818484754 7.91106773621692 6.24665945334598 6.91712218865396 6.40462610151714 6.18843030764205 6.92263645935708 7.51439094011905 7.34800173050568 6.25184260001476 4.7165712799394 5.34549660929459 4.76292268419195 5.12338787541937 5.50986346196843 4.98683256125403 5.0543480999734 4.46627190629774 6.4901585266477 0.228914804303271 0.232312534043581 0.238026257942527 0.234830171073163 0.227996699261257 0.236842284484327 0.239791478613986 0.226552808255849 0.235657818988142 0.221849621590120 0.223716721082384 0.221660966332429 0.230016355347984 0.225200812931745 0.236291269308237 0.228044445107660 0.238625009558032 0.235943929873409 0.230267128312257 3 3|0 -|/ 1009148 1010216 1009573 1009002 1010487 - gene protein_coding_gene FALSE TRUE AT3G03920.1 Gar1 RNA-binding region family protein Identical to Putative H/ACA ribonucleoprotein complex subunit 1-like protein 1 [Arabidopsis Thaliana] (GB:Q8VZT0;GB:Q8LG22;GB:Q9S715); similar to Gar1 RNA-binding region family protein [Arabidopsis thaliana] (TAIR:AT5G18180.1); similar to Os11g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068150.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_796892.2); contains InterPro domain Gar1 protein RNA-binding region; (InterPro:IPR007504) -1.34807231330453 -9.40844503278398 9.5945161934496e-06 0.0666435094797009 9.90077459984099 12.7829936358867 -1.34807231330453 0.183018628279378
AT3G02110_at 5.4868964864756 5.26390464049294 2.29844666687147 2.93572477967089 2.91675267436979 3.50996445969692 5.67626075034245 5.82686216100724 6.38969258840327 6.14461636472762 6.84590299749367 7.78867305723477 6.56670952907038 6.78490548685914 7.6816706859141 6.87910994464195 5.03208436427593 6.33326112751661 6.9704063742832 0.281786998128456 0.280725254704713 0.324185159031093 0.309208019588655 0.305312380989196 0.311732794628652 0.28674962041436 0.28346191487879 0.294293916897186 0.280725254704713 0.287407149651260 0.290916022217822 0.286928184284257 0.281400054373652 0.282776208175806 0.281242596230918 0.291745689268504 0.283966130809683 0.280725254704713 3 3 - 370912 371873 371406 370769 373729 - gene protein_coding_gene FALSE TRUE AT3G02110.1 SCPL25 (serine carboxypeptidase-like 25); serine carboxypeptidase similar to BRS1 (BRI1 SUPPRESSOR 1) [Arabidopsis thaliana] (TAIR:AT4G30610.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os02g0794500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048377.1); similar to Os01g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042076.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -1.20539549555308 -9.4062468548064 9.61188488773968e-06 0.066754540545352 9.89963693631197 10.8596572898312 -1.20539549555308 0.157701114000534
AT3G11964_at 6.16054904019676 6.04295178646054 5.84414244952903 5.92607445006752 5.28859232549405 5.31992339205843 6.18084644751527 6.01036407023341 4.8543215386767 5.584650745812 4.22807528229445 4.35092768955778 4.33018525539091 4.27382691532546 4.87141942496387 4.60731653571892 5.34860100654916 4.3635236610608 5.79189214654218 0.188665416531235 0.186454637093275 0.185858717271191 0.190011571049991 0.190440068101703 0.196213363136508 0.189862416428327 0.199065571399085 0.188734097268388 0.188308385934395 0.185858717271191 0.188742773359294 0.194216897005253 0.190373898627932 0.189458707569565 0.188730479381356 0.196132840499563 0.187955990367992 0.189675632548236 3 3 - 3793963 3794759 3794398.545 3793963 3806632 - gene protein_coding_gene FALSE TRUE AT3G11964.1 S1 RNA-binding domain-containing protein similar to crooked neck protein, putative / cell cycle protein, putative [Arabidopsis thaliana] (TAIR:AT5G41770.1); similar to PREDICTED: similar to KIAA0185 [Gallus gallus] (GB:XP_421739.2); similar to putative pre-rRNA processing protein RRP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC79783.2); similar to rRNA processing protein Rrp5 (ISS) [Ostreococcus tauri] (GB:CAL55958.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Suppressor of forked; (InterPro:IPR008847); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.683774177066763 -9.39256839658703 9.7207507199391e-06 0.0675008929992571 9.89254800136355 10.8251918027117 -0.683774177066763 0.0389230076087774
AT4G23470_at 9.56514789185825 9.545091321555 9.83775626604296 9.7156753635008 9.15627676580766 8.93881734745435 6.95407197193956 6.9431707370781 8.90831998322828 7.35262288180542 8.3053205262913 8.72244522232157 7.98290730475022 8.05253898340008 8.40081618179111 8.26889993471126 7.71883253550646 7.99417101932365 7.59423138053534 0.20497676036412 0.206479563672411 0.208932572119739 0.205888271847942 0.199501811596528 0.204198736698406 0.202462126113673 0.196859121238861 0.205527312507364 0.206091385980773 0.213516582492100 0.200894483719432 0.197635822718411 0.21315301429811 0.209338616145455 0.196624726472709 0.212491697406798 0.205879030861305 0.201257389952626 4 4 + 12250838 12250986 12250900.364 12249059 12251406 + gene protein_coding_gene FALSE TRUE AT4G23470.1|AT4G23470.2|AT4G23470.3 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G63830.1); similar to Os10g0535800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065166.1); similar to Os03g0123600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048806.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN74842.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.694638835041333 9.3898383172085 9.74264252691682e-06 0.0676431670643835 9.89113112574168 16.8982340641721 0.694638835041333 0.0433374794428936
AT3G15850_at 10.6633187162907 10.8710298682002 10.2293417566232 10.2422563545120 10.3151917362583 10.3622359905150 11.7585405626882 11.8230674430895 11.4189100676262 11.8485204426368 11.4721132196758 11.5674533154326 11.3557790806450 11.2472886244327 11.4462536773082 11.3583182498750 10.8383104916814 11.1143983627364 11.7534451020541 0.109836876649013 0.106349689459747 0.111201907514815 0.116940655136915 0.111295522775990 0.115330688439820 0.11011661840862 0.120466857374076 0.130760351934686 0.110070718820869 0.108735177219137 0.106349689459747 0.106349689459747 0.117682464049941 0.109668989459263 0.108086773055710 0.118702237300829 0.114865946976529 0.106349689459747 3 3|0 +|/ 5359772 5360981 5360499.1 5359016 5361192 + gene protein_coding_gene FALSE TRUE AT3G15850.1 FAD5 (FATTY ACID DESATURASE 5); oxidoreductase Chloroplastic enzyme responsible for the synthesis of 16:1 fatty acids from galactolipids and sulpholipids. Uses ferredoxin as electron donor. Identical to Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplast precursor (EC 1.14.19.-) (Monogalactosyldiacylglycerol-specific palmitic acid desaturase) (Delta 7 desaturase) (FAD5) (ADS3) [Arabidopsis Thaliana] (GB:Q949X0;GB:Q8LCQ8;GB:Q9LVZ4); similar to ADS1 (DELTA 9 DESATURASE 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G06080.1); similar to desaturase delta 9 [Picea glauca] (GB:AAM12238.1); contains InterPro domain Fatty acid desaturase, type 1; (InterPro:IPR001522); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804) -0.682684257236199 -9.38897695951002 9.7495608762655e-06 0.067681451603035 9.89068395424437 22.2699300944367 -0.682684257236199 0.0385751188368877
AT1G13880_at 6.47857805653863 6.65196122121737 7.27855164500519 7.48707719832712 8.14044457436427 7.58949681657407 6.6328604488109 6.55388102893089 5.96640886026555 6.16783657330863 7.64284266293362 7.05593527216499 7.23874000880313 7.2856304105651 6.68086265861176 7.02691952407601 7.07648281741126 6.40946333189157 6.51447591913481 0.187173634067960 0.187179451539237 0.196556749347091 0.193151918580832 0.190202818993326 0.214266551718622 0.189989787690905 0.191335876868157 0.206094815871742 0.193266027894631 0.191063820002025 0.188736360726268 0.195472252717149 0.197571454465131 0.190349036587542 0.190750315335777 0.196675969978585 0.192204377245775 0.189039938495783 1 1 + 4750436 4750930 4750721.636 4748870 4751209 + gene protein_coding_gene FALSE TRUE AT1G13880.1 ELM2 domain-containing protein similar to myb family transcription factor / ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03470.2); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1); contains InterPro domain ELM2; (InterPro:IPR000949) 0.94022075229870 9.38096731756306 9.81415515361439e-06 0.0681200509212375 9.8865225966998 13.7357813920761 0.94022075229870 0.107143872325733
AT4G04630_at 5.09908563722704 5.86027292934267 6.44714623349854 6.55692252013547 7.35366242048619 7.60101965851058 6.15822835413147 6.2152554124277 5.75743821294942 5.55316774263113 7.42150885862145 6.70438509184174 7.10020651533724 6.90235142661128 5.81620769813412 7.36409315423809 7.58198293946409 6.54598132162068 6.3048472520964 0.225251257610509 0.218514952592543 0.221779132917708 0.222539312939720 0.216469326645896 0.234711042320229 0.226300704918387 0.234954425247518 0.228692438672843 0.228666812973977 0.226499056964333 0.219942426099625 0.234139397418393 0.223689183233936 0.224809619297519 0.216219190930777 0.234022551295916 0.219935367050955 0.227527281447841 4 4 - 2332172 2332619 2332416.091 2331675 2332798 - gene protein_coding_gene FALSE TRUE AT4G04630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21970.1); similar to Protein of unknown function, DUF584 [Medicago truncatula] (GB:ABE91657.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 1.10712450735837 9.37946085033095 9.82635710718276e-06 0.0681949183238484 9.8857392806423 12.8121528265329 1.10712450735837 0.140152335988843
AT2G19350_at 6.65368059435269 6.90659196457278 7.06265363057862 7.09543860408004 7.99030886910272 7.78112937844819 5.95609330346937 6.18392769392818 5.64525623327245 5.10168088676401 6.1996293392038 5.59624390626039 6.07833014941108 6.15840544456513 5.70087163725251 5.93709922803012 5.81598647343423 5.67178349188556 5.4471988287658 0.251537645385231 0.244097803651549 0.244063087097007 0.241836938766005 0.242650794585741 0.25385278236571 0.247444287152305 0.244285707091782 0.251965050340503 0.243515912842837 0.246875983164113 0.246696203010171 0.241836938766005 0.251299776599563 0.246586619548286 0.241836938766005 0.255570040392194 0.241836938766005 0.246621092257844 2 2|0 +|/ 8383426 8384155 8383682.5 8383284 8384425 + gene protein_coding_gene FALSE TRUE AT2G19350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29850.1); similar to unknown [Gymnadenia conopsea] (GB:ABD66514.1); contains InterPro domain Protein of unknown function DUF872, eukaryotic; (InterPro:IPR008590) 0.777028811979788 9.37455484447308 9.86621111254176e-06 0.0684616389099273 9.88318690285204 12.6001475173280 0.777028811979788 0.0693738967872802
AT1G78600_at 9.9764546725303 10.2880251655490 10.5335643352307 10.5557053584891 11.0647906709277 10.4082452052966 9.89162729799572 9.49044959199816 8.05971552766082 8.65465950776544 10.1366234982437 9.81473664842244 10.2558268126058 10.3536481830599 9.222564048735 9.67917944236186 10.2601419874803 9.98041651619288 8.62282138691925 0.102185309651799 0.101687822677695 0.104787190656560 0.101687822677695 0.101687822677695 0.103096032380611 0.103613819248147 0.105524253734533 0.133864170082926 0.108774602588316 0.105706008450717 0.101687822677695 0.101687822677695 0.101687822677695 0.111593647139083 0.102575461623479 0.110821593995292 0.107448492835642 0.120197385376127 1 1 + 29572783 29573501 29573132.273 29572080 29573752 + gene protein_coding_gene FALSE TRUE AT1G78600.1 zinc finger (B-box type) family protein Identical to Putative salt tolerance-like protein At1g78600 [Arabidopsis Thaliana] (GB:Q9SYM2;GB:Q8RWG4); similar to STO (SALT TOLERANCE), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G06040.1); similar to CONSTANS interacting protein 1 [Lycopersicon esculentum] (GB:AAS67368.1); similar to Os01g0202500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042327.1); similar to Os06g0152200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056834.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 1.12304860591182 9.35453965006776 1.00306725714257e-05 0.0695928063005516 9.8727515282406 19.4804199287120 1.12304860591182 0.143704357051844
AT4G00660_at 6.92883679649413 7.09990365173942 6.8015052115224 7.02843775612726 7.36750957106679 7.20982108508573 6.30181265209293 6.42132897299032 5.06617680037334 5.15536026760076 6.4374447057302 6.6437966336215 6.17466600468296 6.58453612690418 6.42403380590864 6.63280979553117 6.3164921364226 5.89370646448441 5.74704514139214 0.167213075009342 0.165231933423096 0.167128701093151 0.166450387353578 0.166436402718543 0.163689995482191 0.167751113389954 0.171870288138794 0.185696543328416 0.165237443307228 0.165778689649526 0.170647639439584 0.167399955175617 0.16396308034036 0.169048251886672 0.165274705188558 0.174714671625152 0.167109550551920 0.167532256527666 4 4|0 +|/ 276423 277394 276779.778 274257 278737 + gene protein_coding_gene FALSE TRUE AT4G00660.1|AT4G00660.2 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 8 (EC 3.6.1.-) (RH8) [Arabidopsis Thaliana] (GB:Q8RXK6;GB:O65275;GB:Q9ZS12); similar to DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana] (TAIR:AT3G61240.2); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT2G45810.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84720.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84723.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84719.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.739711430163319 9.32802032803277 1.02532786989782e-05 0.0711269943348118 9.85886958848208 12.7505426849479 0.739711430163319 0.0599259236923466
AT4G18270_at 5.75180046258176 5.71149987658422 6.54954995900146 6.24718548319128 7.06184522825933 6.47442902227343 7.00911353235102 6.74626110895742 4.69429215035336 5.56727921789468 7.23631807944696 7.58678837357226 7.57812617263198 7.76681978226264 6.75538699825971 6.41488310930798 6.52167996679582 6.55951404883551 5.65546851187948 0.22765121722824 0.227294651925462 0.227809866709797 0.225283410322836 0.224006803192701 0.234108385332239 0.227852576495425 0.226431495778303 0.253998914094496 0.226154262269994 0.227920059073753 0.225936331506823 0.224006803192701 0.242619067689524 0.226925273542853 0.230044392769064 0.239622664735893 0.226773116229435 0.231117013744046 4 4 - 10099412 10100755 10099924.727 10099375 10101908 - gene protein_coding_gene FALSE TRUE AT4G18270.1 ATTRANS11 (Arabidopsis thaliana translocase 11); catalytic Encodes protein similar to similar to bacterial translocase I (mra Y). Expressed during flower bud development. similar to Phospho-N-acetylmuramoyl-pentapeptide-transferase homolog (Translocase I) (GB:O49730); contains InterPro domain Glycosyl transferase, family 4; (InterPro:IPR000715) 1.01267164220469 9.31765480442747 1.03417726328396e-05 0.0717305349813755 9.85342634313233 12.6230203473658 1.01267164220469 0.123245737159297
AT3G02250_at 5.75160458994273 5.85150889194903 4.5218188920004 4.0303909962464 5.02422565360138 5.22061776905955 7.6431589523339 7.34387236242079 6.44793138972741 6.59226800448167 7.36511045678493 7.6303263782973 6.18946286228425 7.03022430441542 6.67884439315576 6.12942068739546 4.81422889227126 6.50398567769463 6.3289694041259 0.225094449257375 0.225940825963174 0.233405994695124 0.232516706457454 0.234541743490153 0.232831385954112 0.228506957417228 0.235145454155684 0.240229549330878 0.223628775773242 0.221456061793254 0.221456061793254 0.236428502627557 0.221456061793254 0.233950224163679 0.222918424641210 0.236568799081542 0.223625011345797 0.227061487439287 3 3|0 -|/ 424248 424894 424618.4 423808 427068 - gene protein_coding_gene FALSE TRUE AT3G02250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15740.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96934.1); similar to Os06g0284200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057398.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96844.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.93098100717115 -9.31328123303249 1.0379365062286e-05 0.0719808967069534 9.8511267333358 12.1729447914355 -0.93098100717115 0.106625349016452
AT1G23020_at 7.14819945660995 7.63042535074082 8.3955549927138 8.25338751287392 9.82933069598336 9.2993190919279 5.9237607955675 5.26120463117294 8.31977597117951 8.47055075445586 8.13854327172455 8.64323784474967 9.36474127457444 8.98545957562716 7.86838645011936 9.66908654591332 9.2394078895675 6.12237374882988 8.49443042116607 0.203203929119269 0.190223303212883 0.206109126346665 0.195215164922385 0.202592052386947 0.217291532022344 0.204486523276477 0.22736242936381 0.206611971883012 0.194586956207882 0.193520487776352 0.193349540693522 0.202144531114397 0.194079076554253 0.190134320665463 0.193529685399069 0.216977820421073 0.207599035430573 0.188032401915593 1 1 - 8150198 8150835 8150530.545 8150075 8153346 - gene protein_coding_gene FALSE TRUE AT1G23020.1 ATFRO3/FRO3 (FERRIC REDUCTION OXIDASE 3); ferric-chelate reductase Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon. similar to FRO1 (FERRIC REDUCTION OXIDASE 1), ferric-chelate reductase [Arabidopsis thaliana] (TAIR:AT1G01590.1); similar to FRO2 (FERRIC REDUCTION OXIDASE 2), ferric-chelate reductase [Arabidopsis thaliana] (TAIR:AT1G01580.1); similar to ferric-chelate reductase [Lycopersicon esculentum] (GB:AAP46144.1); similar to iron reductase [Pisum sativum] (GB:AAU94355.1); similar to ferric-chelate reductase [Pisum sativum] (GB:AAK95654.2); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916) 1.26457635386152 9.30985603429142 1.04089116964217e-05 0.0721753937029877 9.84932456459918 16.1837262946515 1.26457635386152 0.170671417160862
AT1G11720_at 6.9139330977423 7.18129044909255 6.566008742716 6.58273262165197 7.05324573430482 6.82027444044038 8.92001665893466 8.6265891332597 7.49020069158834 8.2493156903174 7.11063392750522 7.501240685012 7.09366852118511 7.48958913244062 7.15735739186411 7.78616684656145 7.52278686592329 7.28656952695126 7.76641677226222 0.215316978664245 0.205436232733717 0.214606367319867 0.210248409792013 0.210612488236746 0.214726542020284 0.214373146438845 0.20927165173632 0.234986216311069 0.216872633144479 0.211418346527155 0.203085328971107 0.211625330751282 0.206198192046735 0.219386631508044 0.203085328971107 0.232883682719961 0.220412154309599 0.20912929118069 1 1|0 +|/ 3956137 3956808 3956485.4 3952511 3957044 + gene protein_coding_gene FALSE TRUE AT1G11720.1 ATSS3 (STARCH SYNTHASE 3); starch synthase/ transferase, transferring glycosyl groups Encodes a starch synthase that in addition to its role in starch biosynthesis also has a negative regulatory function in the biosynthesis of transient starch. The protein apparently contains a starch-binding domain (SBD). similar to starch synthase-related protein [Arabidopsis thaliana] (TAIR:AT4G18240.1); similar to Soluble starch synthase 3, chloroplast precursor (SS III) (Soluble starch synthase III) (GB:Q43846); similar to Starch synthase isoform SS III [Vigna unguiculata] (GB:CAB40374.1); similar to soluble-starch-synthase [Solanum tuberosum] (GB:CAA64173.1); contains InterPro domain Starch synthase III; (InterPro:IPR009756); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835) -0.81085069459397 -9.29878309599863 1.05050696321416e-05 0.0728316477596378 9.84349125452983 14.9349176915526 -0.81085069459397 0.0797057127457994
AT2G05940_at 8.75946174514208 8.77197937144724 9.45149035465448 9.49680763542243 9.0571285368238 8.94582557801025 8.41055468456357 8.31290340175382 7.64426474900906 7.25010804116511 7.94576550700427 7.90704089173509 7.9057888236118 8.24290013449655 7.89561676031138 8.09327868054094 8.09645934118878 7.8075705071138 7.18258883186105 0.135486322406513 0.132711249050863 0.133970819246641 0.129737996786872 0.129229796650415 0.130314293020949 0.132376732929676 0.134691114813635 0.145781670426475 0.140943618760173 0.138391354675744 0.129642535225759 0.131990743548293 0.132567144538459 0.138623999662480 0.131369291521162 0.130992145144329 0.138440944851955 0.141032583640244 2 2 - 2287586 2287966 2287813.273 2287235 2289304 - gene protein_coding_gene FALSE TRUE AT2G05940.1 protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT5G35580.1); similar to Avr9/Cf-9 induced kinase 1 [Nicotiana tabacum] (GB:AAP03880.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.650951799453156 9.2780504952909 1.06877725994950e-05 0.0740876396596996 9.83253917871277 16.5736638075249 0.650951799453156 0.0268845132709310
AT2G40940_at 8.48958506727284 8.72942250569252 7.97678157312856 8.02311082055668 8.8149237863044 8.64050242813011 7.24427404098644 6.97203175388313 8.38133510288208 7.22605851486686 8.9616158053955 9.06694958944296 8.53513875429069 8.63707929143648 8.5151463263787 9.17586752751409 8.80772453735646 9.1736975066606 7.8579899638241 0.128679147019700 0.128679147019700 0.130616345828160 0.139292723551656 0.132004853727763 0.129143537196570 0.136387029356525 0.143926126414067 0.142347638902617 0.144964324795292 0.128931006873032 0.129407327418424 0.129372880749146 0.131731218589867 0.136487123627758 0.128679147019700 0.137433671847058 0.129219619409058 0.140060081558858 2 2|0 -|/ 17091742 17092536 17092119.1 17091434 17094375 - gene protein_coding_gene FALSE TRUE AT2G40940.1 ERS1 (ETHYLENE RESPONSE SENSOR 1); receptor Ethylene receptor, subfamily 1. Has histidine kinase activity. similar to ETR1 (ETHYLENE RESPONSE 1), two-component response regulator [Arabidopsis thaliana] (TAIR:AT1G66340.1); similar to ethylene receptor [Carica papaya] (GB:AAG41977.1); similar to ERS-like ethylene receptor [Pisum sativum] (GB:AAB94773.1); similar to ethylene response sensor [Brassica oleracea] (GB:AAC31157.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358) 0.771179600094816 9.27033586871138 1.07566537594248e-05 0.074554367206573 9.82845389424118 16.4518024692446 0.771179600094816 0.0701260267074285
AT1G63830_at 8.75864601337534 8.54366518241762 9.20143249423634 9.05579765576838 9.34547075132274 8.71831885401049 7.83979598461461 7.58671274341159 7.46641859315049 7.15015966401116 8.52245264099433 8.61759902821329 8.12524938579556 8.51411261177533 8.21507357925747 7.99698389313584 8.38041199728976 8.11303298831114 6.90178192135839 0.167582121218761 0.167305187976987 0.165039034416069 0.163045781735454 0.163045781735454 0.164930584552851 0.164524097484346 0.1703327142237 0.177397209775654 0.172528830937191 0.167146117499412 0.165980156898749 0.169242711734933 0.169291261996939 0.173577912904963 0.163045781735454 0.172368088516649 0.167957813108827 0.187432454152489 1 1|0 +|/ 23689449 23690644 23690172.778 23688862 23690985 + gene protein_coding_gene FALSE TRUE AT1G63830.1|AT1G63830.2 proline-rich family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41390.1); similar to Os10g0535800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065166.1); similar to Os03g0123600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048806.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN74842.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 1.01793887365147 9.26816281299039 1.07761449494774e-05 0.0746786844998783 9.82730217012722 16.3729305807796 1.01793887365147 0.125365759370467
AT2G26510_at 9.18128759439472 9.27577210444396 9.51369276006846 9.2872458739082 9.6938278518839 9.58270661503782 8.27806917198704 7.98561931231875 7.64310057286448 7.5189076630409 8.13936344320648 8.02736767811486 8.33972418905126 8.16393909306295 7.92911261652904 7.90955735259028 8.53634697847372 8.20822873502593 7.23998154231725 0.191740124858489 0.198102492462722 0.195277420970036 0.199798249260998 0.204660567789052 0.202967149619355 0.193962156098344 0.191713465489265 0.200556687766989 0.191272126809753 0.188350834561634 0.190607841828930 0.185715050669971 0.187954305975514 0.187130418235467 0.185366982594410 0.192220096058508 0.185366982594410 0.202579383230577 2 2|0 +|/ 11283557 11284518 11284123.6 11281023 11284708 + gene protein_coding_gene FALSE TRUE AT2G26510.1 PDE135 (PIGMENT DEFECTIVE EMBRYO 135); permease permease Identical to Nucleobase-ascorbate transporter 3 (AtNAT3) (NAT3) [Arabidopsis Thaliana] (GB:Q8GZD4;GB:O48718); similar to xanthine/uracil permease family protein [Arabidopsis thaliana] (TAIR:AT2G34190.1); similar to Xanthine/uracil/vitamin C permease [Medicago truncatula] (GB:ABE81237.1); similar to Os12g0583900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067149.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.764278157060543 9.24593238584964 1.09778056180030e-05 0.0760652151271429 9.81549516798493 16.9117951289209 0.764278157060543 0.0688053601498553
AT4G32870_at 7.63710266022425 8.18195436261261 6.42431770649658 6.69616303446707 4.70039366791782 4.57323797178053 6.79065122858729 8.19953906142875 6.23841992302147 5.97246271334823 4.23418901996465 4.48958561565045 4.59402865600497 4.69675689135263 3.68514569991064 4.14231011249947 4.52739747347511 4.84100428491004 5.54779409105696 0.216803967215891 0.219937176234939 0.222848126029913 0.230068650900996 0.217791639288435 0.223148750360077 0.2232227297351 0.223307209162391 0.223726221380216 0.215801493032721 0.215801493032721 0.217596884565971 0.219870299309433 0.220782052328859 0.215801493032721 0.217418466802645 0.222885043929558 0.222031166916916 0.215801493032721 4 4 + 15862217 15862586 15862392.364 15862147 15862745 + gene protein_coding_gene FALSE TRUE AT4G32870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25770.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78384.1); contains domain Bet v1-like (SSF55961); contains domain no description (G3D.3.30.530.20) -1.81102021148447 -9.24101826195708 1.1022946025264e-05 0.076366970063029 9.81287906682487 11.8108505258710 -1.81102021148447 0.266520855480974
AT3G02910_at 6.78040096133859 7.26255842249038 7.9559059584286 8.07177673288082 7.62726549309964 7.789970668346 7.1671724349707 7.33518999863892 7.23592113740153 7.69894853630938 8.5899265680489 8.19960374070303 8.59537440695355 8.12472134522175 8.24609333803034 8.91782005284375 8.8497046738088 8.18722580992703 7.41495339337329 0.175794203909338 0.154052627526084 0.161943745696726 0.152959735452697 0.157554687787648 0.158470913627100 0.157861927284866 0.166747555577886 0.169877517463048 0.164046886695419 0.155725208421232 0.159866876721015 0.153916556980474 0.166638899907170 0.162795239806885 0.153727085592264 0.155973225924994 0.159786267428752 0.162439557617212 3 3 + 649995 650522 650234.455 649821 650928 + gene protein_coding_gene FALSE TRUE AT3G02910.1 Identical to UPF0131 protein At3g02910 [Arabidopsis Thaliana] (GB:Q9M8T3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46720.1); similar to Os03g0854000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051934.1); similar to Uncharacterised protein family containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22357.1); similar to Os11g0139900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065707.1); contains InterPro domain Protein of unknown function UPF0131; (InterPro:IPR005347) 0.86938348920493 9.23333306790675 1.10939542283971e-05 0.0768478209401068 9.80878329847874 15.4556549659260 0.86938348920493 0.0948814280444647
AT1G21460_at 8.40936475496835 8.85036674524143 7.51374278422972 7.38757476777421 8.39389038692292 7.63724420427326 8.64937985451034 8.8367009325461 5.41826707195757 7.30314402864419 4.04114099962824 5.14727039420396 4.94579247858328 4.57164003800252 4.88410512758108 4.17433282912809 5.70839517323328 5.62112567410801 6.13635771471058 0.286980587196939 0.280033919264843 0.290429457285997 0.283223148698134 0.27744593993101 0.296152254557118 0.282774904223693 0.279298483184386 0.295171808051008 0.281674118429237 0.281351032857786 0.27744593993101 0.283274313692579 0.287206592164647 0.290374773111477 0.280770671724094 0.309262903677027 0.286196970960253 0.282752544556431 1 0|1 /|- 7512283 7512675 7512494.222 7511839 7513350 - gene protein_coding_gene FALSE TRUE AT1G21460.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT4G10850.1); similar to Os05g0426000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055599.1); similar to senescence-associated protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92465.1); similar to Os01g0881300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044998.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) -1.17626881757271 -9.2288911448864 1.11352270483885e-05 0.077122582537139 9.80641352948232 13.7961071926813 -1.17626881757271 0.156516798815962
AT1G73500_at 9.64594260946149 9.97011390832808 10.0327173451358 10.2925905322557 10.0293022937811 9.91980399939958 7.27826959939117 8.21730891714797 8.4321520857637 7.84574778988252 9.34202804254114 8.94498683226221 9.61844006745785 9.25297503313597 8.51275590923581 9.62877349899287 9.45633253426977 9.4347037386624 7.63633846331942 0.146557919936617 0.150407496405279 0.147802444155037 0.149012844835765 0.15109769722565 0.151142234319015 0.155277422312387 0.146873420172428 0.153908027879565 0.161537713427491 0.142379201749855 0.142379201749855 0.148355618217285 0.152514915004099 0.160920954162784 0.142645409285688 0.148390473305850 0.143381682633324 0.168587787790781 1 1 - 27643117 27643610 27643376.091 27642752 27644190 - gene protein_coding_gene FALSE TRUE AT1G73500.1 ATMKK9 (Arabidopsis thaliana MAP kinase kinase 9); kinase member of MAP Kinase Kinase similar to ATMKK7 (MAP KINASE KINASE7), kinase [Arabidopsis thaliana] (TAIR:AT1G18350.1); similar to double MYC-tagged mitogen activated protein kinase kinase 9 [synthetic construct] (GB:ABF55669.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 1.29657823073770 9.21727946541768 1.12439252328764e-05 0.077864182237669 9.80021010081953 18.0458997689751 1.29657823073770 0.178708233343900
AT2G25590_at 7.42491119943405 7.19668354945462 8.01724787401653 7.63902837505401 8.9083673821369 8.18962942308022 5.17058027542676 5.31591436908789 6.73222207404681 6.80795209760505 7.10924642000924 7.12940600992366 7.70096081326352 7.64899288961705 6.64942561155623 8.33024736614952 7.92136763523459 7.39547516178971 7.87423133746094 0.189142426507129 0.18920403736797 0.203230508622597 0.188635811112307 0.195746669317201 0.194773152472428 0.205426885515263 0.209364575497089 0.198362555744132 0.190628580463542 0.192654376455005 0.190258933280966 0.185931424048058 0.196178859210844 0.192965548729009 0.189376254060895 0.186088946318090 0.193904375538598 0.184716518523132 2 2|0 +|/ 10899177 10900716 10900216.222 10898373 10900850 + gene protein_coding_gene FALSE TRUE AT2G25590.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G32440.2); similar to Agenet [Medicago truncatula] (GB:ABE92607.1); contains InterPro domain Agenet; (InterPro:IPR008395) 1.12952549197988 9.21325832676148 1.12818413579321e-05 0.078115469562322 9.79805894555802 14.5446830100350 1.12952549197988 0.148145719147536
AT4G01870_at 5.06628851393414 5.41822011154592 7.66534659062716 7.75706626988611 4.27403975843169 4.91109978917915 4.70829780050433 4.38007988855705 3.63809040961598 3.84254080527303 4.35895763283632 4.74932548796378 4.03259697778191 4.60180401184355 4.40103080947873 4.95243600639637 4.68328340772623 4.75636775026436 3.51496719007576 0.259710297513226 0.249883071557117 0.265103627200171 0.277288469295449 0.242230085230278 0.246250731330961 0.249719181318663 0.25188431824541 0.256967497824805 0.248777434590628 0.25649242723581 0.242230085230278 0.242230085230278 0.254323698895377 0.257286599998613 0.242419069323124 0.24715161828828 0.253353980808885 0.251948986456169 4 4 - 808481 808934 808754.273 808376 810446 - gene protein_coding_gene FALSE TRUE AT4G01870.1 tolB protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21680.1); similar to putative protein [Gossypium hirsutum] (GB:AAT57937.1); similar to Os03g0840200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051846.1); similar to Os07g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060406.1); contains InterPro domain TolB, C-terminal; (InterPro:IPR011042); contains InterPro domain WD40-like Beta Propeller; (InterPro:IPR011659) 1.08022115780524 9.19899617963271 1.14174693954147e-05 0.0790431406244561 9.7904171881847 9.63864220476219 1.08022115780524 0.139074035465276
AT1G13730_at 5.36366359697175 5.69746181484551 4.71986936843956 4.82930972791222 4.97433553051119 4.67929216400271 7.38772796870876 7.21740094272946 4.4181053399498 5.43265839652638 5.14733204851476 5.83916827678729 5.51799936736085 4.74409714547606 5.39261671283223 4.94728593056 4.33234339081349 4.71521459347634 5.47146759468361 0.197152494654671 0.197747530066625 0.206933702634701 0.203766599848488 0.197152494654671 0.202744911089755 0.207054189715503 0.202805551043015 0.206013025467103 0.207783380812044 0.207399911896018 0.197152494654671 0.197152494654671 0.207193027304219 0.203795278805870 0.197152494654671 0.199558574474653 0.198982517916172 0.200974051862704 1 1|0 +|/ 4711393 4712204 4711634.4 4709825 4712547 + gene protein_coding_gene FALSE TRUE AT1G13730.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT2G03640.2); similar to putative ras-GTPase-activating protein SH3-domain binding protein [Trifolium pratense] (GB:BAE71222.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.821882571794874 -9.19266222106477 1.14782819690037e-05 0.079452667789444 9.78701736884935 10.7020914527389 -0.821882571794874 0.0846837522852095
AT1G08800_at 4.87630289206 5.02888470440431 5.7548083665403 5.98452516108903 6.96255896756244 6.5413109566417 6.03056110584154 5.75688079047754 4.28767427639551 5.06791989882645 5.88218141597805 4.87444562651856 5.7459275723626 5.89862412399984 4.03900265642643 5.99105765901536 6.43322850534008 5.36821456175204 4.58874331195755 0.209249378904951 0.207240774492919 0.200973859463809 0.201914109353517 0.203447692725469 0.210270367028164 0.202249898511271 0.201901667576826 0.208327376305499 0.215132428584484 0.200973859463809 0.203987546089986 0.204375981517827 0.216755004599949 0.204218037028035 0.204424424396249 0.206995704747152 0.205333849374132 0.203990599199005 1 1 - 2813605 2814156 2813851.545 2813064 2817642 - gene protein_coding_gene FALSE TRUE AT1G08800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30690.1); similar to Os10g0414800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064597.1); similar to Os01g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044407.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM15784.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.884308129605068 9.18864037408903 1.15170822248424e-05 0.0797097260781341 9.78485666834457 10.9555779985274 0.884308129605068 0.099171317653126
AT1G55760_at 5.02844942151427 5.07483424870034 6.36493151967773 6.60988743391252 7.06281797833965 5.9708427262412 4.85509779006348 4.95636846049137 2.45510023223114 3.41403202548337 4.26699035161386 3.57977429274256 5.01900279808536 4.52294955389207 3.32495345129638 4.08948715146679 5.20541881568286 5.18589629775167 3.61516135329043 0.230236050141669 0.234107749122327 0.237003911810537 0.241003100322089 0.241111570773993 0.246832972022837 0.235659101615304 0.237910962999126 0.23741379712411 0.236858137563233 0.230662434257866 0.23638490378176 0.233719996607730 0.238086047967962 0.258532332846329 0.230236050141669 0.238157774158415 0.232792033625095 0.238376975861999 1 1 - 20850794 20851358 20851140.545 20850574 20852720 - gene protein_coding_gene FALSE TRUE AT1G55760.1 BTB/POZ domain-containing protein similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21780.2); similar to BTB/POZ; TRAF-like [Medicago truncatula] (GB:ABE83107.1); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 1.38065515987427 9.18045329829773 1.15965160522966e-05 0.0802478910818928 9.78045359562 9.52077384373495 1.38065515987427 0.194624621988733
AT1G52000_at 8.03551271772859 8.51310798953228 6.9815887733168 7.48799837950518 9.05467402201025 8.1982640237681 5.085613398141 5.53087874385572 1.66573938316615 5.12908907221088 4.06880310819241 5.1308822020018 6.91670563113554 4.64886018406301 4.04236631367078 6.23906567052769 5.63257808997423 4.95876268465291 3.57839868364105 0.262265653659099 0.261468298497262 0.254611706468806 0.256978748813629 0.263498557346441 0.292743415958236 0.262952830182389 0.259664363983072 0.291169912583410 0.260104158976649 0.26410313384818 0.257587573735293 0.254611706468806 0.262342624566317 0.260746633507246 0.254611706468806 0.262123554561226 0.260524826782169 0.261244681191344 1 1 - 19337026 19337542 19337265.727 19336828 19339784 - gene protein_coding_gene FALSE TRUE AT1G52000.1 jacalin lectin family protein similar to MBP1 (MYROSINASE-BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G52040.1); similar to myrosinase-binding protein [Brassica napus] (GB:AAC08048.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) 1.44318184659515 9.16845748203323 1.17140027281817e-05 0.0810491848762892 9.77399089349322 11.6922024385822 1.44318184659515 0.205945756219402
AT4G36990_at 8.29364351136656 8.22835582050042 9.2690910704782 9.03991198345235 8.23187028130505 7.28886792237755 5.17443181106612 5.28637069284759 4.81447163936857 5.5202531655711 5.50877817064579 5.64212060160331 5.79224544461635 5.91625140507022 4.90825971459174 6.66449661488805 6.62028762230768 5.36103562705974 4.77990057145708 0.231600096499257 0.233492741541632 0.237661063361376 0.237496276374418 0.23632354196639 0.232794634798332 0.231468261121351 0.233575316538475 0.242137244900413 0.229151269358005 0.231245562125691 0.231979407698362 0.231018944260052 0.242707510798603 0.228280224041035 0.228280224041035 0.233387913190117 0.234167360767838 0.23484427772787 4 4 + 17441122 17441661 17441379.727 17440287 17442145 + gene protein_coding_gene FALSE TRUE AT4G36990.1 HSF4 (HEAT SHOCK FACTOR 4); DNA binding / transcription factor encodes a protein whose sequence is similar to heat shock factors that regulate the expression of heat shock proteins. Transcript level is increased in response to heat shock. However, overexpression of this gene did not result in the increase of decrease of heat shock proteins. Identical to Heat stress transcription factor B-1 (AtHsfB1) (Heat shock factor protein 4) (HSF 4) (Heat shock transcription factor 4) (HSTF 4) (HSFB1) [Arabidopsis Thaliana] (GB:Q96320;GB:O23186); similar to AT-HSFB2A (Arabidopsis thaliana heat shock transcription factor B2A), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62020.1); similar to heat shock factor [Nicotiana tabacum] (GB:BAA83710.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 1.23760539837853 9.16127609115205 1.17849681293808e-05 0.0815284095190561 9.77011552947956 13.0215143161226 1.23760539837853 0.169431854964971
AT3G28040_at 7.71542265050257 8.29065949072345 6.622452591974 6.41140774167654 7.74500338362192 7.91591861989433 8.80859345323142 9.02243981846649 9.27322864101864 8.77788592045932 8.82776449757573 9.09536728588667 8.32191618990662 8.46759015340765 8.79342278181968 8.43316015456978 6.79255584620872 8.39861376159483 9.02593243369952 0.149681756659641 0.147192750120119 0.163546506523425 0.174666786516391 0.150840041218138 0.148220446783242 0.143450909648768 0.149162639917227 0.148094806763135 0.149289292499591 0.143794082450965 0.143450909648768 0.149692570096883 0.145653869605846 0.146550086678632 0.143450909648768 0.171995144574022 0.149017293289534 0.147781829949398 3 3 + 10438962 10439475 10439232.909 10436294 10439628 + gene protein_coding_gene FALSE TRUE AT3G28040.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01890.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G56370.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92869.1); similar to Protein kinase [Medicago truncatula] (GB:ABE85779.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26311.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.95998338339695 -9.152388214875 1.18734574890199e-05 0.0821287054515506 9.76531261234828 16.5249778015599 -0.95998338339695 0.116137555683746
AT3G45010_at 9.62894875387948 9.73193794786867 10.7058806348453 10.8854026733959 11.3449201329914 11.0461627244175 10.3056718123889 10.2318611363757 9.26322484186877 9.68450846931056 9.9115475958212 9.4747276634911 9.77513318562265 9.86555146559646 9.38464249196076 10.1027120261682 10.2665346200599 10.0803480363850 9.257677207191 0.106259335404410 0.108806656795493 0.107249673528712 0.108227287443268 0.107814126978774 0.110496266672249 0.107892565969647 0.106377326432853 0.119530245593911 0.106069136563225 0.101828960210007 0.105279948168949 0.106235775914113 0.107758566470890 0.113030430411311 0.101828960210007 0.109218512315770 0.111593042959636 0.101828960210007 3 3|0 +|/ 16478961 16479784 16479357.8 16477275 16479974 + gene protein_coding_gene FALSE TRUE AT3G45010.1 SCPL48 (serine carboxypeptidase-like 48); serine carboxypeptidase similar to SCPL47 (serine carboxypeptidase-like 47), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT5G22980.1); similar to SCPL49 (serine carboxypeptidase-like 49), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G10410.1); similar to Serine carboxypeptidase [Prunus mume] (GB:BAE48666.1); similar to carboxypeptidase Y-like protein (GB:AAB04606.1); similar to putative serine carboxypeptidase precursor [Gossypium hirsutum] (GB:AAL67992.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.738416379149524 9.13096127234755 1.20898318560600e-05 0.0836132771165112 9.7537033229536 20.1148247979012 0.738416379149524 0.0641794730246462
AT4G21980_at 9.0194770891357 9.02802845606658 9.55524133994697 9.43273598618847 9.5282087005421 9.12674831110543 7.91202155008914 7.5486814542241 7.30446103238293 7.0831374942108 8.03782670763762 7.73295373443366 8.13237349637407 8.23168534178829 7.64901659187979 8.18726248920095 7.82802981850208 7.79206579228399 7.37103726675845 0.220803245495960 0.220134894024354 0.226918251805968 0.223036673621655 0.228266821032949 0.238170415898917 0.212385296516061 0.217630840924111 0.245229345104079 0.218217947614954 0.214598585642474 0.209539893556411 0.218444315023841 0.218218334870697 0.217708126042046 0.209557995346214 0.22418920037706 0.224277435446438 0.21243703057719 4 4|0 +|/ 11655932 11656725 11656425 11655601 11657046 + gene protein_coding_gene FALSE TRUE AT4G21980.1|AT4G21980.2 APG8A (autophagy 8A) Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. Highest expression in flowers. mRNA abundance increased during dark-induced carbon starvation. Predominantly cytoplasmic with or without N starvation. Upon concanamycin A the protein accumulates in the central vacuole as punctuate structures that resemble autophagic bodies. This localization is more abundant upon N starvation. similar to ATG8B (AUTOPHAGY 8B), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G04620.2); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.864852297897682 9.1291157413709 1.21086719442595e-05 0.0837314664945544 9.75270138584864 16.4947830330606 0.864852297897682 0.0960830845293389
AT4G26270_at 8.39041350262476 8.36060409869216 9.04902506457961 8.69853481591284 7.84275836843628 7.49518164797312 5.29931002481212 5.39711218573619 5.72068746364077 5.1846459291648 5.45614867258216 5.46401793177871 5.06007307653693 5.91853080943885 5.17522432704394 5.29765904120173 6.20130356031641 5.65631738517195 4.95656574857658 0.236897460150138 0.248881984149229 0.25048164962893 0.243005449450858 0.246666118125430 0.249402171351177 0.238589760569778 0.243695847576530 0.248873109918321 0.241640701306886 0.248488639032593 0.236897460150138 0.236897460150138 0.247997644363195 0.242820845640857 0.242585770220085 0.247804162603117 0.238650210213637 0.240926140293465 4 4 - 13301113 13302005 13301365.273 13300804 13304356 - gene protein_coding_gene FALSE TRUE AT4G26270.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G32840.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G29220.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE84859.1); similar to Phosphofructokinase, putative [Medicago truncatula] (GB:ABE90419.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE80791.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.825437328986971 9.11410190237198 1.22631555545679e-05 0.0847874575042821 9.74453848965025 12.9745969957473 0.825437328986971 0.0872351471362703
AT4G27000_at 9.30821134553761 9.39007703305488 9.52815844341797 9.5292771836183 10.0095949335692 10.0288921396679 8.86096062705898 9.05183763812286 9.13369188584769 8.93032902752706 10.0845948420563 9.83135287525172 10.0348845678711 9.80484711081112 9.86026928159976 9.77246174321854 9.71358025683468 9.37075250698798 9.28750000599759 0.146397385592682 0.141038670259786 0.143733678995435 0.149822106404661 0.137158134375224 0.145949285576629 0.142166621367636 0.147909657165316 0.153441022746258 0.152061514289537 0.135784549975633 0.134628403671459 0.139144841878953 0.153603487708108 0.136820386197225 0.136989776913515 0.140806169474259 0.148571409974879 0.143382230604331 4 4|0 -|/ 13555135 13556935 13555674.875 13554610 13557860 - gene protein_coding_gene FALSE TRUE AT4G27000.1 RNA-binding protein 45 (RBP45), putative similar to ATRBP45A (RNA-BINDING PROTEIN 45A), RNA binding [Arabidopsis thaliana] (TAIR:AT5G54900.1); similar to RNA Binding Protein 45 [Nicotiana plumba (GB:CAC01237.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.656564136206454 9.10594382552693 1.23480125396127e-05 0.0853618106863424 9.74009411389335 18.9265094369408 0.656564136206454 0.0360974183097796
AT3G23940_at 6.14319191233414 6.59115229907994 5.55173122842738 5.33139178233009 4.84404728017395 4.80608122945174 6.47807471873659 6.83383126349153 5.75572889254923 6.4251890980967 5.50091121494589 6.50940340405132 5.08890035080801 5.09322175586721 6.6766891370198 5.33929325834468 4.93992441787262 5.85408062612182 6.0113610322222 0.189833568709017 0.194045937844527 0.186985017543719 0.186297371118969 0.191060397136879 0.189017627765971 0.189293732120566 0.192089766880751 0.192286827347206 0.186297371118969 0.189522160506960 0.186297371118969 0.186297371118969 0.195084359758199 0.192340598286719 0.190181614699592 0.209800164456940 0.188693420091312 0.188112940587637 3 3|0 +|/ 8650929 8652288 8651651.6 8648712 8652612 + gene protein_coding_gene FALSE TRUE AT3G23940.1 dehydratase family similar to dihydroxy-acid dehydratase [Rhodopirellula baltica SH 1] (GB:NP_870314.1); similar to dihydroxy-acid dehydratase [Blastopirellula marina DSM 3645] (GB:ZP_01094431.1); similar to Dihydroxy-acid dehydratase (DAD) (GB:Q7UJ69); contains InterPro domain Dihydroxy-acid and 6-phosphogluconate dehydratase; (InterPro:IPR000581); contains InterPro domain Dihydroxy-acid dehydratase; (InterPro:IPR004404) -0.908519827654275 -9.10420815491281 1.23661501199955e-05 0.0854748296294091 9.73914774160103 11.6671357283790 -0.908519827654275 0.106287424500250
AT3G01500_at 12.6378881999811 13.0126221279158 11.3578202331906 11.5898699106863 11.7335010966313 11.8403173538791 13.5357099428414 13.8242458885322 14.0143507120333 14.0928431978665 13.9441121258939 14.2881858001729 13.8106312786880 14.0095970543867 13.9724843368469 14.1874748543443 13.3192222983043 14.1644725683185 14.0055455516828 0.0906627838480583 0.0871321850050033 0.093203201184546 0.0956251248502595 0.0877077613085022 0.0965274326570568 0.0872290739796588 0.0871321850050033 0.0965352300416178 0.0908828778715513 0.0898897340191998 0.0871321850050033 0.0875085122148984 0.0885189427236581 0.0899398960013948 0.0871321850050033 0.0963947737139143 0.0943098788062825 0.0894116844053147 3 3 - 195199 196236 195822.091 194731 198026 - gene protein_coding_gene FALSE TRUE AT3G01500.1|AT3G01500.2|AT3G01500.3|AT3G01500.4 CA1 (CARBONIC ANHYDRASE 1); carbonate dehydratase/ zinc ion binding Identical to Carbonic anhydrase, chloroplast precursor (EC 4.2.1.1) (Carbonate dehydratase) (CA1) [Arabidopsis Thaliana] (GB:P27140;GB:Q8RWW2;GB:Q93VR8); similar to CA2 (BETA CARBONIC ANHYDRASE 2), carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G14740.2); similar to chloroplast carbonic anhydrase precursor [Thlaspi caerulescens] (GB:AAS65454.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.848898336064437 -9.10160583021494 1.23933995006375e-05 0.0856507839489057 9.737728294514 26.4412980242807 -0.848898336064437 0.0930215540505414
AT3G52470_at 7.91652114868184 7.99481343044879 8.69706084833962 8.7905999490566 7.66980792090657 7.48389783559583 8.1264562439435 7.84765087539704 7.0429980257072 6.7248519275187 7.90668254292982 8.4377896431335 7.41749586349509 7.9939932311972 8.4329811875521 8.25386076065154 7.83887003770057 8.0352122664015 6.56300494510029 0.187474205824987 0.181580353987174 0.187926771906234 0.189394644435012 0.186945789120836 0.183305350798227 0.185065098097659 0.185673894946114 0.204140248708736 0.210890817746233 0.182017480773313 0.181580353987174 0.187793023669933 0.189017927875686 0.181580353987174 0.181580353987174 0.183985380024308 0.187246363838142 0.195542314533838 3 3 + 19461763 19462239 19461943.273 19461627 19462960 + gene protein_coding_gene FALSE TRUE AT3G52470.1 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein similar to NHL12 (NDR1/HIN1-like 12) [Arabidopsis thaliana] (TAIR:AT2G35960.1); similar to Os12g0159600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066211.1); similar to H0913C04.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86171.1); similar to Os11g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065799.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.725820136357068 9.07838869805078 1.26394772878684e-05 0.0873387880591709 9.725036090776 15.4741321937503 0.725820136357068 0.0617138840513167
AT2G47850_at 5.76940438566576 5.86678752820579 5.37531463726022 5.35250318078699 6.71365969013016 6.43164563094011 5.10580524249209 5.04759714234588 4.82454524953498 4.63107182100766 5.68824355318283 5.6106052080725 5.18380058551197 6.01833818132258 5.70311441565921 5.65757760084108 5.32479304577086 5.34214553584234 4.62479912737922 0.249964549400624 0.238534938504141 0.238514650496458 0.238536596455478 0.242547617690885 0.23850597769134 0.240838718994005 0.240830177926354 0.242157583926987 0.245899803313793 0.234540301839720 0.238497454552930 0.240865417455432 0.242080186041347 0.243517274149569 0.239223767620110 0.243916152841521 0.245084667941853 0.254342006732885 2 2 + 19604508 19605124 19604900.455 19602710 19605651 + gene protein_coding_gene FALSE TRUE AT2G47850.1|AT2G47850.2|AT2G47850.3 zinc finger (CCCH-type) family protein Identical to Zinc finger CCCH domain-containing protein ZFN-like 1 [Arabidopsis Thaliana] (GB:Q84W91;GB:O82252); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G06410.1); similar to Os01g0257400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042632.1); similar to Zinc finger CCCH domain-containing protein ZFN-like 3 (GB:Q5NAV3); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571)|Identical to Zinc finger CCCH domain-containing protein ZFN-like 1 [Arabidopsis Thaliana] (GB:Q84W91;GB:O82252); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to Os01g0257400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042632.1); similar to Zinc finger CCCH domain-containing protein ZFN-like 3 (GB:Q5NAV3); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.696743704951732 9.06808671981811 1.27503982953466e-05 0.08809250182255 9.7193879044354 10.8376143456031 0.696743704951732 0.0527529976009484
AT1G15930_at 10.6332432299836 10.9032051024217 9.89580855882254 10.0217113660459 10.2723615987058 10.2070632991904 10.6819274101856 10.8186166604414 10.5422824393833 10.5371785603714 9.83520747976002 10.1228532474350 9.74947863803713 9.65914736825882 10.3688485915349 9.40051556412734 9.44107077397137 9.58845416834254 10.5198395819412 0.104413504754122 0.10486809379941 0.105280963004216 0.106144443883691 0.106242966577900 0.113046171952360 0.106071523626094 0.109551320309289 0.117507301602073 0.103937724897294 0.105303924967351 0.105727231061350 0.110698582031708 0.108245443651016 0.103937724897294 0.110099695253645 0.115125422349170 0.115298122707841 0.103937724897294 1 1 + 5472222 5472691 5472389.364 5471394 5473008 + gene protein_coding_gene FALSE TRUE AT1G15930.1|AT1G15930.2 40S ribosomal protein S12 (RPS12A) Identical to 40S ribosomal protein S12-1 (RPS12A) [Arabidopsis Thaliana] (GB:Q9S9P1); similar to 40S ribosomal protein S12 (RPS12C) [Arabidopsis thaliana] (TAIR:AT2G32060.2); similar to Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Medicago truncatula] (GB:ABE87516.1); contains InterPro domain Ribosomal protein S12E; (InterPro:IPR000530); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.711207555016068 -9.05350295576012 1.29092702676340e-05 0.0891772390088154 9.71137492601203 20.5811407396406 -0.711207555016068 0.0578320486692205
AT4G14420_at 8.62403787300213 8.87406025328661 9.0194259894132 9.29125251141686 8.70277286518112 8.05348314707852 6.052714005666 6.72594586024841 5.46009091457359 4.7642857162389 6.18928971310815 7.58201966537025 6.32954020248915 6.57548790179496 6.79336627359958 5.56459543983105 4.83673531352275 5.87288833030804 4.5356070886205 0.262720626567332 0.260592721291036 0.262591126530283 0.260950969744859 0.266823700342298 0.265835219652824 0.264622462386104 0.257239962042355 0.266226918632085 0.265540400982534 0.258231609878266 0.257239962042355 0.257239962042355 0.257239962042355 0.264192270076588 0.259337522235440 0.271331424128516 0.257239962042355 0.262740422834622 4 4|0 -|/ 8302195 8303708 8302773.222 8301942 8303911 - gene protein_coding_gene FALSE TRUE AT4G14420.1 lesion inducing protein-related similar to lesion inducing protein-related [Arabidopsis thaliana] (TAIR:AT1G04340.1); similar to ORF; able to induce HR-like lesions [Nicotiana tabacum] (GB:AAC49975.1); contains InterPro domain Surfeit locus 4-related; (InterPro:IPR011592); contains InterPro domain HR-like lesion-inducer; (InterPro:IPR008637) 1.24776995604015 9.05216431541827 1.29239626695794e-05 0.0892658101587851 9.71063840175882 13.7369540272353 1.24776995604015 0.174022716450028
AT2G17290_at 7.59009077825176 7.83414214717184 8.17245857544856 7.92555333244318 7.89837641613358 7.69162762304486 5.69644738261452 5.45687506010167 5.12036318477179 4.23846735466439 4.61948254933657 4.16200262472096 5.11747955907126 5.35477583402995 4.35912697774455 5.30781158313883 5.72755521437574 4.24103776160174 4.28488524201076 0.201908466549644 0.205062224678238 0.204447363942728 0.207457316936038 0.208652937230608 0.201908466549644 0.206509146243980 0.212954596836904 0.223536518998452 0.2115912123573 0.20834729635063 0.207538240059069 0.208671259219275 0.208633558815573 0.209234052030803 0.206224730510688 0.214451542199301 0.211117299021593 0.211619595333970 2 2|0 +|/ 7525470 7526071 7525848.2 7523497 7526715 + gene protein_coding_gene FALSE TRUE AT2G17290.1 CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase Encodes calcium dependent protein kinase 6 (CPK6), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK6 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK3 is also a member of the Arabidopsis CDPK family. similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G10660.1); similar to CPK1 (calcium-dependent protein kinase isoform AK1), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G04870.1); similar to putative calcium dependent kinase 6 [Brassica rapa subsp. pekinensis] (GB:AAZ32752.1); similar to calcium dependent kinase 5 [Brassica oleracea var. alboglabra] (GB:AAZ32751.1); similar to putative calcium dependent kinase 6 [Brassica napus] (GB:AAZ32753.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.795434448626369 9.04989584064615 1.29489029086960e-05 0.0894251234874543 9.70938988954283 11.9877285511436 0.795434448626369 0.081292090937482
AT1G25275_at 11.9288683808416 11.9132562348172 12.2096965099999 12.2441213393760 12.5297363765406 12.3491464703136 10.8493578132495 10.8198164465137 11.6360464884665 11.5047748105299 11.9837905524286 12.1433296886970 11.7944537254700 11.9271467819426 11.8202020185732 11.8635034704259 11.7425323017382 11.9811227757730 11.5832990446095 0.0775478192558678 0.0783209204345745 0.0799216390560942 0.080172225843362 0.08092131227593 0.0807099450793776 0.0780699271741217 0.0785725983156653 0.0837327061354432 0.077916384420998 0.0746217830222243 0.07464116765669 0.0767679840426045 0.080817765300595 0.0766212080875107 0.0742849295817277 0.0819388738942233 0.0777647134635548 0.0765449749649439 1 1|0 +|/ 8860717 8860951 8860804 8860658 8861349 + gene protein_coding_gene FALSE TRUE AT1G25275.1|AT1G25275.2|AT1G25275.3 unknown protein 0.643826919190564 9.03646730416874 1.30976368517390e-05 0.090439182461258 9.70198909753366 23.5963584192480 0.643826919190564 0.0323358622607687
AT1G77000_at 7.89358795688064 7.66220420437228 8.09759968705977 7.77689191913746 9.14420368168232 8.73746800573938 7.1881774496311 6.73122744171052 4.96223220504183 6.00645767270042 6.60180665394855 5.86881217258145 7.01072630366304 6.86935611189196 5.29721849853875 6.4193085728518 7.30476717719861 6.20663434661497 5.61575749122078 0.170659490888856 0.169789235257373 0.171571838062271 0.170524255670307 0.181409024954573 0.172594584542595 0.169821312043124 0.178364964244341 0.187280182481098 0.174641636784458 0.174735330095893 0.17738301928223 0.169506421271975 0.175921357035063 0.172248902997403 0.170800222283348 0.187616772822794 0.181544228628618 0.170466019883228 1 1 + 28946793 28947239 28947038.545 28945644 28947490 + gene protein_coding_gene FALSE TRUE AT1G77000.1 ATSKP2;2 (ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2); ubiquitin-protein ligase AtSKP2;2 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G21410.1); similar to Os05g0425700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055598.1); similar to Os01g0881900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045004.1); similar to GA21468-PA [Drosophila pseudoobscura] (GB:EAL25131.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.994710583464781 9.02560857764336 1.32192926859614e-05 0.0912659967038773 9.69599198334994 13.8916589696011 0.994710583464781 0.126060450025374
AT4G22780_at 6.25474414817935 6.49460157353976 6.69209927550942 6.65885031518916 7.06786878738536 6.55674254338877 4.53259692405331 4.57359849342369 3.57236133742112 3.74459770074155 3.71215754371418 4.4233652510664 4.31368927584066 3.8418991980975 3.64144286981353 4.25970466647660 4.7822779397713 3.50586817387121 3.52677595293516 0.247006393452472 0.240797456227389 0.251958866399982 0.243646963896889 0.240834669635274 0.241311200066961 0.249458315031435 0.242383929387754 0.250544982337225 0.241193896252842 0.241342011492493 0.242515719081008 0.240797456227389 0.240797456227389 0.250239535466546 0.240797456227389 0.246651968002195 0.240797456227389 0.258454163047319 4 4 - 11968754 11969359 11969064.182 11968287 11971158 - gene protein_coding_gene FALSE TRUE AT4G22780.1 ACR7 (ACT Domain Repeat 7) Member of a family of ACT domain containing proteins . ACT domains are involved in amino acid binding . similar to ACR8 (ACT Domain Repeat 8) [Arabidopsis thaliana] (TAIR:AT1G12420.1); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os08g0118100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060867.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.862738615017314 9.0120577510895 1.33728693598014e-05 0.092312917190709 9.6884922120066 9.94120223018228 0.862738615017314 0.0981340866857169
AT3G17100_at 7.94731724954003 8.05136820013885 7.82111976163729 7.9529713369301 8.67243373648882 8.55612540961608 7.83859899776277 7.95015078118818 7.92991809312869 7.60770629684084 9.37355219774475 9.13825736786091 9.26908595002778 8.90813050628257 9.19274806354801 9.12367802034558 8.56735713585378 8.79069385902716 8.55634799375635 0.143640171460551 0.140231395814523 0.14497340825959 0.140352181504407 0.138840442541684 0.142368834200554 0.143244095483582 0.148193491681018 0.143992936006707 0.140876463680311 0.141929502239442 0.141947960624480 0.143277488071502 0.154335838590425 0.145190621530914 0.139994198192242 0.151797214423949 0.141824614944899 0.136952730348162 3 3 + 5831675 5832159 5831886.909 5831200 5832425 + gene protein_coding_gene FALSE TRUE AT3G17100.1|AT3G17100.2 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06590.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE82804.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 0.658958756844153 9.00822446393807 1.34166714818646e-05 0.0926018665678292 9.6863674613956 16.6371416919102 0.658958756844153 0.040282303076484
AT3G20300_at 7.01630510729034 7.08121057765793 7.89712934998214 8.00162413077527 8.5441846202696 8.4200601304937 7.87275285689281 8.24411778881293 8.1145481186526 7.71004783453853 8.89846346712174 8.0493334393355 8.70220435230107 8.8514205900946 8.82716323844615 8.65575554371645 8.5451066698693 8.52760748904442 7.54305686296653 0.169717165038882 0.174663879531739 0.169905121558325 0.165400207823783 0.159068602043356 0.181131908373961 0.168167582189482 0.159681581421932 0.175452934444178 0.166477631355308 0.16453012562138 0.159196856694100 0.159088179556764 0.164998501401272 0.163523987975102 0.161456284344316 0.171171510072615 0.158165799801108 0.165799770231412 3 3 - 7079866 7080579 7080252.455 7079623 7081925 - gene protein_coding_gene FALSE TRUE AT3G20300.1 extracellular ligand-gated ion channel similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to AT3g20300/MQC12_5 [Medicago truncatula] (GB:ABD32643.1); contains InterPro domain Neurotransmitter-gated ion-channel ligand-binding; (InterPro:IPR006202) 0.752533609285969 9.00689208164346 1.34319335357995e-05 0.0926937733305522 9.6856286051422 16.0953477973354 0.752533609285969 0.071026382102707
AT3G20670_at 7.36177014736459 7.44505733630652 6.61848482475925 6.42048991506454 6.20530151366408 6.20205603178473 7.07814595323333 7.55503489118862 7.93312022710751 7.89511284899947 7.41853035983153 7.82903400216824 6.3404923670846 7.01635770172078 7.92440178597343 7.2513388838627 5.95296168348536 6.6014465077263 7.27356846636354 0.191743043957117 0.180562427223870 0.183927512321414 0.193206385899255 0.190510508240291 0.190684060722497 0.188824024634377 0.181177028929185 0.188126445387217 0.183624912591134 0.183152215756703 0.179911683510722 0.206152997091368 0.183835761014797 0.185061236329867 0.180221937088468 0.19943153240557 0.182427299785678 0.185426561446914 3 3 + 7229491 7229939 7229718.273 7229413 7230152 + gene protein_coding_gene FALSE TRUE AT3G20670.1 histone H2A, putative Identical to Probable histone H2A.2 (HTA13) [Arabidopsis Thaliana] (GB:Q9LHQ5); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT1G51060.1); similar to Protein H2A.7 (wcH2A-4) (wcH2A-10) (GB:Q43312); similar to Os08g0427700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061844.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.82859955669017 -8.99801043471514 1.35341631615121e-05 0.0933857258144337 9.68069903258983 14.2320030394899 -0.82859955669017 0.0905147579852543
AT3G21560_at 7.42068946787304 7.52998090540102 8.6306769524385 8.81319747120208 6.02453751431553 6.45875683630996 4.13159289158728 3.90470971013448 3.2674955940107 4.04764390365863 3.73070292200643 4.56116452386152 4.23281892093237 3.46010270232202 3.71081284175604 3.59028852093998 3.52417005529399 3.14279305906493 4.1136708216561 0.318661487371784 0.316962113202051 0.31977898441887 0.317542941488815 0.312109111511309 0.322867142510174 0.302074513927830 0.305889134731316 0.319144547953103 0.302074513927830 0.302085554622109 0.302074513927830 0.30731452411712 0.304488225130846 0.30948731963833 0.302074513927830 0.321577978272425 0.316501717905919 0.302358090000983 3 3 + 7596802 7597336 7597061.364 7595812 7597583 + gene protein_coding_gene FALSE TRUE AT3G21560.1 UGT84A2; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase Encodes a protein with sinapic acid:UDP-glucose glucosyltransferase activity. Mutants defective in this gene are hyper-fluorescent (which accumulate in their trichomes a compound that is likely to be 3',5'-dimethoxynaringenin chalcone or sinapoyltriacetic acid lactone, potential products of the concerted action of 4-coumarate CoA ligase and chalcone synthase on sinapic acid). similar to UGT84A4, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G15500.1); similar to UGT84A3, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15490.1); similar to UDP-glucose:sinapate glucosyltransferase [Brassica napus] (GB:AAF98390.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.83477610165729 8.97712588202506 1.37779631775187e-05 0.0950541679617016 9.6690775314263 10.3911227851814 0.83477610165729 0.0924314032052422
AT2G16990_at 7.6477294854904 7.4063211936791 7.91860756330568 7.76736739173391 8.26116959789695 7.86771113980604 8.07306631803711 7.65933897466043 5.16195925357624 6.0244462918105 7.21640143843324 6.90476046876015 7.78012864707138 6.98041305849743 6.72585754447522 7.14480419682314 8.02964180961025 6.96593424482573 5.75703708400172 0.195442511271553 0.193917385251948 0.195353534635896 0.196123074192936 0.194992469426731 0.19425646670446 0.193453915033025 0.192102139398881 0.227335464811114 0.207773380383034 0.192102139398881 0.192102139398881 0.192102139398881 0.198111205937758 0.193777418781014 0.192102139398881 0.192557268212592 0.208135004161818 0.203614243568670 2 0|2 /|+ 7393668 7394798 7394233.75 7390117 7394936 + gene protein_coding_gene FALSE TRUE AT2G16990.1|AT2G16990.2 tetracycline transporter| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16980.2); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE80432.1); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.913889198242399 8.96795308172272 1.38865785666938e-05 0.095789618953054 9.66395987460376 14.2583174010053 0.913889198242399 0.110420731798132
AT2G06050_at 9.72800255907503 9.90658541349983 9.35805860739207 9.23299588219555 8.58505888359001 8.59168382396037 7.676133302633 8.05194769974185 6.00532210259991 7.41290656264486 7.99433839219962 8.59443845547719 7.78876722289548 8.052280001317 7.84716186567763 8.60774489597704 8.05407992037715 8.24437611161219 6.74945492716984 0.153069360122872 0.150841439465858 0.150691260466807 0.151330569408973 0.151313649435617 0.149565419405121 0.150845883910629 0.151002026393577 0.190529161463416 0.166051238762482 0.150038791170061 0.154345289532122 0.155173448949499 0.147115205616413 0.148586383073575 0.146237048341275 0.156316345748419 0.146237048341275 0.160776263893074 2 2 - 2359256 2359791 2359561.545 2359111 2362299 - gene protein_coding_gene FALSE TRUE AT2G06050.1|AT2G06050.2|AT2G06050.3 OPR3 (OPDA-REDUCTASE 3); 12-oxophytodienoate reductase|OPR3 (OPDA-REDUCTASE 3) Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence. Identical to 12-oxophytodienoate reductase 3 (EC 1.3.1.42) (12-oxophytodienoate- 10,11-reductase 3) (OPDA-reductase 3) (Delayed dehiscence 1) (AtOPR3) (OPR3) [Arabidopsis Thaliana] (GB:Q9FUP0;GB:Q9LLD6;GB:Q9SCY4;GB:Q9XHD2;GB:Q9ZQ01); similar to OPR2 (12-oxophytodienoate reductase 2), 12-oxophytodienoate reductase [Arabidopsis thaliana] (TAIR:AT1G76690.1); similar to 12-oxophytodienoate reductase 3 (12-oxophytodienoate-10,11-reductase 3) (OPDA-reductase 3) (LeOPR3) (GB:Q9FEW9); similar to Chain A, Crystal Structure Of The E291k Mutant Of 12- Oxophytodienoate Reductase 3 (Opr3) From Tomato (GB:2HS6); contains InterPro domain NADH:flavin oxidoreductase/NADH oxidase; (InterPro:IPR001155) 0.763309608133599 8.95156556454388 1.40829932455769e-05 0.0971304044147442 9.65479670506394 16.3265380493426 0.763309608133599 0.075196756295513
AT4G39770_at 4.49280237105709 4.61370149220321 5.36723128809921 5.46686855858368 6.79285935147054 6.12462328034942 6.99567335254202 7.05718490674664 4.32549787950146 5.15017512728342 7.10320255101938 7.36422117169078 6.57317459252022 6.6952129484499 6.71105871730707 6.66371905531222 5.946835344265 6.8116345340818 5.45185106812918 0.251463573005988 0.241904988532674 0.245663248263652 0.260414765596259 0.244357678687823 0.248804403107810 0.250062686620336 0.26638392361373 0.269906491438498 0.250848331824281 0.255622021296372 0.24692826072505 0.251079768090864 0.254703846362100 0.245542871327175 0.252128175338437 0.26120011010244 0.253814317139211 0.242856148629569 4 4|0 -|/ 18449500 18450228 18449870.4 18448974 18451287 - gene protein_coding_gene FALSE TRUE AT4G39770.1 trehalose-6-phosphate phosphatase, putative similar to trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT2G22190.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) 0.952923047507288 8.94421789477326 1.41720576005744e-05 0.0977305092135612 9.65067974427746 11.7186049364492 0.952923047507288 0.119253035032274
AT1G05300_at 6.47525984628433 7.0466828101173 6.3904670692708 6.98953023876729 8.47572511283296 8.28498112291182 4.08394200178276 3.93511892803746 3.45031699761005 2.67090805440768 2.58441798072249 2.33424025230175 2.89887247844153 3.01170003473341 1.91447979243386 3.70390338019797 4.81220277173211 2.32327643441133 2.56021440593775 0.338950301708379 0.345241144380186 0.332730293635968 0.333693934661539 0.336970977749786 0.328125879523993 0.328934611061975 0.328125879523993 0.333149062467797 0.328125879523993 0.328125879523993 0.328125879523993 0.330074989012487 0.328125879523993 0.338020717401253 0.333269467400973 0.330432031634947 0.344118498300355 0.332151821743883 1 1 - 1545300 1547199 1546085.4 1545105 1547848 - gene protein_coding_gene FALSE TRUE AT1G05300.1|AT1G05300.2 ZIP5 (ZINC TRANSPORTER 5 PRECURSOR); cation transporter member of Fe(II) transporter isolog family Identical to Zinc transporter 5 precursor (ZRT/IRT-like protein 5) (ZIP5) [Arabidopsis Thaliana] (GB:O23039;GB:Q6ICX1); similar to ZIP3 (ZINC TRANSPORTER 3 PRECURSOR), zinc ion transporter [Arabidopsis thaliana] (TAIR:AT2G32270.1); similar to hypothetical protein [Thlaspi caerulescens] (GB:CAI77926.2); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689)|Identical to Zinc transporter 5 precursor (ZRT/IRT-like protein 5) (ZIP5) [Arabidopsis Thaliana] (GB:O23039;GB:Q6ICX1); similar to ZIP3 (ZINC TRANSPORTER 3 PRECURSOR), zinc ion transporter [Arabidopsis thaliana] (TAIR:AT2G32270.1); similar to putative Zn transporter [Thlaspi caerulescens] (GB:CAI77925.2); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 1.10199923868012 8.94181488432674 1.42013208469697e-05 0.0979181072398562 9.6493321773875 9.3810632878874 1.10199923868012 0.149262277103128
AT3G44735_at 5.16917519559799 5.7258331730812 6.30109845675586 6.62038005517944 7.36919924166154 6.99126843391972 7.8190982445742 7.44703739503393 6.38116416127514 6.69723090760419 9.87389882740986 8.9426298904225 9.06404442708006 9.32526457142715 8.07577946401806 8.34020100655924 7.82569259764718 7.97800332888844 7.34485080442599 0.238862761915448 0.227392299227889 0.239250169428406 0.236903126573761 0.226961595737208 0.232447045024645 0.224183487829278 0.228231444486578 0.241881505268773 0.246421738092335 0.233000856296771 0.228662610458333 0.237772627730434 0.232303267180354 0.238034112079231 0.225622006479925 0.227300265563093 0.244718756446571 0.241654383661099 3 3|0 -|/ 16302379 16303079 16302760.5 16302181 16303139 - gene protein_coding_gene FALSE TRUE AT3G44735.1 PSK1 (PHYTOSULFOKINE 3 PRECURSOR); growth factor Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Identical to Putative phytosulfokines 6 precursor (AtPSK6) (AtPSK3_2) [Contains: Phytosulfokine-alpha-like (PSK-alpha-like) (Phytosulfokine-a-like); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] (PSK6) [Arabidopsis Thaliana] (GB:Q8LA14;GB:Q7PCC2;GB:Q8W5Q9); similar to TPA: TPA_exp: putative phytosulfokine peptide precursor [Glycine max] (GB:DAA00281.1); contains InterPro domain Phytosulfokine; (InterPro:IPR009438) 1.07532059227688 8.94147913622874 1.42054148295374e-05 0.097932129834831 9.64914385086448 14.4233552187838 1.07532059227688 0.144069417433068
AT4G27340_at 5.66537589216242 5.62533448733193 5.43115765912015 5.23309726803493 5.38479068765537 5.09947075163229 6.07316771235346 5.85513498481894 4.21463828871668 4.90770033525236 2.96391478593226 3.51959244231739 3.5530224996824 3.49400928248282 3.76284050546367 4.51177477408816 4.49047481230291 3.42885662026926 4.95907142913772 0.254796919025691 0.247225029513639 0.244767076922776 0.244767076922776 0.245517358698675 0.256346496704543 0.250970433228864 0.245455200913570 0.244767076922776 0.244901808965455 0.244767076922776 0.251189991051459 0.257853425020246 0.260659645089612 0.258308356315161 0.244767076922776 0.250251747113768 0.256155931612008 0.246005930291201 4 4 - 13687417 13688912 13688225.25 13687202 13690475 - gene protein_coding_gene FALSE TRUE AT4G27340.1 Met-10+ like family protein similar to Met-10+ like family protein [Arabidopsis thaliana] (TAIR:AT3G56120.1); similar to putative tRNA-(N1G37) methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD68985.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Protein of unknown function Met10; (InterPro:IPR003402) -0.747933406637112 -8.93972955560263 1.42267697131454e-05 0.0980651236327114 9.64816230518965 9.75062321356516 -0.747933406637112 0.0713054451856368
AT1G76820_at 4.56124836395340 4.56638076187085 5.2788553366698 5.05019079556876 5.24224556583895 5.04678581153687 3.60479622130320 3.9599908993014 3.93508897599416 4.53141126065494 4.77727962388152 4.71067425330426 5.10741347386943 5.07243010731876 4.21832337698801 5.27258170804767 5.44269305456616 4.75840596531957 4.54777118398682 0.188885319554902 0.193390982220767 0.192502955952629 0.204565195315581 0.202808342173392 0.195689762474854 0.206604762270681 0.189972115007044 0.201230234419460 0.191474161955981 0.187286850688968 0.193044152972806 0.188558238359722 0.187085070806193 0.202413021859973 0.197922118494378 0.200206365716021 0.196202355761536 0.187656822200456 1 1 + 28842909 28843326 28843123.364 28842467 28843745 + gene protein_coding_gene FALSE TRUE AT1G76820.1 similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor if-2 [Aedes aegypti] (GB:EAT38917.1) 0.781650018831499 8.92593252977026 1.43964240002703e-05 0.0992201542098627 9.64041147266095 9.29284455398402 0.781650018831499 0.0805553360209667
AT4G26080_at 9.67634941586058 9.96687364780173 10.5526219365705 10.5088129407744 10.6809961828848 10.5221640152611 10.0333285154908 10.0180771266277 9.1505889984468 9.36205127937316 9.8716880726922 9.79890634759069 10.2029854465509 9.88536033373092 9.62016946096562 10.0812775588692 10.7427642635220 10.1470581565166 9.34360702395716 0.108929543945460 0.101299437346829 0.103568700282868 0.104453061849654 0.102998105304896 0.106634724276768 0.103895008457864 0.104416007334606 0.114778236818626 0.111505996820741 0.101343114418808 0.102843010478812 0.101960163695806 0.106616020847430 0.100647521413824 0.101452690478473 0.112574034372377 0.104429035537490 0.107627101994862 4 4 - 13220267 13221025 13220631.909 13219970 13222293 - gene protein_coding_gene FALSE TRUE AT4G26080.1 ABI1 (ABA INSENSITIVE 1); calcium ion binding / protein phosphatase type 2C Involved in abscisic acid (ABA) signal transduction. Negative regulator of ABA promotion of stomatal closure. Identical to Protein phosphatase 2C ABI1 (EC 3.1.3.16) (PP2C) (Abscisic acid- insensitive 1) (ABI1) [Arabidopsis Thaliana] (GB:P49597;GB:Q43717;GB:Q94C87); similar to ABI2 (ABA INSENSITIVE 2), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT5G57050.1); similar to Os05g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056498.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:AAT39223.1); similar to Os01g0583100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043415.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.700426015111609 8.91517412720327 1.45302698400515e-05 0.100128089467795 9.63435476369655 19.9094989588159 0.700426015111609 0.0578592474874277
AT4G15090_at 5.15296036805216 5.25179535945094 5.4381260603012 5.31472798465211 6.46811008756551 6.39506345314745 5.21814419808967 5.23638173846269 5.14511940136685 4.73439635100903 5.29963512984821 5.62556195774203 5.7618545493447 5.19631341517826 5.62821086205781 5.69755198270541 5.41591384606611 5.26001895810477 4.85893395741574 0.231472520334614 0.225651120781345 0.225967920442462 0.229550060991453 0.230271523722639 0.229795746436117 0.231632978688288 0.230452642970524 0.230329824336075 0.226087399888916 0.226702527619465 0.230683486011105 0.225651120781345 0.232129998142082 0.231643448046974 0.226345598620975 0.225651120781345 0.228560518463426 0.228107457882467 4 4|0 +|/ 8616755 8617827 8617479.1 8614063 8618142 + gene protein_coding_gene FALSE TRUE AT4G15090.1 FAR1 (FAR-RED IMPAIRED RESPONSE 1); zinc ion binding Encodes a nuclear localized protein involved in far red light response signaling. Loss of function mutants are defective in far red light responses. Interacts with homologous gene FHY3. similar to FHY3 (far-red elongated hypocotyls 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G22170.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.631001249051536 8.90981135732307 1.45975028062929e-05 0.100576794335358 9.63133142962119 10.7586382349959 0.631001249051536 0.0303037737306224
AT4G32690_at 4.9218598810545 5.07763561097446 5.81877797239669 5.66457992475183 5.37122815536447 5.31831820296464 5.69289491044235 5.56046226038226 3.87211268574742 4.67261655471313 5.26273167578326 5.09227134131793 4.94547387736245 5.2170184809104 5.18268569279045 5.21025610403676 5.66243656121901 5.6400955633108 3.99316678037672 0.186622490318809 0.189794969780813 0.202995113589462 0.2001174411886 0.188302677495524 0.194474986583414 0.192592620691152 0.197641110937539 0.205890475009344 0.186920902601055 0.187496038718885 0.191211958184486 0.185388833864037 0.190421747497859 0.188645029419361 0.185388833864037 0.194009517212680 0.187744304018550 0.200707297718788 4 4|0 +|/ 15765509 15766548 15765985.778 15765407 15767095 + gene protein_coding_gene FALSE TRUE AT4G32690.1 GLB3 (2-on-2 hemoglobin like gene 3) Encodes a hemoglobin (Hb) with a central domain similar to the 'truncated Hbs of bacteria, protozoa and fungi. The 3D structure of these types of Hbs is a 2-on-2 arrangement of alpha-helices as opposed to the 3-on-3 arrangement of the standard globin fold. This type of Hb is not found in animals or yeast. similar to 2-on-2 hemoglobin [Datisca glomerata] (GB:CAD33536.1); contains InterPro domain Globin, bacterial type; (InterPro:IPR001486); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Globin-related; (InterPro:IPR012292) 0.663667693317484 8.90565643240084 1.46498300299720e-05 0.100922679076477 9.62898709706633 10.1561795326433 0.663667693317484 0.0452533762735705
AT2G02950_at 7.72571559358293 8.24363465183198 5.7923878644855 6.26087124641871 7.36546229816826 7.62596404477507 8.21605795437793 8.11345787782308 7.5972520523461 8.03384723487311 7.15847096877778 7.54482120276251 7.24759709853371 7.07435677992867 6.89743366065148 7.59791659062291 6.76926011478796 6.21981394238571 7.61396199475672 0.218090277517144 0.216929898826598 0.220532095202187 0.218100714153703 0.220544174789440 0.222683048742949 0.22233362736618 0.215980250738158 0.226673279112714 0.215980250738158 0.218596794085372 0.225750194800227 0.217227843275042 0.225958113721697 0.220622318362776 0.215980250738158 0.235664639286801 0.236460120782878 0.218833366266773 2 2 - 855155 855678 855405.909 854946 856537 - gene protein_coding_gene FALSE TRUE AT2G02950.1 PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) Encodes a basic soluble protein which can independently bind to either PHYA or PHYB, regardless of whether the phytochromes are in the Pr or Pfr state. PKS1 can be phosphorylated by oat phyA in vitro in a light regulated manner. It is postulated to be a negative regulator of phyB signalling. Identical to Phytochrome kinase substrate 1 (PKS1) [Arabidopsis Thaliana] (GB:Q9SWI1;GB:O80610); similar to PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) [Arabidopsis thaliana] (TAIR:AT1G14280.1); similar to putative phytochrome kinase substrate 1, putative [Medicago truncatula] (GB:ABE90777.1) -0.999095060897196 -8.88227974943637 1.49481380949720e-05 0.102962775198167 9.61576567711657 14.8239752191654 -0.999095060897196 0.130206214709465
AT1G78510_at 7.65233030236371 7.54472951614617 7.53235852352158 7.70080668551429 7.25704578761608 7.08635785660996 8.88144454632308 8.50936608470982 8.18095392547495 8.26660348246235 7.33596279221698 7.13630019253365 7.45085555649032 7.52228518573797 6.80624754325905 8.0530210433993 7.80186898804175 7.13277223917376 8.13316774232677 0.177356914142504 0.182912949113464 0.178007198100400 0.174430075398258 0.178041911434827 0.189773953454281 0.178919581546730 0.187739246744123 0.178448219843257 0.171007307536477 0.184349929945165 0.174319761305679 0.170766947918335 0.170906183353699 0.175239973630401 0.169894219285685 0.177852983192924 0.183089815727322 0.17404627732215 1 1 - 29540337 29540792 29540595.909 29540178 29542310 - gene protein_coding_gene FALSE TRUE AT1G78510.1|AT1G78510.2 solanesyl diphosphate synthase (SPS) similar to SPS2 (Solanesyl diphosphate synthase 2), dimethylallyltranstransferase [Arabidopsis thaliana] (TAIR:AT1G17050.1); similar to solanesyl diphosphate synthase [Hevea brasiliensis] (GB:ABD92707.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.770743128275819 -8.87725805689563 1.50130939062375e-05 0.103395177732258 9.61291848438753 15.5697995341979 -0.770743128275819 0.078835747536172
AT1G19600_at 6.86479291639759 6.98539146446875 5.99954301407831 5.94042129935443 6.98013890213439 6.63381289021085 6.85739243878209 6.80107763361172 7.08949811637006 7.12087874941027 6.20813568354246 6.45812686594372 6.36945844300575 6.59279913526495 6.54224428331433 6.35291619583113 6.02675792755565 5.9199013049186 7.57326069167121 0.214165618985092 0.216066222263241 0.212493366714462 0.201226053904707 0.204395346621508 0.210726934058529 0.192242921541162 0.205115250214025 0.214496373631987 0.199234104196236 0.206304729262183 0.191952063185338 0.197074886569767 0.200125078965859 0.21786627324766 0.190507880556598 0.209043578735770 0.210230912228041 0.201066919598635 1 1|0 +|/ 6780048 6780853 6780500.1 6778979 6781164 + gene protein_coding_gene FALSE TRUE AT1G19600.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G27600.1); similar to putative ribokinase [Triticum tur (GB:AAR28761.1); contains InterPro domain PfkB; (InterPro:IPR011611) -0.720552313049487 -8.87516032294516 1.50403207334427e-05 0.103567648570486 9.61172837769124 13.4178238194161 -0.720552313049487 0.0650170887752294
AT1G14380_at 7.68503318293773 7.5754293203959 7.6510508283431 8.07686707526688 9.45134058015347 9.05876003208282 7.50693407538518 7.18248946723885 8.7614515900661 7.9611319493913 9.5937718805033 8.86990895775422 8.80735151104938 9.27874871332765 9.1401167492769 9.05944022208074 8.4489475898934 8.97529725928915 7.97061912649517 0.153548884073367 0.152295151131015 0.160665991976334 0.154920158548999 0.153184314053906 0.150792599707252 0.151041404805682 0.159869728413123 0.14947509610001 0.153411746587194 0.147143430674651 0.147143430674651 0.148328760666842 0.148957409369864 0.147143430674651 0.147143430674651 0.151143888887191 0.156235483860120 0.147143430674651 1 1 - 4918418 4918874 4918603.091 4918005 4921591 - gene protein_coding_gene FALSE TRUE AT1G14380.1|AT1G14380.2|AT1G14380.3 IQD28; calmodulin binding similar to IQD29 (IQ-domain 29), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G02790.1); similar to IQ calmodulin-binding re (GB:ABE84487.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.931331711275738 8.86580825157239 1.51623701577909e-05 0.104392918536390 9.60641738599511 16.6498707780827 0.931331711275738 0.116438435349512
AT2G41410_at 10.2495074519216 10.2968921360520 11.7140335006254 11.571600879787 11.5077389435351 11.0897599685538 11.3843679621889 11.1052692553961 9.43535672069421 9.49771463281006 10.0450098689669 9.89180844556144 10.4392315242798 10.0700584926108 10.0034379843895 10.0998709607004 10.4974475311475 10.0614042778414 8.72682963951866 0.122322344676291 0.121962057280794 0.130439088936188 0.129457278730481 0.127421483389032 0.131593645350815 0.131105553819640 0.125054709940186 0.136371304043821 0.124904566352305 0.119913223190928 0.121143596547100 0.119655784221193 0.120569545296963 0.1240305529796 0.117884957572481 0.118416241067210 0.126446256745143 0.131743246422445 2 2 - 17269181 17269735 17269488.182 17268806 17269962 - gene protein_coding_gene FALSE TRUE AT2G41410.1 calmodulin, putative Identical to Calmodulin-like protein 1 [Arabidopsis Thaliana] (GB:P30188;GB:Q8LFR1;GB:Q9SLG7); similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT3G10190.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE94192.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.81517037987429 8.8405702312419 1.54972508758177e-05 0.106683075029129 9.59204166590698 20.7941465789383 0.81517037987429 0.0907728825236114
AT2G32430_at 6.66471429901999 6.82217039284943 6.09287321680314 5.94695244084487 6.14586644326705 5.8914896428869 7.3808111510364 7.14573869044309 5.71176233308256 5.58897529727001 5.11780737332174 5.28780356605039 5.34316471583790 5.15755086735923 4.39528524421426 5.92579567070061 4.95834765915963 5.11450771177523 5.64881866926481 0.193240290097514 0.182394282412854 0.185046331745197 0.185826126629249 0.18130239467838 0.186354674185863 0.187649839034249 0.183142493537283 0.19747149869418 0.182797245049897 0.18130239467838 0.18130239467838 0.184605541965124 0.181680774736663 0.186592629063014 0.183213978438946 0.192944695420025 0.185069743956556 0.185627679838039 2 2|0 +|/ 13780392 13781082 13780681 13778373 13781579 + gene protein_coding_gene FALSE TRUE AT2G32430.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.2); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.73569122310341 -8.82696608311594 1.56811557032709e-05 0.107933394705614 9.5842664463923 11.9175195101063 -0.73569122310341 0.0705188545151091
AT1G35670_at 6.25455018492109 6.24557710678565 5.54960090492389 5.4489314343068 5.95486194402377 5.90711190408285 6.75924494216957 6.97921207886987 7.0477191534223 6.24281538857148 6.66755230818519 6.13607657524731 6.14250789468011 6.4085699419787 6.10643775360135 5.87459229678273 5.96834889670878 5.33630702395485 6.32247481860755 0.202243666978193 0.198996932918031 0.204717186374258 0.205254976746946 0.203760609884158 0.201566484592620 0.209627843296059 0.201511148264606 0.207323870730715 0.203840997411658 0.200289808376998 0.205740043305562 0.21092052603787 0.209824219436787 0.198675426305707 0.201769846304424 0.20542331509263 0.214727423910403 0.202162693242085 1 1|0 +|/ 13208443 13209221 13208904.667 13206593 13209464 + gene protein_coding_gene FALSE TRUE AT1G35670.1 ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2); calcium- and calmodulin-dependent protein kinase/ kinase Encodes a Ca(2+)-dependent, calmodulin-independent protein kinase that is rapidly induced by drought and high-salt stress but not by low-temperature stress or heat stress. similar to CPK4 (calcium-dependent protein kinase 4), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G09570.1); similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CDPK9 (CALCIUM-DEPENDENT PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G23580.1); similar to calmodulin-like domain protein kinase isoenzyme beta [Glycine max] (GB:AAB80692.1); similar to seed calcium dependent protein kinase b [Glycine max] (GB:AAP03013.1); similar to calcium-dependent protein kinase [Vitis labrusca x Vitis vinifera] (GB:AAR28766.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.651070115913475 -8.82199044927195 1.57490205021420e-05 0.108384759095742 9.58141810746998 12.4462457491402 -0.651070115913475 0.0426994510741951
AT3G22150_at 5.3465828253453 5.91885014552148 4.31611935953091 4.19347797700366 5.70210444268327 5.49198334161218 6.10531890511424 6.37979082125267 5.69252161832881 6.41971504167828 4.49070978549141 5.92206261382044 5.15635015895674 5.54216262728664 5.86873510665394 6.0803086778342 5.82540560435742 4.91487658013035 6.86608133492873 0.218560642995116 0.209432510526302 0.218311270136270 0.214435703941418 0.214318734642902 0.222220690202566 0.219032036775598 0.214897804454476 0.233794620761198 0.209432510526302 0.209812861933115 0.210335279738048 0.209835883970247 0.216389780532857 0.217851200436631 0.210484991224747 0.218504396949060 0.213426669442022 0.211908280146564 3 3 + 7814923 7815452 7815187.636 7812951 7815935 + gene protein_coding_gene FALSE TRUE AT3G22150.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to B0403H10-OSIGBa0105A11.20 [Oryza sativa (indica cultivar-group)] (GB:CAH67868.1); similar to Os04g0602600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053774.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.931371999048232 -8.81338119215389 1.58672156829992e-05 0.109182311114717 9.57648384387542 11.3323696735721 -0.931371999048232 0.117628362947956
AT3G13340_at 7.51064425565531 7.64035454356966 7.80576938454872 7.7806633715953 8.44111045979918 8.34118984597849 7.2828346066181 7.47627595203064 7.13945019410103 7.00690046981028 7.58317773309016 7.70801870702141 7.6614111554118 7.86205386534485 7.44910603139028 7.91987531995293 7.81970035762363 7.65479756856427 6.90439277815858 0.175362576764456 0.165232216307166 0.177135977630041 0.166435296619697 0.178540149805067 0.176971965344170 0.180145548835355 0.164717075932480 0.179149652860726 0.178085745021714 0.165268747072008 0.165753288322238 0.168015003868388 0.168565821982319 0.175347889611568 0.168592298752790 0.185600533515597 0.166556144627192 0.177895230656943 3 3|0 +|/ 4333789 4334586 4334324.556 4331763 4335080 + gene protein_coding_gene FALSE TRUE AT3G13340.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G55680.1); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G56190.2); similar to Os08g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062140.1); similar to Os02g0721600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047961.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE85775.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.652504518810974 8.79573091306945 1.61126181908579e-05 0.110854813153102 9.56634470783825 15.1469463389694 0.652504518810974 0.0440724920518451
AT4G14800_at 9.69266594549743 9.55426770730421 10.2249405248724 10.1942591284127 9.92375286188877 9.7480860930201 9.28226594026342 9.22230620887232 8.89338314815971 8.78403362298196 9.35979148046744 9.29098425097168 9.17788354462709 9.32279364525171 9.6407932707846 9.16191956546491 9.34047337760268 9.47043217749373 8.2560776923425 0.0830466113533956 0.0821630097017772 0.0831891235176729 0.0806772146754013 0.0844283181666352 0.084363261614016 0.0850506317511237 0.0852110546996373 0.101629506242797 0.0907695926368268 0.081962926207962 0.0804427316932171 0.0836563223688426 0.0859438211630013 0.081618686516541 0.0804427316932171 0.08586930458977 0.0843947021907526 0.101232047887888 4 4 + 8500436 8501955 8501163.364 8500282 8502224 + gene protein_coding_gene FALSE TRUE AT4G14800.1 PBD2 (20S PROTEASOME BETA SUBUNIT 2); peptidase Encodes 20S proteasome beta subunit PBD2 (PBD2). Identical to Proteasome subunit beta type 2-B (EC 3.4.25.1) (Proteasome subunit beta type 4) (20S proteasome beta subunit D-2) (Proteasome component GA) (PBD2) [Arabidopsis Thaliana] (GB:O24633); similar to PBD1 (PROTEASOME SUBUNIT PRGB), peptidase [Arabidopsis thaliana] (TAIR:AT3G22630.1); similar to 20S proteasome beta 4 subunit [Triticum aestivum] (GB:AAU82106.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.643009480576207 8.78590101509728 1.62511098598934e-05 0.111791384726206 9.5606844369747 18.7253840855553 0.643009480576207 0.0404183249299516
AT1G49470_at 8.6958274843389 8.88909953032563 9.4503075808955 9.69661461644691 9.81402547287706 9.46030118684754 8.86258906589036 9.01255037023212 7.76375761553203 8.23608934910355 8.77155808572614 8.42331938533731 8.74460516808944 8.57861784186423 8.58491122021738 9.02899249655159 9.1363872318637 8.79429702440581 7.76292105365328 0.191484326273969 0.191521410281778 0.201790406671702 0.200783261177669 0.203282206861091 0.198455582310626 0.188484634111827 0.192118790823898 0.224057698957523 0.205211864856436 0.195498668826199 0.194344729658918 0.193350826740598 0.188224604484135 0.200917163015673 0.193526662670573 0.190025400876608 0.189341774332948 0.218617721370948 1 1 + 18314531 18315105 18314840 18314162 18315302 + gene protein_coding_gene FALSE TRUE AT1G49470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55230.1); similar to Os08g0462900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061988.1); similar to Os09g0444900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063301.1); similar to plant viral-response family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38318.1); contains InterPro domain Protein of unknown function DUF716; (InterPro:IPR006904) 0.788604492782 8.77229593560706 1.64449696066138e-05 0.113108500954290 9.55283433001471 17.5745437782417 0.788604492782 0.0857678368044427
AT2G44500_at 6.32010336038978 6.6693894712504 7.74567606095065 7.7367834212177 6.74806534090785 6.70359642071495 5.40535340245947 5.92124548932718 6.36991024134668 4.66478293997601 7.65826839418743 5.38247182225138 6.90586075592594 6.92315523005111 4.37368851638597 6.33107590926424 6.80423007371212 6.50131653539582 6.20802184759641 0.242686752641697 0.244414189467457 0.260228880841845 0.255369822682485 0.240045637104259 0.256151551231299 0.246627502094226 0.24119054694234 0.258562770086689 0.245166070544634 0.248609014112054 0.243721572397034 0.255105688851717 0.276137917096980 0.250606492668028 0.242270558590645 0.26000286429951 0.24693081831291 0.245602832731159 2 2 + 18382838 18383392 18383137.636 18381368 18383866 + gene protein_coding_gene FALSE TRUE AT2G44500.1|AT2G44500.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07900.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); similar to H+-transporting two-sector ATPase, delta (OSCP) subunit; Hypothetical plant protein [Medicago truncatula] (GB:ABE83885.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07900.1); similar to Plant protein family, putative [Medicago truncatula] (GB:ABE79402.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.883472054215734 8.77204696334807 1.6448541013962e-05 0.113116616553017 9.55269050006021 12.7100666613788 0.883472054215734 0.108100586827613
AT3G10080_at 5.63744434681451 6.43241974019969 3.19740437706481 3.15114593665641 3.59652201820318 3.78556737030344 6.99230614429682 7.71508916179268 6.28844049561448 6.123052193817 6.71148326128092 7.908509373783 5.97365006380072 7.0352280559644 8.04305775879395 6.70115205909413 6.17008654635533 6.9463924437982 6.34302773246579 0.219985696691259 0.215815863402258 0.244579715942737 0.230524563431995 0.214460278073973 0.235099056579338 0.212709867324415 0.216534978142564 0.216856755591334 0.216398218268968 0.216134852186987 0.211430882047769 0.211430882047769 0.218895969019405 0.219807128989095 0.216640028320866 0.213945926916596 0.216008089320109 0.215555486824552 3 3 - 3107488 3108049 3107787.182 3107280 3108182 - gene protein_coding_gene FALSE TRUE AT3G10080.1 germin-like protein, putative Identical to Germin-like protein subfamily 3 member 2 precursor [Arabidopsis Thaliana] (GB:Q9SR72); similar to germin-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G18980.1); similar to Os03g0804700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051622.1); similar to germin-like protein [Physcomitrella patens subsp. patens] (GB:BAD86499.1); similar to Os02g0532500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047025.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) -1.28848339232961 -8.77051687740478 1.64705083558634e-05 0.113251215454916 9.55180644054134 11.6573382632454 -1.28848339232961 0.18896104565542
AT2G28900_at 11.7846223200316 11.5917834139719 10.7038120997649 10.5564504623216 11.6138779546112 11.3495388205873 10.0891196733381 9.7675731135192 9.9162342441298 9.91933229727394 11.3741431090193 11.2576118019669 10.9406160912539 11.1704024194270 11.3905977532408 10.6134434637590 10.6365553847191 11.2630277446714 9.48762951832847 0.089358885434719 0.0900674447302193 0.0934889917780687 0.0890637671039998 0.0905094010855562 0.0926914220573992 0.0900700424731551 0.0959228732917014 0.107170467259887 0.098995701216486 0.0890637671039998 0.0900504519636635 0.0909315116601634 0.0907736219490351 0.0926834846360802 0.0890637671039998 0.0918268296543431 0.0931939652325504 0.0994395861069264 2 2|0 -|/ 12421544 12422502 12422039.9 12421191 12422655 - gene protein_coding_gene FALSE TRUE AT2G28900.1 OEP16 (OUTER ENVELOPE PROTEIN 16); protein translocase Encodes AtOEP16, a 16-KDa plastid outer membrane protein involved in plastid import of protochlorophyllide oxidoreductase A. Predominantly expressed in leaves and is also inducible by cold treatment. similar to ATOEP16-2/ATOEP16-S, protein translocase [Arabidopsis thaliana] (TAIR:AT4G16160.1); similar to core protein [Pisum sativum] (GB:CAA97910.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 0.777023119267931 8.74799834316138 1.67975922064529e-05 0.115483446419364 9.53876829345942 21.3596964360605 0.777023119267931 0.0833846373359943
AT1G25560_at 8.40594267465714 8.63760686273441 7.91744806006432 8.07149029303365 7.87755027014609 8.0145834003024 4.48214627016749 5.30670103655405 6.08113313882973 5.66328486455978 6.58540947224088 6.94059922970165 6.56925167787006 7.05975184199531 6.36835397455937 7.10945768316789 6.63682165576925 5.87257800430957 5.40781696255329 0.204465834292543 0.208502053946632 0.201618532323938 0.201800255015540 0.201183988051822 0.208143560643663 0.225760971163617 0.209727647457849 0.211193321680577 0.211376560847734 0.198501362319038 0.198000746820538 0.204806231230413 0.206997854744419 0.202326426399056 0.198000746820538 0.216100169876085 0.204085552509777 0.205368206681113 1 1 - 8982031 8982423 8982235.091 8981664 8983028 - gene protein_coding_gene FALSE TRUE AT1G25560.1 AP2 domain-containing transcription factor, putative similar to RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G68840.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 1.09376754099791 8.74408002551757 1.68552376762631e-05 0.115862903786632 9.53649437204654 13.5192784073405 1.09376754099791 0.152451822920539
AT2G25250_at 6.72708057411967 6.51960989540058 6.60868773472303 6.93697316099053 7.56948496718292 7.25112810496044 6.44843049717653 6.44169249812289 6.37748908186937 6.20264851127574 7.78524248333312 7.43215105839633 7.43332245813019 7.4752699229828 7.06138517708445 7.39663308483147 7.12526605958623 7.25983314596241 6.46317655071466 0.172173438218448 0.177886623408301 0.178930379530041 0.188516221736624 0.169471222520750 0.174715463757068 0.174332451978458 0.177154171446039 0.202255598897259 0.174713243668074 0.174909422286146 0.167909092901133 0.169102722598679 0.180442049365474 0.174022457394839 0.172335936557184 0.182327019343886 0.178188363960988 0.171947088890980 2 2 + 10761056 10761449 10761275 10760914 10761792 + gene protein_coding_gene FALSE TRUE AT2G25250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32020.1) 0.790365834130552 8.74127126439326 1.68966943995229e-05 0.116130980607921 9.53486340495042 13.6723405816221 0.790365834130552 0.0869092678789
AT3G23030_at 9.8375787190991 9.82359027337283 10.5216409847923 10.4591466672497 10.7773309798078 10.7693410505320 9.8997913118533 9.95637060596238 9.9849869776392 9.5612660750269 10.6355715284423 10.2376339157561 10.2511710782235 10.2349098999182 10.7868129323444 10.2170254666759 10.4852706658574 10.1643527370912 10.2530003154428 0.107122406413118 0.107968185393447 0.108775812804073 0.107415331080108 0.105212025747092 0.103907107338098 0.105211297337386 0.109545573183216 0.119982650470707 0.111660696789629 0.109056634383359 0.103907107338098 0.107316247635341 0.108972327649806 0.109738216561921 0.103907107338098 0.107032563931568 0.107599428461002 0.108783439507440 3 3|0 -|/ 8181096 8181657 8181357.2 8180775 8181807 - gene protein_coding_gene FALSE TRUE AT3G23030.1 IAA2 (indoleacetic acid-induced protein 2); transcription factor auxin inducible gene expressed in the nucleus Identical to Auxin-responsive protein IAA2 (Indoleacetic acid-induced protein 2) (IAA2) [Arabidopsis Thaliana] (GB:P49678;GB:O22596); similar to IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14560.1); similar to auxin-responsive protein (GB:AAA16569.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.598020632512937 8.73853663512446 1.69371654770755e-05 0.116392201158463 9.53327471681032 20.4104378161211 0.598020632512937 0.0148527605154230
AT1G77690_at 4.33297007335258 4.51291239829273 3.92575617142203 4.62045101462643 6.39257652761241 5.39355663067684 5.26533587564417 5.54242901148194 2.15017882359502 2.93111519686807 5.53340931402098 6.80905188013574 6.85432959846154 6.30902914405007 5.23299285420989 5.43251548972591 5.157918168499 5.49059593591876 4.33251689262832 0.261397403411314 0.250596657884886 0.254589451042210 0.248857804865818 0.255523124288037 0.261142195225769 0.257689484802738 0.252701940672548 0.272148555637183 0.256754407445511 0.251999179067337 0.248857804865818 0.253386031446511 0.250581509506001 0.254674787230191 0.250210912829732 0.255512342982819 0.256258840670009 0.256097625261433 1 1 - 29206167 29206853 29206603 29205835 29208234 - gene protein_coding_gene FALSE TRUE AT1G77690.1 amino acid permease, putative Identical to Auxin transporter-like protein 3 (AUX1-like protein 3) (LAX3) [Arabidopsis Thaliana] (GB:Q9CA25); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT5G01240.1); similar to AUX1 (AUXIN RESISTANT 1), amino acid permease/ transporter [Arabidopsis thaliana] (TAIR:AT2G38120.1); similar to Auxin transporter-like protein 5 (AUX1-like protein 5) (MtLAX5) (GB:Q8L883); similar to Auxin transporter-like protein 3 (AUX1-like protein 3) (MtLAX3) (GB:Q9FEL6); similar to auxin influx carrier [Lupinus albus] (GB:CAJ84440.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 1.44210828674442 8.73566972368186 1.69797095717731e-05 0.116667584467653 9.53160836580519 9.49345709746775 1.44210828674442 0.218200008280547
AT2G29995_at 8.43271882051526 8.63785035636689 8.70474854027507 8.97199125010947 9.32733296256852 9.23205845077197 8.5239834621688 8.91750727374203 7.02052981007461 7.16044567961608 8.3199133110209 7.89824409964774 8.65418266624907 8.74418915107495 7.60705593385803 7.9318625376677 8.8099530400929 8.01651960342878 7.01374744945656 0.146589324588286 0.141089336540294 0.143820619016509 0.142423901258639 0.147413344355464 0.14529111790505 0.144424013011186 0.144743107787698 0.157839245211298 0.150861155696274 0.147983870165199 0.144916446290627 0.141089336540294 0.149055349101541 0.156238840195749 0.144906459836700 0.146378833451005 0.148961661083246 0.148981220668508 2 2 - 12804215 12806386 12804829.182 12803984 12806496 - gene protein_coding_gene FALSE TRUE AT2G29995.1 unknown protein 0.806925109615301 8.73430988469227 1.69999305415102e-05 0.116789522820175 9.5308176877575 16.4998477341960 0.806925109615301 0.0911516609387562
AT1G75710_at 3.77305459815851 4.17312313737153 3.15876034341740 3.14295717319652 3.88295982524958 3.93972587718811 5.56407788471935 5.70683991005537 5.90064207893934 5.37375635224895 5.89241930003871 5.84831339847767 5.59924905930229 5.54622121197501 5.68672376979436 5.27889205864691 4.39430433597799 4.92463201500239 5.53836595913973 0.212659583132467 0.210757451017501 0.231903666345878 0.218441849975388 0.214377896083148 0.227471429901818 0.211581987687353 0.218779325195089 0.223859695397741 0.215557730578637 0.212116385987400 0.214424923449689 0.218020295358390 0.210737324080601 0.215903494270554 0.213441319196201 0.230381112748452 0.225208428233986 0.210737324080601 1 1 + 28434247 28434738 28434489.727 28432367 28434910 + gene protein_coding_gene FALSE TRUE AT1G75710.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G27240.1); similar to Os04g0115500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052042.1); similar to H0814G11.16 [Oryza sativa (indica cultivar-group)] (GB:CAJ86349.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.740541740468688 -8.72664016659797 1.71144807734031e-05 0.117559368432506 9.52635462056445 9.66798693888351 -0.740541740468688 0.0742136117179184
AT2G31840_at 7.64446650648231 7.66017063234704 6.42206149277039 6.74811726475503 7.55129611282088 6.77852204776516 8.42899980216849 7.9965364066287 8.06349007251882 8.36730682958954 6.42415774425512 7.14120522209921 6.75562973703813 7.18860515495636 7.58574352345223 7.53717886321402 7.53685638993475 6.80673679119885 8.64108036859836 0.191994714427038 0.191414886180206 0.207449957621174 0.202099555646982 0.194263895254725 0.206010664585894 0.194501064376335 0.191414886180206 0.201771167414900 0.193588297571308 0.199352629391980 0.196713631036912 0.196025194574241 0.195105283460934 0.197417731777200 0.193784501852697 0.195260963508619 0.204728845773661 0.199198542717360 2 2|0 -|/ 13545112 13546097 13545567.1 13544989 13546835 - gene protein_coding_gene FALSE TRUE AT2G31840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28590.1); similar to Os05g0417200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055561.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77387.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -1.14641117633955 -8.72041424793114 1.72080960384863e-05 0.118185203592324 9.52272732033535 15.143424584136 -1.14641117633955 0.163329440028743
AT1G20620_at 13.7460789665265 13.7611981961409 13.8574018857277 13.7354431279121 13.7918705370475 13.9342571921836 12.6049887325642 12.7999078464698 12.2753957428568 12.6337283706905 13.1685164672101 13.0957759329037 13.2750233394146 13.0470620402571 13.2424378879394 12.8733499120154 13.2590017256948 13.8238830485225 12.6441199484756 0.0705788714452929 0.0689198164475847 0.0711027487752146 0.071900826063739 0.0695047629519536 0.070207041410952 0.0701421036062431 0.0709463571275043 0.0759766126634502 0.0707510954677233 0.0698083971479292 0.0682027675983753 0.068958711402125 0.0740557345831089 0.0690341119653025 0.0688572571479971 0.0704483534243711 0.067566273431262 0.0700960276826182 1 1|0 +|/ 7145311 7145997 7145499.8 7143057 7146530 + gene protein_coding_gene FALSE TRUE AT1G20620.1|AT1G20620.2|AT1G20620.4|AT1G20620.5 CAT3 (CATALASE 3); catalase Catalase, catalyzes the breakdown of hydrogen peroxide (H2O2) into water and oxygen. Identical to Catalase-3 (EC 1.11.1.6) (CAT3) [Arabidopsis Thaliana] (GB:Q42547;GB:Q93VY9;GB:Q9LDS9); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT2 (CATALASE 2), catalase [Arabidopsis thaliana] (TAIR:AT4G35090.1); similar to catalase [Brassica napus] (GB:AAB53101.2); similar to catalase 3 [Raphanus sativus] (GB:AAD30292.1); similar to catalase 2 [Raphanus sativus] (GB:AAD30291.2); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226)|Identical to Catalase-3 (EC 1.11.1.6) (CAT3) [Arabidopsis Thaliana] (GB:Q42547;GB:Q93VY9;GB:Q9LDS9); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT2 (CATALASE 2), catalase [Arabidopsis thaliana] (TAIR:AT4G35090.2); similar to catalase [Brassica napus] (GB:AAB53101.2); similar to catalase 3 [Raphanus sativus] (GB:AAD30292.1); similar to catalase 2 [Raphanus sativus] (GB:AAD30291.2); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226) 0.653541511931385 8.71412842008137 1.73031877899681e-05 0.118820990553711 9.51906111943974 26.399332968031 0.653541511931385 0.0468751229927351
AT4G36760_at 8.38197711952448 8.42040349765274 8.7857645765606 8.82179503612841 9.03037589074264 8.65190160705505 7.60902919641654 7.486580525052 7.56339139166448 7.22959132335304 8.01130049148804 7.24711613495326 8.02391936251093 7.81606238972942 7.34738936506927 7.67473741578577 7.82532423564374 7.92072778821914 6.62791082140158 0.1740485056362 0.172583353869537 0.180775199970661 0.176477807334931 0.173267431360082 0.179559003284480 0.170225959454912 0.173508214189828 0.174289973230874 0.163347506043923 0.165912853421621 0.168066245887037 0.161956636185199 0.165754975612741 0.174396322802602 0.161470833903849 0.188709090550557 0.165380347056701 0.18615259564189 4 0|4 /|+ 17329216 17329959 17329501.625 17326622 17330214 + gene protein_coding_gene FALSE TRUE AT4G36760.1|AT4G36760.2 ATAPP1 (aminopeptidase P1) Arabidopsis aminopeptidase P1 similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94110.1); similar to Xaa-Pro aminopeptidase 1 [Solanum lycopersicum] (GB:CAC59823.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24B, X-Pro dipeptidase; (InterPro:IPR001131)|similar to aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G05350.1); similar to Xaa-Pro aminopeptidase 2 [Solanum lycopersicum] (GB:CAC59824.1); similar to metallopeptidase family M24 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94110.1); similar to Xaa-Pro aminopeptidase 1 [Solanum lycopersicum] (GB:CAC59823.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994) 0.720492997706073 8.68969741147885 1.76783446296443e-05 0.121379514227138 9.50477353764145 15.8352884278405 0.720492997706073 0.0694402709556577
AT1G67910_at 5.53408032912175 5.75387927660995 4.66864503279401 4.88147433338065 5.5551694870609 5.35141710319218 6.38376773023526 6.28894361160187 6.75278999840884 6.35325961741832 6.55520927712686 5.82746803796826 5.74130937449405 6.3040739930221 5.50997601079037 5.93690213053502 5.51094949682472 6.19894806824066 6.3567390650522 0.186668149209010 0.178155067764159 0.187726856261748 0.187962626349406 0.183045052475483 0.191987100357136 0.180566540681457 0.178596989963085 0.193783267816342 0.181101362282555 0.181673882484494 0.179116271954462 0.178499192108556 0.185569988053490 0.192301437132899 0.181388919407630 0.198009621545044 0.183333602958030 0.178859247756405 1 1 - 25475222 25475395 25475300.091 25474972 25476008 - gene protein_coding_gene FALSE TRUE AT1G67910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24577.1); similar to hypothetical protein [Plantago major] (GB:CAH59418.1) -0.707741463059903 -8.68956482381958 1.7680405033923e-05 0.121379514227138 9.50469583236554 11.7700225007921 -0.707741463059903 0.0656957389177192
AT3G62870_at 11.0667685925196 11.0612831237654 10.5412327478160 10.5398768772251 10.6530178724202 10.6184819962076 11.3087023128013 11.4240909189824 11.0424924225441 11.0215148878621 10.4052683349541 10.6525345432255 10.3648834450492 10.3018628655757 10.8598446062345 10.1824057228045 10.2339664710677 10.3751229466925 10.9270608670621 0.0678299474716554 0.0680951893407637 0.0695819567666965 0.072538331535605 0.0699351048531267 0.0717994703573783 0.0714126782738688 0.0682385764346627 0.0732293691717427 0.0698230599523598 0.0692636445006294 0.0677766146028015 0.0677766146028015 0.0743167892804896 0.069318015301049 0.0691280794236348 0.0737785124567931 0.0711714340260805 0.0682648668952374 3 3|0 -|/ 23253847 23254664 23254251.667 23253640 23255328 - gene protein_coding_gene FALSE TRUE AT3G62870.1 60S ribosomal protein L7A (RPL7aB) Identical to 60S ribosomal protein L7a-2 (RPL7AB) [Arabidopsis Thaliana] (GB:Q9LZH9); similar to 60S ribosomal protein L7A (RPL7aA) [Arabidopsis thaliana] (TAIR:AT2G47610.1); similar to 60S ribosomal protein L7A-like protein [Solanum tuberosum] (GB:ABB72809.1); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038); contains InterPro domain Ribosomal protein L7A; (InterPro:IPR001921) -0.601047736236131 -8.68838922069434 1.76986854727125e-05 0.121483777084699 9.5040067713274 21.6111862266038 -0.601047736236131 0.0208666798694364
AT1G11870_at 6.05597805574283 5.9038252406114 5.51704348533856 5.1589410072245 5.25786048814669 5.28961639661237 7.04297315534876 6.98517565040065 6.01775090552131 6.06088671067303 5.61263170787954 5.76806887959494 5.59797981795728 5.58800043124594 6.14252836730181 5.89530895383166 6.2577032647806 5.60533476238759 6.06978465572508 0.231733580332082 0.233419727801761 0.228568289913888 0.243369712698604 0.224481239177066 0.249205857897366 0.222458519088005 0.220481215752618 0.232701251857134 0.224120309912068 0.235260939558135 0.228901069681198 0.227561231490012 0.237060334463277 0.234993879389756 0.22402579538542 0.220481215752618 0.220481215752618 0.220481215752618 1 1|0 +|/ 4005747 4006501 4006117.8 4003845 4006738 + gene protein_coding_gene FALSE TRUE AT1G11870.1|AT1G11870.2|AT1G11870.3 AtSRS (OVULE ABORTION 7); serine-tRNA ligase Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. similar to seryl-tRNA synthetase / serine--tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G27470.1); similar to seryl-tRNA synthetase [Zea mays] (GB:CAA73496.1); similar to Os11g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068265.1); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Seryl-tRNA synthetase, class IIa; (InterPro:IPR002317) -0.716076124356384 -8.68406897835019 1.77660445585650e-05 0.121928363805431 9.50147331578884 11.8303859918093 -0.716076124356384 0.0682934426141684
AT4G15490_at 8.91213027016594 8.89880558130452 9.12845603456348 9.2762740751214 9.32462410192364 9.00097225842308 8.95680127101156 9.17319599150865 5.95869982578764 8.5188796556628 8.15031590889189 7.7657660553944 8.8701906148991 8.88048747057302 6.81135721621733 9.38834279424476 9.4803926202959 8.78126207400991 7.289589042289 0.130529348508238 0.132391453182622 0.130945042181685 0.135094502843704 0.132265764499154 0.135871507041895 0.142154194565273 0.134178089183536 0.170378571725239 0.132591882918601 0.142327421223739 0.140621611436982 0.136483413591059 0.143427017522596 0.14438015169207 0.132556818062332 0.135921541380037 0.131672325054531 0.148615381616960 4 4 - 8853018 8853434 8853218.364 8852696 8854543 - gene protein_coding_gene FALSE TRUE AT4G15490.1 UGT84A3; UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. similar to UGT84A2, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase [Arabidopsis thaliana] (TAIR:AT3G21560.1); similar to UGT84A4, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT4G15500.1); similar to UGT84A1, UDP-glycosyltransferase/ sinapate 1-glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G15480.1); similar to hydroxycinnamate glucosyltransferase [Brassica napus] (GB:CAJ77650.1); similar to UDP-glucose:sinapate glucosyltransferase [Brassica napus] (GB:AAF98390.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.728819921039769 8.67749926758799 1.78690209999588e-05 0.122617222101717 9.49761707602706 16.9697760407839 0.728819921039769 0.0721048224238493
AT3G03470_at 10.5820739526758 10.6852902687150 11.933007209767 11.9977558408114 11.6509243369765 11.3665086636657 10.9232957715041 10.9019725788923 9.68249346731193 10.1573420809297 10.0703581637910 8.91449812958556 10.6363287810889 10.4277310302858 9.06959041924832 10.9802692414301 10.8966453850367 10.2643039387313 9.5093822789936 0.0941503814748343 0.0921981303477098 0.0975234502518153 0.0921981303477098 0.0961993720764745 0.0956506670714923 0.0947816814415876 0.0935448982633143 0.111462148613628 0.0948435315171644 0.102763921289807 0.0975803326852203 0.0993692621466974 0.098665915493713 0.106119602742545 0.0921981303477098 0.101609904996653 0.0993916049479418 0.0946674274148749 3 3|0 -|/ 824836 825325 825094.5 824559 826444 - gene protein_coding_gene FALSE TRUE AT3G03470.1 CYP89A9 (cytochrome P450, family 87, subfamily A, polypeptide 9); oxygen binding member of CYP89A similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE86838.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.669141948464836 8.67466475800928 1.79136542700912e-05 0.122905581947096 9.49595193119134 21.2253727004900 0.669141948464836 0.0536728828859554
AT4G19120_at 10.3168573424388 10.5989886641068 9.01019532979264 8.78681013192935 9.81117186049477 9.48348106123623 8.44362197511876 8.52705658391554 8.76211028466026 8.93160879221575 11.0015912576031 11.4422965575113 10.2034684229398 10.6227016699995 11.0929971665239 10.2945006728453 8.90047311350341 10.3130947865267 8.49584277331811 0.096866588885471 0.0935894796468988 0.0963114673667528 0.0968482388527701 0.0993990851900745 0.101847948528863 0.101807497066573 0.0971906428626684 0.114966896131068 0.0992141971794158 0.0935894796468988 0.0935894796468988 0.095270952373722 0.095555561543572 0.095258324435172 0.0935894796468988 0.103685803548668 0.0956337769390123 0.105830803164443 4 4 - 10460691 10461305 10461021.545 10460306 10464185 - gene protein_coding_gene FALSE TRUE AT4G19120.1|AT4G19120.2 ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3) similar to dehydration-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G31850.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Os06g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056546.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.777659980167601 8.6642384560957 1.80788961962530e-05 0.124021227906295 9.4898198633604 18.9791450716273 0.777659980167601 0.0854549507640744
AT3G17640_at 3.88654973702168 4.85369255245686 2.59474892736614 3.34448096728774 3.60984129052447 3.99959313849631 6.8584057408248 7.17080066637038 6.06413076452796 6.68453933951164 6.24519678204465 6.17068848533112 5.49576167310577 5.97344379713431 5.79923114452109 6.03103138180748 5.08384552322577 5.73192241747129 6.70169637433608 0.220818358471575 0.215967006281665 0.21751877832902 0.225388167417939 0.213392408563389 0.219792442411757 0.220682929076658 0.223374905567701 0.220813539893099 0.226591626081108 0.210646298485332 0.212526627546949 0.225129200859883 0.218256615061902 0.213283979936138 0.210646298485332 0.231358954138755 0.216439963079472 0.212445705760781 3 3 + 6033021 6033502 6033288 6032399 6033589 + gene protein_coding_gene FALSE TRUE AT3G17640.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G03440.1); similar to putative leucine-rich repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59431.1); similar to Os05g0406800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055516.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -1.48613071773074 -8.65350577637056 1.82507586865185e-05 0.125181953830831 9.48349593777861 10.6896869492296 -1.48613071773074 0.228730902952990
AT4G33960_at 7.47662589028331 7.43736138836051 7.5516811116355 7.47187022509268 8.2187530660987 8.42181293130644 7.02588680751454 7.60672774123368 7.34306333181175 7.45770209552709 8.86965807226249 8.31782948072212 8.27966990344933 8.441489482694 8.34608898263861 7.85301787281036 8.49759517172192 8.35068366369122 6.68922640284189 0.172224254139793 0.167641095896966 0.167836893119674 0.170966434720064 0.167601411758885 0.167336356693616 0.164640286120918 0.167315654145707 0.168424738221956 0.170245969179071 0.164640286120918 0.164640286120918 0.175549536677924 0.166197857972989 0.168442155077874 0.170053084953275 0.171993519205776 0.169722863684550 0.173144813610686 4 4 + 16277405 16277574 16277474.909 16277371 16277784 + gene protein_coding_gene FALSE TRUE AT4G33960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15830.1) 0.867776172686916 8.638586040242 1.84926815048979e-05 0.12682280976059 9.47468520126887 15.4177572395952 0.867776172686916 0.107589488496724
AT3G53260_at 8.54877974936803 8.97035993829508 8.17078023680987 8.41230150904215 8.0750474855736 8.01401802750127 10.1047247334708 10.2778640462455 10.0594456109114 10.1114459425681 9.95328273673425 10.0048532717575 9.65080359794274 10.0086608600806 9.56454145505691 9.94621185189268 9.4986260390824 9.50623217821757 9.95747788042653 0.105223109811587 0.0994682426317063 0.108904141589521 0.10356795608286 0.104095302623951 0.109512076319494 0.103027334116924 0.102238091882485 0.104121979734398 0.103027938122553 0.102539451348292 0.098653612932144 0.106253838381919 0.102891865729854 0.104008211198085 0.098653612932144 0.114888633810265 0.101722618292556 0.105531194755348 3 3 - 19755240 19755693 19755481.182 19755029 19757758 - gene protein_coding_gene FALSE TRUE AT3G53260.1 PAL2 (phenylalanine ammonia-lyase 2); phenylalanine ammonia-lyase Encodes phenylalanine lyase. Identical to Phenylalanine ammonia-lyase 2 (EC 4.3.1.5) (PAL2) [Arabidopsis Thaliana] (GB:P45724;GB:Q53ZM9;GB:Q8RWP4;GB:Q94KC9;GB:Q9SCN5); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to PAL1 (PHE AMMONIA LYASE 1), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT2G37040.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22053.1); similar to phenylalanine ammonia-lyase 2 [Manihot esculenta] (GB:AAK60275.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22055.1); contains InterPro domain Phenylalanine ammonia-lyase; (InterPro:IPR005922); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Phenylalanine/histidine ammonia-lyase; (InterPro:IPR001106) -0.791766807284769 -8.62569967230146 1.87044932040925e-05 0.128256709900462 9.4670567587361 18.7264551208621 -0.791766807284769 0.0898825661177986
AT3G16030_at 7.60874655522034 7.01406852262381 6.31377379988835 5.92485157352876 6.44855602104535 6.3759841871743 4.35177509487818 4.22412199360753 6.31646561054855 5.16861019565824 3.57496065096776 3.24136278117819 3.79318034711092 3.81644173922478 2.83161929330053 3.20873073299639 3.31848813625509 3.16186380348896 5.70764777459288 0.401110880060296 0.401110880060296 0.401110880060296 0.401110880060296 0.401110880060296 0.46766889071431 0.401110880060296 0.444924582760497 0.461194939115633 0.42410558134102 0.401110880060296 0.442596289773193 0.401110880060296 0.401110880060296 0.446424930589597 0.401110880060296 0.457880577236979 0.419400347316807 0.472069096807771 3 0 / Inf -Inf NA 5439615 5442808 + gene protein_coding_gene FALSE FALSE AT3G16030.1 CES101 (CALLUS EXPRESSION OF RBCS 101); carbohydrate binding / kinase similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to SFR1 [Brassica oleracea var. acephala] (GB:CAA74661.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.948231785437252 -8.6249933104279 1.87161810043841e-05 0.128318136966057 9.46663811173467 10.5823541164118 -0.948231785437252 0.125564777525856
AT4G09730_at 6.77533699863742 7.01894307088951 6.47470082576328 6.32332908824904 6.23139301238629 6.45942227347087 7.0687804286265 7.51388391824762 5.96053771073305 5.84715586800616 4.0823788525933 4.70788061640288 5.01073562244528 4.39283746530078 6.05155664662069 5.80086751923849 5.43403479335989 4.91974820617416 6.1695810390214 0.254341842591626 0.252671519406275 0.255952369830473 0.252752451800332 0.252204036754643 0.278463419271503 0.254946609292410 0.252355707608145 0.246499254199936 0.244925706480081 0.254613736717545 0.249051984709457 0.251925943293489 0.249565654938170 0.249933389604037 0.247482656051609 0.248852859516842 0.249935811634934 0.25801980620237 4 4|0 +|/ 6138062 6138625 6138308.571 6136246 6139708 + gene protein_coding_gene FALSE TRUE AT4G09730.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 39 (EC 3.6.1.-) (RH39) [Arabidopsis Thaliana] (GB:Q56X76;GB:Q682L4;GB:Q6NQ85;GB:Q9SZ89); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G06980.1); similar to Type III restriction enzyme, res subunit family protein [Tetrahymena thermophila SB210] (GB:XP_001027352.1); similar to Os01g0184500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042234.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.832222355726411 -8.62111807888676 1.87804464808490e-05 0.128739960626220 9.4643404178727 12.2544386209607 -0.832222355726411 0.0997689451778287
AT4G17110_at 7.35258165148018 6.63475426394613 6.85391713457956 6.44302198197863 7.23579809805458 7.14582083078268 4.27515518289126 4.02705400858466 5.20524485664453 5.58987627233132 5.90937245424422 5.4323337705992 5.80464967968866 5.94231661678906 6.52206161254995 5.86227766186457 6.59598290191081 5.94576343302059 4.84914649858232 0.234327498918469 0.220841054157144 0.228955598965975 0.223623413508682 0.220841054157144 0.234347145452407 0.226598025143441 0.235545698623532 0.225596938725406 0.226773745501271 0.222538464740640 0.220841054157144 0.229207846567356 0.22784422793317 0.220841054157144 0.220841054157144 0.225519862734716 0.220841054157144 0.221298185118424 4 4|0 -|/ 9613730 9614430 9613966.5 9613629 9615510 - gene protein_coding_gene FALSE TRUE AT4G17110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17120.1); similar to unknown protein [Oryza sativa] (GB:AAG60185.1); similar to Os10g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065419.1) 1.06717106255198 8.61952832876057 1.88068809804868e-05 0.128902362240257 9.46339737671969 11.8543132151303 1.06717106255198 0.150245047144289
AT1G73480_at 10.5084625397766 10.494782976513 11.3022669924214 11.2445931213509 11.5089259903148 11.2223405055235 11.0209699335841 10.9080279078264 9.17239345379903 9.8903413457119 9.65032582461549 9.96180039331201 10.9444513380009 10.3095335985434 9.4933248215441 10.2393213293171 11.3315578641752 10.4129064006833 9.5768568695196 0.0858431299522428 0.0826496409675333 0.0863770075163984 0.0826496409675333 0.0830641040707776 0.0880787568652055 0.085524133478441 0.0833186407954544 0.0931411427708632 0.0855159255237104 0.0866605327392261 0.0855056106483737 0.0837108556733182 0.083685374033088 0.0887387621825087 0.0826496409675333 0.085552359628348 0.088428764100199 0.0867398145468071 1 1|0 +|/ 27635404 27636069 27635823.7 27632600 27636467 + gene protein_coding_gene FALSE TRUE AT1G73480.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G18360.1); similar to Os09g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063095.1); similar to Os03g0719400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051094.1); similar to putative monoglyceride lipase [Oryza sativa (japonica cultivar-group)] (GB:BAD26447.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.66642147645404 8.61662974523948 1.88551849735962e-05 0.129214582624055 9.46167726030152 20.9460128722226 0.66642147645404 0.0542852777963114
AT4G31500_at 12.4522510541054 12.5262975896761 12.8274561101747 12.8252235934862 12.4604572704153 12.231016058525 11.7302863436263 11.6922181258578 10.6251174752406 10.8936110179734 11.3962279271819 11.7432418423045 11.5910763601690 11.6207882848161 11.1615783880333 11.5547924598852 11.3109111089302 11.5619648708949 10.6236332981193 0.0802969253319938 0.0797562641734428 0.080733304490525 0.0804745858071133 0.0836859176565758 0.0795483534145246 0.080440592203636 0.0792798270852039 0.089821033512639 0.080184540757666 0.0797324627714336 0.0792786792431222 0.0792786792431222 0.0792786792431222 0.083891681002473 0.0792786792431222 0.0846011289053195 0.0835965294627681 0.0818009918104254 4 4 - 15273691 15274250 15273981.727 15273477 15275316 - gene protein_coding_gene FALSE TRUE AT4G31500.1 CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1); oxygen binding Encodes an oxime-metabolizing enzyme in the biosynthetic pathway of glucosinolates. Is required for phytochrome signal transduction in red light. Mutation confers auxin overproduction. Identical to Cytochrome P450 83B1 (EC 1.14.-.-) (CYP83B1) [Arabidopsis Thaliana] (GB:O65782); similar to CYP83A1 (CYTOCHROME P450 83A1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G13770.1); similar to cytochrome p450 dependent monooxygenase (GB:AAA79982.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.632113518999835 8.5797461059125 1.94819849560896e-05 0.133490560919126 9.43971303797913 23.4464973944274 0.632113518999835 0.0422410562372582
AT2G39470_at 9.88332063374387 9.96085708876459 9.1714561366499 9.17262206640575 9.56352373540617 9.41884259774153 10.6428635285828 10.6390587449356 10.5974519561256 10.6168197136010 10.2322016459730 10.4473513999762 10.2689034758231 10.2992310889557 10.4314936446481 10.6336687329649 10.2706124295677 10.3105161868700 10.6473379093908 0.104621895486901 0.101838341288935 0.108725700552404 0.108274457197989 0.0995017125677742 0.111170140686612 0.105424232606195 0.103726513431636 0.106271701376722 0.0985781428416697 0.102760909972993 0.101214155201436 0.102119127427652 0.101839754870748 0.103018428478735 0.0982886176958032 0.111356332473123 0.100465929023694 0.107536455808077 2 0|2 /|+ 16483789 16484699 16484261.6 16483294 16484921 + gene protein_coding_gene FALSE TRUE AT2G39470.1|AT2G39470.2|AT2G39470.3 photosystem II reaction center PsbP family protein|calcium ion binding similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to kinase binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAF30961.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.604351532865508 -8.57880594040805 1.94982607874789e-05 0.133582584655018 9.43915131659708 20.2977099925137 -0.604351532865508 0.0284149061378045
AT1G06550_at 5.21882675263773 5.19879656566943 4.13406393479087 3.85350557429387 4.62761121235866 4.66844082594622 6.18005788760478 6.02159022974051 5.04130844862329 5.7501982543164 5.38819234833516 6.1935159154144 5.30356959700455 5.74612931773708 5.66876739883603 6.04887173589846 4.86600274683011 5.16525347137165 5.86306424201071 0.196278950915689 0.198922250320723 0.207698606620086 0.209045584442365 0.195879651222893 0.205529735566663 0.210172297869432 0.211812358950976 0.211913906057457 0.199436234432487 0.198922322575991 0.201437889792968 0.195692297278279 0.199120862408101 0.208690057773355 0.197799889444992 0.212386826800811 0.203665721271268 0.197055196540680 1 1|0 -|/ 2004033 2005385 2004765.778 2003626 2007189 - gene protein_coding_gene FALSE TRUE AT1G06550.1 enoyl-CoA hydratase/isomerase family protein similar to CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1), 3-hydroxyisobutyryl-CoA hydrolase [Arabidopsis thaliana] (TAIR:AT5G65940.1); similar to Os01g0752200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044263.1); similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97000.2); similar to 3-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96998.2); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) -0.66894915197704 -8.57307207213209 1.95978500574378e-05 0.134245272893449 9.4357234990283 10.5373923552529 -0.66894915197704 0.0563141408993399
AT1G34750_at 7.67028613964853 7.6317291871227 8.11988988164252 8.08849598326352 7.6028454202298 7.38061003508448 6.51030345183392 6.02001462689663 5.6942640268169 4.9016984353235 5.85192370947311 6.36596167930325 5.65148635041749 6.34833937639398 5.56476839602588 5.90166452725438 6.06586210332939 5.90736653023816 4.98560137277525 0.218776730464591 0.215818197750856 0.225444689083768 0.219539381692182 0.222531210757687 0.232810176596738 0.216197541874189 0.217688952422161 0.224954344688513 0.220897686100010 0.215818197750856 0.215818197750856 0.220240352446490 0.216694465034987 0.22650801539131 0.220220720073796 0.223942213006319 0.229313752743635 0.218257173618157 1 1|0 -|/ 12736598 12737273 12736946.1 12736070 12738174 - gene protein_coding_gene FALSE TRUE AT1G34750.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G22280.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.801596975547771 8.57124043784241 1.96297815569076e-05 0.134444373883260 9.43462778829248 12.9535349385618 0.801596975547771 0.0935526395897259
AT4G10120_at 10.2548312561452 10.4629441538667 10.3876892848861 10.4921732651610 10.1035625744918 10.0367219302638 11.2184744679103 11.3788885855704 10.3995225512031 11.2674345329370 9.66408077824713 9.70528540721283 10.4209817108281 10.1831960578218 9.25765193004477 11.0784738246789 10.7959520277680 9.78556051045773 10.8541786430595 0.106854297549034 0.107161372551814 0.107002255846918 0.106785518294233 0.105176685879481 0.110719459696187 0.105176685879481 0.105201104284906 0.115120096164149 0.106795862369423 0.113877597917126 0.107786028470795 0.105176685879481 0.110999832166999 0.115276305051132 0.105176685879481 0.110677700079428 0.112520824238923 0.105957815979065 4 4|0 +|/ 6319105 6319746 6319495.5 6314783 6319932 + gene protein_coding_gene FALSE TRUE AT4G10120.1|AT4G10120.2 ATSPS4F; sucrose-phosphate synthase/ transferase, transferring glycosyl groups|ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. similar to ATSPS3F (sucrose phosphate synthase 3F), sucrose-phosphate synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G04920.1); similar to ATSPS1F (sucrose phosphate synthase 1F), sucrose-phosphate synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G20280.1); similar to ATSPS2F (sucrose phosphate synthase 2F), sucrose-phosphate synthase [Arabidopsis thaliana] (TAIR:AT5G11110.1); similar to Glycosyl transferase, group 1 [Medicago truncatula] (GB:ABE86481.1); similar to sucrose-phosphate synthase isoform C [Nicotiana tabacum] (GB:ABA64520.1); similar to sucrose-phosphate synthase 1 [Vitis vinifera] (GB:AAW82754.1); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296); contains InterPro domain Sucrose phosphate synthase, plant; (InterPro:IPR012819) -0.651364323511649 -8.56583633851467 1.97243292032784e-05 0.135072206384050 9.43139293067114 21.0177988680947 -0.651364323511649 0.050283694491358
AT1G08250_at 5.95363052598288 6.08741140882108 5.51772196495008 5.33984192408155 5.11830970803876 5.50677873684172 7.07326925211479 7.340150067036 6.34140896804688 6.55365698919215 5.65791543629285 5.94915118253973 6.33243273547442 6.13508187847994 5.85244601576725 6.60924000881945 6.69469992231106 6.3728821500962 6.68848388236942 0.165386569658872 0.167878252964401 0.175236507745717 0.167027815160868 0.175158625086566 0.174957130263961 0.174100217807957 0.189284862121653 0.180076732839132 0.171253676437555 0.172266106890746 0.170849183929469 0.172090483550933 0.174264862603743 0.179940910581500 0.169070654459069 0.170064136861639 0.170021319664513 0.165386569658872 1 1 - 2589009 2589533 2589227.909 2588854 2590298 - gene protein_coding_gene FALSE TRUE AT1G08250.1 prephenate dehydratase family protein similar to PD1 (PREPHENATE DEHYDRATASE 1), prephenate dehydratase [Arabidopsis thaliana] (TAIR:AT2G27820.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) -0.785160505162098 -8.53994956912878 2.01842793560867e-05 0.138201760751126 9.41585482260745 12.3563047548627 -0.785160505162098 0.0901998674319635
AT1G70280_at 5.43274402067361 5.25771221544877 3.65117739709705 3.92268420458599 4.29769353881166 4.89193285488998 6.34318328852755 6.31394980943657 6.18662385521885 6.52090422671575 6.23768634209288 6.75820954457842 5.96152086357068 6.26077906614129 7.13738959491926 6.0504411250996 5.81878700792865 6.37666450257957 6.73077620579829 0.207982199830138 0.211439209502882 0.215302645481227 0.224335816721264 0.211174763430488 0.211237581102411 0.206517951072388 0.213952551473490 0.210528074419790 0.206591906212544 0.207414748720932 0.204616629175361 0.203906180046130 0.212482987974908 0.205031181834768 0.204225419268769 0.219031401235792 0.204085234741221 0.204010995104113 1 1 - 26469771 26470250 26470000.273 26469556 26472369 - gene protein_coding_gene FALSE TRUE AT1G70280.1|AT1G70280.2 NHL repeat-containing protein similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G23880.1); similar to Os06g0269300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057356.1); similar to NHL repeat [Medicago truncatula] (GB:ABE85368.1); similar to Os02g0730400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048013.1); contains InterPro domain NHL repeat; (InterPro:IPR001258) -0.900137670694646 -8.53795555516359 2.02201980257388e-05 0.138427475684208 9.41465502798652 11.4161944254046 -0.900137670694646 0.117157756946608
AT1G69640_at 9.0116994574464 9.43392045014033 9.73417362878465 9.8332140722137 9.85408566274136 9.5024713828161 9.54344093749533 9.51869551461463 8.18523933869158 7.72681240686621 8.89680346997918 8.69493334655512 9.10832812221512 8.96528472831778 8.58870509171613 8.7387008352572 9.15966505096705 9.0002272459235 6.96388304714872 0.163457213027460 0.152811584770529 0.157464504323446 0.160782536978822 0.155487930230845 0.16077135748987 0.166266162370490 0.154452460495669 0.168713451054863 0.159415812432246 0.160342386159150 0.154228905729033 0.161693079915239 0.152819238632744 0.163842546539350 0.150619883834822 0.171686902132178 0.159753765949875 0.180098267174098 1 0|1 /|- 26197657 26198099 26197854.7 26197322 26199358 - gene protein_coding_gene FALSE TRUE AT1G69640.1 acid phosphatase, putative similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G14290.1); similar to Sterol desaturase family protein [Solanum demissum] (GB:AAU93587.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088); contains InterPro domain Molybdopterin binding domain; (InterPro:IPR001453) 0.811408242756164 8.53749742458871 2.02284604380078e-05 0.138463811698163 9.41437931252119 17.8136589302492 0.811408242756164 0.0967133316324243
AT1G14685_at 7.65921678733261 7.84969330442023 6.95613021975654 7.08183514370585 7.96007799714125 7.94632945582364 5.90190963330112 6.29469863584549 7.02286969185493 6.05101865505505 7.38082210057701 7.75477539844506 7.1275991296031 7.27285010750734 7.48875617016052 6.85892492370392 7.02394941231713 7.04980223254412 5.89654299744521 0.213586238393616 0.211193838826971 0.222476183899454 0.222879697120015 0.211611546718494 0.217233889766966 0.214717888991599 0.213229062704013 0.206332345261028 0.216623242252597 0.211657091589448 0.213466139076370 0.207241403853364 0.212964335765496 0.207108221160282 0.210228162106167 0.207613429963555 0.212810581406628 0.211722839629712 1 1 + 5043327 5043893 5043610.727 5042318 5044289 + gene protein_coding_gene FALSE TRUE AT1G14685.1|AT1G14685.2|AT1G14685.3 BPC2 (BASIC PENTACYSTEINE 2) Arabidopsis GBP Basic Penta Cysteine 1 similar to ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1) [Arabidopsis thaliana] (TAIR:AT2G01930.2); similar to GAGA-binding transcriptional activator [Cardamine pratensis] (GB:ABG57060.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.740460716727085 8.53634237615125 2.02493084004269e-05 0.138586266692522 9.41368407481051 13.990317421737 0.740460716727085 0.0786504897955983
AT2G37940_at 8.7712988675247 8.63868829488416 8.7258434938264 8.7880170573717 8.84281986473612 8.58005001648533 6.69728983251508 6.97393337851244 7.92906284870718 7.34508609633739 8.08449493597978 8.40698421811805 7.73730237045755 8.37183801522048 7.72755571759981 7.7236410191552 7.4781911710198 7.99618767086447 7.16786362134516 0.153861908350416 0.141803435537952 0.151491794651371 0.146004521033528 0.147858460843645 0.145214480204539 0.167652301507591 0.150160666161295 0.155321273124915 0.152495585305223 0.145407750107952 0.144448993101235 0.144751893434266 0.142227416934742 0.148122198065297 0.141803435537952 0.149348209356753 0.153775420281319 0.149479728720397 2 0|2 /|+ 15885542 15886414 15885943.429 15883828 15886733 + gene protein_coding_gene FALSE TRUE AT2G37940.1 similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT3G54020.1); similar to Os01g0850100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044812.1); similar to hypothetical protein PY02331 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_730203.1); similar to Os05g0287800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055096.1) 0.711991774542222 8.53404433434191 2.02908575115030e-05 0.138850337951215 9.4123004376652 15.9629652233646 0.711991774542222 0.0707263974861313
AT4G33760_at 5.36068290699721 5.23306172672795 4.71315004566618 4.83647972104578 4.96666715135314 4.71481754116702 5.96325753562241 5.89409761923478 4.43876064551754 5.38027415424831 4.07988728781342 5.03845848050376 4.14321918445515 4.1466575994637 5.5280386667086 4.82038147177359 4.99894758466908 4.47513335161615 5.69177979774251 0.221211338185766 0.221678597209001 0.218050724544537 0.230998937608473 0.215386879390278 0.216731702298931 0.215231284555445 0.223922538762901 0.219183734156564 0.225128675433194 0.220242161732052 0.217073254997716 0.222758928947961 0.220392888060696 0.222358068707316 0.217176230805228 0.216431350702224 0.221978780626583 0.220814909745293 4 0|4 /|- 16189299 16190089 16189716.875 16189146 16193271 - gene protein_coding_gene FALSE TRUE AT4G33760.1 tRNA synthetase class II (D, K and N) family protein similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G13490.1); similar to aspartyl-tRNA synthetase [Anabaena variabilis ATCC 29413] (GB:YP_320768.1); similar to aspartyl-tRNA synthetase [Nostoc sp. PCC 7120] (GB:NP_486476.1); similar to putative aspartyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61344.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain GAD; (InterPro:IPR004115); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase bacterial/mitochondrial type; (InterPro:IPR004524); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) -0.660713705732457 -8.52953839427594 2.03726001367622e-05 0.139389330135727 9.40958582321097 10.1223327739159 -0.660713705732457 0.0546449236330829
AT1G27630_at 8.96964794613689 8.76148819829834 8.58901610053274 8.39740915304335 9.68398655786322 8.52213410721582 7.34521066286678 7.05361691449963 5.86005180394345 5.5893790496981 7.45552647871592 7.61454098115707 8.04444332480943 7.85026144362065 7.49518336168061 7.2709117479783 7.58139893556587 7.72050570481333 5.46431827987666 0.221597055283875 0.226685298619952 0.220875083917754 0.219159030585208 0.219103969114518 0.230136182028005 0.224211914169312 0.214385095082925 0.227530816178728 0.227221089902279 0.213388030731732 0.213388030731732 0.214140243191602 0.218729635353803 0.213388030731732 0.213388030731732 0.241579620153434 0.224045116459053 0.240101450431953 1 1 + 9612956 9613863 9613313.091 9611090 9614321 + gene protein_coding_gene FALSE TRUE AT1G27630.1 cyclin family protein similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to Os12g0485400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066781.1); similar to Cyclin, N-terminal domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92940.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 1.37841283433331 8.51828957484136 2.0578261376188e-05 0.140775886074502 9.40279959813457 15.0488201426231 1.37841283433331 0.213002927786073
AT2G38610_at 6.4224019417082 6.39674360201685 6.6964627702062 7.04346257769062 7.15550913312875 7.5746772941649 6.27950015308801 6.6378806403883 6.57654447267076 5.97614874627403 7.92939414469567 6.92936906732856 7.26713293629578 7.67846501931721 7.48917575377867 7.3761127278714 6.96717439463919 6.58116829974185 6.05841680993726 0.193160141280503 0.194496290097162 0.19354523171012 0.196450550294937 0.199995014233495 0.195434248882387 0.203992604085136 0.201888387065465 0.204733979649166 0.215769639186127 0.202170243320082 0.194411472789349 0.191735913686192 0.193916880685636 0.198178601130514 0.191735913686192 0.217725834954198 0.195742382032241 0.212846601945884 2 2 - 16154661 16156047 16155435.818 16154191 16156951 - gene protein_coding_gene FALSE TRUE AT2G38610.1|AT2G38610.2 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08620.1); similar to hypothetical protein [Nicotiana tabacum] (GB:BAD06470.1); contains InterPro domain KH; (InterPro:IPR004087) 0.878471029747568 8.5153573820349 2.06322472934729e-05 0.141124571487355 9.40102845951886 13.5163059570086 0.878471029747568 0.112845141670555
AT4G25880_at 9.0759907837304 9.12418907724492 9.46627362201848 9.56238412952833 9.6567662391675 9.46240090420428 8.61064484551272 8.3875197595208 7.59211231071117 7.81440108573493 8.09878268487719 8.34141549893785 8.50971867970459 8.50097088554508 8.06355903623228 8.68004924619108 8.64472856892494 8.50790317503864 8.10697892511153 0.145181089969524 0.140303465951923 0.152689040331207 0.145442610068153 0.149025357069713 0.150621502497572 0.140303465951923 0.140303465951923 0.15463161061415 0.147276627958408 0.146007449375352 0.140303465951923 0.144726913712237 0.140303465951923 0.156187317260076 0.143968616918298 0.147892688156057 0.142784272738876 0.148123406902864 4 4|0 +|/ 13157872 13158728 13158252.9 13154717 13159391 + gene protein_coding_gene FALSE TRUE AT4G25880.1|AT4G25880.2|AT4G25880.3 APUM6 (ARABIDOPSIS PUMILIO 6); RNA binding similar to APUM5 (ARABIDOPSIS PUMILIO 5), RNA binding [Arabidopsis thaliana] (TAIR:AT3G20250.1); similar to putative pumilio-family RNA-binding domain-containing protein(PPD1) [Oryza sativa (japonica cultivar-group)] (GB:BAD09696.1); similar to Os08g0519800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062262.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.658965152653176 8.5128929943954 2.06777415043421e-05 0.141415074148196 9.39953918726088 17.2963820430079 0.658965152653176 0.0544841914844081
AT1G32640_at 8.85662867368375 8.8958904821719 8.64136794021913 8.62457845703108 8.46301683322125 8.23052602702264 7.249838897121 7.38815629595888 5.8161735636572 6.6708678572221 6.73508991607599 6.60548736838361 7.08287249408699 6.97402964453526 6.64308110499658 8.09512834336175 7.59515690521958 7.2291138799182 6.2110512661905 0.202445412332585 0.199916893713418 0.199140075679085 0.204220534268674 0.196574338698629 0.214731689872302 0.197135198009827 0.195205304046341 0.208946463786781 0.206946145388550 0.204894018679979 0.205513653720498 0.206368589555285 0.201845910208224 0.206376300215729 0.202639790666970 0.207422981187294 0.206174615260601 0.211767129925633 1 1 - 11799118 11799531 11799319 11798790 11800968 - gene protein_coding_gene FALSE TRUE AT1G32640.1 ATMYC2 (JASMONATE INSENSITIVE 1); DNA binding / transcription factor Encodes a 68 kD MYC-related transcriptional activator with a typical DNA binding domain of a basic region helix-loop-helix leucine zipper motif. Its transcription is induced by dehydration stress and ABA treatment and precedes the induction of rd22, whose expression ATMYC2 can activate. Negative regulator of blue light?mediated photomorphogenic growth and blue and far-red-light?regulated gene expression. Positive regulator of lateral root formation. Interacts with the Z- and G-box light-responsive elements of minimal light?regulated promoters. Identical to Transcription factor AtMYC2 (R-homologous Arabidopsis protein 1) (RAP- 1) (Basic helix-loop-helix protein 6) (bHLH 6) (AtbHLH006) (rd22BP1) (BHLH) [Arabidopsis Thaliana] (GB:Q39204;GB:O48644;GB:Q8W2F4;GB:Q9LPJ8); similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G17880.1); similar to phaseolin G-box binding protein PG1 (GB:AAB00686.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.639770560927644 8.51286005793977 2.06783502843615e-05 0.141415074148196 9.3995192788393 14.9700967105181 0.639770560927644 0.0473952002505108
AT3G22200_at 10.0907684034838 10.0178086865693 10.3424928758367 10.3607947602948 10.4256913015177 10.1792291121407 9.8055389350516 9.68068759134777 9.41211563390464 9.28515068382683 10.0153126549622 10.157721971786 10.1024947888190 10.3666916144912 10.1799134478246 10.1653207042485 10.008575617476 10.1444587724371 9.1434658100534 0.0812209023990442 0.0787026242417152 0.0795811991677752 0.0811582364072485 0.07644784245932 0.0840254105306183 0.0780727466694338 0.0798409874399032 0.085394256510189 0.0805123864886418 0.0801804024463592 0.0772775068655394 0.0822976622565361 0.0774911244831996 0.0840664553628365 0.07644784245932 0.0790543807632232 0.082848059082008 0.0875940532986496 3 3|0 +|/ 7837689 7838669 7838239.375 7835155 7839068 + gene protein_coding_gene FALSE TRUE AT3G22200.1 POP2 (POLLEN-PISTIL INCOMPATIBILITY 2); 4-aminobutyrate transaminase Genetically redundant with POP3;mediates pollen tube guidance. Double mutants are self sterile; gamma-aminobutyrate transaminase subunit precursor; nuclear gene for mitochondrial product. similar to acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative / AOTA, putative / ACOAT, putative [Arabidopsis thaliana] (TAIR:AT1G80600.1); similar to gamma-aminobutyrate transaminase subunit precursor isozyme 3 [Lycopersicon esculentum] (GB:AAO92257.1); similar to gamma-aminobutyrate transaminase subunit precursor isozyme 1 [Lycopersicon esculentum] (GB:AAO92255.1); similar to viroid RNA-binding protein [Solanum lycopersicum] (GB:CAD12664.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) 0.645334131122509 8.51217457155476 2.06910249563826e-05 0.141464537626788 9.39910491094427 19.8242790778306 0.645334131122509 0.0495521558921589
AT4G02590_at 5.68490122831668 6.39609648668138 6.54125290909398 6.78127008435154 7.19391652673599 7.08830535305518 5.59605937909909 5.90719082198335 4.71567918175251 4.49646967509006 5.96723209632994 5.48560015959303 5.15872387502478 5.35835553177626 5.09983090648562 5.61366853905361 5.91920731891427 5.39224725062305 4.22854083733356 0.246247581025693 0.236369659877465 0.253362823862001 0.239664081689397 0.237599959559951 0.257015408782389 0.244436481362328 0.241046923294108 0.243061569771222 0.239380080689397 0.234796118643062 0.234796118643062 0.239831454606042 0.246329087369857 0.237507741788672 0.238798830278227 0.245592379438138 0.24927034527714 0.244048952366124 4 4|0 -|/ 1137970 1139512 1138475.8 1137498 1140491 - gene protein_coding_gene FALSE TRUE AT4G02590.1|AT4G02590.2 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor|UNE12 (unfertilized embryo sac 12); DNA binding similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G03040.1); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 1.01212627547771 8.50755212209875 2.07767190893030e-05 0.142029651694476 9.39630940032155 11.3884181525565 1.01212627547771 0.141795402588867
AT1G77580_at 4.67755900484284 4.4561137381823 3.57536451254348 3.5974884709512 4.65995032073309 4.11604327109822 7.02666531207077 6.97791262656747 5.08134749149243 6.46331226439445 5.9468379027948 6.79095295377995 6.45713080986423 6.35262962303357 6.03587083600337 6.22468304159881 5.36832487855587 5.86798953384835 6.43101898525703 0.276975660462070 0.275623263439435 0.299147172179652 0.282049092236821 0.270529473296488 0.287911243012477 0.274240040226761 0.280555066133714 0.279046701545838 0.270774609051768 0.270529473296488 0.270529473296488 0.270529473296488 0.270529473296488 0.277850085284285 0.27321986853568 0.274324853379427 0.270529473296488 0.274395838201213 1 1 - 29149089 29149730 29149318.727 29148919 29152478 - gene protein_coding_gene FALSE TRUE AT1G77580.1|AT1G77580.2 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21810.1); similar to Os11g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065858.1); similar to coiled-coil protein [Lycopersicon esculentum] (GB:AAN03605.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21810.1); similar to Protein of unknown function DUF869, plant [Medicago truncatula] (GB:ABE86171.1); similar to Os11g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065858.1); similar to Os07g0506600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059734.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) -0.829345746432059 -8.49203353295688 2.10672993204974e-05 0.143994990855600 9.38690769213389 10.9471098376984 -0.829345746432059 0.102049321133918
AT4G38850_at 7.02903765836665 7.44131220601879 7.9839735791218 8.0418941333756 9.05672284200529 8.8031035962761 8.29063142070545 7.91662595595073 8.31367370055756 8.23258263575287 9.49760858576121 9.19731616017763 9.5618820217675 9.14265507015768 9.28079752698806 9.50954607193328 9.24484524995748 8.98064525252025 8.68287239758407 0.163611803849693 0.163119399326864 0.154936218786324 0.165900295843594 0.161328257702313 0.160244644354481 0.156452317388395 0.156518628915764 0.182769911702328 0.156794613697688 0.164227550245790 0.162355007367382 0.163349597111206 0.167939376604685 0.170209802360537 0.165453265116808 0.166298549167067 0.174256977794953 0.156259220034469 4 4 + 18126251 18126472 18126352.727 18126165 18126674 + gene protein_coding_gene FALSE TRUE AT4G38850.1 SAUR_AC1 (SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA) mRNA is rapidly induced by auxin and is very short-lived. Has been used as a reporter gene in studying auxin mutants. similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT5G18080.1); similar to SAUR [Raphanus sativus] (GB:BAA25434.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.847112070938673 8.4869874981726 2.11627514902128e-05 0.144626243684114 9.3838451202405 16.9262234591639 0.847112070938673 0.106330495014011
AT1G59590_at 7.94785359194222 8.1662942378668 8.53722153096591 8.6446901909482 7.91472620036677 7.68239463374538 4.68526683747278 5.09079229548932 4.54216612831475 4.82434040263332 4.34087154634078 4.60066249029505 4.76479933971643 4.72635564288824 3.88006776072997 4.86400996189453 4.81757802048206 4.34405697595601 4.72317268387143 0.233255751387318 0.227069154345146 0.224894927453803 0.226701732724008 0.227669911205167 0.231311924385197 0.226231497229794 0.235383292504806 0.227848585225235 0.225471176504677 0.225948023858101 0.23046430781953 0.226208729635654 0.230955294038694 0.23660260355997 0.224339502305179 0.232471451583175 0.227073577478371 0.228351152133633 1 1 + 21891584 21892128 21891832.636 21891417 21892457 + gene protein_coding_gene FALSE TRUE AT1G59590.1 ZCF37 ZCF37 mRNA, complete cds similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10220.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87151.1) 0.783973438664254 8.48404204408498 2.12186897006644e-05 0.144987306724640 9.38205619542845 11.9530849176302 0.783973438664254 0.091194173135341
AT1G11820_at 5.99741077413882 5.50580468172924 4.66745439700667 4.4568623413229 5.06237346241293 4.59140054999444 7.61418155994878 6.98183535161853 5.40638937473194 6.20898881838508 5.48358482334466 5.69430374949955 5.82641927345273 4.9562521607829 5.72047593956515 5.21795778672746 5.67315553532958 5.30927446485437 6.08632092486431 0.302791364040651 0.316695253467732 0.310427661579488 0.314082035718475 0.308845180547710 0.301890887503505 0.316110668037281 0.321600087417792 0.301890887503505 0.319658001768722 0.304897877968766 0.302923773691312 0.304351282656937 0.304354700763065 0.305483812390194 0.301890887503505 0.319951593791155 0.317123928641687 0.303836592609935 1 1|0 -|/ 3992005 3992228 3992117.833 3991039 3993524 - gene protein_coding_gene FALSE TRUE AT1G11820.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.2); similar to Glycoside hydrolase, family 17 [Medicago truncatula] (GB:ABE89104.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -1.12283690507025 -8.48201206158821 2.12573371080844e-05 0.145230127122433 9.38082274623178 11.3025375594490 -1.12283690507025 0.164875125706602
AT1G72800_at 3.72737671090263 4.24665845837929 6.26931718785668 6.49857488891773 6.04456709233095 6.09661219050336 5.66262494374148 6.05345086594892 4.63814699480906 5.61083806245326 6.06673728495054 4.96593919573975 6.04024729671437 5.24999819590613 4.97709100476501 5.66206285234379 6.50836178603041 5.70355826741637 5.17912783905399 0.241026186888021 0.25027331762893 0.241328639846731 0.243927290350455 0.250217571584718 0.242985750010058 0.237552253255607 0.238097575466284 0.248502559166696 0.242634457937873 0.246433939573020 0.236838156832393 0.236838156832393 0.254346747961967 0.250769134462286 0.236838156832393 0.270316843851644 0.250295409958697 0.239389982351788 1 1 + 27401483 27401906 27401721.545 27400878 27402162 + gene protein_coding_gene FALSE TRUE AT1G72800.1 nuM1-related similar to nucleolin, putative [Arabidopsis thaliana] (TAIR:AT1G48920.1); similar to Os04g0620700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053909.1); similar to H0714H04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66982.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.904392640935145 8.47382010328433 2.14140915693854e-05 0.146279659510472 9.3758407273994 10.9696246844503 0.904392640935145 0.119603963835465
AT4G32940_at 12.9267229613186 13.0650356674438 13.5187863475426 13.4760207583228 13.5489654250052 13.5905865192816 12.1019095902226 12.1570572503482 11.3323728398821 11.8032808333553 11.6177442988468 10.9338401869992 12.1596947699105 11.7509600192087 10.7155606204223 12.0109132656323 12.4406765505938 11.9135076501084 11.2987052313302 0.0799828103241538 0.077431053991563 0.0797289567196026 0.0804687216090031 0.0792020677161295 0.0891844022523958 0.0795594869532842 0.0783972994298963 0.0840578059918948 0.0797541399354595 0.0786517002237869 0.0784595438297998 0.0778542906553693 0.0820637531676185 0.077431053991563 0.0780632415165189 0.0818132574339156 0.0799801931313747 0.0802713238348147 4 4 - 15900566 15901532 15901066.818 15900273 15903271 - gene protein_coding_gene FALSE TRUE AT4G32940.1 GAMMA-VPE (Vacuolar processing enzyme gamma); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. Identical to Vacuolar-processing enzyme gamma-isozyme precursor (EC 3.4.22.-) (Gamma-VPE) [Arabidopsis Thaliana] (GB:Q39119;GB:Q9SB73); similar to ALPHA-VPE (ALPHA-VACUOLAR PROCESSING ENZYME), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT2G25940.1); similar to unnamed protein product [Homo sapiens] (GB:BAC86022.1); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49043); similar to aspara (GB:BAA76744.1); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) 0.592825465282071 8.4300747825124 2.22731227942337e-05 0.152125428684616 9.34911525349753 24.6336264674712 0.592825465282071 0.0277605142588439
AFFX-r2-At-Actin-3_s_at 11.7795356894821 12.0557251431659 12.5169618361029 12.6570080294090 12.3938644006836 12.4315417343034 11.7914771524424 12.2789283154061 12.129171519336 12.0312683419031 13.3446013019448 13.2153249451403 13.2143279545588 13.2380106891907 13.2949085909164 13.1171823871148 12.6937831506825 13.0519759905756 11.9710986468365 0.0578963822230493 0.0562151152980786 0.0581563344962629 0.0579328429945442 0.0540244675346363 0.0627800359775766 0.0549416641799819 0.0540244675346363 0.0588807303553171 0.054947804073153 0.0557832962714563 0.0540244675346363 0.0567137981558558 0.0559406588496746 0.0548543831128334 0.0540244675346363 0.0601314166256118 0.055077143123506 0.0549906611594427 NA NA NA NA NA FALSE FALSE 0.81292281595374 8.40480619179604 2.27866577378659e-05 0.155610085691886 9.33358424108113 24.8331855604364 0.81292281595374 0.100150932136315
AT2G30930_at 9.53939023512136 9.5528727969623 9.7892324272461 9.88860142808715 10.1840188865227 10.1644637434195 9.09001308884782 9.24290822071732 9.43855211385902 9.05116111898985 10.6080443161218 9.56573872147752 10.5696476386422 10.3891817742031 9.27090757034586 9.2197205666901 9.26532187094829 9.53579824719506 9.28925810989874 0.0965356971897525 0.0949376098856022 0.098260146831288 0.0979451491122204 0.0959309112212379 0.100714333451098 0.0979001937975895 0.096938232737607 0.114155926704752 0.104825712588195 0.0899624618436482 0.0896874617437225 0.0928087653045458 0.0908557674003087 0.092206519550765 0.100103211086117 0.0938613718229669 0.0959783285795254 0.0949595274187425 2 2|0 +|/ 13169549 13169997 13169747.778 13169446 13170475 + gene protein_coding_gene FALSE TRUE AT2G30930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06540.1) 0.596835504930215 8.3898787011836 2.30961782389139e-05 0.157700705015304 9.32437687822348 19.2127887045916 0.596835504930215 0.0318229142208484
AT3G49780_at 8.71944612826279 9.12462921202055 9.79106820186781 9.86081812725672 9.0112436234719 8.86146218067816 7.39958015170199 7.78216240172097 6.61009659622541 6.43211975330714 6.8117218008879 5.67842801562619 6.85956785173599 7.1990810197521 4.77385309692272 7.46196438889343 8.04808381572014 7.1653764554127 5.70513740989298 0.218703240195698 0.224077771342454 0.224340712853837 0.225305850257452 0.229163592860909 0.225520690946514 0.220924278452904 0.225490964530905 0.224834796995774 0.224777334958536 0.228901895818212 0.23257557063422 0.216513989671458 0.217358008922249 0.248467286324851 0.215765207545213 0.230639653796628 0.220012237574261 0.233991077043745 3 3|0 +|/ 18476739 18477215 18476952 18476664 18477361 + gene protein_coding_gene FALSE TRUE AT3G49780.1 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR); growth factor Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype. Identical to Phytosulfokines 3 precursor (AtPSK3) [Contains: Phytosulfokine-alpha (PSK-alpha) (Phytosulfokine-a); Phytosulfokine-beta (PSK-beta) (Phytosulfokine-b)] (PSK3) [Arabidopsis Thaliana] (GB:Q9M2Y0;GB:Q7PCC0;GB:Q8VWK1); similar to ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR), growth factor [Arabidopsis thaliana] (TAIR:AT5G65870.1); similar to phytosulfokine precursor [Avicennia marina] (GB:AAV33646.1); contains InterPro domain Phytosulfokine; (InterPro:IPR009438) 0.81266759785123 8.38352600985493 2.32293097379129e-05 0.158586497580732 9.32045118586815 15.3182399910863 0.81266759785123 0.100586606081587
AT3G11850_at 6.32799212879337 6.53807500641363 6.20747953484823 6.43056274531055 6.79479344248566 6.80088076342043 5.13244567544321 4.92809818600604 4.286419704622 4.38508334188885 4.97574258540162 4.69646281228314 4.83302156388741 4.91785866945892 4.53928775278981 4.63189588896649 5.18261703609037 4.75254868797593 4.20632437345641 0.248251608670604 0.248814232218259 0.247931748420497 0.247931748420497 0.250557961288238 0.262620946953719 0.250566546290057 0.249229049202139 0.255469693600371 0.257198274082874 0.248482874962366 0.247931748420497 0.249516450209771 0.255878644879839 0.256866826714795 0.247931748420497 0.253803814626913 0.253083690845549 0.255990575072873 3 3 - 3739264 3740168 3739872.818 3738903 3741720 - gene protein_coding_gene FALSE TRUE AT3G11850.1|AT3G11850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06560.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98276.1); similar to Os11g0575900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068136.1); similar to Os03g0650800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050787.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.675173303484889 8.3657520486062 2.36063267535344e-05 0.161136786419626 9.30944437256963 10.6994351926380 0.675173303484889 0.0637480124488045
AT2G44120_at 8.15911395072773 8.1078418455829 6.75034570765548 6.57045156277154 6.9193169872627 6.6769125746841 7.46443966343212 7.38419096419689 6.97389860914751 6.99231095991601 6.8447074050451 7.66869676621566 6.48138135940664 6.51930187705352 7.71013091368398 6.48092929988423 6.4880629234872 5.48882087974313 6.90056877338444 0.179745737041036 0.176651662298558 0.186033275915445 0.176616349673922 0.186077305032292 0.180111733302591 0.183933935842458 0.182058339480883 0.196856783249738 0.182932163910254 0.177688857374194 0.174310425944307 0.177258419239386 0.181387600277137 0.180428922404534 0.177215124196871 0.182307037560973 0.19061605447905 0.187136671316987 2 2|0 -|/ 18256388 18257130 18256667.7 18256118 18257923 - gene protein_coding_gene FALSE TRUE AT2G44120.1|AT2G44120.2 60S ribosomal protein L7 (RPL7C) Identical to 60S ribosomal protein L7-3 (RPL7C) [Arabidopsis Thaliana] (GB:P60039;GB:O80581;GB:Q42208;GB:Q8GUM7;GB:Q940T2); similar to 60S ribosomal protein L7 (RPL7B) [Arabidopsis thaliana] (TAIR:AT2G01250.1); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998) -0.647489375321253 -8.35403579233994 2.38585499387916e-05 0.162834603332253 9.30217010478844 14.0870000114796 -0.647489375321253 0.0547767861274162
AT1G80130_at 8.78149349229991 8.8858719985282 9.17353061549285 9.35377164472515 10.2865525294595 9.9538605416601 8.5635670843899 8.80305453961948 9.27237941453245 8.33277530266751 9.17524954043368 8.60529551547943 10.2217008575322 8.9875140015657 8.63875812599741 10.2604533551219 9.98470031958376 9.47069316395929 9.08295434374012 0.102375399712413 0.103798871573392 0.106185194696223 0.108632479628615 0.110205601091940 0.116268020716421 0.107541739795528 0.103287212721685 0.106534649339372 0.110967604114160 0.101245508173117 0.106222718615034 0.108898865535090 0.107308376413731 0.106665458940224 0.104266041228591 0.104518266427842 0.101245508173117 0.105581618867582 1 1 - 30146176 30147019 30146647.182 30145855 30147538 - gene protein_coding_gene FALSE TRUE AT1G80130.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20190.1); similar to Os06g0606700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058025.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92930.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.727720655218756 8.35105550257823 2.39231832348843e-05 0.16325180239485 9.30031734695239 18.3822537875748 0.727720655218756 0.0795712610243093
AT1G24170_at 5.00435290153153 4.90934717517133 4.17482929909236 3.92427061857730 4.26501548344606 4.36363758217983 6.40119218591676 6.13443505014444 6.94488466570142 6.42796899947224 7.9295848551888 7.3345149394235 6.84833591190359 6.62373736552287 6.86121031760415 6.16210968907992 5.1251704292996 6.7666528641716 6.57356942883964 0.216225248206826 0.209559807451059 0.219967249590309 0.220070305110892 0.230034009982599 0.241975856434275 0.209406717518439 0.211167506878424 0.210183962313959 0.213045579500938 0.218070852700054 0.210681016678180 0.214353663595712 0.221852999393498 0.210441505223066 0.208617428562388 0.216609736501543 0.216293117177995 0.214050686836228 1 1 - 8557461 8557962 8557697.545 8557205 8558821 - gene protein_coding_gene FALSE TRUE AT1G24170.1 GATL8/LGT9 (Galacturonosyltransferase-like 8); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL9/LGT8 (Galacturonosyltransferase-like 9), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G70090.1); similar to Avr9/Cf-9 rapidly elicited protein 231 [Nicotiana tabacum] (GB:AAG43554.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.686393366923655 -8.35081236501866 2.39284646800764e-05 0.163263914512161 9.30016615279413 11.5747461592718 -0.686393366923655 0.0676224087817629
AT4G00430_at 10.3641927689851 10.4562129187208 9.92333847968647 10.0225970533058 10.0939764568556 10.0642570601364 11.0775560804430 11.1695589691554 11.2136886084342 11.0274665862340 10.7682767340076 10.9236893962055 10.7208053230258 10.5425179382547 10.9820592336576 10.6684600986797 10.2419077746589 10.6436617981104 11.1230615994848 0.080730118338906 0.077866096164649 0.079531028977735 0.0834503805059023 0.0786418671297653 0.0824097000514479 0.0780981145806974 0.078891688948014 0.0797107295705112 0.0780835871517419 0.0810552922437707 0.0767795256661533 0.0814231540711577 0.0803877690177869 0.0784317481430973 0.0786039130719555 0.0837622746290716 0.0805495743323794 0.0772045517669122 4 4|0 -|/ 186158 186863 186577.5 185450 187627 - gene protein_coding_gene FALSE TRUE AT4G00430.1|AT4G00430.2 TMP-C (plasma membrane intrinsic protein 1;4); water channel|TMP-C (plasma membrane intrinsic protein 1;4) a member of the plasma membrane intrinsic protein subfamily PIP1. Identical to Probable aquaporin PIP1.4 (Plasma membrane intrinsic protein 1.4) (Transmembrane protein C) (TMP-C) (PIP1.4) [Arabidopsis Thaliana] (GB:Q39196;GB:O23059;GB:O23829); similar to PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1,3), water channel [Arabidopsis thaliana] (TAIR:AT1G01620.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425)|Identical to Probable aquaporin PIP1.4 (Plasma membrane intrinsic protein 1.4) (Transmembrane protein C) (TMP-C) (PIP1.4) [Arabidopsis Thaliana] (GB:Q39196;GB:O23059;GB:O23829); similar to PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1,3), water channel [Arabidopsis thaliana] (TAIR:AT1G01620.1); similar to aquaporin PIP1b2 [Brassica oleracea] (GB:AAG23180.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.587910616402992 -8.33695644512832 2.4231585964952e-05 0.165307879452903 9.29153923672216 21.3003751659741 -0.587910616402992 0.0287852629925752
AT1G13100_at 5.59286655330262 5.82713070630835 4.26913869899444 4.03089993662364 5.4545084491358 4.83564246653913 5.60637112331859 5.73690840374259 5.36442135285632 5.72363211369643 5.12198727710059 5.50936772705489 5.27544964555045 5.39357031794214 4.90377727124284 4.62835573974675 4.58310919477976 3.99645500540568 5.9869716001965 0.235367373477086 0.233659173392030 0.246401568230912 0.236222488082435 0.243683601744199 0.242846050493732 0.236108630044669 0.235496910577566 0.240906926387848 0.233663218936692 0.233494546914826 0.233060412590957 0.229631985079213 0.229631985079213 0.23327676155085 0.230804117054060 0.237314759259704 0.239915152936248 0.230686853918873 1 1 + 4464965 4465496 4465205.636 4463922 4465536 + gene protein_coding_gene FALSE TRUE AT1G13100.1 CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B29 (EC 1.14.-.-) (CYP71B29) [Arabidopsis Thaliana] (GB:Q9SAE4); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to PAD3 (PHYTOALEXIN DEFICIENT 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26830.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.904218904370821 -8.29738879416719 2.51208379982338e-05 0.171349235985953 9.26678798834804 10.4782753145470 -0.904218904370821 0.123788226457715
AT1G15410_at 7.07074390754664 7.28375674457976 5.15156807889478 4.69070468519129 7.07178166920936 6.82662348285989 7.56274064157661 7.24421296791745 8.0866763546923 7.96492906724255 7.81911476462188 8.20630247513484 7.85057449726647 7.78315473606082 7.66803303853348 8.66187133962706 6.93034045785719 7.67964785216976 8.46320587195835 0.20634172860916 0.199982451535071 0.236583559045845 0.236704197442836 0.204535330898744 0.205061794945337 0.206825669777083 0.208717909796062 0.216527341212564 0.200853900721546 0.199283825403667 0.200674882910557 0.199576800123285 0.200275789163255 0.203537455316056 0.199283825403667 0.223501195954863 0.205765462273226 0.199283825403667 1 1 + 5299965 5300627 5300311.909 5298319 5300922 + gene protein_coding_gene FALSE TRUE AT1G15410.1 aspartate-glutamate racemase family similar to Asp/Glu racemase [Medicago truncatula] (GB:ABD28387.1); contains InterPro domain Asp/Glu racemase; (InterPro:IPR001920); contains InterPro domain Aspartate racemase; (InterPro:IPR004380) -0.85095897791921 -8.28132993403678 2.54919984493734e-05 0.173855429424726 9.25669333609326 14.6110083521170 -0.85095897791921 0.112063010590994
AT3G05970_at 9.05985762625678 8.97619890883934 9.11003941431 9.10095396188403 8.87818886670205 8.7917834303953 7.51914779280831 7.138532789324 7.32796527409136 7.4529715228521 7.91034272292303 7.78314047349796 7.82315655837022 7.78823296000151 7.79837471350262 7.85556725557066 8.1914254527543 8.00397234297736 7.19106880273828 0.129250326396007 0.126890821994672 0.127477822279471 0.126409501937489 0.124604250513411 0.130706606724731 0.130574755098165 0.137138154001471 0.147337216619121 0.133769212382304 0.13349887819677 0.124604250513411 0.135191931361508 0.137143460122380 0.137150267575089 0.126509203832318 0.132404930417183 0.130120173467217 0.138755551457547 3 3 - 1786524 1787940 1787223.545 1786324 1791808 - gene protein_coding_gene FALSE TRUE AT3G05970.1 LACS6 (LONG-CHAIN ACYL-COA SYNTHETASE 6) encode peroxisomal long-chain acyl-CoA synthetase (LACS) isozymes similar to LACS7 (LONG-CHAIN ACYL-COA SYNTHETASE 7) [Arabidopsis thaliana] (TAIR:AT5G27600.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96460.2); similar to AMP-binding protein [Brassica napus] (GB:CAA96522.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96461.2); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.68354091620243 8.25771128950471 2.60489553223206e-05 0.177627826342904 9.24179475507276 16.1809770620701 0.68354091620243 0.0690952048803561
AT1G78080_at 8.1490932176377 8.82204332722362 9.12989035120237 9.33203605212105 10.4429271614999 9.83704787461815 8.67050847276500 8.48681645644412 8.7817984208434 8.74985385776806 9.9273685013493 9.69468429204352 9.69081715875958 9.87142617517786 9.53499975077888 9.93224848891852 9.75833913465024 9.5328884239633 8.63630098071907 0.134953246729726 0.131613215498171 0.133630980478184 0.134096222735637 0.130970182635972 0.135825154331970 0.139289815226212 0.139166513801040 0.155263803293627 0.140768986408793 0.130569226152270 0.130569226152270 0.130974679165012 0.140287271703702 0.134888196773777 0.130569226152270 0.140726415238714 0.133846221506143 0.135700758216916 1 1 + 29370088 29370549 29370285.545 29369142 29370966 + gene protein_coding_gene FALSE TRUE AT1G78080.1 RAP2.4 (related to AP2 4); DNA binding / transcription factor encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family (RAP2.4). The protein contains one AP2 domain. There are 8 members in this subfamily. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G22190.1); similar to transcription factor DRE-binding factor 2 [Gossypium hirsutum] (GB:AAT39542.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.0867776978022 8.25388909374665 2.61403465082543e-05 0.178224882493278 9.23937790757702 18.3415441527633 1.0867776978022 0.163676890625423
AT1G03850_at 10.5198246743272 10.6674284085419 10.7408568157289 10.9138773864451 9.56790118338724 9.64166792164436 3.66785649695295 3.85005129014584 6.02689489037892 4.558716286964 3.26872370941469 3.55027094368358 4.2896301020102 3.58276075691953 2.69083498454551 2.59385099946417 4.09899873836062 4.31410833983512 5.38796863073046 0.253294699062406 0.253471544156134 0.252817144811164 0.252957955648083 0.263229359943837 0.252641376166747 0.245166649984491 0.249179358432058 0.266669645703049 0.264546707843793 0.243082800236816 0.255057310578074 0.243082800236816 0.248812412327935 0.257604357272904 0.251095514960345 0.246321807081409 0.245121819318045 0.294463475348933 1 1 - 977246 977647 977454.636 976096 977760 - gene protein_coding_gene FALSE TRUE AT1G03850.1|AT1G03850.2 glutaredoxin family protein Identical to Monothiol glutaredoxin-S13 (AtGrxS13) (GRXS13) [Arabidopsis Thaliana] (GB:Q84TF4;GB:Q94CA3;GB:Q9ZWA7); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G28480.1); similar to Os01g0667900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043812.1); similar to Glutaredoxin [Medicago truncatula] (GB:ABE86256.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905)|Identical to Monothiol glutaredoxin-S13 (AtGrxS13) (GRXS13) [Arabidopsis Thaliana] (GB:Q84TF4;GB:Q94CA3;GB:Q9ZWA7); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT1G28480.1); similar to Os01g0667900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043812.1); similar to glutaredoxin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79508.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.631953164198728 8.2504381905981 2.62231645931919e-05 0.178763313031789 9.23719444098558 13.1327699843818 0.631953164198728 0.0520199713182382
AT4G18820_at 5.86793561005168 5.72660096053249 4.16140216138967 4.30589040104028 5.297262073384 5.60979862353324 4.89176627923279 5.3876096426395 5.65204849788424 5.49203681054716 4.53462646974746 4.75338238870161 4.48684088872478 4.59927484752878 4.69362195910308 4.63176505955076 4.41771826379349 4.89082970077215 5.82288172979596 0.186602755436520 0.189028016830444 0.186194021746429 0.189330284832074 0.195605428454740 0.190782641924094 0.199348613302008 0.186094977234920 0.189479709248472 0.190945559404517 0.195418414380052 0.187902640961147 0.190149903851473 0.187448549635159 0.186832677139428 0.186094977234920 0.214607566605659 0.187127894668549 0.19293643243728 4 4|0 +|/ 10333125 10333721 10333489.7 10330382 10334279 + gene protein_coding_gene FALSE TRUE AT4G18820.1 ATP binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding similar to ATP binding / DNA-directed DNA polymerase/ nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G45720.1); similar to hypothetical protein LOC_Os11g13990 [Oryza sativa (japonica cultivar-group)] (GB:AAX95843.1); similar to Os05g0529600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056123.1); similar to Os01g0730900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044146.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain DNA polymerase III, subunits gamma and tau; (InterPro:IPR012763); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270) -0.827269020223086 -8.24776103731635 2.6287613417031e-05 0.179176373050483 9.23549963181453 10.2968647823001 -0.827269020223086 0.107292784951362
AT2G37678_at 7.3854799409951 7.56395019452396 6.6057682732121 6.52812887253055 7.77103631540314 7.5235218376594 5.2811276314953 5.11193214958392 5.77786517311031 5.95792907081278 6.8118487761251 6.33915853161249 6.40577961378698 6.90130221431279 6.44403636735107 6.23835500218886 5.10902616566955 6.20742246741305 5.55144996575077 0.286297531402508 0.287676359676689 0.286297531402508 0.292977143487621 0.304306691024051 0.286297531402508 0.291574829450116 0.286297531402508 0.302814103638091 0.286297531402508 0.286297531402508 0.286297531402508 0.289808924159436 0.288971194504881 0.294322390952960 0.286297531402508 0.306840099342589 0.313266258145118 0.293736391322624 2 2 - 15808938 15809278 15809080.571 15808543 15809871 - gene protein_coding_gene FALSE TRUE AT2G37678.1 similar to phytochrome A specific signal transduction component-related [Arabidopsis thaliana] (TAIR:AT5G02200.2) 0.658096375650631 8.22584995807266 2.68217269897761e-05 0.182790069435324 9.2215985121048 12.7561335913582 0.658096375650631 0.0618582765875687
AT1G22500_at 7.76757723634993 8.22032053938398 9.30013909321907 9.56942967505664 9.73090192104857 9.76324424013415 7.65253068606357 7.98900110946952 3.44428300036805 6.10377150881559 3.48895950138734 1.46373004894989 5.13088889559212 5.21352309780034 2.13838946117982 4.87778481012206 8.0577717451294 4.23287258072502 3.5046626648778 0.237069763832242 0.238013049687169 0.240407207977297 0.237694526050043 0.237069763832242 0.242405086072016 0.242755723591913 0.240019869504899 0.237171076304389 0.247378312610538 0.238256665638596 0.254005567968876 0.243132402753409 0.240704684954217 0.253714258375962 0.243817043233639 0.247574845598814 0.247855893511223 0.242504141273049 1 1 + 7950122 7950683 7950361.727 7949465 7950889 + gene protein_coding_gene FALSE TRUE AT1G22500.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1C precursor (RING-H2 finger protein ATL15) (ATL1C) [Arabidopsis Thaliana] (GB:Q9SK92); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72200.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE77983.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.82907781623573 8.22300596482284 2.6891929130901e-05 0.183241605097959 9.21979026000136 13.0873409337396 0.82907781623573 0.108315118313266
AT3G52290_at 5.19535668678809 6.13735590573541 4.04890575498306 3.84548275609828 4.45749890100355 4.49048466026820 7.05228696206035 7.41225826282528 6.79873309236374 6.95097375150952 7.31548456333031 8.15386112256582 7.05279337737873 6.9403607624545 7.0532787398923 7.21107952991357 5.15735656291295 6.14234157606715 7.08451872717609 0.246693386036584 0.241940137331864 0.246777028352189 0.253095595586954 0.243272067802290 0.258508118902224 0.244771852505341 0.249057486923092 0.255059801163273 0.242037240835556 0.238365157721792 0.241302290579488 0.242099323964206 0.246565277868406 0.244252398611659 0.242460102187473 0.263915190117068 0.23930468683287 0.242862363519302 3 3 + 19406625 19407111 19406849 19404797 19407381 + gene protein_coding_gene FALSE TRUE AT3G52290.1 IQD3 (IQ-domain 3); calmodulin binding similar to IQD2 (IQ-domain 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G03040.1); similar to IQ calmodulin-binding re (GB:ABE78306.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -1.15257188198302 -8.21428220489813 2.71085404872807e-05 0.184690486339843 9.21423792500362 12.2414844293857 -1.15257188198302 0.17812115997765
AT3G53610_at 7.9467705105432 8.0564436719844 8.07084429583978 7.9433035932094 8.21627505044259 8.16056217728112 7.37966764357119 7.34103996572439 6.30365456305417 6.69916707794325 7.55132695114092 7.81928581163212 7.42907079003987 7.8433480066757 7.24711333115215 7.3957679494285 7.07178075018897 7.328680476774 7.12925786016117 0.159352465324207 0.158951075304007 0.163410893223166 0.163103490418551 0.167276263950405 0.158951075304007 0.164742673246938 0.166911951693355 0.174689133402994 0.169007877150133 0.162167189610257 0.162862908205814 0.167283638874414 0.165611987459355 0.168886256689053 0.160869840559576 0.166060056447033 0.163555886942908 0.162907020867410 3 3|0 -|/ 19887536 19888692 19888171.556 19887210 19889497 - gene protein_coding_gene FALSE TRUE AT3G53610.1|AT3G53610.2|AT3G53610.3 ATRAB8; GTP binding|ATRAB8 GTPase AtRAB8 (atrab8) similar to Ras-related GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59840.1); similar to Sigma-54 factor, interaction re (GB:ABE82101.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.583434711281795 8.21220502651463 2.71604009168031e-05 0.185016651045263 9.21291462604952 14.9751083262905 0.583434711281795 0.0313849100943696
AT1G12280_at 4.66377774829636 5.28141131229999 4.65479921647437 4.51733746744142 4.62489176125324 4.54607492746409 5.67116358301835 5.84307996716049 5.12046756074869 5.30714750238027 4.07060310983849 4.70466904805911 5.03192418755447 4.2209266457616 3.97068712167409 4.53216282704556 4.52393182298954 4.35980230079419 5.62983994679036 0.231050218200283 0.225566780721478 0.226065803660869 0.226148909637600 0.223728476306959 0.226257343300672 0.223728476306959 0.229607848058573 0.247097586103891 0.230300250025871 0.224647456792433 0.223728476306959 0.227576822987985 0.230805992080557 0.233273712751195 0.228209114182159 0.232993556414394 0.231521470849794 0.223751468442702 1 1 - 4174892 4175442 4175160.909 4174873 4177557 - gene protein_coding_gene FALSE TRUE AT1G12280.1 disease resistance protein (CC-NBS-LRR class), putative Identical to Probable disease resistance protein At1g12280 [Arabidopsis Thaliana] (GB:P60838;GB:Q9LNB5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G10780.1); similar to RFL1 (RPS5-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G12210.1); similar to RPS5 (RESISTANT TO P. SYRINGAE 5) [Arabidopsis thaliana] (TAIR:AT1G12220.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62353.1); similar to NBS-LRR type disease resistance protein [Poncirus trifoliata] (GB:AAN62351.1); similar to Probable disease resistance protein At1g51480 (GB:Q9C8K0); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.852364464938665 -8.2024508984134 2.74054019657599e-05 0.186658192788791 9.2066941401504 9.86497869106157 -0.852364464938665 0.114286102917936
AT2G42530_at 11.1395109290597 11.2292616399951 9.00270020836433 9.15907863578757 10.2890090927843 10.0248555885029 9.48761458535177 9.59193558809367 7.09762073514169 8.70291569783276 10.1415470501337 10.3136810832532 9.7940874366077 9.9799964008183 9.83777265002256 9.07114878747734 9.14406485801473 9.17097826448217 7.14498302356372 0.140079134432776 0.140763290726650 0.141968994829283 0.138455579495774 0.141372058116511 0.140715193320962 0.145556704428089 0.142053142322119 0.169661486475780 0.149434515269602 0.137081164315821 0.138886239378178 0.140834585265510 0.138342333457201 0.141758815075441 0.136023877710411 0.142512412712377 0.141497921704767 0.153443617694065 2 2 - 17716304 17716911 17716678.727 17716114 17717023 - gene protein_coding_gene FALSE TRUE AT2G42530.1 cold-responsive protein / cold-regulated protein (cor15b) similar to COR15A (COLD-REGULATED 15A) [Arabidopsis thaliana] (TAIR:AT2G42540.2); similar to cor15b (GB:AAA32774.1); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241) 0.644991638286616 8.19648384050044 2.75564850915577e-05 0.187659663473508 9.20288351492125 18.6555788094244 0.644991638286616 0.058216717586435
AT3G19580_at 6.26199750364535 6.57125697484595 8.09016580969703 7.98860649179462 7.56020446980418 7.40618456354954 5.9347492868567 6.25147556356455 5.99182135158581 5.78060548516844 5.38501389683652 4.62531096533523 5.99149981857949 6.02301231674652 4.53863741307986 6.54263017614163 7.37479483070952 5.69485744479485 5.70314257069012 0.236419107823071 0.235906274522574 0.243208499336126 0.248933564000059 0.24654352773803 0.249007116784913 0.23749145514076 0.236832237657154 0.250588333001189 0.235906274522574 0.23950482106351 0.243083415755174 0.238299955937815 0.241139511122917 0.250233588464234 0.235906274522574 0.239184429103585 0.242163207019101 0.243594956709867 3 3 - 6803335 6803829 6803580.727 6803172 6804239 - gene protein_coding_gene FALSE TRUE AT3G19580.1 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2); nucleic acid binding / transcription factor/ zinc ion binding Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. similar to STZ (SALT TOLERANCE ZINC FINGER), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G27730.1); similar to zinc-finger protein 1 [Datisca glomerata] (GB:AAD26942.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.726600153389852 8.1964578666299 2.75571447482265e-05 0.187659663473508 9.20286691899713 12.8066597880994 0.726600153389852 0.082992907057462
AT3G57450_at 7.23136343406787 7.35317539122849 7.97735482120248 8.31410385867968 6.7529654301093 6.35163052659026 6.1045186663843 6.33520542545259 6.07806783468214 5.28940973531439 6.92850019959894 7.35219971958865 5.65191332520542 7.14325289507401 6.96365484382436 6.31213887178817 6.12649550998009 6.00721832032676 5.3109911143763 0.261914017132249 0.256779856202168 0.267017407699706 0.256779856202168 0.259683499614736 0.27259298302387 0.263009016837671 0.256779856202168 0.266126304507052 0.262538562106463 0.256779856202168 0.259584058744263 0.265257731633081 0.261642989681853 0.256779856202168 0.257294577905945 0.283088228228928 0.266231731614308 0.258542129980784 3 3 + 21273015 21273269 21273138.455 21272911 21273599 + gene protein_coding_gene FALSE TRUE AT3G57450.1 similar to Hypothetical protein [Oryza sativa] (GB:AAM08779.1); similar to Os07g0185900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059068.1) 0.797065039538904 8.19350711500254 2.76321986085318e-05 0.188120008126885 9.20098105191663 13.1126203302798 0.797065039538904 0.101281216336564
AT3G58830_at 5.50547392783755 5.56807552232511 4.99823444302181 5.27954213468637 4.65844300038936 4.46321814554343 6.56164338801895 6.79767979920882 6.06409708511272 5.69681542857716 5.46676623955133 5.99377427135635 5.5814629851376 5.95048336532427 5.95468751194946 6.0417880015279 5.72335657512088 5.54375253201701 5.94953670647669 0.210710854776512 0.209481417543869 0.209706631661624 0.212172328102281 0.207871245776761 0.217950732977361 0.211432665146947 0.207335856500119 0.223483557177586 0.223560709928165 0.214932519071378 0.208195182955764 0.21360762997355 0.224765847913618 0.221830722481341 0.211815059891254 0.219061661262725 0.209958137255332 0.214579232592725 3 3|0 -|/ 21766427 21767153 21766853.222 21766030 21767618 - gene protein_coding_gene FALSE TRUE AT3G58830.1 haloacid dehalogenase (HAD) superfamily protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89895.1); contains InterPro domain HAD-superfamily phosphatase subfamily IIIA; (InterPro:IPR010021); contains InterPro domain HAD-superfamily hydrolase subfamily IIIA; (InterPro:IPR006549) -0.689916433289059 -8.1872530017888 2.77920236700605e-05 0.189180305122102 9.19698072362391 11.3217847994474 -0.689916433289059 0.0727815554122495
AT3G50500_at 10.746719558963 10.7564649228198 10.6238060617798 10.6726393173614 11.1750538549475 11.1123752709350 9.76467195456144 9.60419529735728 9.96028127577527 9.65316342113296 10.2740569655408 9.98205085041614 10.3929835800161 10.2222673017273 10.1213482779589 10.0159286397366 10.3915631945451 10.4177581487283 9.6212561103675 0.0706967256718881 0.068361399115973 0.0712098080414894 0.0715577256512137 0.068361399115973 0.0687149024278603 0.0719604086708157 0.0695789258246873 0.0825182699092656 0.0701804436750024 0.0714438349678856 0.0695413188847192 0.0724418426549561 0.0709767202170126 0.0718120963885131 0.0699479730287731 0.068361399115973 0.0725940826626612 0.0710527457200073 3 3 - 18752877 18753376 18753070.909 18752571 18755054 - gene protein_coding_gene FALSE TRUE AT3G50500.1 SPK-2-2 (SNF1-RELATED PROTEIN KINASE 2-2, SNF1-RELATED PROTEIN KINASE 2.2); kinase/ protein kinase encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth. similar to SNRK2-3/SNRK2.3/SRK2I (SNF1-RELATED PROTEIN KINASE 2-3, SNF1-RELATED PROTEIN KINASE 2.3), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT5G66880.1); similar to Os03g0764800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051371.1); similar to serine/threonine protein kinase SAPK8-like protein [Solanum tuberosum] (GB:ABA40436.1); similar to Os03g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050653.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.58015002178615 8.17440423758256 2.81235940226709e-05 0.191409180918298 9.1887484315646 20.5430632243034 0.58015002178615 0.0310347480715156
AT3G06035_at 6.24948503713365 7.08390185778955 3.86823663898665 4.23283582160384 4.36044536851303 4.58944139592853 7.8853101049414 8.39603724654282 5.87866912422567 7.30380943589506 7.92217805263198 8.4627455526929 7.10383287862755 7.4873385355977 8.03369930640976 7.09547398486142 6.07515305468732 7.26173724603373 6.77021330648089 0.209690775674031 0.205758030830978 0.218740218540721 0.209934520736037 0.213284566574281 0.225120966863124 0.206518800665633 0.20794501177468 0.224966571694045 0.201951668260541 0.202486216152839 0.203800001217681 0.201951668260541 0.208728151540256 0.205845421322096 0.203177785497851 0.232238631480043 0.215904003778162 0.209500688323288 3 3 - 1823240 1824040 1823473.091 1823105 1824222 - gene protein_coding_gene FALSE TRUE AT3G06035.1 Identical to Putative GPI-anchored protein At3g06035 precursor [Arabidopsis Thaliana] (GB:Q84MC0;GB:Q8H7F7;GB:Q8L9J0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19250.1); similar to Os07g0645000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060451.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07018.1); contains domain PR-1-like (SSF55797) -1.18078560888413 -8.17307856325441 2.81580520888165e-05 0.191615544464396 9.18789800372993 12.8737952415849 -1.18078560888413 0.184971506571502
AT2G17990_at 6.49851990564577 6.48409113006409 6.58233146416033 6.98262107320947 7.26572691822215 7.07985948769882 5.38140077399988 5.47582037225656 5.12513061679554 5.22148035449711 5.62392064924007 5.65051429071109 5.09394200106062 5.55874867784443 5.74574164959644 6.03749461409713 5.8837045434719 5.78594196329545 5.48731447677546 0.224882030580720 0.213387960763487 0.213884903036299 0.219018772274316 0.216139683221318 0.228591442116639 0.215346276547639 0.224120558949390 0.218919007738471 0.223486263767301 0.21662817098541 0.232121992484970 0.223999666963634 0.213387960763487 0.218626803949055 0.220800454957491 0.217499167379412 0.215451084114244 0.213977004906494 2 2|0 +|/ 7834994 7835606 7835220.7 7833899 7835836 + gene protein_coding_gene FALSE TRUE AT2G17990.1 similar to kinectin-related [Arabidopsis thaliana] (TAIR:AT5G66250.3); similar to putative calcium-dependent protein kinase CPK1 adapter protein 2 [Mesembryanthemum crystallinum] (GB:AAR06858.1); contains domain no description (G3D.1.20.58.90) 0.706101294819861 8.16078189803455 2.84799121960079e-05 0.193777322581638 9.18000016372916 11.9440344896675 0.706101294819861 0.0781436613350733
AT2G36620_at 9.39288884603122 9.5235738153229 8.7431553786953 8.59716109296709 8.3267964803041 8.39350117003577 9.49705718527468 9.63040203129402 9.08171842135031 9.32149191642302 9.0379688369056 9.5842051585907 8.68092410607412 8.7022862202082 9.80841039802997 8.42342190296671 8.38025413360401 8.56671733497429 8.91032450296968 0.119950152826592 0.118558791073628 0.114406448438730 0.118050906264426 0.123043583581540 0.124494397368197 0.121147320421558 0.122781160174837 0.125914337595098 0.120308854160012 0.119335681671449 0.119352619278407 0.114406448438730 0.133353393606811 0.120535698134650 0.118965466377468 0.122322880938342 0.120801598349044 0.118903840386205 2 2|0 -|/ 15357651 15358373 15357973.556 15357428 15358979 - gene protein_coding_gene FALSE TRUE AT2G36620.1 RPL24A (RIBOSOMAL PROTEIN L24); structural constituent of ribosome RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020). Identical to 60S ribosomal protein L24-1 (RPL24A) [Arabidopsis Thaliana] (GB:Q42347;GB:Q9LF73;GB:Q9SKP1); similar to STV1 (SHORT VALVE1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G53020.1); similar to 60S ribosomal protein L24 (GB:O65743); contains InterPro domain Ribosomal protein L24E; (InterPro:IPR000988) -0.601157520570973 -8.14842004732737 2.88075845439854e-05 0.195977997652733 9.17204321852406 18.0143345624907 -0.601157520570973 0.0426091566030359
AT2G18090_at 7.18987507369271 7.19035005199628 7.25108220264052 6.98996758684272 7.33344536455928 7.73953533026528 6.14459525954847 6.11675083404094 5.90323858784835 5.6973786125611 6.79658941073985 6.69726133523314 6.34504929747163 6.25195451879359 6.42920570336373 7.0377316115233 7.36795495659926 6.29780948306959 6.0165311258242 0.223098313782589 0.212122837674983 0.213092065539029 0.216219484608761 0.212976568959906 0.215420060034801 0.216470195253931 0.218367471234877 0.22513655163664 0.229164447883316 0.227519564505593 0.216564541453036 0.218894476861855 0.217295834836547 0.218319059185759 0.212378167484956 0.212859529848146 0.218482940577875 0.223137565395829 2 2 + 7873806 7874326 7874086.727 7871396 7874848 + gene protein_coding_gene FALSE TRUE AT2G18090.1 PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51120.1); similar to Plus-3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54582.2); similar to Os10g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065041.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain GYF; (InterPro:IPR003169); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) 0.724338290222696 8.14238332210638 2.89691117414104e-05 0.197047898065073 9.16815127000564 13.2571138704535 0.724338290222696 0.0836886056898186
AT1G59580_at 8.48449340537 8.32028985984543 8.63485632003752 8.4850269938306 8.59946895249902 8.56955890872776 7.17168555373965 6.90941115796187 7.48740373146683 7.38796973989264 8.05468111619717 7.72145572033446 7.46115063877687 7.99202487388196 7.69303975143634 7.89387041167487 7.85696728597788 8.1238530410056 7.35651410915857 0.174210473114045 0.169902377218551 0.172502315043499 0.171141209874174 0.169032554009953 0.181391390525032 0.180384132654748 0.173914106285232 0.180678226131547 0.177392857578125 0.169285039293845 0.164671482494313 0.173609950931401 0.171236336701469 0.169116823052345 0.166006490496275 0.175352428925684 0.165590879257375 0.173934057512069 1 1 + 21888809 21889351 21889125.182 21887708 21889714 + gene protein_coding_gene FALSE TRUE AT1G59580.1|AT1G59580.2 ATMPK2 (MITOGEN-ACTIVATED PROTEIN KINASE HOMOLOG 2); MAP kinase/ kinase encodes a mitogen-activated kinase involved in innate immunity Identical to Mitogen-activated protein kinase 2 (EC 2.7.11.24) (MAP kinase 2) (AtMPK2) (MPK2) [Arabidopsis Thaliana] (GB:Q39022;GB:Q9LQ58); similar to ATMPK1 (MITOGEN-ACTIVATED PROTEIN KINASE 1), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G10210.2); similar to double HA-tagged mitogen activated protein kinase 1 [synthetic construct] (GB:ABG54328.1); similar to Mitogen-activated protein kinase homolog NTF3 (P43) (GB:Q40517); similar to double HA-tagged mitogen activated protein kinase 2 [synthetic construct] (GB:ABG54329.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain p38 MAP kinase; (InterPro:IPR008352); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 0.644879480474557 8.13970977096926 2.90409688685434e-05 0.197507629274964 9.16642627857467 15.7769786682098 0.644879480474557 0.0597211872358215
AT2G02370_at 7.2369527067086 7.530538755038 7.77425529950597 7.82303980727298 8.02425475601343 7.92976260781333 6.3077981795656 6.53867462456892 5.13687953208806 4.81955368428031 4.98066308136949 5.03989530086578 5.36807316904514 5.50574979333147 4.74086729277779 5.48554902180405 5.78436059825347 5.05696950013896 4.73298891563853 0.25212919324673 0.253720377536974 0.257504522527266 0.260549081005716 0.256797404755206 0.263750819580252 0.250019240563886 0.250019240563886 0.260818233917046 0.250450837212058 0.251090110130645 0.252548738535928 0.25196774512444 0.252506443449045 0.262343610326612 0.251143625778599 0.263364338362089 0.258294519729956 0.256821465218159 2 2|0 +|/ 622381 623059 622684.222 621154 623343 + gene protein_coding_gene FALSE TRUE AT2G02370.1|AT2G02370.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12450.1); similar to At2g02370/T16F16.16 [Medicago truncatula] (GB:ABD32921.1); contains domain UNCHARACTERIZED (PTHR12677) 0.66656448843856 8.12576236877418 2.94190442082425e-05 0.200049500616049 9.15741415874952 12.4665295989111 0.66656448843856 0.0672034775838747
AT2G04240_at 8.80013507999096 9.19400971812292 9.27876010694873 9.4274046829584 10.3003544667537 10.0586610745666 8.63853183164852 8.75729669945933 8.52130345849055 8.37125587652789 8.91658385135835 8.57779538069372 9.2854411972143 8.89576966710671 8.67386532016753 9.11125698634722 9.17875670991951 8.80186560403578 8.25685583582494 0.125745842334114 0.126498719829586 0.134025201738121 0.127750469002139 0.129940120161278 0.125418123443824 0.128835638871358 0.130269018505046 0.136441842857418 0.130359496311120 0.124489004440541 0.12681252071341 0.125801602194197 0.133361769341008 0.129266889588996 0.124489004440541 0.131490776733628 0.140262790001448 0.139877620749790 2 2 - 1461827 1462267 1462049.364 1461627 1462934 - gene protein_coding_gene FALSE TRUE AT2G04240.1|AT2G04240.2 XERICO; protein binding / zinc ion binding Encodes a small protein with an N-terminal trans-membrane domain and a RING-H2 zinc finger motif located at the C-terminus. Gene expression is induced by salt and osmotic stress. similar to BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G61460.1); similar to putative RING zinc finger protein-like protein [Thellun (GB:AAM19707.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.732915099912843 8.12331892737007 2.94858377473396e-05 0.200474210844162 9.15583304980479 17.9635468224994 0.732915099912843 0.0864846166961076
AT3G58700_at 8.05059240844873 8.3198331214959 7.08715656833429 7.02780744707406 7.03327726799766 7.2686432541322 7.67271442508176 8.03900789224065 7.04928656894719 6.89793228836674 6.59203599023202 6.96322863774856 6.2526603505896 6.09959188676358 6.92264336942576 5.93528168994663 6.3963059637402 6.02589159925836 6.95582651257945 0.199022773825745 0.192733635310340 0.184669609690158 0.182507364254440 0.182697667672912 0.183301663130408 0.184963039686815 0.19059471433573 0.202562931652694 0.182604296305560 0.187899247236457 0.178476517258134 0.178476517258134 0.198955384971956 0.182670064909796 0.180700907585214 0.195810973456779 0.187061526997037 0.182961766892501 3 0|3 /|+ 21723338 21723682 21723551.222 21722540 21723932 + gene protein_coding_gene FALSE TRUE AT3G58700.1 60S ribosomal protein L11 (RPL11B) Identical to 60S ribosomal protein L11-2 (L16) (RPL11D) [Arabidopsis Thaliana] (GB:P42794;GB:P42796;GB:Q42195;GB:Q8LD47;GB:Q9LXT1); Identical to 60S ribosomal protein L11-1 (L16A) (RPL11A) [Arabidopsis Thaliana] (GB:P42795;GB:Q9SJI2); similar to 60S ribosomal protein L11 (RPL11D) [Arabidopsis thaliana] (TAIR:AT5G45775.2); similar to RPL16A (ribosomal protein large subunit 16A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G42740.1); similar to RPL16B (ribosomal protein L16B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G18730.1); similar to ribosomal protein L11-like protein [Solanum tuberosum] (GB:ABB29943.1); similar to ribosomal protein RL5 [Cicer arietinum] (GB:CAD56220.1); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132); contains InterPro domain Mitochondrial ribosomal protein L5; (InterPro:IPR003236) -0.742771340716789 -8.12073377034033 2.95566878155991e-05 0.200926363770443 9.15415949874171 14.2454474110644 -0.742771340716789 0.0891829333330977
AT1G51580_at 5.00229205131702 5.0729648488707 4.12916906372531 4.24602876309586 4.43964703490166 4.60557498505039 5.06821996844539 5.23776932991107 5.70309994987675 5.89948583205222 5.8892974248175 5.50841561537688 5.20061748290085 5.4307265126629 5.44175525217763 5.32867563385525 4.38259815024331 5.00070820118328 5.65307286796785 0.214206772026444 0.208510473385348 0.221879011582943 0.215438199388043 0.209362239723298 0.215621322758858 0.206419697452034 0.206765612904519 0.210050727927261 0.213501838507046 0.210809701074420 0.211665257229490 0.207861169822614 0.208871425955519 0.207360764975499 0.206419697452034 0.216493521518463 0.218230620319187 0.214216865365184 1 1|0 +|/ 19130881 19131740 19131285.889 19129251 19131829 + gene protein_coding_gene FALSE TRUE AT1G51580.1 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G15270.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE93137.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.609621760211401 -8.11248693463518 2.97839656988167e-05 0.202441614854857 9.14881565939135 10.2375760060569 -0.609621760211401 0.0473708193803962
AT1G11050_at 5.5863088371965 6.12678158305992 7.05764624237727 7.6023133304801 7.33490777053901 7.12309700189647 5.27040647444754 5.69924041572521 4.69112771950585 4.75369191795763 4.51102779777058 4.85758427900875 4.74576559503675 5.2141484714309 4.68969823317192 5.93614573399409 5.80011915683827 5.33728856840559 4.60030537514826 0.257757457678153 0.243083432014284 0.253706102395502 0.256902789486888 0.246437532921956 0.256389151294476 0.253536731992034 0.255029166370885 0.257797659039737 0.248435892403372 0.249882863305899 0.248026306278201 0.246806049981057 0.246317600919014 0.251388710049057 0.243083432014284 0.258339646926503 0.243083432014284 0.244319488301247 1 1 + 3683253 3683715 3683474.455 3681888 3684169 + gene protein_coding_gene FALSE TRUE AT1G11050.1 protein kinase family protein similar to RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3), kinase [Arabidopsis thaliana] (TAIR:AT2G48010.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to Os01g0883000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045011.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794) 1.03178532531789 8.0969526338251 3.02173488544765e-05 0.205357102815022 9.13872854775235 11.3841779904624 1.03178532531789 0.156471982591474
AT1G19440_at 5.65370822719566 5.87139984964879 4.58069056283063 4.54360267211521 4.51823335588104 3.88123060128394 7.67580713251669 8.06508504577455 7.02838692566054 6.73583456906662 8.27302899983256 7.4385349881042 7.28900090526355 7.83810192929538 7.46599979711324 6.63616587606112 6.56695126569594 7.4047953593038 6.60717953595734 0.267585148293912 0.263351237569469 0.274162368043377 0.281318229099218 0.274803532969781 0.284926706030940 0.263351237569469 0.263351237569469 0.287383333601620 0.264657006498192 0.269000573555860 0.263351237569469 0.263351237569469 0.268803210753899 0.268125229616402 0.263889088627759 0.273296374139981 0.263351237569469 0.267781539464257 1 1 + 6730075 6730592 6730313 6728975 6730922 + gene protein_coding_gene FALSE TRUE AT1G19440.1 very-long-chain fatty acid condensing enzyme, putative Identical to Probable 3-ketoacyl-CoA synthase 4 (EC 2.3.1.-) (KCS-4) (Very-long- chain fatty acid condensing enzyme 4) (VLCFA condensing enzyme 4) (KCS4) [Arabidopsis Thaliana] (GB:Q9LN49); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to KCS2 (3-ketoacyl-CoA synthase 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G34510.1); similar to beta-ketoacyl-CoA-synthase [Marchantia polymorpha] (GB:AAO48425.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.93097769295033 -8.09630806254927 3.02354814532416e-05 0.205450096474777 9.13830940265986 12.6759893810618 -0.93097769295033 0.134724468130839
AT4G15510_at 5.94604065844926 6.06136633095649 4.76116067237611 4.69140146973713 5.54777956009789 5.12592791933566 7.1513022705145 6.92477837761416 6.21140836634297 6.26552227858842 6.35695838019962 7.0388564198496 5.89607917172203 5.9999746216602 6.89199792564466 6.22579600999426 5.80991821694220 6.03649177546835 6.27089014300522 0.207579501982061 0.209547728096727 0.226129776050432 0.227374422102278 0.206204479965058 0.215441168829294 0.208868487968785 0.206204479965058 0.216719298572747 0.208332215894029 0.210920856635692 0.21336692655459 0.211065273555547 0.228941450451561 0.206204479965058 0.206235337310549 0.206204479965058 0.208615336778988 0.212379213420239 4 4 + 8861386 8862392 8861680.727 8860614 8862663 + gene protein_coding_gene FALSE TRUE AT4G15510.1|AT4G15510.2|AT4G15510.3 photosystem II reaction center PsbP family protein|calcium ion binding Identical to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O23403); similar to CLA1 (CLOROPLASTOS ALTERADOS 1) [Arabidopsis thaliana] (TAIR:AT4G15560.1); similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98971.2); similar to Os12g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067041.1); similar to Os07g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059362.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683)|similar to CLA1 (CLOROPLASTOS ALTERADOS 1) [Arabidopsis thaliana] (TAIR:AT4G15560.1); similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98971.2); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683)|Identical to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O23403); similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT3G55330.1); similar to Thylakoid lumenal 21.5 kDa protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98971.2); similar to Os12g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067041.1); similar to Os07g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059362.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.72828451739533 -8.08841539046195 3.04584905209057e-05 0.206934984599034 9.133173179195 12.0418609879671 -0.72828451739533 0.0860828654877967
AT3G20410_at 7.93162223546779 7.98990246927442 8.09617783261862 8.00360565346625 8.12392357994971 7.96615944674652 6.47568030741364 6.65668736069248 7.00945151208036 6.3018660385913 7.28689491547772 7.39907955041217 7.07127287582699 6.9130150470819 6.80744529243988 6.90312628736769 6.65542316330413 7.24472732702118 6.52580159100118 0.171485480044148 0.167608267098384 0.166497828721813 0.168872621615088 0.165489670445871 0.171441494595633 0.171905158973814 0.174528003494075 0.176825891996641 0.164989473268819 0.17520649259245 0.167305270874252 0.172651558608471 0.177411045589640 0.177062163654645 0.169363619601012 0.176561360564314 0.165870689892763 0.181552218424438 3 0|3 /|+ 7117906 7118625 7118294.375 7116207 7119127 + gene protein_coding_gene FALSE TRUE AT3G20410.1 CPK9 (CALMODULIN-DOMAIN PROTEIN KINASE 9); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 9 (CPK9) similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G50700.1); similar to CPK21 (calcium-dependent protein kinase 21), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G04720.1); similar to CPK15 (calcium-dependent protein kinase 15), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G21940.1); similar to Ca2+-dependent protein kinase [Mesembryanthemum crystallinum] (GB:AAD17800.1); similar to calmodulin-like domain protein kinase isoenzyme gamma [Glycine max] (GB:AAB80693.1); similar to calcium dependent protein kinase 3 [Medicago truncatula] (GB:ABE72958.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.603371772562683 8.0837114122841 3.05922669729836e-05 0.207813269547478 9.13010862911804 14.4792179129990 0.603371772562683 0.0456612753701773
AT1G51940_at 9.5403947337784 9.73140298169913 9.54276085337493 9.46823791541165 10.2440131151375 9.8732310767328 9.21936901316897 9.10834097937677 9.38364612586534 8.81687234440598 10.5588484634305 10.2446166696227 10.2799910706772 10.2057088491883 10.0265670632339 9.43625168100012 9.42892013113487 9.9568536788915 8.85049420161457 0.114817222383480 0.110913010660886 0.119735595284154 0.114219091224550 0.113804314392593 0.115396780022095 0.114218015155277 0.119375567470614 0.122298802574317 0.116091610937804 0.116635438627538 0.110913010660886 0.110913010660886 0.119840221920284 0.114394303007697 0.110913010660886 0.114653044453355 0.115485932230215 0.113056276712806 1 1|0 -|/ 19299771 19300648 19300100.1 19299573 19302787 - gene protein_coding_gene FALSE TRUE AT1G51940.1 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G21630.1); similar to Os01g0741200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044206.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70119.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) 0.691199645046914 8.08191724436 3.06434623551003e-05 0.208130396315841 9.1289390948436 19.1080807960147 0.691199645046914 0.075798014528802
AT2G01250_at 10.6898060808450 10.7345496400982 9.91749806500408 9.92133579008816 10.1387004008333 9.93160003665508 10.8785910568827 10.9572143512223 10.5393837050453 10.1826352371487 9.98855042355022 10.3862437432991 9.85002048010068 9.99967195787729 10.540348943923 9.7133219114630 9.44258881568722 9.85327202179788 10.2124513694785 0.0861064560614033 0.082964011631764 0.0848450217997636 0.0850380241280397 0.0807786467457926 0.0806034545914998 0.0841055159121325 0.0862301156855768 0.0822898920726637 0.0812226479610366 0.0838438241066643 0.0809669832426974 0.0811586279603682 0.0797301805677486 0.08338141276239 0.0828575248418588 0.0867430228209058 0.0831563707545137 0.0829948840123792 2 2|0 -|/ 132980 133953 133435.375 132696 134454 - gene protein_coding_gene FALSE TRUE AT2G01250.1|AT2G01250.2 60S ribosomal protein L7 (RPL7B) Identical to 60S ribosomal protein L7-2 (RPL7B) [Arabidopsis Thaliana] (GB:P60040;GB:O80581;GB:Q42208;GB:Q9ZU42); similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to 60S ribosomal protein L7 (RPL7C) [Arabidopsis thaliana] (TAIR:AT2G44120.2); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998)|similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517) -0.588747262897718 -8.08179762334827 3.06468790274331e-05 0.208130396315841 9.12886110635399 20.5377831232552 -0.588747262897718 0.0391152916957519
AT3G14200_at 5.52542005358746 5.89525843775452 5.76512875181609 6.06578975196665 6.2894273793896 6.37936552457745 5.65591359267051 6.20603097666875 5.07569094015325 5.45753119834239 6.83970247838871 6.49925075335008 6.96958503561727 6.8380402983137 6.60814505204208 6.51658234583713 6.8516320922203 6.4343883546209 5.10138129405479 0.192972488064695 0.189880846231715 0.205816986990675 0.199282886705687 0.202235294311048 0.204804624026626 0.203681119726448 0.195071585865356 0.205341602756719 0.195488150795784 0.191616455473501 0.191253480679931 0.189880846231715 0.19738661135792 0.206026526797598 0.191265580115349 0.203996825798324 0.191855084429509 0.202734047294506 3 0|3 /|- 4712914 4713959 4713230.143 4712581 4714660 - gene protein_coding_gene FALSE TRUE AT3G14200.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G72416.1); similar to Os03g0300600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049859.1); similar to heat shock-like protein [Picea glauca] (GB:AAB01572.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.89370170527455 8.07471974335631 3.08497925347959e-05 0.209470091311264 9.12424366412845 11.9258919479617 0.89370170527455 0.126920639839643
AT1G64770_at 9.47725098380558 9.55655890307792 9.44780434041023 9.4411622860852 9.34681105838737 9.36714089736646 10.9765996617870 10.9048201750328 10.3855327551504 10.4901224094320 10.0256515203256 9.94246012651732 10.1252232484727 10.2326637606990 10.0928221042213 10.5543438089657 9.92409967319363 10.0166151987951 10.3206850311398 0.111134731686799 0.107657040839029 0.11551599140884 0.103318766390083 0.114078350501087 0.118979164960209 0.112084839054151 0.111801643989199 0.118358349649609 0.106135294947596 0.108644275638440 0.106243423529283 0.107739375995896 0.109411197145528 0.106312333283317 0.103318766390083 0.111904370831308 0.114618796929309 0.107762239131561 1 1 + 24061747 24063016 24062293.909 24061102 24063224 + gene protein_coding_gene FALSE TRUE AT1G64770.1|AT1G64770.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55370.2); similar to Os03g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049021.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06836.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013) -0.55631146022772 -8.0735278278471 3.08841090937605e-05 0.209672216637540 9.12346552018793 20.0712760359388 -0.55631146022772 0.018877606759195
AT3G23760_at 5.60025025059974 5.79947147794862 3.9475820644783 3.69163141694629 4.17667612208185 4.58810076406628 5.33386570954246 5.95744922000215 4.78223578250785 5.30630667132121 4.88508649058242 5.37928995800106 4.78684037914243 4.3643817023825 5.34611314425818 4.29249810552157 4.28324204718793 4.51703684122737 5.12950500395649 0.270675353537126 0.273513069483854 0.271430209158570 0.26955966995475 0.266123554129586 0.280444241684953 0.266123554129586 0.271780184245731 0.275871821644895 0.272293904203226 0.266123554129586 0.267195558849537 0.266123554129586 0.277968773673762 0.273273993272345 0.266123554129586 0.276844379659163 0.275886359845558 0.266123554129586 3 3|0 -|/ 8562997 8564580 8564194.3 8562836 8564677 - gene protein_coding_gene FALSE TRUE AT3G23760.1 similar to transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G14100.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80211.1); contains domain Cystatin/monellin (SSF54403) -0.956316487510322 -8.07118579630083 3.09516617648357e-05 0.210099880059704 9.12193604530635 9.78912516294144 -0.956316487510322 0.140944122279733
AT4G39980_at 10.5005449784896 10.3255304940396 11.1138259540495 10.9903717941388 10.2060611042140 10.1346900364486 9.70584112196936 9.65774104977864 9.7298331914738 9.63766969194404 10.3211326480053 10.5519094331360 9.94499434198594 10.0492872715658 10.3807443795689 10.1030689397160 9.80622565259363 10.0731789287733 9.24819586757205 0.0736811068604226 0.0735576287215848 0.0754348483970403 0.0746788367576869 0.0735576287215848 0.0797556624817802 0.0750532822635942 0.0757101920043 0.0804871421342627 0.0761253925577838 0.0748602110309588 0.0736081202967018 0.0757825847349304 0.0738687555633262 0.0755682174956261 0.0735576287215848 0.0795227912366566 0.0750243982810589 0.0826017830680705 4 4 + 18540853 18541800 18541479.727 18539570 18542087 + gene protein_coding_gene FALSE TRUE AT4G39980.1 DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1); 3-deoxy-7-phosphoheptulonate synthase Encodes a 2-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase, which catalyzes the first committed step in aromatic amino acid biosynthesis. Gene expression is induced by wounding and pathogenic bacteria Pseudomonas syringae. Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 1, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 1) (DAHP synthetase 1) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 1) (DHS1) [Arabidopsis Thaliana] (GB:P29976;GB:Q9SMQ7); similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G33510.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G22410.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] (GB:CAA75386.1); similar to 3-deoxy-D-arabino-heptulosonate y-phosphate synthase (GB:AAA32784.1); similar to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (GB:P37822); contains InterPro domain DAHP synthetase, class II; (InterPro:IPR002480); contains InterPro domain Calycin-like; (InterPro:IPR011038) 0.589537130115782 8.0689348138846 3.10167422373679e-05 0.210510629565016 9.12046543586326 20.1755177915150 0.589537130115782 0.0399446923847877
AT3G46000_at 10.6937259809578 10.8676213627523 11.3613326385539 11.2933133957234 11.4547770941155 11.1833105901557 10.7554271621706 10.7322982043419 10.6872989586779 10.5524385659307 11.5145571749064 11.0320995686750 11.2961890210932 11.2628402429060 11.0720063433242 11.1250339743677 11.2147085462526 11.1687107438116 10.2838861520849 0.0854835231603656 0.0860809188388168 0.0891413564631636 0.0866695847336031 0.0863972537426969 0.0910751788115484 0.085711420932886 0.0858299059934637 0.101292785611560 0.0867091797327764 0.0854835231603656 0.0854835231603656 0.0880031267929012 0.0933180779571323 0.0886953435437135 0.0858782528680824 0.0854835231603656 0.09035501832611 0.0875852900673726 3 3 - 16918728 16919195 16918971.909 16918466 16919984 - gene protein_coding_gene FALSE TRUE AT3G46000.1 ADF2 (ACTIN DEPOLYMERIZING FACTOR 2); actin binding Encodes depolymerizing factor 2. Identical to Actin-depolymerizing factor 2 (ADF-2) (AtADF2) (ADF2) [Arabidopsis Thaliana] (GB:Q39251;GB:Q9LZT2); similar to ADF4 (ACTIN DEPOLYMERIZING FACTOR 4), actin binding [Arabidopsis thaliana] (TAIR:AT5G59890.1); similar to Actin-depolymerizing factor 2 (ADF 2) (GB:Q9FVI1); similar to actin-depolymerizing factor [Platanus x acerifolia] (GB:CAL25339.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.631904447550355 8.06811616819653 3.10404484509406e-05 0.210640483188083 9.11993045455177 21.9020471840038 0.631904447550355 0.0571592069280542
AT1G56600_at 8.76954914980202 8.67453504670492 10.2341896860271 10.1946197421972 10.5731134854053 10.3179774539848 9.87846062479205 9.94596436020088 6.63483852979978 8.12814247044177 7.36160384425785 5.00847751794794 9.2704363120787 8.56009622410158 6.30013968948032 8.20165743581099 10.2962137604269 8.7054798853666 8.5049438513291 0.172941575973914 0.173833111138787 0.174324444852124 0.172657559382664 0.178431263772089 0.180215716324215 0.173497538822715 0.173269007866239 0.184471883255522 0.183618445224118 0.186427088196897 0.201142924253671 0.172636621175623 0.178332016888096 0.208766671120776 0.18106890256837 0.173330528925340 0.183247104187589 0.178151978862965 1 1|0 +|/ 21211936 21212928 21212308.8 21211202 21213261 + gene protein_coding_gene FALSE TRUE AT1G56600.1 ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G09350.1); similar to galactinol synthase-like protein [Thellun (GB:AAM19710.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.609942964844465 8.06282772702611 3.11940738353119e-05 0.211651790972591 9.11647262264828 17.6830452107430 0.609942964844465 0.0490220242873963
AT3G49810_at 3.79928648477301 4.51606245495667 3.52779748457606 3.60255206182146 3.76321257140512 4.01510389451154 6.2902528786327 6.44482586897957 5.18435569410405 5.3361804141932 5.86372907306541 6.30704630843612 4.87892095402556 5.73939351168221 4.6577916434212 5.0933885949843 4.66924707535647 5.28654443414929 6.37137370329191 0.26107136904606 0.252109043595558 0.252846096868281 0.262931667736885 0.249054932853738 0.267679251091076 0.257954474700571 0.262184879098182 0.268505482958727 0.262802075813624 0.255726192320900 0.248693154048543 0.257417580216992 0.263763186821499 0.261349464533742 0.247979944025456 0.262372446648336 0.262027925507169 0.247832262927258 3 3 - 18485993 18486370 18486148.636 18485522 18487819 - gene protein_coding_gene FALSE TRUE AT3G49810.1 U-box domain-containing protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65920.1); similar to U-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94807.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.927034661614965 -8.05930919888527 3.12967501406459e-05 0.212317152954142 9.11417025838757 9.96620886408358 -0.927034661614965 0.134793708046515
AT3G21190_at 4.47189184663499 5.11511135929838 2.96864166305945 3.63791494026182 2.98624215408263 3.35335112264542 6.77020409333313 7.27672802106624 5.68928104600876 6.34503689081297 6.7225684773305 7.58362642974139 6.09048377683778 6.29225001845235 7.26243281097739 6.36955760693361 5.5115341812307 6.35394957476754 6.7610771006006 0.270788201396255 0.262317750875684 0.273690982240866 0.282800622471600 0.276122515337044 0.284041532955297 0.262317750875684 0.262442357619013 0.268307355786526 0.267825058903859 0.262317750875684 0.262317750875684 0.262317750875684 0.273963987898761 0.266364756756301 0.262317750875684 0.262317750875684 0.266606849707381 0.262317750875684 3 3 - 7432591 7433163 7432842.182 7432305 7434671 - gene protein_coding_gene FALSE TRUE AT3G21190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51630.1); similar to Os09g0498800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063569.1); similar to unknown [Flaveria brownii] (GB:AAW56451.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -1.20688883983886 -8.05511471616668 3.14196403842289e-05 0.213119420726225 9.11142371532817 10.9667266693851 -1.20688883983886 0.193712535154353
AT3G28180_at 6.4287674170989 7.28554622688228 3.17738375173464 3.48536072408492 4.83397258977966 4.68034361117218 6.62940412795118 6.50594894200985 8.20205848585303 6.82971140478898 9.27715204462259 9.14098058735808 7.79864611878915 8.4775855074824 9.01622713847895 7.71527222822694 4.88035414661788 8.0992444301449 7.39894632285124 0.293666386308121 0.281897582938014 0.314856142220789 0.298618028823009 0.281421870787449 0.310300876460664 0.285262344271820 0.283643968596984 0.294382888176218 0.285525089039372 0.286757786344286 0.284793055516390 0.275865548977025 0.284205559266803 0.292641074620100 0.281620597800775 0.313619570821939 0.299436387880889 0.282618799415115 3 3 + 10509710 10510247 10509999.091 10507066 10510476 + gene protein_coding_gene FALSE TRUE AT3G28180.1 ATCSLC04 (Cellulose synthase-like C4); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC05 (Cellulose synthase-like C5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G31590.1); similar to putative glucosyltransferase [Cicer arietinum] (GB:CAB88664.1); similar to TPA: TPA_exp: cellulose synthase-like C3 [Oryza sativa (japonica cultivar-group)] (GB:DAA01751.1); similar to TPA: TPA_exp: cellulose synthase-like C2 [Oryza sativa (indica cultivar-group)] (GB:DAA01750.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -1.04718706928767 -8.04233667017491 3.17973125202677e-05 0.215649373512456 9.10304414559453 13.1421350136956 -1.04718706928767 0.161206971726422
AT1G79720_at 5.29093451794022 6.21917684791299 3.75634217181083 3.91701747821137 5.55365204047028 5.22571498917236 6.79025543523333 6.62004977964901 7.43231279026973 7.11179026042868 7.30834786900092 7.13169731242128 6.32342735518353 6.89470999560189 7.28398461777398 6.49795753931725 4.51824014459428 6.84230279774256 7.08349796104352 0.239973306497263 0.233831108899386 0.268358313392908 0.268265535632668 0.235700286690346 0.243611003123324 0.230353607832272 0.238537422159032 0.255326082228203 0.235662169678255 0.233441565325326 0.230353607832272 0.245030631711761 0.262737304160026 0.236340934029744 0.240633309872456 0.275976070588292 0.243407156346729 0.234452651733867 1 1 - 30002271 30002720 30002499.545 30002020 30003938 - gene protein_coding_gene FALSE TRUE AT1G79720.1 aspartyl protease family protein similar to chloroplast nucleoid DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G10770.1); similar to Os09g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063212.1); similar to 41 kD chloroplast nucleoid DNA binding protein (CND41) [Nicotiana sylvestris] (GB:BAC22609.1); similar to Os08g0267300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061407.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -1.11301967928026 -8.0362495287939 3.19789886900304e-05 0.216849522307096 9.09904569036691 12.3262848031509 -1.11301967928026 0.175115847804963
AT1G32900_at 7.91902883041605 7.76386511898353 8.75393747363804 8.83308482779718 7.7393679891823 8.29866223423186 10.9357130314257 11.3767263623170 9.69847252407706 10.5604286579615 9.1065976933222 9.86032919541922 9.80563688144386 9.46349760056032 8.87959579231217 10.6398096877986 9.87051737105668 9.18386984811568 10.6000174902245 0.133353235656137 0.124964967087465 0.121492897606248 0.132145078501469 0.125461430945922 0.128608607772962 0.124705580830644 0.118690743014874 0.124825030451887 0.120910467321371 0.128119868916215 0.119228264169357 0.120210016642680 0.123263821207016 0.125183619085328 0.121140362742437 0.121259731200015 0.127215433829406 0.121817404095679 1 1|0 -|/ 11920584 11921173 11920969.9 11920370 11923746 - gene protein_coding_gene FALSE TRUE AT1G32900.1 starch synthase, putative Identical to Probable granule-bound starch synthase 1, chloroplast precursor (EC 2.4.1.242) (Granule-bound starch synthase I) (GBSS-I) (WAXY) [Arabidopsis Thaliana] (GB:Q9MAQ0); similar to glycogen synthase, putative [Arabidopsis thaliana] (TAIR:AT3G01180.1); similar to Granule-bound starch synthase 1, chloroplast precursor (Granule-bound starch synthase I) (GBSS-I) (GB:Q00775); similar to granule-bound starch synthase (GB:1718316A); similar to starch (bacterial glycogen) synthase [Solanum tuberosum] (GB:CAA58220.1); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.888822334953666 -8.03181501561453 3.21120631692213e-05 0.217719788287320 9.09613009461504 18.8963172249196 -0.888822334953666 0.126890836996304
AT3G62150_at 5.98766362430121 6.22276350188286 5.66998922054696 5.62064114932419 7.48178391365832 7.10729208815282 2.90343107685329 3.04699002725071 6.08076833745367 4.78041470526697 5.36643704485969 5.08998782950292 4.94466495457024 5.548284532714 4.60981964099611 5.16635212412289 3.95168882824685 4.7009407942547 5.47020011647555 0.232713558871645 0.224588118380796 0.223742297969959 0.226191650582673 0.239589968659259 0.235427921602834 0.240531505299959 0.236580656291423 0.227134326657788 0.223937943627953 0.228592887249987 0.226460970596169 0.224009241697204 0.228188117867982 0.223742297969959 0.228463431297785 0.228351230046311 0.223742297969959 0.223742297969959 3 3 - 23019735 23020453 23020144.091 23019730 23024554 - gene protein_coding_gene FALSE TRUE AT3G62150.1 PGP21 (P-GLYCOPROTEIN 21); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 17 (P-glycoprotein 21) (MDR17) [Arabidopsis Thaliana] (GB:Q9M1Q9); similar to PGP11 (P-GLYCOPROTEIN 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02520.1); similar to PGP4 (P-GLYCOPROTEIN 4, P-GLYCOPROTEIN4), ATPase, coupled to transmembrane movement of substances / xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G47000.1); similar to PGP12 (P-GLYCOPROTEIN 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G02530.1); similar to CjMDR1 [Coptis japonica] (GB:BAB62040.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE92210.1); similar to putative CjMDR1 [Oryza sativa (japonica cultivar-group)] (GB:BAA96612.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.704096058804124 8.02630569269304 3.22782448454900e-05 0.218814221807577 9.09250466037403 10.6881025027749 0.704096058804124 0.0809038390121737
AT3G13860_at 6.93926444477064 7.23163061614473 6.66307012198642 6.9398955780761 6.03793621341855 6.38862113954159 7.19707780561505 7.63805899345718 6.94321156258704 6.37337155485203 5.1495623706616 5.58923222782162 5.35809700295861 5.4395736826814 6.36275459777561 5.83933105745446 6.2868943672088 5.64510602096344 6.72150426492566 0.181365088080649 0.185217504028373 0.182756165034500 0.184002462271313 0.177532419924743 0.180155700393876 0.188767512991901 0.182993246894744 0.177800584753287 0.181534413762073 0.182292241137158 0.181307880078745 0.18123946427847 0.179779877345990 0.182279073889526 0.177532419924743 0.183156228857192 0.182560061788612 0.178143620858987 3 3|0 -|/ 4561717 4562640 4562178.429 4561524 4565286 - gene protein_coding_gene FALSE TRUE AT3G13860.1 chaperonin, putative Identical to Chaperonin CPN60-like 2, mitochondrial precursor (HSP60-like 2) [Arabidopsis Thaliana] (GB:Q93ZM7;GB:Q9LRW0); similar to HSP60 (Heat shock protein 60), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G23990.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT2G33210.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE79780.1); similar to Chaperonin CPN60-1, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54159.2); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.857335373294393 -8.02343128415802 3.23653249271343e-05 0.219372172356117 9.09061174563920 13.0735350524907 -0.857335373294393 0.119840153113704
AT1G12110_at 9.72630269412513 10.0433403978206 8.30789613760165 8.51299942486938 8.32396988155424 8.18997401611578 9.61292245693872 9.84357707967495 9.53976195753222 9.6317020805653 9.72251601199789 9.84304549928585 9.30434795901027 9.4498111057181 9.86241626966263 9.7744438952228 8.992634661208 9.6933659473752 9.35498730908753 0.113138740102500 0.111848547360473 0.122357377987637 0.123528591451154 0.118410290835631 0.124611170453487 0.111319555980336 0.109605932766023 0.120712566762970 0.110789004324786 0.113892315975806 0.109605932766023 0.116023826025431 0.118960906981172 0.111716891941607 0.112204304157868 0.121223634695687 0.112188116684886 0.114172207630141 1 1 + 4108736 4109184 4108955.091 4105235 4109543 + gene protein_coding_gene FALSE TRUE AT1G12110.1 NRT1.1 (nitrate transporter 1.1); transporter Encodes NRT1.1 (CHL1), a dual-affinity nitrate transporter. The protein is expressed in guard cells and function in stomatal opening. Mutants have less transpiration and are more tolerant to drought. Identical to Nitrate/chlorate transporter (CHL1) [Arabidopsis Thaliana] (GB:Q05085); similar to nitrate transporter (NTP2) [Arabidopsis thaliana] (TAIR:AT2G26690.1); similar to nitrate transporter [Nicotiana tabacum] (GB:BAC56915.1); similar to nitrate transporter [Brassica napus] (GB:CAC07206.1); similar to RCH2 protein (GB:AAA80582.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.700660119573928 -8.02308181597797 3.23759297447193e-05 0.219411675879963 9.0903815412798 18.6146926532943 -0.700660119573928 0.0800060573228041
AT1G11790_at 5.59355191499538 5.79856910648456 4.40750638524919 4.3172887174192 4.23541058800168 4.64677656929659 6.97925928659074 6.8438624139592 5.22396421975543 5.82358065581091 6.24168562124426 6.68452415303489 5.76521374106374 5.45596013731619 6.96919847577471 5.67463357675262 5.40597180767099 6.12787683033299 5.66496728311899 0.187186162366252 0.194838553155432 0.193114900369064 0.19969804597768 0.197599417930160 0.197074725434835 0.190248307696403 0.189157173333367 0.191645741719126 0.187186162366252 0.202190307358161 0.187186162366252 0.197701248498411 0.206595447872111 0.189918816284554 0.19089631463583 0.195371888514541 0.194748093636789 0.189968549564397 1 1|0 +|/ 3983717 3984922 3984378.556 3981247 3985214 + gene protein_coding_gene FALSE TRUE AT1G11790.1|AT1G11790.2 prephenate dehydratase family protein|prephenate dehydratase similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT3G07630.2); similar to Prephenate dehydratase with ACT re (GB:ABE89101.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912)|similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT3G07630.2); similar to Prephenate dehydratase with ACT re (GB:ABE89101.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) -0.716134729422724 -8.02230972869602 3.23993728080099e-05 0.219538150147075 9.08987289576663 11.1585133373132 -0.716134729422724 0.0843764496930884
AT1G59990_at 5.99857985469573 5.93165082225997 5.8808080328291 5.46423207082618 5.1890672801668 4.53524197923152 6.57318716512966 6.0479079823055 5.43306176045739 6.13225892033832 4.41026039431949 4.56041865801841 4.90736712644838 4.34632241258403 5.03412812295878 5.26835422998956 5.10374817140708 4.01582828911132 6.23835804642545 0.206398654515482 0.202508905693434 0.200290671640346 0.200290671640346 0.205875977413904 0.207461479428989 0.201094320561639 0.200290671640346 0.206586149952149 0.200290671640346 0.219956938749161 0.200290671640346 0.206404057662534 0.212962969031770 0.205553121014960 0.200290671640346 0.214090051375245 0.202847290336324 0.201930989184456 1 0|1 /|- 22094392 22094709 22094537.5 22093903 22096725 - gene protein_coding_gene FALSE TRUE AT1G59990.1 DEAD/DEAH box helicase, putative (RH22) Identical to DEAD-box ATP-dependent RNA helicase 22 (EC 3.6.1.-) (RH22) [Arabidopsis Thaliana] (GB:Q944S1;GB:O24597;GB:Q9ZNU1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G33730.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE90184.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -1.04962513273503 -8.01514867507954 3.26177018806317e-05 0.22098493024128 9.08515194659164 11.0227658991031 -1.04962513273503 0.162470661396872
AT4G34180_at 10.4798967929337 10.6990193117188 11.0462526830755 11.0846565279444 10.8037846902195 10.8694572395467 9.54211188700792 9.74707576461432 9.535795395487 9.54581636827285 10.0122200194150 9.85997325583595 9.65307166480377 9.98731422205492 9.67687930527732 9.7750324739769 9.8150011824684 10.1049329229739 9.2957895683108 0.103342444879542 0.101493666423526 0.102496727946192 0.101493666423526 0.104521670358121 0.105817404754884 0.105021089752320 0.105030442284402 0.110403134035735 0.10724176990492 0.101493666423526 0.102619500517613 0.105157019426782 0.107297794178953 0.103802812393818 0.102512631163070 0.111959155255389 0.1024936964805 0.104391561816458 4 4|0 -|/ 16370105 16371181 16370726.2 16369361 16371434 - gene protein_coding_gene FALSE TRUE AT4G34180.1 cyclase family protein similar to cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G44542.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC92446.1); similar to Os08g0319900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061523.1); contains InterPro domain Putative cyclase; (InterPro:IPR007325) 0.61771559981087 8.01163331343358 3.27254743832801e-05 0.221682363472339 9.08283225138234 20.1938753162364 0.61771559981087 0.053566668852185
AT3G01810_at 6.933120612895 7.53045285522146 6.16284886540035 5.84487059959722 6.38776821041024 6.58322633715744 8.56755566972203 8.84853147380896 7.39219117667175 8.46004638341218 8.0406730955273 8.2478752496088 7.52077389432389 8.06384081084726 7.79684155190757 7.9285323217866 7.34497339876256 7.7778317525245 7.921972288772 0.217707107461609 0.201885324417767 0.214770870429759 0.230798634630546 0.210478480375577 0.217526727249063 0.206842841855003 0.200862111593428 0.221996454367050 0.212228036178616 0.213706456893115 0.201431677883540 0.207924773347214 0.211436225551134 0.201419517493011 0.204739119798981 0.214641620777934 0.201393692559949 0.206657351146285 3 3|0 +|/ 291807 292518 292179.7 288580 292762 + gene protein_coding_gene FALSE TRUE AT3G01810.1|AT3G01810.2 similar to nucleolar protein gar2-related [Arabidopsis thaliana] (TAIR:AT2G42320.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96901.1) -0.904902753322398 -8.004546167483 3.29439479289202e-05 0.223129359322576 9.07815125774605 14.9897490158748 -0.904902753322398 0.131232871610104
AT3G56340_at 10.6400164624971 10.5845201717457 10.041385079826 9.97486976520976 9.9659622939076 10.0673244882295 10.7578798500092 10.7580911269382 10.1295488753858 10.2620360915736 9.6350359529345 10.0885483616507 9.62810828137049 9.4529821795302 10.5165754223794 9.4213147039179 9.57528903491292 9.63244529414689 10.1578424538634 0.0748730095540316 0.0757036485698969 0.0742293139556308 0.077274885155257 0.0742285066098774 0.0761849535500291 0.076252614227509 0.0780989562054802 0.086765991662516 0.0740874165675741 0.080467042297875 0.0769671200474218 0.0754365301515123 0.0875768389521217 0.0808070826296545 0.0765287581400868 0.0759392375568082 0.0770797550857845 0.0745177737574767 3 3|0 -|/ 20903328 20904181 20903857.444 20903108 20904422 - gene protein_coding_gene FALSE TRUE AT3G56340.1 40S ribosomal protein S26 (RPS26C) Identical to 40S ribosomal protein S26-3 (RPS26C) [Arabidopsis Thaliana] (GB:Q9LYK9); similar to 40S ribosomal protein S26 (RPS26B) [Arabidopsis thaliana] (TAIR:AT2G40590.1); similar to ribosomal protein S26 [Pisum sativum] (GB:AAD47346.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Ribosomal protein S26E; (InterPro:IPR000892) -0.556048282878282 -7.99938465601153 3.31040750803426e-05 0.22418079644408 9.07473844611475 20.3122210935269 -0.556048282878282 0.0230744007842150
AT3G50930_at 7.22197913442459 8.19100781110277 9.78930804796066 10.0129429822104 6.84613977242644 7.33126008206289 2.92920552996780 3.49886717439781 5.23876359427193 4.54905426911986 3.93827333959775 4.18400069033084 3.63623008608799 3.96178433961172 4.47399989359137 4.50812967212157 4.42101505576913 4.55202246153323 4.10887918175834 0.267809280604073 0.262502361040923 0.278971164510890 0.277971327363903 0.288320756873718 0.269049312719940 0.261234660357713 0.258054210950358 0.262304825704072 0.259585660298072 0.259700857634234 0.254538398988233 0.258388699423899 0.255249783118288 0.254538398988233 0.254915393659566 0.256616898985191 0.254538398988233 0.254538398988233 3 3 + 18941956 18942439 18942132.273 18940507 18942820 + gene protein_coding_gene FALSE TRUE AT3G50930.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G50940.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84083.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 1.30592370131947 7.9968035663545 3.31844715403443e-05 0.224692056799671 9.07303065468665 11.3984209621761 1.30592370131947 0.215373830379742
AT1G60690_at 4.97613930508292 5.10918126440683 4.60388561308491 4.36374042392273 5.4690931490434 5.77145039811121 7.09024556840827 7.10034297533234 5.08857368874537 6.92841307526538 5.5941298282022 5.93090628969061 5.8374812683408 6.08462475990891 5.70976560305968 5.57348183063843 6.1573467723947 5.70274355273605 6.40210027776764 0.234292773214170 0.241186797929274 0.249913235080746 0.255336306927893 0.230950662425996 0.250298977609755 0.239755153427257 0.230950662425996 0.245922309764767 0.237582961384227 0.23730470688347 0.233348203251973 0.233059098385554 0.233346638550184 0.234648799802087 0.230950662425996 0.236527692914429 0.23868554000249 0.237727240454503 1 1 - 22353557 22354277 22353926 22353557 22355333 - gene protein_coding_gene FALSE TRUE AT1G60690.1 aldo/keto reductase family protein similar to ATB2, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G60710.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.6664102873692 -7.9888354543361 3.34340290686694e-05 0.226348376794892 9.06775360759173 11.5422626715312 -0.6664102873692 0.0706969580478567
AT1G17140_at 4.53711368507867 4.64119683018828 2.9749573882613 2.63851077031991 3.85361776670695 4.1539646221376 4.9307944798526 5.05620598849612 6.07275090443705 6.48467091756308 6.85483884014577 7.49352913122984 6.08300579788888 5.95693823722756 7.17870561485472 6.66038246703353 5.10705624701334 6.50280675551518 6.9719903939533 0.275506190404417 0.269021392415422 0.280841548515205 0.297829545569542 0.268098250578654 0.270804468646985 0.269566367829978 0.272439670745226 0.280900069743587 0.272065249043185 0.268098250578654 0.272287407518481 0.272724009578078 0.298213394079156 0.273222453118944 0.269546894059325 0.272815193971659 0.275419315938809 0.274121006334028 1 1 - 5856825 5857225 5856961.364 5856566 5858543 - gene protein_coding_gene FALSE TRUE AT1G17140.1|AT1G17140.2 tropomyosin-related Identical to Uncharacterized protein At1g17140 [Arabidopsis Thaliana] (GB:Q8LE98); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78430.1); similar to myosin heavy chain-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72652.1); contains domain STRUCTURAL MAINTENANCE OF CHROMOSOMES 5,6 (SMC5, SMC6) (PTHR19306); contains domain no description (G3D.1.10.287.40); contains domain STRUCTURAL MAINTENANCE OF CHROMOSOMES 6 SMC6 (PTHR19306:SF2) -0.708105647334177 -7.9880285985773 3.34594148539948e-05 0.226486779146691 9.06721883728974 10.5930261705542 -0.708105647334177 0.0829879500023175
AT3G04720_at 10.2027045292993 10.3392560050461 10.5868487977437 10.7009661252591 10.0142140745877 9.84245518640204 3.99371082834149 3.03425910822501 8.49097107068065 7.89740866251845 6.54723918286047 7.35044626619379 5.99471828746735 7.5422920705454 6.60106619874748 6.81496101406402 6.8625630638801 7.54912686490005 7.98666405859565 0.269508396578334 0.266143685636921 0.271853915659113 0.270480736982215 0.269427620840574 0.265961901188897 0.286546840900738 0.278307422784387 0.265406464841622 0.258485220912245 0.266860837730004 0.258045150222778 0.267252807859199 0.255018036724775 0.254929618512087 0.254929618512087 0.268951529899854 0.264219405402519 0.257721221658024 3 3 - 1285705 1286474 1286097.273 1285571 1286568 - gene protein_coding_gene FALSE TRUE AT3G04720.1 PR4 (PATHOGENESIS-RELATED 4) Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection. Identical to Hevein-like protein precursor (HEL) [Arabidopsis Thaliana] (GB:P43082); similar to ATHCHIB (BASIC CHITINASE), chitinase [Arabidopsis thaliana] (TAIR:AT3G12500.1); similar to hevein-like protein [Eutrema wasabi] (GB:BAC16357.1); contains InterPro domain Barwin; (InterPro:IPR001153); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Chitin-binding, type 1; (InterPro:IPR001002) 1.08821272479379 7.98351846365412 3.36017084255293e-05 0.227416362623982 9.06422819514805 16.1057099397867 1.08821272479379 0.171465455796082
AT1G10370_at 3.88512709642586 3.92350852304838 4.37560292807265 4.54196576760091 5.54170360148843 5.1238304916106 9.54527851232617 9.7256361960631 7.19255450187394 8.34142036247765 8.33441085047343 8.31201978890636 7.83715927724888 8.07179268417534 8.30343457557218 8.01281986851533 7.739332506021 7.66917821238896 7.21902256462604 0.227267621217348 0.221609302313551 0.223497363081626 0.223753156303251 0.216328457544543 0.223069604382998 0.232017576294497 0.238910904867580 0.232217975468472 0.214347665272876 0.224455033581078 0.215823638480148 0.213371595444530 0.217268735923895 0.219964193615186 0.211593708746924 0.221492848321611 0.214097607787189 0.211593708746924 1 1 - 3397468 3398231 3398008.364 3397083 3398359 - gene protein_coding_gene FALSE TRUE AT1G10370.1 ATGSTU17/ERD9/GST30/GST30B (EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B); glutathione transferase similar to ATGSTU18 (GLUTATHIONE S-TRANSFERASE 29), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G10360.1); similar to glutathione S-transferase 1 [Papaver somniferum] (GB:AAF22517.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.711712945342961 -7.98299094136384 3.36183952602401e-05 0.227495680726045 9.06387824308691 13.6425071129488 -0.711712945342961 0.084122468089146
AT1G21680_at 11.2307818985667 11.3634880515233 11.6673596997423 11.5809687791586 11.619381566645 11.7094934198497 10.1960311179547 10.5606302019913 9.99013972519811 9.89261758404526 9.9744031311228 10.0565715882631 10.5770392945964 10.4796579730387 10.1489822310222 10.4887184033911 10.7320636111591 10.5907792866886 9.68794542871617 0.091178162377273 0.0911463700378427 0.0946074954513747 0.094021879335083 0.0932483237972789 0.091475650369809 0.0926342704559677 0.0895979776067973 0.097826734095734 0.0944158312242223 0.0900111622801144 0.0940217679169385 0.089775547054923 0.0914664225448079 0.0887401787681532 0.0893405129870672 0.0927192184432066 0.0928264860491807 0.0948074435237672 1 1 + 7614557 7615090 7614831.636 7612994 7615328 + gene protein_coding_gene FALSE TRUE AT1G21680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21670.1); similar to WD40 domain protein beta Propeller [Solibacter usitatus Ellin6076] (GB:YP_828764.1); similar to Os03g0840200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051846.1); similar to Os07g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060406.1); contains InterPro domain TolB, C-terminal; (InterPro:IPR011042); contains InterPro domain WD40-like Beta Propeller; (InterPro:IPR011659) 0.665347038048504 7.98234801437739 3.36387450164304e-05 0.227599748781168 9.06345168890843 21.3599807682107 0.665347038048504 0.0705347866330492
AT1G12400_at 5.80634799962202 6.34660954484952 6.83413138869911 7.10243052201758 6.76421380569316 6.55597890190601 6.22243973625828 5.85272648052823 4.86045930050369 4.75602707172077 5.82403468162917 5.71953521163934 5.91286401859766 6.13967290565107 5.40348224362999 6.1063198227268 6.28018097294228 5.4161608644667 4.88682040156725 0.226645519452089 0.218654438521138 0.216328573217800 0.225839450755843 0.225250961884487 0.216721689982924 0.220933188142937 0.226400165893236 0.252464482175536 0.224902764231546 0.222256086590419 0.217194969970413 0.219491052029364 0.219602827629657 0.218009226812049 0.220972325156753 0.226188709699575 0.223593317299772 0.222077270741055 1 0|1 /|+ 4222464 4222574 4222513 4221861 4222835 + gene protein_coding_gene FALSE TRUE AT1G12400.1 similar to Os07g0573600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060068.1); similar to novel protein similar to vertebrate TFIIH basal transcription factor complex TTDA subunit (C6orf175) [Danio rerio] (GB:CAI20614.1); similar to Os05g0198700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054876.1); contains InterPro domain REX1 DNA Repair; (InterPro:IPR009400) 0.886501731580462 7.98173871356866 3.36580430119851e-05 0.227696660976079 9.06304739961965 11.7779682631589 0.886501731580462 0.127629032250427
AT4G30450_at 6.86008580166966 7.70039587502717 5.37477241527328 5.54171833600853 6.10276918434583 5.72950966204599 8.14955485647033 8.60476313210663 7.257874849049 6.8882055299202 6.33586252871313 7.6963796135818 7.44998921334829 7.55818688218907 7.22595377184821 7.78779680044834 6.97882100706534 5.77979347510399 7.50365252245503 0.214467004941168 0.210280086023512 0.250113648307998 0.216635914354057 0.213072800737598 0.237020080253712 0.215321377590613 0.215562531195435 0.216556303131234 0.212434559578178 0.209081546620045 0.212080387350337 0.208828236629033 0.21556782130171 0.211724323627057 0.210417304426557 0.215693163995818 0.217373141643637 0.208854306443596 4 4 - 14886318 14886587 14886433.909 14886033 14886681 - gene protein_coding_gene FALSE TRUE AT4G30450.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30460.1); similar to Os09g0425200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063219.1); similar to putative cell-wall protein [Pinus taeda] (GB:AAW59296.1) -1.12824361958542 -7.98008667680842 3.3710428514145e-05 0.228017338469677 9.061951005357 13.9170339305411 -1.12824361958542 0.179887738848937
AT4G39050_at 6.57958155660073 6.55976841144339 5.3872456240378 5.13722234854701 6.71636936435498 6.59141725044415 7.35615237200995 6.98316027585922 7.98888112652378 7.92234797799756 8.34233749619585 7.98533654274244 7.21062113031786 7.46966594360605 7.67951678595385 7.51872165250853 6.57948459211035 7.86989929095714 8.29552548603911 0.228152214320936 0.221414883665650 0.221670911185068 0.220763708734969 0.208715149808546 0.216931463502488 0.208715149808546 0.219802731042650 0.220866160477093 0.208715149808546 0.208715149808546 0.208715149808546 0.213988425120014 0.222901776370257 0.213886326976259 0.208715149808546 0.221306616160130 0.210670930960341 0.208715149808546 4 4|0 +|/ 18199561 18199881 18199663 18193129 18200691 + gene protein_coding_gene FALSE TRUE AT4G39050.1 kinesin-related protein (MKRP2) similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G21380.1); similar to kinesin-related protein (MKRP1) [Arabidopsis thaliana] (TAIR:AT1G21730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13527.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.699286137343406 -7.97828101472581 3.37677885221912e-05 0.228371553775579 9.06075229049208 14.2392977134884 -0.699286137343406 0.080733354773946
AT1G66540_at 3.92229032888963 3.91735212707939 3.80807621928786 3.83387805482906 3.4428519270055 3.95894401353004 5.92330628177241 5.98188244509545 4.68366819247571 5.53391699522762 3.88294677428346 4.1373747157892 4.72770929077392 5.09874338237613 4.32972059954685 5.80227627128935 6.0829645034781 5.04657008027133 5.31761778514571 0.212412214435538 0.208150397128303 0.219993532237914 0.214761395494003 0.212102542224048 0.216800708887898 0.213920941414393 0.228313837969817 0.220111264073736 0.22406004895965 0.214873855108925 0.209284662510394 0.21514464976582 0.215095067913134 0.216836410329827 0.212497327582423 0.216968219294281 0.215159129440325 0.216090369630635 1 1 + 24829664 24830120 24829880.455 24828122 24830249 + gene protein_coding_gene FALSE TRUE AT1G66540.1 cytochrome P450, putative similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); similar to Cytochrome P450 81E1 (Isoflavone 2'-hydroxylase) (P450 91A4) (CYP GE-3) (GB:P93147); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.732566515384866 -7.97597853711225 3.38410872840077e-05 0.22883343221446 9.05922320383748 9.38204227127403 -0.732566515384866 0.0900004598690382
AT2G24190_at 3.92861820267012 4.56720654281654 5.62651296514027 5.3149560773324 5.95684584951378 5.39244563261355 5.98381256180499 6.14893113518099 3.14601243063407 5.45360692800512 5.83200207694577 6.24660763885469 6.08243226052506 6.26884873431471 5.5381102953513 6.62900080497332 6.40538209671383 6.18604528511012 4.90926387864122 0.206981566431697 0.199432404488315 0.204919250995722 0.201194059967125 0.199741287906447 0.204643045566336 0.213367642779196 0.211994925909530 0.216648447677307 0.19815075582166 0.211800695090112 0.19815075582166 0.202165986778784 0.206692395666296 0.209797604761373 0.19815075582166 0.201551852644018 0.203918137031793 0.19815075582166 2 2 - 10290839 10291395 10291080 10290714 10292060 - gene protein_coding_gene FALSE TRUE AT2G24190.1|AT2G24190.2 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 1.03057029526849 7.9722275927435 3.39608744970067e-05 0.229609472474262 9.05673085370361 10.6906734849801 1.03057029526849 0.159611808318094
AT3G01650_at 5.56671337699288 5.65474727063781 6.26047675569415 6.38753701659796 7.07924419160137 7.10618017747308 5.78613902269433 5.2065281834316 5.67319099365082 5.22161561722897 5.78364011461464 5.54724243167663 6.15340475958025 6.01772073406973 5.51239450690936 5.70600144515218 6.11401629156647 5.99392353058047 5.42225271335243 0.205760156284363 0.180525390020504 0.185457076940496 0.178771939795029 0.181388983701848 0.215010849005879 0.191658315957836 0.182524815290564 0.184701534575524 0.180942544387673 0.184154429247761 0.180414408068286 0.184929167953341 0.183973280554527 0.196172162241381 0.182586576144126 0.193658775503077 0.184117847850196 0.178771939795029 3 3 + 244068 245015 244592.273 242018 245275 + gene protein_coding_gene FALSE TRUE AT3G01650.1 copine-related similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to RING-finger protein [Capsicum annuum] (GB:AAX20031.1); contains InterPro domain Copine; (InterPro:IPR010734); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.784675386963564 7.95865667303019 3.43981958929363e-05 0.232531804236249 9.0476997466584 11.7772271251468 0.784675386963564 0.103914757603527
AT3G01680_at 6.78678807254647 6.53558973287174 5.31185819163487 4.94956258839232 4.63583502844538 5.36379522535034 7.18637537328931 7.63602129638978 6.95608097170028 6.86427891285405 7.0405458632121 8.00138918618432 7.1778895434375 6.49778136686336 7.47167085541825 7.35678987783794 5.88376806559207 6.30721524762654 7.52781196762066 0.217796114434458 0.218713037836229 0.229025234216303 0.23690920436892 0.218018347396811 0.226278448988675 0.211376696966211 0.211376696966211 0.226351843417729 0.212604719416028 0.220470372116689 0.211376696966211 0.213370092666138 0.220896158365326 0.212260419526737 0.215017150919649 0.225715269453589 0.221841653044997 0.211376696966211 3 3 + 254592 255196 254929.455 251988 255520 + gene protein_coding_gene FALSE TRUE AT3G01680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01670.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32254.1); contains domain NUCLEOREDOXIN (PTHR13871:SF2); contains domain THIOREDOXIN (PTHR13871) -1.05992844680271 -7.94635201127884 3.48000969933847e-05 0.235213855578287 9.03949260090825 13.0923224560299 -1.05992844680271 0.166570504543939
AT3G12740_at 9.97545546921392 10.0795660490859 10.7619796899906 10.7193785334773 10.4572465564472 10.2745001578251 8.88678991333043 8.87527448603823 9.65219591266092 9.53012415048126 9.70071366746497 9.58582859557144 9.53668647463453 9.61943262700886 9.16895792269195 9.95994954161545 9.3604905662805 9.55851810756352 9.34934169752697 0.110638862765860 0.111413335024606 0.113964249339144 0.112163109049965 0.11180655318988 0.118294542364001 0.108684693891066 0.109446642704375 0.110131523695502 0.111549958454577 0.113846377706432 0.107880689642644 0.111646769109611 0.116268561257438 0.111046430050346 0.110254578049319 0.128507122774213 0.110115825800006 0.109198671152911 3 3 + 4050976 4051543 4051257.455 4049522 4051782 + gene protein_coding_gene FALSE TRUE AT3G12740.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT1G54320.1); similar to Os06g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058302.1); similar to Os02g0173800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046043.1); similar to hypothetical protein [Lotus japonicus] (GB:BAD32828.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) 0.574886511324396 7.9440755241103 3.4875020184295e-05 0.235685386405465 9.03797224257189 19.5397119109646 0.574886511324396 0.0371897341942663
AT3G43600_at 5.93095876668771 6.05597290956657 5.04751767393487 5.4210714957061 6.59430738008985 6.71363896715649 5.33751435784542 4.6524385085888 2.76583466281382 5.24608432630993 5.77513229958589 5.92826178892476 6.12400668761361 5.92173384729689 5.28488820940229 4.73115654337854 6.39858859249857 6.37552896085442 5.21756549458104 0.256113161027886 0.250226299596861 0.250226299596861 0.250226299596861 0.250226299596861 0.255189678019119 0.256829499969993 0.257160260889405 0.267396181531658 0.256762083326314 0.254074241460544 0.250226299596861 0.257043361943321 0.25190721954239 0.260078664096525 0.257125637620915 0.267607740258463 0.259386219221917 0.265560229200888 3 3|0 -|/ 15523847 15524544 15524232.6 15523595 15528494 - gene protein_coding_gene FALSE TRUE AT3G43600.1 AAO2 (ALDEHYDE OXIDASE 2) Encodes aldehyde oxidase AAO2. Identical to Aldehyde oxidase 2 (EC 1.2.3.1) (AO-2) (AtAO-2) (AtAO3) (AAO2) [Arabidopsis Thaliana] (GB:Q7G192;GB:O49156;GB:O64418); similar to AAO3 (ABSCISIC ALDEHYDE OXIDASE 3) [Arabidopsis thaliana] (TAIR:AT2G27150.2); similar to AAO4 (ALDEHYDE OXIDASE 4), aldehyde oxidase [Arabidopsis thaliana] (TAIR:AT1G04580.1); similar to AAO1 (ALDEHYDE OXIDASE 1) [Arabidopsis thaliana] (TAIR:AT5G20960.2); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93768.1); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93767.1); similar to aldehyde oxidase [Lycopersicon esculentum] (GB:AAG22607.1); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal; (InterPro:IPR005107); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; (InterPro:IPR000674); contains InterPro domain [2Fe-2S]-binding; (InterPro:IPR002888); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; (InterPro:IPR008274); contains InterPro domain Molybdopterin dehydrogenase, FAD-binding; (InterPro:IPR002346); contains InterPro domain Ferredoxin; (InterPro:IPR001041) 0.928748349254571 7.938281724186 3.50665097973416e-05 0.236944406700637 9.03410008227233 10.8327976461616 0.928748349254571 0.138307376926706
AT1G12860_at 6.2902037491098 6.74692244308344 4.34970648911884 4.53416794298282 6.13956496334195 5.25640201014334 7.18815397808751 7.109769862608 6.8811504372655 6.66527191378913 6.45934026844696 7.03926940108415 6.55560234025576 6.33398113477649 6.70530348066399 6.33632776377126 5.46768438615054 6.31108347680037 6.96870425116559 0.193269205618143 0.192174622013751 0.199994381566397 0.197312301902026 0.203787002487069 0.213663436628869 0.192174622013751 0.194881368011820 0.214001726604051 0.197737389332949 0.200382407310222 0.198954466035498 0.195277873379689 0.194840431852640 0.199036735413131 0.192851957599018 0.213491083841232 0.205885401558318 0.196895827798814 1 1 + 4385605 4386366 4385985.182 4382221 4386390 + gene protein_coding_gene FALSE TRUE AT1G12860.1 basic helix-loop-helix (bHLH) family protein / F-box family protein similar to ICE1 (INDUCER OF CBF EXPRESSION 1), DNA binding [Arabidopsis thaliana] (TAIR:AT3G26744.4); similar to predicted F-box and bHLH containing protein [Overexpression vector pFC12860OE] (GB:ABK41847.1); similar to bHLH protein [Overexpression vector pLE12860OE] (GB:ABK41843.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -1.10055182970258 -7.93215834311052 3.52701562265227e-05 0.238285175466388 9.03000335044959 12.571586212593 -1.10055182970258 0.175523747100632
AT2G34490_at 5.90926619861869 6.40631815364075 4.1076194609482 4.53958685619212 5.16290143850337 5.52336330237094 4.81978047581218 5.6758573443466 1.5759642933893 3.62200531284702 5.59557702315931 5.81764408620336 6.59927753574329 6.64445945352603 4.94751529978887 5.35922527236920 5.84916121073188 7.03914910941542 2.92021227490308 0.228039417840752 0.220232727145301 0.242536551144067 0.215400837646864 0.221014298191781 0.220568656570467 0.221984640398196 0.227127037689330 0.265431233565610 0.223493789324313 0.224300257233421 0.227303551440669 0.22038064869792 0.226409423606852 0.219710343975887 0.215400837646864 0.233105600020626 0.232106004395732 0.230470672960401 2 2 - 14542954 14543493 14543221 14542724 14544511 - gene protein_coding_gene FALSE TRUE AT2G34490.1 CYP710A2 (cytochrome P450, family 710, subfamily A, polypeptide 2); C-22 sterol desaturase/ oxygen binding Encodes a protein with C22-sterol desaturase activity. The enzyme was shown to catalyze the conversion of both 24-epi-campesterol and β-sitosterol to brassicasterol and stigmasterol, respectively, in the presence of NADPH. similar to CYP710A4 (cytochrome P450, family 710, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G28860.1); similar to CYP710A3 (cytochrome P450, family 710, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G28850.1); similar to CYP710A1 (cytochrome P450, family 710, subfamily A, polypeptide 1), C-22 sterol desaturase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G34500.1); similar to cytochrome P450 monooxygenase CYP710A15 [Medicago truncatula] (GB:ABC59097.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 1.20300135910990 7.92055709838416 3.56595745026451e-05 0.240880425765368 9.0222296146715 9.61186752926092 1.20300135910990 0.197043602552969
AT1G51660_at 6.57964839170588 6.4902958931903 7.25174892163089 7.52224997167231 6.7910649059186 6.61717806593 6.00671158957179 5.64173808030391 4.98484277820121 3.18825321602226 4.51466174064916 4.69100725180734 4.4622843325547 4.68694920937793 4.01848845177491 4.67592530295605 4.51743615753771 4.69014988655884 3.75667711209297 0.253116122790956 0.253322374980612 0.259087975713432 0.268293543396962 0.254892509791502 0.263123156415995 0.254323087747088 0.260542818821329 0.266446851425437 0.258198519821594 0.249441565110895 0.250197396715425 0.251393291936895 0.253321393982320 0.259311507390074 0.249823080850081 0.249441565110895 0.25510877559235 0.255402777188126 1 1 + 19158753 19159269 19159033.091 19157991 19159615 + gene protein_coding_gene FALSE TRUE AT1G51660.1 ATMKK4 (MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4); MAP kinase kinase/ kinase encodes a mitogen-activated map kinase kinase (there are nine in Arabidopsis) involved in innate immunity. This protein activate MPK3/MPK6 and early-defense genes redundantly with MKK5. Identical to Mitogen-activated protein kinase kinase 4 (EC 2.7.12.2) (MAP kinase kinase 4) (AtMKK4) (MKK4) [Arabidopsis Thaliana] (GB:O80397); similar to ATMKK5 (MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5), kinase [Arabidopsis thaliana] (TAIR:AT3G21220.1); similar to double MYC-tagged mitogen activated protein kinase kinase 4 [synthetic construct] (GB:ABF55664.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.71074186690412 7.91338605685402 3.59026593676383e-05 0.242486561369029 9.01741649730237 10.8669313910359 0.71074186690412 0.0855872072999859
AT3G57180_at 4.44156654788213 5.02642678411934 4.6334380541712 4.24097269828999 4.67950335368036 4.45392954802825 6.47944094350198 6.97932794667096 5.10723283272061 5.4583734124904 4.2743475749914 4.44902404750236 4.87608121770861 4.26523998797156 5.0344488349509 5.15798014637334 4.86800082850027 4.20127813671298 5.65861359961368 0.230615759193162 0.229525470439699 0.23106551948678 0.227680163512043 0.229138961044864 0.240087076140500 0.240268942440647 0.236116726640514 0.234104911566969 0.231697463856854 0.230157149083283 0.227336686582767 0.231083240474882 0.227474290741363 0.233426566815256 0.231574728259333 0.237362343589255 0.233067133405216 0.231047922997003 3 3|0 -|/ 21174644 21175222 21174889.7 21174524 21177009 - gene protein_coding_gene FALSE TRUE AT3G57180.1 GTP binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10620.1); similar to SDL-1 protein [Medicago truncatula] (GB:ABD33306.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917) -0.99850141338523 -7.90788325911964 3.60904357248754e-05 0.243718712450084 9.01371895402473 10.1412624237666 -0.99850141338523 0.154480840540790
AT1G55810_at 5.73989099027525 5.39419385122327 4.9319096698682 4.88771410161669 5.64433747399543 5.6872574556868 7.11146143533953 6.75810393578024 5.44873108150137 6.36159439939194 6.40064200523009 5.78757100947321 4.92489955903702 5.29351861978969 5.45681618558615 4.9326508600072 5.85352799085612 5.78462068802367 6.23418964937541 0.186897904978136 0.183044695178873 0.193116101842222 0.192425974457233 0.187927326926527 0.187811944828734 0.208528977473735 0.197298036089507 0.192251242950896 0.200938338281655 0.186194770491379 0.187652542593938 0.195234879910613 0.185112672870708 0.196078504983959 0.188529288721714 0.196900311676451 0.186753456774637 0.190094006890029 1 1|0 +|/ 20866551 20867637 20867073.444 20864275 20867932 + gene protein_coding_gene FALSE TRUE AT1G55810.1|AT1G55810.2|AT1G55810.3 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT3G27190.1); similar to uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1) [Arabidopsis thaliana] (TAIR:AT4G26510.2); similar to Phosphoribosyltransferase; AAA ATPase; Phosphoribulokinase/uridine kinase [Medicago truncatula] (GB:ABE83101.1); similar to Os02g0273000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046530.1); similar to Os11g0265000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067657.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836) -0.711832694934318 -7.90066162194115 3.63385141038914e-05 0.245357647229474 9.00886100583633 11.5539182349765 -0.711832694934318 0.0862089151322198
AT2G35860_at 4.62881714049355 5.38990676446742 2.60478181021316 3.08609538352449 2.66151324673084 3.68979217155563 7.92977628311323 8.95220642535 7.84188979703223 8.34369336728309 8.77541521801946 9.34250226573005 8.45430793770417 8.75540718907152 8.73036964734617 8.31866233572465 6.77361206143265 8.31643481239044 8.14723765508073 0.254479305287511 0.245074806449385 0.250075376548129 0.246769297635734 0.239144707490139 0.246063574382551 0.253144770627552 0.239144707490139 0.244161309324561 0.239144707490139 0.239144707490139 0.239165864371249 0.239144707490139 0.241363675963726 0.242877501891302 0.239584082581203 0.269610800522937 0.247465599574321 0.239144707490139 2 2 + 15067770 15068174 15067950.727 15066842 15069201 + gene protein_coding_gene FALSE TRUE AT2G35860.1 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein Identical to Fasciclin-like arabinogalactan protein 16 precursor (FLA16) [Arabidopsis Thaliana] (GB:Q8RWC5;GB:Q9SJ64); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52370.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11700.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06390.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71191.1); similar to Os03g0788600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051504.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -1.69611617002732 -7.89676169940543 3.64732677639534e-05 0.246231030674449 9.0062349783071 13.1400007564607 -1.69611617002732 0.295393773285158
AT4G36900_at 5.04328078834084 4.94435791405797 5.48447341891002 5.32553984772751 5.5031638922236 6.00729042644452 4.73762814422995 4.77008656913726 4.29079873165834 5.06163399624860 5.5381906044768 5.16469830606768 5.43504084478045 5.28700191620971 4.87350754346286 5.42229725388911 5.80347919450558 5.23063379565227 4.37643129690202 0.181431357658553 0.179781575019797 0.190900207054572 0.186087748422451 0.211594231388966 0.197380690105296 0.181317316908718 0.180372487418301 0.193072602401828 0.179355056217936 0.182479823883824 0.184679212050042 0.180729028705392 0.185606968583499 0.181676558001657 0.177741749087151 0.186211944128401 0.181739534863444 0.181702742698479 4 4 + 17389017 17389530 17389286.273 17388811 17389834 + gene protein_coding_gene FALSE TRUE AT4G36900.1 RAP2.10 (related to AP2 10); DNA binding / transcription factor encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G23340.1); similar to Os04g0648900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054079.1); similar to H0721B11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86045.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.737173358247906 7.89527026790848 3.65249469426072e-05 0.246543391862599 9.00523023952642 10.1872997204591 0.737173358247906 0.0932317810623205
AT1G23040_at 7.8743207615953 8.56251292573667 9.69268223670164 9.97751531189446 9.73112471703861 9.48449737282757 8.62528413335129 8.91967997945479 6.51756324489848 6.9899490175252 6.46370909178156 5.73527860335201 7.87642565280725 7.692445938379 6.03228986033229 8.32776236971423 8.93495425228748 7.47615576085292 6.40140038753247 0.281832584686629 0.273796124186937 0.278334032197353 0.279407040659142 0.284900042293870 0.275893462051217 0.277149979765326 0.273796124186937 0.294645113849763 0.285102055175361 0.284131759253453 0.291174786531387 0.280010685327339 0.273796124186937 0.288758862394165 0.286440805062891 0.273796124186937 0.276056092560301 0.285299653694055 1 1 + 8165039 8165424 8165254.364 8164948 8165851 + gene protein_coding_gene FALSE TRUE AT1G23040.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G70990.1); similar to OSJNBa0006B20.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE02748.2); similar to H0315A08.9 [Oryza sativa (indica cultivar-group)] (GB:CAH67579.1); contains InterPro domain Glutelin; (InterPro:IPR000480) 0.95353946705868 7.89326895428841 3.65944210847468e-05 0.246975747900956 9.00388159083985 16.0852931337452 0.95353946705868 0.145018599841424
AT4G23600_at 9.98661660125055 10.0932078920764 9.2759789892134 9.4182629449393 9.8553496984791 9.71435199926087 11.2767011998039 11.1914240945213 6.44200916031107 10.1390149707039 9.72612210676005 8.7714265872066 9.79626327022366 9.74508468742571 9.78545528780967 10.2061533325078 10.2169192391288 10.4498383986881 6.23569028294926 0.108655698329754 0.106134571851925 0.111622881831228 0.115592240497061 0.106785616216305 0.107908804807928 0.109706859299845 0.106134571851925 0.145021253344807 0.107720327345492 0.106734846060027 0.110697287627853 0.108264451133155 0.112236189634353 0.106335926823680 0.106134571851925 0.110940268124387 0.108625009474506 0.131945680445975 4 4|0 +|/ 12311861 12312835 12312212.125 12310629 12313222 + gene protein_coding_gene FALSE TRUE AT4G23600.1|AT4G23600.2|AT4G23600.3 CORI3 (CORONATINE INDUCED 1, JASMONIC ACID RESPONSIVE 2); transaminase Encodes cystine lyase which is expected to be involved in amino acid metabolism, providing the plant with cysteine and the generation of precursors of ethylene biosynthesis. mRNA levels are elevated in response to wounding. similar to aminotransferase class I and II family protein [Arabidopsis thaliana] (TAIR:AT4G23590.1); similar to cystine lyase BOCL-3 [Brassica oleracea] (GB:AAO27362.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.580292426728754 7.88488574638743 3.68870291534908e-05 0.248913672727756 8.99822712138121 18.8228513449632 0.580292426728754 0.041948880003491
AT4G12830_at 7.51190392909022 7.83765351812058 6.95476837326920 7.0608503696481 7.75235828256165 7.0443892862949 9.71857254286736 9.75645527453228 7.98238571772998 8.70547351920935 7.972995167819 8.15128998604123 8.2594006968586 8.2378425087823 7.83112222897873 8.3323213672906 7.73470776968828 7.58189180470136 8.31790359954859 0.198309402271819 0.198712092971592 0.203647302548017 0.194398144999898 0.195962574411485 0.214904705997918 0.210179314746216 0.197936567869236 0.211619573858046 0.194991763036402 0.201990082913023 0.193556603219685 0.201109923521173 0.207741781858704 0.204445930561365 0.201871781772647 0.196680464155602 0.202096415446491 0.194700470439615 4 0|4 /|+ 7532431 7533130 7532770.25 7531138 7533584 + gene protein_coding_gene FALSE TRUE AT4G12830.1 hydrolase, alpha/beta fold family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT1G52510.2); similar to COG0596: Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [Nostoc punctiforme PCC 73102] (GB:ZP_00112083.1); similar to Os01g0919700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045213.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.912806287884218 -7.87923544578426 3.70857058029666e-05 0.250217257052616 8.99441127474523 16.1285943070977 -0.912806287884218 0.136265728603228
AT1G33970_at 10.0574153435789 9.97238212785764 10.3721521776141 10.4386082925575 10.7227151691938 10.4038932928457 9.52243478522415 9.4402598095054 8.82238068612298 9.25959450908628 9.64692606330545 9.20824228408834 9.72264475847762 9.70330645583933 9.16075217136377 9.52094648741178 9.8177592331146 9.41163460518239 8.95226583455043 0.105706050429743 0.103332819571231 0.103833005450684 0.102694602021754 0.105305466881417 0.106337642581500 0.108541481700346 0.109898923059352 0.112331718027871 0.108323952972118 0.103052200915518 0.108983251405772 0.108070295030384 0.106274581942115 0.102694602021754 0.104842683991381 0.103519342947994 0.11760800993935 0.107277394484452 1 1|0 -|/ 12349683 12350402 12350024.5 12349440 12351225 - gene protein_coding_gene FALSE TRUE AT1G33970.1|AT1G33970.2|AT1G33970.3|AT1G33970.4 avirulence-responsive protein, putative / avirulence induced gene protein, putative / AIG protein, putative|GTP binding similar to avirulence-responsive family protein / avirulence induced gene (AIG1) family protein [Arabidopsis thaliana] (TAIR:AT4G09950.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703)|similar to AIG1 (AVRRPT2-INDUCED GENE 1), GTP binding [Arabidopsis thaliana] (TAIR:AT1G33960.1); similar to NTGP4 [Nicotiana tabacum] (GB:AAD09518.1); contains InterPro domain AIG1; (InterPro:IPR006703) 0.624416023636308 7.87289861800874 3.73099300066584e-05 0.251692787824918 8.99012726317165 19.3839527167644 0.624416023636308 0.059959677255978
AT1G53910_at 8.93739042900962 9.1269765751785 8.98006317434323 8.98996363731499 9.23037462802867 8.7879528677825 8.14531386001119 8.06182974776176 6.76152811011385 6.26716805927893 8.06882956202574 7.42566643227375 6.96971156080035 6.9000033014539 7.56724700379097 6.93119992590806 7.23009153198254 8.24762844027212 6.29512863054733 0.262674229523299 0.261127546258979 0.263525291418013 0.263367309470777 0.261766512467463 0.265277680658876 0.258580028453391 0.260701934552713 0.283280937787895 0.258860821819497 0.254582704837743 0.254582704837743 0.261859426593022 0.26489114494371 0.257715064661124 0.256860252818117 0.260332431637396 0.262223383367748 0.263344920824698 1 1 + 20139659 20140185 20139942.818 20138780 20140638 + gene protein_coding_gene FALSE TRUE AT1G53910.1|AT1G53910.2|AT1G53910.3 RAP2.12; DNA binding / transcription factor|RAP2.12 encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.12). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.702741605188572 7.8650870880877 3.75883993876666e-05 0.253533753869811 8.98483968172141 15.7118941914922 0.702741605188572 0.084557621419718
AT2G04795_at 7.23535548380794 7.40460174314714 6.9051089811442 7.08414293286389 7.02590313249462 7.12838066741241 7.68922948423412 7.88919842565265 7.19588435120417 7.60346705098392 6.8236428577352 5.75235646266550 7.0241401760104 7.00510094495073 5.55965648711379 7.2515135146173 7.2702693007672 6.64452099246392 7.34793841299346 0.166688795783093 0.154415982280087 0.150496255806829 0.158232713859257 0.156684704406393 0.155992559720893 0.165621781386296 0.167541371955807 0.161017371051455 0.155582075683661 0.164774033199566 0.181174312170931 0.151245880960675 0.151106476876902 0.183912097916902 0.153645694937704 0.153734852036422 0.163000993059000 0.159001368190342 2 2 + 1683065 1683282 1683168.182 1682950 1683472 + gene protein_coding_gene FALSE TRUE AT2G04795.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35732.1) -0.617371101042513 -7.86345986233373 3.76466961097948e-05 0.253889318564456 8.98373730382007 14.3196551215618 -0.617371101042513 0.0577044995928177
AT1G76180_at 11.4262974660453 11.4595329473057 11.5394571880783 11.5981995140688 12.1440799689569 11.8888055308779 11.5202094613635 11.5352342402964 11.0357180306440 11.2756113481537 12.2261417857707 11.9767403229671 12.0655773902011 12.2693355856834 11.6580463386920 12.1194574150773 11.8706126368481 11.9293745031529 11.1358175759327 0.0750564770758408 0.0730143600350076 0.0780734246281139 0.0758641992092956 0.0745919058633656 0.0777308580384088 0.0732679685602956 0.0752939534714295 0.0783499438166774 0.0755358579087157 0.0729516781734355 0.0729516781734355 0.0763206118204532 0.0753183623276085 0.0748733870638605 0.0729516781734355 0.0779944527740131 0.0729516781734355 0.0739290589303286 1 1|0 -|/ 28591927 28592473 28592188.2 28591667 28592771 - gene protein_coding_gene FALSE TRUE AT1G76180.1 ERD14 (EARLY RESPONSE TO DEHYDRATION 14) Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated. Identical to Dehydrin ERD14 (ERD14) [Arabidopsis Thaliana] (GB:P42763); similar to ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) [Arabidopsis thaliana] (TAIR:AT1G20450.1); similar to pollen coat protein [Brassica oleracea] (GB:CAA64428.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.586339392065855 7.85223538658907 3.80515540014194e-05 0.256581628631571 8.97612455648477 23.2207069057287 0.586339392065855 0.0457683100072384
AT1G76550_at 6.01671137023816 6.12794475251534 6.37703893139799 6.5495202278641 5.75704016400459 6.00534837187296 5.86283427196276 6.03521410974191 5.57233970661574 5.62707345860750 6.91721507664436 7.35788555888119 6.52429199880013 6.64646727835477 7.16208720113372 6.51621107389539 6.29644357021957 7.05023951325088 5.9224836420407 0.196274389221775 0.192695812016478 0.183852871377234 0.183852871377234 0.188334582534324 0.196496232258908 0.184218651251190 0.191511077145764 0.203030637181795 0.201369750656553 0.185051618142787 0.188572016964215 0.188786292839510 0.18743267578875 0.188201598370430 0.186099721858325 0.192485810754416 0.196684439951761 0.193841052476183 1 1|0 -|/ 28727798 28728639 28728164.444 28727596 28731900 - gene protein_coding_gene FALSE TRUE AT1G76550.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related [Arabidopsis thaliana] (TAIR:AT1G20950.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41140); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:P21342); similar to pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus x paradisi] (GB:AAC67587.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.631558510406615 7.84427054457232 3.83417569677372e-05 0.258500125476484 8.9707134256519 12.3495335722758 0.631558510406615 0.0632287932088108
AT2G30860_at 13.5121520614819 13.6034356719036 13.7221032874287 13.7159620148132 13.6471077199812 13.4520660225982 13.2958593920545 13.2006391133227 12.0962528091869 13.0239620227515 13.5600994957693 13.5161397355121 13.5029842704195 13.5477933016882 13.3409603829671 13.2683806569318 13.3869899191502 13.5619955650605 12.5072956866556 0.072108183652837 0.0694059586944383 0.0699735524137686 0.0704652926573184 0.0728516424875772 0.0777534453752194 0.0706698342454724 0.0685198160445912 0.0769129791086131 0.0694905441540137 0.0683097257833486 0.0686134274721004 0.0689668184297393 0.0683097257833486 0.072727462598964 0.0692229025830324 0.0693908027889538 0.0720361749847668 0.0720257493949096 2 2|0 +|/ 13146460 13147107 13146882.1 13146074 13147322 + gene protein_coding_gene FALSE TRUE AT2G30860.1|AT2G30860.2 ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9); glutathione transferase|ATGSTF9 (Arabidopsis thaliana Glutathione S-transferase (class phi) 9) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTF10 (EARLY DEHYDRATION-INDUCED 13), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G30870.1); similar to glutathione S-transferase [Pyrus communis] (GB:ABI79308.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)|similar to ATGSTF10 (EARLY DEHYDRATION-INDUCED 13), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G30870.1); similar to glutathione S-transferase [Pyrus communis] (GB:ABI79308.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.574726305627014 7.84320235796329 3.83808624941910e-05 0.258725394073342 8.96998714540266 26.5202513715157 0.574726305627014 0.0407611068244577
AT4G10140_at 8.04659405700702 8.07953074240656 8.09882842537984 8.41613359021089 8.65502527352824 8.4004984857559 7.59158871394692 7.30471668031546 6.63457400527575 5.84783105586511 6.73843203311044 6.69627122192607 6.67783841224711 6.67099930627937 7.28472694168061 6.48643819967348 7.23902237288094 6.61828654484427 5.59217693178066 0.212994385038638 0.209214781143273 0.209073135900888 0.211127911053071 0.209073135900888 0.209073135900888 0.211933042481244 0.219511426360097 0.209073135900888 0.209384741736870 0.211216179637384 0.209745309183948 0.218465034067747 0.209951687195186 0.212399938698935 0.214376723065909 0.209073135900888 0.21425219638534 0.209073135900888 4 4|0 +|/ 6322574 6324324 6323832.7 6322453 6324660 + gene protein_coding_gene FALSE TRUE AT4G10140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33490.1); similar to hypothetical protein LB305 [Leptospira interrogans serovar Lai str. 56601] (GB:NP_714849.1); similar to Os05g0105500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054411.1) 0.70682755503642 7.84040357344321 3.84835330843323e-05 0.259379012988400 8.9680835492727 14.4872957677626 0.70682755503642 0.0863275419224943
AT1G09830_at 7.38557315429655 7.56484810085764 7.23319769680767 7.23829938611672 6.46095315081562 6.36722060746294 7.34150609066457 7.81394533442728 7.31227956160322 7.27926033398899 5.87616472731031 6.6041093534994 6.1370660068466 6.60515781294416 6.56132228599133 6.75716327751864 6.25235077952844 6.19950296199707 6.72340256431619 0.189122623671809 0.181433547863273 0.183503717537906 0.183077984017972 0.187045996321043 0.176413935522384 0.175705465517555 0.206209326169889 0.202307314335812 0.175705465517555 0.181362590642664 0.185263180798402 0.183479281569029 0.187802295040158 0.183496252417616 0.179264743294538 0.182380198810255 0.183666471184543 0.185984943112774 1 1 - 3192811 3193416 3193092.636 3192683 3195027 - gene protein_coding_gene FALSE TRUE AT1G09830.1 phosphoribosylamine--glycine ligase (PUR2) glycinamide ribonucleotide synthetase (GAR synthetase) that catalyzes the conversion of phosphoribosyl amine to phosphoribosyl glycineamide Identical to Phosphoribosylamine--glycine ligase, chloroplast precursor (EC 6.3.4.13) (GARS) (Glycinamide ribonucleotide synthetase) (Phosphoribosylglycinamide synthetase) (PUR2) [Arabidopsis Thaliana] (GB:P52420;GB:O04505); similar to glycinamide ribonucleotide synthetase [Nicotiana tabacum] (GB:AAR06584.1); similar to Os08g0191200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061170.1); similar to Phosphoribosylglycinamide synthetase [Medicago truncatula] (GB:ABE92069.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Phosphoribosylglycinamide synthetase; (InterPro:IPR000115) -0.716213314512872 -7.83994151663183 3.85005123375475e-05 0.259454952642733 8.96776919039506 13.9152356755181 -0.716213314512872 0.0889423805162769
AT2G28890_at 9.13206425743294 9.15320409504719 9.32286889468536 9.56717426569286 9.45106415840745 9.22757557406514 8.251129910938 8.04183289283517 8.36671951933654 7.96109680304965 8.66149752208982 8.80630577375402 8.28475933676737 9.17300996413581 8.04674000968318 8.75164868584354 8.64219706752202 8.98478665432913 8.05160150846582 0.128409719326159 0.126382728331393 0.129101739826912 0.126118464442541 0.131426969095396 0.128391679384386 0.142200123914334 0.132639401814796 0.135374415866004 0.135999571380476 0.130282312800316 0.126417452302615 0.126111536654716 0.131501263661375 0.134776196714357 0.125669877870421 0.140507344812291 0.131335836773611 0.132388873480936 2 2 - 12412907 12413717 12413318.364 12412673 12415312 - gene protein_coding_gene FALSE TRUE AT2G28890.1 PLL4 (POLTERGEIST LIKE 4); protein phosphatase type 2C Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves. similar to PLL5 (POL-like 5), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G07630.1); similar to Protein phosphatase 2C, putative [Medicago truncatula] (GB:ABE91024.1); similar to Os03g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049705.1); similar to Os03g0821300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051726.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.645004225315494 7.83740030488375 3.85940425879659e-05 0.260046658957714 8.96603982666742 17.4160346246628 0.645004225315494 0.0678860594847457
AT1G73530_at 7.15919791716303 7.438721472528 5.04806548621349 5.68721625253796 6.4702717872137 5.78879560972603 7.53171167496515 7.47010390801953 7.42581804590238 6.97795920384149 6.54331948415103 7.27056383344469 6.1187033375927 6.79203506230166 7.07619776557448 7.06013347960086 6.38626691130067 6.54331570774539 7.15455435580447 0.243015450536316 0.229712286314825 0.229795189579846 0.240562354664975 0.237679318603245 0.241356850911267 0.232762656564704 0.231097913858613 0.235709842069919 0.233275856649590 0.249815220420406 0.229712286314825 0.233005548094768 0.245133848300509 0.232436171058967 0.240362826386087 0.241141929508009 0.235907074916861 0.230342939425706 1 1|0 -|/ 27647503 27649013 27648590.8 27647294 27649055 - gene protein_coding_gene FALSE TRUE AT1G73530.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G54580.1); similar to RNA-binding re (GB:ABE80433.1); similar to Os08g0139000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060964.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -1.05682002335749 -7.83441352057213 3.8704293351211e-05 0.260750824307109 8.96400624657227 13.5292242549942 -1.05682002335749 0.169103047367875
AT3G07080_at 5.64117200881147 6.0402519907842 5.46477449159187 5.27319013764076 6.60610392642052 6.22184214664612 4.50317648762513 4.7205807953638 4.44222342803175 3.68379971994799 4.51954336968686 5.0310998562196 4.80967689475357 5.40814356854494 5.04484691082087 5.32963471864273 4.95558614058287 4.7651923366327 4.08349507318861 0.268812332635959 0.268010394699053 0.268272525044293 0.262139601165929 0.263853345556885 0.283390678710929 0.262838715909441 0.260573250477165 0.269727536022303 0.263903757236829 0.263429650771349 0.261858106112026 0.268386937701429 0.270370557380449 0.269368110144369 0.26226038664842 0.283509723961212 0.279890402148668 0.267894755041261 3 3 + 2242216 2242885 2242522.636 2241042 2243130 + gene protein_coding_gene FALSE TRUE AT3G07080.1 membrane protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32140.1); similar to Os06g0681700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058380.1); similar to hypothetical protein Tb927.8.1460 [Trypanosoma brucei TREU927] (GB:XP_825884.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.789154211179033 7.83176595186656 3.88023136679829e-05 0.261372384867533 8.96220272778824 10.0852889388813 0.789154211179033 0.108196004729658
AT3G52720_at 6.42917605235141 6.48680858292627 8.14999753867809 8.3605410540282 7.02951207438058 7.02085814356822 10.8058307918981 10.7312485843357 9.0184980888225 9.83057463224838 9.38468338145686 9.67508076641797 9.47952668925276 9.0276189322876 8.48474026402875 9.6688845821116 9.60376641631346 9.78839851354546 9.83219567096043 0.236683452995593 0.221951694673721 0.220114176239251 0.211848629211617 0.222960275355490 0.226072823640763 0.212939702659971 0.209604689672037 0.213580225162076 0.208436434570586 0.204407158056631 0.204407158056631 0.212825808899227 0.204407158056631 0.20846988003314 0.204626955032022 0.207948275358350 0.210033622483420 0.210390312068721 3 3|0 -|/ 19549833 19551432 19550643.6 19549668 19552262 - gene protein_coding_gene FALSE TRUE AT3G52720.1|AT3G52720.2 carbonic anhydrase family protein similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT1G08080.1); similar to Os02g0533300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047030.1); similar to OJ000126_13.1 [Oryza sativa (japonica cultivar-group)] (GB:CAD40596.2); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148)|similar to carbonic anhydrase family protein [Arabidopsis thaliana] (TAIR:AT2G28210.1); similar to Os02g0533300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047030.1); similar to OJ000126_13.1 [Oryza sativa (japonica cultivar-group)] (GB:CAD40596.2); contains InterPro domain Carbonic anhydrase, eukaryotic; (InterPro:IPR001148) -0.572187077190527 -7.83137192238636 3.88169251605993e-05 0.261431990956637 8.961934243575 17.6015017230311 -0.572187077190527 0.0399480776732341
AT1G02205_at 9.82436464818732 9.81912725580667 10.7224033442142 10.6813170842275 11.2918902822814 10.8153811393694 12.0411067276387 11.9168646416072 10.5229484881338 10.6688931462113 12.1864778497357 12.0030662472808 12.1619890234135 12.0099894450163 12.1571327230388 11.5991092521087 11.4097283629942 12.1820683049481 10.4163788454099 0.0965221744694273 0.09727481916577 0.097063559451557 0.0984903365327029 0.099920246854207 0.105638296870252 0.0974599281279073 0.098369271688809 0.119283826118254 0.106476513964973 0.0980132854719924 0.0969246766490719 0.0984159099942632 0.0981957304757481 0.0965221744694273 0.096810671454549 0.101221473694160 0.0985810911374901 0.108284181557777 1 1|0 +|/ 419126 422222 420696.45 418767 422438 + gene protein_coding_gene FALSE TRUE AT1G02205.1|AT1G02205.2 CER1 (ECERIFERUM 1) Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase. similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT1G02190.1); similar to CER1 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66132.1); similar to Os10g0471100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064826.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088)|similar to CER1 protein, putative [Arabidopsis thaliana] (TAIR:AT1G02190.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABD28316.1); similar to CER1 [Oryza sativa] (GB:AAD29719.1); similar to CER1 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66132.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.70250190101426 7.82430177642339 3.90801377280345e-05 0.263165647460584 8.95711360441602 22.1389412125759 0.70250190101426 0.0855199257662476
AT4G17510_at 6.88808906508327 6.91308877289647 7.11410287773993 6.93756232215703 7.18844139498529 7.01550903264565 6.45289069618532 6.05157686440391 5.07091370953342 5.36477057615619 6.34505162369866 6.54669942410371 6.02895899636833 5.39656737815863 6.1049295861169 5.98204569894894 6.54525973693546 5.54182431348997 5.0789601395836 0.264103939383798 0.265870251515334 0.268647812331921 0.262335977491194 0.259505044753869 0.282508115486092 0.262927618934505 0.268042577765721 0.275080519157300 0.26645003962863 0.266978665666206 0.261974580752415 0.259655977590450 0.270920475929297 0.274575599402160 0.261164364554386 0.268188174319442 0.272079925489687 0.259505044753869 4 4|0 -|/ 9767146 9768355 9767640.143 9766984 9768783 - gene protein_coding_gene FALSE TRUE AT4G17510.1 ubiquitin carboxyl-terminal hydrolase, putative / ubiquitin thiolesterase, putative similar to ubiquitin carboxyl-terminal hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G16310.1); similar to ubiquitin carboxyl-terminal hydrolase, putative [Brassica oleracea] (GB:ABD65144.1); contains InterPro domain Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; (InterPro:IPR001578) 0.688680755104784 7.82027830072883 3.92308065547130e-05 0.264141020532883 8.95436758910996 12.4366402465048 0.688680755104784 0.0816755584043871
AT2G26230_at 8.56467592961507 8.65422537100706 9.14923663453767 9.14293015423267 8.99654244237769 8.81472645190737 8.27748231498176 8.19279395032184 7.72805335835866 7.55728633884911 8.05007181877591 8.03522456286047 8.33383018740435 8.0266276025168 7.9071111188496 8.16883348063115 8.34435782388462 8.02467643708743 7.45521501634669 0.141174623495766 0.142762236347316 0.145695134979591 0.143486207444247 0.147456834649815 0.144061780635190 0.142400994445612 0.142853764873137 0.155151246915609 0.140098530701840 0.139598300755356 0.140508252225931 0.140252737897139 0.141971369259340 0.141920323179384 0.148524205192765 0.142795598869417 0.143376726964426 0.151186473234890 2 2|0 +|/ 11172594 11174014 11173286.778 11171653 11174273 + gene protein_coding_gene FALSE TRUE AT2G26230.1 uricase / urate oxidase / nodulin 35, putative Identical to Uricase (EC 1.7.3.3) (Urate oxidase) (Nodulin 35 homolog) [Arabidopsis Thaliana] (GB:O04420;GB:O64848); similar to uricase [Lotus japonicus] (GB:BAB18538.1); contains InterPro domain Uricase; (InterPro:IPR002042) 0.56736062688278 7.8176992501061 3.93277228359913e-05 0.264754230131894 8.95260636511265 16.5698399228824 0.56736062688278 0.0380279690086951
AT1G79160_at 6.87489705990631 7.39996839082472 7.3256367274651 7.54863146421458 8.02049715973233 8.196874733977 7.21060719915569 7.32782002655042 6.21999703247326 6.64664557602971 7.71542122078388 7.57514468048789 7.92297815194705 7.5297786237578 6.80001801532144 7.86125233314603 7.34134664448492 7.2121123180306 6.67323302094023 0.220247796514068 0.21505049582091 0.214413604500184 0.220381345541622 0.213893555203115 0.234835613858286 0.211903296056482 0.214282861976806 0.215828709444187 0.224318619210539 0.213465631610188 0.211903296056482 0.221246493926872 0.218657832530979 0.218122849672226 0.216458900699618 0.249798115549092 0.226386834531432 0.226163531282465 1 1 - 29784799 29785388 29785077.909 29784614 29785666 - gene protein_coding_gene FALSE TRUE AT1G79160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16500.1); similar to H0313F03.6 [Oryza sativa (indica cultivar-group)] (GB:CAH68335.1) 0.775525737125925 7.81044013731838 3.96019306769823e-05 0.266560595386768 8.9476448360523 14.4921407827163 0.775525737125925 0.105304075873334
AT2G42690_at 10.7313658612118 10.7432804003325 10.4426768718175 10.4728561183624 10.5101864888986 10.3163639573941 11.1224057313966 11.3233583356714 11.1509382022343 11.4100525641627 10.7429015037922 10.6931518895561 10.5299115031112 10.6210990292015 10.4381329794723 10.7144582658810 10.4946674719474 10.8678180173405 11.2463583038244 0.101407151185804 0.0962191324665873 0.103171929235144 0.099300244028469 0.0954148296231276 0.099281840076438 0.0993596820292022 0.100085651218841 0.107591935847796 0.097525601499271 0.102712403023901 0.0956467335700295 0.0966061521902133 0.099085107845739 0.101261490951215 0.0991585454903258 0.102080033244355 0.102020759884203 0.0977510983150308 2 2|0 -|/ 17783461 17784052 17783862.4 17783318 17784794 - gene protein_coding_gene FALSE TRUE AT2G42690.1 lipase, putative similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G18550.1); similar to lipase [Dianthus caryophyllus] (GB:AAD01804.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.587965248618814 -7.78436866115239 4.06043171089781e-05 0.273267054143423 8.9297727124008 21.6612536902748 -0.587965248618814 0.0486409426401204
AT1G55450_at 10.378450759379 10.2397943330028 10.4686758453187 10.4537534073668 10.7469533881295 10.3930565990219 9.0605192428871 8.6785481640882 10.4084122469191 9.61490938745329 10.3614190154903 10.8048310385515 9.88315098021198 10.5285937681359 10.3467150589008 10.1519993708405 10.0557774996796 10.6774490016244 9.45280309404972 0.106046123027061 0.098591198669588 0.098591198669588 0.0990907228228555 0.101816451048660 0.105850669694832 0.103547454099018 0.109747921271103 0.108855323494995 0.105520061169582 0.103505400084404 0.100266354709716 0.101028748681153 0.102672453479329 0.103210078373799 0.098591198669588 0.102159773921589 0.0995401895772415 0.102632740168508 1 1|0 -|/ 20708951 20709685 20709375.8 20708593 20710556 - gene protein_coding_gene FALSE TRUE AT1G55450.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT3G54150.1); similar to embryo-abundant protein EMB-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89030.1); similar to Os01g0716500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044071.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.726074371162636 7.77417000352293 4.10040305540269e-05 0.275916121598047 8.92275905863009 20.1407774054760 0.726074371162636 0.0932880417021744
AT1G76800_at 6.07407991287633 6.59178791531029 7.25200631798565 7.2246959423245 5.89277585312128 5.46607202634528 8.95548527889842 8.7643701701895 6.7939550424525 6.40646200616467 6.78490051221234 6.12579770642341 5.82787889389205 5.93507746806238 5.0822532967076 5.44407182661813 5.50136281698588 7.3777612827718 6.42397487754711 0.247940772283799 0.247940772283799 0.247940772283799 0.247940772283799 0.250291218066639 0.259706875204294 0.26699131903784 0.264489855403823 0.261825329020603 0.247940772283799 0.248753918578449 0.251888026813711 0.252376316320428 0.251924119653638 0.254217759055288 0.247940772283799 0.258116240560059 0.255039412799997 0.249130307568097 1 1 + 28834299 28834778 28834544 28834202 28835171 + gene protein_coding_gene FALSE TRUE AT1G76800.1 nodulin, putative similar to nodulin, putative [Arabidopsis thaliana] (TAIR:AT3G43660.1); similar to H0701F11.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86136.1); contains InterPro domain Protein of unknown function DUF125, transmembrane; (InterPro:IPR008217) -0.83455964215168 -7.77244347787981 4.10721270517435e-05 0.27633327080413 8.92157046961406 13.3033351525550 -0.83455964215168 0.120812554848859
AT3G60420_at 9.24320349479847 9.48863682732006 11.0167990546578 10.9852795770633 8.30604092269813 8.1467343812504 6.8772260054868 6.66853430263184 7.26173090147541 6.66894721181122 6.35856813176861 6.23647791103273 5.19338911864784 6.51288867117737 5.60613543776314 6.32371952599787 6.51794255582682 6.42646649410845 5.40651315890802 0.260323535165486 0.257238056093267 0.270611636520387 0.269354230731494 0.251416879045250 0.256638745442701 0.276399400415395 0.251563989915196 0.273595787793673 0.254349970981882 0.253080555149608 0.250409061322944 0.253067263937903 0.25234334870347 0.252483133654402 0.257633461039958 0.252307471363892 0.2628115436095 0.259763753704076 3 3|0 +|/ 22345691 22346654 22346170 22345406 22346760 + gene protein_coding_gene FALSE TRUE AT3G60420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60450.1); similar to pRIB5 protein [Ribes nigrum] (GB:CAA07566.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain PRIB5; (InterPro:IPR012398) 0.6227656915418 7.76357494198132 4.14238886325348e-05 0.278658498831062 8.9154594021263 15.1378962731660 0.6227656915418 0.0624345634620553
AT3G15010_at 7.20286099192594 7.30327696647609 7.61710055819816 7.58307372676574 7.63850282079302 7.65699563178288 7.52016498596552 7.46094792233528 6.88956262057729 5.84793704426724 6.68850608142431 7.0462132017757 7.17830257947566 6.98392512589159 7.30121361561539 7.11263880704434 7.32312484045367 7.32911229941508 6.15763912051534 0.164000559373032 0.159062348240409 0.167083875667352 0.163396338056553 0.165285149338776 0.179917176868317 0.166941459739501 0.167009637392259 0.177455114453229 0.185801876797471 0.160832283515591 0.166374316689930 0.170965648912623 0.164492000704719 0.165280516528909 0.162950836626853 0.167272205012708 0.172336054571948 0.182336516140091 3 3 + 5053519 5054023 5053818 5052738 5054949 + gene protein_coding_gene FALSE TRUE AT3G15010.1|AT3G15010.2 RNA recognition motif (RRM)-containing protein similar to UBA2A, AU-specific RNA binding / RNA binding [Arabidopsis thaliana] (TAIR:AT3G56860.2); similar to Os01g0614500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043567.1); similar to RNA-binding protein AKIP1-like [Solanum tuberosum] (GB:ABB86250.1); similar to Os01g0265800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042672.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.537052720738126 7.75695307858006 4.16887081665109e-05 0.280398251127952 8.91089020816439 14.2072450325338 0.537052720738126 0.0212581562584312
AT3G45160_at 7.509879600842 7.58429173567667 6.87909780845023 6.88806510752715 6.34770203231972 6.11112837806575 7.88774373719215 8.17673036888594 8.7055327855827 9.58155987621807 9.39192786585162 9.83117821730153 9.26016300737223 10.0398471790840 9.04376505950048 9.02876812570605 8.70372061066866 9.37359869505281 9.81031386778706 0.194361872603480 0.180438160572725 0.194632453402028 0.213382483588626 0.207691553434051 0.209079386605408 0.190885879382809 0.183655226519078 0.192121543466258 0.18751726678031 0.185734795328144 0.187176462417623 0.180438160572725 0.182766780594425 0.187514819110422 0.183058654213181 0.191147392743769 0.180438160572725 0.186285918714159 3 3 - 16544688 16544887 16544786.455 16544436 16545067 - gene protein_coding_gene FALSE TRUE AT3G45160.1 unknown protein -0.632422055260291 -7.75660658852448 4.17026162818556e-05 0.280450094495479 8.91065097716245 16.5230414819182 -0.632422055260291 0.0659195052984081
AT2G43020_at 9.25327121919494 9.5990910386313 9.47277475695556 9.33103425261007 10.1604595837578 9.87979945735582 8.71726165061317 8.66342682599734 8.99271597402751 8.80124518847493 9.74991852676304 9.27345009496987 9.18534364063606 9.613601217275 9.28817131345293 9.1928659923402 9.17987008242551 9.7256025698534 8.27470087315302 0.091330492416566 0.0869808911764906 0.0915280776668612 0.0875068697808183 0.0881675635538857 0.0900266530783852 0.0925073238331646 0.0920274312484229 0.0986985579435911 0.0903414174157714 0.086804495278936 0.0883241231829465 0.0904665476340514 0.0906566248931031 0.0955828910558638 0.0887062200809993 0.107906986385004 0.0967042952092927 0.0936119433484915 2 2 + 17901026 17901450 17901222.091 17898580 17901712 + gene protein_coding_gene FALSE TRUE AT2G43020.1 ATPAO2 (POLYAMINE OXIDASE 2); amine oxidase similar to ATPAO3 (POLYAMINE OXIDASE 3), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G59050.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); similar to Os04g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053923.1); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) 0.682151623444991 7.75612780596494 4.17218430544128e-05 0.280537672697872 8.91032038186784 18.4299683189393 0.682151623444991 0.0814184975475872
AT3G19640_at 8.43433420712686 8.24732182555649 8.65632800617125 8.74537251912958 8.69740594673632 8.69903914232707 7.8119481836018 7.95473779803836 6.55379380354692 7.06218678843784 7.51480575880385 7.42173178382799 7.17771967409244 7.51263649483688 7.16803599203016 7.50839027699785 7.56025139276767 7.55122066313049 6.98245704450333 0.209707612479376 0.208299735147989 0.213255384870631 0.206697717287393 0.207274170211953 0.210306176337683 0.211159745626530 0.216058022989776 0.239226647041652 0.206697717287393 0.206697717287393 0.208122499380405 0.212245241852252 0.211565919037971 0.213598825971281 0.206697717287393 0.219520849621051 0.215256204985776 0.212380414670568 3 3 + 6822376 6823082 6822824.909 6820932 6823312 + gene protein_coding_gene FALSE TRUE AT3G19640.1 magnesium transporter CorA-like family protein (MRS2-3) similar to magnesium transporter CorA-like family protein (MRS2-1) [Arabidopsis thaliana] (TAIR:AT1G16010.1); similar to Os01g0908500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045144.1); similar to Mg2+ transporter protein, CorA-like [Medicago truncatula] (GB:ABE86185.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) 0.574077012870867 7.75426916012766 4.17965746982368e-05 0.280998371696246 8.90903673765783 15.5523083952811 0.574077012870867 0.0435376429821967
AT3G48560_at 10.4601638019270 10.4664203146460 9.86310505770903 10.1694986110691 10.2798379803251 10.1078714184991 11.0818306804948 11.1458789480409 11.3277335234769 11.3262205044307 10.6415851149006 10.7736714928940 10.8291490107545 10.8172792831747 10.6502209094926 10.9710419959018 10.723587478544 10.7917858922633 11.3373622345732 0.0676723252478237 0.0698830056274146 0.076295881838966 0.0714405289979638 0.0745031909249923 0.0704613108938794 0.0688789135120389 0.0673560270948033 0.0714646062237393 0.0670863913624244 0.0673719417578218 0.0676336715245659 0.0670019403058155 0.0673226696866149 0.0677793228671656 0.0670942929980331 0.0694351311124579 0.0688594101487496 0.0692911117524745 3 3 - 18012544 18013036 18012757.727 18012297 18014566 - gene protein_coding_gene FALSE TRUE AT3G48560.1 CSR1 (CHLORSULFURON/IMIDAZOLINONE RESISTANT 1) Catalyzes the formation of acetolactate from pyruvate, the first step in valine and isoleucine biosynthesis. Requires FAD, thiamine pyrophosphate and Mg. Inhibited by the sulphonylurea herbicide, chlorsulphuron, and the imidazolinone herbicide, imazapyr. The obtained crystal structure of acetohydroxyacid synthase AHAS, EC 2.2.1.6)in complex with herbicides of the sulphonylurea and imidazolinone family reveals the molecular basis for substrate/inhibitor binding. Identical to Acetolactate synthase, chloroplast precursor (EC 2.2.1.6) (Acetohydroxy-acid synthase) (ALS) (CSR 1.2) [Arabidopsis Thaliana] (GB:P17597;GB:Q5FV34); similar to pyruvate decarboxylase family protein [Arabidopsis thaliana] (TAIR:AT5G17380.1); similar to acetolactate synthase 2 [Camelina microcarpa] (GB:AAR06607.1); similar to acetolactate synthase 1 [Camelina microcarpa] (GB:AAR07633.1); similar to acetolactate synthase 1 [Camelina microcarpa] (GB:AAR07632.1); contains InterPro domain Thiamine pyrophosphate enzyme, N-terminal TPP binding region; (InterPro:IPR012001); contains InterPro domain Thiamine pyrophosphate enzyme, central region; (InterPro:IPR012000); contains InterPro domain TPP-binding enzymes; (InterPro:IPR000399); contains InterPro domain Thiamine pyrophosphate enzyme, C-terminal TPP-binding; (InterPro:IPR011766); contains InterPro domain Acetolactate synthase, large subunit, biosynthetic; (InterPro:IPR012846) -0.619571888148055 -7.74586129996877 4.21364865585481e-05 0.283241462646560 8.90322471329924 21.4994403022893 -0.619571888148055 0.0618148818470117
AT4G33040_at 5.68351103506348 5.9680635646267 7.99525204778658 8.60537255941877 7.6610509935828 6.90029162224443 5.75860340323255 6.19982913241516 3.25525505767242 4.57780243028251 3.38480013170097 3.38886355826264 5.30049116412547 4.55062031242768 3.43626710714590 5.24907031430378 5.46352555441806 4.13400037738183 4.01848851032876 0.287227937860433 0.284314852615037 0.285746102967954 0.298324502820287 0.292941391496496 0.299696302233271 0.280402851290626 0.28180226540221 0.289604259320955 0.280402851290626 0.284165504638459 0.289022317018116 0.286099119386255 0.284446517201338 0.301550109374549 0.280402851290626 0.295367883639731 0.294008334553883 0.280402851290626 4 4 - 15940805 15941161 15940963.182 15940564 15941333 - gene protein_coding_gene FALSE TRUE AT4G33040.1 glutaredoxin family protein Identical to Glutaredoxin-C6 (AtGrxC6) (GRXC6) [Arabidopsis Thaliana] (GB:Q8L9S3;GB:O82644); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G11930.1); similar to Glutaredoxin [Medicago truncatula] (GB:ABE86256.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 1.15046475206662 7.74359362494225 4.22286858050354e-05 0.283818997295643 8.90165567943043 11.0034818686623 1.15046475206662 0.191665532233651
AT1G50640_at 5.34170023824528 6.04224978880978 5.70694904896589 5.86624041167124 6.42207737923723 6.22073733039133 5.13994195184648 5.52996771485206 4.93601918711956 4.62833702498078 6.00893747280281 5.77720551509968 6.81378816075165 6.45143414505491 5.72693937126629 6.62028842434019 5.70843367604411 5.29471605389331 4.57931723266984 0.235743203105579 0.243694973099048 0.247571254739864 0.242471298913255 0.239272620418090 0.263694005038082 0.236151136933272 0.236680713193569 0.243088173972509 0.235743203105579 0.237755459767305 0.241089808123632 0.241993791976353 0.2476497216053 0.243976128113620 0.244523920743545 0.249864718552296 0.242585661097842 0.244254462701799 1 1 - 18761328 18761754 18761512.273 18760816 18762101 - gene protein_coding_gene FALSE TRUE AT1G50640.1 ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-3). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3) (EREBP-3) (AtERF3) (ERF3) [Arabidopsis Thaliana] (GB:O80339); similar to ERF7 (ETHYLINE RESPONSE FACTOR7), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G20310.1); similar to Ethylene-responsive transcription factor 3 (Ethylene-responsive element-binding factor 3 homolog) (EREBP-5) (NtERF5) (GB:Q9SXS8); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.938098078305626 7.74064021814597 4.23490998084575e-05 0.284585950712835 8.8996112359939 11.1661208166674 0.938098078305626 0.145695308530006
ATCG00350_at 11.4816932546659 11.8382817813432 12.6244042062177 11.9720678707663 12.5270609455942 11.7327154025669 11.9039454568989 11.5075993615037 12.0046710662560 11.2524524176459 13.4347233660028 13.5308831319843 13.7986193628791 13.3299951424915 13.0787455954749 13.3310480635309 13.0901140318334 12.8005004026396 11.0854939251068 0.0982067511644562 0.0906440935732214 0.0959133245365722 0.0936440647615724 0.0921333063513237 0.0997128943413797 0.0931678974122802 0.0980596874948262 0.104008821680373 0.0940060770421073 0.0925410336054746 0.092555086673805 0.0906440935732214 0.0927705938011873 0.0909740479179598 0.0906440935732214 0.099653484732806 0.0964507281728986 0.0940221108746025 C C - 39661 40172 39886.3 39605 41857 - gene protein_coding_gene FALSE TRUE ATCG00350.1 Encodes psaA protein comprising the reaction center for photosystem I along with psaB protein; hydrophobic protein encoded by the chloroplast genome. Identical to Photosystem I P700 chlorophyll a apoprotein A1 (PsaA) (PSI-A) (psaA) [Arabidopsis Thaliana] (GB:P56766;GB:Q31852); similar to PSI P700 apoprotein A1 [Nicotiana sylvestris] (GB:YP_358674.1); similar to photosystem I P700 apoprotein A1 [Coffea arabica] (GB:YP_817482.1); similar to photosystem I P700 apoprotein A1 [Eucalyptus globulus subsp. globulus] (GB:YP_636299.1); contains InterPro domain Photosystem I psaA and psaB; (InterPro:IPR001280); contains InterPro domain Photosystem I psaA; (InterPro:IPR006243) 1.19148582172583 7.7394304242436 4.23985340286919e-05 0.284875750138781 8.898773469559 24.321904921665 1.19148582172583 0.200383038939631
AT1G01725_at 6.35305810585401 6.16456007932608 6.6941084016789 6.61026831079433 8.07669954895142 7.55845410549501 5.80659699824147 5.93008203737573 5.35153657568298 5.4538496666038 6.06954431166301 6.05533226193816 5.87370123978852 5.78471389055355 5.52662660491491 6.32759957947848 6.28158094911934 5.28619606845444 5.96074029367657 0.219262158140015 0.219802026220483 0.213157862536024 0.224083889535206 0.223461397713408 0.225838801702543 0.211467297497061 0.213191451096896 0.235288040675105 0.215272198678970 0.214103077166467 0.212767641222606 0.218068739048566 0.214913366473228 0.22081323762765 0.215139895059512 0.219172787867463 0.222013910030372 0.213857491864606 1 1|0 -|/ 270019 270709 270415 269792 270775 - gene protein_coding_gene FALSE TRUE AT1G01725.1 unknown protein 0.741630652224139 7.718090633179 4.32810744430609e-05 0.290762258108483 8.88396646334242 12.3939138027446 0.741630652224139 0.0988667157833079
AT1G26665_at 6.41825535990116 6.94977058269155 5.67469282053863 6.0868877197237 7.16952939123197 7.2482831020767 3.07771718767583 3.73413718236038 3.56303871239992 3.33868908880289 4.51389557945723 3.72639378588844 3.82619628269876 4.5367135346859 3.64415492609891 3.58974425783805 4.05163111685037 3.80958363100518 3.40076686325098 0.267609045681303 0.267088109286678 0.262883908792532 0.263654621351544 0.273983880466511 0.266161581212767 0.266144711075809 0.262281407739934 0.268160701443092 0.266223788994213 0.262281407739934 0.262281407739934 0.266281559621195 0.263855071056606 0.262281407739934 0.262281407739934 0.262281407739934 0.26519289456701 0.262281407739934 1 1|0 +|/ 9214530 9215347 9214856 9214161 9215539 + gene protein_coding_gene FALSE TRUE AT1G26665.1|AT1G26665.2 similar to RNA polymerase II mediator complex protein-related [Arabidopsis thaliana] (TAIR:AT5G41910.1); similar to At1g26660/T24P13_4 [Medicago truncatula] (GB:ABE78676.1); similar to Os09g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063737.1) 1.01400121569981 7.71722655501155 4.33172346430031e-05 0.290961865097052 8.88336572973073 9.4931361820083 1.01400121569981 0.163213799814082
AT3G48110_at 8.13163753821826 8.05773133187 7.29597337442668 7.15511827409417 7.44441075302962 6.98977201054543 8.34402650576058 8.23701186329194 7.91550396017592 8.35776455229741 7.60688067422727 8.06298623759904 7.48245385195526 7.84776025276128 8.35871585599827 7.94847133009347 7.6402818863749 7.54841023681629 8.40269826539943 0.167848784338378 0.166229090053424 0.168597409283446 0.165386685030496 0.163596036407148 0.178895973081094 0.161412827560461 0.165168875971256 0.183425678075642 0.166816155516376 0.17306969063767 0.165652314281829 0.161412827560461 0.166338049598061 0.175847539422533 0.16303090534771 0.170907096439576 0.164057700636856 0.161412827560461 3 3 + 17780834 17781915 17781478.091 17773986 17782131 + gene protein_coding_gene FALSE TRUE AT3G48110.1 EDD1 (EMBRYO-DEFECTIVE-DEVELOPMENT 1) glycine-tRNA ligase Identical to Glycyl-tRNA synthetase 2, chloroplast/mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase 2) (GlyRS 2) (GLYRS-2) [Arabidopsis Thaliana] (GB:Q8L785;GB:O23150;GB:Q9SU73); similar to Glycyl-tRNA synthetase (GlyRS) [Includes: Glycyl-tRNA synthetase alpha chain (Glycine--tRNA ligase alpha chain); Glycyl-tRNA synthetase beta chain (Glycine--tRNA ligase beta chain)] [Frankia alni ACN14a] (GB:YP_712250.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52576.1); similar to Glycine--tRNA ligase [Frankia sp. CcI3] (GB:YP_480382.1); contains InterPro domain Heterodimeric glycyl-transfer RNA synthetase; (InterPro:IPR006194); contains InterPro domain Glycyl-tRNA synthetase, beta subunit; (InterPro:IPR002311); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Glycyl-tRNA synthetase, alpha subunit; (InterPro:IPR002310) -0.692305212661958 -7.71593469382168 4.33713590793379e-05 0.291282047576833 8.88246741713382 15.7256188564142 -0.692305212661958 0.0853864419296062
AT1G80770_at 7.76156140525208 7.72968549040932 7.49600824493841 7.3180869943485 7.42231268570802 7.26762885655906 8.0401576751894 7.86629805158061 7.88289784873599 7.88899142356857 6.60350923997239 7.54226043791273 7.1036588170762 7.29383264020899 7.08451317239032 7.60248646714407 7.21018047834465 7.07996637455937 7.90869568225017 0.135663740016642 0.134975671181243 0.134825457549106 0.136823866860189 0.131026153448793 0.138506598068214 0.134351179338761 0.134805069046460 0.148725223117686 0.135063434524432 0.141023691735862 0.131379303850113 0.130437476538968 0.132651121581959 0.143427423613361 0.130454733628241 0.13563632662345 0.136897901441173 0.130888330731616 1 1|0 +|/ 30361597 30362376 30362021.8 30360009 30362856 + gene protein_coding_gene FALSE TRUE AT1G80770.1 PDE318 (PIGMENT DEFECTIVE 318); GTP binding similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G50920.1); similar to predicted GTPase, containing NOG1 domain [Thermococcus kodakarensis KOD1] (GB:YP_183603.1); similar to Os08g0158900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061039.1); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Nucleolar GTP-binding 1; (InterPro:IPR010674) -0.588446912476587 -7.71564969100487 4.33833097474345e-05 0.291318924954023 8.88226920907636 15.1545070613162 -0.588446912476587 0.0509928115445911
AT2G40020_at 6.30566978314965 6.04385145886169 6.28383445926505 6.21562829194133 6.20635056003711 5.73824623634631 7.61287079828306 7.4300094550683 6.30804078928986 6.90509326597987 6.24369922924225 6.1543834501862 5.89934135381334 6.04921766834625 5.85076679799404 6.08638371221942 6.28452221591458 6.05432871200346 7.25504140946377 0.213014848490215 0.212554339234516 0.209302021533639 0.207691763247854 0.207945689251431 0.219633537073463 0.231732827112829 0.224371911771118 0.218180724796198 0.212964546051793 0.21206177724268 0.210783193832111 0.207691763247854 0.218689561338981 0.216434324202289 0.213534221649238 0.215837668985358 0.226908208512528 0.228098679978986 2 2|0 +|/ 16719216 16719858 16719642.1 16718057 16720148 + gene protein_coding_gene FALSE TRUE AT2G40020.1|AT2G40020.2|AT2G40020.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2); similar to Tropomyosin; Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE88541.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001076490.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G45248.2); similar to Tropomyosin; Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE88541.1) -0.740990124694727 -7.71515998106931 4.34038526377914e-05 0.291413466610131 8.88192861209099 12.9298354040571 -0.740990124694727 0.09877175019284
AT2G27170_at 5.77488447092114 5.51232993315426 6.03628724488771 5.86993599713808 6.26775177222756 6.33016976834179 5.59137518583969 5.46887498753551 4.44915150400561 3.98634301645274 4.49817062852264 5.11083826656747 5.26493104553928 4.89031418128615 4.31633301056765 4.93481666433619 4.49903373455857 4.72285816457785 3.8749365907569 0.179407239706564 0.175149878699608 0.178637215602056 0.176046818017877 0.175512595836677 0.171844997195226 0.173948239096941 0.171376714004248 0.169765207973450 0.175334752888038 0.175200724615873 0.168799102569360 0.174326727661171 0.173326414578023 0.179964225801644 0.168799102569360 0.184396396254233 0.174080660100078 0.188487226898114 2 2|0 -|/ 11618397 11619148 11618768.4 11616200 11624512 - gene protein_coding_gene FALSE TRUE AT2G27170.1|AT2G27170.2 TTN7 (TITAN7); ATP binding|TTN7 (TITAN7) cohesin similar to SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) [Arabidopsis thaliana] (TAIR:AT5G62410.1); similar to putative SMC3 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08001.1); similar to SMC3 protein [Oryza sativa] (GB:CAD59411.1); similar to putative SMC3 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08002.1); contains InterPro domain SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain SMCs flexible hinge; (InterPro:IPR010935) 0.607677488104431 7.70156860597235 4.3978307221707e-05 0.295226376379319 8.87246393503069 10.2980206695388 0.607677488104431 0.0588156585488011
AT2G28630_at 7.75993605330583 8.56558851798467 7.14829471581035 7.85765515948945 9.29818806829964 9.08942124090657 5.33810575353845 5.77519434408016 8.70812728397809 6.90010641768046 8.99436704076602 8.99352603926307 8.53457537748542 9.50268729959859 8.56241612989638 8.11523691228188 7.3264519257225 8.40613865192605 7.31586170942351 0.215905588337224 0.208035121920861 0.214912572985591 0.206694671196761 0.209368607518186 0.224540451293399 0.224506681753980 0.213208442924672 0.232743681496997 0.226837961677960 0.210158318295044 0.208942222237777 0.204832398548067 0.211773681234779 0.20841300333823 0.207468757585555 0.222671272621157 0.222042996953026 0.219381889092425 2 2 - 12282811 12283371 12283176.091 12282396 12284322 - gene protein_coding_gene FALSE TRUE AT2G28630.1 beta-ketoacyl-CoA synthase family protein Identical to 3-ketoacyl-CoA synthase 12 precursor (EC 2.3.1.-) (KCS-12) (Very-long- chain fatty acid condensing enzyme 12) (VLCFA condensing enzyme 12) (KCS12) [Arabidopsis Thaliana] (GB:Q9SIB2;GB:Q8LFQ0); similar to beta-ketoacyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G07720.1); similar to 3-ketoacyl-CoA synthase 3 (KCS-3) (Very-long-chain fatty acid condensing enzyme 3) (VLCFA condensing enzyme 3) (GB:Q9LQP8); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE84281.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE80003.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; (InterPro:IPR013747); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392) 1.20087170699468 7.69434481399447 4.42870422122696e-05 0.297254627328753 8.86742421443464 15.7019430112493 1.20087170699468 0.203800663477872
AT1G13960_at 6.70408940788265 6.87252059454117 7.08686095895856 7.0891380468022 7.28836623770489 7.4736603991065 5.94539475235638 6.16756090239806 5.81815112302683 5.78375168690067 6.08986143905713 5.73803334902098 6.03262156789066 6.36061409121888 6.27566150744565 6.15236033010153 6.609297003009 6.23195197030628 5.76556076008627 0.261444239600609 0.249401595405058 0.249989450887529 0.253096370282071 0.257227386110915 0.254946041312701 0.257594837595731 0.250171155817061 0.257431645376904 0.249991966679435 0.252999131264419 0.247040638789362 0.250687611952849 0.247650916527304 0.253199191733946 0.249634692033916 0.250797875052224 0.264308495616273 0.250104654242346 1 1|0 +|/ 4778246 4778999 4778712.4 4776460 4779397 + gene protein_coding_gene FALSE TRUE AT1G13960.1|AT1G13960.2 WRKY4 (WRKY DNA-binding protein 4); transcription factor Encodes WRKY DNA-binding protein 4 (WRKY4). Identical to Probable WRKY transcription factor 4 (WRKY DNA-binding protein 4) (WRKY4) [Arabidopsis Thaliana] (GB:Q9XI90;GB:Q93WN8;GB:Q9LMG1); similar to WRKY3 (WRKY DNA-binding protein 3), transcription factor [Arabidopsis thaliana] (TAIR:AT2G03340.1); similar to DNA binding protein WRKY2 [Vitis vinifera] (GB:AAT46067.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|similar to WRKY3 (WRKY DNA-binding protein 3), transcription factor [Arabidopsis thaliana] (TAIR:AT2G03340.1); similar to DNA binding protein WRKY2 [Vitis vinifera] (GB:AAT46067.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.604630315133407 7.69335829808452 4.43293899840489e-05 0.297494536182952 8.86673546631177 12.8161762527659 0.604630315133407 0.0579322229659068
AT2G07340_at 6.03112622438895 5.93823123479716 5.38715106020082 5.19690547478809 5.59402345878351 5.49607092813254 6.00620638405716 6.00237161296765 6.37924061403087 6.23384593711512 5.98108735826813 6.42762820475535 5.34960746041184 5.8135258408686 6.32015614646692 5.43439711317774 5.22193476909178 5.59172567500678 6.33639030685 0.131458114080044 0.126017341084002 0.125911778964842 0.127338523124055 0.122327206888383 0.129017826897972 0.123753061333908 0.125703746957606 0.131591270059177 0.128888510070873 0.122793364596930 0.125149507676914 0.126328912727739 0.12383152409351 0.124785225011351 0.126783869535978 0.129438120875381 0.123705077340550 0.122836533830069 2 0|2 /|+ 3045789 3046578 3046270.438 3045556 3046741 + gene protein_coding_gene FALSE TRUE AT2G07340.1|AT2G07340.2 prefoldin-related KE2 family protein similar to prefoldin-related KE2-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19818.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) -0.562465299284629 -7.68656676491277 4.46221438423673e-05 0.299414585182285 8.86199061354117 11.7485108507668 -0.562465299284629 0.0403749050015363
AT3G17950_at 5.03240377846202 4.87797220806395 5.01586273286177 4.77395559842597 6.0993898142089 5.63020932711811 4.56680133065933 4.54884242790331 4.49027204314646 4.88743187226274 6.12059268865107 5.57892035871405 5.88482941859103 5.6426601698117 5.68065717803019 5.41129618587672 5.06947626682977 5.5267604774398 4.98739418545865 0.234452316518845 0.234452316518845 0.245721805665381 0.238781004369403 0.25560238528391 0.236351323309467 0.239035421895811 0.240967933900133 0.242363307356234 0.236515704498614 0.235590135101365 0.234452316518845 0.234452316518845 0.259162102066529 0.236657717875912 0.235219442235397 0.242344589761328 0.234452316518845 0.23740801166289 3 0|3 /|+ 6146667 6146964 6146812.1 6146247 6147354 + gene protein_coding_gene FALSE TRUE AT3G17950.1|AT3G17950.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02440.1); similar to Os06g0256800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057317.1); similar to Os02g0733400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048034.1)|similar to Os06g0256800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057317.1) 0.724691245625983 7.68293732289312 4.47794683627592e-05 0.300425453245751 8.85945259510756 10.2695622155207 0.724691245625983 0.0952305558639098
AT3G25610_at 7.65659824446345 8.15819368303033 8.47268881564277 8.76131654606124 7.20245906124002 6.89326275416509 4.07242573933109 4.03723161839538 4.76530135063301 4.81513546078295 4.22647622731422 4.39508835372379 4.04637623072629 4.6566114706369 3.9291272800719 4.48390680315745 4.6902786399587 4.50133753919703 4.30014243396766 0.212100679904574 0.202425266048739 0.205841549655139 0.198813624713691 0.198261355037089 0.210166630213789 0.196922059234882 0.202270435867428 0.199293672044456 0.203425502086939 0.19793334833179 0.194038830177820 0.197421239493145 0.20203546179625 0.197174593062955 0.194038830177820 0.202754736894871 0.200092124298195 0.196911549295908 3 3 - 9310202 9310734 9310429.273 9310179 9314590 - gene protein_coding_gene FALSE TRUE AT3G25610.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 10 (EC 3.6.3.1) (Aminophospholipid flippase 10) (ALA10) [Arabidopsis Thaliana] (GB:Q9LI83); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G26130.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.795305021304649 7.6756391914648 4.50976760966942e-05 0.302515211256625 8.85434418107942 11.4032770910709 0.795305021304649 0.113709547889230
AT4G14320_at 10.1868329855627 10.0991076556155 9.48982778299229 9.53706559968862 9.28974791706506 9.36614036123077 10.0070058113045 10.0948932961301 9.80348476624098 9.88035461177764 9.4701194824500 9.79167870685766 9.23935471364312 9.302864268182 9.88245249100037 9.29089358831347 9.27619715779863 9.31829072846543 9.85123447708554 0.106277795436401 0.104228195946536 0.106502086348428 0.106812401226541 0.105261557890557 0.106945314797796 0.103776625624174 0.109460260318587 0.109519142377093 0.108700055149823 0.110599461908737 0.106340341301130 0.10543728321007 0.108703923874813 0.10446216653251 0.105659521412443 0.112934226607818 0.104155964610154 0.108348065737493 4 0|4 /|- 8242713 8243189 8243003.375 8242501 8243895 - gene protein_coding_gene FALSE TRUE AT4G14320.1 60S ribosomal protein L36a/L44 (RPL36aB) Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aA) [Arabidopsis thaliana] (TAIR:AT3G23390.1); similar to 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis] (GB:AAK94425.1); contains InterPro domain Ribosomal protein L44E; (InterPro:IPR000552) -0.537403874094111 -7.66683878059913 4.5484710259788e-05 0.305065951712398 8.84817545656973 19.4045806814271 -0.537403874094111 0.0265215293875130
AT2G35790_at 5.8881540752818 5.47377355346264 5.17703569991461 5.00742469296041 4.58464246854465 4.88855488159513 5.86885563781979 6.22743094446342 5.25581877048098 5.18918570837456 3.91377697201859 4.53582682781334 4.45771131783625 4.36487376634709 5.31118055948148 4.06444427693920 4.95399326764761 4.45099254940942 4.95637055677911 0.207183538847203 0.209842620266859 0.203574122289771 0.197702400406012 0.204713417724331 0.200557810099448 0.209430781720193 0.199280590623483 0.205684249571659 0.197702400406012 0.207388668386755 0.199644301844376 0.212507668476235 0.202164766390978 0.199841779118165 0.201609206203781 0.213558029362943 0.211650766080776 0.203991703842896 2 2 + 15048461 15049019 15048742.909 15047758 15049202 + gene protein_coding_gene FALSE TRUE AT2G35790.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO66526.1) -0.788665426680737 -7.6643131079164 4.55964633627583e-05 0.305769883310657 8.8464032911079 10.2096798046211 -0.788665426680737 0.112341419860683
AT1G14370_at 8.96364236100705 9.27675211722794 9.79088519596881 9.88425359133251 9.66918849463895 9.08580639511166 6.07533659617132 6.49136062571652 6.56886028081852 6.62981099083766 6.37583056447763 6.16210125852074 6.22108403522907 6.52216140901433 5.68827422960724 6.2479881211321 6.59019008801115 6.41707374009718 6.02570556736457 0.264404859835139 0.261610826698518 0.263431812673273 0.263124177252016 0.265763994010143 0.274580302037257 0.258762249966436 0.264417703133757 0.277175953147531 0.258762249966436 0.258762249966436 0.260497451201145 0.261776879880613 0.261536868095962 0.258762249966436 0.259856542383254 0.265105639283892 0.267890510315271 0.258762249966436 1 1 + 4917123 4917893 4917613.727 4915571 4918133 + gene protein_coding_gene FALSE TRUE AT1G14370.1 APK2A (PROTEIN KINASE 2A); kinase Encodes protein kinase APK2a. similar to APK2B (PROTEIN KINASE 2B), kinase [Arabidopsis thaliana] (TAIR:AT2G02800.2); similar to putative protein kinase [Solanum demissum] (GB:AAT40481.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.88786140599327 7.66332519514274 4.56402578649368e-05 0.306017928984401 8.84570989613065 14.9977599440309 0.88786140599327 0.136281623861236
AT2G41900_at 6.7099083168724 7.03199083835012 7.14624432015449 7.15229760801848 7.45656235498501 7.39366390219702 7.34102949378251 7.11405639548661 6.49125510237138 6.63729317993843 7.48745975958922 7.84548055634961 7.95996084167308 7.53260155326466 6.6477302645785 7.65703779545336 8.04103252317424 6.92872827667129 6.31847841964582 0.161900952731808 0.155102849459913 0.163835579880082 0.159450788474454 0.160723476716763 0.158965529281060 0.160339809485055 0.156891165905426 0.157940875528661 0.162554237869859 0.157237910787752 0.154772133051590 0.155274487228518 0.15876044750436 0.165119727427426 0.155410992844225 0.161924287026553 0.16259516399909 0.169881794981207 2 2 + 17500025 17500546 17500243.909 17497483 17501000 + gene protein_coding_gene FALSE TRUE AT2G41900.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT5G12850.1); similar to Os03g0698800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050982.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE84364.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38462.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.634053748787439 7.66120875970288 4.57342365715043e-05 0.306602321975365 8.84422400736063 14.1656422438956 0.634053748787439 0.0690587414127816
AT1G07010_at 8.47339859885585 8.7889116583553 8.7710017945213 8.87892163732278 8.33863391566243 8.18022889347349 10.1181593800654 10.3115897777516 9.38015236774106 9.75064282582743 8.96549247005007 9.04595563571223 9.1363268032595 9.33988133172762 8.79092736917606 9.61971078899 9.19555838132406 9.0998383636543 9.53528468706963 0.140642085621430 0.13277612865956 0.149549598055016 0.140196007107683 0.143391045166064 0.139011485095377 0.135849296614897 0.137004979340589 0.141209062598574 0.130338041105113 0.136623951778250 0.130338041105113 0.131979686102107 0.136253182610661 0.137740864137817 0.133327287311043 0.147522457482983 0.135336933121402 0.135248246962296 1 1|0 +|/ 2154065 2154918 2154396.7 2152886 2155268 + gene protein_coding_gene FALSE TRUE AT1G07010.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G18480.1); similar to putative protein-tyrosine-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAM22720.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.643483430369003 -7.66070629963543 4.57565793009611e-05 0.306706351054342 8.84387116284531 18.3348913836007 -0.643483430369003 0.0721251175145349
AT4G02370_at 10.5530457318048 10.9889509811228 11.0433168581391 11.0304557044233 11.2301198217716 10.8165204988313 9.68996843937395 9.80351020140237 9.75035210130813 9.0815665828008 10.0403749721799 9.9972274023765 10.3343889669483 10.3170459045636 9.6469842190489 9.97743873727158 9.85104010843556 10.1888388185301 9.03928465931685 0.129335130487605 0.129628089307130 0.136069461971350 0.13490769884222 0.133535674516570 0.133898433987451 0.136173403647716 0.127683785038119 0.146239984745833 0.140791364810985 0.138913075648681 0.132857189249263 0.128895469070511 0.129433431057489 0.141737948797257 0.132561429569031 0.153578186089993 0.134406498636556 0.142230121209594 4 4 + 1042472 1042931 1042740.818 1042338 1043206 + gene protein_coding_gene FALSE TRUE AT4G02370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02816.1); similar to Os05g0362300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055314.1); similar to Protein of unknown function, DUF538 [Oryza sativa (japonica cultivar-group)] (GB:AAX95409.1); similar to Os05g0362500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055315.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.762500329529693 7.65790615843445 4.58813132177685e-05 0.307496561185485 8.8419042344431 20.3117702824309 0.762500329529693 0.105851601903044
AT4G17810_at 5.48312043322417 6.14487374655714 3.65024486834498 4.32417578334349 5.17171309547463 5.25461296370046 7.10626563313651 7.13228878428905 6.62106080753723 6.41903373309513 6.65116329120785 6.87617508366314 6.63810136855751 6.87364957581418 6.40126536688338 5.83373253176856 5.14799341254243 6.39556702402507 6.47279332951979 0.281942409066489 0.272603908941327 0.297823614237297 0.302132397662239 0.274909285503805 0.291998791918575 0.282497219240156 0.271681706736622 0.269688165113714 0.268739911739848 0.273048902009259 0.269304780845262 0.271136354863926 0.268739911739848 0.287378989560596 0.273593066604955 0.283551378610116 0.276656068209794 0.279052606538213 4 4 + 9907026 9907509 9907191.182 9906861 9907670 + gene protein_coding_gene FALSE TRUE AT4G17810.1 nucleic acid binding / transcription factor/ zinc ion binding similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT2G37740.1); similar to zinc finger (C2H2 type) containing protein [Brassica oleracea] (GB:ABD65171.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -1.00927023574772 -7.64922648709621 4.62703459707529e-05 0.310057588350015 8.83580110340021 11.9616628702714 -1.00927023574772 0.164142135927324
AT3G50480_at 10.5716707906330 10.6167571443391 10.9179931156291 11.1060234688017 10.0480251385685 9.69079596130056 5.42748571306567 5.8423708626425 9.43333467730287 6.92903528085174 6.91373936666105 7.23187072763492 6.00649157149132 7.78079072511638 6.43279896094068 7.66923250926084 6.33095547958178 6.90934944016418 6.89827415967543 0.288682515651071 0.292575116197869 0.290680813518613 0.292762544306295 0.293740940027962 0.287422772461895 0.282304321685300 0.287118978278818 0.282342108459373 0.282304321685300 0.283347607166553 0.282304321685300 0.285383728425991 0.282304321685300 0.285078354740520 0.282304321685300 0.292312914031011 0.282304321685300 0.282304321685300 3 3 + 18744271 18744913 18744428.909 18744049 18745369 + gene protein_coding_gene FALSE TRUE AT3G50480.1 HR4 (HOMOLOG OF RPW8 4) Homolog of RPW8 similar to HR3 (HOMOLOG OF RPW8 3) [Arabidopsis thaliana] (TAIR:AT3G50470.1); similar to HRa [Brassica oleracea var. alboglabra] (GB:AAP45320.1); contains InterPro domain Arabidopsis broad-spectrum mildew resistance; (InterPro:IPR008808) 0.740996925867304 7.64829793120453 4.63121800989401e-05 0.310291606662898 8.83514763238169 16.6091160928141 0.740996925867304 0.100480635345593
AT4G27410_at 9.3906239115367 9.61770068881741 10.3304592491418 10.5014672789111 10.4952998390546 10.0927095013362 9.3442553270519 9.1230642161449 7.72584924413335 9.2585588145578 8.60913686896553 7.77753542084318 9.74876186181872 8.54806227521377 7.35902615344542 9.22352968657541 10.7549591044183 9.46829156711584 8.49285572153934 0.136848691945949 0.138727059163814 0.148434309763935 0.140689440455551 0.145036980997786 0.145299446912648 0.146290611213547 0.136848691945949 0.149080015690223 0.146918574119236 0.144471298867257 0.143653615791679 0.139948324662102 0.149616114499063 0.153116376773985 0.136848691945949 0.136848691945949 0.142815532576789 0.155016611248894 4 4 - 13708000 13708577 13708184.818 13707246 13709155 - gene protein_coding_gene FALSE TRUE AT4G27410.1|AT4G27410.2|AT4G27410.3 RD26 (RESPONSIVE TO DESSICATION 26); transcription factor|RD26 (RESPONSIVE TO DESSICATION 26) Encodes a NAC transcription factor induced in response to dessication. It is localized to the nucleus and acts as a transcriptional activator in ABA-mediated dehydration response. similar to ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15500.1); similar to NAC-domain protein 485 [Brassica napus] (GB:AAP35056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441)|similar to ANAC019 (Arabidopsis NAC domain containing protein 19), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52890.1); similar to ATNAC3 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 55), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15500.1); similar to NAC-domain protein 485 [Brassica napus] (GB:AAP35056.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.714907269222951 7.64698569385462 4.63713714140154e-05 0.310641817102489 8.83422396264522 18.5762395651875 0.714907269222951 0.0934834977476348
AT4G26130_at 8.9489307504339 9.17183587071015 9.32491672587452 9.41982776200473 9.47153190073885 9.41969539070018 8.59180080957596 8.85169848013829 7.48545097187051 7.24054969195846 7.87249002606742 7.80266034168171 8.53690986070478 8.31263346774114 7.72324557706536 7.66055929057169 8.28403502540572 8.13446189419463 7.27617528773153 0.178732426247655 0.177104750301139 0.180117320402799 0.176474399095913 0.177974476857186 0.178993457623916 0.175459714902660 0.173658631877841 0.176270051816882 0.177094939101154 0.173291505780554 0.174688887562253 0.172511717297924 0.176236837000258 0.174564605893198 0.172811472975202 0.180170351570777 0.175390809876574 0.176579411202812 4 4 - 13240583 13240953 13240802.273 13240015 13241292 - gene protein_coding_gene FALSE TRUE AT4G26130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56980.1); similar to cDNA-5-encoded protein (GB:AAA50235.1) 0.612371126011943 7.64444772554146 4.64860891317823e-05 0.311363825004678 8.83243690586198 16.8374962542467 0.612371126011943 0.0621381008603533
AT3G26935_at 4.79743057677239 4.47554794019344 4.93381604494154 5.08847499999214 5.14388873342496 4.99765338604739 5.12770991829696 5.28032330039317 4.52059618298815 4.12775850472732 5.75252614902171 5.56142507612416 5.56288175415285 5.3987869543461 5.74312043450975 5.29963743844587 5.41754547199 4.80631117448727 4.20034103625869 0.226372912053329 0.219658190100701 0.236691319607105 0.218145586229300 0.235116251277159 0.239567487788551 0.231971286607104 0.224106321966419 0.22203547971285 0.22218075633152 0.222448786152297 0.226165421993082 0.223372829454990 0.232963102082767 0.220579170952350 0.237413738109064 0.230308125285459 0.218145586229300 0.218145586229300 3 3|0 -|/ 9934520 9935185 9934823.444 9933837 9936734 - gene protein_coding_gene FALSE TRUE AT3G26935.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT5G41060.1); similar to Os09g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063622.1); similar to Os08g0535400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062355.1); similar to P0482D04.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB89658.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.64029304458209 7.63430113311661 4.6947861962221e-05 0.314409831560994 8.82528437920265 9.84344455315413 0.64029304458209 0.0718131912000235
AT2G45560_at 7.3892251926625 7.78697449369256 7.81352637884768 7.5054802904903 8.21646908633012 8.18356391525899 8.11153337301728 8.25878746011684 5.29902983401128 6.00812478830681 6.40679563076777 6.28041378739571 7.29559093481885 7.36953748424996 6.69623889448068 6.71028874066595 7.36637762212747 6.88287417765927 5.22505271928801 0.159352540865094 0.156479193606909 0.162712404670274 0.161661712899751 0.158311990082992 0.168995012629924 0.157436258975072 0.161818645777219 0.18147466683905 0.163618885933379 0.158342366953844 0.168072484697943 0.160645354115355 0.161835362949077 0.157918961266364 0.160989885747635 0.166303944478137 0.169771941390599 0.165302341087964 2 0|2 /|- 18784355 18784848 18784645.1 18783126 18785584 - gene protein_coding_gene FALSE TRUE AT2G45560.1|AT2G45560.2 CYP76C1 (cytochrome P450, family 76, subfamily C, polypeptide 1); heme binding / iron ion binding / monooxygenase cytochrome P450 monooxygenase Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); similar to CYP76C4 (cytochrome P450, family 76, subfamily C, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45550.1); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45570.1); similar to CYP76C6 (cytochrome P450, family 76, subfamily C, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G33720.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|Identical to Cytochrome P450 76C1 (EC 1.14.-.-) (CYP76C1) [Arabidopsis Thaliana] (GB:O64636;GB:O65783); similar to CYP76C2 (cytochrome P450, family 76, subfamily C, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45570.1); similar to cytochrome P450 [Verbena x hybrida] (GB:BAE72877.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.70420433317241 7.63247460722233 4.70315240985415e-05 0.314923085363834 8.8239954626475 14.1015702435801 0.70420433317241 0.0908929842065132
AT3G16950_at 5.59480572017209 5.02797190044945 3.14798897628752 3.27816089739233 4.24826184041745 4.77555731942333 6.41541509204834 6.71064330523865 5.03059891848482 5.19811553849472 6.09063990654538 6.05663907658347 5.30047478633957 5.75899556544956 5.82784872828566 4.55372759723212 5.31204642129557 5.55183401731313 5.74491519612669 0.226784040507518 0.222154952137472 0.230367485200729 0.233890643160303 0.223841905418104 0.224196008095145 0.223068071404603 0.226300242281929 0.220582426955491 0.226949967477835 0.220449458088228 0.22447673729054 0.221630890148362 0.22425267546357 0.223644637623225 0.233745675702801 0.226636211283044 0.223850029325625 0.220449458088228 3 3|0 -|/ 5786958 5787851 5787301.875 5786391 5790531 - gene protein_coding_gene FALSE TRUE AT3G16950.1|AT3G16950.2 LPD1 (LIPOAMIDE DEHYDROGENASE 1) encodes a plastid lipoamide dehydrogenase, subunit of the pyruvate dehydrogenase complex which provides acetyl-CoA for de novo fatty acid biosynthesis. The gene is highly expressed in developing seeds. similar to dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) [Arabidopsis thaliana] (TAIR:AT4G16155.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain CUB; (InterPro:IPR000859); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027)|similar to dihydrolipoamide dehydrogenase 2, plastidic / lipoamide dehydrogenase 2 (PTLPD2) [Arabidopsis thaliana] (TAIR:AT4G16155.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABD32316.1); similar to Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83195.1); similar to Pyridine nucleotide-disulphide oxidoreductase (ISS) [Ostreococcus tauri] (GB:CAL51905.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.921367100709245 -7.62243298677801 4.74944201511727e-05 0.317975142912101 8.8169019953338 10.3403851214700 -0.921367100709245 0.145143818539203
AT2G35635_at 8.6333124780077 8.74823272082054 9.40809604527043 9.34143039645269 9.10962386477968 9.03238677238775 8.9336788579273 9.03076531726622 8.33475531465181 8.33125199638108 9.00615130594455 8.58297073202968 8.89883842807549 8.87232184469644 8.6287598518671 9.17933815053247 9.0227234689352 9.14417040190192 7.99426987288008 0.127630222579914 0.128083743982956 0.135380243219734 0.133943835523022 0.133562496527277 0.143241864582728 0.126865282425428 0.133670178076386 0.139560821732804 0.132242513851773 0.131648414838837 0.128061136357076 0.125693416817684 0.132315418798127 0.128005465955304 0.124326628799326 0.130514979017490 0.128074570438062 0.135539937137193 2 2|0 +|/ 14988144 14988987 14988608.2 14988049 14989195 + gene protein_coding_gene FALSE TRUE AT2G35635.1 UBQ7 (RELATED TO UBIQUITIN 2) encodes a ubiquitin-like protein that contains tandem repeats of the ubiquitin coding region, but at least one repeat per gene encodes a protein with amino acid substitutions. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to NEDD8-like protein RUB2 precursor (Ubiquitin-related protein 2) (AtRUB2) (RUB2) [Arabidopsis Thaliana] (GB:Q8RUC6); Identical to NEDD8-like protein RUB1 precursor (Ubiquitin-related protein 1) (AtRUB1) (RUB1) [Arabidopsis Thaliana] (GB:Q9SHE7); similar to RUB1 (RELATED TO UBIQUITIN 1) [Arabidopsis thaliana] (TAIR:AT1G31340.1); similar to Os09g0420800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063199.1); similar to Os06g0650100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058221.1); similar to polyubiquitin 2 [Deschampsia antarctica] (GB:AAM22748.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.541601902288700 7.62175148080492 4.7526017823906e-05 0.318139163313227 8.81642011836711 17.5981916404318 0.541601902288700 0.0314570921239128
AT4G22380_at 5.97054276984057 6.11934617826151 6.52837781738377 6.45202715832942 6.19231625968817 6.49183387091089 5.7900038645968 6.26047537980486 4.42554070054943 4.87046501468928 5.7996855313134 6.13512074033151 5.66743194648253 5.50007026999994 6.17590477480386 5.82490796035946 6.25356866211139 5.070149800322 4.8335545878466 0.198926659287813 0.200706684703939 0.194694295189078 0.204008409231842 0.197259799209071 0.205107309082379 0.214526730327733 0.191434823344662 0.202370439029174 0.198279321835722 0.200228435902001 0.190165140722042 0.191858194301580 0.202645075088511 0.200893731200411 0.195436535751293 0.194499942662299 0.202954367717583 0.199070400334265 4 4 - 11812128 11812908 11812571.364 11811762 11813012 - gene protein_coding_gene FALSE TRUE AT4G22380.1 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein similar to ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] (TAIR:AT5G20160.1); similar to Os03g0241200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049514.1); similar to ribosomal protein L7 [Hyacinthus orientalis] (GB:AAT08750.1); contains InterPro domain High mobility group-like nuclear protein; (InterPro:IPR002415); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) 0.737274127402932 7.59893728279119 4.85972969625957e-05 0.325261708570653 8.80025516911689 11.4822196098906 0.737274127402932 0.100762721757165
AT1G13570_at 5.38203326166799 5.36747940957644 5.09741321051308 5.37950875251395 6.28815936985144 6.13513242539531 3.90707707134421 4.36944329148459 4.57690093788972 4.90349645713092 5.79733147734983 5.24058672342112 5.19707040153466 5.15050608785688 5.57613277514665 5.32426360125006 5.10592612638241 5.21664028353086 5.05805328424591 0.229869921217108 0.215573053101738 0.216205555914378 0.211502572413329 0.215191637940162 0.216686751034642 0.212895262745005 0.222277907847927 0.226802009203846 0.219163978440044 0.212681671340279 0.214941979856231 0.216356037741398 0.214687354030684 0.208891238755677 0.212882190416528 0.215853686628781 0.215277070031609 0.221846333286340 1 1|0 -|/ 4642560 4643171 4642894.6 4642343 4644419 - gene protein_coding_gene FALSE TRUE AT1G13570.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G56370.2); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85825.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.724226069593507 7.5922715965726 4.891530730341e-05 0.32734123647442 8.79551988578966 10.326884554534 0.724226069593507 0.0974329227311852
AT3G49350_at 7.58302725302322 7.55028424508924 7.82615603305274 7.59641764965966 7.04114115839591 7.26571620201963 5.86321311323251 5.89376089479239 6.22392571274891 5.78142410998265 5.8637235389902 6.53721184906286 6.30177225468139 6.34275736403796 5.88900423264986 6.49792842561613 6.83732239586629 6.69216663829076 5.68340897205429 0.217462480671855 0.217462480671855 0.22168304601935 0.222697067941640 0.217462480671855 0.235451216187533 0.217462480671855 0.222856481860164 0.229282222704066 0.219739579868076 0.229286882264592 0.217462480671855 0.218210221556577 0.217462480671855 0.226574060134495 0.217462480671855 0.224821463301176 0.231618911191189 0.226377729008908 3 3 - 18308668 18309219 18308905 18308391 18311174 - gene protein_coding_gene FALSE TRUE AT3G49350.1 RAB GTPase activator similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G24390.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE88406.1); similar to Os09g0528800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063739.1); similar to Os08g0547200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062427.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.591884645025897 7.59143200776166 4.89555255182648e-05 0.327561421242709 8.79492304843882 13.2107089531555 0.591884645025897 0.0561345548037703
AT2G24600_at 6.4510606247982 6.5295929728894 6.03468035834264 6.32887096185934 5.79836543183362 6.0783882921935 3.66245123391185 3.23218217077602 6.53248042126298 4.49416511823991 6.16858321401214 6.988936157647 3.90002628183282 6.3871929875178 5.97005857545495 5.02549706916796 4.6243071789456 6.0920002918615 4.70854025781289 0.237637824281715 0.239199251552119 0.248005326872779 0.241790039244329 0.240155668559398 0.242606484111454 0.255181772528461 0.272988317229966 0.244801450414973 0.239217024037459 0.237637824281715 0.238715605915197 0.254089545069837 0.238125335550552 0.241335227636956 0.242682598192805 0.245028909622892 0.238645871780487 0.245394540895750 2 2 - 10459524 10460237 10459811 10459195 10461603 - gene protein_coding_gene FALSE TRUE AT2G24600.1|AT2G24600.2|AT2G24600.3 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G10340.1); similar to Ankyrin [Medicago truncatula] (GB:ABE80931.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.745383898789893 7.5841494389758 4.9305912679035e-05 0.329856555822744 8.7897423781553 10.9592675818224 0.745383898789893 0.103291994385237
AT1G01940_at 5.99673826391188 5.92687585551453 6.16192871890284 5.73796680819064 6.46197852442459 6.47205175095392 5.43082812314576 5.45780187909947 4.53712816354114 4.24580442676681 5.18671761963551 5.8840657533151 5.6538503490956 5.19261637320331 5.82679358100398 5.37819924257754 5.11608538921308 4.72525810434343 4.9882813104285 0.219309888632426 0.222118143484409 0.223620398460921 0.220970804380300 0.216929790236472 0.216237477464805 0.221210664773865 0.215308966248137 0.222021733981323 0.225341564518342 0.215308966248137 0.217230718391031 0.218207649125414 0.215308966248137 0.219249384088521 0.215308966248137 0.226129805687234 0.217185619518739 0.222546558452784 1 1 + 323211 324679 323995.9 323027 324917 + gene protein_coding_gene FALSE TRUE AT1G01940.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G67530.1); similar to Peptidyl-prolyl cis-trans isomerase-like 3 (PPIase) (Rotamase) (GB:Q5KHA8); similar to Os06g0130500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056690.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.642732044084858 7.56247241215704 5.03653513721681e-05 0.336893835328432 8.77428222733102 10.9361977080816 0.642732044084858 0.0745248032556908
AT3G58750_at 8.7379691340312 8.81538433838156 8.86153449753855 8.89695446561195 9.44548200640006 9.04678285501263 8.09769948139534 7.78822991080611 7.79782015584828 7.2515239359968 8.1935495358125 8.10944095891427 7.74853772268236 8.46439340340709 8.3954680024032 7.90544698613042 8.04438210960346 8.31783527607965 7.36404210187745 0.160929472743543 0.160929472743543 0.163693929906169 0.162302986167498 0.165741131255713 0.165815472987905 0.162904468868590 0.163122217932923 0.172330058677819 0.181185252060637 0.162949266721488 0.167695929192587 0.166488373805483 0.163524828243533 0.167466931043612 0.161259331088457 0.166287168654463 0.161421813017543 0.170534085205182 3 3|0 -|/ 21735546 21736463 21736017 21735291 21738667 - gene protein_coding_gene FALSE TRUE AT3G58750.1 CSY2 (CITRATE SYNTHASE 2); citrate (SI)-synthase Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. Identical to Citrate synthase 2, peroxisomal precursor (EC 2.3.3.1) (CSY2) [Arabidopsis Thaliana] (GB:Q9LXS6;GB:Q570I4); similar to CSY3 (CITRATE SYNTHASE 3), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT2G42790.1); similar to CSY1 (CITRATE SYNTHASE 1), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58740.1); similar to Os02g0232400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046373.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); contains InterPro domain Citrate synthase; (InterPro:IPR002020); contains InterPro domain Citrate synthase I; (InterPro:IPR010953) 0.689560379062764 7.56222361238376 5.03776561068559e-05 0.336925764042653 8.77410443787381 16.5205098264572 0.689560379062764 0.0885762874334248
AT3G46620_at 8.45812641711327 8.59812344421272 8.85751096470587 8.87631113767426 8.19202019634502 8.20267261841795 7.45320727946694 7.6324716451913 7.33252191492294 6.58015437587441 7.64831282893188 7.85044377247034 7.33970267420865 7.4911292493075 7.58235767712098 7.56012239017145 6.69185210400998 7.24319869905658 6.54698736158758 0.167837909561316 0.173290978064832 0.176040623571221 0.180178255076829 0.172482155864827 0.176750812965169 0.169817815392864 0.173326750580383 0.184959519451115 0.184446733609743 0.171854766654690 0.168069441710522 0.175124776893335 0.176533259470166 0.169166090177920 0.171270511960456 0.179833634732623 0.170229473882533 0.178876619590995 3 3 - 17189905 17190352 17190133.273 17189682 17191052 - gene protein_coding_gene FALSE TRUE AT3G46620.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G59550.1); similar to Zinc finger, RING-type; Thioredoxin-related; RINGv [Medicago truncatula] (GB:ABE81988.1); contains InterPro domain Protein of unknown function DUF1117; (InterPro:IPR010543); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.551324286535542 7.55679599586467 5.06469138054124e-05 0.338675912616793 8.77022397738229 15.4066943671599 0.551324286535542 0.0395390337090345
AT1G76160_at 6.63995271520512 6.80667749435326 2.15120759134029 2.46715159212445 4.17005779499761 4.431862244055 5.83768344292987 6.8757948385417 8.50676259305138 6.90309040321788 9.67066571469117 9.77971662364556 8.0932246779725 8.63334239527903 9.92809528477024 8.23741599292003 5.04170679995116 8.49535972385572 7.17783616328329 0.243571009201494 0.240431572227759 0.245523862666389 0.247602214797528 0.229426824582064 0.23576540839453 0.241247626069239 0.239482288872562 0.241637967553949 0.242957698379626 0.235022252479266 0.234729184989899 0.229426824582064 0.24231083872033 0.230137869115447 0.230762407532183 0.244712076218367 0.237156906216585 0.234718649624073 1 1|0 -|/ 28583119 28583827 28583467.8 28582836 28586027 - gene protein_coding_gene FALSE TRUE AT1G76160.1 SKS5 (SKU5 Similar 5); copper ion binding / oxidoreductase similar to SKS6 (SKU5 Similar 6), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G41830.1); similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS7 (SKU5 Similar 7), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21860.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -1.13962306767166 -7.55630279478316 5.06714595525107e-05 0.338789378568086 8.76987117981972 12.9296337749367 -1.13962306767166 0.195316902836223
AT4G22820_at 8.32503303586486 8.55562986204134 9.62533924782184 9.68760824711666 9.68414812962934 9.415260881583 9.32808763942488 9.12740468406482 8.2841258537135 8.70572257035024 8.89302555516379 8.19613407932539 9.2181694027847 8.83219171970879 7.91103708715131 9.21175839519523 9.38610957548255 9.08737457067202 8.05243094333828 0.123043748122679 0.124299005535783 0.118430154633965 0.116929065269685 0.117283925076891 0.119817516746653 0.116215956509725 0.116171927323923 0.125406613595287 0.123670344062433 0.118249113590705 0.119629123505562 0.119381984993299 0.123914967869446 0.125680226695936 0.116378309512278 0.118199442061215 0.119412332535958 0.126672263202856 4 4 - 11987961 11988369 11988134.818 11987716 11989017 - gene protein_coding_gene FALSE TRUE AT4G22820.1|AT4G22820.2 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 9 (AtSAP9) (SAP9) [Arabidopsis Thaliana] (GB:O49663); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT4G12040.2); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.631799456786765 7.55278913156928 5.08467088213693e-05 0.339910248470853 8.76735688830372 17.8132647179364 0.631799456786765 0.0712738034137
AT2G34620_at 9.17030466887833 9.29665840998075 6.78069072491323 7.92802286104264 7.95745404043493 8.16192493471325 10.4673771844589 10.7768555649574 10.7432535787268 10.7128398504035 10.6430651141799 10.6835381279267 9.90808584338573 10.5069374073022 10.9526857204455 10.5224024803965 9.7071459157512 10.7572551945277 10.4931990390397 0.109787517852457 0.107045949704424 0.158895901973267 0.124249883085289 0.124517429681840 0.114867572753634 0.109048846965452 0.112539865344648 0.111748238959477 0.106592920088284 0.105024776907814 0.105024776907814 0.105024776907814 0.105024776907814 0.110403331510275 0.105024776907814 0.115005521883534 0.105024776907814 0.105024776907814 2 2|0 +|/ 14584600 14585258 14584837.8 14584275 14585367 + gene protein_coding_gene FALSE TRUE AT2G34620.1 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G03050.1); similar to mTERF-like protein [Brassica napus] (GB:ABC70867.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -1.20520024868002 -7.54096628881804 5.14413215973843e-05 0.343833793556917 8.75888526380754 19.3723628644455 -1.20520024868002 0.209812027730835
AT2G13790_at 6.94455773844654 6.80003785703812 7.47296470568538 7.1450151581168 6.1120781555199 6.37135735937014 5.13592757949234 4.60177745217227 3.75147435271614 2.75394766957420 3.78227241240672 4.50290667561428 4.1729759161183 3.78593626491894 3.45629330814086 3.47599396415276 3.83483561247230 3.98667930441393 2.99480690696764 0.508193489397631 0.538584214265343 0.538367390933199 0.533751726539712 0.522341958247321 0.508193489397631 0.508457522501026 0.508193489397631 0.508193489397631 0.519286329662782 0.52531616190376 0.508193489397631 0.555462921917112 0.508193489397631 0.508193489397631 0.508193489397631 0.508193489397631 0.511004841792102 0.516287854875966 2 2 + 5749333 5749557 5749450.5 5748902 5753875 + gene protein_coding_gene FALSE TRUE AT2G13790.1 ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4); protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase similar to SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G34210.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK5 (SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5), ATP binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13800.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase [Cocos nucifera] (GB:AAV58833.2); similar to somatic embryogenesis protein kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:AAU88198.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.806386196873087 7.53991557904487 5.14945357293743e-05 0.344137982279409 8.75813152290844 9.84370433007973 0.806386196873087 0.120017990277835
AT1G11310_at 10.5982042800632 10.5105291964954 11.1209500119691 10.9506888694290 10.6918511246925 10.4349218022478 9.16281186128866 9.10254569592706 10.0744011768996 9.35874970197803 9.752627534549 10.0012616625009 9.65185743210802 9.9417810640739 9.50735035706835 9.93365220728438 9.61614204463968 10.1207769726330 9.35189835401 0.109171054108788 0.105879483348922 0.10808092862919 0.108262904665634 0.106948309010230 0.109108899263389 0.107172313207267 0.107006720543427 0.105673003119243 0.107239778524774 0.107345769229156 0.103231928751534 0.109853476111437 0.114326069314255 0.109074334704645 0.106578616434816 0.119787776345957 0.103231928751534 0.106248585710546 1 0|1 /|- 3800941 3801707 3801166.556 3800742 3804185 - gene protein_coding_gene FALSE TRUE AT1G11310.1 MLO2 (MILDEW RESISTANCE LOCUS O 2); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO2 belongs to the clade IV, with AtMLO3, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in roots, in vascular system of cotyledons and young leaves,and in fruit abscission zone; it was not expressed in anthers and pollen, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). mlo resistance in A. thaliana does not involve the signaling molecules ethylene, jasmonic acid or salicylic acid, but requires a syntaxin, glycosyl hydrolase and ABC transporter. Identical to MLO-like protein 2 (AtMlo2) (MLO2) [Arabidopsis Thaliana] (GB:Q9SXB6); similar to MLO6 (MILDEW RESISTANCE LOCUS O 6), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G61560.1); similar to MLO12 (MILDEW RESISTANCE LOCUS O 12), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G39200.1); similar to MLO1 [Lotus corniculatus var. japonicus] (GB:AAX77015.1); similar to MLO1 [Capsicum annuum] (GB:AAX31277.1); similar to MLO1 [Brassica rapa] (GB:AAX77014.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.588372471017827 7.53665296358305 5.16601614104772e-05 0.345193198544808 8.75579014817063 20.0269116404240 0.588372471017827 0.0564276209539566
AT1G76600_at 5.84630816069035 6.52173240834309 6.98776962831161 7.5845107583803 6.41984877008797 6.66754473746718 4.49468277744786 4.90548105415316 4.46236836265746 3.93592111425161 4.83071908278079 4.96738755447553 4.74235605473078 4.60729913902006 4.87850415692979 4.45989372966924 4.63412592584892 4.60924980519756 3.86416010849012 0.265871965797533 0.274701960965391 0.282420844888850 0.283413681262986 0.277313921569039 0.282975386031996 0.269045398441285 0.267789356234026 0.272427379925125 0.266090861406743 0.265351691435509 0.265351691435509 0.265351691435509 0.265351691435509 0.277431776709623 0.265351691435509 0.265351691435509 0.266892488342898 0.267876516764529 1 1 + 28751970 28752457 28752175.545 28751782 28752739 + gene protein_coding_gene FALSE TRUE AT1G76600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21010.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAB41200.1) 1.05078805467583 7.53543323156866 5.17222316535868e-05 0.345556229677614 8.75491447574362 10.5803223499675 1.05078805467583 0.176685880054464
AT1G80850_at 3.97924221755589 4.77693184412117 3.03012545992524 3.58942651048706 3.19250412578019 3.32434509002519 5.19802816070536 5.0732237703653 5.42363077320554 5.50726768143188 4.40753671884044 5.74748599728186 4.77392041810707 5.124012175816 5.67566858054907 5.49399821295574 4.30166803875592 5.10540322108628 6.05017705775654 0.248368126376836 0.248368126376836 0.258364780854154 0.264479118247482 0.257801742420858 0.264091251881843 0.263261455382593 0.248408081980026 0.281099272496097 0.252371435288820 0.253016536838287 0.253690420436105 0.250212239842685 0.248368126376836 0.251111051882566 0.252802264914128 0.252942357818702 0.256509215659689 0.257272393520811 1 1 - 30390530 30391742 30390929.182 30390341 30392414 - gene protein_coding_gene FALSE TRUE AT1G80850.1 methyladenine glycosylase family protein similar to methyladenine glycosylase family protein [Arabidopsis thaliana] (TAIR:AT1G15970.1); similar to Protein prenyltransferase, alpha subunit [Medicago truncatula] (GB:ABE92847.1); contains InterPro domain Methyladenine glycosylase; (InterPro:IPR005019); contains InterPro domain DNA glycosylase; (InterPro:IPR011257) -1.02720151766989 -7.53485771383666 5.1751547422926e-05 0.345700336785146 8.75450123328441 9.39001348464836 -1.02720151766989 0.171497484521245
AT3G56880_at 9.32665498152979 9.329784545944 9.22413047288 9.3515079642072 10.0377672175836 9.91516565296786 9.0920349406921 9.30306733441435 9.33188632767994 9.03988570514701 10.3442885835032 10.1949085067611 9.8780161458764 10.2868635238247 9.84614835887323 9.34370759626126 9.40775935567402 9.75198914178591 8.98058404087644 0.110337487408072 0.108681339052302 0.111361243115493 0.108681339052302 0.111003360165878 0.117889179213928 0.110923375769772 0.108681339052302 0.140374599332165 0.113334110369916 0.108681339052302 0.108681339052302 0.112189622210886 0.108800986773231 0.109740739157965 0.108681339052302 0.118086613423792 0.117905746249233 0.110932081095771 3 3 + 21071261 21071709 21071532.727 21070894 21071944 + gene protein_coding_gene FALSE TRUE AT3G56880.1 VQ motif-containing protein similar to ATCAMBP25 (ARABIDOPSIS THALIANA CALMODULIN (CAM)-BINDING PROTEIN OF 25 KDA), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G41010.1); similar to VQ [Medicago truncatula] (GB:ABD32874.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.566757751633394 7.53379852196874 5.18055485701861e-05 0.346009258900273 8.7537405853757 18.9470952268462 0.566757751633394 0.0476452629313115
AT3G29270_at 6.76597295760316 6.8989439346509 7.15324472015223 7.01371067116536 7.85389043923832 7.59503183123775 6.78385141543229 6.45653736438425 5.1573465976442 5.5667626727251 5.8719579763542 5.7635405563506 6.33712173876415 6.27170308598307 5.85104098277415 6.2829494487947 6.58000892084992 5.68189760591628 5.61062944982286 0.205370471125056 0.188874436586065 0.19638065144942 0.185403041144013 0.188225424929458 0.197129063895011 0.188291751917713 0.193303819489756 0.204588948458875 0.195343107102357 0.184288366340965 0.185478484415162 0.183484247868563 0.190688754026015 0.197332991144600 0.187023811654387 0.192942265624038 0.204832045129041 0.184201592238048 3 3 + 11236827 11237249 11237060.818 11235479 11237695 + gene protein_coding_gene FALSE TRUE AT3G29270.1|AT3G29270.2 ubiquitin-protein ligase| similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G69330.1); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.656378815086714 7.53325839080656 5.18331102058067e-05 0.346141509954377 8.75335264076679 12.8276181398351 0.656378815086714 0.0795474329950227
AT1G72300_at 6.2627691906589 6.51690323772959 6.37018903826181 6.72913696322208 6.19285313814106 6.65997661343055 7.61713925809473 7.79908953442472 7.20699996013167 7.21921457309841 5.99710898736448 6.08216518034901 6.51883987820898 6.32218254215182 5.647644506677 6.77220237289616 6.4202640652398 6.56681209034227 7.48596243934119 0.157873664232432 0.172507953440486 0.163280308005098 0.163419080898933 0.164671431309759 0.167981583144589 0.165544858887581 0.165392254669063 0.173966819672865 0.171907115224883 0.160771016209802 0.163574373285358 0.158200534817416 0.162374386771766 0.167551607855501 0.164343352187909 0.166604258298318 0.160994080389653 0.163403988670036 1 1 - 27221451 27221841 27221667.636 27221139 27224785 - gene protein_coding_gene FALSE TRUE AT1G72300.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17240.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53890.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G17250.1); similar to putative leucine-rich repeat receptor-like kinase [Oryza sativa (indica cultivar-group)] (GB:AAU12600.1); similar to putative leucine-rich repeat receptor-like kinase [Oryza sativa (indica cultivar-group)] (GB:AAU12603.1); similar to leucine-rich receptor-like protein kinase [Daucus carota] (GB:AAL99366.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.787046452458253 -7.53121524931587 5.19375134452688e-05 0.34678677727406 8.75188483635668 13.5659878436258 -0.787046452458253 0.115407866682131
AT3G16250_at 9.2160932798044 9.3467758129661 7.8428696291574 7.56000586198716 8.76305247674616 8.56902972724552 9.98710386953134 9.7555338664869 9.99064939409451 9.89352864201573 10.1172074202131 10.3677596289775 9.70060688775757 9.88380616819962 10.6780547177699 10.1487559870247 9.06033721750397 10.0845441152007 9.80308707371642 0.128545260161127 0.122503567086395 0.131013554952556 0.135348464546077 0.126756666707924 0.123957588028078 0.124186509802093 0.125849000628419 0.131844769256277 0.128046041229649 0.121880128065414 0.125755395574719 0.124097785619961 0.126362326032128 0.130557881553533 0.121880128065414 0.134928463966601 0.125210004626745 0.128557733162718 3 3|0 -|/ 5507314 5508265 5507853.9 5506937 5508420 - gene protein_coding_gene FALSE TRUE AT3G16250.1 ferredoxin-related similar to ferredoxin-related [Arabidopsis thaliana] (TAIR:AT4G32590.1); similar to Ferredoxin [Medicago truncatula] (GB:ABE80924.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.641629151095553 -7.52793079355978 5.21058338367335e-05 0.347858546694033 8.74952415230291 18.8305025927105 -0.641629151095553 0.0751063877765397
AT1G79560_at 6.64850782719503 6.4758896667921 5.46354162825077 5.40576218431613 6.17068544432158 5.49757982789599 6.35150078833943 6.01164361339213 5.50888415251322 6.16435346282137 4.34865769184931 5.07088442440399 4.53918282896818 4.41644906664989 5.98245729200917 5.26256686629591 5.89239319418144 4.5061622488747 6.30165169062387 0.192511432963878 0.18899520633267 0.189163257625305 0.194725670082291 0.193893940477353 0.191689088803721 0.194122285398215 0.18899520633267 0.191405756228839 0.192639665777315 0.198260686729784 0.18899520633267 0.195379991545141 0.199426116475798 0.189419488269804 0.191448995426603 0.193630551430504 0.197327285236751 0.193862426238863 1 1|0 +|/ 29936091 29937162 29936664.2 29931687 29937478 + gene protein_coding_gene FALSE TRUE AT1G79560.1 EMB1047/FTSH12 (EMBRYO DEFECTIVE 1047); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FtsH protease that is localized to the chloroplast similar to FTSH1 (FtsH protease 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT1G50250.1); similar to Peptidase M41; AAA ATPase [Medicago truncatula] (GB:ABE92053.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.86338938486615 -7.52626246651902 5.21915620490452e-05 0.348378676677377 8.74832452611631 11.5001258577163 -0.86338938486615 0.134238399388175
AT1G42550_at 8.4198125750319 8.34838650496685 8.48142345942405 8.10938596740137 8.5877393515436 8.26613997204472 9.36002901667429 9.33865645586858 10.0012087283462 10.4614000103963 9.35022681633366 9.62605841510731 9.69503760300682 9.31585456087802 9.02562176143826 10.0913218895143 9.74019479203087 9.00000060364073 10.5197084022061 0.128248753842951 0.117556833951380 0.119661070861250 0.128515856055848 0.119865055790098 0.124416426858649 0.122412714085343 0.118924917487640 0.120905757186712 0.117285026757183 0.121618462043474 0.119432211282703 0.118272262765988 0.126316972789915 0.124651942392652 0.119583722870002 0.117285026757183 0.117285026757183 0.119855182517537 1 1 + 15981619 15982002 15981810.273 15979855 15982392 + gene protein_coding_gene FALSE TRUE AT1G42550.1 PMI1 (PLASTID MOVEMENT IMPAIRED1) Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20610.1); similar to Os09g0553900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063884.1); similar to Os10g0539700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065181.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72608.1) -0.676224221135558 -7.51050304251705 5.30090963105126e-05 0.353782708776361 8.73697507436127 18.5179359639827 -0.676224221135558 0.0860756094977415
AT1G12810_at 6.02176261041503 6.58985809298213 6.898240409801 7.32755448177438 7.47283535970322 7.00338597545225 6.2699349738719 5.86903756657262 4.79652348748916 4.68477631507322 5.52741635074469 5.50391530971083 5.27323892370003 5.88298571344398 5.42785391800455 5.81592216531601 6.067411517488 5.9021446028218 4.59493740231010 0.249875743157276 0.249945404751559 0.256717421024734 0.245266586640776 0.252935788631169 0.278406876538108 0.243247673019589 0.262938821483442 0.2507656516916 0.252933554151938 0.251759013921332 0.245924864770123 0.24935896670333 0.240361421075342 0.241889280642640 0.241000988267541 0.250903209687177 0.257814775193308 0.250418276137643 1 0|1 /|+ 4367556 4368478 4367728.8 4367254 4368820 + gene protein_coding_gene FALSE TRUE AT1G12810.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G49840.1); similar to Os09g0510000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063632.1); similar to conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] (GB:ZP_01203978.1); similar to Os08g0536400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062364.1) 0.9854438700426 7.50409620799923 5.3345488706892e-05 0.35597444614109 8.7323520125957 11.8651712492938 0.9854438700426 0.163089170797748
AT2G40540_at 8.77386415299313 8.9896662984643 7.80585762799526 7.85837903807486 8.54666640211568 8.67101581124179 9.10377509639512 9.1720027229648 9.308373270683 9.17360107005395 9.16872234517518 9.17643996903356 8.86404896322402 9.0122298178208 9.03613460668615 8.81344289887872 8.56519498667519 8.78759283663094 9.29301808690715 0.118654868079788 0.122501922672576 0.137353931667054 0.136012460481831 0.114956060036266 0.122665165718478 0.122623065863799 0.119544762862745 0.116675095219938 0.121116569249795 0.120095973781992 0.120085313733168 0.119967990475318 0.119897910135947 0.118693776600744 0.120532516231715 0.124212859845078 0.115390324577589 0.124731813835024 2 2 + 16941003 16941532 16941220.909 16937942 16941666 + gene protein_coding_gene FALSE TRUE AT2G40540.1|AT2G40540.2 KT2 (POTASSIUM TRANSPORTER 2); potassium ion transporter|KT2 (POTASSIUM TRANSPORTER 2) putative potassium transporter AtKT2p (AtKT2) mRNA, Identical to Potassium transporter 2 (AtPOT2) (AtKUP2) (AtKT2) (POT2) [Arabidopsis Thaliana] (GB:O22881;GB:O22398); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to KUP2 [Vitis vinifera] (GB:ABE98260.1); similar to potassium transporter HAK2p [Mesembryanthemum crystallinum] (GB:AAK53759.1); similar to Putative potassium transporter 8 (OsHAK8) (GB:Q8VXB5); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.559851177023284 -7.50229739875837 5.34403586884515e-05 0.356554073169349 8.73105308004332 17.7083066998958 -0.559851177023284 0.045604697665172
AT1G18450_at 7.987881489933 8.28064065279822 7.65235646339036 7.83209109280667 7.96164796153216 7.91502536313427 8.0004764539755 7.98865037918917 7.96026440735857 7.5392309930096 6.84321460703769 6.88312093917419 6.92488759699894 6.84115908585035 6.50649150119856 6.95092073354972 7.19468234262354 6.80179932057131 7.99899282575209 0.198494762219582 0.203186934675639 0.203845922387016 0.199038283779030 0.203645216940620 0.211433222758881 0.208993964090637 0.205712259885181 0.214790383212838 0.204470408680859 0.20344856886398 0.19913993845364 0.203011369086246 0.211470249795492 0.209943311068588 0.201227764621570 0.204621131781534 0.220764846669582 0.198494762219582 1 1|0 +|/ 6350143 6351721 6350885.875 6348100 6351966 + gene protein_coding_gene FALSE TRUE AT1G18450.1 ATARP4 (ACTIN-RELATED PROTEIN 4); structural constituent of cytoskeleton Encodes a gene similar to actin-related proteins in other organisms. Member of nuclear ARP family of genes. Component of chromatin remodeling complexes, involved in chromatin-mediated gene regulation. Phenotype of the arp4-1 mutant allele revealed partial sterility due to defects in anther development. Targeting the distinct, 3' UTR of AtARP4 transcripts with RNA interference caused a drastic reduction in the level of AtARP4 protein expression, and resulted in strong pleiotropic phenotypes such as altered organization of plant organs, early flowering, delayed flower senescence and high levels of sterility. Western blot analysis and immunolabelling demonstrated a clear correlation between reductions in the level of AtARP4 expression and severity of the phenotypes. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to Putative Acttin-related protein 4 (ARP4) [Brassica oleracea] (GB:AAW81736.1); similar to Os08g0137200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060954.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.594338458294663 -7.49130068029637 5.40243942665868e-05 0.360396734152401 8.72310327680623 15.3029031943861 -0.594338458294663 0.0600292648370499
AT3G23390_at 9.81173789401508 9.95001717644479 9.24512064744723 9.29766260237377 9.37947281932563 9.19513231077581 10.2377322797549 10.3951782792371 9.66900364733962 9.57482196195099 9.36016579867145 9.85633155135439 9.19183867050486 9.22607655025734 9.89730327089003 9.01980389564466 8.8011867682521 9.0666798183937 9.60333700100575 0.0885619973849286 0.092847776725335 0.091369276692419 0.0911329280143452 0.0921490904471146 0.0928687880286175 0.0916482292297206 0.0893915974143774 0.0932579429060225 0.0882666950629981 0.094084757895821 0.0923387006374647 0.0896299346618692 0.0948432664037105 0.0911336206324687 0.0914755363888341 0.103546338815469 0.0927252725014806 0.0889366520977594 3 3|0 +|/ 8375707 8376185 8375937.75 8375382 8376399 + gene protein_coding_gene FALSE TRUE AT3G23390.1 60S ribosomal protein L36a/L44 (RPL36aA) Identical to 60S ribosomal protein L36a (RPL36AB) [Arabidopsis Thaliana] (GB:O23290;GB:Q7GD84); similar to 60S ribosomal protein L36a/L44 (RPL36aB) [Arabidopsis thaliana] (TAIR:AT4G14320.1); similar to 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis] (GB:AAK94425.1); contains InterPro domain Ribosomal protein L44E; (InterPro:IPR000552) -0.566308445992543 -7.48222173888511 5.45118867106919e-05 0.363594284360315 8.71652821298944 19.1480788314692 -0.566308445992543 0.0491464529189736
AT3G61770_at 5.98026318078514 6.5281135417492 5.76681849553609 5.56805395579371 5.43219822069611 5.39337507224738 7.15788224296092 7.45671965741944 6.76482500976916 6.17301391374867 6.19339347641669 6.57838432248276 6.00115860599965 6.10577508157557 6.19435289627030 6.29494706994843 5.86002232890556 5.88905634968025 6.40354740399033 0.211839961149601 0.207695736578922 0.217073584674281 0.212838000770483 0.210186161511370 0.210267393718371 0.205540513666367 0.208297922760937 0.225087716152431 0.202792540121109 0.209653687218447 0.203829053205105 0.213233077310356 0.208992951489157 0.218179894446713 0.206705144776503 0.220682934920432 0.205370128350751 0.218417233657073 3 3 + 22875958 22877193 22876398.909 22875518 22877382 + gene protein_coding_gene FALSE TRUE AT3G61770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os05g0534100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056147.1); similar to hypothetical protein DSY2350 [Desulfitobacterium hafniense Y51] (GB:YP_518583.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) -0.774062864543252 -7.47701936775996 5.47934135815036e-05 0.365417275175048 8.71275583754658 12.4538105670215 -0.774062864543252 0.11354000270344
AT1G67830_at 6.05798141802953 6.45121947487116 4.15618488432172 4.09200181912747 4.66945098285812 4.91374786397827 5.33264189165956 5.94622770174446 5.57605132715410 5.85635870552241 5.25653688215652 6.68816576851334 5.50843746362822 5.64814157234067 6.16540173235509 6.0840356595177 4.47802702915042 5.58903386859575 6.25651280439454 0.213250351723398 0.208965737092658 0.209606672238710 0.204514822856892 0.215035465334052 0.219781410890816 0.209430655739880 0.212071200007173 0.240498678524468 0.203204168527056 0.212425808448479 0.208334888149614 0.203204168527056 0.204621286813820 0.212797923909044 0.207811826811824 0.220895202173723 0.224223464291200 0.215861409693327 1 1 - 25435424 25436017 25435644 25435249 25436653 - gene protein_coding_gene FALSE TRUE AT1G67830.1 ATFXG1 (ALPHA-FUCOSIDASE 1); alpha-L-fucosidase/ carboxylic ester hydrolase Encodes a protein with α-fucosidase activity. The activity was assessed on 2'-fucosyl-lactitol. AtFXG1 was able to remove the t-fucosyl residues of XXFG xyloglucan oligosaccharides. Identical to Alpha-L-fucosidase 2 precursor (EC 3.2.1.51) (Alpha-L-fucoside fucohydrolase 2) (Alpha-1,2-fucosidase) (AtFXG1) (FXG1) [Arabidopsis Thaliana] (GB:Q9FXE5;GB:Q681W5); similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G26430.1); similar to Os07g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060129.1); similar to hypothetical protein [Zea mays] (GB:BAD89850.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.854128174664794 -7.47305959248337 5.50087726039683e-05 0.366798495723261 8.7098821719068 10.9891970592684 -0.854128174664794 0.133479357195693
AT1G56180_at 6.4982954204639 6.25111907600977 5.25547682722166 5.28803922057157 5.92623363942311 6.50764012333403 6.5723748747276 7.01888543679629 6.10170762729895 6.14735030459591 5.01698703796856 5.14375056663679 5.43188085199006 5.27276198059746 4.7432941400649 5.55935371156695 5.5454582956011 4.8957553788153 5.96173837554334 0.230643499130763 0.224657226358500 0.228822028056101 0.227663726976630 0.228284950586758 0.223820990406103 0.232224879524555 0.223820990406103 0.232368572180447 0.226543622892458 0.22694704114585 0.228580609118260 0.223820990406103 0.226943340023346 0.228320945665187 0.224807830840426 0.223820990406103 0.229119831519061 0.225815013298931 1 1|0 -|/ 21029958 21030844 21030440.1 21029569 21031729 - gene protein_coding_gene FALSE TRUE AT1G56180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27290.1); similar to Os02g0169000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046019.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81004.1) -0.854965719884693 -7.4615220600952 5.56416042060004e-05 0.370962575241404 8.70149772708093 11.8004684179274 -0.854965719884693 0.133998589246944
AT1G09970_at 10.1008083912300 10.099234654413 10.6301479306431 10.8329004324008 10.1741186086164 9.63008906132794 8.52502655417135 8.6814190369094 8.44286824929663 8.1679847230005 8.68724229925064 8.67365284220987 8.49808756207876 8.63164937584643 8.37453852537829 9.46125982004197 8.20694624836456 8.72110524350728 7.84079480786993 0.128426768840856 0.126977776746863 0.128580201753362 0.133115704219895 0.131261570661931 0.131793029614089 0.130760543397039 0.126977776746863 0.145984804890183 0.144420631225976 0.134292136488556 0.126977776746863 0.130758160306708 0.144114677419018 0.130050193422255 0.127114836637974 0.138950652163792 0.131898726091638 0.145070568795909 1 1 + 3254694 3255355 3254961.455 3252242 3255695 + gene protein_coding_gene FALSE TRUE AT1G09970.1|AT1G09970.2 leucine-rich repeat transmembrane protein kinase, putative similar to IKU2 (HAIKU2), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G19700.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G49660.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28309.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99940.1); similar to clavata-like receptor [Picea glauca] (GB:ABF73316.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.73572641429757 7.4568860260172 5.58981487124613e-05 0.372617059317267 8.69812384765222 18.2378978335342 0.73572641429757 0.104054333036113
AT3G54640_at 10.1260617117212 9.9215343708193 11.0519363689852 10.9135188980914 9.98649955180522 9.70816055774192 9.04816067275005 8.47061784205336 7.59556205784094 8.31926368585225 8.25988119137479 8.99904393913424 7.92583282784447 8.5655779786497 8.52459160229833 8.5714795009034 8.36811512184865 8.4419054388804 7.76914330721541 0.167297797730748 0.167297797730748 0.168070764205423 0.167623163209402 0.171990507959527 0.170136302091111 0.168014963353642 0.175218334931682 0.179890393828744 0.182208511393456 0.175713247323345 0.167618521635491 0.173098484294388 0.171493089494214 0.174423205461107 0.174191990647139 0.178231761720611 0.174470039662815 0.177905853087399 3 3|0 -|/ 20234311 20235547 20235071.3 20234126 20236501 - gene protein_coding_gene FALSE TRUE AT3G54640.1 TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN); tryptophan synthase Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2). similar to tryptophan synthase, alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT4G02610.1); similar to tryptophan synthase, alpha subunit (TSA1) [Isatis tinctoria] (GB:CAH56477.1); contains InterPro domain Tryptophan synthase, alpha chain; (InterPro:IPR002028); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009) 0.792916147316915 7.45573199885223 5.59622118729528e-05 0.372988142133230 8.69728357253587 18.0791661469558 0.792916147316915 0.118894869777350
AT2G45660_at 9.0335031432498 9.43916511035797 9.79314826136343 9.90537883432716 10.3084324457620 9.8963089053713 9.69483714773853 9.5469993191025 8.90376167626665 8.72901936597743 9.60753525389697 9.49702356296592 9.6309865951153 9.81048438829154 8.81612607140197 10.2001200324462 9.91752117886106 8.91224469147118 8.22286317112454 0.178097249960185 0.182332599521246 0.185770240425306 0.177648788438137 0.177222452808294 0.185539566046025 0.176956379786981 0.181763630679420 0.188394152236100 0.199940273705966 0.179277378662036 0.175764367971727 0.181411854539542 0.186433399072226 0.198145931589553 0.175764367971727 0.184830003149443 0.193230023085887 0.202752007572419 2 2|0 -|/ 18814882 18817152 18816102.125 18814612 18818121 - gene protein_coding_gene FALSE TRUE AT2G45660.1 AGL20 (AGAMOUS-LIKE 20); transcription factor Controls flowering and is required for CO to promote flowering. It acts downstream of FT. Overexpression of (SOC1) AGL20 suppresses not only the late flowering of plants that have functional FRI and FLC alleles but also the delayed phase transitions during the vegetative stages of Identical to SUPPRESSOR OF CONSTANS OVEREXPRESSION 1 protein (Agamous-like MADS-box protein AGL20) (SOC1) [Arabidopsis Thaliana] (GB:O64645); similar to AGL42 (AGAMOUS LIKE 42), transcription factor [Arabidopsis thaliana] (TAIR:AT5G62165.3); similar to MADS-box protein [Cardamine flexuosa] (GB:AAP20424.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.738824041138585 7.44844026367167 5.63688736027145e-05 0.375642173688489 8.69197031325026 18.7859982923737 0.738824041138585 0.105102633937086
AT3G18680_at 8.9237679373732 9.01681622046448 8.25005332505 7.99843230059657 8.83067848709612 8.48591340319038 8.73401566560441 8.4215200039271 8.1599585931476 8.60977596389833 6.7020574932937 7.39519587041609 7.7346245501169 7.15683292062435 8.27066530741365 7.89664769551033 8.16797225381124 6.85665863312152 8.8138144768147 0.155801307187444 0.150620484193774 0.146379774644308 0.15033774776324 0.146875531760137 0.152844091027283 0.153649017089936 0.157737248929587 0.152836584638629 0.147169313951360 0.164387169416267 0.154010543912190 0.155535748760243 0.158935405875495 0.145928257810865 0.147796809250585 0.152832438045855 0.158114190577219 0.146010100294542 3 3 + 6428693 6429433 6429096.545 6427409 6429698 + gene protein_coding_gene FALSE TRUE AT3G18680.1 aspartate/glutamate/uridylate kinase family protein similar to aspartate/glutamate/uridylate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G10030.1); similar to Os01g0965400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045493.1); similar to uridylate kinase [Synechococcus sp. JA-3-3Ab] (GB:YP_475807.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Uridylate kinase; (InterPro:IPR011817) -0.694014207637051 -7.4437217317883 5.66337643061496e-05 0.377350771571875 8.68852841019331 16.6078654271588 -0.694014207637051 0.0929494665951001
AT2G03780_at 6.27552163624371 6.52400892063171 6.05905212572425 5.91299945543285 6.55494815052315 6.38552677998236 6.82534569156342 6.97186329399861 6.02319397893552 6.15197911557506 5.18168551018639 5.18087282502634 5.78376897879211 4.83469386354587 5.32932522228863 5.7556271934844 5.84466517808372 5.14241230166572 6.296895222607 0.214476392335301 0.204435131189275 0.205718774199137 0.215155055482272 0.203830922276853 0.211693036876747 0.209189141801079 0.202092365400312 0.206435029123273 0.202092365400312 0.205693048391594 0.202092365400312 0.207227624734988 0.208436311072 0.203162442205931 0.20910494100163 0.216973712843483 0.205215833240559 0.211330874239412 2 2|0 -|/ 1152724 1153497 1153177.1 1152464 1154288 - gene protein_coding_gene FALSE TRUE AT2G03780.1 translin family protein similar to Translin [Medicago truncatula] (GB:ABE92343.1); contains InterPro domain Translin; (InterPro:IPR002848) -0.598388989632713 -7.43430174694866 5.71667043951673e-05 0.380844584680604 8.68164845778 12.2081520016825 -0.598388989632713 0.0631704807000884
AT3G29090_at 7.22716054487458 7.31881448506302 7.0017116673562 6.99589864403318 6.9326939835398 7.11941540678664 7.57495341989308 7.51761286729956 6.83822747302977 7.07472416162956 5.8210397650827 6.05263495631204 6.38884302281892 6.27584730420724 6.10598111906539 6.38316177741576 6.73811302526945 6.17562418489009 6.85105995461094 0.209389210433191 0.206460228875377 0.206592195392057 0.202312495751342 0.206173240813955 0.208717435885891 0.210564861807339 0.207511833237402 0.224430123238627 0.206816758546970 0.204361265313873 0.205802712184508 0.211464795792908 0.202273491010596 0.209242717375076 0.202273491010596 0.206110138333518 0.214963700531798 0.202273491010596 3 3|0 +|/ 11075691 11076512 11076129.222 11074942 11076715 + gene protein_coding_gene FALSE TRUE AT3G29090.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G19730.1); similar to Pectinesterase [Medicago truncatula] (GB:ABE86764.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) -0.537943477947167 -7.42948834547063 5.74411589698016e-05 0.382615559897849 8.67812852482 13.7930290477588 -0.537943477947167 0.0373521824833575
AT4G32150_at 9.73054524178325 9.76822516434615 10.3189178003206 10.2120308369662 10.6819934982115 10.6637237244057 9.10066759126513 9.14076639282426 9.89930791987914 9.52944283665637 9.90166716293769 9.38099790913726 9.90199956329455 9.74372637288621 9.42063943380954 9.7655909357075 9.6855146371641 9.8626545277327 9.71364170064484 0.094756532279768 0.093599343813623 0.0954479124096657 0.0936834933897326 0.0949302698668024 0.0957768760667838 0.0953709712675578 0.094946040288498 0.0970444191051633 0.0960986736549407 0.0947582863460948 0.0929405562033647 0.0931786444297005 0.0941176650880537 0.0971474099259982 0.0922543686040271 0.105158370652072 0.0950573430047714 0.0979368960862445 4 4|0 -|/ 15526445 15527573 15527242 15526119 15527885 - gene protein_coding_gene FALSE TRUE AT4G32150.1 VAMP7C (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7C) AtVAMP711 is a member of Synaptobrevin-like AtVAMP7C, v-SNARE (soluble N-ethyl-maleimide sensitive factor attachment protein receptors) protein family. SNAREs have been divided into four subgroups: Qa-, Qb-, Qc- and R-SNAREs. R-SNAREs are classified into three groups, the Sec22-, YKT6- and VAMP7-like R-SNAREs. One R-SNARE and three Q-SNAREs (one of each subgroup) form the trans-SNARE complex, which governs specific membrane fusions. VAMP7 proteins consist of three distinct domain, the N-terminal longin-domain (LD), the SNARE motif (SNM) and a transmembrane domain. In spite of the high similarities among the VAMP7 proteins, they show different subcellular localizations. VAMP7C is vacuolar-localized and its LD is essential for the correct localization. Generally, it is suggested that the complete LD is the determinant of subcellular sorting in both animal and plant R-SNAREs. Identical to Vesicle-associated membrane protein 711 (AtVAMP711) (v-SNARE synaptobrevin 7C) (AtVAMP7C) (VAMP711) [Arabidopsis Thaliana] (GB:O49377); similar to ATVAMP712 (Arabidopsis thaliana vesicle-associated membrane protein 712) [Arabidopsis thaliana] (TAIR:AT2G25340.1); similar to Lon (GB:ABE77680.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.513916683097443 7.4261404777545 5.76329075987557e-05 0.383835164607713 8.67567853487425 19.6630985997123 0.513916683097443 0.0210432607011771
AT2G26400_at 6.55763199743427 6.7635386531839 9.149532462561 9.32613343904772 4.04451181089479 4.34487218726182 4.0992625990869 4.21277236200595 3.94750399703507 3.94865039877572 3.30268842219619 3.55259487260251 4.33728830423635 3.70735389513285 3.56635439434346 3.92426632618811 3.98148977524184 4.18584547532058 3.73401788165033 0.28404841408887 0.312618154349469 0.326394376122401 0.314851395105301 0.286262279641334 0.27506151810094 0.287280741905036 0.283489559310031 0.283738092750411 0.293240790586836 0.275506048246922 0.283069268353655 0.27506151810094 0.279976298666448 0.284876065702474 0.279091009493773 0.288473274462051 0.283932096672904 0.284580240245423 2 0|2 /|- 11239142 11239977 11239505.857 11238878 11240369 - gene protein_coding_gene FALSE TRUE AT2G26400.1 ARD/ATARD3 (ACIREDUCTONE DIOXYGENASE); acireductone dioxygenase (Fe2+-requiring)/ heteroglycan binding / metal ion binding Encodes a protein predicted to belong to the acireductone dioxygenase (ARD/ARD?)family. Identical to 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 1 (EC 1.13.-.-) (Aci-reductone dioxygenase 1) (ARD1) [Arabidopsis Thaliana] (GB:O48707); similar to ATARD2, metal ion binding [Arabidopsis thaliana] (TAIR:AT4G14710.2); similar to ARD-like protein [Brassica juncea] (GB:AAR03591.1); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Acireductone dioxygenase, ARD; (InterPro:IPR004313) 0.625486081342137 7.42409296013305 5.7750526820616e-05 0.384560758098482 8.67417943331927 9.91051157675693 0.625486081342137 0.0727419131046262
AT1G76920_at 8.52536712771182 8.6669226576526 8.8938918391431 8.9513760299237 9.35486333090264 9.22195314684344 8.39345913372239 8.70399126030897 8.37768515050636 7.55723136534198 8.93409206524331 8.70515179192794 8.76235806371618 8.67837032490538 8.5949386720883 8.94686114169913 8.70869475313078 8.76355435611383 8.3516418284423 0.137746682303636 0.132594691893743 0.136996198009534 0.137442789808853 0.135558296609628 0.140636543614908 0.136767597684629 0.134477490212575 0.162173183469359 0.162321413779995 0.143235308571399 0.135841803372922 0.138466323074347 0.143154978384916 0.134583763068749 0.132594691893743 0.142144234660463 0.138052197268451 0.141099703895337 1 1 + 28897741 28898263 28897976.182 28896956 28898570 + gene protein_coding_gene FALSE TRUE AT1G76920.1 F-box family protein (FBX3) similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G61590.1); similar to H0701F11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86135.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.599659619930249 7.41596931744275 5.82198043711591e-05 0.387627457503178 8.66822630507114 17.2676141128761 0.599659619930249 0.0641558520552859
AT1G68520_at 10.3792484066633 10.4364061865977 9.51499355239837 9.52845476561623 10.5220848756313 10.1122156040401 10.0160038295487 10.1183726637269 10.149213420722 10.3707649471544 9.26179353593 9.36153106048955 9.05221472590791 9.43014431200802 9.27096695154518 9.6241462330651 9.16039437794727 8.95398741228565 10.0860460751928 0.136850883221492 0.136562031551295 0.138715106872590 0.133549220284706 0.135653228305568 0.135269382814194 0.138024979026381 0.135077861505736 0.146128774038208 0.133549220284706 0.140937674629011 0.135031128770949 0.140903237482856 0.147122624655639 0.146507217159277 0.137819266024121 0.150906294663839 0.148281259802712 0.133549220284706 1 1|0 -|/ 25712996 25713691 25713423.1 25712777 25714570 - gene protein_coding_gene FALSE TRUE AT1G68520.1 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 6 (COL6) [Arabidopsis Thaliana] (GB:Q8LG76;GB:Q93Y24;GB:Q9CA29); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G25440.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15937.1); similar to Os06g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057333.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.627840696877518 -7.41316132640584 5.83829903911016e-05 0.388655567033563 8.66616657489117 19.8116752224464 -0.627840696877518 0.0738114991085729
AT1G50840_at 6.70457674361001 6.57357983386342 6.3446259760521 6.21404364721187 6.88683745739434 6.40894424398038 7.65296344051974 7.1677444035475 7.02347589202041 7.44580169441794 5.59276678954544 6.18829945447232 6.23498415970373 5.9854500818366 6.01714646611303 6.75629063314952 6.61310015468526 6.07820317286388 7.19564053797233 0.223194572795972 0.224747403301627 0.22077297876951 0.227340893349983 0.221480190420321 0.217391247526346 0.216948530799735 0.216171962578241 0.225969208421235 0.218365626894847 0.237051148765789 0.219233476562523 0.223273537676818 0.225721892652934 0.236505975886666 0.216171962578241 0.224393991122736 0.229895980151199 0.217970105671817 1 1|0 +|/ 18847154 18847951 18847479.444 18842775 18848227 + gene protein_coding_gene FALSE TRUE AT1G50840.1 POLGAMMA2 (polymerase gamma 2); DNA binding / DNA-directed DNA polymerase DNA Polymerase gamma2. Dual targeting to mitochondria and plastids due to alternative translation initiation. similar to POLGAMMA1 (polymerase gamma 1), DNA binding / DNA-directed DNA polymerase [Arabidopsis thaliana] (TAIR:AT3G20540.1); similar to DNA polymerase [Nicotiana tabacum] (GB:BAE45851.1); similar to DNA polymerase [Nicotiana tabacum] (GB:BAE45850.1); similar to PolI-like DNA polymerase [Oryza sativa] (GB:BAB40805.2); contains InterPro domain DNA polymerase A; (InterPro:IPR002298); contains InterPro domain DNA-directed DNA polymerase; (InterPro:IPR001098); contains InterPro domain 3'-5' exonuclease; (InterPro:IPR002562); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.799731267491415 -7.3994380564042 5.91878094665885e-05 0.393954059809613 8.65608547727166 13.4466242126973 -0.799731267491415 0.122126991419202
AT4G36220_at 8.68813030643052 8.39493865466401 8.53110187912378 8.44652290437413 8.84738586779369 8.62066039619627 6.97261617898888 7.44079717135525 6.82548487712225 7.76098147966843 8.23701291909751 8.83404175392765 7.93697245743306 8.11949157841609 8.42629083497805 7.17401256408437 8.03667589791044 7.70003141897679 7.413142137606 0.157870875617742 0.160471558971243 0.157891652186637 0.167284730330320 0.162965097561043 0.160521137228001 0.168218387477275 0.166336362867728 0.184006290222668 0.165546270397241 0.162425819549018 0.159629222564144 0.163986583439168 0.170640974734944 0.177927583763016 0.16496705033887 0.172447289360113 0.165899554702714 0.171375643752798 4 4 - 17137620 17138156 17137872.091 17137347 17139638 - gene protein_coding_gene FALSE TRUE AT4G36220.1 FAH1 (FERULATE-5-HYDROXYLASE 1); ferulate 5-hydroxylase encodes ferulate 5-hydroxylase (F5H). Involved in lignin biosynthesis. Identical to Cytochrome P450 84A1 (EC 1.14.-.-) (Ferulate-5-hydroxylase) (F5H) (CYP84A1) [Arabidopsis Thaliana] (GB:Q42600); similar to cytochrome P450, putative / ferulate-5-hydroxylase, putative [Arabidopsis thaliana] (TAIR:AT5G04330.1); similar to cytochrome p450-dependent monooxygenase [Brassica napus] (GB:AAG14962.1); similar to cytochrome P450 [Isatis tinctoria] (GB:ABL07485.1); similar to cytochrome p450-dependent monooxygenase [Brassica napus] (GB:AAG14961.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.73108026532487 7.39801743560362 5.92718202232494e-05 0.394453963585725 8.65504049133036 15.9384036746501 0.73108026532487 0.104366860090210
AT2G41220_at 7.90644086605973 7.95535651915391 8.26949937602674 8.66788678394111 8.11654387024999 8.10986707319443 7.3039134380973 7.32337943291137 6.69944436286582 6.93781834777906 7.33179443318934 7.47795526175111 7.47551924048689 7.69504534556876 7.0867382152507 7.9034085159135 8.1190543238571 7.64712793592391 7.46334091805932 0.169312230785282 0.167442621643084 0.168831589409235 0.174257351146994 0.176906804113497 0.166871418449969 0.174107305719343 0.181053343807261 0.176604137086729 0.171328183887060 0.177989552948180 0.168598798941744 0.170649417528498 0.175762480386761 0.181184454465105 0.171869893547358 0.170548279397048 0.168941334093821 0.177502572483199 2 2|0 +|/ 17194652 17195400 17195021.222 17184742 17195829 + gene protein_coding_gene FALSE TRUE AT2G41220.1 GLU2 (Glutamate synthase) Encodes a gene whose sequence is similar to ferredoxin dependent glutamate synthase (Fd-GOGAT). Expression is most abundant in root. Identical to Ferredoxin-dependent glutamate synthase 2, chloroplast precursor (EC 1.4.7.1) (Fd-GOGAT 2) (GLU2) [Arabidopsis Thaliana] (GB:Q9T0P4;GB:O80665); similar to GLT1 (NADH-dependent glutamate synthase 1 gene) [Arabidopsis thaliana] (TAIR:AT5G53460.1); similar to GLU1 (FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT5G04140.1); similar to Ferredoxin-dependent glutamate synthase [Medicago truncatula] (GB:ABD28330.1); similar to Ferredoxin-dependent glutamate synthase, chloroplast (Fd-GOGAT) (GB:Q43155); similar to ferredoxin-dependent glutamate synthase (GB:AAA18948.1); contains InterPro domain Ferredoxin-dependent glutamate synthase; (InterPro:IPR002932); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Glutamate synthase, central; (InterPro:IPR006982); contains InterPro domain Glutamate synthase, alpha subunit, C-terminal; (InterPro:IPR002489); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583) 0.613611288944379 7.39665240666357 5.93526673998106e-05 0.394932648878339 8.6540361502499 15.2694183959014 0.613611288944379 0.0695517808353014
AT2G38050_at 5.93401453399664 5.96384956916360 5.79210994196629 5.95205960221168 6.62012510848793 6.5145178387 5.18320524944613 5.32101343164496 5.17889209626518 5.67592395002081 6.08121845442903 6.26326036992576 5.99511453864415 6.10671880898022 5.70227436221438 6.5908144151362 5.89168792866022 5.87942398774444 5.94609809212788 0.227616408422243 0.236539875257647 0.228175148386622 0.228201040333756 0.240756207777747 0.243898335437702 0.234863652861709 0.227255427472497 0.244723894579663 0.232374798710551 0.226842852044268 0.232481298043259 0.228379360084928 0.232579380512997 0.234923639123864 0.228330819785752 0.253780570723701 0.231714051601248 0.225445876695078 2 2 - 15928381 15929006 15928636.636 15928214 15929391 - gene protein_coding_gene FALSE TRUE AT2G38050.1 DET2 (DE-ETIOLATED 2) Similar to mammalian steroid-5-alpha-reductase. Involved in the brassinolide biosynthetic pathway. Identical to Probable steroid reductase DET2 (EC 1.3.99.-) (DET2) [Arabidopsis Thaliana] (GB:Q38944;GB:Q9SH83); similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT5G16010.1); similar to steroid 5-alpha-reductase [Gossypium hirsutum] (GB:AAZ83346.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.541345911095411 7.37651113075449 6.05598324937563e-05 0.402904565580960 8.63918864910355 11.7421713199629 0.541345911095411 0.0411775612997362
AT1G79950_at 6.92349516860125 7.1189043827296 6.38164323700558 6.1953053520739 6.68474932826414 6.58436924016542 6.668875913862 6.71157833281938 5.81650666121034 5.78461645849227 4.95901898577786 5.51043810726366 4.84944378886898 5.37798666384676 5.38682466739575 5.62323582590615 5.20782996537513 5.33945963328771 6.42234710853644 0.211984962133136 0.203930213846956 0.211824201892850 0.203930213846956 0.204494765800060 0.212085997741896 0.203930213846956 0.20787400370906 0.206379074266312 0.208416667661679 0.205739358955415 0.207744570219357 0.205936722152867 0.205414883608358 0.211704066894239 0.207708084578687 0.2131712523416 0.216820160588706 0.209140166148842 1 1 + 30083773 30084358 30084096.727 30078473 30084430 + gene protein_coding_gene FALSE TRUE AT1G79950.1 helicase-related similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20750.1); similar to helicase-related [Arabidopsis thaliana] (TAIR:AT1G20720.1); similar to DEAH helicase isoform 5-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52706.1); similar to Os01g0592900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043456.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain DEXDc2; (InterPro:IPR006554); contains InterPro domain Helicase c2; (InterPro:IPR006555); contains InterPro domain DEAD_2; (InterPro:IPR010614); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain DNA repair helicase Rad3; (InterPro:IPR013020) -0.560120182411782 -7.36248927887625 6.14162143891664e-05 0.408540658116735 8.6288208861434 12.3034166765043 -0.560120182411782 0.0503961290077748
AT4G24120_at 6.70967384062946 6.8559466023849 6.58781758855356 6.63809208795125 5.45128583192108 4.95419661687791 6.9369890411271 7.47151699380463 5.64233126572268 5.5496835655178 5.75627615363813 3.28965229338066 4.32185495813235 4.88263813568336 4.37403462909176 4.75413258108609 4.59221927962944 5.45035973328386 4.52459395677577 0.276403736136949 0.278234853561825 0.270308331503364 0.280737610157564 0.273403469331613 0.284953766440699 0.276345260524191 0.274154496578543 0.279314440517232 0.284775637859384 0.269217342703694 0.269217342703694 0.276651130811090 0.283427959557542 0.274229996608925 0.269217342703694 0.285215993205479 0.278779752124582 0.280925280936000 4 4 + 12526490 12526949 12526729.364 12524501 12527351 + gene protein_coding_gene FALSE TRUE AT4G24120.1 YSL1 (YELLOW STRIPE LIKE 1); oligopeptide transporter Member of a small family of oligopeptide transporters similar to the yellow stripe locus of maize (ZmYS1). similar to YSL2 (YELLOW STRIPE LIKE 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G24380.1); similar to YSL3 (YELLOW STRIPE LIKE 3), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53550.1); similar to YSL6 (YELLOW STRIPE LIKE 6), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G27020.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABD04075.1); similar to putative YS1-like protein; VvYS1 [Vitis vinifera] (GB:AAT09976.1); similar to YSL transporter 3 [Thlaspi caerulescens] (GB:ABB76763.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.823453606837641 -7.35971502161318 6.15872295759397e-05 0.409616663909575 8.62676654737822 11.4089476086543 -0.823453606837641 0.129124881608044
AT1G57765_at 5.13961515580695 5.41205675887509 5.71522633724805 6.10079867221377 6.22549008559975 6.24417240486604 5.24873639279842 5.48074061327108 5.95070336622488 4.81490064837072 6.84683032435594 5.96957477722326 5.74251150998500 6.56542837572426 5.66434696969356 5.93746857966445 5.51659495201941 5.53861544582083 5.33219074391268 0.213784387155382 0.217207136848062 0.207102970361000 0.219186037837609 0.213612100451061 0.201987436005735 0.202727094434539 0.218253438471701 0.251726203779181 0.21752535855979 0.201820755784690 0.201820755784690 0.228182406132813 0.216851947689791 0.202916679540684 0.208553893663691 0.236290259638131 0.203534899461894 0.202329659219719 1 1 + 21397164 21398078 21397893 21397016 21398627 + gene protein_coding_gene FALSE TRUE AT1G57765.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09645.1); similar to Os05g0419600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055573.1) 0.678937212717715 7.35122000499558 6.21141679109345e-05 0.413059216607714 8.62046970427593 11.3651560290750 0.678937212717715 0.0910907937535008
AT3G09200_at 11.1380473112653 11.4277999573962 10.6211618499918 10.7045792237207 10.6149740301195 10.4721085976614 11.1339624988076 11.4476714851942 11.2041661291199 10.9575920639984 10.3682559159452 10.6069287377214 10.3879059195452 10.3219155432866 10.7938492828896 10.1318783613850 10.3497890064081 10.1961168020020 10.8059017978416 0.0647866555141948 0.0637339351100153 0.0680400678147345 0.0655100039812916 0.0625354847365714 0.0721606700638778 0.0661956891690865 0.0642680453645834 0.0658945333102812 0.063057465486583 0.0633385455107306 0.064038749890974 0.0631152092875986 0.0636285420994121 0.0641167944132604 0.0653610481436474 0.0667714646655866 0.063575772373081 0.0646693251679016 3 3 - 2823434 2823946 2823720.636 2823096 2825120 - gene protein_coding_gene FALSE TRUE AT3G09200.1|AT3G09200.2 60S acidic ribosomal protein P0 (RPP0B) Identical to 60S acidic ribosomal protein P0-2 (RPP0B) [Arabidopsis Thaliana] (GB:Q42112;GB:Q8LCI7;GB:Q9SR42;GB:Q9SS70); similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1); similar to Ribosomal protein L10; Ribosomal protein 60S [Medicago truncatula] (GB:ABE83633.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.639152219315618 -7.34628264741872 6.24227114450687e-05 0.415048608398262 8.61680558469978 21.6369380908368 -0.639152219315618 0.079254296549462
AT2G21180_at 5.54065825482221 5.86407245247708 5.96664393761757 6.06182294879762 7.14199484005638 6.81974120414557 5.63740037092025 6.01408965683463 5.05838755691351 5.38132670251454 5.79674563016748 6.08513078375659 6.55078801938877 6.41392759209748 5.72371260002352 6.35927043897705 6.13556477267883 6.10669855713725 5.86089254407701 0.224816160530777 0.225784140383461 0.219297183054555 0.221532407158665 0.22754930998277 0.231932680813988 0.219669598011968 0.218858468047812 0.228244482331397 0.219787077047483 0.223272651690227 0.216810114066649 0.218623405769268 0.217789322260428 0.216810114066649 0.219175745800397 0.223855212835029 0.230037905733502 0.219301588907266 2 2 - 9082068 9082385 9082210.818 9081741 9082461 - gene protein_coding_gene FALSE TRUE AT2G21180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19875.1); similar to Os06g0206900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057097.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81380.1); similar to Os03g0249700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049562.1) 0.72321987350038 7.34164431617326 6.27141088447306e-05 0.416923395599769 8.61336045969862 11.9208106584323 0.72321987350038 0.103745947850529
AT3G50700_at 8.27828868384884 8.78443739793353 8.050423081165 8.22125170972453 9.34790495711884 8.2656936780962 6.4328636672959 6.48599354843816 5.4855898084069 6.09917222095856 7.54430410408059 7.89603618350161 7.69426869806626 7.23804903637414 7.01370193993948 6.63291172975194 6.94182681417015 7.14829441611949 6.1200253036836 0.229971503200959 0.231149907170643 0.229787171349205 0.228405176371781 0.233322959755151 0.2484889041398 0.229566395906319 0.231379076156754 0.266366259464679 0.245374129690928 0.236563875146469 0.233681539392603 0.231296341444474 0.245265753763778 0.242538794288252 0.234980392688255 0.249220962418914 0.250100094605037 0.235794017497283 3 3 + 18853261 18853731 18853446.364 18851394 18853931 + gene protein_coding_gene FALSE TRUE AT3G50700.1 ATIDD2 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 2); nucleic acid binding / transcription factor/ zinc ion binding zinc finger protein, similar to maize Indeterminate1 (ID1) similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G66730.1); similar to BAC19.12 [Lycopersicon esculentum] (GB:AAG01127.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 1.16900043485724 7.33609984420907 6.30644035714512e-05 0.419189090539436 8.60923858357477 14.5659920369194 1.16900043485724 0.209057839664796
AT3G55080_at 5.74060134656166 5.60824826826049 4.74228597196227 4.78626018344928 5.35721639163129 5.12508067935667 5.45220202030157 5.37935362527503 5.72359511567715 6.04606352610265 5.19109624874386 5.73374009737839 5.32383555995913 5.47832984424028 5.81308585149051 5.10791456827624 4.99524623188616 5.12317895430257 5.96200782595467 0.180622336190609 0.166193568504277 0.17365606440944 0.167621004702329 0.179107168717864 0.192265416483232 0.178079196684013 0.170255858959835 0.188102785313277 0.169564605956889 0.171105814571346 0.166294291856771 0.167639058244514 0.168627827587072 0.175843894476735 0.169531861390225 0.171071142108108 0.169415302916819 0.171094013156920 3 3|0 -|/ 20422460 20423603 20422943.8 20422380 20426911 - gene protein_coding_gene FALSE TRUE AT3G55080.1|AT3G55080.2 SET domain-containing protein similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to Nuclear protein SET [Medicago truncatula] (GB:ABE91361.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.553571289104998 -7.33228161982134 6.33068900748085e-05 0.420737591437177 8.60639768212796 10.9020855152395 -0.553571289104998 0.0485309416201626
AT2G31200_at 8.92532468496649 9.3857718937799 10.0547310855963 10.1323159570453 9.84878002066134 9.29105064425893 9.617456493436 9.57144920783364 7.53422938577828 8.50511610469595 9.33302373952463 9.37140155798545 8.94240096704159 9.10546556271474 9.42827044719626 9.52661221669483 8.88158772462119 9.23329720374661 8.16460463227794 0.144158624605796 0.135396262748752 0.146162811660977 0.140467126476854 0.140665383554953 0.144674005630530 0.142032744351399 0.13712265721161 0.183743877987588 0.136768651624238 0.135396262748752 0.138115817056728 0.141117166011000 0.150841412373090 0.137356023472268 0.135396262748752 0.157215070286883 0.142210585782263 0.148353341637745 2 0|2 /|+ 13301557 13301968 13301758.8 13301063 13302487 + gene protein_coding_gene FALSE TRUE AT2G31200.1 ADF6 (ACTIN DEPOLYMERIZING FACTOR 6); actin binding Encodes actin depolymerizing factor 6 (ADF6). Identical to Actin-depolymerizing factor 6 (ADF-6) (AtADF6) (ADF6) [Arabidopsis Thaliana] (GB:Q9ZSK2;GB:Q93VZ4;GB:Q9SJX6); similar to ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) [Arabidopsis thaliana] (TAIR:AT3G46010.2); similar to actin depolymerizing factor [Populus x canescens] (GB:AAD23407.1); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.808246455038195 7.33120841749383 6.33752316414445e-05 0.421128414257399 8.60559883368966 18.2512303992929 0.808246455038195 0.126129401745787
AT1G72370_at 11.0138702863951 11.1320229041861 10.5311528475340 10.5560173297677 10.5726056828467 10.452845364618 11.2846032179451 11.441219376567 10.8581308250660 10.7289053854056 10.2411725116421 10.6076835830613 10.2249023096278 10.2310148001259 10.9674599369961 10.0027718691223 10.1800358564686 10.2907152063020 10.5828149084451 0.0651854466500282 0.0655308078640386 0.0692711827469791 0.0687245777750876 0.0670339308460742 0.0691402524265253 0.0669730056556852 0.0671722987429025 0.0703092987023384 0.0660303581752398 0.0657546256127354 0.0654686102824614 0.0651854466500282 0.0656168624893458 0.0651854466500282 0.0651854466500282 0.0705137778548795 0.0668952182085572 0.0655119396597401 1 1|0 -|/ 27246992 27247614 27247291.8 27246605 27248593 - gene protein_coding_gene FALSE TRUE AT1G72370.1|AT1G72370.2 P40 (40S ribosomal protein SA); structural constituent of ribosome acidic protein associated to 40S ribosomal subunit of ribosomes. Involved in polysome formation during active protein synthesis. Expressed in actively growing tissue. Identical to 40S ribosomal protein Sa-1 (p40) (Laminin receptor homolog) (RPSaA) [Arabidopsis Thaliana] (GB:Q08682;GB:Q93V81); similar to RPSAB (40S ribosomal protein SA B), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04770.2); similar to 40S ribosomal protein SA (p40) (Laminin receptor-like protein) (GB:Q9ZSR8); contains InterPro domain Ribosomal protein S2, eukaryotic and archaeal form; (InterPro:IPR005707); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) -0.534918918609533 -7.31970908557458 6.41126382918315e-05 0.425964368810928 8.59702966134687 21.4062937339694 -0.534918918609533 0.0400087406827005
AT3G58570_at 6.97343722491201 6.201843205562 6.14766853213998 6.34231621433312 6.56800024363414 6.17128850103269 3.8901363946955 4.23028243768837 3.71923804581566 3.88305948418517 4.85557936975636 4.62422995342659 4.44258413335126 4.85894477781673 4.71141499930105 4.53104178832163 5.31443903699672 4.74358074724771 3.82349262909753 0.292107908492929 0.266616160524703 0.255097970473608 0.252875894111288 0.263759093479277 0.258181724308236 0.249789494282225 0.248299626457468 0.262223513277597 0.261972079220668 0.251575908474655 0.248016745564244 0.248949353035134 0.247375707951683 0.250255597536105 0.254925791207484 0.247375707951683 0.247375707951683 0.255866605408657 3 3 + 21670742 21671242 21670993.727 21667481 21671509 + gene protein_coding_gene FALSE TRUE AT3G58570.1 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 52 (EC 3.6.1.-) (RH52) [Arabidopsis Thaliana] (GB:Q9M2F9); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G58510.3); similar to Os07g0202100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059135.1); similar to Os03g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051626.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE89166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.967511844074158 7.31277477915688 6.45618782340076e-05 0.428884557108513 8.59185385496353 10.1000333794881 0.967511844074158 0.164749911196366
AT2G35650_at 5.32539581979097 5.98251570986995 4.03245640611241 4.03357320284803 4.4713076594238 4.06360129858711 5.93030048567796 5.84456794354019 6.6901795045767 6.12574992057696 7.26418640611449 7.42223514542687 5.94597961291282 6.60067944637156 6.3503489156326 5.93976651854969 4.95176945832277 6.07124975750806 6.32090201632035 0.260628563754399 0.253926153576074 0.261893025045154 0.262915146715653 0.262064806080906 0.263878047388983 0.25511132355339 0.251810232895750 0.263592434666105 0.252708099858585 0.25287395693421 0.257693187143074 0.256715064136609 0.265448997758206 0.262356915433233 0.251810232895750 0.267457388625461 0.254908065425270 0.251810232895750 2 2 + 14994678 14995231 14994961.909 14992567 14995436 + gene protein_coding_gene FALSE TRUE AT2G35650.1 ATCSLA07 (CELLULOSE SYNTHASE LIKE); transferase, transferring glycosyl groups a member of Glycosyltransferase- Family 2 and encodes a beta-mannan synthase based on in vitro enzyme assays from heterologously expressed protein. Mutants exhibit defects in pollen tube growth and embryo development. The defective embryonic development was associated with reduced proliferation and failed cellularization of the endosperm. similar to ATCSLA15 (Cellulose synthase-like A15), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G13410.1); similar to ATCSLA09 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G03760.1); similar to ATCSLA03 (Cellulose synthase-like A3), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G23480.2); similar to cellulose synthase-like A1 [Physcomitrella patens] (GB:ABD79099.1); similar to glycosyltransferase 1 [Ipomoea trifida] (GB:AAQ62570.1); similar to cellulose synthase-like protein OsCslA9 [Oryza sativa] (GB:AAL25128.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) -0.840563627098372 -7.31274841006487 6.45635931706732e-05 0.428884557108513 8.591834160789 11.3090751764461 -0.840563627098372 0.13464746543574
AT1G64780_at 3.90920088858116 4.08415195754578 3.76290632196252 4.25967230366706 2.8751633981389 3.37355733446618 8.36424786715664 9.73744255754647 4.79736551223846 6.22366197649778 4.53631770630608 5.53088832645963 6.21855044365905 5.40260285182082 4.69931000072797 7.82989791469571 6.91990619266757 5.12494800327572 6.11845837318453 0.223707875237095 0.223707875237095 0.236557733833726 0.228837387156863 0.229807279794538 0.227138816740094 0.240236115203377 0.236622867095434 0.233720987380735 0.228168251815148 0.225144221758928 0.223707875237095 0.224239314571172 0.228085377133227 0.223736706620210 0.235060224341123 0.233821292601943 0.229918579238899 0.229892832887967 1 1 - 24064712 24065216 24065012.909 24064433 24066293 - gene protein_coding_gene FALSE TRUE AT1G64780.1 ATAMT1;2 (AMMONIUM TRANSPORTER 1;2); ammonium transporter encodes an ammonium transporter gene Identical to Ammonium transporter 1 member 2 (AtAMT1;2) (AMT1.2) [Arabidopsis Thaliana] (GB:Q9ZPJ8;GB:Q9SQH8); similar to ATAMT1,3 (ammonium transporter 1,3), ammonium transporter [Arabidopsis thaliana] (TAIR:AT3G24300.1); similar to AMT1,1 (AMMONIUM TRANSPORT 1), ammonium transporter [Arabidopsis thaliana] (TAIR:AT4G13510.1); similar to ammonium transporter, putative [Arabidopsis thaliana] (TAIR:AT4G28700.1); similar to Ammonium transporter 1 member 2 (LeAMT1;2) (GB:O04161); similar to Ammonium transporter [Lotus japonicus] (GB:AAM95453.1); similar to ammonium transporter [Populus tremula x Populus tremuloides] (GB:CAG26715.1); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905) -1.44314762608543 -7.31040566718482 6.47161561548704e-05 0.429779993024494 8.59008407906369 10.7937751455957 -1.44314762608543 0.268733583034541
AT3G47550_at 8.90462216157753 8.90536438234277 8.92778443784494 8.93159676384549 9.64739826323448 9.24481850382981 8.18333421214314 7.98669936703016 7.78521177808293 7.51447176925432 8.19049072281761 8.06286293277157 8.28863975451277 8.34005851654544 8.02920491783257 7.86072964089899 7.92873617004503 8.16611754321928 7.32081309204016 0.148227267205997 0.151934234797454 0.148028314708780 0.154734256283481 0.152126678529811 0.157245876297938 0.149339225262396 0.150061338604989 0.149685476567309 0.16057442661044 0.144791774664956 0.145522058832530 0.145302937146089 0.146589028748925 0.146734448539565 0.146548631867274 0.15117054691566 0.152384930149543 0.15786981047677 3 3|0 +|/ 17535180 17536201 17535798.9 17534443 17536525 + gene protein_coding_gene FALSE TRUE AT3G47550.1|AT3G47550.2|AT3G47550.3|AT3G47550.6 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G62460.1); similar to Os11g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068224.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52455.1); similar to Os08g0436200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061887.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G62460.1); similar to Zinc finger protein, putative [Solanum demissum] (GB:ABI34360.1); similar to Os11g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068224.1); similar to Os08g0436200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061887.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.630541969893275 7.30947485056251 6.47768826705707e-05 0.43011850093259 8.58938853651712 16.6657125471258 0.630541969893275 0.0775375297526576
AT2G46225_at 6.93487027990813 6.40998680380564 5.36337586806365 5.17485838461248 6.4459859535154 6.41507576689767 7.4254123366316 7.1840621406435 6.62847489727009 7.37620650801156 6.9433792148455 7.20734137279624 6.98735704645809 6.38132113910375 7.26729904623452 6.83088777870136 6.03608053703887 6.72324370450346 7.32315166234533 0.218176248935443 0.214000316614932 0.224768422913734 0.212735617572446 0.222481685946442 0.222388037541218 0.215118882114673 0.218306627732146 0.226637959097557 0.223000333913960 0.217309049086682 0.214728809096307 0.219592525015529 0.232228912549306 0.224610241448046 0.212735617572446 0.221658416611861 0.228976883067986 0.217632697693736 2 0|2 /|+ 18990167 18991050 18990649.25 18988991 18991365 + gene protein_coding_gene FALSE TRUE AT2G46225.1 ABI1L1 (ABI-1-LIKE 1) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Identical to Protein ABIL1 (Abl interactor-like protein 1) (AtABIL1) (ABIL1) [Arabidopsis Thaliana] (GB:Q8S8M5;GB:Q8GWF6); similar to ABIL2 (ABL INTERACTOR-LIKE PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT3G49290.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90359.1); contains domain Subtilisin-like (SSF52743) -0.725461428111843 -7.30638050604254 6.49792099399987e-05 0.431396974791652 8.58707549721644 13.3723991513444 -0.725461428111843 0.105300152720945
AT1G12710_at 7.32965575055474 7.50759638349252 6.81113849820663 6.69227292586271 8.78121745670528 7.69279175210108 5.47135544141299 5.00597643236883 3.36907607510315 3.45714116406216 5.14609879176507 4.58478064023550 4.83348197499586 5.10570294648137 3.64802063520531 4.08519086465856 4.98213964744287 4.10832123659763 3.39869634641352 0.269877333136948 0.273287992924969 0.271422773484039 0.267461958532563 0.264405635740434 0.264247824570566 0.265666108670150 0.275678832222741 0.275747749461501 0.271755151434260 0.268892220317917 0.268721405849057 0.269837122240207 0.276037847900099 0.264247824570566 0.264247824570566 0.265841552448805 0.266720430945401 0.268274461567681 1 1|0 -|/ 4326991 4328011 4327331.778 4326737 4328479 - gene protein_coding_gene FALSE TRUE AT1G12710.1 ATPP2-A12 (Phloem protein 2-A12) similar to ATPP2-A11 (Phloem protein 2-A11) [Arabidopsis thaliana] (TAIR:AT1G63090.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE90560.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 1.15956085995408 7.30219711277667 6.52538547030657e-05 0.43315508751895 8.5839463724585 10.8965113904376 1.15956085995408 0.208172606797868
AT2G27810_at 5.59029919790488 5.76024360974175 5.20196654765206 4.87731952482727 6.07313254220749 6.07932970388493 5.90902189199277 5.91000776808673 4.86460785971503 5.76310860183668 6.79881775992813 7.73752120642273 6.85617044821291 6.7888792938804 6.66330044857871 6.6247405738929 6.75140528803778 6.26629660285704 5.57851972559019 0.238927754192751 0.237641862771788 0.242892992225874 0.2430941261303 0.241031297071626 0.258130536831265 0.246533597824554 0.24070800482853 0.243482010052056 0.243190009199713 0.245054602014327 0.250166883331861 0.244488616564659 0.257282641772639 0.244262209140557 0.237641862771788 0.241748238598902 0.240561409611405 0.238876954460755 2 2 + 11862238 11863002 11862672 11859157 11863368 + gene protein_coding_gene FALSE TRUE AT2G27810.1|AT2G27810.2|AT2G27810.3 xanthine/uracil permease family protein Identical to Nucleobase-ascorbate transporter 12 (AtNAT12) (NAT12) [Arabidopsis Thaliana] (GB:Q3E7D0;GB:Q8LPL9;GB:Q9ZUY2); similar to permease [Arabidopsis thaliana] (TAIR:AT4G38050.1); similar to Os01g0857500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044854.1); similar to putative permease [Gossypium hirsutum] (GB:AAT64019.1); similar to Os07g0490500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059675.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043)|Identical to Nucleobase-ascorbate transporter 12 (AtNAT12) (NAT12) [Arabidopsis Thaliana] (GB:Q3E7D0;GB:Q8LPL9;GB:Q9ZUY2); similar to permease [Arabidopsis thaliana] (TAIR:AT4G38050.1); similar to putative permease [Gossypium hirsutum] (GB:AAT64019.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043)|Identical to Nucleobase-ascorbate transporter 12 (AtNAT12) (NAT12) [Arabidopsis Thaliana] (GB:Q3E7D0;GB:Q8LPL9;GB:Q9ZUY2); similar to permease [Arabidopsis thaliana] (TAIR:AT4G38050.1); similar to Permease I, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99620.1); similar to Os03g0823800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051745.1); contains InterPro domain Xanthine/uracil/vitamin C permease; (InterPro:IPR006043) 0.587178343195216 7.28646289298802 6.62983449318708e-05 0.440022115312826 8.57215660103547 11.7816501891740 0.587178343195216 0.0634230986741048
AT2G44770_at 6.85953757127373 7.15573357872007 6.89790350018765 7.31998574890136 7.9588473383837 7.7593801682341 7.69200229723972 7.56911607837384 6.24556168535719 5.99709129580442 7.47582480361637 7.71212748514537 7.39238028275129 7.47109390641064 7.54578996638682 7.30040467664625 7.30302367931058 7.67965177147627 6.52519796921993 0.159799513200932 0.156282723934381 0.166420785515336 0.165720330588801 0.157643980227908 0.157899708395082 0.161363754725564 0.164500837743707 0.187670971291418 0.167291771294158 0.162699611397167 0.156282723934381 0.157797847674240 0.165285968891297 0.160256482896823 0.156282723934381 0.173048172273881 0.158024600450388 0.162089324511217 2 2|0 +|/ 18465522 18466918 18466142.2 18464397 18467458 + gene protein_coding_gene FALSE TRUE AT2G44770.1 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT3G60260.4); similar to Os04g0545100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053465.1); similar to Os02g0652300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047599.1); similar to phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93689.2); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) 0.697009281099483 7.2853759396689 6.63711783632934e-05 0.440439139618815 8.57134092495747 14.2720569792952 0.697009281099483 0.098012770931289
AT3G46880_at 5.94984558800849 6.13121634653306 5.00071894136021 5.16923255664278 6.03206101089747 6.18809558468761 6.41182077676405 7.00598662850906 4.7036455600884 5.39072355661041 4.65855358555474 3.31238349949433 4.96986714889743 4.51719025612674 3.7257929600658 6.21327731965752 5.81491061887438 4.17289976494712 6.14301774413094 0.218971754775950 0.213630713942935 0.209692047123216 0.214975685872863 0.226743122273301 0.236279091254339 0.209263129184153 0.211489527744663 0.219089915852967 0.209693759085331 0.206562205244140 0.217955808183469 0.206562205244140 0.213500965557601 0.209509035295956 0.217250971877960 0.215505437068993 0.23785584524413 0.212958375517291 3 3|0 +|/ 17276290 17277187 17276809.875 17276278 17277251 + gene protein_coding_gene FALSE TRUE AT3G46880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59080.1) -0.758271602148818 -7.28478081731795 6.64110930725078e-05 0.440637602536089 8.5708942642267 11.0289080197481 -0.758271602148818 0.114618120920931
AT1G10410_at 8.05896917302153 8.32943208055424 8.82845187744475 8.81097213329727 8.7711595685216 8.03969267508016 7.0202937945052 6.91994467505333 6.1841472479366 6.46964768922688 7.09260254149455 6.91418592882924 6.98424761336485 7.1712128433238 6.6157822469783 6.96702521105701 6.79963950609114 6.82462886065689 6.14343051758135 0.200966419001168 0.202859191235219 0.211814945057357 0.220632725691104 0.205972825982504 0.215487723183419 0.214593440092509 0.199974637714729 0.213851363396129 0.203235321151162 0.205664329824573 0.208711376568123 0.199014862677151 0.221657331697267 0.202763304451611 0.205591413723919 0.215437530491245 0.211639098522356 0.210919490474436 1 0|1 /|- 3416894 3417615 3417312.778 3416681 3419640 - gene protein_coding_gene FALSE TRUE AT1G10410.1 similar to CW14 [Arabidopsis thaliana] (TAIR:AT1G59650.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98316.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.842916454264282 7.28157418070486 6.66266174356042e-05 0.442000980067798 8.56848675783985 14.6908182032961 0.842916454264282 0.136106089035879
AT3G62770_at 7.13310155137048 7.49115837368059 7.83301826754213 7.7245199194624 7.90106256183376 7.90410960660734 6.0259277574515 6.81208941474792 6.10576378276392 5.99139991636081 6.10867071439957 6.29813619726104 7.0123465277688 6.8764903405408 6.05280882332558 7.42844257131323 7.31370740072986 7.10934312685525 5.73348018043433 0.216732484675514 0.207552439917816 0.214570598009767 0.209376163987001 0.208507439220551 0.226698980051737 0.220017059184176 0.210771617568316 0.219295551539770 0.210328113023542 0.217491790577045 0.209091457443088 0.211510683993763 0.224297856611946 0.212404734052155 0.207552439917816 0.21368996313269 0.207552439917816 0.21155981536331 3 3 - 23230465 23231736 23231416.545 23229609 23232207 - gene protein_coding_gene FALSE TRUE AT3G62770.1|AT3G62770.2|AT3G62770.3 AtATG18a (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) a) Required for autophagosome formation during nutrient deprivation and senescence. similar to AtATG18d (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) d) [Arabidopsis thaliana] (TAIR:AT3G56440.1); similar to WD40-like [Medicago truncatula] (GB:ABE86644.1); contains InterPro domain WD40-like; (InterPro:IPR011046)|similar to AtATG18d (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) d) [Arabidopsis thaliana] (TAIR:AT3G56440.1); similar to WD40-like [Medicago truncatula] (GB:ABE86644.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.903276783735017 7.28128971891055 6.66457738839765e-05 0.442061418172416 8.56827312113071 13.7123940179007 0.903276783735017 0.150670499502202
AT1G30240_at 6.74577315059773 6.68289456056922 7.03407427689739 6.58891661454336 7.41061100845085 6.31970364362301 7.7981822839818 7.23005571589547 5.89277476681745 7.450309429594 4.45601990564904 4.17496541058565 5.33731984445972 4.15638527051044 3.6976038383808 4.31861660414218 5.64568679519048 4.53547420160664 6.89331853095493 0.275349339466381 0.272238732173567 0.277093175435253 0.265539711116547 0.283663142204445 0.297823907475357 0.276072592133788 0.277165210028693 0.277463167970204 0.265539711116547 0.277270561146984 0.276047083479983 0.273392412682121 0.275608032135353 0.282801405621876 0.265539711116547 0.292605347443948 0.275623982362202 0.275620062788405 1 1 - 10641257 10641792 10641534.818 10641083 10645919 - gene protein_coding_gene FALSE TRUE AT1G30240.1|AT1G30240.2 binding similar to Proline-, glutamic acid- and leucine-rich protein 1 (Modulator of nongenomic activity of estrogen receptor) (GB:Q9DBD5); similar to proline-, glutamic acid-, leucine-rich protein 1 [Mus musculus] (GB:NP_083507.2); similar to Os05g0295900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055114.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -1.24055431692779 -7.28008969295917 6.67266538457953e-05 0.442531168305314 8.56737175828058 12.6191396866221 -1.24055431692779 0.226626677580049
AT4G36940_at 6.77629793823903 6.67788790262157 6.97525620663565 6.97905837919234 7.16141708449155 6.92272961130435 7.40084364026744 6.92874876878439 5.21828842509717 5.13951554438542 6.13537263669843 6.7519918118219 6.19956889779254 6.44157778036875 6.11520183337342 7.1556759479344 6.88582852578577 6.90275169383745 5.47814612512838 0.215635826003694 0.212079896781581 0.22571160277307 0.215347973932014 0.212079896781581 0.215349286112540 0.212156320218259 0.221175213951115 0.238142395726043 0.236207976485089 0.223029108717097 0.212079896781581 0.223746710350502 0.230741308802367 0.214075901164078 0.212084639045697 0.225816493926811 0.212079896781581 0.240622326017571 4 4 + 17418599 17419454 17419014.818 17416852 17420248 + gene protein_coding_gene FALSE TRUE AT4G36940.1 nicotinate phosphoribosyltransferase similar to nicotinate phosphoribosyltransferase family protein / NAPRTase family protein [Arabidopsis thaliana] (TAIR:AT2G23420.1); similar to B0222C05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66393.1); similar to nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] (GB:AAP69614.1); similar to Nicotinate phosphoribosyltransferase related [Medicago truncatula] (GB:ABE93547.1); contains InterPro domain Nicotinate phosphoribosyltransferase related; (InterPro:IPR006405); contains InterPro domain Nicotinate phosphoribosyltransferase and related; (InterPro:IPR007229) 0.679258433671228 7.27915016633302 6.6790052079177e-05 0.442884835337023 8.56666592784938 12.9038530276863 0.679258433671228 0.0931195341709712
AT1G18810_at 9.44142733089736 9.44239454681172 8.76320758205206 8.87568937239197 8.96866438694334 9.17117345883046 9.92274867608864 9.90221987582336 9.14247908100281 9.79338148615387 9.00158932749433 9.15291799267248 9.70165503188597 9.18461674092226 8.70486059409552 9.53586142876932 9.47275875320828 8.98803032075772 9.71325505340546 0.0861639575850959 0.082442827038054 0.0865213896092177 0.0879079790927451 0.0835489373387632 0.0909092417022654 0.088213173202056 0.0879880172500184 0.0943212136073377 0.0875491193530934 0.0925237656122646 0.0852416950900508 0.0872097162994652 0.0843825886642725 0.0911156844437662 0.084625612337552 0.090927697559174 0.0876882821829559 0.092708855933322 1 1 - 6485747 6486267 6485979.727 6485587 6487021 - gene protein_coding_gene FALSE TRUE AT1G18810.1 phytochrome kinase substrate-related similar to PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) [Arabidopsis thaliana] (TAIR:AT2G02950.1); similar to phytochrome kinase substrate 1-like [Solanum tuberosum] (GB:AAU89731.1) -0.532216420239561 -7.27656151582772 6.69650752615593e-05 0.443978448984138 8.56472056608825 18.6946863940198 -0.532216420239561 0.0402457008498703
AT1G07610_at 11.0292388435122 11.1876579233391 12.4291583379082 12.4549424945180 12.2766618409953 12.1407155664964 12.4777556668734 12.3941996752928 11.3366791232858 12.3210645806121 12.4357420173094 11.5882351259036 12.1936694950115 12.3194310485269 11.5238747510659 12.2918713341184 13.0161008799198 12.5815063706943 11.5539536913593 0.082941706794094 0.078619484404437 0.0774748460973446 0.0787074413374422 0.0781125029860941 0.0814291873401815 0.0791773562549426 0.0798698455808678 0.0826576669295171 0.0774748460973446 0.0797033434302855 0.0795675136734474 0.0783393277909789 0.0802911620419231 0.0795696721510454 0.0774748460973446 0.0806307637908678 0.0774748460973446 0.0774748460973446 1 0|1 /|+ 2341797 2341802 2341799.5 2341539 2342120 + gene protein_coding_gene FALSE TRUE AT1G07610.1 MT1C (metallothionein 1C) one of the five metallothioneins (MTs) genes identified in Arabidopsis. MTs are cysteine-rich proteins required for heavy metal tolerance. Identical to Metallothionein-like protein 1C (MT-1C) (MT1C) [Arabidopsis Thaliana] (GB:Q38804); similar to MT1A (METALLOTHIONEIN 1A) [Arabidopsis thaliana] (TAIR:AT1G07600.1); similar to metallothionein-like protein 1 [Brassica oleracea] (GB:AAF70555.1); similar to Metallothionein-like protein LSC54 (GB:P43402); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347); contains InterPro domain Mollusc metallothionein, family 2; (InterPro:IPR001008) 0.52986397272905 7.27217610493634 6.72627357418493e-05 0.445884675232719 8.5614229095548 24.0393094650691 0.52986397272905 0.0391671378498077
AT3G12320_at 10.0628417388629 10.2690892275955 10.3037355785745 10.3539192860541 10.5944024001044 10.3802758834970 11.4616475533558 11.5334561134162 11.1280678985171 11.2497310227929 10.6378832555497 10.4884099535289 10.6786550655698 10.4435029957830 10.0179166191339 11.0458277906993 10.6291172391340 10.2526367448687 11.2860583576247 0.0925430414273347 0.0888002093217087 0.0978059527671788 0.0922881867424908 0.0894385236632487 0.093373368068681 0.0917039318908344 0.0888003864833465 0.106333718909992 0.0877852278019057 0.0908950538946802 0.0883866995635356 0.0905474871135287 0.088526390739324 0.093649601319681 0.0881041962054762 0.0993182554337224 0.0968032941724795 0.088056968520003 3 3 + 3924259 3925232 3924774.182 3923742 3925472 + gene protein_coding_gene FALSE TRUE AT3G12320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06980.1); similar to ACI112 [Lycopersicon esculentum] (GB:AAY97870.1) -0.56035871143082 -7.2655447710779 6.77156132430958e-05 0.448819084575239 8.55643154082086 21.4926857065217 -0.56035871143082 0.0536366356220775
AT2G22570_at 5.59561679952453 5.75636655601919 6.3221051423439 6.449001104881 5.96043014293878 5.79790382486312 4.34430794571714 4.20264224724579 3.53454974416241 4.27972368067189 3.80476031747532 3.80485765864463 3.47292154175664 4.1664098045793 3.72334359460765 3.74346036785484 4.51317255406907 4.18050338837140 4.10795224808043 0.254467716452125 0.252637014645181 0.250394822675907 0.254867477816357 0.253117145532006 0.257211733471404 0.255366286316419 0.261565263808072 0.26853734611261 0.259660709293002 0.253748913605234 0.253756438421202 0.261664072531131 0.256302324420662 0.254317326318428 0.250394822675907 0.260278437837627 0.250394822675907 0.250394822675907 2 0|2 /|- 9596883 9597460 9597188.444 9596515 9597959 - gene protein_coding_gene FALSE TRUE AT2G22570.1|AT2G22570.2 isochorismatase hydrolase family protein similar to hypothetical protein [Plantago major] (GB:CAH59421.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868)|similar to unknown [Lycopersicon esculentum] (GB:AAK84475.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868) 0.554865047872491 7.26109218122437 6.80215826907545e-05 0.45077902849163 8.5530768102822 9.50367365930406 0.554865047872491 0.0514607203230198
AT1G21010_at 7.5222809608131 7.96300633793005 6.84883176056108 7.42691496339466 8.3991251809777 8.43861588861631 7.02467437672591 7.60781571778761 6.24799030067235 5.69248941874955 7.5203386874044 7.59718858211677 7.96039984175774 8.08485986432717 6.68915482797773 7.0930759485047 8.08989263389826 6.76091257420145 5.5519853782768 0.192230861526601 0.187773523592027 0.189748578247046 0.19209741370011 0.190949916426063 0.187773523592027 0.200258782559714 0.1962776328429 0.211065750078496 0.209304946988341 0.189623204143994 0.187929078462817 0.200144413596483 0.187773523592027 0.207806846551973 0.188511366399221 0.192196272873373 0.190536343978946 0.225130709143618 1 1 + 7346357 7346830 7346562.818 7346145 7346957 + gene protein_coding_gene FALSE TRUE AT1G21010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76600.1); similar to TMV response-related gene product [Nicotiana tabacum] (GB:BAB41200.1) 0.94629188543195 7.26053984782721 6.8059643637702e-05 0.450963198743413 8.55266047933557 14.306557932979 0.94629188543195 0.161417649052141
AT3G60180_at 8.28512941463173 8.02733730129608 9.01068997844138 9.12974984270124 9.73591101456904 9.34027536731198 8.15356095409327 7.15765973882082 7.19924802452204 5.74536357132971 7.26883451684803 7.03781157605847 7.06256911983331 7.0480449174969 7.19917138000971 7.71241836968107 8.32875104698544 7.57809194274347 6.98660635562244 0.327086442381612 0.327086442381612 0.328816453789349 0.327086442381612 0.336165239099922 0.344274731192921 0.327086442381612 0.335138521541511 0.348050077410497 0.370846820120137 0.337959115499293 0.327086442381612 0.338624865617228 0.334116610716395 0.327086442381612 0.327086442381612 0.327086442381612 0.327086442381612 0.342430079161315 3 3|0 -|/ 22253940 22254840 22254481.333 22253479 22255030 - gene protein_coding_gene FALSE TRUE AT3G60180.1|AT3G60180.2 uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative similar to uridylate kinase [Arabidopsis thaliana] (TAIR:AT5G26667.3); similar to Os02g0778400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048295.1); similar to UMP/CMP kinase b [Oryza sativa] (GB:AAF23372.1); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850); contains InterPro domain UMP-CMP kinase; (InterPro:IPR006266) 1.07947849504721 7.26034115243819 6.80733413542024e-05 0.450985886471591 8.55251069925574 15.6291396644157 1.07947849504721 0.191847218678115
AT1G33590_at 11.0881412214287 11.2673473055014 11.2805518566415 11.3490170832764 11.7113451365003 11.6315979087437 10.9611412947273 10.7948636500775 10.9471433199708 10.9684152105450 11.6229739562453 11.8503737081914 11.3602751135477 11.6288129614262 11.3192880837901 11.6694217026094 11.4083969616593 11.5011706912752 10.8596223851823 0.0831658771071478 0.0830868226559407 0.0845700204622179 0.0821129289177662 0.0824432816006104 0.0851880676243788 0.0840652827196355 0.0834554456029512 0.097086805874841 0.0873630479180544 0.0852723572112072 0.0826336856871693 0.0821129289177662 0.0821129289177662 0.087349714823379 0.0821129289177662 0.0831714588306263 0.0851757840750591 0.087075215666153 1 1 + 12178606 12179151 12178841.091 12177757 12179393 + gene protein_coding_gene FALSE TRUE AT1G33590.1 disease resistance protein-related / LRR protein-related similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33600.1); similar to disease resistance protein-related / LRR protein-related [Arabidopsis thaliana] (TAIR:AT2G26380.1); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G33610.1); similar to Leucine-rich repeat; Leucine-rich repeat, cysteine-containing type [Medicago truncatula] (GB:ABE89631.1); similar to H0402C08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86230.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.542641735233564 7.25901995138887 6.8164500006178e-05 0.451521648040923 8.55151462062412 22.4955754084 0.542641735233564 0.0460501625163325
AT1G21670_at 9.71496581954144 9.96369475547775 9.49051062427094 9.4434004258309 10.1923670444565 10.1430766725083 8.52087221221297 8.63014363252068 7.26240988034648 7.45406312532418 7.7894642452749 8.1163875916454 8.27971287723351 7.98174498325096 7.6554450266843 7.26131755868249 8.34569773636507 8.07079038102441 7.64261250463418 0.17468472040536 0.182706470956957 0.173799428925691 0.184077150315191 0.184232955404483 0.185614516780225 0.181282513228323 0.175645853315797 0.182480128381206 0.185914344198117 0.170059356351207 0.168411247395658 0.179155768575226 0.180622990280711 0.181535917288284 0.176382428990370 0.178002849415116 0.178308389822484 0.178735977231283 1 1 + 7612012 7612461 7612212.545 7610387 7612671 + gene protein_coding_gene FALSE TRUE AT1G21670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21680.1); similar to WD40 domain protein beta Propeller [Solibacter usitatus Ellin6076] (GB:YP_828764.1); similar to Os03g0840200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051846.1); similar to Os07g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060406.1); contains InterPro domain WD40-like Beta Propeller; (InterPro:IPR011659) 0.547230566706818 7.2500170466948 6.87892666141373e-05 0.455591312785431 8.54472095138033 17.2076781750800 0.547230566706818 0.0484723729832068
AT3G24150_at 4.96921485823636 5.19556528444977 3.96984531633815 3.95509596429631 5.22706537187752 5.03592921248058 6.46870886426106 6.02896106469434 4.83208862013143 5.45815314972879 5.27140902152782 5.18993779983726 5.26319657921978 4.98870153630634 4.91904226294322 5.04864062094639 4.57399906908176 5.10268230276113 5.51775561200553 0.219112334327886 0.219264257455064 0.218757167739556 0.235274417219094 0.220856933689985 0.219990087025234 0.227714881308719 0.222944695471322 0.255138227558707 0.220751587163060 0.226955522991757 0.228547550395759 0.218757167739556 0.223648316469393 0.223103134957075 0.220218079192263 0.231132880497781 0.232744699598581 0.221058778662702 3 3 - 8724476 8724855 8724665.545 8724166 8725919 - gene protein_coding_gene FALSE TRUE AT3G24150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32295.1); contains domain no description (G3D.1.10.246.20); contains domain Kix domain of CBP (creb binding protein) (SSF47040) -0.671629931603097 -7.2461113143234 6.90622705843491e-05 0.45733035580956 8.54177028192741 10.2633150469292 -0.671629931603097 0.0917945651458674
AT1G77750_at 5.06074293562563 5.24587330427713 4.57118767230792 4.67039368504892 3.47019921861156 4.07765881864871 5.2710093433764 5.22488308387669 4.67006336801038 5.13527788256009 4.55976384861421 5.30121307817188 3.98178368849037 4.23410665337396 4.9066673767745 4.20230693240436 4.51355337573911 4.14095233125148 5.07131137337663 0.214219974943555 0.216012567422217 0.212756732217365 0.215257594289014 0.217965261864548 0.215732434402530 0.209912155855566 0.213883936258555 0.222216403965426 0.21929738282049 0.215806599627147 0.208394201012607 0.209559487297405 0.220713747257106 0.217473800763826 0.208394201012607 0.222201431017736 0.211511470197707 0.208394201012607 1 1 - 29235241 29236350 29235608.182 29235048 29236418 - gene protein_coding_gene FALSE TRUE AT1G77750.1 30S ribosomal protein S13, chloroplast, putative Identical to Small ribosomal subunit protein S13, mitochondrial precursor (mS13) (RPS13) [Arabidopsis Thaliana] (GB:Q9CA19); similar to 30S ribosomal protein S13, chloroplast (CS13) [Arabidopsis thaliana] (TAIR:AT5G14320.1); similar to Small ribosomal subunit protein S13, mitochondrial precursor (GB:Q8LPW2); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.741054057757283 -7.23172606468238 7.00781246539006e-05 0.463987263333476 8.5308850188878 9.41845731701405 -0.741054057757283 0.111516227148765
AT1G47900_at 4.90420385167172 4.85450123801007 3.53524384109513 3.75885519663411 3.48866159139399 3.79555143031100 5.23745063711876 5.14977053609897 4.72753166922176 5.66919845031616 5.63297054405547 6.43882918783271 4.93914399969324 5.41684677474962 5.82725181151133 5.32104290594695 5.15892123368829 5.71146999062487 5.66761653182557 0.235835410009356 0.237519176232177 0.227996665839309 0.236719428590421 0.230371713745434 0.23988517996445 0.243988867145872 0.233308318352711 0.238839378553605 0.231436637531123 0.229520977138137 0.236405132518485 0.228425126007923 0.230886488184209 0.237119477062398 0.231208212397584 0.229311042523115 0.227996665839309 0.232965866754121 1 1 - 17651023 17651846 17651273.636 17650813 17654704 - gene protein_coding_gene FALSE TRUE AT1G47900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19835.1); similar to Putative myosin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL77142.1); similar to Os03g0246500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049544.1); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) -0.595438105987339 -7.23164591375523 7.00838306799685e-05 0.463987263333476 8.53082429127748 9.7958256768587 -0.595438105987339 0.0679868238800012
AT3G56290_at 9.06902057952714 9.28412327486902 9.73945636010869 9.92153090072812 9.30875684480804 9.22372530738916 11.1845759881961 11.1401130279487 10.0749046855099 10.4452835662681 9.52287531914269 9.51478950985564 10.0600684564526 9.6847099325393 9.01756315835685 10.2737824170872 10.3185047468471 9.74699805061647 10.2331880784827 0.148931229697462 0.144614119527863 0.154077433137116 0.156689697152416 0.148001991691355 0.148403399374546 0.147715895583433 0.145827630677027 0.158071297445682 0.158770467039364 0.157128853576177 0.146144143752962 0.144931669939183 0.161850288070890 0.165212387208079 0.144306404962770 0.157566744007305 0.144701517729191 0.147875761730425 3 3 - 20889730 20890490 20890211.364 20889518 20890547 - gene protein_coding_gene FALSE TRUE AT3G56290.1 similar to Os01g0823600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044661.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58546.1) -0.552402429467374 -7.22709573467275 7.04086039848494e-05 0.466034549775718 8.52737536277628 19.8681812315881 -0.552402429467374 0.0515190521080077
AT4G38580_at 8.47796784901585 8.63421197783668 7.37262277770318 7.37629691219473 8.43305481943293 8.46929028066945 6.45629417403514 7.15451357058451 5.96382792051514 6.31492447830797 7.39055242975029 7.44415756028595 7.78101277505132 7.8356909385921 7.651689006798 7.50992770945471 6.8458931204318 7.52753309340597 6.18581239214518 0.194934362404326 0.201031838578252 0.203971469682743 0.204209538663612 0.194086262544014 0.203441068512634 0.188863860591282 0.208369901149595 0.206450781091203 0.200643945316555 0.189012356373640 0.192900654476774 0.203215463004522 0.199892103014702 0.191963466030073 0.194170813042849 0.212387581438171 0.192696958183290 0.204249822186998 4 4 + 18034619 18035637 18035385.182 18034425 18035883 + gene protein_coding_gene FALSE TRUE AT4G38580.1 ATFP6 (FARNESYLATED PROTEIN 6); metal ion binding putative farnesylated protein (At4g38580) mRNA, complete similar to heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related [Arabidopsis thaliana] (TAIR:AT4G35060.1); similar to GMFP7 [Glycine max] (GB:AAD09515.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.787760726765267 7.22189935284739 7.07815314053467e-05 0.468432174840585 8.52343322733286 14.6233625499561 0.787760726765267 0.123978788995424
AT4G17090_at 11.0880585997782 11.1464966188701 10.4577840328068 10.5336655269581 11.0675294625751 10.6343148704595 11.4395408268066 11.420439823352 10.2149648291621 10.8157323055862 9.87329923565493 9.59729756618787 10.2586025740541 9.97726365839523 9.20181369391154 10.5882866901677 10.0787643810166 9.83674812769851 10.6705480947455 0.0969738074394964 0.0961316403509928 0.0957795130858549 0.0965536568853058 0.0956580174735974 0.102746054956226 0.0966373201280699 0.0980299592242433 0.107319692659751 0.0942569607690453 0.0965703389072173 0.0977082441944079 0.0966063172329552 0.0988182001804215 0.102007212830148 0.0951120855524866 0.0985327168509674 0.101620889339495 0.0946285384256115 4 4 - 9605523 9605853 9605657.364 9604978 9607350 - gene protein_coding_gene FALSE TRUE AT4G17090.1 CT-BMY (BETA-AMYLASE 8); beta-amylase Encodes a beta-amylase targeted to the chloroplast. Transgenic BMY8 RNAi lines fail to accumulate maltose during cold shock suggesting that maltose accumulation coincides with BMY8 expression. Apart from maltose, the sugar content of the RNAi lines were similar to wildtype (glucose and sucrose unaffected). similar to BMY7/TR-BAMY (beta-amylase 7), beta-amylase [Arabidopsis thaliana] (TAIR:AT3G23920.1); similar to beta-amylase PCT-BMYI [Solanum tuberosum] (GB:AAK84008.1); similar to Os10g0565200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065418.1); similar to beta-amylase [Glycine max] (GB:CAI39244.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.620441373140329 -7.21689572467697 7.11426842773916e-05 0.4707511418635 8.51963389108005 21.2202743372260 -0.620441373140329 0.0768512233797482
AT3G47080_at 5.67393471529564 5.79876721321633 5.51824840478603 5.51389657630356 5.17487787262755 4.97073716907381 7.09119415143028 6.79144195765952 4.78001224842692 5.97595774666349 4.94731655541821 5.47622038595183 5.30261224795781 5.37973864872876 5.30862212264596 5.55413293520506 5.77351212953444 5.11123695189123 5.71887825866716 0.274905549499218 0.274892239937562 0.28107152967297 0.281697891664324 0.277039942693128 0.286534832064067 0.274575035876077 0.275433706147234 0.273214401629477 0.282665622281018 0.274590409317822 0.272206689946326 0.273448545324811 0.271534997492299 0.277951835104449 0.271109988211074 0.284966489253909 0.272068067925721 0.274492922606287 3 3 - 17349426 17350097 17349752.273 17349091 17351381 - gene protein_coding_gene FALSE TRUE AT3G47080.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G07280.2); similar to binding [Arabidopsis thaliana] (TAIR:AT2G29670.1); similar to Os05g0447700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055695.1); similar to Os01g0855200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044840.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:AAM93690.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.589668295560948 -7.2165454115975 7.1168045227121e-05 0.470847787222632 8.51936776654589 11.2407822984253 -0.589668295560948 0.0663787918302437
AT3G01860_at 8.40671266042155 8.65575156631622 8.15522586248379 8.13893791491626 7.44258896729715 7.63673790650913 7.55574321135839 8.14281015188831 7.98746454008443 8.64806632524105 7.02025710355113 7.65561129514921 7.82018764188138 8.10615483635647 6.89621704651785 8.1196756969131 7.55235039282563 6.87833067917992 9.36657268809691 0.201632342432841 0.203369527682531 0.1941573374233 0.208207048138246 0.193591645989782 0.198431117094563 0.194239721328442 0.206998820848008 0.206489489320521 0.193894627208678 0.198379909985478 0.193126454735412 0.189656387837100 0.189656387837100 0.208484820332338 0.189656387837100 0.212867002560336 0.201949372523463 0.194384218710501 3 3|0 +|/ 303789 304303 304054.6 302652 304569 + gene protein_coding_gene FALSE TRUE AT3G01860.1|AT3G01860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27210.1); similar to Os04g0380200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052596.1); similar to OSJNBb0089B03.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03997.1); similar to Os01g0920100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045217.1) -0.754075749644245 -7.2162424851445 7.11899836525046e-05 0.470921741861318 8.51913762719705 16.1035464989927 -0.754075749644245 0.115393477519729
AT1G09200_at 7.47878844930394 7.90278689692875 7.70155558513844 7.70448984069489 5.77898973827627 5.68725829775474 7.90968855613635 8.22028856327277 8.48247571155193 8.35183555502625 7.89234204711227 8.82237912116103 7.56053063916362 7.91890264221084 8.97329784995554 7.87493305781047 7.06643491079892 7.61996055930591 7.60840010019159 0.191048234764764 0.175045984488918 0.187325791123912 0.191237037211824 0.177955173798299 0.204916468400130 0.178437198430465 0.181623908905304 0.194329837051208 0.175045984488918 0.177694847594335 0.182326753473691 0.181311200235331 0.189485144340299 0.184569219892314 0.179350360135472 0.182260634530524 0.175045984488918 0.180122770136953 1 1 - 2971742 2972096 2971933.727 2971595 2972201 - gene protein_coding_gene FALSE TRUE AT1G09200.1 histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10400.1); similar to Histone H3.2 (GB:P68427); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.670643801547231 -7.21569166737923 7.12298938733787e-05 0.471114518078527 8.5187191281745 15.3548147704531 -0.670643801547231 0.092332458392523
AT1G80640_at 5.5035507261817 6.3105237790462 3.77773025352957 4.23681486525022 5.38872586495528 5.61470092153567 5.78141394102469 6.40614534564723 7.27011528724129 6.9308047335148 6.36599843708433 6.85891996662461 5.55399597669741 5.5675814289689 6.93342042785612 5.80729256793357 5.33342671512285 5.51660904888307 6.61913464211891 0.273463383250279 0.274107798787173 0.285909003767859 0.279250847795006 0.273466705241768 0.271779089241790 0.280414142930820 0.269557476320303 0.269557476320303 0.269557476320303 0.269766811862633 0.269557476320303 0.274310796922518 0.274781133914760 0.272171474008602 0.270919739127304 0.280013224589102 0.269557476320303 0.269867878006673 1 1|0 +|/ 30318245 30319057 30318654.875 30316558 30319267 + gene protein_coding_gene FALSE TRUE AT1G80640.1|AT1G80640.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25220.1); similar to putative protein kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD25150.1); similar to Os05g0319700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055185.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G25220.1); similar to Theoretical protein with similarity to GenBank Accession Number L22302 serine/threonine protein kinase (GB:AAA98917.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -1.09688906073462 -7.20664467905935 7.18889470396058e-05 0.475401606772913 8.5118395842971 11.8435376081987 -1.09688906073462 0.197564334149932
AT2G20740_at 8.75287215599892 8.94472707219447 9.10900932313004 9.01070220654304 9.6608948101966 9.26417695685762 8.24124723382016 8.25069227918979 7.93348531114421 8.05824996819605 8.61064623982527 8.23773054949362 8.74596039852866 8.64606022083262 8.50469206029058 8.50926664748825 8.5895640921974 8.4591844129353 8.0246313217049 0.101236700424281 0.102676339770300 0.103207010745351 0.101936814487141 0.106546500544467 0.110620965165617 0.101111552670475 0.103824216004788 0.111481072106044 0.0998468959274021 0.102267446777194 0.0989220704592912 0.101228268371013 0.102690770998237 0.105129507049099 0.10176291684287 0.103032134258886 0.104242532615647 0.104585608396010 2 2|0 +|/ 8942872 8944314 8943508.15 8942688 8944593 + gene protein_coding_gene FALSE TRUE AT2G20740.1|AT2G20740.2|AT2G20740.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20230.1); similar to Os04g0679900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054283.1); similar to H0801D08.19 [Oryza sativa (indica cultivar-group)] (GB:CAJ86261.1) 0.623121841449116 7.20143533000462 7.22714842679881e-05 0.477859053979937 8.50787326901056 17.1759620604317 0.623121841449116 0.078152310458484
AT3G02150_at 6.30441040483304 6.7925729968529 7.54690425025025 7.63842273922907 7.35567061247528 7.43676782142903 7.03251339533517 6.98137500195992 4.9467205113101 5.15142781621909 5.13268085754865 5.27439191913929 5.77845964865489 5.5890322094946 4.64207856361153 5.74447453210507 6.13674091236419 5.33480634283578 4.49997932299169 0.262550447315220 0.255750518139852 0.262087729294360 0.278118562434522 0.261739105795822 0.268137177364122 0.258726908332737 0.254774851953540 0.293416822729821 0.253290134937512 0.257377970018008 0.260515662786220 0.256652490192465 0.258535343679670 0.262451889319051 0.253290134937512 0.272730817650202 0.262666029380663 0.256508527342930 3 3 + 391804 392309 392033.273 391098 392765 + gene protein_coding_gene FALSE TRUE AT3G02150.1|AT3G02150.2 PTF1 (PLASTID TRANSCRIPTION FACTOR 1); transcription factor a chloroplast trans-acting factor of the psbD light-responsive promoter. similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G60970.1); similar to putative transcription factor [Solanum tuberosum] (GB:CAD91129.1); similar to Os05g0513100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056024.1); similar to Os01g0763200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044333.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.652381989573139 7.19228602425867 7.29487863835102e-05 0.482264426781386 8.50089827127234 12.2961424894920 0.652381989573139 0.087537310355929
AT4G30810_at 8.84946855614925 8.83918291622723 7.90832730084936 8.10456000531409 8.2936640932487 8.07750372892006 8.61985671612545 8.85163259012254 8.21026818641087 8.73331023309056 7.94694417950052 8.29806332896372 8.1695802991208 7.95176862090823 8.07959416206166 7.74449254994329 7.77025929350468 7.98292014818426 8.44316133724464 0.143339359737457 0.136407559301237 0.141977241965731 0.144339404772517 0.134874385881497 0.142754821972784 0.136155479708559 0.136572266780492 0.160200026841634 0.138004871685352 0.138843714967343 0.133646484647427 0.140911241744290 0.145075642256809 0.139998951977581 0.141925379296404 0.157273613439110 0.153222888255345 0.145628878904509 4 4|0 +|/ 15005090 15005982 15005684.4 15003457 15006218 + gene protein_coding_gene FALSE TRUE AT4G30810.1 SCPL29 (serine carboxypeptidase-like 29); serine carboxypeptidase similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to Serine carboxypeptidase II-2 precursor (CP-MII.2) [Contains: Serine carboxypeptidase II-2 chain A; Serine carboxypeptidase II-2 chain B] (GB:P55748); similar to Os06g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057009.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.581657587690846 -7.1806573967722 7.38197440500408e-05 0.48794850817077 8.49201683156942 16.6706241925473 -0.581657587690846 0.0645330163597138
AT1G06190_at 8.01940711806599 8.00641980557798 7.12306458661372 7.28583614647545 7.49899245372568 7.49737660777957 8.20199966755363 8.2518671878586 7.90249730578341 7.80450738633961 7.51681894954639 8.04701318126718 7.27683562407489 7.50932541880149 8.26962322108792 7.49068558185639 7.49331202210218 7.42319905335426 7.91590677182527 0.144033000301489 0.143391357796707 0.149937908427201 0.142401396282376 0.139945760587358 0.146784681964871 0.142638609215349 0.140438302030600 0.147172005093370 0.138795061579462 0.142245728888106 0.139904314767384 0.139287357249477 0.143067537128636 0.150040860696068 0.140546857309209 0.142482398572536 0.140878785824386 0.140317723638509 1 1 - 1892466 1893020 1892832.909 1892272 1894147 - gene protein_coding_gene FALSE TRUE AT1G06190.1|AT1G06190.2 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism similar to ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT2G31150.1); similar to Os03g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049178.1); similar to Putative plasma membrane proton ATPase [Oryza sativa] (GB:AAK92634.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) -0.507279092960104 -7.17828016187345 7.39992008903615e-05 0.489060718684399 8.49019895041634 15.4869481731200 -0.507279092960104 0.0295475985407256
AT3G05200_at 8.18597704313408 8.43489928173303 8.48879513146934 8.65590955403773 8.73397598962426 8.6425866823049 6.7553848772007 6.78607642265537 7.15809768255414 7.00041468986475 7.08075778100497 6.67291848316175 7.41005036973807 7.26449255873293 6.86593714712633 7.50772008618241 7.46123237721604 7.01362085217179 7.26204218706614 0.174522675068712 0.170081893970670 0.172322118491178 0.170630650242847 0.170081893970670 0.186141826382716 0.17516923725964 0.181363778798616 0.177908008507757 0.170081893970670 0.173926596710379 0.171433200305056 0.174420579449577 0.175561251975754 0.173789550438737 0.176470962172668 0.171937432424665 0.185381224458858 0.174567068839078 3 3 + 1477980 1478538 1478263 1476988 1478736 + gene protein_coding_gene FALSE TRUE AT3G05200.1 ATL6 (Arabidopsis T?xicos en Levadura 6); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). Identical to RING-H2 finger protein ATL3B precursor (RING-H2 finger protein ATL6) (ATL3B) [Arabidopsis Thaliana] (GB:Q8RXX9;GB:Q9MA99;GB:Q9XF65); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G27420.1); similar to RING/C3HC4/PHD zinc finger-like protein [Cucumis melo] (GB:AAO45753.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.554569393466687 7.16373245648071 7.51079331041644e-05 0.496313221952318 8.47905757542905 15.2353386528092 0.554569393466687 0.0545008148561308
AT1G29400_at 7.6787593622736 7.82727356961675 7.95973179086911 7.99951728698075 8.6530228798957 7.93709329751017 7.58778129746608 7.40470268554503 7.0900102207397 7.16292024674333 8.27950202639307 8.14528201270622 8.38948977057051 8.4446947726621 7.91731677345225 9.026657611833 8.46306476145254 7.73424988020543 7.34394452963636 0.158307451490952 0.159090235856376 0.167186124164905 0.164174905396536 0.153820871793930 0.160046745604006 0.158271220395406 0.164251452850081 0.173523876786249 0.169725593232004 0.157224908908743 0.156729298642396 0.159008506770516 0.167859601384198 0.174324455215745 0.164852086114153 0.165994111271012 0.162968846206711 0.169645332443982 1 1 - 10290610 10291361 10290993.636 10290026 10294616 - gene protein_coding_gene FALSE TRUE AT1G29400.1|AT1G29400.2 AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5); RNA binding A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML5 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML5 is the transcript with highest frequency of alternative splicing. Expression was detected during embryo development (heart and torpedo stage) and in vegetative and floral apices. similar to AML3 (ARABIDOPSIS MEI2-LIKE), RNA binding [Arabidopsis thaliana] (TAIR:AT4G18120.1); similar to AML1 [Medicago truncatula] (GB:AAT38998.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.806892976937416 7.15899913195487 7.54726142336479e-05 0.498647562241711 8.47542636143038 15.6304805380359 0.806892976937416 0.130620429111161
AT3G22230_at 9.29923150092748 9.55516498905602 8.67593551337753 8.69838588121654 9.22614829765683 8.79637622339101 9.69307001252703 9.45023675179671 9.0544163105855 8.8558524588738 8.43905691375683 8.86143429169615 8.20071994788156 8.10133023425428 8.6780169943419 7.98939312679305 7.68450172490407 7.9015975281627 8.90743594428753 0.189722875593020 0.191317645042544 0.181478723074457 0.181641145246009 0.184587251614395 0.183415227638018 0.191691767322012 0.185915418895564 0.204746803992333 0.183527194411509 0.178719904179276 0.180890564673484 0.192868279706015 0.188145842222753 0.178719904179276 0.182066185416469 0.193291309146318 0.18987063264514 0.181322498085294 3 3 - 7844147 7844508 7844366.455 7843974 7844604 - gene protein_coding_gene FALSE TRUE AT3G22230.1 60S ribosomal protein L27 (RPL27B) Identical to 60S ribosomal protein L27-2 (RPL27B) [Arabidopsis Thaliana] (GB:Q8LCL3;GB:Q9LIE0); similar to 60S ribosomal protein L27 (RPL27C) [Arabidopsis thaliana] (TAIR:AT4G15000.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) -0.678721447012396 -7.15635771728064 7.56769712678785e-05 0.499922072195605 8.47339865208143 17.7599392711467 -0.678721447012396 0.0963027043677511
AT1G47270_at 7.81495947338005 7.90577333071202 6.66490275047297 6.62804712705112 7.96119642904115 7.87242891079595 6.9604403199885 7.42821333273115 7.6925813101676 7.49800404296664 7.03044874368374 6.74534479781665 6.8308332572904 6.79670948303303 6.21117475989447 6.860645106999 6.25474903689513 6.38981770436709 7.81958641206738 0.182348389918023 0.181227901226125 0.181227901226125 0.181227901226125 0.181227901226125 0.190409550742787 0.184191019748916 0.187341705389553 0.186605567819482 0.181227901226125 0.183343349604120 0.182815577949499 0.183069663802627 0.186741643704019 0.181227901226125 0.181227901226125 0.18482654074949 0.183191131967025 0.182536663851532 1 1 + 17330444 17330979 17330717.455 17328996 17331168 + gene protein_coding_gene FALSE TRUE AT1G47270.1 AtTLP6 (TUBBY LIKE PROTEIN 6); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP2 (TUBBY LIKE PROTEIN 2), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G18280.2); similar to tubby-like protein [Cicer arietinum] (GB:CAB88665.1); similar to Os02g0705300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047866.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) -0.6378973518412 -7.15503055698482 7.5779879140773e-05 0.500526101724806 8.47237948570187 14.5595065174289 -0.6378973518412 0.084122503525694
AT1G79280_at 7.57923214731592 7.25921349336963 7.19929304307031 7.16627675220146 6.92923307361399 6.95017305972382 7.32846998791286 7.5280905470863 7.17345660687003 7.29703404655768 6.30851332943715 6.56957796144602 6.45341089440526 6.72535612554541 6.31622995182423 6.50951629829614 6.55708216215298 6.23464476046502 7.31487257795483 0.182959211078104 0.185951467976696 0.189004652336146 0.186288774069594 0.186432461332570 0.199860153035234 0.186060740199993 0.183754878916806 0.188192263750350 0.193854845466171 0.185427328732074 0.188285423723584 0.197336820858818 0.187360871224112 0.192088837176571 0.182959211078104 0.192888651110743 0.182959211078104 0.184311112262693 1 1 - 29824090 29824579 29824295.273 29824069 29837702 - gene protein_coding_gene FALSE TRUE AT1G79280.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to Os02g0741500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048082.1); similar to PREDICTED: similar to translocated promoter re (GB:XP_422300.2); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Tetratricopeptide, MLP1/MLP2-like; (InterPro:IPR012929) -0.582501935058214 -7.15439404748535 7.58292887330039e-05 0.500776622792758 8.47189060589313 14.1030373526571 -0.582501935058214 0.0656214671170519
AT2G33390_at 6.69382178462099 6.93084722454269 7.20120421391746 7.23049509983868 7.67780690164642 7.6704168804228 6.6952178955235 6.38973570461 6.30537727254917 6.47153542763894 7.08895257875089 6.73889347570036 6.87988260850915 6.95556431607893 6.68536325637147 6.9544576562698 6.90794822088414 6.43192339734953 6.49710572600317 0.165756076988924 0.164916695582033 0.170828541630107 0.178313543694400 0.167546829042552 0.176400408221334 0.166269556603243 0.16714174798288 0.181074260441817 0.167864576192910 0.17364266352757 0.171329662414026 0.167305750451083 0.166161186439249 0.175269844951887 0.162397389093521 0.162015795280220 0.174673471386236 0.171446712924205 2 2|0 +|/ 14158793 14159747 14159089.3 14158655 14159820 + gene protein_coding_gene FALSE TRUE AT2G33390.1 unknown protein 0.58663775082045 7.15439022364334 7.58295856692636e-05 0.500776622792758 8.47188766877257 13.6887162118752 0.58663775082045 0.067115988305149
AT3G15210_at 4.839762396166 5.58857334068496 5.30893826128566 5.85063082767355 5.66466612738204 6.16796306524108 3.48091124136032 4.68700620916783 3.75450337426594 3.27179037903350 5.44440910530464 5.44720723884843 5.33222443770257 5.14758264905162 5.05739658792383 5.464015366618 5.15531321086138 4.65078607771992 3.20641331611839 0.229437132857080 0.220523676471977 0.223650760040701 0.226484418170035 0.229514955767953 0.231999841322798 0.23123035002574 0.220523676471977 0.229645754183291 0.261033407794382 0.238993066714269 0.220523676471977 0.227355162934422 0.223627072372073 0.226338151530106 0.220523676471977 0.23143075184689 0.229373376697827 0.238795165555775 3 3 + 5121671 5122107 5121911.273 5121429 5122569 + gene protein_coding_gene FALSE TRUE AT3G15210.1 ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4); DNA binding / protein binding / transcription factor/ transcriptional repressor Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-4). The protein contains one AP2 domain. Acts as a negative regulator of JA-responsive defense gene expression and resistance to the necrotrophic fungal pathogen Fusarium oxysporum and antagonizes JA inhibition of root elongation. Identical to Ethylene-responsive transcription factor 4 (Ethylene-responsive element-binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4) (ERF4) [Arabidopsis Thaliana] (GB:O80340;GB:O23107); similar to ATERF-8/ATERF8 (ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4), DNA binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT1G53170.1); similar to ethylene responsive element binding factor 4-like protein [Thellun (GB:AAM19703.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 1.45022537566600 7.15171911227782 7.60373213281865e-05 0.501998395408687 8.46983548294781 9.51019102898339 1.45022537566600 0.277002170666002
AT2G25490_at 9.5583446961883 9.5030019597678 9.81733484093596 9.86882263237738 9.4151829474681 9.98269902154374 8.34014307064208 9.34326519497598 8.69073206266931 8.28404879280215 10.3938037873952 10.0201980469967 10.4860993460457 10.1004286115372 10.0486419403026 10.5286992960394 10.5468236264694 8.98934524152325 8.6130284604045 0.127527457788146 0.126800828897927 0.130365926483923 0.126890639974185 0.134556460071095 0.132229758338647 0.142128744961060 0.130593187457401 0.135147334451874 0.155068851158342 0.126789803912182 0.128193228333284 0.133745910530604 0.13192330175171 0.136327171882407 0.126789803912182 0.132118791582641 0.149556065294709 0.154961655783607 2 2 - 10855129 10855668 10855385.182 10854453 10857610 - gene protein_coding_gene FALSE TRUE AT2G25490.1 EBF1 (EIN3-BINDING F BOX PROTEIN 1); ubiquitin-protein ligase Encodes an F-box protein involved in the ubiquitin/proteasome-dependent proteolysis of EIN3. similar to EBF2 (EIN3-BINDING F BOX PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT5G25350.1); similar to EIN3-binding F-box protein 2 [Lycopersicon esculentum] (GB:ABC24972.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE90278.1); similar to EIN3-binding F-box protein 1 [Solanum lycopersicum] (GB:ABB89717.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 1.09740317263390 7.14278613971023 7.67366186782721e-05 0.506538419895274 8.46296532206057 18.8128616749861 1.09740317263390 0.199879432869534
AT3G13800_at 6.02472185041912 6.13319267061254 5.01031463092126 4.74084719032259 5.41828591311550 4.80699924791219 6.21480011194909 6.6855509317913 5.46252527476558 5.76335725894081 4.98842368925197 5.71199154829487 5.09816595895039 5.79759940140174 5.28167297803061 5.13741838226003 4.49090308097135 5.01084895744243 5.64732408333729 0.265685627447403 0.246623579249714 0.263961534298661 0.251000736906948 0.248997551938095 0.258788602540706 0.255063229498897 0.244995093606579 0.254662021959478 0.246366392521980 0.252772430342533 0.249222552201913 0.24787811970634 0.253974914234309 0.244995093606579 0.244995093606579 0.253682709634026 0.254382863853360 0.244995093606579 3 3|0 +|/ 4539794 4541337 4540726.5 4538774 4541494 + gene protein_coding_gene FALSE TRUE AT3G13800.1|AT3G13800.2 metallo-beta-lactamase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30300.1); similar to Beta-lactamase-like [Medicago truncatula] (GB:ABE79762.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30300.1); similar to hydrolase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23415.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) -0.852614425865463 -7.13699693706589 7.7193596713962e-05 0.509477738312149 8.45850716159789 11.0363541710088 -0.852614425865463 0.142668467036724
AT2G42040_at 7.51763463025827 7.75544129397922 7.47495566404139 7.6247752285547 8.72275731410918 8.0153163654837 5.1646056524547 5.10180208415444 8.11986211148811 6.57642030229358 8.31346672503541 7.03950152760849 7.90417799819058 7.77563239666195 7.01819551858592 6.76195647027752 6.60436031614547 7.26679758103548 7.17965037607039 0.246549837584071 0.253252493323510 0.258804383265184 0.251460508520044 0.257000601116882 0.253051248086894 0.259635441176436 0.261138976597568 0.247721087775675 0.245024404812703 0.247804047421158 0.239994284948199 0.244213387043988 0.25803152332634 0.252261080534211 0.245950183620652 0.255863706768817 0.242119058719972 0.244338082409825 2 0|2 /|+ 17551526 17552101 17551850.444 17550112 17552308 + gene protein_coding_gene FALSE TRUE AT2G42040.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35859.1) 0.809056848955415 7.1236129351723 7.82616036854157e-05 0.516448322720058 8.44818287130463 14.4859053607844 0.809056848955415 0.132181922605453
AT3G63080_at 8.84270429285387 8.79869218652826 9.00042897509823 9.21119519455726 9.31494488058723 8.76192670875556 7.74607310706649 7.89015538351977 8.75841292364601 7.32437626920056 8.66701934918636 8.39221193394535 8.33369758499646 8.89086116277834 8.21947875901997 8.62965809989781 8.02602846792306 8.7172473360572 7.37962447847376 0.143348691471518 0.141128009057012 0.146429789350008 0.142541285836722 0.141128009057012 0.152234813115851 0.146318502458527 0.150317255074597 0.155469069937898 0.145881936314359 0.149628430561098 0.143966515152171 0.142603154412496 0.151468359992156 0.144315752088561 0.141128009057012 0.152092988541704 0.145841284096918 0.151874172627459 3 3|0 +|/ 23321169 23321908 23321611.222 23320712 23322361 + gene protein_coding_gene FALSE TRUE AT3G63080.1 ATGPX5 (GLUTATHIONE PEROXIDASE 5); glutathione peroxidase Encodes glutathione peroxidase. Identical to Probable glutathione peroxidase 5 (EC 1.11.1.9) (GPX5) [Arabidopsis Thaliana] (GB:Q9LYB4); similar to ATGPX4 (GLUTATHIONE PEROXIDASE 4), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT2G48150.1); similar to phospholipid hydroperoxide glutathione peroxidase-like protein [Hordeum vulgare] (GB:BAC55016.1); similar to Os03g0358100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050145.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Src homology-3; (InterPro:IPR001452); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.708219238438134 7.11883173890559 7.86470689568789e-05 0.518913360977487 8.44448876725308 16.848430038037 0.708219238438134 0.105683601268779
AT1G54210_at 6.44759035719108 6.57651368586633 7.25479051264637 7.40235496703158 8.04235259183921 7.3985995472146 6.1073079297762 5.94195632086401 5.583150880673 5.33794076743909 5.85901851220578 5.5919214866312 5.75719878087465 6.06718372652758 4.90144295164942 6.20544368337108 5.93596600235197 5.5228541801948 5.472578127421 0.259288742252955 0.258042015007358 0.269226608060589 0.260950508785518 0.258042015007358 0.271154395620448 0.262354068688811 0.265407555451241 0.284263710173159 0.258509563811797 0.266558723313782 0.260316834807559 0.258042015007358 0.262278413750238 0.273323340302144 0.258550753536761 0.272519093209965 0.268568299592013 0.258538000469412 1 0|1 /|+ 20245128 20245509 20245326.429 20244912 20246230 + gene protein_coding_gene FALSE TRUE AT1G54210.1 ATG12a (AUTOPHAGY 12); protein binding Identical to Autophagy-related protein 12a (AtAPG12a) (ATG12A) [Arabidopsis Thaliana] (GB:Q8S924); similar to APG12/APG12B (AUTOPHAGY 12) [Arabidopsis thaliana] (TAIR:AT3G13970.1); similar to Chain A, The Crystal Structure Of Plant Atg12 (GB:1WZ3); contains InterPro domain Autophagy protein Apg12; (InterPro:IPR007242) 0.76087720244499 7.11804963789088 7.87103216613154e-05 0.519251991999698 8.44388419350381 12.4937758677138 0.76087720244499 0.119915223351818
AT1G63840_at 7.01473968825006 7.74243559537809 9.48135043341799 9.6528978825985 7.64632709005265 7.97358041528912 4.66328825768817 5.90187506513784 3.62141288351424 4.70543861927304 3.9847613468535 4.20623229987622 4.20762109280468 4.63777849564593 4.04675265965875 5.7328697617433 5.3278332450154 3.73048234775960 4.10567120701117 0.292233652311981 0.278633125624415 0.282115802632274 0.283851159832524 0.279584889469343 0.29385379274386 0.274920487019474 0.27347310425764 0.278986337661152 0.27347310425764 0.275471036219077 0.276244697393765 0.281389913845625 0.276413847405774 0.285227231700075 0.27347310425764 0.27347310425764 0.278250713183543 0.280793979038793 1 1 - 23693693 23694119 23693913.545 23693360 23694470 - gene protein_coding_gene FALSE TRUE AT1G63840.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41400.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 1.34903573664811 7.11425500878277 7.90180104904794e-05 0.521202797195202 8.44094970952509 11.8237946248611 1.34903573664811 0.256690990505325
AT4G25830_at 4.47090423466718 4.72371879252335 3.0004126790533 3.61773619876177 3.64829516573338 3.51128070671555 6.84522496574398 6.5796487822401 6.07087675075977 6.01261636421934 7.26903033929724 7.55425603049918 6.6076094430429 7.15150719273724 6.35953332858005 6.45642886740648 5.42617700176210 7.20956404290982 6.25861403386678 0.253019494389280 0.238938898203750 0.255323740406129 0.254765811044091 0.253966468629531 0.268879539469612 0.250650940584537 0.244262317449955 0.250908307809649 0.249160913881565 0.239908636407702 0.238938898203750 0.238938898203750 0.238938898203750 0.239541730933549 0.238938898203750 0.23942223525981 0.256729795530270 0.241312993603399 4 4|0 +|/ 13133761 13134773 13134421.889 13133538 13135033 + gene protein_coding_gene FALSE TRUE AT4G25830.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT2G35760.1); similar to putative membrane protein [Gossypium hirsutum] (GB:CAE75666.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.78510772086512 -7.1084220308597 7.94935671821358e-05 0.524260075566185 8.43643507177824 10.9838021892105 -0.78510772086512 0.126496590848203
AT4G38520_at 7.9893324301316 7.97856889553951 7.89790094942678 8.12145571462233 8.31515852421024 8.06321559905487 7.9335990792274 7.77658303542241 8.11139294960554 7.68715645929349 8.87553973790868 9.03667709146385 8.70999625554215 8.97669151203763 8.9837680833145 9.05515980519344 8.39269002444084 8.76990471189904 7.84235399564248 0.118247543555232 0.116145003037972 0.124371424251946 0.11826185330371 0.115993450081159 0.128439667943022 0.124260368528645 0.119769381738739 0.123120054338279 0.126937188611137 0.119364542278895 0.115368972913017 0.118817946509198 0.119119831063235 0.116964759929565 0.115368972913017 0.123415577299341 0.122488759689742 0.123786987053964 4 4|0 -|/ 18016050 18016728 18016406.8 18015730 18018300 - gene protein_coding_gene FALSE TRUE AT4G38520.1|AT4G38520.2 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2C homolog [Mesembryanthemum crystallinum] (GB:AAD11430.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.57483205231309 7.10285576001526 7.99503215689209e-05 0.527192420425464 8.4321225115481 16.3746540472405 0.57483205231309 0.0643386105901456
AT1G70780_at 10.5329950339554 10.6265979636287 10.9705190515048 10.7057915213608 10.8407024701944 10.6579427063161 10.2241608699181 10.0508176423177 10.3507928141663 10.6516875389432 11.5080863643339 11.5645047485729 11.1806071679554 10.8946552157032 11.3388596402935 11.6437890776349 11.0203739389846 11.5924811288216 10.8698626191808 0.101064914094093 0.0870850941723565 0.0865546602527241 0.0878078799098916 0.0847603988092786 0.0877758120931147 0.0869137503780451 0.0937960215854893 0.114126815154022 0.0838607300001528 0.0857768735192111 0.0848993497124187 0.0869664591646073 0.0922183670299254 0.0878089582198493 0.0851682957924527 0.0920649860035193 0.0888638101274503 0.0838607300001528 1 1|0 -|/ 26699131 26699565 26699384.1 26698845 26700041 - gene protein_coding_gene FALSE TRUE AT1G70780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23150.1); similar to putative senescence-associated protein [Pisum sativum] (GB:BAB33412.1) 0.576950698039894 7.09765714640952 8.03795195130906e-05 0.529942172149806 8.42809095973206 21.5597078995916 0.576950698039894 0.0652788203499992
AT3G05120_at 7.84301788904221 8.29459929958669 8.16065407142246 8.45284398395076 8.93425918100853 8.40035690245037 6.60915962494035 7.36247415367986 5.29930874891305 5.47187790964427 6.34190050240986 5.61659026972815 6.43690550559771 6.51309628428329 5.72239003580786 6.01261525796768 7.01182760938518 6.109847545679 4.62285023129431 0.241159045466297 0.235134149646494 0.243762839117261 0.238222471330074 0.242575392510733 0.252953591801973 0.234344323014853 0.234344323014853 0.241730461998065 0.238440082906498 0.234344323014853 0.234344323014853 0.235622181363339 0.234695643607063 0.238782770803001 0.234344323014853 0.242385282053805 0.241975152566256 0.240942576185285 3 3 + 1431736 1432257 1431975.727 1430477 1432784 + gene protein_coding_gene FALSE TRUE AT3G05120.1 ATGID1A/GID1A (GA INSENSITIVE DWARF1A) Encodes a gibberellin (GA) receptor ortholog of the rice GA receptor gene (OsGID1). Has GA-binding activity, showing higher affinity to GA4. Interacts with DELLA proteins in vivo in the presence of GA4. Identical to Probable gibberellin receptor GID1L1 (EC 3.-.-.-) (GID1-like protein 1) (GID1L1) [Arabidopsis Thaliana] (GB:Q9MAA7); similar to ATGID1C/GID1C (GA INSENSITIVE DWARF1C) [Arabidopsis thaliana] (TAIR:AT5G27320.1); similar to (GB:ABG89394.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 1.02450839465128 7.09289741884908 8.07747099951799e-05 0.532466888288226 8.42439651090192 13.6831667664141 1.02450839465128 0.184920478984035
AT4G38240_at 6.58877750207786 6.43621978737657 7.09696141933477 6.81057298552341 7.32865854491133 7.09800938246865 6.17252815156474 5.80461068686319 5.39040544839375 5.43492928232608 6.03411988597129 5.60142340233898 6.13754939516798 5.62656554199436 5.53135487597424 6.29743220513918 6.45971696980274 5.43562094435671 5.36394056965874 0.189384932180462 0.19459616888246 0.192814576787442 0.194105598982816 0.194391104434534 0.203870718385073 0.203767327562502 0.200372669824143 0.212021773802396 0.196009881390546 0.189384932180462 0.189384932180462 0.19262728122832 0.193822823596356 0.197928970108842 0.194344217438290 0.196442225744120 0.204971725856339 0.193301037749088 4 4|0 -|/ 17932036 17933450 17932673.125 17931564 17935319 - gene protein_coding_gene FALSE TRUE AT4G38240.1|AT4G38240.2 CGL1 (COMPLEX GLYCAN LESS); transferase, transferring glycosyl groups|CGL1 (COMPLEX GLYCAN LESS) Encodes N-acetyl glucosaminyl transferase I, the first enzyme in the pathway of complex glycan biosynthesis. similar to N-acetylglucosaminyltransferase I [Nicotiana tabacum] (GB:CAC80702.1); similar to alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase [Nicotiana tabacum] (GB:CAB53347.1); similar to N-acetylglucosaminaltransferase I [Nicotiana tabacum] (GB:CAC80701.1); contains InterPro domain Glycosyl transferase, family 13; (InterPro:IPR004139) 0.663532176777972 7.08565581788601 8.13800777570204e-05 0.536376092496521 8.41876968392627 12.3104913088748 0.663532176777972 0.0938100726353304
AT3G54500_at 8.57045689411442 8.36048524445672 8.64347066956182 8.42628380719714 8.47085100727297 8.18425217045137 10.2132410721415 9.93047505340931 9.83254629646064 10.0565410894995 9.77420271256343 9.80778946094997 9.72666506124589 9.69860300401312 9.474818260055 10.5456012595761 9.74632890096563 9.26060987829677 10.7082018172845 0.13690873035013 0.134431810313520 0.137653947253528 0.136102038947269 0.134368029934146 0.141383250190919 0.136419347461636 0.134299811060655 0.137589135148514 0.130792231499502 0.131379055012396 0.129632370570770 0.130948146088520 0.131974607637296 0.131438972670783 0.134824355991628 0.148525912525353 0.134946033122498 0.130616161196212 3 3 - 20186789 20187597 20187125.091 20186382 20189960 - gene protein_coding_gene FALSE TRUE AT3G54500.1|AT3G54500.2 similar to dentin sialophosphoprotein-related [Arabidopsis thaliana] (TAIR:AT5G64170.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28297.1) -0.64110961814149 -7.08347895321651 8.15630304426945e-05 0.537500370617357 8.41707681838721 18.8266513489706 -0.64110961814149 0.0871057790072545
AT3G06350_at 9.03791372433612 9.04687215715532 8.62589503473938 8.27855137844408 8.57166319653043 8.11775756286989 9.25445423271436 9.23775625405327 9.36613079764538 9.51682458605093 8.82463698470537 9.00604355904688 8.88608928311139 8.88470158897843 8.51313703146635 8.84825226795184 8.63633437930756 8.96520000761538 9.4257567342017 0.135293745494174 0.134268464870164 0.138203704808399 0.146928065938259 0.139150577728684 0.141893798720217 0.136167486959827 0.136473594395097 0.144269616332060 0.134698094886147 0.135975135202284 0.134866289136326 0.137329074602760 0.1404829300318 0.151255474163318 0.139650128579086 0.140034862402146 0.135022130688017 0.133411483339633 3 3|0 -|/ 1924680 1925584 1924950.111 1924316 1927765 - gene protein_coding_gene FALSE TRUE AT3G06350.1 EMB3004/MEE32 (EMBRYO DEFECTIVE 3004, maternal effect embryo arrest 32); 3-dehydroquinate dehydratase/ NADP binding / shikimate 5-dehydrogenase Identical to Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplast precursor (DHQ-SDH protein) (DHQase-SORase) (Protein EMBRYO DEFECTIVE 3004) [Includes: Dehydroquinate dehydratase (EC 4.2.1.10) (DHQ); Shikimate dehydrogenase (EC 1.1.1.25) (SDH)] (EMB3004) [Arabidopsis Thaliana] (GB:Q9SQT8;GB:Q3ZLP7;GB:Q56ZH7;GB:Q6NLY1); similar to putative 3-dehydroquinate dehydratase/shikimate dehydrogenase [Fagus sylvatica] (GB:ABA54867.1); similar to 3-dehydroquinate dehydratase / shikimate dehydrogenase isoform 1 [Nicotiana tabacum] (GB:AAS90325.1); similar to dehydroquinate dehydratase/shikimate:NADP oxidoreductase [Lycopersicon esculentum] (GB:AAC17991.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Dehydroquinase class I; (InterPro:IPR001381); contains InterPro domain Quinate/Shikimate 5-dehydrogenase; (InterPro:IPR011342); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Shikimate dehydrogenase substrate binding, N-terminal; (InterPro:IPR013708) -0.680735141889294 -7.08080517555407 8.17883661241856e-05 0.538903544392259 8.41499662934304 17.8997513228081 -0.680735141889294 0.0989650306800872
AT3G62220_at 5.67658391664899 6.23866226442348 4.98347540676303 4.72054360817933 4.77982535490718 5.3609347591491 5.99166842469751 6.08263637157382 5.77605577816697 5.60128668318299 5.05378601443108 5.18888077781137 5.29779697148352 5.23110295917372 5.00591969447682 5.01875905256551 4.90295363970489 4.79176042580308 5.90163788270786 0.209802878912318 0.212866697866641 0.216481192973822 0.212883755332246 0.208092412675947 0.210659939218965 0.212340107025079 0.207857685501782 0.213449856499636 0.213702538631206 0.207618769254002 0.213352014609278 0.20960437386348 0.207618769254002 0.207618769254002 0.210091408966149 0.214742773067150 0.212227194467345 0.207618769254002 3 3 - 23040272 23041071 23040678.818 23040075 23042130 - gene protein_coding_gene FALSE TRUE AT3G62220.1 serine/threonine protein kinase, putative similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G47060.2); similar to Protein kinase [Medicago truncatula] (GB:ABE82412.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.867241567420493 -7.07997501421142 8.185846839029e-05 0.53928358975523 8.41435056656302 10.8898062916014 -0.867241567420493 0.147962092451491
AT2G03470_at 6.72411123041613 7.70472699387814 7.78681399146975 8.13490866076925 8.46639447911491 8.15537343028322 6.75096113059451 7.03945679482857 6.46766272472003 6.54835582922658 8.01047535950989 7.75261137909165 7.49619598241013 7.79781364095803 7.44786958512923 8.02536571168663 7.13566405067391 6.98841274249028 6.6044243380212 0.20979245484412 0.20979245484412 0.20979245484412 0.210027303379301 0.219692030196537 0.234819213453478 0.213030890074563 0.20979245484412 0.223932656389724 0.215093495349333 0.212914838616759 0.20979245484412 0.220560617720544 0.212505057957915 0.210124075519403 0.209902473905266 0.222434069623715 0.227486301869927 0.221808664829228 2 2 - 1045762 1046222 1046007.727 1045449 1047681 - gene protein_coding_gene FALSE TRUE AT2G03470.1|AT2G03470.2 myb family transcription factor / ELM2 domain-containing protein similar to ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G13880.1); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain ELM2; (InterPro:IPR000949)|similar to ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G13880.1); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain ELM2; (InterPro:IPR000949) 1.06135601440886 7.06195493428327 8.33965905441928e-05 0.549333341914598 8.40030323689407 14.6563176824941 1.06135601440886 0.194464553844842
AT2G01590_at 7.79688414680489 7.84271094305855 7.16105006564414 7.08960624383636 7.8172057983884 7.4269573996962 9.02802224753895 9.09046283812981 8.74169476870214 8.74273930474193 8.6409360091752 8.73066621947672 8.52534832333693 8.83634035551002 8.64461053094408 8.8994302579127 8.31402164824933 8.3777597828384 8.6995605634759 0.137119478004658 0.128047035904706 0.137520012701665 0.137779707998614 0.1310448076378 0.149680185467363 0.137320572539716 0.140009896513809 0.136317171920835 0.132453436824373 0.125353814686245 0.125353814686245 0.129311646204326 0.138564674424193 0.125353814686245 0.127784684861571 0.139096052999512 0.130347346742575 0.130910191775994 2 2 + 266674 267344 266921.727 266647 267797 + gene protein_coding_gene FALSE TRUE AT2G01590.1 unknown protein -0.586337119184003 -7.05423911994416 8.40648935620272e-05 0.553651388999511 8.39427475417965 16.5811811370057 -0.586337119184003 0.069952829755951
AT1G10060_at 6.03925129532576 6.28085681022672 3.78963649331438 3.65525743731751 5.06525824231662 4.80488472039482 3.61698638716102 3.96701399660767 4.77111082198746 2.39846568376387 6.04590123600927 7.01942185831877 5.27183111252445 5.25356902055301 6.66018179424424 5.84964878517582 4.1033851772815 5.50442399689115 4.155834370335 0.267893980110257 0.262660371225515 0.283101606399446 0.28461392610154 0.259950549872008 0.263355065744792 0.271402019189242 0.276210065446024 0.263871038265533 0.262078880917972 0.265527841646840 0.262498356242375 0.259950549872008 0.272200319710271 0.271437750377273 0.259950549872008 0.282091773213772 0.267554063293763 0.265872421932424 1 1|0 +|/ 3285474 3286318 3285776 3284241 3287109 + gene protein_coding_gene FALSE TRUE AT1G10060.1|AT1G10060.2 ATBCAT-1; branched-chain-amino-acid transaminase/ catalytic|ATBCAT-1; catalytic encodes a mitochondrial branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 1, mitochondrial precursor (EC 2.6.1.42) (Atbcat-1) (BCAT1) [Arabidopsis Thaliana] (GB:Q93Y32;GB:O80597); similar to ATBCAT-2, catalytic [Arabidopsis thaliana] (TAIR:AT1G10070.3); similar to branched-chain amino acid aminotransferase [Capsicum annuum] (GB:AAK57535.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786)|Identical to Branched-chain-amino-acid aminotransferase 1, mitochondrial precursor (EC 2.6.1.42) (Atbcat-1) (BCAT1) [Arabidopsis Thaliana] (GB:Q93Y32;GB:O80597); similar to ATBCAT-2, catalytic [Arabidopsis thaliana] (TAIR:AT1G10070.2); similar to branched-chain amino acid aminotransferase [Capsicum annuum] (GB:AAK57535.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786) 0.645570257467436 7.05104165386554 8.43435683034091e-05 0.555402397277949 8.39177411124487 9.39673433849317 0.645570257467436 0.089378110651896
AT2G05990_at 5.65873444678483 5.75033027842575 3.40239085740155 3.48772221200290 4.34768657914727 4.72657904473869 6.74085822628025 7.3408218834962 6.02304423080816 6.73569244389654 8.08505420088849 8.37932009364103 6.95228727366992 7.38337748344682 7.97784145360883 6.4827795636887 6.05750581024563 6.93115490704175 6.56920995436268 0.207761216887566 0.202862697539039 0.213278847715692 0.204458413241870 0.217671232481443 0.213116031645027 0.200372268070213 0.205091726160137 0.206749474997825 0.202508753823301 0.204975552367587 0.201202226687194 0.202468883301834 0.20768582244345 0.207152649171532 0.203572085782804 0.211056593801839 0.205316117523064 0.208548445386366 2 2|0 +|/ 2323790 2324826 2324209.4 2322219 2325143 + gene protein_coding_gene FALSE TRUE AT2G05990.1|AT2G05990.2 MOD1 (MOSAIC DEATH 1); enoyl-[acyl-carrier-protein] reductase (NADH)/ oxidoreductase Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves. similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29260.1); similar to enoyl reductase [Brassica napus] (GB:CAA64729.1); similar to enoyl-[acyl-carrier protein] reductase [Brassica napus] (GB:CAC41367.1); similar to enoyl-[acyl-carrier protein] reductase [Brassica napus] (GB:CAC41366.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.771537656750529 -7.04813315107293 8.45979425301516e-05 0.556992853618518 8.38949822822337 12.0437974283520 -0.771537656750529 0.124693916496459
AT3G47510_at 6.41312840160651 6.2230063664582 7.08457764886468 7.15305712575897 7.52758883708366 7.17897250980902 6.99994764549877 7.07400339585089 7.20480381602794 7.31638022452496 8.47280929210551 7.47242037930824 7.84910625322233 7.93418702327253 8.0080043251766 7.90625552992602 8.14029762142867 7.98889493205076 7.54015555776514 0.130105259990713 0.127383183737548 0.130657143686465 0.126968173378140 0.130458188997353 0.127871278001624 0.121309123032063 0.123476872468155 0.127840099691678 0.126032394352671 0.127907505089296 0.123516964068886 0.123878248707528 0.129506779505593 0.122450376366236 0.121278890157406 0.12863928717474 0.124823756306284 0.129337415860386 3 3|0 +|/ 17522162 17522576 17522470.5 17522084 17522801 + gene protein_coding_gene FALSE TRUE AT3G47510.1 unknown protein 0.588122315740405 7.04339184259844 8.50144254091418e-05 0.55964996246838 8.38578567467668 14.6194236342 0.588122315740405 0.0709003552765738
AT2G30550_at 7.46183348298021 7.78611918492725 9.05071784048746 9.08966930997995 7.42151442377215 7.11544984083986 6.55108884990022 6.91239692721614 6.80448887230016 6.74665897637589 7.06496558680894 7.59226731768674 7.44044818419463 7.39527868217643 7.15273502210708 7.58795994472691 6.36337494252751 7.2031332437275 7.02697080186057 0.175866720908057 0.177001839773776 0.189070662330938 0.188685237353029 0.175503575360119 0.192228931628934 0.179163121394269 0.173359785386346 0.188637033832919 0.176306305281785 0.175119424355408 0.176434055285445 0.177691593917646 0.184413049832409 0.177436088337674 0.173829330087458 0.195285184185054 0.177447971438096 0.175467976734348 2 2 + 13023095 13023984 13023452.818 13021925 13024230 + gene protein_coding_gene FALSE TRUE AT2G30550.1|AT2G30550.2 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06800.2); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921)|similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT1G06800.1); similar to Os01g0900400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045105.1); similar to putative DAD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89948.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.678562862248082 7.0372799726281 8.55546360827597e-05 0.563120614696724 8.3809953404751 14.7157953570162 0.678562862248082 0.0995474280403052
AT3G60390_at 5.42435159902694 6.01358649722633 4.50333552716631 4.166940922 5.00623050426835 5.17750305976121 5.57658264433396 5.73861950876663 5.32076137013582 5.46098986146132 4.91200091444027 5.53016760126064 5.41378272991003 5.31899440477427 5.08505934437367 5.12338588871689 5.06514024908321 4.83511074707098 6.38477204372682 0.259727066535107 0.262882039707685 0.260546808807379 0.264619147870057 0.258405770392785 0.253682070337242 0.263399170535111 0.260471578113484 0.253682070337242 0.257202060055855 0.257090380586175 0.253682070337242 0.255095342643029 0.260564033811966 0.255921998333689 0.253682070337242 0.268969707290198 0.253682070337242 0.270854447973509 3 3|0 -|/ 22331836 22332814 22332236.6 22331570 22333561 - gene protein_coding_gene FALSE TRUE AT3G60390.1 HAT3 (homeobox-leucine zipper protein 3); transcription factor Encodes homeobox protein HAT3. Identical to Homeobox-leucine zipper protein HAT3 (Homeodomain-leucine zipper protein HAT3) (HD-ZIP protein 3) (HAT3) [Arabidopsis Thaliana] (GB:P46602;GB:Q546G9;GB:Q9M220); similar to homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein 4 [Arabidopsis thaliana] (TAIR:AT2G44910.1); similar to homeobox protein (GB:AAA56904.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain HD-ZIP protein, N-terminal; (InterPro:IPR006712) -0.768250874596868 -7.03166960571155 8.60538502863199e-05 0.566320388734271 8.37659350760178 10.6422086128496 -0.768250874596868 0.124304495169461
AT2G37600_at 5.92318836601562 6.35303547237159 5.42054480396411 5.67323865557574 5.20835219570322 5.08952169003594 6.48025976732585 6.53248485131472 4.93238658684867 5.68246998506314 5.20511271287263 5.619372356545 4.99133524789147 4.94519432697175 6.01245143562678 4.88920870298091 5.16998602744736 4.19709087841114 5.70619779721542 0.202099466852729 0.195938523047131 0.195221365113584 0.206414518929667 0.195757230106285 0.198928188040246 0.205050817699591 0.21400783824834 0.203764417768181 0.208155917455153 0.198345914349702 0.1935882662981 0.199009507066013 0.204641407894382 0.201928212857058 0.194579231671668 0.198420868731985 0.216210191404833 0.199237993044598 2 2|0 -|/ 15781743 15782222 15781955.6 15781323 15782452 - gene protein_coding_gene FALSE TRUE AT2G37600.1|AT2G37600.2 60S ribosomal protein L36 (RPL36A) Identical to 60S ribosomal protein L36-1 (RPL36A) [Arabidopsis Thaliana] (GB:O80929); similar to 60S ribosomal protein L36 (RPL36B) [Arabidopsis thaliana] (TAIR:AT3G53740.4); similar to ribosomal protein L36 [Triticum aestivum] (GB:AAW50980.1); contains InterPro domain Ribosomal protein L36E; (InterPro:IPR000509) -0.642980136609778 -7.03037416797414 8.61695746188448e-05 0.566995800991999 8.37557649987295 11.1196134340229 -0.642980136609778 0.0891644512750966
AT3G06170_at 9.25191185634046 9.19018337586346 9.45251623512862 9.5570863389071 9.8092072950394 9.8322269661674 8.9943327470184 9.04496400882014 8.4640011713864 8.66270515713524 8.9360680989672 8.70950478646233 9.2339446111592 9.05889403002285 8.69007211799287 9.08014888886559 9.32067799924822 9.04233440673765 8.59514036871997 0.138010363483217 0.138909280424176 0.136525715704081 0.143416255710911 0.138246877209719 0.137800473789266 0.136614109157471 0.138950106512573 0.140960758048128 0.147133733513865 0.136214656135838 0.134745447086714 0.133409886330785 0.144513462937971 0.135867715673924 0.133067479712226 0.149018649814465 0.139455715825544 0.140129187990587 3 3|0 +|/ 1869077 1869694 1869385.8 1867421 1869954 + gene protein_coding_gene FALSE TRUE AT3G06170.1 TMS membrane family protein / tumour differentially expressed (TDE) family protein similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT1G16180.1); similar to Os03g0454100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050476.1); similar to TMS membrane family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97020.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) 0.488708965075739 7.03000689425918 8.62024151773204e-05 0.567125689451591 8.37528812231102 18.1830058611669 0.488708965075739 0.0231134842454428
AT1G53090_at 7.53450038409824 7.58076194230855 7.62853116838281 7.59212796999071 7.71230945897827 7.6208584731003 8.70530511284137 8.80270583237286 8.07312293811791 8.31431790115696 7.35976154625773 7.50739004840153 7.94212013728615 7.78511499041247 7.32383383473077 8.18553840257007 8.1907213028484 7.61921936573434 8.22503914132187 0.153241830710274 0.143016068689271 0.148363826312298 0.143876386056121 0.145956639576391 0.150114082362264 0.147441441421333 0.152287819691389 0.156936096192658 0.145678106879199 0.152082961055919 0.148014071805502 0.148055044042467 0.154924906513716 0.159239584385684 0.146230536170517 0.155393837074710 0.152154491171180 0.147092747583322 1 1 + 19789475 19790317 19789957.091 19787020 19790570 + gene protein_coding_gene FALSE TRUE AT1G53090.1|AT1G53090.2 SPA4 (SPA1-RELATED 4); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. similar to SPA3 (SPA1-RELATED 3), signal transducer [Arabidopsis thaliana] (TAIR:AT3G15354.1); similar to Os05g0571000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056370.1); similar to Os01g0725800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044115.1); similar to Cop1 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87451.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.491154545147146 -7.02921628874344 8.62731556366558e-05 0.567504817777922 8.37466728763861 15.8688237662904 -0.491154545147146 0.0252656890950551
AT1G65000_at 4.90092361266361 5.10270382038078 5.93305265118366 5.51599222006642 6.02142436654314 6.03829584833054 3.73271217823792 4.12591675599832 4.37565678691691 4.20579659298762 4.14072847744669 4.12452226917208 4.20799982358069 4.75013740323384 4.09771243586909 4.2818305567942 4.50764051412697 4.48642989909697 4.44242672106157 0.232590778409643 0.233187493379992 0.242903203567833 0.232768332286756 0.227414612691372 0.244694365266703 0.225906142075154 0.229435481142205 0.225709987825773 0.226088768685359 0.2311267917135 0.225622083719360 0.231486107602626 0.229558751461290 0.236299986284950 0.225804892571836 0.23173551025595 0.234189922530508 0.225622083719360 1 1 + 24150863 24152173 24151732.727 24150707 24152352 + gene protein_coding_gene FALSE TRUE AT1G65000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38060.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP21387.1) 0.697479492568573 7.02811227975638 8.63720452910943e-05 0.568068941879528 8.37380020287372 9.50433695137743 0.697479492568573 0.10520088838895
AT1G16870_at 7.12333403365046 7.18893693168277 6.85880481546017 6.61247817183676 6.96713629688751 6.64816546827302 7.36497995026419 7.60001800884333 6.72853780478701 6.53939411455912 5.40513600982877 5.97091403364191 5.64126614910376 5.55888983366488 6.51300133533899 5.97252379875412 5.57822007351338 6.05486411602539 6.31029802496923 0.201025337456806 0.202280841768389 0.202950066071 0.202751353700865 0.202168023130327 0.212439341770733 0.202232177676887 0.205221980252956 0.204862046580594 0.203855297496183 0.199740486288013 0.197726487341129 0.203811998616037 0.197726487341129 0.199145087230157 0.197726487341129 0.236211857217801 0.220676147569805 0.203753287187456 1 1|0 -|/ 5770969 5771869 5771521.2 5770727 5773244 - gene protein_coding_gene FALSE TRUE AT1G16870.1 mitochondrial 28S ribosomal protein S29-related similar to Os07g0202900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059138.1); similar to Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 (ISS) [Ostreococcus tauri] (GB:CAL53223.1); contains domain SUBFAMILY NOT NAMED (PTHR12810:SF2); contains domain FAMILY NOT NAMED (PTHR12810); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.618447886183521 -7.02782160728789 8.63981025229165e-05 0.568153922190699 8.37357188156144 13.2269459930318 -0.618447886183521 0.0815316766770777
AT3G06720_at 7.51251211579811 7.58702128832556 8.08856731166823 8.23813798796474 7.65215765624093 7.79756572956407 7.7917546632362 7.84007673043547 6.42421306567153 6.79522244491627 7.3259499076835 7.35069914034576 7.17549626463768 7.62818377940259 7.34550886656168 7.61513731175801 7.54728063935943 7.05062859889048 6.63335591729061 0.188357930450559 0.186133157795363 0.183354058946777 0.183354058946777 0.189068138706762 0.197709567361394 0.186788708950243 0.187796581609148 0.210515916609338 0.198165081583599 0.189663411757670 0.196566318795912 0.188779351610544 0.199014849175475 0.185713317673463 0.187164931035563 0.197708507318054 0.194833740541287 0.198824246528349 3 3 + 2122954 2123536 2123299.727 2120330 2124137 + gene protein_coding_gene FALSE TRUE AT3G06720.1|AT3G06720.2 AT-IMP (Arabidopsis thaliana importin alpha); protein transporter Encodes importin alpha involved in nuclear import. Identical to Importin alpha-1 subunit (Karyopherin alpha-1 subunit) (KAP alpha) (KAP1) [Arabidopsis Thaliana] (GB:Q96321;GB:O49599;GB:O81520;GB:Q940R6;GB:Q9C841;GB:Q9ZRI5); similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to importin alpha-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G02690.1); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to Importin subunit alpha (Karyopherin subunit alpha) (KAP alpha) (GB:O22478); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.511764696432206 7.02210019992684 8.6912762683941e-05 0.571451414646912 8.36907536161595 14.8122030385072 0.511764696432206 0.0392347913936995
AT2G20950_at 4.53329445282403 4.76627637318909 5.79117095991933 5.44151998395172 6.38446296908001 5.86586573827509 5.43405568320869 5.22659580400745 5.92819689779601 5.45961131760110 6.32701966065711 6.59286785620645 6.44793744150192 7.00202469400342 6.02569261627104 6.44016888619534 5.81594376350381 5.93540726299633 5.69787516235499 0.230179276903557 0.223744559614146 0.245266350835645 0.230548354960598 0.247083544357828 0.225077369408536 0.234738126882671 0.228296452236747 0.239619867217280 0.232224987885928 0.221778519410621 0.226311277842194 0.231929927834121 0.221778519410621 0.225047588476576 0.226284555952762 0.228341892476027 0.230560369082267 0.226582459455948 2 2 + 9011994 9012889 9012330.3 9010216 9013019 + gene protein_coding_gene FALSE TRUE AT2G20950.1|AT2G20950.2|AT2G20950.3|AT2G20950.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38550.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38550.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.75442715729106 7.02115690339621 8.6997939244739e-05 0.571924452594914 8.36833357663301 11.4397105281824 0.75442715729106 0.120955067620702
AFFX-r2-At-GAPDH-5_s_at 11.8330879607615 11.8663966852763 12.2245371176056 12.2111045474856 11.8827699356422 11.5589520723748 11.9353856980086 11.8642065538372 10.8268984032690 10.7402051011655 11.6505678807789 11.8221124134765 11.7127299758042 11.6584801319700 12.0270665283142 11.5154358535855 11.4582481495036 11.3821912324087 10.3697317238600 0.0660214332375741 0.0664504692697644 0.0681124268807743 0.066380935471258 0.0658404874068713 0.0748732377130826 0.0700372315045286 0.0673875277118906 0.0735928672056016 0.0710597622885062 0.0659661880149769 0.0654964070868633 0.0685521785079289 0.0695382719426569 0.0668108681831794 0.0686721655079125 0.0767599553996811 0.067323584271136 0.0725804780277603 NA NA NA NA NA FALSE FALSE 0.55115698588577 7.01986520353496 8.71147246636487e-05 0.572605085214163 8.367317614979 23.0715379531215 0.55115698588577 0.057711689546413
AT1G58110_at 6.17467350266764 6.3809771698319 6.04181082079931 6.19985541641173 5.54625854010909 5.97733651424577 3.80870011616065 4.19892292349674 5.30729771999027 4.59779857641965 5.15236984135048 5.4416412758101 5.11280002043437 5.71613979798177 5.77391672733465 5.9007313197752 6.09584479209679 4.7268531893119 4.67993652202418 0.242139602691574 0.225294218401821 0.230506288774554 0.237214734222608 0.231801795073018 0.232143123656534 0.233279597412087 0.239851475721336 0.233821749735262 0.227524040500515 0.225294218401821 0.227085765553175 0.235955437390348 0.232277724953348 0.233485801564157 0.229164540878652 0.236041386819886 0.229451034032069 0.231925351287854 1 1 - 21519505 21520346 21519807 21519139 21521824 - gene protein_coding_gene FALSE TRUE AT1G58110.1|AT1G58110.2 bZIP family transcription factor|DNA binding / transcription factor similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G35490.1); similar to Eukaryotic transcription factor, DNA-binding [Medicago truncatula] (GB:ABE89685.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.714428204609725 7.01783578650847 8.72985576256713e-05 0.573726120715911 8.36572094686403 10.7169242387937 0.714428204609725 0.110218480933015
AT1G79390_at 6.059654857351 5.80280515688154 4.63358219307703 5.51724298196995 5.08180453245327 5.01946150236059 6.49854699359343 7.03861291030024 5.54173299617369 6.02319227948255 4.82029065118927 5.03431019302478 5.24633227993907 5.02515646605762 4.87413828896175 4.86801825100402 5.03905078946029 4.71932516385655 5.50920166908536 0.216834432044476 0.211450751094164 0.211516437944872 0.213743814313168 0.209694377069645 0.202450387325515 0.220865417057348 0.213361535486814 0.208402857281071 0.208191373752274 0.204794928883609 0.207921170945542 0.204908404631638 0.204363398678999 0.207527204146353 0.206907248222413 0.209126170250332 0.212091506225065 0.205642844924497 1 1 - 29868371 29869094 29868755.091 29868118 29869214 - gene protein_coding_gene FALSE TRUE AT1G79390.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23141.1) -1.01246503243844 -7.00819913926099 8.81773361759176e-05 0.579413276011955 8.35813136683518 11.0288155953403 -1.01246503243844 0.184965080261844
AT3G56130_at 4.55504056409919 5.15304074422837 3.29987681776474 3.21762875345019 5.18221752752234 4.62300849196217 6.72813127015662 6.62105013495583 5.44554186470258 5.41113693173286 6.50601959002214 6.65695664557206 6.2344244756937 5.66604550546056 6.4438205349295 4.99498389540808 3.81424187642806 5.35700376133595 6.26465878953242 0.249128794675333 0.251368731299265 0.26008270903881 0.256766429386829 0.249320993593178 0.257063584679821 0.258415184242354 0.249128794675333 0.261866473953557 0.263263943745048 0.260587649099698 0.249128794675333 0.249128794675333 0.262673260935789 0.254225388457106 0.249128794675333 0.273924369356086 0.261020720013848 0.256007322185129 3 0|3 /|+ 20839172 20839961 20839410.375 20837637 20840249 + gene protein_coding_gene FALSE TRUE AT3G56130.1|AT3G56130.2|AT3G56130.3 biotin/lipoyl attachment domain-containing protein|binding similar to biotin carboxyl carrier protein of acetyl-CoA carboxylase-related [Arabidopsis thaliana] (TAIR:AT3G15690.2); similar to Single hybrid motif [Medicago truncatula] (GB:ABE84884.1); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053)|similar to biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52670.1); similar to Single hybrid motif [Medicago truncatula] (GB:ABE84884.1); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.840779136867421 -7.00685804463572 8.83004027682039e-05 0.5801336461871 8.35707412809244 10.6306490701485 -0.840779136867421 0.143598886665375
AT2G19180_at 6.26078880581367 6.58395610192732 6.2878769218075 6.57724518541731 7.55800514522097 7.53472887128274 5.69898560479388 5.97451749626822 5.29577971197975 4.67247102039194 5.3813847743102 5.38471079274264 5.61629286110602 5.49029726647299 4.97746539584557 5.71501918096565 5.59924288718464 5.76670214047971 5.24435023137987 0.265674019278989 0.259557610454914 0.268721057700918 0.268585897565660 0.260577986728613 0.267222854605743 0.272678140602142 0.256505461030071 0.279993726951626 0.260722625639445 0.258753059507161 0.261415115787625 0.256560456920191 0.266014096390923 0.263087568769774 0.255776086014890 0.272332288244187 0.262735214756637 0.260794017877411 2 2|0 +|/ 8331825 8332610 8332030.8 8331798 8333043 + gene protein_coding_gene FALSE TRUE AT2G19180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78890.1); similar to At1g16840/F17F16.27-related [Medicago truncatula] (GB:ABE84583.1) 0.6402122266013 7.00512913726116 8.84593365209149e-05 0.58108938160589 8.35571079064279 11.8406412167193 0.6402122266013 0.0890232452411358
AT1G75840_at 6.38158728260146 6.59182178863412 6.00187837477128 6.22694397384247 7.36806874016522 7.24694461392918 6.2504748600922 6.25667598521935 6.42775050759805 5.07473766712326 7.09959359448639 6.25558837964645 6.61612905696111 6.56207877987573 6.64268415042509 5.84967591252976 5.92404567162259 6.34734117607383 5.46845084293196 0.199421785981862 0.203400995053073 0.203759016368103 0.211226639519986 0.208479717152428 0.205210203681948 0.198818007388612 0.200813569306114 0.199363919135290 0.204640381564246 0.19765203674505 0.203015582055227 0.203348561376953 0.200316320672243 0.19765203674505 0.201599463180393 0.213187878179611 0.209382977077379 0.203155205677684 1 1|0 +|/ 28479649 28481010 28480547.5 28479368 28481463 + gene protein_coding_gene FALSE TRUE AT1G75840.1 AT1G75840.1/ATGP3/ATROP4 (RHO-LIKE GTP BINDING PROTEIN 4); GTP binding / GTPase Belongs to the plant-specific ROP group of Rho GTPases; localized to the plasma membrane of tips of root hairs; involved in polar growth control. Identical to Rac-like GTP-binding protein ARAC5 (GTPase protein ROP4) (ARAC5) [Arabidopsis Thaliana] (GB:Q38937;GB:O48545;GB:Q9LQT0;GB:Q9ZRD5); similar to ARAC4/ATRAC4/ATROP2/ROP2 (rho-related protein from plants 2), GTP binding [Arabidopsis thaliana] (TAIR:AT1G20090.1); similar to RAC-like G-protein Rac1 [Gossypium hirsutum] (GB:AAD47828.2); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.547990682095893 6.99291230819217 8.95914162774807e-05 0.588436422110493 8.34606525872373 12.5751103337838 0.547990682095893 0.0572815065732478
AT1G70300_at 6.2613604564191 6.73605914462545 7.30271565231877 7.39813953245107 7.08386674316238 6.82066146636876 6.03038876548553 6.28433173067103 4.2687737310772 4.86441260350499 4.63707300253953 4.3350506465699 5.6276083434206 4.99206977984032 4.4914868334787 5.25037915454735 6.39487870543922 4.64160164120888 4.31854299545872 0.27802344891463 0.280897702390277 0.284269663043457 0.282237594603652 0.291902865663797 0.286843507768529 0.284300018142687 0.28402221805511 0.280150903363705 0.280070592621043 0.27802344891463 0.27802344891463 0.27802344891463 0.278969325563013 0.279222573699516 0.27802344891463 0.280879271686518 0.283127659658984 0.280360738132975 1 1 - 26481699 26482231 26482045.909 26481543 26485293 - gene protein_coding_gene FALSE TRUE AT1G70300.1 KUP6 (K+ uptake permease 6); potassium ion transporter potassium transporter Identical to Potassium transporter 6 (AtPOT6) (AtHAK6) (POT6) [Arabidopsis Thaliana] (GB:Q8W4I4;GB:O64607;GB:Q9M7K0); similar to KT2 (POTASSIUM TRANSPORTER 2) [Arabidopsis thaliana] (TAIR:AT2G40540.2); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to putative high-affinity potassium transporter protein 1 [Nicotiana tabacum] (GB:ABI14646.1); similar to putative high-affinity potassium transporter 1 [Nicotiana rustica] (GB:ABF85693.1); similar to putative high-affinity potassium transporter protein [Phytolacca acinosa] (GB:AAX13997.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.692834780487612 6.98809616745596 9.00420838692368e-05 0.591306364769278 8.34225704445022 11.5047795814682 0.692834780487612 0.105009907779213
AT2G32010_at 5.95442043290375 6.33832585532922 5.22614665049054 5.3299702045666 6.579749787324 5.82954173560552 6.84216824316027 6.6716847343002 6.73883036179415 6.57854760953357 5.18411079230037 6.22171522230242 6.33992533989089 5.80905975357067 5.29264231967318 6.36595250608206 5.53972548719542 4.78739169498348 6.80376580058021 0.242987393348114 0.236614414800128 0.244576905607367 0.241695779147911 0.240040875055840 0.249196265052228 0.246452231686027 0.251022583282675 0.246819598482841 0.24065205295226 0.23837063097787 0.237004874676161 0.241018795109562 0.2418603011433 0.248595116151757 0.240172564889287 0.254414206347812 0.251376140550662 0.238909590268486 2 2|0 +|/ 13634336 13635133 13634794.1 13631869 13636223 + gene protein_coding_gene FALSE TRUE AT2G32010.1 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G05470.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G63240.1); similar to putative phosphatase (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07328.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE87137.1); similar to putative inositol polyphosphate 5-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAO37964.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.862390128198096 -6.97760635007462 9.10323279525918e-05 0.597718265336718 8.33395130353148 12.2963076121946 -0.862390128198096 0.149873676766115
AT2G31880_at 11.8394887079873 11.9437323122202 12.2635049939896 12.3370678337739 11.7019008730394 11.5579336914721 9.39690522442383 9.5321238466978 11.1731040401558 9.91528479026065 10.2221187479835 10.3938051892109 9.91124640874066 10.4098899225917 9.7858556986425 10.2526579768181 9.8342675459622 10.1285089408298 10.0597924155085 0.106830878819409 0.109272314194422 0.110190138498665 0.112673381282385 0.111914762927160 0.114333953212521 0.111816291264893 0.108646583998575 0.109133606942833 0.109262409478286 0.105403437570505 0.105403437570505 0.108792464680022 0.1087971984895 0.112958961827203 0.105403437570505 0.113980642238446 0.108164319360351 0.113299453510311 2 2 + 13563362 13563895 13563606.636 13561973 13564054 + gene protein_coding_gene FALSE TRUE AT2G31880.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G33170.1); similar to receptor-like protein kinase [Nicotiana tabacum] (GB:BAC07504.2); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.510803023554452 6.97260822654439 9.150836679002e-05 0.600752427976482 8.32998840859382 21.5715926283617 0.510803023554452 0.0406913472446823
AT3G14770_at 2.65741784545915 3.68132205902345 3.39026141021041 3.68373256513165 4.52736744853897 3.90584249159259 8.19313262932513 8.43912842399392 7.42356301680936 6.50844254986212 7.25693937850164 7.0883670815034 6.06348339656879 6.56804032901655 6.20725874527660 6.50228675808665 5.83738775819201 5.65284995702234 6.55076692858681 0.266475828603627 0.268848817896438 0.259116745875613 0.257776232908668 0.257776232908668 0.268885068749355 0.266110898934505 0.259311679982323 0.266631790874178 0.257776232908668 0.257776232908668 0.257776232908668 0.257776232908668 0.269242686157594 0.266258383242243 0.263984035670768 0.288507578156586 0.268872454621113 0.257776232908668 3 3|0 -|/ 4957796 4958595 4958252.4 4957343 4959711 - gene protein_coding_gene FALSE TRUE AT3G14770.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT1G21460.1); similar to senescence-associated protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92465.1); similar to Os01g0541800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043270.1); similar to Os01g0700100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043983.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) -1.14823170840689 -6.97099450015195 9.16626486577973e-05 0.601673625789782 8.3287081740715 11.4221093627963 -1.14823170840689 0.217616660194139
AT3G55050_at 6.44693952682221 6.4818118235858 6.69768554251341 6.82111260598986 7.32676947375627 7.25266796295764 6.37662280170706 6.68626028501247 6.8229179721664 6.89570798162272 8.08107045992316 7.61846698588995 7.38699664245156 7.16743403400819 7.57613144949901 7.30952721927196 7.10191583615742 7.06997635431803 6.79784737931451 0.233901349712605 0.228315919029214 0.234318809194060 0.235657954181346 0.237249343893530 0.238453614779372 0.234710307601827 0.241669215543298 0.238730951074167 0.229211001229725 0.229133249803440 0.229262451263389 0.226316900219220 0.246411068731318 0.230831041342672 0.228358672579937 0.242012620698123 0.233223012237448 0.226316900219220 3 3|0 -|/ 20411683 20412260 20411910.889 20411465 20413572 - gene protein_coding_gene FALSE TRUE AT3G55050.1|AT3G55050.2 serine/threonine protein phosphatase 2C (PP2C6) similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT3G12620.2); similar to protein phosphatase 2c-like protein [Thellun (GB:AAM19705.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.55088285767222 6.96339125482395 9.2393428728657e-05 0.606378072746176 8.32267128999834 13.8876159113220 0.55088285767222 0.0594000452348596
AT4G35110_at 7.41479312186267 7.52292629456489 8.5380243274898 8.35352782718375 8.06419269372253 7.58346922739078 7.31207432461857 6.96291821579714 6.27949721091524 6.5385267475741 7.21153366703572 7.04935817811338 7.29118354928916 7.47750691625285 6.45166553312212 7.70489437043367 6.86599936822476 6.60046038919282 6.6885584453004 0.199973327664584 0.196960223144687 0.201154291903594 0.207914426327518 0.19577725843401 0.197214687729194 0.194759379312412 0.202815945470301 0.212600763830310 0.198911108882736 0.205720862992563 0.201449002657639 0.192991629545536 0.205374641379055 0.213830696738543 0.192991629545536 0.203025407161122 0.204407820065844 0.216997779706283 4 4 - 16712753 16713214 16713022.727 16712467 16714958 - gene protein_coding_gene FALSE TRUE AT4G35110.1|AT4G35110.2|AT4G35110.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16900.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.70550332079869 6.96332807478117 9.23995280434897e-05 0.606378072746176 8.32262109178056 14.5108754446061 0.70550332079869 0.109276419649960
AT3G60450_at 7.81870576924174 7.95195799999138 8.64407683423588 8.74840709857188 6.9797449487093 6.41192366542397 5.33362889187664 5.41429000093611 6.34930002098166 5.06756956057916 5.70427204679396 6.69520737149943 4.80378358954743 6.41316154743102 6.39485933963219 5.64461804515494 5.62171647500349 6.0750403852704 5.43004115118864 0.223285087782532 0.222994477364188 0.223561295700855 0.231779515512238 0.222177347558042 0.227789106219477 0.243276341031189 0.22477669393584 0.233503798220759 0.229488902348913 0.223100670015666 0.225934418474311 0.228546487074534 0.219867345314171 0.222112497995056 0.221998875911404 0.226803099471848 0.221062384790365 0.219867345314171 3 3|0 +|/ 22352190 22353138 22352658.2 22351932 22353285 + gene protein_coding_gene FALSE TRUE AT3G60450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60440.1); similar to pRIB5 protein [Ribes nigrum] (GB:CAA07566.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078); contains InterPro domain PRIB5; (InterPro:IPR012398) 0.684918955174455 6.96220710532201 9.25078186525334e-05 0.606943798179271 8.32173035853092 12.9302015316024 0.684918955174455 0.103481506641016
AT3G52800_at 9.5022729277232 9.69303846386679 10.3504282643419 10.3734300117363 10.1852310299574 10.0408728316293 9.67016929439405 9.8176560400493 9.10003005079323 9.17050192635716 9.78616662344256 9.38894176430398 9.86690449785229 9.6543188950777 9.19533305877284 9.84258540714868 9.80788685548259 9.52796619966375 9.1736872257141 0.0957065085532723 0.0911918124906776 0.0945732554010186 0.0918166766326706 0.0935220121652685 0.0928595313308404 0.0916082097387248 0.0904034714664732 0.103799032019780 0.0949409520176626 0.0904034714664732 0.093321376843757 0.0909189177231887 0.0960619525053393 0.095417245163483 0.0904034714664732 0.092211340924952 0.0983856678260963 0.0920350902476086 3 3 + 19580790 19581189 19580978.727 19580289 19581660 + gene protein_coding_gene FALSE TRUE AT3G52800.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 6 (AtSAP6) (SAP6) [Arabidopsis Thaliana] (GB:Q94B40;GB:Q9LXI5); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G36320.1); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.526198099002206 6.96216243587821 9.25121368129135e-05 0.606943798179271 8.32169486009512 19.3450553481320 0.526198099002206 0.048797794330821
AT1G12990_at 8.41678722530867 8.68292973516076 8.60816833006892 8.97566606846431 7.96132674953263 7.6986367766377 7.47658447894035 7.80423392278948 6.67410339690987 4.88749875704851 7.1168712598006 6.89746754865748 7.28715464542626 7.17730958474403 6.58720227054248 6.46811150467026 6.61820464663604 6.99667461256965 5.58483042495784 0.252583837299843 0.254369153271735 0.252301426456619 0.254960596728384 0.250557334631367 0.253163799256986 0.255735491723518 0.249310179729955 0.263034038154079 0.262097073214437 0.248740349296418 0.250575055149536 0.250698311179641 0.252873932149522 0.256164466407558 0.248347527201794 0.273507191227888 0.247569637638567 0.257229023260132 1 1 + 4434964 4435502 4435235.091 4433638 4436073 + gene protein_coding_gene FALSE TRUE AT1G12990.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G27540.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G67880.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); similar to beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula] (GB:CAI70376.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) 0.69698131172576 6.95940161838495 9.27794541675295e-05 0.608540439884826 8.31950031670181 14.5075926785810 0.69698131172576 0.106992940974904
AT4G29410_at 9.035670410289 9.05895030420501 8.58610191482877 8.37066615361694 8.45306701521455 8.2320029110954 9.25371173289819 9.08433033020637 8.29724648277175 8.18700098238214 7.71089152763103 8.42455962885304 7.8537456097773 7.61149664072839 8.6662090480834 7.53373705634394 7.62238431910233 7.86352612389019 8.48330613845273 0.156480444229159 0.159576160509047 0.158687794365952 0.161651074841949 0.156898277407995 0.163206910558654 0.159355362580227 0.159814689917830 0.166969609531725 0.155755346205526 0.160191548754917 0.154587435707475 0.161426169652157 0.157001807538932 0.155686982535378 0.157110125749657 0.168614875478769 0.163862898919787 0.157708668798718 4 4|0 -|/ 14468467 14469946 14469354.2 14468250 14470173 - gene protein_coding_gene FALSE TRUE AT4G29410.1|AT4G29410.2 60S ribosomal protein L28 (RPL28C) Identical to 60S ribosomal protein L28-2 (RPL28C) [Arabidopsis Thaliana] (GB:Q9M0E2); similar to 60S ribosomal protein L28 (RPL28A) [Arabidopsis thaliana] (TAIR:AT2G19730.3); similar to unknown [Solanum tuberosum] (GB:ABA46763.1); contains InterPro domain Ribosomal L28e protein; (InterPro:IPR002672) -0.554702659639199 -6.95877496644452 9.28402483817686e-05 0.608846348887639 8.31900204867623 16.8759809026293 -0.554702659639199 0.0610649854778482
AT3G24100_at 7.1207206763491 7.92966095911728 8.94540148062484 8.91616581713821 9.1460293884536 8.92449220565768 8.27167894020313 8.40671001709918 7.89890642775483 8.49120355601003 8.94894254770204 8.84867824508588 9.13341427509733 9.1546532805867 8.26007113024899 9.42489542730977 9.38844660579527 9.06663850932442 8.75490431163102 0.187057036244660 0.179034320812305 0.174941395720926 0.177126707798106 0.173605813045334 0.179245353270192 0.172880942065259 0.181395894410001 0.179388170130831 0.172063057323634 0.191228398395776 0.174910376674323 0.172063057323634 0.179040754075813 0.181486620620915 0.173652851927347 0.189901373304244 0.172063057323634 0.186509928298077 3 3|0 +|/ 8703781 8704005 8703838 8703293 8704235 + gene protein_coding_gene FALSE TRUE AT3G24100.1 similar to four F5 protein-related / 4F5 protein-related [Arabidopsis thaliana] (TAIR:AT4G13615.1); similar to Four F5 protein [Medicago truncatula] (GB:ABE85543.1); contains InterPro domain Four F5 protein; (InterPro:IPR007513) 0.848687822810794 6.95659092554766 9.30524747278928e-05 0.610145076790793 8.3172650263702 17.1625519028016 0.848687822810794 0.147101678201683
AT2G44270_at 4.9412578489538 5.38719321145418 4.67631238482083 4.68602362058786 4.73205681719953 5.08562135538823 5.41395080578248 5.40193483326224 5.55681778625434 5.66869566320875 4.65911505220955 4.62977832284983 4.9957041939224 4.73906790993935 4.39767788040127 4.82435770666589 5.52627632291836 4.61199833927166 5.69597768104216 0.262630867645334 0.250341235107297 0.260395361653527 0.251659959569985 0.250341235107297 0.262954713091997 0.264415535561620 0.252209752301333 0.258855392330927 0.263932281671711 0.25641228090031 0.256533502928816 0.254815342406647 0.266228405494403 0.27337625021681 0.259209388098974 0.280603500905965 0.265310170884068 0.256424242730605 2 2|0 -|/ 18305270 18306108 18305650 18304954 18307270 - gene protein_coding_gene FALSE TRUE AT2G44270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76170.1); similar to MGC107918 protein [Xenopus tropicalis] (GB:NP_001015743.1); similar to Os02g0762300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048203.1); contains InterPro domain PP-loop ATPase, YdaO-related; (InterPro:IPR012089); contains InterPro domain Protein of unknown function UPF0021; (InterPro:IPR000541); contains InterPro domain PP-loop; (InterPro:IPR011063) -0.666790353921759 -6.95149956270645 9.35492868019333e-05 0.613309124273475 8.31321313091438 10.2597908644432 -0.666790353921759 0.0985203897270921
AT2G35800_at 8.26265960289637 8.35293737443908 8.09365324230375 7.82196286330072 8.26883867698277 8.03913401792584 9.3241022270215 9.17034893441977 8.96527436032747 9.13284499724325 8.50810088225348 8.50237532052673 8.81972035632834 8.65794244903924 8.51225635707026 8.84322783114489 8.85376996915482 8.36778120662184 9.0800095636138 0.108124847899154 0.103872238073001 0.121263428962644 0.114762066521336 0.105054063081143 0.119271760945195 0.109321558947966 0.103872238073001 0.116145501510264 0.105730231880441 0.107216351513366 0.105601867515508 0.103872238073001 0.104078106990327 0.110321387128935 0.104548092019748 0.110356968803981 0.108045970890779 0.105864290729731 2 2 + 15054778 15055390 15055044 15051124 15055682 + gene protein_coding_gene FALSE TRUE AT2G35800.1 mitochondrial substrate carrier family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G26360.1); similar to Mitochondrial carrier protein, putative [Medicago truncatula] (GB:ABE77885.1); similar to Os12g0103000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065240.1); similar to Os11g0103700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065524.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.573922172554988 -6.94098348788663 9.4584711305295e-05 0.620002782606208 8.30483248368967 17.2629661692007 -0.573922172554988 0.0688683734664373
AT1G69360_at 5.73858992305876 5.74581275419044 5.98994784367904 6.17343739088802 6.68299503830422 6.92034964055363 5.26589045657198 4.98128820267187 4.80864833775175 5.3150705369088 5.01133369421691 4.84125138588735 5.13156762527908 5.18578888554819 4.71451114364951 5.76650879284249 5.43797749406028 4.84192443127934 4.76445740888871 0.239271063665421 0.236445027767372 0.233696864355742 0.233208333341253 0.234823818946718 0.239492041395133 0.237529049512925 0.237993779311684 0.240599228988252 0.240652678494307 0.234121478070773 0.233208333341253 0.241716014939282 0.233847287553393 0.237306959734226 0.233208333341253 0.246883895919473 0.233632202232479 0.241015933765363 1 1 - 26076185 26076704 26076452.091 26075947 26079917 - gene protein_coding_gene FALSE TRUE AT1G69360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26620.1); similar to Os03g0758600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051334.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK16179.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98981.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) 0.581209823989303 6.93791736367375 9.48889764451503e-05 0.621902351621515 8.3023860389556 10.9768305859623 0.581209823989303 0.0715735832687905
AT4G28490_at 8.49290435306428 8.87588314868241 9.5593687558499 9.63427929047043 8.89665524229958 8.16595639149368 6.7349901214008 6.92948402844647 7.79586449939785 6.30291720512612 7.47627299577452 8.17737471137971 7.16018917855926 7.70006761679189 6.45680955814117 7.99213496725197 7.07901000823454 7.81165289666708 7.18267030534533 0.219927104799904 0.221782463007178 0.226403830258623 0.221536339228429 0.218811372687998 0.217656287095880 0.210150596439843 0.219062879926246 0.233525025025538 0.21591554262015 0.216630416245324 0.210150596439843 0.221677377232930 0.226116703727301 0.228324763575144 0.212673990222011 0.224998319633535 0.23010821715919 0.215057423885236 4 4 + 14080300 14080934 14080626.091 14077863 14081177 + gene protein_coding_gene FALSE TRUE AT4G28490.1 HAESA (RECEPTOR-LIKE PROTEIN KINASE 5); ATP binding / kinase/ protein serine/threonine kinase member of Receptor kinase-like protein family Identical to Receptor-like protein kinase 5 precursor (EC 2.7.11.1) (RLK5) [Arabidopsis Thaliana] (GB:P47735); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G25930.1); similar to HSL2 (HAESA-LIKE 2), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65710.1); similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28308.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28307.1); similar to leucine-rich receptor-like protein kinase [Malus x domestica] (GB:AAC36318.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.84681058105341 6.93628051566664 9.50518492491674e-05 0.622874768129794 8.30107946289133 15.698943330575 0.84681058105341 0.147252439851194
AT2G14560_at 12.2650090244212 12.1662339784372 12.4254084158804 12.2367205136852 11.6899353979802 10.9105736041073 8.16436202779513 7.38914731782215 10.6307607782571 5.92435311580252 7.87772419666101 9.35963772326367 6.31050831197658 9.1497304448331 4.294364963077 8.18418882316186 9.02424559893421 9.983389439292 6.74614568099068 0.229287816706316 0.227070626129243 0.228865336760197 0.227813011854 0.226578142451411 0.232627096210021 0.227112468334341 0.234402103344184 0.223737746735605 0.254272308944902 0.225151759812085 0.223737746735605 0.256444143820820 0.226497977045201 0.239296148961083 0.227308146287309 0.227870454006246 0.223737746735605 0.244036590864827 2 2|0 +|/ 6221256 6222123 6221615.8 6221054 6222983 + gene protein_coding_gene FALSE TRUE AT2G14560.1|AT2G14560.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33840.1); similar to Protein of unknown function DUF567 [Medicago truncatula] (GB:ABE88873.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 1.03767927921377 6.92415992548348 9.62675177822638e-05 0.630744776509392 8.29139269886483 18.8009538913495 1.03767927921377 0.193768858586164
AT1G23180_at 6.0673254978438 6.21958367289371 5.90679227535035 5.97271684061699 6.04129458980541 5.99919447443589 7.02485201235202 6.63101851075037 6.7496491493406 7.04705486852014 6.12574830674479 6.19545155156089 5.88419483892423 5.88594564610872 6.56484515497849 5.8486528069121 6.08090393051231 6.48227816672027 6.60661688237361 0.202129200934891 0.196150449723671 0.200766414433731 0.202563171181462 0.207013956635821 0.209814190031776 0.209197329561993 0.199438967856232 0.209103600406677 0.196150449723671 0.198688828450646 0.199454305579965 0.198088066703793 0.213253376237830 0.200189280496142 0.204003857923045 0.225546319730499 0.207223436960234 0.196150449723671 1 1 + 8218924 8219464 8219109.364 8215710 8219573 + gene protein_coding_gene FALSE TRUE AT1G23180.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44900.1); similar to hypothetical protein CIMG_09351 [Coccidioides immitis RS] (GB:XP_001239730.1); similar to hypothetical protein Tb10.61.2450 [Trypanosoma brucei TREU927] (GB:XP_827912.1); similar to Os01g0524700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043222.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.586649897422436 -6.9097527132567 9.77348458368485e-05 0.640260975077194 8.2798514179111 12.7001519927823 -0.586649897422436 0.0743140022808672
AT1G20840_at 6.62446506885145 7.25548898258178 5.50277830446703 6.16735611039148 6.70418136178546 6.41284053758125 3.47172117314736 4.47889085160841 3.78725746651011 3.71511706499844 5.81219063736531 6.30002786308699 5.71693062988488 5.73882504505837 5.4999055061443 5.10364552278327 4.47464745681302 5.12305395450248 3.68613578094642 0.27522087583852 0.269179624564444 0.289942563158557 0.266572388181372 0.264176133771107 0.293754714294711 0.279563187231914 0.267948703973462 0.275045085132911 0.264176133771107 0.264176133771107 0.264472391585232 0.264791767958802 0.271709521841540 0.276995985087007 0.264176133771107 0.284035705589154 0.27424778471667 0.271577196184065 1 1 - 7245133 7245731 7245422.727 7244928 7248132 - gene protein_coding_gene FALSE TRUE AT1G20840.1 TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1); carbohydrate transporter/ nucleoside transporter/ sugar porter The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues. Identical to Monosaccharide-sensing protein 1 (Sugar transporter MSSP1) (Sugar transporter MT1) (Monosaccharide transporter 1) (MSSP1) [Arabidopsis Thaliana] (GB:Q96290;GB:Q9LM67;GB:Q9SYQ3); similar to TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT4G35300.1); similar to TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G51490.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE83235.1); similar to hexose transporter 6 [Vitis vinifera] (GB:AAX47312.1); similar to putative hexose transporter [Vitis vinifera] (GB:AAY40466.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 1.24039872448945 6.90877955452654 9.78348429909485e-05 0.640818221590713 8.27907078217077 10.4275436810217 1.24039872448945 0.240982896091884
AT2G16710_at 9.29585958995233 9.42088478352153 9.5206729989749 9.63963443605034 10.1657671666290 9.28845850603941 8.26816979499768 8.11960392730042 7.76242482205334 7.86188702049199 8.8146165298996 8.52455031194246 8.5585400945764 8.6995795886219 8.3446324111889 8.67249249852203 8.44327401557306 8.8380207322624 7.5547483254469 0.171424693205440 0.167264553307227 0.168486041303506 0.16549595519925 0.173223694510434 0.172396950393023 0.168485256755164 0.168748222230747 0.221937203262643 0.18258554897654 0.172739431355858 0.164736281371636 0.167160021419635 0.182525349757362 0.169452956030156 0.168705695055444 0.179294293035431 0.175867098537837 0.178623466098354 2 2|0 +|/ 7255380 7257056 7256068.3 7255222 7257373 + gene protein_coding_gene FALSE TRUE AT2G16710.1|AT2G16710.2 hesB-like domain-containing protein Identical to Iron-sulfur assembly protein IscA-like 1, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q8LBM4;GB:Q9SLE6); similar to iron-sulfur cluster assembly complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G36260.1); similar to Os12g0485500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066782.1); similar to IscA -like [Oryza sativa (japonica cultivar-group)] (GB:BAD44876.1); contains InterPro domain HesB/YadR/YfhF; (InterPro:IPR000361) 0.881556818236508 6.90594148153702 9.81271136365707e-05 0.642634467205901 8.27679340634145 17.3840397315102 0.881556818236508 0.156853355027127
AT3G47860_at 10.1325789863008 10.1369773226617 9.3153058689665 9.23291702627456 9.92816927097217 9.65593640347662 8.71441983473161 8.57744623857743 8.10757513395468 8.77633470970652 9.85233086426258 9.78745184614368 8.7851591438313 9.3843766368439 9.56937658276114 7.75153576018623 8.7753513488543 9.63642682147863 7.91582373629394 0.11693752089539 0.115443303971403 0.121137811181956 0.111511647139676 0.116204976421258 0.119998911532103 0.113623119214677 0.11877547431678 0.139224341225744 0.114051124388432 0.118394483080446 0.116150732851935 0.117428316392665 0.115543078895953 0.116317220571547 0.123149584625836 0.125378946364387 0.121058248862485 0.120904161007464 3 3 - 17667766 17668339 17668029.636 17667655 17669301 - gene protein_coding_gene FALSE TRUE AT3G47860.1 apolipoprotein D-related similar to chloroplast lipocalin [Glycine max] (GB:ABB02412.1); contains InterPro domain Lipocalin-related protein and Bos/Can/Equ allergen; (InterPro:IPR000566); contains InterPro domain Lipocalin; (InterPro:IPR002345); contains InterPro domain Calycin-like; (InterPro:IPR011038); contains InterPro domain Calycin; (InterPro:IPR012674) 0.53444990620737 6.89976261171072 9.87667564698984e-05 0.646724721364895 8.2718312944336 18.1913833617603 0.53444990620737 0.0546369962022521
AT1G31650_at 6.01248986927786 5.74538833991251 5.08727401082519 5.06556502212721 5.44518228338725 5.48961217261982 6.38411859928654 6.58499026381058 5.75681726932455 6.33558477428269 5.8331985469563 6.31285014085911 6.33500294073691 6.14392245301018 5.67040559222465 6.12789248612659 6.3566480056628 5.77221751022343 6.64575020311713 0.246284889299777 0.239718559147262 0.253554399283867 0.238407601827374 0.234809307962053 0.247818556102835 0.249255299607155 0.245615622304574 0.248380814235353 0.25799339390096 0.24854954943125 0.237471501986305 0.251893832332653 0.264311339608598 0.251463059289918 0.240108790794646 0.248104528518082 0.240556481219511 0.243851905137421 1 1 - 11326606 11327026 11326850.778 11326282 11330719 - gene protein_coding_gene FALSE TRUE AT1G31650.1 ATROPGEF14/ROPGEF14 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. similar to ATROPGEF7/ROPGEF7 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT5G02010.1); similar to Os05g0454200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055718.1); similar to Os02g0702600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047852.1); similar to pollen-specific kinase partner protein [Lycopersicon esculentum] (GB:AAW57535.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.543435967632566 -6.89823508333319 9.8925594451841e-05 0.647665866876203 8.27060373430337 11.8843615493474 -0.543435967632566 0.0584653209225817
AT4G29060_at 10.1615136995248 10.2007071256903 9.61512402055687 9.72358187931273 9.91720640821645 9.71524904759505 10.6571371497876 10.5828741931433 10.3033491347083 10.6822016803744 10.0042207652385 10.5930612388217 9.88721247236146 9.74491881939936 10.7857122880358 10.2320916905987 9.92816651827778 10.0210320179618 10.5375319969819 0.104323712859998 0.102291520164686 0.107040262624484 0.105907862427179 0.103618241017068 0.111542494381769 0.106321187852488 0.104690959650241 0.109552972791011 0.105480717661717 0.112519308534492 0.106498874938571 0.103725954517998 0.107203793119555 0.106012626743579 0.107145747838494 0.115111298090203 0.106143273837643 0.103866524385814 4 4 + 14320648 14321246 14320927.273 14317262 14321573 + gene protein_coding_gene FALSE TRUE AT4G29060.1|AT4G29060.2 EMB2726 (EMBRYO DEFECTIVE 2726); translation elongation factor similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1); similar to chloroplast polyprotein of elongation factor Ts precursor [Chlamydomonas reinhardtii] (GB:AAU93598.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|similar to translation elongation factor Ts (EF-Ts), putative [Arabidopsis thaliana] (TAIR:AT4G11120.1); similar to Os12g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066956.1); similar to translation elongation factor Ts [Prochlorococcus marinus str. MIT 9312] (GB:YP_397258.1); similar to elongation factor Ts [Prochlorococcus marinus subsp. pastoris str. CCMP1986] (GB:NP_892872.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.507954998733769 -6.8943417571093 9.93317099478492e-05 0.65022537331862 8.2674734592754 20.4002973139909 -0.507954998733769 0.0422483798758945
AT3G28270_at 7.94429560419045 8.25516530319187 10.8154074899576 10.9943153065279 10.0017607856033 9.63705393258539 10.5414589651196 10.6980385472012 7.45312714230836 9.08117121597419 7.43103508324266 6.80928428565481 9.0221745849732 8.56044307727316 6.30517522316622 10.0608334490934 10.2411604593659 8.27524599626232 7.63958572947695 0.206424962272521 0.195423986766589 0.201706121684600 0.204564203633786 0.205737094985991 0.208938430792033 0.211591023536453 0.199345678510406 0.203190178693944 0.198262395495520 0.203283914345757 0.206544770388468 0.196872908628050 0.197105273898615 0.211695352238078 0.196457710600292 0.196657159378370 0.199942374224633 0.201264886370723 3 3 + 10540593 10541047 10540755.273 10539342 10541261 + gene protein_coding_gene FALSE TRUE AT3G28270.1|AT3G28270.2 similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28290.1); similar to AT14A [Arabidopsis thaliana] (TAIR:AT3G28300.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE78510.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) 0.641301215517625 6.89142264605734 9.9637408286793e-05 0.65212683723706 8.26512504903634 18.0590021830299 0.641301215517625 0.0925763571895707
AT2G46490_at 9.09566362669096 9.00695847320093 8.84249245669875 8.93330363549769 9.76054933743437 9.3799106506365 8.04986036087001 8.20383374574558 8.86931048151937 8.48819314475617 9.90815320347791 9.18689888395927 9.17718857938186 9.56455226758545 9.15472059960948 9.27671408469447 9.13019704118008 9.16136434689436 9.01332930503431 0.145001221020049 0.145603728140127 0.152370803847674 0.148403995577476 0.145001221020049 0.158148349207710 0.162346349127921 0.165618990104205 0.163736592692851 0.157430545445666 0.145001221020049 0.150751438374293 0.151205069667573 0.150485754950942 0.154037240352571 0.145001221020049 0.165387571829015 0.151680284776435 0.148273776634836 2 2 + 19086544 19086846 19086665.455 19086478 19087125 + gene protein_coding_gene FALSE TRUE AT2G46490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G35110.1) 0.584840475258934 6.88637656242466 0.000100168295159662 0.655501323524826 8.2610626393599 17.9641971706558 0.584840475258934 0.0743750386424899
AT4G28080_at 10.5451107425164 10.5484569008024 10.0619907575588 10.1968871153573 10.3745622227838 10.1720265942205 11.2473447391518 11.1750820012784 11.1862309787476 11.147488742363 10.6758559880024 10.9957922011460 10.7952222296666 10.7495156794256 11.0279186916433 10.9575515325255 10.5590650065179 10.8078060622972 11.1598545639674 0.0632183160050621 0.0617835486755736 0.0655353565003738 0.0643100150036954 0.0641950371140236 0.0687801421380279 0.0629810858940442 0.0634266086605225 0.0699483782541751 0.0630033843107283 0.0622500860714484 0.0628192202417309 0.0625547620908469 0.0632710004094721 0.0647578879780677 0.0617170624934337 0.0693922641738157 0.0658123648879896 0.0617170624934337 4 4 - 13949232 13949571 13949400.091 13948609 13957424 - gene protein_coding_gene FALSE TRUE AT4G28080.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G15290.1); similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT1G01320.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to H0811D08.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86110.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.510532880623377 -6.88560051496376 0.000100250217237567 0.6559371713854 8.2604375513829 21.5329904770066 -0.510532880623377 0.0439336708507608
AT3G26740_at 13.2447956327758 13.2608371188984 13.4803416519704 13.3721403093859 13.5924560788539 13.5694245744133 12.3157485153107 12.2919485043033 12.3791134926782 12.2484063599785 12.4481866418508 12.3060410471609 12.9082197457403 12.6600375828693 12.0985204134647 12.5434957453298 13.0319394214019 12.3329485756455 12.3228696228325 0.0676175514447028 0.0691119812408298 0.0663912188990226 0.0678272820815824 0.0714127034351976 0.0685550795906314 0.067011176458942 0.0692081160876648 0.0718075815301821 0.0675921382721495 0.0693747043706894 0.0684753326210824 0.071706158660076 0.0673828227722876 0.0689092532896869 0.0687170786598728 0.0685080314514152 0.0658932949217803 0.0651943176121822 3 3 + 9829109 9829636 9829368.818 9829039 9829917 + gene protein_coding_gene FALSE TRUE AT3G26740.1 CCL (CCR-LIKE) transcripts are differentially regulated at the level of mRNA stability at different times of day controlled by the circadian clock. mRNAs are targets of the mRNA degradation pathway mediated by the downstream (DST) instability determinant. similar to light regulated protein-like protein [Thellun (GB:AAM19704.1); contains InterPro domain Light regulated Lir1; (InterPro:IPR009856) 0.474817682843521 6.87884321700715 0.000100966664443469 0.660523918789176 8.25499107940793 25.5699466174953 0.474817682843521 0.0197780741362309
AT3G01060_at 10.7376840736218 10.6925058839824 10.3854048210897 10.3896704327591 10.1840560406321 9.9285501830016 11.7402139453345 11.3829350024820 11.1309848159119 11.2654848088160 10.8792876389811 11.0580758473467 10.8953752563434 10.9861218835150 10.6537537904798 11.2808003755815 11.0706358339238 10.6358949770024 11.1911674031866 0.0904078231629831 0.0891221196350884 0.0925466726960504 0.0917734559776503 0.088188270312854 0.0957919416417787 0.0879720086568587 0.0885353173094908 0.0951741458180212 0.0871030829403845 0.0871030829403845 0.0871030829403845 0.0884739784880114 0.0880674226633211 0.0902082972162158 0.0871712770892261 0.088733011060993 0.089707805252957 0.0871030829403845 3 3 - 16870 17520 17143.364 16650 18847 - gene protein_coding_gene FALSE TRUE AT3G01060.1|AT3G01060.2|AT3G01060.3 similar to unknown [Brassica rapa] (GB:ABC41272.1) -0.589900082946322 -6.87640116393501 0.000101226969730085 0.662125609004488 8.2530211504314 21.7443136527137 -0.589900082946322 0.076417057966669
AT3G49010_at 11.1341345788671 11.2466453008084 10.6903851362163 10.6365225565283 10.3863915486210 10.2917487468971 11.0163108760030 11.2623147953949 10.3453290396347 10.5250857239536 10.0681856789586 10.4440153764782 9.86261345881797 9.83731080921506 10.7369633424573 9.76574885211213 9.62722210920892 9.90371946249848 10.3706367529287 0.091635878704475 0.0906967388785144 0.0911265036775385 0.08547459067173 0.0884503787983868 0.0938183908386257 0.0912066878772491 0.08547459067173 0.105054333177339 0.0890259550630638 0.089208238278066 0.0868891211386175 0.0910671788073666 0.0959269606771025 0.088730878557692 0.0871004045654186 0.0953294773377157 0.0879860196183987 0.085614165492995 3 3|0 -|/ 18177992 18178749 18178248.5 18177754 18179677 - gene protein_coding_gene FALSE TRUE AT3G49010.1|AT3G49010.2|AT3G49010.3|AT3G49010.4|AT3G49010.5 ATBBC1 (breast basic conserved 1); structural constituent of ribosome|ATBBC1 (breast basic conserved 1) Encodes 60S ribosomal protein L13. Homolog of human breast basic conserved 1 (BBC1). Identical to 60S ribosomal protein L13-1 (Protein BBC1 homolog) (RPL13B) [Arabidopsis Thaliana] (GB:P41127;GB:Q42280;GB:Q8LFC4); similar to 60S ribosomal protein L13 (RPL13D) [Arabidopsis thaliana] (TAIR:AT5G23900.1); similar to 60S ribosomal protein L13-1 (Cold-induced protein C24A) (GB:P41128); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380)|Identical to 60S ribosomal protein L13-1 (Protein BBC1 homolog) (RPL13B) [Arabidopsis Thaliana] (GB:P41127;GB:Q42280;GB:Q8LFC4); similar to 60S ribosomal protein L13 (RPL13D) [Arabidopsis thaliana] (TAIR:AT5G23900.1); similar to 60S ribosomal protein L13-2 (Cold-induced protein C24B) (GB:P41129); contains InterPro domain Ribosomal protein L13e; (InterPro:IPR001380) -0.523275421661669 -6.8762458404034 0.000101243551069379 0.662132823993736 8.25289582694444 21.0552598049457 -0.523275421661669 0.0504640658466717
AT1G07135_at 8.12927164981188 7.45642147505969 8.16557807217078 7.93379625043337 8.02157437503185 7.87736177835723 5.23195226695869 5.92586439738807 7.99533387273076 6.42787183231653 7.81865173922537 7.93036387586562 7.46184229564462 8.41809577583404 8.03126123951374 6.72726914747888 6.89856990294256 8.4788359438045 7.00280696496798 0.270598630235717 0.270598630235717 0.270598630235717 0.292495832601895 0.270598630235717 0.307399022498753 0.298326104752765 0.311422008521301 0.270598630235717 0.280875074101684 0.270598630235717 0.270598630235717 0.270598630235717 0.292088897196925 0.290160206932425 0.290128817646173 0.282800389633905 0.270598630235717 0.270598630235717 1 1 - 2190184 2190371 2190295.75 2189927 2190658 - gene protein_coding_gene FALSE TRUE AT1G07135.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT3G04640.2); similar to RH06401p [Drosophila melanogaster] (GB:AAM29562.1) 0.946153594196982 6.87037591851293 0.000101872382816968 0.666143511240154 8.24815712998665 14.77403526484 0.946153594196982 0.173811118716863
AT3G18130_at 6.01777128810776 6.80259654402949 5.16927477487538 5.03130888721769 4.51655145433571 4.39134746110184 7.54413757413662 7.36352923864018 4.5031588945737 4.76715868599708 4.96274207042954 6.3146759984605 4.65677143755347 4.43182608711008 6.90699394944208 4.31336679172668 4.21133171840888 4.73848082861603 4.39668868329322 0.264189092932970 0.266107101444642 0.259119955210275 0.263074643431696 0.259119955210275 0.259119955210275 0.265175424323019 0.269446705608288 0.260522842603079 0.259119955210275 0.264257354546186 0.268596124278220 0.265406264150006 0.272259397754389 0.273781709899869 0.261794352282116 0.271794028840024 0.2658237504671 0.262267644810231 3 3 - 6211121 6211821 6211633.818 6210910 6212439 - gene protein_coding_gene FALSE TRUE AT3G18130.1 guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.82176658062439 -6.86635475575568 0.000102305641930840 0.668874286943834 8.24490806736343 10.6659108352255 -0.82176658062439 0.143048358405437
AT3G02630_at 8.20596960713059 8.49140485729414 8.16126733407015 8.1733561234352 8.51293854354284 8.3000914035554 8.20325780522274 8.02963797738191 7.22419826910364 7.47892655413207 8.57813517259043 8.62585551048166 8.25880598134049 8.28782774751086 8.8041375040775 8.03761036587995 8.11456374872811 8.51558362896998 7.26696810475457 0.140681662887242 0.136970203985594 0.139971684063226 0.144595307696688 0.139174513755486 0.143947438094459 0.141761213899236 0.13334107032528 0.147143866657398 0.145173010061214 0.143063990918799 0.136118476601675 0.132920524452796 0.146159462101337 0.137212232527877 0.135264029598652 0.143075305166869 0.136994595412265 0.145404888905012 3 3 + 563360 564411 563997.909 562038 564877 + gene protein_coding_gene FALSE TRUE AT3G02630.1 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT5G16240.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:Q41319); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) 0.566898218755415 6.8653720159275 0.000102411835105845 0.669466166086906 8.24411367121767 16.1228300898429 0.566898218755415 0.0685845065065028
AT1G03950_at 7.61929362059125 7.60507178867548 8.03045262947868 7.97961380838435 8.10507179308303 7.8822583593058 7.71215672829448 7.48760472337218 6.68652404629659 6.46431576911578 6.85419435438607 6.93760413797783 7.12400274712658 7.3182740736937 6.87289013125631 7.45573428487932 7.51292846358051 7.07797159500694 6.26025277309042 0.155899261887368 0.157429369812774 0.159662922158464 0.156863662006321 0.159272849899955 0.165258584208282 0.160743811364225 0.154993458033299 0.176717417843687 0.165376794147282 0.159303226704228 0.161359148836637 0.161679499567147 0.167988812208032 0.170539200954745 0.154993458033299 0.166943470123262 0.16264545481827 0.163052702579161 1 1|0 -|/ 1011395 1012645 1012154.875 1011171 1013364 - gene protein_coding_gene FALSE TRUE AT1G03950.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G44560.1); similar to Os10g0476400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064848.1); similar to BRI1-KD interacting protein 109 [Oryza sativa (japonica cultivar-group)] (GB:BAD11337.1); similar to Os03g0639800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050739.1); contains InterPro domain Snf7; (InterPro:IPR005024); contains InterPro domain Putative DNA binding; (InterPro:IPR009061) 0.533576604825215 6.8626279869949 0.000102708993029858 0.671305978443155 8.24189480884547 14.6099725162262 0.533576604825215 0.0555007312105679
AT4G21180_at 6.9920533852455 6.98946055371903 7.02894776506168 6.54203054126452 6.44008120460333 6.11118516889759 7.4174582362411 7.24620453518901 6.880981100313 6.63569396885263 5.74188549744808 6.64284199593372 5.80456088775664 5.45921574883285 6.1949848383784 6.25607323414617 5.91496868278068 5.51552150034925 6.5093400758042 0.185839414207818 0.19024780006462 0.184094853374164 0.18556927569994 0.192946516449592 0.192852670774542 0.189377140540278 0.182260874279326 0.192296727917639 0.192315525661679 0.189709365447617 0.184396464651207 0.191563630895243 0.185524130477873 0.182870023045929 0.181623263055182 0.190167194522791 0.188138807326220 0.181623263055182 4 4 + 11291623 11291954 11291796.636 11288939 11292399 + gene protein_coding_gene FALSE TRUE AT4G21180.1 DNAJ heat shock N-terminal domain-containing protein / sec63 domain-containing protein similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G79940.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL53183.1); similar to Os04g0307200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052421.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Sec63; (InterPro:IPR004179); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.682407420547634 -6.8512514687338 0.000103951148663874 0.679320756518418 8.23268409456519 13.1542251387076 -0.682407420547634 0.105916740682041
AT4G27840_at 4.5534015362544 5.1593111704417 4.34255633396929 4.57032989559974 4.30897938902226 3.9044044112303 5.9530583452012 6.08082714647353 4.865267409762 5.04497953525305 4.79757134370239 4.73191651178407 4.25502949284994 4.30624003910906 4.60005141500702 4.33240281211976 4.20845000973428 4.49518222718870 4.72887317043869 0.211852642143407 0.205679570924913 0.218845993653618 0.214171159297107 0.213915857965962 0.225834776878584 0.210473294183245 0.20914484467678 0.218341635331967 0.213422555136158 0.213122288220856 0.206938279094519 0.210387455921510 0.219749802979177 0.206672430930166 0.208624671061858 0.212127290056131 0.218079583715433 0.206630308097897 4 4 - 13865331 13865843 13865687.545 13865051 13866293 - gene protein_coding_gene FALSE TRUE AT4G27840.1 similar to vesicle-associated membrane protein-related [Arabidopsis thaliana] (TAIR:AT5G52990.1); similar to Os08g0558600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062495.1); similar to Os08g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060818.1); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) -0.784466632925829 -6.84829783946166 0.000104276340562900 0.681341609237991 8.23028973111527 9.53188962181813 -0.784466632925829 0.133937273324262
AT3G15030_at 6.92891456751798 7.02952806688494 5.72922647331549 5.66283746998617 6.33509806069586 6.21825309065326 7.05719173394284 7.11380168159839 6.50600793449628 6.17394304294015 6.34027115168057 6.79357923945947 6.88458529988342 6.20935352614069 6.54745430339473 6.57276819638953 6.23690957307322 5.85517893814385 6.38277340973504 0.189969057857932 0.184762478476991 0.191911913634034 0.199361613303402 0.185804701890231 0.189928341316110 0.185698231507565 0.185927882949518 0.191847942470471 0.184608541177024 0.186592193737243 0.184619993297891 0.180845504604896 0.182237954940295 0.185925814120146 0.185264611758973 0.196191677386048 0.192733904902228 0.185012058597405 3 3 + 5063119 5063512 5063311.273 5062026 5064122 + gene protein_coding_gene FALSE TRUE AT3G15030.1|AT3G15030.2 TCP4 (TCP family transcription factor 4, maternal effect embryo arrest 35); transcription factor Arabidopsis thaliana TCP family transcription factor similar to TCP3 (TCP family transcription factor 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G53230.1); similar to mutant cincinnata [Antirrhinum majus] (GB:AAO43102.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.485117086346575 -6.842868263492 0.000104877056728625 0.685161811608108 8.22588497488224 12.9014833885300 -0.485117086346575 0.0306595088728714
AT1G29880_at 8.35643955561315 8.42838181152848 8.30828634981462 8.39498253119883 8.4526223994981 8.02364601172682 8.93605147426015 8.77375673514176 9.03544154083288 9.14395815584025 8.20015289349864 8.14077777216279 7.91642540332197 7.9047583113826 8.45644120901413 8.41508771579433 8.19648487944461 8.25408955322276 9.00747758909911 0.164648308246169 0.164647479235431 0.173460693560027 0.174402641979102 0.160813521136387 0.167820034958174 0.174192867809713 0.164253002063737 0.170841323177516 0.163328371666156 0.166518952524818 0.164884804413232 0.162483911731825 0.172370883693985 0.168842514012295 0.169733209558500 0.184718162433800 0.179771326241896 0.162652879636969 1 1 - 10459681 10460215 10459955.273 10459462 10462785 - gene protein_coding_gene FALSE TRUE AT1G29880.1 glycyl-tRNA synthetase / glycine--tRNA ligase Identical to Glycyl-tRNA synthetase 1, mitochondrial precursor (EC 6.1.1.14) (Glycine--tRNA ligase 1) (GlyRS 1) (GLYRS-1) [Arabidopsis Thaliana] (GB:O23627;GB:Q8LBY0;GB:Q949T7); similar to tRNA synthetase class II (G, H, P and S) family protein [Arabidopsis thaliana] (TAIR:AT1G29870.1); similar to PREDICTED: similar to glycyl-tRNA synthetase [Rattus norve (GB:XP_001061006.1); similar to Glycyl-tRNA synthetase [Mus musculus] (GB:AAH21747.1); similar to H0209H04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66534.1); contains InterPro domain WHEP-TRS; (InterPro:IPR000738); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain Glycyl-tRNA synthetase, alpha2 dimer; (InterPro:IPR002315) -0.602769141218404 -6.84281165333546 0.00010488333997759 0.685161811608108 8.22583902748304 17.0831806815082 -0.602769141218404 0.0817309603868619
AT1G78970_at 3.11216650936464 4.11221662186058 2.40999731076477 2.83213642049837 2.87824193594282 3.11259195834643 4.65372926834928 4.40212928577055 2.27970284572648 4.38359402780043 7.87489578120123 7.41868449903768 7.26640674251324 8.56525742467509 8.23036579446348 8.0079090249724 7.18972306887641 8.41047373289512 6.92955870794234 0.245195396889012 0.246788760043499 0.250876081155736 0.248672478766607 0.248472376139106 0.248978642262745 0.251309955504082 0.245004898668065 0.254676873050313 0.239191669828380 0.24170772608664 0.243976157157009 0.2455840776349 0.243371498883788 0.244462265346859 0.248263436257954 0.262106546172680 0.242789766951135 0.239191669828380 1 1|0 +|/ 29711521 29712550 29712030.889 29707955 29712737 + gene protein_coding_gene FALSE TRUE AT1G78970.1|AT1G78970.2 LUP1 (LUPEOL SYNTHASE 1); lupeol synthase Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. similar to ATLUP2 (Arabidopsis thaliana lupeol synthase 2), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78960.1); similar to lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative [Arabidopsis thaliana] (TAIR:AT1G66960.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to pentacyclic triterpene synthase [synthetic construct] (GB:AAG41762.1); similar to beta-amyrin synthase [Medicago truncatula] (GB:CAD23247.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 1.03884706657071 6.83962346411187 0.000105237871592542 0.687308539370895 8.22325060450192 9.63985934839672 1.03884706657071 0.197048717052858
AT3G19490_at 9.46409159541546 9.48929016677886 9.44195900450098 9.38110327243892 9.37379237958262 9.41209773853907 8.7709278919596 8.61579132184198 8.21594292708855 8.36563440388041 8.67025300275184 8.52031418657753 8.71288550686412 8.83117611962704 8.9623094554281 8.76370925939626 9.07056614017062 8.93840855470623 7.89477440660851 0.124099581515082 0.126207558803924 0.122797688208866 0.126853577553205 0.123272794140068 0.124081468697050 0.126348803374593 0.121988410941356 0.141497684319577 0.130691404259716 0.128056193837230 0.122790874575948 0.126857914828379 0.120251516624253 0.127140521372615 0.121625108337559 0.132264261934922 0.129313768351015 0.140985148149608 3 3 - 6754895 6755672 6755275.909 6754621 6758267 - gene protein_coding_gene FALSE TRUE AT3G19490.1 ATNHD1 (Arabidopsis thaliana Na/H antiporter 1); sodium:hydrogen antiporter member of Na+/H+ antiporter-Putative family similar to ATNHD2 (Arabidopsis thaliana Na/H antiporter 2), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G49810.1); similar to Na+/H+ antiporter precursor [Populus euphratica] (GB:CAD91128.1); similar to putative Na+/H+ antiporter precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD17583.1); similar to Os09g0109800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062568.1); contains InterPro domain Citrate transporter; (InterPro:IPR004680) 0.483565860215407 6.83569659022877 0.000105676359918371 0.690066630266962 8.22006045329052 17.7273750167402 0.483565860215407 0.029910456923558
AT4G25740_at 8.4489733852878 8.5363666499404 7.67204405706743 7.64606228507792 8.15628860975439 8.05773565998963 8.87071998765198 8.82627945091644 8.00149162552363 8.07022580791399 7.74603964408574 8.41672580515822 7.80387770439132 7.92527890671805 8.80683726065517 7.66255163459077 7.75606798334846 7.77621314693936 8.38542182678108 0.158140449281531 0.150344686923361 0.162971263818973 0.160018590871873 0.152812636979678 0.159369349273621 0.154313216277986 0.156592219267539 0.158479301412603 0.159436650095830 0.152109945666066 0.148647033368230 0.153213735175113 0.157039924622717 0.151302324260538 0.151350172590296 0.159862816733648 0.1582664393892 0.154641865527088 4 4|0 -|/ 13107510 13108160 13107796.222 13107259 13108836 - gene protein_coding_gene FALSE TRUE AT4G25740.1|AT4G25740.2 40S ribosomal protein S10 (RPS10A)|structural constituent of ribosome Identical to 40S ribosomal protein S10-1 (RPS10A) [Arabidopsis Thaliana] (GB:Q9SW09); similar to 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana] (TAIR:AT5G52650.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55361.1); contains InterPro domain Plectin/S10, N-terminal; (InterPro:IPR005326); contains InterPro domain Fe-only hydrogenase, small subunit; (InterPro:IPR008953)|Identical to 40S ribosomal protein S10-1 (RPS10A) [Arabidopsis Thaliana] (GB:Q9SW09); similar to 40S ribosomal protein S10 (RPS10C) [Arabidopsis thaliana] (TAIR:AT5G52650.1); similar to 40S ribosomal protein S10-like [Solanum tuberosum] (GB:ABB55361.1); contains InterPro domain Plectin/S10, N-terminal; (InterPro:IPR005326) -0.476616479073579 -6.83429456114168 0.000105833402110306 0.690986282378189 8.2189209229085 16.3463481427818 -0.476616479073579 0.0244737968157857
AT4G26520_at 6.82291203650216 6.48412303809956 5.92937229686999 5.80934708487601 6.57327866457205 5.9180114589634 8.04273812358906 8.17479482178281 6.83894374674941 7.69081801978808 6.97128878691364 7.22380095364108 7.7837452949513 7.65855188391137 6.73517894873606 7.52274266404163 7.54175511310092 6.70855584936713 7.940598458362 0.224834602427161 0.217567669617640 0.225695682884215 0.217863062254171 0.22106832276791 0.234046129286598 0.220831652007129 0.227010343913166 0.238881933909899 0.219828696689447 0.219312154070863 0.217829259022557 0.218030795603135 0.223610952154588 0.22331282154856 0.221545230969155 0.231731698597758 0.227080783390144 0.221770231516661 4 4 + 13389417 13390154 13389895.818 13388393 13390381 + gene protein_coding_gene FALSE TRUE AT4G26520.1 fructose-bisphosphate aldolase, cytoplasmic Identical to Fructose-bisphosphate aldolase, cytoplasmic isozyme (EC 4.1.2.13) [Arabidopsis Thaliana] (GB:P22197;GB:O65582;GB:Q53YH0); similar to fructose-bisphosphate aldolase [Arabidopsis thaliana] (TAIR:AT4G26530.2); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.77277863340332 -6.83226105774628 0.000106061632735152 0.692370338495071 8.21726764571102 14.0984834465566 -0.77277863340332 0.131339040940085
AT1G06760_at 10.160825405587 10.2411069920766 10.7471544082689 10.8526909564331 11.0016692353393 11.0229596446291 10.3472436774813 10.3343275225753 10.2335033463932 10.1472622898753 10.3138719333708 10.3797172354356 9.99471208678886 10.0181215074783 10.4379109025551 10.4600328337460 10.4015235942551 10.4262254589967 9.58588447462203 0.0759506630569388 0.0744701177307908 0.07610716752497 0.075562475037057 0.077017600491203 0.0779033536931036 0.0755685951386106 0.0766818287301865 0.083045971391299 0.0783764132821167 0.0744701177307908 0.0744701177307908 0.0782826742815997 0.0803325666522609 0.0779379887915397 0.0748718692493116 0.078237508685038 0.0763109372185028 0.0826787487047912 1 1 - 2076818 2077205 2077003.636 2076503 2077697 - gene protein_coding_gene FALSE TRUE AT1G06760.1 histone H1, putative Identical to Histone H1.1 [Arabidopsis Thaliana] (GB:P26568); similar to histone H1.2 [Arabidopsis thaliana] (TAIR:AT2G30620.1); similar to histone H1 [Lathyrus sativus] (GB:AAK29452.1); similar to histone H1 (GB:AAC41651.1); similar to histone H1 [Lathyrus sativus] (GB:AAK29453.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Histone H5; (InterPro:IPR005819); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.475186867759507 6.83182034447182 0.000106111167651657 0.692587591262362 8.21690925900962 20.7349461374864 0.475186867759507 0.0233484058944232
AT4G34220_at 7.95409755906794 8.09893656178761 6.18972674012355 6.52406095951727 7.48106104339787 7.79350226951022 8.21571352690236 8.15273172875209 8.91564243022333 8.38865536708494 8.9491756133379 9.19104922906402 8.65218531867173 8.48463696675928 8.97838708913383 8.65249258078227 7.84534929572262 8.5141542299118 8.99397893765414 0.196718175793917 0.194231095845637 0.238493756145602 0.235561335189570 0.189598593194000 0.204307059116018 0.188340900249979 0.18468165498014 0.193461247118307 0.184216357138567 0.179549924658827 0.191142957700743 0.189066688987609 0.183396836308559 0.179156837595036 0.181100256083642 0.184841689374938 0.193176112066548 0.192699044278811 4 4 - 16381765 16382202 16381972.636 16381510 16384198 - gene protein_coding_gene FALSE TRUE AT4G34220.1 leucine-rich repeat transmembrane protein kinase, putative Identical to Receptor protein kinase-like protein At4g34220 precursor [Arabidopsis Thaliana] (GB:Q94C77;GB:O49483); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G15300.1); similar to Os06g0638500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058153.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os09g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062569.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.607972772777406 -6.83135815647945 0.000106163143617371 0.69282067524696 8.21653337913477 16.2634893163376 -0.607972772777406 0.0837741761879369
AT4G19880_at 9.62432836034247 9.59701528915875 9.88035110440692 9.80337055510259 10.0013526065709 9.86748139558008 8.30404086199975 7.9543420697462 8.70333522856 8.22653246560058 8.58979814007246 8.542172805509 8.28851813026899 8.41288211338271 8.21355306763886 8.24473941720883 8.52489502557264 8.45386044985346 8.00302663007775 0.167204029055964 0.170646981169094 0.174448697569631 0.17551237179875 0.173433790389313 0.17114101971609 0.166185387855888 0.168863073592120 0.171277392473165 0.178223624227652 0.16557079319692 0.167953080548878 0.175916922631975 0.173715646429413 0.167337242367179 0.171268205039092 0.175572183949326 0.176227866052096 0.177172584805344 4 0|4 /|- 10784722 10785334 10784962.778 10784401 10786449 - gene protein_coding_gene FALSE TRUE AT4G19880.1|AT4G19880.2|AT4G19880.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Glutathione S-transferase, C-terminal-like [Medicago truncatula] (GB:ABC75353.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45020.1); similar to Glutathione S-transferase, C-terminal-like [Medicago truncatula] (GB:ABC75353.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.558022444522794 6.83103505081863 0.000106199495533649 0.692951708357061 8.2162705913776 17.7389188645807 0.558022444522794 0.0663236949696663
AT2G39660_at 8.31223381166624 8.64589579920394 8.13683184827024 8.08614390083301 8.47960187656817 8.31604936432039 5.8034880208268 6.05690437642247 6.18565150604886 5.47528367530998 6.13845368252563 5.74730730370976 5.19549563757113 5.74146612789219 5.5457478392981 5.38635413067541 5.91567476879741 5.27913801521513 4.79918569517948 0.237308230048768 0.232158106202566 0.23077270744781 0.229445164232092 0.239521517312464 0.237303144109737 0.236391894695516 0.236236518395143 0.254915837965778 0.238212909551598 0.236267947830336 0.233599454307166 0.232965192008363 0.239115764244066 0.23154096831808 0.229540352863237 0.242849244783582 0.235335062603353 0.233417368840962 2 2|0 +|/ 16539925 16540652 16540337.3 16538766 16541009 + gene protein_coding_gene FALSE TRUE AT2G39660.1 BIK1 (BOTRYTIS-INDUCED KINASE1); kinase Encodes a plasma membrane-localized ser/thr protein kinase that is a crucial component of host response signaling required to activate the resistance responses to Botrytis and A. brassicicola infection. It is likely a negative regulator of salicylic acid accumulation and basal defense against virulent bacterial pathogens. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G55450.1); similar to putative protein kinase APK1A [Trifolium pratense] (GB:BAE71262.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.59101198741629 6.82435058516218 0.000106954631754894 0.697772017568926 8.21083062410884 13.2823494482923 0.59101198741629 0.0783287664358496
AT1G77990_at 6.14978820059921 6.54684199407835 5.70905089053694 5.88913827767214 6.08819833929217 5.49353468629069 7.13476108546011 6.4632388353712 5.65558639775577 5.96074386173744 4.6780000008098 4.33604386637202 4.96889781133798 4.72998114853451 3.33941310489190 5.04598222117561 5.35019114169598 4.62040161177895 5.55725382632168 0.26330622604575 0.268296160144590 0.260428479292595 0.268551509978060 0.263273117032269 0.269056426744841 0.276137782327031 0.267265316314413 0.262274665709940 0.262639465242967 0.271414183374246 0.261566991471111 0.264423656719572 0.267817237345689 0.284961269888245 0.260974278377943 0.273814022231215 0.283613753765578 0.269968508711002 1 1|0 -|/ 29322863 29325732 29324081.571 29322793 29328246 - gene protein_coding_gene FALSE TRUE AT1G77990.1 AST56 (sulphate transporter 2;2); sulfate transporter cDNA encoding a sulfate transporter. Identical to Sulfate transporter 2.2 (AST56) (AtH14) (SULTR2;2) [Arabidopsis Thaliana] (GB:P92946;GB:O64434;GB:Q8LPG2;GB:Q8VXW4;GB:Q9SH01); similar to AST68 (Sulfate transporter 2.1) [Arabidopsis thaliana] (TAIR:AT5G10180.1); similar to plasma membrane sulphate transporter [Brassica oleracea var. acephala] (GB:CAG17931.1); similar to putative low affinity sulfate transporter [Brassica napus] (GB:AAZ08077.2); similar to 4D11_19 [Brassica rapa subsp. pekinensis] (GB:AAZ67533.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -0.934795572854803 -6.82420637097588 0.000106970988442866 0.697772017568926 8.21071318853345 11.3633899846274 -0.934795572854803 0.172591136904591
AT1G13930_at 13.9335700830088 14.0502012540778 14.3464421433033 14.3847983711546 14.1609987578517 14.3444738637643 13.9399901001973 14.0866358740508 13.4532007464335 13.7194378150130 14.3207765710034 14.1594876988549 14.4246567519116 14.2937299952023 14.0793570092367 14.0263672075057 14.4663992125467 14.3237369384646 13.475764199961 0.0562774039283116 0.0548645862251486 0.054043367949546 0.0538693767393342 0.0549103852928373 0.0544039941714607 0.0538477250098704 0.0555885005442326 0.0535791762895978 0.055160442352342 0.0549587850401961 0.054950272012397 0.0540697355480906 0.0540586841113459 0.0548216540170896 0.0543275832161314 0.0576118235423642 0.0546401231304204 0.0558067056762357 1 1 + 4761088 4761496 4761320.273 4761039 4761722 + gene protein_coding_gene FALSE TRUE AT1G13930.1 similar to nodulin-related [Arabidopsis thaliana] (TAIR:AT2G03440.1); similar to drought-induced protein SDi-6 - common sunflower (fragment) (GB:S71562) 0.509462646069858 6.82012275225704 0.000107435294549734 0.700692991053368 8.20738659928857 28.0615295610393 0.509462646069858 0.0458650780943955
AT2G04850_at 5.25066661393797 5.61616687106309 5.27050624528243 5.5401789305329 5.06970442877457 4.94762859617145 7.29076211477913 7.8219471054824 6.13961572684937 6.06573350004635 5.73072159836392 5.7349783593656 5.84616370944866 6.35211994111212 5.43929190577313 6.25636461002745 6.6140612875367 5.68966080575444 6.23786515460004 0.207791057348543 0.207287336670892 0.209013714755858 0.208767842456876 0.208744901996547 0.20681982796914 0.214444476956350 0.209182209964945 0.207350282286182 0.213129625265704 0.215657635776689 0.208352800840373 0.208095105293454 0.20416425694396 0.209068023185393 0.207171272277652 0.220623810652985 0.20416425694396 0.214430597756019 2 2 + 1705058 1705450 1705248.182 1704280 1705775 + gene protein_coding_gene FALSE TRUE AT2G04850.1 auxin-responsive protein-related similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G25290.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN59777.1); similar to Os03g0194300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049250.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.738849488058906 -6.81394826251943 0.000108141549219856 0.705191042462682 8.20235218641596 11.903774315422 -0.738849488058906 0.122780277594387
AT1G61740_at 8.96107622721637 8.83875608334509 9.17698348276207 9.22482505888916 10.0091021730110 9.6124033056105 9.46345138185345 9.15778289102198 9.48337107541074 8.91115817262065 10.2275199658303 9.75580893112858 10.0337990788049 9.8208366723882 9.80395446909368 10.3376379595804 10.0642579452203 9.98053037117774 9.06992927833738 0.140910661853404 0.131972983352898 0.142919651807572 0.137137296550852 0.134561476979211 0.135932167351906 0.132959754897613 0.132838923174393 0.139717699440711 0.150040279089738 0.133602999480435 0.130450494173452 0.132549373431361 0.136548721825425 0.132959879099413 0.133866177831088 0.145761752390119 0.136621328057094 0.143115567256010 1 1|0 -|/ 22802126 22802782 22802485.7 22801734 22804738 - gene protein_coding_gene FALSE TRUE AT1G61740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11540.1); similar to membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53257.1); similar to Os01g0786800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044474.1); contains InterPro domain Protein of unknown function DUF81; (InterPro:IPR002781) 0.624392762286191 6.81215199805506 0.000108347968927636 0.706428757408186 8.20088655773326 18.884478916935 0.624392762286191 0.0895972454468821
AT1G55170_at 6.92085532472597 6.97251695361886 7.44980296437245 7.14649776515151 8.1982975473559 7.35179524350416 6.82427193544999 6.82407921931486 5.36192814651791 5.18878487668527 6.08567568707585 6.65501726026589 6.59577910656042 5.98954168649186 5.85127015555126 6.38187219723648 5.93923909766815 6.06880463503026 4.79947770491346 0.265930090943948 0.261338917691349 0.263061979472733 0.266724967705799 0.261338917691349 0.277259345907149 0.265900441033691 0.262219323194430 0.301465038972294 0.274058219274869 0.264145074054797 0.261338917691349 0.268989717587361 0.275133793539657 0.261338917691349 0.264111877715848 0.294196264305630 0.277345950349558 0.275033644181244 1 1|0 +|/ 20584522 20585349 20585005 20583941 20585642 + gene protein_coding_gene FALSE TRUE AT1G55170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14750.1); similar to myosin-like protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96059.1); contains InterPro domain t-snare; (InterPro:IPR010989) 0.865168628674032 6.80830659382841 0.000108791326914623 0.709210660156424 8.19774740664263 12.867329729657 0.865168628674032 0.155867325446024
AT4G13840_at 9.60170197307446 9.61429497803594 8.30389144985388 7.89474515313316 9.01917057263831 8.46340542344173 10.2395020376314 10.1276308878953 10.4062621875505 10.4154977835126 10.6013129136006 10.8273204607109 10.4608547381499 10.2586608397742 10.4763623912694 10.5347726584619 9.83112640094823 10.1405357460328 10.3076945726600 0.126817758946254 0.131318318905022 0.146460632911005 0.144096343867927 0.127838305381367 0.132914529035138 0.139469743541868 0.129292914564269 0.133114125856140 0.131595499194668 0.133301434664421 0.131455727488722 0.126937420858343 0.127282727425720 0.134227568717256 0.130885847337835 0.142062265212783 0.134353278289205 0.133801536181032 4 4 - 8014084 8014645 8014434.364 8013889 8016482 - gene protein_coding_gene FALSE TRUE AT4G13840.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G23840.1); similar to Os04g0611200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053836.1); similar to orf [Zea mays] (GB:CAA61258.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.730297949340852 -6.79479038542512 0.000110365597296880 0.719362963181063 8.1866966625881 19.5419693677261 -0.730297949340852 0.121008321292279
AT2G35920_at 5.23851097668121 5.56383686422754 4.25699828414546 4.08409778739747 5.47597735356847 5.64334157749593 4.94262180818624 5.09584504106602 5.46303484884690 5.50375578736469 5.26818774337644 5.04293623374462 4.54350673927349 5.39102931210157 4.15794790779908 4.88954670717325 3.97217884714328 4.51082651413699 5.63437037330293 0.232337495402230 0.224874288888323 0.236660181403651 0.234183861921877 0.228576550673808 0.235230596132747 0.237428248012378 0.234934108754851 0.237817633515183 0.224874288888323 0.224874288888323 0.224874288888323 0.232781327854519 0.237990129298002 0.241008616878802 0.227055568261809 0.24502988499394 0.226465440306648 0.231357556062945 2 2 + 15086812 15087539 15087170.636 15082676 15087891 + gene protein_coding_gene FALSE TRUE AT2G35920.1 helicase domain-containing protein similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G04895.1); similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G01130.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G48650.1); similar to putative helicase [Oryza sativa] (GB:AAL58955.1); similar to putative ATP-dependent RNA helicase [Oryza sativa] (GB:AAG16852.1); similar to putative DEAD/H box polypeptide 36 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52491.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.578400128899834 -6.79369909302594 0.000110493792550771 0.720088046053375 8.1858032784006 10.1655238801453 -0.578400128899834 0.0748788267738624
AT3G11670_at 9.89429085027989 9.88509804092541 9.59984871047014 9.74309095381496 9.62848360606262 9.70202655548778 10.2433238662539 10.5180872053146 10.5785911240949 10.3833767372786 9.64314066984141 9.77050282994658 10.0509395856193 9.76447997162587 9.70286354046346 10.2304592314714 9.99323090598362 9.81299906162796 10.4122894670631 0.0612240634269479 0.0613243892857325 0.0649118443384736 0.0633133522873143 0.0648702600198832 0.0636338273854561 0.0633491849139485 0.0623190081058386 0.0648975737008452 0.0628551862419694 0.0644245738285107 0.0607150987038629 0.06179972603699 0.0619451545205097 0.0619723036587454 0.0607150987038629 0.0668602981019088 0.06185172111861 0.0617596072746288 3 3|0 -|/ 3681127 3681699 3681418.3 3680904 3684552 - gene protein_coding_gene FALSE TRUE AT3G11670.1|AT3G11670.2 DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); galactolipid galactosyltransferase/ transferase, transferring glycosyl groups|DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1); galactolipid galactosyltransferase Responsible for the final assembly of galactolipids in photosynthetic membranes. Provides stability to the PS I core complex (e.g. subunits PsaD, PsaE). Identical to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (EC 2.4.1.241) (DGD1) [Arabidopsis Thaliana] (GB:Q9S7D1;GB:Q3EB81); similar to DGD2 (digalactosyldiacylglycerol synthase 2), UDP-galactose:MGDG galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G00550.1); similar to digalactosyldiacylglycerol synthase 1 [Vigna unguiculata] (GB:ABA55727.1); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW74); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW76); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296)|Identical to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (EC 2.4.1.241) (DGD1) [Arabidopsis Thaliana] (GB:Q9S7D1;GB:Q3EB81); similar to DGD2 (digalactosyldiacylglycerol synthase 2), UDP-galactose:MGDG galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G00550.1); similar to digalactosyldiacylglycerol synthase 1 [Vigna unguiculata] (GB:ABA55727.1); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW74); similar to Digalactosyldiacylglycerol synthase 1, chloroplast precursor (GB:Q6DW76) -0.526923167903828 -6.78787240756354 0.000111181037970628 0.724455643416611 8.18103035792703 20.0663625989352 -0.526923167903828 0.0551353098382422
AT2G39870_at 4.59297407934092 4.84690015665677 5.06745041188115 5.0001906836355 6.17909581399016 5.97753180374927 5.49340570246266 5.73820089676902 5.5356063119612 5.11910253426143 6.8009276887905 6.08317700806557 7.15896140572826 6.72910651653133 6.08424632572419 6.02081079032797 5.7770181013422 5.18048347816549 5.7913664216555 0.22001730927234 0.210289510201698 0.218571662637911 0.214918799043978 0.211625088563742 0.217022468564088 0.216522060645484 0.213120701790584 0.220250090377232 0.215514633911627 0.215297985886608 0.212441135513085 0.215963395310837 0.219966079907223 0.214415807465298 0.213543274322078 0.219336086770743 0.219869336192875 0.215123885929204 2 2|0 +|/ 16651283 16651957 16651541.5 16650461 16652455 + gene protein_coding_gene FALSE TRUE AT2G39870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55690.1); similar to Os01g0850000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044811.1) 0.567756647274203 6.7876881612836 0.000111202846008916 0.72448654174809 8.18087935269541 11.2176519453743 0.567756647274203 0.0712588299242157
AT2G43060_at 8.63353277317349 8.6564955101258 9.26005862664111 9.31341479881018 9.63297366857642 9.5514771972611 9.00086199893284 8.83950420003203 8.00656884686781 8.44836646269121 8.12143354138432 7.62739089111617 9.35362693280953 9.06258544489741 7.69440007060115 8.95675135650421 9.57786802024563 8.74228273484438 8.5361577108855 0.134518629117656 0.134392408384962 0.135410325744077 0.134431094723633 0.136580635644409 0.142376189438899 0.134332875710612 0.136948098168044 0.159763869097470 0.139115517201213 0.145244538691621 0.152614405346220 0.134332875710612 0.135945122798356 0.163654068716662 0.137151238976258 0.139144170136159 0.136835528366275 0.141844535094170 2 2 + 17916324 17916765 17916573.909 17916262 17917159 + gene protein_coding_gene FALSE TRUE AT2G43060.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT4G30410.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89478.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.484280243079171 6.7863013066494 0.00011136715012957 0.725445615944018 8.17974255156592 17.5972432037934 0.484280243079171 0.0328586024833166
AT3G53460_at 10.4957171278237 10.5406986309077 9.92605573444256 9.97082234145803 10.4974834882413 10.2610492032564 8.97293578435717 9.03181730866423 9.27001098577317 9.23526901658168 9.3125148549137 10.0601243478653 9.72031140223039 9.60557651832834 10.3391142557374 9.64175222344401 9.84331884487275 9.23959602917222 8.8522451915936 0.137603853024144 0.132008732026339 0.136875052021298 0.129644397835247 0.13038522893511 0.144799047545239 0.131477700992806 0.132426900703061 0.134312090453822 0.131478659476183 0.125190997601796 0.124545661966397 0.126112944183665 0.123457770179359 0.125007423650446 0.124364412451845 0.136058704375204 0.135625405185374 0.135148130245624 3 3 - 19830919 19831297 19831140.1 19830188 19832483 - gene protein_coding_gene FALSE TRUE AT3G53460.1|AT3G53460.2 CP29 (chloroplast 29 kDa ribonucleoprotein); RNA binding Encodes a nuclear gene with a consensus RNA-binding domain that is localized to the chloroplast. Identical to 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29) (RBP29) [Arabidopsis Thaliana] (GB:Q43349;GB:Q94BT1;GB:Q9LFH2); similar to 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative [Arabidopsis thaliana] (TAIR:AT2G37220.1); similar to 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) (GB:Q08935); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.502336986916209 6.7843544700066 0.000111598247531520 0.726839386172791 8.17814626452276 19.3818042645039 0.502336986916209 0.0435725353715049
AT4G18280_at 7.5920283995637 7.74782690402132 8.01953335948407 8.28357440229167 8.80089140779941 8.56310897167377 8.29351772237374 8.6677125120408 7.97508801579368 7.85718617694993 9.12880395291353 8.6094911480472 9.16874248714618 9.18555494106348 7.9865939145998 8.8865622997236 8.66921243758802 8.7118490808606 7.77332248292547 0.160776962246593 0.152001416828067 0.167565871570727 0.152732431360892 0.161652547979827 0.167108366319225 0.159461872886999 0.154678219035477 0.161851150843691 0.153446511917315 0.150273285710278 0.153975348434337 0.147909480711811 0.154378963508608 0.160442599167272 0.155071177745145 0.162612801358257 0.150802359611306 0.151608342982318 4 4 + 10104108 10104496 10104301.182 10104007 10104744 + gene protein_coding_gene FALSE TRUE AT4G18280.1 glycine-rich cell wall protein-related 0.633162354166055 6.77957129428631 0.000112168273640098 0.730439797944318 8.17422201998539 16.5769659638890 0.633162354166055 0.0932816125614483
AT2G34810_at 6.1156569275123 6.46825585934719 6.35838115244909 6.60412051022438 6.53610142594539 5.88832573022764 6.24549588468895 6.20703965224854 4.0325089600157 4.14405568446935 5.49957372130009 5.52657301692828 5.54294449844131 5.49425288395978 4.60140370867454 5.95516076925142 6.13892425158736 5.18985713619023 3.89066581526993 0.201349228445510 0.196229868893931 0.204609842478869 0.201050080147165 0.198536542179250 0.206117973074972 0.193221134946988 0.201712643773932 0.204849464956923 0.211711141155651 0.196562347973525 0.192774963157405 0.201907752230556 0.197878686218314 0.2113790736777 0.197271855354798 0.197072809444496 0.206778722205001 0.208289134002388 2 2 + 14693446 14693962 14693702.545 14692335 14694141 + gene protein_coding_gene FALSE TRUE AT2G34810.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30720.1); similar to FAD linked oxidase, N-terminal [Medicago truncatula] (GB:ABD32603.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.779398109401175 6.77906950346507 0.000112228259045917 0.730718194647966 8.17381014519348 11.0609203436021 0.779398109401175 0.134694579602906
AT1G14720_at 8.40255171312874 8.4959669989217 8.44292462675403 8.49652124840468 8.85319509978333 8.63153082682466 7.49352772664643 7.71771331287348 6.79002896802134 7.08098789389017 7.54602510794809 7.59906594752986 7.97976621002375 7.43094456742063 7.93665046459437 7.33998239623213 7.72835014358219 6.93995015911454 7.36043086593246 0.183828463513578 0.174492945611132 0.180964717537820 0.178418040871954 0.174629989427738 0.188468356783169 0.179416311581901 0.178169735332492 0.191889015326883 0.187034902933881 0.176388739981112 0.185573588652839 0.184891992933685 0.188677051380232 0.181581008550800 0.184374440484438 0.178561587423079 0.188437114953517 0.185311102858797 1 1|0 -|/ 5066814 5067786 5067071.3 5066631 5068640 - gene protein_coding_gene FALSE TRUE AT1G14720.1 XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2); hydrolase, acting on glycosyl bonds member of Glycoside Hydrolase Family 16 Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 28 precursor (EC 2.4.1.207) (At-XTH28) (XTH-28) (XTH28) [Arabidopsis Thaliana] (GB:Q38909;GB:O04750); similar to EXGT-A3 (endo-xyloglucan transferase A3), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT2G01850.1); similar to ETAG-A3 [Solanum lycopersicum] (GB:BAA88668.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) 0.532022822245064 6.77789520010337 0.000112368776374551 0.731520734198327 8.1728461228157 15.6366120027523 0.532022822245064 0.0576542827166558
AT1G20540_at 8.21087912337673 8.1389921451618 7.61292901221010 7.52650936512206 8.50955884034662 8.2131364316976 8.22488675634078 8.2804265328764 8.77246133585686 8.76116012538486 7.9756488578004 8.36498206532014 7.72357301193633 8.31623763747974 8.38864214394045 8.10792119636455 7.40258893570413 7.8015633304098 8.91492653160394 0.154230738730527 0.146490134416952 0.164303588478143 0.175664948804267 0.155972322370849 0.163628481308856 0.156084682796813 0.146490134416952 0.155264788047433 0.150093580596075 0.148889092858725 0.146771657025260 0.154109996491555 0.150838045889377 0.151144145542459 0.151402707725312 0.161110452388076 0.146490134416952 0.146490134416952 1 1|0 +|/ 7113734 7114992 7114388.429 7112601 7115352 + gene protein_coding_gene FALSE TRUE AT1G20540.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G76260.1); similar to transducin / WD-40 repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD10224.1); similar to Os08g0554000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062463.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.527150372003639 -6.77413991238392 0.000112819435548155 0.734341705982942 8.16976194664175 16.5028284317172 -0.527150372003639 0.0556975310811096
AT3G28940_at 10.6653423733481 10.6111527035988 11.0688417867244 11.0995216985254 11.0221795973106 10.6902193213512 10.0355042598994 10.1255143152754 10.4622572424342 10.2030122647344 10.6836449055191 10.7855666801129 10.4753511766937 10.8138416056800 10.6949954276193 10.6536058345133 10.4436367271511 10.8199379544278 9.95096250334601 0.0938943268440778 0.0916888651340264 0.101164260728927 0.0991436110104208 0.097637631589466 0.100358702853544 0.0907916952304227 0.101192788546308 0.0964637995649412 0.091337301032379 0.0940837337262885 0.09311981784255 0.0959160728738455 0.0960119746654994 0.0920689720806873 0.0956286599142482 0.0936834797370502 0.0906743293511589 0.0966817495267538 3 3|0 -|/ 10969572 10970518 10970098.3 10969337 10970624 - gene protein_coding_gene FALSE TRUE AT3G28940.1 avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative similar to AIG2 (AVRRPT2-INDUCED GENE 2) [Arabidopsis thaliana] (TAIR:AT3G28930.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to Os02g0141000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045856.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 0.538362028370289 6.7715622058941 0.000113129928042171 0.736249571698446 8.16764372010386 21.1031511115723 0.538362028370289 0.0604892797850797
AT3G07770_at 7.9086151418544 8.06814528443602 8.12162586462763 7.7153409152845 7.67231624291257 7.14805686622545 8.26555934252823 8.09081214578681 7.13994831211953 7.42313780307842 5.6913035612154 6.16666962130105 5.92340336085763 5.8992362166961 5.81674133857239 6.91240256090577 6.9284700698172 5.82331021657451 7.00050153400286 0.204638285430924 0.204713027398472 0.198703502225884 0.203457367843733 0.211411827217829 0.205522259914200 0.206011173065312 0.207630440477684 0.208217819470061 0.19730161055811 0.205816778215067 0.206147752851277 0.205080488275788 0.20779743010426 0.198125489258594 0.199206117546384 0.203295794596377 0.202968058784933 0.19730161055811 3 3|0 +|/ 2483232 2483898 2483616 2479554 2484200 + gene protein_coding_gene FALSE TRUE AT3G07770.1 ATP binding similar to CR88 (EMBRYO DEFECTIVE 1956), ATP binding [Arabidopsis thaliana] (TAIR:AT2G04030.1); similar to heat shock protein 90C [Chlamydomonas reinhardtii] (GB:AAU10511.1); similar to heat-shock protein [Secale cereale] (GB:CAA82945.1); similar to Hsp90 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22030.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) -0.730809218939962 -6.7705510305029 0.000113251983780843 0.736930658461944 8.16681252472035 14.540336309445 -0.730809218939962 0.121865605808719
AT1G33260_at 5.21426210812389 5.6579395691997 4.53320007053383 5.37449996979429 4.3878718996083 4.18840547034941 7.11462792485694 7.73538713835792 5.19384427505911 5.87356946656987 5.56160716477402 5.38953647817173 4.84117793421665 5.30989653544142 4.72748222625641 4.89856147430633 4.89248925998932 4.95811751259143 4.95160968623105 0.235530322969669 0.22304783149435 0.23197388679221 0.22304783149435 0.225122922206208 0.251521912079094 0.233955238630817 0.230529472945915 0.236156203279858 0.22304783149435 0.227670816865841 0.223241822605040 0.22304783149435 0.225609139455101 0.22304783149435 0.22304783149435 0.232170481174592 0.22304783149435 0.227075891904084 1 1 + 12065519 12066059 12065715.818 12064489 12066356 + gene protein_coding_gene FALSE TRUE AT1G33260.1|AT1G33260.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10390.1); similar to Os02g0648100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047579.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053443.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G10390.1); similar to Os02g0648100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047579.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to Os04g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053443.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -1.03843786764904 -6.76774513965616 0.000113591433304177 0.739025865076978 8.16450527898128 10.7317907934389 -1.03843786764904 0.199558671773784
AT4G28400_at 9.78170738414612 9.85818465118889 10.6220180835274 10.5447223834965 10.4101561820842 10.2687046329291 9.34177432825137 9.1095235187252 8.89495361433187 9.09476395969837 9.11593468643992 8.91163659105871 9.14568198228814 9.26733548764966 8.54397381687038 9.21454524885834 9.08917263252587 8.99779338178982 8.84052961292341 0.110550839590169 0.110681316210641 0.116221563827939 0.113135474907310 0.110287775667724 0.119268751891703 0.105651068979525 0.114249182447093 0.134751210062239 0.114752674903037 0.116442083021466 0.112015937978315 0.109042352761936 0.105627240915012 0.114888745416262 0.105413126227304 0.124027249812602 0.127674447951928 0.107624471517644 4 4 + 14049411 14049845 14049585.727 14048300 14050341 + gene protein_coding_gene FALSE TRUE AT4G28400.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G20630.1); similar to protein phosphatase 2C [Lycopersicon esculentum] (GB:AAS86762.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.515473174690985 6.76757628844356 0.000113611896169928 0.739045384585379 8.16436639844425 18.9816863742534 0.515473174690985 0.0506823834852832
AT3G25020_at 6.84769833619299 7.01643907849609 7.58061404319562 7.51929366508804 6.66393751801101 6.46878428311112 3.06250368384884 3.74704206390584 4.52308331510442 3.79811218313742 3.87580863007593 3.92712918308148 3.4095217686337 3.38850938237463 3.54851331074088 3.89174153563325 3.81425020965289 4.11002109094272 4.08848220136640 0.288591225020400 0.287196414184242 0.283421179785847 0.284827573397219 0.283242918927382 0.280857121262948 0.281279554049213 0.273204823456989 0.276560457307407 0.277636456645338 0.28569550100764 0.274444039040661 0.278639263045950 0.283772509136818 0.275218107317316 0.271409381759208 0.280200620240302 0.271409381759208 0.274088436314117 3 3 - 9116896 9117446 9117059.455 9116875 9119547 - gene protein_coding_gene FALSE TRUE AT3G25020.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G24982.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25010.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.749432121214849 6.76722364930414 0.000113654645143331 0.739209812012222 8.1640763385239 10.0544121450285 0.749432121214849 0.127040418294535
AT2G28000_at 9.80902023406107 9.88567572690718 9.20347479766973 9.18791441008804 9.25855330690957 9.13067175044252 10.4675270853814 10.4176239232333 9.40794750721163 10.2213683906965 9.61422324910788 10.3159560988644 9.71510433678366 9.57695981370553 10.6675908807534 10.0256003772938 9.941672616363 9.42206739157585 10.1030259991022 0.112156859410814 0.110987345799297 0.115327207831726 0.114714548241534 0.111500959201557 0.114480525714243 0.110987345799297 0.115565772631418 0.132250469708282 0.113592103357586 0.118336181481354 0.112202305748933 0.116757345879164 0.114548596864388 0.116957159252502 0.111949279586527 0.112103690542512 0.117290535947557 0.111091413765439 2 2|0 +|/ 11935661 11936236 11935986.9 11933526 11936466 + gene protein_coding_gene FALSE TRUE AT2G28000.1 CPN60A (chloroplast / 60 kDa chaperonin alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes chaperonin-60 alpha, a molecular chaperone involved in Rubisco folding. Mutants display aberrant chloroplast and embryo development. Identical to RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) [Arabidopsis Thaliana] (GB:P21238;GB:Q42554); similar to EMB3007 (EMBRYO DEFECTIVE 3007), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G18820.1); similar to chaperonine 60K alpha chain - rape (fragment) (GB:PW0005); similar to RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) (GB:P34794); similar to RuBisCO large subunit-binding protein subunit alpha, chloroplast precursor (60 kDa chaperonin subunit alpha) (CPN-60 alpha) (GB:P21239); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.475345981449572 -6.76702179834263 0.000113679122657695 0.739255334642992 8.163910299831 19.5803963932830 -0.475345981449572 0.0273416556675509
AT1G19525_at 5.36047024935086 5.60231951452412 4.55499083166751 4.79438885025993 4.69371967000423 4.75784299760468 5.37891007618926 5.6069435765271 4.47134353595819 4.55494448998576 3.68737436408918 4.83442805630443 4.44041194680342 3.72414834308720 4.40036747834057 4.18343937609886 4.85098708608691 4.54514621882287 5.01596320604792 0.216248990740040 0.214343891501356 0.205351299294482 0.215265650732198 0.208432459081751 0.211930194153795 0.205351299294482 0.209563645862069 0.211797168366561 0.207695313357315 0.215406696380244 0.206043484920604 0.206262027182829 0.216553396494341 0.210381442359614 0.208272172062829 0.208139080016868 0.209920036729976 0.208849685955684 1 1 + 6762046 6762519 6762276 6761511 6762769 + gene protein_coding_gene FALSE TRUE AT1G19525.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G01970.1); similar to pentatricopeptide repeat protein [Physcomitrella patens] (GB:BAF34329.1); similar to Os07g0661900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060542.1); similar to Os02g0611400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047406.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.567193909361763 -6.76471849140582 0.000113958844875404 0.740960409379875 8.1620152247925 9.60071735545003 -0.567193909361763 0.0717527203150383
AT3G15570_at 8.70084372165047 8.78419980390783 8.24424465672972 8.32010416817312 8.93106452021371 8.93262684260593 9.55591940989468 9.59335801526346 9.9056004225383 9.83396365366844 9.4453608558139 9.67530721782995 9.45024245420212 9.44997380298644 9.43228222623132 9.66360149309558 9.13182517108713 9.36520365772613 9.76689964900381 0.099129673276353 0.101882870373622 0.109988009281035 0.102494641503698 0.101177682133733 0.100747152767537 0.103289346445018 0.103428369490032 0.108443184515736 0.102719216269207 0.101057503702684 0.102068256789239 0.0985434851392717 0.102499745931085 0.105532043132454 0.101671784172858 0.102042778784099 0.107440716390318 0.0985434851392717 3 0|3 /|- 5270337 5270777 5270581.3 5269856 5271929 - gene protein_coding_gene FALSE TRUE AT3G15570.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G52770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77355.1); contains InterPro domain NPH3; (InterPro:IPR004249) -0.467666744640213 -6.76467074346118 0.000113964651570131 0.740960409379875 8.16197593140504 18.5264014014424 -0.467666744640213 0.0205541971213727
AT1G02260_at 6.23042087094974 6.08460172834434 5.71302500020649 5.66082341134992 6.5329060316857 5.83795120048629 3.81248195334661 4.10236541550467 4.24383886689718 4.14611041926897 5.21782392555467 4.88666391773347 4.88224337071352 4.86422001328376 4.72715151464852 5.06103844224298 4.4977168032939 4.77865791981504 4.21087508844003 0.250721723796586 0.243876327749956 0.243876327749956 0.250881613869167 0.250460465767382 0.261243461415679 0.246095810316319 0.249723068801147 0.251921433043159 0.248624009070603 0.248558843065151 0.244109024815089 0.248784087395030 0.247612869808556 0.248369554229005 0.243876327749956 0.254109126166967 0.24598067979547 0.247497067913635 1 1 - 440757 441453 441063.545 440441 442877 - gene protein_coding_gene FALSE TRUE AT1G02260.1 transmembrane protein, putative similar to Os03g0147400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048962.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE87631.1); contains InterPro domain Citrate transporter; (InterPro:IPR004680) 0.77143680788555 6.76413335066805 0.000114030027116064 0.741195176254417 8.16153366996523 10.0291790914573 0.77143680788555 0.133036482441523
AT3G04840_at 10.4903041956098 10.5863194695266 9.99083605165834 10.0742217952777 9.83661769450923 9.75853405646689 10.9641504440654 10.9285877335821 10.2017039594157 10.2457032816968 10.0619286001710 10.4688396491771 9.76217248208176 9.80606649583338 10.7962099080630 9.51949078923444 9.49546418024998 9.78389119783238 9.79876618033768 0.0865950560548936 0.0825010497606237 0.0885663756850993 0.0835870328841323 0.091250754708675 0.0941601950715184 0.0848986585762232 0.0840130425281509 0.098222632465881 0.084628190428031 0.0853242854176618 0.082396678301841 0.0889263302325489 0.0904868182729704 0.085690804034069 0.0865733507942349 0.0960541485259764 0.0868428287278172 0.085753908493723 3 3|0 +|/ 1330503 1331368 1330871 1329671 1331623 + gene protein_coding_gene FALSE TRUE AT3G04840.1 40S ribosomal protein S3A (RPS3aA) Identical to 40S ribosomal protein S3a-1 (RPS3AA) [Arabidopsis Thaliana] (GB:Q9CAV0); similar to 40S ribosomal protein S3A (RPS3aB) [Arabidopsis thaliana] (TAIR:AT4G34670.1); similar to 40S ribosomal protein S3a (S phase-specific protein BIS289) (GB:P49396); contains InterPro domain Ribosomal protein S3Ae; (InterPro:IPR001593) -0.473793977768814 -6.75889391248531 0.000114669587970914 0.745237652222971 8.15721953636048 20.3506042900772 -0.473793977768814 0.0265478917510659
AT1G79590_at 8.98744638589925 8.9970118638621 9.39255607089911 9.31629231255331 9.53581702432342 9.58950025390397 8.83594356505566 8.74486913358045 8.15780111065216 8.22930556460673 8.74471603656186 8.07513030984665 8.82071423607652 8.69188780783106 8.54785892225727 8.49681708039697 8.58368394208496 8.90192523621763 8.32364306340241 0.128483568628955 0.126872812049453 0.129606538469024 0.130083669095848 0.130333919445229 0.134312472592458 0.130281341679028 0.126872812049453 0.143988009567213 0.129220090159108 0.134102592227503 0.133407217109279 0.128345906085784 0.133301266690601 0.129863846839867 0.129892541431185 0.129919946441414 0.131380790065270 0.136428839546997 1 1|0 +|/ 29952077 29953156 29952575.778 29951130 29953667 + gene protein_coding_gene FALSE TRUE AT1G79590.1|AT1G79590.2 SYP52 (SYNTAXIN OF PLANTS 52) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. Identical to Syntaxin-52 (AtSYP52) (SYP52) [Arabidopsis Thaliana] (GB:Q94KK7;GB:Q9MA16); similar to SYP51 (SYNTAXIN OF PLANTS 51) [Arabidopsis thaliana] (TAIR:AT1G16240.2); similar to Os02g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045701.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM52319.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.469074397587967 6.75509280418247 0.000115136046454655 0.748154029862347 8.1540872178418 17.5973087142411 0.469074397587967 0.0226193106764086
AT1G07790_at 7.65517514124101 7.63083500944655 7.06551421818105 6.94282659104008 7.79650432650737 7.22704622461165 8.72573206679708 8.64878324164783 7.89693098387572 8.14338047527816 7.8240183418758 7.84060601484806 7.30389039499707 7.3536201094528 8.04037233806775 7.75014797867214 7.14673858223062 6.4676232899989 7.5871901925592 0.200688489900969 0.195718090971249 0.195300138359896 0.195766643014471 0.190474945478089 0.199045028525052 0.200326936890613 0.197623643063373 0.227609549081076 0.198186505151731 0.196520072892446 0.193760125182062 0.192680811757721 0.208176143295999 0.190829933935711 0.192788714192625 0.210256633791694 0.205927459324524 0.197420857101611 1 1 + 2413052 2413465 2413269.455 2412977 2413705 + gene protein_coding_gene FALSE TRUE AT1G07790.1 histone H2B, putative Identical to Histone H2B.1 (HTB1) [Arabidopsis Thaliana] (GB:Q9LQQ4;GB:Q8L950); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.65855763866727 -6.7528127499581 0.00011541684792855 0.749863260991789 8.1522073205618 15.3824076100202 -0.65855763866727 0.101771496434484
AT3G04780_at 7.16903096958154 7.00112992991229 7.15919521977673 7.53366467266744 7.72178932798643 7.58291716791396 7.08055197176378 6.998266571738 6.143816274073 6.24701157441754 7.14221121875623 7.28672299028754 6.76520253578651 7.30590123249392 7.17040361784637 7.09112489969824 6.9808138870027 6.40916900059537 6.5040615998752 0.209525495081092 0.205122523930558 0.210760482530296 0.209336637212162 0.212651961478017 0.224164625972478 0.200496477332030 0.217851080552116 0.221298810207932 0.209445781521282 0.212054906636311 0.204543973711987 0.209854035416587 0.200496477332030 0.214154619136476 0.200496477332030 0.206886024798574 0.213160820883578 0.217388604957834 3 3|0 -|/ 1311642 1312992 1312081.75 1311253 1313096 - gene protein_coding_gene FALSE TRUE AT3G04780.1 Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein. Identical to Protein At3g04780 [Arabidopsis Thaliana] (GB:Q9SQZ9;GB:Q93Z56;GB:Q9CAU6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25950.1); similar to Os03g0795500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051549.1); similar to thioredoxin [Bombyx mori] (GB:NP_001040348.1); contains InterPro domain Protein of unknown function DUF1000; (InterPro:IPR010400) 0.578896963178512 6.75151728265665 0.000115576727561966 0.750786422242531 8.1511388746249 13.939438306716 0.578896963178512 0.0763158302400078
AT4G35310_at 9.38336252878597 9.4276026252340 9.56171488871608 9.65865146536312 9.44567691583047 9.3776604197048 8.91553597441924 8.93646207173876 8.78474991793838 7.98225637286402 8.99952726293496 8.92112652100282 8.91022063157896 8.91862631255867 8.62131000361927 8.7007171784924 8.9213879517331 9.01821331991905 8.08869316134354 0.113469371669135 0.109701330987915 0.112903996262404 0.112742228908985 0.115759359010319 0.112010351102118 0.114743264494545 0.111225843695636 0.114976999417742 0.124122208361229 0.110618602211194 0.110640960088837 0.111464763829694 0.111417651873990 0.108262510313183 0.110298339514506 0.111757319641470 0.108963891169264 0.121892977173987 4 4|0 +|/ 16803759 16804371 16804069.4 16801992 16805000 + gene protein_coding_gene FALSE TRUE AT4G35310.1 CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5); calcium- and calmodulin-dependent protein kinase/ kinase calmodulin-domain protein kinase CDPK isoform 5 (CPK5) similar to CPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6), anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G17290.1); similar to CPK2 (CALMODULIN-DOMAIN PROTEIN KINASE CDPK ISOFORM 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G10660.1); similar to CPK1 (calcium-dependent protein kinase isoform AK1), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G04870.1); similar to putative calcium dependent kinase 6 [Brassica rapa subsp. pekinensis] (GB:AAZ32752.1); similar to calcium dependent kinase 5 [Brassica oleracea var. alboglabra] (GB:AAZ32751.1); similar to putative calcium dependent kinase 6 [Brassica napus] (GB:AAZ32753.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.468171559686858 6.74874219424703 0.000115920034674902 0.752900625213488 8.14884927754146 17.9191455104467 0.468171559686858 0.0221739900289210
AT4G18930_at 9.54368285692048 9.49722996519696 9.7540884113031 9.66683332311523 9.72816877274758 9.3582062769454 8.31630946813284 8.24042026844852 7.93125072886909 8.37667894560365 8.597014367007 8.39888741057226 8.51664423530423 8.70747252978043 8.06814898589332 8.38500603753638 8.76815050462237 8.55461802796407 8.04956596781038 0.204459747916138 0.207198209635817 0.213398023536092 0.218253252826604 0.204064613489341 0.210399662383327 0.197883808209485 0.209517869185558 0.234035768982573 0.212825302528918 0.211198093278157 0.218207785957155 0.207468249807835 0.223358205378841 0.227222441973586 0.205356442322462 0.219149140087358 0.227209709186657 0.209154633803474 4 4 + 10370895 10371869 10371412.273 10370715 10372056 + gene protein_coding_gene FALSE TRUE AT4G18930.1 cyclic phosphodiesterase Identical to Cyclic phosphodiesterase (EC 3.1.4.-) (CPDase) [Arabidopsis Thaliana] (GB:O04147); similar to cyclic phosphodiesterase, putative [Arabidopsis thaliana] (TAIR:AT4G18940.1); similar to Appr>p cyclic nucleotide phosphodiesterase [Medicago truncatula] (GB:ABE80637.1); contains InterPro domain Appr>p cyclic nucleotide phosphodiesterase; (InterPro:IPR009097); contains InterPro domain 2 , 3 cyclic phosphodiesterase, plant; (InterPro:IPR012386) 0.55387055229688 6.7405649864862 0.000116938179550528 0.759396538001129 8.1420961119514 17.5724464060659 0.55387055229688 0.0675584530022543
AT3G12150_at 5.66890883347413 6.18523299233869 5.37379880991893 5.22686693070687 6.14813003566411 6.08398918508663 7.30886784978298 7.05083596287333 6.65499512132127 6.76573939328365 6.6369442546066 6.47145796987867 6.22031127306045 6.18540893578098 6.44934607267234 6.52096709453901 5.64042674291674 6.05184346819175 6.84086761791269 0.197146188747852 0.195725576605824 0.194643677933175 0.1998749399353 0.195939032665318 0.207891756314842 0.199150328563098 0.199464297506221 0.204115018828735 0.199369978079510 0.191322703602725 0.189958122809427 0.194309883700791 0.198967436566762 0.192350265286033 0.198951673566596 0.210867844840241 0.189958122809427 0.19753489453704 3 3 - 3876728 3877766 3877219.909 3876414 3878907 - gene protein_coding_gene FALSE TRUE AT3G12150.1 similar to unnamed protein product; contains similarity to unknown protein gb|AAF49891.1 gene_id:T23B7.11-related [Medicago truncatula] (GB:ABE94640.1); similar to Os02g0195000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046183.1); contains domain no description (G3D.3.40.50.1820); contains domain SUBFAMILY NOT NAMED (PTHR13617:SF1); contains domain alpha/beta-Hydrolases (SSF53474); contains domain FAMILY NOT NAMED (PTHR13617) -0.663522160161599 -6.73822769337291 0.000117231000863548 0.761180888607018 8.14016406003003 12.6438066269615 -0.663522160161599 0.103670305129484
AT3G23280_at 10.9294399922018 11.1105512196071 11.2986731290831 11.3367751540549 11.5588671728446 11.2170609613191 10.6090090528474 10.2982469063866 9.82171341580031 9.76736265021924 10.3944862253060 10.1138810196958 10.4931234913485 10.3016340203243 10.1113171935175 10.1535398968668 10.4574040546433 10.5246331255195 9.57650640866796 0.0837827533914189 0.0797400407794985 0.0835802863829099 0.0842554900283417 0.0825676174847137 0.0883020026153629 0.0805789182681513 0.0797400407794985 0.0921391628198153 0.092151028074434 0.0798362056491142 0.0797400407794985 0.0830369130983287 0.0858472272373754 0.0837789616961434 0.0820013588920093 0.0928815920917477 0.0823726864701994 0.091729331002125 3 3 + 8323622 8324053 8323843.364 8321357 8324435 + gene protein_coding_gene FALSE TRUE AT3G23280.1|AT3G23280.2 zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein similar to zinc finger (C3HC4-type RING finger) family protein / ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14365.1); similar to auxin-regulated protein-like protein [Populus trichocarpa] (GB:ABG37641.1); similar to Os07g0446100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059535.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.606461932535762 6.73413967028656 0.000117745098531983 0.764401179669636 8.13678290263011 21.0651345501923 0.606461932535762 0.0861210214287226
AT4G01010_at 6.05536018232908 6.39706373238168 7.14443884618062 7.40436692288414 6.60119404655872 6.01364957189894 3.92154998106236 3.7272893237621 4.48051542449212 3.95701107876616 4.07812454503791 3.47571177875379 3.81977232731479 4.42802727394588 3.72341420541107 4.32372624557765 3.99823251725796 3.66160133796116 4.12815892276185 0.291340964606589 0.293960504428079 0.28717028198721 0.284987234578081 0.295526229088953 0.281736507076357 0.282014537939063 0.283265958701276 0.288900653955866 0.278981159224613 0.286468640207251 0.285221925547574 0.278981159224613 0.284129151867637 0.297100978509894 0.278981159224613 0.295702822699224 0.284182694951877 0.278981159224613 4 4 - 434577 435169 434796.455 434569 437242 - gene protein_coding_gene FALSE TRUE AT4G01010.1 ATCNGC13 (cyclic nucleotide gated channel 13); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Putative cyclic nucleotide-gated ion channel 13 (Cyclic nucleotide- and calmodulin-regulated ion channel 13) (CNGC13) [Arabidopsis Thaliana] (GB:Q9LD40); similar to ATCNGC10 (CYCLIC NUCLEOTIDE GATED CHANNEL 10), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G01340.1); similar to CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1), calmodulin binding / cation channel/ cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G53130.1); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to Probable cyclic nucleotide-gated ion channel 10 (Cyclic nucleotide-and calmodulin-regulated ion channel 10) (CaM-regulated potassium ion channel) (GB:Q9LNJ0); similar to cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] (GB:AAF33670.1); similar to cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] (GB:AAF33669.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821) 0.757805506115474 6.73271828187085 0.000117924428738377 0.765447466940805 8.13560671635564 9.97168311967266 0.757805506115474 0.130340107880228
AT2G41950_at 7.19855888201665 7.80570015422679 6.21796356100555 6.40652955676203 6.62876957745027 6.26769455275216 7.70878741928194 7.68277594310845 7.68478180601496 7.41453686835802 7.31799119903022 7.77923029668647 6.71867840266147 7.20486918260355 7.9001817734325 7.21002549826602 6.60211484685622 7.40217745928537 7.50881216549237 0.208864921103953 0.201982971707049 0.220451392254688 0.216217954770822 0.212757960273956 0.216943135782286 0.210282660630249 0.202802753502099 0.214129403677618 0.207317574089066 0.205561765452997 0.201580144997226 0.210179950343741 0.206470988458168 0.213106493194524 0.201580144997226 0.228356686061238 0.210896327602788 0.202135266285889 2 2|0 +|/ 17520421 17521076 17520806.9 17520157 17521245 + gene protein_coding_gene FALSE TRUE AT2G41950.1 similar to Os03g0226700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049441.1); similar to Methyltransferase type 11 [Syntrophobacter fumaroxidans MPOB] (GB:YP_847674.1); contains domain Hypothetical protein MTH1020 (SSF75569) -0.743925659300838 -6.73192835121907 0.000118024220608379 0.765977191748381 8.13495292811253 14.3910735536461 -0.743925659300838 0.126605712166210
ATMG01370_at 6.77031057323023 8.2052997383317 5.31884942168534 6.43712950720241 5.50619666483923 5.51098679132461 7.69916735644768 8.597232581301 7.14349045485838 7.50648081569014 5.56313412154323 6.41745501037304 6.64231842860664 6.60901884124691 5.02447932490234 6.88937207074371 6.61457723986091 6.18755490727419 7.85321879552084 0.275180048193616 0.268420775209773 0.295992180229236 0.285268080165398 0.27381014252225 0.275096963892969 0.274701983469348 0.275595760212584 0.289763891829322 0.268420775209773 0.268420775209773 0.268420775209773 0.27734899718668 0.275732017568752 0.278722624378289 0.269137896782420 0.287476508182674 0.284723191012976 0.270365791605283 M M - 360736 360995 360848 360717 361052 - gene protein_coding_gene FALSE TRUE ATMG01370.1 Identical to Hypothetical mitochondrial protein AtMg01370 (ORF111d) [Arabidopsis Thaliana] (GB:P92565) -1.69114328917617 -6.72245979117549 0.000119227640153008 0.773668156952867 8.12710914581494 13.6279226285079 -1.69114328917617 0.351104344024229
AT1G77670_at 6.48836788450652 6.83470421741956 5.99668188457243 5.88947511429137 5.57377313169884 6.29264394705666 7.5501135529002 8.19204689065764 6.81484234761816 7.01261489152471 6.3185391684186 6.35599739428441 5.84961322405399 5.99259851703032 6.25406051647524 6.6260987548138 5.95147746452045 6.2054471766761 6.43101685167512 0.190301200976483 0.190305478944508 0.190089603586592 0.19095657812489 0.197685628510180 0.191064086055346 0.197574133782659 0.203906267406193 0.209232524777847 0.194987698947110 0.186425335775311 0.188030962628193 0.191814550889762 0.197854516519563 0.187905930762115 0.186425335775311 0.192773799657419 0.186425335775311 0.196875926708532 1 1 - 29194045 29194506 29194286.636 29193795 29195869 - gene protein_coding_gene FALSE TRUE AT1G77670.1 aminotransferase class I and II family protein similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to Os09g0453800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063347.1); similar to putative asparate aminotransferase [Hordeum vulgare] (GB:BAE86874.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.943380143435686 -6.72123630647282 0.000119384122783656 0.774564188620357 8.12609465037433 13.0757526898746 -0.943380143435686 0.178195539932137
AT3G21390_at 6.32719909615598 6.24326951442306 5.98739373553214 6.06344121411168 6.6661478555305 5.96940238691778 8.66672943420624 8.2797588772831 7.9136656200119 8.40069253958244 8.21647029568424 7.98740072201733 7.68359298494827 8.09218286785388 7.265034746745 8.33730041160315 7.29774262842355 7.58174727648352 8.22590724089201 0.241574209227137 0.238243620689941 0.251768327647198 0.251077490580910 0.235188094025740 0.256892404442561 0.244128077658414 0.235188094025740 0.250921915006863 0.237086570027384 0.239141900763243 0.237386074710793 0.238087437950901 0.240575336635506 0.239797885606508 0.239540721504085 0.250874536224502 0.248507474281531 0.241662159347782 3 3 + 7533265 7534383 7533808.818 7531408 7534550 + gene protein_coding_gene FALSE TRUE AT3G21390.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G48970.1); similar to Os01g0934200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045309.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL56581.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.790023703801494 -6.72012336958478 0.000119526662662635 0.775369460692516 8.12517162915636 14.7693039935444 -0.790023703801494 0.139309311098244
AT1G55520_at 6.52130284569239 6.98791456488672 7.45394781287577 7.25208044562243 8.1089448369726 7.37713014058606 6.97530309290161 6.52471068986977 5.79264321895739 5.59027490082305 6.92724240829238 6.91913493628347 6.76170623366884 6.9878374629258 6.41424699710529 7.80735808260031 6.93544541144283 6.83680099283585 6.32397740582215 0.261973037219628 0.262550588856574 0.269259457940563 0.270541620160893 0.262141277954338 0.271026098108938 0.273494204083590 0.264756751786568 0.270684827500427 0.282153225338398 0.264988864132676 0.259743729597592 0.262078267490586 0.261976997647222 0.269689520144168 0.26040276501101 0.263507388415115 0.286098775500806 0.270495829060636 1 1|0 -|/ 20729862 20731111 20730499.111 20729392 20731757 - gene protein_coding_gene FALSE TRUE AT1G55520.1|AT1G55520.2 TBP2 (TATA binding protein 2); DNA binding / RNA polymerase II transcription factor TATA-box binding protein. Required for basal transcription. Acts facilitating the recruitment of TFIID to the promoter, which together with the RNA polymerase form the preinitiation complex. Identical to TATA-box-binding protein 2 (TATA-box factor 2) (TATA-binding factor 2) (TATA sequence-binding protein 2) (TBP-2) (Transcription initiation factor TFIID TBP-2 subunit) (TBP2) [Arabidopsis Thaliana] (GB:P28148); similar to TBP1 (TRANSCRIPTION FACTOR IID-1), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G13445.1); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain TATA-box binding; (InterPro:IPR000814); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.921070533893371 6.71785295827613 0.000119818027379163 0.777139725581251 8.12328808665186 13.5756768407652 0.921070533893371 0.172800362975234
AT3G05290_at 5.79505483068007 6.39731303734079 6.69983782148911 7.00591010345295 7.40011913195167 7.34865011291038 4.99905516093642 5.56765997594108 5.82687061010906 5.79255200415554 6.00350747587349 6.05049404166273 6.03844552780682 6.18620359986884 5.48381255270285 6.37246713877227 5.85770987006229 6.26728063425591 5.69694704816593 0.257190583380872 0.248016916059528 0.25979226128385 0.259479595478467 0.250359003849651 0.264775509038716 0.260311730269741 0.257092321738831 0.257682658267303 0.253005075216395 0.250094230523429 0.249084804527713 0.248647781728323 0.259691362016370 0.249810303441328 0.248016916059528 0.265242039431436 0.251635876391058 0.251160972213418 3 3 - 1506165 1506871 1506478.182 1505896 1507706 - gene protein_coding_gene FALSE TRUE AT3G05290.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G27520.1); similar to Os05g0392700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055452.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL50155.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.842112712770958 6.71301973696639 0.000120440885736994 0.781059144004408 8.11927591084013 12.3040066848057 0.842112712770958 0.153068360066376
AT1G75800_at 9.95238372687825 10.0272760814202 9.8171575313987 9.8760392481531 10.8867910660421 10.3505117546203 9.5802212914345 9.47240145698735 8.7303065600537 8.88165707846598 10.1381767148817 9.8702971020607 10.1315571908486 9.94699212295474 9.70414634583156 9.54407714097724 9.45230114816176 9.47243028549186 9.34348799468837 0.11497831321546 0.114749350530008 0.110688110049546 0.110034131941421 0.120570817779405 0.122992198684629 0.112184846050674 0.118215922731887 0.153364060251303 0.121135083182556 0.117681676067248 0.110650512835598 0.114249652788318 0.113929326938332 0.110238720878735 0.114646251289048 0.127841060574263 0.128564499647770 0.111220976321029 1 1 + 28463029 28464074 28463488.727 28462443 28464515 + gene protein_coding_gene FALSE TRUE AT1G75800.1 pathogenesis-related thaumatin family protein similar to pathogenesis-related thaumatin family protein [Arabidopsis thaliana] (TAIR:AT1G20030.2); similar to Thaumatin, pathogenesis-related [Medicago truncatula] (GB:ABE77925.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.63595048643591 6.71274168134990 0.000120476827004247 0.781171746295536 8.11904498586146 19.3791716700187 0.63595048643591 0.0960876632327589
AT3G23810_at 7.41657045670965 7.67762448192105 6.45359425926382 6.7414818093412 6.3807828465088 6.07711402236591 10.0340674380290 10.4471892100284 8.62138831472948 8.98668573258676 10.2343597670630 10.6368876392061 9.21734816465878 9.59107223291607 10.7057727687547 9.80268031112184 8.55608851944943 9.74690917414432 8.5068591841832 0.229574648244837 0.222709963117956 0.257072888549724 0.245030132543499 0.247328438396676 0.259100919744923 0.227711124793033 0.22390097323312 0.226338846939640 0.221655145243584 0.220216580176280 0.220250449473081 0.222408742947955 0.222491079487416 0.219676949136884 0.218389330532325 0.229274001274571 0.216984108090061 0.227558675078624 3 3 - 8588046 8588578 8588311.182 8587671 8589720 - gene protein_coding_gene FALSE TRUE AT3G23810.1 SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2); adenosylhomocysteinase Identical to Adenosylhomocysteinase 2 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 2) (AdoHcyase 2) (SAHH2) [Arabidopsis Thaliana] (GB:Q9LK36;GB:Q8LPS8;GB:Q944K5;GB:Q949Z9); similar to HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT4G13940.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P35007); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Cytokinin binding protein CBP57) (GB:P68172); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P93253); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043) -0.687103791985479 -6.71133832393403 0.000120658404067312 0.782228433568383 8.11787932556707 16.9117368485197 -0.687103791985479 0.111336543894966
AT3G18990_at 6.87314900164255 7.24441731361902 6.90585765755472 7.06986976047621 8.0139313174783 7.38904864531206 5.89400609550563 5.8925226849718 5.3160155512629 5.29437110245103 5.91266870685523 5.88546598644992 5.92206846104303 5.73849782201036 6.07413268213676 5.95395013217654 6.2247234517044 5.56070228050677 5.22208760945526 0.211123637355676 0.203926808711346 0.203549923073842 0.204980235741907 0.203338449870612 0.213291228814967 0.203628502626865 0.204439346500591 0.213739107249085 0.200870183460636 0.204386619430205 0.199057453080466 0.199057453080466 0.20376544153632 0.205785309538474 0.200886861925077 0.203626716046962 0.203772985519314 0.199057453080466 3 3|0 -|/ 6549089 6549941 6549485.3 6548875 6551859 - gene protein_coding_gene FALSE TRUE AT3G18990.1 VRN1 (REDUCED VERNALIZATION RESPONSE 1) Required for vernalization. Essential for the complete repression of FLC in vernalized plants. Required for the methylation of histone H3 similar to RTV1 (RELATED TO VERNALIZATION1 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G49480.1); similar to reduced vernalization response 1 [Brassica rapa] (GB:AAR92199.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.750093920287275 6.70986778255338 0.000120848996907866 0.78334319795679 8.11665755080952 12.5036091152784 0.750093920287275 0.128948450056368
AT4G01290_at 6.94633623011289 7.24110521787227 7.567713902441 7.58195501448658 8.19742895323525 8.06967060288567 7.21272447402515 7.47721749200856 6.33733568587729 6.49600002212598 6.74816962552537 6.7747133046763 7.25462703829006 6.93901476906145 6.57136767322436 6.94182571985239 6.90439844777953 6.84159450661256 6.30684871443698 0.196913493162020 0.192015573327019 0.189407037513986 0.194716373706112 0.201262682849247 0.194157213198782 0.191123801992543 0.191669805461994 0.198670188642265 0.201470470475611 0.189448323105106 0.187759360400308 0.187759360400308 0.195427050857015 0.189946998015452 0.192496760015608 0.191423425157067 0.190531930103194 0.200837863046338 4 4 - 538218 542300 540299.947 538090 543869 - gene protein_coding_gene FALSE TRUE AT4G01290.1|AT4G01290.2 similar to unknown [Oryza sativa] (GB:AAF00138.1); similar to Os06g0105900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056560.1) 0.563374338119204 6.70925700640625 0.000120928255234705 0.783736022176122 8.11615000439483 14.1627816657707 0.563374338119204 0.072056088138507
AT2G34357_at 5.42367716531416 5.82234718846729 5.30158540054535 5.39452015914314 4.67163244419890 4.51854407957996 5.92200056062796 5.53188462177851 4.29292865327737 4.63207173364967 3.78246095867455 3.92673228766081 3.98734438335781 3.67098437892783 4.21283283600963 4.18665892553247 4.35805100743289 3.70370994953721 4.81784131635338 0.243798862704479 0.258507893283692 0.240620709560869 0.240888286759753 0.254968782699798 0.256559760392562 0.245842879586712 0.247623839020739 0.276083831029383 0.244942998194236 0.238219684210408 0.242147386359997 0.247654872301429 0.244840446238251 0.246728584117971 0.239622342065007 0.250200616676651 0.248468589278301 0.238219684210408 2 0|2 /|+ 14512058 14512542 14512272 14506315 14512806 + gene protein_coding_gene FALSE TRUE AT2G34357.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G23540.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57583.1); similar to Os02g0782100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048314.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Domain of unknown function, NUC173; (InterPro:IPR012978) -0.652878628357649 -6.70790782138691 0.000121103537054021 0.784750920110054 8.11502865655048 9.60304599011614 -0.652878628357649 0.101381257811252
AT2G31350_at 8.91498642119385 9.04038091982793 9.54606622043078 9.60923290258475 9.82181320495271 9.78849257534084 8.89962015865126 8.68669867996019 8.50389430933155 8.17912961572846 8.53672584113164 8.00654366718432 8.5102153862798 8.43498954803934 8.08332878896483 8.73603298382053 8.99310233943183 8.54340281044206 8.18770570480711 0.123213583684446 0.120667200312805 0.123941860063049 0.121928105105444 0.127767550562723 0.122328779813478 0.11835519500861 0.126688652077979 0.125579250853711 0.129630371569027 0.130805809315103 0.128167652290662 0.124592393825574 0.131170764671097 0.128918439394304 0.12260364613385 0.132626230661474 0.124831869321741 0.120271217028343 2 2|0 +|/ 13376547 13377812 13377403.889 13375369 13378134 + gene protein_coding_gene FALSE TRUE AT2G31350.1|AT2G31350.2 GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding|GLX2-5 (GLYOXALASE 2-5); hydroxyacylglutathione hydrolase Encodes a mitochondrial glyoxalase 2 that can accommodate a number of different metal centers and with the predominant metal center being Fe(III)Zn(II). Identical to Putative hydroxyacylglutathione hydrolase 2, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) [Arabidopsis Thaliana] (GB:Q9SID3;GB:Q3EBQ9); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.1); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|Identical to Putative hydroxyacylglutathione hydrolase 2, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) [Arabidopsis Thaliana] (GB:Q9SID3;GB:Q3EBQ9); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.2); similar to putative mitochondrial glyoxalase II [Cicer arietinum] (GB:CAC10212.1); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.498139570812522 6.70360804357208 0.000121664017393530 0.788261168692682 8.1114532005122 17.6738043256765 0.498139570812522 0.0445122803274093
AT1G48100_at 5.06033897740848 5.35377361188955 4.82985752559151 4.85373063810103 4.99301523000253 5.41004912415317 5.49066995983261 5.60375840030351 2.87566733524081 4.04569654554452 5.31885288762029 6.23583471057386 5.88368595748316 5.14189708703064 4.55057699116636 4.98999491706137 5.55456413099184 5.23394912125098 4.40069328579996 0.215416250938690 0.215416250938690 0.217292743601323 0.22039701074561 0.21934160775473 0.220346729564130 0.219376464563244 0.234505293688464 0.256075236901013 0.217341356020567 0.217309947223810 0.215416250938690 0.215416250938690 0.225897187915246 0.223820615571115 0.215416250938690 0.227369318418217 0.229883742953247 0.220359583953942 1 1|0 +|/ 17772022 17773219 17772884.2 17770543 17773620 + gene protein_coding_gene FALSE TRUE AT1G48100.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G02460.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98503.1); similar to Os05g0279900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055086.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.617089155986204 6.702239401674 0.000121843019319032 0.789299079148688 8.11031454444181 9.76824344887317 0.617089155986204 0.0904829469459921
AT2G03820_at 6.93105446278742 7.1910183640796 6.65582227495662 6.54883773992876 6.91664669545362 6.76477456707448 7.2795709817021 7.42584773519909 7.11697884089952 6.79082673573897 6.72152679025071 6.3132500886807 6.32288923268077 6.39800091990573 6.31071146208211 6.22573813374481 6.31679582492234 6.51337042583571 7.00602075016154 0.180320076858137 0.187221003466626 0.179009389068413 0.178814317471791 0.179068274183233 0.182592626990687 0.176709933637834 0.17439581162116 0.194324797807028 0.184310052363870 0.180429302980434 0.17439581162116 0.180840559393543 0.181041497500087 0.176127948086676 0.177601261833166 0.186805775474765 0.176151113346155 0.188569273081822 2 2 - 1165152 1165707 1165498.091 1164954 1167026 - gene protein_coding_gene FALSE TRUE AT2G03820.1 nonsense-mediated mRNA decay NMD3 family protein similar to NMD3 family, putative [Medicago truncatula] (GB:ABE90145.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain NMD3; (InterPro:IPR007064) -0.533171324546244 -6.69637045647843 0.000122613897734361 0.794170215625457 8.10542869286657 13.6449770036625 -0.533171324546244 0.0608131306937873
AT3G48100_at 5.82435148272985 6.24783620010798 4.78418299892463 4.85820989091679 5.98534543272222 6.07000497328295 4.98912251347519 5.23652903581337 5.12312903652544 4.91619384538533 7.26400933434094 7.82502150308124 6.76497571329652 6.7585556062225 7.78025248562752 6.32587958229499 4.97066951029693 6.17071130581721 6.07361962572504 0.236714442346510 0.230577413434276 0.244258050756081 0.242892608267522 0.227183947513813 0.233995074487354 0.236258188249463 0.233516984034234 0.243373467675594 0.239896032480915 0.232707093461412 0.227048544112251 0.249511779484613 0.24199895616903 0.234639017852249 0.226287024345068 0.238169358514035 0.224929609386307 0.235631574199251 3 3 - 17770104 17771694 17771270.182 17769412 17771859 - gene protein_coding_gene FALSE TRUE AT3G48100.1 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5); transcription regulator/ two-component response regulator Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Identical to Two-component response regulator ARR5 (Response reactor 2) (ARR5) [Arabidopsis Thaliana] (GB:Q9SB04;GB:O80364;GB:Q9SBH9); similar to ARR6 (RESPONSE REGULATOR 6), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT5G62920.1); similar to Response regulator receiver [Medicago truncatula] (GB:ABE82371.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.605752280086839 6.69373977153016 0.00012296117446237 0.796296565818307 8.10323702433879 11.5511929239970 0.605752280086839 0.0870787461583532
AT2G22400_at 8.7005358713698 8.73888615913008 8.44498583412036 8.17057636241941 8.811956489546 8.6634300932708 7.38844317068737 7.57612512018507 6.27983659556 6.14989375408124 6.7417441473781 7.28215091309153 6.67359835423527 6.6876347719588 7.0895175666939 7.18684660584212 7.30665406237625 7.10127650250141 6.62828687224566 0.199438909177035 0.198887217274220 0.205647858954211 0.205786509816613 0.198428570666932 0.204701284392162 0.198428570666932 0.205331650769643 0.207160700026848 0.205657302482889 0.198528817219160 0.198428570666932 0.201906339637596 0.205050898113911 0.20443960824497 0.201637819377128 0.203154181520391 0.211915593001887 0.199190690526393 2 2 - 9511913 9512539 9512264.818 9511739 9515955 - gene protein_coding_gene FALSE TRUE AT2G22400.1 NOL1/NOP2/sun family protein similar to NOL1/NOP2/sun family protein [Arabidopsis thaliana] (TAIR:AT4G40000.1); similar to tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) (ISS) [Ostreococcus tauri] (GB:CAL56514.1); similar to Os09g0471900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063445.1); similar to Os08g0484400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062081.1); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) 0.53887253635505 6.68893437288978 0.000123598331154180 0.800299194223314 8.09923093614058 14.9925425239938 0.53887253635505 0.063361621981628
AT3G22060_at 7.64858299921983 8.39584476939848 6.07033619369392 6.18040944863691 6.96491090639117 6.11685937710999 6.0276206873277 6.27332737550282 6.93175297107426 5.7732227381316 4.94580172612357 6.8977162065965 5.22058111224063 5.70764052761721 5.39386872415247 6.38855418913877 3.86968929491106 4.6440777787021 7.38017456040526 0.271953360266912 0.278297481347447 0.262510046250484 0.265223142615289 0.260938253199651 0.274477963946821 0.262678435765634 0.266677884753580 0.267902132910724 0.260704256917278 0.278414534531115 0.262003327764782 0.271021700596560 0.262637838252865 0.262254239651719 0.260704256917278 0.283740596887601 0.269937350480974 0.260704256917278 3 3|0 +|/ 7771240 7772120 7771802.3 7771023 7772347 + gene protein_coding_gene FALSE TRUE AT3G22060.1 receptor protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069, however this protein does not have the protein kinase domain similar to receptor-like protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G58310.1); similar to Os07g0537000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059871.1); similar to putative receptor-like serine-threonine protein kinase [Solanum tuberosum] (GB:CAC83606.1); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902) -1.03238693566965 -6.68728675101437 0.000123817627553903 0.801595320783971 8.09785659048005 12.7490071120629 -1.03238693566965 0.201077265718277
AT1G79500_at 5.9089053594845 5.93591905982159 5.1105664840968 4.89628284838625 5.44548290807792 5.48619666116508 5.10738759616349 5.05925834942568 4.64555057545885 4.87503049280791 5.91260005890299 6.55995991652339 5.82244512174521 5.96882674292469 6.92675108425526 5.54074136294532 5.67141680427645 5.87721387340422 4.86751965828419 0.204907847595073 0.201949676322392 0.207121660951169 0.208455195914419 0.20667760276673 0.205054075445406 0.206418348026307 0.209878188706385 0.223428384373215 0.206801086407493 0.20665804806349 0.203992603896256 0.211463347408253 0.212568428403819 0.212793815623475 0.207117442567041 0.212148666923911 0.203710483666487 0.208350281246035 1 1|0 +|/ 29909438 29910840 29910343.857 29908319 29911452 + gene protein_coding_gene FALSE TRUE AT1G79500.1|AT1G79500.2|AT1G79500.3|AT1G79500.4 AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1); 3-deoxy-8-phosphooctulonate synthase Encodes a protein with 3-deoxy-8-phosphooctulonate synthase (KDOP synthase) activity which is involved in the biosynthesis of KDO, a component of cell wall rhamnogalacturonan II. Identical to 2-dehydro-3-deoxyphosphooctonate aldolase (EC 2.5.1.55) (Phospho-2- dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8- phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) (AtkdsA) (KDSA) [Arabidopsis Thaliana] (GB:Q9AV97;GB:Q8L890;GB:Q9SAJ9); similar to ATKDSA2/ATKSDA [Arabidopsis thaliana] (TAIR:AT1G16340.3); similar to 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) (GB:O50044); contains InterPro domain 2-dehydro-3-deoxyphosphooctonate aldolase; (InterPro:IPR006269); contains InterPro domain DAHP synthetase I/KDSA; (InterPro:IPR006218) 0.485362714656453 6.6668174069371 0.000126578046709346 0.819339696349594 8.08074894421497 10.7842638813972 0.485362714656453 0.0389358574474333
AT4G20830_at 7.60299404883304 8.09061228536907 8.39823278952539 8.5219780665724 7.53673863301583 6.94824637604026 5.92712795390953 6.27337124551213 6.86076002966715 6.53965216424077 7.96541542919372 8.66315027694074 6.09685812116723 7.70367621125952 7.04237809747796 6.72354937073824 5.50501395974393 7.38253644562899 5.771006435035 0.216663339455234 0.22621561277453 0.223300330071426 0.226406971365795 0.216663339455234 0.22562065896022 0.228334076696391 0.22846229029516 0.238506225880742 0.221253483309809 0.216663339455234 0.220052824022201 0.224249226318825 0.231821753995207 0.219336052253899 0.223308076075651 0.244044796568217 0.227396335749944 0.220697027443895 4 4 + 11156539 11157056 11156735.636 11155464 11157817 + gene protein_coding_gene FALSE TRUE AT4G20830.1|AT4G20830.2 FAD-binding domain-containing protein Identical to Reticuline oxidase-like protein precursor (EC 1.21.-.-) [Arabidopsis Thaliana] (GB:Q9SVG4;GB:Q3E9Y2;GB:Q8H7B5); similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20840.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30740.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90038.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90036.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) 0.811310972793506 6.66062674910933 0.000127426171047191 0.824702179017423 8.0755627999595 14.1753102325138 0.811310972793506 0.146769535756748
AT1G16840_at 8.78976829329833 9.00818794401498 8.785602424274 8.95990461489404 9.60174738959185 9.07106336678792 8.30748472113256 8.12053504830647 7.98513777129199 7.5357997264979 8.34184278059138 7.97585704175088 8.2514627268468 8.46428517068995 8.33537054198451 8.5030307266385 8.55516920734153 8.50681026109802 7.18636067075175 0.180554008805994 0.187193591418137 0.191707493123516 0.175720794486950 0.193480104237232 0.194003323371920 0.176189915160520 0.186093956253762 0.187590016805076 0.193282574771612 0.185303954091086 0.178776474698155 0.182853273331668 0.188188118788766 0.188251574394053 0.176994500344070 0.191833401474521 0.177625332051833 0.189417414060289 1 1 - 5763122 5763863 5763673.727 5762687 5764066 - gene protein_coding_gene FALSE TRUE AT1G16840.1|AT1G16840.2|AT1G16840.3|AT1G16840.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78890.1); similar to At1g16840/F17F16.27-related [Medicago truncatula] (GB:ABE84583.1) 0.672857307401345 6.6599809108134 0.000127515010658595 0.82514963397177 8.07502143078469 16.7984506986033 0.672857307401345 0.108716916203127
AT2G27710_at 9.92873761122116 10.0221857760682 9.57664213404424 9.63612197175574 9.1066518311182 9.20627008357526 10.1161758319787 10.3134091463802 9.94844277195484 9.82775670574846 9.49982178369222 10.0990327558972 9.11484652169008 9.4486722338538 10.3343165158662 9.3534552757174 8.99336410334125 9.28534075856665 9.58063528625917 0.148168353274383 0.147625757055984 0.148405353418415 0.148879841328429 0.142639823630275 0.156521265130535 0.137665921753503 0.148240972945170 0.154588911425145 0.144412892122806 0.142929519756934 0.141923573871603 0.150646662088318 0.152094235697694 0.151207296894222 0.145339764315847 0.155758782269413 0.153435715589832 0.148517802169781 2 2 + 11824007 11824447 11824149 11823849 11824944 + gene protein_coding_gene FALSE TRUE AT2G27710.1|AT2G27710.2|AT2G27710.3 60S acidic ribosomal protein P2 (RPP2B) Identical to 60S acidic ribosomal protein P2-2 (RPP2B) [Arabidopsis Thaliana] (GB:Q9SLF7;GB:Q8LB03); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acidic ribosomal protein-like protein [Solanum tuberosum] (GB:ABA40434.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.491605465349055 -6.6593748982938 0.000127598433890920 0.825561867274249 8.0745133891638 19.3891332140505 -0.491605465349055 0.042774683788418
AT4G14930_at 9.13332343396616 9.09181783596116 9.43094467525256 9.41080497518954 9.79703405313555 9.69573748170555 9.21792911727022 9.1482503666201 9.3137674527505 9.45983825779946 9.9800424158776 9.5757091491373 9.85025448971917 9.76940632584137 9.6098819145459 10.0842199727040 10.2130412829742 10.0521859451967 9.43658742064028 0.101289653207275 0.096479515676949 0.102899714209516 0.0963915837952377 0.094467104706142 0.099007513102463 0.0981703631699393 0.0978831181210053 0.102798089956532 0.0986326875272641 0.0988985294324789 0.0951797102046444 0.0967342718955434 0.0995957333138899 0.094848635849087 0.093973022489322 0.097707327096646 0.0971903892198113 0.0978072902671182 4 0|4 /|+ 8540172 8541164 8540627.667 8538582 8541895 + gene protein_coding_gene FALSE TRUE AT4G14930.1 acid phosphatase survival protein SurE, putative similar to acid phosphatase survival protein SurE, putative [Arabidopsis thaliana] (TAIR:AT1G72880.1); similar to Survival protein SurE [Medicago truncatula] (GB:ABE91728.1); contains InterPro domain Survival protein SurE; (InterPro:IPR002828) 0.462122542234583 6.65340228716535 0.000128423836945321 0.830773801199283 8.06950343194716 19.0133504410857 0.462122542234583 0.0227252112768740
AT3G62550_at 12.8218303351665 12.9735980476774 12.9303741681860 12.8117148179897 13.2106233787753 13.2859246513400 12.2214995342030 12.3517988649805 11.631112384597 12.0048188210361 11.8354243427746 12.0179858002037 12.894509185328 12.5194693538925 11.3705655847566 12.1396869173710 12.8565254413106 12.1044166765205 11.4771276244634 0.102946040669539 0.100951091938331 0.102300666569642 0.106470699697691 0.114238333294280 0.104551661428313 0.101501277009553 0.101126481523461 0.105340077696342 0.0997119604442026 0.110697755134879 0.105104180574322 0.0997119604442026 0.0997119604442026 0.112811396360752 0.102676950647443 0.103764433275681 0.101387171780293 0.105229975880656 3 3|0 +|/ 23147229 23148007 23147638.222 23146960 23148149 + gene protein_coding_gene FALSE TRUE AT3G62550.1 universal stress protein (USP) family protein similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to universal stress protein family [Medicago truncatula] (GB:ABE78101.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.49022376398503 6.65227623508035 0.000128580111928676 0.831656163954675 8.0685582830861 24.7867584028574 0.49022376398503 0.0423052919700023
AT2G19730_at 10.5581725147061 10.6035196224494 10.1135824568097 10.0865658120160 10.0501550881561 10.0126780636664 10.6892209415506 10.7187581765177 10.1033942565293 10.2936563577455 9.81134908734755 10.2090761104482 9.70847316228481 9.63799098274906 10.4806434879972 9.48603914491277 9.5764464773263 9.70459144443522 10.0751743785219 0.083844584941251 0.0838466115881531 0.089108589568058 0.0861547497183323 0.0853006477761894 0.0862459116869813 0.0845277965153299 0.0822950124598898 0.0900889630478492 0.0858441472218834 0.0829706535445973 0.0826473703775276 0.086935292050841 0.0935580644908866 0.092842955033489 0.0820195581771398 0.087112370537584 0.08425981987828 0.0851277108520797 2 2|0 +|/ 8518936 8520038 8519649.9 8518589 8520303 + gene protein_coding_gene FALSE TRUE AT2G19730.1|AT2G19730.2|AT2G19730.3 60S ribosomal protein L28 (RPL28A)|structural constituent of ribosome Identical to 60S ribosomal protein L28-1 (RPL28A) [Arabidopsis Thaliana] (GB:O82204); similar to 60S ribosomal protein L28 (RPL28C) [Arabidopsis thaliana] (TAIR:AT4G29410.2); similar to unknown [Solanum tuberosum] (GB:ABA46763.1); contains InterPro domain Ribosomal L28e protein; (InterPro:IPR002672) -0.453627276194243 -6.65196601268504 0.000128623201727118 0.831806245569273 8.06829786573929 20.3461988685439 -0.453627276194243 0.0123139488617724
AT4G17900_at 8.90976236563088 9.12918423511034 9.51211693939963 9.45022786567152 9.36771977367205 9.17124036402804 7.48764244016356 7.43162538686697 6.70219137443947 7.52448502031493 6.86351155528924 6.72710870010018 7.02286895834089 7.14136420316681 6.31871521468843 7.44853574595317 7.47116514092617 6.53532336942531 6.9346997306156 0.227788093969913 0.239100401091222 0.24634041160455 0.234504106963704 0.244616926996065 0.237363194953272 0.227090073805931 0.239665030415845 0.243606702040132 0.229073247449376 0.226937839625039 0.227438087889786 0.240170015964253 0.246151953276048 0.247036020487279 0.229623199721618 0.237704020251017 0.248660792079856 0.231727474332880 4 4|0 +|/ 9946831 9947685 9947200.571 9945883 9948091 + gene protein_coding_gene FALSE TRUE AT4G17900.1|AT4G17900.2 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G32700.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734)|similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G32700.2); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 0.511527348973073 6.6511258463402 0.000128739980331025 0.832432712820408 8.06759251338846 15.804872997706 0.511527348973073 0.0529779890826097
AT2G22360_at 6.82972079645076 6.76366193435409 6.93073615238127 6.98148344897296 6.60144996750397 6.15249064564555 8.53611768630426 8.50723420349038 6.7503341914089 7.00557311587016 6.35059716224028 6.45005010425915 6.61736955265978 6.21069333872161 6.47861660517244 6.82243122673348 6.86938488734573 6.15284427920676 6.21602813710825 0.221283204255227 0.222842588806019 0.222510563017258 0.22458053702814 0.223329563982739 0.233874650400066 0.22309042776847 0.220476427064895 0.225365294732967 0.227547724388959 0.225468615129663 0.225244672299045 0.223513065599631 0.225391214148494 0.224237951523743 0.219532415671437 0.240298802711907 0.230781563602392 0.220997143101504 2 2 + 9506960 9507352 9507116.909 9504675 9507695 + gene protein_coding_gene FALSE TRUE AT2G22360.1 DNAJ heat shock family protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT4G39960.1); similar to Os05g0333500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055227.1); similar to DNAJ homologue [Oryza sativa] (GB:BAB70509.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.577978510888648 -6.64567655714217 0.000129500238177042 0.837219039814577 8.06301508386207 13.738516959057 -0.577978510888648 0.0791784735846833
AT1G14140_at 5.95133956041894 5.7119711973118 4.92449935385807 4.67242645864288 5.48590384306837 5.00147303612591 6.0891596654032 5.9077394046518 5.55439460143138 5.42179331383131 4.95587742162592 5.46407234382252 4.87392903657854 5.21256253310985 4.89647023139915 5.12263716022155 5.5454074754196 5.2847720460231 5.85955932920484 0.25327579029836 0.253867765058626 0.25257714086472 0.258206069143369 0.251725744902102 0.251816951098941 0.251756789375353 0.258572654252671 0.266400108225527 0.249657420782511 0.252617730843285 0.251275736181111 0.251549573658241 0.256974078250693 0.250834341657737 0.249657420782511 0.258564836566195 0.253751528358273 0.252735308447799 1 1 - 4838129 4839257 4838526.364 4837924 4839630 - gene protein_coding_gene FALSE TRUE AT1G14140.1 mitochondrial substrate carrier family protein similar to ATUCP2 (UNCOUPLING PROTEIN 2), oxidative phosphorylation uncoupler [Arabidopsis thaliana] (TAIR:AT5G58970.1); similar to Mitochondrial carrier protein [Solanum demissum] (GB:AAT66766.2); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) -0.668213250576725 -6.64303603989288 0.000129870404427943 0.839482294222223 8.06079545316264 10.8587549545256 -0.668213250576725 0.107854085797025
AT4G30400_at 4.10678850564263 4.35940924823263 3.50737266703755 3.74398168298560 3.74976358266293 4.24904346565355 5.32725481617703 5.47835784370628 6.13278305861024 5.63973552387857 5.55778836653264 5.81629583518732 5.18477996575567 5.63145900484427 5.59759533809928 5.46735293443936 5.08702666929533 5.46547368619967 5.65461128247304 0.214557404967125 0.214439991532939 0.224723115540893 0.214665796878415 0.21143059008238 0.210566546429513 0.207380604050467 0.215878021877809 0.220340720598242 0.216101361274271 0.207336549737377 0.210992738909023 0.207336549737377 0.207336549737377 0.210349015060705 0.207336549737377 0.213204819984858 0.217316323035475 0.209449507849826 4 4 + 14868051 14868454 14868250 14866952 14868634 + gene protein_coding_gene FALSE TRUE AT4G30400.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL4K (RING-H2 finger protein ATL13) (ATL4K) [Arabidopsis Thaliana] (GB:Q940Q4;GB:Q9M0C0); similar to MEE16 (maternal effect embryo arrest 16), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G18650.1); similar to RING finger 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36516.1); similar to Os08g0445000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061924.1); similar to Os02g0790600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048356.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.66924203356558 -6.63696280104921 0.000130726216394217 0.844883536555826 8.055686335666 9.95775385819468 -0.66924203356558 0.108337415553407
AT3G14595_at 11.0241584303613 11.0971026440339 11.6314872525719 11.7237362643531 11.9945636170227 11.7814657254049 11.7652657553705 11.6599969077486 11.1149671715048 11.0807928497252 11.8507935863798 11.3482265204221 11.9428004004671 11.8603920670471 11.2041507674894 11.6634349121775 11.9757434233951 11.5366894580894 11.0377706633635 0.0764599246773827 0.0735332284352749 0.0757575372655547 0.0721479580520968 0.072270313429131 0.0735240511959138 0.0723855552698566 0.0751332302713828 0.0749800960837534 0.0723912033770198 0.0727250622040574 0.0720705128298429 0.0717263592748121 0.0717263592748121 0.0750145141290563 0.0717263592748121 0.0785530307880498 0.0742354228602574 0.0751561680682194 3 3|0 +|/ 4909119 4910186 4909904.429 4908957 4910483 + gene protein_coding_gene FALSE TRUE AT3G14595.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os05g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056334.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.495558805430915 6.63330814662504 0.000131244199960523 0.848100020144896 8.0526092154785 22.9600333013407 0.495558805430915 0.04589146707197
AT1G80310_at 7.99280679503285 8.18927410486834 8.35272197276342 8.52066961838721 8.7138212596216 8.66139737844393 7.87350559334051 7.79988003383727 7.38484525797029 7.7144742921879 7.67615093549668 7.80128601557302 8.31944523342514 8.04625066778267 7.5513335367796 8.46415842096222 8.31961636980646 8.1877986985951 7.84301197121586 0.139910785680987 0.134737819312640 0.138175471186364 0.142749392005580 0.137411588768989 0.142487361174576 0.136454837848706 0.145964872476575 0.144014865663450 0.152390205845643 0.151530789621759 0.139830232353449 0.134790003934947 0.136926359563896 0.149639850557109 0.143943333902976 0.141592482638757 0.14151405636132 0.138853883488158 1 1 + 30200653 30201194 30200911.273 30199510 30201446 + gene protein_coding_gene FALSE TRUE AT1G80310.1 sulfate transporter similar to sulfate transporter [Arabidopsis thaliana] (TAIR:AT2G25680.1); similar to putative sulfate transporter [Brassica napus] (GB:CAC39421.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547) 0.498298534939446 6.63068715759199 0.000131617068806200 0.85037788155686 8.05040119185144 16.1096090071672 0.498298534939446 0.0473850094168853
AT3G12080_at 8.98492668056815 8.92857209634011 8.41585991175974 8.09768468881741 8.58621600806596 8.24542021754802 8.75366656452276 8.3427560590296 8.33338838423708 9.04229185371338 7.52232237496516 8.06713180038391 7.72118068809279 7.61178594202092 8.22069692075652 8.3848272650015 8.09227311603665 7.68091916333567 9.1169920568006 0.143953246288688 0.143211201596649 0.147017037833778 0.1480186630839 0.143211201596649 0.147347110317536 0.147848594616486 0.145758235355374 0.162792703656559 0.145458690345305 0.171750935342333 0.145256978632098 0.154362727573080 0.156818737641409 0.150552942950265 0.145736200040218 0.148137041932691 0.153211865200644 0.145035694325201 3 3 + 3851226 3851935 3851514.455 3847798 3852144 + gene protein_coding_gene FALSE TRUE AT3G12080.1|AT3G12080.2 EMB2738 (EMBRYO DEFECTIVE 2738); GTP binding|EMB2738 (EMBRYO DEFECTIVE 2738) similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G39960.1); similar to small GTP-binding protein domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94923.2); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain GTP-binding; (InterPro:IPR005289) -0.667216874830129 -6.62857228863454 0.000131918784720847 0.852195349296669 8.04861879928292 16.9161542402020 -0.667216874830129 0.107989511079191
AT4G09350_at 7.12620455568588 7.20889259839257 7.72008238808623 7.72483877398264 7.14450979381112 7.26492126967393 9.4961979247684 9.29208465125224 8.163749536352 8.9396957364459 8.48048394950141 8.30988283551625 8.01800522055981 8.3338147541797 8.24867150429691 8.96606658737689 8.5567655050991 8.29159592509552 8.58938809457002 0.223456087572473 0.213188097259318 0.219193637346837 0.217774677788319 0.205736565012438 0.210857618617810 0.212270786471224 0.20804913055561 0.226796827807265 0.199185171159221 0.199185171159221 0.210290186750635 0.203002775572247 0.213566462896855 0.204088099613119 0.203020127124759 0.208971897753171 0.221224909876766 0.20405744281976 4 4 - 5931352 5931941 5931675.273 5931248 5932149 - gene protein_coding_gene FALSE TRUE AT4G09350.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G80030.2); similar to Os11g0216100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067508.1); similar to DnaJ family protein [Synechococcus sp. JA-3-3Ab] (GB:YP_475458.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.49043694002787 -6.62686625885388 0.000132162728082517 0.85363906068498 8.04718048813075 16.3546857816195 -0.49043694002787 0.0434436448567775
AT2G15310_at 7.18008237363283 7.25912495562563 7.90068389337502 8.09485708291314 7.9526004555661 8.17538965669487 6.96258843243028 7.17579701670309 4.84985173777027 5.3158040774795 5.02597582021185 4.22741777729991 5.32933818216056 4.96614856475093 4.17786907042337 5.76408388298691 6.35537204793058 5.14902576864698 4.64818825731418 0.224291214054657 0.219058714983571 0.219561895870195 0.218780515746758 0.226108084599094 0.221721989515277 0.223093335288406 0.222804185579221 0.220437441993431 0.218510158400456 0.218209203122126 0.219659013198141 0.223746233527636 0.220234197910770 0.218697563119 0.217720941306657 0.225750357601797 0.221878392439590 0.221649174507979 2 2|0 +|/ 6661113 6662236 6661864.1 6660873 6662583 + gene protein_coding_gene FALSE TRUE AT2G15310.1 ATARFB1A (ADP-ribosylation factor B1A); GTP binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor (GI:861205) (Chlamydomonas reinhardtii), other ARFs and ARF-like proteins. Identical to Probable ADP-ribosylation factor At2g15310 [Arabidopsis Thaliana] (GB:Q9SHU5); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G10630.1); similar to ATARFA1E (ADP-ribosylation factor A1E), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT3G62290.1); similar to ATARFA1B (ADP-ribosylation factor A1B), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT5G14670.1); similar to ADP-ribosylation factor 1 (GB:P51821); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.536470221326362 6.62291668832194 0.000132729378122955 0.857166323918045 8.04384904255658 12.6188164401123 0.536470221326362 0.0645296420760766
AT3G46970_at 11.5596776189011 11.6793369764688 11.3627573433453 11.3895981193628 11.7123444972639 11.5479926737085 11.3541048508363 11.3309195852564 10.6005688868582 11.0433203680863 11.7660827016750 11.6721692973429 11.5976606128145 11.7602737193162 11.6192078317618 11.3184127616621 11.3061331045114 11.6894638241694 10.3360505161744 0.0698689129049392 0.0661294555255106 0.0712357396466727 0.0689580069491007 0.0681697998210655 0.0693922424280492 0.067719493922279 0.0661294555255106 0.0750357908214387 0.0661294555255106 0.067610416441487 0.0665519102535671 0.0661294555255106 0.0674210301088466 0.0683533208464726 0.0661294555255106 0.0684176512004135 0.0677412684483185 0.068389019705223 3 3|0 -|/ 17312613 17313326 17312966.1 17312379 17317431 - gene protein_coding_gene FALSE TRUE AT3G46970.1 ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2); phosphorylase/ transferase, transferring glycosyl groups Encodes a cytosolic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for branched polysaccharides, such as glycogen. Identical to Alpha-glucan phosphorylase, H isozyme (EC 2.4.1.1) (Starch phosphorylase H) [Arabidopsis Thaliana] (GB:Q9SD76); similar to glucan phosphorylase, putative [Arabidopsis thaliana] (TAIR:AT3G29320.1); similar to Alpha-glucan phosphorylase, H isozyme (Starch phosphorylase H) (GB:P53537); similar to Alpha-glucan phosphorylase, H isozyme (Starch phosphorylase H) (GB:P32811); similar to starch phosphorylase type H [Citrus hybrid cultivar] (GB:AAM29154.1); contains InterPro domain Glycogen/starch/alpha-glucan phosphorylase; (InterPro:IPR011833); contains InterPro domain Glycosyl transferase, family 35; (InterPro:IPR000811) 0.476679479252427 6.6194831827128 0.000133224158304662 0.860228390173205 8.04095100935206 22.6176691608244 0.476679479252427 0.0357129935541583
AT2G30790_at 6.14801222164663 5.84113441556044 5.58708000233535 5.38229081721889 6.98158873471238 6.67847348439288 7.11597507257949 7.04016728248488 7.9220577318658 8.08229389708562 7.54967852946903 7.4288420547911 6.43734261999012 7.49500528112512 7.2920098296928 6.9892751953231 6.96358939364577 7.23019791868885 7.90960680860593 0.189882630835159 0.203049862188516 0.194698660737533 0.212194827054079 0.194111873171380 0.198881854219841 0.193755949157275 0.196989941252025 0.200774875910545 0.188348605797189 0.189843123464714 0.192001403767555 0.197257779866876 0.194356616612546 0.194364536977813 0.185951291046002 0.197756315077115 0.189384484117614 0.191328397731518 2 2|0 -|/ 13126133 13126965 13126553 13126124 13127167 - gene protein_coding_gene FALSE TRUE AT2G30790.1 PSBP-2 (photosystem II subunit P-2); calcium ion binding Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. similar to PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G06680.1); similar to Oxygen-evolving enhancer protein 2-2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (GB:O49344); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.588520432374015 -6.6163948870032 0.000133670924986330 0.862979491711744 8.0383428493801 13.9191212948796 -0.588520432374015 0.0836658494146649
AT1G27400_at 9.22329417842868 9.19840793925399 8.414532626927 8.26147060036235 8.82150469215852 8.5949623175165 9.31224240342595 9.4634533813371 8.9727101110084 8.39063869969546 8.48524595191231 9.11458025569948 8.52895997002616 8.31131922974378 9.25728279472539 8.03072469524382 7.67536779928956 8.04810479937738 8.67192829690697 0.15945607355852 0.159704186112482 0.172322316006169 0.164637546185566 0.162400989135804 0.158299522992838 0.157808291553102 0.160111565347113 0.163308385077140 0.155895837802405 0.154919544019344 0.157137084433815 0.161342422681432 0.160828370412034 0.161324068699079 0.158017360823197 0.169046779757089 0.161988350378513 0.157410833900611 1 1|0 +|/ 9515315 9516164 9515911.125 9515122 9516927 + gene protein_coding_gene FALSE TRUE AT1G27400.1 60S ribosomal protein L17 (RPL17A) Identical to 60S ribosomal protein L17-1 (RPL17A) [Arabidopsis Thaliana] (GB:Q93VI3;GB:Q9FZJ5); similar to 60S ribosomal protein L17 (RPL17B) [Arabidopsis thaliana] (TAIR:AT1G67430.1); similar to ribosomal protein [Petunia x hybrida] (GB:AAL09401.1); contains InterPro domain Ribosomal protein L22/L17; (InterPro:IPR001063); contains InterPro domain Ribosomal protein L22/L17, eukaryotic and archaeal form; (InterPro:IPR005721) -0.511604715952525 -6.61621307785345 0.000133697277598911 0.863015926900969 8.03818926172759 17.4661704621959 -0.511604715952525 0.0542391847080929
AT4G12070_at 8.32668067120873 8.20854850716232 8.0802753514422 8.49468410667451 8.66907013230873 8.1471923006257 6.9237024503627 6.85934468783667 6.86984855478426 6.65044816425484 7.07609418791553 6.9614728515797 7.42605848832462 7.38231621205829 6.85329092571506 7.3070473673222 7.42770839982535 7.35325707484666 6.26204705541351 0.166076481170118 0.168455940916115 0.169643965203962 0.168843111999254 0.166895660496506 0.172972498799737 0.172454736237715 0.175635326090927 0.181212430219269 0.172746626559832 0.163842372038694 0.163882598495827 0.163842372038694 0.165730761411938 0.170203905662200 0.164173677690702 0.168363545981847 0.170397117136739 0.173627641739286 4 4|0 +|/ 7233564 7234238 7233951.2 7231816 7234495 + gene protein_coding_gene FALSE TRUE AT4G12070.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD12897.1); similar to Os02g0717600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047934.1) 0.6987637452922 6.61153234996469 0.000134377703191555 0.867273696398299 8.03423340848586 14.872447415919 0.6987637452922 0.117650219799461
AT1G55910_at 8.6751212211723 8.9891889482475 9.73900172804154 9.70507252532493 8.99607143240086 9.05310767114887 8.46726925516003 8.39118465303616 8.1497060676119 7.96593283404824 7.9540968143269 8.16075801122707 7.96527614880815 8.44171193537324 7.89299205769822 8.28243450078492 8.76305552370513 8.65814843899297 7.80163770934739 0.137648136732418 0.136956733640391 0.135122333257937 0.138058384776920 0.143556033201789 0.13820468434727 0.142040264914243 0.132313107948928 0.147166800165772 0.148734442652445 0.137647971766226 0.135295568834684 0.141959745306942 0.145665221660649 0.148007864960537 0.137184515821781 0.140470961732808 0.137740322010914 0.144512916008421 1 1 + 20910220 20910722 20910520.727 20909799 20911078 + gene protein_coding_gene FALSE TRUE AT1G55910.1 ZIP11 (ZINC TRANSPORTER 11 PRECURSOR); cation transporter member of Putative zinc transporter ZIP2 - like family Identical to Zinc transporter 11 precursor (ZRT/IRT-like protein 11) (ZIP11) [Arabidopsis Thaliana] (GB:Q94EG9;GB:Q9LG21); similar to ZIP2 (ZINC TRANSPORTER 2 PRECURSOR), transferase, transferring glycosyl groups / zinc ion transporter [Arabidopsis thaliana] (TAIR:AT5G59520.1); similar to metal transport protein [Medicago truncatula] (GB:AAR08417.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.517502980843562 6.60947042782988 0.000134678646646764 0.869081306811566 8.03248976693022 17.1206195372501 0.517502980843562 0.0570901348467137
AT2G40600_at 9.47200242822382 9.65423341595038 9.94311526465272 10.0198004728521 9.44912305991726 9.38955773261233 8.40450621218168 8.67305954776996 9.5035056944314 7.84594957594393 8.9103421274911 8.85208583130858 8.61553315263331 9.05185188725164 8.86279499851674 8.92902219120294 8.72599153655943 9.06769859327967 8.1059708666282 0.139431137414736 0.131323683840067 0.134567853221925 0.132567312153501 0.139521916945407 0.138090332199931 0.132774677646597 0.130530138109425 0.137562128944158 0.146517682749863 0.132909759200021 0.134899110885928 0.138515885371352 0.143078920542632 0.142297075038648 0.135521857911308 0.139135776839226 0.130530138109425 0.134808499120689 2 2|0 -|/ 16954142 16955368 16954831.7 16953948 16955639 - gene protein_coding_gene FALSE TRUE AT2G40600.1 appr-1-p processing enzyme family protein similar to appr-1-p processing enzyme family protein [Arabidopsis thaliana] (TAIR:AT1G69340.1); similar to Appr-1-p processing [Medicago truncatula] (GB:ABE88414.1); contains InterPro domain Appr-1-p processing; (InterPro:IPR002589) 0.52061086279486 6.6037982839079 0.000135510341486840 0.87431272327309 8.02768990952997 18.0567033094942 0.52061086279486 0.0586238290049297
AT3G07390_at 8.31395825728508 8.8079585547461 8.56214398352911 8.86792313313542 6.85826671011779 7.66270950221763 7.82842556975067 8.86440637946955 5.50084424168977 5.9998631050205 9.08948779701502 9.3057774375879 8.97456023449008 9.07399536804204 9.22327463122747 8.54093010233689 7.90340083756954 7.24333334594047 5.81229628130556 0.207051219251149 0.208557725426775 0.204585444731646 0.204922321300366 0.217521428393624 0.224630016075488 0.206124733438950 0.206856500721335 0.24451351275742 0.233823912146648 0.205335698652415 0.212540210964257 0.204585444731646 0.214368704691976 0.205395102857227 0.204585444731646 0.221511722680551 0.222520030667568 0.222364340935699 3 3 + 2365838 2366163 2365966.7 2365307 2366502 + gene protein_coding_gene FALSE TRUE AT3G07390.1 AIR12 (Auxin-Induced in Root cultures 12); extracellular matrix structural constituent isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. Identical to Auxin-induced in root cultures protein 12 precursor (AIR12) [Arabidopsis Thaliana] (GB:Q94BT2;GB:O82442;GB:Q9SRS7); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G25290.2); similar to Os08g0524400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062287.1); similar to putative auxin-induced protein [Oryza sativa (japonica cultivar-group)] (GB:BAC75413.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018) 1.21620870093735 6.60274215812517 0.000135665821654325 0.87518021549205 8.02679566904813 15.4408971005888 1.21620870093735 0.248254839559585
AT3G48200_at 9.25979068245592 9.21845717024772 8.99544814968042 8.91641775969284 9.33611542856452 8.83079800469762 10.2220362977861 10.0734125465875 9.52723198327117 10.0706064874797 9.24664310811876 9.16758219415209 9.34673417471855 9.38615162489971 9.11525107965925 9.44748805749793 9.5556237951259 9.22196506217795 9.99780132757288 0.134042725617735 0.133748107769948 0.149745450023886 0.141352986900222 0.133748107769948 0.144405907128682 0.136561209815680 0.138051815541302 0.146913318483261 0.134075857470609 0.135013538265004 0.134007124181533 0.133748107769948 0.137357469674432 0.147755827150345 0.133748107769948 0.145482372525949 0.142420984279847 0.133748107769948 3 3 - 17843936 17844501 17844277.636 17843758 17848499 - gene protein_coding_gene FALSE TRUE AT3G48200.1 similar to Os05g0594500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056507.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93579.1); contains domain gb def: Hypothetical protein At3g48200 (PTHR12326:SF1); contains domain UNCHARACTERIZED (PTHR12326) -0.614006358837289 -6.60239371386679 0.000135717161750012 0.875375693287579 8.0265005985646 18.9446310815399 -0.614006358837289 0.092448933970751
AT3G54840_at 9.7799950883964 9.83691986857938 10.0833274191408 10.1436874405960 10.2000789416213 10.1893010753454 9.47924191103756 9.48483726809335 8.84649755502979 9.11528302691098 9.6025235906225 9.31833321881491 9.55161902931126 9.37993236285535 9.46297290744524 9.46795261786518 9.4435479603811 9.200080462882 9.1426038305719 0.0974614935416707 0.0960263840593194 0.0998154269044992 0.0977888986991892 0.0992119576999958 0.096719736605507 0.0963914315485045 0.10264441057423 0.119974281110688 0.101256196801314 0.101813096905168 0.100315472687518 0.101257942662123 0.104677949269921 0.0998401096577185 0.097726759607311 0.107097627220542 0.106566666187315 0.104157009391489 3 3|0 +|/ 20329872 20331722 20330778.9 20329390 20331979 + gene protein_coding_gene FALSE TRUE AT3G54840.1|AT3G54840.2 ARA6; GTP binding|ARA6 Encodes a novel Rab-like GTP-ase that is localized to the peripheral membrane of the endosome. similar to ARA7, GTP binding [Arabidopsis thaliana] (TAIR:AT4G19640.1); similar to small GTP-binding protein [Mesembryanthemum crystallinum] (GB:CAA06922.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)|similar to ARA7, GTP binding [Arabidopsis thaliana] (TAIR:AT4G19640.1); similar to small GTP-binding protein [Mesembryanthemum crystallinum] (GB:CAA06922.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.451212824875245 6.59668347229883 0.000136561563904621 0.8806855256209 8.02166245325401 19.1312561630728 0.451212824875245 0.0145110573793503
AT2G44640_at 5.32928468515207 5.68490700588853 3.07104995112455 4.1407345510165 3.98411908424831 4.45564656734302 5.1753729166982 5.75350095023361 5.23573144449338 5.10249875032018 4.01631488147906 4.89236699219776 3.89083005444909 4.37897916202373 5.88371335216116 4.95604439440904 3.94636917871113 4.00332198820153 5.35917238643852 0.242595977990430 0.24035997693619 0.244761239764717 0.249787642896623 0.239560484679499 0.249047392923894 0.236193553645727 0.237650450797969 0.252070478234191 0.241821034726837 0.233452967933687 0.234928263550981 0.235082074662566 0.236988842588406 0.241032663851236 0.233894329678597 0.239719965863411 0.242391443829838 0.250339047561715 2 2 + 18425356 18426104 18425745.455 18424319 18426472 + gene protein_coding_gene FALSE TRUE AT2G44640.1 similar to PDE320 (PIGMENT DEFECTIVE 320) [Arabidopsis thaliana] (TAIR:AT3G06960.1); similar to Os01g0251000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042598.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81221.1) -1.15467693884498 -6.59664379285884 0.000136567451669571 0.8806855256209 8.02162881681067 9.56355697773214 -1.15467693884498 0.233928850585599
AT2G46650_at 10.1486669287530 10.3611796046749 9.89093774543207 10.0355946988524 9.77114860489923 9.58018661925691 10.0166440835351 10.1221133419377 7.14692194157874 9.10536413690886 9.903776277586 9.98177589143782 9.46378333705282 9.73521359768864 9.3018815066668 9.48014918146687 9.25003394812363 9.91916622588153 8.49211401298951 0.116295136930382 0.114633959706847 0.121226171374363 0.112595573975057 0.114752778678743 0.126501300749157 0.114530208647172 0.115411097434023 0.144836508078690 0.121342040315562 0.116042404552214 0.113274956511699 0.112595573975057 0.124747122260446 0.115591889171507 0.113988075791469 0.1164357500777 0.125410613816416 0.117690190596080 2 0|2 /|+ 19159072 19159430 19159293.778 19158716 19159670 + gene protein_coding_gene FALSE TRUE AT2G46650.1 B5 #1 (cytochrome b5 family protein #1); heme binding / transition metal ion binding member of Cytochromes b5 similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAIR:AT5G48810.1); similar to cytochrome b5 [Ananas comosus] (GB:AAM28288.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.519327529648633 6.59569923949865 0.000136707689993895 0.88135447739064 8.02082804512269 18.9296118831995 0.519327529648633 0.0583472773735293
AT1G30610_at 8.00935082421508 7.86096256600516 7.55494320951363 7.10666206291153 7.30683666817605 7.40045068495376 7.69242737932409 7.54982372950362 7.87025664938097 7.93896618325349 6.81859321737515 7.41083745004135 7.02774351219057 7.13469872540113 7.60083642381008 7.06790637299915 6.74967854873245 7.24209584835582 7.85338448244075 0.184448718547174 0.178327987823024 0.176829400222956 0.186928724259589 0.179596843638531 0.176490784135678 0.187274104831386 0.176034405405462 0.183677801282210 0.176038966053170 0.187736369509214 0.178707592750858 0.183692004053591 0.178114366329559 0.192193778965886 0.188076799548318 0.181201679210654 0.182328180198772 0.17685623091881 1 1 + 10849870 10850420 10850168 10846658 10850499 + gene protein_coding_gene FALSE TRUE AT1G30610.1 EMB2279 (EMBRYO DEFECTIVE 2279); binding similar to EMB1408 (EMBRYO DEFECTIVE 1408), binding [Arabidopsis thaliana] (TAIR:AT5G67570.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73375.1); similar to Os01g0674700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043842.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.595952488850884 -6.59189304268179 0.000137274404244093 0.884870809757422 8.01759988309106 15.0697244076028 -0.595952488850884 0.0868855829361545
AT3G52870_at 5.68740181609188 5.59963965481095 4.41257750488076 4.36419950348928 4.88925172372061 4.69690254689298 5.72445709245873 5.69933688905319 5.58935532819703 5.64227170950945 5.75331401096445 6.84309804685603 5.81231547493228 5.28865503399944 6.61068538491371 5.90142143434721 4.73333561894693 5.5901669676844 5.82479939323403 0.208019293038867 0.20730978482231 0.219675271039776 0.216323052132231 0.20730978482231 0.215183123119811 0.212269123159022 0.213239844545903 0.211765640061225 0.20730978482231 0.212608532579943 0.20730978482231 0.20730978482231 0.211308779231763 0.21473119426158 0.208070863929094 0.213540777014634 0.214411734300429 0.207826750836455 3 0|3 /|- 19604351 19604954 19604608.9 19604151 19606800 - gene protein_coding_gene FALSE TRUE AT3G52870.1 calmodulin-binding family protein similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT3G13600.1); similar to transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:AAX92763.1); similar to transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:AAX94831.1); similar to Os12g0149900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066163.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.477913761878695 -6.59070579818696 0.000137451704049160 0.885876232596838 8.01659249830281 10.8852705782052 -0.477913761878695 0.0377845582640521
AT1G62040_at 9.56648488901926 9.68492806028308 9.88696050873027 9.870989774797 10.3453866074267 10.1252742030123 9.29963994309784 9.2209793053565 9.58551263885667 9.39245501204877 10.0890539845886 9.69213560584697 9.81622847790739 9.86525674924222 9.74264076045529 10.0084651506773 9.925580357377 9.90685026511925 9.56181142631107 0.0863383829931078 0.0862031113848458 0.0915961566664082 0.0886705538260556 0.087594350157889 0.0885521463116413 0.0896223686684293 0.0893541258927013 0.101999840643336 0.0869820267635255 0.0862031113848458 0.0865657622423079 0.0926002694925007 0.0895604961431469 0.0913027858470749 0.0866962599879503 0.0889335892904558 0.0912578629343893 0.089402490004029 1 1|0 +|/ 22936890 22937890 22937446.5 22936566 22938104 + gene protein_coding_gene FALSE TRUE AT1G62040.1 ATG8C (AUTOPHAGY 8C); microtubule binding similar to ATG8D (autophagy gene 8-related), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G05630.1); similar to microtubule-associated protein 1 light chain 3 [Gossypium hirsutum] (GB:AAQ76706.1); similar to Os08g0191600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061171.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.490830725274332 6.58182251053864 0.000138786324716729 0.894339076474604 8.00904827623231 19.447098467119 0.490830725274332 0.0454316502477611
AT2G39980_at 7.96037312631052 8.2270318542143 8.8193394852696 9.11430920104332 9.07283428992968 8.92497444146827 8.3707495836649 8.69686700148682 7.35181773392261 8.4509214071501 7.51245768416828 7.32047559109638 8.65174094924452 8.16624431453871 7.11354618015552 9.33193250507364 9.36682817351871 8.09274573523264 7.11558670655193 0.17365050725769 0.170030916723072 0.179300714928671 0.174361540060218 0.176634305544238 0.184090778925986 0.179627393093903 0.175340636013168 0.184224921835892 0.177876745789391 0.174482094423141 0.176813247728105 0.179729359257266 0.174552472965051 0.186175427451868 0.173058613856510 0.180855093803231 0.175362800768682 0.182043265245228 2 2 - 16695567 16696062 16695864.455 16694751 16697034 - gene protein_coding_gene FALSE TRUE AT2G39980.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G01210.1); similar to AER [Nicotiana tabacum] (GB:AAM73656.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.612081702714461 6.57660185265515 0.000139577314575784 0.899296637811775 8.00460906552246 16.5652790433418 0.612081702714461 0.0926010825356981
AT3G09920_at 7.7015461636638 7.6180128447808 7.62756764032307 7.55064337335663 7.9959362356923 7.65696445389598 8.27892581559552 8.21528186045559 8.33115535703287 8.5055327473852 7.57671077905592 7.57486599769404 7.44700234088822 8.00745627942942 6.79566369338462 7.87364576934676 7.70482848405709 7.54708296067237 8.29183962596606 0.147044382674278 0.153411313162393 0.157144110720811 0.157852246015868 0.150770325036033 0.146799710354027 0.157839808598348 0.151402639188192 0.145536643742731 0.147039850107220 0.153676126288441 0.159017151869758 0.159443709358943 0.151347248355653 0.161209601438809 0.14753277314966 0.162472074741041 0.150338780832716 0.149954157528388 3 3 - 3040481 3041184 3040876.182 3040308 3044773 - gene protein_coding_gene FALSE TRUE AT3G09920.1|AT3G09920.2 PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE); 1-phosphatidylinositol-4-phosphate 5-kinase Identical to Phosphatidylinositol-4-phosphate 5-kinase 9 (EC 2.7.1.68) (AtPIP5K9) (1-phosphatidylinositol-4-phosphate kinase 9) (PtdIns(4)P-5-kinase 9) (Diphosphoinositide kinase 9) (PIP5K9) [Arabidopsis Thaliana] (GB:Q8L850;GB:Q9SF93); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G10900.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to phosphatidylinositol-4-phosphate 5-kinase [Oryza sativa (japonica cultivar-group)] (GB:CAD27794.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) (GB:Q6EX42); similar to Os02g0822500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048560.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.527966308684462 -6.56951681471903 0.000140658715288099 0.906123443885937 7.99857800543116 15.8016512725675 -0.527966308684462 0.0628375710964056
AT4G16180_at 6.97920584326653 6.7910639124428 6.8393128221529 7.32766798530283 7.86342237040398 7.75711120010577 6.50991547551683 6.60576578673331 4.31388070111367 4.35418690722001 4.41202270574777 3.89884057131176 5.14173792533696 4.56862668449406 4.78611960979871 4.68021326070482 5.78183416649616 4.34968960901434 3.92460597174647 0.340218676781359 0.32738814005129 0.337581754484334 0.32738814005129 0.345809654668955 0.338039393368854 0.362188651100233 0.343711040640081 0.338907561783277 0.334554518051077 0.32738814005129 0.331216941049573 0.32738814005129 0.32738814005129 0.327599232673779 0.329486007784826 0.32738814005129 0.334163158334519 0.335234350125613 4 4|0 -|/ 9168585 9169707 9169152.5 9168338 9170449 - gene protein_coding_gene FALSE TRUE AT4G16180.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95572.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95573.1); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) 0.615109273293934 6.5657706673172 0.000141234214743457 0.909689577162605 7.9953860943074 11.5341548878105 0.615109273293934 0.0938935183950786
AT3G01550_at 5.9774230719018 7.10911673573228 6.69949936691082 6.59479153572856 5.85283720585735 5.44887331153534 9.6738310687406 9.55780141895215 9.39169656954513 8.49048373641316 9.14211922805459 9.28885956662051 8.40103244635544 8.62230796575472 8.70505894178464 8.91307654941182 7.47734222791622 8.39562784136058 8.4688596699749 0.302137421660886 0.263886159588925 0.284089073051507 0.280749793506216 0.280774809821590 0.30898444227478 0.267818216189607 0.263886159588925 0.264434072467758 0.267727937401499 0.269682619630775 0.264973390961400 0.268577969117308 0.275708155627692 0.263886159588925 0.263886159588925 0.281628664431314 0.272230153943152 0.263886159588925 3 3 - 217128 217957 217515.636 216814 219061 - gene protein_coding_gene FALSE TRUE AT3G01550.1 triose phosphate/phosphate translocator, putative similar to CUE1 (CAB UNDEREXPRESSED 1), antiporter/ triose-phosphate transporter [Arabidopsis thaliana] (TAIR:AT5G33320.1); similar to phosphate/phosphoenolpyruvate translocator precursor (GB:AAB40648.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853); contains InterPro domain Tpt phosphate/phosphoenolpyruvate translocator; (InterPro:IPR004696) -1.04802230744705 -6.56039018754793 0.000142065320008765 0.914900660856446 7.99079795965705 15.8152007583624 -1.04802230744705 0.209699411866229
AT4G38550_at 10.7653355870003 10.6725678822415 10.7273869371449 10.610014624435 10.7021413205442 10.6433838996888 8.8446691134613 8.92770264540087 10.7654349691892 9.76285702424969 10.3939048140382 10.2358323042473 9.75968461621143 10.5304430743695 9.6802072144923 10.0451770614556 9.74690074864135 10.5123626785303 9.62630888220283 0.0776924692689976 0.0755851573978571 0.0770348259374217 0.07699995154972 0.076416989938007 0.0813361810466205 0.0750018631387032 0.081123460352645 0.0812059619595419 0.0781143003536268 0.0744669084222094 0.0758186019298941 0.0787057889097977 0.0773590861532948 0.0784340334559565 0.0765240242037241 0.0803210371572666 0.0744669084222094 0.078940753004342 4 4 + 18027971 18028488 18028178.364 18025629 18028794 + gene protein_coding_gene FALSE TRUE AT4G38550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20950.3); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.464846663605798 6.54450050717213 0.000144551284249618 0.930765719283288 7.9772228234277 20.3189490958457 0.464846663605798 0.0313076447850845
AT4G38460_at 8.69827079178724 8.4129939663522 9.00151859649404 9.16278218186352 9.2375421044198 9.1276539702295 8.58612076736716 8.7327923624967 8.14663336950278 8.39375745049904 8.74128899580628 8.17183493535087 8.93656428712142 8.75403022232594 8.42825624439162 8.8993853511223 8.85646086502943 8.38913087745595 7.79020582981463 0.122631131712285 0.124110477734632 0.129860320757249 0.135889093327505 0.130029323485869 0.132304134295396 0.132313554679585 0.127529793168008 0.150365958728727 0.125776853415506 0.128487473315670 0.132059672851864 0.122631131712285 0.130158939014162 0.126684596230479 0.124787727686229 0.134159748348541 0.130691250701086 0.137727679990191 4 4 + 17995378 17995895 17995633.455 17994775 17996199 + gene protein_coding_gene FALSE TRUE AT4G38460.1 GGR (GERANYLGERANYL REDUCTASE); farnesyltranstransferase Identical to Geranylgeranyl pyrophosphate synthase-related protein, chloroplast precursor (GGR) [Arabidopsis Thaliana] (GB:Q39108;GB:Q9FPK0;GB:Q9SZM6); similar to GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1), farnesyltranstransferase [Arabidopsis thaliana] (TAIR:AT4G36810.1); similar to geranylgeranyl pyrophosphate synthase-related protein (GB:AAA81879.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.530874915152107 6.5401160509025 0.000145245626372160 0.935091342583969 7.97347032784687 17.2486182704251 0.530874915152107 0.0649766154735995
AT2G38710_at 8.58444214404148 8.62244580870826 9.37582324199605 9.45432406650863 9.18362699707133 9.3880256625768 8.85098500763117 9.02896705089619 8.06171421279322 8.54718734124342 8.6956067520913 8.74692682906129 8.86334577747503 8.70768362330274 8.6872371037797 8.74488368372763 8.99097153119875 8.94405481402426 8.5506013555192 0.128065115051080 0.124938205506356 0.126034532757432 0.129794187726409 0.121676774131050 0.121840556436732 0.122062484381638 0.136231587491738 0.141509900237826 0.123915452554984 0.121392703654269 0.121445264409324 0.127134295178979 0.125160418717505 0.130935665715769 0.123622596924507 0.125780607916493 0.127997765483187 0.125446949445700 2 2 - 16191598 16193745 16192207.182 16191447 16194251 - gene protein_coding_gene FALSE TRUE AT2G38710.1|AT2G38710.2 AMMECR1 family Identical to Uncharacterized protein At2g38710 [Arabidopsis Thaliana] (GB:Q9ZVJ2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP55119.2); similar to Os10g0573100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065469.1); contains InterPro domain AMMECR1; (InterPro:IPR002733) 0.494913891849784 6.53559775085669 0.000145965001138179 0.939576712326456 7.96960024712617 17.653124864521 0.494913891849784 0.0492713950426499
AT4G30960_at 10.4867008457521 10.5999528233023 11.2228049374899 11.1649866913858 11.6966765526772 11.3460333422533 11.1494123636419 11.017817349401 10.6972329963299 10.8558624256199 11.2781925773671 11.5835793193251 11.8376170965846 11.2776266673360 11.0891369332815 11.7270362710222 11.6046272105114 11.3788536063265 11.2605195299354 0.069595143609279 0.0698870615911049 0.0694593634747828 0.0709172285695335 0.0738751357485358 0.0746372370715052 0.0711517023124025 0.0701831253701264 0.077580035213173 0.0721238782046893 0.0693202649911495 0.0686470328513161 0.0703186692914514 0.070346365640679 0.0719321045615467 0.0687523852800353 0.0734503626369275 0.0701663771584089 0.070288359855771 4 4 + 15068139 15068687 15068467.727 15067059 15069016 + gene protein_coding_gene FALSE TRUE AT4G30960.1 CIPK6 (CBL-INTERACTING PROTEIN KINASE 6); kinase Encodes CBL-interacting protein kinase 6 (CIPK6). similar to CIPK20 (CBL-INTERACTING PROTEIN KINASE 20), kinase [Arabidopsis thaliana] (TAIR:AT5G45820.1); similar to CBL-interacting protein kinase 7 [Populus trichocarpa] (GB:ABJ91214.1); similar to CBL-interacting protein kinase 9 [Populus trichocarpa] (GB:ABJ91216.1); similar to CBL-interacting protein kinase [Brassica napus] (GB:AAL37170.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.539183297509071 6.53404156350702 0.000146213673014886 0.941031199523807 7.96826660548643 22.2905257936618 0.539183297509071 0.0684467552930502
AT3G25010_at 8.76303635124285 8.64314675436256 10.0809096874390 10.1915601743060 8.35915627726358 7.27494589785778 3.62597606785213 3.31798191559036 5.23929401446368 4.22593861946433 3.60709450749900 3.58046300036818 3.80695053303768 3.95406975743596 3.52919529433967 4.49936757224838 4.05914874066545 3.87874154946591 4.84125201683019 0.322652846159100 0.320635907736916 0.328165136821525 0.327072375584302 0.316884585128051 0.326399262609978 0.302817013279918 0.304244596598795 0.322683610358130 0.302810082718926 0.313015873068738 0.312977357891370 0.312489080735501 0.307528767905532 0.310825121708717 0.303924798335134 0.328489272355745 0.302810082718926 0.309440888700397 3 3 - 9110120 9110656 9110293.091 9110110 9112755 - gene protein_coding_gene FALSE TRUE AT3G25010.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G24900.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT3G24982.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G25020.1); similar to putative kinase [Brassica napus] (GB:ABI99471.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.992329194708863 6.53241652099402 0.000146473844610684 0.942559190069755 7.96687356526761 11.8486926838902 0.992329194708863 0.19708408400609
AT4G32340_at 11.5189590488258 11.6663491092843 11.8232190170314 11.8613909599056 12.2555877556733 11.9125408933502 11.1678488642406 11.1825865539726 10.8893686757385 11.1278758622468 11.7139395833675 11.0356953969976 11.7823209263818 11.7578671713699 11.017325454731 11.6367080666722 11.5259455796826 11.4167877309472 10.9967099993539 0.102538268004931 0.0996154389318891 0.102034373411684 0.0996863706366524 0.103965947138363 0.125254443857979 0.102520982745709 0.101740916881078 0.110220758307131 0.106317857291386 0.0997577181505525 0.0998570648020249 0.0998438308706745 0.107502345028854 0.101981388711435 0.100154888499660 0.117660464040322 0.106682543144507 0.101257463768450 4 4|0 -|/ 15612760 15614071 15613519.7 15612590 15614311 - gene protein_coding_gene FALSE TRUE AT4G32340.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G80130.1); similar to Os06g0606700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058025.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92034.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.530210494365789 6.53120617490107 0.000146667953262301 0.943661611289643 7.9658357574618 22.9187979008931 0.530210494365789 0.0650002339443043
AT2G39760_at 7.28402518201789 7.45579333284312 7.26273491914005 7.30505296993903 7.89016853584258 7.65279945912829 7.48030193330034 7.23688236315971 5.36089462499663 6.06048685486804 6.93722418912116 7.13274490028941 6.47864488333616 7.08922241688996 6.68732190118243 7.07100537089169 7.13327077123579 5.77244880660493 6.2318631779536 0.19802844267462 0.193528750726116 0.197208244733906 0.195819567548786 0.197860759140354 0.202414481198591 0.197202475104581 0.205520302909029 0.234130592898870 0.206237218432581 0.193528750726116 0.198787130966985 0.200833821141388 0.205239706343255 0.208758235023173 0.193528750726116 0.222370111369137 0.217288006459942 0.203031387050067 2 2 + 16591416 16592883 16591754.727 16590151 16593330 + gene protein_coding_gene FALSE TRUE AT2G39760.1|AT2G39760.2 ATBPM3; protein binding similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to Os07g0101400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058677.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); similar to Os07g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060495.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37987.1); similar to Os07g0101400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058677.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.533379393593368 6.52930053458312 0.000146974142478322 0.945484658563048 7.96420132321129 13.7820449823631 0.533379393593368 0.0663258455162565
AT1G53560_at 8.65840093162962 9.0190730102133 10.0868093102454 9.9541220443626 10.2576726970016 9.92816044988539 9.93400487822137 9.85139805959046 9.65748812352498 9.58445845430583 10.2301618215327 9.64452289202164 10.0600152237905 10.2515276444210 9.67985384166225 10.2460434210814 9.893889650712 10.1944269632626 9.33117090889907 0.113319192728093 0.110465802161511 0.110302803970915 0.111437262641582 0.107130270199556 0.109851710523361 0.111580777257708 0.110373773129820 0.117212727070425 0.107740141515789 0.107367211144353 0.109432163548861 0.111151207911733 0.107286571519347 0.108556160760504 0.105795350325199 0.127911147492348 0.105795350325199 0.107736093656098 1 1|0 -|/ 19988721 19989569 19989223.556 19988420 19989651 - gene protein_coding_gene FALSE TRUE AT1G53560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os05g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056334.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.595827296096979 6.52805320368382 0.000147174937964492 0.946629200987612 7.96313121234635 19.4859190115873 0.595827296096979 0.0887641327103394
AT2G18230_at 7.99409465074057 8.27055052500498 8.33788903212042 8.41631378954112 8.10719158126776 7.96920299216602 9.79319991936992 9.55983154437746 5.78775633440198 7.67929091309665 6.068002890665 6.71420572345137 7.0293137181908 6.55886208013546 5.74626163569752 7.17713867059703 7.62357259100982 5.51935335975952 7.33700928509558 0.214294454452717 0.219250408357482 0.218129547109106 0.215376347908598 0.219387228929306 0.219293761969228 0.224065692029267 0.227890584479761 0.259902393472758 0.219502052703194 0.226926856748129 0.214294454452717 0.218371181560512 0.226643275249523 0.228979695357432 0.220167352661712 0.229605182330763 0.249696347819475 0.222400993844867 2 2|0 -|/ 7939356 7940543 7939924 7939005 7941411 - gene protein_coding_gene FALSE TRUE AT2G18230.1 inorganic pyrophosphatase (soluble) (PPA) / pyrophosphate phospho-hydrolase / PPase Identical to Soluble inorganic pyrophosphatase 2 (EC 3.6.1.1) (Pyrophosphate phospho-hydrolase 2) (PPase 2) (PPA2) [Arabidopsis Thaliana] (GB:P21216;GB:Q8L988;GB:Q9ZPV6); similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT3G53620.1); similar to putative inorganic pyrophosphatase [Arachis hypogaea] (GB:CAG30522.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) -0.538433244137911 -6.52739243288016 0.000147281431053338 0.947166883104018 7.96256422821675 15.3006714266001 -0.538433244137911 0.0683686265853499
AT2G21580_at 8.31870003310324 8.4533298197599 7.38865984525289 7.33175502895512 7.47647241980611 7.11572898557064 8.32898483452882 8.58987112004434 8.09055921744984 7.59090297490819 7.8665851827901 8.51932954947677 7.46905004882585 7.46385055733412 8.68539838150026 7.19824327255335 7.34095131650504 7.00004842551567 7.55194179403084 0.206429417237531 0.209658752690447 0.210659039075897 0.21156177950018 0.211645801433337 0.212057278352903 0.206506625049415 0.210519108878609 0.219746829340129 0.212993923039369 0.207988933793598 0.208068034951825 0.209255913883165 0.214826328637731 0.210139265838342 0.202992125670081 0.217759854516117 0.213194524889462 0.207149699594206 2 2|0 +|/ 9243830 9244521 9244164.375 9243603 9244891 + gene protein_coding_gene FALSE TRUE AT2G21580.1|AT2G21580.2 40S ribosomal protein S25 (RPS25B)|structural constituent of ribosome Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago truncatula] (GB:ABE85391.1); contains InterPro domain S25 ribosomal protein; (InterPro:IPR004977)|Identical to 40S ribosomal protein S25-2 (RPS25B) [Arabidopsis Thaliana] (GB:Q9SIK2); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to S25 ribosomal protein [Medicago truncatula] (GB:ABE85391.1) -0.573051642806595 -6.52642478927533 0.000147437534093423 0.948023344220707 7.96173380829807 15.5941378045154 -0.573051642806595 0.0810887726347041
AT4G35300_at 7.47915731765748 7.56735522448676 7.3108688899867 7.19900395326075 8.01849437051388 7.78754182209226 8.01399740056764 7.58582142819086 5.98864054523022 6.71546941378623 7.41443024025148 7.55188614323384 7.66770440705723 7.69893018763225 7.68788870912358 7.69049475520296 8.06636974468557 7.54002295681848 6.48735704752093 0.188852274143898 0.189997802611917 0.188356561625243 0.186476559399176 0.189495466157429 0.187572692241454 0.186789991447592 0.191932575982262 0.210620293181474 0.188371966824324 0.181115770843729 0.181115770843729 0.186907344219896 0.192623844465065 0.204369539210041 0.191738777397991 0.184241353790479 0.205222620991608 0.189162515739735 4 4|0 -|/ 16796487 16797101 16796882.6 16796261 16799558 - gene protein_coding_gene FALSE TRUE AT4G35300.1|AT4G35300.2 TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transporter/ nucleoside transporter/ sugar porter|TMT2 (TONOPLAST MONOSACCHARIDE TRANSPORTER2); carbohydrate transporter/ sugar porter Identical to Monosaccharide-sensing protein 2 (Sugar transporter MSSP2) (MSSP2) [Arabidopsis Thaliana] (GB:Q8LPQ8;GB:O65497); similar to TMT3 (TONOPLAST MONOSACCHARIDE TRANSPORTER3), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G51490.1); similar to TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1), carbohydrate transporter/ nucleoside transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G20840.1); similar to hexose transporter 6 [Vitis vinifera] (GB:AAX47312.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE78431.1); similar to putative hexose transporter [Vitis vinifera] (GB:AAY40466.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.592477320196295 6.52566092962736 0.000147560890523249 0.94866896517397 7.96107817333427 14.6512158317678 0.592477320196295 0.0877246126689684
AT2G19830_at 8.69659128119318 8.7427806343531 9.00766166818004 9.14044808502795 9.2483270834602 9.0601570577459 8.79833000133637 8.89284111289312 8.82480177297822 9.11012845940528 9.72771709748013 9.59882611519412 9.66454227266039 9.75215609270827 9.55800417720597 9.58963441746716 9.45471263391822 9.39167834677904 8.93750296198004 0.124963706943057 0.121757605900053 0.122503439855800 0.122859421419532 0.127660979766381 0.120612391712373 0.124290194107176 0.125228117732281 0.149628269104576 0.132378581052896 0.125983634105817 0.120135722975035 0.126591213415760 0.123537852471945 0.127202895808417 0.121107949417722 0.131090988309434 0.123730698920139 0.132462009121576 2 2|0 -|/ 8565195 8566405 8565574.2 8564849 8566823 - gene protein_coding_gene FALSE TRUE AT2G19830.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT4G29160.3); similar to Os09g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062723.1); similar to SNF7 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95683.2); similar to Os06g0608500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058040.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.483096939440865 6.51848583151134 0.000148725155527852 0.95600529973303 7.95491534643002 18.2232104283393 0.483096939440865 0.0438159910859792
AT1G65010_at 4.97546901239541 4.81340180947073 3.14848262274474 3.18892918686785 3.86747983057001 3.34513648605463 5.56151359048145 5.38337483929104 6.26960486750511 5.27700287488944 7.20858464962125 7.59477847663102 5.68850330480378 6.17343265048848 7.19768529461901 5.82106508703378 4.62428461038604 6.54688115823198 5.91114232090532 0.265707722740580 0.255818097270405 0.269203146092022 0.260354304085372 0.272868126829773 0.263626596501723 0.256911070760430 0.258691159191443 0.263772907884699 0.255818097270405 0.2593136975114 0.268189026526261 0.258787158293116 0.263371856752702 0.259100425427643 0.258902634503189 0.261338299914171 0.263189568457752 0.263104103248132 1 1 + 24157126 24157657 24157442.182 24153577 24157937 + gene protein_coding_gene FALSE TRUE AT1G65010.1 similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE94710.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.629140449236692 -6.5168335623698 0.000148994687850798 0.957588858817081 7.95349507810629 10.3735493847729 -0.629140449236692 0.0997848388546634
AT1G74440_at 7.55277095742971 7.77899734741515 7.20603349446454 7.0359232623453 6.81795953573023 6.02955402134822 3.07931872256398 3.38003119486239 5.71057506546185 3.35984555166959 4.9524085017137 5.65397789739062 4.32090154353726 5.63137287177436 4.577591533928 4.32117098161234 3.62099196202803 5.05871273283097 4.28171468853967 0.255432803630200 0.247432228188159 0.251340352885221 0.252810005020916 0.249701108524472 0.265889229752718 0.250138992810282 0.258803696112028 0.265933696128416 0.246734791330217 0.248838556710924 0.248047269837012 0.255352919389392 0.260940939898559 0.246734791330217 0.252119563080277 0.260764002970482 0.255942603057695 0.250608323858577 1 1 - 27982972 27983934 27983545.818 27980163 27984065 - gene protein_coding_gene FALSE TRUE AT1G74440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18720.1); similar to YGL010w-like protein [Picea mariana] (GB:AAC32136.1); contains InterPro domain Protein of unknown function DUF962; (InterPro:IPR009305) 0.820508628724568 6.51202791795765 0.000149781681122251 0.962497082891585 7.94936186165474 10.7189999528494 0.820508628724568 0.154021287101416
AT1G62180_at 10.2316561698862 10.6780788284657 10.8240792143041 11.0226436545738 10.5223148807686 10.3303984466326 12.3328770326411 12.3841175462664 11.1519893552678 11.8292672923569 11.2087508737192 10.4694615474972 11.1915004908154 11.0607707094017 10.1817665852150 10.9601615753412 11.4342276078955 10.9318358017657 11.2220319190897 0.0869527319998058 0.0854290185088582 0.0864509577913577 0.0886657652998841 0.086427813474158 0.0895763679382901 0.0911100583061577 0.0892284835244818 0.0928798122899996 0.0888142235744069 0.0860416936257575 0.0889995617695817 0.086570526262652 0.0925087467531947 0.0891491756419277 0.0877768898896424 0.0894774078476202 0.0884176734872906 0.0891697230148206 1 1 - 22979476 22979990 22979730.636 22979195 22981267 - gene protein_coding_gene FALSE TRUE AT1G62180.1 APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. Identical to 5'-adenylylsulfate reductase 2, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 2) (APS sulfotransferase 2) (Thioredoxin-independent APS reductase 2) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 43) (PAPS reductase homolog 43) (Prh-43) (APR2) [Arabidopsis Thaliana] (GB:P92981;GB:O04215;GB:O04583;GB:O22554;GB:Q38947); similar to APR3 (APS REDUCTASE 3) [Arabidopsis thaliana] (TAIR:AT4G21990.1); similar to APR1 (PAPS REDUCTASE HOMOLOG 19) [Arabidopsis thaliana] (TAIR:AT4G04610.1); similar to APS reductase [Brassica juncea] (GB:CAA04610.1); similar to adenosine 5' phosphosulfate reductase [Populus alba x Populus tremula] (GB:AAQ57202.1); similar to adenosine 5'-phosphosulfate reductase [Glycine max] (GB:AAL66290.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-independent 5' (InterPro:IPR004508) -0.601555067596738 -6.50730903866707 0.000150558911770368 0.967341008124612 7.9452998655924 22.2062235156229 -0.601555067596738 0.0912735864500975
AT4G08300_at 6.95760803259798 7.24714001250249 7.65875397200988 8.08835052952972 6.4172842740325 5.58720159722235 9.80748663728162 9.82375309120472 7.72557379446897 8.35549010990973 7.98054053180906 7.16057831231354 8.23607045395801 7.63217550562507 6.43866684953596 7.93066783515676 8.21847950457042 7.41397469308357 7.50289816010024 0.236948152711462 0.238996071220062 0.235948114677607 0.238992595125552 0.232676638200208 0.254631098756123 0.242284641506414 0.238174352452374 0.259725036816707 0.235533328872844 0.234363105878509 0.232673988814414 0.238615296465648 0.252766466898539 0.244817766450472 0.232673988814414 0.234508050986825 0.249219793140836 0.23351658552648 4 4|0 +|/ 5246664 5248051 5247489.778 5244888 5248339 + gene protein_coding_gene FALSE TRUE AT4G08300.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G44800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.878012913800592 -6.50167116344965 0.000151493321967365 0.97319310031835 7.94044237477768 15.4423047177558 -0.878012913800592 0.169353580295848
AT3G22370_at 9.557339590471 9.81633218114098 10.5748911363306 10.5307890674801 10.3432262860267 9.73020758596837 10.3607094629287 10.1497440882618 8.4002225395434 8.8919691287058 9.62463468311855 9.38247753043278 9.87819049854119 9.4069334539232 9.01786494955175 9.98238857695077 10.1893480196304 9.76207313084798 8.4539744663939 0.126455494646239 0.117232922901192 0.122945732758185 0.126611098944166 0.119102061329754 0.119495873113697 0.117232922901192 0.120318990234602 0.138065762865677 0.125033388142618 0.125435187120204 0.117232922901192 0.123122212742235 0.127934725254899 0.129777742383382 0.117232922901192 0.127634219011055 0.120136352057998 0.137354951021039 3 3 + 7907451 7908395 7908085.091 7906800 7908747 + gene protein_coding_gene FALSE TRUE AT3G22370.1 AOX1A (alternative oxidase 1A); alternative oxidase Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. Identical to Alternative oxidase 1a, mitochondrial precursor (EC 1.-.-.-) (AOX1A) [Arabidopsis Thaliana] (GB:Q39219;GB:O23914;GB:P93734); similar to AOX1B (alternative oxidase 1B), alternative oxidase [Arabidopsis thaliana] (TAIR:AT3G22360.1); similar to oxidase (GB:AAA32870.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) 0.6985903327055 6.49828979821565 0.000152056798058995 0.976660813932927 7.93752673854844 19.2516770416205 0.6985903327055 0.121054238553147
AT1G07000_at 7.6511709058052 7.9149220136209 8.02242443946328 7.93218667047515 7.1724512957516 7.01265687810998 4.42062139824175 3.97967523304694 6.40090678139734 4.1951250575605 4.88803528874319 5.14340634974100 4.57330635167466 5.25003451419809 3.84007238700909 5.073205916778 4.20304916136605 5.08214932280499 4.64485381746594 0.220347270016697 0.217684191105267 0.215979613701543 0.215979613701543 0.219246775151832 0.221034215634496 0.220028624834764 0.227804542330480 0.227881966239561 0.215979613701543 0.218952100830838 0.219167009282136 0.220083619642800 0.228154205907646 0.223567972061137 0.215979613701543 0.22697461263324 0.230591108554371 0.215979613701543 1 1 - 2150448 2150964 2150710.545 2150193 2152324 - gene protein_coding_gene FALSE TRUE AT1G07000.1 ATEXO70B2 (exocyst subunit EXO70 family protein B2); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70B1 (exocyst subunit EXO70 family protein B1), protein binding [Arabidopsis thaliana] (TAIR:AT5G58430.1); similar to unnamed protein product [Solanum lycopersicum] (GB:CAA78112.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.60984731300138 6.49223137718037 0.000153072150387246 0.983029349786897 7.93229842650102 11.681739919488 0.60984731300138 0.0944179772570647
AT1G21130_at 9.14306682678406 9.25725419987714 9.36762470991162 9.469478055478 10.0743903849878 9.43764565140415 8.31557631921085 8.22791280456815 8.83906028965972 8.6827013343846 9.21492551007138 9.5878842648634 9.15825157700131 9.15226215350183 8.54530712831684 8.90307484716556 8.57028821716914 9.17645491581959 8.10044245202764 0.152762232743009 0.148045117837770 0.154436077910968 0.152666785498685 0.152316048512918 0.151235863313551 0.155053368587916 0.150432788500645 0.151183148353751 0.148045117837770 0.14948342167444 0.153546006916514 0.154513662270039 0.152039956611939 0.153175267061899 0.148565885287827 0.148045117837770 0.149826797743755 0.148081371894615 1 1 - 7399365 7399804 7399714.364 7399051 7400594 - gene protein_coding_gene FALSE TRUE AT1G21130.1|AT1G21130.2 O-methyltransferase, putative similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21120.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21100.1); similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21110.1); similar to phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] (GB:BAD18975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|similar to O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G21120.1); similar to phloroglucinol O-methyltransferase [Rosa chinensis var. spontanea] (GB:BAD18975.1); contains InterPro domain O-methyltransferase, family 2; (InterPro:IPR001077); contains InterPro domain Dimerisation; (InterPro:IPR012967) 0.674576773775 6.48982371952807 0.000153477724535999 0.985480469245652 7.93021911140229 17.9512640034090 0.674576773775 0.114339458148192
AT4G28770_at 8.32925888955001 8.41614622478663 8.74902152195117 8.83520050955092 9.16409613989156 8.8406055082333 8.43610079054802 8.0894294142461 7.5636063429001 7.75159323954106 8.42495543826436 8.18954425578874 8.17507473563827 8.33891999571691 8.14536737577365 8.03767243146662 8.20370513100772 8.1147752361061 7.55256516023002 0.143331452576028 0.143331452576028 0.158315253663631 0.153824934951118 0.158562707629240 0.150054144571919 0.149193482210849 0.145138361467435 0.163634297663951 0.159477407817626 0.143331452576028 0.143331452576028 0.151447743518702 0.153518471352845 0.151505249240006 0.151730661525112 0.14755998399483 0.159799813438685 0.157780530527681 4 4|0 -|/ 14212369 14213253 14212856.25 14211930 14213677 - gene protein_coding_gene FALSE TRUE AT4G28770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20230.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE93060.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.580330333768645 6.48894212565861 0.000153626525716358 0.986282295099021 7.92945752386705 16.5206524111084 0.580330333768645 0.0847444039562338
AT1G10200_at 9.23911815804204 9.11103513705384 8.18472820810107 8.19948840931881 9.18386054371986 8.78740676183315 8.14743355682425 7.74157416626282 8.2870825139444 7.6819224076922 9.26840857855049 9.32442868093112 9.12919318921978 9.37918153941603 9.42605705821999 8.96084923540568 8.94402963019978 8.92713101387295 7.85806521680474 0.139172284560323 0.134919381109281 0.146655263857833 0.142496947254678 0.143544493117416 0.146435741386776 0.145799139212431 0.144708098510151 0.154439668006023 0.164917863507007 0.134919381109281 0.134919381109281 0.13688455291887 0.135750567244676 0.134919381109281 0.135093064710375 0.13965220784282 0.142457323477728 0.162222454390633 1 1|0 -|/ 3346681 3347688 3347158.5 3346392 3347887 - gene protein_coding_gene FALSE TRUE AT1G10200.1 transcription factor LIM, putative similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39900.1); similar to LIM-domain protein [Brassica napus] (GB:ABB51614.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) 0.628316939555343 6.47841884461821 0.000155415003600716 0.997608908112996 7.9203575889474 17.1304639069149 0.628316939555343 0.100687565353708
AT4G29740_at 7.13087434419581 7.59962899269332 7.73540854275718 7.8917249138769 5.48902601860916 5.71176158409242 3.54202643031635 3.97642941707488 5.84659045900819 4.67977953314555 5.25570733216461 6.54422574543366 4.44645660969258 5.39629342510762 6.04605295807271 5.70558425066676 4.32863592231236 5.08464432998663 4.80026356255054 0.232967585872159 0.234859026991158 0.228793372600596 0.230417675124436 0.225224252528713 0.227630471494408 0.222610398954868 0.225014856498342 0.233625768056044 0.238147020485399 0.221792130078704 0.219667948909631 0.228298544461645 0.228713777592004 0.224734112376021 0.222294493063040 0.223606086886487 0.219728387446154 0.228786516897961 4 4|0 +|/ 14568213 14568907 14568628.2 14566271 14569338 + gene protein_coding_gene FALSE TRUE AT4G29740.1|AT4G29740.2 CKX4 (CYTOKININ OXIDASE 4); cytokinin dehydrogenase It encodes a protein whose sequence is similar to cytokinin oxidase/dehydrogenase, which catalyzes the degradation of cytokinins. Identical to Cytokinin dehydrogenase 4 precursor (EC 1.5.99.12) (Cytokinin oxidase 4) (CKO 4) (AtCKX4) (CKX4) [Arabidopsis Thaliana] (GB:Q9FUJ2;GB:Q9SU77); similar to CKX2 (CYTOKININ OXIDASE 2), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G19500.1); similar to cytokinin oxidase [Zea mays] (GB:CAA77151.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094)|Identical to Cytokinin dehydrogenase 4 precursor (EC 1.5.99.12) (Cytokinin oxidase 4) (CKO 4) (AtCKX4) (CKX4) [Arabidopsis Thaliana] (GB:Q9FUJ2;GB:Q9SU77); similar to CKX2 (CYTOKININ OXIDASE 2), cytokinin dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G19500.1); similar to cytokinin oxidase [Dendrobium cv. 'Sonia'] (GB:CAC17752.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) 0.693406344437668 6.47745501653372 0.000155579950294912 0.998512120992745 7.91952328263218 11.3645239920759 0.693406344437668 0.120205470544465
AT3G51160_at 6.224332373874 6.38160166875431 6.19690682755586 6.27464031147352 5.98051497651794 6.00764295455197 6.00435392483604 6.09057653012767 5.42575243667897 4.75612684320437 6.44144691389263 6.81158524646515 6.05844540804804 6.3641566836718 6.23983897002653 5.73943992136658 5.57695039684074 5.63907405508 5.18010695340003 0.203145447731983 0.204929727142832 0.204210604951462 0.200510155478266 0.211073585114069 0.219535993291713 0.200390038081619 0.208212049978421 0.22903178338955 0.220607345231685 0.207048660822483 0.201969031739293 0.199752415565187 0.211990220150619 0.200605431610249 0.204776913791566 0.206047104181952 0.205939444473860 0.211770436204422 3 3 - 19018211 19018757 19018532.818 19017989 19019406 - gene protein_coding_gene FALSE TRUE AT3G51160.1 MUR1 (MURUS 1) Catalyzes the first step in the de novo synthesis of GDP-L-fucose. Identical to GDP-mannose 4,6 dehydratase 2 (EC 4.2.1.47) (GDP-D-mannose dehydratase 2) (GMD 2) (MUR1) [Arabidopsis Thaliana] (GB:P93031;GB:Q8LFY4;GB:Q9SD30); similar to GMD1 (GDP-D-MANNOSE 4,6-DEHYDRATASE 1), GDP-mannose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT5G66280.1); similar to hypothetical protein [Thellun (GB:ABB45857.1); similar to Chain A, Crystal Structure Of The Gdp-Mannose 4,6-Dehydratase Ternary Complex With Nadph And Gdp-Rhamnose. (GB:1N7G); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain GDP-mannose 4,6-dehydratase; (InterPro:IPR006368) 0.463957632394814 6.47532667287107 0.000155944870356358 1 7.91768045020305 11.7598358345539 0.463957632394814 0.0341520607994674
AT3G61960_at 8.28957070084241 8.519662567312 8.91019129545172 8.99135094760605 8.94514006088347 8.5376440731477 7.674852899832 7.76009514616483 7.48778648108806 7.25751080212097 7.79233180221244 7.53195911064783 7.80195604484661 7.79801681045728 7.24067882248507 7.90868998671847 7.80687002883265 7.53643579412936 7.19134850156796 0.189445884388165 0.181554460050612 0.198931788773181 0.184517948063674 0.180892160448864 0.195329858462944 0.19456727329805 0.193997496123506 0.190141940910268 0.187731558346978 0.183940775714342 0.189807691912368 0.189507914927728 0.200094214594073 0.187461254825174 0.188168508913769 0.184370222975828 0.195033824306656 0.193238144655151 3 3|0 -|/ 22952947 22953639 22953254.7 22952747 22956263 - gene protein_coding_gene FALSE TRUE AT3G61960.1|AT3G61960.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G37840.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95170.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53930.2); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95170.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.574969152091657 6.46923658339723 0.000156994265260619 1 7.91240351517206 15.9482297422218 0.574969152091657 0.083506429587159
AT3G61140_at 8.23457331376687 8.182866786929 8.65050430966446 8.42578873987102 8.2820752530646 8.30132917380716 8.10572818489256 7.8147142987055 6.7417195520491 6.1563405596696 6.6898652002737 7.1160363176131 6.96341751159121 6.76259349209095 7.20671187255382 7.10973515417034 7.57004670619465 6.8740849895261 6.06333050995007 0.175677451972343 0.175677451972343 0.176449077833888 0.177485799446835 0.176732099313547 0.175677451972343 0.179627177808376 0.178017432283898 0.193870404604692 0.190656857404681 0.180428693869160 0.180071987621984 0.180379132927216 0.177120919264807 0.178614819453256 0.180410113057317 0.192299010852767 0.176872981099915 0.183223771895129 3 3|0 +|/ 22638789 22639807 22639240.9 22637237 22641092 + gene protein_coding_gene FALSE TRUE AT3G61140.1 FUS6 (FUSCA 6) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development. Identical to COP9 signalosome complex subunit 1 (CSN complex subunit 1) (Constitutive photomorphogenesis protein 11) (FUSCA protein 6) (FUSCA6) (CSN1) [Arabidopsis Thaliana] (GB:P45432;GB:Q8GYL2;GB:Q9C5F0;GB:Q9M2E9;GB:Q9M4G0); similar to COP9 signalosome complex-related / CSN complex-related [Arabidopsis thaliana] (TAIR:AT3G12850.1); similar to FUS6 (GB:AAA32792.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.523275793986905 6.46574548213552 0.000157599319643590 1 7.90937599877537 14.9282099806166 0.523275793986905 0.0643406086915968
AT1G72700_at 6.56748588428589 7.298444745837 8.88667028145642 8.53952419856545 7.35673716219369 6.66594053313796 5.71989967425784 4.98790130665486 5.33095556410473 4.8924700785647 5.59244198420639 6.00206366659733 5.86980732539288 5.05539884710917 5.42463671072563 5.00874276598825 4.9562894735411 5.07216554287633 4.52008494313849 0.24632965629667 0.247798780994199 0.263530955794783 0.264280407840886 0.251080774166513 0.24971818354147 0.24895408624462 0.242037617907962 0.26209471725228 0.248361101292227 0.246692409830043 0.242037617907962 0.248691388734871 0.251266123884964 0.2438483354717 0.242037617907962 0.246314080836066 0.248038198985283 0.245764770551655 1 1 + 27374578 27375102 27374799.545 27370572 27375395 + gene protein_coding_gene FALSE TRUE AT1G72700.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 5 (EC 3.6.3.1) (Aminophospholipid flippase 5) (ALA5) [Arabidopsis Thaliana] (GB:Q9SGG3); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G17500.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G13900.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G54280.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE81304.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to Putative phospholipid-transporting ATPase 7 (Aminophospholipid flippase 7) (GB:Q9LVK9); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 1.08848745101574 6.46294473318945 0.000158086578615251 1 7.90694581809453 12.1464238823773 1.08848745101574 0.223490758861785
AT1G74160_at 5.5536748556097 6.06331326571643 4.9706862342534 4.98490565964626 5.32558234840904 5.63473118711363 6.3896888244159 6.59684072432173 6.37915933231524 6.50543538565687 6.29844778155805 6.42250613785423 6.41132992821223 6.1334724993494 5.66830445967434 6.35335204510435 5.91413595680818 5.88326293136243 6.68261050693278 0.203104395329346 0.201499913826161 0.209225793253638 0.205517909522101 0.213588905165073 0.213272227544256 0.206817611739063 0.20438204929933 0.219527602368729 0.201900522512144 0.210199740870736 0.207471318247109 0.205324301456405 0.203209769990775 0.206096579254654 0.201499913826161 0.211750140642908 0.211007012977455 0.206927120551184 1 1 + 27894229 27894783 27894476.545 27890087 27895092 + gene protein_coding_gene FALSE TRUE AT1G74160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18620.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96645.1); similar to Os07g0109400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058723.1); similar to Os07g0603300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060212.1) -0.654351667152459 -6.45988937146066 0.000158620021724511 1 7.9042933468267 12.0189294919984 -0.654351667152459 0.109232785817822
AT2G33430_at 7.80354453473058 8.2526633286777 7.2590431966277 7.08600628703265 7.58164716105427 7.67359062167727 8.66867020888932 8.1854786477156 7.37919445389173 7.578586287994 6.64410570456019 7.0880486492798 7.05853911642047 6.7179666127204 7.45897369823322 6.64674949267943 7.08940988898827 6.87004132250631 7.52366537089535 0.209440628498369 0.205518890548660 0.200180644103326 0.206214699519802 0.198487953426706 0.199158294212696 0.20992016155381 0.213890159936233 0.208018312065609 0.201596507322441 0.205483577676258 0.19948221460009 0.198546673665443 0.201744919225292 0.204811423393409 0.200015857921389 0.207379891155608 0.209155275440484 0.205159174097041 2 2 + 14169890 14171761 14170500.091 14169743 14172118 + gene protein_coding_gene FALSE TRUE AT2G33430.1 plastid developmental protein DAG, putative similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT1G32580.1); similar to putative plastid protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22214.1); similar to OSJNBa0041A02.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD41861.2); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.687301711829417 -6.45630825466046 0.000159247775851918 1 7.90118263341119 15.0341028391009 -0.687301711829417 0.119090927280518
AT2G23610_at 9.42255651432379 9.44059982670713 8.88142698986506 8.96747971460917 9.20023420493006 8.81645557178122 10.3782303470465 10.4390726809333 9.87880543176912 10.1130742628482 10.0193559060554 9.63670280208335 9.52415304928985 9.99810453127654 9.68174639639686 9.72585611510932 9.47953166131033 9.78001438463728 9.54193832161245 0.136944517115625 0.129158081470529 0.138629039611855 0.13786665988644 0.128068261715342 0.139736659134093 0.134452123008253 0.128263194707327 0.141801083146913 0.130985294265407 0.126239720683214 0.126239720683214 0.126239720683214 0.126887117842066 0.132414888004963 0.128365577257304 0.150809970175138 0.133324485524364 0.133990951453261 2 2|0 -|/ 10051584 10053258 10052462.7 10051259 10053612 - gene protein_coding_gene FALSE TRUE AT2G23610.1 esterase, putative similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G23580.1); similar to ethylene-induced esterase [Citrus sinensis] (GB:AAK58599.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.533819310798171 -6.45363679596989 0.000159717847953645 1 7.89886081227751 19.2309015368644 -0.533819310798171 0.0689440878961284
AT3G27180_at 5.64242557544206 5.13704743960926 5.22865166978819 4.64761576024069 5.07791890544101 5.03651119913031 6.92231655742903 6.31757268054244 4.38851386539164 4.71629128832994 3.65716391317029 3.54894615401826 3.59870198959765 3.13933529159501 3.92622087489621 3.69129442933335 4.16958998001986 3.58945548035862 4.10266623428269 0.28781286176968 0.281080383315440 0.281080383315440 0.288698147760216 0.293099573600222 0.284450368049160 0.289887393115868 0.3001865770053 0.281080383315440 0.288799687432848 0.284117142332634 0.288294281639352 0.292330567702142 0.284318393195520 0.309385860240917 0.288702332482649 0.292456334617102 0.293957168098969 0.283592104444819 3 3|0 -|/ 10028808 10029271 10029082.333 10028074 10031306 - gene protein_coding_gene FALSE TRUE AT3G27180.1 similar to Os01g0920300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045219.1); similar to putative 23S rRNA (Uracil-5-)-methyltransferase [Candidatus Protochlamydia amoebophila UWE25] (GB:YP_008997.1); contains domain RNA M5U METHYLTRANSFERASE FAMILY (PTHR11061); contains domain no description (G3D.3.40.50.150); contains domain gb def: Emb|CAB12631.1 (PTHR11061:SF5); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) -0.87228406407504 -6.4523001481247 0.000159953617493460 1 7.89769869393136 9.53504696184875 -0.87228406407504 0.169597061888425
AT2G24590_at 7.48873006024003 7.57334029523685 7.48216527593634 7.69898417039807 7.75267315850767 7.53498931743754 7.4789076129633 7.74783904646664 6.53901448131615 5.82954421167427 6.61837709878246 7.22791223915222 7.05755679209932 7.4230160818721 7.46799189045331 6.69893755726475 7.09594611076924 6.61288757168654 5.59020140444968 0.208574499747503 0.202928313175641 0.223193837727333 0.211613525307423 0.208505327065109 0.205882670100142 0.204456875355939 0.203410915234255 0.210657835960306 0.204994686596350 0.20500791878454 0.197705918200118 0.197705918200118 0.201159257836780 0.204698833868123 0.203656321358822 0.210601793657066 0.210298700427049 0.202081072073115 2 2 + 10456942 10457690 10457325.273 10456710 10458263 + gene protein_coding_gene FALSE TRUE AT2G24590.1 splicing factor, putative similar to SRZ-22 (serine/arginine-rich 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84871.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.542036764394912 6.4518236996315 0.000160037750002166 1 7.89728439048321 14.1004943839350 0.542036764394912 0.0721618640931136
AT1G76130_at 6.87737016599148 7.17561046549355 8.77364941296162 9.07705148918777 7.91216177500705 8.07675191858837 8.47018120374307 8.66108864720537 7.54833652948972 8.40747884989228 8.27984306971065 7.43059971401627 8.6571054367374 8.58399838031207 7.01736467062672 8.79110035045003 9.34595468264509 8.30360752855384 7.46387708955938 0.177309043583952 0.158065953344243 0.159707515128229 0.166966307259333 0.166210401137673 0.164244842847948 0.160033714778033 0.166776557735131 0.170816787121293 0.164399117928190 0.161058212062761 0.166505642909099 0.162025376318738 0.159060712265845 0.170289510114158 0.158792301100914 0.167742198463753 0.170433707373635 0.160338688635287 1 1|0 +|/ 28567928 28568783 28568364.4 28566175 28568970 + gene protein_coding_gene FALSE TRUE AT1G76130.1 AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2); alpha-amylase alpha-amylase, putative / 1,4-alpha-D-glucan glucanohydrolase, putative, strong similarity to alpha-amylase GI:7532799 from (Malus x domestica);contains Pfam profile PF00128: Alpha amylase, catalytic domain. Predicted to be secreted based on SignalP analysis. similar to AMY3/ATAMY3 (ALPHA-AMYLASE-LIKE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G69830.1); similar to alpha-amylase [Malus x domestica] (GB:AAF63239.1); similar to cytosolic alpha-amylase [Malus x domestica] (GB:AAX33234.1); similar to alpha-amylase [Plantago major] (GB:CAH58639.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase beta-sheet, C-terminal; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046) 0.579236800572776 6.44956083746196 0.000160437996218479 1 7.89531620829497 16.1818635774949 0.579236800572776 0.0855764784896806
AT4G38430_at 7.89969982622549 7.99859061486868 6.51621539248217 6.68003482584465 7.06810496491958 7.68266824625631 7.88405003073737 8.29555134640034 8.58035011371987 8.76551728882849 8.34664267430974 8.5542397757282 8.06125609650899 8.25561550578572 8.37744480562516 8.36136078583213 8.00503026718497 8.13410478979321 8.73266992876358 0.144880672720001 0.149334171876095 0.164042701944334 0.159496361172567 0.144143566504207 0.146921528846495 0.143854578268361 0.153970894415995 0.149853432905899 0.145796645285050 0.145249411722490 0.144361838565165 0.154300098338964 0.151127531309681 0.150995278701598 0.147962379968639 0.151338659153293 0.147295557390247 0.145946112928678 4 4 + 17988017 17988520 17988296.364 17986460 17988801 + gene protein_coding_gene FALSE TRUE AT4G38430.1 ATROPGEF1/ROPGEF1 (KINASE PARTNER PROTEIN-LIKE); Rho guanyl-nucleotide exchange factor/ protein binding Member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily, also known as DUF315). Interacts with ROP1 but the whole protein lacks Rho guanyl-nucleotide exchange factor activity in vitro. The DUF315/PRONE domain is sufficient to confer RopGEF catalytic activity. Identical to Rop guanine nucleotide exchange factor 1 (RopGEF1) (Kinase partner protein-like) (KPP-like) (ROPGEF1) [Arabidopsis Thaliana] (GB:Q93ZY2;GB:Q9SVE2); similar to ATROPGEF7/ROPGEF7 (KINASE PARTNER PROTEIN-LIKE), Rho guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT5G02010.1); similar to Os01g0849100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044808.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79161.1); similar to Os09g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063832.1); contains InterPro domain Protein of unknown function DUF315; (InterPro:IPR005512) -0.73180051834513 -6.44259060839836 0.000161677788007550 1 7.88924874972646 15.9805182133168 -0.73180051834513 0.132207143688497
AT4G34480_at 6.55994722825316 7.10634128882186 7.80174261950726 7.87674246062481 7.03226879450528 7.03958680615447 5.42534078872717 6.20723593990225 7.35780392245826 6.16696207959655 7.37832795436211 6.58633130202026 7.46915994548671 7.5679793504507 7.03741647485539 7.17219517147874 6.68655936535216 7.6258776489614 6.25281765712315 0.183415277603053 0.171727865015779 0.178879661078122 0.186401947206957 0.171860537589304 0.185137154488119 0.194342657663697 0.177726773420988 0.176529882357587 0.190774362744986 0.172922796195154 0.171929753549921 0.171727865015779 0.180114052630772 0.173304990781089 0.176269937478016 0.190153601597261 0.184361785649506 0.182334846168497 4 4 - 16481997 16483327 16482711 16481884 16483999 - gene protein_coding_gene FALSE TRUE AT4G34480.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 7 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 7) ((1->3)-beta-glucanase 7) (Beta- 1,3-endoglucanase 7) (Beta-1,3-glucanase 7) [Arabidopsis Thaliana] (GB:Q9M069;GB:O65675;GB:P80829); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G16230.1); similar to beta-1,3-glucanase-like protein [Olea europaea] (GB:AAK58515.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.855410937000065 6.44122459792722 0.000161921990745635 1 7.88805879057467 13.7726551348188 0.855410937000065 0.165589444317624
AT2G19940_at 6.74736915643233 7.19382161404121 5.94119096644112 5.52851793661576 6.46981728480049 6.2032920221128 7.59114699670686 7.71217806647994 7.82536724810316 7.52534194248446 7.36669443626138 7.90673868979618 7.32456612990218 7.57677840889503 7.88692679370353 7.31966644472871 6.6057050590182 7.89384080540095 7.34477839831118 0.171325199694446 0.169394815229572 0.183478924746570 0.177593161311589 0.165978883479964 0.172280714858718 0.177646826977893 0.178481099276914 0.173846377378725 0.168599381501146 0.1668143454818 0.172205862163958 0.165736342138530 0.180807283675716 0.169000154048351 0.181271676529137 0.195748945627204 0.173042645079123 0.167720438630410 2 2|0 +|/ 8621661 8622684 8622286.333 8620005 8623099 + gene protein_coding_gene FALSE TRUE AT2G19940.1|AT2G19940.2 semialdehyde dehydrogenase family protein Identical to Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor (EC 1.2.1.38) (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) [Arabidopsis Thaliana] (GB:Q93Z70;GB:O82187); similar to Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplast precursor (AGPR) (N-acetyl-glutamate semialdehyde dehydrogenase) (NAGSA dehydrogenase) (GB:Q93Z70); contains InterPro domain Semialdehyde dehydrogenase, NAD - binding; (InterPro:IPR000534); contains InterPro domain N-acetyl-gamma-glutamyl-phosphate reductase; (InterPro:IPR000706); contains InterPro domain Semialdehyde dehydrogenase, dimerisation region; (InterPro:IPR012280) -0.677736169796104 -6.44094856280642 0.000161971386940109 1 7.88781829612553 14.1985553182519 -0.677736169796104 0.116770621979156
AT3G19850_at 8.65903989280386 8.5437197258164 7.6743813506962 7.7421906646566 8.53821955567602 8.32902913039264 9.04418101801048 8.76626891623305 9.5335162593061 9.36314112109469 9.4298445619137 9.13822131527198 9.11429862026467 9.21352330850456 8.97298030482133 9.29301216800403 8.78505157865 8.94541815425667 9.52074881320147 0.134586836192968 0.133499638003705 0.131144139916779 0.139157273655871 0.129052651573254 0.126463685092667 0.123616569933770 0.127194159538183 0.131932854860160 0.125950320813081 0.138635965309541 0.131848238756968 0.130968941448261 0.135887832949872 0.131533378796500 0.133712671588303 0.135975222654808 0.128255691223741 0.125783160915195 3 3|0 -|/ 6898393 6899917 6898879.333 6898187 6901261 - gene protein_coding_gene FALSE TRUE AT3G19850.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT1G50280.1); similar to H0403D02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68185.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) -0.521636096300236 -6.44084311845911 0.00016199026046337 1 7.88772642509634 17.7041350231165 -0.521636096300236 0.064494530304687
AT2G47390_at 9.5858207327959 9.45399835308102 9.65139636611608 9.55439862062687 9.90752039067883 9.4785479462199 8.93526312665832 8.7056865169939 8.29181615734463 8.39299032531401 8.69969295785878 8.96884230881235 8.59932139310203 8.9577863206987 9.04687047924632 8.81497406279925 8.87520505270066 8.9792387835658 7.82619311764587 0.140675432480369 0.142234989327953 0.140350326212461 0.144525261992149 0.139457224038033 0.139878660626295 0.140779351754295 0.143097528201905 0.154058949212439 0.140870754911312 0.143327299641667 0.137145558198707 0.141670218539240 0.134724126201705 0.134693112897655 0.136771898549244 0.137761199928463 0.140788899284082 0.155077652646501 2 2 - 19449536 19450158 19449842.909 19449062 19453435 - gene protein_coding_gene FALSE TRUE AT2G47390.1 serine-type peptidase similar to acylaminoacyl-peptidase-related [Arabidopsis thaliana] (TAIR:AT4G14570.1); similar to Dipeptidyl aminopeptidases/acylaminoacyl-peptidases (ISS) [Ostreococcus tauri] (GB:CAL55196.1); similar to aminoacyl peptidase-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21362.1); similar to hypothetical protein XAC0805 [Xanthomonas axonopodis pv. citri str. 306] (GB:NP_641157.1); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain TolB, C-terminal; (InterPro:IPR011042) 0.587590934137309 6.43552190219066 0.000162945850673273 1 7.88308796979867 17.9281163166211 0.587590934137309 0.0888342839617713
AT4G25000_at 6.38249387200197 6.97437984433071 8.43886737144256 8.1465984927605 7.75592316758993 7.65556278059109 3.97894182334346 4.78788034435506 3.55643290085344 3.46833629088677 3.32131332744451 3.07174934453283 2.9447642805122 3.4502159272399 2.83103311753192 2.93671271335108 3.29035734388872 2.54228954844353 4.02916379938314 0.346911332134431 0.346755922550837 0.361596292068869 0.349429645549786 0.351702603101611 0.360560947343496 0.331260386594513 0.334324337206021 0.331260386594513 0.332654950512255 0.33547471278024 0.333164038511549 0.331260386594513 0.331260386594513 0.33459486798823 0.333001820807129 0.336850297455561 0.334391750626337 0.331260386594513 4 4|0 -|/ 12852126 12852697 12852476.1 12851979 12853855 - gene protein_coding_gene FALSE TRUE AT4G25000.1 AMY1 (ALPHA-AMYLASE-LIKE); alpha-amylase Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). similar to AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G76130.1); similar to alpha-amylase [Ipomoea nil] (GB:BAC02435.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase beta-sheet, C-terminal; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046) 0.916112051040928 6.43466920139165 0.000163099554392369 1 7.88234427488995 10.1316803524232 0.916112051040928 0.181518078738451
AT4G39860_at 5.10920100416325 4.60256825457905 5.3907593220121 5.2942502921845 6.01090065548935 5.35929681124273 4.13935217914236 4.34799000615783 4.27147209463847 3.82049708612155 4.4914201177692 5.00718863256113 3.96868174535886 4.5689118455303 5.0144099919913 4.97922811737065 4.12736207061736 4.56144184071825 3.83684529601806 0.230925100238819 0.224363920009457 0.222778376194098 0.222462032318791 0.221389807907983 0.227661646046694 0.219906684599368 0.226890439997095 0.220177853234208 0.217876316109354 0.213807165138118 0.229476928906364 0.219261377193018 0.222620397891273 0.219369971877392 0.217678338957189 0.219504075061542 0.218992278870083 0.215175968940122 4 4|0 +|/ 18500829 18501410 18501116.2 18499747 18501636 + gene protein_coding_gene FALSE TRUE AT4G39860.1|AT4G39860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78150.2); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os04g0455600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052962.1); similar to Os02g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047207.1) 0.788791481100911 6.4301209458137 0.000163922095297679 1 7.87837556661832 9.31484083437089 0.788791481100911 0.1482734185903
AT4G36030_at 5.51136834257753 5.52090615983176 5.59885516516753 5.90005623128671 5.79668527940103 6.23108861404634 3.98682812877125 4.33727358506593 5.62317078666538 4.38248573258031 5.6722809518901 5.24498046183886 5.28765548806557 5.53747079549628 5.06794649349135 5.50270026744073 4.4943759025426 5.21293127432236 4.96470524206039 0.210416804974054 0.207467833541416 0.210329280734014 0.207467833541416 0.212430007491023 0.21458882568795 0.212037046210062 0.213725342412909 0.225660815624005 0.214599106176836 0.208897294273422 0.212330703586056 0.216938887283269 0.212061051082277 0.213897387834778 0.207467833541416 0.219636673639811 0.213192456054082 0.210197410794757 4 4 - 17045088 17045659 17045420.545 17044948 17047318 - gene protein_coding_gene FALSE TRUE AT4G36030.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G34940.1); similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66200.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE92291.1); similar to Armadillo [Medicago truncatula] (GB:ABE77933.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34223.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.652499692848868 6.4241597147413 0.000165007075384330 1 7.87316912001313 10.4817143340125 0.652499692848868 0.109767868972263
AT1G01730_at 8.21099409580647 8.48218548157617 8.49923130459882 8.72338941872483 8.83043154634594 8.91846030812688 6.97797534449780 7.3498582203636 6.93568596674671 6.40669391654598 6.6780109388411 6.68580976316047 6.91873204537582 7.29879649621571 6.54137457168458 7.02617462297479 7.13005581492044 6.68071006739642 6.6921272155348 0.198987041836751 0.198987041836751 0.200405343536834 0.203225819318933 0.209137534533413 0.209753569795020 0.211638341618908 0.201707755473015 0.212815654104541 0.209246236734338 0.199899309281368 0.198987041836751 0.202822004505702 0.212331424556439 0.205962686862249 0.201985721922274 0.200526937460552 0.203786098149058 0.204755119858106 1 1|0 +|/ 271105 271846 271524.3 270967 272021 + gene protein_coding_gene FALSE TRUE AT1G01730.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28388.1) 0.589706933008388 6.42401150272038 0.000165034151151133 1 7.8730396044235 15.0231292515119 0.589706933008388 0.089894787854562
AT4G28760_at 6.64381678402633 7.25555101892333 5.33383065031186 5.58323367474707 6.76151384614704 6.36956387664231 7.73099201348275 7.28468369621854 6.68487716953773 7.54827646779722 6.81378245180523 6.95393708713497 6.80621220243879 6.78155983554815 6.64694518106017 7.06951776306167 6.76642652426821 7.02786304293733 7.54129366222025 0.232195119785016 0.220335701656829 0.241532948295710 0.221942947167892 0.216880449544533 0.236197951831188 0.216880449544533 0.225458341503737 0.243655620726738 0.226298454595363 0.224580161102909 0.219487444677592 0.216880449544533 0.228112295352573 0.236843385480702 0.216880449544533 0.233358711061152 0.224586630257984 0.223464003166378 4 4 + 14211231 14211788 14211489.182 14207466 14212056 + gene protein_coding_gene FALSE TRUE AT4G28760.1|AT4G28760.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20240.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89949.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain gb def: Hypothetical protein At4g28760 (PTHR21726:SF7) -0.80829697751029 -6.42345485072379 0.000165135885402389 1 7.87255314200997 13.6786130005042 -0.80829697751029 0.153740007780476
AT2G38860_at 9.6798962390531 9.83287299795932 10.3540247408453 10.2031708173224 9.37379970260682 9.09609555180418 7.84161968402086 7.5605915047527 7.64333487860379 7.97209083902165 7.81160321700209 8.32651818591657 7.77964823247469 7.910198223941 7.53228033999217 7.46090391537103 7.67946039380036 7.50076638489076 7.39088066388759 0.197867217764924 0.193986207234815 0.198867582880126 0.199171346138732 0.193169066228874 0.187789527638055 0.184860561939486 0.189146218266083 0.192308633817094 0.190159206550004 0.192444817446344 0.180901656780357 0.192779509128297 0.186377933195491 0.187258929746475 0.199877849391863 0.188046042815650 0.189329677720229 0.212743703970929 2 2|0 -|/ 16240712 16241555 16241087 16240393 16242313 - gene protein_coding_gene FALSE TRUE AT2G38860.1|AT2G38860.2 YLS5 (yellow-leaf-specific gene 5) Encodes protease I (pfpI)-like protein YLS5. similar to DJ-1 family protein [Arabidopsis thaliana] (TAIR:AT3G54600.1); similar to Os04g0671700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054220.1); similar to Os11g0591600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068186.1); similar to unknown [Oryza rufipogon] (GB:ABC73064.1); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) 0.554715582267048 6.4212167485203 0.000165545618766504 1 7.87059676705163 16.9522294825512 0.554715582267048 0.0778275189842959
AT4G24990_at 8.73063143718362 8.82470654684349 9.0191474240529 9.23240754646169 9.35384944763156 9.22427321450298 8.09552305259525 8.43694120023394 8.56398892801648 8.03002801778875 8.88978732339155 8.51043815614582 8.68951167914454 8.84693875996642 8.3111707540518 9.0357832251757 8.52238246320064 8.63080924898426 8.22120526579254 0.159068623122907 0.159401687635094 0.155993867159389 0.159160922447797 0.164419872087288 0.157808311501403 0.163402756635499 0.165668512591390 0.160267091947690 0.163093494074325 0.153949795295926 0.155593782071027 0.152798252757107 0.161244350741213 0.158535132094340 0.154204669383569 0.158429389350024 0.165054095279016 0.167305125538800 4 4|0 -|/ 12849989 12851207 12850893.778 12849719 12851643 - gene protein_coding_gene FALSE TRUE AT4G24990.1 ATGP4 (Arabidopsis thaliana geranylgeranylated protein) geranylgeranylated protein ATGP4 Identical to Membrane-anchored ubiquitin-fold protein 3 precursor (Membrane- anchored ub-fold protein 3) (AtMUB3) (ATGP4) (MUB3) [Arabidopsis Thaliana] (GB:Q9SW27;GB:Q9ZRD4); similar to ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT3G26980.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); similar to Os02g0750600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048133.1); similar to Os04g0393300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052648.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.546665406503272 6.41800728320604 0.000166135130968038 1 7.8677899586899 17.3403567029166 0.546665406503272 0.0749720974946637
AT1G48650_at 7.92072275588364 8.16028280481218 7.97637630055567 8.09705235941087 8.02671443789492 7.8361044574081 9.12083800826962 9.15996937791128 8.42463743588269 8.1505803319606 7.39550029038861 7.97120919611307 7.78259683130671 8.00660536717777 7.71593301293938 8.35956916631913 7.8767199653315 7.88724474025592 8.24675608078184 0.140345933461334 0.141451559288320 0.143929058448332 0.138402649607548 0.143106646778347 0.146404930505411 0.144257556929603 0.140322585490480 0.151888444003788 0.135199688200168 0.146933099439854 0.144143859189577 0.142349851027275 0.135150852605750 0.14155076185425 0.135150852605750 0.153170255847270 0.139925787869800 0.137603898025783 1 1 - 17993391 17993708 17993562.636 17992826 17998994 - gene protein_coding_gene FALSE TRUE AT1G48650.1 helicase domain-containing protein similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G04895.1); similar to helicase domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35920.1); similar to ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G01130.1); similar to putative helicase [Oryza sativa] (GB:AAL58955.1); similar to putative DEAD/H box polypeptide 36 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52491.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98878.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.50298015477391 -6.41665093978238 0.000166384955763242 1 7.86660330506521 16.3614643648203 -0.50298015477391 0.0573474948870025
AT1G80440_at 11.3090274781685 11.6233974367812 11.7688997517372 12.0172958969027 12.4412999816628 12.2535206223302 10.9116927549692 11.1034893168602 10.8015436307706 10.9244256329951 10.8641409038172 10.7728830815612 11.5414563122658 11.2727776351264 10.2634788471220 11.4780580146589 11.7558497038583 11.1964707008330 10.9353590718388 0.0760858435380717 0.0755590324325421 0.0801251285232362 0.0799790589043139 0.076033485839826 0.0840080430721185 0.0775178659046562 0.0784164311271882 0.0885820430168415 0.0787110869153035 0.0807463951424627 0.0754579858794827 0.076928791712754 0.0784325234218751 0.0776965317417788 0.0750771109139185 0.0836435201327489 0.0822301449719096 0.0774289691038373 1 1 + 30247182 30247684 30247422.727 30246499 30247963 + gene protein_coding_gene FALSE TRUE AT1G80440.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G15670.1); similar to kelch repeat-containing F-box-like [Oryza sativa (japonica cultivar-group)] (GB:BAD25000.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.569691135583629 6.41142723035260 0.000167350971435052 1 7.86203048186213 22.6937023274799 0.569691135583629 0.0834575964358108
AT1G71820_at 7.83153565887373 8.04823919343427 8.17515488617932 8.02043325657845 8.19917576146123 7.74307100490796 6.62626188396118 7.33603342858427 7.03804380203066 6.70242202831886 8.4415128370217 8.00304968617447 7.7641879707542 8.04962813844213 8.08536907180848 7.93297233979368 7.394468565787 7.0782077073267 6.68641690202683 0.184553303540213 0.175822254490691 0.177666786155862 0.175822254490691 0.175964472078952 0.179070764614084 0.177404590320118 0.181375982532537 0.182808835148759 0.17840663134977 0.179996913465388 0.175822254490691 0.181319399844123 0.187397064407825 0.180414747461537 0.175822254490691 0.188049119923043 0.177979684424826 0.186332811256268 1 1|0 +|/ 27019368 27020355 27019864.1 27013296 27020770 + gene protein_coding_gene FALSE TRUE AT1G71820.1 similar to Exocyst complex component Sec6 [Medicago truncatula] (GB:ABE85247.1); similar to Os02g0749500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048127.1); contains InterPro domain Exocyst complex component Sec6; (InterPro:IPR010326) 0.804327407457403 6.41079008670368 0.000167469218605747 1 7.86147244052613 15.0738058594629 0.804327407457403 0.153102664946276
AT1G07650_at 9.16025410737439 9.1023947702051 9.18774267765169 8.94863025851566 9.42132714663512 9.12476097554697 7.32974060405154 7.03632948910718 8.55032695120338 7.96615250578277 8.73107581554746 8.70787134345444 8.0435994781629 8.70094312256084 8.37493811732348 8.13761062436442 8.13612764202297 8.83219210263463 8.47446107060332 0.142071328933127 0.142215083986582 0.146279429272686 0.146219124739222 0.140732371982965 0.146673372093305 0.162695553887596 0.153391550467114 0.146466964801442 0.148960156720762 0.140732371982965 0.140732371982965 0.145837509376528 0.149070938395945 0.144393594561495 0.140732371982965 0.156878259688001 0.148395422744158 0.142357865957040 1 1 - 2359841 2360517 2360085.909 2359546 2366558 - gene protein_coding_gene FALSE TRUE AT1G07650.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53430.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53440.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14840.2); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.570583396732606 6.40997023948529 0.000167621508641802 1 7.860754286616 17.0580766486136 0.570583396732606 0.0838135070631392
AT3G01670_at 5.17686440280467 5.5754137797979 4.06622700644973 3.98610655105188 4.15961245397184 4.80210217093738 5.92579626158062 6.11918948806879 6.08541305326468 5.6649738632901 6.50832492243741 7.22509117090073 5.72312259152503 5.99661649915993 6.42641412229564 6.379822607254 4.68932812389317 5.41065615813127 6.49119617369665 0.223472326615269 0.221640419110353 0.248922476172627 0.232239816455209 0.224802452341346 0.228408987951509 0.225655018500642 0.221804225196161 0.227876334611041 0.224260835118079 0.221048511874272 0.220510268909419 0.226978868364641 0.224918980774255 0.233424742106292 0.218508352968105 0.23239271125296 0.226122288302958 0.21811455041715 3 3 + 249674 250242 249979 247241 250477 + gene protein_coding_gene FALSE TRUE AT3G01670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01680.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32254.1) -0.74070480488056 -6.40924581707761 0.000167756199677121 1 7.86011963499051 11.0391388749329 -0.74070480488056 0.135762996250278
AT3G18080_at 12.3382360751016 12.3819009878899 11.4527995794962 11.2677093696707 12.0406142925689 11.8404445586180 11.0675114371761 10.9075876145799 10.9454755515030 11.1247851633358 12.1391368146633 12.3036918372086 11.9673247629441 11.9471313705176 12.0461657337272 11.6969945675173 11.6073569701428 12.1234146279967 10.816533787563 0.0783230705064343 0.075402031118166 0.0775877561004322 0.0779998986323043 0.0764855631002137 0.0829833284867737 0.0778066453714473 0.0785229340240702 0.0873789782875237 0.077654433397277 0.0785215929828823 0.075813019767023 0.075402031118166 0.0819488688086694 0.0768008659278866 0.0762140328057784 0.0788596012641245 0.079649929738461 0.076127174340819 3 3|0 +|/ 6193177 6194077 6193641.286 6191563 6194458 + gene protein_coding_gene FALSE TRUE AT3G18080.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G18070.1); similar to beta-mannosidase enzyme [Lycopersicon esculentum] (GB:AAL37714.1); similar to beta-mannosidase 3 [Oncidium Gower Ramsey] (GB:ABC55716.1); similar to beta-mannosidase 2 [Oncidium Gower Ramsey] (GB:ABC55717.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.496610086428657 6.39508948836499 0.000170412266294537 1 7.84770134024374 23.1326839492495 0.496610086428657 0.0552173371769588
AT4G20860_at 5.76749644564177 6.61555497783473 6.30140477465826 6.43513658950326 7.2836026892267 6.90769003197704 3.87904148666278 4.12861056360947 3.30246165245426 4.30417680142815 3.41627949527410 3.22306583979962 3.95124162159044 3.59238554307326 3.32908606820616 3.53742712141271 5.46463227742368 3.88694416406987 3.55015608483246 0.289571048351771 0.291230199298955 0.298862319612615 0.296967022481192 0.294866374936721 0.301726004215847 0.282946580222247 0.288277480185226 0.282946580222247 0.292082695035844 0.282946580222247 0.285133347773472 0.282946580222247 0.283686745566141 0.290472880213723 0.282946580222247 0.282946580222247 0.283414490864579 0.290468256609767 4 4 + 11173763 11174173 11173943.182 11172633 11174478 + gene protein_coding_gene FALSE TRUE AT4G20860.1 FAD-binding domain-containing protein similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G44360.1); similar to FAD-linked oxidoreductase 1 [Glycine max] (GB:ABC41950.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951); contains InterPro domain Oxygen oxidoreductase covalent FAD-binding site; (InterPro:IPR006093) 0.857741953177701 6.39421554813058 0.000170577745160807 1 7.84693368489662 9.67434933451985 0.857741953177701 0.167843623024209
AT1G18480_at 5.73975075703978 5.93375908255708 5.87013738652453 6.145193608496 6.7296497205895 6.315767371261 5.51079123648253 5.47803181605749 4.45654460942344 4.19082873988179 4.80832159050834 4.9561020436727 5.16886220879253 5.24543807851502 4.74603589626382 5.15495648897542 4.70806135562936 4.57337690148549 4.34586210144825 0.238694012248491 0.227864313876197 0.231900893055128 0.239138934143924 0.231591971971808 0.250371551251018 0.232337671519014 0.227864313876197 0.235164612744893 0.231923842277607 0.238796591876005 0.227864313876197 0.227864313876197 0.242451067062243 0.231897402817591 0.23497903070001 0.239624643046904 0.245839089167666 0.228707638699222 1 1 + 6362233 6362767 6362489.091 6361622 6363000 + gene protein_coding_gene FALSE TRUE AT1G18480.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G07010.1); similar to Putative [Brassica oleracea] (GB:AAW81738.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.594334817789689 6.38940197871877 0.000171492352962102 1 7.84270340876556 10.5909965244084 0.594334817789689 0.0924939432809651
AT4G35320_at 3.00945942994561 3.08740067461503 1.97906288986636 2.21334174629267 2.68256407161752 2.86822321031558 6.20406824506622 6.59649192963665 5.27854281577090 5.25388236454782 7.5999696120265 6.62362186403116 6.75607206154337 6.84925120610401 6.73502411550066 5.67967547663073 4.71558673884091 6.2685605223209 5.2696627972712 0.313792910629921 0.305143978097346 0.345139855870364 0.317671813978535 0.307526888900843 0.309961528218477 0.295164207112934 0.298215159631602 0.309456339593917 0.294189564431659 0.294189564431659 0.296940495992644 0.299301536627494 0.294189564431659 0.294189564431659 0.295919700790754 0.296451171530197 0.296901459507994 0.294189564431659 4 4 - 16806176 16806562 16806342.364 16805874 16806660 - gene protein_coding_gene FALSE TRUE AT4G35320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17300.1); similar to Os02g0715300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047925.1); similar to Os08g0511400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062213.1); contains domain N-terminal domain of cbl (N-cbl) (SSF47668) -0.576224774932351 -6.38845559251094 0.00017167280477772 1 7.84187128190542 9.41549295408016 -0.576224774932351 0.0864281292839401
AT1G19310_at 8.27350189591532 8.49720077338335 8.38594921144593 8.46222162151005 8.92087744878981 8.77085474027374 7.54047950992833 7.56620321299493 8.47888287212078 7.4746775894672 8.33642810574626 8.27647659205431 8.3063703057168 8.48342504278221 7.98721578725142 8.1091532082526 7.66624395389105 8.02659754664106 7.59556782295983 0.149985077212072 0.140417690748686 0.143253041513716 0.150073717295998 0.142833719582100 0.152848429131508 0.151262984526606 0.143987827785759 0.160367921922558 0.150176063210365 0.144830389562043 0.147646472971330 0.145995620833846 0.145519270163240 0.148396210156937 0.144595102454270 0.162766543105575 0.143543351137545 0.145142588952095 1 1 - 6676439 6676930 6676687.182 6676225 6677664 - gene protein_coding_gene FALSE TRUE AT1G19310.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G23780.1); similar to Os12g0636000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067361.1); similar to Os01g0766200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044354.1); similar to putative RING finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53343.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.48245439852938 6.387255085183 0.000171902011063568 1 7.84081551552612 16.3015101747675 0.48245439852938 0.0486487380013908
AT1G51700_at 7.42563379706267 7.56397897822369 8.40923864664214 8.54951099065331 8.27653410864158 8.30357499210497 8.83712569274013 8.8389638740119 7.35131829574597 7.50159912443654 8.05781337792466 8.22180675024983 8.14348712993202 7.95753008214208 7.69092458381611 8.07377498021629 8.67512005567089 7.9631442634781 7.34773712322006 0.197281391745459 0.186293593160789 0.194579880079209 0.189038182570021 0.191136985583594 0.191269473611851 0.190042441301800 0.187560106760389 0.192723688503389 0.194594325837856 0.191869995488711 0.186293593160789 0.186293593160789 0.189028028391601 0.186444796779037 0.186293593160789 0.200868838181128 0.199678541682120 0.202613428649175 1 1 + 19177936 19178471 19178204.091 19177738 19178857 + gene protein_coding_gene FALSE TRUE AT1G51700.1 ADOF1 (Arabidopsis dof zinc finger protein 1); DNA binding / transcription factor Encodes dof zinc finger protein (adof1). Identical to Dof zinc finger protein DOF1.7 (AtDOF1.7) (DOF1.7) [Arabidopsis Thaliana] (GB:O82155); similar to ADOF2 (Arabidopsis dof zinc finger protein 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G21270.1); similar to Dof1 [Glycine max] (GB:ABI16003.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.458010535397731 6.38696904611273 0.000171956672487034 1 7.84056393034343 16.0246543020415 0.458010535397731 0.0344158295866959
AT1G53170_at 7.30205749253616 7.62998082363649 7.75413878231542 8.03591765450986 8.02109410554932 8.28617549274848 7.4310753255679 7.9517091901319 7.4569447942748 7.54370477463375 8.1846750048103 8.58792121939185 8.758953350445 8.05558508639575 8.27662145693228 8.7570927075318 8.70755077781916 8.2862578348468 7.47443079474516 0.157927747420383 0.158485774050437 0.174784752221046 0.168657648143385 0.159301587985991 0.165587479173629 0.160708921216162 0.156719955964727 0.180174009490166 0.168969615681198 0.167394524659727 0.155070334543461 0.163045703947955 0.169631695353871 0.158488851661696 0.155070334543461 0.173279124537762 0.167528868994363 0.161909788320453 1 1 - 19825216 19825697 19825427.364 19825005 19825920 - gene protein_coding_gene FALSE TRUE AT1G53170.1 ATERF-8/ATERF8 (ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional repressor encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-8). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. Identical to Ethylene-responsive transcription factor 8 (Ethylene-responsive element-binding factor 8) (EREBP-8) (AtERF8) (ERF8) [Arabidopsis Thaliana] (GB:Q9MAI5); similar to ATERF-4/ATERF4/ERF4/RAP2.5 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 4), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT3G15210.1); similar to ethylene responsive element binding factor 4-like protein [Thellun (GB:AAM19703.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.702882263016521 6.38656076847938 0.000172034726486949 1 7.84020480854446 15.7732814255359 0.702882263016521 0.125778816246143
AT1G07180_at 8.70497514276165 9.23340738150261 8.64873454653188 8.83256736932966 8.8984065351357 8.25543091388378 10.6829488808873 10.8244057452301 9.57574169622917 10.5696386483277 9.77046047908828 9.93448632799978 9.9758537877369 10.0401940163744 9.62571015141998 10.4613035900857 9.5678911909163 9.73900683568275 10.6400250841272 0.151203665394450 0.146160605646751 0.167530852822559 0.148797281959655 0.155684318875384 0.178348902111948 0.148851279661579 0.146160605646751 0.163754466867968 0.146160605646751 0.157798759724129 0.146160605646751 0.146160605646751 0.149051390978340 0.150420410025555 0.146160605646751 0.163498403016581 0.154902574110099 0.146160605646751 1 1|0 +|/ 2205948 2206731 2206409.5 2204319 2206933 + gene protein_coding_gene FALSE TRUE AT1G07180.1 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1); NADH dehydrogenase Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. similar to NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G29990.1); similar to putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum] (GB:CAB52796.1); similar to Os07g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060003.1); similar to Os01g0830100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044694.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.787543979261765 -6.38269146555852 0.000172776389186861 1 7.83680008355802 19.3356921178950 -0.787543979261765 0.149515907774707
AT4G33050_at 9.92113659885364 10.1389568623512 11.0979839243640 11.0734837706532 10.4091649339650 10.0163863705195 8.29469570211397 7.92789046981275 9.30122292259182 8.06586922954207 8.13358213789494 8.65317096065534 7.24027493270467 8.2889302390974 7.52793299707871 8.21093376045309 7.9588127971143 8.56720690008001 7.87720438967903 0.161804983881990 0.159700052614554 0.159557594208680 0.160487196188483 0.159447588134307 0.156085934312950 0.152070337120374 0.154960059368808 0.164502371465459 0.152162840671002 0.149055670348764 0.157969695631753 0.176786410813344 0.158301637737339 0.156073120390298 0.14969188952518 0.172444402847554 0.151916074164771 0.161154905879621 4 4|0 -|/ 15944649 15945315 15944947 15944325 15947029 - gene protein_coding_gene FALSE TRUE AT4G33050.1|AT4G33050.2|AT4G33050.3 EDA39 (embryo sac development arrest 39); calmodulin binding similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT2G26190.1); similar to IQ calmodulin-binding re (GB:ABE79293.1); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to Os05g0197300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054871.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048)|similar to calmodulin-binding family protein [Arabidopsis thaliana] (TAIR:AT2G26190.1); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to IQ calmodulin-binding re (GB:ABD28516.1); similar to Os05g0197300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054871.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.618212459144845 6.38223985696975 0.000172863181428302 1 7.83640254774696 18.1036478813654 0.618212459144845 0.100441350725819
AT1G74250_at 7.35355522027568 7.3066557382877 6.94782872737901 6.66280760930446 7.52965926689444 7.53100522100975 7.53988872626737 7.15824820218971 7.31840241687063 7.5417454856767 6.53581813571475 6.50684106387797 6.81600094567762 6.30680906331069 6.22480226114375 6.31342264890809 6.7613658434849 6.66059705188647 7.56172889783102 0.207026375526676 0.214061201164969 0.209517298187895 0.213947920660682 0.218676798326773 0.214973617361195 0.212827857514028 0.208426171877231 0.219475175176823 0.208052658109660 0.217460222059246 0.211947912679686 0.217373913601244 0.222726950401469 0.207026375526676 0.21100024133698 0.217144686064257 0.228420909376306 0.208396135555634 1 1 + 27925342 27926036 27925641.182 27923989 27926075 + gene protein_coding_gene FALSE TRUE AT1G74250.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT3G11450.1); similar to DnaJ domain containing protein [Tetrahymena thermophila SB210] (GB:XP_001016844.1); similar to Os12g0502700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066831.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.565006786158563 -6.37883736296212 0.000173518629542561 1 7.83340643331381 14.248539119056 -0.565006786158563 0.0828293749198988
AT3G02790_at 7.52240833043317 7.67675618441209 5.8113651470717 5.83677772769308 6.50082515441779 6.80367729192406 6.64427681882196 7.0988984198147 7.43055689025888 7.01811056361394 7.30103186311783 7.69301637051015 6.82960657641297 7.1355915923533 7.94227260795697 7.48129998861272 6.4781019993791 6.2039977796909 7.62599357258261 0.195032375366844 0.192895602718446 0.201523931565390 0.199854085012976 0.194157572460056 0.189528214866723 0.192159881989787 0.195817322393476 0.204898339227349 0.189528214866723 0.201381945170052 0.193048116646771 0.189528214866723 0.206625777366428 0.192315648173303 0.189528214866723 0.20209903848917 0.197972604295582 0.19380949953918 3 3 + 604981 605209 605099.364 604852 605428 + gene protein_coding_gene FALSE TRUE AT3G02790.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G16470.1); similar to hypothetical protein MtrDRAFT_AC148171g28v1 [Medicago truncatula] (GB:ABE89815.1); contains domain C2H2 and C2HC zinc fingers (SSF57667) -0.611264551495694 -6.37873740128197 0.000173537927129262 1 7.83331838356665 13.9825407290266 -0.611264551495694 0.0983324066050318
AT3G05220_at 9.94814070742472 9.83627957606581 9.62464924708857 9.29066017997042 10.1674626055731 9.83102113039223 8.54923597875055 8.62233840836925 9.58976407325307 9.07077882399084 10.0987912062239 10.1756977305797 10.1826063592197 10.1753573440763 9.92668165398708 9.95767497412482 9.40087826863567 9.9070525838356 9.31180577924317 0.0838518005239119 0.0828573964565327 0.0879248445982596 0.0867569610326925 0.0858262442075153 0.0864291138151082 0.0886127919683174 0.0882104476749818 0.082980883608672 0.0889702303606131 0.0825184043718764 0.0846724090541026 0.0836893779563987 0.0873919059335526 0.0852247859427624 0.0829348512840807 0.0942327685013195 0.0851237090385977 0.0860614725683414 3 3 + 1490614 1491111 1490884.636 1488601 1491326 + gene protein_coding_gene FALSE TRUE AT3G05220.1|AT3G05220.2 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE90127.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160)|similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE90127.1); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160) 0.571712956346575 6.37671678681765 0.000173928512060078 1 7.83153822422396 19.1348278494949 0.571712956346575 0.0852368341596992
AT1G18740_at 7.55243298043201 7.58544589334246 8.151285522521 8.48537043936503 8.30820801553172 8.30526032109972 8.0265871944265 8.18455782315394 7.54050471151682 6.38475570199109 8.02622888773866 7.4346971353314 7.67532659377369 7.47009837419688 6.52187477673221 7.61626710600683 7.65223749203644 7.09324950874108 6.71771442502749 0.202313617053398 0.202313617053398 0.207156180758706 0.213688706887950 0.202313617053398 0.205252888527473 0.202313617053398 0.205262370637365 0.228530991443793 0.217173332721817 0.210839237531942 0.202313617053398 0.209878092353064 0.214306172195988 0.221980536501519 0.202313617053398 0.202313617053398 0.219202507746963 0.214669868611794 1 1 + 6464691 6464945 6464820.091 6463985 6466445 + gene protein_coding_gene FALSE TRUE AT1G18740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74450.1); similar to Protein of unknown function DUF793 [Medicago truncatula] (GB:ABE83157.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) 0.515265486632578 6.37068417629132 0.000175100369621589 1 7.82621974146475 15.2335130723164 0.515265486632578 0.0642091089484838
AT1G73110_at 7.97070697153125 7.9016427229658 7.19056016480519 6.99805922893218 7.84411791524306 7.33080122730297 8.375544765714 8.4104249473854 8.31854879915707 8.48079275829702 8.21040347198598 8.40672339248336 7.81816159331452 7.86255343990377 8.56665151295003 8.1247268174916 7.43511856144948 7.58870745462164 8.35040056622726 0.161793214803766 0.161927871034957 0.177341354168276 0.170561003122934 0.157916097592163 0.169117846567530 0.161301388009289 0.162196441724981 0.174299356670665 0.164969357292566 0.159705502830305 0.156848738667728 0.159500142931845 0.159125579826420 0.163985821439822 0.16036653181796 0.186292756995742 0.170278397683988 0.156311936330961 1 0|1 /|- 27498071 27498844 27498520.875 27497782 27500539 - gene protein_coding_gene FALSE TRUE AT1G73110.1 ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative similar to RCA (RUBISCO ACTIVASE) [Arabidopsis thaliana] (TAIR:AT2G39730.3); similar to Os04g0658300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054128.1); similar to Rubisco activase 2 [Mesembryanthemum crystallinum] (GB:AAZ41846.1); similar to OSIGBa0132E09-OSIGBa0108L24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67790.1); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.602655905931833 -6.37021364793627 0.000175192135292958 1 7.82580467641547 15.9451713205277 -0.602655905931833 0.095813091080894
AT2G45170_at 9.25180528852571 9.4299167664372 9.56414144598764 9.62227067167115 10.3819619899666 10.0034971394410 8.38740080574824 8.37368870688957 9.57946324856476 9.12872602538316 9.85914833754416 9.26812297737164 9.29844184062802 8.96221228514246 9.02357394726161 9.82146347139022 9.39369001349385 8.938604526957 9.12609569141757 0.119831685628925 0.120699193834968 0.121851377670995 0.120101054609529 0.124462327871819 0.122201398160934 0.120093762060400 0.126492810486125 0.129545661670991 0.116078189645945 0.125770936287244 0.116178865945940 0.125799077979026 0.139034917596834 0.116560549008575 0.116078189645945 0.125064988460138 0.124718784054567 0.123312997253220 2 2|0 +|/ 18631812 18632569 18632409 18631339 18632791 + gene protein_coding_gene FALSE TRUE AT2G45170.1|AT2G45170.2 AtATG8e (AUTOPHAGY 8E); microtubule binding Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes. similar to ATG8F (AUTOPHAGY 8F), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G16520.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein [Cicer arietinum] (GB:CAD33929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.537413553192443 6.36697291099931 0.000175825601972136 1 7.8229450083684 18.6762114335478 0.537413553192443 0.073119715925175
AT2G18690_at 9.21294535872032 9.48170393053332 9.6263411253097 9.85771634697935 9.49386026300823 8.35854889061376 3.67619507881918 4.00521639855039 6.64208957326108 4.48853028128547 4.12121333774048 6.06497032686882 3.19602972392939 4.94431302815776 5.29952066883021 3.45912054220761 3.65874998947965 3.4974498122828 3.73852618939613 0.346297014824958 0.34122511085677 0.345386669688502 0.347181235414584 0.34133222927784 0.340817430643657 0.322910524275083 0.327326766611286 0.330974738480534 0.32811927607508 0.322910524275083 0.322910524275083 0.322910524275083 0.322910524275083 0.322910524275083 0.328190346366276 0.323884359481359 0.337682423613562 0.328441426439283 2 2 + 8105122 8105631 8105293.818 8104502 8105909 + gene protein_coding_gene FALSE TRUE AT2G18690.1|AT2G18690.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18680.1); similar to Os08g0107100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060795.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90086.1) 1.03194518943075 6.36337979518433 0.000176530889160015 1 7.81977249433272 12.5823423957341 1.03194518943075 0.213563240468503
AT2G29990_at 7.81086913407132 8.01052248632956 8.47274801986296 8.43764549890507 7.53577670359162 7.03960286828394 6.4911526907516 6.57642061822554 5.90734785750324 5.89283554915922 6.12330228152396 6.16833993375712 6.40884931372457 6.76073416151991 5.55691686648353 6.74600610671391 6.35446631321909 6.52492536278535 5.56263908945479 0.237865294927068 0.231868903111514 0.241814872435276 0.234236235647024 0.229856323150298 0.228896036507502 0.234192700234648 0.227855649849437 0.228523238366425 0.231291863333429 0.227363192682698 0.226496360459768 0.228839737707642 0.230790230179919 0.236069835209147 0.226496360459768 0.243922557269545 0.227502148081834 0.246502358990621 2 2|0 -|/ 12800640 12801437 12801033.6 12800417 12802990 - gene protein_coding_gene FALSE TRUE AT2G29990.1 NDA2 (ALTERNATIVE NAD(P)H DEHYDROGENASE 2); NADH dehydrogenase similar to NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G07180.1); similar to putative internal rotenone-insensitive NADH dehydrogenase [Solanum tuberosum] (GB:CAB52796.1); similar to Os07g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060003.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.596018542038287 6.36108761432238 0.000176982440124088 1 7.81774758522708 13.6058672730885 0.596018542038287 0.0939214617736107
AT3G23410_at 7.47802997326192 7.77893193617304 7.99655289080684 7.92687480489086 8.05186501178283 8.14379438883735 7.15291559247997 7.2135029760788 6.99768453833465 7.65721300741308 7.95989785105751 7.52631105912167 7.22220907655737 7.5561904513149 7.37974306999261 7.7211544103163 7.00649801486439 7.65348798691841 6.74405857126761 0.173485269785768 0.170882836305437 0.163161865994633 0.170494832322241 0.166233883396513 0.160879815873858 0.169703372663899 0.172406355091451 0.175709603736768 0.161586049934569 0.166694593986322 0.173521324262014 0.163800754378938 0.168635167615449 0.166612555794275 0.16591735623519 0.162742571069356 0.162978213697600 0.160062949287927 3 3 + 8385437 8386004 8385785.182 8382812 8386155 + gene protein_coding_gene FALSE TRUE AT3G23410.1 alcohol oxidase-related similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT1G03990.1); similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT4G28570.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31024.1); similar to Os02g0621800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047464.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31021.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Long-chain fatty alcohol dehydrogenase; (InterPro:IPR012400); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.497063886130243 6.35814263805016 0.000177564451348968 1 7.81514480166742 15.0358943779671 0.497063886130243 0.056744745216359
AT2G03550_at 8.83796053816521 8.9502932113499 8.47466828590824 8.4090310045214 8.7554661289756 8.50937205874698 9.62480781375995 9.78496007622954 9.11040388854138 9.65849788402886 8.81776520113527 8.82578747861821 9.21464885755024 9.32574975056074 8.65195948723119 9.5408535843192 9.29893228421262 9.11425042567554 9.2031438456565 0.105144590734113 0.112286515772059 0.108517700307832 0.110053116589167 0.108177930666421 0.10966359436396 0.113329446136223 0.113750229012754 0.113708805299797 0.105262112916137 0.107706089184830 0.105147001685114 0.107035006090736 0.105144590734113 0.109020546926853 0.105144590734113 0.116756450005215 0.110464830582084 0.113305360221289 2 2 + 1077421 1077855 1077644.727 1077033 1078080 + gene protein_coding_gene FALSE TRUE AT2G03550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48690.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48700.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83378.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.493821431375394 -6.34920532304131 0.000179343621022171 1 7.80723772087255 18.1296991845763 -0.493821431375394 0.0555766664684817
AT4G14360_at 7.72239394099356 7.59975495720732 6.61373127439566 6.76467817070164 7.61383314920017 7.52848405442142 8.83591126914868 8.7651618171562 8.64295154889311 8.41433984762478 8.95426665245309 8.98419785577557 8.60779683979759 8.85068757299013 8.96253808376132 8.32333846657021 7.9490587385673 8.51263435771359 8.34124550703319 0.171067670106136 0.173505314643381 0.178279293481871 0.181385362487979 0.177211093197282 0.183390551103283 0.188910437523211 0.175201295435947 0.188638147528890 0.168399993121507 0.170308490494024 0.171664421741661 0.174394266754009 0.178717162897238 0.167040595361084 0.170524779639803 0.180899304469837 0.184281897979332 0.167676039140332 4 4 - 8267945 8268616 8268212.545 8267285 8271117 - gene protein_coding_gene FALSE TRUE AT4G14360.1|AT4G14360.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47791.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE90857.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.461868990421737 -6.34843715588714 0.000179497452470266 1 7.80655752400806 16.2351154735551 -0.461868990421737 0.0387407665756993
AT2G16500_at 9.45769369818505 9.6052831071622 9.30738793012007 9.60291828438213 9.31302486524593 9.07076629481861 10.4063136439356 10.6075906099232 10.4454739744429 10.4527287266551 10.0612058437955 10.3614867335579 10.0900575439262 10.0768352875575 9.675924822804 10.2129043537343 9.66261567395517 9.77461634803369 10.2915124819109 0.100783273638987 0.103201790661457 0.106168237271871 0.098618381047761 0.0983433408803265 0.105871052430428 0.098927378398788 0.105860264654492 0.112240076289058 0.0982933741300281 0.101404138389961 0.0982933741300281 0.101942899077448 0.107654373793929 0.106347948360062 0.100799380063662 0.103642670043740 0.0993544890637575 0.101025942995598 2 2 - 7157936 7158356 7158097.818 7157704 7160421 - gene protein_coding_gene FALSE TRUE AT2G16500.1 ADC1 (ARGININE DECARBOXYLASE 1) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Promoter region of ADC1 contains 742-bp AT-rich transposable element, called AtATE, that belongs to the MITE families of repetitive elements. Identical to Arginine decarboxylase 1 (EC 4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) (SPE1) [Arabidopsis Thaliana] (GB:Q9SI64;GB:Q38938); similar to ADC2 (ARGININE DECARBOXYLASE 2) [Arabidopsis thaliana] (TAIR:AT4G34710.2); similar to ar (GB:AAR08423.1); similar to Ar (GB:O82475); similar to ar (GB:AAR08422.1); contains InterPro domain Orn/DAP/Arg decarboxylase 2; (InterPro:IPR000183); contains InterPro domain Arginine decarboxylase; (InterPro:IPR002985) -0.551405911454464 -6.3462188977779 0.000179942489530453 1 7.80459278549093 19.8643860810167 -0.551405911454464 0.078986223795937
AT3G28690_at 7.81131041903292 8.29401385788136 8.33899461222775 8.33656172065784 8.90870184409397 8.56335861590733 7.82648441377848 7.95362168273938 6.56061693541465 6.93549271875601 7.12922008728247 7.1215220513778 7.50507319593332 7.44816481536805 7.06795432234556 7.72010352018875 7.6881580331438 7.44600105119102 6.59861107247511 0.166043542071436 0.161224080811429 0.165317472224860 0.179654223257066 0.165371080010408 0.175503172180906 0.169016905084146 0.161224080811429 0.173312945922813 0.168576938701506 0.162087604052695 0.170449837104015 0.161224080811429 0.165534391398719 0.166680341293486 0.161626042433902 0.173550673520293 0.164855702854813 0.169967341048174 3 3 + 10758085 10758670 10758399.364 10756276 10759105 + gene protein_coding_gene FALSE TRUE AT3G28690.1|AT3G28690.2 protein kinase, putative|kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G15080.1); similar to serine/threonine protein kinase-like [Solanum tuberosum] (GB:AAU89742.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.629040498626139 6.34361305815182 0.000180466832697290 1 7.80228378426845 15.2986383341994 0.629040498626139 0.105042093886104
AT2G40280_at 6.85157184222882 6.9966534343563 5.87683108890431 5.90700560726447 6.23342312137568 6.3234365271926 6.9908576164727 7.35919546495485 6.89579900721005 7.22557514975641 7.21691526316475 7.74161117326892 6.87334876303855 7.21612795911097 7.32323014202828 6.79903638276081 6.26636562825625 7.06128865485 7.34313474089555 0.194211542294018 0.195142430324804 0.201012156221415 0.204150603142882 0.200088014622793 0.198369117266022 0.197438851418267 0.191394733140853 0.205740508085462 0.190865743287061 0.196337643755222 0.194977738053338 0.197298815377699 0.200042738201421 0.202283979481258 0.192385765343903 0.219525245658291 0.194809113974277 0.196480177744023 2 2|0 -|/ 16832803 16833496 16833192.4 16832578 16835476 - gene protein_coding_gene FALSE TRUE AT2G40280.1 dehydration-responsive family protein similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G34300.2); similar to Os01g0828300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044685.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93959.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.528495653398213 -6.3430615721726 0.000180578016776437 1 7.80179498422162 13.6759102353923 -0.528495653398213 0.070451391866442
AT1G54830_at 7.27398580611302 7.02300069479642 7.72387567188118 7.60699440580577 7.56048389059666 7.49754716480555 6.97770080009955 7.27200218649342 6.68616501755305 6.57346678349125 7.14502782760283 7.08265692219682 7.06342946172123 6.86508723432944 6.9935896039733 7.03335874293953 7.55176540077423 6.89364885874718 6.18322068098198 0.181877998038044 0.185565357722752 0.185883609976565 0.184517826201591 0.185495017804386 0.184543671122469 0.188382865422622 0.187664885403451 0.201189452264177 0.189943966347046 0.192984072635044 0.193353208469797 0.18735086363834 0.191061957484287 0.186719730805924 0.181877998038044 0.199069083650141 0.196147337773569 0.188448489257153 1 1 + 20455471 20455963 20455769 20454750 20456338 + gene protein_coding_gene FALSE TRUE AT1G54830.1|AT1G54830.2|AT1G54830.3 CCAAT-box binding transcription factor Hap5a, putative Identical to Nuclear transcription factor Y subunit C-3 (AtNF-YC-3) (NFYC3) [Arabidopsis Thaliana] (GB:Q9ZVL3); similar to HAP5C (HEME ACTIVATED PROTEIN 5C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G08970.2); similar to At1g08970/F7G19_16 [Medicago truncatula] (GB:ABD32395.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.529086295295082 6.34042255786581 0.000181111105417244 1 7.7994552848522 14.1467094945128 0.529086295295082 0.0707683754922804
AT2G42790_at 9.39173985025526 9.4874368126283 9.80600078651127 9.95536678060125 10.1123597606360 9.78940222668493 8.96528501755582 8.84986384558085 7.8131959008113 8.37144221856437 8.06373311065962 7.65642676860023 8.82975344198118 8.48708257715946 7.94458308343564 8.24349763039868 9.0856421045648 8.64060557724066 8.03438788324755 0.140300661032538 0.139884004663448 0.138994126298579 0.141127990764252 0.147213685437287 0.138421576000653 0.142420697411284 0.140122438892623 0.159254821857159 0.142034171498482 0.141377522217269 0.144941769080335 0.140423841166784 0.145524647244904 0.140541944162923 0.138740314297754 0.136920874643870 0.141462375621686 0.142740820315273 2 0|2 /|- 17810210 17810947 17810537.8 17808552 17813126 - gene protein_coding_gene FALSE TRUE AT2G42790.1 CSY3 (CITRATE SYNTHASE 3); citrate (SI)-synthase Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. Identical to Citrate synthase 3, peroxisomal precursor (EC 2.3.3.1) (CSY3) [Arabidopsis Thaliana] (GB:Q9SJH7;GB:Q56YQ7); similar to CSY2 (CITRATE SYNTHASE 2), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58750.1); similar to CSY1 (CITRATE SYNTHASE 1), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G58740.1); similar to Os02g0232400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046373.1); similar to Citrate synthase, glyoxysomal precursor (GCS) (GB:P49299); similar to putative Citrate synthase, glyoxysomal precursor (GCS) [Oryza sativa (japonica cultivar-group)] (GB:BAD27711.1); contains InterPro domain Citrate synthase; (InterPro:IPR002020); contains InterPro domain Citrate synthase I; (InterPro:IPR010953) 0.519053938158635 6.3390557387109 0.000181387885733838 1 7.79824306338918 17.7656439872048 0.519053938158635 0.0668205547734364
AT2G19110_at 7.11772803830716 7.23176201331703 7.7414812468697 7.83143383967757 8.04791491442497 8.05066661633472 7.6291382972381 7.54848690791682 7.1434648138826 7.53072234172274 7.82852579487088 7.47349356293216 7.42415579455504 7.49969056218454 7.56588751041487 7.91469423577455 8.23102238716379 7.84681076573231 7.42281240544303 0.127352255089106 0.131056673672253 0.136199813701545 0.128584766883140 0.126758509799614 0.130319641764991 0.131387504920445 0.134356353535188 0.137213749672922 0.131263712258240 0.130836728272755 0.136880413707385 0.132155700209243 0.133816775745752 0.130183958966863 0.133565446549444 0.131013272798892 0.129277644623210 0.127149338906477 2 2 + 8292750 8293312 8293058 8285965 8293527 + gene protein_coding_gene FALSE TRUE AT2G19110.1 HMA4 (Heavy metal ATPase 4); cadmium-transporting ATPase Encodes a protein with similarity to Zn ATPase. Can rescue Zn deficiency in yeast and Cd resistance, suggesting a role in Zn and Cd transport. Identical to Putative cadmium/zinc-transporting ATPase 2 (EC 3.6.3.3) (EC 3.6.3.5) (HMA4) [Arabidopsis Thaliana] (GB:O64474); similar to HMA3 (Heavy metal ATPase 3), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT4G30120.1); similar to HMA2 (Heavy metal ATPase 2), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT4G30110.1); similar to Cadmium/zinc-transporting ATPase 4 (GB:Q9SZW5); similar to putative heavy metal transporting P-type ATPase [Thlaspi caerulescens] (GB:CAD98808.1); similar to P1B-type heavy metal transporting ATPase [Thlaspi caerulescens] (GB:AAS89468.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; (InterPro:IPR006404); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type copper-transporter; (InterPro:IPR001756) 0.446731948243015 6.33549870117952 0.000182110363126676 1 7.79508699119222 15.1941772827872 0.446731948243015 0.0287538720685559
AT3G27690_at 12.8486594165095 13.0286445865182 11.710679267838 11.7094940231943 12.2884856662553 12.3188027626033 13.5064561589649 13.5846998087991 13.9848559334236 13.9165405895950 14.4933534343701 14.5414198189970 14.1050389018278 14.2431816193728 14.3374941520839 14.2206418823356 13.7578840549128 14.1566993652449 13.8141936519551 0.0785469081194966 0.0766160047365046 0.0836386206905405 0.0805964074325564 0.0790721605971692 0.0809334742663979 0.0782210394613913 0.0783565191121528 0.077546928219586 0.0766160047365046 0.077265046425607 0.0766160047365046 0.0786524010365885 0.0797561369291974 0.0786684990225826 0.0766160047365046 0.078246963485009 0.0766160047365046 0.0766160047365046 3 3 + 10257609 10258110 10257895.636 10257184 10258248 + gene protein_coding_gene FALSE TRUE AT3G27690.1 LHCB2:4 (Photosystem II light harvesting complex gene 2.3); chlorophyll binding Encodes Lhcb2.4. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. similar to LHCB2.1 (Photosystem II light harvesting complex gene 2.1), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G05100.1); similar to light harvesting chlorophyll A/B binding protein [Prunus persica] (GB:AAC34983.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.45424106703664 -6.33539696364873 0.000182131073659718 1 7.79499669300435 26.6930706506525 -0.45424106703664 0.034366609011109
AT3G26520_at 12.3520218053647 12.4698309706228 12.5363451239267 12.7094392012782 13.0983451340679 12.9787044129781 12.6618767459379 12.7998210150430 12.8520720800267 12.6812936111516 13.6601801779474 13.4868410359579 13.6054242914591 13.3957256797177 13.6069055626829 13.5134988713298 13.1781439074021 13.5467511141595 12.8792917257838 0.0716345973585421 0.0703895270350683 0.0778890263377224 0.0717891932575307 0.0719357805389663 0.0784266551372994 0.0703895270350683 0.0720153315474742 0.0768135566184388 0.0736073435738722 0.0725222370229269 0.0703895270350683 0.0727448065962154 0.07237870851296 0.0713355630035531 0.0703895270350683 0.0775263749898717 0.0718150879959881 0.0762541197838102 3 3|0 -|/ 9724020 9724689 9724255.9 9723680 9725052 - gene protein_coding_gene FALSE TRUE AT3G26520.1 TIP2 (TONOPLAST INTRINSIC PROTEIN 2); water channel gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein. Identical to Aquaporin TIP1.2 (Tonoplast intrinsic protein 1.2) (Gamma-tonoplast intrinsic protein 2) (Gamma-TIP2) (Salt stress-induced tonoplast intrinsic protein) (TIP1.2) [Arabidopsis Thaliana] (GB:Q41963;GB:O23117;GB:O82446;GB:Q9LRV6); similar to GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma), water channel [Arabidopsis thaliana] (TAIR:AT2G36830.1); similar to tonoplast intrinsic protein [Brassica napus] (GB:AAD39372.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.47739276245765 6.3348619485854 0.000182240028302677 1 7.79452180838288 25.8524995356871 0.47739276245765 0.0480777757849494
AT3G55005_at 5.24824540100108 4.70444013801666 4.97851406308883 4.79848875741774 6.16398734711033 5.48648359797881 4.95746178089311 4.3990814423856 4.74734965079302 4.68823546444762 6.29938129675776 6.36862225227559 5.85129914310917 6.13307957184682 6.57517052420833 6.07261387382208 5.71609257588791 5.79152530975575 5.04737469354649 0.210403103937236 0.220146622325808 0.216290534867388 0.210865104150329 0.218125396130729 0.220907493754480 0.211896250252108 0.218666629720052 0.226407504303672 0.216977364486381 0.21454608956982 0.213739311269170 0.213519922036058 0.212115802055058 0.214204569849553 0.212177339076036 0.217726703133020 0.225687362688092 0.213450285694336 3 3|0 +|/ 20395597 20396966 20396502 20394933 20397355 + gene protein_coding_gene FALSE TRUE AT3G55005.1 TON1B (TONNEAU 1B) involved in cortical microtubule organization. mutants exhibit abnormal cell growth. can functionally complement TON1A. encodes a novel protein, similar to human sequence similar to FGFR1 oncogene partner, GB accession AAH11902. interacts with centrin in similar to TON1A (TONNEAU 1) [Arabidopsis thaliana] (TAIR:AT3G55000.1); similar to unknown [Solanum tuberosum] (GB:ABA81867.1); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.901440524843515 6.33445031918146 0.000182323904422016 1 7.79415641174795 10.5564009850133 0.901440524843515 0.181413230258909
AT1G07240_at 7.95535599735154 7.74858244427749 7.71585089302422 7.71180994106406 8.39767039915302 8.2102766008149 6.58344467123182 7.01035829911453 7.47021134946195 6.93369197190333 7.68827563823208 7.92046488197341 7.6090662945713 7.72080350302886 7.55196460614665 7.64608599996094 7.35636604076727 7.94926146485522 7.23063146366252 0.144653047649215 0.146334850208892 0.160281659121391 0.147755058164266 0.164326909716423 0.149042188140651 0.152023264264067 0.155890457094059 0.152483893467292 0.149543258602199 0.14944475477052 0.148506172066110 0.147244377073508 0.157878578825868 0.151250990978655 0.1458859386989 0.156283025269314 0.147166723394425 0.154357970465203 1 1 + 2224734 2225176 2224915.091 2223690 2225451 + gene protein_coding_gene FALSE TRUE AT1G07240.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G07250.1); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose (GB:2ACW); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.576620532101458 6.33362808351608 0.000182491575059689 1 7.79342644771616 15.1125674801046 0.576620532101458 0.0882652267614862
AT1G35720_at 10.5505376023557 10.5402307010751 10.3904434573413 10.2620426229879 10.6216140248051 10.3058308648532 10.6101250328266 10.4544535069327 8.47079164395577 9.66827512678051 10.2492084812156 10.6046503972613 10.339401204897 10.1902594834041 10.6828135395237 9.59869032799426 10.5323533089284 10.6316100463636 9.40725885590244 0.135806105480738 0.134029459630266 0.138774048713867 0.137687883416893 0.137959321917757 0.140499521465195 0.138317542512581 0.134192576681529 0.159329309632961 0.139512652439662 0.148337193584119 0.133452292886326 0.133452292886326 0.153181702045156 0.135224721354823 0.140519563098214 0.133541186053107 0.133823117139659 0.147727282968067 1 1 + 13227555 13228119 13227789.091 13226409 13228407 + gene protein_coding_gene FALSE TRUE AT1G35720.1 ANNAT1 (ANNEXIN ARABIDOPSIS 1); calcium ion binding / calcium-dependent phospholipid binding Encodes a member of the annexin gene family, a diverse, multigene family of calcium-dependent, membrane-binding proteins. The protein was determined to have peroxidase activity. This activity is thought to be dependent on the presence of post-translational modifications (most likely phosphorylation). The protein was shown to be present as a mixture of monomer and homodimer. The homodimerization seems to be dependent on the presence of Ca2+ or H2O2. The dimerization was prevented by the addition of DTT, β-mercaptoethanol and TCEP. Annat1 mRNA is expressed in flowers, roots,leaves and stems and is most abundant in stems. mRNA levels are increased in response to oxidative stress. Developmental expression patterns suggest a role in Golgi-mediated polysaccharide secretion. similar to ANNAT2 (ANNEXIN ARABIDOPSIS 2), calcium ion binding / calcium-dependent phospholipid binding [Arabidopsis thaliana] (TAIR:AT5G65020.1); similar to annexin-like protein (GB:AAC49472.1); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Annexin, type plant; (InterPro:IPR009118) 0.513830419092467 6.33309208851241 0.000182600966501557 1 7.79295054561239 20.2347756721029 0.513830419092467 0.0648771835984546
AT4G23730_at 7.87753010238404 7.93194223865968 8.3764098473204 8.47222274312856 8.83750873672702 8.47977990483039 8.92838918333617 8.67697385286226 7.86362876289316 7.65384844029255 9.07667893973778 8.88530242135026 9.16686294989822 8.87139522708575 8.09531108785247 8.52822561421838 8.8552690207856 8.08281701859265 7.84705690233469 0.176826795904996 0.162506045103237 0.171322552095619 0.181100411497949 0.173961843464110 0.179144015656982 0.165511093267115 0.164232072264049 0.176915528210279 0.160873832014575 0.168499204955976 0.165276613597035 0.17122738768375 0.179860593133911 0.161477714720676 0.171996470474434 0.171366026691423 0.171495115534603 0.161256827479769 4 4|0 +|/ 12363926 12364770 12364374.9 12362494 12365108 + gene protein_coding_gene FALSE TRUE AT4G23730.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G61610.1); similar to Aldose 1-epimerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72415.1); similar to Os01g0658700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043765.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.547413106728867 6.3302459227929 0.000183183048722335 1 7.79042272710905 16.6892999862129 0.547413106728867 0.0780321838177266
AT2G33150_at 11.4121278691914 11.4506642339925 12.2039391482110 12.1622945034570 12.1110579627379 11.6073822219433 11.2070324865565 10.8341593184218 10.1835090277905 10.5692343854451 10.6840983630581 10.4005198819274 11.2796970935961 10.8426323904112 10.5570287294493 11.0236429161200 11.194435967309 10.6357622603204 10.2744523734396 0.095591937043994 0.0940389653858969 0.0980992815488476 0.097535978897051 0.101499970573118 0.102460468547857 0.0988523040659336 0.0959613604951116 0.104267008440551 0.100952628087835 0.096730601438129 0.099641242697362 0.0972830437845577 0.0970951057295218 0.101320391693128 0.0934729889982607 0.108052666329939 0.110023915807675 0.102322888916606 2 2 - 14054902 14056145 14055610.364 14054555 14058217 - gene protein_coding_gene FALSE TRUE AT2G33150.1 PED1 (PEROXISOME DEFECTIVE 1); acetyl-CoA C-acyltransferase Encodes an organellar (peroxisome, glyoxysome) 3-ketoacyl-CoA thiolase, involved in fatty acid b-oxidation during germination and subsequent seedling growth. Mutants have defects in glyoxysomal fatty acid beta-oxidation. Identical to 3-ketoacyl-CoA thiolase 2, peroxisomal precursor (EC 2.3.1.16) (Beta- ketothiolase 2) (Acetyl-CoA acyltransferase 2) (Peroxisomal 3-oxoacyl- CoA thiolase 2) (Peroxisome defective protein 1) (PED1) [Arabidopsis Thaliana] (GB:Q56WD9;GB:Q93Z35;GB:Q9S7M3); similar to KAT5/PKT1/PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 1, PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2), acetyl-CoA C-acyltransferase [Arabidopsis thaliana] (TAIR:AT5G48880.3); similar to acetyl-CoA C-acyltransferase, putative / 3-ketoacyl-CoA thiolase, putative [Arabidopsis thaliana] (TAIR:AT1G04710.1); similar to 3-ketoacyl-CoA thiolase; acetyl-CoA acyltransferase [Cucumis sativus] (GB:CAA47926.1); similar to acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit (GB:S72532); similar to glyoxysomal beta-ketoacyl-thiolase [Brassica napus] (GB:CAA63598.1); contains InterPro domain Thiolase; (InterPro:IPR002155) 0.640000543381131 6.32911036671994 0.000183415854539287 1 7.78941383219414 22.2083951159801 0.640000543381131 0.108892916880261
AT4G16770_at 8.09012337969394 8.14059437742972 7.56397325294011 7.64637490635037 7.84720234398215 7.84548504134074 8.66503092303616 8.38896234555091 8.71827744899654 8.5724164943795 8.349719957524 8.12944837343366 7.88857379719828 8.75180025765395 8.38481340017066 8.34671306972515 7.71867808188575 8.33417612131663 8.52184490637547 0.149746281279702 0.154977794399229 0.163104788960622 0.166096610636380 0.147956746204544 0.162687506677507 0.151122752921836 0.152210262547583 0.168951154662770 0.148934077317233 0.146015839307069 0.152556633856195 0.146015839307069 0.148870273895323 0.147787320408872 0.150036521493794 0.180428548444025 0.150515004380250 0.155101227244687 4 4|0 -|/ 9434615 9435661 9435104.1 9434376 9437187 - gene protein_coding_gene FALSE TRUE AT4G16770.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G16765.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96197.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.480804052247336 -6.3141039605697 0.000186523083858769 1 7.77606236913713 16.4445533207642 -0.480804052247336 0.050617871696017
AT2G22425_at 8.93013594149128 9.29933576081322 9.38800448978478 9.43999684355482 9.46967708938924 9.14541749149152 8.24275276910565 8.4928218395629 8.96954564412938 8.5297137276265 9.55210262612812 9.5142456566491 9.24145222432027 9.41315251527546 9.37107736024308 9.2013005509087 8.79348084094865 8.89708268327177 8.5208001606711 0.137942465099494 0.129866131953582 0.136795226920901 0.137237880996569 0.13132075231706 0.138214315623379 0.138720014745894 0.136449441293235 0.143747942055482 0.135504817473669 0.136908103811788 0.130883831886260 0.130350003851625 0.132923011857280 0.135514325250918 0.130115015202859 0.137094604837061 0.139959878196672 0.136333241868885 2 2 + 9522182 9522366 9522281.818 9522016 9522615 + gene protein_coding_gene FALSE TRUE AT2G22425.1|AT2G22425.2 signal peptidase Identical to Probable signal peptidase complex subunit 1 (EC 3.4.-.-) (Microsomal signal peptidase 12 kDa subunit) (SPase 12 kDa subunit) [Arabidopsis Thaliana] (GB:Q944J0;GB:Q7G9Y5); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT4G40042.1); similar to Microsomal signal peptidase 12 kDa subunit family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98316.2); similar to Os12g0438900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066693.1); contains InterPro domain Microsomal signal peptidase 12 kDa subunit; (InterPro:IPR009542) 0.597073015277158 6.31042991999879 0.00018729260484534 1 7.77278815384514 18.0116877704961 0.597073015277158 0.0958370631981522
AT1G19680_at 7.99226593176657 7.92470886981965 7.06087281992994 7.20889536903128 8.33130559607355 8.15517657696393 7.00750034019453 7.27735887124358 7.81663863606377 7.32350428818479 6.1270568479701 6.44117278776412 6.80892208082575 6.44072210938356 6.29263279400343 6.56810358099531 6.83395175743154 6.36441168757806 7.76491685255971 0.198982849702947 0.197929248761269 0.190460275773039 0.189153622936552 0.196686434220324 0.202984943232247 0.188998156716109 0.193135783783562 0.210913517662091 0.188998156716109 0.199836979403852 0.195649719254002 0.195731998912735 0.199517098947908 0.209037121250351 0.190253905548727 0.194116209777657 0.197643575762026 0.188998156716109 1 1 + 6807020 6807477 6807242.8 6805448 6807851 + gene protein_coding_gene FALSE TRUE AT1G19680.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G75400.1); similar to Os01g0261100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042647.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE79651.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.505897066307588 -6.30555404338855 0.00018831923325623 1 7.7684396339141 14.6795813625512 -0.505897066307588 0.0624724195991343
AT3G28860_at 8.18479468929638 8.34395482578936 5.94746877619881 5.99386863065625 7.28988893885290 7.10077902769132 7.74318119614463 7.67472152611992 8.23446859479089 8.09557338820077 9.44928067653992 9.7096726872651 8.946281656617 8.9861867379305 8.98948273475225 8.51617315509922 7.56297067339648 9.24650526072518 9.05173100448425 0.179055555693762 0.174966218970646 0.184420861465296 0.200679340689971 0.179959233603450 0.177121639519553 0.174966218970646 0.179319935229101 0.180726388257493 0.182851415058975 0.182998931656342 0.181020131423614 0.174966218970646 0.186239600670419 0.186935103793589 0.174966218970646 0.196574435116951 0.174966218970646 0.176170873128871 3 3 - 10871555 10872077 10871809.455 10871275 10878743 - gene protein_coding_gene FALSE TRUE AT3G28860.1 ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19); ATPase, coupled to transmembrane movement of substances / auxin efflux transporter Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR11 and PGP19. Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Acts upstream of phyA in regulating hypocotyl elongation and gravitropic response. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AtPGP1. Identical to Multidrug resistance protein 11 (P-glycoprotein 19) (MDR11) [Arabidopsis Thaliana] (GB:Q9LJX0;GB:Q8GZ77;GB:Q8H6F5); similar to PGP10 (P-GLYCOPROTEIN 10), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G10680.1); similar to PGP2 (P-GLYCOPROTEIN 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT4G25960.1); similar to ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G36910.1); similar to H0423H10.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09461.2); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59581.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59582.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.469216757011174 -6.29996421166185 0.00018950379136371 1 7.76344980280861 15.9780372981517 -0.469216757011174 0.0451052898813577
AT2G43080_at 6.98457911126118 7.00779336729794 7.52011703809405 7.47774367496187 7.31573864067544 6.9053095267325 5.92092054193449 5.86988292178057 5.86071050896505 5.71624427616732 6.08506974748146 6.14283376265245 5.3960930530721 6.27856348756318 5.90170750980618 6.19420677642736 5.82037864811734 5.94907222671229 5.73916758345738 0.215314345823550 0.214645746834806 0.212429475206629 0.215323125279947 0.216205997874086 0.228014863999251 0.210605286619130 0.22059075511582 0.235190239349822 0.224284214491603 0.212569016242801 0.214406332472270 0.214173461247412 0.225339539579826 0.217351416184283 0.210419141133177 0.216322951270705 0.211855605136849 0.212288587542735 2 2|0 +|/ 17923973 17925568 17924840.75 17922638 17925831 + gene protein_coding_gene FALSE TRUE AT2G43080.1 AT-P4H-1 (A. THALIANA P4H ISOFORM 1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors / procollagen-proline 4-dioxygen Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and other proline rich peptides. similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G20270.1); similar to Os04g0346000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052511.1); similar to OSIGBa0111I14.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66506.1); similar to putative prolyl 4-hydroxylase [Oryza sativa (japonica cultivar-group)] (GB:BAD23054.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.528941548248274 6.29906128825856 0.000189695898507360 1 7.76264333857608 12.7467763233467 0.528941548248274 0.0720604482224247
AT4G00400_at 6.88112228489191 7.51085224827282 3.76243042636265 4.33321461988948 6.42437896499968 6.13359345608444 7.9589374543354 8.51326174121422 7.79690256371797 7.0401822664813 8.20426378074346 8.81724646436028 8.73529655323583 8.21280440334276 8.4941789684976 7.84834580792161 6.37579026045382 8.2792754289877 7.27428403611057 0.177426162950024 0.178694418234952 0.188551714753449 0.186580484553364 0.180847991721642 0.182871782351944 0.183574458531347 0.187641962271536 0.182493877269699 0.186937601034885 0.173228689574596 0.173620888465410 0.177139358903615 0.175984994792790 0.177728133772766 0.176080582959612 0.201823036805482 0.174595648280864 0.181205625418856 4 4 - 174377 176591 175487.5 174070 176853 - gene protein_coding_gene FALSE TRUE AT4G00400.1 phospholipid/glycerol acyltransferase family protein Identical to Probable glycerol-3-phosphate acyltransferase 8 (EC 2.3.1.15) (GPAT8) [Arabidopsis Thaliana] (GB:Q5XF03;GB:O23061;GB:O23062); similar to ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT2G38110.1); similar to ATGPAT4/GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT1G01610.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE91390.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.901097572835795 -6.29830292410094 0.000189857414170401 1 7.76196589173444 14.1854021481127 -0.901097572835795 0.182667870639427
AT1G18540_at 10.1275033675887 10.1645107185275 9.74593512345928 9.76268695565089 9.5227398918934 9.39090883088928 10.3162006307977 10.4536735481047 9.76019070760444 9.73659621529304 9.42619027047131 9.86118968319921 9.13483926710683 9.27878272836516 9.98546855588168 9.13675186279732 9.3767341348126 9.25467501542113 9.52206556530513 0.107104787500476 0.103956287655108 0.104180989382740 0.102823366585098 0.101352842444686 0.103220610512793 0.105616976480090 0.104215148961241 0.112247654227561 0.101352842444686 0.106684064968995 0.105280975072885 0.102441119892653 0.104594084648378 0.105999231121672 0.105884878117217 0.103829155402079 0.102584867825794 0.107282191521390 1 1|0 -|/ 6377480 6378373 6377940.8 6377314 6378573 - gene protein_coding_gene FALSE TRUE AT1G18540.1 60S ribosomal protein L6 (RPL6A) Identical to 60S ribosomal protein L6-1 (RPL6A) [Arabidopsis Thaliana] (GB:Q9FZ76); similar to 60S ribosomal protein L6 (RPL6C) [Arabidopsis thaliana] (TAIR:AT1G74050.1); similar to 60S ribosomal protein L6 (YL16-like) (GB:P34091); contains InterPro domain Ribosomal protein L6, N-terminal; (InterPro:IPR005568); contains InterPro domain Ribosomal protein L6E; (InterPro:IPR000915) -0.450513127712701 -6.29659553091418 0.000190221605751737 1 7.76044034750235 19.4879097679428 -0.450513127712701 0.033702767673192
AT1G23400_at 8.923048746532 9.00639947285667 8.38377251927088 8.68412706799542 9.04407147880523 8.5487349757858 9.44359895194566 9.5013334560641 9.86534639117285 9.72680014648822 9.10734772189596 9.26582054707657 9.12514980112493 9.27376079698477 9.0456840715607 9.24944726748399 8.53285414676776 9.17472143356571 9.72126546454163 0.128753632038254 0.122323133599669 0.146674837558967 0.127111442047023 0.126581168503279 0.136956356632161 0.129528745291733 0.124317628836514 0.126549967223562 0.122323133599669 0.131910242618035 0.128045784378423 0.123241994138236 0.129584775568757 0.127286730665813 0.122323133599669 0.148331248003838 0.126552951227618 0.122323133599669 1 1|0 -|/ 8312225 8313191 8312577.7 8312065 8314733 - gene protein_coding_gene FALSE TRUE AT1G23400.1 ATCAF2/CAF2 (ARABIDOPSIS THALIANA HOMOLOG OF MAIZE CAF2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20020.1); similar to CRS2-associated factor 2 [Zea mays] (GB:AAP22136.1); similar to Os01g0323300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042896.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.613853878572646 -6.29440699462015 0.000190689548010736 1 7.7584842375182 18.3758786123445 -0.613853878572646 0.101771993056404
AT1G14790_at 5.54984009082618 5.6305548019962 5.6567922784407 5.59767623271552 5.3791770337296 5.23678026643961 4.07524796599865 3.35088227930501 5.27104042230486 4.30529861426248 5.89743331809227 5.61335788359799 5.57525355389712 5.59570014666205 5.02038005233962 5.88863289364945 5.41948660706756 5.02703091728783 5.1673598759635 0.227434969303850 0.221317396341156 0.230566623644421 0.227610021572236 0.226673963643688 0.239472866729498 0.233512798843990 0.240285296785708 0.22746221996636 0.223534349069063 0.227727853050344 0.227249065595941 0.226475822609034 0.240587469991624 0.228115785227354 0.229480971408789 0.223842394654175 0.227722195708515 0.232163768909330 1 1 - 5094312 5094819 5094481.364 5093956 5098027 - gene protein_coding_gene FALSE TRUE AT1G14790.1 RDR1 (RNA-DEPENDENT RNA POLYMERASE 1); RNA-directed RNA polymerase/ nucleic acid binding Encodes RNA-dependent RNA polymerase. While not required for virus-induced post-transcriptional gene silencing (PTGS), it can promote turnover of viral RNAs in infected plants. Nomenclature according to Xie, et al. (2004). similar to RDR2 (RNA-DEPENDENT RNA POLYMERASE 2), RNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G11130.1); similar to RNA-directed RNA polymerase-like [Solanum tuberosum] (GB:AAU89756.1); similar to RNA-directed RNA polymerase [Solanum lycopersicum] (GB:CAA71421.1); similar to RNA-directed RNA polymerase [Nicotiana tabacum] (GB:CAA09697.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA dependent RNA polymerase; (InterPro:IPR007855) 0.703034142848569 6.28972126164622 0.000191695682025832 1 7.75429361409761 10.2692317315570 0.703034142848569 0.128921898563658
AT3G22220_at 5.17225606542985 5.35895453131757 5.95029288138134 5.84091835758615 6.59355176308617 6.37217895299603 5.15965925208487 5.5009700571991 5.24807369348865 5.21741401193558 5.7177717293187 5.7745890878897 5.67395465404207 5.29130410432225 5.54051021564736 5.41357976628523 5.51473260409849 5.4769244709096 5.56966522558072 0.232650426567364 0.229422024658148 0.240564229872834 0.227831981176717 0.233458910254173 0.235011864167454 0.226321665527278 0.226316658186112 0.242070036391960 0.230489570330349 0.232098666821315 0.226752555440981 0.232651159835432 0.234187466861567 0.226316658186112 0.228501316122173 0.233167033281346 0.238619455913013 0.238350003980552 3 3|0 -|/ 7840123 7840654 7840347.25 7839562 7842881 - gene protein_coding_gene FALSE TRUE AT3G22220.1|AT3G22220.2 hAT dimerisation domain-containing protein|DNA binding / protein dimerization similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15020.1); similar to Os03g0822900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051738.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18451.1); contains InterPro domain Protein of unknown function DUF1544; (InterPro:IPR011523); contains InterPro domain HAT dimerisation; (InterPro:IPR008906); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Viral capsid/hemagglutinin protein; (InterPro:IPR008980); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) 0.54832268215855 6.28704932530568 0.000192272014768589 1 7.75190246231859 11.1913336356680 0.54832268215855 0.0797401058237489
AT1G58290_at 10.6926049944105 10.6902876005845 10.4576172803176 10.3176867880652 10.1480762661716 9.93016659321584 12.0297636262386 11.7509817583899 11.2988980443775 11.4178291724744 11.6974470854639 11.8053255686022 11.0107365725406 11.2338481411005 11.5128470988344 10.9035275509480 10.8465797407255 11.7211291393934 11.1495244295958 0.081403393340468 0.081403393340468 0.0859533719888691 0.0832464387244852 0.0849465445136897 0.082763067376697 0.0840212835695835 0.0889275435543825 0.0905074335480268 0.0826043455227649 0.0829397189136926 0.0818256349712754 0.0858052786002064 0.0845174454941914 0.0825342275200049 0.081403393340468 0.0828468633351125 0.0851841926478663 0.0815812516505941 1 1 - 21627770 21628252 21628034.273 21627391 21629865 - gene protein_coding_gene FALSE TRUE AT1G58290.1 HEMA1; glutamyl-tRNA reductase Encodes a protein with glutamyl-tRNA reductase (GluTR) activity, catalyzing the NADPH-dependent reduction of Glu-tRNA(Glu) to glutamate 1-semialdehyde (GSA) with the release of free tRNA(Glu). It is involved in the early steps of chlorophyll biosynthesis. Identical to Glutamyl-tRNA reductase 1, chloroplast precursor (EC 1.2.1.70) (GluTR) (HEMA1) [Arabidopsis Thaliana] (GB:P42804;GB:Q9LQB9); similar to HEMA3, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT2G31250.1); similar to HEMA2, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT1G09940.1); similar to Glutamyl-tRNA reductase 1, chloroplast precursor (GluTR) (GB:P93111); similar to Glutamyl-tRNA reductase 2, chloroplast precursor (GluTR) (GB:P49294); similar to glutamyl-tRNA reductase (GB:AAA19118.1); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Glutamyl-tRNA reductase; (InterPro:IPR000343) -0.512421599789077 -6.28688850697542 0.000192306763658059 1 7.75175850811342 22.0672384439327 -0.512421599789077 0.06584948680569
AFFX-Athal-GAPDH_M_s_at 11.1868366452109 11.3137390800016 11.6203941232696 11.5375646843809 11.3639636410394 11.0323726482333 11.5285456961103 11.4940273586218 10.2359181170888 10.5925545061171 11.4169055442793 11.5992560922959 11.4218506023241 11.1978672827865 11.5845555298418 11.2460328304920 11.3625027776072 11.0919306248590 10.2528973708697 0.0882863515928526 0.0877467273179353 0.088017814428582 0.0874065428166174 0.0873726843526274 0.0928229580216132 0.0864024018630597 0.085953285185882 0.099490937867141 0.0885717086332449 0.0879026640312355 0.0867090536671713 0.0864605508613274 0.094063720265521 0.0885469162789523 0.085953285185882 0.092162809793934 0.0916860262819142 0.0939049150540156 NA NA NA NA NA FALSE FALSE 0.506221287556761 6.28327305557089 0.000193089795607274 1 7.74852111822429 22.2474651472348 0.506221287556761 0.0633741787711529
AT2G34250_at 10.083313385964 10.2583971904474 10.4094092520740 10.3635070838854 10.0811336901393 9.89321207815482 9.46811693847618 9.36995557262525 8.7737360926005 8.77509642720725 9.25008053980926 9.74475970163896 9.13676874456027 9.34741071495454 9.526947848617 9.56360264061363 9.05120826917898 9.02788593704464 8.7778456429591 0.140062705523061 0.135899443079305 0.135265898917941 0.135811329336853 0.136727575801622 0.137704969070563 0.142408892913838 0.146967142244368 0.156249621064769 0.146079266126723 0.139584106406716 0.134350842546868 0.143284739857882 0.144405923439094 0.148073773498344 0.134350842546868 0.139188585655096 0.146538612005828 0.147943469257527 2 2|0 +|/ 14470795 14471620 14471322.125 14469138 14471947 + gene protein_coding_gene FALSE TRUE AT2G34250.1|AT2G34250.2 protein transport protein sec61, putative|protein translocase similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G29310.1); similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G78720.1); similar to putative integral membrane protein [Phaseolus vulgaris] (GB:AAF18411.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE84066.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE85367.1); contains InterPro domain SecY protein; (InterPro:IPR002208) 0.473696708074195 6.28164949080553 0.000193442563828434 1 7.74706665953278 19.0442018675413 0.473696708074195 0.0482420825969462
AT3G15590_at 7.95269946746611 7.9040836920344 7.84972006525603 8.11051419816571 7.76543091037131 7.96207870094126 8.2843001409222 8.24305143513911 6.74500648285963 7.21013210185483 5.76322545214133 6.23529986119632 6.53268993728948 6.23304089152518 5.90934530376889 7.13392476639859 7.2264813965717 6.31619179261681 7.73501040626618 0.201717068385832 0.200943261946205 0.201389463548934 0.197965227407025 0.201631141943511 0.200452603698490 0.199671875189106 0.200914161723948 0.209478398541370 0.206542098654298 0.204620459495384 0.199337322756932 0.20712587924889 0.2064974986672 0.197965227407025 0.198641294012845 0.210974410892849 0.209204109094976 0.19846124117269 3 3 - 5275581 5276040 5275769.545 5275408 5277998 - gene protein_coding_gene FALSE TRUE AT3G15590.1 DNA-binding protein, putative similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G80270.3); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93021.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.492686226839278 -6.27852851070255 0.000194122678486600 1 7.74426959004423 14.8333971207114 -0.492686226839278 0.0575907831896898
AT3G47910_at 5.0672315048705 5.20176144765164 5.83479505227981 5.63692742533062 5.37437365508918 5.71374826590879 5.67457992318678 5.85637618622178 3.57914531819253 2.97482424577987 3.72142583913172 3.75416179918114 3.92145796954107 4.27546497795613 4.3736211028768 4.32800517481872 5.2702032415595 4.16019147456426 3.42862343189731 0.280537325976998 0.259091419403540 0.260710735664199 0.259091419403540 0.284412801067768 0.260982725184119 0.274067913534314 0.259822312710652 0.272902338091169 0.298349869528730 0.273568459231158 0.269698232857348 0.268634761337009 0.259091419403540 0.261427738520778 0.259091419403540 0.271813392113568 0.259215058621664 0.272542387539771 3 3 - 17688236 17688597 17688353.333 17685367 17692715 - gene protein_coding_gene FALSE TRUE AT3G47910.1 binding / nucleic acid binding / ubiquitin thiolesterase/ zinc ion binding similar to ubiquitin carboxyl-terminal hydrolase-related [Arabidopsis thaliana] (TAIR:AT3G47890.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94151.1); contains InterPro domain Protein of unknown function DUF627; (InterPro:IPR006866); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Protein of unknown function DUF629; (InterPro:IPR006865) 0.544004641499924 6.27794544573802 0.000194250028896732 1 7.74374686887445 9.32152290560584 0.544004641499924 0.0784445378109084
AT3G06590_at 6.90284940999238 6.96106856983205 6.84130495323066 6.79259561116465 7.65161545789446 7.52843892334498 7.48136300544654 7.24089899911556 6.52653505045582 6.93634172661335 7.6585251027278 7.57366291172355 7.57390269309098 7.42848224627802 7.57377326786606 7.82811466931636 7.82360190592184 7.59132895451384 6.76043822602392 0.157322393192613 0.157335685260758 0.159376472743639 0.152422849142164 0.150608570406795 0.158743210557652 0.157567164186898 0.162912558869143 0.173168335710752 0.153898648234882 0.154472349761122 0.151845043318613 0.153410254072777 0.161487966470436 0.159259798305940 0.153704488353707 0.162842117808724 0.158513279997823 0.161766898581887 3 3 - 2054683 2055176 2054976.636 2052699 2055420 - gene protein_coding_gene FALSE TRUE AT3G06590.1|AT3G06590.2 transcription factor| similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G17100.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE82804.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.473631354105417 6.27256103110845 0.000195430409916442 1 7.7389171859013 14.3612813512331 0.473631354105417 0.0485656470769482
AT4G39510_at 4.63056922010317 5.0237392917211 4.3765917177515 4.62386312285714 4.57815928405664 4.71614883006341 7.95313414693429 8.20582422918868 5.58409567264383 7.47144818878827 7.363477512277 8.61088454800267 7.39835360347021 7.28804894521429 7.84537202694018 7.7416350354044 6.50340625095932 6.53285614261617 7.07144646000857 0.204322836055449 0.201688515355081 0.208501420446762 0.209770898573792 0.209228308148945 0.203501175682929 0.200711950299229 0.200711950299229 0.202193196638336 0.212073512153285 0.200711950299229 0.204199880823953 0.201537268850435 0.207770288386020 0.200711950299229 0.202203540338582 0.215587178545558 0.203598325873781 0.204201881161524 4 4 - 18368958 18369505 18369197.455 18368797 18370646 - gene protein_coding_gene FALSE TRUE AT4G39510.1 CYP96A12 (cytochrome P450, family 96, subfamily A, polypeptide 12); oxygen binding member of CYP96A similar to CYP96A13 (cytochrome P450, family 96, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G02900.1); similar to CYP96A2 (cytochrome P450, family 96, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G32170.1); similar to CYP96A11 (cytochrome P450, family 96, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39500.1); similar to Os03g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048917.1); similar to Cytochrome P450 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93892.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.589059249503829 -6.26615005233997 0.000196846110446739 1 7.73316075817043 12.5732542462965 -0.589059249503829 0.0945675646221985
AT4G16880_at 7.57135648015772 7.95717538224367 8.49478499562369 8.6723112000273 9.4070576079794 8.74810069869646 8.62128550689801 8.60439138403197 7.89928715548496 7.73784369035663 8.68939368947306 8.6396747774691 8.65382233674621 8.7275423826899 7.90701702520391 8.90718538042501 8.16752049288607 8.6426221982705 7.57081835350081 0.188244632533035 0.180508523600439 0.185025389107795 0.171211797872521 0.171211797872521 0.180682256040589 0.171211797872521 0.171211797872521 0.206635094316482 0.189226034746491 0.185185819053716 0.172218465908957 0.180045030707941 0.172857205110134 0.181475244289769 0.172556059330077 0.195526073198375 0.186722446238943 0.182366295589005 4 4 - 9496690 9498798 9497138.375 9496206 9498945 - gene protein_coding_gene FALSE TRUE AT4G16880.1 disease resistance protein-related similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16940.1); similar to TIR [Medicago truncatula] (GB:ABE91518.1); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) 0.72393782809844 6.26608172347718 0.000196861259597438 1 7.73309937076574 16.6484730828787 0.72393782809844 0.135699730549685
AT2G04410_at 9.80401205483508 9.88279962860222 10.2145111994363 10.1644088186055 10.4353959826736 10.0797206088283 9.7140098682069 9.67404312099704 9.13430509726964 9.4947856037098 10.0346365066997 9.72457470254969 9.79501923338425 9.9108731993957 9.79309530013296 9.90690919984285 10.0273340149636 9.75635645386449 9.30487169116364 0.125039790618192 0.122957096792222 0.123916878509223 0.127351205821925 0.128295277736991 0.129576279987023 0.123355822993185 0.125086291656932 0.137166331582040 0.129248725011122 0.131598706598335 0.124995678000541 0.126206130665258 0.134678525660259 0.124325983143512 0.124977624782847 0.122285472151486 0.124331864078129 0.133126884026065 2 2|0 -|/ 1533967 1535067 1534244.667 1533694 1535115 - gene protein_coding_gene FALSE TRUE AT2G04410.1 similar to NOI [Arabidopsis thaliana] (TAIR:AT5G55850.1); similar to nitrate-induced NOI protein [Zea mays] (GB:AAB86937.1); contains InterPro domain Nitrate-induced NOI; (InterPro:IPR008700) 0.506036006599365 6.26234953997922 0.000197690665973207 1 7.72974521997423 19.5860729721407 0.506036006599365 0.064011524272833
AT1G63680_at 6.22021592613971 6.76956736652604 5.72149961904988 5.94529606393999 6.29621334752849 6.26422274653895 7.27046249626538 7.15997347824979 5.84011265868287 6.68093510541208 5.90778839176208 5.94176717662123 5.62640817341524 5.35130034049337 6.31686235846841 6.60760595524057 5.66320576939301 5.59775433647748 6.42930376168955 0.209463496512233 0.205928056712733 0.203783653662849 0.217276681114659 0.209803176978596 0.217924271421293 0.214433830552994 0.213384320363468 0.213991809157349 0.211124345227936 0.218119574927859 0.209040369172228 0.209609528115237 0.213169905993987 0.222521407422660 0.212091121448299 0.217580914033916 0.209210084404040 0.211056679149647 1 1 + 23619836 23620736 23620293.727 23618100 23620764 + gene protein_coding_gene FALSE TRUE AT1G63680.1 PDE316 (PIGMENT DEFECTIVE EMBRYO); ATP binding / ligase mutant has Pale seeds and seedlings; Similar to Bacterial mur E Protein similar to Os10g0548900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065308.1); similar to MurE synthetase [Physcomitrella patens subsp. patens] (GB:BAE45858.1); contains InterPro domain Cytoplasmic peptidoglycan synthetase, N-terminal; (InterPro:IPR000713); contains InterPro domain Cytoplasmic peptidoglycan synthetases, C-terminal; (InterPro:IPR004101); contains InterPro domain UDP-N-acetylmuramyl-tripeptide synthetase; (InterPro:IPR005761); contains InterPro domain Nuclear receptor coactivator, interlocking; (InterPro:IPR009110); contains InterPro domain Mur ligase, middle region; (InterPro:IPR013221) -0.619222075862572 -6.25973971341065 0.000198272927569428 1 7.72739844003147 12.5526165828608 -0.619222075862572 0.104566134472072
AT2G43160_at 7.14285466722371 6.99412377409903 7.32271613115098 7.42691034061353 6.99292416597228 7.51832592762781 6.31809950126079 6.52745085937221 6.53708780174101 5.97596229131454 6.70724128878284 6.74088032489801 7.07184734648267 7.0491474599443 7.00360813434013 6.73529719946377 6.81993704761875 6.44121516665464 5.98170300977312 0.146720152961455 0.147524414568930 0.151176556278457 0.149825093380804 0.158343309218707 0.150162820384600 0.152656216402759 0.151864301138833 0.154404588064195 0.150862674432197 0.148085445156676 0.152632801649458 0.145027048295277 0.146188651455158 0.144584607477187 0.146273576855862 0.147289699030883 0.150470204909395 0.146087261350742 2 0|2 /|+ 17956938 17960307 17958967.611 17955139 17960746 + gene protein_coding_gene FALSE TRUE AT2G43160.1|AT2G43160.2|AT2G43160.3|AT2G43160.4 epsin N-terminal homology (ENTH) domain-containing protein|binding similar to (EPSIN3), binding [Arabidopsis thaliana] (TAIR:AT3G59290.1); similar to Putative epsin [Oryza sativa] (GB:AAK98696.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.612907992966229 6.25197747886644 0.000200015858383107 1 7.72041222712888 13.5234578943981 0.612907992966229 0.102796846740431
AT3G54620_at 6.95917523535625 7.08979204349876 7.44237816280991 7.20522027314968 7.9507129466567 7.30579290683577 6.36441152281246 6.3567719403778 6.58423740141849 5.38042551947739 6.71190791063454 6.10710307621674 6.47771097541059 6.30266120169792 6.29995182318795 6.64303762749647 6.87508565192989 6.62346336290746 5.86884249850343 0.183580530871541 0.17540584155641 0.179079041307928 0.189023481782269 0.177867890167548 0.193805422462635 0.188465288402941 0.174748334013044 0.184218344019074 0.183363574127759 0.181463071824725 0.174883470252954 0.174748334013044 0.204666927400076 0.182599600812965 0.174748334013044 0.182998124877624 0.179195081840368 0.177889255639798 3 3|0 -|/ 20229728 20231099 20230580.556 20228875 20231388 - gene protein_coding_gene FALSE TRUE AT3G54620.1 BZO2H4 (basic leucine zipper O2 homolog 4); transcription factor bZIP transcription factor-like protein mRNA similar to BZO2H1 (basic leucine zipper O2 homolog 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G02640.2); similar to bZIP transcription factor bZIP89 [Glycine max] (GB:ABI34655.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.672050892035229 6.25155728309496 0.000200110687477433 1 7.72003376909027 13.3090903840130 0.672050892035229 0.121049830649108
AT2G37190_at 9.19440395739234 9.30656202158003 7.91472833412174 8.2775816046159 8.7838338100869 8.5674013479372 8.95035335461245 9.14761609559793 8.71283333931929 8.46019772331123 8.3452918316542 8.65287737365964 8.10686689736114 8.24808309752416 9.07457998274137 7.83492775984643 8.11479791576834 8.42434601227973 8.91035487200218 0.152100827771277 0.160534079737077 0.155707241759479 0.151359073386448 0.150825440661611 0.143963921361589 0.154261260621849 0.156315729354495 0.143963921361589 0.154689457635805 0.14778177454608 0.145016508712412 0.147838812484333 0.145778607551458 0.144045899814015 0.157401769221006 0.155306588077019 0.152488043187432 0.146535762966238 2 2 - 15626705 15627100 15626939.818 15626486 15627198 - gene protein_coding_gene FALSE TRUE AT2G37190.1 60S ribosomal protein L12 (RPL12A) Identical to 60S ribosomal protein L12-1 (RPL12A) [Arabidopsis Thaliana] (GB:P50883;GB:Q9ZQD3); similar to 60S ribosomal protein L12 (RPL12B) [Arabidopsis thaliana] (TAIR:AT3G53430.1); similar to 60S ribosomal protein L12 [Capsicum annuum] (GB:AAR83868.1); similar to Os02g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047832.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) -0.554044101230886 -6.24990516176361 0.000200484014003560 1 7.71854548183181 17.2901517342757 -0.554044101230886 0.0829936549975784
AT3G05180_at 5.69473382621972 5.68497079631008 5.01115752347441 4.7363632213241 4.83225024902195 5.07873487531993 6.35786462170825 6.38962350988251 3.21666465047229 4.92564843529458 4.15808826342158 5.14691623724179 4.68702849406973 4.17782996865698 5.24580252531871 4.27406084699722 4.31804947837314 4.05012582399576 5.05912176111675 0.238217063771596 0.233918588493559 0.230091756954730 0.234911216160670 0.234789771136949 0.234650985554602 0.239081027686073 0.236787337528403 0.236943555420361 0.238360071660250 0.233497353015722 0.235779975502145 0.230091756954730 0.242065217395699 0.236286761906885 0.240149619515803 0.252365388319378 0.230593184021927 0.233454885518154 3 3 - 1468631 1469504 1469018 1468404 1470557 - gene protein_coding_gene FALSE TRUE AT3G05180.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G54790.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABD32376.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.505206149390113 -6.24832452110893 0.000200841903484719 1 7.71712118390057 9.92707032143457 -0.505206149390113 0.0641401666824079
AT3G27300_at 7.73005626873503 7.78256171695047 7.49402962715441 7.80074713289226 8.58718412611813 7.3578377375153 6.89186126779188 6.34048496512713 5.5596944351274 6.57292715198569 7.31744661544048 7.75646678986311 7.2398870554622 7.89827511462991 7.8099246883464 7.52865204737475 7.92630192162913 7.29311558474759 5.83836783584832 0.224059911126328 0.219097295572306 0.224650569676424 0.216998138817880 0.219896505877728 0.222535741753446 0.212974332056198 0.221130429560459 0.242793252904695 0.224893394497102 0.214839218878404 0.214867457898649 0.222985752235120 0.219891284508965 0.223177626850369 0.212974332056198 0.216139202058383 0.214580463013047 0.221713483513057 3 3|0 -|/ 10084557 10085650 10085085.4 10084286 10087933 - gene protein_coding_gene FALSE TRUE AT3G27300.1|AT3G27300.2|AT3G27300.3 G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5); glucose-6-phosphate 1-dehydrogenase|G6PD5 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 5) Identical to Glucose-6-phosphate 1-dehydrogenase, cytoplasmic isoform 1 (EC 1.1.1.49) (G6PD5) (G6PDH5) (ACG9) [Arabidopsis Thaliana] (GB:Q9LK23;GB:Q8VZD0;GB:Q9SUK0); similar to G6PD6 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 6), glucose-6-phosphate 1-dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G40760.1); similar to Glucose-6-phosphate dehydrogenase [Medicago truncatula] (GB:ABE83959.1); similar to glucose-6-phosphate 1-dehydrogenase cytoplasmic isoform-like [Solanum tuberosum] (GB:ABB55386.1); similar to glucose-6-phosphate dehydrogenase [Populus suaveolens] (GB:AAR26303.3); contains InterPro domain Glucose-6-phosphate dehydrogenase; (InterPro:IPR001282) 1.11481876040090 6.24672612548214 0.000201204525906946 1 7.7156804864039 14.2913896227058 1.11481876040090 0.239300300781541
AT3G57190_at 6.39095325494008 6.27856032708606 6.73753671595698 6.80086117692656 6.95757455246266 6.42001803271026 7.88496459651836 7.77101117619535 6.06766385647158 7.41978857325322 5.39605976028725 5.85628451364728 6.20771425361919 5.80976449955413 5.6637305171596 7.23848321223753 6.57948399036047 6.18221026927052 7.38161937229622 0.199150893227577 0.192069616444838 0.199689261444024 0.193823342110967 0.192069616444838 0.197875814119465 0.202717337763347 0.211375035526242 0.219688536715100 0.198835640261871 0.203267049918249 0.197266712660566 0.193594854488661 0.197136498570539 0.200414688521850 0.194896585839430 0.204161089230853 0.192069616444838 0.194497597184853 3 3 + 21178434 21179116 21178702.909 21177382 21179355 + gene protein_coding_gene FALSE TRUE AT3G57190.1 peptide chain release factor, putative similar to HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109), translation release factor [Arabidopsis thaliana] (TAIR:AT5G36170.1); similar to Class I peptide chain release factor; PCRF [Medicago truncatula] (GB:ABE90269.1); contains InterPro domain PCRF; (InterPro:IPR005139) -0.596007804747096 -6.24027767901806 0.000202674773282450 1 7.70986415099168 13.4417218012782 -0.596007804747096 0.097679286849282
AT3G50270_at 8.59210121812324 8.91704612021688 7.7271398577215 7.50395853189582 8.55104641157826 8.4918557969545 9.11606789391066 8.94410865538605 9.00979868786954 8.77950584863803 8.67093747017832 8.97805649249961 8.5476570273388 8.51993682481106 8.86647643247479 8.80447712747894 8.41640435455898 8.36031672001549 8.86570181449426 0.166059701747262 0.158364303745550 0.167230576457276 0.161549849790543 0.167817152134475 0.168526947778172 0.166738234610367 0.16487301937105 0.168440385618665 0.167443243111418 0.166635257234240 0.162736601447748 0.164966141475954 0.169045098629227 0.168113002881532 0.161036425153434 0.169708694577817 0.170619274983031 0.166427113081387 3 3 + 18647672 18648133 18647907.273 18646902 18648323 + gene protein_coding_gene FALSE TRUE AT3G50270.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G50280.1); similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase [Malus x domestica] (GB:AAV50009.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.531650066601398 -6.23690486466773 0.000203448466814927 1 7.70681934263119 17.2456830223084 -0.531650066601398 0.0751289676733329
AT1G20510_at 8.55849549120262 9.28164607995577 8.84535283809912 9.15634425272568 8.63714241067037 8.48399563832421 7.51649726444325 6.80939718208855 6.29608446284675 6.71074762934061 7.43020486650627 7.85651861979644 7.06056366216968 7.50586918121577 7.24427825924313 7.75059951260631 7.76226638393712 7.79374102825096 6.46025575662151 0.245235305212068 0.251917520018551 0.248577528682357 0.252573129725176 0.237951694750469 0.243643847747713 0.234821073770864 0.241614298872549 0.250786169430862 0.246544766671588 0.239226050326696 0.234821073770864 0.236887476091724 0.234821073770864 0.243855997086030 0.235451370124791 0.249784165711828 0.235589418553224 0.248087925486763 1 1|0 -|/ 7103640 7104750 7104206 7103445 7105871 - gene protein_coding_gene FALSE TRUE AT1G20510.1|AT1G20510.2 OPCL1 (OPC-8:0 COA LIGASE1); 4-coumarate-CoA ligase similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20480.1); similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT5G38120.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22700.1); similar to Os03g0132000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048867.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873); contains InterPro domain Src homology-3; (InterPro:IPR001452)|similar to 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein [Arabidopsis thaliana] (TAIR:AT1G20480.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE87408.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.90033784340586 6.23052958542342 0.000204919763954660 1 7.70105914852505 15.4308761307647 0.90033784340586 0.185023430982491
AT1G53850_at 9.20364749211194 9.46180770737962 9.82542981227095 9.76967770597328 9.80464454090831 9.54518965756992 9.50027225608808 9.20812056620783 8.38302239258374 8.27596310975883 9.12157461515663 9.23757332891525 8.91239193285959 9.0563657836554 8.96917271682003 8.83283638000674 9.14565828572075 8.71177587531265 8.22519535371383 0.166214806606370 0.158669052132135 0.166287355301795 0.164153578958499 0.161062950132155 0.160295180001935 0.161524985618336 0.158635503555687 0.181246264123263 0.171146750404416 0.170994312803260 0.158859913827960 0.168706986905449 0.161154254430257 0.168650396241078 0.159133707167961 0.158635503555687 0.161367095383524 0.166856270488176 1 1|0 -|/ 20107803 20108993 20108393.333 20107621 20109683 - gene protein_coding_gene FALSE TRUE AT1G53850.1|AT1G53850.2 PAE1 (20S proteasome alpha subunit E1); peptidase|PAE1 (20S proteasome alpha subunit E1) Encodes alpha5 subunit of 20s proteosome involved in protein degradation. Identical to Proteasome subunit alpha type 5-B (EC 3.4.25.1) (20S proteasome alpha subunit E-2) (Proteasome component Z) (PAE2) [Arabidopsis Thaliana] (GB:Q42134); Identical to Proteasome subunit alpha type 5-A (EC 3.4.25.1) (20S proteasome alpha subunit E-1) (PAE1) [Arabidopsis Thaliana] (GB:O81149;GB:Q56ZL5); similar to PAE2 (20S proteasome alpha subunit E2), peptidase [Arabidopsis thaliana] (TAIR:AT3G14290.1); similar to Proteasome subunit alpha type 5 (20S proteasome alpha subunit E) (20S proteasome subunit alpha-5) (GB:Q9M4T8); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.548232543260413 6.22729015576484 0.000205671833470091 1 7.69812979561339 18.1864215007261 0.548232543260413 0.0816158600302394
AT1G27340_at 6.5112400432182 6.3144248009708 5.40652907234003 5.17947330760776 5.35152121066145 5.15762553326977 6.19563999088659 6.26628971828468 6.18205263584731 6.05170307541282 5.97575666314236 6.01776837847721 5.72840468994132 6.10143085894234 6.54342663830941 6.029679197943 6.02059316756304 6.0033793635982 5.78292864219722 0.186649029175721 0.187673397475998 0.183316927971476 0.179065270150554 0.181739794274338 0.185345857491272 0.181128288897434 0.192403839709386 0.191450598206114 0.182386021792811 0.181572212907535 0.189432731228379 0.187406393813336 0.188859032771729 0.184116150050424 0.180794068640059 0.184536356868266 0.187445706968339 0.181014732502391 1 1 + 9497306 9497744 9497476.818 9495507 9498072 + gene protein_coding_gene FALSE TRUE AT1G27340.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G15710.1); similar to putative fimbriata [Oryza sativa (japonica cultivar-group)] (GB:BAD88307.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) -0.500558969391577 -6.22141518179897 0.000207043510053544 1 7.69281293471043 11.8269011201009 -0.500558969391577 0.0630825144171745
AT3G52240_at 8.13143705485894 8.11520793532524 7.86361992414129 8.11072730267203 8.19580999697781 8.57614389309007 6.94650729652959 6.96510153321827 6.73433098365184 6.33240018665577 6.67333712924238 6.86118050842356 6.83426779291046 7.07839936672615 6.31526670957699 7.0754025614263 7.4793350281758 7.16945476711545 6.44606654310823 0.188915742518668 0.186943757545840 0.185241707539059 0.181957129904012 0.192359371824484 0.192776310462589 0.191286315155168 0.20060174556354 0.211181793289701 0.189662185316783 0.190752242655080 0.184652373076843 0.193844304144029 0.183798176738917 0.207771592813645 0.184606598883750 0.184793337024582 0.192261915312001 0.182879297837344 3 3 - 19383904 19384442 19384195.091 19383692 19386858 - gene protein_coding_gene FALSE TRUE AT3G52240.1 similar to H0811D08.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86113.1); similar to Os05g0445800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055684.1); similar to Os05g0446500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055688.1) 0.539288201357491 6.21849788992516 0.000207728359017189 1 7.69017075019107 14.5831175608124 0.539288201357491 0.078606651586431
AT2G26190_at 8.204995612681 8.18415269937576 8.63906944940215 8.47625832919419 8.26277295106276 8.12138559151514 6.87312085247387 6.64417679211332 8.48267532261315 7.42827787377489 8.16902817677941 8.58711674914479 7.54220694015051 7.82921470584211 7.56325788461134 7.73708277937073 7.49283627403209 8.01547419851504 7.4962435146812 0.157677525290112 0.153976814477374 0.155374925726838 0.154003770334885 0.148383687263714 0.153705690672845 0.155428438510923 0.165471318583634 0.150867058292954 0.157850475253247 0.156915785406878 0.150391071963767 0.149615515122571 0.158004299501299 0.155499458761355 0.151555106268218 0.160973589684592 0.152498902945468 0.151648041545447 2 2|0 -|/ 11154988 11155714 11155336.3 11154717 11157588 - gene protein_coding_gene FALSE TRUE AT2G26190.1 calmodulin-binding family protein similar to EDA39 (embryo sac development arrest 39), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G33050.3); similar to Os01g0570800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043374.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46201.1); similar to Os05g0197300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054871.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.481444200499291 6.21791237308353 0.000207866111214926 1 7.68964028649037 15.7604545933500 0.481444200499291 0.0545459010952243
AT2G34720_at 8.69515698490909 8.86107152555055 8.22764473650238 8.67046859429232 8.97780704231705 8.33556249640366 9.64566828733461 9.70284769267214 9.21423495042201 9.2115233849851 8.49735089271265 8.53992246624953 8.86270170300087 8.72976239152162 7.85778182434472 8.69987029744643 8.74680120234894 7.87324688038252 9.3473500448512 0.139257206587006 0.133154573209293 0.135052934120708 0.134213531490924 0.136414896609850 0.152044135858808 0.138109746339433 0.136341383022999 0.134265355362443 0.133574743450858 0.133499519140194 0.133154573209293 0.138265077603160 0.138910707897235 0.151863793663462 0.13642791787393 0.142022160106800 0.148353561332213 0.133154573209293 2 2|0 -|/ 14657106 14657679 14657414.143 14656846 14658695 - gene protein_coding_gene FALSE TRUE AT2G34720.1 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-4 (AtNF-YA-4) (NFYA4) [Arabidopsis Thaliana] (GB:Q8VY64;GB:O64585); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT1G30500.2); similar to CCAAT-box transcription factor complex WHAP5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99388.2); similar to Os12g0613000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067261.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) -0.727544245703137 -6.21649767243871 0.000208199355835090 1 7.68835837869581 17.7563446703329 -0.727544245703137 0.138375373260625
AT3G63120_at 5.23527116455602 5.74076397688537 5.43953885706598 5.44156505556629 6.19010837862239 6.36799068061966 8.23145486160997 8.20420738005805 7.89078117235515 6.84032135996268 8.38865927513642 7.2610424452619 7.32202275016085 7.84517236471543 7.13601255399594 6.84102574108759 6.78594689871998 6.99855278685874 7.73199265956128 0.233998278660743 0.227333839494867 0.217015713668446 0.226726899603215 0.215782958078081 0.234202395263589 0.220706003274546 0.215782958078081 0.223795606450405 0.223789087785231 0.220578498140015 0.215782958078081 0.219183347245738 0.224384693940826 0.223182238104736 0.219921825818782 0.222459561632687 0.222169129701511 0.225049305594611 3 3 - 23334206 23334762 23334514.273 23333931 23335222 - gene protein_coding_gene FALSE TRUE AT3G63120.1 CYCP1;1 (cyclin p1;1); cyclin-dependent protein kinase similar to CYCP4,1 (cyclin p4,1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G44740.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os05g0398000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055471.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -0.579258824054852 -6.21583870250993 0.000208354781742724 1 7.68776115562474 13.7613639190155 -0.579258824054852 0.0928566283314874
AT4G36670_at 10.0408579960390 10.5887941127240 8.97501425152507 8.88910077548485 10.5922612702408 10.0221787011629 4.14318823100091 4.2988343534966 6.76317317666339 6.61890132385908 6.5120574883371 7.12936446633095 4.74179007461191 6.17041150230980 4.95768454409704 5.16008245701137 5.17168096927717 5.60485736250225 6.31547491568105 0.261085081918103 0.262562974982444 0.265448252182052 0.269906802104656 0.264360154894883 0.264540827512381 0.271600667338023 0.262790759534549 0.287249313706153 0.265765579850386 0.268047527844918 0.268041369394522 0.269232832253489 0.273897203127013 0.275856730196918 0.268102766692552 0.271722926023523 0.266893489419306 0.26101725104767 4 4 - 17287788 17288206 17287954.091 17287503 17289594 - gene protein_coding_gene FALSE TRUE AT4G36670.1 mannitol transporter, putative Identical to Probable polyol transporter 6 (PLT6) [Arabidopsis Thaliana] (GB:Q8GXR2;GB:O23213); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT2G18480.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE78857.1); similar to putative polyol transporter 1 [Lotus japonicus] (GB:CAJ29288.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.733430689473406 6.2105715216336 0.00020960169282145 1 7.6829850464366 14.5671991681897 0.733430689473406 0.140252767445179
AT3G16080_at 9.92322000451836 10.0377406789117 9.6296254526846 9.56356742859655 9.59789404176454 9.3171112729679 10.1222328177430 10.3696943456534 9.70857256575545 9.87004691227995 9.42918852494422 9.89605126223734 9.31426932588293 9.22710757105218 9.84002250192678 9.18999054707096 9.02151140690978 9.27846065649 9.93995157326952 0.103322159347555 0.101671761910194 0.108618580980878 0.107309954310816 0.104239512903439 0.110610308773471 0.105199838643210 0.102727089664402 0.10743255539115 0.103214064570506 0.103604296283499 0.102953488084694 0.102458423792880 0.105271498428881 0.107067208413330 0.103874017746061 0.110857489359760 0.109048642500873 0.103482560272584 3 3 + 5455039 5455650 5455427.909 5454824 5455933 + gene protein_coding_gene FALSE TRUE AT3G16080.1 60S ribosomal protein L37 (RPL37C) Identical to 60S ribosomal protein L37-3 (RPL37C) [Arabidopsis Thaliana] (GB:Q8LEM8); similar to 60S ribosomal protein L37 (RPL37B) [Arabidopsis thaliana] (TAIR:AT1G52300.1); similar to ribosomal protein L37 [Glycine max] (GB:AAS47512.1); contains InterPro domain Ribosomal protein L37e; (InterPro:IPR001569) -0.513060435953621 -6.21020771477183 0.000209688119285134 1 7.6826549957167 19.4396852095213 -0.513060435953621 0.0686908914896005
AT4G02860_at 8.92033913434597 9.17137086124404 9.3926307337184 9.39615290627063 9.98563337695812 9.49735819721522 9.52003034971543 9.33017306999896 7.81273836680439 8.88275007804734 9.2724244145209 9.65506139157413 9.4458800266154 9.49938020906094 9.4234686331595 9.19076672374189 9.00803798080127 9.21874509646068 8.70872512218963 0.130679933705368 0.127692662299418 0.133243305504309 0.127692662299418 0.128968484752903 0.139984435676279 0.127692662299418 0.131323232511255 0.15176093194229 0.13788746398616 0.130694245768572 0.127692662299418 0.134133886844616 0.130942416379794 0.132931978201794 0.133602029493398 0.149085099673510 0.134924708175603 0.140247913374864 4 4|0 -|/ 1268952 1269776 1269357.5 1268713 1270525 - gene protein_coding_gene FALSE TRUE AT4G02860.1 catalytic similar to phenazine biosynthesis PhzC/PhzF family protein [Arabidopsis thaliana] (TAIR:AT1G03210.1); similar to Phenazine biosynthesis PhzC/PhzF protein [Medicago truncatula] (GB:ABE77454.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) 0.601807410096274 6.20994990261693 0.000209749389161826 1 7.68242109218044 18.3053569529362 0.601807410096274 0.100533853276405
AT2G38180_at 6.79307812862647 6.05297841666076 6.76982294275226 6.46388264173507 7.74717018399533 7.417942913036 8.00810138611527 7.60560261838825 6.89106377761179 8.10789763702972 5.14426457614737 4.72403388476843 5.37418523637787 5.41732914673761 4.89379128025972 5.09841374160851 6.16561049320703 5.27133573592944 5.67772404225102 0.221318635715414 0.217677677004921 0.217677677004921 0.223232934557108 0.225522989061382 0.226558023188411 0.224907339592124 0.221284114550572 0.245013960112956 0.222497347881897 0.233957106875306 0.219765168075685 0.221631081424464 0.223709726900184 0.235566803240996 0.219899759261238 0.225143232178619 0.218803467942191 0.231880174307380 2 2|0 +|/ 16005059 16005725 16005425.9 16004192 16005984 + gene protein_coding_gene FALSE TRUE AT2G38180.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G11210.1); similar to CPRD49 [Vigna unguiculata] (GB:BAB33036.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.823171720409684 -6.20811591995632 0.000210185808025694 1 7.68075688250868 13.1839969026688 -0.823171720409684 0.165241642912563
AT3G19930_at 9.72323632236554 10.0067638913854 9.15513874948129 9.154907390805 10.1616713379021 9.67808737314857 7.52780034298695 7.38592289026535 9.21254137299144 7.63776413131822 8.53779425031805 9.05726904970476 8.34481215056345 8.73465612501463 8.20585218172072 8.07754646778107 7.56257771291647 8.44492724609999 7.29243623507805 0.183028338660243 0.179333558726034 0.180801810327873 0.183716089347532 0.178716917318467 0.179321665254989 0.178711962601360 0.183696411575801 0.187718374717474 0.183292837920933 0.188157384708700 0.177922996783003 0.182938030801563 0.180082193942676 0.193252726016806 0.176734625810522 0.209437604455965 0.177932578430742 0.193394643555621 3 3|0 +|/ 6936173 6936669 6936488.4 6934779 6937126 + gene protein_coding_gene FALSE TRUE AT3G19930.1 STP4 (SUGAR TRANSPORTER 4); carbohydrate transporter/ sugar porter Encodes a sucrose hydrogen symporter that is induced by wounding. Identical to Sugar transport protein 4 (Hexose transporter 4) (STP4) [Arabidopsis Thaliana] (GB:Q39228;GB:Q570J6); similar to STP11 (SUGAR TRANSPORTER 11), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G23270.1); similar to monosaccharide transporter (STP9) [Arabidopsis thaliana] (TAIR:AT1G50310.1); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT3G19940.1); similar to monosaccharide transport protein 1 [Zea mays] (GB:AAT90503.1); similar to monosaccharide transporter 6 [Oryza sativa (japonica cultivar-group)] (GB:AAQ24872.1); similar to monosaccharid transport protein [Vicia faba] (GB:CAB07812.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.599809584651206 6.20403636469806 0.000211160164545789 1 7.67705306022702 17.3083210261979 0.599809584651206 0.100068490640276
AT1G68820_at 6.75997837416065 7.00614197050431 7.25495954144543 7.30069746329224 7.8198735370609 7.29771110073688 6.43675105902736 6.24603817122635 5.40609956277449 5.96774698606701 6.20479865058171 6.24801447200651 6.22622874177589 5.89477489995423 6.1253668761296 5.93845872893037 6.25678193479834 6.04532561439617 5.69931237768977 0.231359716033965 0.220379801584539 0.225573409402508 0.220336006207827 0.231298423277817 0.226979972548206 0.233801577740762 0.228354695521809 0.231855086543785 0.218502430093686 0.218502430093686 0.224038134184600 0.218502430093686 0.234031256344358 0.221573190720914 0.225708407254504 0.256981721070989 0.22709267344442 0.218502430093686 1 0|1 /|+ 25871459 25872411 25871863.778 25869323 25872648 + gene protein_coding_gene FALSE TRUE AT1G68820.1 membrane protein, putative similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18470.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90658.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.616249390607686 6.19989352979154 0.000212154706706389 1 7.67328908232967 12.9195297598478 0.616249390607686 0.105508504854675
AT2G17380_at 8.73979656905703 8.76201290683618 8.66417103248317 8.77590797966225 9.0150314133032 8.88580680266483 8.39664939812652 8.13473609814692 8.2673507382284 7.49143991309618 8.65315482301387 8.6603518346521 8.48086121355762 8.70797074262909 8.34411546531547 8.54111117235646 8.33181403957923 8.23104313465392 7.8273984903321 0.151560395564593 0.151536542675654 0.159614313720694 0.160946234392952 0.151223987969175 0.160035987954547 0.152194941465223 0.154379168290814 0.165597130018797 0.176817516400713 0.156703883314927 0.153125277989778 0.152066306754319 0.151486643825313 0.153021101419368 0.150068362736540 0.156641929682106 0.158958682610492 0.152765182146388 2 2|0 +|/ 7561041 7561944 7561367.9 7560084 7562127 + gene protein_coding_gene FALSE TRUE AT2G17380.1 AP19 (associated protein 19); ATP binding / protein kinase Encodes clathrin assembly protein AP19. similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT4G35410.2); similar to AP-1 Gol (GB:AAB39510.1); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.479335159993764 6.19857810837096 0.000212471564615843 1 7.6720933843034 16.8496969502543 0.479335159993764 0.0542509914678923
AT1G01500_at 7.11329358064828 7.27123996139217 7.37686332967114 7.33700529349287 7.297261538112 7.27022353321742 7.13802335724119 7.39785895968765 6.03916020038593 6.11062749289334 6.75402245311606 6.98870146717102 7.29065930267536 6.8814298106951 7.00421307172981 6.89091542894758 6.81118185240005 6.66865910418848 5.99325932157934 0.173755729790616 0.173283665757118 0.169869136504444 0.175157818005935 0.175197461917663 0.176020369803265 0.171795938930222 0.177258069783781 0.186549189501009 0.18357074765894 0.175877463289224 0.169372421343163 0.169069087069184 0.181724609904536 0.173746165076524 0.169069087069184 0.179232129297521 0.175204192027241 0.180702853582041 1 1 + 185752 186511 186026 185133 186923 + gene protein_coding_gene FALSE TRUE AT1G01500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19400.2); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65010.1); similar to Os03g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051432.1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996:SF1); contains domain 2-HYDROXYACID DEHYDROGENASE (PTHR10996) 0.476887465980132 6.19278968991993 0.000213872055355314 1 7.66682853259241 13.7546737690087 0.476887465980132 0.0532776028033959
AT1G30970_at 5.3316697245956 5.15405038399124 5.86353613323984 5.76444304603288 5.73973868488467 5.8056725921525 5.19648483844773 4.16780700784864 3.15441903176268 4.46078306790805 4.77634607462566 4.65490263403392 4.67451782257667 4.57073595622244 4.81561697922588 4.96422015897999 5.17670874381036 4.49887368077182 3.88153383337563 0.214294874903279 0.214857269233671 0.223123190946014 0.219028501819085 0.218743033510912 0.226041842642530 0.226062217511645 0.222973684289595 0.255186951104019 0.230275192264211 0.224023949555056 0.220070036604948 0.220780231460528 0.218151226951751 0.215214730602948 0.214294874903279 0.220402405623537 0.218254626044784 0.214876008336027 1 1 - 11041434 11041894 11041675 11040262 11043732 - gene protein_coding_gene FALSE TRUE AT1G30970.1|AT1G30970.2 SUF4 (SUPPRESSOR OF FRIGIDA4); transcription factor|SUF4 (SUPPRESSOR OF FRIGIDA4) Encodes SUF4 (SUPPRESSOR of FRI 4), a putative zinc-finger-containing transcription factor that is required for delayed flowering in winter-annual Arabidopsis. suf4 mutations strongly suppress the late-flowering phenotype of FRI (FRIGIDA) mutants. suf4 mutants also show reduced H3K4 trimethylation at FLC (FLOWERING LOCUS C), a floral inhibitor. SUF4 may act to specifically recruit a putative histone H3 methyltransferase EFS (EARLY FLOWERING IN SHORT DAYS) and the PAF1-like complex to the FLC locus. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to Immunoglobulin/major histocompatibility complex; Zinc finger, BED-type predicted; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE94278.1); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to Immunoglobulin/major histocompatibility complex; Zinc finger, BED-type predicted; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE94278.1); contains domain SUBFAMILY NOT NAMED (PTHR23215:SF2); contains domain FAMILY NOT NAMED (PTHR23215) 0.882544785311028 6.19086565360202 0.000214339809523174 1 7.66507734710385 9.67729308504728 0.882544785311028 0.181822189053016
AT3G56950_at 7.42530113096424 7.68574601364146 8.02059132832304 8.04611129725818 7.62984492791243 7.4976812512617 7.16377487648679 7.20568771896251 5.13248752786099 6.40210137749816 6.49651626310515 6.8350538539203 6.58410357261481 6.35656299346688 6.21703071317208 6.54092256062793 6.85231418857999 6.2523251064208 6.46625339577291 0.186077268751641 0.192808240583505 0.189444170281421 0.198088811110058 0.201838269631143 0.194505495935275 0.185233030346253 0.185233030346253 0.212155639291826 0.187653614913576 0.193403938921491 0.190963609401649 0.185233030346253 0.191862088505967 0.188031923707074 0.185233030346253 0.193557919066562 0.193829358513844 0.189714959986795 3 3|0 -|/ 21089598 21090476 21089941.6 21089340 21090810 - gene protein_coding_gene FALSE TRUE AT3G56950.1 SIP2;1 (SMALL AND BASIC INTRINSIC PROTEIN 2); transporter One of the Major Intrinsic Proteins(MIPs) which facilitate the passive transport of small molecules across membranes.Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER. Identical to Probable aquaporin SIP2.1 (Small basic intrinsic protein 2.1) (SIP2.1) [Arabidopsis Thaliana] (GB:Q9M1K3); similar to SIP1,2 (SMALL AND BASIC INTRINSIC PROTEIN1B) [Arabidopsis thaliana] (TAIR:AT5G18290.1); similar to Major intrinsic protein [Medicago truncatula] (GB:ABE79842.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.47250132780978 6.18870777393235 0.00021486574866534 1 7.663112625611 13.8429095298676 0.47250132780978 0.0512506958654605
AT1G25320_at 6.14885418475325 6.41165787153814 4.5179482217124 4.82539611257104 5.7373701088186 5.75630221222878 3.99055687805674 3.93438562842504 4.12189271166309 3.97249722757976 5.25447640442341 5.45543225720835 3.98223864833016 4.87700559661702 5.52789525746265 4.53858760882433 4.73580433120318 4.91529730109367 3.80430786395232 0.238355372859714 0.244754792257985 0.242349381411588 0.243236269007709 0.252131745911435 0.242328613439332 0.23975566385851 0.246206099595577 0.248590488961293 0.2495803682227 0.242348287656999 0.240080772146627 0.243711972011194 0.239943640909207 0.242511727444987 0.237452674365694 0.239962515339115 0.237452674365694 0.249100119561953 1 1 + 8879613 8880130 8879851.909 8877844 8880297 + gene protein_coding_gene FALSE TRUE AT1G25320.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01210.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91521.1); similar to Os01g0514700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043190.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.516250048859851 6.18739169158452 0.000215187211570845 1 7.66191398593954 9.6038462906182 0.516250048859851 0.0707418207482687
AT2G37130_at 9.03987807732828 9.12595996337203 8.39530608776581 8.46094803445867 9.47750726213064 9.01601475257065 4.06397033473923 4.30363721265667 3.31817102477339 4.54125308848792 2.78307006375284 1.27876565257018 2.96783702432995 3.07286402012989 2.29950714429994 2.14206451453581 3.53588193596488 2.56231904221951 3.05127834149757 0.309283760014584 0.307511887409196 0.319584994869975 0.315902514335197 0.310641599139348 0.312869545075710 0.306372872515347 0.306372872515347 0.307138114902924 0.306372872515347 0.306372872515347 0.310802243952239 0.306372872515347 0.311298830081952 0.306372872515347 0.306727965897040 0.310903306337399 0.314087684565088 0.306372872515347 2 2|0 -|/ 15605338 15606207 15605687.1 15605000 15607156 - gene protein_coding_gene FALSE TRUE AT2G37130.1 peroxidase 21 (PER21) (P21) (PRXR5) Identical to Peroxidase 21 precursor (EC 1.11.1.7) (Atperox P21) (PRXR5) (ATP2a/ATP2b) (PER21) [Arabidopsis Thaliana] (GB:Q42580;GB:Q43733;GB:Q93YM9); similar to PRXR1 (peroxidase 42), peroxidase [Arabidopsis thaliana] (TAIR:AT4G21960.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:BAC84057.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.573735246839903 6.18598166361051 0.000215532206730126 1 7.66062947814495 10.8439974621169 0.573735246839903 0.091920295066784
AT2G45340_at 6.2120909243225 6.94709902812048 5.70030017693151 5.78730965517024 5.96441618681447 6.08199290621834 8.27973889331334 8.06024984103199 6.74180860883208 7.54822591422991 7.67058772808664 7.78979141647154 7.75052313710214 7.58392774322814 7.03037623800104 7.96324085422688 7.51283789494433 6.79955794160795 8.04758737374743 0.251114609203926 0.251114609203926 0.253412609116788 0.260888624417442 0.253525799224814 0.266745272800384 0.262857965570907 0.254307189253532 0.280941783537739 0.266194825508666 0.267154991147673 0.251114609203926 0.258772238147600 0.267392906999063 0.269597657366687 0.251114609203926 0.280069509720135 0.270212289761087 0.260532808326815 2 2|0 +|/ 18700866 18701510 18701204.8 18698796 18701776 + gene protein_coding_gene FALSE TRUE AT2G45340.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G22730.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G51560.1); similar to Os06g0134700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056717.1); similar to putative somatic embryogenesis protein kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68873.1); similar to Os01g0577600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043393.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.712279268403996 -6.1819515581528 0.000216521611693137 1 7.65695638598948 14.1083893688962 -0.712279268403996 0.135138661872435
AT3G55430_at 7.15917570295338 7.51156594392566 7.88289300183039 8.11990055174986 8.24008563205677 8.22293920655908 7.46832227993947 7.92272771415014 7.93643954147914 7.50812004260624 8.92827428377073 8.43748174923694 8.71156524086576 8.64316004154669 8.5018261182 8.21524391414707 8.1818325424605 8.37975341827097 8.13074644376841 0.150415317145858 0.139211087377974 0.143439538324044 0.141590979734774 0.145009742280504 0.146254986025292 0.146140886086031 0.140796452448759 0.154066047338004 0.144034287345878 0.146012014694383 0.140524643456444 0.145616535005102 0.151403586758977 0.144055316259797 0.141777981026436 0.151460105709881 0.148618470280730 0.144313929693865 3 3 - 20560845 20561324 20561057.364 20560576 20563192 - gene protein_coding_gene FALSE TRUE AT3G55430.1 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT2G39640.1); similar to beta-1,3 glucanase [Pisum sativum] (GB:CAB85903.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.621231754375634 6.181613224461 0.000216604900132344 1 7.6566479064416 15.9951150072357 0.621231754375634 0.107674183385221
AT1G68020_at 5.14592216836596 5.32624983106194 5.29988213763908 5.2535984923865 5.87082757334448 5.78720131338539 5.29763385084609 5.43713476468125 4.3939940212264 4.2174850694315 4.92032234890012 5.03053219918711 5.70415412916207 5.00542833321154 4.79565055830435 5.06820644257334 5.76421582694164 5.12224388310048 4.9351415414705 0.20404563897385 0.197321514997117 0.199955491779732 0.197413324459398 0.197180661261014 0.196371939283820 0.195668033286275 0.201666640831996 0.203806118513101 0.204953170558066 0.212950257640210 0.194321817411285 0.200006943927159 0.203134218584368 0.195615448435469 0.194786994805038 0.197149855760603 0.207158216121388 0.200461519245005 1 1 + 25502711 25503224 25502954.727 25500953 25504037 + gene protein_coding_gene FALSE TRUE AT1G68020.1|AT1G68020.2 ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); transferase, transferring glycosyl groups / trehalose-phosphatase|ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6); trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G06410.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)] (GB:AAN52740.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830)|similar to ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G06410.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)] (GB:AAN52740.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.455973114956581 6.17653991297751 0.000217858032031299 1 7.65202007056216 10.2732484794049 0.455973114956581 0.0427813033469588
AT2G20010_at 6.93048045659921 6.96623794660775 6.97657852620479 7.28213073615312 6.82061350436303 6.89432583465465 5.99147725391077 6.00842705719261 5.95335902252895 6.04127135193961 6.50884284956214 5.98709572295891 6.24678967943694 6.29888410753382 6.24280983127846 6.2905487459919 6.55299822965322 6.21269360809427 5.56841803092137 0.194007864661711 0.187029924663975 0.189739504037419 0.190985564522114 0.187029924663975 0.19758295899012 0.192671547940207 0.194062764243199 0.193197210018913 0.192592189933518 0.191695728820575 0.190263944689831 0.187029924663975 0.187319164852087 0.19654098848157 0.187029924663975 0.196314636219700 0.197661248526981 0.194657482729964 2 2 - 8645104 8645621 8645399.818 8644828 8648637 - gene protein_coding_gene FALSE TRUE AT2G20010.1|AT2G20010.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28473.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05347.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE78559.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25800.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33420.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28473.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05347.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE78559.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528) 0.478744925058359 6.17560758747942 0.000218089184398244 1 7.65116916420847 12.8072500720993 0.478744925058359 0.0548235302824426
AT1G67360_at 9.87295966694396 9.96562108130854 10.7628419699157 10.8107281546044 10.2828374744435 9.80226350033685 9.65367046246772 9.56980676597911 6.40770771151963 7.37946459367826 6.38146298949923 6.23843675566791 8.14758684552706 7.4366203300313 6.63096715559767 7.90587041536942 8.49721503362173 7.44219615182072 6.82496125269101 0.260612422216501 0.254601290206082 0.260503779221321 0.254601290206082 0.25554554375485 0.273610909977342 0.254994952213539 0.254601290206082 0.28548794988142 0.27018342237202 0.258452538604155 0.264268981411269 0.257965362129776 0.255301642497778 0.269596765536455 0.258845598356026 0.262794875967918 0.25651875277977 0.269116009210828 1 1 - 25240763 25241408 25241097.091 25240474 25241879 - gene protein_coding_gene FALSE TRUE AT1G67360.1|AT1G67360.2 rubber elongation factor (REF) family protein Identical to REF/SRPP-like protein At1g67360 [Arabidopsis Thaliana] (GB:Q9FYF7); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to Stress-related protein (GB:Q9SW70); contains InterPro domain Rubber elongation factor; (InterPro:IPR008802) 0.556743277164597 6.17551965624079 0.000218110999150031 1 7.65108890477469 17.1929689573024 0.556743277164597 0.0863304639554153
AT2G39900_at 7.26604412207272 7.07107627700692 4.21135189273165 4.08247238527959 4.38265276787547 5.19257322707214 3.8336887231425 3.91836581676111 4.13752039427941 4.30674087108363 7.25947143853058 7.56605669524875 5.75817746319915 6.66604324237864 8.5104938456165 5.07839630244517 5.47109466797642 7.07019843066025 3.9022199045577 0.206745297754181 0.208448803441394 0.215592635412438 0.222033533715689 0.211378179978750 0.217523527569925 0.216537918521286 0.211838890191761 0.213444153298740 0.217278655061602 0.206167870083047 0.206843845786052 0.213527887909942 0.213892443174202 0.215164930528211 0.206452028353006 0.208265136878352 0.206167870083047 0.209472273767604 2 2|0 +|/ 16666257 16667258 16666782.2 16665734 16667515 + gene protein_coding_gene FALSE TRUE AT2G39900.1 LIM domain-containing protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G55770.5); similar to LIM domain protein WLIM2a [Populus tremula x Populus alba] (GB:ABK58469.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) 0.750983310471962 6.16988779003338 0.000219513198664818 1 7.64594583786368 10.3887707685247 0.750983310471962 0.146613535954992
AT2G30620_at 10.7062279393840 10.6987105199850 10.9744970714492 11.0507583637182 11.2239326851398 11.1070907333012 10.7299421023007 10.7781946608827 10.5154659032546 10.5702475621808 10.9710513018728 10.9924347731989 10.8185693069681 10.7490132190189 11.0698718536689 10.9598385024562 10.940302977317 10.7240997753155 10.1174562309636 0.0735390359341606 0.0737805009812898 0.0765683555934618 0.0734837409401488 0.0735094645125865 0.0748261620244942 0.0755048473238965 0.0777336146534036 0.0809518585016124 0.07386193668742 0.0733347453141175 0.0732879568180805 0.074355834805948 0.0766480905466621 0.0756807876006123 0.0728702371645205 0.077402661633682 0.0790986587756305 0.0816837432421035 2 2 + 13052801 13053289 13053110.545 13052008 13053588 + gene protein_coding_gene FALSE TRUE AT2G30620.1 histone H1.2 Identical to Histone H1.2 [Arabidopsis Thaliana] (GB:P26569); similar to histone H1, putative [Arabidopsis thaliana] (TAIR:AT1G06760.1); similar to histone H1 [Apium graveolens] (GB:CAA73171.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Histone H5; (InterPro:IPR005819); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.431446028012348 6.16985213097449 0.000219522108345030 1 7.6459132575968 21.5607713991168 0.431446028012348 0.0255820496372753
AT1G52340_at 6.86760891118831 7.00004024594052 5.70161590721475 5.82145606893951 7.00181015948824 5.9813964245233 7.8533863220425 7.8266143050634 8.20853580347091 7.79383839931635 7.54737049963641 7.79184272160721 7.74829545506228 7.72994816106636 7.62820254067964 7.73646769363901 6.89479555442656 7.38379151233704 8.1103832158051 0.191496734002499 0.177208977001849 0.193250699387777 0.202821542572771 0.176813378031103 0.191664209979698 0.185175950085935 0.184296271184984 0.194378742479128 0.184563634437301 0.181538236802726 0.180333301463966 0.184949975589291 0.190486916873815 0.186900627028597 0.176249771466072 0.190918158938035 0.183320662648241 0.181965896715176 1 1 - 19493670 19494174 19493875.545 19493463 19495317 - gene protein_coding_gene FALSE TRUE AT1G52340.1 ABA2 (ABA DEFICIENT 2); oxidoreductase Encodes a cytosolic short-chain dehydrogenase/reductase involved in the conversion of xanthoxin to ABA-aldehyde during ABA biosynthesis. Mutants are insensitive to sucrose and glucose. similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G51680.1); similar to short-chain dehydrogenase/reductase [Solanum tuberosum] (GB:AAT75153.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.870169672453936 -6.16941980799661 0.000219630158997232 1 7.6455182451087 14.5543285798022 -0.870169672453936 0.179331785757950
AT2G39460_at 9.9128341480752 10.4733249878552 9.61152877704385 9.64463746196365 9.69475317102379 9.46103351150658 10.4635707981205 10.7903542233765 10.4222885043348 10.1298518192765 9.76341181469625 10.1248446969510 9.71198270717394 9.65027303364618 10.1644168529429 9.46769075619858 9.1743855373078 9.56741626651563 10.0812139331608 0.103234538434020 0.0990849560591629 0.104227714491718 0.106367762045168 0.100807008083044 0.102764458863724 0.0996703567607685 0.0992145521114293 0.103823523818425 0.0991438208080635 0.101748304029989 0.0990849560591629 0.105114172429426 0.10280532181342 0.102246312294009 0.0990849560591629 0.116367256554609 0.108332823878668 0.101763095129915 2 0|2 /|+ 16482490 16482927 16482672 16482001 16483186 + gene protein_coding_gene FALSE TRUE AT2G39460.1 ATRPL23A (RIBOSOMAL PROTEIN L23A); RNA binding / structural constituent of ribosome Encodes a putative ribosomal protein L23a (AtrpL23a). Identical to 60S ribosomal protein L23a-1 (AtRPL23A-1) (RPL23AA) [Arabidopsis Thaliana] (GB:Q8LD46;GB:O48553;GB:O80633); similar to 60S ribosomal protein L23A (RPL23aB) [Arabidopsis thaliana] (TAIR:AT3G55280.2); similar to unknown [Brassica rapa] (GB:ABB97038.1); contains InterPro domain Ribosomal protein L23, N-terminal; (InterPro:IPR005633); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ribosomal protein L25/L23; (InterPro:IPR013025); contains InterPro domain Ribosomal L23 protein; (InterPro:IPR001014) -0.657549093192013 -6.1648792241926 0.000220768518141575 1 7.64136772250782 19.9635900317555 -0.657549093192013 0.119477728559590
AT1G48520_at 7.37953826604977 7.51399763385739 6.93432848280259 6.79013080561618 7.11141198396568 7.28638629241275 7.79464622745265 7.65628622060146 8.01361904449922 8.17384379876515 7.68870314216796 8.09717941496272 7.46538462836001 7.31797448670366 8.05745248898549 7.71893200750887 7.545605822605 7.77836549029674 8.09693598988547 0.184610065034330 0.183226265940038 0.195956892411153 0.187574868766061 0.193788385763052 0.186259972803555 0.186313335549475 0.181391155284034 0.198037681324584 0.187071149373515 0.181452653435250 0.181323176364242 0.192964774598642 0.187729950048942 0.190559768612304 0.180933177835593 0.184761438223051 0.191776441105367 0.180771647316210 1 1|0 +|/ 17945214 17946175 17945625.8 17943756 17946490 + gene protein_coding_gene FALSE TRUE AT1G48520.1|AT1G48520.2|AT1G48520.3 GATB (GLU-ADT SUBUNIT B); glutamyl-tRNA(Gln) amidotransferase Encodes Glu-tRNA(Gln) amidotransferase subunit B (from Genbank record AF239836). similar to Os11g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068056.1); similar to Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94201.1); contains InterPro domain GatB, central region; (InterPro:IPR006107); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase B subunit; (InterPro:IPR004413); contains InterPro domain GatB/Yqey; (InterPro:IPR003789); contains InterPro domain GatB N-terminal region; (InterPro:IPR006075)|similar to Os11g0544800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068056.1); similar to Aspartyl/glutamyl-tRNA amidotransferase subunit B, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94201.1); contains InterPro domain GatB, central region; (InterPro:IPR006107); contains InterPro domain Phospholipase C/P1 nuclease; (InterPro:IPR008947); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase B subunit; (InterPro:IPR004413); contains InterPro domain GatB/Yqey; (InterPro:IPR003789); contains InterPro domain GatB N-terminal region; (InterPro:IPR006075) -0.47082631082108 -6.15980186813238 0.00022204911759392 1 7.63672264057308 15.2100903872192 -0.47082631082108 0.0515202631508263
AT1G47960_at 7.78384585760147 7.81821481676241 8.59584046720683 9.11514675690488 9.71862516568643 8.9854384158971 8.3582620152561 8.59499409499128 5.78976719293571 6.77711587794564 6.68552610575832 6.7021640941591 6.85616039418329 6.66756584123261 6.27765151656681 7.46923568569125 7.7098189103371 6.58580835204725 6.13111759778541 0.264012511881724 0.256633249388829 0.265516008629172 0.256633249388829 0.26177004195553 0.267423587871527 0.256633249388829 0.261305706600799 0.269326284046018 0.264147654349281 0.256633249388829 0.265356270906056 0.258488106251474 0.265737422202710 0.259097570816008 0.256633249388829 0.25931827290564 0.261165487617913 0.257521499126797 1 1 - 17686152 17687069 17686448.091 17684826 17687298 - gene protein_coding_gene FALSE TRUE AT1G47960.1 C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1); pectinesterase inhibitor Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling. similar to invertase inhibitor-related [Arabidopsis thaliana] (TAIR:AT3G17140.1); similar to invertase inhibitor [Nicotiana tabacum] (GB:CAA73333.1); similar to invertase inhibitor [Nicotiana langsdorffii x Nicotiana sanderae] (GB:ABB17076.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.800753989106192 6.15829223555015 0.000222431442914198 1 7.63534074022344 15.1722500748146 0.800753989106192 0.160900372403783
AT1G61350_at 5.70726727629324 6.12274860130659 3.89816489262764 4.15898338580919 4.69222568248696 4.38977165099998 4.83165078654761 5.22924276964142 5.65903359836434 5.36593940958356 5.82427733499209 6.37995197458813 5.38516034685272 5.43733601374409 5.40399703466498 5.80292542828004 4.91971306357574 4.79986645326875 5.86111842854296 0.209680195370657 0.202607182074708 0.203546143889535 0.204849576100365 0.200992028826342 0.205356691955046 0.202712691319414 0.200510931810161 0.207424512246053 0.199095089969311 0.202813289644637 0.199095089969311 0.199095089969311 0.206739882619374 0.199095089969311 0.206489971532251 0.206070095128844 0.203430640131281 0.203653575981355 1 1 + 22638919 22639460 22639157.364 22637547 22639559 + gene protein_coding_gene FALSE TRUE AT1G61350.1 armadillo/beta-catenin repeat family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G45720.2); similar to Armadillo [Medicago truncatula] (GB:ABE88966.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.661242322358705 -6.14750959648579 0.000225183303743730 1 7.62545983966136 10.4401821815855 -0.661242322358705 0.121164077223742
AT1G22660_at 5.05193097109991 5.20548432027997 4.7703237865701 4.65433023577244 4.78577020327236 4.43315728334582 5.20416211581546 5.47431520577903 4.76140936735452 4.92693588428862 4.19285177959706 4.43563542480457 3.89443998122994 4.1122951035309 4.37800545599334 4.30505823206208 4.49400453509748 4.80742405135652 4.85722824084743 0.219274419007124 0.214532516136642 0.216152558776556 0.220278579218195 0.221185160044935 0.225080343002940 0.213813826381247 0.211811378605649 0.236518008802153 0.214021638410312 0.215765869305359 0.221166415978886 0.219116040667958 0.218686163665827 0.226013106905138 0.211811378605649 0.224269642696368 0.219148435077411 0.21194328001393 1 1|0 +|/ 8019998 8020883 8020288.25 8017386 8021701 + gene protein_coding_gene FALSE TRUE AT1G22660.1|AT1G22660.2 tRNA-nucleotidyltransferase, putative / tRNA adenylyltransferase, putative similar to polynucleotide adenylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G17580.1); similar to tRNA nucleotidyltransferase (GB:AAB03077.1); contains InterPro domain Nucleotidyltransferase/Poly(A) polymerase; (InterPro:IPR012277); contains InterPro domain Polynucleotide adenylyltransferase region; (InterPro:IPR002646) -0.547068976520642 -6.14698249143785 0.000225318780985748 1 7.62497633885206 9.5354286742198 -0.547068976520642 0.0837755640267345
AT3G52560_at 10.0436104803619 10.1398286909237 10.3494189645571 10.3911373574356 10.384281407254 10.4982759655823 9.905587271734 10.0477929595826 10.0644837620995 9.87032888689964 10.6823380032813 10.3975449128601 10.459821815909 10.4621793857924 10.4889432417425 10.5420798975043 10.3118235766933 10.3608345178282 9.907650887052 0.0863908511186939 0.084578306359811 0.086472784021551 0.0839243924185098 0.0843129852022973 0.0833750617175512 0.0880300216121403 0.0946117563394697 0.0843827139105204 0.0844229953135172 0.0842716062067957 0.0853154375890888 0.084656090823301 0.0836143003714705 0.0838042406959018 0.0830876488726554 0.0872972937651434 0.083927636659327 0.0870652843410241 3 3|0 -|/ 19505658 19506905 19506004.3 19505359 19507062 - gene protein_coding_gene FALSE TRUE AT3G52560.1|AT3G52560.2|AT3G52560.3 MMZ4 (MMS ZWEI HOMOLOGE 4); ubiquitin-protein ligase|MMZ4 (MMS ZWEI HOMOLOGE 4) similar to MMZ3 (MMS ZWEI HOMOLOGE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G36060.1); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ3 (MMS ZWEI HOMOLOGE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G36060.2); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ3 (MMS ZWEI HOMOLOGE 3), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G36060.2); similar to TO38-23 [Taraxacum officinale] (GB:ABA26987.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.443640698328841 6.14694133504494 0.000225329362817079 1 7.62493858520871 20.4253333943298 0.443640698328841 0.0363890734276397
AT3G53700_at 6.6162949024845 7.2391692474631 6.0065468848843 6.28937367482179 6.64374825169194 6.28702729887878 7.58903336300221 7.44041780429449 5.97500322411363 7.14803055622326 6.32100646454912 6.38021263909705 6.27956286260225 6.0537560847082 6.45168240459632 6.45141884063244 6.03671951263851 5.0352700422038 6.77795923255768 0.225748788939023 0.225272206523435 0.231726447439464 0.224246517273019 0.225182217374457 0.232745134026971 0.224089568265075 0.222745334418549 0.247096332996928 0.229261574473411 0.229563166833830 0.224663968984194 0.226573619248521 0.228645887177231 0.224605947449327 0.224171025733559 0.225748867204364 0.238488983982025 0.222745334418549 3 3 + 19912961 19913515 19913284.273 19911258 19913862 + gene protein_coding_gene FALSE TRUE AT3G53700.1 MEE40 (maternal effect embryo arrest 40); binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G64320.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97191.1); similar to Os03g0597200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050605.1); similar to putative membrane-associated salt-inducible protein [Oryza sativa] (GB:AAG59660.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.711007766497466 -6.14622867128215 0.000225512684148590 1 7.62428480042788 13.1438854004451 -0.711007766497466 0.135966337457101
AT3G26580_at 11.5313530828762 11.6598264580911 12.0431542126622 11.9641308981146 12.2826149838142 12.1359079459040 11.721081787781 11.4961751522401 11.0434792057820 11.3152458396175 11.7883448398168 11.3958949274763 11.7142161509832 11.5019697396920 11.2891869867352 11.7113962000941 11.8255668885364 11.4479140735585 11.0687403865918 0.0829847432358601 0.0829847432358601 0.0843334972044416 0.0835189859845898 0.0829847432358601 0.0829847432358601 0.0844380789948891 0.0854876448371665 0.094620037472115 0.0881012831692333 0.0833390727342992 0.0829847432358601 0.0833141126374355 0.085530082335385 0.0873168759759966 0.0829847432358601 0.0877851302174055 0.0892561246044282 0.0892193614426322 3 3 + 9760956 9761556 9761258.818 9760124 9761781 + gene protein_coding_gene FALSE TRUE AT3G26580.1 binding similar to hypothetical protein [Spinacia oleracea] (GB:CAA74590.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.473082819203874 6.14283114149168 0.000226388895031655 1 7.6211668503546 23.2176804167814 0.473082819203874 0.0532986007608046
AT1G47250_at 7.36263707691577 7.6484306977038 7.99646757283458 7.76597480476957 7.8184898378352 7.74012594732881 7.9510004784231 7.72719658769259 6.50095815163165 6.81372267074865 7.54224520805104 7.74149264285344 7.52288042855521 7.35167117194926 7.4937620064932 6.88500145095798 7.42154601487714 7.10819662496656 6.16051407296784 0.178387791136180 0.183967764994104 0.182041036047839 0.180398900312990 0.177625923077395 0.184812601248293 0.185381170040658 0.180146073164369 0.203941625490761 0.182456685917948 0.184899443114106 0.182109282118619 0.188333888273256 0.193171707805425 0.183636554970210 0.182346428260507 0.185819798551622 0.189768776816204 0.195896051490461 1 1 + 17321900 17323270 17322934.818 17321617 17323514 + gene protein_coding_gene FALSE TRUE AT1G47250.1 PAF2 (20S proteasome alpha subunit F2); peptidase Encodes 20S proteasome subunit PAF2 (PAF2). Identical to Proteasome subunit alpha type 1-B (EC 3.4.25.1) (Proteasome subunit alpha type 6) (20S proteasome alpha subunit F-2) (Proteasome component 2B) (PAF2) [Arabidopsis Thaliana] (GB:O23712); similar to PAF1 (proteasome alpha subunit F1), peptidase [Arabidopsis thaliana] (TAIR:AT5G42790.1); similar to 20S proteasome alpha 6 subunit [Nicotiana benthamiana] (GB:AAN07899.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.524783071156745 6.14092935786227 0.000226880987094575 1 7.61942075572217 14.6888309131233 0.524783071156745 0.0756377553383969
AT2G39250_at 7.27060610333862 6.77654555325264 5.09702927403676 5.00455494072387 5.4952085477985 4.25254890338729 7.94850210786595 7.4531624479167 5.48697443593305 6.99131425169761 6.7732007099834 6.97096734352247 6.44777665378627 6.09396674698777 6.25828673346535 5.65781382748083 6.55317580216937 6.16865273037288 6.18269093907391 0.254361554794818 0.266919414690616 0.276486300139013 0.255864383107003 0.262798140440091 0.27940446213446 0.267695187819269 0.265083673792671 0.272087480557870 0.258776221041080 0.260801350358227 0.254361554794818 0.254361554794818 0.262074252414927 0.26248048851671 0.25787890395274 0.279872934270012 0.259624165876992 0.259270087764433 2 2|0 -|/ 16396912 16397778 16397341.143 16395964 16398151 - gene protein_coding_gene FALSE TRUE AT2G39250.1 SNZ (SCHNARCHZAPFEN); DNA binding / transcription factor Encodes a AP2 domain transcription factor that can repress flowering. SNZ and its paralogous gene, SCHLAFMUTZE (SMZ), share a signature with partial complementarity to the miR172 microRNA, whose precursor is induced upon flowering. similar to SMZ (SCHLAFMUTZE), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G54990.1); similar to PHAP2B protein [Petunia x hybrida] (GB:AAD39440.1); similar to Floral homeotic protein APETALA2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99568.1); similar to transcription factor AP2D23-like [Oryza sativa (japonica cultivar-group)] (GB:AAW78371.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -1.12735755518535 -6.14068274009073 0.000226944886007914 1 7.61919428480488 12.455173040143 -1.12735755518535 0.24730545042211
AT1G31970_at 8.17708270953803 8.49723528708574 8.00644719375954 8.16504876517667 8.46510160891622 8.07665003269688 8.97117890891986 9.02238946949094 6.59234836368899 7.34645650126887 6.3974099594331 6.80183322771913 6.46055615319553 5.89022865430559 6.82656779457995 6.68396498478459 7.47190072124127 6.46553344361793 7.88342318355053 0.193143344750691 0.193877874222159 0.200496598596729 0.198467410492079 0.197372828269036 0.194082569661157 0.199784704067538 0.194546271833180 0.220193376434673 0.19690326256589 0.197891184507823 0.195900721507984 0.197743615574411 0.205534828892782 0.205632164235976 0.193946049171163 0.207268853984669 0.192252311984342 0.204724779732383 1 1|0 +|/ 11481625 11482628 11482073.667 11479846 11482870 + gene protein_coding_gene FALSE TRUE AT1G31970.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 5 (EC 3.6.1.-) (RH5) [Arabidopsis Thaliana] (GB:Q9C551;GB:Q9ZS13); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to Os07g0301200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059424.1); similar to RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAC78594.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.56899317121557 -6.13976765212543 0.000227182158702041 1 7.61835386761294 15.3720544387125 -0.56899317121557 0.0917629236952537
AT3G25600_at 7.37802177952254 7.68417417378427 7.51181167891159 7.70063755522677 7.57800958772515 6.97413642376984 6.02831466860332 6.41499592102157 6.22860272794767 4.93431878425433 6.94006026281341 7.08067587453645 6.43659909544249 7.01945760022886 6.70160226319858 6.20314520873917 5.74115156605535 5.66261591954776 5.63194487858962 0.221922654720734 0.221695507004865 0.224451478983165 0.215957907295593 0.215957907295593 0.226513208004961 0.221044204529006 0.216773244504403 0.231956686897592 0.223107838794932 0.223650322501404 0.215957907295593 0.226172429625481 0.221844556720296 0.234031675028218 0.221879901440431 0.227127356776178 0.225789776135701 0.230007695232425 3 3 + 9308647 9309063 9308837.909 9308491 9309204 + gene protein_coding_gene FALSE TRUE AT3G25600.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G18530.1); similar to Os05g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056407.1); similar to Os01g0604500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043511.1); similar to EF-Hand type [Medicago truncatula] (GB:ABE85120.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.719823426282565 6.13711720388054 0.000227870928009592 1 7.6159189375134 13.1944888589460 0.719823426282565 0.138829288773011
AT3G18210_at 5.97389087545359 6.03908478614483 6.16638291951489 6.4849799369495 7.18104763977334 6.95585911155991 6.44006303296486 6.60910458412148 5.53329239711951 5.41200185244545 5.63091730523013 5.64113971475502 5.94305205487021 5.9241972829389 6.44237201748168 6.04106404840492 6.45786594394122 5.91105915884117 5.21913952042383 0.192633725077999 0.189121738774562 0.197494815280406 0.193353356116326 0.196167880425104 0.199557122764031 0.196768648851118 0.191294051015373 0.215414433932279 0.188010781727703 0.188112034030828 0.197014490602146 0.192239651645270 0.197979865723948 0.200179418556426 0.192019948576623 0.21019459306848 0.194426074531548 0.189336771828795 3 3|0 -|/ 6238271 6239326 6238812.5 6237936 6240611 - gene protein_coding_gene FALSE TRUE AT3G18210.1|AT3G18210.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein|oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors similar to oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G22950.1); similar to hypothetical protein DDBDRAFT_0190977 [Dictyostelium discoideum AX4] (GB:XP_646715.1); similar to Os01g0502400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043135.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.521172716544933 6.13469848726123 0.000228501475577983 1 7.6136959132929 12.1748531262124 0.521172716544933 0.0744415158587672
AT4G04910_at 8.52589200619457 8.67857531595677 8.52936811054718 8.60598207386843 8.69322219064084 7.8337439193684 8.03083240192956 8.13104711353936 6.7759482008696 6.79550512816213 8.40050513989072 8.75790414226291 8.24492748190558 8.17553635578982 8.32796923947402 8.0769154790189 7.92256074121591 7.89898876482475 6.72273935617883 0.186164084868898 0.186835261613358 0.198991341911257 0.191685789823894 0.187860742787171 0.192870070874933 0.187092397271154 0.182273147994166 0.216236206733046 0.195134895712132 0.188340168965744 0.182992385385985 0.186264423230848 0.196179155859049 0.184880402205453 0.184114643052773 0.203761123836068 0.189705422103951 0.196866774197186 4 4|0 -|/ 2489701 2490950 2490269.667 2489415 2495764 - gene protein_coding_gene FALSE TRUE AT4G04910.1 NSF (N-ETHYLMALEIMIDE SENSITIVE FACTOR); ATP binding / nucleoside-triphosphatase/ nucleotide binding N-ethylmaleimide sensitive factor Identical to Vesicle-fusing ATPase (EC 3.6.4.6) (Vesicular-fusion protein NSF) (N- ethylmaleimide sensitive fusion protein) (NSF) [Arabidopsis Thaliana] (GB:Q9M0Y8;GB:Q9ZPH6); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to AAA+-type ATPase (ISS) [Ostreococcus tauri] (GB:CAL52796.1); similar to Os05g0519400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056063.1); similar to N-ethylmaleimide sensitive fusion protein [Nicotiana tabacum] (GB:BAA13101.1); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase VAT, N-terminal; (InterPro:IPR003338); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.767462443589396 6.13024763953987 0.000229666794052118 1 7.60960272084118 15.8737800480646 0.767462443589396 0.152634584279544
AT3G54220_at 5.17792944336386 5.47445876495328 4.87099490027056 4.55078169346752 4.43529659623449 4.80385795848535 5.57371350530931 6.02763008751148 6.34492481613876 5.81755473444202 5.56237964825388 5.31829600016266 6.1938713785298 5.9573099084595 5.56075141900044 5.73563148510962 5.29186849989313 5.26024421017478 6.02655362467090 0.213440669568741 0.205987670188738 0.217062094807186 0.213505167150971 0.205987670188738 0.214661436355388 0.215466623526189 0.205987670188738 0.224216565283877 0.215695413080057 0.211140677478882 0.210604903399880 0.205987670188738 0.21956811758092 0.20950072645147 0.209132636700078 0.228117261450290 0.210423125199169 0.227835548032987 3 3 + 20082892 20083568 20083185.727 20081136 20083758 + gene protein_coding_gene FALSE TRUE AT3G54220.1 SCR (SCARECROW); transcription factor Encodes a member of a novel family having similarity to DNA binding proteins containing basic-leucine zipper regions; scr is expressed in cortex/endodermal initial cells and in the endodermal cell lineage. Regulates the radial organization of the root. Is required cell-autonomously for distal specification of the quiescent center, which in turn regulates stem cell fate of immediately surrounding cells. similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT5G41920.1); similar to SCARECROW [Cucumis sativus] (GB:CAI30892.1); similar to SCARECROW [Pisum sativum] (GB:BAB39155.1); similar to SCARECROW [Ipomoea nil] (GB:BAE48702.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.675583576444626 -6.1238149686413 0.000231362520114030 1 7.60368134023064 10.9508604322571 -0.675583576444626 0.126263969872008
AT4G02420_at 9.14538169552002 9.44362222308803 8.84905080649386 9.0504249430055 7.85941078030664 7.66432005434799 8.76437372034383 9.0762573750338 9.5420962164427 8.51681003454829 8.48681192190895 9.45917649694517 8.23751018411399 8.6729674923166 8.61225541234116 8.55224432682921 7.8367421119029 9.09369039735988 8.89792853563329 0.153257054356186 0.139970366045492 0.138297749606620 0.139564556246661 0.140146539375357 0.149335950529963 0.139968049979089 0.139861018870792 0.142554949142548 0.139704222845336 0.141192579209125 0.136963446245817 0.148688007002689 0.143666846772038 0.146010355041007 0.145263555687355 0.168476451362937 0.15115774636299 0.142300955681132 4 4 - 1064399 1064917 1064655.273 1064363 1066372 - gene protein_coding_gene FALSE TRUE AT4G02420.1 lectin protein kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G02410.1); similar to RLK (RECEPTOR LECTIN KINASE), kinase [Arabidopsis thaliana] (TAIR:AT2G37710.1); similar to receptor kinase Lecrk [Gossypium hirsutum] (GB:AAP47579.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.55914695501731 -6.11707745109058 0.000233153335085937 1 7.59747221711004 17.5338733940205 -0.55914695501731 0.0890568893907251
AT3G06980_at 9.11110533084256 9.07248177366446 8.2412332468788 8.2399882545972 8.87301147290264 8.68722051286798 9.38823287932416 9.23491260675172 8.82389802990789 9.36966962173465 8.5175322882301 9.34892210428213 8.93409091682754 8.76831891900469 9.59104425735605 8.88271574953708 8.75840451763326 8.68444570339386 9.24238514767362 0.120499211528740 0.119759465296925 0.124507837356473 0.122785839949393 0.119954607628556 0.123065561923965 0.123472379398973 0.125940348408387 0.140446184862984 0.116300876224328 0.122094106293352 0.119171349414555 0.115613833501075 0.120880214463367 0.119703882586928 0.124306825949862 0.125089524673992 0.127851321264 0.119868269023498 3 3 + 2203759 2204637 2204306.909 2201473 2204839 + gene protein_coding_gene FALSE TRUE AT3G06980.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 50 (EC 3.6.1.-) (RH50) [Arabidopsis Thaliana] (GB:Q8GUG7;GB:Q9M901); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G09730.1); similar to unnamed protein product [Homo sapiens] (GB:BAD18438.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.450476534286516 -6.11486240775246 0.000233745402307778 1 7.5954292963659 17.8965242131313 -0.450476534286516 0.0422192082646095
AT1G07750_at 8.26588563048629 8.30178356890326 8.55578140161535 8.63004291140418 8.65293548726631 8.5527211393368 8.0758943668606 8.04332466678016 7.55853234803809 7.3184472230872 7.64472544482722 7.6430666231412 7.9264235694035 8.06765262406946 7.77527350286297 7.30966023411044 7.67748272047764 7.92404812259324 7.0906916545587 0.189494602923340 0.191186188940069 0.199268209317001 0.193960859346006 0.195137136658865 0.206972834323327 0.193119238729946 0.193431607564024 0.19728413094085 0.200254249536921 0.201071464406848 0.199891238016432 0.190030787521392 0.191833289508601 0.200647508817496 0.194632258711938 0.224062777946834 0.193190577535627 0.194367459733911 1 1 - 2404317 2404906 2404588.182 2404034 2405940 - gene protein_coding_gene FALSE TRUE AT1G07750.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G28680.1); similar to Os05g0116000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054469.1); similar to legumin-like protein [Zea mays] (GB:AAO63267.1); contains InterPro domain 11-S plant seed storage protein; (InterPro:IPR006044); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.4248163533029 6.11030440908038 0.00023496891821962 1 7.59122299980653 15.9190954867885 0.4248163533029 0.0231577498501667
AT4G02350_at 6.51416122961237 7.23549822940172 6.25820422969664 6.52714971933489 6.61956643971753 6.58170620683131 5.61669627969672 5.4381224548334 6.52425560841412 5.61594075188946 7.57093138643066 7.80928455544488 7.15299715192336 7.32234853878568 7.05906418087685 6.88859363734866 6.69746799372374 6.08047829710453 5.70487993755042 0.238152536427921 0.221929622575456 0.232701802144615 0.224774835486244 0.226067126088149 0.220925088818026 0.221496912161311 0.219845079130843 0.234739104746502 0.231872627626164 0.220304768685249 0.221190885390396 0.218536490839851 0.219093845400513 0.230259431862637 0.221213356821858 0.231413394697086 0.223752940191637 0.234501298524264 4 4 + 1039993 1040428 1040208.091 1038114 1040774 + gene protein_coding_gene FALSE TRUE AT4G02350.1 exocyst complex subunit Sec15-like family protein similar to exocyst complex subunit Sec15-like family protein [Arabidopsis thaliana] (TAIR:AT3G56640.1); similar to PREDICTED: similar to Exocyst complex component Sec15A isoform 3 [Canis familiaris] (GB:XP_866644.1); similar to Os03g0163500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049059.1); similar to Os01g0351300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042985.1); contains InterPro domain Exocyst complex subunit Sec15-like; (InterPro:IPR007225) 0.709912026131251 6.10856459506668 0.000235437790866279 1 7.58961655099131 12.8593903404686 0.709912026131251 0.136919024939976
AT4G27780_at 6.13224984226203 5.95302798229664 6.52510867996055 6.6180631494443 6.77787527180204 6.57604331474919 5.3795583244632 5.11932556380497 5.00863058096786 5.25668604265699 5.11579882494319 5.03482637364408 5.73171147064785 5.26132746269169 5.0480491979684 5.49490751187177 5.58331697120738 4.75974355054577 5.43032059748656 0.224840660296980 0.225977949265386 0.240342025302933 0.225995693171516 0.225753450511695 0.228854061837555 0.225690525382218 0.229996726106499 0.243227883677101 0.232229259848324 0.222902103123895 0.231648800185556 0.233812878152409 0.229923326129330 0.223720844456207 0.224133262235168 0.232564188622455 0.240433014136188 0.226790483297848 4 4 + 13848558 13849585 13849136.909 13847555 13849893 + gene protein_coding_gene FALSE TRUE AT4G27780.1 ACBP2 (ACYL-COA BINDING PROTEIN ACBP 2) Encodes acyl-CoA-binding protein with ankyrin repeats similar to ACBP1 (ACYL-COA BINDING PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G53470.1); similar to membrane acyl-CoA binding protein [Agave americana] (GB:AAT81164.1); contains InterPro domain Acyl-coA-binding protein, ACBP; (InterPro:IPR000582); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.500031636259263 6.10592030952477 0.000236152379768106 1 7.5871740297443 11.3779511381698 0.500031636259263 0.0668488992402979
AT1G61380_at 7.70705091754987 7.78901689263524 7.31406882016377 7.6259117565813 8.01720287469964 7.52856811301395 6.54244402148138 5.88713915377604 6.46695698251926 6.39500501511067 6.70588018618549 7.01342336867593 6.73476167109803 7.26609544490807 6.25006808416475 7.91269409316635 7.4462249514522 6.59593530837343 5.45895656267637 0.208207612602396 0.207066372804606 0.220538610323224 0.205742863714032 0.207752141637922 0.218631495573503 0.209763038286433 0.214987723202201 0.231989696663759 0.211611108500651 0.207843787094338 0.207223179304617 0.207139428178629 0.202297050239279 0.220275387604577 0.202297050239279 0.215601723327775 0.217368692545882 0.212829320360839 1 1|0 -|/ 22650046 22650449 22650180.6 22649737 22653186 - gene protein_coding_gene FALSE TRUE AT1G61380.1 S-locus protein kinase, putative similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT1G11280.4); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G61360.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.761843839910817 6.10142070434398 0.000237373818659690 1 7.58301516523858 13.8502294397069 0.761843839910817 0.152066988025958
AT4G15770_at 7.97765317269925 8.5527126640305 7.96208280220845 7.92909941841418 7.64362272499952 7.45127808381944 8.51411687385483 9.0827518785029 7.00224703364161 7.47127541143492 6.21816495063238 7.01559390295776 6.64989843264175 6.56926186356455 6.71194316791675 7.00908792713381 6.94963471388266 6.28564782489035 7.59152317084938 0.208047486903186 0.215328440586588 0.209232587265126 0.215516364352841 0.220139267392361 0.211439332129065 0.211188521357261 0.216255414073332 0.228197011671740 0.209819606679574 0.213290032677627 0.208892502118053 0.214321375537600 0.211244713876919 0.226309515224278 0.208047486903186 0.217882352993995 0.218500675986708 0.21251314055735 4 4 + 8978397 8978565 8978481 8978009 8978877 + gene protein_coding_gene FALSE TRUE AT4G15770.1 60S ribosome subunit biogenesis protein, putative similar to PREDICTED: similar to MGC83122 protein [Gallus gallus] (GB:XP_414222.1); contains InterPro domain PUA; (InterPro:IPR002478) -0.732074498633803 -6.09016983784852 0.000240458328944773 1 7.5726020100851 15.1547493539467 -0.732074498633803 0.143971033366801
AT1G52670_at 6.79596044314188 7.18194055082084 5.57787481256182 6.05352903151409 5.88688700731464 5.33358647732837 7.69980383767452 7.2352382006417 7.18439233192117 6.77601502171751 6.66581650409342 7.4263751063071 5.88711290826035 6.93237762971271 7.73343336583863 6.32339393214651 5.95758919562503 6.88394907884104 6.4888569714797 0.209636252970194 0.204248618687188 0.211465617158315 0.209848949117844 0.201196596846387 0.224726923959445 0.206322243750599 0.211192493548166 0.220333820614436 0.201166069720773 0.205276274126097 0.202718453506308 0.21257809327621 0.202656493496262 0.214239080298803 0.199773068659470 0.220132101257061 0.202667948355214 0.202469893369137 1 1|0 -|/ 19618818 19620372 19619623.3 19618610 19621240 - gene protein_coding_gene FALSE TRUE AT1G52670.1 biotin/lipoyl attachment domain-containing protein similar to biotin carboxyl carrier protein of acetyl-CoA carboxylase-related [Arabidopsis thaliana] (TAIR:AT3G15690.2); similar to Biotin/lipoyl attachment [Medicago truncatula] (GB:ABD28385.1); contains InterPro domain Hypothetical protein MTH865; (InterPro:IPR009108); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.802715951246515 -6.08989692249163 0.000240533694400882 1 7.57234916168071 13.2419412485293 -0.802715951246515 0.163917601107949
AT3G58990_at 10.5895335872718 10.7790635603668 10.0407560068695 10.0377936736576 10.658653233076 10.3406123414625 10.5469290350367 10.4966023757559 7.92290321474014 9.86003828828587 10.1267358751070 10.3127659021381 10.1882237832158 10.3716865874896 9.64852895015442 10.0872943005760 10.4177479678381 10.2870092063588 8.79487534845363 0.101851002896360 0.0961709239565257 0.099670741396693 0.0976453944116898 0.0972530719862478 0.0996169982941545 0.0987276418900827 0.0984156462935187 0.139687713748834 0.108368133226189 0.103758502604030 0.098458131116621 0.0977875820347574 0.0990569439699284 0.103265495897489 0.0975041804057128 0.102714640018852 0.103925955716917 0.132698194857214 3 3 - 21808505 21809061 21808808 21808035 21809280 - gene protein_coding_gene FALSE TRUE AT3G58990.1 aconitase C-terminal domain-containing protein similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43090.1); similar to putative protein [Oryza sativa] (GB:CAC39061.1); similar to Os02g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047617.1); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573) 0.493574230970897 6.08958379996751 0.000240620194939100 1 7.57205904765901 19.9558786544052 0.493574230970897 0.0646616076634567
AT1G69410_at 10.5945252364734 10.6847859424785 11.3599325585593 11.4480742222498 11.4194085172234 11.0399115417861 11.1520814023540 11.2589130304992 10.7856047229805 11.1033826419057 11.7221242752114 11.1823485323927 11.4257107960707 11.2698010080617 11.4066469640149 11.4064047103304 11.5687128825618 11.3654117523168 10.4881883011603 0.0682100591446814 0.0685330680109893 0.0699806989075788 0.068378781485682 0.069320189530404 0.0746772542014946 0.0686315023686398 0.068434556069713 0.07415670831924 0.0710555901858694 0.0690877479127531 0.067552152738212 0.0698262243788801 0.0694639454348902 0.0682422846008596 0.0683170891606267 0.076964953578297 0.069704065926449 0.0708063387452244 1 1|0 +|/ 26092970 26093785 26093322.556 26092865 26094049 + gene protein_coding_gene FALSE TRUE AT1G69410.1 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative Identical to Eukaryotic translation initiation factor 5A-3 (eIF-5A-3) [Arabidopsis Thaliana] (GB:Q9C505;GB:Q94JU4); similar to EIF-5A (eukaryotic translation initiation factor 5A-1), translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G13950.1); similar to eukaryotic translation initiation factor-5A [Brassica napus] (GB:AAR91929.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Eukaryotic initiation factor 5A hypusine (eIF-5A); (InterPro:IPR001884); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) 0.510129266720612 6.08762909503338 0.00024116095621269 1 7.570247618311 22.2250975583540 0.510129266720612 0.0716343678291904
AT1G62510_at 9.3467696243998 9.80916002924475 8.81989870039345 9.34358133496528 10.1375512387476 10.3188190513786 10.7065324903813 11.1685323676659 10.0410910248177 10.5434003583337 9.46913947112497 8.83650265221253 10.0502998014433 8.94399671273413 9.24120767539513 9.3356006965034 10.5040523507685 10.2757256519343 10.8338659784004 0.119194036550225 0.110636256501111 0.121723828154268 0.118183523598931 0.109488941621964 0.110254222600286 0.114704861402838 0.111725863708391 0.113467826238417 0.114442657830020 0.116926307500971 0.115930333897196 0.114975299164209 0.116302653117674 0.116399110336053 0.109488941621964 0.115725108602959 0.109688329652999 0.112208897792837 1 1 - 23140356 23140672 23140487.818 23140036 23140856 - gene protein_coding_gene FALSE TRUE AT1G62510.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to ELP (EXTENSIN-LIKE PROTEIN), lipid binding [Arabidopsis thaliana] (TAIR:AT1G12090.1); similar to proline-rich SAC51 [Brassica napus] (GB:AAC60566.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.746753103610568 -6.08673111358983 0.000241409825516937 1 7.56941525017397 19.9837813114963 -0.746753103610568 0.148297880737953
AT1G80480_at 9.6823887997789 9.48117721580874 9.69151381867562 9.55575683766053 9.94283978344464 9.67760851011609 9.37275108283192 9.17272334546632 8.64222490528287 8.89337503977757 9.44410846054805 9.30981276917702 9.4177848370612 9.48361844897129 9.43743886105055 9.37394109171712 9.67767077129319 9.62411732841889 8.6943548714569 0.12205426725105 0.120204320805660 0.121607814754743 0.122369337918157 0.120159579834394 0.118064630740762 0.120819159959598 0.115308054580119 0.131374428079683 0.123866978766541 0.119036620196017 0.116772851565262 0.116536658908863 0.120410404062409 0.118178149143297 0.11480886603088 0.129774134339125 0.124166112730573 0.12766015287518 1 1|0 -|/ 30263293 30264124 30263605.6 30262968 30265571 - gene protein_coding_gene FALSE TRUE AT1G80480.1 PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) similar to PRLI-interacting factor L, putative [Arabidopsis thaliana] (TAIR:AT1G15730.1); similar to Cobalamin synthesis protein (ISS) [Ostreococcus tauri] (GB:CAL54572.1); similar to Os02g0800000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048412.1); similar to Os04g0599700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053753.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW, C-terminal; (InterPro:IPR011629); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) 0.508706462679983 6.08346493775643 0.000242317399811372 1 7.56638662770576 18.6792848458239 0.508706462679983 0.0711999094773495
AT3G04640_at 6.59216489774658 6.96770622080393 6.78123225737389 6.8656485051334 6.81681950144338 6.40116337710663 4.17134125147807 4.39138568285049 5.50009769998322 4.10188786053472 4.42356504701810 4.62686266878267 4.6287920675847 5.06658864190173 3.96763504437546 4.17004868892343 4.15606865033685 4.4973615307068 3.66116571904566 0.239166602863955 0.240599184328016 0.250492478533443 0.247055201251568 0.248868103813882 0.248121118514623 0.237085281347588 0.244683148756793 0.237085281347588 0.242624570825643 0.238096458543625 0.239148646158621 0.247417662126790 0.241121928192058 0.253254372691769 0.242569687863640 0.25321792244049 0.241550891189463 0.240043036034069 3 3 - 1261086 1261509 1261286.091 1260912 1261689 - gene protein_coding_gene FALSE TRUE AT3G04640.1|AT3G04640.2|AT3G04640.3 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G07135.1); similar to cold-inducible RNA-binding protein [Ciona intestinalis] (GB:BAA77512.1)|similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G07135.1) 0.603315631488538 6.08016568337474 0.000243237963230079 1 7.56332558305335 10.5550155712295 0.603315631488538 0.105172105570248
AT4G10760_at 6.20368619028976 5.9472131211671 6.13214286201522 5.85061553270996 5.5128953329465 5.47519270094022 6.76512403237464 6.34072776693055 4.96008981350843 5.88305507529088 4.45159973617821 4.88711941637967 4.81096887840633 4.97620721557465 4.8893864252843 4.61848560787493 5.1264635745365 4.67306935636896 5.35997327870602 0.216932022102287 0.20986769182031 0.212515229182954 0.215218580700319 0.210578696531409 0.215408307110143 0.209190253286740 0.217813002000956 0.215387958717455 0.214174170669825 0.212969542542974 0.210310621401253 0.210653967854586 0.213194904672078 0.21497095325599 0.217668040270542 0.217295765421616 0.212448748731466 0.209190253286740 4 4|0 -|/ 6620008 6620716 6620412.222 6619813 6623347 - gene protein_coding_gene FALSE TRUE AT4G10760.1 EMB1706 (EMBRYO DEFECTIVE 1706); S-adenosylmethionine-dependent methyltransferase Identical to Probable N6-adenosine-methyltransferase MT-A70-like (EC 2.1.1.62) (Protein EMBRYO DEFECTIVE 1706) (EMB1706) [Arabidopsis Thaliana] (GB:O82486;GB:Q9M0N2); similar to EMB1691 (EMBRYO DEFECTIVE 1691), S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT4G09980.1); similar to Putative N6-adenosine-methyltransferase MT-A70-like (GB:Q2HVD6); similar to Os02g0672600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047707.1); contains InterPro domain MT-A70; (InterPro:IPR007757) -0.584176516690266 -6.07862283022482 0.000243669767243970 1 7.56189352195975 11.1310506501687 -0.584176516690266 0.0988943056309508
AT3G62950_at 9.99887997936409 10.0801844326473 9.62421383984209 9.78996044537904 10.3493367584000 10.0486718174148 10.5103039759549 10.5736171985112 10.0280538160003 9.515553636506 8.61829713544465 9.16059182804226 9.10934632712578 8.92997806774804 8.61084457919799 9.68222839474348 9.39959759059345 8.82674977211733 9.4889078944900 0.124094911545516 0.125400328812759 0.123682264583354 0.122034023347763 0.124123017935733 0.130929771561652 0.119957919485612 0.123892051615532 0.129431528263624 0.122261566903370 0.129010800956980 0.122998723675618 0.127806339766208 0.120330362584315 0.130259341362418 0.118914701420935 0.123530099975537 0.128289576454643 0.125062519733102 3 3 + 23277329 23277563 23277446.182 23277224 23277909 + gene protein_coding_gene FALSE TRUE AT3G62950.1 glutaredoxin family protein Identical to Glutaredoxin-C11 (AtGrxC11) (GRXC11) [Arabidopsis Thaliana] (GB:Q9LYC6); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G47870.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.486500792574619 -6.07612354515437 0.000244371035012573 1 7.5595728936518 19.4817507197102 -0.486500792574619 0.0620323904382212
AT2G15320_at 5.73443357466294 6.28866511340192 5.29868202774596 5.24173528330015 4.94941810440554 4.50280131329011 6.58849598600818 7.1016363583115 5.37568716063249 5.66596708348615 4.85846507562281 5.56602322746324 5.17651208236322 5.5248139479817 4.8472626686799 6.23826919267049 5.29978753981981 5.69313375173713 5.4211465327657 0.222388101304845 0.206164670525753 0.209211470032515 0.221335558520504 0.211300846329852 0.231856780494899 0.208532116779247 0.208449239336636 0.215594724441099 0.204650016427166 0.204474422035866 0.201975972100636 0.205647729989269 0.213281623795191 0.215713902116124 0.205496185910841 0.212999803494767 0.205391646689653 0.206071916980947 2 2 - 6673647 6674131 6673949.636 6673398 6674786 - gene protein_coding_gene FALSE TRUE AT2G15320.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66330.1); similar to Os02g0647300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047577.1); similar to brassinosteroid receptor [Pisum sativum] (GB:BAC99050.1); similar to Os01g0818700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044633.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.758607699539925 -6.07260892426159 0.000245360937737866 1 7.5563077999586 11.1573003175176 -0.758607699539925 0.152169587372788
AT3G07940_at 5.4140094956386 5.21957411361534 5.77600405803172 5.35718433178079 6.36936293452776 6.09896335630759 6.04758138874189 5.91721659069793 4.97934938902329 6.04543500753543 6.31015234022246 6.15690097657079 6.82612274916701 6.99992556643725 6.48042438308836 6.23946237784997 6.94021368279565 5.8648712770689 5.72941779638338 0.226328294379228 0.225760293794875 0.229126613946214 0.228209455585463 0.229570080792566 0.233977754706577 0.225901921482188 0.225949472705873 0.25029126913443 0.228331405963393 0.230182647972488 0.223418960422200 0.234039275005171 0.228670841177749 0.231913277697580 0.223180442821367 0.227343357998119 0.230157591104786 0.226954336538373 3 3|0 +|/ 2530539 2531328 2530858.889 2529210 2531539 + gene protein_coding_gene FALSE TRUE AT3G07940.1 zinc finger and C2 domain protein, putative similar to ZAC (ARF-GAP DOMAIN 12), ARF GTPase activator [Arabidopsis thaliana] (TAIR:AT4G21160.4); similar to Os05g0382000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055403.1); similar to Os01g0951100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045411.1); similar to putative zinc finger and C2 domain protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35631.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.57165418891227 6.05803757371763 0.000249512127176353 1 7.54274964191243 11.8059836503997 0.57165418891227 0.0953099237838507
AT4G24750_at 8.80354766954936 8.76452757562107 8.06586607383427 7.98133131981925 8.95062347326565 8.4638385156552 9.22465890900394 9.05409454103977 9.4245492993057 9.32606949423566 8.91990006463375 9.23973570597062 8.5602418383345 8.68610600647035 9.31115503204493 8.73908995474382 8.33731962948895 8.7569304009831 9.26713220843827 0.14049378871348 0.138404047100150 0.160247529420911 0.156968988201671 0.142951254404454 0.151532821345174 0.155954203390941 0.141490921216251 0.150899986363178 0.146948058373029 0.139149467686094 0.137011858974034 0.147430742663927 0.141449003022705 0.1417787074495 0.138400446134294 0.152217821501087 0.151027932933933 0.142622964132405 4 4|0 -|/ 12758474 12760232 12759597.286 12758224 12760918 - gene protein_coding_gene FALSE TRUE AT4G24750.1 similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08920.1); similar to Os09g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062759.1); similar to Os03g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049793.1); similar to Os02g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047318.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.558366416534697 -6.0576219979672 0.000249631642534382 1 7.54236245798272 17.7425910912620 -0.558366416534697 0.0907045002705927
AT4G26900_at 7.10528508876625 6.78184022384108 6.03593848165229 5.61565603421606 6.4983613853627 5.99852237341528 7.41706061065527 6.77907234836166 7.2354894081764 7.23328252539175 6.45735780023861 7.41126467752687 5.94600701634783 6.46763027547814 6.95839689621452 6.36575425120106 6.53399294052311 6.53510310506002 7.20154941205337 0.222128384433748 0.219489741147188 0.221530224475149 0.219675340169923 0.218726110332638 0.222943011638873 0.225684191120599 0.216329131449603 0.217726050608476 0.216639604115543 0.218745837252454 0.217164443043205 0.217993574891916 0.223551536525130 0.221196543154940 0.216329131449603 0.241318032888102 0.228369118723735 0.216329131449603 4 4|0 +|/ 13518020 13519426 13518895.125 13515484 13519861 + gene protein_coding_gene FALSE TRUE AT4G26900.1 AT-HF (Arabidopsis thaliana HisF protein) encodes a glutamine amidotransferase and cyclase, catalyzes the fifth and sixth steps of the histidine biosynthetic pathway Identical to Imidazole glycerol phosphate synthase hisHF, chloroplast precursor (IGP synthase) (ImGP synthase) (IGPS) [Includes: Glutamine amidotransferase (EC 2.4.2.-); Cyclase (EC 4.1.3.-)] [Arabidopsis Thaliana] (GB:Q9SZ30;GB:O80330); similar to Os03g0256400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049598.1); similar to Glutamine amidotransferase/cyclase (ISS) [Ostreococcus tauri] (GB:CAL55613.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain Histidine biosynthesis, HisF; (InterPro:IPR004651); contains InterPro domain Histidine biosynthesis; (InterPro:IPR006062); contains InterPro domain Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; (InterPro:IPR010139); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) -0.811348538730607 -6.05451300875343 0.000250527748672397 1 7.53946498422413 13.4329064777160 -0.811348538730607 0.167615031513047
AT2G30490_at 8.75197863512568 8.8732286262796 8.8540061164428 8.94471137297275 7.9160376481331 8.09588682037656 9.2117087877265 9.28641891965546 8.61552244650068 9.0612666076054 8.59657709726318 8.8898987351534 8.47508525701825 8.4262173911803 9.00962782886779 8.2602435086053 8.39787380476273 8.66705994373215 9.04021164060489 0.131810699035810 0.130677041149458 0.134196882979382 0.130359857579832 0.132010328759410 0.130852819852115 0.132412077567633 0.130469261905389 0.138784774582517 0.131959743267729 0.138068167628495 0.131919622734340 0.134745695829643 0.138670260552119 0.132989601895978 0.138210211961001 0.129448168620849 0.133189221808991 0.131494029357702 2 2 - 13000973 13001471 13001242.909 13000740 13002847 - gene protein_coding_gene FALSE TRUE AT2G30490.1 ATC4H (CINNAMATE-4-HYDROXYLASE) Encodes a cinnamate-4-hydroxylase. Identical to Trans-cinnamate 4-monooxygenase (EC 1.14.13.11) (Cinnamic acid 4- hydroxylase) (CA4H) (C4H) (P450C4H) (Cytochrome P450 73) (CYP73A5) [Arabidopsis Thaliana] (GB:P92994;GB:O04995;GB:O49834;GB:P92993); similar to CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3), p-coumarate 3-hydroxylase [Arabidopsis thaliana] (TAIR:AT2G40890.1); similar to cinnamic acid 4-hydroxylase [Solanum tuberosum] (GB:ABC69046.1); similar to cinnamic acid 4-hydroxylase [Arnebia euchroma] (GB:ABD77493.1); similar to Cinnamic acid 4-hydroxylase [Verbena x hybrida] (GB:BAE72875.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.446758602564804 -6.05376375002673 0.000250744234704534 1 7.53876646579884 17.489742037869 -0.446758602564804 0.0426909870340845
AT3G07930_at 5.58376529141904 5.56363944659303 6.17041642262529 6.3419132283605 6.6892789252064 6.24881342233515 5.89086434503956 5.38746728794849 4.47775643590348 4.45891664593424 5.0341423860257 4.85977459337937 5.25168703901302 4.77393558692002 4.4040581927686 4.82946213926537 5.52582642358892 5.00672415045704 4.3391060078612 0.232829946418070 0.237139590241563 0.23445746967665 0.227037126651732 0.224535471433649 0.232597112697231 0.225021201338697 0.222113785103669 0.232727931670086 0.233020865310180 0.22088879191045 0.227017610838350 0.224522622667959 0.252371627365133 0.230785806734584 0.226351193578412 0.236581801364857 0.236214509414091 0.233775689714450 3 3 + 2527270 2527707 2527529.455 2526624 2528639 + gene protein_coding_gene FALSE TRUE AT3G07930.1|AT3G07930.2|AT3G07930.3 HhH-GPD base excision DNA repair family protein similar to Os09g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062549.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257)|similar to Os09g0101100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062549.1); similar to PREDICTED: similar to Methyl-CpG binding domain protein 4 [Strongylocentrotus purpuratus] (GB:XP_783908.2); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.645806512121375 6.05260045694725 0.000251080755442300 1 7.53768177126024 10.6775003014377 0.645806512121375 0.119549921947092
AT2G19540_at 8.44592172539772 8.30051400271047 8.21431890015189 8.09235523950901 8.09523998159682 7.79669340123933 8.60161392228343 8.51590559293421 7.08489454475196 7.3758444679343 6.47279178444951 6.69585671281835 6.74226505015306 6.8530900315396 6.99541521767931 7.1396525353386 7.08980018182588 6.74867443939227 7.73729814588377 0.191290144353278 0.188224892385017 0.187439483177348 0.189135766175104 0.18711989705743 0.19280231496095 0.186775360138178 0.188053965791854 0.207599703721250 0.193883852463988 0.197724250848682 0.186775360138178 0.192949122232770 0.195938506858514 0.192189003535699 0.186775360138178 0.187785346921364 0.193297326607573 0.191775191123511 2 2|0 +|/ 8470534 8471389 8470910.9 8468839 8471616 + gene protein_coding_gene FALSE TRUE AT2G19540.1 transducin family protein / WD-40 repeat family protein similar to MSI2 (NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2) [Arabidopsis thaliana] (TAIR:AT2G16780.1); similar to WD-40 repeat protein-like protein [Solanum tuberosum] (GB:ABB72800.1); similar to Os11g0134500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065677.1); similar to immature pollen 1 [Oryza sativa (japonica cultivar-group)] (GB:ABF38930.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.486744702790481 -6.05227234748597 0.000251175761328785 1 7.53737579100484 15.3785898275643 -0.486744702790481 0.0629915455020935
AT3G62910_at 8.83214582085434 8.6707955710093 7.73641090869108 7.39133767709662 8.29172032147093 8.11564687609712 8.71596164920506 8.38067658862632 8.36677578070113 8.79591438150959 7.92451087544175 8.87123641249457 8.04680802735577 8.14661776086045 9.03579292902902 8.42916873483684 8.13602328606087 7.55576842000166 8.72832839512783 0.160429957423412 0.160429957423412 0.162071017851065 0.169252611478131 0.161880391733819 0.172657552532906 0.167763103477541 0.171970790448741 0.176124226811931 0.160806500905301 0.17479714919108 0.164469405601629 0.164921298591789 0.165962746501463 0.162925466888572 0.167285770728416 0.176278035693188 0.166169527950782 0.162957100364042 3 3|0 -|/ 23268657 23269697 23269270.778 23268529 23271402 - gene protein_coding_gene FALSE TRUE AT3G62910.1 APG3 (ALBINO AND PALE GREEN); translation release factor Isolated in a screen for chloroplast development mutants. Pale green, albino seedlings arrest early in seedling development. similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT2G47020.1); similar to Os11g0657100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068394.1); similar to peptide chain release factor 1 [Trichodesmium erythraeum IMS101] (GB:YP_722610.1); contains InterPro domain PCRF; (InterPro:IPR005139); contains InterPro domain Protein chain release factor, RF-1/RF-2; (InterPro:IPR012086); contains InterPro domain Peptide chain release factor 1; (InterPro:IPR004373); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352) -0.564107337468774 -6.05019479757071 0.000251778242294657 1 7.53543795512429 16.7161270890678 -0.564107337468774 0.0929558690021068
AT4G38630_at 9.49425639820963 9.49929986084767 9.85050839770818 9.89287673429683 9.69004564737936 9.82009326320275 9.21696837764424 9.24612048675738 9.07303417697497 8.87157575615416 9.4910612424543 9.22884959399718 9.35780949763171 9.21492444688045 9.23418211138092 9.25207646934057 9.2721617701053 9.1792761510186 8.7094773820473 0.0781296876369403 0.0756327331276698 0.0785323929168381 0.0808086162609616 0.0764466174652682 0.0753251196274047 0.0743557992137683 0.0825687398250834 0.0805687795014898 0.0803644081289105 0.0779141057743025 0.0771105304509076 0.0786907333413151 0.0819989744166846 0.0789361409846872 0.0749722748769622 0.081918493297577 0.0772632834850652 0.0825930182235961 4 4|0 -|/ 18057502 18058247 18057993.111 18057124 18059534 - gene protein_coding_gene FALSE TRUE AT4G38630.1 AT-MCB1 (MULTIUBIQUITIN CHAIN BINDING PROTEIN 1) Arabidopsis thaliana multiubiquitin-chain-binding protein Identical to 26S proteasome non-ATPase regulatory subunit 4 (26S proteasome regulatory subunit S5A) (Multiubiquitin chain-binding protein) (MBP1) [Arabidopsis Thaliana] (GB:P55034); similar to 26S proteasome regulatory subunit S5A [Mesembryanthemum crystallinum] (GB:AAC19402.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.421658309203852 6.04994388177079 0.000251851113946241 1 7.53520386586424 18.6705153617941 0.421658309203852 0.0242169831903540
AT3G60245_at 11.7494606702582 11.7969902701384 11.3764095470570 11.3253185264073 11.2222822218088 10.9294177160279 11.9745781686535 11.9971238423864 11.6940918195247 11.7887333979942 11.5075479908104 11.9734676511304 11.2830787574908 11.2985195174049 12.0413593716484 11.1520354572843 11.0145084678348 11.2074639039848 11.6034458988745 0.06701122814601 0.068424869523133 0.0694206450606772 0.0709172419515177 0.0697164217443649 0.0693367963851467 0.0697859490019201 0.0687561131657025 0.0679875566504748 0.0668184177119591 0.071970337860935 0.0669392565127281 0.0665419612200803 0.07101977177868 0.07089482758119 0.066502655049452 0.0721450521536347 0.0680192837327506 0.066502655049452 3 3|0 +|/ 22279998 22280697 22280432.444 22279721 22280981 + gene protein_coding_gene FALSE TRUE AT3G60245.1 60S ribosomal protein L37a (RPL37aC) Identical to 60S ribosomal protein L37a-2 (RPL37AC) [Arabidopsis Thaliana] (GB:Q8RXU5;GB:Q9LY39); similar to 60S ribosomal protein L37a (RPL37aB) [Arabidopsis thaliana] (TAIR:AT3G10950.1); similar to 60S ribosomal protein L37a (GB:P43209); contains InterPro domain Ribosomal L37ae protein; (InterPro:IPR002674) -0.463428650399856 -6.04448816818284 0.000253441304526774 1 7.53011148822865 23.1115332929237 -0.463428650399856 0.0522462552528323
AT3G06450_at 8.01453055178307 7.9916948070769 7.96461133564112 7.86057879248573 7.4079217434975 6.86192669861272 5.05591465450144 4.63599468503234 6.07446107701553 5.51100554598867 5.97514620176125 6.28564200089221 5.10725573443291 6.29175617760284 5.79662774988202 5.54625739360042 5.55717676590379 5.88578433327414 5.23983300392211 0.222741117733735 0.224140124729562 0.224561524035351 0.227716041058620 0.229095343896724 0.228659866660003 0.227650235168356 0.237062296447619 0.231347096007495 0.237356507859298 0.222562766448346 0.222811174837127 0.233776669455733 0.227791774619442 0.222246723105824 0.221651969386896 0.242139763170002 0.227222216022596 0.229462651911300 3 3 - 1976130 1976736 1976494.455 1975965 1980042 - gene protein_coding_gene FALSE TRUE AT3G06450.1 anion exchange family protein Identical to Boron transporter-like protein 1 [Arabidopsis Thaliana] (GB:Q93Z13;GB:Q9SQU8); similar to BOR1 (REQUIRES HIGH BORON 1), anion exchanger [Arabidopsis thaliana] (TAIR:AT2G47160.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G62270.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:ABD78951.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) 0.648249276827044 6.04320504935719 0.000253816894126696 1 7.52891311965793 12.6812161604009 0.648249276827044 0.120616445371281
AT2G45670_at 7.64810614007465 7.84403888006312 7.84321696863079 8.0628877024887 8.67819996391517 8.3157348908659 8.28984088112377 8.65307679608472 6.04230720840972 6.21518589959658 7.73962999533124 6.9557383348271 8.24840791141013 7.34429986696043 7.32723332374316 7.8770562755535 7.40675935696845 5.91348429839575 6.6018252774348 0.206110073174441 0.198039143326417 0.197560089486302 0.201803518446947 0.197560089486302 0.204591220189784 0.200234420110156 0.197560089486302 0.235838290108735 0.203625837774250 0.197560089486302 0.197560089486302 0.205159132661605 0.225501891237473 0.207349210693058 0.198161509947005 0.217190761981001 0.251124508935051 0.200001665618421 2 2|0 -|/ 18824154 18825157 18824696.1 18821783 18825537 - gene protein_coding_gene FALSE TRUE AT2G45670.1|AT2G45670.2 calcineurin B subunit-related similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G80950.1); similar to Os06g0712300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058556.1); similar to JD1 [Nicotiana tabacum] (GB:AAG49320.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|similar to Os06g0712300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058556.1); similar to JD1 [Nicotiana tabacum] (GB:AAG49320.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) 0.590690457861797 6.03829223469025 0.000255260601739728 1 7.52432232465851 14.9858955940121 0.590690457861797 0.102375565775155
AT2G22230_at 6.23557404596355 6.32485911956082 4.57594971883990 4.32686860023298 4.54076822536162 4.78214559465439 6.86022426926623 7.44293800399631 6.14037973456808 6.43285518169445 7.2164352099993 7.72009008972308 6.44777514377586 7.1517290510095 8.25927773000584 6.3665223373845 5.95129031045563 6.99493099106676 5.82885274355176 0.227968940623898 0.22279055439674 0.230114171691583 0.232091801624179 0.2253212016917 0.241102289997018 0.220715182282212 0.228519759063611 0.231202569517184 0.224505322950191 0.224507889679666 0.227585041125105 0.225989018620369 0.222789614241231 0.227304303171379 0.220715182282212 0.239576502611788 0.224161508588561 0.222183934820407 2 2|0 +|/ 9457238 9458483 9457791.5 9457064 9458702 + gene protein_coding_gene FALSE TRUE AT2G22230.1 beta-hydroxyacyl-ACP dehydratase, putative similar to beta-hydroxyacyl-ACP dehydratase, putative [Arabidopsis thaliana] (TAIR:AT5G10160.1); similar to 4D11_17 [Brassica rapa subsp. pekinensis] (GB:AAZ67531.1); contains InterPro domain Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; (InterPro:IPR010084); contains InterPro domain Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; (InterPro:IPR013114) -0.639994343467523 -6.03377134813922 0.000256597086525694 1 7.52009430187252 12.2099337361673 -0.639994343467523 0.118366298180145
AT2G30060_at 8.87255658666 9.0684147635039 9.37559328174244 9.49684698583111 9.31169335840038 9.02656865555406 9.46221796526967 9.22797474968916 8.35927478689018 8.39336513185905 9.623835581187 9.43073140282697 9.3634679899716 9.26024487119116 9.23038178681581 9.3545253509887 9.15793667740998 9.11476150402742 8.54475149631499 0.128022237547199 0.125093113966775 0.126447035823731 0.125981992136885 0.126266082851018 0.129562865397152 0.129255573186975 0.130598181186291 0.139989034764339 0.140631432057476 0.123190672822256 0.123190672822256 0.130118842423355 0.142875737961289 0.128232323241153 0.125499839149925 0.141666354164698 0.129562259566951 0.143128933618565 2 2|0 +|/ 12834200 12835601 12834779.3 12833992 12835996 + gene protein_coding_gene FALSE TRUE AT2G30060.1 Ran-binding protein 1b (RanBP1b) Identical to Ran-binding protein 1 homolog b (RANBP1B) [Arabidopsis Thaliana] (GB:Q8RWG8;GB:O04150;GB:O64739); similar to SIRANBP (Ran-binding protein 1a), Ran GTPase binding [Arabidopsis thaliana] (TAIR:AT1G07140.1); similar to unknown [Brassica rapa] (GB:ABB97039.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.514703197316123 6.03362093967826 0.000256641682516937 1 7.51995357976749 18.1049580186182 0.514703197316123 0.0752795478346597
AT2G24520_at 5.66376402931129 5.3140581439038 4.36989486293924 4.18540650086516 5.31862607357411 4.96806182792947 4.99181896378244 4.5845883563098 5.18416404188691 5.25613274973395 4.50263460697533 4.86562074100593 4.36577077035042 4.54744883672589 4.26373264876722 4.85370376442935 4.47185317540146 4.59048094199782 5.73249682662454 0.248795360669078 0.244594989894096 0.241199556897528 0.238602190457936 0.24119187611349 0.23887529558871 0.252044720011647 0.239694492159677 0.242723439282382 0.236491229752065 0.238752300109484 0.236491229752065 0.237661734493376 0.237294264880526 0.237384872663961 0.236491229752065 0.257069663959306 0.241341403626869 0.242724113991067 2 2|0 +|/ 10425848 10426781 10426195.333 10422512 10426863 + gene protein_coding_gene FALSE TRUE AT2G24520.1 AHA5 (ARABIDOPSIS H(+)-ATPASE 5); ATPase Identical to ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5) (AHA5) [Arabidopsis Thaliana] (GB:Q9SJB3); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to plasma membrane H+ ATPase [Prunus persica] (GB:CAB69823.1); similar to H(+)-transporting ATPase [Phaseolus vulgaris] (GB:CAA59799.1); similar to ATPase 5, plasma membrane-type (Proton pump 5) (GB:Q9SJB3); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.63066778868748 -6.03355692829091 0.000256660664419014 1 7.51989368961896 9.89882079072115 -0.63066778868748 0.115449929738094
AT4G37080_at 6.81471800633496 6.91266294133221 5.92908777867097 5.99140053399107 7.12768431353311 6.6715256244919 8.14095736894608 7.89597695582642 8.48989091516487 8.21356836258712 8.89116150457663 8.65576921342015 8.27096137978142 8.50010141403655 8.37823103857177 7.88137057118723 7.05296502872171 8.10555167597706 8.26572440066803 0.169215174863725 0.166583938783081 0.162210928473628 0.174410276383215 0.164895758547021 0.168119016592756 0.157093245000014 0.159008739472009 0.157687722389558 0.165328832605137 0.154686015790366 0.155071131355885 0.160811267839641 0.160574579224464 0.159791341078391 0.169257974452733 0.174510638229512 0.154012136859710 0.162763926473718 4 4|0 +|/ 17475876 17476666 17476253.1 17473266 17476946 + gene protein_coding_gene FALSE TRUE AT4G37080.1|AT4G37080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42690.2); similar to Os03g0859900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051971.1); similar to Os09g0463300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063405.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44737.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42690.2); similar to Os09g0463300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063405.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44737.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.558600751647047 -6.02561163449367 0.000259028744187153 1 7.51245475955591 15.2055392926029 -0.558600751647047 0.0918286558982113
AT1G31830_at 7.14008959854495 7.5348525458731 6.72486878501102 7.01554577788906 7.17184559667757 7.66474575555842 5.44347406287812 5.35863647542685 4.60897529791042 4.75990356157489 5.09933733060674 5.32129823358985 5.54466230341178 5.54866496165186 4.92751547422897 4.83221032033009 5.35647759192071 5.33395988167577 4.8036922244314 0.270198262917932 0.250059907631837 0.276606628000032 0.258168966185974 0.256201376219547 0.260401522325271 0.255599893534091 0.248958349105238 0.271981458317714 0.270904546753759 0.253903377603820 0.248958349105238 0.255242514622883 0.248967281178463 0.262244329968084 0.250850868633755 0.258850337190502 0.251824182735723 0.257136775256256 1 1 - 11418883 11419307 11419071.091 11418606 11420818 - gene protein_coding_gene FALSE TRUE AT1G31830.1|AT1G31830.2 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31820.1); similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT5G05630.1); similar to putative amino acid permease [Oryza sativa (japonica cultivar-group)] (GB:AAR10855.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97257.1); similar to Os03g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050538.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.648156854487332 6.02485250213093 0.000259256251804591 1 7.51174346985392 11.7416103864737 0.648156854487332 0.121197444998437
AT2G46930_at 5.64354786598099 6.20839468540024 3.91428004821547 4.27705432272824 5.26252322832796 5.64805583073718 6.64711526788338 6.8220837117974 6.2513975434129 7.16504040470741 6.81639838406307 7.30010958702285 6.57194749142379 6.98095909785659 6.99754999382701 6.42273437717387 6.56551446370048 7.15008895816619 6.67519734253678 0.1918639422003 0.183879719030805 0.183630147719655 0.196172601805738 0.188157945921303 0.180067841602573 0.183639020064221 0.182842301647483 0.200187275636087 0.178315560965646 0.178575124367609 0.178315560965646 0.184624737205035 0.183100637133613 0.185401912927831 0.178315560965646 0.185351362265126 0.181187026304953 0.178604617223592 2 2|0 +|/ 19292271 19293098 19292738.889 19290588 19293416 + gene protein_coding_gene FALSE TRUE AT2G46930.1 pectinacetylesterase, putative similar to pectinacetylesterase family protein [Arabidopsis thaliana] (TAIR:AT3G62060.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34283.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.700677997330714 -6.01665077756567 0.000261728268516633 1 7.50405265467344 12.3268191489872 -0.700677997330714 0.137347682174826
AT4G39940_at 11.2232860026578 11.1615485656097 10.7944754524392 10.8498792072485 11.0052905108267 10.7784165996674 11.1896697928856 11.0419580315551 8.71722108881838 10.4519964486055 10.7705074116007 10.6783539105297 10.6964947574905 10.9640574367045 10.1853263163480 10.6931583734396 11.0654772471577 11.0310974613494 9.49099065877957 0.0898495932534003 0.0881293490665924 0.0871156880970437 0.0879840412976554 0.088105265635478 0.0890090848491655 0.0890251083477009 0.0879964361494495 0.110035518353884 0.0871156880970437 0.0963035144062625 0.088204018450521 0.0890138505787536 0.0903249064117054 0.0935725831761104 0.0871156880970437 0.0902954105018195 0.0904910471003264 0.0940338300138952 4 4|0 +|/ 18520270 18521226 18520747.7 18519711 18521562 + gene protein_coding_gene FALSE TRUE AT4G39940.1 AKN2 (APS-KINASE 2); ATP binding / kinase/ transferase, transferring phosphorus-containing groups adenosine-5'-phosphosulfate-kinase (akn2) mRNA, complete Identical to Adenylyl-sulfate kinase 2, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'-phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase) (AKN2) [Arabidopsis Thaliana] (GB:O49196); similar to APK (APS KINASE), ATP binding / kinase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] (TAIR:AT2G14750.1); similar to Adenylylsulfate kinase [Medicago truncatula] (GB:ABE85872.1); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) 0.455028113314035 6.0155575444062 0.000262059716797359 1 7.50302669412301 21.1625464435589 0.455028113314035 0.0489997254077659
AT2G20670_at 6.80654858407123 7.48330824589048 6.75246534377516 6.39794874042831 8.90891710086017 8.76302977821244 9.18917598271786 8.91364666888903 8.95464232214392 8.71689622376663 7.86884601642791 8.39302610974262 7.68096903007335 8.2548020713173 7.51426111356084 6.65149412453446 7.76473734830293 7.2497181443161 8.47985649670908 0.243721301960841 0.226583767757964 0.227286972705988 0.224695966951451 0.220611286186746 0.225838464298296 0.223567474428151 0.220327788127137 0.226844724039167 0.227674752150484 0.220513289620101 0.220139689602794 0.230830805441988 0.226403614408096 0.231835887277447 0.230613311870294 0.229115042471529 0.224800691434318 0.222538142339115 2 2 - 8919274 8920114 8919632.909 8918941 8920615 - gene protein_coding_gene FALSE TRUE AT2G20670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32480.1); similar to Protein of unknown function DUF506, plant [Medicago truncatula] (GB:ABD32359.1); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -0.71873978283095 -6.012679029715 0.000262934630897161 1 7.50032437798115 16.0965617684344 -0.71873978283095 0.142797382673895
AT1G80000_at 5.06007442612774 5.15825252381997 4.99070808008455 4.65092998384549 5.0338813866912 4.97320225708023 4.49062753320338 4.51178403034786 4.6941930570619 4.17306308079862 5.06210954765049 5.26622260459433 5.22228008804812 5.6880427601806 5.01954902759983 5.62183360993536 5.06621699201078 4.8315039313817 4.2296100944104 0.231987930862619 0.229126767263655 0.236068327892097 0.230964824327403 0.229126767263655 0.233884595374862 0.229126767263655 0.231826337887745 0.233828054182223 0.230680476199245 0.229932524124822 0.232091622374136 0.231394744966432 0.235184696587547 0.237287321971001 0.234488611628486 0.237277380083648 0.235149403044727 0.245559325774021 1 1|0 +|/ 30099868 30100719 30100223.375 30097817 30102058 + gene protein_coding_gene FALSE TRUE AT1G80000.1|AT1G80000.2 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G15280.2); similar to Os01g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043467.1); similar to glycine-rich protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52900.1) 0.481796770651068 6.01251053033269 0.000262985944709157 1 7.5001661508487 9.65260347644945 0.481796770651068 0.0622077112980773
AT3G49530_at 7.46554151539209 7.52955686537872 7.96589387880293 7.82524544666945 7.65851843532821 7.49154201057924 6.59366362427922 6.17794976446974 6.13630428910077 5.9570556629285 6.50993121450777 6.48991828556595 6.2597107169419 6.3512085436183 6.48848604303606 6.09317454198057 6.3004619223612 5.8315960801973 5.97919205496728 0.196418526110323 0.195995785814840 0.194439210600800 0.197333028693896 0.197248508352778 0.201433197994874 0.193631865195968 0.197229032940413 0.211355027440597 0.201028325013646 0.197897238269335 0.195333215556136 0.203517268213133 0.198066946770922 0.194001880758997 0.193631865195968 0.196712382124952 0.196679501117186 0.199138667699666 3 3|0 -|/ 18373633 18374313 18373948.444 18373428 18375898 - gene protein_coding_gene FALSE TRUE AT3G49530.1 ANAC062 (Arabidopsis NAC domain containing protein 62); transcription factor similar to TIP (TCV-INTERACTING PROTEIN), transcription factor [Arabidopsis thaliana] (TAIR:AT5G24590.2); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.529999458329482 6.00828402529935 0.000264276654778382 1 7.49619579142305 13.4958614030416 0.529999458329482 0.0820102173954617
AT1G56430_at 5.56367611687833 6.0782544017569 6.73516422330702 6.86326866644752 7.847926476027 7.55736316403892 7.88263649011286 8.44756978807967 5.37490689714849 7.34467939239651 7.36760991190691 7.40824400016448 8.46101972745122 8.3468352567133 7.01283220693996 7.79708597958018 8.23193895994395 6.49327131042368 6.65641302595635 0.211443286366202 0.212149040974052 0.214431149368345 0.209364057932453 0.213692660201834 0.215203713069963 0.2192428200343 0.214335139723987 0.233163206458735 0.209364057932453 0.212311891331922 0.209364057932453 0.213427511113733 0.221688747999623 0.221929186527181 0.209364057932453 0.219103470142443 0.22221663051191 0.211741113842988 1 1 + 21141121 21141574 21141349 21140609 21141752 + gene protein_coding_gene FALSE TRUE AT1G56430.1 nicotianamine synthase, putative Identical to Probable nicotianamine synthase 4 (EC 2.5.1.43) (S-adenosyl-L- methionine:S-adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 4) (NAS4) [Arabidopsis Thaliana] (GB:Q9C7X5); similar to nicotianamine synthase, putative [Arabidopsis thaliana] (TAIR:AT1G09240.1); similar to nicotianamine synthase [Thlaspi caerulescens] (GB:CAC82913.1); contains InterPro domain Nicotianamine synthase; (InterPro:IPR004298) 0.719542331944093 6.00773202435603 0.000264445739091676 1 7.4956770290384 14.1712429696515 0.719542331944093 0.143205032518480
AT2G43420_at 6.02066362474844 6.44237740768292 6.54999982193076 6.61489134368196 7.34008699131358 6.30775209846012 5.27618442334907 5.30921621797441 5.13791772181929 4.78462977866691 5.9325941266892 6.1920596729886 5.61550136791214 5.65444936251491 5.29469746893287 5.97921414608297 5.83422089353813 6.11612992118636 4.99211507582277 0.227941789315285 0.207962693573895 0.227864635420439 0.209708166933014 0.216500037748278 0.223828812929525 0.215520221203031 0.217943676604076 0.21814369933339 0.213177414674135 0.214225824055631 0.218749521615869 0.212414115459145 0.214494356770066 0.21125346703341 0.213900644052702 0.242664714159489 0.228555460861228 0.214099603525831 2 2|0 -|/ 18038679 18039376 18039085.3 18038345 18042175 - gene protein_coding_gene FALSE TRUE AT2G43420.1 3-beta hydroxysteroid dehydrogenase/isomerase family protein similar to AT3BETAHSD/D2 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 2), 3-beta-hydroxy-delta5-steroid dehydrogenase/ sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT2G26260.1); similar to Os09g0516500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063672.1); similar to Os03g0405000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050327.1); similar to putative 3-beta hydroxysteroid dehydrogenase/isomerase [Oryza sativa (japonica cultivar-group)] (GB:AAP50919.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.898438161642774 6.0043178970057 0.000265494162500188 1 7.4924673769543 11.6321027721845 0.898438161642774 0.193392737348196
AT4G08685_at 7.07628742348055 7.53194792528714 5.41191007513172 5.84953419598234 5.98801626498277 6.31173563747161 8.01830483385744 8.53455401149792 8.05045879240791 8.4174151448933 8.88785529038162 9.37643049042388 8.71976739355199 8.82729059778759 9.2821861820909 8.57012401796313 7.44083711910912 8.99879361883494 8.61479547752432 0.183818783699130 0.173361104283685 0.222041538899709 0.190991435438736 0.198031441909634 0.189082960523049 0.185456648513052 0.173361104283685 0.187423074229206 0.178105508747618 0.175957202849134 0.174223605645912 0.178075457982398 0.182783302240787 0.178450630220002 0.176007424851796 0.189508592462267 0.174300888172046 0.174454135384136 4 4|0 +|/ 5550566 5551197 5550873.9 5550426 5551367 + gene protein_coding_gene FALSE TRUE AT4G08685.1 SAH7 Encodes a protein, expressed in leaves, with similarity to pollen allergens. similar to pollen Ole e 1 allergen and extensin family protein [Arabidopsis thaliana] (TAIR:AT1G78040.2); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:ABC86745.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.748976860656298 -6.00305284950293 0.00026588379346358 1 7.49127761102413 15.4021864928163 -0.748976860656298 0.151899100542801
AT4G33540_at 8.19928402603303 7.91554187591813 9.11352968997226 9.10478450325911 9.08392878386422 7.54698934601053 7.4418203852914 6.84482085369372 4.97267135691942 6.04061942788853 7.1569672942156 6.85686808081859 6.76973015584659 7.35023306168228 6.61018944100057 6.9977272841546 7.26147966579643 6.83653202829606 5.66552215488111 0.220099115226919 0.213036340247768 0.218379872696841 0.216450967567244 0.21961129131207 0.229916866510413 0.215270834227406 0.218007084593501 0.24182360469443 0.223846248430243 0.213036340247768 0.217733195233682 0.214912523380727 0.228843206878129 0.223269591660159 0.213249745655761 0.229638723133970 0.222426817348061 0.215581823214489 4 4|0 +|/ 16132567 16133646 16133200.125 16130827 16133963 + gene protein_coding_gene FALSE TRUE AT4G33540.1 metallo-beta-lactamase family protein similar to Os02g0829500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048607.1); similar to hypothetical protein all1228 [Nostoc sp. PCC 7120] (GB:NP_485271.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 1.26615142939456 6.00208965888639 0.000266180873343941 1 7.49037156353451 14.4261225278583 1.26615142939456 0.289533297539998
AT1G69570_at 5.41736643038964 6.0180318904522 4.87124019607905 5.04407111401 5.13587774806747 4.08427170106843 6.18258685117809 6.51444531943913 5.64731513619605 5.08773278485024 4.5239821002583 4.42786247221566 4.77180151719433 5.13176749558405 3.83295940550046 5.30969944471155 4.82463500004213 4.22941653506416 5.37784277234893 0.233549186543902 0.233572952692266 0.235906439007046 0.230676233659199 0.235377707237877 0.257195222478268 0.247832665935015 0.245433730424294 0.241487628561731 0.232106340543741 0.233189859415720 0.233377208958428 0.237874333048731 0.237861687148722 0.241347682376603 0.240193622665857 0.274098816179195 0.243342199668661 0.234336737555233 1 1 - 26165466 26165989 26165758.273 26165191 26167159 - gene protein_coding_gene FALSE TRUE AT1G69570.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF1.10 (AtDOF1.10) (H-protein promoter- binding factor 2b) (DOF1.10) [Arabidopsis Thaliana] (GB:Q9SEZ3;GB:O81601); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26790.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE80370.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.994345250601135 -5.99689500306041 0.000267789357785644 1 7.48548247733955 10.4097259367287 -0.994345250601135 0.219354882058809
AT4G13220_at 6.6674153564829 7.13135522469199 6.1135110953947 5.93371010865347 7.0747231037 6.53592646037706 7.81501392465797 7.9285292591691 7.40053338256298 7.17027966331567 6.78913960875244 7.29296909732053 7.03002782969648 6.98939064177467 6.3790806176414 7.03410370973318 6.64598391959644 6.51549438327151 7.02996439319996 0.222626795163963 0.219213659537685 0.230058472152165 0.250238553491366 0.221906370114952 0.224890782281093 0.215331570118801 0.221203369071666 0.242863387197648 0.217078621266914 0.235166248520943 0.213543361208339 0.213543361208339 0.224828975455655 0.225467557001001 0.213543361208339 0.228650146614714 0.230659847062918 0.220304612932917 4 4|0 -|/ 7674660 7675241 7674988.222 7674284 7675309 - gene protein_coding_gene FALSE TRUE AT4G13220.1 similar to Os12g0276100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066563.1) -0.668423084802691 -5.99458314037833 0.000268508628511299 1 7.48330518901833 13.9174145028073 -0.668423084802691 0.128428965926742
AT2G32060_at 7.62038945192574 7.78714599866419 7.0225538153383 6.94667678542597 7.09456720732213 6.77605101171982 8.25197025416663 8.18055010585795 7.06720112852722 7.29402954859505 7.06563973768719 7.96369135358592 6.70511711776747 6.90679772105037 8.20918139077192 6.89941424254448 7.08989157896753 7.0189951924361 7.25007907435769 0.172726478993443 0.163700271124206 0.165475160800720 0.163429561509791 0.161352348169114 0.172864412436811 0.170105343748073 0.165450549415756 0.164544244662653 0.161670127898858 0.159346175690247 0.159169156913394 0.166659438085769 0.163097889854818 0.160457276953807 0.164686514756102 0.163357111897619 0.174281049023054 0.164738070351248 2 2|0 -|/ 13646341 13646876 13646691.7 13646093 13647447 - gene protein_coding_gene FALSE TRUE AT2G32060.1|AT2G32060.2|AT2G32060.3 40S ribosomal protein S12 (RPS12C) Identical to 40S ribosomal protein S12-2 (RPS12C) [Arabidopsis Thaliana] (GB:Q9SKZ3); similar to 40S ribosomal protein S12 (RPS12A) [Arabidopsis thaliana] (TAIR:AT1G15930.1); similar to Ribosomal protein L7Ae/L30e/S12e/Gadd45 [Medicago truncatula] (GB:ABE87516.1); contains InterPro domain Ribosomal protein S12E; (InterPro:IPR000530); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.485740311505344 -5.98964659066891 0.000270051589587541 1 7.47865307163756 14.6780435583083 -0.485740311505344 0.0647785179100947
AT3G52370_at 3.68081968748039 3.43627588579883 3.14424260139105 3.01720530451929 2.88258101816674 3.07729645064746 6.16658142342281 6.85276308222785 4.84683506288054 5.45923849504504 5.94475051536589 6.94389665755836 5.3663967110158 6.3430214351671 6.21608924669325 5.44887105518744 4.43188222442021 5.48975860020054 5.0838956946204 0.235162018178069 0.224237426040505 0.235918893085165 0.238928199013413 0.243708559227497 0.246043148927092 0.229972641653838 0.2338074754115 0.229849417166328 0.223818763390945 0.222622717567476 0.226857194234618 0.225445203946833 0.230983277600657 0.225047252918385 0.222622717567476 0.225759599030432 0.225606238732412 0.226121629502219 3 3 + 19429242 19429727 19429480.727 19428468 19430760 + gene protein_coding_gene FALSE TRUE AT3G52370.1 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein Identical to Fasciclin-like arabinogalactan protein 15 precursor (FLA15) [Arabidopsis Thaliana] (GB:Q9FT45); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11700.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06390.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35860.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71191.1); similar to Os03g0788600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051504.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.680342560599459 -5.98605501339403 0.000271180269940394 1 7.4752659266733 9.48375720998167 -0.680342560599459 0.132327368024219
AT1G09530_at 4.74645433226424 4.79032158171627 4.78819113778958 4.62956518375115 5.44962042089333 5.15162246622203 4.56352578346544 4.61583291722926 5.24060774569878 5.15549527792914 5.16807124848624 5.32740166409776 6.09416622684518 5.72476030320396 5.88880608158192 5.53078971281024 6.33920171291834 5.94878111110971 4.99685036050698 0.206684025753037 0.198745387709925 0.194885863310346 0.202275039421819 0.198340241822534 0.207986135735974 0.194885863310346 0.200918096738086 0.212944174977966 0.201731139879281 0.198849478641823 0.19811334435541 0.198796299480893 0.209692256479570 0.195178438525536 0.203505584351428 0.211540274749555 0.196890545695600 0.196983960195998 1 1 + 3078385 3079225 3078860.273 3076584 3079541 + gene protein_coding_gene FALSE TRUE AT1G09530.1|AT1G09530.2 PIF3 (PHYTOCHROME INTERACTING FACTOR 3); DNA binding / transcription factor/ transcription regulator Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork. Binds to G- and E-boxes, but not to other ACEs. Binds to anthocyanin biosynthetic genes in a light- and HY5-independent fashion.|Transcription factor interacting with photoreceptors phyA and phyB. Forms a ternary complex in vitro with G-box element of the promoters of LHY, CCA1. Acts as a negative regulator of phyB signalling. It degrades rapidly after irradiation of dark grown seedlings in a process controlled by phytochromes. Does not play a significant role in controlling light input and function of the circadian clockwork Identical to Phytochrome-interacting factor 3 (Phytochrome-associated protein 3) (Basic helix-loop-helix protein 8) (bHLH 8) (AtbHLH008) (BHLH8) [Arabidopsis Thaliana] (GB:O80536;GB:Q9SBC5); similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G28811.1); similar to PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5), transcription factor [Arabidopsis thaliana] (TAIR:AT2G20180.1); similar to Basic helix-loop-helix dimerisation re (GB:ABD33186.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.473739472374295 5.98275669624075 0.000272221342963238 1 7.4721534892898 10.2837575874214 0.473739472374295 0.0596035399918158
AT1G52760_at 8.64338024248662 9.0388062687947 8.94847502036025 9.05785934311161 9.04954746036669 8.59356179437197 8.01201282514533 8.1573731154901 8.06206154462338 7.39829193563704 8.34062376196525 8.39510615130123 8.21790524575948 8.26116033638155 8.52495193032271 8.38422874879508 8.56985290178006 8.01084712033067 7.26885153232925 0.168493594235318 0.165243496303013 0.177574977202920 0.167215859409163 0.16912990344746 0.172379376591832 0.16806823283362 0.171049262029774 0.180409666407444 0.180246573019401 0.175137449954598 0.162940072248952 0.173245295461581 0.172691853318677 0.172437761258531 0.162940072248952 0.181476625978213 0.173693786994494 0.172877415935472 1 1|0 +|/ 19655572 19656128 19655823.3 19654993 19656411 + gene protein_coding_gene FALSE TRUE AT1G52760.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G11090.1); similar to lysophospholipase [Hyacinthus orientalis] (GB:AAS20988.1); similar to Os02g0207900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.605575322644863 5.98268214160507 0.000272244925741802 1 7.47208311566045 16.6448701064873 0.605575322644863 0.109090235971696
AT4G01610_at 10.0920253481035 10.3482635897440 10.7030646465939 10.7268434858541 10.7263087962246 10.5843901472361 9.52626609507095 9.55036031214851 9.14931642609171 8.78379497650802 8.4873895580428 8.65537805518791 9.13255628328102 8.88244526473108 8.84801354613372 9.10186633881632 9.13078043201034 9.1819450314201 8.53007654010773 0.128744360691462 0.131201114549400 0.126751359037955 0.136072129033942 0.135417459800669 0.134617841349854 0.129313275799351 0.134537164571404 0.125865670738605 0.133340504232385 0.135713541428137 0.124022081933311 0.127250005032963 0.127414247255009 0.132628414925865 0.125307015759672 0.129270585309814 0.123888906480333 0.130273963457876 4 4 + 695987 696906 696281.545 694695 697206 + gene protein_coding_gene FALSE TRUE AT4G01610.1|AT4G01610.2 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02305.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32840.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1, propeptide; (InterPro:IPR012599); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.456203549422106 5.98082001557238 0.000272834671272637 1 7.47032512184961 19.156495033258 0.456203549422106 0.0510276271903441
AT1G78060_at 6.49064117486717 6.7167657470316 4.85142384437457 4.82072011898281 6.13301361676999 6.29387736844842 7.13943501692727 6.91543923104735 6.19109313002973 7.4030364379322 7.40852353332156 7.79242303754924 6.9187632165907 7.22941185327545 8.17235865763842 6.78583852562377 6.802304293578 7.86654032084377 7.52135361614254 0.188030516806366 0.175502392968918 0.195084604982706 0.191206513889211 0.179352812258844 0.194991640745706 0.179259902933936 0.195684434172912 0.212672425328180 0.184623508586596 0.175502392968918 0.188597647575810 0.18282742798235 0.183473745142949 0.191116009751193 0.175569545510782 0.185840815717702 0.183279160149820 0.175502392968918 1 1 - 29354692 29355232 29355012.636 29354573 29357818 - gene protein_coding_gene FALSE TRUE AT1G78060.1 glycosyl hydrolase family 3 protein similar to BXL1 (BETA-XYLOSIDASE 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G49360.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT5G10560.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G19620.1); similar to Glycosyl hydrolase family 3 C terminal domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96800.1); similar to beta-D-xylosidase [Oryza sativa (japonica cultivar-group)] (GB:AAX92971.1); similar to beta-D-xylosidase [Hordeum vulgare] (GB:AAK38482.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.478642760111638 -5.9804031850208 0.000272966875344158 1 7.46993152313044 13.3754219270582 -0.478642760111638 0.0619444569174257
AT1G13740_at 5.4025614540621 6.0059277411158 4.93398768530455 4.68001751865744 5.6906951300259 5.86834230788712 4.43403230918391 4.44108373534181 3.63352546649148 4.52955262983133 5.31575415215662 5.63688069228355 5.74104068493807 5.26572012657807 5.1559926048737 5.52546715358935 5.1335226867998 5.27307311993081 4.8596509478258 0.199430753022808 0.211092229019897 0.204962605425846 0.203394184411330 0.199052083868438 0.202499032197754 0.211451580809625 0.199052083868438 0.209346071842796 0.199931153323517 0.202513152560137 0.202304482988764 0.199052083868438 0.204498234811841 0.202695373614707 0.203647992162188 0.207119034719195 0.199052083868438 0.206349579450201 1 1 + 4714466 4715120 4714870.273 4713671 4715404 + gene protein_coding_gene FALSE TRUE AT1G13740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69260.1); similar to Os07g0602900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060209.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94628.1); similar to Os03g0419100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050378.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 0.631190535901861 5.97991925944185 0.000273120447619227 1 7.46947453318105 10.0430015272106 0.631190535901861 0.117391789596084
AT1G69440_at 5.94973213936911 6.41048769870805 6.19867203743976 6.37911988404563 4.71399892862583 5.23085406903284 5.9326102862863 6.49025817237268 5.11800850556107 4.94119805205515 3.65093169004146 3.79227151098841 3.97789615552064 4.0760067319983 2.93606543952656 4.15984387702415 4.13461871482496 4.71925631126723 4.62042390119227 0.26725565393186 0.263559173140027 0.263994963173817 0.274399900076303 0.263799967395326 0.277268337325273 0.276832868853035 0.267281250560005 0.281135397411945 0.278039252932155 0.263756339712772 0.265070535500948 0.271996023968035 0.276444345310993 0.273608583086554 0.265255667325452 0.279215390547052 0.265504841007009 0.274210506937368 1 1 - 26105275 26105672 26105479.182 26104722 26108829 - gene protein_coding_gene FALSE TRUE AT1G69440.1 AGO7 (ARGONAUTE7) Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds. similar to AGO1 (ARGONAUTE 1) [Arabidopsis thaliana] (TAIR:AT1G48410.1); similar to Os03g0449200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050473.1); similar to putative argonaute protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37538.1); similar to OSJNBa0005N02.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE02070.2); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) -0.763729846717608 -5.97913613507128 0.000273369170189692 1 7.4687349167576 10.3252523804026 -0.763729846717608 0.156990962999800
AT1G60560_at 5.30625299898935 5.22693324443298 4.10376923001181 4.28697445537682 5.17291303355237 5.35079296633713 5.60841537456439 5.38534451785664 4.74976013979443 5.32502287461927 4.80802574381517 5.56731374005424 4.978685703148 5.13692265784687 4.38048424525818 5.14521548039063 4.66121085152872 3.93725624586665 5.29328302803254 0.269093483617423 0.265080326155979 0.264058459786247 0.266246159472019 0.263394986415761 0.273284281564627 0.266477740924263 0.266809790456689 0.263394986415761 0.268507963588664 0.272552400071549 0.263394986415761 0.269005842866225 0.26791025850753 0.263394986415761 0.263394986415761 0.270806161557797 0.267976851349523 0.272662029872855 1 1 - 22312482 22312946 22312736.364 22312214 22315015 - gene protein_coding_gene FALSE TRUE AT1G60560.1|AT1G60560.2 SWIM zinc finger family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G13970.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84431.1); similar to Os09g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062830.1); similar to Os07g0227700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059218.1); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527)|similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G13970.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84431.1); similar to Os09g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062830.1); similar to Os07g0227700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059218.1) -0.474461729984083 -5.97401986729974 0.000275000228173553 1 7.46390041937254 10.0299634847922 -0.474461729984083 0.0602612161096498
AT3G63160_at 11.3703568125302 11.3164889315009 10.4220604040179 10.3759202134605 11.1811151549197 10.8631070559021 10.3995234592007 10.2284097776545 10.3677138873128 10.3136565965205 11.7324782640336 11.6474851976293 10.8251040601964 11.4960734067959 11.6661183509759 10.3282449159724 10.6854897275048 11.0563779778791 9.6146469940446 0.082050326375115 0.0835828456108107 0.0828877148345713 0.0883347162891312 0.082050326375115 0.0849362793813443 0.0845064808545003 0.0861726361397531 0.0879836500870093 0.0837465869581532 0.0848490934131502 0.082050326375115 0.0828346874743699 0.0840896607382448 0.0847675916392125 0.0826284735005366 0.0856687154140542 0.082050326375115 0.0914066039179683 3 3 - 23344778 23344931 23344848.182 23344488 23345009 - gene protein_coding_gene FALSE TRUE AT3G63160.1 similar to outer envelope membrane protein, putative [Arabidopsis thaliana] (TAIR:AT3G52420.1); similar to chloroplast outer envelope membrane protein [Erysimum cheiri] (GB:AAK52964.1) 0.481427478425465 5.9668131655795 0.000277315818617329 1 7.45708333328762 21.4087947162730 0.481427478425465 0.0636878097741472
AT4G34610_at 5.8345538792655 5.8462607038289 6.56070657650142 6.54530161436288 6.21302633165003 5.88270813496124 6.89077365467993 6.30139289866362 6.09237432166663 6.23629782584774 7.61129237988645 7.09665620775037 7.55488697566811 7.12449414938867 6.93478107871345 7.36588880142686 7.43115070490087 6.98928013223524 5.94257914275144 0.204193864699365 0.207241465532915 0.205474815470359 0.203994805752336 0.207006681425766 0.206865178684809 0.20780068499345 0.201317260637054 0.208955504592973 0.200346064100761 0.202657835437518 0.199978836343997 0.202828133407061 0.216610804712389 0.211877957143633 0.206047594519801 0.204577221924966 0.202647104006757 0.210311393123100 4 4|0 -|/ 16530595 16531158 16530825.8 16530547 16532503 - gene protein_coding_gene FALSE TRUE AT4G34610.1 BLH6 (BELL1-LIKE HOMEODOMAIN 5); DNA binding / transcription factor similar to BLH7 (BELL1-LIKE HOMEODOMAIN 7), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16400.1); similar to benzothiadiazole-induced homeodomain protein 1; BTH-induced homeodomain protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAS18416.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.627663543625195 5.95912697078165 0.000279809028001080 1 7.44980328220208 12.9363259244899 0.627663543625195 0.116969354917599
AT3G52740_at 6.10671958303373 6.35943020197487 6.0415743557687 6.29522460881413 6.04659700796407 6.11893527959323 7.91140278379708 8.55183788973328 6.96632486815328 7.39457577729514 7.1530032090953 6.86860790085157 7.21193226512229 7.5868717503372 6.15257927708197 7.00513686795963 7.07047281017396 6.85384512338468 7.25131572279412 0.182717575104876 0.187364229901226 0.198498107347789 0.185853547538747 0.188168319119063 0.183688475093742 0.192916071238743 0.196098698060482 0.193252451639865 0.191322908791427 0.185689318612936 0.184854541116922 0.182717575104876 0.188677261860673 0.186288037727977 0.185476982514397 0.199926388140049 0.192958209218212 0.186339009604240 3 3 - 19557424 19557811 19557593.727 19557352 19557942 - gene protein_coding_gene FALSE TRUE AT3G52740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44450.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77849.1) -0.661515386923195 -5.95716489840912 0.000280449400538467 1 7.44794333221698 13.7749043504591 -0.661515386923195 0.127590829268089
AT4G31780_at 9.10634297529449 9.1574236567451 8.69123858031021 8.8855295105731 8.95105976516293 8.95398603885039 9.79467644788215 9.7706173350769 9.59321628453463 9.60910931245924 9.38712340832423 9.43417037771406 9.29447988810556 9.42074042248117 9.3249206629247 9.61618843996182 9.23028132894185 8.96264830761058 9.60662361780991 0.101916339337211 0.0986270542264987 0.100981178940453 0.101796157116443 0.0966012419651997 0.101478349258809 0.103443203789594 0.101297138586035 0.100433368081263 0.0970475533303946 0.098283686513435 0.0991309851890167 0.100572795868235 0.0987471252419089 0.105150424305299 0.0998472944344938 0.102323046467900 0.104878708603576 0.0999475368910619 4 4|0 +|/ 15376087 15376932 15376563.2 15374005 15377140 + gene protein_coding_gene FALSE TRUE AT4G31780.1|AT4G31780.2 MGD1 (MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A); 1,2-diacylglycerol 3-beta-galactosyltransferase/ transferase, transferring glycosyl groups|MGD1 (MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 1, MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE A); 1,2-diacylglycerol 3-beta-galactosyltransferase Encodes an A-type monogalactosyldiacylglycerol (MGDG) synthase. It represents the isoform responsible for the bulk of MGDG synthesis in Arabidopsis. similar to MGD2 (monogalactosyldiacylglycerol synthase 2), 1,2-diacylglycerol 3-beta-galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G20410.1); similar to MGDC (monogalactosyldiacylglycerol synthase type C), 1,2-diacylglycerol 3-beta-galactosyltransferase [Arabidopsis thaliana] (TAIR:AT2G11810.1); similar to monogalactosyldiacylglycerol synthase [Cucumis sativus] (GB:AAC49624.1); similar to MGDG synthase A [Spinacia oleracea] (GB:CAB56218.1); similar to MGDG synthase type A [Nicotiana tabacum] (GB:BAB11980.1); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235); contains InterPro domain Monogalactosyldiacylglycerol synthase; (InterPro:IPR009695)|similar to MGDC (monogalactosyldiacylglycerol synthase type C), 1,2-diacylglycerol 3-beta-galactosyltransferase [Arabidopsis thaliana] (TAIR:AT2G11810.1); similar to monogalactosyldiacylglycerol synthase [Cucumis sativus] (GB:AAC49624.1); similar to MGDG synthase A [Spinacia oleracea] (GB:CAB56218.1); similar to MGDG synthase type A [Nicotiana tabacum] (GB:BAB11980.1); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235); contains InterPro domain Monogalactosyldiacylglycerol synthase; (InterPro:IPR009695) -0.427987798559381 -5.9567864494311 0.000280573101563575 1 7.44758450805326 18.6322603767915 -0.427987798559381 0.0350176467509204
AT4G21750_at 7.1305290788101 7.08614584820497 6.9962095217907 6.88303422386824 7.3679574684125 7.2704246188408 7.37346456956214 7.49582311394478 8.02151565927772 7.56750021400354 9.35792542795399 9.30995846973166 9.30500900495841 9.0614077587846 8.8896116404431 8.44996212336159 8.03580971615803 8.74819749003788 8.1083402987134 0.178221795873025 0.177460379354524 0.183568786569152 0.180269857447930 0.181423836283563 0.17755374646758 0.176986762544799 0.170240316366151 0.185964565815851 0.170240316366151 0.176690735845733 0.179357733973530 0.175603166012824 0.191351398801963 0.179992314552342 0.170240316366151 0.187785150474221 0.178261973134367 0.172941061889041 4 4 + 11559489 11560219 11559966.636 11555198 11560745 + gene protein_coding_gene FALSE TRUE AT4G21750.1|AT4G21750.2 ATML1 (MERISTEM LAYER 1); DNA binding / transcription factor|ATML1 (MERISTEM LAYER 1); DNA binding encodes a homeobox protein similar to GL2. expression is limited to the L1 layer in the embryo and shoot apical meristem. Expression is detected starting the two-celled stage of embryo development. Double mutant analysis with PDF2, another L1-specific gene, suggests that PDF2 and STEM1 functions are partially redundant and the absence of both of the genes result in abnormal shoot development. similar to ANL2 (ANTHOCYANINLESS 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00730.1); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05230.2); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to homeobox protein (GB:AAB37230.1); similar to A20 (GB:AAB49378.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.426766142763999 5.95363943122187 0.000281604062834617 1 7.44459976944281 15.5973755193927 0.426766142763999 0.0342905051506808
AT4G12720_at 10.5049285183246 10.5800879836440 11.4018421665017 11.4853984223387 10.5296401182029 10.2013932166176 9.31290410126104 9.2649860622685 9.8771047043684 9.3800297550069 9.49841297186767 9.20520477859187 9.19999822298935 9.46818509333981 9.42332784570608 9.59822076906416 9.3520979487331 9.23555321105103 8.98783151058025 0.120587005649698 0.121659001326377 0.125056422377609 0.124730758821636 0.123637985868621 0.129229001628736 0.119617328949049 0.120661536988271 0.127071087556729 0.120760996162363 0.125013709180983 0.122417698220064 0.120380149911709 0.120423835151869 0.120101854092649 0.123276598994146 0.126312188090344 0.126226677574251 0.123137196673821 4 4 + 7488211 7489518 7488983.182 7487336 7490074 + gene protein_coding_gene FALSE TRUE AT4G12720.1|AT4G12720.2|AT4G12720.3 AtNUDT7 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 7); hydrolase Negatively regulates EDS1-conditioned plant defense and programmed cell death. Identical to Nudix hydrolase 7 (EC 3.6.1.-) (AtNUDT7) (ADP-ribose pyrophosphatase) (EC 3.6.1.13) (NADH pyrophosphatase) (EC 3.6.1.22) (NUDT7) [Arabidopsis Thaliana] (GB:Q9SU14;GB:Q8LEK5); similar to ATNUDT6 (Arabidopsis thaliana Nudix hydrolase homolog 6), ADP-ribose diphosphatase/ NAD binding / hydrolase [Arabidopsis thaliana] (TAIR:AT2G04450.1); similar to Nudix hydrolase 5 (AtNUDT5) (GB:Q9SJC6); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Anti-sense to fibroblast growth factor protein GFG; (InterPro:IPR003293) 0.473239131528376 5.94911593734475 0.000283093229718957 1 7.44030668188445 19.8039544545547 0.473239131528376 0.0606118271716461
AT3G51860_at 9.1265091352205 9.54649127435657 11.1366018112866 11.3034061709258 11.1046757783056 10.2572317421038 10.8111502831442 10.7268538874911 8.49260960204626 8.42762525821665 3.69626723687866 2.93836138442524 7.38874384074062 4.88504999455971 3.06824786919099 4.42621543522104 7.986359744516 3.81107743339056 4.85912904721866 0.222664354723604 0.219876226518767 0.222837799718663 0.222998658982568 0.220624280606919 0.217305870441664 0.222531493059972 0.220781169905423 0.236158061179704 0.219586182204791 0.238210814163538 0.235685299008314 0.222794871221968 0.231622863643540 0.236127658698426 0.230203489083827 0.222183320437481 0.229705433906583 0.234643843073318 3 3|0 +|/ 19252513 19253393 19252996.875 19250404 19253856 + gene protein_coding_gene FALSE TRUE AT3G51860.1 CAX3 (cation exchanger 3); cation:cation antiporter Identical to Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger 3) (Ca(2+)/H(+) antiporter CAX3) (CAX3) [Arabidopsis Thaliana] (GB:Q93Z81;GB:O65022;GB:Q0WUY4;GB:Q9LKW8); similar to CAX1 (CATION EXCHANGER 1), calcium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT2G38170.1); similar to cax51 [Capsella bursa-pastoris] (GB:AAT70233.1); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium/proton exchanger superfamily; (InterPro:IPR004798) -0.793509935596398 -5.94183168187184 0.00028550941268236 1 7.43338637695812 16.5190291786172 -0.793509935596398 0.166840848851152
AT1G72090_at 5.08810146068478 5.29988688444191 5.04108357146047 4.63346673541802 5.10571298410442 4.67158805887595 5.31731748578189 5.26512113444017 5.53911883663633 5.43045946958982 4.50940456902902 4.94813971216739 4.26900320248996 4.7190100369247 4.8576674724675 4.74880963484563 4.61566402725339 4.93991925639948 5.61277169583604 0.195492754484232 0.197375529190419 0.193721654406448 0.192485019112577 0.190166627103573 0.200304739013842 0.196739097812553 0.191292115344052 0.206658474266687 0.202885493736142 0.190166627103573 0.191646975659401 0.192176263123331 0.194300210514109 0.196955038975305 0.190166627103573 0.201891617310008 0.204139032109785 0.209051988586005 1 1 + 27129757 27130372 27130102.636 27127229 27130557 + gene protein_coding_gene FALSE TRUE AT1G72090.1 radical SAM domain-containing protein / TRAM domain-containing protein similar to radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36390.1); similar to Os04g0434300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052840.1); similar to OSJNBa0088K19.13 [Oryza sativa (japonica cultivar-group)] (GB:CAD40910.2); similar to CDK5 activator-binding protein (ISS) [Ostreococcus tauri] (GB:CAL52951.1); contains InterPro domain Protein of unknown function UPF0004; (InterPro:IPR005839); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain MiaB-like tRNA modifying enzyme, archaeal-type; (InterPro:IPR006466); contains InterPro domain Deoxyribonuclease/rho motif-related TRAM; (InterPro:IPR002792); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.603070832806366 -5.93807576177095 0.000286764063755019 1 7.42981470370452 10.1669859092182 -0.603070832806366 0.109749060315376
AT2G31190_at 5.00870569361853 5.08232493496222 5.44701844102196 5.76501971577017 5.74570513426924 5.76398766977769 5.52186426368252 5.3223552622628 4.34123154640632 4.90838988131561 4.90498783204647 4.87725564166737 5.19147431381648 5.21816356888502 5.14164624886711 6.02539749655626 5.13431522161741 5.36430699569915 4.8776058198689 0.216143930230826 0.200398236000267 0.200398236000267 0.205834813216824 0.211781300445452 0.208679628125626 0.208471518489118 0.203502092837425 0.213480326956162 0.202901307411289 0.200398236000267 0.207314225054886 0.200398236000267 0.213255822939337 0.213529878606736 0.205600359866767 0.216575474565880 0.205026524246665 0.205742334094760 2 2 - 13298548 13299295 13298943 13298303 13300839 - gene protein_coding_gene FALSE TRUE AT2G31190.1 similar to EMB1879 (EMBRYO DEFECTIVE 1879) [Arabidopsis thaliana] (TAIR:AT5G49820.1); similar to Os04g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053319.1); similar to Protein of unknown function DUF647 [Medicago truncatula] (GB:ABE91893.1); similar to OSJNBa0073E02.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05447.3); contains InterPro domain Protein of unknown function DUF647; (InterPro:IPR006968); contains InterPro domain Virus capsid protein, alpha-helical; (InterPro:IPR008935) 0.484868933637856 5.93679526823291 0.000287193186562292 1 7.42859649358939 10.4277572214663 0.484868933637856 0.0662785120678542
AT2G30200_at 6.29421278020529 6.24426914193193 4.98981663004466 5.42198810505475 5.54505778268926 5.58350490817954 7.45211358635261 7.35849006023247 6.43797770868039 6.80473541756783 7.07621420720733 7.75512105971347 6.57390521765694 7.10394123246574 7.49483027023576 6.74208049690108 6.24896169755516 6.71095069947189 6.35869009979943 0.197537289433842 0.190673756687813 0.192625932454506 0.188941649928169 0.195867616793164 0.193668503908886 0.196617685922004 0.192970440879784 0.203866124677295 0.194623585360541 0.194826203717214 0.193995606373398 0.196354601135959 0.187862208194055 0.215985226577853 0.191251981281655 0.189874224233209 0.192045363203973 0.194651088495212 2 0|2 /|- 12890452 12890713 12890623.125 12890032 12892845 - gene protein_coding_gene FALSE TRUE AT2G30200.1|AT2G30200.2 [acyl-carrier-protein] S-malonyltransferase/ transferase|transferase similar to [acyl-carrier protein] S-malonyltransferase [Brassica napus] (GB:CAB45522.1); contains InterPro domain Acyl transferase region; (InterPro:IPR001227); contains InterPro domain Malonyl CoA-acyl carrier protein transacylase; (InterPro:IPR004410)|similar to [acyl-carrier protein] S-malonyltransferase [Brassica napus] (GB:CAB45522.1); contains InterPro domain Acyl transferase region; (InterPro:IPR001227) -0.511365000443408 -5.93499224654038 0.000287798612884909 1 7.42688071305768 12.8597074670864 -0.511365000443408 0.077297553367874
AT2G41190_at 4.96363741440551 5.20372391975264 8.17271108550292 7.89177888593552 7.13890571802522 6.77608491696452 8.24866693514679 8.27607880716337 2.84090478361346 5.46503402607751 3.56530217509765 3.04037191579133 5.89328348104485 4.39204677727134 3.14602214212761 4.40307426454732 7.1242098432334 5.04458940423703 4.6214849517064 0.213087490441933 0.213016571932556 0.214683131226667 0.211768279394383 0.211055712695383 0.212378267263116 0.213702592309349 0.224438638554102 0.222472198766892 0.213925864826999 0.215992662798339 0.238729071790962 0.214447189325730 0.222048977158152 0.221810727414364 0.211055712695383 0.215142125460316 0.215933965621144 0.225907135944024 2 2 - 17174670 17175716 17175232 17174357 17177485 - gene protein_coding_gene FALSE TRUE AT2G41190.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G39130.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE77592.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.544407314554831 5.93497252348922 0.000287805243296147 1 7.42686194136502 11.5265753374710 0.544407314554831 0.089747619440249
AT1G22070_at 9.71125399549796 9.61561849706434 10.0990525754103 9.95840006832262 9.8626775695275 9.77849844672663 9.11518593139613 8.8163772042211 8.5948326286538 8.33947425681544 8.57659415634538 8.58882855713454 8.72806370038199 8.66494018134616 8.29034112593926 8.74456843793976 8.9706550098195 8.55268209614445 7.97390074002626 0.120610368084722 0.125043610139627 0.124314469546811 0.127465789457351 0.125279344526809 0.124287301224046 0.122314169475865 0.131906703419028 0.133898881478519 0.131320391879738 0.123089610957918 0.118039759019895 0.122893421601793 0.131421813698888 0.128313914835157 0.121894605463116 0.123844342801849 0.125704895613902 0.133922112273667 1 1 + 7791018 7791741 7791333.182 7789337 7792103 + gene protein_coding_gene FALSE TRUE AT1G22070.1 TGA3 (TGA1a-related gene 3); DNA binding / calmodulin binding / transcription factor Encodes a transcription factor. Like other TGAla-related factors, TGA3 has a highly conserved bZIP region and exhibits similar DNA-binding properties. Identical to Transcription factor TGA3 (AtbZIP22) (TGA3) [Arabidopsis Thaliana] (GB:Q39234;GB:Q8LBG4;GB:Q9LM52); similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G77920.1); similar to TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] (GB:AAK84888.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.473448270459039 5.93418770822335 0.000288069214915805 1 7.42611493030284 18.0907930526691 0.473448270459039 0.0612579427102409
AT1G15400_at 9.16561427948003 9.3904955183406 9.682489862005 9.74283003046523 10.1291062068188 10.0883252743726 8.75729645644815 9.08516704819893 9.21355334423777 9.33322329411616 9.80727345555513 9.29196648900005 9.78967556562332 9.35898465631448 9.19491053417334 9.6354439203509 9.58656683292424 9.61519685437597 9.53259491902716 0.0957164769193793 0.0924024431389435 0.0922776134854867 0.0964616345257394 0.0933731942618425 0.097118150855265 0.100060175672112 0.100883351853310 0.0950399783164584 0.100701358158324 0.10109901130029 0.092994549695115 0.097082186818956 0.107502562672324 0.104184274004331 0.0943618164200622 0.0986312314984073 0.095011762276626 0.0954677510042704 1 1 - 5296400 5296754 5296564.636 5295768 5296897 - gene protein_coding_gene FALSE TRUE AT1G15400.1|AT1G15400.2|AT1G15400.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80180.1); similar to Os06g0601100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058003.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81575.1) 0.49312814360556 5.93297538138275 0.000288477500613152 1 7.42496080113274 18.9525619883495 0.49312814360556 0.0699480693613835
AT4G32350_at 6.22912925083354 6.22125262089741 5.76047674658558 6.00690817627409 6.65167224791772 6.81282462069802 7.18487530519992 7.28866970598997 7.01400492740267 7.0584099508395 6.83286764606917 6.08988315550662 6.38288524700624 6.61532636818835 5.89839442147693 6.6307974479893 6.76283508647898 6.33432304536555 6.73567189147921 0.158242252020605 0.167736405799467 0.157001298297768 0.162608034180472 0.154254032549703 0.160430172153783 0.164155151976548 0.164430560311011 0.160015886961365 0.155196970781847 0.158709452815690 0.154926478229277 0.156218876878585 0.167006438859804 0.16156985390369 0.161578168064514 0.160047552483274 0.154254032549703 0.157723876385997 4 4 + 15620190 15620601 15620467.455 15617472 15620916 + gene protein_coding_gene FALSE TRUE AT4G32350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79910.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46051.1); similar to Os02g0159200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045961.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) -0.457813071920836 -5.92551125013673 0.000291005259490817 1 7.41784964450283 13.2091975720498 -0.457813071920836 0.0540456823756326
AT1G27210_at 6.12540815031537 5.57313637444632 3.08829613553268 2.42502396468583 4.12432825241296 4.06069089357373 4.83470883450248 3.9932928157172 5.77535611574511 4.9860402195012 5.5360680403301 7.36275573947815 5.41852254566263 5.64560486797126 6.69093286841428 5.57744854935419 3.55761969735841 4.75152699228694 6.47904927075985 0.220417568771663 0.223111731717053 0.235670709203857 0.24920490704101 0.232380753605002 0.226048117799614 0.220526222333340 0.217140690866945 0.222709296241544 0.217140690866945 0.222207000637659 0.235381953907562 0.222833653301733 0.217140690866945 0.226807411361442 0.220386456673662 0.227433373538005 0.221237997508180 0.223816119804166 1 1|0 -|/ 9455870 9456405 9456104.3 9455355 9458013 - gene protein_coding_gene FALSE TRUE AT1G27210.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G59850.1); similar to Os06g0244700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057275.1); similar to putative potyviral helper component protease-interacting protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD45803.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.94315351079455 -5.9227973440004 0.000291930337471814 1 7.41526179851254 9.93529823495285 -0.94315351079455 0.208885274577890
AT2G27360_at 6.11812039775471 6.03661195861647 6.20784102450515 5.98972810387939 5.7315274405562 5.42787008954428 7.19226583919823 7.20865667994023 5.48887261689997 6.4947192756687 5.88162286653684 6.15579054044027 5.66056124602714 5.8587890346067 5.16651468692116 5.52013504711127 6.16631755486689 5.55289573768289 5.75065042436524 0.245448130032703 0.230354105477638 0.240333590445430 0.229363926613748 0.224763683602422 0.245974503962559 0.229581449704113 0.224837195958724 0.23470618906913 0.225589822912484 0.230929864788907 0.226784124736367 0.231857601175932 0.231575695701782 0.237931081477936 0.223563063737179 0.237145717213196 0.230706028040087 0.224884864525411 2 0|2 /|+ 11714396 11714910 11714682 11713276 11715143 + gene protein_coding_gene FALSE TRUE AT2G27360.1 lipase, putative similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28610.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.482878910313324 -5.9123620364339 0.000295517480451457 1 7.40529987670428 12.0674489142087 -0.482878910313324 0.066280911817506
AT2G26200_at 5.44705003482753 5.98889994804046 5.55065984566627 5.66445555334765 6.53773216674082 5.98527962349638 5.31200814509739 4.96588332400114 4.11125956770463 3.99540704747868 4.95588674982270 5.53263136104576 4.81377486876893 5.28856516775928 4.73381663990218 5.05096819973095 5.43786488445762 4.84749717775571 4.31411269842839 0.258569073108393 0.249152841165546 0.254585620536910 0.252303761669614 0.249997534621574 0.257376581829358 0.248469045972526 0.247594156237314 0.254991353055886 0.255835209425032 0.247341269050429 0.247341269050429 0.249444120551238 0.257305587373473 0.251067644121937 0.247341269050429 0.250474392158508 0.253224835727067 0.247341269050429 2 2 + 11162850 11163375 11163055.545 11159804 11163544 + gene protein_coding_gene FALSE TRUE AT2G26200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G54650.1); similar to SAM (and some other nucleotide) binding motif [Medicago truncatula] (GB:ABE86246.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.72421864713632 5.91088195074613 0.000296030155948163 1 7.40388547611876 10.2929387813318 0.72421864713632 0.148015566575562
AT2G32240_at 8.3648345277472 8.67974572810689 9.03420535373508 9.02396968698662 8.48188552357325 8.52439019484571 8.56152125289418 8.70798833799342 7.59783393985547 7.82219231353025 8.9538657385293 9.16199687055281 7.62779068780061 8.6719494177247 8.08651343397504 8.6597634873405 8.00074226940581 7.94806780411205 7.48881128740048 0.180516064432265 0.175169081334966 0.175388235442873 0.177989113074889 0.177816290329847 0.183096780736771 0.179704244508353 0.175169081334966 0.189840457423356 0.17614301629285 0.177861172968627 0.182279331457251 0.186353973478257 0.18648634934371 0.186664090524243 0.177556201051121 0.181153036060809 0.179729035411303 0.190550355785977 2 2 - 13691725 13692550 13691996.364 13691376 13695401 - gene protein_coding_gene FALSE TRUE AT2G32240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05320.3); similar to kinesin, putative [Leishmania major] (GB:CAJ04095.1); similar to OSIGBa0126B18.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66915.1); similar to OSJNBa0008M17.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE04334.2); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.470073630758889 5.91025260966588 0.000296248443478933 1 7.40328395496908 16.6848752727064 0.470073630758889 0.0605773116016027
AT1G07040_at 9.11638240454871 9.26023495827571 9.31770745907023 9.517964147223 9.9943261087778 9.4629167095174 8.1049785652369 8.04382694826199 7.77185823661793 7.38840060434895 7.21158464906912 7.03539419749831 7.93081408747409 7.92109946328281 6.88423190049779 8.23156213729063 8.53951227284682 8.31384493862526 7.4818896523972 0.230686791178484 0.228432325814641 0.234652015924759 0.233605409957021 0.230044890949460 0.237592913264278 0.233420023353516 0.230964957507172 0.265573803160008 0.231438470337903 0.235178351263348 0.239207745972699 0.236542906822047 0.231722851594352 0.246887520893503 0.234597326769428 0.247633807485341 0.234784940666087 0.236444783702620 1 1|0 -|/ 2161232 2162189 2161773.7 2160937 2163307 - gene protein_coding_gene FALSE TRUE AT1G07040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27030.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05517.1); similar to Os10g0463800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064789.1) 0.576497755884015 5.90657918491771 0.000297526094890589 1 7.39977160630284 16.7552363060862 0.576497755884015 0.101930778886507
AT1G32470_at 11.5799768630336 11.3654942396573 10.5608124131786 10.3963950808162 11.0447079266453 10.8805798171447 12.2668569015509 12.0702667873291 12.0155751182825 12.2329578868547 12.2984901060540 12.6007717935435 12.0160422205337 12.1138228318779 12.6304052219345 12.3690235690047 11.8161699647018 12.1826549625593 12.0796507300094 0.062509978536348 0.0602964382055083 0.0638132885166846 0.0620588507910839 0.0605076107456829 0.0633940868161079 0.0624342771527135 0.0620878971847472 0.0644476433898201 0.0618272462074551 0.0628476735629538 0.0615464451015897 0.061866709221788 0.067796841680253 0.0609541943632328 0.0609760979689415 0.0650669425590426 0.0618593534126653 0.0616960346283525 1 1|0 -|/ 11739509 11740196 11739828.375 11739284 11740341 - gene protein_coding_gene FALSE TRUE AT1G32470.1 glycine cleavage system H protein, mitochondrial, putative Identical to Probable glycine cleavage system H protein 2, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9LQL0); similar to GDCH (Glycine decarboxylase complex H) [Arabidopsis thaliana] (TAIR:AT2G35370.1); similar to Glycine cleavage system H protein, mitochondrial precursor (GB:P16048); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Glycine cleavage H-protein; (InterPro:IPR002930); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.477998441526272 -5.90377207671728 0.000298506498720273 1 7.39708608217077 23.4520448347486 -0.477998441526272 0.0644315687714232
AT3G05420_at 6.80190414816075 6.58966462979321 5.65754058249239 5.60398040529944 5.85797301808299 5.62982294952427 6.86630086077981 6.76823377606608 6.42776094715159 6.24736729992145 6.7592353011285 6.98414173138494 6.0307097062814 6.38228601447396 6.80164130048102 5.84782722069012 5.92634764304478 5.78738281854089 5.83785568493365 0.198052108024975 0.190394169602536 0.201668729423138 0.195827627352612 0.198532456415990 0.201782061672114 0.198793753849943 0.193214785735568 0.203897464553022 0.193196955178848 0.196046475730794 0.190849720350967 0.190394169602536 0.214456429958850 0.210425080245595 0.191843384781654 0.20878926643995 0.198567795788404 0.197168449151956 3 3 + 1565916 1567011 1566498.636 1561784 1567324 + gene protein_coding_gene FALSE TRUE AT3G05420.1|AT3G05420.2 ACBP4 (ACYL-COA BINDING PROTEIN 4, ACYL-COA-BINDING DOMAIN 4); acyl-CoA binding Acyl-CoA binding protein with high affinity for oleoyl-CoA. Expressed in all plant organs. Involved in fatty acid transport. similar to ACBP5 (ACYL-COA BINDING PROTEIN 5, ACYL-COA-BINDING DOMAIN 5), acyl-CoA binding [Arabidopsis thaliana] (TAIR:AT5G27630.1); similar to putative transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAR88580.1); similar to Os03g0835600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051819.1); similar to acyl-CoA binding family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99749.1); contains InterPro domain Acyl-coA-binding protein, ACBP; (InterPro:IPR000582); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.462622395924609 -5.90338086324546 0.000298643413502061 1 7.39671170976134 12.4648981017776 -0.462622395924609 0.0572870830407133
AT1G54360_at 8.29760457531897 8.03949369597538 7.73061021887946 7.51855652115031 7.76298869146418 7.25981370822175 7.53043990379919 7.46218455868105 7.88204230572479 7.77275885692551 7.27936865271783 7.21122679384065 6.72529345310479 6.58068924534543 7.14839028590809 6.72907211014747 6.5054998804631 7.12127415007788 7.80447423460932 0.18197197997941 0.179395928941894 0.179476182782022 0.176453549874341 0.187422182865743 0.178969220526044 0.175067229096291 0.182943099134124 0.185308067348578 0.184500702856128 0.185917749310992 0.180949296935112 0.177493702863343 0.196653606544310 0.176222762364428 0.174916774483451 0.191355550068487 0.179706917328993 0.185861211763912 1 1|0 +|/ 20295830 20296801 20296526.3 20294223 20296991 + gene protein_coding_gene FALSE TRUE AT1G54360.1|AT1G54360.2|AT1G54360.3|AT1G54360.4 RNA polymerase II transcription factor/ binding / transcription initiation factor similar to TAFII59 (TATA box associated factor II 59), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G04950.3); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); similar to hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] (GB:NP_587928.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442)|similar to TAFII59 (TATA box associated factor II 59), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G04950.3); similar to Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) (ISS) [Ostreococcus tauri] (GB:CAL56382.1); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442)|similar to TAFII59 (TATA box associated factor II 59), transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G04950.3); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); similar to hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] (GB:NP_587928.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain TATA box binding protein associated factor (TAF); (InterPro:IPR004823); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442) -0.585797521408638 -5.90325662367371 0.000298686908576553 1 7.396592813188 15.0663916277882 -0.585797521408638 0.105184192430728
AT3G17410_at 9.67130952593902 9.71465908306319 9.99399524461721 10.0099236051405 10.1145544135162 9.97409966583152 9.00501148801306 9.11301434369263 9.58689766031882 8.85430652149245 9.40592191802968 9.22604295920814 9.38652004404742 9.40028781759623 9.03568889750837 9.51857948676653 9.55015363557557 9.23255803545998 9.01703097815779 0.0888094287256294 0.0873946995047777 0.0884452465546622 0.0873946995047777 0.0873946995047777 0.0941332187236616 0.0956763515586524 0.0890551957294206 0.0971407612692754 0.094484242986179 0.0906674370099944 0.087665335449813 0.0918957042187643 0.0894529895878444 0.0929768499713466 0.0873946995047777 0.0905712076673541 0.0883763346222434 0.0893678626738912 3 3|0 +|/ 5957417 5958864 5957994.6 5955915 5959112 + gene protein_coding_gene FALSE TRUE AT3G17410.1 serine/threonine protein kinase, putative similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G48210.2); similar to Pto kinase interactor 1 [Lycopersicon esculentum] (GB:AAC61805.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.419434334025173 5.89851533707259 0.000300351979542243 1 7.39205351886956 18.9481779975252 0.419434334025173 0.0316860441878826
AT3G02210_at 4.80782181359366 4.96171929982469 4.34620560500063 4.67483167160231 3.91854906350022 4.1569137202313 4.78911628751674 5.11214178786312 5.04898693344781 5.23036005225396 4.82446879159878 4.7833965636836 4.54336926312531 4.65329513953548 4.79314211727032 5.09538677347126 4.60133785829187 5.11372277873151 5.50423502634858 0.179817813672544 0.186701061130244 0.181694071529151 0.179817813672544 0.181156739549354 0.19096621330727 0.191432453758072 0.190894889990223 0.190100175521000 0.184361400333430 0.190614147395746 0.188078430618898 0.191385912452331 0.18576753932397 0.182180167509673 0.184444889766902 0.183822852989201 0.182282541431770 0.187040005802963 3 3 - 409373 410101 409702.091 409208 411659 - gene protein_coding_gene FALSE TRUE AT3G02210.1 phytochelatin synthetase family protein / COBRA cell expansion protein COBL3 Identical to COBRA-like protein 1 precursor (COBL1) [Arabidopsis Thaliana] (GB:Q9SRT7); similar to COB (COBRA) [Arabidopsis thaliana] (TAIR:AT5G60920.1); similar to phytochelatin synthetase family protein / COBRA cell expansion protein COBL2 [Arabidopsis thaliana] (TAIR:AT3G29810.1); similar to COBRA-like 1 protein precursor (BRITTLE CULM1-like 6 protein) (GB:Q6Z4G8); similar to hypothetical protein [Cleome spinosa] (GB:ABD96927.1); similar to phytochelatin synthetase-like protein [Phaseolus vulgaris] (GB:AAR13304.1); contains InterPro domain Carbohydrate-binding; (InterPro:IPR008965); contains InterPro domain Phytochelatin synthetase-like conserved region; (InterPro:IPR006918); contains InterPro domain Cellulose-binding family II/chitobiase, carbohydrate-binding; (InterPro:IPR012291) -0.551876937709604 -5.89817872283973 0.00030047057922181 1 7.39173110383274 9.62701686350673 -0.551876937709604 0.0936484336044965
AT1G60550_at 7.54463122205653 7.26148066020057 6.01122591145325 5.76906815959297 6.85901809401635 5.7275319822132 8.4242931852295 8.145081110294 8.55286679153739 8.66444835219271 8.6049061156862 8.7427675135112 8.30154321388795 8.53785007169016 8.88373083878852 8.87077200169155 8.42681676157518 7.98791102044359 8.849384234835 0.171147798455868 0.169131790543057 0.176890891805659 0.166663366726898 0.167210002200117 0.207005406963953 0.166291349626142 0.163137277038003 0.184461590629866 0.161069508911627 0.161762881289447 0.172782291091133 0.159555445356463 0.160246589151106 0.168237477736070 0.164246999165576 0.160351650998361 0.171602361667823 0.164642313744969 1 1|0 -|/ 22309660 22310558 22310039.875 22309496 22311894 - gene protein_coding_gene FALSE TRUE AT1G60550.1 naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G16210.1); similar to Os01g0662700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043784.1); similar to Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase (ISS) [Ostreococcus tauri] (GB:CAL50544.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain Naphthoate synthase; (InterPro:IPR010198) -0.948261554160975 -5.8888856613353 0.000303765139566547 1 7.38282263177754 15.5845097831392 -0.948261554160975 0.211738220640816
AT4G28660_at 9.43089532757968 9.234353938076 8.7756120688449 8.72707128073379 8.67497025555537 8.51131311500469 10.7024070759264 10.7059855412436 9.8248865557701 9.76190622951565 10.0503075923148 10.5525600011151 9.84642407476644 10.0876359953041 10.8757361812849 10.0206617725770 9.6748272443221 10.0152828889451 9.42653165172392 0.102057115016109 0.0992874405519455 0.103754893696509 0.102095824071113 0.109264087438788 0.106063485096845 0.098066793304391 0.099692705153072 0.0993161123774716 0.0999639335496359 0.097410732562743 0.097538952084276 0.0985955420294514 0.100788094324895 0.102325415918754 0.097877195750972 0.108341631768261 0.101655063540626 0.105586981463103 4 4|0 +|/ 14150016 14150710 14150468.111 14149922 14151110 + gene protein_coding_gene FALSE TRUE AT4G28660.1 photosystem II reaction centre W (PsbW) family protein Similar to PsbW subunit of photosystem II. Identical to Photosystem II reaction center PSB28 protein, chloroplast precursor (Photosystem II protein W-like) (PSB28) [Arabidopsis Thaliana] (GB:Q8W0Y8;GB:Q9M0G6); similar to putative photosystem II protein reaction center W [Oryza sativa (japonica cultivar-group)] (GB:BAD87310.1); contains InterPro domain Photosystem II protein PsbW, class I; (InterPro:IPR005610) -0.438423733756463 -5.88767808294676 0.000304196142712769 1 7.38166397745326 19.2510948826198 -0.438423733756463 0.0450544721266295
AT2G20490_at 7.19695472019466 7.24555220730877 6.42008610776473 6.78372961806674 7.39395119020211 7.36150195560511 7.07688689425327 6.91693447727384 6.39460052493729 6.49763472161317 5.59141009253339 5.75408305990746 6.01057108278006 5.56491065298644 6.20105045049556 5.81604356805354 6.50003980106795 5.40560169470656 7.24397648791467 0.213439350692129 0.205561198039586 0.207844917617552 0.211832208453754 0.207156730932482 0.210406100561621 0.207869299810171 0.205701470011649 0.223699429332741 0.205488394015839 0.214342093615515 0.206315184382917 0.213557173191065 0.208062057153561 0.203770931223770 0.207157542666558 0.208568146109754 0.212891771385623 0.212142070513012 2 2|0 +|/ 8838978 8839765 8839525.9 8838797 8839997 + gene protein_coding_gene FALSE TRUE AT2G20490.1|AT2G20490.2 EDA27/NOP10 (embryo sac development arrest 27); RNA binding Identical to H/ACA ribonucleoprotein complex subunit 3-like protein [Arabidopsis Thaliana] (GB:Q93XX8;GB:Q9SIM0); similar to nucleolar RNA-binding Nop10p-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD21599.1); contains InterPro domain Nucleolar RNA-binding protein Nop10p; (InterPro:IPR007264) -0.487935817343317 -5.88350786425145 0.000305689711492705 1 7.37766085170928 13.3332168355694 -0.487935817343317 0.0694887307056907
AT3G09500_at 10.6362666551478 10.7214537017777 9.92952397598715 9.988233326007 10.4341109674483 10.0601943586419 10.6135750090347 10.8327623256031 10.6043516882767 10.8922670985620 10.5502065502262 10.766220325203 10.2634792816792 10.2844374221920 10.9735818223794 10.1232561143572 9.96378923045785 10.0678904507140 10.8695031107007 0.105780138779985 0.105334488752369 0.119118213072119 0.118963686996994 0.103373806167117 0.113979227650638 0.115069389420277 0.107655108465429 0.118443712560172 0.102434818624066 0.103144721288059 0.102434818624066 0.104622755148898 0.105534048575640 0.105735980239608 0.102434818624066 0.123996777803381 0.111906931349913 0.103250013607991 3 3|0 +|/ 2917187 2917680 2917485 2916958 2918114 + gene protein_coding_gene FALSE TRUE AT3G09500.1 60S ribosomal protein L35 (RPL35A) Identical to 60S ribosomal protein L35-1 (RPL35A) [Arabidopsis Thaliana] (GB:Q9SF53); similar to 60S ribosomal protein L35 (RPL35D) [Arabidopsis thaliana] (TAIR:AT5G02610.1); similar to 60S ribosomal protein L35 (GB:Q9M5L0); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.506299207699194 -5.88156613080186 0.000306387882368551 1 7.37579593528581 20.9834225143714 -0.506299207699194 0.0771133467013118
AT1G19370_at 5.92819442220558 6.2264864727708 5.5158655372206 5.52373289551473 6.54354075870122 6.39378836632551 4.99412238948641 4.83345396564991 4.90777146349989 4.67175699083455 4.99338813258694 4.96945654589452 5.34321496679796 5.09249711936925 5.34900158551582 4.85351882550107 5.14163346747317 5.1958119724113 4.41552034568744 0.204108998548233 0.200513155539148 0.196989873482997 0.195358447448634 0.201485646967314 0.206439609517616 0.198215793209305 0.192287961404053 0.202743841502235 0.196639918316977 0.208839886937516 0.194018823461266 0.193425377967839 0.192699046934053 0.195377952361314 0.202548972010881 0.202423603884862 0.197651372699961 0.196425581301356 1 1 - 6692972 6693448 6693212.364 6692755 6694925 - gene protein_coding_gene FALSE TRUE AT1G19370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75140.1); similar to Os06g0115200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056610.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC22202.1); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.475483318591065 5.88129609329646 0.000306485115357468 1 7.37553653118233 10.6360638977932 0.475483318591065 0.0641190682821163
AT1G62390_at 7.99556572905977 8.14425157253627 7.45413110175477 7.67941880254174 8.0984262369241 7.99684929131191 8.47223967068508 8.58078150658215 8.28139947728759 8.07632898839194 7.86201305953559 7.8283282831596 7.97679082905184 7.60460531986958 8.22535351611997 8.06695828041555 7.78739731629305 7.40988352558181 8.42210038206592 0.161784704445992 0.167882230295614 0.176482385911848 0.172689894257918 0.161784704445992 0.187006416454799 0.161940393982238 0.164551780091342 0.172762638262751 0.168568737196186 0.172411004933890 0.166173540650963 0.167165567977416 0.210493176127628 0.168479222813062 0.165993307754036 0.186553937387774 0.174862168461279 0.168530495405175 1 1 - 23088319 23088855 23088644.273 23087958 23090792 - gene protein_coding_gene FALSE TRUE AT1G62390.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT2G25290.1); similar to Octicosapeptide/Phox/Bem1p [Medicago truncatula] (GB:ABD32646.1); similar to Os09g0135400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062638.1); similar to Octicosapeptide/Phox/Bem1p [Medicago truncatula] (GB:ABE85285.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.452889972288898 -5.87988978800769 0.000306992032901193 1 7.37418540700392 16.1052625966754 -0.452889972288898 0.053328145741867
AT1G26270_at 7.20326248794244 7.43220228772361 6.12984107258792 6.31001292342076 6.71886789467035 6.8273549665214 6.42256693621913 6.56997057589343 7.07591974227456 7.01434238031019 7.01253309765457 7.13848313936537 6.28117255448298 6.99195407822175 6.56571117271608 6.31869322101303 5.97242473586262 6.58261176191299 7.29418034328642 0.185444633186405 0.182012634913505 0.199770647504579 0.183819208194443 0.180253590687638 0.198379026779847 0.185451234554593 0.191082092865054 0.189667824413155 0.181325684671196 0.182924320211477 0.179514783938795 0.183663179241460 0.179312029408588 0.182753505494797 0.185776015139720 0.191353559894721 0.183948988600473 0.189270737894358 1 1 - 9089813 9090315 9090061.273 9089511 9092444 - gene protein_coding_gene FALSE TRUE AT1G26270.1 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT2G03890.1); similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13640.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); similar to Os06g0283400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057397.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96840.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) -0.465340438057297 -5.87837700086491 0.000307538357518420 1 7.372731612554 13.5698076225111 -0.465340438057297 0.0595400111291779
AT1G18360_at 8.50702176305143 8.49471694588335 7.32101811378564 7.04153259699704 7.8539390328726 6.96167150339268 9.72846688805389 9.61351490454563 8.8855553154085 9.29182858468481 9.43419719720932 9.90131900400216 9.46058614932445 9.43322871417336 9.58095528255916 9.22361371379585 8.51428081986483 9.26069745520264 9.13050768961567 0.116253417477167 0.113977532931254 0.135208220575838 0.127847578190030 0.118572171355107 0.150209744770206 0.117378448852070 0.118399487059584 0.126330445767776 0.113142434746006 0.113812419853216 0.117536207230373 0.113142434746006 0.126651136029164 0.119967080399917 0.115356231004343 0.120317070638503 0.121753024163793 0.113142434746006 1 1 - 6317046 6317836 6317383.636 6316688 6319420 - gene protein_coding_gene FALSE TRUE AT1G18360.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G73480.1); similar to Os09g0394700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063095.1); similar to putative monoglyceride lipase [Oryza sativa (japonica cultivar-group)] (GB:BAD26447.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.771455275754051 -5.87586315417528 0.000308448557025742 1 7.37031495540475 17.4171053795325 -0.771455275754051 0.163040902259742
AT2G28810_at 6.81537390916712 6.78258377708162 7.45635690989107 7.05459761063292 8.21914291913347 7.49156081115425 6.82214221479115 6.52786889048095 5.29149745411168 5.48517397770385 5.9239521155144 6.4628268884433 5.79989363621191 5.76483564278906 6.10275637347652 6.22364540173837 6.16973582417994 6.18469323367444 5.50229397731091 0.216701337333165 0.219238076209949 0.220160760262900 0.222018591569526 0.21804543343925 0.223042989791719 0.216815156256781 0.219420059483577 0.238014709300365 0.223206235598014 0.219316482508716 0.215967596853331 0.224204099148995 0.228280756957080 0.224165148222171 0.214830913995309 0.223227365259703 0.226533597450329 0.227315046043145 2 2 + 12371523 12372113 12371785.455 12370707 12372454 + gene protein_coding_gene FALSE TRUE AT2G28810.1 Dof-type zinc finger domain-containing protein Identical to Dof zinc finger protein DOF2.2 (AtDOF2.2) (DOF2.2) [Arabidopsis Thaliana] (GB:Q9ZV33); similar to OBP2 (OBF BINDING PROTEIN 2), DNA binding [Arabidopsis thaliana] (TAIR:AT1G07640.3); similar to Dof zinc finger protein [Solanum tuberosum] (GB:CAB89831.1); similar to Os03g0821200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051725.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.735571475642031 5.87409510431 0.000309090488255488 1 7.36861463254451 12.8988854765644 0.735571475642031 0.152686615381344
AT3G32940_at 5.94898204417988 5.87212826556092 6.87791892528398 6.50204164831285 6.91343555511804 6.75200288096908 5.85407610462265 5.34818585706579 5.4683521217908 5.59850132551714 5.34234411995579 5.70998000771953 5.79003981132997 5.56086051457739 5.33397431016098 6.11653177176364 5.91730621386357 5.56055315685902 5.30649274069793 0.190397556114933 0.186233409522774 0.182346457175566 0.182059731426731 0.183450538972193 0.185322424535865 0.18085245961676 0.184595635473931 0.197503041618284 0.184190556816219 0.181394018113861 0.182816682696685 0.184869169126898 0.185056620059891 0.185272028459638 0.182921050170251 0.194628130531180 0.187084936166663 0.184629514144065 3 3 - 13494808 13495350 13495060.727 13494658 13497500 - gene protein_coding_gene FALSE TRUE AT3G32940.1 similar to nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G51300.3); similar to Os08g0100700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060755.1); similar to putative KH domain protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03549.1); contains domain RNA-BINDING PROTEIN RELATED (PTHR11208); contains domain Positive stranded ssRNA viruses (SSF88633); contains domain Eukaryotic type KH-domain (KH-domain type I) (SSF54791); contains domain ZN FINGER SPLICING FACTOR 1 (PTHR11208:SF6); contains domain no description (G3D.3.30.70.210) 0.607086680086893 5.86913303070929 0.000310899905451619 1 7.36383986162993 11.8207118106128 0.607086680086893 0.113370708494481
AT1G74260_at 8.30235619452758 8.4696787243351 7.99122714156923 8.03563321972137 8.23756156584686 7.87159224849947 8.84573300333961 8.69039288427524 8.59726416468793 8.68712080536849 8.09275149982313 8.31591339443823 7.7551050018048 8.09082796397449 8.4384332706589 8.3240820575357 8.17329483576333 8.16997935420876 8.59547562277287 0.14556285892885 0.143882487816553 0.153113854643146 0.158987338429849 0.139750401045343 0.142728743497676 0.146075566899533 0.146716723060585 0.153954407152704 0.139382597648798 0.140662760185797 0.141575707208360 0.149221123118586 0.145093368855505 0.144267625229093 0.141340477550690 0.145172777912292 0.145214947400534 0.142502282189652 1 1 - 27926698 27927184 27926891.455 27926494 27931107 - gene protein_coding_gene FALSE TRUE AT1G74260.1 catalytic Identical to Probable phosphoribosylformylglycinamidine synthase, chloroplast precursor (EC 6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide ribotide amidotransferase) (FGARAT) (Formylglycinamide ribotide synthetase) [Arabidopsis Thaliana] (GB:Q9M8D3); similar to phosphoribosylformylglycinamidine synthase [Glycine max] (GB:AAO23951.1); similar to formylglycinamide ribonucleotide amidotransferase [Vigna unguiculata] (GB:AAL55431.1); similar to putative formylglycineamide ribotide amidotransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD82369.1); contains InterPro domain Phosphoribosylformylglycinamidine synthase, eukaryotes and proteobacteria; (InterPro:IPR010073); contains InterPro domain AIR synthase related protein, C-terminal; (InterPro:IPR010918); contains InterPro domain AIR synthase related protein; (InterPro:IPR000728) -0.499804216521998 -5.86584635621516 0.000312104769019930 1 7.36067499521295 16.7038561827071 -0.499804216521998 0.0750412639917826
AT1G31850_at 6.05981153983623 6.10686438339798 4.26404423679513 4.54731813075364 5.53907474078249 5.53390712351396 4.32353394196552 4.55449360394697 3.84490709631101 4.30217833410082 5.52773049127551 6.13572243530416 4.83289651261548 5.48939447302855 6.36070167968465 5.02021127348085 4.52747568077926 5.81367339048643 4.53293153936789 0.233500031169518 0.233701706152277 0.237060387154782 0.235591231594590 0.234451633950437 0.233310477631217 0.236432951992594 0.239720279969336 0.247735569805482 0.238463908056655 0.241254137235031 0.237581272380405 0.233310477631217 0.242151096376786 0.242693660602731 0.234356957192281 0.248535766426030 0.235670994024335 0.233310477631217 1 1|0 +|/ 11432624 11433239 11432886.4 11430202 11433679 + gene protein_coding_gene FALSE TRUE AT1G31850.1|AT1G31850.2|AT1G31850.3 dehydration-responsive protein, putative similar to ERD3 (EARLY-RESPONSIVE TO DEHYDRATION 3) [Arabidopsis thaliana] (TAIR:AT4G19120.2); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.473356804748292 5.86429695710333 0.000312674535236082 1 7.35918239557408 9.96120499529487 0.473356804748292 0.063778835316645
AT1G68300_at 9.44561363637102 9.58510691385251 9.92440567137528 10.1007636650963 9.91659581766963 9.39342109606095 9.19498770757489 9.1950932962873 8.47543007895774 8.89689800692904 9.49766987669933 9.37826700597238 9.46049869590846 9.4093289387045 8.94904324114119 9.58516896478277 9.14217847610733 9.13958131840078 8.65492340659643 0.146190286956709 0.148543151011015 0.149244297102016 0.150629363648778 0.146728747126757 0.157227144853205 0.149159431216132 0.153997084614179 0.167539239611827 0.154041614052447 0.146530348849256 0.144251066715267 0.149462870927112 0.152171073746286 0.153807483535271 0.148302508203181 0.153695334504872 0.158343074335498 0.15411139530175 1 1|0 -|/ 25602193 25602845 25602542.333 25601994 25603020 - gene protein_coding_gene FALSE TRUE AT1G68300.1 universal stress protein (USP) family protein similar to ethylene-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G09740.1); similar to Os01g0511100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043170.1); similar to Universal stress protein (Usp) [Medicago truncatula] (GB:ABE84254.1); similar to Os01g0303800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042835.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.561531370624654 5.85338211828576 0.00031672068447215 1 7.34865636329179 18.5924822566405 0.561531370624654 0.098545828544708
AT1G27130_at 8.5667580137279 8.74610205632864 9.37023729147581 9.3925276466586 9.79193645943224 9.18559012471331 9.45149183922039 9.38805026578575 9.69189367001612 9.50645563789624 10.5392699874252 10.6454991319906 10.2427405914495 10.5078399948423 10.2170068421211 10.1614095614906 9.70918120556687 10.3148703072619 9.29718800302024 0.161100449070074 0.146034094830086 0.160080750621355 0.149939565215017 0.143639124231856 0.153989033067191 0.142832860235302 0.145851179497756 0.148709224058922 0.149083453505541 0.145535519067668 0.143787003978679 0.143953938174642 0.145995497499617 0.144496047435319 0.146222729293072 0.164970369621746 0.151761495848614 0.151126746672339 1 1|0 +|/ 9425665 9426543 9426205.6 9425447 9426873 + gene protein_coding_gene FALSE TRUE AT1G27130.1 ATGSTU13 (GLUTATHIONE S-TRANSFERASE 12); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU14 (GLUTATHIONE S-TRANSFERASE 13), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G27140.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.59534355129765 5.8533021874508 0.000316750525457719 1 7.34857920656991 19.1319565320409 0.59534355129765 0.110041793064438
AT1G13000_at 7.95711633548429 8.2217514111013 8.19603846887903 8.06614716406644 8.44325198527831 7.95943901859689 6.38834605518469 6.75807138031785 6.6957087388729 5.9479826841929 6.42312364001543 6.84458699745225 6.53618538623142 7.0602226631504 6.12734924848467 6.6160720427928 6.25892028452419 6.47906713844675 5.79043855337785 0.197404008526541 0.198928617774070 0.198552621026576 0.207088668643454 0.198864763555967 0.194591110622426 0.202303188643907 0.194642582959601 0.198029536180288 0.191333980360633 0.200840594776003 0.191333980360633 0.199901815523714 0.202296357215418 0.195454751378200 0.197594026864389 0.19922978762685 0.194624380515231 0.194300733808235 1 1|0 -|/ 4436439 4437489 4437129.4 4436103 4439474 - gene protein_coding_gene FALSE TRUE AT1G13000.1|AT1G13000.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26440.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.616689398336246 5.85184902019179 0.00031729358047864 1 7.3471762879571 14.0927206860062 0.616689398336246 0.117074425296837
AT1G17650_at 5.22169999717701 5.2758727033397 4.11778352297998 3.79345848223317 4.1837921624551 4.63778022815687 6.28830902927484 6.21086309642372 6.14788498122444 6.34916302249978 6.59231379538895 7.44703997252365 6.10401129000755 6.74215754613124 7.46324066463455 6.95408204356706 5.83205270249287 6.43860125593944 6.25236935652573 0.196811394942235 0.202267163676384 0.214068649438557 0.20195372772724 0.203880708721958 0.204784341723780 0.193476216908816 0.188696902194773 0.199710620409631 0.207554157236942 0.199008990687013 0.197670690359871 0.190679699274068 0.195893524051398 0.196842483330745 0.189084724281351 0.206083046792786 0.195188801791430 0.196352464469232 1 1|0 -|/ 6069683 6070741 6069996.143 6069470 6072005 - gene protein_coding_gene FALSE TRUE AT1G17650.1 phosphogluconate dehydrogenase (decarboxylating) similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G25530.1); similar to Hydroxyacid dehydrogenase/reductase; 6-phosphogluconate dehydrogenase, C-terminal-like [Medicago truncatula] (GB:ABD28508.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) -0.559550492755927 -5.85111452132234 0.000317568453445174 1 7.34646705324245 11.4394415005479 -0.559550492755927 0.0979288269974775
AT1G51070_at 7.91605409092783 8.0914518134887 8.03523661144777 8.02481664676997 7.83151100643028 7.96634788319623 7.72221486565797 7.7624913521025 6.71758175336158 6.93499383205533 7.47357166063447 8.0076334903711 7.66369096975916 7.59779176414624 7.58432032883175 7.7090118801772 7.19508262935567 7.926024755666 7.00019509181959 0.175514486362726 0.175226423835884 0.189100534692207 0.180144366744016 0.172551238562502 0.185513062857939 0.180350282497991 0.178173476644604 0.194095655156750 0.174026048861628 0.169219004541881 0.178721072627757 0.169219004541881 0.180829364998718 0.169219004541881 0.171534791176076 0.169219004541881 0.172211204149644 0.178826185498063 1 0|1 /|+ 18932367 18933143 18932913.8 18931555 18933430 + gene protein_coding_gene FALSE TRUE AT1G51070.1 basic helix-loop-helix (bHLH) family protein similar to ILR3 (IAA-LEUCINE RESISTANT3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G54680.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.425904524436171 5.84968321152175 0.000318104844168739 1 7.34508471712152 15.1832144473926 0.425904524436171 0.0389569516540986
AT4G35920_at 5.38293178455802 6.23287160601918 3.38342447003556 3.81975765325454 5.19100583339725 4.51265572433778 6.78734938262127 6.13903932459684 6.00978412656924 6.36995375928394 6.47666164493315 7.18184013380161 5.6167605782275 6.00199426476363 7.05368239591999 5.62253265389107 5.64679379904139 6.20700812895387 6.66390740904201 0.253638281928211 0.239534667208940 0.246844833988831 0.249464897867036 0.238842439439917 0.242349996233801 0.244018698657498 0.243195029034805 0.266592380666065 0.244137043826899 0.238647642728600 0.239142164689271 0.238647642728600 0.240616010399035 0.243176525088896 0.238647642728600 0.259943271097519 0.246623630747325 0.238647642728600 4 4|0 -|/ 17012275 17013427 17012926 17011791 17015259 - gene protein_coding_gene FALSE TRUE AT4G35920.1|AT4G35920.2|AT4G35920.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17780.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM51833.1); similar to Os03g0157300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049013.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) -1.01540483460804 -5.84746126940983 0.000318939493245288 1 7.34293812446515 11.4680249548059 -1.01540483460804 0.231741399122474
AT1G15350_at 6.51071676596325 6.389893129943 6.30538521836271 6.02325556617423 7.20450885504193 7.18800725978099 5.91750170258294 5.57148413395186 6.16888376313108 5.39675948021867 6.20061016257475 6.05113158245991 6.48162231556377 6.15906800286302 5.74499854525865 5.91950309981946 6.88700306218154 6.20552716790057 5.73900939992492 0.247913531152918 0.243043452070706 0.238852024994508 0.247875018446572 0.241576522417347 0.243805144665361 0.240432116011248 0.242124150330304 0.245557639546520 0.246890795344765 0.239703797774959 0.23775817382744 0.243194639233784 0.251458709751552 0.242589226749546 0.242847780255649 0.244729090309551 0.256280436664506 0.245143722473214 1 1|0 -|/ 5278776 5279159 5279030.444 5278257 5279872 - gene protein_coding_gene FALSE TRUE AT1G15350.1|AT1G15350.2|AT1G15350.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25360.1); similar to hypothetical protein [Glycine max] (GB:AAN03467.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15770.2); similar to hypothetical protein [Glycine max] (GB:AAN03467.1) 0.510427868149593 5.84227227203807 0.000320898031849149 1 7.33792188789426 12.3760443490181 0.510427868149593 0.0800919629189313
AT1G18620_at 9.49886095392645 9.67579698048794 8.47801430137904 8.69127767969772 9.5907518107344 9.28436088792744 9.7236568396845 9.80126059064904 10.6686039154443 10.4919349426873 10.4730974421525 10.5372272706885 10.4413370003337 10.5021668646887 10.2467597833588 10.6519792729083 9.75785216991957 10.1673570549571 10.8418127563439 0.138354322184939 0.125961700673841 0.153610949646716 0.142859038384525 0.129964068018215 0.139464115882300 0.135501020207786 0.128533632692092 0.137212469637803 0.127220216235062 0.130492978618588 0.126433645704558 0.129466543356612 0.130134587302611 0.141203804575233 0.127164716552368 0.144456163273378 0.139725840609092 0.125629372033985 1 1 + 6413672 6414208 6413933 6410025 6414443 + gene protein_coding_gene FALSE TRUE AT1G18620.1|AT1G18620.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74160.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96645.1); similar to Os07g0109400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058723.1); similar to Os07g0603300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060212.1) -0.492010551017453 -5.83983484801288 0.000321822553527941 1 7.3355640642736 19.850333828328 -0.492010551017453 0.0727417253733044
AT3G16270_at 6.95540722530672 7.10519633296133 6.9395239512389 7.27394469780416 6.95452588681453 6.78759477880918 6.80107531758032 6.8911464550757 5.4435174421469 5.96939977946652 6.70102174414524 6.94516691990014 7.10732847245429 6.68370179650794 6.46352441135201 6.95122078816909 6.70152129863822 6.75133445539522 6.17205587185825 0.176682890307307 0.177948868584002 0.187586305859333 0.185104569137123 0.181304255207104 0.195812577555452 0.171330403188593 0.172884084735095 0.215344897044851 0.183862297469795 0.176965982258648 0.183249626868707 0.175745743145877 0.184873161526555 0.177040023494367 0.179114014680172 0.189691449493845 0.184519844847622 0.184004224768176 3 3 + 5515831 5516513 5516056.818 5513279 5516938 + gene protein_coding_gene FALSE TRUE AT3G16270.1 binding similar to Epsin, N-terminal; ENTH/VHS [Medicago truncatula] (GB:ABE85555.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.488567891966029 5.83681508745121 0.000322972000718181 1 7.33264154674314 13.2884319225209 0.488567891966029 0.0714053021828153
AT1G25550_at 8.93460168311774 8.89686259433866 9.14806167433097 8.96570290515799 9.78739410594216 9.32294288874557 8.33870286042083 8.11406875629814 8.53360214859075 7.94047607668829 8.55167739387009 8.90053833600222 8.64351125970414 8.71407794646838 8.40392185282798 8.36085680216838 8.48181822974242 8.68025225249176 8.21202386186134 0.109478947483069 0.109478947483069 0.119178311269898 0.112808400164330 0.114924838873593 0.117264846327297 0.112527933125446 0.120246896991970 0.117373336022035 0.118527749191832 0.113369046631694 0.109478947483069 0.118693567423858 0.116182186396481 0.119850181263976 0.110457877762871 0.118883925448192 0.111662271942642 0.119299708274833 1 1|0 +|/ 8977174 8977859 8977473.6 8976421 8978080 + gene protein_coding_gene FALSE TRUE AT1G25550.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G68670.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os02g0325600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046702.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.549173741723148 5.831357765622 0.000325060695122803 1 7.32735610084669 17.3489334109804 0.549173741723148 0.0949208180726537
AT1G53430_at 6.38888696985354 6.85089206626914 7.07150893024644 6.77806726378763 7.83814711699844 7.33511594005452 6.64749346182885 6.22581165057382 7.1582764835097 7.13568013396032 8.75107719726704 8.31637740654962 7.94678638999768 8.31712621099805 7.74084734448612 7.90970437380805 6.66638645671902 7.05614875709439 7.12078897606028 0.220559564832926 0.219524088721090 0.228133535131628 0.229122888118524 0.216573094321234 0.223220708949936 0.223427732610296 0.216573094321234 0.243876484781865 0.225708125706892 0.220280713310237 0.216675271843190 0.234733844770322 0.229370922932154 0.224644930959479 0.216573094321234 0.238838726351935 0.244825841633378 0.22012206739659 1 1 + 19944076 19944594 19944364.636 19938835 19944756 + gene protein_coding_gene FALSE TRUE AT1G53430.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G53440.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14840.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07650.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to SHR5-receptor-like kinase [Saccharum hybrid cultivar] (GB:AAY67902.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.713623505789324 5.82757596033973 0.000326516781429367 1 7.3236904834662 14.3801430740974 0.713623505789324 0.147899752348330
AT4G16480_at 6.43994269721543 6.62347407288873 5.79166366199004 5.64656056119303 6.32801866745552 6.60826675166858 6.43572066945728 6.8241549863759 7.1420365246226 6.31199231395682 5.91572878749222 6.04972304876572 6.05714163768292 5.68425166962393 6.39688961239643 5.99291026444722 6.14043161901477 6.28146222830564 6.52016377985958 0.196110733135155 0.187005638492791 0.196805719123897 0.192817549196099 0.19306168356466 0.191457388314865 0.192749981559681 0.19044746481247 0.194236104262035 0.189523063583798 0.187005638492791 0.187340906580075 0.190294633380684 0.192990528232023 0.191708087181260 0.187005638492791 0.196327280977864 0.193142918531351 0.192539879732555 4 4 + 9292511 9293027 9292752.182 9291141 9293225 + gene protein_coding_gene FALSE TRUE AT4G16480.1 ATINT4 (INOSITOL TRANSPORTER 4); carbohydrate transporter/ myo-inositol:hydrogen symporter/ sugar porter Encodes a high affinity H+:myo-inositol symporter. The only other compound shown to be transported was pinitol, a methylated derivative of myo-inositol. Identical to Inositol transporter 4 (Myo-inositol-proton symporter INT4) (Protein INOSITOL TRANSPORTER4) (INT4) [Arabidopsis Thaliana] (GB:O23492); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G30220.1); similar to ATINT3 (INOSITOL TRANSPORTER 3), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G35740.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAF91432.1); similar to Sugar transporter [Medicago truncatula] (GB:ABE88239.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAF91431.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.540221271793886 -5.81488551793081 0.000331455290070733 1 7.31137245188634 12.6986660408368 -0.540221271793886 0.092249479931623
AT3G24830_at 10.7404343939718 10.9986166590342 10.2562481951880 10.3528686732471 10.58915013651 10.4200035987406 11.0021070815119 11.1494922326511 10.4453538540180 10.5639787208226 10.2383288577378 10.4121689636012 10.2082697707763 10.0791966097679 10.7125956093166 9.7762031299094 9.86105916437413 10.0873854502489 10.5807291340402 0.107604880472141 0.107058412893610 0.103598444088729 0.107495525290364 0.109792672147237 0.112623142423648 0.109795668361263 0.106900355178837 0.108222753836805 0.105427686345423 0.103802476670197 0.101779831345743 0.106345751679432 0.112629038992718 0.101779831345743 0.109899849143581 0.111420258506415 0.113133860073219 0.102360129631433 3 3|0 +|/ 9064649 9065833 9065160.9 9064539 9066096 + gene protein_coding_gene FALSE TRUE AT3G24830.1 60S ribosomal protein L13A (RPL13aB) Identical to 60S ribosomal protein L13a-2 (RPL13AB) [Arabidopsis Thaliana] (GB:Q9LRX8;GB:Q8RXI2); similar to 60S ribosomal protein L13A (RPL13aA) [Arabidopsis thaliana] (TAIR:AT3G07110.1); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) -0.463107283015634 -5.79792348384432 0.00033818411347853 1 7.29486607461453 21.0395758784036 -0.463107283015634 0.0615078570326476
AT3G20120_at 5.89603165491828 5.83838137701555 6.12596704441604 5.77362611785016 6.38147964487084 6.5336809458503 5.56763360223988 5.6265323081345 4.43223777397047 5.13454175818976 5.12895207732479 6.00960665361939 5.25297819837426 5.59760938059688 5.15149337381151 6.0083199516175 5.76261035393802 5.21931610308946 5.53649206039089 0.208584543250388 0.212005184753634 0.207850118989572 0.208215167269137 0.217116137232792 0.211441477008580 0.210578606665553 0.209833723767030 0.216664760351858 0.218416346660554 0.212620933325888 0.213105742869197 0.209673670364577 0.213150777672748 0.214455633651081 0.207850118989572 0.221232866365772 0.210512167196787 0.220709132120864 3 3 + 7025410 7025725 7025586.091 7023317 7025929 + gene protein_coding_gene FALSE TRUE AT3G20120.1|AT3G20120.2 CYP705A21 (cytochrome P450, family 705, subfamily A, polypeptide 21); oxygen binding member of CYP705A similar to CYP705A20 (cytochrome P450, family 705, subfamily A, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20110.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94648.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.476740300016275 5.79151076747737 0.000340766830991682 1 7.28861305748316 11.2433088997770 0.476740300016275 0.0679340353204978
AT3G07680_at 10.4994054501789 10.4670319474460 10.7479680660567 10.6620843971434 10.4595165633239 10.4175083409965 9.89604848245179 9.8723859799132 9.74759384950443 9.11624516460785 9.78549749857603 9.91692163619169 9.59978309856377 9.69683111572613 10.0006840609667 9.53815518282868 9.78221559016243 9.71196403808868 9.17263690372137 0.0904684595718443 0.0871129466943783 0.0871129466943783 0.0884167617373334 0.091117564296211 0.0880849617391759 0.0889178558803599 0.0900178380036956 0.101784222104170 0.0939721336673053 0.0895250654120424 0.088392699447033 0.0887906312492313 0.0876526571199015 0.0932803284168296 0.0910024524330002 0.0904739027988893 0.0912228142520599 0.0944514390920246 3 3|0 +|/ 2455673 2456630 2456193 2455296 2456885 + gene protein_coding_gene FALSE TRUE AT3G07680.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 protein-related [Arabidopsis thaliana] (TAIR:AT3G22845.1); similar to Os08g0532900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062344.1); similar to coated vesicle membrane protein-like [Triticum aestivum] (GB:ABB90548.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.398282965954732 5.79013934987158 0.000341321963803945 1 7.28727489704302 19.9274929035634 0.398282965954732 0.0179415652985414
AT1G08830_at 11.6543003628019 11.6697334238955 12.3934755993758 12.2656964717565 11.7255989823652 11.4330730773839 11.3127171957863 11.2921490565915 10.3877178223008 11.2461567206224 12.0191452819812 10.7907294869668 10.7619966673440 11.3872839960218 12.6036662284566 10.5348124193523 11.0193534617335 11.7970964021445 11.1819940707422 0.0531249736832691 0.0533416074437843 0.0532046079781952 0.0539931497558338 0.0542919229133249 0.0534694596644161 0.0543098378173818 0.0534149156196565 0.0558194481990683 0.0547395708021648 0.0532642669654398 0.0532798937978898 0.0564067511238902 0.0540799965313005 0.0535030828832787 0.0539518434534355 0.0525077500826058 0.0527050307268878 0.0528008658314526 1 1|0 +|/ 2827744 2828757 2828163.625 2827064 2829318 + gene protein_coding_gene FALSE TRUE AT1G08830.1|AT1G08830.2 CSD1 (copper/zinc superoxide dismutase 1); copper, zinc superoxide dismutase|CSD1 (copper/zinc superoxide dismutase 1) Encodes a cytosolic copper/zinc superoxide dismutase CSD1 that can detoxify superoxide radicals. Identical to Superoxide dismutase [Cu-Zn] (EC 1.15.1.1) (SODCC) [Arabidopsis Thaliana] (GB:P24704;GB:Q9FRQ6); similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn superoxide dismutase [Raphanus sativus] (GB:AAD05576.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) 0.4489368223649 5.77604637244333 0.000347084278276002 1 7.2735053694273 22.8697847033555 0.4489368223649 0.0554207765560921
AT1G60140_at 8.69539414459346 8.99554887932758 8.77365994453532 9.18063597470813 9.40946114799947 9.01727282188978 7.42836273315185 7.54060936989528 6.90701954477056 7.43834442394947 7.65349892020438 6.73454510134454 7.57562677151178 7.75918904518554 6.27754898994869 7.13061058115395 7.3030264256672 7.91722961694035 6.75957193975854 0.214702308958149 0.215927314635793 0.218473886294240 0.217575277023976 0.219098997882646 0.227703488098149 0.216534397165864 0.210518260028104 0.22319664498019 0.214637573252674 0.214183405276897 0.215411669541451 0.213350797182674 0.221001445329062 0.214595180876339 0.213220935309983 0.233420441524054 0.227268814450125 0.216402163929421 1 1 - 22180965 22181487 22181211.364 22180599 22184495 - gene protein_coding_gene FALSE TRUE AT1G60140.1 ATTPS10 (Arabidopsis thaliana trehalose phosphatase/synthase 10); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65494.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.594604742938082 5.77563464856265 0.000347254214833134 1 7.27310259308177 15.7945621608396 0.594604742938082 0.112436712081822
AT1G16180_at 11.2361856911736 11.2940027656090 11.4864336229917 11.6129477077184 11.6640457996082 11.5053299728894 10.7361697021700 10.8864405095311 10.7529071247007 10.4941137907751 10.8871046847994 10.7883309783745 11.0679198681674 10.8691587108479 10.7931892260281 10.9897330584506 10.8909313223437 11.1309061255819 10.5445673063229 0.079062551856932 0.075492470698765 0.0808468061602788 0.0767049867220089 0.0747984176094531 0.082284817360616 0.0755074033472629 0.0755091933791686 0.0786099860453345 0.0784331310581426 0.0753703583140231 0.0743912742412795 0.0777354918828292 0.0779787836378161 0.0748155638999635 0.0743912742412795 0.0809480998848447 0.0773006010366496 0.0806529511104674 1 1|0 +|/ 5541803 5542544 5542240.9 5540899 5542896 + gene protein_coding_gene FALSE TRUE AT1G16180.1 TMS membrane family protein / tumour differentially expressed (TDE) family protein similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT3G06170.1); similar to Os02g0792900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048364.1); similar to Os03g0454100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050476.1); similar to TMS membrane family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97020.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) 0.429476390786136 5.77242808824387 0.000348580821064506 1 7.26996474137653 22.0648721318400 0.429476390786136 0.0448344046491917
AT3G56720_at 8.37926581676096 8.15006812615303 7.9939652492297 8.01089233952649 8.89111978984066 8.2122653395898 6.89241679285233 6.63889668183232 7.04897958334663 6.80717537150701 7.71404005378834 7.55021227154839 7.182605643692 7.7793057383167 7.45147634198903 7.16183887462964 7.3275432126057 7.26729214869373 6.7961843463237 0.188328120262779 0.183595951172531 0.186440273895024 0.188430737161605 0.194174015271359 0.198093090655652 0.170812539106085 0.171268261212681 0.192736810699755 0.177011833083669 0.173603343985579 0.177367866492806 0.169042467963558 0.173788690916304 0.173268571838309 0.18319760653743 0.186016533106359 0.174049057844415 0.1818748620503 3 3|0 +|/ 21023087 21024129 21023485 21022032 21024399 + gene protein_coding_gene FALSE TRUE AT3G56720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44200.1); similar to putative small ribonucleoprotein [Oryza sativa] (GB:AAL31070.1) 0.653537505206248 5.77180631242268 0.000348838700766801 1 7.26935608839415 15.0528124599983 0.653537505206248 0.131559556275990
AT1G08600_at 5.3127318964415 5.70558583625834 6.10018027159796 5.99719109138232 6.49633673330036 6.44980729710390 5.4897432262606 5.47990626498672 4.95437187377959 5.4485581053764 5.13941058842743 5.71964428220975 5.36048336262949 5.09965510596225 5.12934966218804 5.57512360115049 5.94165863569067 5.87991051477836 5.44262488781647 0.237465089598818 0.235265480228983 0.227698988325366 0.234211597060118 0.234393018796207 0.231864860134652 0.235729027365829 0.237434455036359 0.240171818072274 0.227031691990825 0.232530780676336 0.226722926088839 0.230204794759537 0.237497483132218 0.233365130498494 0.227514875285115 0.248256545269778 0.241755405704121 0.228539956987948 1 1|0 +|/ 2732887 2733395 2733183 2724565 2733616 + gene protein_coding_gene FALSE TRUE AT1G08600.1 ATRX/CHR20; ATP binding / DNA binding / helicase similar to ATRAD54/CHR25 (ARABIDOPSIS HOMOLOG OF RAD54), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G19210.1); similar to Os10g0457700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064765.1); similar to SNF2 domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47753.2); similar to putative helicase [Oryza sativa (japonica cultivar-group)] (GB:AAK54297.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.481344944582376 5.76845919552605 0.000350230496569713 1 7.26607849580194 11.2601883728933 0.481344944582376 0.0707627997545627
AT2G34560_at 7.76339080807116 7.4965038160204 6.06200735339816 6.31422839131655 7.74749121152085 6.81655047528087 9.27973993604689 8.97455919323865 8.70784091039697 9.11885314433468 9.33813448083695 9.12181372221646 8.98243857026753 8.97764728045706 9.1780956622872 8.87654778361153 8.56962794118578 8.94601747560414 9.15712831796634 0.181691000762438 0.189099835758757 0.207285330017472 0.205602995806467 0.185490007816224 0.206276131567872 0.180176700920830 0.176097256753893 0.185299228759339 0.188722873740765 0.178614035347461 0.179404133827208 0.176097256753893 0.187337058312943 0.179529520635323 0.180345570849270 0.186206304570016 0.180981311627520 0.182375757938800 2 2|0 +|/ 14568917 14569682 14569299 14567242 14570029 + gene protein_coding_gene FALSE TRUE AT2G34560.1|AT2G34560.2 katanin, putative similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE90089.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.81964808673642 -5.76843963382565 0.000350238648527526 1 7.266059334882 16.5535078091739 -0.81964808673642 0.181057697372340
AT3G23990_at 6.4794856038264 6.91595571074408 6.02493546930827 5.97316585148098 5.79248103085141 5.61410500657194 7.47052300537708 7.49459253799183 5.3109567718712 5.58320168307859 5.16909192394298 6.06955041645303 4.97917163007369 5.32131005395923 6.3472111672607 5.86442937156866 6.10196907496812 5.66439344091193 5.51344759801394 0.194527663449201 0.195349071599623 0.193182748937838 0.192161513941189 0.186404838684777 0.198027294573916 0.197149347503534 0.205255116110378 0.196493539458891 0.188488079890861 0.199465503322520 0.188037135951330 0.188213327000152 0.186404838684777 0.197710996533965 0.188240198824524 0.189891447493171 0.186455193784455 0.193804289714258 3 3|0 +|/ 8671310 8672238 8671771.333 8668925 8672585 + gene protein_coding_gene FALSE TRUE AT3G23990.1 HSP60 (Heat shock protein 60); ATP binding / protein binding / unfolded protein binding mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria. Identical to Chaperonin CPN60, mitochondrial precursor (HSP60) (CPN60) [Arabidopsis Thaliana] (GB:P29197;GB:Q9LIQ8); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT2G33210.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) (GB:Q05046); similar to Chaperonin CPN60-1, mitochondrial precursor (HSP60-1) (GB:Q05045); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.509264253846989 -5.76791415636475 0.000350457708689933 1 7.2655445993013 12.0500769782924 -0.509264253846989 0.0821934226954784
AT4G08500_at 5.86582887436893 5.78928470600591 6.44319833855371 6.45586513631523 5.99416237036211 5.71729493336088 5.28494551912732 5.2967572491339 4.82032639307706 4.67622161228649 4.97655471308056 4.90627780835535 5.17159938962176 5.19766610911785 4.72948653117039 5.2030838138754 5.53414214554411 4.85206558517132 4.87495386912804 0.248185969786 0.245334864412239 0.257206012317714 0.243295173911632 0.240050553930242 0.245559974393390 0.244420382664414 0.249984293958354 0.256555537404970 0.243386508897357 0.248573016997836 0.240050553930242 0.241142715641666 0.253867766927563 0.253068538870497 0.242996787723093 0.240761949010805 0.240050553930242 0.241030900545023 4 4 - 5404285 5405371 5404744.364 5403750 5407298 - gene protein_coding_gene FALSE TRUE AT4G08500.1 MEKK1 (MYTOGEN ACTIVATED PROTEIN KINASE KINASE); kinase Member of MAP Kinase Kinase gene family. Mediates cold, salt, cadmium and wounding stress signalling. Phosphorylates AtMEK1. Identical to Mitogen-activated protein kinase kinase kinase 1 (EC 2.7.11.25) (MAP kinase kinase kinase 1) (AtMEKK1) (ARAKIN) (MEKK1) [Arabidopsis Thaliana] (GB:Q39008;GB:O81470;GB:Q39020;GB:Q8W4N5); similar to MAPKKK9 (Mitogen-activated protein kinase kinase kinase 9), kinase [Arabidopsis thaliana] (TAIR:AT4G08480.1); similar to MAP3K beta 1 protein kinase [Brassica napus] (GB:CAA08997.1); similar to ARA.KIN gene product (GB:AAA99196.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.437142497325261 5.76016379057792 0.000353706128073242 1 7.25794726594567 10.7868472093148 0.437142497325261 0.0498008363933405
AT2G35155_at 6.2170887214223 6.97037002602072 5.52739679074741 5.22948307540956 6.33523264377463 6.39652060772154 6.75002569084267 7.12248920934746 7.41022836295506 7.23185636479939 6.59924593792474 7.057849355819 7.07165960911907 7.15997548093016 6.41027439673081 6.65784949762105 6.33194114211623 7.11578198122172 7.44797239408132 0.266073020806243 0.244834867039011 0.262407996199505 0.269143240230888 0.246221268873411 0.255637774505163 0.244834867039011 0.247505887731885 0.252566307773411 0.244834867039011 0.249151651849254 0.244834867039011 0.250828344249627 0.244834867039011 0.256145170186352 0.244834867039011 0.273516037836624 0.246001127983847 0.245794191147659 2 2 - 14826313 14826862 14826562.273 14826073 14829044 - gene protein_coding_gene FALSE TRUE AT2G35155.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45030.2); similar to Os08g0407200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061775.1); similar to OSIGBa0126B18.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66916.1); similar to OSJNBa0008M17.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD41791.2); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.727807665627455 -5.75939653746722 0.000354029494220162 1 7.25719461183504 13.4005381202261 -0.727807665627455 0.154656135852611
AT3G48880_at 7.57775052744263 7.08351621601239 7.40736028488268 7.46129442021177 8.14869361856839 8.17877352228287 6.86340146308765 7.01484360536267 6.58145479532346 6.40270735884344 6.78175924181318 6.63095548649688 6.92153750527798 7.11838640712111 7.14695905123043 7.0019474368767 7.36395278552916 7.01585127855127 6.83179207431286 0.191089329890137 0.188507051218546 0.195639204756918 0.186015175014029 0.186369328911292 0.198628235198077 0.185192756010169 0.190123539734426 0.194766206235663 0.191467270794794 0.188786535058001 0.187369183200102 0.186440079230969 0.185158911149998 0.194420432667675 0.183016277694210 0.187125228811436 0.181969053599439 0.191357731655568 3 3 + 18139194 18139784 18139583.636 18137855 18140174 + gene protein_coding_gene FALSE TRUE AT3G48880.1|AT3G48880.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G11580.1); similar to Os10g0502900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064994.1); similar to putative Rhizobium-induced nodule development associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13618.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.528251540731131 5.74881314996972 0.000358523098378907 1 7.24680247295299 14.2684475698674 0.528251540731131 0.090090863262355
AT3G14280_at 6.17059900079925 6.63214497595308 7.44428748090546 7.85610310332334 8.64496759953637 7.45630980533697 6.58846363280992 5.82647879635444 3.52983910307068 3.80890053241411 3.68161495115026 2.73132974459767 4.47341231381975 4.74408264111351 2.858500504705 4.43803435692811 6.23928084595676 4.78621149538516 3.26938548630873 0.340394349672175 0.329168803120213 0.328685026914172 0.336050808337628 0.335621718545409 0.33447314838984 0.334581147756617 0.333553470162127 0.336602226455572 0.326800489270899 0.327707338402683 0.336140932866007 0.326800489270899 0.329631132324908 0.344699907524542 0.326800489270899 0.338708021980406 0.326800489270899 0.331836280813899 3 3|0 -|/ 4761707 4762264 4761972.2 4761439 4762402 - gene protein_coding_gene FALSE TRUE AT3G14280.1 similar to hypothetical protein MtrDRAFT_AC157534g12v1 [Medicago truncatula] (GB:ABE86457.1) 1.12700602261944 5.74619646127551 0.000359643708903733 1 7.24423015574468 10.9674693313631 1.12700602261944 0.266759430102139
AT4G17390_at 8.81957118244374 8.98475447456289 8.17546241245219 8.15652091585874 8.10303429562326 8.07571361072185 8.99180320664923 9.29954956984494 8.93711957646946 9.08973555104718 9.17683196649077 9.6082348630826 8.73391691770064 8.81336807559846 9.92680031393558 8.662970838243 8.42011695423207 8.51595755882273 8.97226824101578 0.118037788741851 0.118063596012477 0.117507809258331 0.119906817481388 0.113479975635687 0.125133944241789 0.117921639012810 0.116852018972823 0.120274021304054 0.113425221257608 0.110267835509307 0.120948386121302 0.119075926232442 0.110267835509307 0.112823753013533 0.114226589688988 0.127304150677105 0.122858749459139 0.111900923144103 4 4|0 -|/ 9714431 9715358 9714817.9 9714104 9715624 - gene protein_coding_gene FALSE TRUE AT4G17390.1 60S ribosomal protein L15 (RPL15B) Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15 (RPL15A) [Arabidopsis thaliana] (TAIR:AT4G16720.1); similar to 60S ribosomal protein L15 [Brassica oleracea] (GB:ABD65137.1); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Ribosomal protein L15e; (InterPro:IPR000439) -0.45683495160438 -5.74014441837899 0.000362250225659803 1 7.23827630888695 17.5667924462816 -0.45683495160438 0.0607169246804937
AT1G70610_at 8.74669473943319 8.78216433408512 8.51065138118655 8.26981709471143 8.98297232668877 8.27926297569637 10.2589998500724 10.1126357627485 9.69270406190539 9.9529332472975 9.57983445513701 9.53607607395621 9.34335040310942 9.62701781443877 8.92221140921433 9.59646067924905 9.1982530892427 9.5424687422247 9.60986851993675 0.118621455785542 0.117536152301375 0.120724878489869 0.120755139957460 0.114168494735630 0.126867897847445 0.121200278274378 0.122785471242526 0.125218874272485 0.117007525846228 0.115038703257712 0.114168494735630 0.114168494735630 0.120954662718955 0.121879097021057 0.115467034936356 0.129419241417112 0.124776999885349 0.114168494735630 1 1|0 +|/ 26629005 26629515 26629372.5 26625624 26630142 + gene protein_coding_gene FALSE TRUE AT1G70610.1 ATTAP1 (Arabidopsis thaliana transporter associated with antigen processing protein 1); ATPase, coupled to transmembrane movement of substances member of TAP subfamily similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to PREDICTED: similar to KIAA1520 splice [Gallus gallus] (GB:XP_415125.2); similar to Os01g0911300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045160.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.649036960036186 -5.73859140149199 0.000362922409620001 1 7.23674749260823 18.5779219879285 -0.649036960036186 0.131326547497656
AT1G77940_at 10.5170402265342 10.8031843633232 10.1413745605930 10.1845165471688 9.7935742101387 9.87626378060597 10.9163986367057 11.0314717662416 10.6332799666013 10.3669207584800 10.4511279249778 10.9642411318937 10.2191715595818 10.4075638600769 10.8504269731166 10.1135436469570 9.70639266966096 10.0502132636971 10.2609783996027 0.0848182202484195 0.0854229455368807 0.0922335549859648 0.0864916541154797 0.0912635316286883 0.0890436095864529 0.0848965370588427 0.084906163432141 0.0919819350166471 0.0881944847204087 0.0877498229615295 0.0848182202484195 0.0897990388763997 0.0877397053851113 0.0906016278039566 0.0848182202484195 0.0944212188438815 0.092322915220215 0.0870443331737876 1 1|0 -|/ 29309018 29310005 29309514.556 29308791 29310276 - gene protein_coding_gene FALSE TRUE AT1G77940.1 60S ribosomal protein L30 (RPL30B) Identical to 60S ribosomal protein L30-2 (RPL30B) [Arabidopsis Thaliana] (GB:Q8VZ19;GB:Q9SH07); similar to 60S ribosomal protein L30 (RPL30A) [Arabidopsis thaliana] (TAIR:AT1G36240.1); similar to 60S ribosomal protein L30 (GB:O49884); contains InterPro domain Ribosomal protein L30e; (InterPro:IPR000231); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.446574693195307 -5.73713531196585 0.000363553879696573 1 7.2353137230865 20.7908420965672 -0.446574693195307 0.0557598906267893
AT1G09415_at 7.95613690388867 8.38394423167327 6.8344990555787 7.11357087464775 7.86403521903915 7.35155884943253 5.4230066174978 5.5369591924344 7.67734430705909 6.84463534162862 5.24182090458002 6.40568843647148 5.37307024615933 6.06205304248551 5.83511452267938 6.08426738594629 5.69706689399834 5.16662147310846 7.88054758875788 0.224785211140673 0.228030232745959 0.220872821241768 0.222981779346356 0.225108951788253 0.233561234807303 0.224638851826463 0.225619863366158 0.229553142184243 0.223219790673518 0.230357837929061 0.235060226720191 0.219843371614205 0.234623486698084 0.228521231889969 0.219843371614205 0.227668222457567 0.225864272568301 0.219843371614205 1 1 - 3037933 3038170 3038057.364 3037756 3038410 - gene protein_coding_gene FALSE TRUE AT1G09415.1 NIMIN-3 (NIM1-INTERACTING 3) encodes a kinase that physically interacts with NPR1/NIM1 similar to NIMIN-1/NIMIN1, protein binding [Arabidopsis thaliana] (TAIR:AT1G02450.1) -0.634195976334463 -5.73465155256022 0.000364633798387687 1 7.23286720960638 13.6583248391876 -0.634195976334463 0.126757952982461
AT1G02850_at 7.29295273982937 7.3559145714599 8.6092681342361 8.50900657602014 8.06040317259447 7.3905249879452 5.38526203817757 5.90912934190057 2.86130369809961 3.33520998710337 2.20844894911865 2.09290761167235 2.77957117569706 2.56401145828232 2.04305897874271 2.79946329057546 3.55075784853095 3.21946760091439 2.52324417685272 0.335582355172242 0.323559176339383 0.335557621379894 0.333579011132706 0.322755189117023 0.334585425863762 0.319080443742109 0.320729894308411 0.324236467308976 0.323498201621904 0.324716502432878 0.328131179573737 0.320583374334963 0.324415835830408 0.319080443742109 0.322750191004909 0.322601657732176 0.320606356420910 0.325515984382293 1 1|0 +|/ 632183 633058 632767.222 630505 633259 + gene protein_coding_gene FALSE TRUE AT1G02850.1|AT1G02850.2|AT1G02850.3|AT1G02850.4 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G22100.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G22100.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.703555477515147 5.72692983090582 0.000368013599393908 1 7.22525461867096 10.0959561043756 0.703555477515147 0.148584366155572
AT1G32440_at 6.6566844933698 7.0750576619705 6.97182950382406 6.6672604678321 6.55502200542782 6.98205426991614 8.76904723283342 8.49002198866553 7.25822752048183 7.91213185578486 7.16268351290606 7.53436065425233 7.0023658593422 6.95209726739863 7.24602354386626 7.49899954436095 7.45062375051667 7.10478804731672 7.48105012934991 0.206775961263055 0.197657592272969 0.197414836103253 0.197216135329564 0.193147728938093 0.196494557331175 0.199433244746538 0.201429545002534 0.208656016141058 0.193203729672721 0.195404502804851 0.188500694197404 0.200972906604800 0.198729858507937 0.193406297724966 0.188500694197404 0.204373779931342 0.194126025880026 0.20042675730607 1 1|0 +|/ 11714056 11714854 11714459.333 11712142 11715092 + gene protein_coding_gene FALSE TRUE AT1G32440.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G52920.1); similar to Pyruvate kinase isozyme G, chloroplast (GB:P55964); similar to Pyruvate kinase isozyme G, chloroplast precursor (GB:Q40546); similar to Pyruvate kinase [Medicago truncatula] (GB:ABE87102.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -0.630069172585168 -5.72580853310551 0.000368507232876293 1 7.22414832940899 14.6681035068302 -0.630069172585168 0.125748959865655
AT4G33940_at 7.17132006956009 6.96712453791719 7.42762020315417 7.80265786386586 7.93297990677438 7.68793323134315 6.79757770290111 6.71081679027597 6.21259673818485 6.49597939925941 6.70764265320561 6.39521318090223 6.63170957499319 6.633435002179 6.51415121632396 6.59055593124268 6.50111577438727 6.6230179512188 6.32080465672553 0.224918532492944 0.226221953721301 0.223652143131909 0.220958960124826 0.226274055984844 0.237029350391748 0.223509475457080 0.229329970105554 0.233691817650028 0.228403781027445 0.233738990891428 0.221325724445109 0.225942419191370 0.230586502980284 0.242081007309004 0.229169015278907 0.245476482178683 0.221285992133318 0.220958960124826 4 4|0 +|/ 16266281 16267543 16266981.556 16266028 16267791 + gene protein_coding_gene FALSE TRUE AT4G33940.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72175.1); similar to PREDICTED: similar to RNF170 protein [Gallus gallus] (GB:XP_424879.2); similar to Os03g0839000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051839.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.516283127643731 5.72140456931025 0.000370453022924119 1 7.21980125326296 13.7711198341973 0.516283127643731 0.0865142464595248
AT3G25585_at 7.63499460139089 7.79735018173699 8.47069619993143 8.50522741828665 9.13985408138415 8.86345072255643 8.80656420132696 8.88054648790508 6.77303678169589 7.69131352866663 8.08441641808333 7.72506945114141 8.24170989681869 7.91845395826852 6.93938288801337 7.86102234127831 8.01202756941697 7.60450383830029 7.63579074729341 0.196098397031616 0.191555570772302 0.201345986014201 0.199284822012403 0.200700832370065 0.196404482124904 0.201987993783294 0.190386537054232 0.202995131312261 0.196447163132625 0.188372863717154 0.191387437555120 0.193865023588052 0.191469873731377 0.205020008935627 0.188372863717154 0.20016035680924 0.204725355353274 0.203238362656648 3 3|0 +|/ 9298083 9299332 9298632.375 9296546 9299983 + gene protein_coding_gene FALSE TRUE AT3G25585.1|AT3G25585.2|AT3G25585.3|AT3G25585.4 AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE); phosphatidyltransferase aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds similar to AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1), phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT1G13560.1); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAB53764.1); similar to aminoalcoholphosphotransferase [Brassica rapa subsp. pekinensis] (GB:AAL46934.3); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAD56040.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462)|similar to AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1), phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT1G13560.1); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAB53764.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.448276423364744 5.72137928810292 0.000370464225210821 1 7.21977628914391 16.0948539773400 0.448276423364744 0.0572452520912776
AT2G16660_at 10.9336415581417 11.0662414980527 10.3374415931244 10.4937006288570 11.3487100009854 11.3234785172752 8.72883893229084 8.62925237583437 11.3704857189067 10.6332636345419 11.7374122139832 9.66659964003066 9.95831111460527 10.9499477096537 10.5592582204835 9.27854922950066 10.0371583636258 10.7997792895637 9.7217864115116 0.100818094312573 0.101425620513707 0.105654306944682 0.103821220028733 0.10141774394057 0.101797756001137 0.108123389523544 0.102770348663278 0.108651557540517 0.100803397095368 0.101630823041833 0.102530151328084 0.0999406809676818 0.102451598349996 0.103731945140494 0.108098273970136 0.108104927863513 0.0990927422968424 0.105952754612020 2 2 - 7226113 7227474 7226602.273 7225788 7228707 - gene protein_coding_gene FALSE TRUE AT2G16660.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT4G34950.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os09g0536700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063787.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.417268739170659 5.71665191138655 0.00037256548252203 1 7.21510630279981 20.8319409185706 0.417268739170659 0.039672093911364
AT4G13180_at 7.74033556764346 8.1824395114667 8.80463821308735 9.06823663029431 8.11892732425743 7.6441584288431 6.89032436055972 7.15587819541239 5.15942275803224 5.39043772364232 5.46528361835428 5.55353212814421 6.21265711044064 6.16191140636392 4.95588897306808 6.31551115770134 6.34299982861902 5.62106103027931 5.84167086898158 0.243314204430411 0.247882211663266 0.246115213156831 0.248514849809201 0.245035367581599 0.239833248612275 0.237477262323692 0.239762530211583 0.249194091689472 0.246179941144394 0.238834739439498 0.238306900140181 0.240427861523855 0.240114423886263 0.242920702273199 0.242016147272693 0.250277399228994 0.242310508426870 0.238601287762754 4 4 - 7657422 7657920 7657701.909 7657192 7658193 - gene protein_coding_gene FALSE TRUE AT4G13180.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03980.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.64075380670964 5.71340983344831 0.000374014072801738 1 7.21190139513097 13.5968419990323 0.64075380670964 0.129602157748057
AT2G30050_at 5.68831080802707 5.85162451474018 5.16112465247148 5.33728075954844 5.69211245701728 5.98974486250223 5.37715501324408 5.42851155752865 4.67078792439849 4.49705162964577 5.65175046523212 5.85603503477549 5.38575589545746 5.5074128576967 5.39165268523189 5.49517928296728 5.60445625323781 5.5257245244171 4.56058723262648 0.258484057250173 0.264355808817655 0.263994156736520 0.261630189018279 0.258193186249461 0.258748298339719 0.257912410376885 0.260710409293414 0.272439201648386 0.268248743680917 0.265156418823247 0.257177490685979 0.257177490685979 0.274261172585040 0.259682831544687 0.257177490685979 0.258756067400748 0.275043366607777 0.261857884252043 2 2 + 12832930 12833427 12833112.909 12831528 12833761 + gene protein_coding_gene FALSE TRUE AT2G30050.1 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G01340.2); similar to protein transport SEC13-like protein [Solanum tuberosum] (GB:ABC01897.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.467384411076634 5.709043907962 0.000375974543777862 1 7.2075827098495 10.6299271466852 0.467384411076634 0.0667831567425834
AT3G15020_at 6.93289157290955 6.86645608859058 7.56891882819443 7.62003890156084 6.83510396144327 6.61877646237046 8.57444679351517 8.59304016187655 5.9893605566391 7.04445873385842 7.53972977886007 8.15457657343209 7.59880279600369 7.91952730725853 8.16955123350815 7.33101856098929 7.38703935533206 7.46246268775479 5.80431258259842 0.201807156565610 0.204922038023318 0.202464388974601 0.200092885511712 0.202816329119596 0.223816948364118 0.206785104709252 0.206348389166531 0.216160721576747 0.205068794647760 0.205381325999538 0.199289421493384 0.204100136893331 0.201855638192469 0.210081888183480 0.199460403309379 0.210989584273838 0.201579229112373 0.200773692669382 3 3|0 +|/ 5056929 5057895 5057390.6 5056075 5058255 + gene protein_coding_gene FALSE TRUE AT3G15020.1|AT3G15020.2 malate dehydrogenase (NAD), mitochondrial, putative Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana] (TAIR:AT1G53240.1); similar to Malate dehydrogenase, mitochondrial precursor (GB:Q43744); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097)|Identical to Malate dehydrogenase 2, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 2) [Arabidopsis Thaliana] (GB:Q9LKA3); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana] (TAIR:AT1G53240.1); similar to Malate dehydrogenase, mitochondrial precursor (GB:Q43744); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) 0.417481064889818 5.70722583580317 0.000376794238994042 1 7.20578335645302 14.4385670101448 0.417481064889818 0.0402776079720788
AT2G39840_at 7.80099217377865 8.1919207617797 8.10532595837554 7.95903769124563 8.2810171275988 8.01530811250841 7.75569587284923 7.58485741131451 6.81067758824125 6.55575281354348 7.27670398085192 7.5551512247309 7.60345764490077 7.66341335538876 6.75132861180933 7.49058553239392 7.69660163169894 7.08580395060433 6.42557566399079 0.216189526531692 0.215165027960915 0.214719502571886 0.219808120465868 0.220124873390251 0.215546912778603 0.222611564888462 0.220717326984094 0.222379496651049 0.213916384560891 0.214091622657799 0.211498471303832 0.209487020967607 0.228478440807251 0.219310052340964 0.211595819822911 0.224545307092117 0.217914636414115 0.210469732867343 2 2|0 +|/ 16635311 16635790 16635492.8 16634336 16636367 + gene protein_coding_gene FALSE TRUE AT2G39840.1 TOPP4 (Type one serine/threonine protein phosphatase 4); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 4 (EC 3.1.3.16) (TOPP4) [Arabidopsis Thaliana] (GB:P48484); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to serine/threonine protein phosphatase 1; PP1 [Malus x domestica] (GB:AAD56010.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.524925526895214 5.69821460987658 0.000380885971173302 1 7.19685663160358 14.9556274370842 0.524925526895214 0.0905875426116825
AT1G01120_at 10.0258327126906 10.1741761337321 11.0384653019140 10.9181448070466 11.3697876496158 11.2976134074185 11.4462031570319 11.5894502310135 11.5319359087999 11.3983190749337 12.4387085163023 12.1348980630810 12.2660664663711 12.3130714167863 11.5885882918858 11.6594393566988 11.4735107864633 12.0183894626534 11.5443324782895 0.0814865333657745 0.077816259543462 0.0843651427685743 0.084439114434093 0.0784947901054343 0.0847479085690737 0.0785390292598404 0.0796790243916337 0.0881084821712139 0.078857519375148 0.0817237389478955 0.077816259543462 0.077816259543462 0.0812272141996818 0.0826019055160081 0.077816259543462 0.0871896106438957 0.0804174059552414 0.0788735572586684 1 1 - 57417 57967 57686.364 57269 59167 - gene protein_coding_gene FALSE TRUE AT1G01120.1 KCS1 (3-KETOACYL-COA SYNTHASE 1); acyltransferase Encodes a condensing enzyme (3-ketoacyl-CoA synthase) which is involved in the critical fatty acid elongation process in wax biosynthesis. Identical to 3-ketoacyl-CoA synthase 1 (EC 2.3.1.-) (EC 2.3.1.119) (KCS-1) (Very- long-chain fatty acid condensing enzyme 1) (VLCFA condensing enzyme 1) (KCS1) [Arabidopsis Thaliana] (GB:Q9MAM3;GB:Q56YX9;GB:Q9ZTK3); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65207.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABD32702.1); similar to fatty acid elongase 3-ketoacyl-CoA synthase [Brassica napus] (GB:AAT65206.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.421071061952126 5.69558857189153 0.000382087496526411 1 7.19425262509448 22.7215157745768 0.421071061952126 0.0431637456127362
AT2G24580_at 4.83654306114582 5.13755826718054 4.86008267005066 4.68833413442758 4.39113447613475 4.5252630533303 5.5351640310398 5.1425128092442 4.85144787903367 5.90133074706189 4.60089945816052 4.86332625644841 4.555798437425 4.86555751118901 4.38119657934416 5.20077229166068 5.27481178468952 4.74173149363578 5.23258389872669 0.198872518290149 0.199503594321553 0.201636345700385 0.193065485800326 0.196668693655939 0.203516450609519 0.194273181667222 0.218887588428031 0.215532039702112 0.201158599039376 0.199544320304454 0.191887491880623 0.195731121316232 0.192063983281038 0.215547230002283 0.193183069633847 0.196282838018845 0.2006118490814 0.195226227933802 2 2 - 10452081 10452551 10452340.182 10451869 10453321 - gene protein_coding_gene FALSE TRUE AT2G24580.1 sarcosine oxidase family protein Identical to Probable sarcosine oxidase (EC 1.5.3.1) [Arabidopsis Thaliana] (GB:Q9SJA7); similar to LOC558601 protein [Danio rerio] (GB:AAI16494.1); similar to Os09g0498500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063566.1); similar to Unknown (protein for IMAGE:7902439) [Danio rerio] (GB:AAI24588.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Sarcosine oxidase, monomeric; (InterPro:IPR006281) -0.532341703519191 -5.69203731611691 0.000383718941723126 1 7.1907293000574 9.95905701357415 -0.532341703519191 0.0935573223619571
AT1G02660_at 4.86936644563344 5.3737829183995 4.50353093902023 4.5256028600155 6.19825233938423 6.21260866034135 4.32043880382476 4.4175740568335 4.61759755851161 3.73394796015833 4.79193129245136 4.4482004331343 4.75202247095931 4.98704190110474 4.11662186093959 4.83142401040861 4.58417731589844 4.62715169339867 4.29989684602540 0.210350142484925 0.205201476198018 0.205201476198018 0.212410511076129 0.218555737683912 0.206804709103155 0.223944167166354 0.210452028693356 0.222232139747107 0.211152854467598 0.212243506277605 0.207560420855818 0.211774110817141 0.21818266731647 0.205201476198018 0.206622588574379 0.209717199501241 0.209956394275347 0.209878777905380 1 1 - 572191 572734 572445.909 571955 574981 - gene protein_coding_gene FALSE TRUE AT1G02660.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT3G62590.1); similar to Lipase, class 3 [Medicago truncatula] (GB:ABE90993.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.519941030452979 5.68945696895141 0.0003849091266235 1 7.18816790332109 9.48237904152423 0.519941030452979 0.0890121108005438
AT3G26280_at 10.6412227378913 10.8164377641561 10.6799079176368 10.8204819628039 11.1526470376478 10.9098544736735 11.0403372193119 11.1216525500898 10.2334267618798 10.6882507453025 9.4748451164056 8.3388568555145 10.5057733430468 9.90980158489138 8.25652203597986 10.1641723133440 10.6112619415369 9.64050082808662 10.5688398172834 0.128335893917184 0.127764303405657 0.127690914377709 0.134160019680876 0.126316783215163 0.132361998190004 0.129168381756410 0.128782195695065 0.140518733534199 0.125468087531521 0.129917027120181 0.145133515355026 0.128557320086716 0.127512094402299 0.144054015189020 0.125427587576589 0.132763905708485 0.142621278087015 0.124999666786527 3 3 - 9631603 9632160 9631864.818 9631437 9633246 - gene protein_coding_gene FALSE TRUE AT3G26280.1 CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B4 (EC 1.14.-.-) (CYP71B4) [Arabidopsis Thaliana] (GB:O65786;GB:Q9LTL1); similar to CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26270.1); similar to CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26220.1); similar to CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26230.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.449156037863151 -5.68916866623639 0.000385042356565106 1 7.1878816476652 20.9525956381544 -0.449156037863151 0.0589458275987599
AT1G32920_at 6.03141873258542 6.61768856499622 6.98141911899666 7.59013944987132 6.33550931301128 5.09518323530684 4.05844830951259 4.21442891476622 5.30532164583148 4.85035991519681 6.29266393669713 6.73960621204032 4.62118699873116 6.00587027199534 6.70257042051391 6.10919499240923 5.47109412030624 5.96078688919822 5.04795826568904 0.248292101026509 0.245763876742870 0.255257332349828 0.250119328747407 0.248235380582676 0.271334033604633 0.258661719590624 0.251751477215494 0.263480258946488 0.255087387092635 0.247877841500529 0.245763876742870 0.262608577531127 0.254815710644705 0.253549984557443 0.252004077990209 0.251566105928143 0.259192516707592 0.253652402524681 1 1 + 11928907 11929092 11928994.364 11928787 11929282 + gene protein_coding_gene FALSE TRUE AT1G32920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G32928.1) 1.09502921841437 5.68870228123191 0.000385257988288311 1 7.18741854425965 11.3934052911186 1.09502921841437 0.26113435482404
AT1G35510_at 5.94816383283847 6.1106418677765 5.28002692250176 5.78332554751608 5.99407312582839 6.04750518919666 6.74431876982382 6.6286171346689 7.01767697040065 6.54424040717225 6.61839391958427 6.65760320774475 6.394042207777 6.6399988876947 6.1110475737925 6.4952399783766 6.29456865348805 5.9767826476329 7.08835044373088 0.202565748624046 0.196349466926736 0.197622443231341 0.199382256935744 0.201171039588091 0.197620120037184 0.193897914188320 0.201238822745102 0.207998111754809 0.201701743702950 0.192566813397634 0.198874929255865 0.202759882477703 0.203673950482128 0.198246819761833 0.192566813397634 0.199296809660097 0.205624005229574 0.199173527644281 1 1|0 +|/ 13073301 13074625 13074066.6 13071143 13074927 + gene protein_coding_gene FALSE TRUE AT1G35510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01480.1); similar to Growth regulator protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96586.1); similar to Os12g0174100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066285.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.533332838803058 -5.68561467122734 0.000386688868447149 1 7.18435172673384 12.7080251695751 -0.533332838803058 0.0941440388951877
AT2G46250_at 4.39188233090494 4.58036180064692 4.16847394265228 4.01789350030843 5.62941379212731 5.02998896731832 5.34762934901402 5.02757679218357 6.20683940228052 6.64521924180214 6.50540995299602 5.77157817364246 5.47821398746637 5.45942148056450 4.9933930145085 6.77368853300087 5.80209980907659 4.97855857115886 7.66799384347733 0.242834918990634 0.243375077503881 0.247380664427385 0.245936934039391 0.242166660181166 0.242169236285933 0.249414841662257 0.245638481907659 0.255285909843913 0.243694839353639 0.245389221886487 0.242166660181166 0.245286692129509 0.249192640392532 0.243844676505137 0.242166660181166 0.261652339644792 0.242166660181166 0.244265347874698 2 2 + 18999696 19000224 18999963.455 18998244 19000400 + gene protein_coding_gene FALSE TRUE AT2G46250.1 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41620.1); similar to unnamed protein product; gb|AAF24581.1 gene_id:MBK23.17 strong similarity to unknown protein [Medicago truncatula] (GB:ABE79740.1) -0.622571036568669 -5.6847410344685 0.000387094788114525 1 7.18348367899177 11.0543090274720 -0.622571036568669 0.124784621828236
AT3G48090_at 7.87717579499331 8.2315142389542 8.94496747952086 8.95276186782007 7.43438228996026 6.40785570216685 5.39197196120239 5.10736968644244 5.04787304777137 5.48170894922746 5.79338813192966 6.51282743674418 4.99174731788866 5.76944715726887 6.01977594710363 5.94647474783687 5.2279462330416 5.77900182866 5.46481831030687 0.24715504708817 0.2624651593239 0.259993261283936 0.257548131941045 0.25173962282918 0.256899443212512 0.245045854458537 0.256745639063702 0.260021994846351 0.247019382739053 0.250007016577682 0.249319001792729 0.247350134010168 0.256231654007182 0.244822338345262 0.244822338345262 0.260121220075772 0.254263740193559 0.252569496566409 3 3 - 17766562 17767111 17766865.727 17766359 17768742 - gene protein_coding_gene FALSE TRUE AT3G48090.1|AT3G48090.2 EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1); signal transducer/ triacylglycerol lipase Component of R gene-mediated disease resistance in Arabidopsis thaliana with homology to eukaryotic lipases. similar to lipase class 3 family protein / disease resistance protein-related [Arabidopsis thaliana] (TAIR:AT3G48080.1); similar to EDS1 [Lycopersicon esculentum] (GB:AAX73302.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.853296622713103 5.68183963656895 0.000388446215049201 1 7.18059991117098 12.8367713122131 0.853296622713103 0.194282034436473
AT1G51440_at 6.46064670197836 6.51813319489617 7.82485823616775 8.18738787455582 8.22403601813351 8.15187176873454 8.08861303770905 8.4372015832201 6.45465972648287 7.72540469472326 7.63515167180374 7.14057925661429 7.85044018786845 7.57526817023202 6.80493952963793 7.69014832250269 7.88265230175154 7.10424773379493 7.25806427385003 0.185195151307556 0.194204324234516 0.185168675826159 0.185687078499070 0.186918447786110 0.192544921247292 0.180076854088155 0.191123366297007 0.192072182845932 0.185307821901921 0.186213182937393 0.182437148435915 0.181355101465315 0.188449695513765 0.183068298877742 0.185837051003464 0.188721649531082 0.180834302689327 0.183795097193632 1 1 + 19075643 19076143 19075928.909 19074585 19076362 + gene protein_coding_gene FALSE TRUE AT1G51440.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G30550.2); similar to Os01g0651800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043734.1); similar to Lipase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96672.1); similar to Os05g0390000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055438.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.517637671685316 5.67935623067013 0.000389607043005257 1 7.17813045805513 15.0398291994883 0.517637671685316 0.0884873169187196
AT4G04320_at 8.63553633600061 9.02958052825969 9.22863560748397 9.24620016524529 9.3085745273412 9.00725604897774 8.67874773925844 8.54494901949043 7.4375130030638 7.98409598064285 8.33357061708882 8.3313220166232 8.3922886168764 8.0616178579778 8.01046652779575 8.356032189642 8.57708636954771 8.32095322051176 7.78570248335088 0.211735873564073 0.211735873564073 0.215366941343028 0.216553665750836 0.220887617265364 0.221063491246942 0.219579624921504 0.212591622454559 0.258632015434671 0.213651767908835 0.217965354425119 0.216484224458850 0.211735873564073 0.228273710173373 0.217566617954593 0.212964822414366 0.216043969712247 0.215997051388828 0.224875074955165 4 4|0 +|/ 2115460 2116150 2115800 2113402 2116691 + gene protein_coding_gene FALSE TRUE AT4G04320.1|AT4G04320.2 malonyl-CoA decarboxylase family protein similar to Os09g0394100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063091.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF98885.1); contains InterPro domain Malonyl-CoA decarboxylase; (InterPro:IPR007956) 0.518804934749256 5.6784327081824 0.00039003969510709 1 7.17721185661297 16.9767788295207 0.518804934749256 0.088963270928187
AT3G03250_at 9.54377866185661 9.5408968925715 9.25001689316026 9.34363645475755 9.06567212115918 8.9020796055319 10.5560980702430 10.3291087315174 9.24083427751232 9.4324428782206 9.06722718476042 9.30875438853079 9.16536974867818 9.4064207043376 9.53575399767943 8.9749755846635 9.2395582562618 9.20779846302911 9.0798887827048 0.131481128168588 0.123790406840550 0.127884973912401 0.128605458124042 0.125099265430839 0.127229409697989 0.132914452706804 0.13708037805536 0.133439546708495 0.123210288038486 0.126436063627890 0.123286502916806 0.122522810947791 0.120736178659259 0.121167373334536 0.127218182531905 0.128688546647897 0.120780675154497 0.123672743869582 3 3|0 -|/ 750092 750814 750428.25 749397 754166 - gene protein_coding_gene FALSE TRUE AT3G03250.1 UGP (UDP-glucose pyrophosphorylase); UTP:glucose-1-phosphate uridylyltransferase Is thought to encode a cytosolic UDP-glucose pyrophosphorylase with strong similarity to potato UTP--glucose-1-phosphate uridylyltransferase. Downregulated by flooding. Identical to Probable UTP--glucose-1-phosphate uridylyltransferase 2 (EC 2.7.7.9) (UDP-glucose pyrophosphorylase 2) (UDPGP 2) (UGPase 2) [Arabidopsis Thaliana] (GB:Q9M9P3;GB:Q9ASY1); similar to UTP--glucose-1-phosphate uridylyltransferase, putative / UDP-glucose pyrophosphorylase, putative / UGPase, putative [Arabidopsis thaliana] (TAIR:AT5G17310.2); similar to UDP-glucose pyrophosphorylase [Populus tremula x Populus tremuloides] (GB:ABB88893.1); similar to UDP-glucose pyrophosphorylase [Cucumis melo] (GB:ABD98820.1); similar to UDP-glucose pyrophosphorylase [Bambusa oldhamii] (GB:AAO48422.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618) -0.432471171107447 -5.6688921433133 0.000394540114865463 1 7.16771363163558 18.8110547307523 -0.432471171107447 0.051061272850429
AT3G46060_at 9.06223576366914 9.39339867056842 9.41023297201136 9.70755400202046 9.74166644567265 9.79412964213912 8.96974901289684 9.2615800812579 8.96914422677236 8.67695363222927 9.56783595312162 9.37889934662173 9.52356157129874 9.34507726547916 9.24456582214975 9.4666620234236 9.45949137514862 9.32849809153683 8.90823588047954 0.119208949614316 0.114341802936383 0.117234913465813 0.116598197961853 0.123698209382095 0.115895181555143 0.122499991739477 0.112107054092834 0.127438469717941 0.130511774331391 0.111886744292530 0.110616496524052 0.112796440884334 0.114543240817435 0.115986479317156 0.111902063354854 0.118046802584515 0.115439926651792 0.128641175514397 3 3|0 +|/ 16929167 16930684 16930008.875 16928574 16931003 + gene protein_coding_gene FALSE TRUE AT3G46060.1|AT3G46060.2 ARA3; GTP binding|ARA3 small GTP-binding protein (ara-3) Identical to Ras-related protein ARA-3 (ARA-3) [Arabidopsis Thaliana] (GB:P28186); similar to Ras-related GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT5G59840.1); similar to Sigma-54 factor, interaction re (GB:ABE82101.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.527267117316637 5.66689806948253 0.000395487898050281 1 7.16572644854308 18.5504525792418 0.527267117316637 0.0925456516037498
AT3G16000_at 10.4529634482295 10.5599895610097 9.70405878084095 9.86329030147776 9.93165496401335 10.0336326672744 10.6260609130964 10.5722259405992 11.1710881370599 10.9004771681092 10.8703578805639 11.2347512161654 10.4278528275951 10.7384200490688 11.1072486984985 10.7045257896398 10.4767949668821 10.8292889745970 10.7890078523360 0.0661704208668949 0.064707343984872 0.0712883462882796 0.0686211471340008 0.0658042853698726 0.0666930801979292 0.0670686682031658 0.0652751737100948 0.0720253096007679 0.0644747147645201 0.0651296035661771 0.0650675572311951 0.067062888435069 0.0711975785759036 0.065922204408979 0.0649558591969449 0.0660963806310822 0.0650377190738443 0.0642984490285702 3 3 - 5431089 5431607 5431294.091 5430895 5433823 - gene protein_coding_gene FALSE TRUE AT3G16000.1 MFP1 (MAR BINDING FILAMENT-LIKE PROTEIN 1) encodes a DNA-binding protein that binds to plastid DNA non-specifically and is associated with nucleoids and thylakoid membranes. The expression of the gene is correlated with the development of thylakoid membranes. Identical to MAR-binding filament-like protein 1 (MFP1) [Arabidopsis Thaliana] (GB:Q9LW85;GB:Q7Y1Z5); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03080.1); similar to MAR-binding filament-like protein 1-1 (GB:Q9M7J4); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain t-snare; (InterPro:IPR010989) -0.412260061395396 -5.66662077602115 0.000395619892508695 1 7.16545005963918 21.0940742901733 -0.412260061395396 0.0387375519449520
AT3G23210_at 3.98777588740701 4.3843938554006 4.37455149600721 4.11063713456024 4.52369847273667 4.30449980968084 6.41079683192867 6.00815176568056 5.28081798275486 5.81823453304592 5.66704383621965 5.74668854588593 5.31822969176151 4.97109261271972 5.53396708051146 5.52568486037294 5.04560351271805 5.65851787807958 6.12698753417551 0.271381552628182 0.248941735256366 0.25181566568502 0.256606740087129 0.254598004706417 0.261814316011191 0.251375679739074 0.255606062125056 0.268283826896032 0.24769569590201 0.252730209138511 0.248877315980412 0.248865887776032 0.265200176558074 0.2514555217156 0.24752176998674 0.254103515792236 0.252841301062728 0.247996014822764 3 3 - 8283266 8284325 8283609.091 8283097 8285088 - gene protein_coding_gene FALSE TRUE AT3G23210.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G14410.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE96711.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.589046352283229 -5.6647800324905 0.000396497325975403 1 7.16361498857242 10.3507465828131 -0.589046352283229 0.114416188151687
AT2G38870_at 8.68001849842741 8.89407348710982 8.62144347351725 8.65580798423301 9.52577023928829 9.30550606392217 6.47011607218552 6.84832017669296 7.60396627145587 9.871299888255 9.07935728685308 8.82281811408255 6.64017238739529 8.78810458257109 8.38698235319573 7.99612574542776 7.32334273265037 7.600493873769 7.63977574642188 0.198407550691425 0.195436537924451 0.199457521138732 0.195083461732815 0.202151816216771 0.199174183668133 0.207256297400033 0.203098126283777 0.204957181035517 0.196049947290135 0.195083461732815 0.195083461732815 0.220716902670684 0.195083461732815 0.195083461732815 0.195083461732815 0.199164491194575 0.202040693179045 0.195083461732815 2 0|2 /|- 16243641 16243786 16243716.556 16243459 16244358 - gene protein_coding_gene FALSE TRUE AT2G38870.1 protease inhibitor, putative similar to serine protease inhibitor, potato inhibitor I-type family protein [Arabidopsis thaliana] (TAIR:AT2G38900.1); similar to type I proteinase inhibitor-like protein [Citrus x paradisi] (GB:AAN76363.1); contains InterPro domain Proteinase inhibitor I13, potato inhibitor I; (InterPro:IPR000864) 0.505996940375889 5.6640936061327 0.000396825071218053 1 7.16293052968491 16.6008096343574 0.505996940375889 0.0845235383576409
AT3G51430_at 9.44749962048632 9.57401211203164 10.2812455047758 10.3274059580466 9.4602344227366 9.45282285469984 7.6668523421189 8.00989720806752 8.57399453823036 7.79801090277222 7.31243093773066 6.58950788324102 7.67927978958502 7.93189240079353 5.68666746055269 8.3798182144962 8.31230341656415 8.10886012079734 7.00351136622766 0.18520295741662 0.183426184731852 0.184538006846216 0.185051258072026 0.184584787268750 0.185838695246050 0.180626666619733 0.184417518100887 0.183699471129403 0.187025242893970 0.186657788637811 0.189838333925848 0.187812018807390 0.180394215790427 0.196189122498637 0.182750678876370 0.18192045659813 0.184002457344938 0.185761902602073 3 3|0 +|/ 19098138 19098848 19098591.5 19097444 19099089 + gene protein_coding_gene FALSE TRUE AT3G51430.1 YLS2 (yellow-leaf-specific gene 2); strictosidine synthase strictosidine synthase-like protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51450.1); similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G51440.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.457058978307641 5.66211608959614 0.00039777092384326 1 7.16095823219376 16.9234632347272 0.457058978307641 0.0637891109113991
AT1G08460_at 8.786318812388 8.99570171515855 9.39742358662093 9.3795071247251 9.13642878041424 9.47683789687278 8.11786451460756 8.4421750070156 8.41136526368862 8.40896011989023 8.71502944286752 8.23114605559813 8.68695265806003 8.74579007327945 8.50086892129784 8.75209517322106 8.78075634705249 8.73791877418028 8.2910838509739 0.130403291860755 0.141633199285603 0.136478193894589 0.140506468090917 0.138170842301551 0.147176646756161 0.131810911258655 0.147479161807724 0.150145036749813 0.143137682007676 0.135157536986306 0.134484299316284 0.136139649625144 0.137229266657236 0.136601103242910 0.130403291860755 0.141543922201838 0.132181174419178 0.144482001156336 1 1|0 +|/ 2673268 2674432 2673859.4 2672454 2674625 + gene protein_coding_gene FALSE TRUE AT1G08460.1 HDA08 (histone deacetylase 8); histone deacetylase similar to HDA15 (histone deacetylase 15), histone deacetylase [Arabidopsis thaliana] (TAIR:AT3G18520.2); similar to Histone deacetylase superfamily [Medicago truncatula] (GB:ABD32780.1); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286) 0.517692135354757 5.66169078830812 0.000397974668499051 1 7.16053396624438 17.4736768924981 0.517692135354757 0.0891219525072925
AT4G28210_at 5.39815691439755 5.88067475931256 5.43404417784605 5.23784546320653 5.12204333009952 5.10987974516907 6.15361216794729 6.20581942184598 4.80366102371121 5.56177072652109 4.88278613428865 5.49084852863842 4.65440829051936 4.4905316020851 5.06462471941187 4.66676922853083 5.22007065942936 4.40968782370828 5.29304887031558 0.229306667725584 0.227387761809156 0.233931072234828 0.226078657727667 0.227328685365755 0.241677110924393 0.228118687649980 0.223143489943004 0.249874310313144 0.229258857626915 0.221629475087377 0.221316652629118 0.238023678830421 0.225237939441044 0.245352150319343 0.22479026992234 0.23235248104179 0.246427592747902 0.230922027356063 4 4 + 13991341 13991875 13991577.182 13990623 13992084 + gene protein_coding_gene FALSE TRUE AT4G28210.1 EMB1923 (EMBRYO DEFECTIVE 1923) -0.521570151825849 -5.66094212439733 0.00039833360017266 1 7.15978704992422 10.6074892042326 -0.521570151825849 0.0906170398677157
AT2G45600_at 7.56912211306448 7.88854653370777 6.82051619034816 7.10406863096201 7.55870005442751 7.62336120419922 8.62800910482129 8.62295075547638 7.27098552503404 6.67218617615212 6.50511765225185 6.83014032048334 7.24164788792341 6.63347259653368 6.44383071717826 7.07337072659975 7.3571460915198 6.81736562437505 6.83304379767414 0.213209406421178 0.204696987411944 0.213816897148687 0.208869804641966 0.204071837761786 0.208337437937260 0.207733871375423 0.201535307745051 0.210418186662621 0.200278257436185 0.200278257436185 0.203858857587874 0.207487997959988 0.209076440129568 0.204207243051447 0.203714526712057 0.215708417084787 0.214427571510085 0.205896734380186 2 2 + 18797266 18797788 18797512.545 18796662 18798026 + gene protein_coding_gene FALSE TRUE AT2G45600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45610.1); similar to CXE carboxylesterase [Malus pumila] (GB:ABB89004.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.48156966048094 -5.65958512112492 0.000398985089583021 1 7.15843297064662 14.6209926325733 -0.48156966048094 0.074762939238534
AT1G36980_at 10.7144781275886 10.7666144660976 11.0116426867606 10.9691109630896 11.2044324499459 11.2024218233852 10.4230009856576 10.4395239793785 10.6863077806341 10.4429173081235 10.9298193093222 10.8095719763983 10.7892447328502 10.7541289396224 10.7063247269008 10.8454739002168 10.7831924550121 10.8687945180033 10.5234297551810 0.090310455321821 0.0882430574292336 0.093297378145039 0.0890637227879674 0.092808063784079 0.0910177425701924 0.0945732839347037 0.0904981297338157 0.0968975711016603 0.0947088308719082 0.0899565339343963 0.0896644595403847 0.0891682244824595 0.0938982110135669 0.0912033524686065 0.0916082158566731 0.0959916501957792 0.0911416640538221 0.0958633273090876 1 1 + 14027537 14029144 14028329.636 14027469 14029382 + gene protein_coding_gene FALSE TRUE AT1G36980.1 similar to salt tolerant protein [Triticum aestivum] (GB:AAY26392.1); similar to Os02g0566900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047175.1); similar to Os09g0453000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063340.1); contains InterPro domain Protein of unknown function UPF0220; (InterPro:IPR007919) 0.385465731462988 5.65469533168636 0.00040134232148288 1 7.15355111236379 21.5222550691231 0.385465731462988 0.0119948196718309
AT1G22570_at 8.59877529830198 8.83146870182847 7.85752141914178 8.0886905000404 8.8418205619829 8.73306353325699 6.77489173183049 7.01267784644768 5.82190117823494 5.58624391592981 5.19195457918105 4.71184024400595 6.2605267053395 6.87210523727778 4.01101184470554 6.35098657121905 7.30936563955072 4.51727681310265 4.4231184776051 0.257550599177046 0.24687440505232 0.251534319382194 0.247588335343773 0.251517740563223 0.250891733974188 0.251067168518797 0.247457166899202 0.264672788928085 0.258575707439759 0.249105036720555 0.250411875284339 0.253161901207572 0.261335851266625 0.249400452529646 0.25099966002902 0.249639925560011 0.260906096001622 0.256406634744188 1 1 - 7976684 7977177 7976896.636 7976609 7978562 - gene protein_coding_gene FALSE TRUE AT1G22570.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72120.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G22550.1); similar to putative oligopeptide transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD82719.1); similar to OSJNBb0008G24.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB86548.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.475933103022261 5.65315193431812 0.000402089506200140 1 7.15200937131218 13.5574743548810 0.475933103022261 0.0725913658045519
AT1G28570_at 5.65704345329228 6.19784073998787 5.71686496314236 5.60246765792933 5.84577846429229 5.53018038806189 6.21436298743033 6.29886448718973 4.79305377108997 5.70608645384987 4.15410204041568 4.39551528922944 4.5446540003205 4.63772599539929 3.9194254243219 4.30827283415724 4.40349518320546 4.16128801980131 4.66149853845745 0.234822005813557 0.225621742633994 0.239372529317219 0.224707132299639 0.220051725152336 0.236090047100373 0.222194933641054 0.226429206014733 0.231008423697242 0.223892018945120 0.225570014297783 0.220816160274231 0.219771285428935 0.221569927000666 0.232176667606554 0.219712548216590 0.225326338802731 0.227987480296281 0.224806801940805 1 1 - 10041854 10042532 10042140 10041627 10044136 - gene protein_coding_gene FALSE TRUE AT1G28570.1|AT1G28570.2 GDSL-motif lipase, putative similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28580.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087)|similar to carboxylic ester hydrolase/ lipase [Arabidopsis thaliana] (TAIR:AT1G31550.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.578095727363997 -5.65283410964736 0.000402243559094256 1 7.15169183724114 10.5674784440768 -0.578095727363997 0.111118222820983
AT3G49670_at 7.72639208041857 8.29885522138304 6.14069297166788 6.89507183487548 7.99853485323037 7.64038887453922 8.81534871209651 8.87789987492503 8.4270188757215 8.48438127914721 8.2861093756565 8.80469181639653 8.44866655737713 8.25929319780241 8.06664314237614 8.32634532471953 7.39799434751028 7.44734442657547 8.40078802857363 0.163834992317322 0.16277761041425 0.174789524633902 0.168175309781520 0.160775813357527 0.182298042866628 0.162013070429218 0.172172747154226 0.189525137596721 0.16929987530553 0.163988828123636 0.160489636745114 0.170952791601312 0.165401547849606 0.167461435652208 0.160489636745114 0.174206429830935 0.175020185808812 0.160489636745114 3 3 + 18431149 18431778 18431492.273 18428553 18432091 + gene protein_coding_gene FALSE TRUE AT3G49670.1 BAM2 (big apical meristem 2); ATP binding / protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM2,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs. similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to CLV1 (CLAVATA 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G75820.1); similar to BAM3 (big apical meristem 3), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G20270.1); similar to receptor-like protein kinase 2 [Glycine max] (GB:AAF91323.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to receptor-like protein kinase 3 [Glycine max] (GB:AAF91324.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.784355938111625 -5.65268569220986 0.000402315520640241 1 7.15154354960226 16.0826640952416 -0.784355938111625 0.175544548083698
AT1G29395_at 10.4844298549061 10.5193874295926 9.4434475893258 9.56254305884375 10.6200434788092 9.99346944726527 9.3962921526051 9.19746775105825 9.21936433084817 9.15119468015415 10.9208551411694 10.2760751601623 10.2766999139943 10.5029255671441 10.4617590359733 10.4656295764442 9.55603385380778 10.5776389560765 9.23601669222556 0.131330739392891 0.126792966816354 0.134197982055048 0.138107197859589 0.127805999690014 0.146543630569079 0.131740788869864 0.143751834305557 0.153766051215481 0.137076510626794 0.129326905054876 0.126244651646236 0.130108764489731 0.139233908478293 0.128651565390211 0.126244651646236 0.137888054670652 0.129862938373774 0.136267518759480 1 0|1 /|- 10288425 10289255 10288816 10288184 10289607 - gene protein_coding_gene FALSE TRUE AT1G29395.1 COR414-TM1 (cold regulated 414 thylakoid membrane 1) encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane. similar to COR314-TM2 (cold regulated 314 thylakoid membrane 2) [Arabidopsis thaliana] (TAIR:AT1G29390.1); similar to cold acclimation protein COR413-TM1 [Triticum aestivum] (GB:AAO24627.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.591495923020513 5.64970268959004 0.000403764842608608 1 7.14856235851012 19.6930821211370 0.591495923020513 0.115769809199116
AT3G50880_at 6.16691935571635 6.91331810389771 7.2305052505364 7.23555911591136 7.4156799436265 7.1298667818017 6.21475048738083 6.50664442383403 4.94711901789726 4.9796852755541 5.3977319237119 5.22492943005401 5.56124348996691 5.80258117060166 5.74922415196292 6.08576833933804 5.26172183499683 5.57848548373475 5.0918406963356 0.218482575056041 0.225427480989416 0.229740319380944 0.219978410921983 0.218044898044954 0.227347713086842 0.220370137544757 0.217408690702605 0.225621822740094 0.224312265862454 0.219234614366624 0.218189730330892 0.224872836790240 0.219961829748515 0.227603234192755 0.221759432033043 0.229138165548529 0.220092646912179 0.223279150120877 3 3 + 18924742 18925244 18924959 18924467 18925941 + gene protein_coding_gene FALSE TRUE AT3G50880.1 HhH-GPD base excision DNA repair family protein similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G19480.2); similar to Os05g0579100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056417.1); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.689495205855991 5.64771402162258 0.000404734225221552 1 7.14657405420503 12.1461182951589 0.689495205855991 0.147251914109324
AT2G47980_at 7.96814201396623 7.99095849965436 7.23820119740232 7.42250774933974 8.04290826906515 7.64231575689918 7.35896388191378 7.59063827232916 7.97191720995947 7.59797592863151 7.28279297611465 7.11568235369901 7.03588950110222 6.97218699633326 6.72747959613417 7.01607829072011 7.00923190940969 6.86380379333724 8.07027755616605 0.173415558313865 0.179453404444815 0.176795549612131 0.178660595024574 0.178117712557718 0.180558181801661 0.183924309980954 0.180257657372709 0.189961042665688 0.179189510716902 0.172343047645703 0.180593962773688 0.177628125038827 0.186230190748674 0.183680232205575 0.172343047645703 0.195608197395073 0.178992750228435 0.178320839671136 2 2 + 19643071 19643831 19643484.4 19638329 19644048 + gene protein_coding_gene FALSE TRUE AT2G47980.1 SCC3 (sister-chromatide cohesion protein 3); binding similar to Os05g0188500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054841.1); similar to SCC3 [Oryza sativa (japonica cultivar-group)] (GB:AAQ81937.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain STAG; (InterPro:IPR013721) -0.508928072467666 -5.64626653461035 0.000405441406081090 1 7.14512640719089 15.0983044927506 -0.508928072467666 0.0862911153883388
AT1G19770_at 9.9994951170522 10.2220084015952 10.2249273596520 10.2539910037021 10.6978621850080 10.6390838712501 9.80967455512175 10.1238527394057 10.5257108362926 10.0231483535860 10.8600326378035 10.5884197216472 10.8108341333095 10.7849996044226 10.3512072225492 10.8428924181688 10.5091318629859 10.8269986906295 10.0035556054049 0.0756043467644568 0.0768624841971251 0.080599921985509 0.0789364590731502 0.0774657579887833 0.077170685600773 0.0829783466039447 0.0767494856072548 0.0764079565541243 0.0777268100561843 0.0769676368844325 0.075681666004959 0.0756043467644568 0.0765868520461957 0.0782824014210991 0.0756043467644568 0.0781832835321744 0.0773610058136708 0.0780682795450173 1 1 + 6833125 6833627 6833379 6832341 6833828 + gene protein_coding_gene FALSE TRUE AT1G19770.1 ATPUP14 (Arabidopsis thaliana purine permease 14); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP15 (Arabidopsis thaliana purine permease 15), purine transporter [Arabidopsis thaliana] (TAIR:AT1G75470.1); similar to Os02g0689200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047783.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD07671.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.463942336477179 5.64544783005879 0.000405841987992727 1 7.14430745369297 20.6868383048654 0.463942336477179 0.0675843667742777
AT3G19515_at 6.20405722273525 6.19442524436882 6.52453182675122 6.16957762721354 6.74644783115065 6.50707562452216 6.16564259281862 5.63816086944167 4.47420992150909 4.92036417671297 5.26841998636847 5.82024961420835 5.76983255620365 5.57082542599759 5.25343769049421 5.67789383554071 5.85230003112342 5.24011473062032 5.005780845857 0.188708940979648 0.190825506846645 0.189874297442644 0.192475830493869 0.192661997113387 0.192285683776784 0.188387343645872 0.198756869586874 0.206170663135685 0.186043981647174 0.186956018951087 0.186537633476600 0.184759134151463 0.187225317028469 0.193456664513353 0.185174160323999 0.192624896757844 0.189527008437349 0.186174514443242 3 3|0 -|/ 6766883 6770857 6768665.778 6766674 6771175 - gene protein_coding_gene FALSE TRUE AT3G19515.2 binding similar to apoptosis inhibitory protein 5 (API5)-related [Arabidopsis thaliana] (TAIR:AT1G23935.1); similar to putative fibroblast growth factor 2-interacting factor [Oryza sativa (japonica cultivar-group)] (GB:BAD15974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383) 0.596426332097434 5.64528428679835 0.000405922059463151 1 7.14414384698324 11.4471161291315 0.596426332097434 0.117578040646873
AT2G01170_at 7.03625191332947 7.17611772297653 6.77401678539703 7.08456956221998 7.8395653205537 6.85893023457832 6.13818086783935 6.25865222037849 6.47878789626798 5.79506697484135 7.01333477108888 7.2932797918842 7.26078624224408 7.35676676938507 6.96808773233852 7.17528206770803 6.78771660246079 7.23449128056452 5.79195130745034 0.184406185240342 0.190617840152709 0.210709324383078 0.197062100102895 0.190038342890832 0.198208184833068 0.198061638169126 0.188138394789813 0.19795768999421 0.192793480118582 0.186789585281429 0.184207351124603 0.184089753177851 0.191629816580421 0.182468330419868 0.189954848008090 0.191856285305772 0.18787856904727 0.189647358819299 2 2 - 102363 103060 102721.818 102193 104548 - gene protein_coding_gene FALSE TRUE AT2G01170.1|AT2G01170.2 amino acid permease family protein similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to putative GABA-specific permease [Oryza sativa (japonica cultivar-group)] (GB:BAD88024.1); similar to putative GABA-specific permease [Oryza sativa (japonica cultivar-group)] (GB:BAD88019.1); similar to P0660F12.26 [Oryza sativa (japonica cultivar-group)] (GB:BAB63860.1); contains InterPro domain Amino acid permease subfamily; (InterPro:IPR004756); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293)|similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to Os01g0607200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043529.1); similar to putative GABA-specific permease [Oryza sativa (japonica cultivar-group)] (GB:BAD88019.1); similar to Os01g0945300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045377.1); contains InterPro domain Amino acid permease subfamily; (InterPro:IPR004756); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.800626279456169 5.63948399265728 0.000408773097486519 1 7.13833834729235 13.4748623534403 0.800626279456169 0.180853631909076
AT3G59040_at 7.7689925495191 7.7823517721627 7.05223670883547 7.21926495080721 8.01085098279851 7.6293410001537 8.17809990449355 8.19237651621746 7.7795560073379 7.64898082108877 6.94283309930489 7.64260949289499 7.05433779937836 7.19883767309181 7.88773103073708 7.31584676391057 7.24045836503519 7.02391099473084 7.7712820287275 0.155169199647957 0.160656055177732 0.154043730853183 0.161793406495178 0.1560253585867 0.167940223059838 0.168984884879537 0.157748430363994 0.168779654260856 0.154934655774896 0.158410697481204 0.158165621941125 0.155391700709968 0.159756004766486 0.156039733021474 0.154512454979406 0.178170230692409 0.156377495089520 0.152202867129506 3 3 - 21832501 21833046 21832843 21832326 21835325 - gene protein_coding_gene FALSE TRUE AT3G59040.1|AT3G59040.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os08g0191900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061174.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE78562.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os08g0191900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061174.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE78562.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.473742037474367 -5.63919637073983 0.000408915041336638 1 7.1380503176184 15.2399861005086 -0.473742037474367 0.0721516739359615
AT4G22930_at 7.06797423409801 7.3372185134518 6.38805248283812 6.15146898362461 5.91186054165853 6.40872929802605 7.91775584103506 7.7208426162874 6.66563633668145 6.64197888956777 6.26336548028162 7.19054253442687 6.30911662530388 6.5824315392251 7.41395687868075 6.33706474008374 6.72286443455696 6.23596150516743 6.1645093479811 0.239442986319297 0.239076615321782 0.243567833792490 0.243771726153812 0.240417156621098 0.248650186590441 0.240523001574288 0.247916371883047 0.252579923685547 0.242585927335064 0.242190644966033 0.243031863255307 0.242666775629092 0.241489108117287 0.248988288780986 0.244976803102463 0.244118422451761 0.244263941970232 0.239451324740184 4 4 + 12020387 12021180 12020811.455 12018895 12021602 + gene protein_coding_gene FALSE TRUE AT4G22930.1 PYR4 (DIHYDROOROTASE, PYRIMIDIN 4, dihydroorotase); dihydroorotase Encodes dihydroorotase (PYR4). Identical to Dihydroorotase, mitochondrial precursor (EC 3.5.2.3) (DHOase) (PYR4) [Arabidopsis Thaliana] (GB:O04904); similar to dihydroorotase [Beta vulgaris] (GB:CAC80990.1); similar to Os01g0747500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044233.1); similar to putative dihydroorotase [Oryza sativa (japonica cultivar-group)] (GB:BAB56025.1); contains InterPro domain Dihydroorotase homodimeric type; (InterPro:IPR004721); contains InterPro domain Dihydroorotase; (InterPro:IPR002195); contains InterPro domain Amidohydrolase 1; (InterPro:IPR006680) -0.577357599437778 -5.63859842372214 0.000409210305588346 1 7.13745147764208 13.4242983931904 -0.577357599437778 0.111364086537357
AT2G27510_at 4.47686183671817 5.32655877538881 6.04416961951006 6.07009811389271 5.92232644985307 6.31464725637206 6.20505321927845 6.78187149985987 4.61518119802890 5.17105639332791 6.24337408356367 6.33827558074336 6.44196898911755 6.63549358427061 5.68244146640717 6.32850794500342 6.05390637603491 6.93803858191535 5.38695642268992 0.26003465919571 0.251239970418008 0.263697336460676 0.255881602640349 0.257394081402899 0.272148321304647 0.244737963584974 0.250783480018736 0.266035735024413 0.246254730134207 0.253339498907527 0.256015209770303 0.244198117259310 0.248531388979094 0.253637659277541 0.246083373838002 0.262595425472550 0.246287672562488 0.252892749691452 2 2 - 11765382 11765779 11765544.727 11765157 11766554 - gene protein_coding_gene FALSE TRUE AT2G27510.1 ATFD3 (FERREDOXIN 3); electron carrier similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to non-photosynthetic ferredoxin [Citrus sinensis] (GB:CAA87068.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041); contains InterPro domain 2Fe-2S ferredoxin subdomain; (InterPro:IPR006057) 0.832621757481037 5.63594161652373 0.000410525047226108 1 7.13478996363474 11.5879394283079 0.832621757481037 0.1903044392255
AT1G67530_at 6.43387285019345 6.41107733288116 7.01277156768743 7.0025288664262 7.3313755795686 7.35976029292598 6.51425933257141 6.8841715440314 6.54768005857073 6.56897104429718 6.79300745254768 6.48460769740252 6.66951246978157 6.78013162524528 6.41213019394689 7.26563769615186 7.47533457022353 7.19827995829986 6.65161520690424 0.214245407840312 0.213038545235853 0.215515863461624 0.215421429590491 0.219787661567221 0.215145772642346 0.212275221057669 0.215290126288625 0.218529705375788 0.213045166102911 0.231634498452282 0.223212865639939 0.220276996651793 0.220941178142296 0.219190806657458 0.215868397369494 0.212275221057669 0.229388553077863 0.220221028060677 1 1 + 25314159 25314716 25314444.636 25311321 25314971 + gene protein_coding_gene FALSE TRUE AT1G67530.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein similar to U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G27910.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G24330.1); similar to Os01g0901000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045108.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.455585958212610 5.6291369928538 0.000413913457218686 1 7.12796777920944 13.6058533263893 0.455585958212610 0.0643487157870117
AT2G36990_at 9.22993319851916 9.38449980556688 8.68960718381588 8.72944960719533 9.2077920768923 9.09193535808393 9.74345396414257 9.521720395959 9.58839084817613 9.6495204548306 9.29888866254012 9.6046346854676 9.11642043070682 9.03784571069731 9.62442746387056 9.34338966654857 9.26197773376944 8.92779802627634 9.55084898259801 0.114707221791636 0.106333814788769 0.119671445695956 0.115429646516006 0.109680312037764 0.111554118795539 0.109405226665427 0.107442187111017 0.109275982791040 0.108166257921842 0.110476817493187 0.106333814788769 0.110036567110032 0.113485281845653 0.110830505453168 0.107523322626605 0.120766680972244 0.108273630780891 0.111362898757931 2 2|0 -|/ 15544582 15545313 15544953.6 15544337 15547218 - gene protein_coding_gene FALSE TRUE AT2G36990.1 SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA binding / DNA-directed RNA polymerase/ transcription factor Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to Os08g0242800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061343.1); similar to sigma factor SIG6; ZmSIG6 [Zea mays] (GB:AAD17856.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.429768207800179 -5.62652178183302 0.000415223835755534 1 7.12534371145787 18.6363870617816 -0.429768207800179 0.0513557929063585
AT3G05590_at 10.6226121446575 10.8466536465805 10.2942392497711 10.3335977115016 10.2365855639673 10.0419037126283 10.9069692834275 11.1392316182133 10.6363192504139 10.7039692972502 10.3357569425163 10.7896411416262 10.4185778955497 10.2570577885376 10.9714160182495 10.0966688627353 10.0077138180795 10.1742606078751 10.5948805996357 0.0810897100469025 0.0795167504760525 0.082029620166255 0.081707172613366 0.0826043740954816 0.0830139834379627 0.0798333606252894 0.078104479305393 0.0882542952848772 0.0862603525893797 0.081071294683383 0.078104479305393 0.0792615422897653 0.0888036224544535 0.0817452128888582 0.0788320829215382 0.0858283365218347 0.0825699235464956 0.0862651342168212 3 3|0 +|/ 1621797 1622694 1622254.1 1621463 1623020 + gene protein_coding_gene FALSE TRUE AT3G05590.1 RPL18 (RIBOSOMAL PROTEIN L18); structural constituent of ribosome Encodes cytoplasmic ribosomal protein L18. Identical to 60S ribosomal protein L18-2 (RPL18B) [Arabidopsis Thaliana] (GB:P42791;GB:Q9M9W4); similar to 60S ribosomal protein L18 (RPL18C) [Arabidopsis thaliana] (TAIR:AT5G27850.1); similar to cytoplasmic ribosomal protein L18 (GB:AAA69928.1); contains InterPro domain Ribosomal protein L18e; (InterPro:IPR000039) -0.457977430894873 -5.62616227910647 0.000415404322270091 1 7.12498289970425 21.0659456247581 -0.457977430894873 0.0655761868595827
AT3G02580_at 5.79758560597718 6.40923508882808 6.31528430618145 6.7104650624766 7.15415584540417 6.74118965754095 6.12155926429794 6.47157853100909 6.85489394709974 6.30638919134266 7.79883649677424 7.55739753770216 7.6144306932723 7.59010427408723 7.74971021761149 7.29892292485371 6.8280466335523 7.30801008758953 6.52325773362038 0.225344200818402 0.218564647520080 0.239097067750418 0.235202596540295 0.225216937481972 0.234714121174610 0.234518336364553 0.227027810144072 0.232642344372910 0.224366501258844 0.226121588348648 0.222373474542652 0.218564647520080 0.228757640844886 0.225257865004752 0.218564647520080 0.227274576245303 0.225337656718002 0.226878399560471 3 3|0 +|/ 547721 548559 548185.6 546910 548800 + gene protein_coding_gene FALSE TRUE AT3G02580.1 STE1 (STEROL 1); C-5 sterol desaturase Brassinosteroid biosynthetic enzyme, catalyzes delta7 sterol C-5 desaturation step. Mutant has dwarf phenotype. Identical to Delta(7)-sterol-C5(6)-desaturase 1 (EC 1.3.3.-) (Delta-7-C-5 sterol desaturase 1) (Delta(7)-sterol-C5-desaturase 1) (Protein STEROL1) (Dwarf 7 protein) (STE1) [Arabidopsis Thaliana] (GB:Q39208;GB:Q8L9C0;GB:Q9SWU4;GB:Q9SYS2); similar to delta 7-sterol-C5-desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02590.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96921.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.718476414766083 5.62394389531249 0.00041651994801582 1 7.12275594875638 13.4799796613151 0.718476414766083 0.157026246919955
AT4G28240_at 10.8660797815143 11.0111839975567 11.3819806659946 11.4376543947296 12.0362283792523 11.9799240718381 10.8582029914314 11.0492495047754 11.2500379465965 10.9045284133891 11.4833204327277 10.9503188237746 11.7019392681038 11.1809174081189 10.7898351537767 11.3816377524982 11.3744774221795 10.8911275186243 11.2941562160103 0.0846619506602666 0.0831014428817223 0.0870305486693752 0.0840083521964521 0.0830217187335805 0.0913226862214924 0.0819487851899646 0.0866182074542578 0.0860639038834754 0.0858861206528562 0.0808433503915412 0.0824527508015358 0.0808433503915412 0.0864400191566463 0.0834763445645385 0.0811060649593176 0.0922530576147502 0.0853976951567187 0.0819026432679671 4 4 - 13997985 13998201 13998092.909 13997298 13998353 - gene protein_coding_gene FALSE TRUE AT4G28240.1 wound-responsive protein-related 0.416195169805515 5.61783117364798 0.000419611004006587 1 7.11661525964819 22.5119484306236 0.416195169805515 0.0437194251230402
AT1G33110_at 7.43073718566135 7.28741101160243 8.57853939672763 8.42976610910842 8.43882855708248 8.30458565181365 8.96761047451327 8.93200518776042 8.46475991124477 8.45000750249943 6.87329492540144 7.11045494995346 7.82068961340714 7.287701521511 6.38658361322904 8.61617334709124 7.81117051254119 6.96824339810141 8.50385316497935 0.183604849919324 0.175275977792327 0.171479924845722 0.171422050560441 0.171467292952451 0.179043714850428 0.173363585732177 0.174526305205974 0.179052587189724 0.180381773944556 0.181670213012811 0.175318897704919 0.177620826862581 0.181344513449345 0.190112349447293 0.171422050560441 0.179254895416527 0.184951309438799 0.172689434309688 1 0|1 /|+ 12007809 12008383 12008021.25 12004907 12008798 + gene protein_coding_gene FALSE TRUE AT1G33110.1|AT1G33110.2 MATE efflux family protein|transporter similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33080.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33090.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33100.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE91543.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528)|similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33090.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33080.2); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G33100.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE91543.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.415047788644007 -5.61592429085237 0.000420580388434025 1 7.11469834232592 16.2122667024815 -0.415047788644007 0.0430780220996951
AT3G06420_at 4.36572235449157 4.91993863268818 5.59618732838162 5.48403142189117 6.71038829118975 5.90981332734232 5.17712342384271 4.40091244619849 4.73923615170348 4.664159657583 5.5353505060117 5.39641298770787 4.92633655073337 5.7804404069788 5.24661713669444 5.55728239309581 5.19250061742586 5.24489225110295 4.78325818447979 0.228172516818527 0.220945970347136 0.228565612355016 0.224995536813612 0.226825312388683 0.247024369358501 0.221137016380072 0.224298303868237 0.236705490368028 0.228977741753427 0.224073600547739 0.223861400100107 0.227129787306001 0.224770093143353 0.220945970347136 0.220945970347136 0.229049997920736 0.23110113751243 0.222169933594441 3 3|0 -|/ 1955231 1956254 1955515.889 1954996 1956403 - gene protein_coding_gene FALSE TRUE AT3G06420.1 ATG8H (AUTOPHAGY 8H); microtubule binding similar to APG8H (autophagy 8H), microtubule binding [Arabidopsis thaliana] (TAIR:AT3G15580.1); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE82404.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.920137659763037 5.61306682904605 0.000422037591359146 1 7.11182467711429 10.3649465386570 0.920137659763037 0.216363899596928
AT4G39820_at 6.6947287272329 7.19025579612464 7.68718647315645 7.44898235260885 6.71256927342808 6.58757915632027 6.12859921748494 6.12079555486728 5.81290717538623 5.41785046442179 6.32461944351989 6.46347430925865 5.66104529631274 5.84126652613538 6.23920528630016 6.43263860127263 6.01554532998612 6.07949203643413 5.67785725159295 0.231152151132014 0.229142576752017 0.241870015115924 0.233226611472055 0.237229060861690 0.242987465251521 0.231618869386647 0.236555545520431 0.229837633533699 0.244579543468838 0.229142576752017 0.229142576752017 0.238325403768380 0.236103833586117 0.229142576752017 0.231179856739200 0.239252381726577 0.23584382193103 0.234728369946261 4 4 - 18476698 18477244 18476927.545 18476001 18477937 - gene protein_coding_gene FALSE TRUE AT4G39820.1 binding similar to Os02g0550400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047094.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_419934.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.535720189901555 5.6117917194924 0.000422689629848001 1 7.11054188529554 12.7055199776293 0.535720189901555 0.0975837596166652
AT4G00335_at 6.00970647156695 6.49685747858178 6.19076202290938 6.39827173216666 7.17723036992685 6.8733382578808 5.64422726068165 5.67583410648658 4.50870990971148 4.10964201158048 4.6999238147087 4.04523907203315 5.4322541635322 4.78737245247799 4.91503225684147 5.13667519421097 5.33961068207202 4.446167970449 4.69066486094867 0.24130695778224 0.243938679956139 0.243919563540821 0.242878342426267 0.244302399363384 0.253262967476727 0.239176346057964 0.2500909641674 0.248323687176228 0.247414863547172 0.239176346057964 0.244235201519208 0.247228935139001 0.240670634766243 0.242037607496608 0.239176346057964 0.244736700793922 0.248216624172182 0.239427366850212 4 4 + 146870 147688 147292.818 145904 148339 + gene protein_coding_gene FALSE TRUE AT4G00335.1|AT4G00335.2|AT4G00335.3 RHB1A (RING-H2 finger B1A); protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41350.1); similar to Os10g0142100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064147.1); similar to Os11g0294600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067717.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65911.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.558594894884413 5.611704697802 0.000422734169239669 1 7.11045432915589 10.9515901516272 0.558594894884413 0.105793708986586
AT3G19010_at 11.1246238031603 11.1887867680644 11.3105560595862 11.2733928772521 11.1759874935115 10.8952438938989 10.1078242979648 9.9547742277296 10.1878695855258 9.76042724160909 10.2632516684914 10.2014700976502 9.7150005841487 10.4032237038259 9.55635337462657 10.0201143843762 9.94061295039665 10.1225061338120 9.21403853431012 0.108924422753805 0.100586549800884 0.104054985028420 0.105650858190836 0.101779890630707 0.103762359590963 0.108622191930560 0.104803928198791 0.112756204390260 0.108584900160406 0.103137480790349 0.102217608312999 0.105087436300067 0.10403124283621 0.101178646906027 0.100586549800884 0.123860618481723 0.109006686071419 0.112353831070805 3 3 - 6556421 6556943 6556719.091 6556203 6557944 - gene protein_coding_gene FALSE TRUE AT3G19010.1|AT3G19010.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19000.1); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19000.2); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.43841548259166 5.60650582428215 0.000425404375808575 1 7.10522116993866 20.7531962106365 0.43841548259166 0.0568028785044084
AT2G39670_at 8.35140276706648 8.40632801280847 7.47798629839863 7.54603752170993 8.4955346589868 7.86343433120242 8.71925089542625 8.23566979361741 7.66123563354567 8.13339387763456 6.34766381100874 7.35946532273851 7.53894406022673 6.79767326623064 7.79236559572204 7.79119673167999 7.33074156868579 7.24677126219519 8.22483772374757 0.176298101745478 0.181057921381483 0.181316751478279 0.177216322191944 0.183965508385824 0.178414691345919 0.179821291931968 0.185845621273666 0.184024123562703 0.178861654584683 0.187502452203858 0.175901754871774 0.182939691898514 0.192787626352194 0.176177109837476 0.186699673294320 0.183595696405023 0.180678870705458 0.175901754871774 2 2|0 +|/ 16543173 16543999 16543618.25 16541308 16544396 + gene protein_coding_gene FALSE TRUE AT2G39670.1|AT2G39670.2 radical SAM domain-containing protein similar to radical SAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19630.1); similar to radical SAM domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87375.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Conserved hypothetical protein 48; (InterPro:IPR004383); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.656650520326756 -5.60584234407139 0.000425746470722474 1 7.10455298058282 15.7780014252122 -0.656650520326756 0.138557171444077
AT1G21750_at 10.7277682271066 10.7260018021746 10.9382017670346 10.9640296014526 10.2468413494877 10.1095087737961 9.40423042422392 9.14831899573223 8.45338204230832 8.18584366502002 8.5404688592822 8.67146978014258 8.61682368304217 8.451967881537 8.79184618133335 8.28740790076202 8.46574011932802 8.43435195083377 8.09277831247613 0.164282177376613 0.164839121494651 0.168326209234234 0.164282177376613 0.166800116141096 0.169454034370327 0.167517261005653 0.164282177376613 0.167523518092830 0.175507970014967 0.170560307025657 0.166417603269815 0.174133691950048 0.169537931236940 0.164282177376613 0.169021178904735 0.176385373273016 0.171730710561478 0.176553779724691 1 0|1 /|+ 7647808 7648167 7648004.222 7645689 7648830 + gene protein_coding_gene FALSE TRUE AT1G21750.1|AT1G21750.2 ATPDIL1-1 (PDI-LIKE 1-1); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily; isoform contains non-consensus GA donor splice site at intron 9 Identical to Probable protein disulfide-isomerase 1 precursor (EC 5.3.4.1) (PDI 1) [Arabidopsis Thaliana] (GB:Q9XI01); similar to ATPDIL1-2 (PDI-LIKE 1-2), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G77510.1); similar to Protein disulfide-isomerase precursor (PDI) (GB:Q9XF61); similar to Protein disulfide-isomerase precursor (PDI) (GB:P29828); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792)|Identical to Probable protein disulfide-isomerase 1 precursor (EC 5.3.4.1) (PDI 1) [Arabidopsis Thaliana] (GB:Q9XI01); similar to ATPDIL1-2 (PDI-LIKE 1-2), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G77510.1); similar to Protein disulfide-isomerase precursor (PDI) (GB:Q9XF61); similar to Protein disulfide-isomerase precursor (PDI) (GB:P29828); similar to protein disulfide isomerase [Brassica carinata] (GB:ABB17025.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792) 0.425786857615609 5.59526633620581 0.000431240287208179 1 7.09389170654027 18.6713680598598 0.425786857615609 0.0504599306784657
AT1G14700_at 4.04782292767702 4.4142104029612 3.02458515993727 3.23940504116307 3.64393476208742 3.50433529700681 5.36990381974404 5.71759445818371 4.60631708975164 6.61212156941875 6.2208998074824 7.52040223825289 6.26226254751608 6.27318935807284 7.00625547615023 6.6041296417584 5.36344875810247 6.40212167769528 6.7593180143432 0.262837886426627 0.270070284297268 0.273778959011888 0.269558413642561 0.263379676471082 0.272738218079917 0.260666148968936 0.271969100782034 0.277278156472174 0.262573928183146 0.268168046191006 0.266445962394806 0.266688805359042 0.270070213370118 0.269957598693090 0.264256528234952 0.281564529543872 0.28265990322884 0.266884296312612 1 1|0 +|/ 5059924 5060958 5060519.3 5058675 5061131 + gene protein_coding_gene FALSE TRUE AT1G14700.1|AT1G14700.2 ATPAP3/PAP3 (purple acid phosphatase 3); acid phosphatase/ protein serine/threonine phosphatase|ATPAP3/PAP3 (purple acid phosphatase 3) similar to PAP8 (PURPLE ACID PHOSPHATASE PRECURSOR), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G01890.1); similar to purple acid phosphatase 1 [Solanum tuberosum] (GB:AAT37529.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.535157353400944 -5.59368652593559 0.000432067560390846 1 7.09229751060984 10.3448111065784 -0.535157353400944 0.0980113164760592
AT2G43710_at 10.2156557431356 10.4356937487363 10.1659732932325 10.2731213106303 10.3535832102502 10.2080052406087 11.3350965841286 11.4649390317551 10.7857894200379 11.0023016811083 10.7462622452300 10.5997385082123 10.7974737146571 10.6060402919353 10.4978977883459 10.7867626055270 10.7321036828004 10.6207149730408 10.9860821043020 0.0725122434631442 0.0683819383100104 0.0705094221232741 0.0718119449635337 0.0720968019353722 0.0730038871617009 0.0704997461394312 0.0704877804865419 0.082611603107215 0.0712620040286747 0.0683352974032866 0.0680040187363929 0.0704568799107525 0.0684721763813165 0.0692592343311077 0.0680040187363929 0.0707542842922513 0.0744893287765297 0.0692250017972896 2 2 + 18129020 18129453 18129250.545 18127033 18129966 + gene protein_coding_gene FALSE TRUE AT2G43710.1|AT2G43710.2 SSI2 (fatty acid biosynthesis 2); acyl-[acyl-carrier-protein] desaturase Encodes a stearoyl-ACP desaturase, involved in fatty acid desaturation. The ssi2 mutants have increased 18:0 and reduced 18:1 fatty acids. Exogenous application of glycerol to wild type plants mimics the ssi2 mutant phenotype. The altered 18:1 fatty acid content in the ssi2 mutants has an impact on SA- and JA-mediated defense signaling. similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02630.1); similar to Stearoyl-acyl carrier protein desaturase [Brassica napus] (GB:CAA52786.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:P29108); similar to plastidic delta-9-stearoyl-acyl-acyl carrier protein desaturase [Brassica juncea] (GB:AAD40245.1); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Fatty acid desaturase, type 2 subfamily; (InterPro:IPR005803)|similar to acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative [Arabidopsis thaliana] (TAIR:AT3G02630.1); similar to Stearoyl-acyl carrier protein desaturase [Brassica napus] (GB:CAA52786.1); similar to Acyl-[acyl-carrier-protein] desaturase, chloroplast precursor (Stearoyl-ACP desaturase) (GB:P29108); similar to plastidic delta-9-stearoyl-acyl-acyl carrier protein desaturase [Brassica juncea] (GB:AAD40245.1); contains InterPro domain Fatty acid desaturase, type 2; (InterPro:IPR005067); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Fatty acid desaturase, type 2 subfamily; (InterPro:IPR005803) -0.432012844427953 -5.58880295223653 0.000434635837667275 1 7.08736675552728 21.3555578343270 -0.432012844427953 0.0541606989157286
AT3G21690_at 9.30468154548519 9.52399248031463 10.1760606081801 10.1684208791134 10.7076046366535 10.0978497888896 9.72597473636257 9.66779935504665 8.32890593753465 8.781846720069 8.2894947580324 8.53970324743847 9.56262882933456 9.12120926781284 7.91681365905618 9.8489868947681 9.75044913444287 8.8265765191256 8.57706820882903 0.138240325330476 0.133944069354631 0.138000261350083 0.137079411635940 0.133785421766695 0.137726651481363 0.135568107757809 0.135384702856417 0.162301097371248 0.137201963222358 0.140557740681155 0.133275959032783 0.138715956820375 0.14362276086948 0.146978815273942 0.133275959032783 0.140397501915221 0.140094630179998 0.140951919448837 3 3|0 +|/ 7639804 7641632 7641114.4 7638670 7642212 + gene protein_coding_gene FALSE TRUE AT3G21690.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G11670.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G61890.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97209.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97220.1); similar to putative MATE efflux family protein [Oryza sativa (japonica cultivar-group)] (GB:AAS01962.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.575623891090362 5.58672844276555 0.000435731864898003 1 7.08527096319041 18.6938428758702 0.575623891090362 0.112597429003940
AT2G02810_at 8.26703275325676 8.42117931291624 8.43701413639326 8.6981578473743 7.28346548435805 7.44769285400958 3.95812225168065 4.4125409570166 5.38306359549493 4.32779550322435 3.49552122445377 4.13611478361922 3.91490734207068 4.08890580387966 4.41231088909167 3.99600416483469 4.12116264935565 3.96851868236384 4.22743486059928 0.240270931776104 0.236536243021626 0.240133753002678 0.235533318667505 0.238911485985072 0.238670505445888 0.242694517153887 0.242390214530609 0.255139992144668 0.244236126596158 0.246272395828671 0.236056855952370 0.234647237605505 0.234647237605505 0.240729658369132 0.234647237605505 0.247782206880183 0.236189523755455 0.24607851612263 2 2|0 +|/ 802531 803195 802878.4 801529 803435 + gene protein_coding_gene FALSE TRUE AT2G02810.1 ATUTR1/UTR1 (UDP-GALACTOSE TRANSPORTER 1); UDP-galactose transporter/ UDP-glucose transporter/ pyrimidine nucleotide sugar transporter Encodes a multitransmembrane hydrophobic protein that functions as transporter of UDP-galactose and UDP-glucose into the Golgi. Localized in the ER. Involved in the unfolded protein response, a mechanism that controls proper protein folding in the ER. similar to ATUTR3/UTR3 (UDP-GALACTOSE TRANSPORTER 3), pyrimidine nucleotide sugar transporter [Arabidopsis thaliana] (TAIR:AT1G14360.1); similar to hypothetical protein MtrDRAFT_AC149601g16v1 [Medicago truncatula] (GB:ABD32994.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.53622323391768 5.58458881917437 0.000436865455981002 1 7.08310861355344 11.4470400390748 0.53622323391768 0.0987206993176905
ATCG00710_at 11.9548080186170 12.2545057487376 12.3948470007458 12.4403975900568 12.3151472711349 12.1230656120953 12.2718804126316 12.6418002896172 12.1474634941073 12.0440221240457 13.2453794770574 13.3104960120032 13.1812625601176 13.0652656515258 12.880021315091 13.0807769845117 12.6946657748336 12.9446060339587 12.0075757460935 0.0888580375944823 0.0899678504476163 0.0901686488635632 0.092602104780685 0.0951788809582627 0.089255016338107 0.0963515948369531 0.094523716355141 0.104039189082660 0.0966015839108828 0.0928472944776131 0.0897235480948432 0.0904147246509747 0.0980653751705355 0.091455729293946 0.0897335632650036 0.102689242042753 0.0949138387287006 0.0919050275384121 C C + 74485 74670 74587.091 74485 74706 + gene protein_coding_gene FALSE TRUE ATCG00710.1 Encodes a 8 kD phosphoprotein that is a component of the photosystem II oxygen evolving core. Its exact molecular function has not been determined but it may play a role in mediating electron transfer between the secondary quinone acceptors, QA and QB, associated with the acceptor side of PSII. Identical to Photosystem II reaction center protein H (PSII-H) (Photosystem II 10 kDa phosphoprotein) (psbH) [Arabidopsis Thaliana] (GB:P56780); similar to photosystem II phosphoprotein [Coffea arabica] (GB:YP_817511.1); contains InterPro domain Photosystem II phosphoprotein PsbH; (InterPro:IPR001056) 0.510785594581294 5.58419705471293 0.000437073364727095 1 7.08271260268856 24.8578880000643 0.510785594581294 0.0891911153885881
AT1G51160_at 8.16161292845197 7.99938582136136 8.14868777474511 8.04665551394626 8.45527741029208 8.47344214980783 7.90085265247333 7.884907835496 8.0540193830705 7.60099006385923 8.51071687092333 8.28066694096812 8.3354697048404 8.1590901031942 8.42016607758733 8.22353178584439 8.21779802734644 8.42644199309918 7.7982072838052 0.108895518419127 0.108634730510715 0.108728510332994 0.111342779629264 0.107423394621924 0.108760690092280 0.108781079870982 0.107384225095422 0.119040827988298 0.116692876842994 0.107382176823824 0.107287207519017 0.105992398472783 0.108940607281474 0.113167398626362 0.107855367880294 0.126893891507081 0.113504216446495 0.113925421636639 1 1|0 +|/ 18953738 18955183 18954036.444 18953259 18955451 + gene protein_coding_gene FALSE TRUE AT1G51160.1|AT1G51160.2 synbindin, putative similar to synbindin, putative [Arabidopsis thaliana] (TAIR:AT5G02280.1); similar to Sybindin-like protein [Medicago truncatula] (GB:ABE85641.1); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Sybindin-like protein; (InterPro:IPR007233) 0.399161090241302 5.58366717527887 0.000437354742748520 1 7.08217693780292 16.2035898099319 0.399161090241302 0.0334279671727276
AT4G26610_at 5.8057082378393 6.30463708134231 5.76636940383664 5.6074117408597 6.09034727120101 6.29932145680178 6.77221206864279 6.72051639790737 6.78098177162538 6.67255874321245 6.7466956192837 6.07607220898167 6.64161592319159 6.89505918170144 5.75802411394186 6.22279041421631 5.53949575466486 5.98517028311814 7.07069397698462 0.216127697953004 0.205411984093578 0.20562078634223 0.215105970929267 0.210380442678935 0.214016171949299 0.205411984093578 0.212420093194183 0.219722969852891 0.211420625210175 0.208734629777187 0.210946526160725 0.213303254388935 0.214942153086512 0.209066250481117 0.205411984093578 0.228084495211342 0.217176044089186 0.211346181695036 4 4 + 13426616 13427129 13426886.818 13424555 13427325 + gene protein_coding_gene FALSE TRUE AT4G26610.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G55910.1); similar to stpk1 protein kinase [Solanum tuberosum] (GB:CAA62476.1); similar to protein kinase (GB:AAA33509.1); similar to G11A protein (GB:AAA33905.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.534101019072431 -5.5836196802777 0.00043737997332991 1 7.08212892187267 12.7080789246347 -0.534101019072431 0.0979770925390568
AT4G13050_at 6.40544703770568 6.10811739552888 5.22540708589608 5.36989682279702 5.76417857145585 5.03189873665688 6.71097128256927 6.24468472525472 6.62934402166387 6.38619663412531 6.59413727788331 6.7096734581837 5.85886353685251 6.16370366101937 6.68756735139693 6.05909491745022 5.47438960131086 5.59768283297052 6.70830181643355 0.173324483310096 0.171782949628380 0.187184029442291 0.177389480673018 0.172309635604222 0.187128612914473 0.175712332878669 0.178949764990099 0.189311361174250 0.174338648691095 0.173773845816113 0.180629637200753 0.174513574464633 0.17437083484503 0.175611194268817 0.173378777035486 0.179773751175232 0.175454023945644 0.173911363860505 4 4|0 +|/ 7618678 7619303 7619065.333 7617558 7619613 + gene protein_coding_gene FALSE TRUE AT4G13050.1 acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putative similar to ATFATA (ARABIDOPSIS FATA ACYL-ACP THIOESTERASE), acyl carrier/ acyl-ACP thioesterase [Arabidopsis thaliana] (TAIR:AT3G25110.1); similar to acyl-ACP thioesterase; oleoyl-[acyl-carrier protein] hydrolase [Brassica napus] (GB:CAA52069.1); contains InterPro domain Acyl-ACP thioesterase; (InterPro:IPR002864) -0.725467441918662 -5.5828867384427 0.000437769532671288 1 7.08138789187764 12.2164518257536 -0.725467441918662 0.160758292351726
AT1G80500_at 8.40871645873353 8.32521367134417 8.33008708032052 8.28907091008856 8.42118321377757 8.19651394551509 8.46149618061713 8.5403089301045 7.51553334320226 7.20305054021533 8.4698545307917 8.32752493678587 8.19184830587102 8.15081270874075 8.24637243778202 8.21832834694353 7.88442540831863 7.51276118727092 6.79768456768827 0.175126602207527 0.162380812171032 0.166797714014467 0.166889887808788 0.164436147294171 0.169530334240571 0.162180235763832 0.162003218298355 0.182786336653309 0.170919894429805 0.173599252837830 0.165187236735013 0.162954051784414 0.174852184238249 0.173618679595409 0.164958676984304 0.17653216388857 0.172452325420975 0.177383483109499 1 1|0 +|/ 30276091 30276895 30276453.1 30275421 30277560 + gene protein_coding_gene FALSE TRUE AT1G80500.1 intracellular transporter similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20930.1); similar to putative TRAPP subunit [Cynodon dactylon] (GB:AAT68208.1); similar to OSJNBb0116K07.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE05549.1); similar to Os02g0613600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047420.1); contains InterPro domain Sedlin, N-terminal; (InterPro:IPR006722); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.414215738168353 5.58011045609401 0.000439248568288312 1 7.0785801347199 16.0202390320701 0.414215738168353 0.044236634928876
AT1G01820_at 9.54514314268215 9.50905567346715 9.75748141766224 9.6168355750048 10.2511863188902 9.95669193969482 8.6906150221569 8.84065873385959 8.70814424058125 8.55495440710994 8.66607032743542 8.52497369221501 9.02118503586152 8.91931009127102 8.51808250895052 8.69193366676674 8.83723206488044 8.46080114201284 8.41625833037468 0.150132775601573 0.151840362232746 0.145968914972157 0.149911007063895 0.151005452779494 0.151528750132005 0.149439094746765 0.150950860261409 0.153989482026048 0.162687718390847 0.146874751156745 0.146341920941888 0.149840971372225 0.146607368071112 0.149119059807165 0.145540221202753 0.159008320094430 0.155465591382937 0.157253012273894 1 1|0 -|/ 296392 297591 296893.3 296001 298120 - gene protein_coding_gene FALSE TRUE AT1G01820.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to PEX11D [Arabidopsis thaliana] (TAIR:AT2G45740.3); similar to unknown [Lycopersicon esculentum] (GB:AAF75750.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.447171788295234 5.57357179887916 0.000442753570750322 1 7.07196210789521 18.1533255906920 0.447171788295234 0.062473360006629
AT3G11880_at 7.370722548632 7.67269248325925 8.17908236585923 8.08666504030729 7.92719951583849 7.50630493461544 7.00419665340211 7.22266162731355 6.23075552257394 6.02869264274075 6.69567497526193 6.18406925913318 6.68449187991923 6.5243454646758 6.07786431601605 6.82805805631719 6.51397121259807 6.548212087571 5.87529174282062 0.239818480454053 0.236631623759876 0.242944169404872 0.233226612874984 0.236668620317858 0.260944412682748 0.236082174319545 0.237501205452172 0.250407412873111 0.245098308826746 0.246759201022984 0.236737521550522 0.235004164210690 0.243704722206770 0.243500951583732 0.233801488403276 0.246777644765349 0.244265106388105 0.249553917061556 3 3 + 3752843 3753696 3753379.273 3751666 3754066 + gene protein_coding_gene FALSE TRUE AT3G11880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70770.1); similar to Os01g0128400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041912.1); similar to hypothetical protein [Platanus x acerifolia] (GB:CAL07978.1); contains domain FAMILY NOT NAMED (PTHR13448); contains domain gb def: F26K24.17 protein (PTHR13448:SF1) 0.534708619864086 5.57234219540415 0.00044341609591064 1 7.07071675667361 13.8971902507276 0.534708619864086 0.098596517899805
AT2G46400_at 6.68902252368275 7.29784196535008 9.12008531820245 9.1379417032977 6.27284651322048 6.24496029316749 3.72161281449247 4.4110078611924 4.66323309545237 3.91737308656869 3.37705967471333 3.05990617067696 2.93532470604972 3.45463281749638 3.43919915990995 3.56046603848239 3.08092222010176 3.60431963641386 3.53968837134575 0.306868161657171 0.307063887088845 0.319589516074931 0.317174015882976 0.313383714651469 0.317010433662908 0.301661262589439 0.310717865471052 0.302876790043155 0.303452903293531 0.303487003107015 0.308808569855796 0.313755967419927 0.302625377777595 0.301661262589439 0.301661262589439 0.32838236709015 0.310187680015668 0.301661262589439 2 2 - 19050790 19051406 19051042.636 19050487 19051899 - gene protein_coding_gene FALSE TRUE AT2G46400.1 WRKY46 (WRKY DNA-binding protein 46); transcription factor member of WRKY Transcription Factor; Group III Identical to Probable WRKY transcription factor 46 (WRKY DNA-binding protein 46) (WRKY46) [Arabidopsis Thaliana] (GB:Q9SKD9); similar to WRKY53 (WRKY DNA-binding protein 53), transcription factor [Arabidopsis thaliana] (TAIR:AT4G23810.1); similar to putative WRKY transcription factor 30 [Vitis aestivalis] (GB:AAR92477.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.718983892158772 5.57056175234733 0.000444377338999098 1 7.06891304971639 10.2889533677938 0.718983892158772 0.159268886645995
AT1G48630_at 7.63608764378267 8.13736458256105 6.9427309473986 7.23777702790776 6.63655020528095 6.52526627466245 8.66220799730215 8.74182363623443 6.36808410379112 7.32478858121702 7.01474432946044 8.36933943148905 7.0389283739042 6.92813214561573 8.55863962344913 7.09282321954601 6.91374607871531 7.12959906746823 7.35787002741868 0.193453150007715 0.198427391666606 0.194778320295779 0.192780412659745 0.193217224548848 0.201337622287905 0.192055457914797 0.194381353775743 0.212240720536179 0.199845115264924 0.203061317609649 0.190561443934654 0.190132678529801 0.195354894054127 0.193128367984187 0.195362982828315 0.203082804433449 0.198114784037295 0.196582193894121 1 1|0 -|/ 17986066 17986362 17986240.5 17985446 17986995 - gene protein_coding_gene FALSE TRUE AT1G48630.1 guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative similar to guanine nucleotide-binding family protein / activated protein kinase C receptor (RACK1) [Arabidopsis thaliana] (TAIR:AT3G18130.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.547480027463618 -5.56725084554082 0.000446170917954052 1 7.06555742962923 14.7638051749821 -0.547480027463618 0.103407007146171
AT1G31920_at 7.0049822106292 7.2961359498322 6.2369690822068 6.75205652761311 7.32141491464784 6.96134636049116 8.59734684408973 8.6753953074681 7.85467350927745 8.779281732982 8.1654986531748 8.91092472335256 8.10050132416095 8.39145313662541 8.38538504273033 8.98853378049106 8.18656965045733 8.1672543327157 8.95756437388408 0.230342631500668 0.224860602498476 0.235504072546145 0.237233580865761 0.221995961491618 0.228438296001996 0.221830303084465 0.232427757957315 0.266256746986594 0.224197473885452 0.222360962475997 0.221714289312444 0.225697142021756 0.225575804603246 0.222371929653693 0.221340782301450 0.228329926637212 0.234258307399493 0.219419560264643 1 1 - 11461994 11462411 11462218.364 11461835 11463828 - gene protein_coding_gene FALSE TRUE AT1G31920.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD32557.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.597004907508034 -5.56535309210425 0.000447202527697085 1 7.06363319579679 15.8269667092113 -0.597004907508034 0.120621273472725
AT1G07070_at 5.71987519179099 5.91983005475587 4.86972653447659 4.89914862310702 5.19312341863173 4.81731793152162 6.17518728946576 5.95030234657435 5.09194154643993 4.97110652245073 4.85617714561564 6.24596286348984 4.83257412154685 4.68103644971578 6.26960965585559 4.82953798593874 4.50338721061708 4.66322336727706 5.24439861461373 0.222016368569459 0.214105455605661 0.214105455605661 0.214105455605661 0.214961794113943 0.216838128961262 0.225839086869054 0.225889184844238 0.227824673713775 0.215823258255870 0.219621131535784 0.21778410315963 0.215670690889543 0.219098548785158 0.216305101423229 0.214105455605661 0.218960975844321 0.221811697597493 0.221234917749050 1 0|1 /|+ 2168915 2169665 2169418.2 2168563 2169850 + gene protein_coding_gene FALSE TRUE AT1G07070.1 60S ribosomal protein L35a (RPL35aA) Identical to 60S ribosomal protein L35a-1 (RPL35AA) [Arabidopsis Thaliana] (GB:Q9LMK0); similar to 60S ribosomal protein L35a (RPL35aC) [Arabidopsis thaliana] (TAIR:AT1G74270.1); similar to ribosomal protein L33 [Castanea sativa] (GB:AAK25760.1); contains InterPro domain Ribosomal protein L35Ae; (InterPro:IPR001780) -0.494381610770115 -5.56350328743273 0.000448210579126867 1 7.06175698244924 10.5493993377114 -0.494381610770115 0.083470959183079
AT1G10740_at 6.22639860408035 6.14228219360509 5.74135498705905 5.94524921746339 7.22502312289005 6.34902377221693 8.59393268934356 8.2841164954322 8.24754860268501 7.90788423711113 7.92750217367409 7.39442702165765 7.82718669210105 7.95194820932182 7.5655620764663 7.27338545412784 7.78664388050512 7.52576975326031 8.2506619569737 0.218638234712748 0.213543008739243 0.242268940222956 0.221041973640226 0.214004393127499 0.217367108179503 0.212409726924115 0.209278274264977 0.229654470563073 0.214598795560666 0.219022975040484 0.209278274264977 0.214374710467116 0.217134953541326 0.216207165886517 0.209278274264977 0.209278274264977 0.22198455071349 0.21262041968511 1 1 - 3568445 3569055 3568857 3568170 3570761 - gene protein_coding_gene FALSE TRUE AT1G10740.1|AT1G10740.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23330.1); similar to Os05g0408300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055523.1); similar to Lipase precursor (Triacylglycerol lipase) [Contains: Lipase 86 kDa form; Lipase 46 kDa form] (GB:P04635); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) -0.737665747662638 -5.5626541923839 0.000448674124018122 1 7.06089556782662 14.7093816802093 -0.737665747662638 0.165265787249125
AT4G28260_at 8.51859915190446 8.69781112067041 7.81683233793885 7.88101096800051 9.00184673723082 8.50623211787214 8.51643995464953 8.25855103669071 9.14670498822801 8.89771804324423 8.13625141964652 8.35625905902971 8.10725703984988 8.4259179915207 7.82534164979338 8.41623500223108 8.0033937502085 8.18126108773428 9.17022663915855 0.135190371587479 0.133602714231604 0.137544418831060 0.135675778493953 0.135599054880761 0.135698845405136 0.138780748300466 0.133605491971993 0.140219905341861 0.131834912758178 0.136689992731245 0.129678035506188 0.142288818740296 0.13656851008801 0.161836725242943 0.128610459086496 0.144282337175496 0.141376829699441 0.134765619111886 4 4 + 14006121 14006732 14006349.455 14004491 14006976 + gene protein_coding_gene FALSE TRUE AT4G28260.1|AT4G28260.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47837.2) -0.543215020463349 -5.55956799598133 0.000450363378477179 1 7.05776354670537 17.0261851857257 -0.543215020463349 0.102142775242986
AT3G04090_at 10.2147547011818 10.4187658168954 10.9156660521915 10.7639929083862 10.8916204608335 10.7397539923167 10.150725265537 10.2275592925856 9.94242346898237 9.55904861639785 9.92349532540831 9.6190249063097 10.2342506688363 10.3371385754816 9.608101175651 9.9519842935819 9.72471642102923 10.1105658644797 9.4748987863599 0.111508204229515 0.109307277614983 0.115857267633884 0.112525278713868 0.112879494663861 0.116363665386893 0.108661798433736 0.111216801871415 0.115160898524413 0.112639038739104 0.111737313616752 0.11225185948534 0.110852051455932 0.107819996887029 0.109380752530826 0.11382226307912 0.127408010032973 0.111711079154154 0.111740481706799 3 3|0 -|/ 1072397 1073865 1073030 1072099 1074136 - gene protein_coding_gene FALSE TRUE AT3G04090.1 SIP1;1 (SMALL AND BASIC INTRINSIC PROTEIN 1A) Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER. Identical to Probable aquaporin SIP1.1 (Small basic intrinsic protein 1.1) (SIP1.1) [Arabidopsis Thaliana] (GB:Q9M8W5); similar to SIP1,2 (SMALL AND BASIC INTRINSIC PROTEIN1B) [Arabidopsis thaliana] (TAIR:AT5G18290.1); similar to small basic intrinsic protein 1 [Vitis vinifera] (GB:ABD46741.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.427338223824602 5.55730316464542 0.000451607468752804 1 7.0554640416153 20.3390797834546 0.427338223824602 0.0529423318676331
AT1G63500_at 6.12071038357277 5.87227016803479 6.05159541535854 6.31528194939943 6.43280250520578 6.29569203371247 5.89231371651454 5.90607313578138 5.91251428856505 5.08326425604828 5.94938124891845 5.82174662462173 6.33236741938425 6.15087022932405 6.19313762690373 6.13378843171647 6.13319758141838 6.2169510552676 5.59884906462454 0.179138811491404 0.171403729045705 0.182817936128824 0.184357490493086 0.171444739966800 0.175608587561776 0.175853148104689 0.169121188161042 0.176946139508970 0.189412233350841 0.170925903701026 0.172727283963789 0.169052164268263 0.181701190585468 0.174537443127513 0.171109686340604 0.178519492420555 0.177137188109360 0.170456289582198 1 1|0 +|/ 23561195 23562001 23561644.222 23559351 23562562 + gene protein_coding_gene FALSE TRUE AT1G63500.1 protein kinase-related similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G41260.1); similar to Protein kinase [Medicago truncatula] (GB:ABE92129.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.455444307862447 5.55541873074933 0.000452645462971722 1 7.05355008339663 11.9348286952509 0.455444307862447 0.0670777673158299
AT1G61730_at 7.33988410192495 7.45612708158997 7.3991796808825 7.25146666179283 7.50318932829993 7.44600579661772 6.77731240659347 7.01070301591747 6.55103394328414 6.37439344698008 7.2942104814071 7.25883141210461 7.19308196273624 6.85497237313627 7.1602057808357 6.876353137407 6.99792493867938 6.66854475207884 6.38972207415554 0.115743256141208 0.111534306140652 0.119396712048490 0.115892858448597 0.113736860119663 0.120442899232571 0.11312313412882 0.112215281966184 0.1246763280235 0.116296317184049 0.114380177420708 0.109461913049152 0.109461913049152 0.122393094413993 0.118566586323558 0.110987707054190 0.111691376015964 0.117547714708595 0.125032368955255 1 1 - 22797132 22797685 22797347 22796884 22798368 - gene protein_coding_gene FALSE TRUE AT1G61730.1 DNA-binding storekeeper protein-related similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G00390.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.426793082691671 5.55369422315768 0.000453597648036998 1 7.05179802028127 14.0111828890047 0.426793082691671 0.0527952027931896
AT1G27450_at 10.2032140934055 10.2652894274855 10.3743281142547 10.3385484729020 10.0133919271310 9.90242597709253 9.46495943087646 9.74174474174171 8.82661648347113 9.13694397235335 9.520677481073 9.88352826286815 9.38636255748094 9.58933790317771 9.91228937338479 9.3584098118211 9.24610381839757 9.64765854925764 8.89248777722902 0.124325710137371 0.124360995043558 0.127256744556562 0.127986949163308 0.125852909005121 0.124755891663504 0.124839540806757 0.122128227667376 0.136731941073611 0.137320497383895 0.125745247824931 0.122417881769970 0.125120760700977 0.124050655336091 0.127926369850068 0.128382216039182 0.138847293720545 0.125506872331593 0.138822260926865 1 1|0 +|/ 9532436 9533754 9532939.778 9531826 9534101 + gene protein_coding_gene FALSE TRUE AT1G27450.1|AT1G27450.2 APT1 (ADENINE PHOSPHORIBOSYLTRANSFERASE 1); adenine phosphoribosyltransferase|APT1 (ADENINE PHOSPHORIBOSYLTRANSFERASE 1) Adenosine phosphoribosyl transferase(E.C:2.4.2.7), involved in the one-step salvage of adenine to AMP. Identical to Adenine phosphoribosyltransferase 1 (EC 2.4.2.7) (APRT 1) (APT1) [Arabidopsis Thaliana] (GB:P31166;GB:Q8LGF6;GB:Q9FZJ0); similar to APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3), adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G22570.1); similar to adenine phosphoribosyltransferase [Brassica napus] (GB:AAP85303.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) 0.427200795732932 5.55240377400391 0.000454311598307545 1 7.05048661566742 19.2980187967947 0.427200795732932 0.0530736620198214
AT3G04120_at 11.9287467703916 12.0309851218378 12.2917342496919 12.2984155982520 11.9586354002308 11.6298717305643 12.0324515748368 12.0298863911055 11.1619302778240 11.1917703698834 11.9673714528990 12.1872921309842 11.9378201405417 11.9518691997121 12.1759509370124 11.8182113509191 11.7156122816121 11.6632186832734 10.9075747185496 0.07382017555722 0.0715029662207916 0.0737638020974126 0.0723367227786985 0.0733378742448632 0.0791911063293672 0.073546086934333 0.0713223625375294 0.0761970970307553 0.0746009542883625 0.0713223625375294 0.0716472824336055 0.0737266354557114 0.0747976884322562 0.0719489113799877 0.0713223625375294 0.0807672938485456 0.0758298236068982 0.0749822450300204 3 3|0 +|/ 1082264 1083103 1082722.889 1080957 1083537 + gene protein_coding_gene FALSE TRUE AT3G04120.1 GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase encodes cytosolic GADPH (C subunit) involved in the glycolytic pathway but also interacts with H2O2 potentially placing it in a signalling cascade induced by ROS. Identical to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (EC 1.2.1.12) (GAPC) [Arabidopsis Thaliana] (GB:P25858;GB:Q42352;GB:Q9M8W8); similar to GAPC-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G13440.1); similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GB:P04796); similar to cystolic glyceraldehyde-3-phosphate dehydrogenase (GB:AAA32794.1); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) 0.439611631754381 5.55198999108144 0.000454540786318428 1 7.05006605252428 23.5322208850496 0.439611631754381 0.0595945216745416
AT2G32500_at 6.71744159406857 6.9701263405494 6.69698923824708 6.3052232401425 7.03484901578881 6.37739701217212 9.00992576844016 8.78634537925471 8.3247275064003 8.5339198368079 8.57083728875348 8.76103103517555 7.83687660908617 8.38078448670564 8.47307888799321 8.71860356081241 7.42244860236522 8.43995702340316 8.3336046302145 0.232643905466323 0.215288175876814 0.222761819662790 0.216667143658124 0.216209039448151 0.218526243318023 0.224487063999694 0.219650380092568 0.22042971980504 0.233620410027825 0.215478198228431 0.210904643893879 0.221452851411052 0.22354911833075 0.219185763119939 0.212307897734018 0.238490128147291 0.225747338785877 0.226232802696328 2 2|0 -|/ 13802448 13803413 13802892.444 13801501 13804304 - gene protein_coding_gene FALSE TRUE AT2G32500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31670.1); similar to Os03g0110900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048719.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097) -0.669655140838977 -5.5505620091634 0.000455332693357740 1 7.04861444483293 15.5987219542135 -0.669655140838977 0.144742563473186
AT1G30090_at 8.02872955074892 7.95025351119618 8.03314966010336 8.2916810341236 8.62521424508836 8.3486848850201 7.74785287497677 7.95087283678396 7.41347228164677 7.49067804863562 8.1385444166596 7.88797451650141 7.92389388820026 8.02766040906236 7.30136085131825 8.01232882928072 7.88178108396075 7.41275101827443 6.93660502056518 0.157162650874096 0.159043891731145 0.16589675780489 0.155192137508042 0.168833313180756 0.162553889497237 0.155192137508042 0.161893641547897 0.182313812365414 0.158802913223323 0.158434950962716 0.155192137508042 0.163396110211837 0.163680693563617 0.163173368326031 0.156360694734787 0.168260779850063 0.170742771502694 0.176685918204462 1 1 - 10559763 10560244 10560005.182 10559545 10561407 - gene protein_coding_gene FALSE TRUE AT1G30090.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G24540.1); similar to Os07g0153400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058912.1); similar to TO42-3rc [Taraxacum officinale] (GB:ABA26994.1); similar to Os06g0655500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058250.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.474145177849381 5.55027769291963 0.000455490544540392 1 7.04832538260049 15.6738241548917 0.474145177849381 0.0755681492253305
AT1G07630_at 7.7798057937045 8.10296505990681 8.08669328353638 8.08502017108105 8.20144018838666 7.8148296863879 6.22568180462577 6.67585996566322 6.1795239997745 5.74504694968343 6.4213759574757 6.54754226686507 5.66778995981657 6.77758114346968 6.13428395491935 6.20275800470970 5.74071163717489 6.30012901728423 5.7975207029622 0.246773561003668 0.244299942412494 0.244303621961413 0.246271354547848 0.251865970038636 0.259925114284455 0.248619129554554 0.240037685871613 0.259907230507487 0.244033792703108 0.240232373533772 0.240722567623044 0.240037685871613 0.247980750302371 0.251936574318198 0.244804015549471 0.269087083295477 0.241846614467847 0.240037685871613 1 1 + 2350608 2351172 2350917.636 2349094 2351689 + gene protein_coding_gene FALSE TRUE AT1G07630.1 PLL5 (POL-like 5); protein phosphatase type 2C Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves. similar to PLL4 (POLTERGEIST LIKE 4), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT2G28890.1); similar to Protein phosphatase 2C, putative [Medicago truncatula] (GB:ABE91024.1); similar to Os03g0275100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049705.1); similar to Os03g0821300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051726.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.583787642473639 5.54360131807401 0.000459214461938305 1 7.04153354970371 13.6872296825888 0.583787642473639 0.116932047430310
AT1G18390_at 6.48379702874643 6.68258326116033 6.77347025523362 6.69239223926654 6.35936036612227 6.12878494461789 3.90424523110457 3.88738185912743 4.99715343681588 4.33220033790584 4.17331613312215 4.41754080603532 4.0891331737933 4.52472520108512 3.81916165720079 3.67741782474546 4.77802436938097 4.17085934134763 4.4613933260748 0.251777307177128 0.248616390852611 0.245802916920843 0.244891190260034 0.243276690485698 0.255685878361271 0.243276690485698 0.246794072386257 0.247653065767068 0.254497854883007 0.243276690485698 0.247448573365212 0.246488692460865 0.246043209334538 0.249693699682296 0.2445904957811 0.253389467806511 0.250667964835742 0.243276690485698 1 1 + 6329282 6329868 6329581.818 6327456 6329928 + gene protein_coding_gene FALSE TRUE AT1G18390.1 protein kinase family protein similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G66880.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041957.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.429178359674364 5.54163128886048 0.000460319635231306 1 7.03952798084218 10.2655959049746 0.429178359674364 0.0545984061325043
AT3G18480_at 7.85485236923456 8.18991689702702 7.65835680047419 7.78341862639514 7.84645463851057 7.67168490155075 8.1713725113622 8.08196032866434 7.9652262252205 7.59401804220649 7.34265933261434 7.04053880381488 7.10899305786397 6.94853017833284 7.30113285030597 7.22068248417744 6.65046766316014 7.21937866817386 7.52142028355686 0.189509968964667 0.177814423597058 0.182409899771752 0.180115162058636 0.182391569439902 0.187991566362575 0.177814423597058 0.182145171513588 0.18381995185334 0.182298324524050 0.179977399624074 0.180904875622754 0.180737775607597 0.190996303179134 0.181295437601882 0.177814423597058 0.189502779033792 0.191663948138209 0.180694422543635 3 3|0 +|/ 6340619 6341420 6341064.7 6336742 6341794 + gene protein_coding_gene FALSE TRUE AT3G18480.1 CCAAT displacement protein-related / CDP-related Identical to Protein CASP (CASP) [Arabidopsis Thaliana] (GB:Q9LS42;GB:Q93ZW7); similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98508.1); similar to CASP C terminal, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95655.1); similar to Prefoldin [Medicago truncatula] (GB:ABE91623.1); contains InterPro domain CASP, C-terminal; (InterPro:IPR012955) -0.462026877680942 -5.54123720424634 0.000460541062323626 1 7.03912670640064 15.3060534992190 -0.462026877680942 0.0706028453595785
AT1G22690_at 8.46099574109508 8.71238648859309 5.98560492279659 6.25872357194354 9.00116980470787 8.64867581928495 4.69703616097997 4.65413973836306 8.33768527320854 6.85800056070537 8.23029265658062 9.0655599456601 7.25451006299164 7.18510600981094 8.19549129693028 8.7448269538974 5.78871609594561 7.73920236306279 7.62157513376045 0.231956496867486 0.233341309455156 0.243956808364887 0.240862749959377 0.240996295703286 0.231591284185002 0.254315038955880 0.247735366784115 0.239638256543921 0.233685742074230 0.229384609927370 0.231704677788187 0.234604589592417 0.229384609927370 0.229384609927370 0.230882899534679 0.245584499385223 0.238816496028885 0.229384609927370 1 1|0 +|/ 8027339 8027902 8027649.375 8027287 8028114 + gene protein_coding_gene FALSE TRUE AT1G22690.1 gibberellin-responsive protein, putative similar to GASA2 (GAST1 PROTEIN HOMOLOG 2) [Arabidopsis thaliana] (TAIR:AT4G09610.1); similar to snakin2 [Solanum tuberosum] (GB:CAC44012.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.506056757321954 5.54075241839388 0.000460813611832902 1 7.03863303912639 14.7429499454712 0.506056757321954 0.0888974274127084
AT4G31850_at 8.33781330100657 8.61731952246436 7.23001477161645 7.60796782631792 8.48647193914778 7.76772186833576 8.81408584948297 8.78552721369916 8.7518564717212 8.63422028452814 7.82014035763307 8.34944152607564 8.12148487168573 8.31789801603344 8.38954551052374 8.68545565395155 7.73133427760503 8.13135277675765 8.68281586214866 0.149423955917717 0.147665019697825 0.154999895674774 0.153901802658658 0.143801778982234 0.152516016012474 0.145574610212241 0.146085267382045 0.142024339179549 0.148896273413344 0.149470736105653 0.145674205591872 0.149103251168197 0.145559702891682 0.149891801983035 0.145621826848752 0.150594462137331 0.151609520707623 0.142035374194865 4 4 + 15405771 15406330 15406100.818 15403026 15406499 + gene protein_coding_gene FALSE TRUE AT4G31850.1 PGR3 (PROTON GRADIENT REGULATION 3); binding encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to Os10g0421800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064626.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47632.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.680970809662448 -5.53995285169034 0.000461263517705855 1 7.03781873540198 16.6473465348001 -0.680970809662448 0.148705168687682
AT1G59870_at 11.6624664372078 12.326617011409 11.8970748615375 12.0921354438468 12.3360807747413 11.8779529149848 10.0557025288171 10.1566641235612 11.7765885435184 11.0418111215225 11.8034549149091 11.8851364472630 11.4320561757590 11.7656164492323 11.1234167307194 11.4564882963476 10.9118749192446 11.8878486407271 10.7737455713956 0.134846810820893 0.116350066497237 0.120000327415727 0.118210202920405 0.116971088064471 0.121966249123218 0.122707216141958 0.116334014194843 0.119305285888860 0.112864858278010 0.116841559227128 0.116683653228541 0.115312730714442 0.117419193175665 0.121799746032904 0.115228745673956 0.132690385059418 0.114804611805467 0.118774383793857 1 1 + 22042945 22043478 22043160.545 22038171 22043703 + gene protein_coding_gene FALSE TRUE AT1G59870.1 PDR8/PEN3 (PLEIOTROPIC DRUG RESISTANCE8); ATPase, coupled to transmembrane movement of substances ATP binding cassette transporter. Localized to the plasma membrane in uninfected cells. In infected leaves, the protein concentrated at infection sites. Contributes to nonhost resistance to inappropriate pathogens that enter by direct penetration in a salicylic acid?dependent manner. Required for mlo resistance. Identical to Pleiotropic drug resistance protein 8 (PDR8) [Arabidopsis Thaliana] (GB:Q9XIE2;GB:Q8VXW5); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to ATPDR1/PDR1 (PLEIOTROPIC DRUG RESISTANCE 1), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT3G16340.1); similar to ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15210.1); similar to Pleiotropic drug resistance protein 12 (GB:Q5Z9S8); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59565.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE84767.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.668151649912632 5.53902959010591 0.000461783621566126 1 7.03687831951428 22.9158959206402 0.668151649912632 0.144707125631103
AT3G04590_at 5.65067577851562 5.91687826155428 5.94992459374236 5.8099261300083 6.66579824249794 6.34509241096534 6.71395537736419 6.51517796153227 5.83995545089573 5.20776741993784 6.54318627229557 6.16205812295347 6.7747923747612 6.56860819806977 6.20564898252325 6.46953044717602 6.55116629417789 5.66555796152617 5.0823191468048 0.260803624739944 0.253955343026872 0.261074018842702 0.253955343026872 0.254922037287543 0.267920127965441 0.263850347935907 0.258028157376383 0.266499220740717 0.259822792853647 0.260787046132898 0.258637129695873 0.255372110601024 0.253955343026872 0.255090338036537 0.255136443843794 0.268784212787603 0.261671852893319 0.257538754540645 3 3 - 1239539 1240118 1239771.5 1238859 1241646 - gene protein_coding_gene FALSE TRUE AT3G04590.1|AT3G04590.2 DNA-binding family protein similar to DNA-binding family protein / AT-hook protein 1 (AHP1) [Arabidopsis thaliana] (TAIR:AT2G33620.3); similar to SAP1 protein [Antirrhinum majus] (GB:CAA10643.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637)|similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G28590.1); similar to SAP1 protein [Antirrhinum majus] (GB:CAA10643.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.492200704350593 5.53807330337364 0.000462323004460383 1 7.03590410955865 12.0680532216383 0.492200704350593 0.0835027798213094
AT3G01470_at 9.70994274453532 9.6287050092393 10.2376395339728 10.2045380347118 10.6818190777195 10.3686425697813 10.1120366529656 10.0162210412101 9.32496936596434 9.52670348544069 9.81463387591448 9.7225993918646 10.2565488663787 9.89208146257488 9.5472040272749 9.95118486121478 10.3195903948215 10.0498020100297 9.88051639980536 0.09196731396002 0.0871113043127088 0.0876449354810969 0.0876253455455077 0.0903776960285082 0.0898142250361291 0.0903634241674874 0.0914816122005755 0.0934873140250684 0.0923817162213808 0.0899436850062445 0.0908779473055849 0.0926268050111936 0.0907956053676894 0.0892359890309669 0.0872817498012602 0.0918801487607057 0.088190094915471 0.0882065338129506 3 3|0 -|/ 182660 183432 183001.5 182457 184410 - gene protein_coding_gene FALSE TRUE AT3G01470.1 ATHB-1 (Homeobox-leucine zipper protein HAT5); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) transcriptional activator involved in leaf development. Identical to Homeobox-leucine zipper protein HAT5 (Homeodomain-leucine zipper protein HAT5) (HD-ZIP protein 5) (Homeodomain transcription factor ATHB-1) (HD-ZIP protein ATHB-1) (HAT5) [Arabidopsis Thaliana] (GB:Q02283); similar to ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 13), transcription factor [Arabidopsis thaliana] (TAIR:AT4G40060.1); similar to homeodomain leucine zipper protein CPHB-5 [Craterostigma planta (GB:AAL57495.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Trp repressor/replication initiator; (InterPro:IPR010921); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.436621318123924 5.53715889704248 0.000462839408316325 1 7.0349724171262 19.8807440971816 0.436621318123924 0.0586743197815642
AT1G32460_at 10.9933593651785 11.1286260368593 11.1459023823665 11.1945038773676 11.3914717026458 11.1746692245001 10.2928550884677 10.2652840025867 10.2496648865030 10.2693184099532 10.7106211504325 10.4354938039556 10.4646286556078 10.5648558936062 10.2522633116397 10.7589796906855 10.4813423627541 10.3752230978144 10.1911801926105 0.0629549992741284 0.0624266062061305 0.0619654839776133 0.0629099027856258 0.0623290116706001 0.0611827693039688 0.061536304411882 0.0661106105032525 0.0699713526326948 0.0626086658950054 0.0611827693039688 0.0615453136222401 0.0619261123914542 0.062503558179076 0.065355799565224 0.0630155750864901 0.0730423141641932 0.0661762855992851 0.0625555722884478 1 1 + 11738860 11739087 11738969.091 11738098 11739306 + gene protein_coding_gene FALSE TRUE AT1G32460.1 unknown protein 0.412655253118336 5.53706217711097 0.000462894066948259 1 7.03487386033197 21.3194075394137 0.412655253118336 0.0452671628519438
AT1G32700_at 10.2212070564262 10.4281334703619 10.4715427386906 10.4653136703778 10.4917204177328 10.4583582693671 9.06232620308987 9.35729676047939 9.3135047356382 8.98198885480741 9.37910740300011 8.91487139604376 9.48670431425097 9.2516982656387 8.49214293261995 9.6695598721378 9.78013142990693 9.48260075722223 9.07203378068532 0.144196059263690 0.143726415849691 0.147920327983241 0.148040208445140 0.145595642322799 0.148787284024422 0.14044564489006 0.141445832454854 0.145046354408717 0.150318651823885 0.141918321768878 0.144265071631431 0.145231141385774 0.144762345908557 0.143033233534514 0.136870053258670 0.149718825903244 0.142240145820909 0.150924823905815 1 1|0 +|/ 11827976 11829386 11828605.4 11827413 11829739 + gene protein_coding_gene FALSE TRUE AT1G32700.1|AT1G32700.2 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT4G17900.1); similar to Zinc finger, B-box [Medicago truncatula] (GB:ABE79196.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734)|similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT4G17900.2); similar to putative zinc-binding protein [Platanus x acerifolia] (GB:CAL25342.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 0.444542912047504 5.53679287176385 0.000463046294640408 1 7.03459943193593 19.3342929083471 0.444542912047504 0.0626300117460997
AT1G20440_at 11.2280304520929 11.3641103948687 10.7623986273269 11.0029290847348 11.6953264344993 11.6603000725755 10.7142031936890 11.0792513213121 9.41917978109273 9.79820917143968 10.3502639038524 10.0218264036366 10.7595590229674 10.5009880591897 9.54917703582245 11.0920860122972 10.3818454596757 10.4255785306863 9.5966386215384 0.100494208220965 0.0989726487345402 0.101683351083439 0.099181667645344 0.0989780907106438 0.104297595375153 0.103507977949042 0.101090334660804 0.108751097506984 0.0978769710406834 0.0982188444632032 0.0992974647026283 0.0988085008978982 0.0959140836775346 0.103042531351303 0.0980992007945271 0.105913764420369 0.0972294110558638 0.100784573262337 1 1|0 -|/ 7084821 7085349 7085015.1 7084399 7085762 - gene protein_coding_gene FALSE TRUE AT1G20440.1 COR47 (cold regulated 47) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. Cold regulated gene, amino acid sequence homology with Group II LEA (late embryogenesis abundant) proteins. Also responds to osmotic stress, ABA, dehydration and inhibits e.coli growth while overexpressed. COR47 and RAB18 double overexpressor plants are cold tolerant. Identical to Dehydrin COR47 (Cold-induced COR47 protein) (COR47) [Arabidopsis Thaliana] (GB:P31168;GB:Q39059); similar to ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) [Arabidopsis thaliana] (TAIR:AT1G20450.1); similar to dehydrin cor29 [Capsella bursa-pastoris] (GB:AAS55384.2); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.482164704892889 5.53605895556028 0.000463461425927739 1 7.03385149066259 21.1832394034072 0.482164704892889 0.0794657581965886
AT3G57070_at 6.9881487087134 7.40013649071844 6.45915527422237 6.06409133975109 7.46334029959174 7.21298438246307 8.17577650324483 8.19387641248763 8.07165388028328 8.13079674241555 8.08336039641466 8.0673164329364 8.03486136553552 7.9941147187889 6.95556946449116 8.04293654864574 7.35846981022588 8.22633820863106 8.00697540516668 0.190187251455744 0.182225905140437 0.197102894264035 0.209917793210056 0.183550409780489 0.186367298694107 0.181351406618612 0.182649895871322 0.189597678774654 0.178336991227662 0.183466510909055 0.188591432164394 0.188889660664754 0.179476763957853 0.191438348410385 0.181840888928467 0.195092647491455 0.178336991227662 0.181094415377144 3 3 + 21135809 21136376 21136015 21134903 21136626 + gene protein_coding_gene FALSE TRUE AT3G57070.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G41330.1); similar to Thioredoxin fold [Medicago truncatula] (GB:ABE87618.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.557014756265258 -5.53603315872034 0.000463476025001975 1 7.03382519915354 15.202278448481 -0.557014756265258 0.107908309761317
AT4G03120_at 6.40813869002771 6.2608096478885 6.63511727292197 6.59039034877005 6.83093990179504 6.77746401948264 5.85069668747207 5.97304122340262 6.37446799297249 6.05186296750843 6.40109705557983 6.04936817946081 6.78230544268008 6.33017508755564 6.32490271005379 6.35321827357078 6.51745486085392 6.29573746909129 6.08684386187898 0.213426746786379 0.221224229435466 0.209105784623427 0.214730897704989 0.230189061256369 0.217043703907324 0.230201696968252 0.219404759642139 0.214195975031708 0.219112571107289 0.209183391302195 0.209105784623427 0.215875164980994 0.211585495669431 0.209515583202578 0.209105784623427 0.219442556747337 0.212195471799360 0.214399984956157 4 4|0 +|/ 1385873 1387294 1386907.111 1385660 1387739 + gene protein_coding_gene FALSE TRUE AT4G03120.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G61080.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT2G15880.1); similar to Os02g0266100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046503.1); similar to similar to u1 small nuclear ribonucleoprotein C [Solanum lycopersicum] (GB:BAD95791.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690); contains InterPro domain Zinc finger, U1-C type; (InterPro:IPR013085) 0.398015217140252 5.53512572876203 0.000463989881682893 1 7.03290029550925 12.6922450534579 0.398015217140252 0.0352684385295231
AT3G50670_at 8.08123284719691 7.96463560015525 7.71289465998664 7.60972037116301 7.64222795591908 7.8445227271071 7.7124147731675 7.98466502016742 8.25454558046862 8.51860875943185 7.60138070535043 7.8179899360624 8.01514420719778 7.75887101763818 7.87202506458965 8.1232382210194 7.97932277935966 7.65077609993153 8.77298865839713 0.126114394741442 0.131633524775272 0.132027298811274 0.131112937933156 0.133801425096151 0.134387629071608 0.124889201388701 0.127761570522027 0.130859099420444 0.133810976199845 0.131443625979215 0.124889201388701 0.128980864611737 0.130402676864184 0.126546552628186 0.126830921600045 0.132807203076018 0.135643074435387 0.130727689795862 3 3 - 18837543 18838045 18837794.091 18837281 18840599 - gene protein_coding_gene FALSE TRUE AT3G50670.1|AT3G50670.2 U1-70K (SPLICEOSOMAL PROTEIN U1A); RNA binding Encodes U1 snRNP 70K Identical to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K) (RNU1) [Arabidopsis Thaliana] (GB:Q42404;GB:Q42378); similar to U1 small nuclear ribonucleoprotein 70 kDa, putative [Arabidopsis thaliana] (TAIR:AT2G43370.1); similar to putative U1 snRNP 70K protein [Trifolium pratense] (GB:BAE71300.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to U1 small nuclear ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70) (U1-70K) (RNU1) [Arabidopsis Thaliana] (GB:Q42404;GB:Q42378); similar to U1 small nuclear ribonucleoprotein 70 kDa, putative [Arabidopsis thaliana] (TAIR:AT2G43370.1); similar to U1 snRNP 70K truncated protein-related [Medicago truncatula] (GB:ABE78863.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.448216563583358 -5.53195494388209 0.000465790311932294 1 7.02966733534432 16.0029014960209 -0.448216563583358 0.0645851559218997
AT4G39200_at 9.48627023882676 9.61918744968334 8.66176251539583 8.85061964219028 9.16505827250178 9.22611876866386 9.19206628837404 9.46153012948248 9.75685592301242 9.35925461954135 9.22431136512754 9.4450541094811 9.01090841604926 9.2483086406009 9.71877078203938 8.79554324056732 8.72211392162949 8.93170230051077 9.56357434608424 0.122890094532114 0.115225378087723 0.122119124778813 0.115953149686729 0.117638172365859 0.118412146473975 0.116236656003885 0.116411300333718 0.117722317092887 0.117791011197123 0.112358575920971 0.119957594234073 0.126728793098071 0.117819636158404 0.124116779729637 0.115267047087088 0.116414386239750 0.122747528528140 0.117677002090916 4 4 + 18257582 18258394 18258084.818 18257330 18258674 + gene protein_coding_gene FALSE TRUE AT4G39200.1 40S ribosomal protein S25 (RPS25E) Identical to 40S ribosomal protein S25-4 (RPS25E) [Arabidopsis Thaliana] (GB:Q9T029); similar to 40S ribosomal protein S25 (RPS25B) [Arabidopsis thaliana] (TAIR:AT2G21580.1); similar to S25 ribosomal protein [Medicago truncatula] (GB:ABE85391.1); contains InterPro domain S25 ribosomal protein; (InterPro:IPR004977) -0.443339796391165 -5.52979592207916 0.000467020606988626 1 7.02746498270178 18.5563186930798 -0.443339796391165 0.0623172571968632
AT2G25110_at 9.46053320723961 9.67243158508841 10.2344243803883 10.2439942843966 9.6075493393801 9.3713799580069 8.75807273374801 8.4856535678854 8.1546379935097 8.3073633790305 8.28320415781417 8.56134486935097 8.17487035639083 8.5755837476398 8.69313307453277 8.29292859622342 8.1702769198457 8.24217213953268 8.18087017433334 0.175633260782325 0.175923328286847 0.176552393950603 0.177933413183301 0.170021319183187 0.180238400547183 0.166779129666861 0.168030952955210 0.176845473454518 0.176426489285035 0.170253023687795 0.170183564968909 0.177333374120421 0.181372454545738 0.169382676216491 0.166141763027351 0.186619727262743 0.175074543127808 0.174938034357979 2 2|0 +|/ 10691795 10692875 10692217.4 10691214 10693164 + gene protein_coding_gene FALSE TRUE AT2G25110.1 MIR domain-containing protein Identical to Stromal cell-derived factor 2-like protein precursor (SDF2-like protein) [Arabidopsis Thaliana] (GB:Q93ZE8;GB:O81720;GB:Q9SEZ5); similar to MIR [Medicago truncatula] (GB:ABE79257.1); contains InterPro domain MIR; (InterPro:IPR003608) 0.465031467047201 5.52908838086113 0.000467424562801636 1 7.02674306595581 17.7734947561621 0.465031467047201 0.0723899644249906
AT1G16260_at 9.12664859614105 9.13951558883977 8.92869155683825 8.97010069524145 8.68988148763282 8.76581134108584 8.43398431420163 8.40653296402556 9.10238342317527 8.4641169155542 7.97253029942908 7.9861880710213 8.17250818118714 8.09662770189255 7.50091334259167 8.36377483295236 8.40243086016353 8.36744198227213 9.21206547567388 0.160641872584344 0.150979733747089 0.151843124598533 0.155660695992354 0.155113555224690 0.151930884670455 0.155065576272797 0.157917664204141 0.15938925167935 0.162680640498932 0.155775751670355 0.157168090346652 0.163406771037543 0.159297714695681 0.175544413768686 0.154898732099656 0.152352684117120 0.157159067399799 0.150979733747089 1 1 - 5559713 5560169 5559917.909 5559573 5562107 - gene protein_coding_gene FALSE TRUE AT1G16260.1 protein kinase family protein Identical to Wall-associated receptor kinase-like 8 precursor (EC 2.7.11.-) (WAKL8) [Arabidopsis Thaliana] (GB:Q9SA25); similar to RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1), kinase [Arabidopsis thaliana] (TAIR:AT1G79670.1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) -0.378217895732405 -5.51801196253368 0.000473798371540709 1 7.01543030746825 17.3246410748707 -0.378217895732405 0.0158599624018749
AT4G25620_at 6.36751255937709 6.92390567786691 4.80267943813172 5.22344672535016 6.218052397653 6.57893458916538 6.38096557660541 7.14343729678226 7.43248488687882 6.23054963156127 6.7597361090179 6.1341764011856 6.17506228563259 6.49163480884318 6.17338751825737 6.49084066852336 5.66365053536199 6.47263354132247 7.0976824688185 0.189119174766777 0.188996161769821 0.202343473930291 0.199503458869556 0.195857318520100 0.193053459931777 0.19025201449702 0.190420439562023 0.197612968487964 0.196142249616520 0.188714042232059 0.193551794073348 0.200580021042761 0.188826232755443 0.194379551747489 0.188714042232059 0.194321655368152 0.188741965362942 0.188714042232059 4 4 - 13067457 13068019 13067779.364 13067195 13069688 - gene protein_coding_gene FALSE TRUE AT4G25620.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G52430.1); similar to Os02g0822000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048555.1); similar to unknown [Thellun (GB:ABJ98061.1) -0.811637876158827 -5.51389158122741 0.000476193552616319 1 7.01121658749396 12.8125563972520 -0.811637876158827 0.189431036565864
AT1G66410_at 11.1211572962798 11.1550987713176 11.2615269093001 11.1206603861733 11.3294940233099 11.1545122293059 10.5930890993167 10.6515864803920 10.3784145081668 10.5569383077573 10.8746408126046 11.2017317012127 11.0013459358120 10.9740687448408 10.6984317130070 10.9218498726976 10.9256218530667 10.6209697441898 10.3585618104206 0.0844432895578926 0.0850694062793174 0.084360461960796 0.0924743503539903 0.088286461053063 0.0879631480279732 0.0858979717499771 0.0836742831570431 0.0936292986296072 0.0902455662073367 0.0880152437730267 0.0831972240946522 0.0851060335382598 0.083940359423104 0.086236922209283 0.0829780206617961 0.086305483254632 0.0847799509209394 0.0918839671414242 1 1 - 24778123 24779413 24778405.909 24777880 24779563 - gene protein_coding_gene FALSE TRUE AT1G66410.1 CAM4 (CALMODULIN 4); calcium ion binding encodes a calmodulin Identical to Calmodulin-1/4 (CaM-1/4) (CAM4) [Arabidopsis Thaliana] (GB:P25854;GB:Q03510;GB:Q9FJ05); similar to CAM1 (CALMODULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G37780.1); similar to Os05g0491100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055907.1); similar to Calmodulin (CaM) (GB:P17928); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.403671573463195 5.51208549332983 0.00047724759512182 1 7.00936865920136 21.715209360738 0.403671573463195 0.0405981862872153
AT3G01790_at 5.89027650727228 6.19608648246329 4.57712234242936 4.8059900521552 4.65248138663991 5.28964607407594 5.17763063037297 6.3469305151375 5.19398945993998 5.24064924613509 4.2157432572058 4.65742742327375 4.62969337038103 4.39104839418129 5.11085032950809 4.1665035933647 3.94854818020209 4.26716056528322 5.51582167347749 0.208165965841065 0.200846790254212 0.201589518793995 0.202182902305496 0.206306097687568 0.207056771921875 0.200538936301616 0.200538936301616 0.202828143304954 0.205699825582693 0.202081704870212 0.210340385897573 0.218784560769207 0.204891505047637 0.200538936301616 0.204566162246798 0.220835457762861 0.208589178108684 0.210418286841255 3 3|0 -|/ 284547 285547 284929.111 283696 285785 - gene protein_coding_gene FALSE TRUE AT3G01790.1|AT3G01790.2 ribosomal protein L13 family protein similar to EMB1473 (EMBRYO DEFECTIVE 1473), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G78630.1); similar to putative ribosomal protein I [Oryza sativa (japonica cultivar-group)] (GB:BAC99787.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, bacterial and organelle form; (InterPro:IPR005823) -0.982434653664464 -5.49632276427231 0.000486555619759941 1 6.99321675829462 10.2371165066646 -0.982434653664464 0.239737943586075
AT1G66880_at 9.97004027217549 9.8061730210248 10.7578303930751 10.5597179194147 9.59752142185642 9.18796766362394 8.66838804561019 8.36968701484633 8.81839419038382 6.702035763096 7.20726176636587 8.32455442980617 7.2371155237428 7.90722587011 6.49450369131906 8.03760905656491 7.92077883945334 7.87006114736905 6.66034876380315 0.218401553129057 0.216645287450590 0.217850848406851 0.218180480572713 0.21802674878682 0.214848826259651 0.217049092551223 0.2161660642817 0.221413319649542 0.240639126384414 0.219111021317818 0.215168134627203 0.219475489037983 0.224590775390951 0.22494514976731 0.215676469506501 0.219550793751977 0.227603916148389 0.244022270300955 1 1 + 24958517 24959067 24958775.636 24950591 24959274 + gene protein_coding_gene FALSE TRUE AT1G66880.1 serine/threonine protein kinase family protein similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38210.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os05g0550800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056244.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.526741572954373 5.49590986185305 0.000486802089157549 1 6.99279308221574 17.1239065671296 0.526741572954373 0.0983610823903236
AT2G14170_at 8.7854920341215 9.03447122058158 9.01916900770219 9.11583102038006 10.0605730997158 9.46290065431831 8.72505857368515 8.41609183524303 8.43485549623861 8.4791463388015 9.13065332350816 9.00573047690883 9.0059626074001 8.98818346978236 8.75105970547105 8.89623356874256 9.02608870705174 8.78744066414874 8.33628562685268 0.130297344050142 0.130711724844802 0.127549886138589 0.138219308999161 0.138330028351155 0.129768314980166 0.130457678824387 0.134131004695859 0.143889163064530 0.131471694947773 0.13341416007664 0.126283631902429 0.128484931313955 0.129639293498214 0.125874462807165 0.126983886660008 0.140823321078033 0.131047501405073 0.129928611321256 2 2 - 5984814 5986125 5985385.455 5984438 5988981 - gene protein_coding_gene FALSE TRUE AT2G14170.1|AT2G14170.2|AT2G14170.3 ALDH6B2 (Aldehyde dehydrogenase 6B2); 3-chloroallyl aldehyde dehydrogenase|ALDH6B2 (Aldehyde dehydrogenase 6B2) Arabidopsis thaliana methylmalonate-semialdehyde dehydrogenase Identical to Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (MM-ALDH) (Aldehyde dehydrogenase 6B2) (ALDH6B2) [Arabidopsis Thaliana] (GB:Q0WM29;GB:Q9SI43); similar to ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G24503.1); similar to ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE), 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79440.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_783603.2); similar to methylmalonate semi-aldehyde dehydrogenase [Oryza sativa] (GB:AAC03055.1); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABD28558.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086); contains InterPro domain Methylmalonate-semialdehyde dehydrogenase; (InterPro:IPR010061)|Identical to Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial precursor (EC 1.2.1.27) (MMSDH) (MM-ALDH) (Aldehyde dehydrogenase 6B2) (ALDH6B2) [Arabidopsis Thaliana] (GB:Q0WM29;GB:Q9SI43); similar to ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G24503.1); similar to methylmalonate semi-aldehyde dehydrogenase [Oryza sativa] (GB:AAC03055.1); similar to Os07g0188800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059082.1); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABD28558.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086); contains InterPro domain Methylmalonate-semialdehyde dehydrogenase; (InterPro:IPR010061) 0.603248303850191 5.49504125671884 0.000487321021049037 1 6.99190171638279 17.7602892070556 0.603248303850191 0.125271374595372
AT3G51820_at 10.5926774686976 10.4793544562281 10.1556480042158 10.0553906235924 10.3163927498714 10.1552523809326 11.1057716614365 11.1184910220713 10.7703225282706 11.0454400781227 10.7900362645255 10.8423992167553 10.6916654858219 10.6736018538281 10.9327759615898 10.5437519727159 10.5991215159927 10.5463461073852 10.7259569221205 0.089884045528173 0.0845857625513261 0.0882758579643911 0.0848807272558344 0.0878834733260543 0.0878659482466622 0.0871288787640574 0.0912739139660376 0.0983679517697543 0.0858681286425485 0.0848368910819643 0.0845857625513261 0.0845857625513261 0.0845857625513261 0.0878160290090307 0.086940097425184 0.0890533055060451 0.0939752559643324 0.0845857625513261 3 3|0 -|/ 19227280 19228561 19227901.571 19226980 19230034 - gene protein_coding_gene FALSE TRUE AT3G51820.1 ATG4/CHLG/G4 (CHLOROPHYLL SYNTHASE); chlorophyll synthetase Encodes a protein with chlorophyll synthase activity. This enzyme has been shown to perform the esterification of chlorophyllide (a and b), the last step of chlorophyll biosynthesis. Although it can use either geranylgeranyl pyrophosphate (GGPP) or phytyl pyrophosphate (PhyPP) as substrates, the esterification reaction was faster with GGPP than with PhyPP. similar to prenyltransferase [Arabidopsis thaliana] (TAIR:AT3G11945.1); similar to chlorophyll synthase [Avena sativa] (GB:CAB85464.1); similar to Os05g0349700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055272.1); contains InterPro domain Chlorophyll synthase, ChlG; (InterPro:IPR011799); contains InterPro domain Bacteriochlorophyll/chlorophyll synthetase; (InterPro:IPR006372); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) -0.399090128983252 -5.49363523205473 0.000488162303752465 1 6.99045857101278 21.2722233659631 -0.399090128983252 0.0383157439441930
AT2G26110_at 5.63726714673935 6.14716548250347 5.87201844399755 5.73742026668602 6.57510512253565 7.00235587375155 5.70244463414393 5.57807092092851 4.67886696550712 5.14323402491442 5.92944134201906 6.10424356364478 6.16299519102592 5.9481820260939 5.49610309384562 5.61768804413809 5.62527307288933 4.64180339625462 5.32734195241952 0.245747262476894 0.233875733908664 0.238812868210197 0.239027536368671 0.238480275145752 0.237538243228109 0.23650602660046 0.24353309972094 0.240970212041891 0.238722083778580 0.236663878003733 0.241393310400664 0.230763853373922 0.236159825768961 0.233309513389904 0.235240822534203 0.253196265199642 0.231543532073643 0.230763853373922 2 2 + 11128315 11128701 11128516.727 11127984 11129137 + gene protein_coding_gene FALSE TRUE AT2G26110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26130.1); similar to cDNA-5-encoded protein (GB:AAA50235.1) 0.585694891311221 5.49304419296505 0.000488516419777621 1 6.9898518253298 11.4017462516704 0.585694891311221 0.119410853927401
AT1G23740_at 10.7264511182789 11.0223445424613 11.1966727375945 11.1748546544602 10.9530086997811 10.8123393187762 12.2876299350641 12.4315777956954 11.8667579069508 12.2930597140086 11.8525601004142 11.7202794185193 11.9050476772949 11.8597767971214 11.6194926566608 12.1290213245724 11.6851791247336 11.6889662347888 12.1512826818099 0.0712052748177376 0.0694065335271486 0.0687798886150076 0.0698986832021812 0.0700551165391812 0.0739213129427069 0.0714008057876699 0.0681772914721723 0.0746929157237611 0.0688353000707726 0.0694590304204406 0.0681772914721723 0.0692048487530657 0.073333828672961 0.0681772914721723 0.0681772914721723 0.0794289037841318 0.0743138694407806 0.0687303082771182 1 1|0 -|/ 8398237 8398937 8398564.111 8398104 8399738 - gene protein_coding_gene FALSE TRUE AT1G23740.1 oxidoreductase, zinc-binding dehydrogenase family protein Identical to Quinone oxidoreductase-like protein At1g23740, chloroplast precursor (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9ZUC1;GB:Q945P3); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT4G13010.1); similar to Os08g0379400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061691.1); similar to quinone oxidoreductase-like protein [Helianthus annuus] (GB:AAK66565.1); contains InterPro domain Quinone oxidoreductase/zeta-crystallin; (InterPro:IPR002364); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.439470839690944 -5.48845576481299 0.0004912750890278 1 6.9851393982463 23.2812301091071 -0.439470839690944 0.0620438520663567
AT1G74730_at 10.5123848850724 10.4904991406076 9.90919806362088 9.82015592553167 10.1027207493286 9.9737655569434 11.1085288745283 11.2690070176328 11.5401109213484 11.4672855474041 11.8280538165898 11.830536845076 11.2168181001269 11.6321638532259 11.8799307780300 11.4418861712875 10.8880119764605 11.3525794269758 11.2340789090520 0.0765124215053673 0.0751435798171776 0.0755297352525693 0.0753418733354895 0.0711048790538769 0.0797275782114928 0.0718070664865922 0.0769143338255863 0.077156861829438 0.0711048790538769 0.071993275390639 0.0711048790538769 0.0734328387529463 0.0729188777113226 0.0724287006738235 0.0711048790538769 0.0771847104035257 0.0735272235627182 0.0717667297804069 1 1 + 28082699 28083387 28083174.091 28082518 28083648 + gene protein_coding_gene FALSE TRUE AT1G74730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08050.1); similar to Os12g0575000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067105.1); similar to Os01g0585300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043425.1); contains InterPro domain Protein of unknown function DUF1118; (InterPro:IPR009500) -0.399361205283713 -5.48427657436807 0.000493802508192245 1 6.98084408566024 21.8595689001114 -0.399361205283713 0.0390007641675984
AT3G45300_at 8.10787382358099 8.13531557075194 8.6556052577701 8.67898986213308 9.25116061008862 8.779142618755 8.03297552715287 7.61062987181519 6.55773744233936 6.70785277446454 6.62126448217245 6.2924414647665 7.00176316504026 6.64824418494846 5.87361781878041 7.38442636766863 8.01400725223324 7.02909856087209 6.57580209144844 0.217555429769907 0.218786304580669 0.221463675936744 0.222278331298946 0.220767066201852 0.227591868003694 0.221203635886995 0.230233094581803 0.231340366625256 0.218392490102382 0.221483712439401 0.223145227376540 0.234256150291294 0.235013067797313 0.217893299719953 0.221070654433766 0.227247210147873 0.218670876881646 0.230543274622176 3 0|3 /|- 16632654 16633532 16633237 16631188 16636033 - gene protein_coding_gene FALSE TRUE AT3G45300.1 IVD (ISOVALERYL-COA-DEHYDROGENASE) Encodes isovaleryl-coenzyme a dehydrogenase. Identical to Isovaleryl-CoA dehydrogenase, mitochondrial precursor (EC 1.3.99.10) (IVD) (IVD) [Arabidopsis Thaliana] (GB:Q9SWG0;GB:Q8W4G7;GB:Q9XFT2); similar to ACX4 (ACYL-COA OXIDASE 4), oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G51840.1); similar to isovaleryl-CoA dehydrogenase [Beta vulgaris] (GB:ABH85388.1); similar to Isovaleryl-CoA Dehydrogenase; auxin binding protein (ABP44) [Pisum sativum] (GB:CAB55554.1); similar to Acyl-CoA dehydrogenase [Medicago truncatula] (GB:ABE89542.1); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase, N-terminal; (InterPro:IPR006092); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase; (InterPro:IPR006089); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type 1; (InterPro:IPR006090); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.556918182418798 5.48256476526608 0.000494841838581189 1 6.9790838363842 15.1424143168282 0.556918182418798 0.109787701718143
AT4G30340_at 6.28479674780214 6.38369879903353 6.54084953229476 6.1399498156366 6.85478653081958 6.63122033086706 6.34304303664787 5.84164072453749 5.63352016620837 5.45686691875547 6.85291062961748 6.99530828236192 6.14178222829992 6.49770059479647 6.69702998830886 5.61129439821995 4.94031162831708 6.41891038833094 5.20596540032995 0.199986806870650 0.185630771200225 0.196947335577310 0.198389852621569 0.187988948338864 0.197832713840835 0.191860115373222 0.185630771200225 0.205825248250155 0.193907770822468 0.211753674187204 0.191269978487721 0.188616413125657 0.196602193574062 0.190212006434551 0.195088287124649 0.197671570219067 0.19712236151565 0.191616460398034 4 4 - 14839264 14839955 14839700.545 14838315 14841073 - gene protein_coding_gene FALSE TRUE AT4G30340.1 ATDGK7 (DIACYLGLYCEROL KINASE 7); diacylglycerol kinase encodes a diacylglycerol kinase. Applying a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings. similar to diacylglycerol kinase, putative [Arabidopsis thaliana] (TAIR:AT2G18730.1); similar to Diacylglycerol kinase accessory re (GB:ABE81286.1); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) 0.582847623791446 5.48092528476761 0.000495839491924117 1 6.97739748493124 12.2282599458946 0.582847623791446 0.118878392361012
AT4G05090_at 5.85509034089271 6.24507425234547 4.70613533933501 4.67286130517911 5.99347903832913 5.05099944324909 7.15017296170825 6.87227310748143 6.87622564899863 6.93689436911544 6.90904660272631 7.0328146298011 6.34949874462235 6.77432932118286 7.18840169647262 6.73181938452999 5.8670064124324 6.77337704107126 6.73361839300239 0.217523585197407 0.206035060240585 0.218916424656553 0.210735714738038 0.213093800759671 0.220694340049640 0.209734221623429 0.208385433577815 0.221420391879347 0.211088183519151 0.204633427104268 0.204633427104268 0.210407908663946 0.217331417483951 0.218995590335393 0.211650614682442 0.220473115705743 0.216918217287663 0.211385620488500 4 4|0 +|/ 2610665 2611590 2610981.8 2609140 2611760 + gene protein_coding_gene FALSE TRUE AT4G05090.1 inositol monophosphatase family protein Identical to Putative PAP-specific phosphatase, mitochondrial precursor (3'(2'),5'- bisphosphate nucleotidase) (EC 3.1.3.7) (3'(2'),5-bisphosphonucleoside 3'(2')-phosphohydrolase) (DPNPase) [Arabidopsis Thaliana] (GB:Q9M0Y6;GB:Q9S9S9); similar to SAL2, 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT5G64000.1); similar to Os07g0558300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059974.1); similar to Os07g0558200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059973.1); similar to putative 3(2),5-bisphosphate nucleotidase [Oryza sativa (japonica cultivar-group)] (GB:BAC84032.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) -0.785204979342254 -5.47966831910541 0.000496605864036765 1 6.97610426753477 12.5943604899702 -0.785204979342254 0.183036763295678
AT4G11980_at 5.99466421754536 6.0620903417132 5.11293576516536 5.10307755208437 5.60883312873522 5.73890516533306 6.03675728498245 6.51774503064919 5.32077227287945 6.03730831020151 5.2081600267875 5.6285360707669 5.40868523246526 5.84292642237907 5.63367710929013 5.49014656133451 5.12952145789358 5.3757373656027 5.7242695516423 0.201063352439314 0.198575268154604 0.195739520524719 0.199014146837999 0.200788255558083 0.199715778039570 0.197838322842307 0.195746829197924 0.193259139361980 0.1982975202091 0.196157206878803 0.192774730248982 0.199131955796984 0.195331744107295 0.198708937838561 0.192859195635900 0.200504379028630 0.200085765196528 0.198072508494719 4 4|0 -|/ 7183847 7184801 7184339 7183644 7185569 - gene protein_coding_gene FALSE TRUE AT4G11980.1 ATNUDT14 (Arabidopsis thaliana Nudix hydrolase homolog 14); hydrolase Identical to Nudix hydrolase 14, mitochondrial precursor (EC 3.6.1.-) (AtNUDT14) (NUDT14) [Arabidopsis Thaliana] (GB:Q9SZ63;GB:Q941C3); similar to ADP-sugar diphosphatase [Solanum tuberosum] (GB:CAJ55406.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.495659623326252 -5.47854397965262 0.000497292468795376 1 6.97494726862045 11.3512713069707 -0.495659623326252 0.0870297070760146
AT3G44990_at 7.73239489179304 8.1003274255159 4.45226269444286 4.55769239487273 7.39139354750374 7.04905342287484 10.1685150783945 10.282986702786 4.01082359595648 9.49954462077044 8.04574502660842 9.5666683111678 9.22192678691266 8.98246414501885 9.65941363040213 9.24430659976518 8.74189023451243 8.88997093362282 7.02714970782491 0.170406697743088 0.171058651943056 0.190634845679216 0.178374714029610 0.187084313842219 0.170697265454082 0.166508232631588 0.168774747232163 0.199129142468761 0.170302108491045 0.169497257537863 0.165155082683155 0.167978212397347 0.166938884578239 0.165155082683155 0.166835501779534 0.166234117925114 0.165155082683155 0.181351308396333 3 3 - 16458274 16458892 16458515 16457960 16459749 - gene protein_coding_gene FALSE TRUE AT3G44990.1 XTR8 (xyloglucan:xyloglucosyl transferase 8); hydrolase, acting on glycosyl bonds xyloglucan endo-transglycosylase Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 31 precursor (EC 2.4.1.207) (At-XTH31) (XTH-31) (AtXTR8) (XTH31) [Arabidopsis Thaliana] (GB:P93046;GB:Q9LXH6); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT2G36870.1); similar to xyloglucan endo-transglycosylase [Carica papaya] (GB:AAK51119.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.505123304690737 -5.47050146744302 0.000502234120801672 1 6.96666472865537 15.4117720281156 -0.505123304690737 0.0910455511495117
AT3G47070_at 12.0871551071501 12.3044013901515 11.9055871191105 11.9624334551076 11.9077792902713 11.7751827739669 13.0158803050187 12.9617483870470 12.9775247863292 12.9079388357591 12.8934322452628 12.8893333145735 12.4765322123722 12.7539320578451 12.7257914693750 12.9258608964879 12.5989977339471 13.0323028940457 12.8137496732779 0.0678595327618375 0.0653027475711621 0.0671706268504629 0.0697160067541906 0.0648395380416126 0.0679623088107976 0.0722155481887798 0.0679149792157439 0.0704803348874545 0.0650815232179316 0.0670708685316314 0.0641941440611446 0.0647674855561262 0.0681363640820809 0.0654524961630579 0.0641941440611446 0.0672691527022645 0.0649080945485605 0.0641941440611446 3 3 - 17348214 17348462 17348355.273 17348050 17348718 - gene protein_coding_gene FALSE TRUE AT3G47070.1 similar to thylakoid soluble phosphoprotein [Spinacia oleracea] (GB:CAD45559.1) -0.408632774930593 -5.46545481372258 0.000505362328198105 1 6.96146171096763 25.0834012875333 -0.408632774930593 0.0460922103371729
AT3G11780_at 9.61614980409705 9.86202256850296 10.1753740204244 10.3367466930895 10.4855036292608 10.3024087199376 9.68374107606639 9.93731143865081 9.82923171928066 9.76078444975558 10.5590971329040 9.98693567835018 10.2066755143996 10.2666407262281 10.0562818858561 10.2683710306872 9.60270313543434 10.3108158375375 9.74848319179137 0.103372534348437 0.104179127263164 0.103744743656116 0.101665932162570 0.102800389294066 0.104950503457833 0.107693617766337 0.107822399290013 0.117066440887328 0.108187018381986 0.103354757399753 0.10014793426077 0.104580363974860 0.104556500002797 0.100943865507223 0.100848082557630 0.115228571970476 0.101386300585577 0.106889138588986 3 3|0 -|/ 3724838 3725453 3725124.889 3724140 3725598 - gene protein_coding_gene FALSE TRUE AT3G11780.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein similar to MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06480.1); similar to Os03g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051500.1); similar to putative ML domain protein [Nicotiana glauca] (GB:CAH69231.1); similar to Os07g0159800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058934.1); contains InterPro domain E1 protein and Def2/Der2 allergen; (InterPro:IPR003172) 0.463946187290424 5.46499315773736 0.000505649548408394 1 6.96098552982833 20.0182521960623 0.463946187290424 0.07429594273689
AT1G77440_at 8.28979331946424 8.22637225797263 8.37566624001515 8.4944920041676 8.40878603352651 8.46361635022126 8.27506841051066 8.1778780145897 7.66856857684257 6.83435188217134 7.78955243684994 7.67738142881436 7.37561624921098 7.84762582568243 8.1408240302275 7.8493650062167 7.80739854648853 7.72620614464398 7.08700355500116 0.140726150982222 0.143482235580354 0.143299954734515 0.135727312668298 0.135327160313605 0.152619029114956 0.134866118498195 0.141747769461775 0.157008112347996 0.152826184275228 0.141747577927986 0.138568745470555 0.145045669004503 0.139556874246353 0.143461230826379 0.137975234901997 0.142959070781764 0.144777368319059 0.145844981700253 1 1|0 +|/ 29101361 29102743 29101869.5 29100914 29103344 + gene protein_coding_gene FALSE TRUE AT1G77440.1|AT1G77440.2 PBC2 (20S proteasome beta subunit C 2); peptidase Encodes beta subunit of 20s proteosome complex which is involved in protein degradation. Identical to Proteasome subunit beta type 3-B (EC 3.4.25.1) (20S proteasome beta subunit C-2) (PBC2) [Arabidopsis Thaliana] (GB:O81153;GB:Q9CAR1;GB:Q9SRH0); similar to PBC1 (20S proteasome beta subunit C1), peptidase [Arabidopsis thaliana] (TAIR:AT1G21720.1); similar to 20S proteasome, A and B subunits [Medicago truncatula] (GB:ABE79860.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.386733513430050 5.46126384761329 0.000507976285183937 1 6.95713752298733 15.8256528520694 0.386733513430050 0.0302692988750831
AT2G26250_at 9.51847610187879 9.59983486985034 9.85055643382703 9.92013166998668 10.6801206222304 10.5165378078043 10.3627528410401 10.2627797913102 10.8440847100331 10.5986644196293 11.5556001296835 11.3519202386601 11.3537230462932 11.1787142408047 11.2659714205959 10.8605702563254 10.7311539390800 11.1871750335962 10.6566764514449 0.0989768575908924 0.101757429748133 0.103582097450764 0.0986697799915993 0.0955475503592185 0.104406859726898 0.0986557990068193 0.099285297826511 0.104299599399840 0.0956703138479603 0.0941040064141068 0.0941040064141068 0.0965428172900423 0.0974319547430632 0.0968613147874526 0.0941040064141068 0.100228432024280 0.0980857252263175 0.0985064356336135 2 2 - 11177890 11178379 11178136.455 11177496 11180220 - gene protein_coding_gene FALSE TRUE AT2G26250.1 FDH (FIDDLEHEAD); acyltransferase epidermis-specific, encodes a putative beta-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. Identical to 3-ketoacyl-CoA synthase 10 (EC 2.3.1.-) (KCS-10) (Very-long-chain fatty acid condensing enzyme 10) (VLCFA condensing enzyme 10) (Protein FIDDLEHEAD) (FDH) [Arabidopsis Thaliana] (GB:Q9LLE8); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to fiddlehead-like protein [Gossypium hirsutum] (GB:AAL67993.1); similar to fiddlehead-like protein [Tropaeolum majus] (GB:AAO47729.1); similar to putative beta-ketoacyl-CoA synthase [Antirrhinum majus] (GB:CAC84082.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.395835371768204 5.45478908145871 0.000512043710728739 1 6.95045092293658 21.0316047998238 0.395835371768204 0.0379987654094444
AT4G34670_at 10.3781500798317 10.4500771763119 9.5796689831922 9.83085387182657 9.994921476018 10.1060961391571 9.97147243064056 10.2725535442419 10.0518030598855 10.6307595833787 10.0745999505161 10.2848688558073 9.96031707950423 9.74422184124566 10.2519774445586 9.78516801746716 9.7521940954953 9.62522341064143 10.6924226158338 0.086477404306658 0.08916971878015 0.089862711917177 0.0941538565859734 0.0868464880430515 0.0918008816922102 0.0903235579192086 0.0910022216055989 0.108557252638016 0.086477404306658 0.0940335876922264 0.086477404306658 0.0896350026843206 0.0952657430547525 0.0909624102550488 0.0874198083629643 0.0916942513566958 0.0903242102563206 0.0887642973165166 4 4 + 16549460 16549990 16549781.545 16548623 16550458 + gene protein_coding_gene FALSE TRUE AT4G34670.1 40S ribosomal protein S3A (RPS3aB) Identical to 40S ribosomal protein S3a-2 (RPS3AB) [Arabidopsis Thaliana] (GB:Q42262;GB:O82816;GB:Q42293); similar to 40S ribosomal protein S3A (RPS3aA) [Arabidopsis thaliana] (TAIR:AT3G04840.1); similar to 40S ribosomal protein S3a (S phase-specific protein BIS289) (GB:P49396); contains InterPro domain Ribosomal protein S3Ae; (InterPro:IPR001593) -0.456842636501441 -5.45211997717229 0.000513730760004621 1 6.94769236733135 20.2695490909544 -0.456842636501441 0.0716197547353254
AT2G40230_at 4.92870832563225 5.57279625490433 4.54551423989859 4.50542954909906 6.3900886072619 6.82021899000528 5.36390549274728 6.02989796772964 5.0989687086629 4.64618546327694 6.85981349543062 6.8543174940996 5.91197724483425 6.79475931266936 6.22597342434684 5.70797898108724 5.13782778148431 5.51079161795688 4.34480802049153 0.242574101041136 0.242574101041136 0.252988205175981 0.252391582508964 0.245505692496172 0.257193711563102 0.256725702432822 0.242574101041136 0.247675039587113 0.243807805979701 0.242574101041136 0.243733676071278 0.248404709391014 0.245839105057131 0.247648486069429 0.242574101041136 0.255570895950366 0.249859417805065 0.243930018651968 2 2 - 16810411 16810861 16810674.636 16810170 16811819 - gene protein_coding_gene FALSE TRUE AT2G40230.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT1G27620.1); similar to Os01g0382200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043090.1); similar to Os01g0104900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041768.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD68809.1); contains InterPro domain Transferase; (InterPro:IPR003480); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964) 0.760130845578839 5.44586061272038 0.000517710914011963 1 6.94121835677063 10.930611919976 0.760130845578839 0.176906747066736
AT3G16760_at 5.72721969563629 6.15405140061066 6.16824848283108 6.40451973941177 6.79171204858017 6.20670432411384 6.44160745073383 6.13410796264759 5.53482487899637 6.20953647562582 6.52265295849898 6.92644457276897 6.67997249871667 6.71629488705422 6.68545329123658 6.7660193032755 7.21947033365275 6.80504942853244 5.56937096189912 0.202822341962924 0.198904046768434 0.206628072027057 0.207293624016819 0.207977745877928 0.209077689518699 0.200534739185448 0.196333939652581 0.212421728034186 0.194591595235151 0.209966141397795 0.194104741549976 0.20173354659376 0.212380876237861 0.205516083164520 0.199432507102674 0.206175745263067 0.197123131400159 0.197387063299024 3 3 + 5703822 5704398 5704152.636 5703019 5705319 + gene protein_coding_gene FALSE TRUE AT3G16760.1|AT3G16760.2 tetratricopeptide repeat (TPR)-containing protein similar to chloroplast outer membrane translocon subunit, putative [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to Os03g0340700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050066.1); similar to unnamed protein product [Candida glabrata] (GB:XP_447784.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28780.1); similar to Os03g0340700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050066.1); similar to unnamed protein product [Candida glabrata] (GB:XP_447784.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.648737537518517 5.44362754576617 0.000519138986616449 1 6.93890705958973 12.5342282704327 0.648737537518517 0.142157784578397
AT4G24960_at 5.63121909665976 6.24523213564457 6.17250736378743 6.03982265925242 6.40949797668963 5.73412491695846 7.09082662940336 7.0432068310175 4.65809103804527 5.06060807098976 6.71009043761628 7.0881859126059 6.52322969844926 6.49618095442487 6.72696176306892 8.28715375752649 6.05168853503328 5.92475656689828 4.99366070138616 0.26872646811898 0.263995995163795 0.269280425553667 0.267598307707951 0.266009338039114 0.275045786317829 0.268714936071678 0.262441950302189 0.283782237273133 0.272834752809019 0.260875191102538 0.261852213843571 0.27657451717717 0.269374820241425 0.267018557046339 0.270472936081182 0.285440760169476 0.266603175576954 0.28278063206726 4 4|0 +|/ 12828075 12828614 12828441.444 12827947 12829253 + gene protein_coding_gene FALSE TRUE AT4G24960.1 ATHVA22D (Arabidopsis thaliana HVA22 homologue D) Homologous to a eukaryote specific ABA- and stress-inducible gene first isolated from barley. Groups in one subfamily with ATHVA22E. Identical to HVA22-like protein d (AtHVA22d) (HVA22D) [Arabidopsis Thaliana] (GB:Q9S760;GB:Q9SW30); similar to ATHVA22E (Arabidopsis thaliana HVA22 homologue E) [Arabidopsis thaliana] (TAIR:AT5G50720.1); similar to Protein HVA22 (GB:Q07764); similar to Os11g0498600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067939.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) 0.704139036193268 5.44160995302508 0.000520432955329983 1 6.93681803706103 12.1108801461816 0.704139036193268 0.159831104424060
AT4G23270_at 8.78853588618001 9.2302290021315 9.31332528720732 9.28216443496515 9.77477359904938 9.02285647355688 8.3448338924883 8.20822877098832 7.52179181153303 7.68347161842177 8.91326275544678 8.62166499664901 8.28864252111852 8.35103632228213 7.55794328460253 8.60080656107886 8.41200247463426 8.10786286360644 7.88962258602256 0.221215185209184 0.221215185209184 0.234495453370218 0.221215185209184 0.228462114471926 0.231790147824061 0.226690910626574 0.228726965835279 0.232113121771988 0.246236463243631 0.223832054568278 0.221215185209184 0.239857920213835 0.237973702790425 0.227472533385206 0.222519264198184 0.234401986853453 0.23306595881372 0.238683971853718 4 0|4 /|+ 12173033 12173756 12173475.778 12171113 12173935 + gene protein_coding_gene FALSE TRUE AT4G23270.1 protein kinase family protein similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23310.1); similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23280.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.681840222257921 5.44093937561542 0.000520863803748653 1 6.93612356159448 17.0230924488641 0.681840222257921 0.152847942358283
AT1G31230_at 9.63134705712203 9.69496693612625 8.4053974153471 8.13726110162826 8.880990092864 8.90854665746719 9.72871020731964 9.66851796825048 8.3447886793251 9.64131090302671 9.2942442796343 9.55316278203982 9.07939930529791 9.51575921696401 8.97718276857353 8.82391467325134 9.11053312298015 9.41958845647626 8.85540905831794 0.122037532936499 0.116112672924222 0.124016639104796 0.133948746426369 0.116215813768414 0.123877882364938 0.116918470291929 0.115336204075881 0.130569119146130 0.118143035470528 0.117538936909248 0.116034296444569 0.114737978460829 0.117623797630644 0.115345069517381 0.115955669152154 0.121364111484476 0.120511556101206 0.127807311123770 1 1 - 11158766 11159502 11159105.364 11158599 11163255 - gene protein_coding_gene FALSE TRUE AT1G31230.1 AK-HSDH I (ASPARTATE KINASE-HOMOSERINE DEHYDROGENASE I); aspartate kinase/ homoserine dehydrogenase Encodes a bifunctional aspartate kinase/homoserine dehydrogenase. These two activities catalyze the first and the third steps toward the synthesis of the essential amino acids threonine, isoleucine and methionine. Identical to Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplast precursor (AK-HD 1) (AK-HSDH 1) (Beta-aspartyl phosphate homoserine 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (AKHSDH1) [Arabidopsis Thaliana] (GB:Q9SA18;GB:Q8GWK9;GB:Q9SHF9;GB:Q9SW59); similar to AK-HSDH/AK-HSDH II [Arabidopsis thaliana] (TAIR:AT4G19710.2); similar to Aminoacyl-tRNA synthetase, class I; Bifunctional aspartokinase/homoserine dehydrogenase I [Medicago truncatula] (GB:ABE90460.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05981.1); similar to aspartokinase-homoserine dehydrogenase [Glycine max] (GB:AAC05983.1); contains InterPro domain Aspartate kinase region; (InterPro:IPR001341); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Bifunctional aspartokinase/homoserine dehydrogenase I; (InterPro:IPR011147); contains InterPro domain Homoserine dehydrogenase, NAD-binding; (InterPro:IPR005106); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain Homoserine dehydrogenase; (InterPro:IPR001342) -0.411641598307857 -5.44092581124525 0.000520872522918039 1 6.9361095130071 18.2164134907867 -0.411641598307857 0.0490471971574156
AT3G16010_at 6.14702728441127 6.73277610782121 5.81815527440656 6.19232029459299 5.70490070336514 6.28208451281706 6.95019215426199 7.34680131955822 7.41952089014669 7.3779936349979 6.70753637645679 7.20128530676825 6.69127330656567 6.57261204077342 6.78181973183309 7.17185813047722 6.38995691925116 6.33146981271351 7.44566417925298 0.193800707705869 0.183408859346622 0.190004376874464 0.185010790165927 0.190462071688976 0.204173596547809 0.182745646395091 0.184978157170343 0.212746460715741 0.18124510252574 0.185404471874334 0.185509464037541 0.190481942381391 0.193916237867898 0.184229207153302 0.181409204623247 0.199374725981388 0.201114613530842 0.180847359151370 3 3 + 5435661 5436200 5435937.273 5434020 5436270 + gene protein_coding_gene FALSE TRUE AT3G16010.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to putative membrane-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58263.1); similar to Os07g0249100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059290.1); similar to Os02g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046504.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.739125234289352 -5.43958542202818 0.000521734909777690 1 6.93472111656251 13.4694668836897 -0.739125234289352 0.170749900507825
AT4G05390_at 4.35970060110939 4.52789218150462 5.42107505516821 5.43738076680043 5.05834737687012 5.26721808218015 5.77785243308612 5.56813218001131 4.23684629569992 5.01543883514937 5.3571634228031 5.46710112643147 5.01000402178938 5.21873352469486 5.27576044845708 5.37665937020712 5.73016580375727 5.55155561520088 5.00446160604723 0.20206873909584 0.198099964490442 0.192303978975202 0.188701616124819 0.188729830411604 0.190124036302420 0.188798139341936 0.196085382860478 0.194887414521010 0.190569871936357 0.192924549519468 0.190151693469653 0.193344713367325 0.205375225334375 0.189779943142841 0.189262822578084 0.201476411206404 0.193359285815774 0.194890638944917 4 4 - 2738926 2739437 2739169.727 2738712 2740652 - gene protein_coding_gene FALSE TRUE AT4G05390.1 ATRFNR1 (ROOT FNR 1); oxidoreductase Encodes a root-type ferredoxin:NADP(H) oxidoreductase. similar to ATRFNR2 (ROOT FNR 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G30510.1); similar to ferredoxin-NADP reductase (EC 1.18.1.2) - garden pea (fragment) (GB:T06773); similar to Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (FNR) (GB:Q41014); contains InterPro domain Ferredoxin--NADP reductase; (InterPro:IPR012146); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.429377487847839 5.43776285716901 0.000522910020135408 1 6.93283277180138 10.2400207490745 0.429377487847839 0.058981904013204
AT1G70070_at 7.54585169496007 7.79996371593604 7.37327813448957 7.18804668682829 7.32654734395917 7.28104120254883 7.18051412155652 7.46942656527687 7.63629078139467 7.76247179467533 7.06957111077954 7.12785440537807 6.8672830693932 6.83667723446026 7.20555050648081 6.87073618367547 6.51101860048716 7.04125649934844 7.57316407487475 0.176242681240289 0.175249949483840 0.18445293921753 0.178526995061175 0.168817191393584 0.177294497763011 0.171680194948475 0.179767187181268 0.180408032537884 0.171501229306462 0.179497837182927 0.179121638904623 0.173765381985328 0.185315388837491 0.179605221606515 0.170587352316979 0.184425623336809 0.18223307046853 0.167065546123964 1 1 - 26393688 26394180 26393889.273 26393679 26397859 - gene protein_coding_gene FALSE TRUE AT1G70070.1 PDE317 (PIGMENT DEFECTIVE 317); ATP-dependent helicase similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G46960.1); similar to Os02g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048065.1); similar to DNA polymerase theta/eta, DEAD-box superfamily (ISS) [Ostreococcus tauri] (GB:CAL55965.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.461388057436896 -5.43427615957838 0.0005251661405448 1 6.9292186165266 14.6948598506437 -0.461388057436896 0.0743178246738234
AT2G27960_at 8.15588342051653 8.2741570357592 8.04404302273302 7.91979432179928 8.87747508374825 8.36707657411145 7.84723256535608 8.0787327505209 6.79867391492 7.52192955293204 8.20320835014651 8.25174251080288 8.2929176397238 8.35085122845148 8.28367935304306 8.35053930978905 7.92386834729721 8.1047891786828 7.80564575713017 0.119586181838357 0.121376284795170 0.128445218426591 0.120119416916428 0.126804555388127 0.124123618533621 0.127586133746903 0.119073915576303 0.146370183206978 0.124532861264020 0.13436866033848 0.120766532084077 0.123038355988899 0.128063632637255 0.128488690595200 0.118997173639514 0.124031793788984 0.118997173639514 0.128312874117622 2 2|0 -|/ 11918031 11918593 11918283.7 11917800 11918762 - gene protein_coding_gene FALSE TRUE AT2G27960.1 CKS1 (CDK-SUBUNIT 1); cyclin-dependent protein kinase catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycle similar to CKS2 (CDK-SUBUNIT 2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G27970.1); similar to cyclin-dependent kinases regulatory subunit [Glycine max] (GB:AAS13367.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) 0.528939444487258 5.43318659803932 0.000525873332731958 1 6.92808879025494 15.9933572958528 0.528939444487258 0.101429132489485
AT3G07400_at 6.07688087488186 6.0529696954215 5.31916862698646 4.9599116972565 5.5350017985485 5.39348077541793 5.88174320558458 5.78263335117408 5.8009682693362 5.86150033746769 6.21570735499944 6.00602066286273 5.78219686080579 5.77330919537048 5.3259717851366 5.89951575444903 4.8756765307386 5.28665979342549 6.03285075010866 0.200585987340230 0.208709096322787 0.204922261453013 0.203685895905000 0.201841108009072 0.213665948883423 0.205191168245416 0.204935502529458 0.243460036532836 0.207709783531229 0.197178888052826 0.202078238790073 0.207111205174838 0.213244594216629 0.205648039649736 0.199322406979397 0.225184264409432 0.215029580988916 0.205555598111638 3 3 + 2371572 2372207 2371912.818 2367308 2372451 + gene protein_coding_gene FALSE TRUE AT3G07400.1 lipase class 3 family protein similar to lipase class 3-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22465.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.449736800313575 -5.43275977401736 0.000526150650670828 1 6.92764613643573 11.3972597670894 -0.449736800313575 0.0691110758062038
AT1G55330_at 9.79054364717688 9.8766288459552 7.82173744644834 7.9840252691741 9.1858551784865 9.05517720996177 10.0060772539470 10.1022789738147 11.3971804471333 10.5480239549471 12.723196121405 11.9544215841148 11.6641213257733 11.9584639893832 12.2309844819955 11.1970494990799 10.0779381962111 11.6404162839047 11.2036570040591 0.119738332448007 0.118539591669177 0.156408690492940 0.129735809849774 0.120812299708463 0.126060312551546 0.119398470931763 0.115530420924915 0.119764296942067 0.119696548497817 0.122487003552156 0.120610101286454 0.117937753080392 0.116920561640026 0.121221554120971 0.120405745453965 0.121432895788244 0.119587952612779 0.119342695306341 1 1 - 20652300 20652435 20652355.182 20652131 20652557 - gene protein_coding_gene FALSE TRUE AT1G55330.1 AGP21 (ARABINOGALACTAN PROTEIN 21) Encodes a putative arabinogalactan-protein (AGP21). Identical to Arabinogalactan peptide 21 precursor (AG-peptide 21) (AGP21) [Arabidopsis Thaliana] (GB:Q9C8A4); similar to AGP12 (ARABINOGALACTAN PROTEIN 12) [Arabidopsis thaliana] (TAIR:AT3G13520.1); similar to unknown [Brassica rapa] (GB:ABB97032.1) -0.400489968842769 -5.43233298169168 0.000526428107462713 1 6.92720348367143 20.5930126800939 -0.400489968842769 0.0424176366128793
AT1G66840_at 4.78777506735419 4.96075007565701 5.03931776988556 5.3313427836419 5.79174656480365 5.52939184774587 7.41297672456898 6.79688484875156 6.27850290792833 6.89008330171302 5.45890535551529 5.88547282221357 6.44137481548914 6.06420614185352 5.21979909334152 6.43795377187786 6.65219531115807 5.41463936681355 6.63264552715652 0.208352416168391 0.205291007645192 0.20891483763559 0.198344872456348 0.201071045612552 0.203297323462500 0.217696254256547 0.211392271061730 0.211128165043193 0.203950519673959 0.207057625495539 0.2142646491799 0.201371416463206 0.201134898017195 0.204580208869242 0.205620656260331 0.201485076661602 0.201237138883838 0.204016697298693 1 1 - 24937750 24938212 24937921.455 24937661 24939779 - gene protein_coding_gene FALSE TRUE AT1G66840.1 similar to PMI15 (plastid movement impaired 15) [Arabidopsis thaliana] (TAIR:AT5G38150.1); similar to Os01g0692300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043941.1); similar to myosin heavy chain-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82493.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) -0.61011959085675 -5.43184089795164 0.000526748208088239 1 6.92669307364542 11.9798876671588 -0.61011959085675 0.129917630459585
AT1G09340_at 11.8744278714286 11.8513695344482 11.3658701896472 11.3282870110822 11.5637164311766 11.2331798049438 12.7927542226898 12.5539532269435 12.5864577879890 12.7825015993442 12.8004530485630 12.9861189410155 12.4282357381996 12.624563923371 12.8699683539547 12.9011460185206 12.2552817500382 12.6768404316414 12.7455057635606 0.078916732754478 0.0753282781895182 0.0777391107889994 0.0776761383372253 0.079124354148713 0.0820419291114035 0.0774958717669137 0.0802970388357244 0.0801316742574889 0.0814975683589572 0.0778656150711262 0.07636849856044 0.076441213260296 0.0775414269421256 0.0783597078783356 0.0768910894771481 0.078272322256644 0.082214520736653 0.0785138098512804 1 1|0 +|/ 3017127 3017985 3017539.7 3015330 3018236 + gene protein_coding_gene FALSE TRUE AT1G09340.1 catalytic/ coenzyme binding similar to mRNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G63140.1); similar to 38 kDa ribosome-associated protein precursor [Chlamydomonas reinhardtii] (GB:AAO22242.1); similar to Os12g0420200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066657.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.453679272983337 -5.43123179655173 0.000527144722698704 1 6.92606122938073 24.5192686578588 -0.453679272983337 0.0709786945230823
AT1G22180_at 7.3287993883544 7.1941361919818 6.80752927933246 6.57957302959662 6.91610015890979 6.21596151368919 4.75064730782826 4.43524599170103 4.25894165462606 4.31505253807165 4.8346334071496 5.35406061624139 5.24577340796262 6.03490978988418 4.56630873515449 4.72422921888887 5.0847068255234 4.2999812036941 4.7357877894588 0.204495050773589 0.207021274343220 0.208404529959305 0.210686861056394 0.201864012084978 0.208316710821562 0.20879379831705 0.201563616791071 0.209906912916005 0.205450350390157 0.201985888135912 0.204615331157323 0.202976483891842 0.204553280115514 0.203372370091522 0.203163645752154 0.204557343404628 0.211343175737332 0.204565667864828 1 1 - 7828441 7828979 7828758.273 7828315 7830381 - gene protein_coding_gene FALSE TRUE AT1G22180.1|AT1G22180.2|AT1G22180.3 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G08690.1); similar to Os02g0752000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048139.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE91555.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251)|similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G08690.1); similar to Os02g0752000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048139.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE91555.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.642032590962899 5.42848556951438 0.000528936515539205 1 6.92321165774955 11.0058338049814 0.642032590962899 0.140565810890549
AT2G23290_at 4.31536575623247 4.11351759873544 4.52206793734990 4.38507301863909 4.70620973014277 4.72634117617062 4.78309943528832 4.84891024662719 6.86326618880743 5.40672523061064 5.62969923165202 5.24267081012143 5.35500771652409 5.43143367600756 4.87635509142603 4.33139948045624 5.03339041150782 5.44032446702481 5.85572993280003 0.232070423838414 0.228829206026707 0.238739056261258 0.225759119695561 0.224712463056655 0.228023478727822 0.231688264432771 0.224750278360638 0.231933901760232 0.224437796189648 0.237416233283065 0.227440692649410 0.222654353728955 0.236418905449123 0.23584634553895 0.226743485007387 0.233993998741442 0.224256737907176 0.228046612908371 2 2 - 9912039 9912512 9912319 9911867 9913000 - gene protein_coding_gene FALSE TRUE AT2G23290.1 AtMYB70 (myb domain protein 70); DNA binding / transcription factor Member of the R2R3 factor gene family. similar to AtMYB73/MYB73 (myb domain protein 73), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G37260.1); similar to MYB6 [Malus x domestica] (GB:AAZ20429.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.402336150230650 -5.42777976432901 0.000529398094416357 1 6.92247907921244 10.1547942263962 -0.402336150230650 0.0438640234704571
AT3G09900_at 8.57251654168761 8.93923202044025 8.80132465331491 9.12182481980399 9.57305923717613 9.25456329106189 8.3610059933514 8.59862445237246 7.9079984264504 7.8899468905162 8.35129364422687 8.6359538370296 8.5974638019482 8.42970097541258 8.11937104366391 8.7484173371129 8.59803147647864 8.6735463213244 8.18267103681599 0.164906334250931 0.163574448432668 0.156927971996105 0.163190610443956 0.173827692952562 0.169597795093675 0.168334317339911 0.162950421912882 0.185798592806033 0.165565078601535 0.169265273384093 0.162108738094435 0.161041089335977 0.172532047131139 0.170650004791956 0.158984962792148 0.176005276071739 0.162688595502328 0.166821426032682 3 3|0 +|/ 3035175 3036357 3035723.5 3034562 3036598 + gene protein_coding_gene FALSE TRUE AT3G09900.1 AtRABE1e/AtRab8E (Arabidopsis Rab GTPase homolog E1e); GTP binding similar to AtRABE1d/AtRab8C, GTP binding [Arabidopsis thaliana] (TAIR:AT5G03520.1); similar to ras-related protein RAB8-3 [Nicotiana tabacum] (GB:BAB84324.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.547765884215877 5.4201577446598 0.000534410779472591 1 6.91456238570802 17.159149420773 0.547765884215877 0.108777321599123
AT1G03740_at 8.27300166232988 8.52183564630337 8.53123164145901 8.60693856332398 9.36156766792543 8.2855094780957 6.89336518903864 6.29788602924453 7.12517894653432 6.08836240574051 6.73018050605315 6.56087071893262 6.72891644702466 7.23652546757214 6.51730535489497 7.37387826716813 6.78110800060085 7.0781949157135 5.66154289807006 0.255803391693075 0.254954236668243 0.262675976375999 0.251397212535542 0.253925108215761 0.266256054497161 0.252035951631345 0.252419753304722 0.252222920806949 0.258931395451630 0.246946221283515 0.254079116458929 0.246946221283515 0.254840114061029 0.260849982459773 0.246946221283515 0.249894220380240 0.250901426533534 0.262769221885330 1 1|0 +|/ 935296 935907 935599.1 933512 937042 + gene protein_coding_gene FALSE TRUE AT1G03740.1|AT1G03740.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G44290.4); similar to Protein kinase [Medicago truncatula] (GB:ABE89394.1); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.89198370780098 5.41695519109344 0.000536532384595022 1 6.91123298795658 14.6802005896450 0.89198370780098 0.217536427106078
AT1G18460_at 7.83581055418987 8.0158678108263 7.11794726975932 7.5659876144304 7.92313352673564 7.69075534960233 9.11353191917752 8.94894419291265 8.45595139708665 8.53263860282666 8.51543920289465 8.63342037037754 8.47576787504987 8.53987724520997 8.62212412387926 8.32165252380717 8.02477275081829 8.32475634792842 8.68737700932694 0.1494619786035 0.149954487145509 0.184408670048740 0.159067650964792 0.156589331369909 0.151658958217864 0.152968610151477 0.155146292449763 0.174364167278617 0.151505898375866 0.149690430275482 0.154544351557105 0.144911561713887 0.1577951102013 0.158609145957818 0.148979821511086 0.156439223989851 0.159517663572796 0.146242189358519 1 1 + 6355368 6355874 6355598.455 6352463 6356106 + gene protein_coding_gene FALSE TRUE AT1G18460.1 lipase family protein similar to lipase family protein [Arabidopsis thaliana] (TAIR:AT1G73920.1); similar to Esterase/lipase/thioesterase; AB-hydrolase associated lipase re (GB:ABE91610.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain AB-hydrolase associated lipase region; (InterPro:IPR006693) -0.515256021947885 -5.41321450831105 0.000539022119495241 1 6.90734187550875 16.5219382670754 -0.515256021947885 0.0970109165369804
AT3G60640_at 6.31754271148387 6.656921758564 7.23469580724819 7.44830027953761 7.9529957135516 7.38840371223452 6.29182454208592 5.36877970216852 5.07316849004155 5.76636252976486 6.0984408408924 5.53560243996948 5.89306609887328 5.93456270640457 5.34439974138802 6.31554750641731 6.98306126708923 5.52246721308454 6.0768440114558 0.259056321575942 0.241773508147315 0.256658381190027 0.249464006641201 0.246460867521493 0.246888518242602 0.246196824740214 0.241773508147315 0.256490274874884 0.244469808741919 0.241773508147315 0.249418805928443 0.255054848041610 0.250465440307005 0.245124971958671 0.241773508147315 0.245910950698104 0.261895893181185 0.241773508147315 3 3|0 +|/ 22427099 22427920 22427644.625 22426816 22428133 + gene protein_coding_gene FALSE TRUE AT3G60640.1 ATG8G (AUTOPHAGY 8G); microtubule binding similar to ATG8F (AUTOPHAGY 8F), microtubule binding [Arabidopsis thaliana] (TAIR:AT4G16520.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein [Cicer arietinum] (GB:CAD33929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.830966749622428 5.41262904370894 0.0005394129334347 1 6.90673264515903 12.6285256052854 0.830966749622428 0.199694952881439
AT4G02540_at 6.16123362346796 6.12642459541189 6.26887536081943 6.1264524364171 6.79879631090018 6.19342281182743 5.608680317781 5.14719861638507 5.55275965528598 5.7626201021797 7.42878672629619 7.2499215361794 7.13948636174688 6.32593097233462 6.24509977936014 6.80752634401226 6.04582556392535 6.51978477365895 6.88129083159642 0.248816682902471 0.239408977503652 0.246490875975423 0.248940372704479 0.247802359105376 0.250692044001396 0.256409811460865 0.241712349026639 0.245237933546687 0.239610330484528 0.245646233310104 0.239194705801335 0.242103705158182 0.261525536025178 0.244685423147240 0.243173888918823 0.249104264774780 0.253711436888103 0.239918537807925 4 4 + 1119131 1119626 1119433.273 1117154 1119817 + gene protein_coding_gene FALSE TRUE AT4G02540.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62030.1); similar to MEE53 (maternal effect embryo arrest 53), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G10560.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.620370417949037 5.41010002262981 0.00054110467826163 1 6.90410027436162 12.4468115692312 0.620370417949037 0.134152349526170
AT3G01310_at 10.3302704014486 10.2947281506736 10.2476799219643 10.1983228810707 10.7332318404817 10.5396946998773 9.79657857606564 9.71989116275442 9.72872967135065 9.68696306860586 10.3092544960210 10.1295732935016 10.0848409313784 10.0115469095747 9.87504159289787 9.97481986511128 10.0877912928612 10.1305072317292 9.64362989963113 0.102038825403713 0.101167833392815 0.108606082156372 0.105486106146012 0.0996422241489431 0.100913492976195 0.105814343446593 0.100974648007512 0.113478542746455 0.102342097055899 0.103088741505195 0.100940353117843 0.100120650128687 0.117158834924647 0.105123977587426 0.100045146078344 0.103826533223637 0.102526118155398 0.100926640334107 3 3 - 94377 95115 94749.364 94184 101999 - gene protein_coding_gene FALSE TRUE AT3G01310.1|AT3G01310.2 acid phosphatase similar to acid phosphatase [Arabidopsis thaliana] (TAIR:AT5G15070.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53244.1); similar to PREDICTED: similar to KIAA0377 splice [Gallus gallus] (GB:XP_413955.2); similar to LOC495012 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98273.1); contains InterPro domain Histidine acid phosphatase; (InterPro:IPR000560) 0.391673167442391 5.40605527570172 0.000543822376456953 1 6.89988790961707 20.1134811200405 0.391673167442391 0.0375321029996216
AT1G50710_at 5.45818649607395 4.9159863488972 3.87720747034262 4.17645940071811 4.86195694832614 4.63822658038482 5.41121072642795 5.34443558763408 5.08007267283872 5.39119952829859 5.17868264863467 5.2567071332284 5.0287510763259 5.22500598653492 5.35863416985604 4.46134003473189 4.10390569820345 4.64422200597032 4.93975782010157 0.257030580563068 0.268603012047187 0.269388840018116 0.283137052114558 0.257030580563068 0.266947851617191 0.257030580563068 0.257030580563068 0.266113348753798 0.260271949825891 0.274621071893051 0.257030580563068 0.262967311211102 0.270087395816995 0.266157292703474 0.257268999352728 0.285067925179050 0.274064740706256 0.257030580563068 1 1 - 18788412 18789464 18788832.833 18788177 18791470 - gene protein_coding_gene FALSE TRUE AT1G50710.1 similar to hypothetical protein MtrDRAFT_AC142394g9v2 [Medicago truncatula] (GB:ABE91638.1) -0.56192305135465 -5.40066582238178 0.000547466741080026 1 6.89427066085072 9.85754174548327 -0.56192305135465 0.114536424252361
AT1G08360_at 11.0337478491283 11.1380208043604 10.5265434073474 10.5552055774672 10.8525412937078 10.6635662120616 11.0514985473323 10.9400096963184 10.6203682298483 10.7527057672027 10.3845203268814 10.5604050842720 10.2799688967435 10.3136666375471 10.7004132571988 10.1238378125909 10.0083000479634 10.0354550880505 10.7430731840321 0.089451758833359 0.0841294941580087 0.0855575216715099 0.0846177087528669 0.0834296549598265 0.093227754724011 0.0841870237877844 0.0865597142019681 0.0896682273955896 0.0853375206278448 0.0879397335081152 0.0853376976040332 0.0854248659562463 0.0862184230652323 0.085204378665158 0.0879511250283922 0.0982576701673939 0.0896151426699138 0.086970865821385 1 1|0 +|/ 2636828 2637651 2637425.7 2636027 2637912 + gene protein_coding_gene FALSE TRUE AT1G08360.1 60S ribosomal protein L10A (RPL10aA) Identical to 60S ribosomal protein L10a-1 (RPL10AA) [Arabidopsis Thaliana] (GB:Q8VZB9;GB:Q9SJF4); similar to 60S ribosomal protein L10A (RPL10aB) [Arabidopsis thaliana] (TAIR:AT2G27530.2); similar to Os02g0321900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046690.1); similar to Ribosomal protein L1 [Medicago truncatula] (GB:ABE94025.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.397958300713611 -5.39972029759692 0.000548108848435206 1 6.89328464704914 21.3482433172656 -0.397958300713611 0.0423314893867899
AT2G43010_at 9.43481703081533 9.23797701501494 9.69903171347464 9.60789596372944 10.2734706096061 9.78429604152792 9.62775513596772 9.69159057661939 9.81168063405112 9.34620793891 10.5888887519885 10.4160715338805 10.5796372788138 10.3044243450783 10.1764034126241 10.2186603431287 9.94897505133966 9.8271021399273 9.62028896161486 0.101822203330413 0.103525929809415 0.101822203330413 0.106951630800156 0.104334619193506 0.109522478954716 0.107790996437934 0.102698235795383 0.11140546663884 0.109511043968570 0.102282825714304 0.101822203330413 0.103742281102705 0.107050788046999 0.104212268288635 0.101822203330413 0.113898156465431 0.111986235851104 0.104649219752360 2 2 + 17894492 17894858 17894661.6 17893504 17896127 + gene protein_coding_gene FALSE TRUE AT2G43010.1|AT2G43010.2 PIF4 (PHYTOCHROME INTERACTING FACTOR 4); DNA binding / transcription factor Isolated as a semidominant mutation defective in red -light responses. Encodes a nuclear localized bHLH protein that interacts with active PhyB protein. Negatively regulates phyB mediated red light responses. Identical to Phytochrome-interacting factor 4 (Basic helix-loop-helix protein 9) (bHLH 9) (AtbHLH009) (Short under red-light 2) (BHLH9) [Arabidopsis Thaliana] (GB:Q8W2F3;GB:Q9C5I8;GB:Q9SKX6); similar to PIL6 (PHYTOCHROME-INTERACTING FACTOR 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G59060.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99197.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.503966577359566 5.39680458378932 0.000550094088522272 1 6.89024309096899 19.5947273618226 0.503966577359566 0.0932599977850162
AT3G03610_at 5.63402035189506 5.89353803132595 5.7225096191897 6.47427198973888 5.70672649756444 5.60570125551122 4.52426779410495 4.38784147121783 4.82918107171867 3.71742234776636 4.59625719627006 4.74029577658684 4.60951422223275 5.05905786885826 4.3738184139853 5.08062462686573 4.89696141751275 4.64556129621034 4.17480034175739 0.243708388912176 0.251632485425145 0.248787938495211 0.254048235728114 0.246417071318074 0.248079252934931 0.243425306179795 0.249425765802366 0.251617636397591 0.245419807087963 0.240091184645985 0.239506522722658 0.238888719727663 0.249888377691013 0.254718490033305 0.240317839246916 0.247497982425956 0.246475748737069 0.248404835153723 3 3|0 +|/ 870735 871656 871237.889 868798 871819 + gene protein_coding_gene FALSE TRUE AT3G03610.1 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT1G03620.1); similar to Engulfment and cell motility, ELM [Medicago truncatula] (GB:ABE91547.1); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) 0.638589430133114 5.39512814434934 0.000551239083931163 1 6.88849362179053 9.9889742626832 0.638589430133114 0.140730190115532
AT2G21620_at 10.4107101798611 10.2782965963205 10.4299644039588 10.3023793097934 10.4703810634586 10.1632274983293 9.54731619622567 9.73293875634742 8.99375773776646 9.18374432852138 9.63247736116553 9.37091429137007 9.70420853914083 9.59903854647087 9.44481279227889 9.69009273500143 9.66201352370485 9.9177735912345 9.06463446949949 0.103807574187436 0.104831423705799 0.106322438069171 0.103896464028228 0.105247898395547 0.110014015861604 0.104470403157698 0.103970581593532 0.111994967441890 0.105690879992217 0.102125426090938 0.101831364642779 0.103631565896744 0.105462920409020 0.110862435446001 0.105200176989351 0.106917374849341 0.104840658468939 0.107175390617553 2 2|0 +|/ 9255879 9257024 9256318.5 9255653 9257336 + gene protein_coding_gene FALSE TRUE AT2G21620.1|AT2G21620.2 RD2 (RESPONSIVE TO DESSICATION 2) Encodes gene that is induced in response to dessication; mRNA expression is seen 10 and 24 hrs after start of dessication treatment. similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G11930.1); similar to putative universal stress protein [Cicer arietinum] (GB:CAG14983.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.448063440323226 5.39504654044245 0.000551294885042732 1 6.88840845044826 19.5210910511077 0.448063440323226 0.0697842498927169
AT2G47420_at 6.72415687970575 6.6271867097944 6.1666030412899 6.08305693731573 6.9743569007661 6.68067010384847 6.059077937012 5.9916091180701 6.22901657243612 6.42729430941087 5.51828006086002 5.08915650069112 5.62416366403491 5.13195799470276 5.6598048470174 5.32515047864816 5.37027808541767 5.22936491143583 6.35568422361435 0.273853637441884 0.272655105293082 0.272341773467126 0.272341773467126 0.275427296576738 0.277602591393829 0.272341773467126 0.276128889152912 0.295840647550370 0.282265434998765 0.273393671555456 0.272341773467126 0.272341773467126 0.272424035558226 0.283496172203070 0.272341773467126 0.286664868375852 0.280285444815412 0.276069181133205 2 2 + 19465249 19465583 19465397.545 19464555 19465951 + gene protein_coding_gene FALSE TRUE AT2G47420.1 dimethyladenosine transferase, putative similar to ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] (TAIR:AT5G66360.2); similar to Os10g0183900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064257.1); similar to Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] (GB:CAL55025.1); contains InterPro domain Ribosomal RNA adenine methylase transferase; (InterPro:IPR001737); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain RRNA 16S rRNA dimethylase; (InterPro:IPR011530) -0.421574024654987 -5.39461009275869 0.000551593434437776 1 6.88795290299275 12.2662653383110 -0.421574024654987 0.0566571406181859
AT2G30140_at 8.8722133729216 9.38771090905228 10.0915537388634 10.3024423768341 9.08776100233297 8.45016968172525 5.95075058956407 6.4449730824623 7.47887643425698 7.19892581185253 6.63240510651392 7.23236312514402 7.01820108490729 7.031067305957 5.92391469945679 6.805202814831 7.16933579086864 7.4684295932801 7.13836346136602 0.227778364165077 0.2269583512517 0.226605736836282 0.227734174216659 0.227739023324029 0.226246023658805 0.226246023658805 0.228214962763533 0.226767709851963 0.226691252050003 0.232792515642611 0.236765350483805 0.230300672861786 0.230567091921869 0.238211326088239 0.226409631714804 0.232972814185931 0.228285899881161 0.226431334652633 2 2 + 12880192 12880736 12880472.455 12879211 12880897 + gene protein_coding_gene FALSE TRUE AT2G30140.1|AT2G30140.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G30150.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); similar to Os05g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055920.1); similar to Os01g0805500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044561.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.728564707866778 5.38804788014264 0.000556103584510305 1 6.8810994895791 15.664531932192 0.728564707866778 0.169645681294206
AT3G57540_at 4.93675785883593 4.78982934791099 6.25292374842694 6.46768584006886 4.62243279159374 5.27896972428188 4.87364267653914 5.44233843497609 3.73242993949703 4.35703885492308 4.36654539160062 3.9945085235113 4.94803609020518 4.88659204993189 3.87609016124095 4.77943269495819 6.20007015053764 5.15985310650248 4.0472263642732 0.293149301163395 0.293149301163395 0.295117076031506 0.293149301163395 0.293149301163395 0.2986984416753 0.302731819581620 0.296101223206487 0.306986176346404 0.293445260572607 0.298397707448659 0.294596122775542 0.295348446851911 0.293149301163395 0.300430900121961 0.295763252646774 0.293149301163395 0.2966371806004 0.293149301163395 3 3 - 21312631 21313559 21313197.364 21312374 21314038 - gene protein_coding_gene FALSE TRUE AT3G57540.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT2G41870.1); similar to remorin-related [Musa acuminata] (GB:ABF70164.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.68784345734529 5.38691864675425 0.000556883742159589 1 6.87991938443751 9.7440505898086 0.68784345734529 0.156914529043951
AT3G06150_at 8.49902003259289 8.61904817353395 8.14714146808983 8.06962373323964 8.73193567935284 8.76531396016519 9.02044434968789 9.21459765480829 9.37023165189058 8.99637078489635 9.01650562751605 8.74462858877303 8.83699901749537 8.68367946820098 8.68747546597439 8.83396866703483 8.38911001147244 8.64829582644528 8.972786335576 0.0935535471759562 0.0911231249739207 0.0978264151589475 0.10809214113042 0.090867354274941 0.0931238859931812 0.0915975058648661 0.0981685024362521 0.102572354329907 0.0941792391522779 0.097380637224381 0.0939912564020134 0.0909292542959273 0.0975046668462115 0.090867354274941 0.0951104239735965 0.100913226643929 0.0997844292324512 0.09869555181812 3 3 - 1861995 1862487 1862246.818 1861803 1864122 - gene protein_coding_gene FALSE TRUE AT3G06150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19060.1); similar to Os05g0396900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055465.1); contains domain no description (G3D.2.60.40.10); contains domain E set domains (SSF81296) -0.396410299558737 -5.38303134411073 0.000559578511843902 1 6.87585524903072 17.5549968438847 -0.396410299558737 0.0421150380023958
AT4G14550_at 4.48931936062145 4.27833373185383 4.28768756067331 3.77931716035943 4.09211075704527 4.4303923114835 5.87432343016548 5.64105123061421 3.20825350972369 4.26677641294266 6.03188717965049 6.55195921746113 6.98691110032376 6.67605303036416 5.83189312578738 6.69823517858939 7.26925256257041 5.58113989419251 5.68591386191733 0.272290897300467 0.277375265251763 0.280914810712073 0.276284238929087 0.275628586913984 0.28866122377122 0.272290897300467 0.272290897300467 0.298080932064912 0.278415639514531 0.272290897300467 0.272290897300467 0.272290897300467 0.284042612729986 0.274426219139718 0.272290897300467 0.27826437293793 0.280309413153817 0.272881481713180 4 4|0 -|/ 8349050 8349743 8349407.5 8347818 8350015 - gene protein_coding_gene FALSE TRUE AT4G14550.1 IAA14 (SOLITARY ROOT); transcription factor IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19. Identical to Auxin-responsive protein IAA14 (Indoleacetic acid-induced protein 14) (SOLITARY-ROOT protein) (IAA14) [Arabidopsis Thaliana] (GB:Q38832;GB:O23311;GB:Q9C5W8); similar to IAA7 (AUXIN RESISTANT 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23050.1); similar to IAA14 (GB:AAC49055.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.571527579333074 5.37475490722939 0.000565363394938187 1 6.8671934843868 10.0292657791747 0.571527579333074 0.118867988304335
AT4G34090_at 7.53934434349876 7.86861846828227 6.31084194730982 6.9451789700582 7.60093444888815 6.8014797798019 9.04357893198122 8.656641294996 8.58227281968156 8.8257033140154 8.3558769029675 8.91718365563187 7.93719369085128 8.39562453319075 8.49792994620462 8.90418605503212 7.8265996244364 8.20132317552086 8.54491193868153 0.206977055125569 0.196692265084929 0.237842805175904 0.213350325485685 0.202499301702445 0.217026061687369 0.203662553424288 0.202366969180803 0.208920454485162 0.205860932432878 0.211393036745051 0.205032596886031 0.197081932869174 0.210121642458788 0.206368401508488 0.204688776331540 0.213093797660146 0.201507403506231 0.198256787958921 4 4|0 -|/ 16328063 16328995 16328339.8 16326888 16330185 - gene protein_coding_gene FALSE TRUE AT4G34090.1|AT4G34090.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23370.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN61482.1); similar to Os03g0109700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048710.1); contains domain TPR-like (SSF48452) -0.816954982994225 -5.37352180476218 0.000566230846393465 1 6.86590194272416 16.1110534674882 -0.816954982994225 0.197286370623578
AT3G04890_at 7.11782785410765 7.05463069414872 7.05880425239966 6.51533235705343 6.90632670776003 6.65211042900875 7.27506797351317 7.55832221221584 7.1306266125524 7.20987252556788 6.88480798946261 6.34072399886929 6.25007481050261 7.08088381799431 6.14399944651314 6.73322748891626 5.19739803650662 6.76875760398451 6.89600828486598 0.184503728723198 0.187176663508884 0.185166780494418 0.186180520238494 0.185195443272287 0.189609381560018 0.184750236273063 0.182296919532379 0.200915361364664 0.187210238263606 0.18376509654609 0.190716646319399 0.185070108205464 0.183341256656864 0.197136161775046 0.181962044665580 0.203052070106651 0.200310864183901 0.188902592227786 3 3|0 +|/ 1347843 1349025 1348473.111 1347652 1349208 + gene protein_coding_gene FALSE TRUE AT3G04890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46100.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53979.1); contains domain NTF2-like (SSF54427) -0.561085202754648 -5.37083753472335 0.000568124171126889 1 6.86308953632654 13.7692127884038 -0.561085202754648 0.115339922384198
AT3G61980_at 6.64176949919079 6.78839290411435 7.12749177123152 7.03818779142393 7.18153500587811 7.36214560996444 6.79637691447108 6.69811476237114 5.58721626127608 5.72410724903804 5.98812253366388 5.83941520082368 6.39468810586602 6.31834661148508 5.80911358438763 6.18386502329911 6.32639065566328 5.676340635447 5.81674729663609 0.231991826660421 0.216337831359935 0.229041014388638 0.219803197928077 0.215026383868036 0.224826097787022 0.214363939101366 0.215863456260493 0.227585367214028 0.220120300229760 0.214363939101366 0.214363939101366 0.214363939101366 0.214387885455785 0.223899283952923 0.214363939101366 0.226221771626133 0.2163935494424 0.222929003521156 3 3 - 22967352 22967637 22967504.091 22967114 22967858 - gene protein_coding_gene FALSE TRUE AT3G61980.1 serine protease inhibitor, Kazal-type family protein similar to serine protease inhibitor, Kazal-type family protein [Arabidopsis thaliana] (TAIR:AT4G01575.1); similar to Os01g0811200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044589.1); contains InterPro domain Proteinase inhibitor I1, Kazal; (InterPro:IPR002350) 0.401927441383524 5.37022689794358 0.000568555840588135 1 6.86244957346745 12.8424478970704 0.401927441383524 0.0463545142880077
AT2G27530_at 10.4868716607807 10.4198672798781 9.98540599155914 10.0452667226427 10.1286741015114 9.7699671063856 10.5884163778426 10.6863731157333 10.0453864631092 10.1678283885350 10.0394160594792 10.1768274973233 9.85967468571015 9.40092848416175 10.3839075098531 9.32891382720304 9.33497156467687 9.4824039384904 9.97971825483717 0.140650530683556 0.142586576625280 0.142237581490800 0.141594718085920 0.140509554533401 0.142997548150997 0.142759702084567 0.142942334299308 0.164764672632599 0.140089463167124 0.143437474133052 0.142199242806987 0.140367875097927 0.156772747661634 0.142581627129777 0.145736073420641 0.156534211941245 0.149277352806175 0.139595100216255 2 2|0 -|/ 11770536 11771340 11770975.6 11770298 11771922 - gene protein_coding_gene FALSE TRUE AT2G27530.1|AT2G27530.2 60S ribosomal protein L10A (RPL10aB) Identical to 60S ribosomal protein L10a-2 (RPL10AB) [Arabidopsis Thaliana] (GB:P59230;GB:P53029;GB:Q9C5M4;GB:Q9SLF8); similar to 60S ribosomal protein L10A (RPL10aA) [Arabidopsis thaliana] (TAIR:AT1G08360.1); similar to Ribosomal protein L1 [Medicago truncatula] (GB:ABE94025.1); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143) -0.438242108832743 -5.36786266188423 0.000570230532984383 1 6.85997117617644 20.1714510352197 -0.438242108832743 0.066200845324375
AT1G43130_at 8.77421410324943 8.8152775698715 8.89184552100246 8.81283096969754 9.44182510853881 8.8782877178364 8.17459523094652 7.84201386581978 8.13430544032202 7.18355878837168 8.26090477542722 8.2856879690765 7.86448720808429 8.21850191263796 8.06197358951846 8.01300596654376 7.89256339031858 8.16455862556852 7.43614528481137 0.175177126129737 0.172779925782476 0.177044771361549 0.176811942911444 0.183022333262099 0.176469394318984 0.175486010476621 0.177315473458108 0.197539890934656 0.18104274566249 0.167456938908997 0.166124986380057 0.175917121683600 0.170393349788641 0.174764129265224 0.174461694515637 0.175940844628138 0.175406708710863 0.171856646913144 1 1|0 -|/ 16231176 16232441 16231856.222 16230648 16233673 - gene protein_coding_gene FALSE TRUE AT1G43130.1 LCV2 (LIKE COV 2) similar to COV1 (CONTINUOUS VASCULAR RING) [Arabidopsis thaliana] (TAIR:AT2G20120.1); similar to Os01g0867900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044917.1); similar to COV1-like protein [Solanum chacoense] (GB:ABE11607.1); contains InterPro domain Protein of unknown function DUF502; (InterPro:IPR007462) 0.557606364304442 5.36601359879529 0.000571544051752978 1 6.85803214341238 16.5438013946113 0.557606364304442 0.114283479113243
AT2G18750_at 8.25769534985618 8.11447829907867 7.97092689293933 8.26853463859932 8.99924003182975 8.65874002749422 8.0566874448224 7.64154198055248 6.98187752427629 6.52421698756706 7.055157979881 7.13934865283604 7.42356336005595 7.01925648139369 7.17615341231562 7.09224555399098 7.50498182367837 7.45432202612086 6.30577980096087 0.206159181279671 0.206611181653138 0.215156436797285 0.215921123847595 0.204703131817858 0.209186820746502 0.210663689715928 0.226367303388105 0.212549978804130 0.212623135815884 0.214124023765835 0.21065742076348 0.219649829679413 0.216744210356531 0.218611847729829 0.209612887204360 0.214807968161359 0.217678759396570 0.226520945891854 2 2|0 +|/ 8133754 8134337 8133968.375 8132600 8135703 + gene protein_coding_gene FALSE TRUE AT2G18750.1|AT2G18750.2 calmodulin-binding protein|calmodulin binding similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G57580.1); similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G25800.2); similar to calmodulin-binding protein (GB:AAB37246.1); similar to Os02g0177800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046071.1); similar to Os04g0444200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052891.1); contains InterPro domain Calmodulin binding protein-like; (InterPro:IPR012416) 0.542965093077107 5.36417836237459 0.000572851009263421 1 6.85610701592324 15.1645239659226 0.542965093077107 0.109088628540581
AT2G38550_at 8.41953218909376 8.424223766673 8.0329157561274 8.40856036352296 8.44309945592698 7.97790005272783 7.68623562906149 7.57199634467256 6.06457792138015 6.88953241344904 7.40293959575521 7.40560330683608 7.38177129400614 7.35399636071028 7.52922167491007 7.24625169614224 7.64097732909954 7.16257818275769 6.59352647396947 0.18325334017666 0.180665565918333 0.190100115769395 0.183259616571898 0.180665565918333 0.189897960417794 0.186725189404922 0.185907697853129 0.199453685285949 0.187391366358081 0.18117059790838 0.180665565918333 0.187866951055114 0.189375589016863 0.197637153569372 0.181529737325088 0.199588227322123 0.187225163594620 0.184053315547846 2 2|0 +|/ 16140065 16140773 16140289 16139084 16141493 + gene protein_coding_gene FALSE TRUE AT2G38550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57280.1); similar to non-green plastid inner envelope membrane protein precursor (GB:AAA84891.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.532330209231014 5.35994934344799 0.000575875106524126 1 6.85166860281384 15.0737061278724 0.532330209231014 0.105349218119243
AT2G18890_at 4.049917464423 5.04259243491065 2.61245394669025 3.35468526137786 3.62210033510868 2.95778283173279 5.42080917712016 5.54576712894398 5.79918024980941 5.4931084421244 6.84309511709411 6.53040567177464 5.56568474567059 6.40150991781992 5.45502743565407 4.4822785019578 3.23038616363372 5.81100981798157 5.53572780015117 0.203980941613720 0.201791587357867 0.205257555906178 0.208669256434144 0.201791587357867 0.211779060222709 0.211709466535266 0.207544527093577 0.221826579052118 0.205327967164231 0.203641446156902 0.207759304854122 0.210914852961334 0.224836871567101 0.209179422791045 0.201791587357867 0.237840460945571 0.218099408928114 0.203690936333597 2 2|0 +|/ 8191914 8193740 8192753.9 8190972 8193878 + gene protein_coding_gene FALSE TRUE AT2G18890.1|AT2G18890.2 protein kinase family protein|kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18910.1); similar to Protein kinase [Medicago truncatula] (GB:ABE84011.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to ATP binding / protein kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G57670.2); similar to Protein kinase [Medicago truncatula] (GB:ABE84011.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.973715058434373 -5.35961595662473 0.000576114244246867 1 6.85131857507558 9.65039532361007 -0.973715058434373 0.244322491696522
AT1G17210_at 7.88892479090384 8.06206518252671 7.79511236853813 7.77296272067237 8.20711936482582 7.97081554618099 8.27084379510833 8.2132869269223 7.98493208738213 8.23696093602038 7.74628240069945 7.81243841992787 7.80649083202556 7.56015404134422 7.412807789264 7.97946805363374 7.59470699541291 7.69165608314331 8.82354624842432 0.150029107921585 0.144751389703617 0.150436520323475 0.148815149533214 0.140929963102236 0.152050916554244 0.140829522087669 0.146246391601272 0.161095103106945 0.143423732177685 0.143199673176503 0.146138374513737 0.146249519825511 0.157971345604444 0.153123873592707 0.144908623641426 0.170535824867907 0.157864760718363 0.143938955718354 1 1|0 -|/ 5880505 5881232 5880847.4 5880123 5884749 - gene protein_coding_gene FALSE TRUE AT1G17210.1 zinc ion binding similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G48950.1); similar to Os07g0150500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058900.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99224.1); contains InterPro domain Zinc finger, C3HC-like; (InterPro:IPR012935) -0.410128427077596 -5.3592303053764 0.000576391006126651 1 6.85091364976652 16.0471315040633 -0.410128427077596 0.051806823517311
AT4G34490_at 8.8157171597798 8.90279625065599 8.87009450584055 8.93131865596093 8.54742188751254 8.59444564186774 9.20584179366126 9.46338576529038 8.39537700180614 8.60285046007207 9.82580072559812 9.82394008008736 9.82856881075337 9.57200813878782 9.9796802628012 9.52150806167185 9.6561890514319 9.33689984191963 8.56717153383506 0.101432470263970 0.0996486159941425 0.103318305228591 0.101488940192514 0.104142862246272 0.109147375691766 0.101789767062468 0.101862712596027 0.108585166951549 0.104404564145770 0.102822956162709 0.098325713292508 0.100836059142291 0.103696247829021 0.102151001087062 0.0984209816780722 0.105055622116183 0.106543175853146 0.100999151506674 4 4|0 -|/ 16484956 16486023 16485547.143 16484534 16487423 - gene protein_coding_gene FALSE TRUE AT4G34490.1 ATCAP1 (CYCLASE ASSOCIATED PROTEIN 1) CYCLASE ASSOCIATED PROTEIN similar to adenylyl cyclase associated protein [Gossypium hirsutum] (GB:BAA36585.1); similar to CAP protein [Medicago truncatula] (GB:ABE87946.1); contains InterPro domain Cyclase-associated protein; (InterPro:IPR006599); contains InterPro domain CAP protein; (InterPro:IPR001837) 0.405079818421116 5.35723727953196 0.000577823608115654 1 6.84882059971193 18.0238147260057 0.405079818421116 0.0489078613246908
AT4G38960_at 4.95845060556781 4.94287381328237 5.39597143500457 5.6534084232118 5.36785436968561 5.73182176846384 6.67411338669998 6.70754645106641 6.31347391770058 5.80941367304344 5.66470280192378 5.23773371987074 5.45163478655773 5.53623788751834 4.97169790198663 5.83530578605955 6.30119933489758 5.00971016360773 6.29990457126976 0.205660096196098 0.194562858642086 0.195093492630494 0.198567176888468 0.194962628109535 0.190160552293254 0.194454026631506 0.190973807250187 0.197462802739754 0.201835763498978 0.197174227955124 0.191992533650124 0.198045408551092 0.194838690749186 0.198434994094342 0.191524583065512 0.200591392401646 0.203951591676795 0.209553956552215 4 4|0 +|/ 18161570 18162979 18162119.1 18161347 18163300 + gene protein_coding_gene FALSE TRUE AT4G38960.1|AT4G38960.2 zinc finger (B-box type) family protein|zinc ion binding similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT2G21320.1); similar to Os09g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063733.1); similar to Os04g0540200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053439.1); similar to H0115B09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67391.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.461692493965593 -5.3554173024436 0.000579135210856572 1 6.84690867295997 11.4999842908598 -0.461692493965593 0.077412996863086
AT3G55800_at 12.0332402444369 12.1514709052624 11.8415924777634 11.7880900020242 11.6102310396460 11.6140003136329 12.9315051373108 13.1219848505503 12.8274943132544 13.0686449575549 12.9919343122776 13.1589665934429 12.9028836021074 13.0001322313106 13.1543620991293 13.0461584592894 12.7554356815813 12.8753283704305 12.8690068339733 0.0591583868643803 0.0566097046991852 0.0573854095435905 0.0577225270170082 0.0578053239374963 0.0582692099632108 0.0565530777708824 0.0580957812879898 0.0582908384828882 0.0564758518343954 0.0566698202175882 0.0564685540218559 0.0569211607998539 0.0588205193431975 0.0584294528934923 0.0564685540218559 0.0595535332448352 0.0571992695149299 0.0572097667206805 3 3|0 +|/ 20721601 20722373 20722040.1 20720365 20722619 + gene protein_coding_gene FALSE TRUE AT3G55800.1 SBPASE (sedoheptulose-bisphosphatase); phosphoric ester hydrolase Encodes the chloroplast enzyme sedoheptulose-1,7-bisphosphatase (SBPase), involved in the carbon reduction of the Calvin cycle. Increase in SBPase activity in transgenic lines accumulate up to 50% more sucrose and starch than wild-type. Identical to Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (EC 3.1.3.37) (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) [Arabidopsis Thaliana] (GB:P46283); similar to fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative [Arabidopsis thaliana] (TAIR:AT1G43670.1); similar to Sedoheptulose-1,7-bisphosphatase, chloroplast precursor (Sedoheptulose-bisphosphatase) (SBPase) (SED(1,7)P2ase) (GB:O20252); contains InterPro domain Inositol phosphatase/fructose-1,6-bisphosphatase; (InterPro:IPR000146) -0.391068512844146 -5.35352143304358 0.000580504957348769 1 6.8449164000081 25.0901971398069 -0.391068512844146 0.0398919088200522
AT3G13470_at 7.01247993461408 6.68355945242475 6.10000134523732 6.08546767526036 5.71306751597807 6.16520464053807 8.01411540222285 7.95903337864879 6.62870988824251 7.8153258323225 7.3036626265653 8.46498304692506 7.2978692818216 7.06484660355097 9.48368409811775 7.51393117156653 7.06390910735918 7.25514821910538 7.4558893170656 0.167281262729574 0.170019569693439 0.175070678763144 0.184032430470276 0.178712530477962 0.176630478638835 0.183790880996391 0.174670534680591 0.177694176015124 0.167947925030903 0.167607559352925 0.175339868624250 0.172084597303307 0.179827065257435 0.181196716614457 0.167281262729574 0.178367773644466 0.174220634139626 0.171463499975752 3 3|0 +|/ 4391892 4392487 4392259 4389692 4392858 + gene protein_coding_gene FALSE TRUE AT3G13470.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G55490.2); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P08927); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P21241); similar to chaperonin-60 beta subunit (GB:AAB39827.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.510166245445614 -5.35295280585177 0.000580916472563891 1 6.8443187352713 14.2071058090755 -0.510166245445614 0.097259480027042
AT3G04110_at 6.84186513533546 7.80458194445598 5.9356856513926 5.75486265378497 7.21293814967206 6.99060782423014 7.7609399684484 6.95308484114819 5.12955314606447 5.86131288520652 4.60532708431835 4.33487761860193 4.90284318873539 5.34000675475722 4.24036941253934 4.56470031582751 5.35339664133289 4.58319766099532 6.03140557911111 0.262260199622505 0.271048910181162 0.267855195146338 0.272859259264858 0.266287757222586 0.264009479426017 0.270842394021743 0.267502397189480 0.26934622642246 0.274945083007222 0.262852525747612 0.262034515731496 0.274554259926869 0.269714288478425 0.266490880941362 0.27089686490863 0.272443932866496 0.267769381124291 0.268865734622761 3 3 + 1079604 1080202 1079929.364 1077335 1080412 + gene protein_coding_gene FALSE TRUE AT3G04110.1 GLR1 (GLUTAMATE RECEPTOR 1) putative glutamate receptor (GLR1) Identical to Glutamate receptor 1.1 precursor (Ligand-gated ion channel 1.1) (AtGLR1) (GLR1.1) [Arabidopsis Thaliana] (GB:Q9M8W7;GB:Q9ZT37); similar to ATGLR1.3 (Arabidopsis thaliana glutamate receptor 1.3) [Arabidopsis thaliana] (TAIR:AT5G48410.1); similar to ATGLR1.2 (Arabidopsis thaliana glutamate receptor 1.2) [Arabidopsis thaliana] (TAIR:AT5G48400.2); similar to ATGLR1.4 (Arabidopsis thaliana glutamate receptor 1.4) [Arabidopsis thaliana] (TAIR:AT3G07520.1); similar to Glutamate receptor 2.7 precursor (Ligand-gated ion channel 2.7) (GB:Q8LGN0); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.9000475523663 -5.35249301230413 0.000581249457340903 1 6.8438354202836 12.1141609567747 -0.9000475523663 0.223071508821819
AT3G09740_at 9.65392425492278 9.67999455879042 9.770469125917 9.76719052984883 9.79866156010897 9.82491163774234 9.26270912833582 9.31913685810042 9.24679490994104 8.81040886485724 9.63661901019634 9.50237246916438 9.27639421524656 9.42355679268013 9.44831056358981 9.27748219720678 9.16245415005299 9.47248044994486 8.88874746620504 0.110398988310969 0.107355993289545 0.109746377395812 0.110263147347947 0.106663469413501 0.113830609014541 0.111749392832861 0.107255380755671 0.111423961376356 0.112789576359337 0.113076115044326 0.106856467215002 0.107691239782975 0.105630963561753 0.107592506242312 0.109602961371829 0.106683820850603 0.112645422481225 0.109101296598124 3 3|0 +|/ 2990074 2991227 2990589.1 2989436 2991666 + gene protein_coding_gene FALSE TRUE AT3G09740.1 SYP71 (SYNTAXIN OF PLANTS 71) syntaxin of plants 71 (SYP71) Identical to Syntaxin-71 (AtSYP71) (SYP71) [Arabidopsis Thaliana] (GB:Q9SF29); similar to SYP72 (SYNTAXIN OF PLANTS 72) [Arabidopsis thaliana] (TAIR:AT3G45280.1); similar to putative syntaxin 71 (SYP71) [Oryza sativa (japonica cultivar-group)] (GB:AAT58726.1); similar to Os05g0553700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056264.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85201.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.364670998688029 5.35161790542631 0.000581883788804226 1 6.84291544320385 18.8255959457265 0.364670998688029 0.0116905632992949
AT1G05320_at 8.16271315516598 8.6589027365682 6.7220251655317 7.13229109990275 8.35756246858563 8.01552047595962 8.37606277817828 8.24284196345064 7.59582904169056 7.99577291300012 7.54719388592038 8.06467256043655 7.30124060346813 7.8199373432005 7.13004842982626 7.46740301797863 7.55099205826462 7.06532533751177 8.05540499113081 0.217704579649088 0.213004610177310 0.225213482103022 0.218804545417247 0.212589328206694 0.236242287881483 0.220186901282259 0.212589328206694 0.226610277697516 0.231526148987954 0.240008439788229 0.212589328206694 0.230100693105885 0.223507512207858 0.240492766061284 0.220131582381438 0.223586755701077 0.229380923448531 0.234874922402851 1 1 + 1556994 1557690 1557413.25 1553602 1557732 + gene protein_coding_gene FALSE TRUE AT1G05320.1|AT1G05320.2|AT1G05320.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32240.1); similar to unnamed protein product [Candida glabrata] (GB:XP_445454.1); similar to OSIGBa0126B18.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66915.1); similar to OSJNBa0008M17.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE04334.2); contains domain MYOSIN HEAVY CHAIN-RELATED (PTHR23160) -0.596132174938579 -5.35084560534684 0.00058244422612251 1 6.84210343229322 15.6463336320094 -0.596132174938579 0.128254727004626
AT1G15730_at 8.89589252050557 8.9908498078591 8.3649554630517 8.486844086289 8.85646762697653 8.40109218301098 9.33801508790465 9.20644033469186 9.2075738131393 9.39796345268524 9.26333679975857 9.03499014457778 9.01425574488893 8.74731322144724 9.0770512883792 9.07013477099212 8.70838528336265 8.78760936733732 9.43500270366673 0.114047142213276 0.117265449458404 0.122395634944328 0.118810299693426 0.119911618206795 0.123451325693375 0.118704314050616 0.114473315129163 0.123849395091577 0.114047142213276 0.119592552862736 0.117935860253472 0.116125030780386 0.123541452256711 0.114591020842146 0.114047142213276 0.133935315676845 0.117951371084418 0.114531694163378 1 1|0 -|/ 5407536 5408694 5407954.75 5407396 5409979 - gene protein_coding_gene FALSE TRUE AT1G15730.1 PRLI-interacting factor L, putative similar to PTAC17 (PLASTID TRANSCRIPTIONALLY ACTIVE17) [Arabidopsis thaliana] (TAIR:AT1G80480.1); similar to Cobalamin synthesis protein (ISS) [Ostreococcus tauri] (GB:CAL54572.1); similar to Os02g0800000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048412.1); similar to Os04g0599700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053753.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CobW, C-terminal; (InterPro:IPR011629); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) -0.48221083840618 -5.35025066063872 0.000582876362465696 1 6.84147782460032 17.9724352558312 -0.48221083840618 0.0862764600985372
AT1G15370_at 9.33376170018703 9.42011572256632 9.76947177960502 9.9128929669701 9.81486689824128 9.80537668919851 9.80556398821117 9.81652711471017 9.2857136306275 9.40419806613426 10.0397980897635 9.79846120583878 9.729306140691 9.7644746996953 10.0235551277450 9.87590736488334 9.76382170108871 9.9336374274244 9.34017932594777 0.105203219406011 0.101825247553543 0.112342548510920 0.105793748114825 0.103470345291536 0.104352986737329 0.105168271050698 0.106259043798479 0.118270983395492 0.107001704852638 0.102528834389088 0.104689982340250 0.107523958523430 0.110663041275938 0.107591167552862 0.103219500763396 0.107007772165940 0.103465833672208 0.109072903058511 1 1|0 +|/ 5287130 5288336 5287849.556 5287042 5288572 + gene protein_coding_gene FALSE TRUE AT1G15370.1 similar to Lon (GB:ABD28727.1); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.377208248744898 5.3446988428901 0.000586925790039892 1 6.83563686718201 19.3145640544001 0.377208248744898 0.0290798311375223
AT1G78290_at 9.11234682142386 9.0608543592123 9.86559392572257 9.93880269870585 9.74217842637513 9.28484228659691 9.6435918618331 9.43907754907198 8.55975930229166 9.17066166573914 7.10941808049582 7.16265085710815 8.32393016170437 8.06638609139875 6.32643198260353 9.00682722157097 8.71853725762052 6.4102208877519 9.28834405064362 0.149878177800151 0.142569572365306 0.149013748912019 0.151107465493679 0.147032953368898 0.143583190416352 0.142569572365306 0.145185192992199 0.158745226818754 0.144527284654996 0.150331110525494 0.160570041376648 0.14443908276273 0.146271259630410 0.165872797877041 0.142569572365306 0.150449631480485 0.173167025546599 0.142569572365306 1 1 - 29462366 29462981 29462706.727 29462098 29464293 - gene protein_coding_gene FALSE TRUE AT1G78290.2|AT1G78290.3 serine/threonine protein kinase, putative similar to OST1 (OPEN STOMATA 1), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT4G33950.1); similar to Os07g0622000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060312.1); similar to abcisic acid-inducible protein kinanase [Oryza sativa (indica cultivar-group)] (GB:AAO65504.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.485909001114125 -5.34253618612463 0.00058851149174288 1 6.83336011020722 17.834313652996 -0.485909001114125 0.0880699390672077
AFFX-r2-At-GAPDH-3_s_at 11.8758272677875 11.9120782189568 12.1276859423161 12.1334165428540 11.6502886312208 11.5629377078357 11.6041526764362 11.9043182913225 10.8767670499671 11.0981653032047 11.7909474930835 12.0069310748933 11.5973119254220 11.8017397513005 11.9151319130449 11.7127099633284 11.4981763903278 11.4457229857019 10.8407181802940 0.0836015031947203 0.0792695105841393 0.0820235965455364 0.0794749103244964 0.0822945296776155 0.0837092598016975 0.080364463681081 0.080095237740165 0.0848713874920295 0.0812424904462847 0.0791337812460202 0.0783527101754956 0.084022724821736 0.0784004378888328 0.0806135135888093 0.0783527101754956 0.0838844558945856 0.083803054361131 0.0834392087309684 NA NA NA NA NA FALSE FALSE 0.413510925873373 5.34226859424588 0.000588708019530252 1 6.83307834311435 23.1761552173210 0.413510925873373 0.0544714265053849
AT3G28540_at 10.0264174128072 10.2399775922930 10.4298080702865 10.2709716310351 9.37109881255118 8.81008835170788 9.10763292209355 9.04515684082582 8.58599930218215 8.90668387863781 7.25331117888726 6.53517316896701 7.95999384923067 8.17647443406306 5.7420228582966 8.16361110205113 8.50077397770924 7.4761764270328 8.50850957676542 0.192136041978745 0.19727558437822 0.196841622867634 0.201423464906127 0.19471522506907 0.201466646288983 0.200880360581303 0.195997850178038 0.196640684156586 0.195029897438852 0.215691783904696 0.205392366261637 0.196472174547588 0.191769034926696 0.221730730646919 0.194816375186062 0.199038505329925 0.198374850468731 0.197966766931775 3 3 + 10696715 10697184 10696981.545 10695681 10697360 + gene protein_coding_gene FALSE TRUE AT3G28540.1|AT3G28540.2 AAA-type ATPase family protein|ATP binding / ATPase similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28520.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G28510.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE78548.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.537713301804233 -5.34172609381360 0.000589106668143205 1 6.83250706596685 17.7341471427291 -0.537713301804233 0.107999554758022
AT3G48930_at 9.36169770484938 9.70868090688795 8.95243918000726 8.93706352410207 9.01248689038904 8.74822076231269 9.57660386370094 9.96932371843826 9.22937202557684 9.08459114489575 8.99163731867863 9.27641358651838 8.85885342550069 8.66745953402671 9.45986209230981 8.67888994210209 8.0402672368793 8.63068195866198 9.05816264850224 0.117789213942959 0.118447180221265 0.114827258509253 0.118071176554613 0.117660342174212 0.130179871371782 0.118789732606167 0.128072601594684 0.124917660886372 0.116196786265504 0.118411815086202 0.118977746673937 0.129510330130071 0.125979391815274 0.117055929708122 0.119626399234344 0.139378927656575 0.122755652602235 0.115754531274016 3 3|0 -|/ 18152037 18153014 18152380.889 18151756 18153266 - gene protein_coding_gene FALSE TRUE AT3G48930.1 EMB1080 (EMBRYO DEFECTIVE 1080); structural constituent of ribosome Identical to 40S ribosomal protein S11-1 (RPS11A) [Arabidopsis Thaliana] (GB:P16181); similar to RPS11-BETA (RIBOSOMAL PROTEIN S11-BETA), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G23740.1); similar to ribosomal protein S11 (probable start codon at bp 67) (GB:AAA32866.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) -0.520028881044972 -5.33694699354599 0.000592631254939208 1 6.82747222039912 18.2580896070824 -0.520028881044972 0.101602281651345
AT2G40475_at 7.1641645744149 7.05569411943376 5.66684763128287 5.76596263598568 6.49192005360978 6.25322061065763 7.9878551163949 8.68247658718603 7.10431224023754 7.47075769001638 7.38863274624434 8.18270947177432 7.7973454342648 7.28638612406578 8.2634006140852 7.46820434028198 7.01413336194694 7.31897800975218 6.75125634087468 0.273958977588017 0.277532966144513 0.292488353357389 0.287276593641360 0.269769008625026 0.276134755092886 0.26025101323359 0.269170542584719 0.278382697650851 0.261018770607069 0.262870908723468 0.262523660754819 0.263259575027194 0.277511635232443 0.265198667115304 0.272071804316188 0.279215947986446 0.27027048328275 0.266426238784816 2 2 - 16914327 16914797 16914627.455 16913989 16915206 - gene protein_coding_gene FALSE TRUE AT2G40475.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01790.1); similar to Os01g0166500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042116.1); similar to hypothetical protein MtrDRAFT_AC135801g20v1 [Medicago truncatula] (GB:ABE82186.1); similar to Os05g0335500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055233.1) -0.5984307636905 -5.33541790571798 0.000593763803077801 1 6.8258604563938 14.2328922593764 -0.5984307636905 0.129625456126381
AT2G16950_at 8.47165528523315 8.4436586437978 8.69087162232282 8.75882013625885 8.27015045362523 8.06402593523944 8.24333486726679 8.49129865839943 6.97372131836998 6.94823827726923 7.66668143184129 7.74835900874348 7.9577386052456 7.84102265425203 7.35570521008532 8.0697966686899 7.7356713974694 7.86237081717295 7.00968188878063 0.156454596819752 0.156454596819752 0.159799916465470 0.164415572870983 0.160070014461618 0.168044942561343 0.163405540806637 0.159296161481115 0.191033273226642 0.175963282734545 0.159891150304581 0.160849983593901 0.163565364805640 0.162273305490691 0.166748730849911 0.158465556833307 0.165179008107077 0.17293392168478 0.176390420554135 2 2 + 7365926 7367490 7366731.273 7360929 7368284 + gene protein_coding_gene FALSE TRUE AT2G16950.1|AT2G16950.2 protein transporter similar to importin beta-2 subunit family protein [Arabidopsis thaliana] (TAIR:AT2G16960.1); similar to transportin 1 [Homo sapiens] (GB:NP_002261.2); similar to transportin 1 [Bos taurus] (GB:NP_001070008.1); similar to transportin [Homo sapiens] (GB:AAC50723.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.417967284617424 5.33485030401305 0.000594184808003436 1 6.82526206020567 15.8076679764317 0.417967284617424 0.0572322336336117
AT4G36750_at 7.45412932280736 7.7081968996693 7.5774832461164 7.91319515350508 7.84190959193713 7.59539387292811 7.03150612011363 7.18111519291505 7.68414063136096 7.22704833902095 8.16657595730403 7.75806061512149 7.8591817879223 7.98871357284926 7.85107196948091 7.84913721345625 7.74994664642948 7.67546649676921 6.92755880826932 0.177570274266848 0.168029218820168 0.166606555923368 0.165116834164616 0.164422172060942 0.184431904221703 0.171108363968443 0.173050386079563 0.177578803227347 0.177272249368237 0.171798663929656 0.161446887435803 0.163113208493467 0.168248363965611 0.167006216578134 0.163332760128664 0.167166100070684 0.169769915564306 0.175533996220379 4 4 + 17324869 17326103 17325322.182 17324575 17326462 + gene protein_coding_gene FALSE TRUE AT4G36750.1 quinone reductase family protein similar to quinone reductase family protein [Arabidopsis thaliana] (TAIR:AT4G27270.1); similar to quinone reductase 2 [Triticum monococcum] (GB:AAW78582.1); similar to Os01g0784800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044464.1); similar to Os10g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064672.1); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254) 0.485472635889106 5.33125179136055 0.000596861496023908 1 6.82146699390362 15.1087921126492 0.485472635889106 0.08830972758561
AT4G27720_at 5.98509302113841 6.92866274395192 3.17950253079297 4.24400375423373 5.81603996699259 5.06508871613469 7.79414689580638 7.7327426250041 6.62900518654285 6.76621302703551 7.24476292762856 7.91342281762103 6.72158154998873 7.29128744278324 7.80816664320256 6.51332402518131 5.47092244128063 6.5910112908328 6.35098810200436 0.274070894503472 0.264153252719518 0.281730965177511 0.283317819740264 0.25806559329342 0.270882570345103 0.270753852803644 0.261055785131306 0.287433316910127 0.261580249376796 0.25806559329342 0.25806559329342 0.259987347152859 0.271586307781918 0.263755849100201 0.258658052495662 0.28126086451792 0.273589565795854 0.25806559329342 4 4|0 +|/ 13832637 13833328 13832938.1 13831044 13833820 + gene protein_coding_gene FALSE TRUE AT4G27720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64650.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49310.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93637.1); similar to Os10g0519600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065080.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509) -1.08588072949138 -5.32818236423861 0.00059915501507251 1 6.81822810829884 12.6063493638447 -1.08588072949138 0.27856882581434
AT3G09830_at 7.72617245069733 7.66163799326143 8.24728103294724 8.0713924944103 7.28312040062177 7.08317688472927 6.0396810954694 5.93638110080904 7.0703333338761 6.15183037056537 6.21311737121401 6.48359494201568 5.76137099064971 6.53594449059345 5.78142390578679 6.18935775409964 6.3577877188095 6.63944445174086 5.5700261648246 0.218703623096273 0.228395613772748 0.222485525109268 0.230815218686131 0.228059096800195 0.226443528070918 0.223907004703335 0.217237354250492 0.22058902316589 0.219711055530429 0.228059180415805 0.219974424433623 0.230174170057503 0.219276594442191 0.220775243666323 0.217237354250492 0.238226312193205 0.223513774529714 0.221982256233168 3 3 + 3018077 3018575 3018337 3016499 3018988 + gene protein_coding_gene FALSE TRUE AT3G09830.1|AT3G09830.2 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G03320.1); similar to Os02g0819600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048536.1); similar to protein serine/threonine kinase [Lophopyrum elongatum] (GB:AAF43496.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.405733228238096 5.3269636598991 0.000600068309123535 1 6.81694166040228 13.5107646780528 0.405733228238096 0.0506757046807802
AT4G15520_at 6.45003578216626 6.50365326011968 5.86223972879067 5.95788904749081 5.95793545270691 5.91010522882009 5.45507134332947 5.85315914759801 4.94960273739944 4.97806349576324 4.13774016031732 4.33719735342009 4.17318455871859 4.11055531228922 4.03042749869814 4.37347624661448 4.57071505247934 4.56868215439057 5.18575605899428 0.236055114597739 0.228006525872657 0.233450874568934 0.231857267424680 0.232780548012671 0.229021877450588 0.229769965036763 0.231538854790013 0.234814335820126 0.227290603841710 0.227290603841710 0.2327957403746 0.231697059618935 0.230344579429658 0.236848341925829 0.228838521055798 0.231826000690606 0.236378573804798 0.234495816006461 4 4|0 +|/ 8862905 8864318 8863742.8 8862813 8864616 + gene protein_coding_gene FALSE TRUE AT4G15520.1 tRNA/rRNA methyltransferase (SpoU) family protein similar to OBP33pep (GB:AAA79704.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) -0.446748828727127 -5.32350811858514 0.000602666139062435 1 6.81329261325319 10.6565384852952 -0.446748828727127 0.0719344038546809
AT1G12500_at 5.30254894971317 5.4694817319506 4.71706142925298 4.06230625282346 5.70662618058048 5.59810475202315 7.54564488835562 7.44659271021184 6.43537278608142 6.93235666903224 7.7578158848031 7.20105238666255 7.31413658712178 7.12076241482249 7.04786319021395 7.30021462589529 7.0431817932874 6.63847835234245 7.31391859420589 0.211528304061551 0.209621941036314 0.214614775353169 0.217722221069939 0.216950813433683 0.214690116322442 0.214896688486617 0.214090202557551 0.226828708763690 0.212911190505420 0.216130256101779 0.210021981398664 0.210709426632227 0.216181356211082 0.221262970925093 0.221429041217204 0.209621941036314 0.224600162809955 0.211721826405885 1 1 - 4263573 4264394 4264010.818 4263148 4265042 - gene protein_coding_gene FALSE TRUE AT1G12500.1 phosphate translocator-related similar to organic anion transporter [Arabidopsis thaliana] (TAIR:AT3G11320.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE81482.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.56799347255034 -5.32024450405204 0.000605130932853095 1 6.80984430647538 12.7669562806140 -0.56799347255034 0.119665658221647
AT2G41430_at 12.7524712888395 12.9005698238772 12.9121209621294 12.9085869729434 13.1711163867518 13.1622222406215 12.4527335510405 12.4244514578702 12.2712289140340 12.3674126376895 12.8301258429521 12.6241226873326 12.6967401248871 12.6836775193439 12.3623428117463 12.7678466589066 12.8084245783479 12.6759783358984 12.3878277864413 0.0666939370095789 0.0646125373542112 0.0666677338128491 0.0673127453066068 0.072033013558404 0.0682307845124346 0.0674954762514491 0.0663582018156019 0.0778720525289026 0.0678633714694101 0.0656378396936435 0.0654552709403769 0.0649556829629125 0.0666548332214167 0.0698531011918968 0.0648464788606325 0.0667605632241246 0.0667742926575946 0.0670199835980162 2 2|0 +|/ 17276827 17277356 17277036.7 17276310 17277620 + gene protein_coding_gene FALSE TRUE AT2G41430.1|AT2G41430.2|AT2G41430.3|AT2G41430.4 ERD15 (EARLY RESPONSIVE TO DEHYDRATION 15) Encodes hydrophilic protein lacking Cys residues that is expressed in response to drought stress, light stress and treatment with plant-growth-promoting rhizobacteria (Paenibacillus polymyxa), possibly revealing a connection between responses to biotic and abiotic stress. Also identified as a CTC Interacting Domain (CID) protein in a yeast two hybrid screen using the PAB2 protein as bait. Contains PAM2 like domain which mediates interaction with PABC domain in PAB2. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14270.2); similar to dehydration-induced protein ERD15 [Lycopersicon esculentum] (GB:AAF75749.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14270.2); similar to hypothetical protein MtrDRAFT_AC158502g14v1 [Medicago truncatula] (GB:ABD33305.1) 0.372477992038299 5.31905109699497 0.000606034974661199 1 6.80858289371005 25.3471909685001 0.372477992038299 0.0261448015854362
AT4G26530_at 12.217007912744 12.2898155604092 11.9234641540590 12.0253738466518 12.0331628082627 12.0494516810098 12.6924151074651 12.8382559952085 12.4551686927618 12.6029216567408 12.0782957678814 11.9309933495947 12.6499448524260 12.5844663410577 11.8760658301702 12.5269978655057 12.7172325882669 12.2910968029205 12.7134975521681 0.0596359781692497 0.0565449861180515 0.0582719667125015 0.0584430509640127 0.0559230933296967 0.0604629716386772 0.0593889635123848 0.0565271010285133 0.0634926064314727 0.0547725465432164 0.0547150733896403 0.0551687293809115 0.0555226078396644 0.056620312217524 0.0576064186670797 0.0547150733896403 0.0569467737418413 0.0576233594162081 0.0547669034650699 4 4 + 13392246 13392903 13392520.818 13391300 13393114 + gene protein_coding_gene FALSE TRUE AT4G26530.1|AT4G26530.2 fructose-bisphosphate aldolase, putative|fructose-bisphosphate aldolase similar to fructose-bisphosphate aldolase, cytoplasmic [Arabidopsis thaliana] (TAIR:AT4G26520.1); similar to fructose-bisphosphate aldolase [Pandanus amaryllifolius] (GB:AAR88661.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.380076573644938 -5.31737841316097 0.000607304559864531 1 6.80681446982668 24.7198263708687 -0.380076573644938 0.0333871878313849
AT3G18000_at 4.96465404290055 4.45814532298446 4.30174888841537 3.95297352288213 5.54141557995045 4.59760265076378 4.8699038361721 4.63031891165327 3.78303943283337 4.26867761594618 6.06068259660427 6.71786297597252 5.54873375137211 5.6216677366204 6.49620018433397 5.57271460026726 4.88358228485782 5.71083806703642 4.14243271751833 0.195180156964814 0.189865543568696 0.193362121138947 0.189630909852705 0.190588137712882 0.194685187796444 0.188892761197952 0.195308293103951 0.194271401001165 0.203373390925906 0.192428594386930 0.192486513204128 0.188280249936234 0.193291843533098 0.189452616648817 0.187835009557567 0.196077029294337 0.192162171020539 0.194398775029917 3 3 + 6155032 6157306 6156126.762 6154369 6157558 + gene protein_coding_gene FALSE TRUE AT3G18000.1 NMT1 (N-METHYLTRANSFERASE 1); phosphoethanolamine N-methyltransferase Arabidopsis thaliana N-methyltransferase-like protein mRNA. Identical to Phosphoethanolamine N-methyltransferase 1 (EC 2.1.1.103) (PEAMT 1) (AtNMT1) (NMT1) [Arabidopsis Thaliana] (GB:Q9FR44;GB:Q9LVH3); similar to phosphoethanolamine N-methyltransferase 3, putative (NMT3) [Arabidopsis thaliana] (TAIR:AT1G73600.1); similar to phosphoethanolamine N-methyltransferase 2, putative (NMT2) [Arabidopsis thaliana] (TAIR:AT1G48600.2); similar to phosphoethanolamine N-methyltransferase [Oryza sativa] (GB:AAS57723.1); similar to Putative phosphoethanolamine N-methyltransferase 3 (GB:Q9C6B9); similar to phosphoethanolamine N-methyltransferase [Brassica napus] (GB:AAP83582.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.814749158971236 5.31536536843876 0.000608836325034876 1 6.80468554895403 9.6102212761648 0.814749158971236 0.199304519174719
AT4G39910_at 8.85146323200481 8.746565468768 8.98560346733864 8.99301086078066 9.4655521914927 9.13562632222621 8.57395653687033 8.62571125169294 8.16005013803444 8.0179317189072 8.54311182772199 8.43434027814559 8.63863105190762 8.75156647813245 8.52532090098626 8.61718931218514 8.6665597457073 7.76658138041473 8.10115921059995 0.121415666777721 0.126696236167205 0.127584304074267 0.121702757658416 0.126137989838052 0.130022088872774 0.125707391354695 0.126102891925438 0.141383415638199 0.140187665701588 0.129089648865934 0.126013269764324 0.128291115668875 0.128665128917986 0.130968355383633 0.124910650468248 0.125655783201848 0.152187499301724 0.133312128123612 4 4 - 18511858 18512522 18512117.455 18511569 18514332 - gene protein_coding_gene FALSE TRUE AT4G39910.1 ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease Encodes a nuclear ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 3 (EC 3.1.2.15) (Ubiquitin thioesterase 3) (Ubiquitin-specific-processing protease 3) (Deubiquitinating enzyme 3) (AtUBP3) (UBP3) [Arabidopsis Thaliana] (GB:O24454); similar to ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT2G22310.1); similar to Os04g0452400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052951.1); similar to ubiquitin specific protease 46 [Mus musculus] (GB:NP_808229.1); similar to PREDICTED: similar to ubiquitin specific protease 46 [Rattus norve (GB:XP_214034.4); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.422694843755901 5.31422822737133 0.00060970345744302 1 6.80348263490214 17.2151659886038 0.422694843755901 0.0605908937388525
AT1G14810_at 9.07502264095697 9.19246690313755 8.88899553919449 8.54763374994098 8.6429509249139 8.79652952922653 8.59247627649896 8.58003700652208 6.95769730394034 7.85551428924939 8.64624739235222 9.08668110668118 8.37601191995656 8.2323743176548 9.04472667276346 8.26982510029436 8.16650207972941 8.42304030390028 7.73215589587411 0.156515864970467 0.155879745873904 0.158817200630012 0.155896753745349 0.155787709820809 0.162101503234216 0.150478867360930 0.153324012749588 0.188266532226405 0.162603275114484 0.160827143344736 0.151560667609468 0.157756828648192 0.159482091886881 0.166530696052132 0.155799245543481 0.165934767951561 0.160014936334063 0.157253853206416 1 0|1 /|- 5102701 5103898 5103371.875 5102419 5104690 - gene protein_coding_gene FALSE TRUE AT1G14810.1 semialdehyde dehydrogenase family protein encodes an aspartate semialdehyde dehydrogenase, which produces the branch point intermediate for lysine and threonine/methionine biosynthesis similar to Os03g0760700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051347.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL50155.1); contains InterPro domain Aspartate-semialdehyde dehydrogenase; (InterPro:IPR012080); contains InterPro domain Semialdehyde dehydrogenase, NAD - binding; (InterPro:IPR000534); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Aspartate-semialdehyde dehydrogenase, USG-1 related; (InterPro:IPR005986); contains InterPro domain Semialdehyde dehydrogenase, dimerisation region; (InterPro:IPR012280) 0.437290172176005 5.31248752780428 0.00061103344287835 1 6.80164080995406 16.8124133753095 0.437290172176005 0.0679252559832389
AT1G78020_at 9.61793534550186 9.83405874887677 9.45823812641116 9.84191039580972 10.1453906822343 9.92409531683388 10.6559285346920 10.7952950678147 10.5734044656484 10.8119437851519 10.0340061410666 10.1669539240920 10.2502869800851 10.3118938517796 9.66173619559525 10.6894014494251 9.95213404512792 10.0945011255464 10.8058689996972 0.0755007380393704 0.0722096683867423 0.0821819240122322 0.0726307323779155 0.0745899163844816 0.0765480190475681 0.0744624114556978 0.07519899409392 0.072213774193003 0.0729760018017604 0.0765411641453154 0.0722096683867423 0.0722245686910596 0.0743174366285632 0.0785417376649228 0.0727662747467015 0.08220727218755 0.0735839162926565 0.0733385182909377 1 1 + 29343692 29344356 29343988.727 29343587 29344649 + gene protein_coding_gene FALSE TRUE AT1G78020.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G22160.1); similar to Os06g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057184.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25910.1); similar to Os08g0407600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061776.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) -0.484343664987568 -5.31017207984973 0.000612807465385051 1 6.79919001767528 20.4718665093996 -0.484343664987568 0.0886317677626194
AT3G47960_at 8.8631971971123 9.26939934976631 9.5091817097962 9.64708215890293 9.40907333227883 9.05937088069944 9.59157990699867 9.6425008706677 6.81472677628287 8.08769476707728 7.96449883952565 8.07246133889068 8.33353020161108 8.5287382868133 7.88698041545311 8.61898701853154 8.81435603417119 8.42439222662068 7.26607759662917 0.172436992607641 0.174591649281621 0.182483691079819 0.177208123506697 0.176063497675050 0.172436992607641 0.178557696970539 0.176723914491503 0.232035719199969 0.184330089814545 0.179076684915348 0.174068557323992 0.175518597188493 0.181536122688137 0.182805144540871 0.172436992607641 0.179324832986868 0.180051855615409 0.190205180751252 3 3 - 17709255 17709665 17709458.909 17708927 17711754 - gene protein_coding_gene FALSE TRUE AT3G47960.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G18880.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G62680.1); similar to nitrate transporter NRT1-1 [Glycine max] (GB:BAB19756.1); similar to nitrate transporter NRT1-5 [Glycine max] (GB:BAB19760.1); similar to nitrate transporter NRT1-2 [Glycine max] (GB:BAB19757.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.502750510577742 5.30420760400558 0.000617403145472484 1 6.79287254072903 17.2339195550438 0.502750510577742 0.096181887783824
AT2G03120_at 9.38741328559324 9.44581075903767 9.84642388893987 9.7364704809269 9.46798626219645 8.79101446517644 8.52330950018285 8.34225415046641 6.70095926361546 6.96743818678907 7.39988535263678 8.01216209988954 7.64079287033926 7.57004378913361 7.39238115209639 7.46106863705268 7.13321047694556 6.8214990264763 6.77255312872066 0.220985299368452 0.218323655662397 0.224637492096687 0.217717841030134 0.224080739578210 0.225488030981557 0.223024061045880 0.222316260623448 0.263919442404789 0.219093430685381 0.224207435145479 0.217717841030134 0.217717841030134 0.233203857772614 0.233266939244247 0.226533716504825 0.240340095903033 0.232832386727068 0.222863375546307 2 2|0 +|/ 938730 939768 939263.667 937419 940336 + gene protein_coding_gene FALSE TRUE AT2G03120.1 signal peptide peptidase family protein similar to signal peptide peptidase family protein [Arabidopsis thaliana] (TAIR:AT4G33410.1); similar to putative aspartic protease A22B [Solanum tuberosum] (GB:CAJ77509.1); similar to Os02g0117400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045686.1); similar to Os05g0436400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055648.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.575503541509703 5.29724540868954 0.000622815108321925 1 6.78549034464299 16.3138506583715 0.575503541509703 0.123169688487906
AT1G22590_at 5.85112524990716 5.71466563696495 4.66914211718165 4.58549894530088 5.61962333978846 5.37788282966573 6.73964212968282 6.63545839857614 6.53260274545145 6.86910059007076 6.86129058210236 7.17915519933806 7.20326935681815 7.17685107961877 6.69130531327388 7.28314514431267 6.74539847176996 6.42163932061294 6.36335878308547 0.202145440061683 0.198849033871368 0.211157305685925 0.208734600792954 0.202603436432531 0.203862327121726 0.210445774854050 0.199923176178212 0.203408487252826 0.199188642873083 0.195419432093243 0.197157931216713 0.193549380598571 0.195177690812200 0.202118580328524 0.197946718237790 0.218707735178752 0.201133279885051 0.194671094262118 1 0|1 /|+ 7982039 7983959 7983186.625 7981729 7984323 + gene protein_coding_gene FALSE TRUE AT1G22590.1|AT1G22590.2 MADS-box family protein contains domain MADS BOX PROTEIN (PTHR11945); contains domain MADS BOX PROTEIN (PTHR11945:SF14)|similar to AGL80/FEM111 (AGAMOUS-LIKE80), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G48670.1); similar to putative MADS-box protein AGL35 [Oryza sativa (japonica cultivar-group)] (GB:BAD81343.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100) -0.407641638426816 -5.29275387458613 0.000626333940325336 1 6.78072330768023 12.4159352548918 -0.407641638426816 0.0533137943772553
AT3G06790_at 6.78042240871126 6.84044931724627 6.36736876244499 6.19318224928245 5.80983081291181 6.28439071152944 6.3426279028199 7.24074140522546 5.26010653666418 5.7998033451656 3.94951012480777 3.96277236944681 5.5177152979011 4.59454540026966 4.99495158919557 5.4386558642606 5.21833862201963 4.85302890286822 5.94122140871893 0.2289993563583 0.225775603152195 0.227987345760671 0.230221692910034 0.230733990362764 0.228025964393795 0.230273852009285 0.22888929342433 0.235014470706 0.226554300541675 0.228799461064088 0.232271392512693 0.225406766409198 0.226427199391170 0.230627115895780 0.223150668372337 0.237453031701824 0.226926058299012 0.229237457873284 3 3 - 2144610 2145527 2145106.909 2144390 2145782 - gene protein_coding_gene FALSE TRUE AT3G06790.1|AT3G06790.2 plastid developmental protein DAG, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15000.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15000.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1); contains domain SUBTILISIN/KEXIN-RELATED SERINE PROTEASE (PTHR10795); contains domain SUBTILISIN-LIKE PROTEASE (PLANT) (PTHR10795:SF17) -0.744110558314307 -5.29106059251501 0.000627666133655012 1 6.77892523668153 11.7239934637027 -0.744110558314307 0.178654039032835
AT2G14250_at 5.69230202920621 5.45096396048311 5.97248726272433 5.81717916612569 6.10387971821928 6.22377706429682 5.71191032913605 6.23884867986972 4.97013743081598 4.66486194728676 5.47254808205593 5.33320126494000 6.00895735727182 6.04147267757187 5.61576220155405 5.93317242916442 5.0022202898162 5.36870810131405 4.76876343267433 0.256650106016086 0.259160553708331 0.259438385316622 0.255282973391753 0.262759377451757 0.280082676347267 0.255282973391753 0.255282973391753 0.286850391689124 0.274817248162001 0.271073480889745 0.261341484663378 0.256238289537777 0.26338427112712 0.270111191057404 0.255282973391753 0.272469785472389 0.264067092968142 0.261054817012635 2 2 + 6044075 6044402 6044219.375 6044056 6045463 + gene protein_coding_gene FALSE TRUE AT2G14250.1 ankyrin repeat family protein similar to TIP1 (TIP GROWTH DEFECTIVE 1) [Arabidopsis thaliana] (TAIR:AT5G20350.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE84793.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.525787791684887 5.27954438386766 0.00063680879740693 1 6.76668288955381 11.1005483116177 0.525787791684887 0.105889668092746
AT4G33510_at 11.2611743749176 11.2015681149793 11.4955313732118 11.4494000709485 11.2837044774448 11.2751873400548 11.0058174989722 10.9067080800445 10.3445644902432 10.6722276214107 10.8269345501267 10.7727943854906 10.9596424813319 10.7887360557956 11.0203610793548 10.9901128745042 11.3149496540799 11.0550962533009 10.5334674283161 0.0732488025795692 0.0739145826717606 0.076556617232348 0.0733269665407231 0.0736721509818918 0.072894604149782 0.0735642023310411 0.076872084309832 0.0802039217293418 0.0752576562798367 0.0748469441061913 0.070593677921723 0.070593677921723 0.0742184394877509 0.076364485120919 0.070593677921723 0.0732198854736117 0.0727939097022004 0.0763725576585586 4 4|0 +|/ 16117645 16118525 16118255.3 16116450 16118800 + gene protein_coding_gene FALSE TRUE AT4G33510.1|AT4G33510.2 DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE); 3-deoxy-7-phosphoheptulonate synthase|DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE) Enzyme catalyzing the first committed step in aromatic amino acid biosynthesis Identical to Phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplast precursor (EC 2.5.1.54) (Phospho-2-keto-3-deoxyheptonate aldolase 2) (DAHP synthetase 2) (3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2) (DHS2) [Arabidopsis Thaliana] (GB:Q00218;GB:Q9SZC8); similar to DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G39980.1); similar to 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G22410.1); similar to putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica] (GB:ABA54865.1); similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase (GB:AAA32785.1); similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] (GB:CAA75093.1); contains InterPro domain DAHP synthetase, class II; (InterPro:IPR002480); contains InterPro domain Calycin-like; (InterPro:IPR011038) 0.365732017472330 5.27865413647586 0.000637521574547978 1 6.76573553146186 21.9763022146907 0.365732017472330 0.0215980414181878
AT1G33410_at 6.02826825780808 6.81896101717843 5.50550408661382 5.87325402165742 6.17416525340796 6.03743298117552 6.59351073176436 6.97499405349885 6.31554147333405 6.10880920471565 5.13362314912635 5.41865736988396 5.78898238973538 5.65596338363549 5.60157992258859 6.14290184606418 5.90181619754550 5.53950091601103 6.62154332266493 0.242196596065165 0.23532753433099 0.242290296221002 0.240677462434371 0.239384728457466 0.244834058327004 0.240525907724232 0.231829795725017 0.244267369842052 0.243430358087136 0.241127990352922 0.230873169734128 0.231813843135198 0.235170807506117 0.235412898937360 0.235872775798421 0.245263581472991 0.234549402919543 0.237209611915993 1 0|1 /|- 12109755 12111637 12110746.4 12109600 12118808 - gene protein_coding_gene FALSE TRUE AT1G33410.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13231.1); similar to Os02g0142500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045864.1) -0.703548808048241 -5.27837288001057 0.000637746943242794 1 6.7654362028063 12.2490160405857 -0.703548808048241 0.166408080975701
AT1G05060_at 6.96060386441937 7.17725304253216 7.49381014627256 7.34502599159375 8.00720343591103 7.33503496142376 7.15268659218562 6.98623138059837 5.6678355569728 5.65087359404387 6.36431639416469 5.99635892604819 6.51618109222479 6.47059270236346 6.01180845222287 6.61030854245467 6.82399585827298 6.15864519419116 5.69189734769367 0.202896769532322 0.195768398550222 0.203077500057405 0.203155099397989 0.204458672803304 0.211283652397448 0.200023488352719 0.196832598114632 0.221508811042789 0.201178100930217 0.200997408393473 0.197003358982648 0.19736746327801 0.205455764595062 0.206178876875743 0.198452919873387 0.213431272398621 0.206310433002573 0.205764982981308 1 1|0 -|/ 1451667 1452641 1452265.8 1451029 1452871 - gene protein_coding_gene FALSE TRUE AT1G05060.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78856.1) 0.587449321436232 5.27494389099898 0.000640501552643305 1 6.76178575705448 13.3268452076069 0.587449321436232 0.128176320475089
AT1G73230_at 9.7654883973426 9.87509302664217 9.01878537344513 9.26442633999038 9.39707078105905 9.37419206231965 9.78420393670357 9.87862762613601 9.32962844539483 9.51619235361181 9.20067676984131 9.4810903971571 9.14068040615597 9.10859329026445 9.70094080504865 9.02947937519862 8.80049877113228 9.05394489889211 9.43471624322933 0.0977721001809733 0.098458652847778 0.0997043983106173 0.0953893223764804 0.0997226432984447 0.0993779466557237 0.0970331217865716 0.099252128261517 0.100136715369775 0.0930590298245619 0.0970930322574547 0.0969669149750341 0.0961270759286778 0.0993415320817968 0.0993119749942203 0.095492670209173 0.105476516359652 0.100925755553872 0.0964662411921206 1 1 - 27544187 27544983 27544521.545 27543892 27545605 - gene protein_coding_gene FALSE TRUE AT1G73230.1 nascent polypeptide-associated complex (NAC) domain-containing protein similar to nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G17880.1); similar to transcription factor homolog BTF3-like protein [Lotus japonicus] (GB:CAE45592.1); similar to putative transcription factor BTF3-like [Solanum tuberosum] (GB:ABB87130.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715) -0.399796099518274 -5.27473868409959 0.000640666811787773 1 6.76156723110533 18.8529028279331 -0.399796099518274 0.0494924019111589
AT2G18950_at 6.4682863650125 6.44710051957401 7.51240605499721 7.39094625830644 7.59676567865819 6.03045830072212 5.5102067683931 5.0346453268741 3.27242290610437 4.23311959881039 4.20114792450368 4.30929192498966 5.19037319965858 4.88258995228473 4.01393041224514 5.2472870084018 5.16956824061174 4.92787367843981 3.96200869217819 0.236041569014447 0.230885994529778 0.238894539493748 0.240059311596675 0.232101213194090 0.242259651088447 0.22914061539119 0.230653834177113 0.239286852259953 0.23232754273043 0.240423580781324 0.226965789434337 0.22970414092124 0.231240012786364 0.240079179625040 0.230619883546595 0.240308691972153 0.227871417734737 0.230854662838249 2 2|0 +|/ 8215494 8216898 8216230.667 8214424 8217456 + gene protein_coding_gene FALSE TRUE AT2G18950.1 HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1); prenyltransferase Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading. similar to prenyltransferase [Arabidopsis thaliana] (TAIR:AT3G11945.1); similar to homogentisate phytyltransferase VTE2-1 [Glycine max] (GB:ABB70126.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) 1.09391252757590 5.2746847038181 0.000640710291405788 1 6.76150974596949 10.7814893382370 1.09391252757590 0.284077483124289
AT3G02830_at 8.00761852013573 7.81305957810957 7.78380906814062 7.69879853138869 7.75347648421748 7.12266692880229 9.60977379035966 9.26791606056732 8.92009770715164 9.02806964187852 8.80919818220466 9.00220040162422 8.45340855693819 8.97553888663444 8.85286517500032 9.06437552546636 8.45782028815658 8.98910539881113 8.81991680273328 0.175212382051024 0.175175771871626 0.181744929372126 0.179366645634314 0.173082201012153 0.185163700813372 0.167423985805078 0.173051606053117 0.175803966288945 0.168158335681842 0.175703037240670 0.168379245983745 0.170110708999832 0.168847508920660 0.173207351911942 0.16506442174536 0.179537633439241 0.168698530219793 0.167094387164721 3 3|0 +|/ 615140 615565 615407.333 613809 616151 + gene protein_coding_gene FALSE TRUE AT3G02830.1 ZFN1 (ZINC FINGER PROTEIN 1); nucleic acid binding Encodes a zinc finger protein. Identical to Zinc finger CCCH domain-containing protein ZFN1 (ZFN1) [Arabidopsis Thaliana] (GB:Q8GXX7;GB:Q9M8S4;GB:Q9XFB8); similar to ZFN3 (ZINC FINGER PROTEIN 3), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G16540.1); similar to Zinc finger CCCH domain-containing protein ZFN-like (GB:Q9SWF9); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.591017449777897 -5.27290708500988 0.00064214391037006 1 6.7596164208508 17.0062692547697 -0.591017449777897 0.129486916396716
AT4G25700_at 7.39859773603219 7.781484520547 7.54884344176865 7.72597892674843 8.32072294843447 8.35599348738675 9.05489561369842 9.41842383339129 9.30233135038977 9.28582670512296 8.69462231509092 8.91614466944403 8.71977978261263 8.61370208937217 8.58021831025652 9.44736130379011 8.45756450064291 8.54038833535535 9.37810821759515 0.153026747290032 0.142488933995526 0.156206571496834 0.164749073484546 0.139269973581315 0.140740560802967 0.145337450206813 0.139866404548799 0.143375269876252 0.140052181958849 0.138368298287340 0.13793020432549 0.138369969145473 0.142485213420444 0.148070119631472 0.142688609755431 0.151803810338113 0.142763083885897 0.142656313398234 4 0|4 /|- 13094170 13095231 13094778.375 13093943 13095944 - gene protein_coding_gene FALSE TRUE AT4G25700.1|AT4G25700.2 BETA-OHASE 1 (BETA-HYDROXYLASE 1); beta-carotene hydroxylase|BETA-OHASE 1 (BETA-HYDROXYLASE 1) Converts beta-carotene to zeaxanthin via cryptoxanthin. similar to BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2), beta-carotene hydroxylase [Arabidopsis thaliana] (TAIR:AT5G52570.1); similar to putative beta-carotene hydroxylase [Brassica rapa] (GB:AAS55552.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Carotene hydroxylase; (InterPro:IPR005596) -0.500665909607346 -5.27186925624851 0.000642982515795728 1 6.75851078039294 17.2347732740125 -0.500665909607346 0.0965663705144047
AT1G03550_at 5.12107173145009 4.83309202222488 5.92858730650707 5.47699414534429 6.66064620922795 5.88197211298851 3.85952974424770 3.59500346407423 4.55152971857913 5.3617386330065 4.61864914089576 4.50983523506023 5.24453971817606 5.26814276857107 3.87589470801366 5.86278836251144 5.48008530233598 4.76626114263171 5.57418753554156 0.227449109239807 0.230024940579038 0.226780279920136 0.224572145470347 0.230505000532730 0.232935827755730 0.227413838908955 0.236721765271839 0.229437048257592 0.229297784807670 0.224572145470347 0.230721152195599 0.226783717057146 0.243543581289606 0.23180924594166 0.224594029717389 0.245343071983283 0.227446956430768 0.230111079503433 1 1|0 -|/ 885854 887025 886363.875 885623 887956 - gene protein_coding_gene FALSE TRUE AT1G03550.1 secretory carrier membrane protein (SCAMP) family protein similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT2G20840.1); similar to similarity to SCAMP37 [Pisum sativum] (GB:AAC82326.1); similar to Os01g0780500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044437.1); similar to Os07g0564600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060004.1); contains InterPro domain SCAMP; (InterPro:IPR007273) 0.71283247729158 5.26721271244881 0.000646759885799115 1 6.75354762935003 10.2274920134999 0.71283247729158 0.169838512972756
AT2G22300_at 8.63878574712582 8.6477263095705 9.05425381374695 9.281021544321 9.61669838692474 8.75295335561015 7.91216375132814 7.75621794889512 8.13816681370403 8.08250903692901 8.70087892162913 8.53694644547637 8.13548609187682 8.76568148701167 7.97392680012827 8.9291538850008 8.36198389955212 8.0749735533819 7.86295137895894 0.153125614189039 0.151039279140208 0.154409249263680 0.151039279140208 0.157953061569246 0.162353418896921 0.151039279140208 0.160727841455389 0.154013122107668 0.151039279140208 0.152375114145066 0.154834621151200 0.160311873725806 0.154411718882859 0.151039279140208 0.151039279140208 0.151905717961008 0.153979227747995 0.155952157467182 2 2|0 +|/ 9482786 9483522 9483126.2 9478468 9483726 + gene protein_coding_gene FALSE TRUE AT2G22300.1 ethylene-responsive calmodulin-binding protein, putative (SR1) Identical to Calmodulin-binding transcription activator 3 (Signal-responsive protein 1) (Ethylene-induced calmodulin-binding protein a) (EICBP.a) (Ethylene-induced calmodulin-binding protein 1) (EICBP1) (CMTA3) [Arabidopsis Thaliana] (GB:Q8GSA7;GB:Q9FPR9;GB:Q9SID7); similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G64220.2); similar to EICBP.B (ETHYLENE INDUCED CALMODULIN BINDING PROTEIN), calmodulin binding / transcription regulator [Arabidopsis thaliana] (TAIR:AT5G09410.1); similar to anther ethylene-upregulated protein ER1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94398.1); similar to putative calmodulin-binding transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAR06369.1); similar to Putative calmodulin-binding protein similar to ER66 [Oryza sativa] (GB:AAM08530.1); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.672255739115313 5.26550565776206 0.000648150687665375 1 6.7517272122582 16.9388549215425 0.672255739115313 0.156887020303027
AT2G37540_at 9.66721099857796 9.70924741106677 10.3302942188300 10.1143419741192 10.2605597371581 10.0723784924106 9.39726766190531 9.109756216028 9.04545061305789 8.45918217649696 8.99292894474315 8.10954537415902 9.18022687504527 9.07328985956757 8.03946655273064 8.71876572078575 9.14695686786733 8.76764735431069 8.29260086822136 0.152137991133812 0.152583468395843 0.151209279865793 0.151145628758163 0.162974244524275 0.151373341104272 0.155843875182008 0.154410434515509 0.160192593840283 0.160062122099932 0.153654346016755 0.170399678925292 0.151145628758163 0.15927790819596 0.162029197035301 0.157378768928323 0.158045565263044 0.171823508392338 0.162228167345396 2 2|0 -|/ 15758786 15759868 15759166 15758646 15761045 - gene protein_coding_gene FALSE TRUE AT2G37540.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G02540.1); similar to putative pod-specific dehydrogenase SAC25 [Brassica napus] (GB:CAB58175.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.439024295730381 5.26519917621238 0.000648400734327628 1 6.75140032314004 18.5089727535503 0.439024295730381 0.070609154013092
AT1G69160_at 5.83625921816665 5.48901078433012 7.41959830608286 7.22885223581204 8.303387539375 8.36170518800008 8.34409751680218 8.76297329302751 7.29798014171262 7.61164434214867 8.1870078247312 7.27960322512802 9.04082011244766 8.33566304915477 6.60162773097559 8.7913275651537 8.45999475963422 7.30903794145394 8.19628185076918 0.221349428866099 0.207844254168253 0.199471170121726 0.196081841398036 0.200538489575725 0.19863762286302 0.194538782191013 0.200822043721650 0.212084741933408 0.207859797494670 0.193864393929092 0.195352208908999 0.198298577267155 0.200530693140375 0.204050995395364 0.193750511225282 0.192685197545716 0.199583992238954 0.195993686315213 1 1 + 26004358 26004887 26004618.545 26003877 26005251 + gene protein_coding_gene FALSE TRUE AT1G69160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13980.1) 0.509483556055305 5.26393209983999 0.000649435608930423 1 6.75004869974757 15.3195375373471 0.509483556055305 0.100285648340427
AT3G61690_at 6.27642003680043 6.24984083624618 6.60876467649877 6.28124147599504 6.19011438504445 6.45009929523816 5.79819113010961 5.35350887708325 5.84170158992318 5.60047854700862 6.25479081115344 6.50624603509887 6.5532977473342 6.33204943037656 6.03048621030762 6.3448090620825 6.43717776179352 5.88928037559144 5.6859704395728 0.193647069526457 0.190398698312354 0.188099597318061 0.191526783783863 0.186913519927533 0.202339603795865 0.18920944309378 0.190627314367909 0.202347113351974 0.195818757813636 0.197075723512749 0.186913519927533 0.195881669466062 0.199693977779241 0.195099664588951 0.189658322865799 0.197339780687325 0.19522760388087 0.195082295050097 3 3 + 22843992 22844797 22844357.8 22839324 22845019 + gene protein_coding_gene FALSE TRUE AT3G61690.1 nucleotidyltransferase similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51620.2); similar to Nucleotidyltransferase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94595.1); similar to Os03g0210800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049344.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934) 0.523599195924987 5.26169995622361 0.000651263071085566 1 6.74766692170028 12.1524729414864 0.523599195924987 0.105735176084183
AT3G24170_at 9.10695629677617 9.35109919238852 9.0132641010131 9.1721872868144 8.76365811331011 8.31126007125796 10.0973951922026 10.2920142599628 9.37142833000757 9.68348969279555 9.26588631219313 9.43829111225451 9.24656391930898 9.5114142506742 8.88525642717605 9.39403917070057 9.18940376685139 9.32543060741191 9.13518266383111 0.132086887080479 0.130102879838735 0.141361912393020 0.138000964514204 0.140000920456217 0.145985653189871 0.134906714023763 0.130732945090389 0.138661636308067 0.136475894503095 0.125270233183487 0.131040755996183 0.127867809305613 0.13622149169901 0.130778319257790 0.133117462172269 0.133483966914512 0.137093607788654 0.125270233183487 3 3|0 -|/ 8729807 8731231 8730419.286 8729517 8734548 - gene protein_coding_gene FALSE TRUE AT3G24170.1|AT3G24170.2 ATGR1; glutathione-disulfide reductase Encodes a cytosolic glutathione reductase. Identical to Glutathione reductase, cytosolic (EC 1.8.1.7) (GR) (GRase) (OBP29) [Arabidopsis Thaliana] (GB:P48641;GB:Q94BM6;GB:Q9C5I4); similar to GR (GLUTATHIONE REDUCTASE), glutathione-disulfide reductase [Arabidopsis thaliana] (TAIR:AT3G54660.1); similar to glutathione-disulfide reductase (EC 1.8.1.7) - turnip (GB:T14394); similar to Glutathione reductase, cytosolic (GR) (GRase) (GB:O04955); similar to glutathione reductase [Brassica oleracea] (GB:BAD14936.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Glutathione reductase, plant; (InterPro:IPR006324); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain Trypanothione reductase; (InterPro:IPR001864); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.505719187645187 -5.25885672671646 0.000653598941809348 1 6.74463181369554 18.6028472765654 -0.505719187645187 0.099020375878138
AT4G32040_at 8.80414556302932 8.67245162869163 9.02857170473251 8.871817777275 9.30692965536684 8.97856662497309 8.44666505734042 8.08840021098526 7.93138870370567 7.47973663394801 8.02477849259796 7.84608340892304 8.08209853927105 8.01155363735498 7.77013619279078 8.2088093573716 8.24725506811664 8.08992603860234 7.41117972446559 0.159893759858821 0.158360418591837 0.160597095318312 0.161482653612887 0.160842776438887 0.161544912251198 0.155259640853330 0.159490756487434 0.177115288127748 0.161750544391936 0.162124601602083 0.155619516939404 0.159833403977146 0.160861089029442 0.165871865200203 0.153066227327707 0.169596519685119 0.162822666444278 0.166919577019491 4 4|0 +|/ 15495098 15495881 15495508.1 15494071 15496362 + gene protein_coding_gene FALSE TRUE AT4G32040.1 KNAT5 (KNOTTED1-LIKE HOMEOBOX GENE 5); transcription factor A member of Class II KN1-like homeodomain transcription factors factors (together with KNAT3 and KNAT4), with greatest homology to the maize knox1 homeobox protein. Regulates photomorphogenic responses and represses late steps in gibberellin biosynthesis. KNAT5 promoter activity showed cell-type specific pattern along longitudinal root axis, primarily in the epidermis of the distal end of primary root elongation zone. Identical to Homeobox protein knotted-1-like 5 (KNAT5) (Homeodomain-containing protein 1) (KNAT5) [Arabidopsis Thaliana] (GB:P48002;GB:O49387); similar to KNAT3 (KNOTTED1-LIKE HOMEOBOX GENE 3) [Arabidopsis thaliana] (TAIR:AT5G25220.2); similar to Homeobox protein knotted-1-like 3 (KNAP3) (GB:O04136); contains InterPro domain ELK; (InterPro:IPR005539); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain KNOX2; (InterPro:IPR005541); contains InterPro domain KNOX1; (InterPro:IPR005540) 0.485600448373664 5.25335588812957 0.000658144118555873 1 6.73875567503867 16.5959510840917 0.485600448373664 0.0912592355307235
AT4G27320_at 7.97874277085829 8.49804588274685 8.78158868477034 9.08124080476046 9.31267084482771 8.8265717903751 8.5085879768615 8.76863493674475 7.8665372433296 7.53297105527537 8.55763190221687 8.22225123307944 8.49209765568462 8.20841920534117 7.97571100430531 8.71434261637229 8.20669918852954 8.11600728507858 7.4885465953247 0.214907334281013 0.206672641610232 0.206921671963526 0.213271492786350 0.214769775914122 0.206686181461992 0.216161810253534 0.206773988184914 0.225469406312492 0.213910151705443 0.223811663614927 0.207423302097499 0.212014560332370 0.227544390748941 0.223928063464177 0.206672641610232 0.209817068097226 0.212234191390077 0.214827659234444 4 4 - 13679956 13680372 13680169.364 13678474 13680930 - gene protein_coding_gene FALSE TRUE AT4G27320.1 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G54430.1); similar to Os07g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059943.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC65369.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.622154259698322 5.2507473974104 0.000660311451408437 1 6.73596734133189 16.6900087828111 0.622154259698322 0.140950216645747
AT3G54790_at 5.11254788484911 5.85955165289615 5.7101915173152 5.84372500550658 6.15060694197812 6.27614294522627 5.6192526813567 5.73402648587809 5.22737045181796 5.1767178049563 5.90800487954776 5.89156624217186 6.01420275495247 5.92393367673063 5.72869791199394 5.59974332898067 6.52757658594625 5.60794489579843 4.91888638523612 0.259171416353522 0.249687821751735 0.257969612769148 0.255993925779288 0.249115251784677 0.25372678759189 0.253118939762185 0.250409121172667 0.256149271311104 0.253795065571386 0.252190271344746 0.25008872108901 0.256308206200294 0.256280017485623 0.261138386468086 0.249115251784677 0.256088333239995 0.265011449374537 0.257133511114443 3 3 - 20292984 20293435 20293227.273 20292513 20296104 - gene protein_coding_gene FALSE TRUE AT3G54790.1|AT3G54790.2 armadillo/beta-catenin repeat family protein / U-box domain-containing protein|binding / ubiquitin-protein ligase similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23140.1); similar to arm repeat-containing protein [Nicotiana tabacum] (GB:AAO61490.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.603186248386659 5.24932115321325 0.00066149976788559 1 6.7344422538829 11.2921891386351 0.603186248386659 0.13458025570849
AT3G49390_at 6.59640611336412 6.65602622025335 6.63704698624493 6.45968940840797 6.96935713860464 6.66667771202696 6.49538272605071 5.44698046110996 5.1557597921398 4.72180393646408 5.64846351815077 6.37670674691871 5.58432103422445 5.70353718576614 6.14641055444084 5.48726817657448 5.34536568091176 5.85726197215228 3.9043607341085 0.222451726431672 0.230334986780000 0.242399184730806 0.237585957850861 0.223860494523167 0.229397225702661 0.221419198381764 0.230009577189806 0.227158513869972 0.227415732102460 0.221422905480159 0.232841563986884 0.221127586961635 0.221127586961635 0.232682270389127 0.227597354726224 0.230862327899364 0.234872183892829 0.229670855797722 3 3|0 -|/ 18325905 18327420 18326889.6 18325512 18328983 - gene protein_coding_gene FALSE TRUE AT3G49390.1|AT3G49390.2 CID10; RNA binding / protein binding|CID10; RNA binding RNA-binding protein, putative, RNA-binding protein RBP37, Arabidopsis thaliana, PIR:T04196.Member of a family of PAB2 domain containing proteins. similar to CID11, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G32790.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.779592984432445 5.24880727054006 0.000661928494313968 1 6.73389266904824 11.6722666855311 0.779592984432445 0.191596790280828
AT1G02780_at 11.9842533805953 12.1766370076294 11.8640125338981 11.8241738380517 11.9396354268847 11.8447557170056 12.3515547996296 12.4169724662057 12.0148485822728 12.0784362442246 11.6702844094020 11.7104268259029 11.7022513258617 11.5998943297199 11.8302875102216 11.4283504144045 11.5675422130230 11.4455344157358 11.9686534892275 0.0790357550088963 0.0775119133694 0.07745017779929 0.07745017779929 0.0800912612636123 0.080701984863291 0.0823248906228887 0.0796735456727425 0.0832248521899979 0.078067962368818 0.080107150399336 0.0776345525653608 0.07745017779929 0.07745017779929 0.07745017779929 0.07745017779929 0.0835832110177688 0.0814321468649468 0.078056749360975 1 1|0 -|/ 608464 609302 608776.429 607808 609465 - gene protein_coding_gene FALSE TRUE AT1G02780.1 EMB2386 (EMBRYO DEFECTIVE 2386); structural constituent of ribosome Identical to 60S ribosomal protein L19-1 (RPL19A) [Arabidopsis Thaliana] (GB:Q9SRX2); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to Ribosomal protein L19e [Medicago truncatula] (GB:ABE84969.1); contains InterPro domain Ribosomal protein L19e; (InterPro:IPR000196) -0.38276735463134 -5.24871096414253 0.00066200887528443 1 6.73378966651891 23.8702331641253 -0.38276735463134 0.0394170555490587
AT3G50685_at 11.3994214467235 11.4444023750797 10.5954504356208 10.6760857662951 10.8287902436765 10.9725264946101 11.7489139032099 12.1665545990028 12.2594529974475 12.3827649867311 12.4986305784415 12.6179408334710 12.1732815922501 12.4294722237042 12.3873351807181 12.3771632377648 11.7544812924621 12.3389350589599 12.2806346953862 0.0626717961194377 0.0639859164079691 0.0620714656247257 0.0637259962072079 0.0608029241729625 0.0653664630019635 0.065051367194749 0.0649389679168037 0.0652851815434177 0.0620509931657158 0.062065938108893 0.0618735255164513 0.0640010521041714 0.0612324335800734 0.0637756650796826 0.0608029241729625 0.0726617838952212 0.0638535568853205 0.0608029241729625 3 3 - 18845264 18845607 18845429 18845136 18845815 - gene protein_coding_gene FALSE TRUE AT3G50685.1 similar to p-166-4_1 [Pinus resinosa] (GB:AAY17046.1); similar to Os10g0213700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064326.1) -0.453536203043383 -5.24321623585909 0.000666612626176767 1 6.72791016638364 23.5439044378155 -0.453536203043383 0.0780875879164976
AT3G17020_at 11.8371312023317 11.8137054876451 11.9335632316010 11.9348463406175 12.0955062621565 12.0411114135299 11.3277886897966 11.1912510990846 10.8661291369024 11.1438844200461 11.4083071706279 11.1562359650654 11.3396999736834 11.1812392909220 11.3177747632388 11.2103093903712 11.4962342063803 11.3326495758268 11.0814441470397 0.0733827822371776 0.0710294777301923 0.0720719738342907 0.0725049272325973 0.0714066222729201 0.076385460098348 0.0694459758729674 0.0718024304790313 0.0850829207957672 0.0731055827906622 0.0694459758729674 0.0697620384834612 0.0754246317006543 0.0725094724568413 0.0712235759740158 0.0694459758729674 0.0696340155745531 0.0720066530805789 0.0728840201173073 3 3|0 -|/ 5802743 5803982 5803349.2 5802555 5804163 - gene protein_coding_gene FALSE TRUE AT3G17020.1 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to Os05g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054704.1); similar to USP family protein [Triticum aestivum] (GB:AAX13276.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.366804041473374 5.24315936572035 0.000666660456561366 1 6.72784928585447 22.9397590625173 0.366804041473374 0.0257565132684216
AT3G54920_at 6.25642434474206 6.37711081616447 4.33557465342536 4.13368950776495 5.92384599256117 5.63453549166931 5.19680509528754 5.11440644840734 7.17954658657364 6.37175617867542 7.97783534158817 7.39639385908494 6.2965484307244 7.06230204279791 7.50021926366708 6.258598135504 5.02422824459392 6.26606298476915 6.99429582564137 0.255267188934058 0.256558023012203 0.273387212258166 0.263598081982407 0.257635804397067 0.267792563777248 0.260082736956569 0.254186842396504 0.264977823346799 0.254186842396504 0.257568001901015 0.264976619425170 0.261424005841443 0.255041605984845 0.254186842396504 0.254186842396504 0.278531707100295 0.264706376760145 0.254186842396504 3 3|0 +|/ 20358056 20359360 20358760.333 20356073 20359560 + gene protein_coding_gene FALSE TRUE AT3G54920.1 PMR6 (POWDERY MILDEW RESISTANT 6); lyase/ pectate lyase Powdery mildew resistant mutant encodes a pectate lyase-like protein Identical to Probable pectate lyase 13 precursor (EC 4.2.2.2) (Powdery mildew- resistant mutant 6) (Powdery mildew susceptibility protein) (PMR6) [Arabidopsis Thaliana] (GB:Q93Z04;GB:Q9SV40); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G04310.1); similar to pectate lyase-like protein [Brassica napus] (GB:AAQ87025.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.427517295292051 -5.23944883376065 0.000669789270273161 1 6.72387585211957 12.1572022444884 -0.427517295292051 0.0660817202921985
AT1G48620_at 7.56387607944336 7.16852315395555 7.59801472228325 7.78838775387298 7.94766997996805 8.18945419382728 6.33847753679185 7.1059034334562 6.56604446889879 6.72414110287388 7.15263576261925 7.39319185613465 7.16176235558786 7.28357654377568 7.49208973274591 7.54303608753947 7.19563791976935 6.73393806355505 6.9101057087377 0.174594506552338 0.182568552583399 0.170452694404683 0.173718500834548 0.177401129836811 0.170452694404683 0.187954572436234 0.190429328487817 0.197397419780000 0.185693683019974 0.179916162591205 0.180577153859257 0.174296122227914 0.184175935422867 0.171168919823108 0.174376808923856 0.181080358311938 0.187032724413332 0.207936163085956 1 1 - 17977869 17979000 17978503.455 17977365 17980057 - gene protein_coding_gene FALSE TRUE AT1G48620.1 histone H1/H5 family protein similar to HON4, DNA binding [Arabidopsis thaliana] (TAIR:AT3G18035.1); similar to hypothetical protein MtrDRAFT_AC139526g21v1 [Medicago truncatula] (GB:ABE80152.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.673869862477632 5.23691116554495 0.000671938296861049 1 6.72115697497956 14.4514953402262 0.673869862477632 0.158602304224122
AT3G03120_at 5.44812510840327 5.82963708797957 6.36950913902738 6.1248265662898 6.66660306837718 6.36196691333004 5.98121085290514 6.05067660177327 4.86829936464996 4.95355240260451 5.17554742547544 5.1285505487165 5.90994502284937 5.42374204837831 4.7468716492634 5.67984753910962 5.71478558142199 5.47879597046169 5.0961753446649 0.212037538568605 0.196741455266719 0.196874516777378 0.197514095752694 0.196434571367032 0.210796934441366 0.19812793048346 0.200841021797497 0.197382303217549 0.203805350385937 0.197258243183532 0.196055055412817 0.199689891976625 0.208870212142935 0.204656468659847 0.196616202387664 0.205970159020662 0.205979101559491 0.203784657489611 3 3|0 +|/ 717365 718889 718257.5 717160 719322 + gene protein_coding_gene FALSE TRUE AT3G03120.1 ATARFB1C (ADP-ribosylation factor B1C); GTP binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor 1; ARF 1 (GP:385340) {Drosophila melanogaster}, other ARFs and ARF-like proteins. similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT5G17060.1); similar to ADP-ribosylation factor [Daucus carota] (GB:AAW67545.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.493949514113605 5.23573042199946 0.000672940767672867 1 6.71989152739344 11.2940376308520 0.493949514113605 0.0952664948490764
AT1G69980_at 6.18124892590299 6.55339705583374 6.57597389393553 6.46768541872131 6.53640262152221 6.5835231622671 6.37353363423072 6.23382875113444 5.25645376946099 5.41923731481898 6.3472834842164 6.40026849803944 6.14307531079156 5.94634356643274 5.72065358188102 6.2385136778644 6.48678147628856 5.54520185945116 5.61695295991557 0.242108514807323 0.228273606596137 0.228273606596137 0.231134290190049 0.232589354595398 0.240013362957204 0.237344309935582 0.250532056238493 0.257745003321681 0.234415978062292 0.236794763883274 0.228273606596137 0.244489319444989 0.234502732255534 0.241518743905424 0.241851542553253 0.237860227667877 0.230912427348678 0.23752904747575 1 1|0 -|/ 26360262 26361266 26360704.4 26360043 26361330 - gene protein_coding_gene FALSE TRUE AT1G69980.1 similar to Os09g0560400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063926.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45961.1) 0.439014008070774 5.23572446318224 0.000672945830933318 1 6.71988514047523 12.2053974479114 0.439014008070774 0.071762083010175
AT2G42540_at 10.3490727206349 10.1736428521956 6.86570187697483 6.59939758338455 8.13521008606118 8.35806451390537 9.44669420396992 9.58919454461943 3.15716606610781 8.12180400037433 6.50091142510093 7.2043418839738 8.20249021323258 7.81904174230166 6.37701289358717 7.99968104277232 7.10253943302789 6.5005497528265 5.793851117091 0.221007145971782 0.22021363706709 0.224580743173202 0.218856502271865 0.22666171138713 0.214369796377268 0.216747700260118 0.214872796486086 0.259802842879285 0.216001709991348 0.224736852011656 0.212701608604447 0.223493821273040 0.218176079222179 0.217042009510953 0.223437741079433 0.216589999875866 0.223987564095916 0.223482790841868 2 2 - 17718351 17719001 17718747.818 17718115 17719408 - gene protein_coding_gene FALSE TRUE AT2G42540.1|AT2G42540.2 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. similar to cold-responsive protein / cold-regulated protein (cor15b) [Arabidopsis thaliana] (TAIR:AT2G42530.1); similar to COR15a [Arabis pumila] (GB:AAS98217.1); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241); contains domain COLD-REGULATED PROTEIN COR15 (PTHR23241:SF10)|similar to cold-responsive protein / cold-regulated protein (cor15b) [Arabidopsis thaliana] (TAIR:AT2G42530.1); similar to COR15a [Arabis pumila] (GB:AAS98217.1); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241) -0.438838455722496 -5.2351940909104 0.0006733966591254 1 6.71931663925272 15.1417530191568 -0.438838455722496 0.071700634043368
AT4G28830_at 5.02349087024554 5.15701182275955 5.03166767092596 5.04901939506261 5.65647808246615 5.58776438788043 4.67922513901488 4.87821338431576 4.24701057288314 4.03837199734793 4.48080443389669 4.38244199493039 4.40006238749927 4.93767127682862 4.89539298221039 4.6152469321149 4.59444852854558 4.20524889696535 4.27850000650087 0.311080911240557 0.275101990378221 0.283724592905274 0.284047161808576 0.279126432137528 0.274306269396428 0.270414844269597 0.271958537056965 0.300501383430309 0.277995196001126 0.273385144354928 0.270414844269597 0.278095632173456 0.276506002467379 0.284249168319304 0.270414844269597 0.294720529840133 0.279626163024617 0.27765705478346 4 4|0 +|/ 14232531 14233896 14233396.857 14232452 14234048 + gene protein_coding_gene FALSE TRUE AT4G28830.1|AT4G28830.2 similar to early nodule-specific-like protein ENOD8 gene [Triticum aestivum] (GB:AAP80670.1); similar to Os06g0162600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056890.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216)|similar to MGC130850 protein [Xenopus laevis] (GB:AAI10730.1); similar to Os06g0162600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056890.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.386350450106554 5.22433976703259 0.00068269564494079 1 6.70767100890557 9.50879661310113 0.386350450106554 0.0432452561778975
AT3G18830_at 9.86620986919349 10.2517528425848 10.8355466204213 10.9896205059835 9.95284138735598 9.9416501331826 7.98870249428174 8.88781792684462 9.8491066726677 8.98511133007303 9.55305751510389 9.98691478104205 9.37933695050362 10.1725332029041 9.46127794397554 10.0387941782536 9.18966191799008 9.31122462976095 9.34823848706138 0.107724776426894 0.108338939797572 0.11173966472679 0.109884371899802 0.107724776426894 0.112069028808775 0.115368367362780 0.108535498695957 0.111544869330443 0.119000049935679 0.109223247674157 0.107753527595478 0.108678977814721 0.107724776426894 0.111577123152401 0.107724776426894 0.116400434418604 0.114577532090622 0.109510823843018 3 3 - 6489059 6489572 6489344.636 6488868 6491279 - gene protein_coding_gene FALSE TRUE AT3G18830.1 ATPLT5 (POLYOL TRANSPORTER 5); D-ribose transporter/ D-xylose transporter/ carbohydrate transporter/ galactose transporter/ glucose transporter/ glycerol transporter/ hydrogen:sugar symporter/ mannitol transporter/ monosaccharide transporter/ myo-inositol This gene encodes a plasma membrane-localized polyol/cyclitol/monosaccharide-H+-symporter. The AtPLT5 symporter is able to catalyze the energy-dependent membrane passage of a wide range of linear polyols (three to six carbon backbone), of cyclic polyols (myo-inositol), and of numerous monosaccharides, including pyranose ring-forming and furanose ring-forming hexoses and pentoses. This gene belongs to a monosaccharide transporter-like (MST-like) superfamily. Identical to Polyol transporter 5 (Sugar-proton symporter PLT5) (Protein POLYOL TRANSPOTER5) (AtPLT5) (PLT5) [Arabidopsis Thaliana] (GB:Q8VZ80;GB:Q9LS92); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT2G16130.1); similar to mannitol transporter, putative [Arabidopsis thaliana] (TAIR:AT2G16120.1); similar to putative polyol transporter protein 4 [Lotus japonicus] (GB:CAJ29291.1); similar to putative sugar transporter; member of major facilitative superfamily; integral membrane protein [Beta vulgaris] (GB:AAB68029.1); similar to putative sorbitol transporter [Prunus cerasus] (GB:AAM44082.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.711870927592009 5.22414819138297 0.000682861019146813 1 6.7074652788615 19.3546438740855 0.711870927592009 0.171395417619909
AT1G23230_at 5.23287801475071 5.91601852035015 5.38956425745153 5.73678709987041 5.34998269414097 4.89671442335994 5.53603227984316 5.68785897121825 5.54427070020654 5.49783454682292 4.06527173390631 3.96576324641488 4.80158317309241 4.89394273387308 3.69269575643076 5.00340130953601 4.62548037927966 4.50439048655092 5.52915137698521 0.243944383968555 0.233281986787964 0.238038615395866 0.242826686952668 0.232662618543977 0.241397567000531 0.233551395291077 0.233644769349265 0.241776934137058 0.235233482480824 0.233041904583175 0.232662618543977 0.232662618543977 0.232957668583365 0.237325509253152 0.232662618543977 0.237678127826292 0.240948867615783 0.234186448571721 1 1|0 +|/ 8250803 8251673 8251254.3 8244470 8251730 + gene protein_coding_gene FALSE TRUE AT1G23230.1 similar to Os02g0732700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048029.1); similar to Mediator complex subunit 23 CG3695-PA [Drosophila melanogaster] (GB:NP_611735.1); contains domain SUBFAMILY NOT NAMED (PTHR12691:SF1); contains domain FAMILY NOT NAMED (PTHR12691) -0.664810466727121 -5.22121094813392 0.0006854020064105 1 6.70431020300497 10.4521386878183 -0.664810466727121 0.156300853435291
AT1G16470_at 8.82662091063181 8.95783532135094 9.3755717561395 9.46098504935523 9.05892578666695 8.81902778796445 8.82072523388886 8.6996251671425 8.25217352506856 8.0324036636406 8.69869270184172 8.71480712205756 8.38071668193007 8.79839455037213 8.427118993708 8.48026130976976 8.53234933925325 8.5919360785699 8.08938664856868 0.187580862596947 0.182650399788162 0.192816718510538 0.195123896441237 0.182051766860021 0.196888606593356 0.189942216143823 0.184581797558101 0.198855876661663 0.191633812880103 0.185703669344329 0.179234546270257 0.185171122418805 0.192504285829416 0.185942402810412 0.181446816226950 0.189787923367682 0.196770332613675 0.188626703461291 1 1|0 +|/ 5623426 5625401 5624392.667 5622780 5625637 + gene protein_coding_gene FALSE TRUE AT1G16470.1|AT1G16470.2 PAB1 (20S proteasome alpha subunit B1); peptidase Encodes 20S proteasome subunit PAB1 (PAB1). Identical to Proteasome subunit alpha type 2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) (PAB2) [Arabidopsis Thaliana] (GB:Q8L4A7;GB:O64532); Identical to Proteasome subunit alpha type 2-A (EC 3.4.25.1) (20S proteasome alpha subunit B) (Proteasome component 3) (PAB1) [Arabidopsis Thaliana] (GB:O23708;GB:Q94EI0); similar to 20S proteasome alpha subunit B, putative [Arabidopsis thaliana] (TAIR:AT1G79210.3); similar to unknown [Solanum tuberosum] (GB:ABA81880.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.402902960769933 5.21982701147911 0.000686602804022462 1 6.70282309875129 17.3537592314494 0.402902960769933 0.0538222062030461
AT3G24760_at 5.67361722441929 6.81438811529472 6.22339855315977 6.53116460093613 6.83944592542718 6.66412823479384 5.17615596797941 6.09008341341872 3.80376137091387 4.29375770003333 5.16382007386423 4.89162831729288 5.09825637813088 5.36080171651931 4.87978453951608 5.32120814626022 5.30631830218238 5.7158246382968 3.42248533976512 0.280259844953366 0.262309436192811 0.277923934322319 0.279023252182505 0.276158639047927 0.288806062695102 0.275029790424442 0.272022314415934 0.298231332545906 0.276460238810776 0.270180661929642 0.267175134008613 0.266807785027581 0.267806685399356 0.278374752444864 0.262309436192811 0.291805380065213 0.271125579154064 0.264068269249501 3 3 + 9040679 9041233 9040972.909 9040095 9041841 + gene protein_coding_gene FALSE TRUE AT3G24760.1 F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G23390.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 1.00158847103580 5.21827456839781 0.000687952534120971 1 6.7011545211347 10.7801511215513 1.00158847103580 0.260277771737081
AT2G05540_at 11.2250268596662 11.3434603059193 11.6438953146398 11.6430476017039 12.9622685108690 12.8120648182195 11.9536745126617 11.7914894033806 11.2712077148432 11.9540743472565 11.4466330645881 9.28442986270742 11.1795793286891 10.9964535490294 8.91950001733635 6.72867707378332 11.2327479138518 11.0908291507796 11.4804572858803 0.115295878512536 0.118226129237937 0.115521650815886 0.115391612827901 0.122777967127140 0.118193298007479 0.119953518259038 0.117785555923502 0.126880567781173 0.116607653327624 0.118345702524985 0.122406139590182 0.115843487757932 0.114424296473334 0.124376858752833 0.160160155952245 0.120425757403601 0.114914384669792 0.114612576491086 2 2 + 2033279 2033948 2033667.455 2033153 2034214 + gene protein_coding_gene FALSE TRUE AT2G05540.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G05530.1); similar to Glycine rich [Medicago truncatula] (GB:ABE77579.1); contains InterPro domain Glycine rich; (InterPro:IPR010800) -0.385908623306617 -5.21533627624149 0.000690515063742045 1 6.69799524884477 22.7610839297603 -0.385908623306617 0.0433992525202369
AT3G22850_at 6.93144947321712 7.0132301909418 7.15673543192325 6.9320582371599 6.62691679307992 6.83529613102341 6.10883932636425 6.5143067775734 5.36921756443569 6.02166364499654 6.37853882153378 6.20278487282164 5.82761079518521 6.30814289594002 6.21697470001109 6.14480300421732 6.44470988202546 6.95696544350396 5.4179682811206 0.197705991442679 0.189555538001523 0.184125209870247 0.182998983739018 0.184772344911032 0.190499358160263 0.191658717136723 0.197583221934814 0.201834690566475 0.191508993623603 0.19589480416056 0.186831235501425 0.198121124694773 0.187599795043605 0.188797723146725 0.183135188567061 0.19251995152267 0.186657616449771 0.190548007677243 3 3|0 +|/ 8089230 8090235 8089718.875 8089010 8090477 + gene protein_coding_gene FALSE TRUE AT3G22850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43830.1); similar to aluminum-induced protein-like protein [Thellun (GB:AAM19711.1); contains domain ASPARAGINE SYNTHETASE (PTHR11772); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) 0.476455838996508 5.21171034729493 0.000693691617476732 1 6.69409450737041 12.7213621112049 0.476455838996508 0.089084286754323
AT4G05150_at 10.7612214227169 10.6999547467615 10.7824659076384 10.8857444069131 11.5488019452696 11.2075946163048 10.8603580254324 10.6445149111630 10.4021586571388 10.1941083808943 10.8284485564108 10.5640763430156 10.9581699826849 10.8689997517326 10.5435103024729 10.6934616531549 10.9606107212054 10.6763789059253 10.1465165700377 0.0778160124579961 0.0741752541880807 0.0783957273397607 0.077960165118386 0.0782645234314861 0.0743656461488668 0.0789335621715907 0.0774844029907329 0.0860531805406619 0.0786078844877578 0.0761308406017833 0.0786424607670739 0.0776890675566902 0.0806457393705073 0.0756920916502909 0.0741752541880807 0.0820497920326564 0.0787100886993032 0.0788867031587187 4 4 + 2662085 2662463 2662269.091 2660336 2662906 + gene protein_coding_gene FALSE TRUE AT4G05150.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01190.1); similar to Octicosapeptide/Phox/Bem1p [Medicago truncatula] (GB:ABD32345.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.43937596678238 5.21119681507839 0.00069414278959444 1 6.69354186493743 21.4284827793244 0.43937596678238 0.0728950010268507
AT1G72500_at 6.80923353561279 6.71357694463433 6.48363005870449 5.87730009056036 7.13943122219365 6.99206430231001 8.19238502215494 7.98138869373107 7.93076943590144 8.5141897487313 8.07613900724295 8.56157619561407 7.72974170626948 8.08132716600655 8.35542799774184 8.41394774498551 7.43847494002221 8.30641058906659 8.77305346276139 0.152222080991902 0.153581633308012 0.153096197254869 0.170242592807401 0.151330300007407 0.165040883581582 0.147416159772246 0.148032750487193 0.159902001966058 0.153186051268174 0.153726464694789 0.149976067098888 0.160240893598609 0.155631520453969 0.147358201994449 0.152931884040421 0.148937514499762 0.151342249778876 0.152563198155255 1 1 - 27299006 27299563 27299193 27298998 27302218 - gene protein_coding_gene FALSE TRUE AT1G72500.1 inter-alpha-trypsin inhibitor heavy chain-related similar to inter-alpha-trypsin inhibitor heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G19110.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE78212.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) -0.543331589010271 -5.20495061319527 0.000699656124878586 1 6.68681619956905 15.2868186758210 -0.543331589010271 0.115185094968829
AT4G39330_at 10.0874949445284 10.2403542746827 9.21286960668929 9.26392657661136 10.554101460874 10.5852185684518 11.4602344343141 11.6591864803591 11.8115063285817 11.4077511706467 12.3249797908494 12.3713212480136 11.6091115454947 11.6329999823606 12.0432852984533 11.0022560789600 10.7391753464839 11.6811517268619 11.2542204369319 0.0843226025534104 0.0847050760369886 0.0921001279545087 0.0911475063646488 0.0903498100497899 0.0863168567977758 0.08496230855978 0.0886788324341214 0.0883484645317312 0.0847278728288823 0.0851671014520147 0.0856559690305937 0.0875393457241294 0.0866192655897513 0.0884091202876853 0.0843226025534104 0.091931819644602 0.0881963047801845 0.0863201592952332 4 4 + 18291987 18292734 18292412.364 18291212 18293082 + gene protein_coding_gene FALSE TRUE AT4G39330.1|AT4G39330.2 mannitol dehydrogenase, putative|oxidoreductase/ zinc ion binding Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to cinnamyl-alcohol dehydrogenase (GB:AAA74746.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)|Identical to Probable mannitol dehydrogenase (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase) (CAD1) [Arabidopsis Thaliana] (GB:P42734); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21890.1); similar to mannitol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G21730.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:P42734); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.386706332591626 -5.20157855995168 0.00070265232353833 1 6.68318241772112 21.9662705129329 -0.386706332591626 0.0446343439688406
AT1G69420_at 6.38431431456806 6.16170251456875 5.02245981848895 4.94264484126054 5.96459134530514 6.37561703861316 7.13293479633219 6.79590653184837 7.01682449674589 6.79524906481734 7.81889371564339 7.90229007185703 6.84445561421856 7.03996653924493 7.46160193199023 6.46745810138808 6.42261248210787 6.54956756524896 7.2758815013498 0.196371460699425 0.199798700506269 0.19844964097947 0.200559957821267 0.199070026601874 0.196981744880900 0.198317707514574 0.198653721472594 0.202006633222697 0.204738356014648 0.195763015556555 0.193403739609325 0.192292059130684 0.196007183689334 0.190562928647551 0.191177270041107 0.202773008084629 0.190504373468756 0.190802500395117 1 1 + 26099837 26100213 26100058.545 26096859 26100706 + gene protein_coding_gene FALSE TRUE AT1G69420.1|AT1G69420.2 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT4G15080.1); similar to Putative DHHC-type zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAN77310.1); similar to Os10g0337500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064375.1); similar to Os03g0209500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049335.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) -0.504174440002178 -5.19866863762249 0.000705249123342515 1 6.68004500828844 13.1438584536315 -0.504174440002178 0.100678053827742
AT2G41420_at 8.82319184284797 8.94955378313095 9.0814429226696 9.30550790073335 9.36849250729658 9.11219256554986 8.65655257454731 8.85359558171596 9.0611192588302 8.58586023945734 9.4096966031258 9.1679041257297 9.17449509027704 9.33862772377486 9.31793443438709 9.36881379734345 8.81541662941901 9.24731623039518 8.62014246786488 0.0923405422364117 0.0901524718278719 0.0865442752134533 0.0891754353852102 0.0879779285980163 0.0937607866469655 0.0888099429044407 0.087239658731896 0.0923012424626184 0.0903860154297904 0.0903130437544092 0.0894037827028047 0.0868562159192513 0.0863925006435785 0.0867122421638808 0.0877797586514716 0.0953403351136876 0.0859325085395675 0.0925957109995244 2 2|0 -|/ 17274559 17274918 17274692.444 17273555 17275102 - gene protein_coding_gene FALSE TRUE AT2G41420.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G49840.1); similar to XYPPX repeat [Medicago truncatula] (GB:ABE79588.1); contains InterPro domain Molluscan rhodopsin C-terminal tail; (InterPro:IPR006030); contains InterPro domain XYPPX repeat; (InterPro:IPR006031) 0.435251892878757 5.19755842104731 0.000706242624933638 1 6.67884760154707 18.0116826604901 0.435251892878757 0.0714965162201725
AT3G24430_at 10.2291908534814 10.2828314350984 9.64331820726189 9.74592446983621 9.88043277852728 9.5982668422776 10.9474956585085 10.8220559688071 10.6743470167789 10.6346527799738 10.5898512870434 10.8804535570879 10.5011627675255 10.7543067540746 10.7659660002031 10.8438297365226 10.1602395484826 10.6234265132322 10.4919332723347 0.0859706439948436 0.0840891874667974 0.0903634060608991 0.0887536841788792 0.0849273079281187 0.0975518399515458 0.0861879905409826 0.084564992689513 0.0900148167191631 0.084478925065303 0.0860717971299862 0.0856668467464455 0.0840891874667974 0.0884267956198265 0.0846189293982376 0.0862482805280025 0.093221109443516 0.0889653238500233 0.0857935715942474 3 3|0 -|/ 8868738 8869934 8869377.375 8868590 8872208 - gene protein_coding_gene FALSE TRUE AT3G24430.1 HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding encodes a MRP-like protein with a nucleotide-binding domain. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19540.1); similar to Os01g0719700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044086.1); similar to Predicted ATPase, nucleotide-binding (ISS) [Ostreococcus tauri] (GB:CAL57875.1); contains InterPro domain Protein of unknown function DUF59; (InterPro:IPR002744); contains InterPro domain Mrp; (InterPro:IPR000808) -0.406907203502862 -5.19740297319063 0.000706381852322481 1 6.67867992816641 20.7637972985001 -0.406907203502862 0.0570708171455225
AT1G43620_at 7.33875601598308 7.74344509817803 7.60427185758618 7.7158683363471 7.8973012518156 7.8429155360663 7.01320749687291 7.28154788563588 6.54302891460484 6.85070255456436 7.4945925714894 7.1552762081777 7.17732098187188 7.5732520801063 7.01838027675303 6.90806054830164 6.86556168409615 6.80801142765652 6.43249539385465 0.199763922627750 0.197985623678179 0.202749720668142 0.194961351199305 0.197118418448556 0.207408491813784 0.204846060512843 0.196577365779547 0.209447977200307 0.199356739733797 0.197934532099860 0.203954301090336 0.192567295366477 0.201629490200264 0.199162469036105 0.198327192366845 0.225632438256285 0.204471651122858 0.203450327735032 1 1|0 -|/ 16428150 16428884 16428477.7 16427852 16432640 - gene protein_coding_gene FALSE TRUE AT1G43620.1|AT1G43620.2|AT1G43620.3 UDP-glucose:sterol glucosyltransferase, putative similar to UDP-glucose:sterol glucosyltransferase (UGT80A2) [Arabidopsis thaliana] (TAIR:AT3G07020.1); similar to Os01g0867600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044914.1); similar to sterol glucosyltransferase [Withania somnifera] (GB:ABC96116.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Glycosyl transferase, family 28; (InterPro:IPR004276) 0.468582402959139 5.18703698330723 0.000715733912369762 1 6.66748896639021 14.4215638148012 0.468582402959139 0.0867332637680947
AT4G24620_at 9.89450281643282 9.7708305008857 9.32917494517754 9.3478802307689 9.3269453054908 9.53454908238515 10.4747215125782 10.4708965467954 10.0327782269729 10.0566191861501 10.0178961579661 10.1324473963882 9.83558534515589 10.0543575722508 10.1809251605691 9.98509901134945 9.90304213429002 10.0664848786737 9.9618255020354 0.0943545436368833 0.0942088920662974 0.102962016000955 0.0980486528557186 0.0956128432049575 0.102470221912199 0.0946987704157806 0.0955949436784654 0.101376989135871 0.100594539493338 0.0940161282941752 0.0929828678969614 0.0941681024755337 0.102528143173542 0.0929828678969614 0.0929828678969614 0.100726735149800 0.0998960055645827 0.0947352592228935 4 0|4 /|- 12708991 12709817 12709362.875 12708762 12712835 - gene protein_coding_gene FALSE TRUE AT4G24620.1|AT4G24620.2 PGI1 (CHLOROPLASTIC PHOSPHOGLUCOSE ISOMERASE) The PGI1 gene encodes the plastid phospho-glucose (Glc) isomerase. While pgi1-1 mutant has a deficiency in leaf starch synthesis, it accumulates starch in root cap cells. Flowering time of the pgi1-1 mutant is significantly delayed under short-day conditions. similar to glucose-6-phosphate isomerase, cytosolic (PGIC) [Arabidopsis thaliana] (TAIR:AT5G42740.1); similar to glucose-6-phosphate isomerase [Lycopersicon esculentum] (GB:AAU00727.1); similar to glucose-6-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAD08451.1); similar to glucose-6-phosphate isomerase [Spinacia oleracea] (GB:CAA03982.1); contains InterPro domain Phosphoglucose isomerase (PGI); (InterPro:IPR001672) -0.381597525594914 -5.185065050828 0.000717528165551554 1 6.66535793049907 19.7882146236309 -0.381597525594914 0.0419487817254453
AT1G72180_at 9.17669204575808 9.39637418684318 9.2524051328804 9.26832500880199 9.6500841139611 9.5382050363121 9.26318630209113 9.21090109410582 9.48391580644324 9.35478982202442 10.562270658351 9.9194761036221 10.2691268155841 10.0745273164180 9.98051169389677 9.87134920314602 9.51914527968892 9.84848858488936 9.37006514377527 0.098647225771394 0.0926021310123209 0.0930500449113291 0.0921130738936668 0.0945530777316325 0.102121573785430 0.0926067845424476 0.0958186928537834 0.108574738784679 0.0946845764852648 0.0961818887399585 0.096905564310485 0.095789218096327 0.0986445402103266 0.0921130738936668 0.0963520211781499 0.0969356323492079 0.101032469035648 0.0966232097150242 1 1|0 +|/ 27170247 27170798 27170550.1 27166482 27171092 + gene protein_coding_gene FALSE TRUE AT1G72180.1 leucine-rich repeat transmembrane protein kinase, putative similar to HSL1 (HAESA-LIKE 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G28440.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28309.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28308.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28307.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.38407739099562 5.18470323613396 0.00071785791014391 1 6.6649668478742 19.0487893889428 0.38407739099562 0.0436990804970243
AT1G70410_at 11.0027372497208 10.9686011372090 10.6370614858066 10.5668516173523 11.1451757770096 10.9175661388160 11.9786960527915 11.9465775688182 11.8662679486689 11.7961576323298 11.7483711438068 11.7335866537852 11.6946992393889 11.859796972455 11.7888023488379 11.8335074503784 11.4151376433562 11.7411779555855 11.8353994277776 0.0749643718788857 0.0694371828959458 0.0712049707044843 0.0712081104196309 0.072634967731305 0.0741223619017913 0.0723183452680051 0.0728876668492803 0.0753507808333339 0.071168257446921 0.0701682578436852 0.070492414359189 0.0695567639138323 0.072597717784551 0.0710772857461466 0.0701685784654494 0.0757375325532226 0.0728823161298231 0.0717536016513608 1 1|0 -|/ 26537848 26539326 26538381.444 26537589 26541996 - gene protein_coding_gene FALSE TRUE AT1G70410.1|AT1G70410.2|AT1G70410.3 carbonic anhydrase, putative / carbonate dehydratase, putative similar to carbonic anhydrase, putative / carbonate dehydratase, putative [Arabidopsis thaliana] (TAIR:AT1G23730.1); similar to carbonic anhydrase [Solanum lycopersicum] (GB:CAH60890.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.381606328849154 -5.1839988738007 0.000718500312926059 1 6.66420544128102 22.9251550095445 -0.381606328849154 0.0420107596738958
AT4G30950_at 11.5665689541006 11.6348501180358 11.2408096200751 11.2139949485365 11.3111431742346 11.2601246214795 12.1532606247164 12.2225780160258 12.5444846578052 12.3017463044729 12.4260634819190 12.3376786633487 12.1834652223646 12.3427980223892 12.4120614244148 12.3528087633192 12.1518982452690 12.2728079937788 12.3160023407697 0.059937148560128 0.0580405948148415 0.0595825198292668 0.0568922667854958 0.0576649970581598 0.0635516489394732 0.0600565595733574 0.0578635784450794 0.06302754948015 0.0586967126829252 0.0561428333979724 0.0559374604316147 0.0577423888419773 0.0592778402527868 0.0571511119483879 0.0561659985813667 0.0621978288785891 0.0581472030946746 0.0571253714087764 4 0|4 /|- 15057284 15058003 15057633.7 15056981 15059800 - gene protein_coding_gene FALSE TRUE AT4G30950.1 FAD6 (FATTY ACID DESATURASE 6); omega-6 fatty acid desaturase Chloroplastic enzyme responsible for the synthesis of 16:2 and 18:2 fatty acids from galactolipids, sulpholipids and phosphatidylglycerol. Uses ferredoxin as electron donor. Gene mutation resulted in reduced level of unsaturated fatty acids leading to susceptibility to photoinhibition. Identical to Omega-6 fatty acid desaturase, chloroplast precursor (EC 1.14.19.-) (FAD6) [Arabidopsis Thaliana] (GB:P46312;GB:Q9M094); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to omega-6 fatty acid desaturase [Descurainia sophia] (GB:ABI73993.1); similar to Omega-6 fatty acid desaturase, chloroplast precursor (GB:P48627); similar to chloroplast omega-6 fatty acid desaturase (GB:AAA92800.1); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261) -0.357629855526898 -5.18321909100766 0.000719212231186043 1 6.66336240296487 23.9240956737087 -0.357629855526898 0.0195705907353271
AT1G03290_at 8.96452288859303 9.16515751538443 9.35224852242845 9.5188495205886 8.80483633210377 8.78064428644856 7.63042533351748 7.79120162227066 7.73796392163562 7.26773906461416 7.52929914702865 7.39146407478405 7.21624702175895 7.95796803486859 6.97073111963009 8.07817799454246 8.02669129083938 7.83177199310411 7.65633298432363 0.159758935446559 0.167525010433330 0.158889800303758 0.154995233324276 0.154063733205228 0.164125709326218 0.164305812923896 0.158359947424225 0.160299001608326 0.158851087986577 0.159330228812249 0.154611904890385 0.162273208741006 0.154063733205228 0.167617470789753 0.158109392316355 0.168423786293986 0.154788511999837 0.161030511256163 1 1 + 809729 810574 810266.273 807396 810690 + gene protein_coding_gene FALSE TRUE AT1G03290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02880.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77463.1); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.398799834914674 5.18085469159199 0.000721375551188079 1 6.66080554201378 16.3406386650472 0.398799834914674 0.0531828309194713
AT1G74470_at 13.3780887118565 13.4907528698137 12.8313898526018 12.9921471534320 13.1913334685049 13.0158693905037 13.7598064767730 13.8931385301427 14.1471888847356 13.9907117150941 13.8393379873933 13.9859226845837 13.7890975400368 13.8818657684930 13.9307010853423 13.7941844930094 13.4055772508029 14.0618408856278 13.8732723589748 0.060313444821076 0.0594910995437164 0.0633352073172462 0.0597021159442645 0.0605067311615836 0.0623942207559524 0.0594910995437164 0.0608213504032945 0.0615426263669917 0.0598300612769311 0.0598845156947584 0.0598822380296333 0.0594910995437164 0.0601183031714425 0.0604577190924739 0.0594910995437164 0.0670234007314689 0.0594910995437164 0.0597654151379168 1 1 + 27995824 27996388 27996025.818 27994826 27996667 + gene protein_coding_gene FALSE TRUE AT1G74470.1 geranylgeranyl reductase Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate. similar to geranylgeranyl hydrogenase [Lotus corniculatus var. japonicus] (GB:AAY52460.1); similar to geranylgeranyl reductase [Medicago truncatula] (GB:AAX63898.1); similar to geranylgeranyl reductase [Brassica rapa subsp. pekinensis] (GB:ABI63587.1); contains InterPro domain Geranylgeranyl reductase, plants and cyanobacteria; (InterPro:IPR011774); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Geranylgeranyl reductase, plantal and prokaryotic; (InterPro:IPR011777); contains InterPro domain Geranylgeranyl reductase; (InterPro:IPR010253); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.395210019288106 -5.18020373287423 0.000721972391192786 1 6.66010142038586 27.2389609474599 -0.395210019288106 0.0510734717890332
AT2G38640_at 6.09393489909599 6.3512711813618 7.23690457818034 7.15640961486538 7.90625733035001 7.12458029300086 8.69627964074531 8.72893275453502 5.64964100537379 6.61739611181356 7.4923668331348 7.51799078835889 7.67010012412993 7.85185749331633 6.76754230937671 7.73660539711242 7.4476356992551 7.44441303893782 6.15003012974602 0.229780876898806 0.229071138215623 0.225823686508619 0.237965604587567 0.231108471098789 0.225510735128016 0.228874002518671 0.224640498655798 0.25596549393365 0.229750576366439 0.232346869550558 0.224368821077975 0.225355275777396 0.240733772404533 0.246974179523666 0.223831050523577 0.254085422169175 0.227945353268181 0.226614786089185 2 2|0 -|/ 16164816 16165518 16165272.3 16164682 16165634 - gene protein_coding_gene FALSE TRUE AT2G38640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41590.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16698.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.620237439986456 5.17857619521806 0.000723466971828973 1 6.65834063324254 14.2268644745654 0.620237439986456 0.143205909674767
AT3G06930_at 4.46524849856667 4.20654382642963 4.78105452505706 4.61385369919054 5.46133920485836 5.68948292963297 4.88714786432835 4.72250897592877 4.32242431690876 4.29909803580058 4.36608555626411 4.48600874165266 4.16774757003009 4.51802320209107 5.15702346104398 4.44953180373498 4.61623114798793 5.13036342217854 4.30058345808857 0.230753798205548 0.228720256907032 0.232147508163504 0.222039769485694 0.227628839051120 0.227856911676092 0.223963948131737 0.231617936815346 0.227101708148163 0.221229295361730 0.222125225782006 0.222178099874440 0.221983973837859 0.222581114984746 0.220902703612914 0.219773706262247 0.232750263183184 0.219773706262247 0.224888931903395 3 3 - 2185483 2186424 2185929.182 2185149 2189390 - gene protein_coding_gene FALSE TRUE AT3G06930.1|AT3G06930.2 protein arginine N-methyltransferase family protein similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G49020.1); similar to Os07g0671700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060600.1); similar to ar (GB:CAL25348.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.435039278947501 5.17740336755704 0.000724546074873052 1 6.6570714911145 9.31277017386015 0.435039278947501 0.0721950678258902
AT1G66900_at 9.06977687447583 9.25534882364587 9.30047674593821 9.5568913393329 9.65647725163802 9.58396816695402 9.5131384052830 9.42548706325272 8.5114486779478 8.3019741214372 8.78640701072168 8.89208763874002 8.83418028073009 9.0006128487046 8.73025168097447 9.27712997512186 9.3641356692628 8.9034971778052 8.28953241533063 0.136695609873848 0.131762950873692 0.141951239045924 0.13222654770182 0.133194404286124 0.136318952457805 0.135462571669542 0.134735983750479 0.148633632418664 0.138546104070044 0.138525910480117 0.131762950873692 0.137233877829104 0.142644638013925 0.134931181636935 0.131762950873692 0.133220319564391 0.140030388958373 0.139016979232971 1 1|0 +|/ 24963420 24964822 24964238.2 24962997 24965279 + gene protein_coding_gene FALSE TRUE AT1G66900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38220.3); similar to Os01g0689800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043924.1); similar to C (GB:BAD82560.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.407200815660241 5.17492385992149 0.000726833203972399 1 6.6543875546102 18.0907903455631 0.407200815660241 0.058205494156
AT1G18720_at 10.1432936763880 10.4688209842315 10.8421274774321 10.9085778225574 10.8589026566500 10.6845640825843 10.1228529224102 10.3246272969814 9.83018174887486 9.77078386368827 9.93669217074865 9.89685392917028 10.1537711520811 10.1182658167764 9.82014682444472 10.1636476172041 10.0805983690004 10.2811166115764 9.61737087513408 0.114713996375022 0.106759410867745 0.111079326080546 0.108736798860099 0.108153837569393 0.113211980618794 0.107885335346486 0.108658250850433 0.116495754595356 0.114553859100376 0.106970636360527 0.107096814290621 0.110818034966538 0.108431603174272 0.107909175355554 0.109399197758059 0.116119116158599 0.112801857015254 0.110377517222024 1 1|0 -|/ 6458086 6459603 6459178.778 6457813 6459743 - gene protein_coding_gene FALSE TRUE AT1G18720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74440.1); similar to YGL010w-like protein [Picea mariana] (GB:AAC32136.1); contains InterPro domain Protein of unknown function DUF962; (InterPro:IPR009305) 0.437792677639679 5.17140055062139 0.000730096665966185 1 6.6505718709326 20.4421368935415 0.437792677639679 0.0737242345765891
AT4G16190_at 13.0816723318801 13.2160694462227 13.4635931286342 13.4702587007580 13.4169629134343 13.4739160866677 12.8366729302799 12.8888493881394 11.7899685354757 12.3478159612804 12.1752951967619 11.7379219533849 12.7013022848779 12.5305871661669 11.9078833357996 12.3440538707891 13.0714891925030 12.5326741708285 12.1642429445625 0.0751864354697632 0.0757249586168816 0.0734757606391111 0.0780609999919639 0.0803050016706945 0.081007475794486 0.0754034626450765 0.0777664359908764 0.0934552600446288 0.0738051529654605 0.0790846593885709 0.0753636358647845 0.0734757606391111 0.0742450103157256 0.0825044021572307 0.0734757606391111 0.0770019705218136 0.0806681571589601 0.0734757606391111 4 4|0 +|/ 9172167 9172857 9172456.1 9171482 9173120 + gene protein_coding_gene FALSE TRUE AT4G16190.1 cysteine proteinase, putative similar to RD19 (RESPONSIVE TO DEHYDRATION 19), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G39090.1); similar to papain-like cysteine proteinase isoform I [Ipomoea batatas] (GB:AAF61440.1); similar to papain-like cysteine proteinase isoform I [Ipomoea batatas] (GB:AAF40414.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.362420882929549 5.16606364435746 0.000735070361674018 1 6.64478787320619 25.4689127208329 0.362420882929549 0.0268502890392252
AT4G40040_at 11.6395401450412 11.7201476747781 11.7621700166789 11.9173444757914 12.1633133963775 12.1676563936084 11.4495440632834 11.7858524719926 11.7513286836151 11.4570736714076 12.0749823736111 12.0638233258882 12.2360695370204 12.056339879965 12.1112064694624 12.0625612524996 12.0530690821844 11.8977209465859 11.5388649863387 0.0622575393716748 0.060880390271816 0.0650914999777931 0.0623253859539494 0.0636931167904357 0.0649196560266426 0.0607492097329708 0.0619700501775017 0.0640323979298526 0.0627594750429208 0.0603696495802782 0.0614177358658012 0.0605765577529177 0.061605734878487 0.0623558936051955 0.0603696495802782 0.0663683613035584 0.061198095580982 0.063050492903365 4 4|0 -|/ 18557544 18558164 18557817.2 18557181 18558737 - gene protein_coding_gene FALSE TRUE AT4G40040.1|AT4G40040.2 histone H3.2|DNA binding Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to histone H3.2 [Arabidopsis thaliana] (TAIR:AT4G40030.3); similar to disease-resistent-related protein [Oryza sativa] (GB:AAL78367.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.420449571560930 5.16453750532217 0.000736499403578502 1 6.64313294925918 23.6516431074552 0.420449571560930 0.0656009337032775
AT4G17350_at 5.87626091057116 5.98961754881586 5.72258671138392 5.48622190263067 5.69822040336003 5.03634911590843 6.63763947067843 6.57139286628878 6.54410094293427 6.63957036341718 6.46789973066644 6.19311703317915 6.53024704186426 6.42752843423161 5.23944627659933 6.3379060672824 5.76111973258322 6.06292325525807 6.22492905689475 0.190212574188906 0.193922745759884 0.191417474664857 0.199542820459114 0.195881456145399 0.206566771984257 0.202087233862799 0.204573180978384 0.196258653848328 0.194272943206297 0.188471508487024 0.188824447042759 0.188770918833583 0.202695404009407 0.212599175306980 0.185952141412260 0.198199402420803 0.190265455168534 0.188545022352243 4 4|0 +|/ 9702585 9703335 9702997.5 9701144 9703586 + gene protein_coding_gene FALSE TRUE AT4G17350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47440.1); similar to hypothetical protein 40.t00010 [Brassica oleracea] (GB:ABD65135.1); similar to hypothetical protein 31.t00035 [Brassica oleracea] (GB:ABD65121.1); contains InterPro domain Pleckstrin-like, plant; (InterPro:IPR013666); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Protein of unknown function DUF828, plant; (InterPro:IPR008546) -0.562446586862568 -5.16270778351553 0.000738216697329901 1 6.64114827621322 12.1758145666414 -0.562446586862568 0.123728670678342
AT2G34480_at 10.8213391596283 11.0247441284066 10.1482896438541 10.4112617437815 10.2607715031516 10.1799006055102 10.7419818512575 11.1613271386742 10.7305089059309 10.6439145435838 10.5775689848558 10.6801852308878 10.4445533417570 10.3459821887534 10.9538659284459 10.2115263312786 9.8299106576138 10.0860932128209 10.635331476617 0.0827598049085148 0.079814499035717 0.0833268782141208 0.0805852101668304 0.081326355680323 0.0842451881138509 0.0821303540408692 0.0788539484016166 0.091265788142324 0.0794248536878872 0.078670956156724 0.0796004155058824 0.078670956156724 0.087594872886875 0.0808981053864297 0.081278786687795 0.090801860143399 0.0861119430699098 0.078670956156724 2 0|2 /|- 14540057 14541079 14540475.4 14539787 14541318 - gene protein_coding_gene FALSE TRUE AT2G34480.1 60S ribosomal protein L18A (RPL18aB) Identical to 60S ribosomal protein L18a-2 (RPL18AB) [Arabidopsis Thaliana] (GB:P51418;GB:O64699); similar to 60S ribosomal protein L18A (RPL18aC) [Arabidopsis thaliana] (TAIR:AT3G14600.1); similar to unknown [Solanum tuberosum] (GB:ABA46783.1); contains InterPro domain Ribosomal L18ae protein; (InterPro:IPR002670) -0.482999884788091 -5.16173742838693 0.000739129195185763 1 6.6400955033138 21.1242664934141 -0.482999884788091 0.0936605476925269
AT1G76460_at 5.1774278065323 5.87456137200832 5.91310150587048 5.98517870876113 7.18385833221039 7.68223258357235 5.44183239711251 6.21676083121302 5.91658985387247 6.16341729500165 6.75735766054993 6.63327327341701 7.18175194010459 6.95740762027223 5.91165854191503 6.96752474407442 6.52851356756696 7.0759058155636 6.45087041204611 0.203781538134330 0.194983698581462 0.194386033913621 0.202232813221989 0.201218602694423 0.199684566636496 0.207857941544227 0.196868442696861 0.197851044147133 0.204745490492213 0.201093035511930 0.194386033913621 0.201105428952716 0.205803337597083 0.202417264500589 0.197726445028792 0.206849704065329 0.201470895517996 0.195396971848463 1 1|0 -|/ 28691942 28692662 28692286.3 28691075 28694015 - gene protein_coding_gene FALSE TRUE AT1G76460.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G20880.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.794081069673308 5.1591171142933 0.000741599407369778 1 6.63725179094044 12.6486858583632 0.794081069673308 0.200331333568675
AT1G14340_at 6.69138951274426 6.36551517698624 7.34628006594558 7.31314403259717 7.4302736495006 7.53873064940134 6.35944721063338 6.4750199105235 6.24942051835803 6.65033083832309 6.55967986213564 5.89737509787123 6.32239384383336 6.41459003108296 5.6393172049085 6.81814195980686 6.76120280511765 6.15982587315422 6.38003246001568 0.176843479710779 0.179094011498814 0.179466136740835 0.17750055715256 0.18254457939281 0.187319936591345 0.181164900619469 0.190888358529618 0.194869089840488 0.181258221350852 0.17446476889306 0.176723862086194 0.17940843824206 0.193154351906840 0.17446476889306 0.177549277664314 0.183964914722757 0.189696520734072 0.178681161910199 1 0|1 /|+ 4898137 4898729 4898556.222 4897341 4898956 + gene protein_coding_gene FALSE TRUE AT1G14340.1 RNA recognition motif (RRM)-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G01210.1); similar to hypothetical protein [Solanum demissum] (GB:AAT40482.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.414617687906264 5.15590072080446 0.000744643833502696 1 6.6337595030933 13.3140552461937 0.414617687906264 0.0629719383144514
AT3G62290_at 11.8974670453110 12.0931657098977 11.9439151704420 12.073889990495 12.4122147998361 12.3848136719461 11.1884703229297 11.3879755335170 11.8290804195878 11.8624464262652 12.4290190954676 12.1677313272531 12.5104571443779 12.2060252911915 11.9791646658209 12.2736561221813 12.1409804454467 11.8883356794250 12.2082380468856 0.0703132403552812 0.0666930121199423 0.0675905167335141 0.0669630810291318 0.0695457407787633 0.0716314986191431 0.0682478247620293 0.070549483968679 0.0735281958658666 0.0681890122996437 0.0666930121199423 0.0666930121199423 0.0708216640052012 0.071638688204172 0.0728634473777934 0.0671603702354903 0.0717279627976415 0.0700308798511912 0.0673652099440391 3 3 + 23063262 23064406 23063844.545 23062625 23064732 + gene protein_coding_gene FALSE TRUE AT3G62290.1 ATARFA1E (ADP-ribosylation factor A1E); GTP binding / phospholipase activator/ protein binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.397385839540937 5.15442623898963 0.000746044021693257 1 6.63215792604361 24.0057437900343 0.397385839540937 0.0535476466750896
AT3G22240_at 7.45996742880321 6.97037677322393 7.56782137423912 7.44080165824328 6.87766874964123 7.12148649521438 5.70022928903931 6.13514435777105 6.70103666990691 6.50320207830324 6.77321615552616 7.53394378114127 7.08711334360695 7.15943869440236 6.75333652849806 7.04394109558837 6.73805550564741 7.22897031794258 6.6181542319454 0.237653999038047 0.244435743629449 0.238233624219796 0.248452925209891 0.239264972319677 0.23211537995695 0.23211537995695 0.233757692830154 0.251152971087581 0.245726227515888 0.23211537995695 0.247569626028502 0.23211537995695 0.23211537995695 0.232833640460170 0.244501445413815 0.23211537995695 0.239154648391484 0.245057484546916 3 3|0 -|/ 7864446 7864483 7864463.667 7863684 7864586 - gene protein_coding_gene FALSE TRUE AT3G22240.1 unknown protein 0.558901354100377 5.15109621156464 0.000749216807007852 1 6.62853943246362 13.7327951430283 0.558901354100377 0.122909171304039
AT1G07230_at 7.94815270818797 8.32036646989795 8.07925477270102 8.45867029380185 8.64484986563183 8.5331804769195 7.58668010584338 7.86433798740158 6.72445732369606 7.25390828015772 7.4637082614656 7.58114899569284 7.66435982628696 7.68975658703476 7.38667943248815 7.77707775968151 8.0581694241064 7.7347901513562 7.4561324565387 0.175514805536898 0.166577982077269 0.174071580561718 0.165406348456528 0.167233579434691 0.18023888146857 0.167297701169885 0.161321899420414 0.214145841940000 0.184161773310833 0.16350423661045 0.162744913402034 0.171051391674858 0.161356253774830 0.171989569223098 0.165317438084015 0.174937879958109 0.178906047448852 0.171355657106238 1 1|0 -|/ 2220557 2221745 2221041.8 2220252 2222981 - gene protein_coding_gene FALSE TRUE AT1G07230.1 phosphoesterase family protein similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT2G26870.1); similar to Os03g0826600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051765.1); similar to putative phospholipase [Oryza sativa] (GB:AAK82449.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) 0.511866576198695 5.14843119074888 0.00075176655689766 1 6.6256421246437 15.5865835808289 0.511866576198695 0.105558121044595
AT1G49740_at 4.13996518093155 4.41564869267462 4.26804118031036 4.21426178355967 4.787103986873 4.75449185617487 6.02689009000237 5.99172185640788 5.24191864891852 5.50810947137791 5.39530088487522 5.13204345495482 5.01756505301688 5.67394618338365 5.3669225887466 5.85295487924193 4.89411128083832 5.07379789843013 5.57769203376062 0.211644917367733 0.197362750986755 0.202067998856029 0.203507899835968 0.205178734965660 0.203343062349405 0.197362750986755 0.201959710101413 0.199431393520374 0.209104400360631 0.197362750986755 0.204614310768637 0.201076768595805 0.205490009939436 0.197362750986755 0.20389707911198 0.21043152860445 0.197362750986755 0.197780739139861 1 1|0 +|/ 18412363 18413004 18412665.7 18411186 18413690 + gene protein_coding_gene FALSE TRUE AT1G49740.1 phospholipase C similar to phospholipase C [Arabidopsis thaliana] (TAIR:AT3G19310.1); similar to Os04g0430200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052817.1); similar to B0222C05.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66396.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909) -0.389662430012186 -5.14485953578674 0.00075519853280745 1 6.62175716842915 10.1964674096776 -0.389662430012186 0.0493111598274259
AT1G18080_at 10.8398371266009 10.9378940267811 10.4596733361740 10.3487152014361 10.3812620682069 10.2877963166229 11.0106118696008 11.1279560673082 10.4831689546021 10.5052077397759 10.3378981070676 10.6647529843940 10.4256073998058 9.92275332672719 10.9491411081907 10.0365166494981 10.1350682209416 10.1917636931237 10.4095816590113 0.0647719371773711 0.0629751016999024 0.0629889784515629 0.0650720186096224 0.0648947250641785 0.0640280200951314 0.0633707669087858 0.0653978698213682 0.0728335808860401 0.0661072920825585 0.0645940778678906 0.0629751016999024 0.0645443711457161 0.0790867434572355 0.0651641096250421 0.0643911314262577 0.0663008215459369 0.063848808415196 0.0642370682938305 1 1 + 6222781 6223165 6222919.455 6222194 6224144 + gene protein_coding_gene FALSE TRUE AT1G18080.1 ATARCA (Arabidopsis thaliana Homolog of the Tobacco ArcA); nucleotide binding Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. Identical to Guanine nucleotide-binding protein subunit beta-like protein (WD-40 repeat auxin-dependent protein ARCA) (ARCA) [Arabidopsis Thaliana] (GB:O24456;GB:Q9LDI1); similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to Guanine nucleotide-binding protein subunit beta-like protein (GB:Q39336); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.371380736770345 -5.14420429722097 0.000755829993850115 1 6.62104420557244 21.0736801535989 -0.371380736770345 0.0364781707023217
AT2G23320_at 8.12953519685885 8.06060024040167 8.21762961317407 8.6409220827785 8.67247903562583 7.67948061229775 5.76214457666402 5.96068375155356 7.53913056902673 7.04913681571507 7.88709749920982 7.92830433660203 7.38917850757515 7.61664044343446 7.68955779845278 7.70008968119303 6.82501969118856 7.11213811296564 7.3814934802861 0.229660216553817 0.226246534388809 0.252636015332519 0.233642107935722 0.231203928357976 0.253356748264876 0.234389746476094 0.243344379462976 0.247192540098027 0.243871425557249 0.231554979651119 0.233797904546164 0.238285472378968 0.240913948828558 0.233953993978142 0.227947693018087 0.239337713614393 0.239182833228148 0.237185349122501 2 2 + 9932446 9933200 9932808.727 9932013 9933452 + gene protein_coding_gene FALSE TRUE AT2G23320.1|AT2G23320.2 WRKY15 (WRKY DNA-binding protein 15); transcription factor Encodes WRKY DNA-binding protein 15 (WRKY15). Identical to Probable WRKY transcription factor 15 (WRKY DNA-binding protein 15) (WRKY15) [Arabidopsis Thaliana] (GB:O22176); similar to WRKY7 (WRKY DNA-binding protein 7), transcription factor [Arabidopsis thaliana] (TAIR:AT4G24240.1); similar to WRKY transcription factor NtEIG-D48 [Nicotiana tabacum] (GB:BAB16432.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.759818265875617 5.14297314618124 0.000757018021699112 1 6.61970438670025 15.0613128289211 0.759818265875617 0.190312315141191
AT4G36520_at 6.32389346562433 6.12386075731134 5.75742524665999 5.72650771288556 4.76252213227608 4.54096168133587 5.52832830393544 4.668878965412 5.24122759694377 5.9525880168866 4.48569972600299 4.74240307698016 4.39509305269009 4.935441509028 4.91812095622865 5.73893239995733 5.22850329534478 4.74961984031088 6.06171396557668 0.27504314849231 0.268570826059076 0.260519417909366 0.260519417909366 0.260519417909366 0.260519417909366 0.260519417909366 0.278940668124808 0.271344714557103 0.275842109240675 0.265876821285815 0.260519417909366 0.270314666773148 0.273004482863877 0.262933817045838 0.260519417909366 0.298728465448012 0.281855078401376 0.272566407202612 4 4|0 -|/ 17230869 17231510 17231111.75 17230592 17235521 - gene protein_coding_gene FALSE TRUE AT4G36520.1 trichohyalin-related similar to AUL1 (auxin-like 1 protein), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G75310.1); similar to 10A19I.11 [Oryza sativa (japonica cultivar-group)] (GB:AAD39596.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.658501320424612 -5.14242308564831 0.000757549471477981 1 6.61910568735679 10.7545822457818 -0.658501320424612 0.157537847120901
AT3G13070_at 8.10501664838835 8.11450966932858 7.67596341619888 7.52260215774116 7.5388626321255 7.53116755812721 7.7367220262321 7.65969640254243 8.36634847524968 8.65428670850317 8.46065860689813 8.49705785035086 7.64589871854306 8.28852130578807 8.05030349956355 8.43078323461705 7.70211360060234 7.90406037779017 8.51721228964539 0.153228668298414 0.153663282730814 0.157783106436952 0.153890627952555 0.160538596389221 0.159962702977783 0.155178761397114 0.152188599937105 0.163761621226596 0.151143798476782 0.150801557579557 0.15040503057787 0.151651421617880 0.155042271692992 0.147955328801320 0.155647316194800 0.160476497978642 0.161419926773134 0.148696223479234 3 3|0 -|/ 4191535 4192170 4191745.5 4191358 4195119 - gene protein_coding_gene FALSE TRUE AT3G13070.1 CBS domain-containing protein / transporter associated domain-containing protein similar to CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55930.1); similar to Os03g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050588.1); similar to transporter associated domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT81753.1); similar to CBS domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97418.1); contains InterPro domain Transporter-associated region; (InterPro:IPR005170); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.363514210385802 -5.14063029310497 0.000759284424174571 1 6.6171539925622 16.0530878007031 -0.363514210385802 0.0297744328055974
AT1G67920_at 7.52027569347209 7.82112806184302 7.95875689778549 8.18721443512836 6.70897530734453 7.46315999315436 3.80526481633222 4.23678787114654 3.67919795985495 3.6283418933938 2.98948544515539 3.08576842707951 3.45053189971985 3.54533394972864 3.01299601820231 3.01777537843773 3.84488897953878 3.76397148532512 3.84362502413895 0.354869819351043 0.361267608759913 0.360082952668821 0.359824703733683 0.356110363636915 0.375347117844127 0.329071016270462 0.329071016270462 0.329071016270462 0.329071016270462 0.332736447599622 0.333453376105932 0.329071016270462 0.32925750321148 0.343628696362182 0.329078294145963 0.329071016270462 0.331710325069403 0.329071016270462 1 1 + 25477404 25477573 25477504.545 25477207 25477803 + gene protein_coding_gene FALSE TRUE AT1G67920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24600.1) 0.67772576821195 5.14054454818333 0.000759367510935459 1 6.61706063332943 10.2406448380396 0.67772576821195 0.163965223798717
AT4G39210_at 6.68412329183764 6.86460416733946 6.34214999946027 6.48703901500186 6.28979822473337 5.7504095671478 7.17369705710672 6.93165036640612 5.72847526657188 6.18459293873833 5.13378656300238 5.26607035939024 5.36116391464083 5.74943899892131 5.16300412021147 5.68511080338407 5.30738215954364 5.19221261011301 5.20190828829863 0.221335814023277 0.212671492718008 0.214484703418907 0.224634822779527 0.222224858817045 0.236981733132177 0.235349851542338 0.220680883933957 0.224009207617941 0.218577879849984 0.219402542368052 0.210020680976618 0.212164946866993 0.210322997469390 0.216324705835517 0.212936608007618 0.216669415703714 0.212984544839462 0.211383185080759 4 4|0 +|/ 18261984 18263117 18262560.556 18259603 18263411 + gene protein_coding_gene FALSE TRUE AT4G39210.1 APL3 (large subunit of AGP 3) Encodes the large subunit of ADP-Glucose Pyrophosphorylase which catalyzes the first, rate limiting step in starch biosynthesis. The large subunit plays a regulatory role whereas the small subunit (ApS) is the catalytic isoform. Four isoforms (ApL1-4) have been identified. ApL3 is the major large subunit isoform present in inflorescences, fruits and roots. Identical to Glucose-1-phosphate adenylyltransferase large subunit 3, chloroplast precursor (EC 2.7.7.27) (ADP-glucose synthase) (ADP-glucose pyrophosphorylase) (AGPase S) (Alpha-D-glucose-1-phosphate adenyl transferase) (APL3) [Arabidopsis Thaliana] (GB:P55231;GB:Q9ZR38); similar to APL4 (large subunit of AGP 4), glucose-1-phosphate adenylyltransferase [Arabidopsis thaliana] (TAIR:AT2G21590.2); similar to APL2 (large subunit of AGP 2) [Arabidopsis thaliana] (TAIR:AT1G27680.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum habrochaites] (GB:ABC26923.1); similar to ADPglucose pyrophosphorylase large subunit [Solanum lycopersicum] (GB:ABC26921.1); similar to ADP-glucose pyrophosphorylase large subunit [Lycopersicon hirsutum] (GB:AAD56405.1); contains InterPro domain Glucose-1-phosphate adenylyltransferase; (InterPro:IPR011831); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain ADP-glucose pyrophosphorylase; (InterPro:IPR005836); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.521945246236034 -5.13608805120171 0.000763699490742716 1 6.6122065808757 12.0965656389727 -0.521945246236034 0.109871709315795
AT4G24690_at 11.1498410082264 11.2649032953066 11.6101375009290 11.6411161142381 11.5109563756462 11.4548759577712 10.2093419523372 10.6588405839524 10.6946196475986 10.3848748255592 10.6782649684876 10.4044981519031 10.7889592909906 10.7755027142774 10.2524971480124 10.7236342646843 10.7224584808651 10.7582295942862 10.3329562645392 0.0854162837353462 0.0854287642166336 0.0873618947846837 0.091163513483255 0.0887158404732487 0.089218915594357 0.0867810454230734 0.0857312915576015 0.0898329213621335 0.0892563387073802 0.0833765406423652 0.0865329546783648 0.0845742414000915 0.0893060103325065 0.0874620399619682 0.0832826584619672 0.0934438116049308 0.086910692122146 0.0878252629573545 4 4|0 +|/ 12743535 12744172 12743770.8 12741043 12744543 + gene protein_coding_gene FALSE TRUE AT4G24690.1 ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein similar to Os04g0476800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053083.1); similar to Os02g0593700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047302.1); similar to PFE18 protein [Ananas comosus] (GB:AAM28274.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.450364220656554 5.12994683075028 0.000769713202772654 1 6.60551169289334 21.7419128431779 0.450364220656554 0.0810577843504598
AT2G13440_at 6.50065269118646 6.03488352022492 5.72231952599863 5.79537341027412 6.12447177372762 6.1433684140604 7.49366516278569 6.81202331924195 7.19078193491487 7.30779668780337 6.92888864506016 7.2046155234102 6.86914369050132 6.80195886556519 6.98724503731477 7.0856813239877 6.86559196222598 6.65078983989187 7.67089452383496 0.20242372236107 0.203232565158281 0.203402366809855 0.217978195306511 0.204978314621483 0.206125195389330 0.206732027551626 0.202520712934946 0.219431111880186 0.206217118892236 0.207462790919051 0.207466833834054 0.208442397805621 0.203582068037735 0.211400537576842 0.200868877519702 0.200439429204213 0.208050681948347 0.200439429204213 2 2|0 -|/ 5600389 5600983 5600675 5600142 5605378 - gene protein_coding_gene FALSE TRUE AT2G13440.1 glucose-inhibited division family A protein similar to glucose inhibited division protein A [Trichodesmium erythraeum IMS101] (GB:YP_722488.1); similar to glucose-inhibited division A family protein [Musa acuminata] (GB:ABF72028.1); similar to glucose-inhibited division A family protein [Musa balbisiana] (GB:ABF70103.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Glucose-inhibited division protein A subfamily; (InterPro:IPR004416); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027); contains InterPro domain Glucose-inhibited division protein A; (InterPro:IPR002218) -0.614753956767156 -5.12646657687071 0.000773144035789383 1 6.60171467757212 13.485376598777 -0.614753956767156 0.143465392893293
AT2G46070_at 6.02709613948946 6.31391588792851 5.58621064871276 5.82501814783427 7.17442835578833 6.93854913036725 5.38718005872661 5.11661829580838 5.64236906747002 5.49936672538734 6.02133088331999 6.7063769712061 6.20503289018606 5.91407438548624 5.86043766948202 5.74068416657337 5.72796853902408 5.78066164884818 6.03225630478535 0.218142836359682 0.206601464282206 0.216941066787461 0.219518835727786 0.206601464282206 0.226818056544939 0.208933187120336 0.215786126278290 0.233674738800633 0.208789804579190 0.206601464282206 0.212333137887817 0.206601464282206 0.225049873199875 0.227499605345869 0.211445229186077 0.222610742599512 0.218543659350896 0.211103700240908 2 2 - 18953267 18953922 18953554.636 18953054 18954896 - gene protein_coding_gene FALSE TRUE AT2G46070.1 ATMPK12 (Arabidopsis thaliana MAP kinase 12); MAP kinase/ kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 12 (EC 2.7.11.24) (MAP kinase 12) (AtMPK12) (MPK12) [Arabidopsis Thaliana] (GB:Q8GYQ5;GB:O82361); similar to ATMPK4 (MAP KINASE 4), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G01370.1); similar to double HA-tagged mitogen activated protein kinase 12 [synthetic construct] (GB:ABG54339.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351) 0.469877918452799 5.12602719549023 0.000773578358315638 1 6.6012351510045 11.9057445464886 0.469877918452799 0.089611118202381
AT2G15620_at 10.1203031011986 10.1112790580251 10.1954334941630 10.2563850227763 9.90258292282648 9.71571379538664 11.7365798125347 11.8914881241364 10.3637390444380 10.8686246447712 11.0293734531716 11.0071820763718 10.7960762150883 10.6301776810091 10.7642877406423 10.8600422395984 10.5678330192864 11.2314319439008 10.7812851892884 0.0958625098284657 0.0883802389449889 0.0964206819476825 0.0915036875806694 0.0893044074260159 0.102675604079991 0.0933489521284537 0.0893142713789682 0.0967661201889358 0.087239851746485 0.0897990718341025 0.0912527880328854 0.0876028956066149 0.093142208637911 0.0923019761411827 0.0904406466493008 0.089726337400048 0.0948454798993621 0.0880946334982712 2 2 + 6819205 6819667 6819394.636 6817558 6820021 + gene protein_coding_gene FALSE TRUE AT2G15620.1 NIR1 (NITRITE REDUCTASE); ferredoxin-nitrate reductase involved in the second step of nitrate assimilation Identical to Ferredoxin--nitrite reductase, chloroplast precursor (EC 1.7.7.1) (NiR) (NIR1) [Arabidopsis Thaliana] (GB:Q39161;GB:Q8H163;GB:Q8H164); similar to SIR (sulfite reductase), sulfite reductase (ferredoxin) [Arabidopsis thaliana] (TAIR:AT5G04590.1); similar to ferredoxin-nitrite reductase [Lotus japonicus] (GB:CAC06095.1); similar to nitrite reductase [Nicotiana tabacum] (GB:BAD15363.1); similar to nitrite reductase [Nicotiana tabacum] (GB:BAD15365.1); contains InterPro domain Nitrite/sulfite reductase, flavoprotein alpha-component, domains 1 and 3; (InterPro:IPR011255); contains InterPro domain Ferredoxin-nitrite reductase; (InterPro:IPR008287); contains InterPro domain Nitrite and sulphite reductase 4Fe-4S region; (InterPro:IPR006067); contains InterPro domain Nitrite/sulfite reductase, hemoprotein beta-component, ferrodoxin-like; (InterPro:IPR005117); contains InterPro domain Nitrite and sulfite reductase iron-sulfur/siroheme-binding site; (InterPro:IPR006066) -0.378899730942269 -5.12181048019233 0.00077776003666875 1 6.59663140764712 21.2572290858640 -0.378899730942269 0.0433373860346131
AT1G32450_at 7.87187578851405 7.78359836998486 8.39101275648792 8.3950803169858 8.5265951203657 8.42745433048635 8.66159770422752 8.76342070749233 9.08037435477958 9.18395770009127 8.3960673229072 7.12052357401021 7.35773382555058 7.57942699963881 7.62655602224105 7.73314606747801 9.00649843410944 8.06570869399265 7.97970251717911 0.152496213926991 0.147108524324427 0.145038769061997 0.152892038254046 0.142599675524441 0.151998597686132 0.153715932060395 0.151974036153195 0.156028146872083 0.149462801625513 0.146937302876887 0.151688608722097 0.150527438306592 0.146409391241607 0.142599675524441 0.146247506766056 0.154472734706015 0.144199354281813 0.149898430217970 1 1|0 -|/ 11715449 11715952 11715667.1 11715130 11719950 - gene protein_coding_gene FALSE TRUE AT1G32450.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G19640.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT4G21680.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32535.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE93051.1); similar to transporter, major facilitator family, putative [Medicago truncatula] (GB:ABE88005.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.361195708999453 -5.119506409078 0.000780055339337185 1 6.5941145141797 16.6569389575719 -0.361195708999453 0.0289608248619575
AT4G24780_at 10.4219279356950 10.6177905423354 9.78175630407335 9.70369262238497 10.2944465768357 10.4246648480970 11.1993956569917 11.5058110310539 11.1571255926246 10.9476447921352 11.0901918709099 11.1893703424896 11.2490146790648 11.0781526036778 11.3046402975960 11.2723768273327 10.8407588598005 10.9241384282452 11.1268133587032 0.0861278899432031 0.0817889788034138 0.0898956066159396 0.0893781019099524 0.0842306898382657 0.0837085410175332 0.0842076365567368 0.0830103965724236 0.0886541234400784 0.0823927484060596 0.082821970497787 0.082821213551144 0.082046193598227 0.0925846079464464 0.0848150217583211 0.0825366247167323 0.0879505237506089 0.0863181282204097 0.087969368776326 4 4 - 12770645 12771277 12770857.818 12770341 12772343 - gene protein_coding_gene FALSE TRUE AT4G24780.1 pectate lyase family protein Identical to Probable pectate lyase 18 precursor (EC 4.2.2.2) (Pectate lyase A10) [Arabidopsis Thaliana] (GB:Q9C5M8;GB:O23667;GB:Q8LAW7;GB:Q9SB71); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT1G67750.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G63180.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G27400.1); similar to pectate lyase [Gossypium hirsutum] (GB:AAY85180.1); similar to pectate lyase [Malus x domestica] (GB:AAQ84042.1); similar to Pectate lyase [Prunus mume] (GB:BAE48664.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.421852648093008 -5.11826095313075 0.000781299120446674 1 6.59275362221428 21.5915732245803 -0.421852648093008 0.0681983111879412
AT3G13235_at 7.6798590602845 7.58086198313346 7.21466362449502 7.2560331159788 6.30060208735001 6.47627452369742 6.07449616913527 5.81757092579833 5.65015770788815 5.36386839419981 6.14359205062078 6.71519049376073 6.01596917087748 6.04597878033397 6.43839993612113 6.12177857112124 6.6156951941785 5.58198726850157 5.28461709025286 0.246647940388140 0.247011624580983 0.240522483205394 0.241362565063502 0.241665768748087 0.234967852260493 0.235210332272391 0.249471403709378 0.263525365124921 0.239265423623685 0.234293010013014 0.234293010013014 0.238968946197006 0.240748133122811 0.234906919682236 0.234293010013014 0.238096202017246 0.244728965809592 0.238566910031733 3 3 - 4271509 4272437 4272010.909 4271265 4274459 - gene protein_coding_gene FALSE TRUE AT3G13235.1 ubiquitin family protein similar to Peptidase aspartic, catalytic; UBA-like [Medicago truncatula] (GB:ABE83112.1); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Peptidase A2A, retrovirus, catalytic; (InterPro:IPR001995); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.40031958618412 5.11549108685767 0.000784072996947599 1 6.58972603294069 12.6213976848856 0.40031958618412 0.0569723818132806
AT1G11860_at 11.3945944435636 11.6028558735224 10.9663332473321 10.8594718637631 11.2656758272026 10.724346157782 12.4327314544753 12.5662505261091 12.4254410343494 12.5908991670538 12.6420087949625 12.8703163765433 12.3408569630888 12.5537294535233 12.56551308526 12.6902728005463 11.9941124636370 12.4754534199310 12.4346433272619 0.0806842112758023 0.0754685491566843 0.0819811584844323 0.0789458813213632 0.078116937585537 0.0903978024939663 0.0828930958335506 0.0751758790272888 0.0801795223366036 0.0751758790272888 0.0780455168742429 0.0751758790272888 0.0751758790272888 0.08256738906104 0.0775527855090432 0.0760216582946995 0.0765693515189874 0.0764524806934147 0.0756298126886022 1 1 + 4002542 4003208 4002935.727 4001279 4003441 + gene protein_coding_gene FALSE TRUE AT1G11860.1|AT1G11860.2 aminomethyltransferase, putative Identical to Aminomethyltransferase, mitochondrial precursor (EC 2.1.2.10) (Glycine cleavage system T protein) (GCVT) (GDCST) [Arabidopsis Thaliana] (GB:O65396;GB:Q42123); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G60990.2); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:P93256); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:O49849); similar to Aminomethyltransferase, mitochondrial precursor (Glycine cleavage system T protein) (GCVT) (GB:P49363); contains InterPro domain Glycine cleavage T protein (aminomethyl transferase); (InterPro:IPR006222); contains InterPro domain Glycine cleavage system T protein; (InterPro:IPR006223) -0.506139778466416 -5.11452103399531 0.000785046983652605 1 6.5886653963508 23.9766294721729 -0.506139778466416 0.104645474374407
AT3G26950_at 6.16418433411751 5.93142391451334 5.55558222118201 5.17795398609176 5.37600464469065 5.45331154011219 6.75315278930886 6.07053270164201 6.50563290134772 6.55459019249609 6.48104167661419 6.8697755635712 5.90450037188387 6.68186551419687 6.16640392287469 6.02195404908878 5.92198030044113 6.53799106205546 7.03691912837845 0.229463697590202 0.234075768814001 0.235114839610916 0.243655080532943 0.228365941650382 0.245529338920403 0.23969089421387 0.233454287437389 0.273453266192387 0.233021159484898 0.223924296398249 0.229497319946733 0.223924296398249 0.241423219758755 0.23350058612537 0.228764290364533 0.246181091597526 0.23757851257185 0.227638817806578 3 3|0 -|/ 9942471 9943026 9942735.5 9942375 9944717 - gene protein_coding_gene FALSE TRUE AT3G26950.1 similar to Os11g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067953.1) -0.607484343346463 -5.11308088914058 0.00078649539496088 1 6.58709045962082 12.3213864989564 -0.607484343346463 0.141516718369074
AT1G71260_at 6.06615264008515 6.31501101607807 6.20176430802555 6.1393806876373 6.0384116480191 6.0123724817188 6.80015641056834 6.89010897786744 4.48278369612247 5.02129741603198 4.07208207398035 4.24605902215728 4.27412679514898 3.96391361097362 4.85215761777537 4.67443293384217 5.38941252468954 4.20552284022296 4.91952604863084 0.258705994535645 0.249551338638298 0.255060632958015 0.251930006511774 0.250284929822252 0.245655584676130 0.261607122304765 0.249087632042070 0.268011321374953 0.246871609836993 0.250611007506213 0.250554746096107 0.248575196504794 0.246508446741165 0.247842290894129 0.245655584676130 0.261087821533737 0.264441354015867 0.245655584676130 1 0|1 /|- 26865567 26866732 26866345.75 26865319 26867084 - gene protein_coding_gene FALSE TRUE AT1G71260.1 ATWHY2 (A. THALIANA WHIRLY 2); DNA binding Encodes a homolog of the potato p24 protein. It shares the conserved KGKAAL domain, a putative DNA-binding domain, with potato p24 and is localized to mitochondria and not the nucleus. similar to ATWHY1/PTAC1 (A. THALIANA WHIRLY 1, PLASTID TRANSCRIPTIONALLY ACTIVE1), DNA binding [Arabidopsis thaliana] (TAIR:AT1G14410.1); similar to Os02g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045956.1); similar to DNA-binding protein p24 [Solanum tuberosum] (GB:AAF91282.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Plant transcription factor; (InterPro:IPR013742) -0.384015303022937 -5.11243311146794 0.000787147837730131 1 6.58638193137644 10.9417110117219 -0.384015303022937 0.0472637949524171
AT1G49850_at 5.58060406441263 6.23819625487709 5.8752024253983 6.46168867084086 7.09053853572708 6.83916274281333 5.1260610069736 5.32105238939149 4.92125931868756 4.5210655637468 5.1363183114146 5.26354840776429 5.13769219125523 5.1484566731545 4.97715496035471 5.48164450219284 5.06157494920309 4.6466141880799 4.86854355079895 0.209618552977166 0.207198860223389 0.209609478540326 0.214123105674409 0.207414399406599 0.215820336586622 0.204206166779483 0.212635264576378 0.219282446840983 0.213338905746282 0.209503037317838 0.205253804704829 0.207348941571339 0.224427404317141 0.215914838655508 0.214215572814969 0.219860527739263 0.205877343769544 0.214181039698915 1 0|1 /|- 18459004 18459776 18459312.7 18458732 18460212 - gene protein_coding_gene FALSE TRUE AT1G49850.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G15580.1); similar to RING-H2 finger protein [Glycine max] (GB:AAN03470.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.668252854982074 5.11102924822025 0.000788563831015244 1 6.58484615155266 11.0050207616402 0.668252854982074 0.162118605997295
AT1G19650_at 7.35070348520809 7.3900558901521 7.31590947367038 7.29473005213337 7.62227346385204 6.9385344246007 8.60347168705584 8.35614263601301 6.62458811468113 7.78092677774372 6.39192582866166 6.58651846256416 6.92197404566012 6.96209808296303 5.9064606901292 7.35803399818119 7.35073764500712 6.63185285862962 7.36859759306315 0.210224452755699 0.200893592091089 0.212277460080113 0.20629307436515 0.203084470524842 0.213255038886679 0.215760660975953 0.208782713442853 0.205135749949653 0.202124935456161 0.20414700720588 0.207677741748463 0.207528357919615 0.199639559661638 0.215619872988009 0.203843536224381 0.216437907164659 0.199639559661638 0.203970630889323 1 1|0 -|/ 6796690 6797210 6796907.2 6796193 6799750 - gene protein_coding_gene FALSE TRUE AT1G19650.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G75370.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.563284432365647 -5.11090275073015 0.00078869155740875 1 6.58470775015406 14.6198464874043 -0.563284432365647 0.126065056359519
AT2G47440_at 8.01168778312713 8.35702174608152 7.47301979599418 8.0097080729898 8.23885486277868 8.29059470338932 9.43208054071096 9.4709990419937 10.5898476217036 9.55993302231574 10.7659769917316 10.0765666815828 10.2781453591343 10.4322030654653 9.6492355547854 9.74837294773767 8.89661356247529 9.7051291331036 10.3716781390981 0.111984542165303 0.104272519467240 0.121239801903416 0.117573887143194 0.114040769070337 0.111354487060924 0.105683988269306 0.112342909098206 0.109126565988449 0.104255847943173 0.105756789293518 0.104255847943173 0.108588458449754 0.104255847943173 0.105405898847320 0.104255847943173 0.114226787182777 0.108692037500266 0.104934684050149 2 2 + 19478283 19478706 19478473.545 19476789 19478956 + gene protein_coding_gene FALSE TRUE AT2G47440.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02100.1); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G62570.1); similar to tetratricopeptide repeat, putative [Medicago truncatula] (GB:ABE90991.1); similar to tetratricopeptide repeat, putative [Medicago truncatula] (GB:ABE78091.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.522346050780406 -5.11051498743287 0.000789083227894547 1 6.584283478951 18.4694208215704 -0.522346050780406 0.111009072042143
AT1G75280_at 10.3464361041915 10.4325897590151 10.3761320317348 10.5326972047661 10.0830093505663 10.1177435912096 11.6216902670969 11.7330716994936 10.6667605215507 11.1398953680617 10.8653088951339 10.6452078000669 10.7126050343444 10.9388356052480 10.4107916915888 10.9897089631409 11.2469379570266 10.6319463366195 10.5574623005990 0.105604246205266 0.102921080092529 0.116223955232504 0.103153032057395 0.102921080092529 0.113569999940953 0.102921080092529 0.108019902263600 0.111933250760427 0.104041871507988 0.104114974506344 0.102932147394231 0.104185429441125 0.104309987632175 0.103299378167243 0.104973780626975 0.107561815861456 0.111624094438762 0.107793019288181 1 1 + 28256283 28256924 28256548.091 28255621 28257280 + gene protein_coding_gene FALSE TRUE AT1G75280.1 isoflavone reductase, putative isoflavone reductase, putative, identical to SP:P52577 Isoflavone reductase homolog P3 (EC 1.3.1.-) {Arabidopsis thaliana}; contains Pfam profile PF02716: isoflavone reductase. Involved in response to oxidative stress. Identical to Isoflavone reductase homolog P3 (EC 1.3.1.-) [Arabidopsis Thaliana] (GB:P52577;GB:Q9FRL9); similar to isoflavone reductase, putative [Arabidopsis thaliana] (TAIR:AT1G75290.1); similar to TPA: isoflavone reductase-like protein 4 [Vitis vinifera] (GB:CAI56333.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.369461512110545 -5.10983045079086 0.000789775178195804 1 6.58353442744432 21.4520248420759 -0.369461512110545 0.0369330426286285
AT3G02070_at 5.90104180345594 6.12433972481584 5.93342313787928 6.10357472191986 6.76483763620458 6.93393626829967 4.47678084466447 4.60153816971451 5.29540999126084 5.10138079907211 5.43552676112489 5.00034458502448 4.95623210778 4.79035903007974 4.74287350119947 4.22716173823964 4.92615958438295 4.57282322698192 5.13348787307471 0.24317552563463 0.245210648125688 0.252576520148322 0.240620206579343 0.246798007805288 0.251595197385014 0.247802726173293 0.248606410393496 0.246709996386262 0.243328274411391 0.241084239780319 0.240620206579343 0.240620206579343 0.264300485337758 0.244097637386112 0.245381408980062 0.240620206579343 0.244304216191521 0.244992116120422 3 3|0 +|/ 361468 363092 362291.25 360928 363436 + gene protein_coding_gene FALSE TRUE AT3G02070.1 OTU-like cysteine protease family protein similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G22260.1); similar to Os02g0168600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046015.1); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); similar to Os04g0402300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052693.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.406346658897787 5.10648363198328 0.000793167751331004 1 6.57987097547705 10.8590313490297 0.406346658897787 0.0606857727783796
AT2G22660_at 9.53718652480757 9.4224338569196 9.60590078595855 9.70688009494577 9.76501406375004 9.6322814340881 8.63257682410262 8.33003358454242 9.10355359658229 9.12077268034058 9.24834212054814 9.03168807336637 9.327612918165 9.16165910394174 8.83725767752844 9.38905314681292 9.49376127419546 9.48381089024924 9.14345927324877 0.097854173725186 0.099324474632241 0.0985853136859332 0.101185382811274 0.107120495604941 0.101426583113492 0.102154561515722 0.106210024607695 0.110455323086832 0.101474872942035 0.102767772174336 0.097854173725186 0.0986028924198447 0.104891752861332 0.109525412125820 0.101818280513272 0.100889166978117 0.097854173725186 0.0998570289652861 2 2 + 9637368 9637857 9637617.636 9634488 9638161 + gene protein_coding_gene FALSE TRUE AT2G22660.1|AT2G22660.2 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G37900.1); similar to Protein of unknown function DUF1399 [Medicago truncatula] (GB:ABE84186.1); contains InterPro domain Protein of unknown function DUF1399; (InterPro:IPR009836) 0.41050718215146 5.10420384604653 0.000795487771844417 1 6.57737435602871 18.5136600631351 0.41050718215146 0.0629964991944873
AT3G55320_at 5.61316261310864 5.57027045337571 5.77817528878419 6.07437663055033 5.80316867667462 5.72233456760258 5.76732753867809 5.86158895061465 5.21027132717187 5.10455574426754 5.83207436601194 5.66931326574251 5.808589839688 5.59212319708834 5.50015217183557 6.19779571529608 5.6379082852083 5.59187347356447 4.9098856427004 0.242493513635245 0.244024663266097 0.252111735921171 0.247338733814538 0.247868495651715 0.255727465622266 0.244822731313963 0.25495025346441 0.254359228118017 0.254208589218012 0.251790756030788 0.254790694227036 0.255405246536078 0.249588562689410 0.254224187948849 0.242493513635245 0.251389829471013 0.256074566912443 0.253529281727774 3 3 - 20518370 20518930 20518624.636 20517969 20524370 - gene protein_coding_gene FALSE TRUE AT3G55320.1 PGP20 (P-GLYCOPROTEIN 20); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 14 (P-glycoprotein 20) (MDR14) [Arabidopsis Thaliana] (GB:Q9M3B9;GB:Q8GX68); similar to PGP6, ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G39480.1); similar to P-glycoprotein [Solanum tuberosum] (GB:AAD10836.1); similar to Os03g0280000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049736.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59584.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.397625476608231 5.10123458503144 0.000798520500286712 1 6.57412128786623 11.1756171035991 0.397625476608231 0.056074608521541
AT1G44800_at 6.17379461308998 6.94186513059485 8.2301014343742 8.70286529149287 7.40426588261066 7.11254654883861 8.92788445366374 9.1518422621064 7.9161623294278 7.97098987372649 9.36904222863266 9.6201524002125 8.80127008190614 8.83935121320354 9.1802145595794 9.1403192766366 9.09809874332334 9.23473513482314 7.66824970664745 0.185959557061993 0.182316462212943 0.171838833438763 0.174082078767109 0.179860250620982 0.189348524653149 0.178266149037509 0.172923927510748 0.17637955975043 0.182375145725691 0.181512193857516 0.179464257001080 0.174220140867521 0.178844014794272 0.175479400282656 0.172283035438983 0.171838833438763 0.172938331815258 0.195551764289174 1 1|0 -|/ 16916813 16917586 16917208.8 16916449 16919437 - gene protein_coding_gene FALSE TRUE AT1G44800.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G08300.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); similar to Os02g0768300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048238.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.686097746327215 5.09849404515997 0.000801330771813381 1 6.57111739988996 16.3367449977915 0.686097746327215 0.168556953022860
AT1G77810_at 6.58930162341908 6.8704162738414 7.68908256891434 7.66145813161166 6.63610856113634 5.84584196385422 5.57737635122644 5.30457254282865 5.1482372225646 4.65939982410231 5.27994344532331 5.13342875412727 5.30657660982037 5.19759926830473 5.34614422548970 5.51816354902923 5.70920355886587 5.01289089678896 4.9202316464948 0.325028104355955 0.322421702730468 0.332778698035201 0.324208162433523 0.338989039091084 0.323885163423220 0.319673470398044 0.319673470398044 0.331414141726237 0.328882855172090 0.320632084240340 0.320961455897381 0.325841766564776 0.326301396184993 0.319673470398044 0.319673470398044 0.319673470398044 0.331051716561503 0.319673470398044 1 1|0 -|/ 29265888 29266469 29266178.286 29265456 29268007 - gene protein_coding_gene FALSE TRUE AT1G77810.1|AT1G77810.2 galactosyltransferase family protein similar to DD46, transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22015.1); similar to Avr9 elicitor response protein [Nicotiana tabacum] (GB:CAA06925.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659)|similar to DD46, transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22015.1); similar to Avr9 elicitor response protein [Nicotiana tabacum] (GB:CAA06925.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.638205166315848 5.09591756321406 0.000803982615545704 1 6.56829210668238 11.6329114285320 0.638205166315848 0.1527134379154
AT4G38160_at 6.87116574470609 7.17720278845443 6.02885581341506 6.14279532736925 6.82735033796572 6.78641537781527 6.62633830784383 6.81922962805539 6.66169614173967 7.07613152498044 6.14176905418798 7.15712249481015 6.49295663469673 6.10257984563568 7.2097868548488 6.65922699358735 6.16664873710102 6.42435087916442 7.1060926717505 0.187041820156067 0.187775559533737 0.197210733871479 0.190681064761810 0.181346332316887 0.189463663314443 0.177421091120626 0.185947478076877 0.185526080822218 0.174780036421255 0.190651554978048 0.188569380771971 0.186936884269763 0.187077428501979 0.185169160323976 0.184210284843550 0.197626509871247 0.186409308973316 0.174780036421255 4 4 + 17902825 17903382 17903071.818 17902267 17904294 + gene protein_coding_gene FALSE TRUE AT4G38160.1|AT4G38160.2 PDE191 (PIGMENT DEFECTIVE 191) similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to Os08g0515800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062235.1); similar to mTERF [Medicago truncatula] (GB:ABE87961.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690); contains InterPro domain Rad51, N-terminal; (InterPro:IPR010995)|similar to mitochondrial transcription termination factor family protein / mTERF family protein [Arabidopsis thaliana] (TAIR:AT4G02990.1); similar to Os08g0515800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062235.1); similar to mTERF [Medicago truncatula] (GB:ABE87961.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.41539908126323 -5.09251210089235 0.000807502330393749 1 6.56455595184957 13.4060584821586 -0.41539908126323 0.0660161280732496
AT1G03060_at 6.90687580960788 6.75982456465929 6.53905346172139 6.36975716721141 6.59721555626673 6.59260890818698 6.04301145849858 6.13468459029389 5.90062448245653 5.48608115017305 6.38344706811022 6.88935628536395 6.41342761961621 6.29181123347161 6.52954696260327 6.1916168290242 5.70764601924776 6.2300255194547 5.54433730640287 0.220119989508927 0.214351624256979 0.215982908905702 0.225357049154108 0.211436726552599 0.216504974418973 0.212264535520804 0.215589430988988 0.225901052025371 0.213621814761514 0.210455100086166 0.220511495558895 0.211487881020392 0.210455100086166 0.212910257907330 0.211035853354125 0.221951957498875 0.229826170662752 0.215236860733584 1 1 - 712977 713487 713292.727 712473 726891 - gene protein_coding_gene FALSE TRUE AT1G03060.1 WD-40 repeat family protein / beige-related similar to WD-40 repeat family protein / beige-related [Arabidopsis thaliana] (TAIR:AT4G02660.1); similar to WD-40 repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98825.1); similar to putative beige protein [Oryza sativa (japonica cultivar-group)] (GB:AAP12994.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Beige/BEACH; (InterPro:IPR000409); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.374744190007864 5.09226656490906 0.000807756750439245 1 6.56428649234205 12.4795242754502 0.374744190007864 0.0419315729532278
AT3G11410_at 9.4453077709308 9.340683926036 10.2059076842524 10.1926839363854 10.2582885934271 10.0230056484126 10.0950924854378 10.2674017572375 9.30043863384621 9.39049177789523 9.69469500938348 9.31192123997967 10.4020584036563 9.66820980117108 9.3383971021963 9.8259176136363 10.3092603648104 9.7923279383876 9.4797849574468 0.0946001136492109 0.0922234875345866 0.095130449839693 0.0952185724968333 0.0949215876561671 0.0997307974951385 0.0955364495907575 0.0954784384648517 0.0959974145696603 0.0970009616990027 0.0939248332750535 0.093102423010792 0.0933267766820682 0.096641045575014 0.0965337137912877 0.0941131899970482 0.098633726551287 0.0962177529815864 0.0950453856255238 3 3|0 -|/ 3584299 3584915 3584593.556 3583889 3585796 - gene protein_coding_gene FALSE TRUE AT3G11410.1 AHG3/ATPP2CA (ARABIDOPSIS THALIANA PROTEIN PHOSPHATASE 2CA); protein binding / protein phosphatase type 2C Encodes protein phosphatase 2C. Negative regulator of ABA signalling. Expressed in seeds during germination. mRNA up-regulated by drought and ABA. Identical to Protein phosphatase 2C (EC 3.1.3.16) (PP2C) [Arabidopsis Thaliana] (GB:P49598); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G07430.1); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G29380.1); similar to protein phpsphatase 2C (PP2C) [Fagus sylvatica] (GB:CAB90633.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.392729979232700 5.0914404415967 0.000808613404595338 1 6.56337979723328 19.5700899205393 0.392729979232700 0.0536663595018461
AT2G02570_at 8.73542069103674 8.69492138707707 8.90146441584364 8.51855333846824 9.28597831396792 8.8228151461917 8.16000934837152 7.5772622427414 6.79536187061906 7.64565997428329 8.0544467792248 8.26343175592266 7.98338750764158 8.21266797122055 7.87963500834816 8.18785106021121 8.01826488276603 7.87947944454187 7.81911172081969 0.186721995779091 0.179410648773295 0.190144176946466 0.185386995697358 0.189380862038304 0.187785898749576 0.188741343237394 0.205967562145094 0.222300686903227 0.184115599204671 0.182207658378207 0.182037664170483 0.185000151117266 0.185785140390215 0.191691743575191 0.184672607252421 0.185810800529190 0.193934463841340 0.182097517566344 2 2 - 698378 699244 698863.182 697950 700916 - gene protein_coding_gene FALSE TRUE AT2G02570.1|AT2G02570.2|AT2G02570.3|AT2G02570.4 nucleic acid binding similar to Os08g0109900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060814.1); similar to hypothetical protein DDBDRAFT_0192063 [Dictyostelium discoideum AX4] (GB:XP_629067.1); contains InterPro domain Tudor; (InterPro:IPR002999) 0.615075207819227 5.0911522439512 0.000808912485327286 1 6.56306346287446 16.3270231470333 0.615075207819227 0.145033374866663
AT1G68585_at 7.42416998907093 8.0284386504907 6.53078652878197 6.81658147482549 7.36024570531914 6.99748418113458 7.02355618213062 7.58786857311406 8.45889761060787 7.61653120790133 7.85893153226545 7.5130742134451 6.96043295367293 7.50860965028926 6.16853642142712 6.89240165025655 6.38259502746509 6.859757334577 7.23501912012853 0.202071736938848 0.194010035153949 0.213666659835731 0.203493545015022 0.200931150771369 0.202934010378759 0.212504875054271 0.198920211256665 0.206480792142233 0.199443170468611 0.194010035153949 0.194010035153949 0.194299318312034 0.206672543731674 0.20813112259368 0.203779194665340 0.201222555308085 0.198633434892538 0.200431953098139 1 1|0 +|/ 25760577 25761029 25760807.8 25760263 25761226 + gene protein_coding_gene FALSE TRUE AT1G68585.1 metal ion binding contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) -0.670920420570357 -5.09069725944179 0.00080938489593826 1 6.56256402793816 14.6152372410105 -0.670920420570357 0.163887770372686
AT4G23040_at 6.08982903640262 6.15432607078964 6.07966350406687 5.51700991214371 6.04165153588771 6.32499686906564 4.63894468191715 4.80050999552695 4.51663461910095 4.64528136838368 4.99352646368692 4.81432401118344 4.73942498436243 5.32432224937112 5.0091243284596 5.05305972626143 5.16300097626154 5.05382722138715 4.44951591624339 0.246124513538205 0.249488309356404 0.235580674306344 0.232624800130239 0.236529737617281 0.243099158270291 0.238937908334411 0.230871257480352 0.242682929000740 0.242667231736610 0.239367054811568 0.235463336825802 0.233114156725911 0.232764721331633 0.237816065023418 0.235639359440745 0.24300280610432 0.244848882832679 0.241054329067724 4 4|0 -|/ 12075733 12076777 12076180.7 12075562 12078753 - gene protein_coding_gene FALSE TRUE AT4G23040.1 UBX domain-containing protein similar to SAY1 [Arabidopsis thaliana] (TAIR:AT4G11740.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46494.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.525805143172129 5.09028313562756 0.000809815141499054 1 6.56210941336742 10.4838515572406 0.525805143172129 0.113099777275138
AT3G03640_at 7.7606561464216 8.25905271884032 7.09729185649544 7.95199970404466 6.0013289295807 5.72829036130362 8.81332564328723 8.98493187760394 5.11595096940709 5.95786747311985 5.48743084678724 6.33550345515445 5.8875801360182 6.03009508532182 5.61930711301099 5.84252065230064 4.98215302128407 5.7557961001693 5.19342826584353 0.249790673351527 0.255452231067006 0.248678845936571 0.256118944633947 0.260811341079003 0.258574604103281 0.261364051937777 0.259778261393626 0.262714463354409 0.253421013432279 0.250162141047068 0.248678845936571 0.255605132694047 0.258374665643795 0.250766051379975 0.248678845936571 0.259439099005645 0.254721327061544 0.266895619659739 3 3|0 +|/ 883100 883982 883681.375 881013 884164 + gene protein_coding_gene FALSE TRUE AT3G03640.1 GLUC (Beta-glucosidase homolog); hydrolase, hydrolyzing O-glycosyl compounds Encodes beta-glucosidase (GLUC). similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G21370.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.719815575941575 -5.08692498061404 0.000813313221260389 1 6.55842178014503 13.1570915900535 -0.719815575941575 0.180086923355687
AT2G15900_at 6.76885786437868 6.79502696830605 6.41677341050294 6.92703653349507 7.16987700053219 6.83781404459187 5.53606185995076 5.20106787192573 4.96405410869136 4.93207451818412 5.25629383870152 4.68883910232829 5.7976639190339 5.32796990857367 4.92048645761153 5.53328725421002 5.8736288747035 5.18027808088248 5.08972509950961 0.285006013900619 0.293912631311497 0.29523075077146 0.285692908603573 0.285006013900619 0.293758125904314 0.285006013900619 0.290302774738737 0.28977705776968 0.29270125100856 0.288948879865929 0.289842283515052 0.289489576666980 0.285006013900619 0.287391422625365 0.287239645021191 0.302864395434165 0.292466254258813 0.294007247289402 2 2|0 +|/ 6938037 6939135 6938522.889 6934472 6939784 + gene protein_coding_gene FALSE TRUE AT2G15900.1 phox (PX) domain-containing protein similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G15240.1); similar to phox domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91571.2); contains InterPro domain PX-associated; (InterPro:IPR003114); contains InterPro domain Phox-like; (InterPro:IPR001683) 0.544821480092063 5.08610451106955 0.000814170370995744 1 6.55752050445 11.6153596966941 0.544821480092063 0.120337098537059
AT1G50660_at 7.33729556231585 7.57028207340978 6.4984987310872 6.90772412463153 6.65446972424382 6.94225188527102 7.33900943091812 7.42251746226259 7.17046750168191 7.54457477712732 7.4827764432503 7.15274989487874 6.93210281438173 7.28425331380457 7.12616361221722 7.40141362365181 6.43366561234317 7.54699304818116 7.69379226284971 0.164321057181851 0.160455330721114 0.161693021141221 0.163146408140617 0.167084650666455 0.167822971688549 0.169008620659195 0.165358718002253 0.172681664587345 0.165347154945839 0.162161215195403 0.160455330721114 0.164765550453272 0.163745008472468 0.160455330721114 0.160455330721114 0.162518978676716 0.164436066230160 0.161823422862277 1 1 + 18777475 18777895 18777667.091 18774605 18778354 + gene protein_coding_gene FALSE TRUE AT1G50660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20350.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44287.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.483068367232955 -5.08591169699347 0.000814371947493468 1 6.5573086830341 14.4038192788799 -0.483068367232955 0.0965918369222319
AT3G13180_at 6.80936328301419 6.44861071301346 5.42117653407167 5.22256875482957 5.94233137680963 5.99393861222418 6.60212743563977 6.17491912753303 5.49111858996505 5.66530185903045 5.10912201469165 5.95593926964904 5.65650639787746 5.01634702032463 6.19721422456283 5.72492707717743 5.30570757737975 5.05283322744346 5.75401897772263 0.233843514032366 0.229751855224895 0.237126124943071 0.232588916216334 0.227485282435598 0.237874318586129 0.228686190136347 0.237488649245901 0.237623080114509 0.239276578859809 0.230131481583515 0.231414723817864 0.235479392125591 0.235075266355211 0.234698688541532 0.228052197983999 0.238504058210418 0.249579368130190 0.232414763644702 3 3|0 -|/ 4236341 4237381 4236889 4236024 4240016 - gene protein_coding_gene FALSE TRUE AT3G13180.1 NOL1/NOP2/sun family protein / antitermination NusB domain-containing protein similar to nucleolar protein, putative [Arabidopsis thaliana] (TAIR:AT4G26600.1); similar to Os09g0477900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063467.1); similar to ribosomal RNA small subunit methyltransferase B [Salinibacter ruber DSM 13855] (GB:YP_445018.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027); contains InterPro domain Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; (InterPro:IPR001678) -0.499119930708722 -5.08409779787915 0.000816270936055887 1 6.55531564574872 11.6464483513308 -0.499119930708722 0.103074023865563
AT4G16390_at 8.1025530527859 8.61268017560251 8.02632360132022 7.95040152455451 7.6516293273899 7.5774262840419 8.45784163472319 8.3408942956279 7.48671675430096 8.03026910875589 7.16554712178476 8.00633156899434 7.18683737391318 7.33159839952898 8.12312172682368 7.44409097188093 7.26190206152335 6.18169535610004 7.60083496017998 0.209703119745486 0.217201673909305 0.214386706713736 0.210104155555825 0.213825711442623 0.210276683417599 0.219338784790991 0.215226391601099 0.214539752559516 0.206893967794852 0.209057325186666 0.202789806860281 0.210578288546064 0.220121892632558 0.214534620376255 0.210172285324097 0.231617623436744 0.245290794783448 0.204808458823388 4 4 + 9259532 9260088 9259909.909 9257980 9260300 + gene protein_coding_gene FALSE TRUE AT4G16390.1 chloroplastic RNA-binding protein P67, putative similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46580.1); similar to RSP67.2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94642.1); similar to RSP67.2 [Raphanus sativus] (GB:CAC01941.1); similar to 67kD chloroplastic RNA-binding protein, P67.1 [Raphanus sativus] (GB:CAC01940.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.472673403600931 -5.08353450722076 0.000816861629173154 1 6.55469660514691 15.6117591604962 -0.472673403600931 0.092414530780715
AT1G31130_at 9.49975635144118 9.90009147112377 10.0223018764681 10.2195987830792 10.0753510996590 9.66379407956464 9.45482694486706 9.3264727815031 8.5467526593055 8.5319374021018 8.89146788123973 8.93448032802395 9.33917121716747 9.37635638088546 8.5419395623092 9.41828264744673 9.28413272220822 8.70785945950708 8.39657968305028 0.166810540153482 0.166125478646303 0.172030738671931 0.159575498262624 0.166746154523468 0.167847747807528 0.167435147270251 0.170282598894549 0.164975477333200 0.169951127135879 0.169989771393688 0.164220306124793 0.168810643942950 0.173714471153665 0.181456076189626 0.159575498262624 0.175931815672433 0.172304606523797 0.166947520512428 1 1 - 11115009 11115495 11115299.636 11114682 11116176 - gene protein_coding_gene FALSE TRUE AT1G31130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44860.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90086.1); contains domain gb def: Hypothetical protein AT4g16850 (PTHR22597:SF10); contains domain FAMILY NOT NAMED (PTHR22597) 0.50996463291079 5.08191580072105 0.000818561667637598 1 6.55291737529164 18.5470081016304 0.50996463291079 0.107384323284250
AT1G04240_at 6.55171068171696 6.55432199631628 6.89474477156734 7.04796665118734 7.80196267009799 7.463738724082 7.64300369765097 7.63750084628916 6.87479365173838 7.36867566614472 9.08516807902878 8.2785005623219 8.34824841007139 8.38273946682205 7.85912351975107 7.84110938520227 7.83447065352662 7.69132588041567 8.40203766731229 0.162185575399243 0.150353302802749 0.153014039212418 0.151236304838159 0.149403384364973 0.148870572117841 0.149505559717952 0.153713657856637 0.155842654782393 0.155268195106960 0.159063603026688 0.146348816111471 0.149092161812160 0.150503419138321 0.147742196662077 0.14635618406308 0.153251949529382 0.148185679383120 0.147281013330759 1 1|0 -|/ 1128563 1129264 1128921.556 1128187 1129550 - gene protein_coding_gene FALSE TRUE AT1G04240.1 SHY2 (SHORT HYPOCOTYL 2); transcription factor SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. Identical to Auxin-responsive protein IAA3 (Indoleacetic acid-induced protein 3) (Short hypocotyl) (Suppressor of HY2) (IAA3) [Arabidopsis Thaliana] (GB:Q38822;GB:O04741); similar to ATAUX2-11 (indoleacetic acid-induced protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT5G43700.1); similar to Gbiaa-Re [Gossypium barbadense] (GB:AAQ74955.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.411026157492163 5.08053256790129 0.000820017447343089 1 6.55139659789864 15.0561627913840 0.411026157492163 0.0642658671936957
AT1G19380_at 4.71544217779623 4.77201688921358 3.30786173313137 3.48995604516609 4.54379184564256 4.21736404142902 3.26451806706658 2.76990268654029 6.29786180056126 4.49841352148522 7.46964101054393 7.41961647590585 4.4450687191308 7.66681062831122 5.98458934605047 5.8792948735449 4.00333270710267 5.90115575125888 4.45885580988317 0.298915594809754 0.288981589573415 0.307665539979187 0.292739860748943 0.282760610439894 0.303341797643472 0.289746338321092 0.296789889865562 0.301250518964409 0.282760610439894 0.304284708614951 0.302183061077264 0.29178102694483 0.301121297208144 0.289893751974100 0.282760610439894 0.29431978889683 0.298904981107667 0.283781364011778 1 1 + 6698132 6698613 6698358.455 6698049 6698815 + gene protein_coding_gene FALSE TRUE AT1G19380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65650.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69762.1); contains InterPro domain Protein of unknown function DUF1195; (InterPro:IPR010608) 0.510209219762983 5.07533888043392 0.000825508692211434 1 6.54568340001516 9.47572288556037 0.510209219762983 0.107733793835612
AT1G75100_at 8.99257369752833 9.08698554172146 9.45089685958502 9.21828215488322 9.47045781821348 9.23279239936848 10.3157459735800 9.94618463262971 10.3729398966152 10.1048920340670 9.47977300044707 9.44698298940575 9.53422776869396 9.75216667098046 9.32931680288843 9.937682647756 9.36753891109865 9.66526467744382 10.2484832173540 0.0968154942050252 0.0903724149753324 0.0970476083826053 0.0897251269212164 0.0898731533804192 0.098774291268297 0.094437308834425 0.0986879943636456 0.0904758261051952 0.0869218482135083 0.090560721632734 0.0892036479125481 0.0897061125632381 0.091419201620926 0.0887181966521832 0.0927021979632495 0.099278214399549 0.0901783106344084 0.092293268480373 1 1|0 -|/ 28194782 28195838 28195339.625 28194604 28197461 - gene protein_coding_gene FALSE TRUE AT1G75100.1 JAC1 (J-DOMAIN PROTEIN REQUIRED FOR CHLOROPLAST ACCUMULATION RESPONSE 1); heat shock protein binding Contains a J-domain at the C-terminus which is similar to the J-domain of auxilin, a clathrin-uncoating factor in cow, yeast and worm. Arabidopsis contains 6 other proteins similar to auxilin. Expressed in leaves and stems, but not in roots. Localized in the cytoplasm. Required for the chloroplast accumulation response, but not for the avoidance response. No molecular function known. similar to AUL1 (auxin-like 1 protein), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT1G75310.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94473.1); similar to Os03g0198300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049277.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.460125509554235 -5.07178680549782 0.00082928727300396 1 6.54177323221076 19.3673520011560 -0.460125509554235 0.0875738049132573
AT2G16740_at 9.24987228341637 9.35689852183998 9.90356108385834 9.95089471810931 10.0065068763485 9.69608239058783 9.5237956102689 9.82935909327994 9.20027838146374 9.46674812070238 10.0374642778178 9.82984745142546 9.80187236085116 9.75537250962533 9.42578858897333 9.79327289681121 9.74547988603567 9.7096659892636 9.18737498869378 0.144875390780057 0.135264293689217 0.15383378293766 0.147219077266352 0.137944188194607 0.142286917803516 0.141991201612811 0.138557591366915 0.143948717670453 0.135471281892457 0.141682787245913 0.138071528021566 0.141922890776030 0.136146839223683 0.149710260221476 0.135264293689217 0.145949944240838 0.144502983504076 0.145335515658974 2 2|0 +|/ 7275000 7275794 7275362.875 7274804 7276024 + gene protein_coding_gene FALSE TRUE AT2G16740.1 UBC29 (ubiquitin-conjugating enzyme 27); ubiquitin-protein ligase similar to UBC10 (ubiquitin-conjugating enzyme 10), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G53300.2); similar to Os04g0667800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054191.1); similar to ubiquitin-conjugating enzyme 8 [Capsicum annuum] (GB:AAR83891.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.438412444085926 5.06925230183588 0.000831994880527174 1 6.53898183440192 19.2131943182405 0.438412444085926 0.0780527359077298
AT4G03000_at 5.51477806435047 5.52893406070816 5.48102126076478 5.15874371822112 5.3366181418238 5.22579624839021 5.72251474316934 5.82456020257187 5.93519213098239 5.95588273477811 5.05050853121827 5.42712906676037 5.3959255421727 5.38879261484712 5.33698076506247 5.80754810556294 5.85986138501824 5.3774838182754 5.86428829085989 0.231240502978199 0.234302883895865 0.233837599931778 0.252575768090423 0.243134702883922 0.260800290972841 0.23469439509854 0.232424830589810 0.253634463523591 0.233915528285794 0.235784044470698 0.231127740501368 0.233105901742086 0.238151319541132 0.226136745053486 0.226136745053486 0.231302747376648 0.240133369657011 0.236070012802245 4 4 + 1326835 1327316 1327103 1324136 1327520 + gene protein_coding_gene FALSE TRUE AT4G03000.1|AT4G03000.2 protein binding / zinc ion binding similar to C2 domain-containing protein / GRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G03370.1); similar to hypothetical protein cgd4_200 [Cryptosporidium parvum Iowa II] (GB:XP_625629.1); similar to Os05g0141500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054605.1); similar to Os09g0371700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063022.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.405038791162714 -5.06848488011771 0.000832816609432808 1 6.53813640024216 11.1611123620774 -0.405038791162714 0.0616128010842964
ATCG00190_at 9.14243620038899 9.61892866985534 9.68166168551256 9.8927037265042 8.62028903051169 8.34075062871128 9.34019677348305 9.43131989220555 10.0710970359324 9.98999186589612 9.20160794809823 9.69806033326328 8.94903117854937 9.3874177093685 9.0828717228705 9.77690172472675 8.80227068118661 10.0854078892572 10.3016779010427 0.147805855873968 0.142573907191807 0.143385383842969 0.142780885974629 0.150250165374947 0.159485859043068 0.143615678268015 0.144770014933526 0.143713231766491 0.148430848617464 0.144328186289597 0.142573907191807 0.145778745457645 0.147472444114337 0.142573907191807 0.147166740763435 0.148179738543565 0.143426751313159 0.149339298051975 C C - 23166 23424 23298.625 23111 26329 - gene protein_coding_gene FALSE TRUE ATCG00190.1 Chloroplast DNA-dependent RNA polymerase B subunit. The transcription of this gene is regulated by a nuclear encoded RNA polymerase. This gene has been transferred to mitochondrial genome during crucifer evolution. Identical to DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (rpoB) [Arabidopsis Thaliana] (GB:P50546); similar to NRPB2 (EMBRYO DEFECTIVE 1989), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21710.1); similar to DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (GB:P46818); similar to RNA polymerase subunit beta [Sinapis alba] (GB:CAA57814.1); similar to DNA-directed RNA polymerase beta chain (PEP) (Plastid-encoded RNA polymerase subunit beta) (RNA polymerase subunit beta) (GB:P50546); contains InterPro domain RNA polymerase beta subunit; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 7; (InterPro:IPR007641); contains InterPro domain RNA polymerase Rpb2, domain 2; (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6; (InterPro:IPR007120); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase, beta subunit; (InterPro:IPR007121) -0.498672617690991 -5.06729134932649 0.000834096353816564 1 6.53682133061786 19.0054700339160 -0.498672617690991 0.103548159711302
AT3G49940_at 4.86020963421455 5.72245168432203 4.45084794311891 4.02819471659731 4.99237614096362 5.60470599470082 6.37506954836682 6.50945937429682 5.85326129840699 6.45762287268246 6.60082587287093 6.94243156253952 5.36316767052114 5.8828325898306 6.53941404829153 4.9373071454243 5.41068204057285 6.26927150442364 7.01695024489251 0.266076217308044 0.253356208100513 0.257138071393048 0.252167248825308 0.254431575832003 0.254970482808391 0.254576810500707 0.255100080437573 0.251383768240199 0.260288212211296 0.264263115448369 0.254437003001202 0.251383768240199 0.252304094045701 0.259340436966330 0.260471592645897 0.256448163788899 0.257316861559142 0.259124301364052 3 3 + 18525727 18526210 18525999.182 18525328 18526460 + gene protein_coding_gene FALSE TRUE AT3G49940.1 LOB domain protein 38 / lateral organ boundaries domain protein 38 (LBD38) Identical to LOB domain-containing protein 38 (LBD38) [Arabidopsis Thaliana] (GB:Q9SN23;GB:Q8LDW4); similar to LOB domain protein 37 / lateral organ boundaries domain protein 37 (LBD37) [Arabidopsis thaliana] (TAIR:AT5G67420.1); similar to Protein of unknown function DUF260 [Medicago truncatula] (GB:ABE82505.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883) -0.773568139569782 -5.06406049300961 0.000837571319206067 1 6.53326018813721 11.5358408927243 -0.773568139569782 0.198455718628701
AT2G44860_at 8.23949123676596 8.17936882887015 7.92223617080407 7.95016731326008 7.80955065708477 7.57764874784908 7.9807679315806 7.88969412161412 6.7113706589441 7.02643330478062 6.36638744325407 6.85980178474274 6.58920954725064 5.93995256845142 6.7495180102066 6.51947530521147 6.66792105397869 6.26232189383205 7.231611583888 0.181040017053154 0.174250206024378 0.176174726709376 0.177971749636367 0.178109576462297 0.180757748251456 0.181387361247234 0.177702747001556 0.180821349864193 0.179847238427385 0.179423702735013 0.179736047834422 0.177906695313215 0.180923117815949 0.174250206024378 0.174250206024378 0.197317976244987 0.188387255324653 0.179798948102065 2 2|0 -|/ 18508159 18509158 18508655.5 18507878 18509633 - gene protein_coding_gene FALSE TRUE AT2G44860.1|AT2G44860.2 60S ribosomal protein L24, putative Identical to Probable ribosome biogenesis protein RLP24 [Arabidopsis Thaliana] (GB:O22165); similar to STV1 (SHORT VALVE1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G53020.1); similar to Os07g0292800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059399.1); similar to Os01g0514000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043187.1); similar to ribosome biogenesis protein RLP24, probable (IC) [Ostreococcus tauri] (GB:CAL52012.1); contains InterPro domain TRASH; (InterPro:IPR011017); contains InterPro domain Ribosomal protein L24E; (InterPro:IPR000988) -0.37645576956491 -5.06405908718995 0.000837572834661964 1 6.53325863819435 14.6856799426804 -0.37645576956491 0.0446158239491836
AT3G13810_at 8.4981433142896 8.44380790683008 8.90744850983219 8.96882494048366 9.18303612973523 9.19019291836876 7.83591763522023 7.91231114416235 7.41516733549255 5.99439622430562 6.5753292400711 6.19098150717033 7.08986963999956 6.92280223972651 5.91030491392957 6.79493394749681 7.14241025998481 6.3650152022834 7.03797564794706 0.171689581680800 0.170225522344545 0.172271714993878 0.170452588985498 0.172636647123178 0.171909548480219 0.171759087855513 0.170574671370490 0.190977935863908 0.182019558447681 0.171248195221555 0.172415749665039 0.184013625842673 0.173111512719469 0.174883792899485 0.176063825861373 0.177101467342745 0.196672222166529 0.170225522344545 3 3 + 4546729 4547278 4547008.727 4544497 4547417 + gene protein_coding_gene FALSE TRUE AT3G13810.1 ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11); nucleic acid binding / transcription factor/ zinc ion binding similar to ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 7/ATIDD7, nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G55110.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE79766.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.348970045365208 5.05909384019038 0.00084294393865941 1 6.52778214392783 15.3373614480725 0.348970045365208 0.0194304174942571
AT1G79750_at 8.77058542967504 8.75437086905108 8.15831678284356 8.35543099511625 8.15042406198858 8.2268642748688 8.72226563233905 9.12915306533357 8.88013836513426 9.10569271520736 9.27589002929663 9.1651132127712 8.69744474957515 8.4293581431928 8.80459858271151 8.8973848030086 8.0899595030738 8.51780085915368 8.99693855050606 0.154322307950890 0.156219461356335 0.157086844922069 0.153324079576465 0.151406332065377 0.153346498190501 0.153857163113061 0.157006501396772 0.179689941359418 0.14489358408801 0.14489358408801 0.147540283559886 0.150729656282730 0.155344842831108 0.151624176524247 0.14489358408801 0.189065142104104 0.156603806394210 0.151901442689422 1 1|0 -|/ 30012557 30013270 30012890.5 30012219 30016282 - gene protein_coding_gene FALSE TRUE AT1G79750.1 ATNADP-ME4 (NADP-MALIC ENZYME 4); malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed. similar to ATNADP-ME3 (NADP-MALIC ENZYME 3), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G25880.1); similar to ATNADP-ME2 (NADP-MALIC ENZYME 2), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G11670.1); similar to ATNADP-ME1 (NADP-MALIC ENZYME 1), malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+)/ malic enzyme/ oxidoreductase, acting on NADH or NADPH, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT2G19900.1); similar to malate dehydrogenase [Vitis vinifera] (GB:AAB08874.1); similar to NADP-dependent malic protein [Ricinus communis] (GB:AAF73006.1); similar to NADP-malic enzyme [Lycopersicon esculentum] (GB:AAB58727.1); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) -0.440448764331684 -5.05871776544723 0.000843352275161405 1 6.52736716614506 17.3979015283839 -0.440448764331684 0.0794012466480382
AT3G02920_at 6.4255789397536 6.55544139370643 5.66134342044932 5.51713348380958 6.0563417674043 5.88739674244327 6.10490433610409 6.11884731075391 5.37319271406348 5.12309407780515 4.72827142892213 5.14099032234105 4.96406011709211 5.09060056082696 5.52171884882684 4.98211329655792 4.72011585721358 5.04036156317584 5.26822112019063 0.210513358633927 0.209930421609513 0.205630610527753 0.205980789367709 0.199605945963133 0.202463533619860 0.205569693261400 0.208479091658279 0.209484905652860 0.199170960847762 0.197349422665979 0.198565270580052 0.202079569358347 0.202545718245343 0.197349422665979 0.197349422665979 0.213484986947822 0.215631020807962 0.198377607492140 3 0|3 /|- 651857 652857 652342 651680 654357 - gene protein_coding_gene FALSE TRUE AT3G02920.1 replication protein-related similar to ATRPA2/ROR1/RPA2 (REPLICON PROTEIN A), protein binding [Arabidopsis thaliana] (TAIR:AT2G24490.1); similar to putative replication factor A [Capsicum chinense] (GB:CAJ13715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.375973056434879 -5.05802384493979 0.000844106288106575 1 6.52660139634327 11.1800559093310 -0.375973056434879 0.0445922584688314
AT4G30080_at 5.93055478830782 6.1979719506951 6.42219266561276 6.21117211282171 6.62224657947101 6.66895403331615 5.58332924943987 4.70425134539013 4.40440509338497 5.13338447501153 5.24102037186191 5.52639938791624 5.38618731910155 5.58435886177775 4.89732137195756 5.85426515492002 5.93678134853301 4.63143887347879 5.25333254902306 0.197692826466951 0.203426211963609 0.197871534834241 0.201529109346283 0.194476358747862 0.205688889094048 0.205499661142009 0.209356363604541 0.213802398556776 0.196797816924833 0.199476100570034 0.194476358747862 0.199080738622740 0.203978864080267 0.201340803251856 0.194557860112606 0.206328501573781 0.205658897704914 0.202197168206094 4 4 - 14703569 14704021 14703801.455 14703207 14706342 - gene protein_coding_gene FALSE TRUE AT4G30080.1 ARF16 (AUXIN RESPONSE FACTOR 16); miRNA binding / transcription factor Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. Identical to Auxin response factor 16 (ARF16) [Arabidopsis Thaliana] (GB:Q93YR9;GB:Q9SZW1); similar to ARF10 (AUXIN RESPONSE FACTOR 10), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G28350.1); similar to Auxin response factor 16, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54297.2); similar to putative auxin response factor 10 [Oryza sativa (japonica cultivar-group)] (GB:BAD23727.1); similar to auxin response factor 10 [Oryza sativa] (GB:BAB85919.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.664481030700338 5.05401675523479 0.000848474733969801 1 6.52217771553612 11.1988819032984 0.664481030700338 0.163351242700384
AT2G30710_at 6.1107783479251 6.5248299409011 6.03365816879771 6.25890371946976 7.06331662837465 6.78422106604655 5.96849978527068 5.85681701347087 5.34253138767846 4.78920440207007 5.90882436976988 5.66396419592964 5.33558746349666 5.59762033071279 5.53909752904181 5.70684873165774 5.74602656026007 5.23436118659689 5.02180943430373 0.191831932793041 0.198168775244201 0.191136693857672 0.187996429917229 0.192823250592992 0.200678930659807 0.191689992285051 0.197058231801339 0.191366704422733 0.200637819168752 0.190666056224024 0.194678236218687 0.204293543773566 0.195335433659660 0.200052834527772 0.19333084739283 0.196022029379258 0.197009901034857 0.192906282427074 2 2|0 -|/ 13093309 13094433 13093868.111 13092963 13096338 - gene protein_coding_gene FALSE TRUE AT2G30710.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04830.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE91477.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.480076589181331 5.05041727405519 0.00085241975533311 1 6.5182015591235 11.6464896024240 0.480076589181331 0.0967469452437367
AT3G55170_at 5.21980062323207 4.92147280701836 5.27496225772624 5.18078361978193 5.59343109572699 5.62703916802257 5.18553194117463 5.08044981663015 4.58988896797827 4.80524691677723 5.36972694531415 5.39427604741752 5.10518215440005 5.39434365589084 5.54406527359308 5.13740684709674 5.15163964125518 5.36153848690643 5.10296572792901 0.170816519954297 0.168242478396443 0.164407814423551 0.170635372026445 0.167237658311818 0.166813856118748 0.166191824019409 0.169151702909013 0.201336622369189 0.171455463793126 0.169238576854864 0.173368600208812 0.166057944574051 0.172191399703893 0.172915282742807 0.171201320221190 0.170725049443425 0.166010678009852 0.174151820799608 3 3|0 -|/ 20464120 20465111 20464389.375 20463887 20465319 - gene protein_coding_gene FALSE TRUE AT3G55170.1|AT3G55170.2 60S ribosomal protein L35 (RPL35C) Identical to 60S ribosomal protein L35-3 (RPL35C) [Arabidopsis Thaliana] (GB:Q9M3D2); similar to 60S ribosomal protein L35 (RPL35A) [Arabidopsis thaliana] (TAIR:AT3G09500.1); similar to similar to 60S ribosomal protein L35 [Solanum lycopersicum] (GB:BAD95794.1); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) 0.395906041111688 5.04935567753708 0.000853587063296384 1 6.51702842487018 10.330420375687 0.395906041111688 0.0574063970405497
AT3G14220_at 6.71773923077984 6.97075555945784 5.35070322541018 5.6925755105462 6.17796836098745 6.26791807412804 6.49595825266358 6.92130121584425 6.90618967547713 7.01851187776417 7.0669198088244 7.87198842100345 6.8641643188312 6.84608291990866 7.51006867314621 6.46950000027387 6.2481362758139 6.9603502298944 7.30366795278945 0.170535344668333 0.168764183978993 0.173169798585151 0.172226829352993 0.166663327481023 0.177784898595686 0.179344128588416 0.168380650223193 0.171880226204149 0.163817023163299 0.163817023163299 0.170923598705487 0.166276258665826 0.177013406099855 0.173673709555958 0.165516937035097 0.173786938275687 0.164508897623936 0.167715290700597 3 3 + 4733719 4734454 4734125.818 4732900 4734616 + gene protein_coding_gene FALSE TRUE AT3G14220.1 GDSL-motif lipase/hydrolase family protein similar to ESM1 (EPITHIOSPECIFIER MODIFIER 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G14210.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.50030955481666 -5.0400549437058 0.000863888498616963 1 6.50674183522696 13.3522521785466 -0.50030955481666 0.105251031209651
AT4G03390_at 5.98845207723947 6.65577479276939 6.00785943861063 6.34609723628316 7.23871245431241 7.42389484942238 5.9932016874948 5.98336490073965 7.63330226690648 6.92506606705477 8.27774590343319 7.90149361409867 7.93297187323535 8.17156235122206 7.83720704112355 7.45770194793055 7.5734029203757 7.32410687053037 7.21227067348533 0.210598635508256 0.195460209516734 0.199143909501371 0.203770803247774 0.194163785763905 0.206124874715312 0.195605409706570 0.203335727279911 0.200208507181237 0.196323432067364 0.194147277683017 0.192342267943424 0.189039147745520 0.193880757235996 0.198109577380999 0.198282862382062 0.224369715614816 0.204681040547569 0.196813607403866 4 4|0 -|/ 1490912 1491819 1491503 1490464 1495102 - gene protein_coding_gene FALSE TRUE AT4G03390.1 leucine-rich repeat transmembrane protein kinase, putative similar to SRF1, kinase [Arabidopsis thaliana] (TAIR:AT2G20850.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); similar to Os02g0176100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046061.1); similar to Os02g0190500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046150.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.575793513095568 5.04004472660184 0.0008638998889917 1 6.50673052658004 13.9878715468053 0.575793513095568 0.133388408290927
AT3G11820_at 8.60028266945608 8.64475179236571 8.81665309163926 8.90464109100706 8.32801010254058 8.10393558890107 7.10997645107952 6.8878187277114 8.50655694380616 7.36423290524754 7.8724040619177 8.2682297825606 7.05720716146616 8.11051150940873 7.40627440491401 7.46977492984775 7.30632930958867 8.15287120108182 7.06004615271706 0.141711914675664 0.146106791143291 0.139498425471516 0.145155788595809 0.140629406608566 0.139487725255323 0.143383300370976 0.145073124679280 0.140489273938950 0.141173438311329 0.143153576201759 0.142860402823309 0.144937296041844 0.145746437715145 0.146316482241411 0.139943621988841 0.148346836041949 0.142872251723355 0.153657569986422 3 3 - 3729572 3730385 3729909.818 3729311 3731155 - gene protein_coding_gene FALSE TRUE AT3G11820.1|AT3G11820.2 SYP121 (syntaxin 121); t-SNARE Encodes plasma membrane syntaxin, which is a member of SNARE superfamily of proteins. PEN1 is one of the known factors of non-host resistance against barley powdery mildew, Blumeria graminis sp. hordei. However, PEN1 is a nonessential component of the preinvasive resistance against Colletotrichum fungus even though there is a appresorium differentiation and melanization. Required for mlo resistance. Identical to Syntaxin-121 (AtSYP121) (Syntaxin-related protein At-Syr1) (SYP121) [Arabidopsis Thaliana] (GB:Q9ZSD4); similar to SYP122 (syntaxin 122), t-SNARE [Arabidopsis thaliana] (TAIR:AT3G52400.1); similar to syntaxin-related protein Nt-syr1 [Nicotiana tabacum] (GB:AAD11808.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.394720426438372 5.03866678329296 0.000865437562385317 1 6.5052051988492 15.8490398371818 0.394720426438372 0.0572083312551548
AT2G30590_at 5.89637367497474 6.28493104105288 6.24884619941947 6.54071119190537 6.40841740173906 6.3920604466909 5.45605674071958 5.42467049485409 6.35594114483631 5.27021312617503 6.66950673891686 5.96336091112113 6.10892228010434 6.20376421566981 5.77437787877827 5.35704109158257 5.96186448807961 6.1405873014318 5.64088849493197 0.206877244073826 0.199755270390927 0.220826102674602 0.207919037051584 0.202843249767547 0.203897098815365 0.199116048060761 0.217759966128154 0.21007725032138 0.215934609953491 0.197904211261905 0.202953926027808 0.204091522557147 0.205145429060947 0.209231215148031 0.200903097495705 0.213748885631645 0.204804482413329 0.207931935938351 2 2|0 +|/ 13041514 13042345 13041875.3 13040553 13042670 + gene protein_coding_gene FALSE TRUE AT2G30590.1 WRKY21 (WRKY DNA-binding protein 21); transcription factor Encodes WRKY DNA-binding protein 21 (WRKY21). Identical to Probable WRKY transcription factor 21 (WRKY DNA-binding protein 21) (WRKY21) [Arabidopsis Thaliana] (GB:O04336); similar to WRKY74 (WRKY DNA-binding protein 74), transcription factor [Arabidopsis thaliana] (TAIR:AT5G28650.1); similar to WRKY DNA binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99243.1); similar to Os12g0597700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067197.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.449374006633912 5.03539454358839 0.000869101040987837 1 6.50158159271002 11.9705629165153 0.449374006633912 0.0843212551093356
AT2G22690_at 6.04076025411049 5.88316301077244 6.0744663267119 5.98030168975909 6.47755856980414 6.66476425058842 4.84094935972719 5.40755535008856 5.18083674055362 4.81594736870207 4.82806118352106 4.753041684345 4.81368409200949 5.23004493147082 4.91326610996393 5.21312691408419 5.76922686250083 5.50895513046245 4.61609180871809 0.231369362016242 0.230207760484574 0.231960054260509 0.235429909524063 0.230207760484574 0.230207760484574 0.232435813565621 0.235643752896743 0.239418031906924 0.234689703145758 0.234240833457433 0.232847789793415 0.233843546075691 0.230207760484574 0.232328977480353 0.230905230987773 0.245002971952701 0.231319239353025 0.233176092688931 2 2 - 9656998 9657356 9657190.909 9656770 9658519 - gene protein_coding_gene FALSE TRUE AT2G22690.1|AT2G22690.2 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to Zinc finger, RING-type; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE86823.1); similar to Os06g0588900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057959.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.506941469880675 5.03490303752899 0.000869652766300984 1 6.5010371433315 10.9210071028799 0.506941469880675 0.108043805372788
AT4G25900_at 9.75978809328117 10.1431805341540 10.4871925583013 10.5248925746991 10.3230949241371 9.9641109130876 8.76449276546686 8.88519215226786 8.28165495909447 8.18681875933935 8.01471170254096 8.62261198155744 8.2725340252026 8.68988669190793 7.7909830081539 8.2291217535024 7.90670155406721 8.14112960253573 8.14371404903113 0.242870718079930 0.238579785206707 0.247767321006817 0.240404495694762 0.239394205322002 0.245422037219683 0.236432317641249 0.233207498558592 0.236585166723981 0.241536489036072 0.232152851243022 0.227789598402731 0.229495167204934 0.229946223192565 0.232736553141845 0.228764492585772 0.233149184404378 0.235864240932227 0.23302558913067 4 4|0 +|/ 13162420 13163366 13162910.333 13161355 13163645 + gene protein_coding_gene FALSE TRUE AT4G25900.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G57330.1); similar to Os04g0658000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054126.1); similar to Putative apospory-associated protein C (GB:Q40784); similar to OSIGBa0132E09-OSIGBa0108L24.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67787.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.470528403521166 5.03284276947259 0.000871969600377826 1 6.49875447743719 18.0627543789686 0.470528403521166 0.0934893953831747
AT3G13000_at 4.23935020264973 4.16814529482649 2.85793521658668 2.98943990779785 3.85153193020745 4.25474208746941 5.26634065440771 4.77011299965795 6.33349481605056 5.55342944052784 7.41904648062964 6.81603211731771 5.89115528238813 6.88150850089487 6.31285187321527 6.30852640277984 4.6602009833224 5.93710680189949 6.70789095902157 0.245130530684044 0.248005087337477 0.254148203220199 0.273835857053980 0.249326865129879 0.249181072656697 0.242951575368110 0.246058543950330 0.245988765054999 0.250680660349051 0.25423196983747 0.24285683465271 0.249481910911762 0.248188429119739 0.251190488384066 0.248244603100978 0.251103076633873 0.250007497523184 0.251091758316128 3 0|3 /|- 4158283 4158878 4158579.75 4157974 4162072 - gene protein_coding_gene FALSE TRUE AT3G13000.1|AT3G13000.2 transcription factor| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16750.1); similar to Os06g0704100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058505.1); similar to Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE81403.1); similar to Os06g0692800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058429.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.521271592798763 -5.03276644149916 0.00087205556216669 1 6.49866989548769 10.2879874336200 -0.521271592798763 0.113635648773476
AT2G17720_at 8.49790926651714 8.60731422030605 9.01705279836074 8.98501791198413 8.51871374527109 8.08648763649806 7.14673263438963 6.86459116335635 6.99507506574035 6.41060994232688 6.62059583569005 6.68904180083805 6.25047390270762 6.48134071446853 6.81588669867984 6.30420222832208 6.87766678956584 6.47436941971595 6.11261791678449 0.226832808879105 0.223735881401203 0.223659366341349 0.22441978787681 0.219146068459874 0.231654895027402 0.219146068459874 0.219652018578394 0.237137897938440 0.224272256840868 0.220783015962476 0.219146068459874 0.221651643609044 0.219541539964491 0.232506632985152 0.219146068459874 0.22352194568926 0.241034766041171 0.229065894766523 2 2|0 +|/ 7705281 7706225 7705894.25 7704418 7706650 + gene protein_coding_gene FALSE TRUE AT2G17720.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G35810.1); similar to 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE81866.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.465388700342066 5.02912963164081 0.000876162080472827 1 6.49463859227523 14.7506264964349 0.465388700342066 0.091476848610373
AT1G21060_at 4.46956578232192 5.01183571302224 3.87850791009463 3.63356486734225 5.32059792899807 4.16073591365207 5.63776018912023 5.43003228255446 6.21052798665439 5.54596656968898 5.81131014603706 5.54209334039126 4.87326949517103 5.197789304562 4.57709558994913 4.90456875252496 4.39442492621311 5.06297506381087 5.8887953327441 0.18651357772451 0.190836459520469 0.193926123739632 0.195183966330683 0.197168674090118 0.185525643764961 0.189387195736668 0.195037486362131 0.204842342902934 0.187885316581273 0.190262814120481 0.184937383521818 0.189807641947267 0.190054905767268 0.186426979135918 0.193473470433460 0.191393256221349 0.197314486450128 0.188261877060881 1 1|0 +|/ 7373229 7373922 7373603 7371788 7374093 + gene protein_coding_gene FALSE TRUE AT1G21060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76620.1); similar to Os09g0493400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063544.1); similar to Os08g0515700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062234.1); similar to putative ternary complex factor MIP1 [Antirrhinum majus] (GB:AAO59425.1); contains InterPro domain Protein of unknown function DUF547; (InterPro:IPR006869) -0.862634652881512 -5.02843081168656 0.0008769535583744 1 6.49386369705147 10.1564271352357 -0.862634652881512 0.228437698483992
AT1G55680_at 9.30070006240256 9.34336890644345 9.60966119030832 9.73816974708625 9.96774878826583 9.85459256564744 9.44326347326967 9.53241537946075 9.103232366938 8.78714764101924 9.37376034464512 9.12557954370864 9.30917824219674 9.33066518153036 8.83502067572452 9.35774305078265 9.46201468318782 9.13776777448516 8.83485523252152 0.109072978488199 0.109072978488199 0.112010620588274 0.111071607650222 0.109632418208691 0.112229303532246 0.112469214687536 0.111779544475001 0.118873599923288 0.112363610576102 0.109257267466820 0.109072978488199 0.112822066937281 0.109072978488199 0.115211978657341 0.109072978488199 0.112540193131603 0.119285001923489 0.112184507008683 1 1|0 -|/ 20808659 20809434 20808926.1 20808258 20811606 - gene protein_coding_gene FALSE TRUE AT1G55680.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G56190.2); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G13340.1); similar to Os08g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062140.1); similar to Os02g0721600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047961.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE85775.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.360330278819612 5.02804347577579 0.000877392586334639 1 6.49343415693746 18.6736789810400 0.360330278819612 0.0342138622416563
AT2G28720_at 9.5895854267236 9.74916104126049 9.66066858215731 9.83106830733912 9.99914404940249 9.86410957151632 9.61618965566505 9.72046375384258 9.15469683380658 9.24155377522816 9.7868915606734 9.82960079732648 9.85151229056114 9.84522999451806 9.5809384962353 9.82010091100018 9.74773703847828 9.47547617665596 9.05137765921324 0.0931060578848503 0.0888108188390223 0.0941932475029695 0.0927623866800975 0.0902315607673016 0.0942335112760646 0.0923413896673658 0.0889873834214243 0.0948178481556007 0.0902424751022873 0.0914211254376394 0.0888108188390223 0.0923324153255803 0.0921366471430035 0.0896835916077964 0.0888108188390223 0.0935313956835736 0.0981893572734493 0.0904932351756445 2 2 + 12334143 12334537 12334367.636 12334055 12334755 + gene protein_coding_gene FALSE TRUE AT2G28720.1 histone H2B, putative Identical to Histone H2B.3 (HTB3) [Arabidopsis Thaliana] (GB:Q9SI96); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT5G59910.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) 0.381437071831326 5.02121187500365 0.000885175256318734 1 6.48585374511475 19.1994964639536 0.381437071831326 0.0500387914614503
AT4G30660_at 10.2109791747827 10.7444968998783 8.67161098419464 9.38696025703907 10.3604067811245 9.7605115347775 9.29612919572339 9.36068888410249 8.91820568947071 9.03926883599525 11.1085711217082 11.40646236857 10.7363903316228 10.9330884722764 11.2377557000820 10.6315700040679 9.64147524489707 10.3927181978192 8.8722467221227 0.155588696649417 0.159112562926828 0.172944049990741 0.171515765584368 0.162997528112109 0.157084467076987 0.159147427092531 0.159169575305328 0.186389846182035 0.162183325491873 0.15812273042076 0.160064063302752 0.155588696649417 0.161129680113855 0.156570129057967 0.158536045154647 0.169528657744467 0.161674572916138 0.176489287633090 4 4|0 +|/ 14955476 14955896 14955716.8 14955379 14956124 + gene protein_coding_gene FALSE TRUE AT4G30660.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At4g30660 [Arabidopsis Thaliana] (GB:Q9SUI0); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G24040.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABE78792.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 0.729781182464888 5.02066427108186 0.000885802332806768 1 6.48524575467039 19.5760951369495 0.729781182464888 0.186418352734313
AT2G37480_at 8.12447848213287 8.51632719241861 8.14836740049655 8.15106123936076 9.14834573634134 8.55327137524906 8.06424843070492 7.79788403074806 7.52238728166434 7.22791583543342 8.20160173976998 8.21140606536633 8.19099302630597 8.2183422535251 7.96704159759808 8.33570975902844 7.95208296199498 7.59172553657787 7.21222741721575 0.134267044980413 0.129344720499610 0.139924032561062 0.132627820871252 0.133139102393932 0.133751926333425 0.13615373341912 0.13200472391205 0.138549569702511 0.138594589326494 0.130074862092619 0.12902578617506 0.128726935165668 0.131515283720733 0.133467623681476 0.128973350802554 0.144938221682332 0.131763507872362 0.136040502368436 2 2|0 +|/ 15745250 15746579 15745686.952 15744938 15746926 + gene protein_coding_gene FALSE TRUE AT2G37480.1|AT2G37480.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53670.1); similar to hypothetical protein MtrDRAFT_AC125368g26v1 [Medicago truncatula] (GB:ABE93949.1); similar to hypothetical protein MtrDRAFT_AC135797g8v1 [Medicago truncatula] (GB:ABE82095.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.568648129971911 5.02018948913648 0.00088634640923039 1 6.48471857288278 16.0152261754109 0.568648129971911 0.131637184948752
AT4G37980_at 8.55065882383722 8.52177352138549 7.69306480477241 7.80662979989621 7.77738353348916 7.70424272182055 8.90512975685336 8.85171497890311 9.02542870466884 9.28103828986342 9.52086240602122 9.75812781397865 10.0313813538428 9.53328035785759 9.21266551181463 10.0435461332318 9.1529396425737 9.34849759902867 9.63778186769595 0.142054423927715 0.138890681798666 0.146520855975406 0.145813805767570 0.145684726128881 0.140426603584801 0.137601895601386 0.134706050742223 0.146519954398801 0.136960501583199 0.140759292800446 0.13757204930228 0.149219132626873 0.141030969810660 0.141297637223946 0.140391593379685 0.137147564181988 0.142850345573357 0.139732062123073 4 4|0 +|/ 17853512 17854271 17853892.8 17852435 17854494 + gene protein_coding_gene FALSE TRUE AT4G37980.1|AT4G37980.2 ELI3-1 (ELICITOR-ACTIVATED GENE 3); oxidoreductase/ zinc ion binding Encodes a putative mannitol dehydrogenase. Identical to Probable mannitol dehydrogenase 1 (EC 1.1.1.255) (NAD-dependent mannitol dehydrogenase 1) (ELI3-1) [Arabidopsis Thaliana] (GB:Q02971;GB:Q9SZJ9); similar to ELI3-2 (ELICITOR-ACTIVATED GENE 3) [Arabidopsis thaliana] (TAIR:AT4G37990.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:Q9ZRF1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154)|similar to ELI3-2 (ELICITOR-ACTIVATED GENE 3) [Arabidopsis thaliana] (TAIR:AT4G37990.1); similar to Probable mannitol dehydrogenase (NAD-dependent mannitol dehydrogenase) (GB:Q9ZRF1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.350788036849656 -5.0158146839259 0.000891376827664397 1 6.4798590273569 17.6712808541379 -0.350788036849656 0.0256296736072113
AT1G60600_at 6.57285328246618 6.50898767013519 4.64620003202343 4.15698743741124 6.9031274706013 6.11350709107081 6.64412389559316 6.25593215493859 6.5062152390969 6.20757593003086 5.82076976186271 6.62138631933909 5.25666017376309 5.3898377247216 7.00485144449383 5.83387390198718 5.50392901323161 5.67354017198580 5.9869826962428 0.271294411438627 0.260058756577213 0.264914449956166 0.268637967404064 0.254302909656298 0.263481903748857 0.257794895976700 0.264547995235196 0.267722915991510 0.254302909656298 0.254635052041420 0.261311308687049 0.258001326109552 0.270303461558019 0.262259872330866 0.256812402535114 0.281114033890394 0.260900048874382 0.266444031780192 1 1|0 -|/ 22328515 22329462 22329156.556 22328310 22331024 - gene protein_coding_gene FALSE TRUE AT1G60600.1 ABC4 (ABERRANT CHLOROPLAST DEVELOPMENT 4); 1,4-dihydroxy-2-naphthoate octaprenyltransferase/ prenyltransferase Encodes a protein similar to 1,4-dihydroxy-2-naphthoic acid phytyltransferase involved in phylloquinone and plastoquinone biosynthesis. Mutants are pale green and heterotrophic with defects in photosynthetic electron transport. similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN64152.1); similar to Os03g0190100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049226.1); contains InterPro domain 1,4-dihydroxy-2-naphthoate phytyltransferase; (InterPro:IPR011937); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) -0.69300198377016 -5.01550484564395 0.000891734272257307 1 6.47951472746623 12.0360635554700 -0.69300198377016 0.174570984026369
AT1G04250_at 6.65023444717538 6.98310950604432 7.23265620188087 7.6909970617729 7.17160646741346 7.70888205224644 9.2220791749756 9.27691417835095 6.10568607777318 8.72473163926096 9.26989705678639 9.28864412066087 9.6761263522229 9.3462041825526 9.2843942894723 9.56138589070732 9.57203448504565 9.53483302961528 8.27680719557825 0.223372707966803 0.211356327170016 0.221669024118483 0.210459325308869 0.215416293306132 0.212342921536961 0.196720867950568 0.197989717058877 0.246202758496883 0.200321733932248 0.201863369413271 0.198240165328653 0.196605891918652 0.199026139768345 0.201813980309047 0.196605891918652 0.205561206796792 0.209267539078318 0.201662812309271 1 1|0 +|/ 1136552 1137567 1137052.125 1136257 1138612 + gene protein_coding_gene FALSE TRUE AT1G04250.1 AXR3 (AUXIN RESISTANT 3); transcription factor Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Identical to Auxin-responsive protein IAA17 (Indoleacetic acid-induced protein 17) (Auxin response 3) (IAA17) [Arabidopsis Thaliana] (GB:P93830;GB:O49162); similar to IAA14 (SOLITARY ROOT), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14550.1); similar to auxin-regulated protein [Populus tremula x Populus tremuloides] (GB:AAM21317.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.578616370435317 5.01448299914915 0.000892914227751614 1 6.47837910407456 16.314109001276 0.578616370435317 0.13544267625509
AT1G70370_at 9.1914611207687 9.59224054806621 8.55618556804408 8.63159807060078 8.98469376374412 8.80255408052193 9.8333241958695 10.0162753894847 9.56819902655489 9.44830845595185 9.84259078219474 10.1889998440277 9.24019975572669 9.48273386282294 10.0235402999679 9.11773123788503 8.68260676420163 9.35969446236114 9.38992990198422 0.133934756224862 0.128006684625661 0.13590855447257 0.135648718691378 0.127137564100569 0.143790095354012 0.133990080654516 0.130240978439918 0.144597963387888 0.139611123677551 0.138490101185891 0.134874478575144 0.129577275324715 0.132606364421852 0.129830212069648 0.129461725566672 0.127716596858176 0.133410543712744 0.126781838251376 1 1 - 26516668 26517183 26516887.455 26516385 26518851 - gene protein_coding_gene FALSE TRUE AT1G70370.1 BURP domain-containing protein / polygalacturonase, putative Identical to Probable polygalacturonase non-catalytic subunit JP650 precursor (Aromatic-rich glycoprotein JP650) (JP650) [Arabidopsis Thaliana] (GB:P92990;GB:O64599;GB:Q8H7B8;GB:Q93ZQ4); similar to JP630, polygalacturonase [Arabidopsis thaliana] (TAIR:AT1G23760.1); similar to BURP domain-containing protein / polygalacturonase, putative [Arabidopsis thaliana] (TAIR:AT1G60390.1); similar to Polygalacturonase-1 non-catalytic subunit beta precursor (AroGP1) (Polygalacturonase converter) (PG converter) (GB:Q40161); similar to polygalacturonase isoenzyme 1 beta subunit homolog (GB:AAB39546.1); similar to Polygalacturonase non-catalytic subunit AroGP2 precursor (GB:P93217); contains InterPro domain BURP; (InterPro:IPR004873) -0.445558889084027 -5.01269107608327 0.00089498750763196 1 6.47638720636264 18.6815788859602 -0.445558889084027 0.0835259406572299
AT4G15800_at 8.20718563040504 8.48525118730127 8.1341994346855 8.39736627575507 8.07198636383717 7.83265216962827 9.39480374693692 9.76572187095824 9.88145763616522 9.05791795061489 10.1196960265400 9.27509691052675 9.87380233698473 9.86870648698185 8.82013707196776 9.01519210794725 8.56115787212528 9.32704016623424 9.49363679504323 0.159412972676174 0.149204745594305 0.170234812790940 0.158101788520695 0.152499204426089 0.169142279957068 0.156317998705361 0.151322764342184 0.159069419244496 0.153066529498404 0.153758131439594 0.147128279015160 0.146279776764971 0.157008602896190 0.151761715135439 0.146680946108104 0.166129180482903 0.155203023880421 0.150582826575905 4 4 + 8984933 8985244 8985100.455 8984866 8985413 + gene protein_coding_gene FALSE TRUE AT4G15800.1 RALFL33 (RALF-LIKE 33) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL23 (RALF-LIKE 23) [Arabidopsis thaliana] (TAIR:AT3G16570.1); similar to rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAO27366.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.48712835972575 -5.01158520619352 0.000896269622145358 1 6.47515763525862 17.9537830431157 -0.48712835972575 0.101120558221365
AT3G09840_at 11.3139446639193 11.2423429227584 11.6716136430055 11.6693076377327 11.3762550965371 11.3816896991867 10.5590985128128 10.7298166709608 11.0958601551766 10.7988934410210 11.1285183609480 11.0752724144181 11.0507008657560 11.1431414870743 10.7867166784640 11.1201095173422 11.0148615512253 10.9207113508328 10.7451478962222 0.0680665813271949 0.0708723771818549 0.0697400180189802 0.0678348339260062 0.0695741045220825 0.0694570916043846 0.073577874561139 0.0734722223361181 0.0775210445633132 0.0690645841891167 0.068064929089411 0.0677076892850607 0.0706400777985886 0.0689821391249109 0.0723655176016935 0.0679961672727065 0.076934295554999 0.0689796738336093 0.0708978035999288 3 3 + 3022208 3022798 3022479.364 3019345 3023057 + gene protein_coding_gene FALSE TRUE AT3G09840.1 CDC48 (CELL DIVISION CYCLE 48); ATPase Encodes a cell division cycle protein, a member of AAA-type ATPases gene family Identical to Cell division control protein 48 homolog A (AtCDC48a) (CDC48A) [Arabidopsis Thaliana] (GB:P54609); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to putative spindle disassembly related protein CDC48 [Nicotiana tabacum] (GB:ABF59516.1); similar to Cell division cycle protein 48 homolog (GB:Q96372); similar to Cell division cycle protein 48, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53974.2); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase, CDC48; (InterPro:IPR005938); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase VAT, N-terminal; (InterPro:IPR003338); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.356726345310176 5.01113275077971 0.000896794760962708 1 6.47465450525404 22.1979942020629 0.356726345310176 0.0320531395281846
AT1G79520_at 6.38235642519498 6.61158469342304 8.61842718089875 8.87227249285962 8.38066469866225 7.8820173286142 9.16545523951693 8.9129048796732 5.57839583125505 7.2324336368662 6.11471503280914 6.09115605846233 7.54888018918839 6.83196703266801 6.01957378088523 7.62158388196852 8.25346334810547 7.30088530486195 7.00796084098466 0.207899473366481 0.207899473366481 0.211435668893818 0.215433009184404 0.220665935291448 0.218072411784405 0.225529137184621 0.207899473366481 0.235501625214635 0.210532149031792 0.214708282175139 0.214502252354490 0.210503781675913 0.207899473366481 0.216256970118084 0.207899473366481 0.221793979678238 0.214493874758550 0.210315103131127 1 1|0 -|/ 29917328 29917825 29917597.5 29917145 29919507 - gene protein_coding_gene FALSE TRUE AT1G79520.1 cation efflux family protein similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G16310.1); similar to cation diffusion facilitator 9 [Stylosanthes hamata] (GB:AAO38708.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.518392379028331 5.01086735663085 0.000897102944024648 1 6.47435937004653 14.892731124849 0.518392379028331 0.113402171273584
AT3G62660_at 7.97220768637048 8.49844378126673 7.92925927919811 8.49676941330034 9.0878795832148 8.83856418209595 7.7699321398178 8.15383148048265 9.23164072372684 8.06793871157292 9.767722489829 9.24092026761652 9.66449398109528 9.86984363582156 9.07706863670299 9.36942566976286 8.65597823801686 9.30830793286018 8.4639594163074 0.135992177882044 0.134902971905809 0.142920840162528 0.143405875964881 0.133899602783093 0.144034266597509 0.151373063517384 0.14357581474847 0.150377957327529 0.156573959394866 0.133883435042165 0.129903385506461 0.134564899841584 0.134209124661921 0.136635127988688 0.130520690121652 0.140250976485148 0.131166277528519 0.139861301763047 3 3 + 23184933 23185425 23185164.818 23183782 23185738 + gene protein_coding_gene FALSE TRUE AT3G62660.1 GATL7 (Galacturonosyltransferase-like 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL5, transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G02720.2); similar to Glycosyl transferase family 8, putative [Medicago truncatula] (GB:ABE91008.1); similar to Os03g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049861.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.635444082530995 5.00649908990083 0.000902192052691208 1 6.46949975597665 17.3218941383845 0.635444082530995 0.15560771413455
AT4G34215_at 6.16703352656514 6.32951289517804 6.36028363036206 6.33190958125238 6.98720804631796 6.72730723179295 6.1298053775193 5.99449821891661 6.3206458160854 6.17847330634839 6.71824249252546 6.69906257091913 6.64549247815637 6.73545150356814 6.60932208200889 6.4739147028614 5.96732700432608 6.63967748162444 6.16249714532043 0.152963114082205 0.157595408057124 0.158768272920353 0.156823830605134 0.150549199382289 0.177529144612415 0.154678352941447 0.160803725305273 0.166818621116055 0.168351112364506 0.157840658172871 0.161048816629266 0.156897685510362 0.153774191676589 0.152093732183925 0.150389964287636 0.179001446652522 0.155261487721391 0.163079071453775 4 4|0 -|/ 16380216 16380973 16380655.9 16379607 16381311 - gene protein_coding_gene FALSE TRUE AT4G34215.1|AT4G34215.2 hydrolase| Encodes a member of the SGNH-hydrolase superfamily of enzymes. The enzymes of the SGNH-hydrolase superfamily facilitate the hydrolysis of ester, thioester and amide bonds in a range of substrates including complex polysaccharides, lysophospholipids, acyl-CoA esters and other compounds. Identical to Probable carbohydrate esterase At4g34215 (EC 3.1.-.-) [Arabidopsis Thaliana] (GB:Q8L9J9;GB:O49483); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53010.1); similar to H0117D06-OSIGBa0088B06.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67955.1); contains InterPro domain Protein of unknown function DUF303, acetylesterase putative; (InterPro:IPR005181) 0.393493575733616 5.00109723052851 0.000908528701490867 1 6.46348553541514 12.7692448361965 0.393493575733616 0.0581888664167276
AT3G17440_at 7.79457027146111 7.85064929661654 8.31808198655887 7.70838673836906 8.82223820202036 8.34772895178436 8.23379881099623 8.09681087055282 7.46677360599213 7.50979834288394 8.70228719987292 8.52270166143699 8.06202593755178 8.64589768959267 8.32703832034873 8.32530653434343 8.00070588000653 8.13153419540881 7.48485244083862 0.180002054313194 0.178959609001106 0.174307859907055 0.173958313321563 0.178882447607406 0.173536841905876 0.176685054844288 0.168238545033096 0.178082567126803 0.176184706650063 0.166054496627594 0.173707933026470 0.170288161737005 0.17262963989544 0.172435069750054 0.166486842133698 0.180810317851751 0.174014561211306 0.1743240018233 3 3|0 -|/ 5969965 5971242 5970473.875 5969570 5972508 - gene protein_coding_gene FALSE TRUE AT3G17440.1|AT3G17440.2 NPSN13 (novel plant SNARE 13) member of NPSN Gene Family Identical to Novel plant SNARE 13 (AtNPSN13) (NPSN13) [Arabidopsis Thaliana] (GB:Q9LRP1); similar to ATNPSN12 (novel plant SNARE 12), protein transporter [Arabidopsis thaliana] (TAIR:AT1G48240.1); similar to Os03g0369800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050195.1); similar to Os07g0637400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060402.1); similar to SNARE 12 [Oryza sativa (japonica cultivar-group)] (GB:AAU94636.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705)|Identical to Novel plant SNARE 13 (AtNPSN13) (NPSN13) [Arabidopsis Thaliana] (GB:Q9LRP1); similar to ATNPSN12 (novel plant SNARE 12), protein transporter [Arabidopsis thaliana] (TAIR:AT1G48240.1); similar to Os03g0369800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050195.1); similar to SNARE 12 [Oryza sativa (japonica cultivar-group)] (GB:AAU94636.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.578848685679245 4.99980447730563 0.000910052319294123 1 6.46204545440829 16.0599474613241 0.578848685679245 0.136131213383715
AT3G52400_at 7.92536080393151 8.18590567951244 7.76939209775026 7.8128997215253 7.2287431514126 7.165313924466 3.28660809512099 4.48632698829543 6.22215195921938 5.12486740845459 5.78036724880514 6.05184854192765 5.57987152785534 6.40011665510561 5.09785199439369 5.2024258154451 5.76859317337638 4.33560174583369 4.95145333990932 0.239255677256316 0.235383415804362 0.225540417548428 0.226104088633804 0.224249946115766 0.232889899508043 0.246473020178585 0.23754332479023 0.224249946115766 0.224249946115766 0.228071363508356 0.229178023593825 0.226159430530407 0.238729090134976 0.229905230687132 0.230705619831830 0.230260676860753 0.238223592198087 0.228573349123107 3 3|0 -|/ 19436816 19437487 19437096.5 19436612 19438119 - gene protein_coding_gene FALSE TRUE AT3G52400.1 SYP122 (syntaxin 122); t-SNARE syntaxin protein Identical to Syntaxin-122 (AtSYP122) (Synt4) (SYP122) [Arabidopsis Thaliana] (GB:Q9SVC2;GB:Q9SUJ2); similar to SYP121 (syntaxin 121), t-SNARE [Arabidopsis thaliana] (TAIR:AT3G11820.1); similar to syntaxin-related protein Nt-syr1 [Nicotiana tabacum] (GB:AAD11808.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.808648592027587 4.99978613063002 0.000910073962337414 1 6.46202501469822 12.2125232196038 0.808648592027587 0.212873080598920
AT1G27000_at 9.22522363702043 9.40109163159302 9.8134836973969 9.76599190818507 9.60425129650594 9.48824398467595 9.52385943261772 9.36020847676778 8.17436779761814 8.77626657130267 9.03503825426455 8.84502038946494 9.04367017506065 8.92004240282058 8.89776648515915 9.09011876565562 9.26390197924188 8.70259800698458 8.59702223687177 0.137599571222895 0.136022457514241 0.141824263795206 0.136553317874764 0.141358246578583 0.150434061768645 0.145464596507944 0.131256517451780 0.158618364203432 0.146800901168257 0.142172043248514 0.142406484426444 0.135575879053587 0.132542389183173 0.142494858933852 0.131256517451780 0.138915649071565 0.142449155437608 0.152039101510879 1 0|1 /|+ 9374876 9376276 9375699.857 9373913 9376707 + gene protein_coding_gene FALSE TRUE AT1G27000.1 bZIP family transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02730.2); similar to bZIP transcription factor bZIP109 [Glycine max] (GB:ABI34660.1); contains InterPro domain Protein of unknown function DUF1664; (InterPro:IPR012458) 0.374640474629264 4.99500031182658 0.00091573878331596 1 6.4566911458596 18.2681218043932 0.374640474629264 0.0468924984844738
AT2G21080_at 5.2890079516768 5.24791878224893 4.51944818103439 4.03434679355985 4.59143720042593 4.71411381294646 4.40795903738402 4.50065951990053 4.53913045190041 4.9701957452783 4.2903603068796 4.68207485388482 4.38009811705915 4.05479334740286 4.84691563762512 4.65528628153676 4.30024765951682 4.41899074631465 5.39132124717662 0.255485904181538 0.24744957805492 0.253986671762758 0.255550563460366 0.247678534089663 0.252255659704185 0.251882822705177 0.260181216798391 0.256799429778582 0.256641720071117 0.25586876724447 0.248958289041611 0.247585328558847 0.247770795714933 0.250846356718710 0.24744957805492 0.250926116065569 0.249977320810881 0.248868776114037 2 2 + 9051435 9052145 9051743.5 9050780 9052421 + gene protein_coding_gene FALSE TRUE AT2G21080.1 similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT3G20300.1); similar to extracellular ligand-gated ion channel [Arabidopsis thaliana] (TAIR:AT1G50630.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55624.1); similar to Os08g0521300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062274.1) -0.454918219242604 -4.99464728635767 0.000916158161542243 1 6.45629753003839 9.37335058501174 -0.454918219242604 0.0883519238047693
AT3G54960_at 9.21946183659897 9.45898296510063 9.76819993755314 9.82907884708416 8.77415219679262 8.31013954335413 7.18612514171132 6.89629521986184 6.6606712390663 6.19721071936374 6.21139161308868 6.91453127449116 6.31162972349956 6.17226142664542 6.39537445179076 6.1271663006575 5.99576865258861 6.09269576106432 5.96257495296246 0.265305867480701 0.259176995779408 0.262022608549161 0.264606528703644 0.260084256344315 0.262689222336805 0.259176995779408 0.261327447542381 0.269600782552891 0.261862172088739 0.259176995779408 0.259176995779408 0.261219683433804 0.264974247379985 0.261531961849549 0.259176995779408 0.264558035880327 0.268303118074983 0.262724566860753 3 0|3 /|- 20374542 20375305 20374789.5 20374287 20377817 - gene protein_coding_gene FALSE TRUE AT3G54960.1 ATPDIL1-3 (PDI-LIKE 1-3); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-4 (PDI-LIKE 1-4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G60640.1); similar to protein disulphide isomerase [Elaeis guineensis] (GB:AAO26314.1); similar to Os02g0100100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045579.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788); contains InterPro domain Protein disulphide isomerase; (InterPro:IPR005792) 0.492146551862621 4.99232024861653 0.000918927798442505 1 6.45370237078373 14.9558484798116 0.492146551862621 0.103888411638064
AT1G32200_at 8.75547476356934 9.15136145983529 7.85814624561267 7.53564743085283 8.42513308898188 8.01353569695658 9.55439102239278 9.29181478679144 9.00947391844053 9.67601640688005 9.59302036585727 9.90028084391543 9.52267872893433 9.31436127967427 9.88723815517444 9.59802295304235 9.14857368112097 9.46917616262191 9.5260910952339 0.16228393158826 0.158664086003347 0.173836115003996 0.172001372364100 0.165103766262224 0.171315174164123 0.158891665114799 0.168798875578468 0.177323006845479 0.160460531298029 0.160014512714829 0.157533928338620 0.157533928338620 0.164567814228013 0.157533928338620 0.158354340929011 0.168928484125365 0.167138828987066 0.158904225880135 1 1 - 11602209 11603237 11602665.091 11601761 11605040 - gene protein_coding_gene FALSE TRUE AT1G32200.1|AT1G32200.2 ATS1 (ACYLTRANSFERASE 1) Encodes a chloroplast glycerol-3-phosphate acyltransferase.Involved in the biosynthesis of chloroplast phosphatidylglycerol. Identical to Glycerol-3-phosphate acyltransferase, chloroplast precursor (EC 2.3.1.15) (GPAT) (ATS1) [Arabidopsis Thaliana] (GB:Q43307;GB:Q9FVR5); similar to glycerol-3-phosphate acyltransferase [Citrus unshiu] (GB:BAB79529.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.539918172385884 -4.9923152352823 0.000918933775107588 1 6.45369677875884 18.0522028092795 -0.539918172385884 0.122256776246933
AT4G14500_at 8.46433434524324 8.61960669725005 8.15094129798652 8.18377190501606 8.10447445717729 8.17417426687935 8.44257250830353 8.58917800080548 8.7187298315132 8.4140752567555 8.45902209631519 8.43344283534424 8.24151518219679 8.23597029862336 7.8717620200128 8.14666714488627 7.83365419898807 8.27581618901345 8.48471613628988 0.128472916387301 0.133898503923923 0.138336193643738 0.132673963712046 0.131185323374740 0.131025415459746 0.135070230853565 0.134018367357714 0.130414340274667 0.135407721641363 0.13353560655201 0.127798714107909 0.131519030208785 0.146886475946039 0.134664909180827 0.131614765586523 0.131141721408633 0.134517480975646 0.129084465030994 4 4 + 8335826 8336989 8336694.818 8334172 8337269 + gene protein_coding_gene FALSE TRUE AT4G14500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23080.1); similar to putative membrane related protein CP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83004.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.363762450991388 -4.99039207623506 0.000921229591932686 1 6.45155129463289 16.7043341784287 -0.363762450991388 0.0392870624690226
AT1G77680_at 5.37634256932787 5.68343102971888 5.71590248637172 5.99038287346634 6.31428279386437 5.84606317661726 5.85926999639443 6.18036050283434 4.7896240156887 4.95546082490575 5.80708736634109 5.81759356074592 5.22608984833913 5.53860611052313 5.69532615755936 5.58531068727374 5.36199241308989 5.75514095165280 4.40310245800514 0.235659856484776 0.226263812134380 0.226263812134380 0.227052308300497 0.239174902608642 0.233652332846599 0.227183470525288 0.228944216977606 0.247789881399141 0.235896646188240 0.226418517853433 0.226263812134380 0.236529620436625 0.245354951045510 0.230226612939931 0.228094237010085 0.243326700738506 0.232708017479668 0.228609317510059 1 1 - 29197742 29198193 29197916.545 29196728 29201181 - gene protein_coding_gene FALSE TRUE AT1G77680.1 ribonuclease II family protein similar to ribonuclease II family protein [Arabidopsis thaliana] (TAIR:AT2G17510.1); similar to Os02g0754100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048152.1); similar to PREDICTED: similar to CG16940-PA, isoform A [Rattus norve (GB:XP_346070.2); contains InterPro domain Calycin-like; (InterPro:IPR011038); contains InterPro domain Ribonuclease II and R; (InterPro:IPR001900) 0.537068881042574 4.98766454855855 0.000924496325689398 1 6.44850731005767 11.0279823384780 0.537068881042574 0.121381721622550
AT3G18890_at 9.04371937106374 8.9480571895381 8.46074874614273 8.39799096179255 8.95532371711328 8.54630985444669 10.3279572376112 10.0181213379796 10.0065193906770 10.1651529100008 10.1293399858847 10.3116214079010 9.84540137850945 10.1136730041411 10.4847373285952 10.1110532023710 9.72391620431402 10.2739604626484 9.978854208111 0.105329235346341 0.103004121918342 0.122991413395663 0.115401058479441 0.104940385834259 0.124065648453961 0.106777997683848 0.103004121918342 0.109476950403281 0.104116371507538 0.103907811328175 0.103449322798130 0.107752502566091 0.105835570330769 0.108399634667892 0.103215272936164 0.109960613267806 0.103712170674753 0.105906722897747 3 0|3 /|+ 6513906 6514559 6514238 6511029 6515000 + gene protein_coding_gene FALSE TRUE AT3G18890.1 catalytic/ coenzyme binding similar to flavin reductase-related [Arabidopsis thaliana] (TAIR:AT2G34460.1); similar to Tic62 protein [Pisum sativum] (GB:CAC87810.2); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.460166547654155 -4.98532769368108 0.00092730515624317 1 6.44589825847287 19.1744727393236 -0.460166547654155 0.0909781165850101
ATCG00730_at 8.07072380812902 8.97391768493429 8.48061235738875 9.15581907246883 7.98596859238791 7.82252388617983 8.9633746567334 9.12329861229976 9.44722579063674 9.57796666711188 8.21211830433615 9.0154201812554 7.95014521205586 8.71785488578714 7.77612913157523 8.89019244746976 7.20203357706482 9.6100224679233 9.54741132671545 0.144636430896780 0.146687753722468 0.143982086695688 0.14182292136446 0.145433230349750 0.145757271964623 0.160104292664873 0.147197528073494 0.143100925251260 0.146527942016453 0.155563569808905 0.150516273623876 0.148202415721466 0.140770953725647 0.164022415414861 0.141344007989155 0.174400546985766 0.154827487983387 0.151758355579104 C C + 77265 77604 77429.091 76481 77672 + gene protein_coding_gene FALSE TRUE ATCG00730.1 A chloroplast gene encoding subunit IV of the cytochrome b6/f complex Identical to Cytochrome b6-f complex subunit 4 (17 kDa polypeptide) (petD) [Arabidopsis Thaliana] (GB:P56774); similar to cytochrome b (MTCYB) (COB) (CYTB) [Arabidopsis thaliana] (TAIR:AT2G07727.1); similar to cytochrome b6/f complex subunit IV [Nicotiana tabacum] (GB:NP_054531.1); similar to cytochrome b6/f complex subunit IV [Nymphaea alba] (GB:YP_053185.1); contains InterPro domain Photosynthetic reaction centre protein cytochrome b6/f_IV; (InterPro:IPR005870); contains InterPro domain Cytochrome b/b6, C-terminal; (InterPro:IPR005798) -0.762029724486177 -4.97509212186997 0.000939717608195303 1 6.43445884349646 17.5450002275260 -0.762029724486177 0.199122168604980
AT1G68650_at 6.04107475760668 5.61775308585091 5.96405420826399 5.80238241302783 4.04483384918905 4.11918321950841 6.04610949115528 5.71537448254793 4.17772638855718 4.53930485915916 4.14950973058801 4.59693680199493 3.82274933196312 4.20164625287123 4.00548250276233 3.79070334189403 3.77309607433492 5.04034559428993 4.03582556630805 0.21302876907351 0.208384998274016 0.203882527075912 0.211727167070674 0.20422109467628 0.212950489060546 0.203528343973237 0.207444895625386 0.213053739942038 0.206626982369989 0.205281207446499 0.201502452526755 0.201976585052257 0.207215886627012 0.207437206671024 0.201630051304646 0.207775463286477 0.203239889772275 0.204975701955988 1 1|0 +|/ 25779982 25781301 25780648.444 25779404 25781537 + gene protein_coding_gene FALSE TRUE AT1G68650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25520.1); similar to Os08g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061871.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_798718.2); contains InterPro domain Protein of unknown function UPF0016; (InterPro:IPR001727) -0.475429049648515 -4.97136371298555 0.000944283672903361 1 6.43028722679302 9.63060117598314 -0.475429049648515 0.097933113099623
AT4G15550_at 7.80782781119243 8.161604888116 7.99567513193478 8.37046404320798 8.47466075522095 7.93464871095396 8.57224277201975 8.8695503034454 8.00035300527165 8.50412256531443 9.39119369614514 9.56531760328344 9.65712707215644 9.6746478666101 9.48363288033028 10.2484085023537 9.9322722579053 9.8719520286399 8.70093210596211 0.138030767688551 0.128021882734578 0.141942775170634 0.124704409212166 0.125983412306656 0.134747088066409 0.127331505062936 0.123418617498469 0.139110702323117 0.127283790224491 0.130072867903601 0.127330119820815 0.122274166328163 0.121657352173465 0.127488231752683 0.126089904621159 0.123441331499011 0.121657352173465 0.123565051557292 4 4 - 8877904 8878438 8878148.909 8877588 8879325 - gene protein_coding_gene FALSE TRUE AT4G15550.1 IAGLU (INDOLE-3-ACETATE BETA-D-GLUCOSYLTRANSFERASE); UDP-glycosyltransferase/ transferase, transferring glycosyl groups UDP-glucose:indole-3-acetate beta-D-glucosyltransferase similar to UGT1 (UDP-glucosyl transferase 75B1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05560.1); similar to glucosyltransferase NTGT2 [Nicotiana tabacum] (GB:BAB88935.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.583661073107332 4.9709100700619 0.00094484087596687 1 6.42977948674014 17.3382700756501 0.583661073107332 0.139051304139259
AT2G46340_at 8.7196993822457 9.09751025017083 9.4182863064828 9.51604487749946 9.81023985088621 9.40844980067904 10.0829632466643 10.0464699894140 8.15828143004281 8.01878922401403 8.8002952745439 8.67708245392413 9.38719647817927 9.05159907549685 8.57604837417965 9.2166774822989 9.22426064054307 8.71484475759638 8.0073810998952 0.168225672882021 0.163936557068396 0.164412131952465 0.166142686069421 0.170685669344599 0.171236377551962 0.172134079708362 0.165673721295554 0.184666365994436 0.182714681990427 0.169710077621689 0.167047055540098 0.166622771670943 0.168429028459852 0.169852100902815 0.163738427987251 0.171166005314790 0.165972509733897 0.182192673042884 2 2 - 19029716 19032999 19031329.45 19029246 19034440 - gene protein_coding_gene FALSE TRUE AT2G46340.1 SPA1 (SUPPRESSOR OF PHYA-105 1); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA1 is a PHYA signaling intermediate, putative regulator of PHYA signaling pathway. Light responsive repressor of photomorphogenesis. Involved in regulating circadian rhythms and flowering time in plants. Under constant light, the abundance of SPA1 protein exhibited circadian regulation, whereas under constant darkness, SPA1 protein levels remained unchanged. In addition, the spa1-3 mutation slightly shortened circadian period of CCA1, TOC1/PRR1 and SPA1 transcript accumulation under constant light. similar to SPA2 (SPA1-RELATED 2), signal transducer [Arabidopsis thaliana] (TAIR:AT4G11110.1); similar to Os05g0571000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056370.1); similar to Os01g0725800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044115.1); similar to hypothetical protein DDBDRAFT_0219336 [Dictyostelium discoideum AX4] (GB:XP_636746.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.473055570437211 4.96667581508991 0.000950058991658634 1 6.42503850394053 18.0212002055449 0.473055570437211 0.0971366776629158
AT1G07570_at 5.66482474207448 5.40096254471781 3.78784391866508 3.87568167533846 5.21180882340464 4.84919547301626 4.64609365813951 5.0568719780201 5.56303177104982 4.57289251359807 5.46516621964594 5.8897350778791 4.60135620913866 4.74740519707752 4.76714161191547 5.07899679980594 4.17894799869242 4.94752577404844 5.43365727079453 0.22197874672049 0.22197874672049 0.227133079466982 0.235606628997063 0.234197162559499 0.229006898454398 0.235562984778832 0.230680472331272 0.231601118027405 0.237917291427884 0.225593096186627 0.229592458438617 0.222741320946369 0.228217556888534 0.224377463864496 0.22197874672049 0.223433063638433 0.230507099970839 0.225208266606743 1 1|0 -|/ 2331393 2331953 2331666.9 2331167 2333681 - gene protein_coding_gene FALSE TRUE AT1G07570.1|AT1G07570.2 APK1A (Arabidopsis protein kinase 1A); kinase Protein kinase capable of phosphorylating tyrosine, serine, and threonine residues Identical to Protein kinase APK1A, chloroplast precursor (EC 2.7.11.1) (APK1A) [Arabidopsis Thaliana] (GB:Q06548;GB:Q9LNY0); similar to APK1B (Arabidopsis protein kinase 1B), kinase [Arabidopsis thaliana] (TAIR:AT2G28930.2); similar to protein kinase [Brassica rapa] (GB:BAD12263.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.495690957793616 -4.96605866990613 0.00095082214266629 1 6.42434723271743 9.88635779142517 -0.495690957793616 0.106335860008681
AT3G17090_at 8.25305414609485 8.41037617009796 8.50238634484696 8.48940189772868 8.8519534911702 8.7260830886103 8.69456794596404 8.46163374770972 8.13262470699567 7.91586646376037 8.76186610168711 9.01100964566051 8.33832570059844 8.50685320626618 8.84510583302839 8.26202920939132 8.31968806978015 8.16455048558204 7.79754377117974 0.199012510673458 0.182073492303393 0.186609469399219 0.196778699786872 0.187287336480954 0.189936013844155 0.182073492303393 0.195907759184627 0.212947171242608 0.187174721583173 0.185134685473604 0.186993822340717 0.191343898033984 0.184094314208438 0.185326588237263 0.185044499438574 0.194784756703764 0.195029085845365 0.196513008477440 3 3|0 +|/ 5828097 5829300 5828757.7 5826809 5829639 + gene protein_coding_gene FALSE TRUE AT3G17090.1|AT3G17090.2 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G38520.2); similar to Os03g0832400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051801.1); similar to putative protein phosphatase 2C [Sorghum bicolor] (GB:ABE77197.1); similar to Os03g0137200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048899.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G38520.2); similar to protein phosphatase 2C family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99721.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.382524210321537 4.9659742666533 0.000950926565959521 1 6.42425268634661 16.7861105267668 0.382524210321537 0.0533447882806174
AT3G51010_at 8.14463942823562 8.29903424058562 7.72066044792183 7.90474698086946 7.58735586776967 7.53591720862998 7.81306207571972 8.07944532156407 7.77921160969345 7.49899492613226 7.18830362548403 7.36597217748468 6.99682214951773 7.04846186209402 7.55940063096638 7.09893766746759 6.76302389913927 7.63683900349923 7.54596528617203 0.173192362647664 0.172860351276450 0.178359542941903 0.166233562811313 0.182544266194318 0.181889959985281 0.176384972331714 0.172826400782312 0.189771481325367 0.167684529751818 0.168807039955841 0.169626143948006 0.165045662006798 0.174875262008343 0.177783758687012 0.168327594748024 0.169901132720067 0.167346943228063 0.163824334392184 3 3|0 -|/ 18957933 18958982 18958676.889 18957679 18959138 - gene protein_coding_gene FALSE TRUE AT3G51010.1 similar to Os05g0126200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054525.1) -0.398856143635578 -4.9658211279635 0.000951116060174177 1 6.42408114101002 15.2932463968899 -0.398856143635578 0.0627144894263751
AT3G43670_at 8.6833346253595 9.13266788721597 7.3805457944933 7.59953478215643 7.16751171882903 6.49842799739533 7.08818949750137 7.2824452177491 5.07373566490149 4.95664423500296 5.17200391338094 4.30336796241184 3.90037373481249 3.7460080347424 4.85010868987123 3.72414556705803 3.79945706291051 6.87063561210823 4.60646401594608 0.284383039021701 0.287175109989008 0.288565314299501 0.286019329680801 0.280194384604110 0.326155374001942 0.280348987802015 0.280194384604110 0.298399409661222 0.288354461749661 0.280194384604110 0.283329695052222 0.284071908380715 0.303189673497093 0.280194384604110 0.291002570446511 0.284868371625639 0.286811119749954 0.280194384604110 3 3 + 15579987 15580680 15580388.7 15578087 15580889 + gene protein_coding_gene FALSE TRUE AT3G43670.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G62810.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); similar to copper-containing amine oxidase [Solanum lycopersicum] (GB:CAI39243.1); similar to Os04g0269600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052338.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.609169816763089 -4.9631495204623 0.00095442851559114 1 6.42108773614137 12.3164374621436 -0.609169816763089 0.148390198452368
AT1G75040_at 13.0897186960639 13.2149162884314 13.4598529337193 13.4387401801998 12.4513742781635 12.2549886870167 9.16261511389168 9.15790024598046 10.5672435313531 8.95410595159737 8.18263567567107 9.86525549161533 8.05050466489242 8.61410464977057 8.7762372008164 8.45591223423318 7.75784931329801 8.28279635087202 9.02868711743509 0.158569926820544 0.159802820849473 0.163423278279040 0.160058810554826 0.160919946202367 0.159268138120701 0.164847591637889 0.159635237333735 0.165328749231778 0.158193088099525 0.161442359423422 0.153901361896772 0.165476269218229 0.165360866077519 0.157881595076844 0.158409383118586 0.178159940990032 0.166831398121666 0.154126831739238 1 1 + 28181916 28182366 28182163.091 28181364 28182601 + gene protein_coding_gene FALSE TRUE AT1G75040.1 PR5 (PATHOGENESIS-RELATED GENE 5) Thaumatin-like protein involved in response to pathogens. mRNA level of the PR-5 gene (At1g75040)is significantly changed after cutting the inflorescence stem indicating the existence of a network of signal transducing pathways as other stress-regulated genes (At5g01410, At3g17800, At1g29930)do not response to the treatment. Identical to Pathogenesis-related protein 5 precursor (PR-5) [Arabidopsis Thaliana] (GB:P28493); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75050.1); similar to SCUTL2 [Vitis vinifera] (GB:AAF06347.1); contains InterPro domain Thaumatin, pathogenesis-related; (InterPro:IPR001938) 0.363217257266941 4.96183972284136 0.000956057070120034 1 6.41961970166972 21.036183710154 0.363217257266941 0.0404776730085959
AT3G47810_at 10.3195131058116 10.3054672557790 10.7098671008489 10.7518317906522 10.8414053582231 10.3344826543354 10.1115058132909 10.1021832392330 10.0218686641049 9.65559595890462 10.2035340373750 10.0249784713373 9.85304462641855 10.2248431011086 10.0341030433323 10.0756715105507 10.0716472979561 10.2723475094413 9.25073845960655 0.104365955445789 0.102589516218568 0.102264337470064 0.111078282095174 0.104587958763326 0.115509901432253 0.103421636009277 0.103338102149433 0.109708176845772 0.104689205538084 0.102264337470064 0.102264337470064 0.106824674811752 0.105265043599841 0.106697008716633 0.103957495190602 0.116973681701502 0.103329704334328 0.106922878566073 3 3|0 -|/ 17648319 17649964 17649081.778 17648107 17650676 - gene protein_coding_gene FALSE TRUE AT3G47810.1|AT3G47810.2|AT3G47810.3 MAG1 (MAIGO 1); protein serine/threonine phosphatase Homolog of yeast retromer subunit VPS29. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. similar to Protein of unknown function UPF0025; Metallophosphoesterase [Medicago truncatula] (GB:ABE77945.1); similar to Os02g0265400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046499.1); contains InterPro domain Protein of unknown function UPF0025; (InterPro:IPR000979); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.45100810565212 4.95870742552647 0.000959963894469246 1 6.4161077352149 20.3034098200528 0.45100810565212 0.0880737495885474
AT3G43230_at 9.0920853873966 9.15458749605944 9.4837371136731 9.53765640799737 9.8524165533038 9.63440328454105 8.82651248120392 8.77720648388038 8.82721144497584 8.79953279571275 9.0240043609832 8.5352527849258 9.05750311954852 8.84103717236433 8.40468956426136 9.13772303916752 9.12113496149487 8.76970948182658 8.76786635489493 0.101049042088049 0.09956194622803 0.100428401154059 0.101762569685673 0.0999138319836965 0.101869687734167 0.099634817543436 0.101602467372488 0.121149608263874 0.104588756918194 0.102762946344146 0.107810718489436 0.103457814224364 0.107703770521954 0.110695173468159 0.09956194622803 0.108808796440220 0.121658217930897 0.106646652021292 3 3 + 15219805 15220558 15220184.455 15218355 15220813 + gene protein_coding_gene FALSE TRUE AT3G43230.1 zinc finger (FYVE type) family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G29800.2); similar to Os07g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060279.1); similar to putative senescence-associated-like protein [Zea mays] (GB:AAV64197.1); similar to Os07g0272400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059348.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Protein of unknown function DUF500; (InterPro:IPR007461); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.363816828227044 4.95642866952438 0.00096281700533381 1 6.41355165573584 18.1246183222233 0.363816828227044 0.0412344892583620
AT1G10760_at 11.7078291278082 11.4967039870078 11.5362898019980 11.4324150103208 11.8931615481522 11.6497641673309 11.0278755824329 10.9296601216979 10.6204031692657 11.0366978424224 11.0849940610816 10.9261712651063 11.3427443792564 11.4048285602321 11.0635089274046 11.1357825010502 11.3999175065106 11.3755813360383 10.6359116738090 0.0602158045897012 0.0592457827866185 0.0605688305526579 0.0606224478817592 0.0617626498614107 0.0634131154108158 0.0601481230402466 0.0630108058462096 0.0675063091692961 0.0592457827866185 0.0592457827866185 0.0605108869609763 0.059353640679287 0.0609447245091574 0.0599987330855719 0.0592457827866185 0.0646915690685284 0.0638448267826984 0.0595507662238436 1 1|0 -|/ 3581306 3581994 3581658.111 3581035 3590044 - gene protein_coding_gene FALSE TRUE AT1G10760.1 SEX1 (STARCH EXCESS 1) Encodes an α-glucan, water dikinase required for starch degradation. Involved in cold-induced freezing tolerance. Mutations that eliminate the GWD protein or affect the dikinase domain of the enzyme dramatically reduce both the amount of phosphate in the amylopectin and the rate of starch degradation. Mature leaves of these mutants accumulate amounts of starch up to seven times greater than those in wild-type leaves. NMR analysis of the mutants, suggests that the gene is specifically involved in the phosphorylation of the glucosyl residues of starch at the C6 position. Identical to Alpha-glucan water dikinase 1, chloroplast precursor (EC 2.7.9.4) (Protein starch-related R1) (Protein starch excess 1) (GWD1) [Arabidopsis Thaliana] (GB:Q9SAC6;GB:Q93VD0;GB:Q940Z0;GB:Q9FPP2); similar to ATGWD2/GWD3/PWD (PHOSPHOGLUCAN, WATER DIKINASE) [Arabidopsis thaliana] (TAIR:AT4G24450.1); similar to starch associated protein R1 [Solanum tuberosum] (GB:AAK11735.1); similar to Alpha-glucan water dikinase, chloroplast precursor (Starch-related R1 protein) (GB:Q9AWA5); similar to Alpha-glucan water dikinase, chloroplast precursor (Starch-related protein R1) (GB:Q8LPT9); contains InterPro domain Pyruvate phosphate dikinase, PEP/pyruvate-binding; (InterPro:IPR002192) 0.394871966233225 4.95514500399023 0.000964428265784368 1 6.41211135593087 22.4497267328023 0.394871966233225 0.0610008139062401
ATCG00065_at 6.18209528796965 6.96859847745906 7.29494129948832 6.53326645009765 6.08406785095882 5.4581540878038 5.83388596336377 5.80437023548716 8.44970605332411 7.63996630151505 9.91983384946677 10.3975141697100 9.87551626915774 9.61157077951374 9.23029439292208 9.69428744425779 8.85500693633095 8.0145515718508 7.78625631751912 0.249492822855593 0.254135011610133 0.249492822855593 0.250716705504425 0.252920994214949 0.251824552392578 0.249492822855593 0.25050053658992 0.249492822855593 0.249492822855593 0.258144517998204 0.256494069044152 0.253999000360867 0.252233926061593 0.250522674894096 0.254834554694096 0.252772210995129 0.249492822855593 0.249492822855593 C C - 69611 69700 69648.364 69611 69724 - gene protein_coding_gene FALSE TRUE ATCG00065.1 chloroplast gene encoding ribosomal protein s12. The gene is located in three distinct loci on the chloroplast genome and is transpliced to make one transcript. Identical to Chloroplast 30S ribosomal protein S12 (rps12-B) [Arabidopsis Thaliana] (GB:P62126;GB:P06369;GB:P28806;GB:P56803;GB:Q9XQZ8); similar to ribosomal protein S12 [Platanus occidentalis] (GB:YP_740544.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S12, bacterial and chloroplast form; (InterPro:IPR005679); contains InterPro domain Ribosomal protein S12/S23; (InterPro:IPR006032) 0.818274483441189 4.95471406929108 0.00096496983191274 1 6.41162777140509 14.9741548652972 0.818274483441189 0.218307965254089
AT4G02130_at 4.94625781309103 5.08255310874714 4.61014599332984 4.82706540306988 4.66911968331945 4.84069984211733 5.41539473791442 5.27629263545364 6.00910309893093 5.36998808661695 8.16671365926105 6.61960544567245 6.5082489109381 7.30181003617995 7.20877375079918 5.53874496195297 5.6322605679015 5.96746392777062 4.80487255663249 0.217531949190922 0.214544146369209 0.225425938752372 0.214889264963938 0.213440323605614 0.219755009809086 0.211813381175788 0.222235990230667 0.234660200297978 0.221557870062303 0.218656087384874 0.213560917488934 0.213542279001885 0.228770711973411 0.21941311669921 0.211813381175788 0.224855754009220 0.220470184735323 0.218971112751459 4 4 - 945774 946339 946002.182 944360 947085 - gene protein_coding_gene FALSE TRUE AT4G02130.1|AT4G02130.2|AT4G02130.3 GATL6/LGT10; polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups|GATL6/LGT10; transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GATL5, transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G02720.2); similar to Glycosyl transferase family 8, putative [Medicago truncatula] (GB:ABE91008.1); similar to Os03g0300900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049861.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.38996561674513 4.94852115740015 0.000972789165056051 1 6.40467453142983 10.9647447712735 0.38996561674513 0.0585374082014409
AT2G33620_at 5.57340355807905 5.85286704004768 6.32417821336946 6.41810209650774 7.031444030879 6.39633337471233 6.46620042061947 6.69737019293911 5.85111545539827 5.95399713118305 6.67542334212647 6.5646846484496 6.70798483446783 6.88198367773347 6.90404784518052 6.39766122471645 6.6132603482806 6.62489690352446 6.09707277398303 0.199693381321094 0.193315880536948 0.194402188425935 0.189320373541061 0.202057692357412 0.200559372393151 0.188765457740193 0.193786199605770 0.215428306231329 0.188765457740193 0.191230852565955 0.188765457740193 0.189309174526611 0.201867540490758 0.201479081805038 0.189664509608914 0.206086944713939 0.210137969485039 0.191906309232200 2 2 + 14242606 14243573 14243146.818 14241283 14243959 + gene protein_coding_gene FALSE TRUE AT2G33620.1|AT2G33620.2|AT2G33620.3 DNA-binding family protein / AT-hook protein 1 (AHP1) similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT4G17950.1); similar to putative AT-hook DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10062.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.549450929408807 4.94759975125231 0.000973958419636846 1 6.40363940873678 12.6643063525182 0.549450929408807 0.127606728634847
AT1G55805_at 7.51650918744598 7.70734507450674 6.79009661786318 6.8281398904335 7.15871590613123 7.42714491374424 7.72621819202533 8.093105458557 7.56211584353229 7.69513819508346 7.49457161618948 7.96941078289862 7.48445292656951 7.0245762808297 7.6432648265863 7.55686503100519 7.41299553491848 7.52391581480739 7.81769721152252 0.170965386634579 0.183251542604101 0.172058697262708 0.179075863572755 0.169546874479136 0.169546874479136 0.175074076786522 0.183927709577309 0.193393152303027 0.169546874479136 0.184890487093428 0.172576558573802 0.169546874479136 0.176380390749889 0.181236588075068 0.170557404904951 0.1774969512934 0.174617551468632 0.170769644020398 1 1 - 20862622 20862923 20862757.545 20862389 20863105 - gene protein_coding_gene FALSE TRUE AT1G55805.1 BolA-like family protein similar to ATSUFE/CPSUFE/EMB1374 (EMBRYO DEFECTIVE 1374), enzyme activator/ transcription regulator [Arabidopsis thaliana] (TAIR:AT4G26500.1); similar to unknown [Glycine max] (GB:AAO23079.1); contains InterPro domain BolA-like protein; (InterPro:IPR002634) -0.443831980538947 -4.9419266017507 0.00098119126381796 1 6.39726272142357 15.0086129143076 -0.443831980538947 0.0855747919367505
AT3G19000_at 7.59885441542805 7.70201534720511 7.67089836733732 7.89431125791194 8.6776617892158 8.31181802882525 9.01835404070694 9.09360140243079 7.04922504541765 8.57998272865583 6.50979739823633 6.49564067589881 7.8699452242455 7.40200035576642 6.24497052745302 8.02346978100946 8.41288529358672 7.36744010508453 8.15366745489742 0.195452778719768 0.197706051817655 0.196551007069145 0.200769703320919 0.190200759635645 0.200953864910935 0.194516414574851 0.209162781275257 0.210321930245246 0.195926370255502 0.187784642271271 0.198760363808429 0.185851923752814 0.200864846645566 0.210105312494206 0.192124334414131 0.207028665007698 0.209070108644788 0.196949709851538 3 3 - 6553841 6554301 6554152.182 6553535 6555153 - gene protein_coding_gene FALSE TRUE AT3G19000.1|AT3G19000.2 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19010.1); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os08g0249900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061373.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G19010.2); similar to putative oxylase protein [Pinus pinaster] (GB:CAC83305.1); similar to Os03g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050669.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.425695173391839 -4.93808862902 0.00098611742757128 1 6.39294549753657 15.8551362043745 -0.425695173391839 0.0774038748593676
AT3G01180_at 8.06659576674113 8.08684271794564 7.99352874861714 7.94522396283703 8.04739476090965 7.73423643184065 8.81636726971943 8.82142358473843 8.25448381755152 8.44458760787493 7.83080257497622 8.02093881618779 8.09513054390179 8.2481972322983 7.76972374212032 8.55455942941462 8.0331329236241 7.85692154293558 8.19808074702429 0.120476754048088 0.116944882139408 0.115844118219606 0.115165954539040 0.115165954539040 0.123863132649832 0.119355330125604 0.120407591790981 0.122170595056881 0.115165954539040 0.122852722105807 0.118275110995349 0.115165954539040 0.119730885377097 0.135072593168318 0.115165954539040 0.132444993206060 0.127584639299088 0.117923010164438 3 3 - 62629 63035 62838.455 62252 65852 - gene protein_coding_gene FALSE TRUE AT3G01180.1 glycogen synthase, putative similar to SSI (STARCH SYNTHASE I), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G24300.1); similar to starch synthase II [Amaranthus cruentus] (GB:ABA64552.1); similar to granule bound starch synthase II precursor [Manihot esculenta] (GB:AAF13168.1); similar to Granule-bound starch synthase 2, chloroplast precursor (Granule-bound starch synthase II) (SS II) (GBSS-II) (GB:Q43847); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.382793116101473 -4.93508631782773 0.000989989694635336 1 6.3895664298313 16.3640649428349 -0.382793116101473 0.0549532344413117
AT3G59940_at 11.5019765842664 11.6462081956725 11.8936489835968 11.9657051179188 12.3187630378991 12.2744615349683 11.2223656712732 11.5850327060109 11.5202875853563 11.7168680858917 11.9742738062148 11.7723250554914 12.0410550604667 11.9297596316360 11.4534140611367 12.0854547693546 11.7656886145414 11.6747805795066 11.6984835316856 0.0728796694254385 0.0686974339382054 0.0716574981071772 0.0730073207353303 0.0706727037593621 0.0762017477729909 0.0691610812064062 0.0688465862925786 0.0823392119102593 0.0699191167985227 0.0686974339382054 0.070085235055643 0.0688232283508926 0.0739033120933079 0.0694624743714636 0.0686974339382054 0.079351552953234 0.0726813726544095 0.0686974339382054 3 3 + 22154643 22155217 22154890.364 22153877 22155416 + gene protein_coding_gene FALSE TRUE AT3G59940.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44130.1); similar to kelch repeat-containing F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15578.1); similar to Os11g0246200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067606.1); similar to Os06g0594400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057979.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.408064879469515 4.92938606127672 0.00099738713214879 1 6.38314637286548 23.5421737364197 0.408064879469515 0.0691103383128616
AT1G09940_at 4.89013124863716 5.14621045143868 5.22004163898473 5.36812134533907 5.09444304960052 4.92313712622417 4.42943429599165 4.60166304987483 5.04491494616125 4.09271770857191 4.74596620541408 4.73068743447186 4.47662425317474 4.71685793308403 4.9520657491195 4.5093248365508 4.58906292955767 4.84330620141501 3.69042666190395 0.215818447720167 0.217632249649594 0.220655294452075 0.219026019257696 0.213244086485997 0.225759710069798 0.212977374948101 0.224868998597675 0.216910869281523 0.219601598088251 0.217218481829598 0.210001711138829 0.221685082629140 0.209801555501635 0.210133832848467 0.211967655202194 0.223887473723896 0.209801555501635 0.224516149542372 1 1 - 3237295 3237785 3237586.545 3236997 3239556 - gene protein_coding_gene FALSE TRUE AT1G09940.1 HEMA2; glutamyl-tRNA reductase Encodes glutamyl-tRNA reductase. Identical to Glutamyl-tRNA reductase 2, chloroplast precursor (EC 1.2.1.70) (GluTR) (HEMA2) [Arabidopsis Thaliana] (GB:P49294;GB:O04950); similar to HEMA3, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT2G31250.1); similar to HEMA1, glutamyl-tRNA reductase [Arabidopsis thaliana] (TAIR:AT1G58290.1); similar to glutamyl-tRNA reductase precursor [Glycine max] (GB:AAD16897.1); similar to Glutamyl-tRNA reductase 2, chloroplast precursor (GluTR) (GB:P49294); similar to glutamyl-tRNA reductase (GB:AAA19118.1); contains InterPro domain Shikimate/quinate 5-dehydrogenase; (InterPro:IPR006151); contains InterPro domain Glutamyl-tRNA reductase; (InterPro:IPR000343); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) 0.402021599593815 4.92329751020342 0.00100535474836641 1 6.37628250341039 9.44490113329176 0.402021599593815 0.0662400766305954
AT4G35850_at 5.9594490306195 6.12203449441549 5.26997303541456 5.57375954757988 5.12152640024415 5.39349906652294 6.14777377578733 6.071102635288 4.70365824730438 4.85328665030228 4.46612899303019 5.23372015083854 4.61925424239977 4.71690604377057 5.35885585262866 4.77805226867647 5.04389363186122 4.70263925659347 5.37367874462925 0.229350759811103 0.230450468908175 0.224679174251709 0.223274489287612 0.22556385435848 0.226461820401133 0.223274489287612 0.232527494449927 0.223274489287612 0.226233798752457 0.226785054946964 0.224403517345434 0.229528457014047 0.231150213981926 0.228649661713994 0.223558915367727 0.227777349510567 0.225393405429890 0.228936982062920 4 4|0 +|/ 16985244 16986448 16985911.875 16983528 16986970 + gene protein_coding_gene FALSE TRUE AT4G35850.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G02150.1); similar to Os07g0300200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059422.1); similar to Os05g0145600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054633.1); similar to fertility restorer homologue C [Raphanus sativus] (GB:CAD80164.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.423671857012152 -4.92166671564907 0.00100750054581191 1 6.37444290512523 10.6282926744274 -0.423671857012152 0.0771148112444622
AT4G13530_at 10.6156806547017 10.6094457131359 11.1837053755406 11.1654417424514 11.3156212278488 11.2947735824634 10.8915789337819 10.9022247421333 10.5604508575696 10.8848806053155 11.0267314136485 10.5814548459307 10.9883902051308 10.9473750980361 10.4725059110481 10.9865114537372 11.2224632250763 10.9655809379493 10.7078082521875 0.086403818838193 0.0820806680903624 0.0843247732194689 0.0830124416699108 0.082637986293632 0.0820806680903624 0.082743422307847 0.0820806680903624 0.0900430241058712 0.083284632833596 0.0866436083156809 0.0824190445864934 0.0856391584573457 0.0871438978953799 0.0918367971163877 0.083161718141875 0.0836445678054016 0.084044268176276 0.0876647719006232 4 4 + 7867023 7868496 7867690.273 7866715 7868738 + gene protein_coding_gene FALSE TRUE AT4G13530.1|AT4G13530.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10080.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82228.1) 0.333158184549962 4.91674803497366 0.00101400267906643 1 6.3688915343146 21.8056039338457 0.333158184549962 0.00525012697030267
AT4G27450_at 10.4696766638730 10.6982777971954 10.8212447409696 10.6179961963215 11.3871180272925 11.0073143054957 9.66793706365445 9.80463831445624 11.3803028592026 10.9717548288154 9.43538358066733 8.78594427019167 9.90742648948631 9.59004152419937 7.97372835638065 10.1727059739628 10.0954486633692 9.82810697156803 11.1406902751694 0.129530686851954 0.127537566233746 0.133415386876168 0.139514589090891 0.130946877321340 0.137758413041945 0.133116651512960 0.123051699465770 0.134641990612623 0.122367937667141 0.137811067786703 0.143260280101585 0.133124847501420 0.137502428336242 0.133489018212330 0.126156513410445 0.142715189683277 0.129916081212361 0.122367937667141 4 0|4 /|- 13727671 13728361 13728002.625 13727493 13728892 - gene protein_coding_gene FALSE TRUE AT4G27450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15450.1); similar to unknown [Glycine max] (GB:AAG00940.1); contains domain no description (G3D.3.60.20.10); contains domain N-terminal nucleophile aminohydrolases (Ntn hydrolases) (SSF56235) -0.446182617304623 -4.91629856155105 0.00101459911519349 1 6.36838402698755 20.8781991635526 -0.446182617304623 0.0876460879191499
AT3G14960_at 5.8558249029443 5.71653737449348 6.03396573011759 5.67371445891796 6.20242163843475 6.32571573027801 5.56637136217618 5.56075529892543 4.66553933393887 4.37572501139737 5.12925383933474 4.97956633334532 5.28500461632713 5.2773633018418 5.10215479988519 4.9358225942145 4.74497575719091 4.91571038840364 4.79644811638137 0.226876095213023 0.215408408866883 0.225167487469842 0.222436743897645 0.217617559596702 0.220491992166284 0.215408408866883 0.222039197644436 0.217801767741252 0.226894045337275 0.215408408866883 0.217868461991884 0.226764643109661 0.215408408866883 0.216215248703433 0.216865219456548 0.229367025096219 0.219847659192135 0.225401465360097 3 0|3 /|- 5036265 5036992 5036634.556 5035903 5038014 - gene protein_coding_gene FALSE TRUE AT3G14960.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G53290.1); similar to UCW98, putative galactosyltransferease [Hordeum vulgare subsp. vulgare] (GB:ABL11234.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.408871394023797 4.9139829250873 0.00101767792207278 1 6.36576882751615 10.6963144492312 0.408871394023797 0.0701704049969781
AT3G49910_at 11.4345043349823 11.4576729637166 10.9534250991463 10.9801629318933 11.0959914335853 10.9907259516014 11.4469406479548 11.6754685185867 11.0935779078157 11.0523588162747 10.9326843142082 11.1465683491265 10.7529513547574 10.7065471900814 11.4339160510263 10.5490109771668 10.3420574016714 10.6831434777360 10.9996675130014 0.0949377275639401 0.0943933198019845 0.09291292016421 0.090960685813755 0.0946931107668187 0.101791698229042 0.100121721566263 0.0943506949821265 0.103059408506753 0.0971028737420692 0.0955930607701989 0.090960685813755 0.0972303192312744 0.0981200723605296 0.0960530318243066 0.095036221936392 0.100151873174773 0.103317711312371 0.0937012128754362 3 3 + 18515298 18515665 18515458 18515241 18515952 + gene protein_coding_gene FALSE TRUE AT3G49910.1 60S ribosomal protein L26 (RPL26A) Identical to 60S ribosomal protein L26-1 (RPL26A) [Arabidopsis Thaliana] (GB:P51414;GB:Q9M2W7); similar to 60S ribosomal protein L26 (RPL26B) [Arabidopsis thaliana] (TAIR:AT5G67510.1); similar to 60S ribosomal protein L26 (GB:Q39411); contains InterPro domain Ribosomal protein L24/L26; (InterPro:IPR005825); contains InterPro domain Ribosomal protein L26, eukaryotic and archaeal form; (InterPro:IPR005756); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) -0.364372559239507 -4.91364376973628 0.00101812970373647 1 6.36538571582831 22.1878088027678 -0.364372559239507 0.0439700218578901
AT2G40760_at 6.64418547023465 6.63387695460767 5.76533402051370 6.06647550966336 5.96403429930746 6.20518379761662 6.51620118411139 6.73162555406282 7.49503132540128 7.41637174812204 7.06996958613416 7.65841325499405 6.70460651345437 7.05394590820628 7.82103159071317 7.31326387888097 6.7074597939168 6.96640013018746 7.20910771074534 0.166385298238173 0.164568696561906 0.166779872469645 0.179502869731605 0.185231751386984 0.178218032249054 0.179340697220924 0.169765048043317 0.180862850245874 0.168210430528095 0.167673724218019 0.170485538933493 0.167940858867432 0.16931236535689 0.177994102362758 0.164859620330234 0.180784537631174 0.17157063332443 0.168501102561130 2 2 + 17018498 17019016 17018806.909 17017126 17019145 + gene protein_coding_gene FALSE TRUE AT2G40760.1 rhodanese-like domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09280.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44134.1); similar to Os05g0323100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055193.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.421416323337077 -4.91067989365118 0.00102208708844737 1 6.36203682050855 13.5835595621733 -0.421416323337077 0.076488047462607
AT3G10640_at 6.32234342266712 7.05040346660007 7.41239957638265 7.65911938094335 7.32271304977226 6.9227627540552 5.91290259550959 5.90619099289381 6.50803303220515 5.37288086992337 6.25687233715313 6.02475051544022 5.87342604307532 5.87262816863257 5.59248394195195 6.28043344467184 5.65036334779435 5.75636099549714 5.31270398419861 0.244703065949637 0.245099594988827 0.258092038547237 0.247311763463607 0.247091316781993 0.251808897291271 0.248841717827460 0.241579708600888 0.254528416322997 0.242825486791546 0.242780436825144 0.247012516177936 0.250821789234053 0.255147049890470 0.254079482446865 0.246454556971628 0.256271170054347 0.247006420300428 0.244201319399861 3 3|0 -|/ 3323665 3324502 3323997.7 3323315 3325051 - gene protein_coding_gene FALSE TRUE AT3G10640.1|AT3G10640.2 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT5G04850.1); similar to putative CGI-34 protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16321.1); similar to Os05g0102900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054389.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.606748729019374 4.90713003312826 0.00102684884981323 1 6.3580237282651 12.6359148105461 0.606748729019374 0.149964360376836
AT3G14750_at 5.55256338997677 5.49622397760317 5.82272553346485 5.56635524445984 5.64197082190837 5.74055927105027 5.46599753023859 5.65123632155852 5.57878527711913 5.53276223626696 4.59095878653788 4.7167269615550 4.55659995839373 4.91121020377394 4.52510701213380 5.03827402060322 5.21734167731977 4.2754443969822 5.84335901829668 0.220316210603579 0.216482033183375 0.218850997992223 0.218349795686437 0.214523653065621 0.226042698119811 0.214609720898726 0.214523653065621 0.226368029503706 0.216525670337552 0.222999709300546 0.223316156362060 0.221270925629281 0.221475192613556 0.218776043172261 0.216539827405306 0.225328302688768 0.226019166143723 0.215726191349510 3 3|0 -|/ 4953778 4954934 4954180.556 4953583 4955663 - gene protein_coding_gene FALSE TRUE AT3G14750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67170.1); similar to Os03g0818000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051704.1); similar to Os07g0508200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059743.1); similar to myosin-like protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96059.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.385640110260953 -4.90200743698442 0.00103376272293673 1 6.35222865202968 10.8075007051442 -0.385640110260953 0.0581558808139664
AT3G57410_at 7.87416963819447 7.67132621120119 7.85038937849885 8.18432107863043 8.6684409415285 8.30213759827746 7.88494394200016 7.82872377806965 8.25623488657712 7.56043243849345 8.89502838463139 7.9515526263165 8.36517302081115 8.2054286824836 7.84902726089637 8.44376623135523 8.49148291087235 8.28936074614945 7.6823837797211 0.161086137229848 0.166225478313665 0.166944658952165 0.168114022146017 0.165192096687855 0.169800549580818 0.160452813307017 0.166462426606655 0.171589907112291 0.173008804193271 0.172319411953033 0.160951556189309 0.160817938433070 0.160452813307017 0.164137640270654 0.169516061938428 0.173665770550374 0.175171131169788 0.166162622386468 3 0|3 /|- 21254808 21255265 21255035.375 21254113 21262077 - gene protein_coding_gene FALSE TRUE AT3G57410.1 VLN3 (VILLIN 3); actin binding Encodes a protein with high homology to animal villin. Identical to Villin-3 (VLN3) [Arabidopsis Thaliana] (GB:O81645;GB:Q9LEA4;GB:Q9SCN1); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN2 (VILLIN 2), actin binding [Arabidopsis thaliana] (TAIR:AT2G41740.1); similar to VLN4 (ARABIDOPSIS THALIANA VILLIN 4), actin binding [Arabidopsis thaliana] (TAIR:AT4G30160.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96040.1); similar to actin bundling protein ABP135 [Lilium lon (GB:AAD54660.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96039.1); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Villin headpiece; (InterPro:IPR003128) 0.457433402438199 4.9001951949617 0.00103622074613854 1 6.3501773673076 16.1052413297351 0.457433402438199 0.0931919340951105
AT2G37990_at 7.22552448108203 6.91661237840141 6.55607025958106 6.30932066864517 6.79793034438455 6.49491104680704 7.30485957526664 7.43710161508926 4.55381167085610 5.49944449614101 4.172195851657 5.22677130978428 4.85261129622959 4.45706451368295 5.19932207422475 4.95616781408622 5.16538110676697 4.82294679595755 5.16065827927568 0.239818702093881 0.239818702093881 0.240598471670381 0.244846271848204 0.245600958690323 0.239818702093881 0.24807972604941 0.242902590907316 0.246713679215663 0.239818702093881 0.243593125006423 0.245365870080248 0.241174314009172 0.242018176097554 0.242187122975921 0.244046810676823 0.253513265715809 0.244239866185165 0.248538021126482 2 2|0 +|/ 15908969 15910082 15909556.111 15907713 15910296 + gene protein_coding_gene FALSE TRUE AT2G37990.1 ribosome biogenesis regulatory protein (RRS1) family protein Identical to Ribosome biogenesis regulatory protein homolog [Arabidopsis Thaliana] (GB:Q9SH88;GB:Q56WN3;GB:Q8LA50); similar to Os04g0685100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054315.1); similar to H0913C04.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86168.1); contains InterPro domain Ribosomal biogenesis regulatory protein; (InterPro:IPR007023) -0.448106826365486 -4.898994739228 0.00103785246562792 1 6.3488182390591 11.8442225015186 -0.448106826365486 0.0891896102518345
AT3G27560_at 6.77001882088672 7.04925670066597 7.39513287870817 7.75667389837255 7.19106872650909 7.70076905461977 5.24546828508902 5.79521331503879 5.15866187324795 6.1763858498412 5.74991494473563 5.27058973853811 5.52083585213125 4.97366135847529 4.84117779759967 6.19142522316743 6.26650220129562 5.27612013490329 5.41924918732037 0.249837020519991 0.244136475363907 0.250974812214377 0.246156543510998 0.250847881782043 0.253664210098474 0.25508502223532 0.254422569684141 0.268992475952663 0.258660046966854 0.246545238655435 0.244136475363907 0.255418973657367 0.258036870337222 0.246690841511428 0.246644496002263 0.253456848269805 0.254224980883743 0.250364099829421 3 3|0 -|/ 10211876 10212689 10212092.1 10211668 10214241 - gene protein_coding_gene FALSE TRUE AT3G27560.1 ATN1; kinase/ protein threonine/tyrosine kinase encodes a protein with kinase domains, including catalytic domains for serine/threonine as well as tyrosine kinases. a member of multi-gene family and is expressed in all tissues examined. similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G40540.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06438.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.611217314342441 4.89834646807267 0.00103873478648737 1 6.34808417302822 12.4109722315657 0.611217314342441 0.151923833332223
AT3G28080_at 6.11336862541675 6.32512471928178 6.08710723333643 5.92667586060564 7.06215881081332 6.40659944813213 8.28440258886394 7.75586058278548 6.49169462310826 7.69302165212977 6.76550610281208 6.48545752254307 6.84064681431818 6.54649056567951 6.58061325470148 7.50481312020776 6.81078249299607 6.19724092870076 7.39891198408376 0.196316374270974 0.201147660645191 0.206872900204069 0.205625944962716 0.197672330585670 0.205479868876992 0.205848843513308 0.215021778827046 0.228863007610859 0.205648132372328 0.206532767216846 0.197593793580218 0.202038115682519 0.201664929938319 0.204401818736861 0.195052259788574 0.215230836618369 0.209510894767143 0.201779076800406 3 3|0 +|/ 10454736 10456271 10455390.3 10452755 10456504 + gene protein_coding_gene FALSE TRUE AT3G28080.1|AT3G28080.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28070.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28070.1); similar to Os05g0493800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055921.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE81602.1) -0.613576346863756 -4.89712121723082 0.00104040461988593 1 6.34669655979851 13.7006555353305 -0.613576346863756 0.152807718795237
AT1G29530_at 7.13745379360883 7.41620281114464 6.866709707216 7.20047305110091 7.6870939830615 7.25564185361694 8.59777201846602 8.49796779718887 8.14948649257083 8.12424692075524 7.99252254841239 7.98438487331355 7.69928262687501 8.08293038044614 8.18978179181805 8.00558686682924 7.28343061786923 7.64450211628537 8.27538539813087 0.183845162131588 0.166548562298062 0.182256437186001 0.165730030065476 0.174195257601626 0.202702959352724 0.180359111076607 0.173664008834546 0.187560590147188 0.181328579724334 0.162742781167054 0.162586921323340 0.172222276784240 0.169429877857168 0.172038211285326 0.162586921323340 0.194906381093582 0.193316864357842 0.172439904769517 1 1 - 10325573 10326138 10325839.556 10324731 10326721 - gene protein_coding_gene FALSE TRUE AT1G29530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34310.3); similar to expressed protein, putative [Medicago truncatula] (GB:ABE81136.1) -0.491303166220553 -4.89538645047778 0.00104277382668099 1 6.34473144837526 15.6040855427005 -0.491303166220553 0.107406988365251
AT3G10670_at 9.65520110521728 9.64385006151853 9.29578342849644 9.15633248931768 9.22225749431181 9.32765650322157 10.2699937244691 10.1043130154240 9.57211863466188 9.71221982511083 9.61483256768881 9.70122932217282 9.5319518266667 9.40399448400432 9.51732415254174 9.50581815901184 9.50873215547943 9.5960070426159 9.51379388654468 0.108327018550714 0.106808905782767 0.111996822428703 0.107088074045566 0.10387338370172 0.108186481216664 0.105942272099980 0.105283779130250 0.114475622675445 0.103671783663881 0.108227936778326 0.104601808093420 0.105483888003761 0.117666129293803 0.10456206675947 0.103468306777325 0.108477864610736 0.105299450454080 0.107251594099452 3 3|0 -|/ 3335361 3336497 3335830.167 3335054 3337392 - gene protein_coding_gene FALSE TRUE AT3G10670.1 ATNAP7 (Arabidopsis thaliana non-intrinsic ABC protein 7) Plastidic SufC-like ATP-binding cassette/ATPase essential for Arabidopsis embryogenesis. Involved in the biogenesis and/or repair of oxidatively damaged Fe?S clusters. Expressed in embryos and meristems. Identical to Non-intrinsic ABC protein 7, chloroplast precursor (AtNAP7) (ABC transporter ATPase) (Plastid SufC-like protein) (NAP7) [Arabidopsis Thaliana] (GB:Q9CAF5;GB:Q8LF74;GB:Q9LPN3;GB:Q9SG74); similar to ATNAP13 (EMBRYO DEFECTIVE 2751) [Arabidopsis thaliana] (TAIR:AT4G33460.1); similar to putative ABC transporter like ATPase [Trifolium pratense] (GB:BAE71292.1); contains InterPro domain FeS assembly ATPase SufC; (InterPro:IPR010230); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.359861616410055 -4.89374581602991 0.00104501985775685 1 6.34287246730702 19.1578553090196 -0.359861616410055 0.0417253632144998
AT4G26850_at 11.4394720645240 11.6623508072046 11.9764475155556 12.0772391006121 11.6574643903309 11.4209214203324 12.6101856993346 12.9350761811394 12.492009583703 12.5790896740862 12.0654227947248 11.7731665023541 12.2742589183374 12.0893546318031 11.1683564303129 12.5089942619443 12.1645940406045 12.0443767440436 12.4072034151894 0.0814551220670467 0.0758225876760804 0.0809216857939738 0.0781199003388048 0.0758225876760804 0.0852198915601846 0.0807106624223858 0.0789586962398908 0.0827241343885292 0.0785884381490801 0.0769955226115552 0.077531060524407 0.0792194660754643 0.0776328785879582 0.0826964126066735 0.0758225876760804 0.0845759110591077 0.0803535706110214 0.0759185481082966 4 4|0 -|/ 13499282 13499922 13499544.5 13499016 13501654 - gene protein_coding_gene FALSE TRUE AT4G26850.1 VTC2 (VITAMIN C DEFECTIVE 2) a gene encoding a novel protein is involved in ascorbate biosynthesis. recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55120.1); similar to unknown [Xerophyta humilis] (GB:AAT45011.1); similar to Os12g0190000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066338.1); contains domain SUBFAMILY NOT NAMED (PTHR20884:SF3); contains domain FAMILY NOT NAMED (PTHR20884) -0.430227549243429 -4.89177139900922 0.00104772979425116 1 6.34063463592305 24.2243111964668 -0.430227549243429 0.0814167073877079
AT4G26510_at 8.92733707347858 9.17150455920639 9.45841445918618 9.23195178905828 9.71548411671275 9.26721474055933 9.4103494200715 9.1907698834599 8.49065804326952 8.23763899236638 9.31295525945259 9.23733962086271 8.96963794139589 9.07955046222425 8.73090455655404 9.09946157421741 8.57037412523829 8.98920814236768 8.105123977693 0.169690715675791 0.166139826594667 0.175699479678408 0.172033121185898 0.172657534203243 0.181727834422556 0.180553145962211 0.165293573356279 0.201431173279387 0.180158042542471 0.167047187213141 0.168108497555990 0.174184092214667 0.173508217075917 0.180235564245467 0.165293573356279 0.195018999792540 0.183969475520226 0.176406128550714 4 4|0 +|/ 13386691 13387862 13387137.125 13384070 13388297 + gene protein_coding_gene FALSE TRUE AT4G26510.1|AT4G26510.2 uracil phosphoribosyltransferase / UMP pyrophosphorylase (UPT1) Identical to Uracil phosphoribosyltransferase (EC 2.4.2.9) (UMP pyrophosphorylase) (UPRTase) (UPT1) [Arabidopsis Thaliana] (GB:O65583;GB:Q9SYU2); similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT3G27190.1); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT1G55810.3); similar to Phosphoribosyltransferase; AAA ATPase; Phosphoribulokinase/uridine kinase [Medicago truncatula] (GB:ABE83101.1); similar to Os02g0273000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046530.1); similar to Os11g0265000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067657.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764) 0.482073999085592 4.8913005312985 0.00104837719642608 1 6.34010084382004 17.9348712375827 0.482073999085592 0.103841985430538
AT3G60520_at 8.33967792741392 8.64759931464175 7.5952560529149 7.63868490899853 8.66669216441845 8.48209596589033 8.27903450724741 8.44306407543681 6.96414507505343 7.33280451763728 6.87483579424919 6.9412743932282 7.16368274987748 6.3063405673738 5.84577748621684 6.41408871515349 7.3515920327472 6.88234192719977 7.29904666981512 0.212572965503083 0.208806585756080 0.202596827469495 0.207068006269959 0.208424429993439 0.2095666497028 0.20441952872055 0.208287910404723 0.212417861262593 0.204850016119671 0.210876614005240 0.205058433544786 0.205242059394527 0.222038272431188 0.214338691306827 0.209721719949063 0.213074120932841 0.205424407980212 0.206608721778904 3 3|0 -|/ 22372777 22373379 22372996.1 22372505 22373554 - gene protein_coding_gene FALSE TRUE AT3G60520.1 zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02070.1); similar to hypothetical protein MtrDRAFT_AC151481g3v1 [Medicago truncatula] (GB:ABE86976.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) -0.403917697854475 -4.8884624354478 0.00105228852803813 1 6.3368826294447 15.2220916791658 -0.403917697854475 0.0687188503874419
AT2G28840_at 10.4030131250239 10.4871657484738 10.3855023612725 10.3358738242854 11.0556420536506 10.3804096915108 9.822264831279 9.3860001214198 9.55889567701417 9.59101004611807 10.3135989332138 10.1832463142993 10.1024280658274 10.1542769625402 9.88098439089903 9.8939441040063 10.0108028222351 10.1392681545026 9.18913339960718 0.110992857830927 0.112579547703341 0.113986005991196 0.110081224978699 0.114702341086554 0.120513122645874 0.108881198537658 0.108602612745986 0.124442662535519 0.110068646552444 0.112795084616460 0.108111007463262 0.112080780882013 0.112480054493751 0.112095364129141 0.108307498967028 0.115460202270831 0.117107586197586 0.114771388105077 2 2 + 12386907 12387496 12387216.636 12385414 12387819 + gene protein_coding_gene FALSE TRUE AT2G28840.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07270.1); similar to ring zinc finger protein [Artemisia desertorum] (GB:AAY17949.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.576609185162337 4.88519282229654 0.00105681417798106 1 6.33317329588028 20.0475665159579 0.576609185162337 0.140143326932676
AT1G72160_at 10.7223885010997 10.9482639933079 11.1418019938192 11.1963339724174 11.3973711498266 11.0748673129924 11.0683761361977 10.8740809618078 10.9384045355408 10.6955697320636 11.6589769875145 11.0659294584828 11.4918465930490 11.4575209254603 11.0811161509841 11.2396685590586 11.4161682088990 11.6389719293570 10.8922578561333 0.0956987954775847 0.0898036386818501 0.0878243268356445 0.0890701831711277 0.0886308480264735 0.0909889911580362 0.088837376218093 0.088868824432101 0.0921307425329003 0.0868549827269704 0.0891807234509632 0.087568026596526 0.0864883384266212 0.0903858831423315 0.0892715126235432 0.0882273166202338 0.093511935521742 0.0904508241711521 0.0885564066944287 1 1 - 27157497 27158179 27157846.364 27157243 27159326 - gene protein_coding_gene FALSE TRUE AT1G72160.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-3 (PATL3) [Arabidopsis Thaliana] (GB:Q56Z59;GB:Q94AG3;GB:Q9C7T9); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT4G09160.1); similar to hypothetical protein [Cicer arietinum] (GB:CAB95829.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.419256843091020 4.88362654625551 0.00105898961723503 1 6.33139569071166 22.1646116157735 0.419256843091020 0.0765662390871388
AT1G71860_at 9.29469241678161 9.30783030816847 9.72191580736917 9.66869602629825 9.97976823570996 9.7689720841039 9.19203416602456 9.10925635530054 8.81876329970331 8.76530091180174 9.06184742434094 8.87766597795837 9.14338641481618 8.70135975597617 8.83411838108894 9.1463599645244 9.07323919884814 8.77146317345824 8.80306394729925 0.119103212633255 0.119821379325534 0.116623030351981 0.118407303013267 0.119051652042941 0.117629516385994 0.118928327967238 0.120337358330336 0.121912165720041 0.118801732568260 0.116532352642558 0.116532352642558 0.116532352642558 0.123503082147298 0.121318055499945 0.120066218627537 0.121091035684415 0.118305426739481 0.12249498325625 1 1|0 +|/ 27031211 27032126 27031757.3 27030373 27032754 + gene protein_coding_gene FALSE TRUE AT1G71860.1|AT1G71860.2|AT1G71860.3 PTP1 (PROTEIN TYROSINE PHOSPHATASE 1) Encodes a protein with tyrosine phosphatase activity that is downregulated in response to cold and upregulated in response to salt stress. similar to protein tyrosine phosphatase [Fagus sylvatica] (GB:CAJ77612.1); contains InterPro domain Tyrosine specific protein phosphatase; (InterPro:IPR000242); contains InterPro domain Protein tyrosine phosphatase, catalytic region; (InterPro:IPR003595); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387)|similar to protein tyrosine phosphatase [Fagus sylvatica] (GB:CAJ77612.1); contains InterPro domain Tyrosine specific protein phosphatase; (InterPro:IPR000242) 0.357177688454927 4.88204813492596 0.00106118682341621 1 6.32960386373245 18.3788403862918 0.357177688454927 0.0403229000417514
AT1G06210_at 6.88967142536923 6.79684833381171 7.1542349987709 6.96585697998004 7.49141897746138 7.28236258059533 7.23135468897504 7.02267876895193 5.62977193781185 6.24111594670198 6.37371674086635 6.6152396676601 6.54618166024108 6.78006682485974 6.78988333552014 6.61609875727634 6.56664026355361 6.24011402788738 6.18972676955984 0.213425316989504 0.214927698207787 0.219379930253804 0.218024047016385 0.221972986698463 0.226737804174541 0.227191125098836 0.229416199697120 0.234745346403226 0.225190470699477 0.217023724836062 0.217952763019931 0.223319048737114 0.232809698607848 0.214324415554229 0.213013223161668 0.221202349222481 0.222901744264674 0.220377042798369 1 1 + 1898293 1898949 1898625.5 1897202 1899207 + gene protein_coding_gene FALSE TRUE AT1G06210.1|AT1G06210.2 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16880.2); similar to hepatocyte growth factor-regulated tyrosine kinase substrate-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58181.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942)|similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16880.2); similar to hepatocyte growth factor-regulated tyrosine kinase substrate-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58181.1); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.392058927483403 4.8810812000556 0.00106253527268896 1 6.32850596769389 13.3974021164516 0.392058927483403 0.0627195132825316
AT1G03380_at 7.59145797777477 8.0688437729324 8.0572727085352 8.30519858862173 8.82478067203193 8.11387973418077 8.22681594212011 7.8455484699261 6.86603017122821 7.04245043230452 8.01786587514778 7.9268199571546 7.99156814649414 7.98898934518693 7.57405460961611 8.505822520424 8.02165541821674 7.6556893262944 7.22153282908872 0.205516516083030 0.194268591486606 0.207587306475749 0.197616722050876 0.198844922665487 0.213320675450176 0.203888072312605 0.199543189375615 0.212912183611755 0.210943530802595 0.198941408903121 0.201093186962918 0.199828429420396 0.204521343990014 0.195851444805381 0.195298638402227 0.201879071775692 0.201775830146997 0.21896746254586 1 1 + 839746 840587 840171.182 835825 840891 + gene protein_coding_gene FALSE TRUE AT1G03380.1 AtATG18g (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) g) similar to AtATG18h (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) h) [Arabidopsis thaliana] (TAIR:AT1G54710.1); similar to Os05g0405900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85085.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.654543362048541 4.88053793015245 0.00106329371036712 1 6.3278890433407 15.6310477136107 0.654543362048541 0.167792490928445
AT4G19200_at 11.0184150114440 11.0698082227321 10.9814498627372 11.1049298974038 11.2728822743407 11.2726786072278 10.6712847262454 10.9545951879287 9.58994658562219 9.73525452679991 9.94644964381524 9.83222995017176 10.4115676734542 9.99310967105477 9.81251441795577 10.2352979477414 10.5753110765179 9.96491748674972 9.38846522627063 0.0878114003816336 0.0894324938404815 0.0953971206613381 0.0940988541937333 0.0894032984547253 0.0927089156893794 0.0904747217649742 0.0895279895484464 0.105149135732470 0.0951240733189742 0.094434643183041 0.0902297731730438 0.0885660028645938 0.102889859366205 0.0883016971055661 0.0874265487479151 0.0939201685094944 0.0925062303535624 0.0920904588722573 4 4|0 +|/ 10499357 10500259 10499948.8 10498887 10500733 + gene protein_coding_gene FALSE TRUE AT4G19200.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G45350.2); similar to Os05g0119300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054483.1); similar to hypothetical protein [Solanum lycopersicum] (GB:BAD95795.1); contains InterPro domain XYPPX repeat; (InterPro:IPR006031) 0.377330996937448 4.88021445329831 0.00106374558236834 1 6.32752168536129 20.8770788969225 0.377330996937448 0.0542170734259028
AT2G37970_at 10.0189893891529 9.9992698543025 10.2674791836985 10.293869677816 9.32398883558025 9.2539410074415 10.0666693233127 10.0190097675105 9.25761895926157 9.61442670337721 8.73666715513895 8.83558674350245 9.37775502220822 8.91597214114949 8.5788214501613 9.4650974665248 9.65807673568382 8.86828879662163 9.57365882209874 0.102081986821027 0.100209896330608 0.100209896330608 0.100209896330608 0.100609185620016 0.103767803216112 0.103630247442918 0.101773971135146 0.103280157642674 0.100209896330608 0.101561994953014 0.103694148226992 0.103675246416871 0.101588685344838 0.102318602515301 0.100209896330608 0.104635532518226 0.101926624138530 0.104200580875686 2 2 + 15898209 15898737 15898463.818 15898050 15898921 + gene protein_coding_gene FALSE TRUE AT2G37970.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT3G10130.1); similar to SOUL heme-binding protein; Bacterial regulatory factor, effector [Medicago truncatula] (GB:ABE83861.1) -0.334266606737132 -4.8777895534532 0.00106713961532004 1 6.32476723351877 19.173619471745 -0.334266606737132 0.0157312778760978
AT2G25870_at 7.02393434719501 6.7711598349893 6.80894194036875 6.35701050984648 6.32296540077593 6.17102872116009 7.54104527463395 7.59722562925676 6.68087279712573 6.75727178450851 6.75520344920332 6.74193812707474 6.43126673014275 6.46383312420308 7.18603246204802 6.69517848381167 6.4655153313555 6.5378775550265 6.82639262754786 0.161740042743503 0.155287307755445 0.163455797364196 0.160365529080739 0.159919485500987 0.175736911773480 0.161484285394185 0.164192516705666 0.166556244744744 0.158760013351371 0.156682880271820 0.155802007582846 0.157799442246802 0.160089632044032 0.161767122347039 0.156911864774488 0.167531166864209 0.161071089143701 0.166074713066989 2 2 + 11038890 11041303 11040270.882 11038193 11041532 + gene protein_coding_gene FALSE TRUE AT2G25870.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD86945.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Cof protein; (InterPro:IPR000150); contains InterPro domain Protein of unknown function UPF0054; (InterPro:IPR002036); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) -0.456797353508390 -4.8759231463565 0.00106975994319401 1 6.32264645055508 13.5313896544044 -0.456797353508390 0.0938935917825938
AT2G35120_at 5.03762884457166 5.29555616752575 4.63937853375687 4.9719873959462 5.32438099842152 4.8450811969857 5.04627341690773 5.26316510107265 5.69367745153001 5.44102874634451 6.77716825374315 7.29044256347651 6.2529392910105 7.3667978622538 7.69949497981167 6.2541871235786 6.6240298947774 6.78872982440768 5.78959390092054 0.214554833105738 0.210481228084465 0.214646834708437 0.216166025509567 0.209121619182161 0.213743353286638 0.206570701179492 0.214800647211138 0.211355151291379 0.21148250461343 0.208093451831102 0.205221334410075 0.214768179904411 0.212138825164824 0.209326133964342 0.205221334410075 0.206647796348078 0.20626858171567 0.210729057589019 2 2|0 -|/ 14813525 14814328 14813945.875 14812718 14814448 - gene protein_coding_gene FALSE TRUE AT2G35120.1 glycine cleavage system H protein, mitochondrial, putative similar to glycine cleavage system H protein, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT1G32470.1); similar to 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula] (GB:ABC75361.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Glycine cleavage H-protein; (InterPro:IPR002930); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) 0.51242075331276 4.87417993944984 0.00107221360489849 1 6.32066508942025 11.3145100020972 0.51242075331276 0.116593832994574
AT1G01220_at 7.81739492887265 7.43209663382083 7.12785103606455 6.56480757937645 7.15249062770122 7.21975332017114 7.38280734506351 7.49270899159768 7.92870175960107 7.73318559324943 7.45538754929218 7.68669796588044 6.71315686220448 7.1179307007002 7.55111175256948 7.17697030947976 7.23422217209941 7.28123317411367 7.75146639441295 0.172318628834984 0.170529554245987 0.166543419683009 0.172918468197676 0.173207055371636 0.172429998712455 0.176360787010895 0.164564355374212 0.173545105277914 0.169125659910477 0.180798539573547 0.164564355374212 0.169813300757631 0.181738996537570 0.173151447070747 0.164564355374212 0.17061856811827 0.171589334671539 0.164564355374212 1 1|0 +|/ 94880 95437 95144.3 91750 95552 + gene protein_coding_gene FALSE TRUE AT1G01220.1 GHMP kinase-related similar to GHMP kinase-related [Arabidopsis thaliana] (TAIR:AT5G14470.1); similar to Os03g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048749.1); similar to GHMP kinases putative ATP-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93641.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain L-fucokinase; (InterPro:IPR012887); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain GHMP kinase; (InterPro:IPR006204) -0.521194386152843 -4.86997207340232 0.00107816158368672 1 6.31588008453432 14.8145088377736 -0.521194386152843 0.120154702232999
AT2G35370_at 11.5720989644142 11.5139352092217 11.0842524381616 10.9700317743622 11.2369618178567 10.9593368336574 12.1009712433083 12.1016977423026 11.4803064420315 12.0330460496122 11.7955319375768 12.0297015902484 11.5748811513338 11.5493173504031 12.0999047853187 11.9995441324273 11.4451227656206 11.798871286957 11.8136685530851 0.0820417006043021 0.0826407778028918 0.0849874868754781 0.0827406049006229 0.0821638999654315 0.0833933049098717 0.0822383923039241 0.0831730513619276 0.0929235363100071 0.0836447723476687 0.084492300324761 0.0818837199922003 0.082644691588344 0.0876958395720737 0.0841285683127984 0.0818837199922003 0.0856183078348938 0.0877535963167522 0.0830038092341687 2 2|0 +|/ 14898324 14899036 14898654.375 14898181 14899297 + gene protein_coding_gene FALSE TRUE AT2G35370.1 GDCH (Glycine decarboxylase complex H) Encodes glycine decarboxylase complex H protein. Involved in photorespiration. Identical to Glycine cleavage system H protein 1, mitochondrial precursor (GDCSH) [Arabidopsis Thaliana] (GB:P25855); similar to glycine cleavage system H protein, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT1G32470.1); similar to Glycine cleavage system H protein, mitochondrial precursor (GB:P16048); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Glycine cleavage H-protein; (InterPro:IPR002930); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.374297190196371 -4.8680417219847 0.00108090216681244 1 6.31368389903755 23.2235522811916 -0.374297190196371 0.0529178248132169
AT3G50900_at 6.32105497639731 6.37486467698201 5.67683509885282 6.06963692189465 6.75520688159369 6.00398517607627 4.02787172915358 3.36859006546295 5.00777134308527 4.63699961242112 5.72390126474812 6.35032936578824 4.51188470010854 5.70810341913132 5.29985562771712 3.63385116598856 4.55690793193484 4.34196010026782 4.47447841941084 0.278174232819738 0.278343376415087 0.274383828857396 0.282616901066122 0.283908772300329 0.277584007206758 0.286813912664609 0.276457418104083 0.289073305399386 0.275569041864173 0.284480279520954 0.277638971134099 0.293081722025172 0.283545832144491 0.279922506325394 0.274199441073016 0.270077660070566 0.275896902905165 0.270077660070566 3 3 + 18929136 18929421 18929284.091 18929000 18929599 + gene protein_coding_gene FALSE TRUE AT3G50900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66490.1); similar to hypothetical protein [Thellun (GB:ABB45855.1) 0.70637669813011 4.86660651465559 0.00108294467115216 1 6.31205060801775 10.4358885184348 0.70637669813011 0.186078037702794
AT2G04520_at 9.73798674146916 9.74340293437022 9.75862492163163 10.0422086035167 9.9472432111941 9.72954699249336 9.78144424427645 9.54560021869932 9.6268689248249 9.32765839082798 10.1963375658503 10.2406561837871 10.0746606023202 10.1455478629013 10.1265571096397 10.1904816804653 9.8141871460763 9.86250680752315 9.31653353255835 0.111372567328176 0.111023573649617 0.117111790507790 0.114778375494658 0.108497194873733 0.126073642518819 0.110580788555017 0.112333508842461 0.118663673082992 0.112847047998677 0.108497194873733 0.114153133449185 0.111697685797270 0.114470764700978 0.114006305741317 0.11495811514544 0.117965139014625 0.116069318353146 0.111178730151087 2 2 - 1574880 1575110 1575000.364 1574589 1575860 - gene protein_coding_gene FALSE TRUE AT2G04520.1 eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative similar to eukaryotic translation initiation factor 1A, putative / eIF-1A, putative / eIF-4C, putative [Arabidopsis thaliana] (TAIR:AT5G35680.2); similar to putative translation initiation factor eIF-1A-like [Solanum tuberosum] (GB:ABB55392.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain S1, IF1 type; (InterPro:IPR006196); contains InterPro domain Eukaryotic initiation factor 1A (eIF-1A); (InterPro:IPR001253) 0.412488658960929 4.86296278630686 0.00108814903064122 1 6.30790230601354 19.5382841430685 0.412488658960929 0.0741237968891603
AT3G11700_at 7.60386095016014 7.98820447782893 6.1856163564329 6.99446345987294 7.78247136280144 7.61248867928997 9.03353718070247 9.14626441783952 9.77331591107347 8.76499431815677 10.3130995969507 9.6263710256778 9.3947596455351 9.99865628492948 9.65127483366424 9.03430185612166 7.60357568915971 9.35288308635389 9.43792670860834 0.166473535918403 0.161689010789494 0.197797351189501 0.176010521473941 0.167364171763517 0.169122865316878 0.163156407058369 0.164989375458903 0.163914507084211 0.163713156731925 0.165117325721903 0.157788530438593 0.157788530438593 0.161550735294098 0.159851149969927 0.159230309270477 0.171678799436296 0.165605541739223 0.1591321198114 3 3 + 3699792 3700228 3700009.545 3698845 3701499 + gene protein_coding_gene FALSE TRUE AT3G11700.1 beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein Identical to Fasciclin-like arabinogalactan protein 18 precursor (FLA18) [Arabidopsis Thaliana] (GB:Q93W32;GB:Q9SRM7); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52370.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06390.1); similar to beta-Ig-H3 domain-containing protein / fasciclin domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G35860.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71191.1); contains InterPro domain Beta-Ig-H3/fasciclin; (InterPro:IPR000782) -0.62637692617362 -4.86027984454991 0.00109199841853087 1 6.30484630087893 17.142002143072 -0.62637692617362 0.158942501043202
AT4G17570_at 7.15238676869823 7.73440556896662 7.79945920008258 7.93672327565398 8.54318143025472 7.88844820784943 7.42382136153988 7.32796497963516 6.49327335310071 6.21593782964191 6.52976271260219 7.01376035021498 7.0652478144994 6.80985709437829 6.38371366898691 7.03212800736292 7.09048399470905 7.21863972044775 6.18847996988809 0.22133514342959 0.211644220272465 0.215667752230317 0.211051548165069 0.211208031270231 0.217871560111610 0.211410129631049 0.218580282302096 0.234131910425177 0.214370915744141 0.212736638391144 0.21468134440713 0.219105881848893 0.214799935967252 0.222471772787189 0.207623617898857 0.224304781481789 0.212057443918941 0.2233373848415 4 4|0 -|/ 9784345 9785159 9784695.3 9783897 9787433 - gene protein_coding_gene FALSE TRUE AT4G17570.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 28 [Arabidopsis Thaliana] (GB:Q8W4H1;GB:O23598); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G47140.1); similar to GATA zinc finger containing protein [Brassica oleracea] (GB:ABD65071.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.613013572470075 4.85797947825545 0.00109531065330216 1 6.30222503038722 14.3218886263903 0.613013572470075 0.154344130778249
AT3G11100_at 5.8695423299225 5.66855806585517 6.05026698088286 5.91788900994373 6.95702854669711 6.44871789130878 5.1013800257718 4.73082215646038 5.05595436211184 4.40849737241384 4.8133299792212 4.69615395081681 4.73543439248955 5.07967106120042 4.33521463033284 4.93650269344564 5.15516255719776 4.79586436462428 4.93482043766255 0.206842597367366 0.207935374857289 0.210294403408806 0.202216133898426 0.204380135843340 0.217669280513854 0.203156396527599 0.202216133898426 0.206064851609149 0.206763159202388 0.204815180956069 0.202216133898426 0.208113441928798 0.211255259023850 0.205548884962706 0.202216133898426 0.203981719321311 0.212431065625734 0.204462593611096 3 3 - 3476777 3477138 3476980.636 3476193 3477411 - gene protein_coding_gene FALSE TRUE AT3G11100.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G05550.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.509779637821156 4.85004019266792 0.00110682610824783 1 6.29317084192362 10.6521126730530 0.509779637821156 0.116553499122427
AT2G32100_at 8.25986548926545 8.6736053301309 6.79582908837305 7.41804522301793 7.86937677725837 8.0750752291843 8.49472768982434 9.08141951707862 9.28521837377622 8.842376697509 9.08643987450785 9.22298032342446 9.35775985986775 9.40416714426386 8.61042402509285 9.19845569029664 8.36451409064862 8.40607087529308 9.38749412141063 0.142104216653515 0.144298378897167 0.188068421485553 0.157282017875373 0.155931271747710 0.156524139090821 0.149004614166384 0.154989601644498 0.153584058426915 0.146250786165043 0.142104216653515 0.145564760209494 0.146789164729311 0.151670980551991 0.147885994178807 0.146890275379073 0.167810519338550 0.147443851578288 0.149761075337932 2 2 + 13655076 13655623 13655413.364 13654929 13655862 + gene protein_coding_gene FALSE TRUE AT2G32100.1 ATOFP16/OFP16 (Arabidopsis thaliana ovate family protein 16) similar to ATOFP12/OFP12 (Arabidopsis thaliana ovate family protein 12) [Arabidopsis thaliana] (TAIR:AT1G05420.1); similar to ethylene receptor [Litchi chinensis] (GB:AAQ56281.1); contains InterPro domain Protein of unknown function DUF623, plant; (InterPro:IPR006458) -0.651583919628659 -4.8493600987961 0.00110781862641079 1 6.29239471252624 17.1475169845115 -0.651583919628659 0.168215251220425
AT4G14570_at 7.49044816363083 6.89979265573041 7.71066307310332 7.46222356735096 7.81070408078473 7.26581727698755 7.97759074469325 7.79006075774181 5.46173167593432 4.88304257129416 5.82416922998781 5.77884176230979 6.46161821388432 6.12813088297639 6.71608269229385 6.6701230746441 6.79980204008346 6.01201837321119 5.03771477538898 0.217087157421857 0.217032276550366 0.217015201700201 0.217015201700201 0.218111348203144 0.217015201700201 0.220063787081529 0.217975916429506 0.223391469401392 0.223245443448559 0.217015201700201 0.217015201700201 0.217015201700201 0.217015201700201 0.220482650440698 0.220455323858653 0.235347618395840 0.230821398839862 0.220664925180262 4 4|0 +|/ 8363681 8365091 8364641.333 8362582 8366649 + gene protein_coding_gene FALSE TRUE AT4G14570.1 acylaminoacyl-peptidase-related similar to serine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G36210.1); similar to Os10g0415600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064602.1); similar to prolyl oligopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47613.1); similar to prolyl oligopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47614.1); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.597115430954471 4.84798449095515 0.00110982911598631 1 6.2908246000546 13.2640848522760 0.597115430954471 0.149135095729821
AT1G17470_at 8.67880647911964 8.83573975799291 8.0235742579419 8.05372248404837 8.62439637765457 8.2671606368143 8.71685169018253 8.64217604098962 8.4315031089205 8.15061787781654 7.9324737422359 7.88424539513885 7.96116433128927 7.85135387918525 8.1277948854411 7.75817901770393 7.99386842462499 7.9010427644969 8.17095334846804 0.151936731269088 0.161877922905871 0.15355147998786 0.159494068138089 0.152738915346944 0.164762646873446 0.153021542404477 0.165978540207045 0.158251522787984 0.154900159932589 0.148729482717639 0.149164477628278 0.150956046489805 0.158339311505603 0.157619393731575 0.150394865930629 0.151853338196915 0.157615097208398 0.155727186872931 1 0|1 /|+ 6005380 6006091 6005789.556 6002905 6006398 + gene protein_coding_gene FALSE TRUE AT1G17470.1|AT1G17470.2 ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1); GTP binding|ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) Encodes a member of the DRG (developmentally regulated G-protein) family expressed throughout the plant, with highest expression in actively growing tissues. similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G72660.3); similar to developmentally regulated GTP binding protein [Pisum sativum] (GB:AAB67829.1); similar to Os05g0357600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055297.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain TGS-like; (InterPro:IPR012676); contains InterPro domain GTP1/OBG domain; (InterPro:IPR006074) -0.400469763171783 -4.84143814215788 0.00111945111567462 1 6.28334793032179 16.5689485073011 -0.400469763171783 0.0689467669375988
AT3G49470_at 9.70606315689072 9.6588198068391 9.39035151781067 9.2738238710997 9.59007073480287 9.59390250808146 10.0261032778068 10.1273099083556 9.90045108460483 9.978942709437 9.65359944035097 9.64749211233956 9.65343414000012 9.6589214283148 9.75695672440451 9.69938999750113 9.49924897080758 9.65949075264884 9.87231504396726 0.095989624321695 0.0965968126354555 0.095884072806663 0.102334898279233 0.0966890080014145 0.102760835175888 0.0957194996581694 0.100497938266136 0.099727082775324 0.0951734269655822 0.0983681746045693 0.0953380577633068 0.0970633425400345 0.0972000269605086 0.0948088191600496 0.0940239904934652 0.0979037831235655 0.0972498842691783 0.0971310239277123 3 3 + 18352115 18353175 18352950.364 18351961 18353466 + gene protein_coding_gene FALSE TRUE AT3G49470.1 nascent polypeptide-associated complex (NAC) domain-containing protein Identical to Nascent polypeptide-associated complex subunit alpha-like protein 2 (NAC-alpha-like protein 2) (Alpha-NAC-like protein 2) [Arabidopsis Thaliana] (GB:Q94JX9;GB:Q9S7G0); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.1); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABE85161.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.340603231532399 -4.84109399753484 0.00111995944329564 1 6.28295466349259 19.456207085277 -0.340603231532399 0.0279407412337016
AT1G14400_at 10.9896569947842 11.0231075768227 11.1283601519756 11.0837442166193 11.6472064389511 11.4051889185046 10.7836879578987 10.7362006992741 10.7634348354821 10.4568628567001 10.8632500369130 10.8764069870276 11.0414015307001 11.037156572566 10.8380616818531 10.9256842387036 10.7316786253043 10.8737845731022 10.6239369559783 0.0908923651097392 0.0875489648902779 0.0931999937866982 0.0926366979011337 0.089930520031604 0.0949944539355282 0.0875489648902779 0.0896158908553962 0.0946166312256852 0.0902750513900616 0.0919936643276905 0.0910137421894595 0.0875489648902779 0.0931370072558366 0.0893224752343833 0.0875987667375703 0.093196545374367 0.090396137586456 0.087965066129262 1 1|0 -|/ 4927366 4928107 4927766.25 4927006 4928656 - gene protein_coding_gene FALSE TRUE AT1G14400.1|AT1G14400.2 UBC1 (UBIQUITIN CARRIER PROTEIN 1); ubiquitin-protein ligase ubiquitin carrier protein Identical to Ubiquitin-conjugating enzyme E2-17 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 2) (Ubiquitin carrier protein 2) (UBC2) [Arabidopsis Thaliana] (GB:P42745); Identical to Ubiquitin-conjugating enzyme E2-17 kDa 1 (EC 6.3.2.19) (Ubiquitin- protein ligase 1) (Ubiquitin carrier protein 1) (UBC1) [Arabidopsis Thaliana] (GB:P25865); similar to ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G02760.1); similar to ubiquitin carrier-like protein [Solanum tuberosum] (GB:ABC01903.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.358322386184383 4.83594850418185 0.00112758962365074 1 6.2770721584659 21.8562305760995 0.358322386184383 0.043758213371993
AT2G21860_at 8.59595175865896 8.72431756842525 8.15698251329425 8.30853680342377 8.28603913850911 8.21492494741001 9.41810936577932 9.64445097757278 8.60616036668185 8.97367752034087 8.6921595913233 9.22447915470844 8.76625549033207 8.86929254577363 9.44625177161138 8.82634244629913 8.48454943683 8.6571217564377 8.7069132663967 0.106646853361080 0.104914867812586 0.116773009060290 0.110704807182219 0.113165970922777 0.117702607878109 0.112867862210261 0.112473812019705 0.109240251639508 0.104914867812586 0.110269025877031 0.104914867812586 0.107136052934346 0.109524217665669 0.110440036470136 0.111071089644182 0.119673534273262 0.109227753040212 0.107912049215680 2 2 - 9325464 9325904 9325696.818 9325338 9327082 - gene protein_coding_gene FALSE TRUE AT2G21860.1 violaxanthin de-epoxidase-related similar to NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1) [Arabidopsis thaliana] (TAIR:AT1G08550.2); similar to Os01g0716400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044070.1); similar to hypothetical protein MtrDRAFT_AC155898g25v1 [Medicago truncatula] (GB:ABE87708.1); contains InterPro domain Calycin-like; (InterPro:IPR011038) -0.372765213629233 -4.83513610891785 0.00112879945276049 1 6.27614296176561 17.4851925884530 -0.372765213629233 0.0535447566355475
AT1G14360_at 7.68791042268387 8.26266729801741 8.76145017595469 9.3069914434511 8.00919728816004 7.53537886231528 5.92151650568331 5.97475254327775 5.90086161200975 5.48401390015893 5.34306612412923 5.56500788927615 4.93358077595427 4.99133321976001 5.41758793591132 5.12996856712588 5.61829415505313 5.18886090916261 5.00305604183599 0.219112683018729 0.221295922090701 0.228678545904246 0.224191246361292 0.225097004847679 0.225164040161918 0.220831906430461 0.227901898896667 0.224988252723568 0.224070382040874 0.222048458653682 0.219112683018729 0.226031020374143 0.224150851913649 0.223782942355930 0.219112683018729 0.224004246528081 0.225806748949477 0.235942008954087 1 1|0 -|/ 4911414 4912113 4911662 4911088 4913147 - gene protein_coding_gene FALSE TRUE AT1G14360.1 ATUTR3/UTR3 (UDP-GALACTOSE TRANSPORTER 3); pyrimidine nucleotide sugar transporter similar to ATUTR1/UTR1 (UDP-GALACTOSE TRANSPORTER 1), UDP-galactose transporter/ UDP-glucose transporter/ pyrimidine nucleotide sugar transporter [Arabidopsis thaliana] (TAIR:AT2G02810.1); similar to hypothetical protein MtrDRAFT_AC149601g16v1 [Medicago truncatula] (GB:ABD32994.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.626180672883189 4.8344426458859 0.00112983327911243 1 6.27534970207104 13.0505362166337 0.626180672883189 0.160045039571514
AT4G34290_at 6.0761804121342 6.20800472089978 4.22032011895473 4.11597442418811 4.10569834179703 3.85756835810959 5.27864762537604 6.82834524101852 4.43121445713999 5.25168612545402 4.41839697210431 5.63895669635646 5.14986499613116 4.63467359176907 6.44782316169388 5.17941036727878 4.70453031525055 4.06829675199436 5.14794629078342 0.221604662743534 0.219380959695963 0.227310754832366 0.222629772781877 0.225517079782322 0.226436639311797 0.216196239286964 0.219777112574559 0.231004595472287 0.216401190556486 0.217581419981629 0.225391256269493 0.216278837344693 0.225425993945113 0.217608953710698 0.214101555774759 0.219458786204337 0.225680549227285 0.216629890701898 4 4|0 +|/ 16410901 16412026 16411150.4 16410836 16412389 + gene protein_coding_gene FALSE TRUE AT4G34290.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G14880.1); similar to Os03g0761000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051349.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.968137853490792 -4.83398511366668 0.00113051593748344 1 6.27482627841718 10.0732722708255 -0.968137853490792 0.273152238835294
AT4G24390_at 7.09158394522989 6.89290195340292 6.82512966497259 7.00606251922487 7.25642585889044 7.33863708334932 6.25563734515104 6.70950204967164 5.9909549747002 5.91704476522848 6.76535604530901 6.81087720072616 6.83732166928497 6.39750849987053 6.55188041975407 6.30531865213042 6.1496069405739 6.43832170884104 6.09943687480186 0.210741412673985 0.217838816531474 0.222898205266333 0.220011871604655 0.220457538831761 0.230617627601694 0.209643362276534 0.221675659286232 0.228917710801644 0.221016633076934 0.214007769879485 0.213242401685852 0.213245319443550 0.222242630957161 0.211495711811804 0.208745535154223 0.232162777296255 0.219823185860667 0.209715552716240 4 4 - 12613964 12614462 12614188.364 12613086 12616127 - gene protein_coding_gene FALSE TRUE AT4G24390.1|AT4G24390.2 F-box family protein (FBX14) similar to AFB5 (AUXIN F-BOX PROTEIN 5), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G49980.1); similar to Os02g0759700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048183.1); similar to F-box containing protein TIR1 [Populus tremula x Populus tremuloides] (GB:AAK16647.1); similar to Putative F-box containing protein TIR1 [Oryza sativa (japonica cultivar-group)] (GB:AAN64135.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553) 0.449351239364925 4.83355936670951 0.00113115157222028 1 6.27433918350507 13.1892364343056 0.449351239364925 0.0923799263063843
AT1G62960_at 7.73505661603788 7.91746846111056 8.19935947993155 8.28614850948858 8.73445601074039 8.05972232184994 9.45959931243362 9.17179460438773 9.74664342453299 9.84579747783347 9.3228647195071 8.84049635604154 8.86691833888083 8.98390874000223 8.5153928541653 9.39128628847602 8.89315244241975 8.98571099600519 9.86355819683994 0.146409468342211 0.143997037629806 0.148873118071920 0.151753472124006 0.142457507287834 0.151122882076756 0.138992944524038 0.150083454508472 0.151485757188970 0.144760584777130 0.143684189720788 0.140500581658813 0.137642398474483 0.151019972247434 0.145314395233346 0.137642398474483 0.163032054346219 0.143269686471744 0.139103151426817 1 1 - 23322017 23322400 23322238.545 23321852 23323981 - gene protein_coding_gene FALSE TRUE AT1G62960.1 ACS10 (ACC SYNTHASE 10); 1-aminocyclopropane-1-carboxylate synthase Encodes an aminotransferase with broad specificity for aspartate and aromatic amino aids such as tyrosine and phenylalanine. It does not act on branched chain amino acids and does not have ACC synthase activity. Identical to Probable aminotransferase ACS10 (EC 2.6.1.-) (ACS10) [Arabidopsis Thaliana] (GB:Q9LQ10); similar to ACS12 (1-Amino-cyclopropane-1-carboxylate synthase 12), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT5G51690.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Rosa hybrid cultivar 'Kardinal'] (GB:AAQ88100.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.547379096227361 -4.83164872488896 0.00113400890742447 1 6.27215282354675 17.8422670186672 -0.547379096227361 0.131669868642211
AT2G02450_at 8.1426198403461 8.48453346037678 8.56567202644356 8.48292147484601 9.03794945382835 8.7076740625387 8.4552712448226 8.3214010416411 7.40711070458513 7.8033246222226 8.51984855370052 8.66587597727556 8.03982122498207 8.28833488519147 7.53977310350528 7.69898970378989 7.44912332333803 7.64808636183618 7.15956484869068 0.168269828484831 0.160586968006694 0.163363249377665 0.156994247723203 0.155264646787921 0.160010363230279 0.162711949614164 0.155264646787921 0.176357085392791 0.160811109332532 0.162422477233956 0.157726708582988 0.163074433536980 0.158062896697304 0.162146012550054 0.157123473977345 0.172556084511242 0.169873543527117 0.172739786893278 2 2 + 650051 650513 650285.727 648043 650813 + gene protein_coding_gene FALSE TRUE AT2G02450.1|AT2G02450.2 ANAC034/ANAC035 (Arabidopsis NAC domain containing protein 34, Arabidopsis NAC domain containing protein 35); transcription factor similar to ANAC009 (Arabidopsis NAC domain containing protein 9), transcription factor [Arabidopsis thaliana] (TAIR:AT1G26870.1); similar to Os01g0888300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045038.1); similar to putative NAC transcription factor [Oryza sativa (japonica cultivar-group)] (GB:BAD82368.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.436081387076877 4.82910168064701 0.00113783013887421 1 6.26923719542084 16.2437045090397 0.436081387076877 0.086658000741886
AT2G31955_at 7.08768563377948 7.19472706910872 7.57217811713597 7.47056022106469 7.43168024030236 7.3538720634323 7.25799623363222 6.96341095160518 5.9787994092832 6.26030477019789 6.37848263699281 6.71417462719159 6.34648460427168 6.6996819584594 6.16081297925834 6.66091703014088 6.88320508809866 6.7684954386072 6.2009285008746 0.172073277331359 0.165750589682810 0.166520519957492 0.173582857527850 0.168589373017664 0.169248379818594 0.171678250908519 0.170425555444757 0.167880331165571 0.174456182293772 0.169059426544997 0.165763884208455 0.172592687857119 0.169114586138731 0.177074893033852 0.164232647116556 0.169952678157522 0.173971330593960 0.172932119004667 2 2 - 13591757 13593532 13592482.786 13591216 13593777 - gene protein_coding_gene FALSE TRUE AT2G31955.1|AT2G31955.2 CNX2 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2); catalytic COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 2. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli moaA. Expression is abundant in all tissues examined, particularly in roots. Appears to have targeting signals for chloroplast or mitochondria. Identical to Molybdopterin biosynthesis protein CNX2 (Molybdenum cofactor biosynthesis enzyme CNX2) (CNX2) [Arabidopsis Thaliana] (GB:Q39055); similar to Os02g0258900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046477.1); similar to putative molybdenum cofactor biosynthesis protein A [Oryza sativa (japonica cultivar-group)] (GB:BAD20064.1); contains InterPro domain MoaA/nifB/pqqE; (InterPro:IPR000385); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Molybdenum cofactor biosynthesis protein A; (InterPro:IPR013483); contains InterPro domain Molybdenum cofactor synthesis C-terminal; (InterPro:IPR010505); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) 0.38048596185572 4.82712441753402 0.00114080616713692 1 6.26697299115102 13.6531184940057 0.38048596185572 0.0585883117303414
AT1G60000_at 9.93496972485338 10.2150446077820 9.54970427360565 9.79632490722618 10.1128422483725 9.93424103411397 10.7922967195742 10.8985537486256 10.9275201761046 10.7384336613238 10.6375233358209 10.9326778879016 10.4168077678174 10.5869288929183 10.7214189274253 10.7845886805681 10.3063006263632 10.4560993251022 10.7674163392165 0.0930659631043699 0.0891461915456471 0.0910530009380746 0.0952769716413079 0.0907592140626706 0.0922172745712734 0.0895055741937845 0.089575116673624 0.0998489667222286 0.0905265103951 0.0886915064167506 0.0885943492775302 0.0893182182752727 0.092513956974436 0.0888332774151998 0.088352843469299 0.0964049431930892 0.0932333481246174 0.0907872719086603 1 1|0 -|/ 22097359 22097938 22097647.3 22097234 22098291 - gene protein_coding_gene FALSE TRUE AT1G60000.1|AT1G60000.2 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to Os02g0815200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048500.1); similar to chloroplast RNA binding protein [Phaseolus vulgaris] (GB:CAA57551.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)| -0.408884148052285 -4.82530302628385 0.00114355505105924 1 6.2648866520061 20.8624554443715 -0.408884148052285 0.0739193889786932
AT4G34390_at 7.21478794324744 7.3591470376791 8.00250368186779 7.7335773342498 7.09521474505493 6.97581462756941 5.75576597254044 6.00496127593851 6.55275643296352 6.27299209980581 6.54090340314368 6.32068931451885 6.18740685877652 6.36742463977972 5.99167359323534 6.11348597731396 6.4028899771478 6.08136069438963 6.11036171326166 0.187101991953164 0.191764953105135 0.189736912674153 0.185415721590959 0.194076677954175 0.185709507427240 0.194246006803761 0.191160938270236 0.197346728429299 0.199341623532993 0.195207250905282 0.19041724625154 0.199488728024410 0.200274600721471 0.183861445950956 0.191690293784942 0.192371590109226 0.190897691666364 0.196788270766468 4 0|4 /|+ 16444317 16444816 16444558.1 16441183 16445009 + gene protein_coding_gene FALSE TRUE AT4G34390.1 XLG2 (extra-large GTP-binding protein 2); signal transducer similar to XLG1 (EXTRA-LARGE G-PROTEIN 1), signal transducer [Arabidopsis thaliana] (TAIR:AT2G23460.1); similar to extra-large guanine nucleotide binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99166.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) 0.40340229922265 4.82298026114341 0.00114707103398476 1 6.26222513459193 13.2991046052510 0.40340229922265 0.0712505406158983
AT2G32090_at 9.61892562122924 9.7279107538021 10.0321601744046 10.1604453578633 10.6346641506349 10.2715497987860 9.6862091909686 9.98216364921572 9.65006185867801 9.78973376950492 10.4528246494998 10.0113027222668 10.4643112683595 10.3914250955619 10.0248999466555 10.2631444410964 9.98532619421381 9.87241963896195 10.0662621996811 0.100357167544050 0.100927720947440 0.107257498132389 0.101821872299865 0.100361606432880 0.110275828163757 0.101702537544058 0.102842843949894 0.106426685902723 0.105034326129789 0.105832230489229 0.102123779165105 0.103545465300115 0.105806084173627 0.102891797241885 0.100653728624840 0.105300140984476 0.105050581409817 0.107237206077473 2 2|0 +|/ 13651579 13652185 13652059.556 13651472 13652906 + gene protein_coding_gene FALSE TRUE AT2G32090.1|AT2G32090.2 lactoylglutathione lyase family protein / glyoxalase I family protein similar to lactoylglutathione lyase family protein / glyoxalase I family protein [Arabidopsis thaliana] (TAIR:AT2G28420.1); similar to Glyoxalase/bleomycin resistance protein/dioxygenase [Medicago truncatula] (GB:ABE82970.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.434378350953618 4.82282589987922 0.00114730510611952 1 6.26204822661814 20.0235332640455 0.434378350953618 0.0861415848638586
AT3G06680_at 7.19310186536575 7.09023739482659 6.3741197532433 6.48729249367024 6.44256389340986 6.26126467508144 6.90355108274258 7.40684965362529 7.03785398288932 6.861262293157 6.55099457840754 7.60508987943277 6.56375005338499 6.7534564442501 7.85057955851002 6.69413235658685 5.7124226158628 6.09397373882731 6.75757175953453 0.183597024556495 0.180781678832021 0.187021435328874 0.186529509988853 0.182500814814676 0.190097972591760 0.189061699577929 0.185089557029813 0.178919659783392 0.190080859764822 0.184712160114961 0.183325136723513 0.189751988550164 0.179068522773379 0.181516142750392 0.185520455542674 0.189658810273726 0.189242634524548 0.187468908194749 3 3|0 -|/ 2114409 2114689 2114581.2 2114260 2114885 - gene protein_coding_gene FALSE TRUE AT3G06680.1 60S ribosomal protein L29 (RPL29B) Identical to 60S ribosomal protein L29-2 (RPL29B) [Arabidopsis Thaliana] (GB:Q84WM0;GB:Q9M7X5); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G06700.3); similar to Ribosomal L29e protein [Medicago truncatula] (GB:ABE83198.1); contains InterPro domain Ribosomal L29e protein; (InterPro:IPR002673) -0.457318785328997 -4.82233499481147 0.00114804985445866 1 6.26148558901478 13.576678892338 -0.457318785328997 0.0962856035973722
AT4G23740_at 6.79509836007111 6.56337487122057 6.32653570208473 6.2546543237252 6.77834444641376 6.6656448048745 7.88693728112638 7.5769979195991 7.72915612666465 7.77048861075855 7.79999912915824 7.89352887123295 7.50437369945097 7.88400896492985 7.73951785119439 7.7208231113265 6.99206579584336 7.6341546720324 7.75361708901313 0.201194467700904 0.19305013993021 0.209871607014045 0.199508828574473 0.191884587229249 0.193667902112935 0.19241553536665 0.194434636310235 0.204260712863334 0.203503572472594 0.19101990413303 0.188303094032027 0.199657255385548 0.190336477069952 0.193867851171475 0.191818803939536 0.199763040845139 0.194641022834133 0.198479687016677 4 4|0 +|/ 12368599 12369137 12368846.9 12366396 12369348 + gene protein_coding_gene FALSE TRUE AT4G23740.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G64210.1); similar to putative receptor-like kinase [Oryza sativa (japonica cultivar-group)] (GB:BAA94519.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.40216777615622 -4.81750706238437 0.00115540223758626 1 6.25594985742744 14.5545216073268 -0.40216777615622 0.0708523761651977
AT3G53720_at 8.26808648730396 8.38542544697572 7.70691528963517 7.71888725254724 7.91465379174206 7.63455354330974 7.41495261764543 7.60218548820567 7.81928562837454 8.16624991265515 7.21654325701542 7.67097727899965 7.43962038581353 7.44027908660227 7.25143286427997 7.8978212132179 7.77973139876459 7.41218277820425 8.34483635988044 0.175615785246168 0.179169805107354 0.188131600132643 0.179960249650248 0.177720838801871 0.187247928834472 0.178325673067525 0.176743205588469 0.195880283835169 0.199678518651150 0.17939840436358 0.17958419505413 0.181940577819875 0.182998681432670 0.195063453014433 0.177207578398701 0.181001432763201 0.192113277241215 0.181488725259935 3 3 - 19916896 19917436 19917142.818 19916656 19921090 - gene protein_coding_gene FALSE TRUE AT3G53720.1 ATCHX20 (CATION/H+ EXCHANGER 20); monovalent cation:proton antiporter member of Putative Na+/H+ antiporter family similar to ATCHX18 (cation/hydrogen exchanger 18), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT5G41610.1); similar to ATCHX19 (CATION/H+ EXCHANGER 19), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT3G17630.1); similar to ATCHX17 (CATION/H+ EXCHANGER 17), monovalent cation:proton antiporter [Arabidopsis thaliana] (TAIR:AT4G23700.1); similar to Na+/H+ antiporter-like protein [Medicago truncatula] (GB:ABD32192.1); similar to cation/hydrogen exchanger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99860.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32190.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.385230237415993 -4.8170274845633 0.00115613535921209 1 6.255399740417 15.6425562395867 -0.385230237415993 0.0617744690036715
AT4G01550_at 5.9859384819781 6.49101444339327 6.49359774230511 6.09367673836747 7.78139010090941 6.94855500731233 6.34181943581121 5.41909475221751 3.79930470320008 4.3802516720805 5.44322427129795 4.95517848595802 4.98692408170236 5.16663205797782 4.86787751669278 5.01411539486316 5.32049137150487 4.73737168395793 4.10323570786814 0.322910055785414 0.329057992908211 0.329120659791170 0.322910055785414 0.327903172203299 0.344218690763445 0.343785095099059 0.338220924263629 0.370644091511878 0.322910055785414 0.324239870899166 0.322910055785414 0.334800233896384 0.325167525770148 0.322910055785414 0.322910055785414 0.338104900720663 0.326878672784376 0.327776702549240 4 4 - 674127 674735 674497.5 673862 676411 - gene protein_coding_gene FALSE TRUE AT4G01550.1|AT4G01550.2 ANAC069 (Arabidopsis NAC domain containing protein 69); transcription factor|ANAC069 (Arabidopsis NAC domain containing protein 69) similar to ANAC068/NTM1 (NAC WITH TRANSMEMBRANE MOTIF1), transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G01540.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); similar to Os08g0157900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061034.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441)|similar to ANAC068/NTM1 (NAC WITH TRANSMEMBRANE MOTIF1), transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT4G01540.1) 0.868525474575839 4.81525370072476 0.00115885129057325 1 6.2533646955517 11.0222562806421 0.868525474575839 0.242281082547793
AT1G76050_at 7.33257767900613 6.84382096832863 6.59219511168654 6.20146246458264 6.73055480087498 6.86562367761176 7.25440153066478 7.2457663359598 6.93611191900054 6.93059678680274 6.25100891855757 6.14846560286736 6.55716446870205 6.75980800463034 6.78331433859949 6.49522229969388 6.77959075951796 6.56110152519967 6.99200918515021 0.165159355755786 0.160852144927479 0.163463910112170 0.166601503246210 0.174833927854259 0.162307623437745 0.175340982302718 0.169566424365883 0.169627150859020 0.161605229675887 0.167318521446712 0.161872574958917 0.160889262660569 0.163294929280561 0.158661462680002 0.166264234998160 0.172340801847122 0.176968891789357 0.165886285376692 1 1|0 +|/ 28546710 28547665 28547294.222 28545717 28548121 + gene protein_coding_gene FALSE TRUE AT1G76050.1|AT1G76050.2 pseudouridine synthase family protein similar to Pseudouridine synthase, RluD [Medicago truncatula] (GB:ABE81887.1); contains InterPro domain Pseudouridine synthase, Rlu; (InterPro:IPR006224); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145); contains InterPro domain RNA-binding S4; (InterPro:IPR002942)|similar to pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G52260.2); similar to Pseudouridine synthase, RluD [Medicago truncatula] (GB:ABE81887.1); contains InterPro domain Pseudouridine synthase, RluD; (InterPro:IPR006225); contains InterPro domain Pseudouridine synthase, Rlu; (InterPro:IPR006224); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) -0.491314544365485 -4.81219541058141 0.00116355023800532 1 6.24985460983724 13.6307330477755 -0.491314544365485 0.110791927443239
AT1G14740_at 6.95703133430871 6.89481431755633 6.63167413068305 6.59794044584343 6.94491193584763 7.16789160885771 5.48904875802575 5.17117721390564 5.39869345742306 5.58980406875815 5.52573403700324 6.02910265699779 5.01178594484981 5.86960931432629 5.22119053662742 5.93505568458781 5.7978289576125 5.32784783627 5.52405037577447 0.200850508700414 0.19764467328021 0.198609739723022 0.200367056528701 0.208955651338969 0.206687958892672 0.198065603546117 0.195506534331125 0.222337114780810 0.194730167377494 0.201509766951101 0.198264740070505 0.207468017111505 0.202440021647419 0.197978676238650 0.194730167377494 0.206782052580853 0.202258924282778 0.199175524954766 1 1|0 -|/ 5075482 5076032 5075789.9 5075208 5077786 - gene protein_coding_gene FALSE TRUE AT1G14740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63500.2); similar to Potyvirus VPg interacting protein [Nicotiana benthamiana] (GB:AAP22954.1); similar to Os03g0239200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049504.1); similar to Os03g0218300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049395.1); contains InterPro domain Arabidopsis thaliana 130.7kDa hypothetical protein; (InterPro:IPR004082) 0.396586680703989 4.8093519988051 0.00116793754954773 1 6.24658962515735 12.0287872206383 0.396586680703989 0.0683009668470191
AT2G36960_at 4.86148939613368 5.29679816154185 4.99390445143278 5.28720053327108 6.00543301764445 6.15669369012035 4.7347707518051 4.80567177958775 4.23041367786475 4.40867017312517 4.70481106453778 4.62884794650402 4.52380266951392 4.62011009966194 4.37141016553741 4.86900266859895 4.79706253294805 4.63505179990850 4.62787534213351 0.254345987196468 0.256198820744473 0.261961467058695 0.256490796497764 0.261225065939631 0.257174552892615 0.254398819351925 0.256113842033719 0.272583287606526 0.258883192025132 0.254345987196468 0.257748805118657 0.25671075195512 0.255494821720817 0.261639657436597 0.265686370306600 0.268737564500465 0.257782696281852 0.258592036392553 2 2 + 15533609 15534274 15533905.818 15529999 15534556 + gene protein_coding_gene FALSE TRUE AT2G36960.1|AT2G36960.2 TKI1 (TSL-KINASE INTERACTING PROTEIN 1); DNA binding / transcription factor Arabidopsis thaliana myb/SANT domain protein Identical to TSL-kinase interacting protein 1 (Myb-related protein TKI1) (TKI1) [Arabidopsis Thaliana] (GB:Q8LJT8;GB:Q3EBL6;GB:Q8VZJ8;GB:Q9SJL1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39380.1); similar to Os03g0241100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049513.1); similar to ribosomal protein S14p/S29e containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99104.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68898.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to TSL-kinase interacting protein 1 (Myb-related protein TKI1) (TKI1) [Arabidopsis Thaliana] (GB:Q8LJT8;GB:Q3EBL6;GB:Q8VZJ8;GB:Q9SJL1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39380.1); similar to Os03g0241100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049513.1); similar to ribosomal protein S14p/S29e containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99104.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68898.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.453784019105126 4.80854862469944 0.00116918037904491 1 6.24566687481502 9.80078627241336 0.453784019105126 0.095325172461869
AT2G41740_at 7.44388107508283 7.63375317374939 7.68260032693553 7.79226013170471 7.95720889139004 7.78047136189665 7.82724265651188 7.783083134749 7.949197280014 7.83692675713796 9.12169851400074 8.41657529929243 8.6707790705491 8.45879426932557 8.35060699231021 8.40509803469593 7.98449970452942 8.53243538042087 7.89995585402078 0.155659704202796 0.155069055370467 0.157797383796746 0.154817789037517 0.159173899483179 0.163411047347738 0.151883129715887 0.153991327251571 0.176519531008405 0.160461760924989 0.152503033049114 0.151795415695057 0.158625193028846 0.162372257473040 0.155449124845382 0.154317603342781 0.160865369118044 0.170993312805321 0.156850984069336 2 2|0 -|/ 17418081 17418760 17418511.7 17417793 17424818 - gene protein_coding_gene FALSE TRUE AT2G41740.1 VLN2 (VILLIN 2); actin binding Encodes a protein with high homology to animal villin. Identical to Villin-2 (VLN2) [Arabidopsis Thaliana] (GB:O81644;GB:O22946;GB:Q8RXZ3); similar to villin, putative [Arabidopsis thaliana] (TAIR:AT5G57320.1); similar to VLN3 (VILLIN 3), actin binding [Arabidopsis thaliana] (TAIR:AT3G57410.1); similar to VLN4 (ARABIDOPSIS THALIANA VILLIN 4), actin binding [Arabidopsis thaliana] (TAIR:AT4G30160.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96040.1); similar to actin bundling protein ABP135 [Lilium lon (GB:AAD54660.1); similar to Villin-3, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96039.1); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Villin headpiece; (InterPro:IPR003128) 0.364173056187374 4.80790179776998 0.00117018206903173 1 6.24492384853305 15.9315230299349 0.364173056187374 0.0493320857748849
AT2G44730_at 5.74020609681605 5.92892818614598 5.50648185585456 5.44936323898349 6.18161287241756 6.32352901466886 5.19498719916328 5.16966852039708 5.88226903250054 5.2693225607108 5.9179453157715 6.09162684453163 5.87821921681629 5.99099565201664 5.8852857532016 5.9873327787531 5.56071339034749 5.60489740539526 5.38886056302369 0.170691740118145 0.164018968636846 0.171341962860437 0.169070509926722 0.169757886665062 0.170725646885255 0.169194771902934 0.167770233465895 0.174214816518491 0.173463969894139 0.163607140356249 0.160974224960234 0.176483223244076 0.163267537454308 0.180878308999816 0.163117075672761 0.162709694415397 0.161098306392067 0.172878500773958 2 2 - 18444702 18445078 18444915.818 18444408 18445640 - gene protein_coding_gene FALSE TRUE AT2G44730.1 transcription factor similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G24860.1); similar to Os08g0484700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062084.1); similar to Os10g0564200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065409.1); similar to Myb, DNA-binding [Medicago truncatula] (GB:ABE94443.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain MADF; (InterPro:IPR006578); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.353971118688182 4.8039873541371 0.00117626392671691 1 6.24042561078568 11.3759026713971 0.353971118688182 0.0422692137242042
AT3G18035_at 8.82443112101225 8.76925095515588 8.80428994633835 8.85706847894535 9.25472994733095 9.09906207265928 8.14693405151716 8.29343020330125 8.66447069328172 8.63356549983485 8.78772236892236 8.85471834806182 8.84068242768382 8.92043159246467 8.73239851509209 9.10687636333354 8.54870450780728 8.86002103116985 8.58126213211106 0.127793918115943 0.125778304421955 0.127573098994302 0.129128961087420 0.126399847340476 0.136544677204627 0.131350288880016 0.125962429363307 0.136948670011766 0.132313624164819 0.131801654124432 0.128747259476670 0.131651304619211 0.126340382377376 0.123309956334533 0.127557106021711 0.129691622474405 0.135176428602336 0.137071557730974 3 3 - 6169416 6170598 6170160.273 6169096 6171730 - gene protein_coding_gene FALSE TRUE AT3G18035.1 HON4; DNA binding A linker histone like protein similar to histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G48620.1); similar to HMG I/Y like protein [Glycine max] (GB:CAC69997.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.350143823906454 4.80365438316042 0.00117678284014728 1 6.24004285283522 17.4850881817290 0.350143823906454 0.0392815156731573
AT2G13100_at 7.81568286743307 8.01529264622393 8.13929983918682 7.88582546410516 8.78570199254321 8.13940241765015 7.26864586366732 7.57049509746872 7.10883493004749 6.90510817297311 7.50366240129814 7.47823317872065 7.87663388468789 7.54593277724572 7.12081265362389 7.46047857885777 7.81795970311671 7.74785473048737 7.0770415987356 0.208941268273304 0.205191287899631 0.205811015608718 0.209828399450892 0.210483920373453 0.217564682553315 0.203864614179126 0.199991486714264 0.221298336615272 0.208937760099176 0.200629755408828 0.212159924899859 0.201879062840404 0.204576979146901 0.199226698720780 0.200857499438649 0.238304908520188 0.206026924118779 0.207461633762554 2 2 + 5398128 5398771 5398458.909 5397288 5399011 + gene protein_coding_gene FALSE TRUE AT2G13100.1 glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative similar to glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative [Arabidopsis thaliana] (TAIR:AT3G47420.1); similar to putative Glycerol-3-phosphate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC99502.1); similar to Os04g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053515.1); similar to Os06g0179900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056973.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.554323032129557 4.80303479852674 0.00117774908213689 1 6.23933057226322 15.2521803847466 0.554323032129557 0.135481955721704
AT4G20880_at 4.12318497261175 4.8148161828734 5.8780995427442 5.76928278833229 5.67076369118312 5.5353405413327 4.75311543804966 5.17654177269122 5.70746862412086 6.19273392472653 6.76060568057458 6.65469089627723 6.17114862168159 6.32517578892797 5.06013494999398 6.14732778348577 6.07406603341575 5.90869165395828 6.04669439378675 0.254433157472683 0.242341307151837 0.241363544667946 0.243615336398098 0.247704917555261 0.260335802844153 0.250844890376766 0.253187771302146 0.256586494853196 0.268722531323727 0.245904085463049 0.241363544667946 0.246587997981534 0.245941802007024 0.25028638881 0.241604920575391 0.259343186645123 0.259032797486720 0.249366689880498 4 4 - 11179407 11179972 11179643.273 11179126 11180810 - gene protein_coding_gene FALSE TRUE AT4G20880.1 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) similar to ethylene-responsive nuclear protein -related [Arabidopsis thaliana] (TAIR:AT5G44350.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE90052.1) 0.57594412225146 4.80151122365379 0.00118012875250599 1 6.23757875966151 11.2751576946860 0.57594412225146 0.143523165554212
AT1G19150_at 10.6051005572112 10.7420941037286 9.91892939443909 9.93391383323967 10.4404211034253 10.3767574709334 11.71870975368 11.8303360883875 11.6988087473724 11.7070079730227 11.9259867943224 12.1454033045216 11.7053472617572 11.9571028473938 12.3919277063640 12.0495172721640 11.7829789820613 11.9650850470053 11.4497671776811 0.0781911787762228 0.0757300769963208 0.0792916496915723 0.0779531456953226 0.0770076991798424 0.0789406025050805 0.0770549383871298 0.0803274034649326 0.0808111130456623 0.0757300769963208 0.0765875570891809 0.0757300769963208 0.0757300769963208 0.0767430062941043 0.0762520489496791 0.0757300769963208 0.0829458672852699 0.0772277685897238 0.0790595447818089 1 1|0 +|/ 6613044 6613641 6613300.333 6612740 6613963 + gene protein_coding_gene FALSE TRUE AT1G19150.1 LHCA6 (Photosystem I light harvesting complex gene 6); chlorophyll binding PSI type II chlorophyll a/b-binding protein (Lhca2*1) mRNA, similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to PSI type II chlorophyll a/b-binding protein (GB:AAA57542.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.342331994659587 -4.80083459710347 0.00118118724421572 1 6.23680063674668 22.5002560971176 -0.342331994659587 0.0326084134003284
AT4G02010_at 5.58004794004281 5.41490080789124 4.96952049179335 4.55686514365404 4.9587038438635 5.25550752331882 6.44129890300584 5.98816944517313 5.26074007963558 5.73779558211753 5.71755797966763 5.73216346138951 5.46049861803998 5.4560290639598 5.33457626152870 5.44710754251178 5.09151809117226 5.28700665793634 5.66075329034141 0.180966111154752 0.183065426431859 0.183052077827332 0.185469523424341 0.186361665296414 0.181098137253626 0.185214949921115 0.187151780989118 0.202017836114694 0.189865516204645 0.179487840313141 0.183408262139506 0.180560842885589 0.184729407078949 0.183590749641619 0.182722471896934 0.181851581050801 0.194002190627296 0.200126279324125 4 4 + 884442 885136 884832 881183 885399 + gene protein_coding_gene FALSE TRUE AT4G02010.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56890.1); similar to Os01g0253100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042609.1); similar to CMV 1a interacting protein 2 [Nicotiana tabacum] (GB:ABB36644.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.516622065604959 -4.80071661166918 0.00118137192188810 1 6.23666494458337 10.8925785257881 -0.516622065604959 0.121258940015651
AT1G50920_at 8.30166457896204 8.50625491162577 8.05831505427255 7.92672878014519 8.00235704287373 8.04375688175308 8.07368784278321 8.46094482521631 7.37655509253852 7.833775020478 7.21522821293243 7.44349114208662 7.1900382455406 6.68918132737036 7.75385445986537 7.14129359216846 7.08241140016012 7.01903635502039 7.88898406372131 0.199361165075814 0.195542818058636 0.196254561472151 0.195763114644882 0.195283954515352 0.204703072519309 0.197554393652472 0.192747032874465 0.200611199820150 0.196500576404366 0.206903221831892 0.199247362604911 0.195554068126143 0.199266670910469 0.195903816842140 0.202521896060766 0.202671898917981 0.2037422647597 0.202113980387825 1 1 + 18875750 18876165 18875946.455 18873807 18876598 + gene protein_coding_gene FALSE TRUE AT1G50920.1 GTP-binding protein-related Identical to Probable nucleolar GTP-binding protein 1 [Arabidopsis Thaliana] (GB:Q9C6I8); similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G10300.1); similar to GTP-binding protein CRFG/NOG1 (ODN superfamily) (ISS) [Ostreococcus tauri] (GB:CAL52519.1); similar to putative GTP binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06946.1); similar to putative nucleolar GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35220.1); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Nucleolar GTP-binding 1; (InterPro:IPR010674); contains InterPro domain NOG, C-terminal; (InterPro:IPR012973) -0.417901575119294 -4.7982356157655 0.00118526257182592 1 6.23381102733831 15.6175078567735 -0.417901575119294 0.0794647096708028
AT1G78070_at 8.7510569177053 8.5730041721137 9.14640235048235 9.02621973423873 9.60556240805556 9.2673060811394 9.9291525109165 9.33909565649155 7.51025390972803 8.07938528590635 8.8179375256396 8.3712663482845 8.88532394882054 8.6509085583884 8.57168466639688 8.81397802425936 8.94418622388978 8.74451483432955 7.79376793600083 0.126102355094223 0.116338135886520 0.119337385284175 0.121868330420814 0.120666828438092 0.121548942138842 0.121153033702685 0.130399765537354 0.142148898130099 0.119660697634060 0.118308932513673 0.123302298214299 0.122204798593504 0.120544564805526 0.116755932538913 0.121361692510477 0.125743305117687 0.131859241803883 0.134550174626096 1 1|0 +|/ 29360218 29362398 29361658.6 29359925 29363883 + gene protein_coding_gene FALSE TRUE AT1G78070.1|AT1G78070.2 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G36070.1); similar to WD domain, G-beta repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85309.1)|similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G36070.1); similar to WD domain, G-beta repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85309.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.521900650772461 4.79760091574046 0.00118626012352501 1 6.23308074555884 17.4644470089576 0.521900650772461 0.123431907779908
AT4G19390_at 7.08779935004373 7.69188135542096 6.81753072528885 7.05877684163509 7.3465390069787 6.7524971380558 3.61253289890831 4.62045482620160 3.84149671357224 3.802132208572 3.76719944853226 4.42179130794503 4.2205375920557 4.65596929610722 3.53878282765816 4.22357078391973 3.68684081314157 3.89768182920555 3.23833147413964 0.241308377731214 0.243426911785031 0.253978339745804 0.247133892192960 0.246933047299072 0.252894385007611 0.243571627591439 0.246304559100107 0.246140317273564 0.249261127246142 0.241720649363022 0.241288418272546 0.245680147077344 0.240362907641852 0.245479486031455 0.240362907641852 0.283469363351943 0.250086759119596 0.251387382276856 4 4|0 -|/ 10574918 10576100 10575327.2 10574779 10576439 - gene protein_coding_gene FALSE TRUE AT4G19390.1 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G13720.1); similar to Os07g0656700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060506.1); similar to Os06g0710300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058543.1); similar to Uncharacterized protein UPF0114 [Thiomicrospira denitrificans ATCC 33889] (GB:YP_393149.1); contains InterPro domain Uncharacterized protein UPF0114; (InterPro:IPR005134) 0.832447712785995 4.7953793717232 0.00118975886849231 1 6.23052407603722 10.2129349525243 0.832447712785995 0.231654667225498
AT3G45600_at 9.92549095928042 10.1105496157636 9.97124482433257 9.92729143711917 10.5601155575091 10.2961628751778 10.2906907114006 10.1363030019734 8.01069557941641 9.5139952273781 9.65529575998117 9.44121545421893 9.99798628661305 9.81950487112428 9.13336408004466 9.7631032442855 9.94986111519465 9.35379589507052 9.30545978157905 0.122832723293320 0.122225198067436 0.117577376096404 0.117577376096404 0.128091633404799 0.123200754082737 0.125180972778519 0.122779930517756 0.129527479775390 0.122080104535823 0.123608883750315 0.118447675134209 0.121569464675320 0.126504296633798 0.126945325856265 0.121435368740741 0.129003926484352 0.122074810051015 0.124942708022678 3 3|0 -|/ 16744958 16746550 16745579.556 16744740 16746936 - gene protein_coding_gene FALSE TRUE AT3G45600.1 TET3 (TETRASPANIN3) Member of TETRASPANIN family similar to TET4 (TETRASPANIN4) [Arabidopsis thaliana] (TAIR:AT5G60220.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE85915.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.384413705144451 4.79474423712156 0.00119076120489269 1 6.22979296530171 19.4435558067068 0.384413705144451 0.0623201513203726
AT1G72440_at 5.96865507825042 6.01922555216042 5.78382418506033 5.61181298816559 4.91671549501357 5.87554614513749 6.40389015280689 6.63059529955576 6.36473244556259 6.91640785479737 6.24753035091675 6.64041434855884 6.15301164771516 6.27395464009575 6.82468514864117 6.63529496004615 6.00949389357207 5.72258341534637 7.48485038002545 0.218806724033055 0.217912072722087 0.220557586679373 0.228642631255483 0.222504649188988 0.228668250579251 0.217992453446435 0.218358339404754 0.220576699483890 0.220445790970509 0.227216115166139 0.214749996770447 0.221398356846869 0.225164106120789 0.222644562582210 0.219823434005901 0.226335068467472 0.229082734021857 0.225217147261408 1 1 - 27272024 27272562 27272314.636 27271827 27277258 - gene protein_coding_gene FALSE TRUE AT1G72440.1 EDA25 (embryo sac development arrest 25) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17160.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein (ISS) [Ostreococcus tauri] (GB:CAL56761.1); similar to Os09g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062588.1); contains InterPro domain CBF; (InterPro:IPR005612) -0.658621330099695 -4.79307775833035 0.00119339550477442 1 6.22787431470295 12.5189670840555 -0.658621330099695 0.173305123163745
AT4G17370_at 8.32491534877487 8.06045647106749 8.67775183129804 8.69420941483932 8.98943837262078 8.8322630840082 8.34226653941455 8.19751600405927 7.41064240348048 7.95537146666144 7.89094662459973 7.58236843515819 7.81810450970563 7.77274177478509 7.76075054317724 7.95718471131587 8.53814110369378 7.87903576527206 7.76572642111398 0.177246450503560 0.178861521772323 0.178219259023055 0.187068734135587 0.180890675651501 0.192091427091782 0.179394663921203 0.180601525972691 0.18587167393536 0.182233954343757 0.185922009705595 0.178405156848277 0.191427016390412 0.188260802544843 0.183881507876698 0.182541925757533 0.193001878701264 0.180418639786228 0.181599855936659 4 4 + 9706965 9708121 9707622.909 9706070 9708273 + gene protein_coding_gene FALSE TRUE AT4G17370.1 oxidoreductase family protein similar to oxidoreductase family protein [Brassica oleracea] (GB:ABD65136.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) 0.378228085620343 4.79162353141106 0.00119569944218979 1 6.22619962253606 16.3200967735347 0.378228085620343 0.0589062770167724
AT3G03710_at 7.70223954015943 7.61269569400152 6.98441221039527 7.11614704320873 7.15556434852962 7.10001308218282 8.17291365738117 7.74574690705238 6.67332805971219 6.85799911646626 6.21464427332078 7.28061169394722 7.01294436039855 6.5894290723468 7.16374183162946 7.13161975942491 6.66417819451061 6.14679372752533 7.14063252517723 0.177430751746724 0.180674282226376 0.178882318926194 0.180824760253854 0.181282302428206 0.183997100311775 0.177580547273058 0.181112948599897 0.185092425885581 0.178751230406799 0.189542266744619 0.177323668738282 0.193434861109259 0.183514999644728 0.185794264220027 0.178138203673374 0.188388472005792 0.189762206936044 0.185721139283091 3 3 + 924138 924764 924445.545 919549 925345 + gene protein_coding_gene FALSE TRUE AT3G03710.1 RIF10 (RESISTANT TO INHIBITION WITH FSM 10); 3'-5'-exoribonuclease/ RNA binding / nucleic acid binding Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings. similar to polyribonucleotide nucleotidyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G14580.1); similar to polynucleotide phosphorylase [Pisum sativum] (GB:AAC50039.1); similar to polyribonucleotide phophorylase (GB:AAC49669.1); similar to 100RNP protein (GB:2208281A); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Exoribonuclease; (InterPro:IPR001247); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.417261324108393 -4.79054453529398 0.00119741201231362 1 6.22495679950638 14.2817908593255 -0.417261324108393 0.0794789302680047
AT3G04920_at 9.31266283806493 9.08546567276443 8.42868772644284 8.42270233550869 9.28594444037616 8.54805233159844 9.81492161626464 9.84377368457781 9.21657942071698 9.30146117686738 9.1521502258669 9.48393370583546 8.87732175919002 8.78400153777697 9.62517011851157 8.5715865792166 8.3150474028591 8.75046271482689 9.07698730289772 0.141733836693242 0.144309034518461 0.148999748478972 0.150085326066343 0.141767129360633 0.149933229995443 0.152648571731805 0.142881382819082 0.143820360814691 0.150095630126529 0.146924153499218 0.147438200711122 0.141733836693242 0.146167299414363 0.144786855234749 0.149358982749643 0.149730929635526 0.147713147578557 0.148325410168498 3 3 + 1360997 1361644 1361377.909 1360888 1362301 + gene protein_coding_gene FALSE TRUE AT3G04920.1 40S ribosomal protein S24 (RPS24A) Identical to 40S ribosomal protein S24-1 (RPS24A) [Arabidopsis Thaliana] (GB:Q9SS17); similar to 40S ribosomal protein S24 (RPS24B) [Arabidopsis thaliana] (TAIR:AT5G28060.1); similar to ribosomal protein S19 (GB:1909359A); contains InterPro domain Ribosomal protein S24e; (InterPro:IPR001976) -0.548121311210002 -4.79034977829078 0.00119772141123441 1 6.22473244952789 18.1644272752020 -0.548121311210002 0.133708844943359
AT3G15070_at 7.45829235401344 7.40423874659122 7.56374632997405 7.64835960732379 8.14922942277403 8.06040548819867 7.2003029436622 7.0584289714286 7.24337860224936 6.52479917711868 6.9033185380899 6.0425662503183 7.2727029599252 7.31080030670614 6.94941949841216 7.02611180050894 7.33420221170765 6.90169989357787 6.80361281854149 0.164776445924551 0.164383293698045 0.172690367722577 0.170271585315244 0.164567144920371 0.168662238786744 0.164953294139171 0.164425294538152 0.165041675072168 0.168426881648893 0.171957460758089 0.164466020313733 0.168597091050674 0.166892487622987 0.175810075207009 0.16548401254239 0.167452964661444 0.174623914088829 0.171327165881863 3 3 - 5070596 5071366 5071054.727 5070141 5073324 - gene protein_coding_gene FALSE TRUE AT3G15070.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G53190.2); similar to Os01g0667700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043810.1); similar to RING-finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73651.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.342729303956514 4.78901647952936 0.00119984187022827 1 6.22319637371626 14.4803085905169 0.342729303956514 0.033778530267295
AT1G80920_at 12.4090280088030 12.6295116611411 12.9518907775787 12.9319031753320 13.2687917171944 12.9665198184392 12.3153352160363 12.322995702617 12.2369873101589 12.6142552174346 12.7363087834337 12.1896646249143 12.5814619429198 12.7288593508291 11.8244155620352 12.9520169370861 12.9279661734750 12.7933352584748 12.4252925729737 0.085478766644465 0.083359657493964 0.0863691354623311 0.083080416710416 0.0841073205559229 0.0878935126170251 0.0872699106628525 0.0846852187705995 0.0965903851204848 0.0835561110361881 0.0859545905384894 0.0856117350788925 0.0836741350382803 0.0901157542824076 0.087743813043094 0.0837699666227692 0.0935547972679046 0.0907280348379054 0.0835309924722351 1 1 - 30408756 30409415 30409114.364 30408536 30409578 - gene protein_coding_gene FALSE TRUE AT1G80920.1 J8; heat shock protein binding / unfolded protein binding J8 mRNA, nuclear gene encoding plastid protein, complete Identical to Chaperone protein dnaJ 8, chloroplast precursor (AtJ8) (AtDjC8) (ATJ8) [Arabidopsis Thaliana] (GB:Q9SAG8;GB:Q9ZSN1); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72070.1); similar to putative DnaJ protein [Camellia sinensis] (GB:ABC69274.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.388400301971823 4.78768397725336 0.00120196512421108 1 6.22166089347664 25.2331296493102 0.388400301971823 0.0648526893190045
AT3G24740_at 7.14110067514558 7.09238600702915 7.79453064414907 7.4448187819279 8.06451990610054 7.76124339079303 7.043462686057 6.75099414335645 6.7381269163742 6.90796051644696 6.75993241956096 6.81725066479651 7.16045097901519 7.10317664188896 6.61149045752688 7.48175927752777 7.61450820415585 6.80538841451042 7.05640996843755 0.177144487084430 0.173047208534210 0.171319728048313 0.179218940418948 0.175658305632978 0.173175487357544 0.170983479810779 0.17983604573891 0.200884417598989 0.170806895917668 0.179276838283018 0.184850921067551 0.175956118855085 0.18436298990842 0.1943482923083 0.171578495382754 0.181689318995806 0.175851431562818 0.173825900303638 3 3 + 9032892 9033382 9033100.545 9031104 9033847 + gene protein_coding_gene FALSE TRUE AT3G24740.1|AT3G24740.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G25910.1); similar to Pm27 [Prunus mume] (GB:BAE48661.1); similar to OSIGBa0131J24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65926.1); similar to OSJNBa0027H09.16 [Oryza sativa (japonica cultivar-group)] (GB:CAE03816.2); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.451352234066086 4.7875247107267 0.00120221917691695 1 6.22147734459143 14.3591705790494 0.451352234066086 0.0951306528209105
AT2G24550_at 9.4665281776004 9.75182706562507 9.42302859435997 9.40623946863367 9.7904728742384 9.50124074413655 9.51693323925565 9.81188269670606 9.40981999699664 9.34074931432513 8.746549424202 8.16961370970831 8.71833691799289 8.81558129098932 7.8038023437661 8.90349539620809 8.83830196009524 8.87401339134676 9.35341538928622 0.145308390134943 0.140349443642329 0.151488233535397 0.148548537359041 0.142802208548645 0.149268203228485 0.148870500644289 0.140121685653400 0.154816811050618 0.140867097174891 0.143416942367200 0.148824573504207 0.143116168863745 0.145782598244480 0.160285762333384 0.14244672209765 0.153108925292293 0.144867067824797 0.142951615511988 2 2 - 10435334 10436075 10435835 10434936 10436301 - gene protein_coding_gene FALSE TRUE AT2G24550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31510.1); similar to putative KID-containing protein [Brassica napus] (GB:AAO53442.1) -0.432915235184363 -4.78746299866396 0.00120231763204043 1 6.22140622244498 18.5718724598151 -0.432915235184363 0.0869292244521535
AT3G22260_at 5.54922102755362 5.38977627297125 5.83400660200428 5.88897599037802 6.48859101024805 6.04533751158592 5.07887605538156 4.03418478259862 4.21440756519149 4.42624462405739 4.6326701330022 4.54428489206507 4.54260932641373 4.6692399715576 3.98391429833562 4.45291426137911 4.49267318980295 4.20488106270321 3.44801431378108 0.289120448825103 0.29169958599072 0.288840325657350 0.28685890292801 0.290027429709224 0.294986798568107 0.285832367463896 0.286645815037729 0.300659246417264 0.301652306421602 0.293984023967481 0.285832367463896 0.287492326844497 0.296902163074278 0.296801603817514 0.285832367463896 0.288350823446143 0.292797699548029 0.298664192128795 3 0|3 /|+ 7872217 7873214 7872939.333 7870899 7873573 + gene protein_coding_gene FALSE TRUE AT3G22260.1|AT3G22260.2 OTU-like cysteine protease family protein similar to OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT3G02070.1); similar to Os02g0168600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046015.1); similar to OTU-like cysteine protease-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22968.1); similar to Os06g0669800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058325.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.731028067412628 4.78383496539989 0.00120812114978035 1 6.21722375955637 9.77359810304887 0.731028067412628 0.198545652965807
AT3G22120_at 10.1059264629567 10.7875923211742 5.48861230760837 6.52022846569437 9.03514307192257 9.36371116424464 7.26325326858967 8.4623023228599 10.5941324857245 10.4999538839843 10.4769239163527 11.3473876663791 9.56559616760994 10.1758742168169 10.4514543013308 9.76929815836453 7.68312315854553 10.1924925789417 10.4347890692473 0.170477520570883 0.169566525740176 0.233180951085372 0.215713501610738 0.167497258388633 0.165089916185466 0.191934960858316 0.169891695448272 0.180400682771721 0.170093431097212 0.165470936352525 0.16561038172767 0.171087772957508 0.171473899839512 0.165133643595603 0.167405766351238 0.226074642886207 0.164845977235681 0.169770629570966 3 3 - 7795290 7795545 7795419 7794964 7796317 - gene protein_coding_gene FALSE TRUE AT3G22120.1 CWLP (CELL WALL-PLASMA MEMBRANE LINKER PROTEIN); lipid binding cell wall-plasma membrane linker protein homolog (CWLP) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22142.1); similar to cell wall-plasma membrane linker protein [Brassica napus] (GB:CAA64425.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -1.05235060865185 -4.78200748681567 0.00121105592311335 1 6.2151161049978 18.6120431315620 -1.05235060865185 0.303442155627704
AT1G62750_at 11.8761082557297 11.8454735086300 11.9100142408301 11.8106497434815 11.7295592504826 11.6224369203056 12.7990980179017 12.8450590494847 12.3569139144855 12.6496030732200 12.3444249059844 12.4342101491576 12.3661997161186 12.3608458702682 12.4523782492001 12.5804120336355 12.2910871598140 12.2626389608756 12.4461930210659 0.073531609003872 0.0726544609831373 0.0729250328299678 0.0750550713936308 0.072542986666674 0.073197704025562 0.074536276999513 0.0721040072878042 0.0761738358464981 0.0722690728976964 0.0719579192939111 0.0719579192939111 0.0721824223837135 0.0748176609211408 0.0738926514822725 0.0720154516864423 0.0767128466943789 0.0743916691255522 0.0738834185015176 1 1|0 -|/ 23237302 23237920 23237628.7 23237099 23240112 - gene protein_coding_gene FALSE TRUE AT1G62750.1 ATSCO1/ATSCO1/CPEF-G (SNOWY COTYLEDON1); translation elongation factor/ translation factor, nucleic acid binding Nuclear encoded protein consists of the five domains conserved in EF-G proteins, with two GTP-binding sites in the first domain, and an additional transit peptide at the N-terminus. Localized in chloroplasts. Point mutation results in a delay in the onset of germination. At early developmental stage embryos still contain undifferentiated proplastids. The greening of cotyledons is severely impaired in light-grown mutant sco1 seedlings, whereas the following true leaves develop normally as in wild-type plants. similar to mitochondrial elongation factor, putative [Arabidopsis thaliana] (TAIR:AT2G45030.1); similar to Elongation factor G, chloroplast precursor (EF-G) (GB:P34811); similar to translation elongation factor EF-G, chloroplast - soybean (GB:S35701); similar to Elongation factor Tu, domain 2 [Medicago truncatula] (GB:ABE81469.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation elongation factor G; (InterPro:IPR004540); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, domain IV; (InterPro:IPR005517); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.335490854060137 -4.77993472666610 0.00121439394248396 1 6.21272483106361 24.4901805234669 -0.335490854060137 0.0270316708909551
AT4G24400_at 8.36397522804792 8.5237943829071 9.10148995649233 8.85580657364932 9.22178145571272 8.5167326865905 7.97913419296823 7.97549220051204 7.57675662401209 7.35340692278627 7.91609206817955 7.8681731289102 7.81806180021419 7.90090639297727 7.23050059034896 7.62257564565731 7.93761103146876 8.07344008369366 7.34157937752469 0.195220952462014 0.20068920713311 0.212448914152282 0.208879539884039 0.212060418449899 0.197440945907584 0.202053904752028 0.204492454825363 0.208116566870238 0.204257210151165 0.196975260217077 0.19257025337752 0.205968932795631 0.197361537712113 0.211712158438121 0.196702828798236 0.221384753145338 0.203853461448258 0.204377154704662 4 4|0 +|/ 12619339 12620452 12619878.1 12617266 12620694 + gene protein_coding_gene FALSE TRUE AT4G24400.1|AT4G24400.2 CIPK8 (CBL-INTERACTING PROTEIN KINASE 8); kinase|CIPK8 (CBL-INTERACTING PROTEIN KINASE 8) Encodes a CBL (calcineurin B-like calcium sensor proteins) -interacting serine/threonine protein kinase. similar to SOS2 (SALT OVERLY SENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G35410.1); similar to Os01g0536000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043259.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95890.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95976.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to SOS2 (SALT OVERLY SENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G35410.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95890.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.542679725787977 4.77927722597168 0.00121545487626256 1 6.21196613177615 16.1771930350045 0.542679725787977 0.132135992278387
AT2G36480_at 6.0104761798722 6.27090277654949 5.59670749783918 5.69860149821584 5.48042368191308 5.64254712714704 6.01052571012749 6.22779865927944 5.99995891114074 5.95889324682302 6.10417581619244 5.9885335781532 5.66386641844325 6.17400170698959 5.27730469587711 5.69420209255442 5.6549319072128 5.74706340570674 6.1834548826122 0.206348636209814 0.205878466450275 0.204430065841289 0.202567008529597 0.206444309775082 0.209691856488982 0.202567008529597 0.20933904380431 0.216159938498304 0.205802119211513 0.205863286120069 0.202567008529597 0.205001520369695 0.212979118864794 0.205976444754852 0.202567008529597 0.219133173970517 0.204188956995499 0.207839444415377 2 2 - 15310369 15310880 15310569.818 15309883 15313353 - gene protein_coding_gene FALSE TRUE AT2G36480.1 zinc finger (C2H2-type) family protein similar to pre-mRNA cleavage complex-related [Arabidopsis thaliana] (TAIR:AT4G04885.1); similar to putative pre-mRNA cleavage complex II protein Pcf11 [Oryza sativa (japonica cultivar-group)] (GB:BAD46662.1); similar to Os09g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063953.1); contains InterPro domain ENTH/VHS; (InterPro:IPR008942); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.392390803864581 -4.77893677683857 0.00121600461441504 1 6.21157325193338 11.7849707077846 -0.392390803864581 0.0674016137375599
AT3G09030_at 5.87670075417036 5.8369202025076 5.92826919600494 6.32684120559274 6.39772847103528 6.89854534024635 4.81457389813349 5.35279626361908 4.7819055203044 4.20039394383154 4.62600644340253 4.62057000815224 4.80718580079381 4.86029819014246 4.36191232539078 4.95635326328326 5.08744505484956 4.57616009554987 4.5207463300733 0.219030528756771 0.219841847154627 0.232350791868489 0.219030528756771 0.222080610050181 0.230830873534385 0.219030528756771 0.227968664313879 0.234386248782487 0.219030528756771 0.221366818826728 0.219030528756771 0.22495136015965 0.221663445904749 0.219030528756771 0.219030528756771 0.225412873207404 0.220132517588211 0.219030528756771 3 3 + 2755643 2756193 2755867.636 2754787 2756512 + gene protein_coding_gene FALSE TRUE AT3G09030.1 potassium channel tetramerisation domain-containing protein similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G41330.1); similar to BTB/POZ [Medicago truncatula] (GB:ABD28655.1); contains InterPro domain K+ channel tetramerisation; (InterPro:IPR003131); contains InterPro domain BTB; (InterPro:IPR000210) 0.576787203285674 4.77757625402214 0.00121820419909749 1 6.21000299260242 10.5480502476297 0.576787203285674 0.144885410797532
AT3G06110_at 7.88313506786005 7.5933284989606 8.31917071872426 7.94540901012403 8.64277826140217 8.2291943431736 7.70310596547864 7.14091260392048 6.68291144712125 7.07247735236532 7.463674806734 7.35448693814673 7.50144357463038 7.4253689521354 7.37946868375561 7.61624999116679 7.32251503648454 7.19529430612489 7.10142112458144 0.168169628024131 0.158559527793918 0.167306836461552 0.163524276631511 0.172589491309112 0.1658032195906 0.156669627502196 0.158588371942951 0.174600967199713 0.168628773479429 0.158810073932403 0.160878675855602 0.165605649749722 0.161906599194536 0.161965959272926 0.154541787326571 0.161030746108269 0.169021866331748 0.165071522055529 3 3 + 1843528 1844510 1843992.455 1843478 1844782 + gene protein_coding_gene FALSE TRUE AT3G06110.1|AT3G06110.2 dual specificity protein phosphatase family protein similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.1); similar to Os01g0390900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043112.1); similar to dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum] (GB:BAE44441.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.579530180379513 4.77731559356609 0.00121862610558635 1 6.20970211073665 15.1119206891238 0.579530180379513 0.145900445840054
AT1G67590_at 4.94929235256016 4.31540587103189 4.56235246266098 4.70762562526597 4.55610952499468 4.76014530594425 5.77149442986721 5.70193509560162 5.49011869770906 5.74418076685879 4.66298160120497 4.79017572669422 5.53176012072142 5.59127043591431 4.9824367471508 5.33096097105536 5.76692421478824 5.08077183028425 5.8457028330738 0.194974119388227 0.187333346039634 0.201702173680091 0.189958938370166 0.198960108518844 0.189585364241818 0.198424640433218 0.189567394272735 0.194168789952677 0.19107110627636 0.201553601441391 0.188026456315327 0.187333346039634 0.187448851779192 0.194956912126791 0.189254419233001 0.187333346039634 0.187333346039634 0.195662022215274 1 1 - 25336847 25337656 25337426.909 25336721 25338310 - gene protein_coding_gene FALSE TRUE AT1G67590.1|AT1G67590.2 remorin family protein|DNA binding similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT2G02170.2); similar to Os02g0116800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045682.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO15296.1); similar to Remorin, C-terminal re (GB:ABF93690.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) -0.50707380039297 -4.77591463260111 0.00122089642049885 1 6.20808476235013 10.3707922360861 -0.50707380039297 0.118562712368904
AT4G25730_at 6.16484843931579 5.71332873762606 5.30998121958938 4.80193700783008 5.14120217304343 4.86226187909822 5.85701181858359 5.5527554956321 4.31321504645905 4.81230587780667 3.99750007966613 4.77950385836799 4.34478487678138 4.18538916528881 4.66881414213388 4.31869031927559 4.65670997463782 3.99901705131705 4.94251164274003 0.230374869067669 0.231880426523065 0.242566162433213 0.241925114872543 0.235878181116135 0.238381991476136 0.239545171523978 0.236150021653617 0.230374869067669 0.234615695501307 0.230374869067669 0.230374869067669 0.238091610079184 0.246102610910085 0.232337874506845 0.233860852016787 0.233878695216940 0.239853859903534 0.230374869067669 4 4 - 13102934 13103490 13103239.455 13102688 13106789 - gene protein_coding_gene FALSE TRUE AT4G25730.1 FtsJ-like methyltransferase family protein similar to FtsJ-like methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G01230.1); similar to FtsJ-like methyltransferase family protein [Musa acuminata] (GB:ABF69946.1); similar to Ribosomal RNA methyltransferase RrmJ/FtsJ [Medicago truncatula] (GB:ABE88988.1); similar to Ribosomal RNA methyltransferase RrmJ/FtsJ; Spb1, C-terminal [Medicago truncatula] (GB:ABE85944.1); contains InterPro domain Spb1, C-terminal; (InterPro:IPR012920); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ; (InterPro:IPR002877) -0.55684177923372 -4.7753906265861 0.00122174677008813 1 6.20747972877734 9.95448853255758 -0.55684177923372 0.137614757388498
AT1G24625_at 6.72915781068126 7.53004011869336 6.82221168275808 6.65009205757756 7.30779641737654 7.1173944814307 5.89730629883437 6.48414793981958 3.47331784997783 5.06213532552685 5.50678976959102 5.48107095782592 5.83003345574359 5.69196564666942 5.38518192698525 5.17829812815505 4.87632651616163 4.76970401896142 4.42058782336908 0.231415490115912 0.23119754564342 0.235831288132255 0.231272793820724 0.232412733149721 0.227333737263257 0.245285216434867 0.236145149015886 0.235765655250749 0.231524647092852 0.227956933955381 0.225864911895347 0.235431275267644 0.245317236203855 0.228693185401842 0.227356182273309 0.241159547923157 0.229167555174898 0.229704805402283 1 1 - 8726005 8726505 8726232.182 8725869 8727198 - gene protein_coding_gene FALSE TRUE AT1G24625.1 ZFP7 (ZINC FINGER PROTEIN 7); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 7 (ZFP7) [Arabidopsis Thaliana] (GB:Q39266;GB:O04755); similar to ZFP4 (ZINC FINGER PROTEIN 4), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G66140.1); similar to zinc finger protein (GB:AAA87300.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.667725793666161 4.77221803763705 0.00122690891468051 1 6.20381549590571 11.6465691686312 0.667725793666161 0.177469531736921
AT2G23460_at 7.2051862460128 7.19886881205694 6.49459178269451 6.73373205954345 7.31279669966848 7.0425977807159 7.24179772891097 7.23027554777625 7.47326523268306 7.43294200743108 7.12316444189074 7.13433989278796 6.97976135464259 7.06420006141922 7.04906286138478 7.45568835224924 6.52090526134706 6.92664172042418 7.51498748431717 0.189913288905721 0.182894305010225 0.193806871681511 0.194513896253068 0.188328501084472 0.202171829755009 0.192521063673336 0.189802438974511 0.20026542086297 0.198476866040617 0.191879593058028 0.184140945077637 0.185036826183413 0.184947936184666 0.188580568900898 0.182698041990229 0.206618584311353 0.199691461080053 0.18891249818927 2 0|2 /|+ 10005486 10005994 10005735.1 10002558 10006202 + gene protein_coding_gene FALSE TRUE AT2G23460.1 XLG1 (EXTRA-LARGE G-PROTEIN 1); signal transducer encodes a novel G-alpha protein that shares similarity to plant, yeast, and animal G-alpha proteins at the C-terminus. It contains an N-terminus that is as large as the C-terminus, is a member of a small family, and is expressed in all tissues examined, including roots, leaves, stems, flowers, and fruits. similar to XLG3 (extra-large GTP-binding protein 3), signal transducer [Arabidopsis thaliana] (TAIR:AT1G31930.2); similar to XLG2 (extra-large GTP-binding protein 2), signal transducer [Arabidopsis thaliana] (TAIR:AT4G34390.1); similar to G-protein alpha subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91995.1); similar to extra-large guanine nucleotide binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99166.1); similar to Os11g0206700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067461.1); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) -0.382556792287934 -4.76797172053755 0.00123385511366091 1 6.19890828674587 14.3102068662117 -0.382556792287934 0.0624840455076072
AT4G33920_at 5.80856397574227 5.18580448796652 6.66321382980816 5.63244673405897 6.7413752368362 5.55320562803629 4.87537519589221 4.52732819127289 4.3298725550953 3.50869708145231 5.14556978798975 5.01873238453649 4.96038753289047 5.20734897358799 4.61155550923552 4.72096227808305 4.91815112258923 4.62061406645758 3.79832017813567 0.193366485798666 0.197988271491187 0.205022559531044 0.198665475315451 0.206093679002382 0.205298136130048 0.209382853402661 0.208334856600519 0.202250437928594 0.193366485798666 0.198155239657104 0.196003885097980 0.215997166142308 0.204591345188218 0.197984094417225 0.195882844431000 0.193366485798666 0.193366485798666 0.195879822198867 4 4|0 +|/ 16261698 16262641 16262246.3 16260668 16262986 + gene protein_coding_gene FALSE TRUE AT4G33920.1 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G51370.1); similar to Os12g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067133.1); similar to BTH-induced protein phosphatase 2C 2 K2 form [Oryza sativa (indica cultivar-group)] (GB:AAW29521.1); similar to Os03g0761100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051350.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 1.0348721649133 4.76716783472352 0.00123517491004689 1 6.19797891690097 10.0131033991929 1.0348721649133 0.298898716919942
AT2G27600_at 10.0197288151823 9.99732015330226 10.1356995941909 10.1173771998022 10.2034251808975 10.1661143509758 9.75442300686204 9.49688343728124 9.86534930659447 9.42178480224784 10.0687295107282 10.0640554281079 9.9529310896026 9.91781934198603 10.0407635692723 10.0678178739984 9.67701766829489 10.0198708743957 9.52584403561022 0.0963963409667021 0.09323449669484 0.104136471927222 0.093966769584505 0.0930221136461944 0.0991962774924148 0.093434881140627 0.106602496604077 0.100427971507775 0.0957740423020659 0.0926323625812369 0.091694984770616 0.095187341102057 0.100404745783823 0.0966770176366595 0.0921976724933263 0.101216061956999 0.0973070256128505 0.0933026287944473 2 2|0 +|/ 11789907 11790751 11790305.857 11788115 11791069 + gene protein_coding_gene FALSE TRUE AT2G27600.1 AAA-type ATPase family protein / vacuolar sorting protein-related similar to ERH3 (ECTOPIC ROOT HAIR 3), ATP binding / nucleoside-triphosphatase/ nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G80350.1); similar to salt-induced AAA-Type ATPase [Mesembryanthemum crystallinum] (GB:AAF21428.2); similar to AAA ATPase, central re (GB:ABE93205.1); similar to suppressor of K+ transport growth defect-like protein [Gossypium hirsutum] (GB:ABD97880.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain MIT; (InterPro:IPR007330); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.355182424853523 4.76506494124159 0.00123863461210500 1 6.19554721410226 19.7765973261613 0.355182424853523 0.0453114437007922
AT4G24210_at 6.23088024180355 6.5071894780714 6.65635645629124 6.75388867342624 7.34472768191662 7.0313238818845 6.53482425611109 6.73138685200142 5.74385575953642 6.25505300644194 6.37764603582566 6.29058843362883 6.58977016112775 6.68086003017179 6.10229242033608 6.31587656118655 6.17099971104966 6.45362704336656 5.94053379595863 0.192417005821478 0.199851745918584 0.190633844889763 0.191419489090735 0.188624965692428 0.209643204777074 0.183527738383779 0.184522238597595 0.196642368534716 0.189959972867271 0.190497286274673 0.187913643055008 0.183790924055060 0.191486066512816 0.183702412939242 0.183527738383779 0.194938534011810 0.196799128761172 0.185886083287805 4 4 + 12563669 12564055 12563892.545 12563563 12564492 + gene protein_coding_gene FALSE TRUE AT4G24210.1 SLY1 (SLEEPY1) F-box protein that is involved in GA signaling Identical to F-box protein GID2 (Protein SLEEPY1) (GID2) [Arabidopsis Thaliana] (GB:Q9STX3;GB:Q8LAQ7); similar to SLY2 (SLEEPY2) [Arabidopsis thaliana] (TAIR:AT5G48170.1); similar to F-box protein GID2 (Gibberellin-insensitive dwarf protein 2) (Protein GIBBERELLIN INSENSITIVE DWARF2) (GB:Q7XAK4); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.419198664328534 4.76032781168532 0.00124646667576365 1 6.19006644665396 12.9000830586377 0.419198664328534 0.0816697238874778
AT3G13226_at 6.50454819445738 6.56789518839568 5.62249376770077 5.95750736682201 6.46553766001095 5.8183168760539 7.06924974933514 6.94299041445418 6.54174226795911 6.40149699037719 6.22866832089637 6.5873077258358 6.14302772127593 6.4913821134386 6.09454200633607 6.1455259858244 6.04570766476065 5.92989963488352 6.45049044055808 0.206124956844895 0.204038644542387 0.21277013886017 0.207098844919448 0.207107992231142 0.217791711469788 0.203566110892660 0.205435072811071 0.230623572869746 0.217470312812620 0.208134634241839 0.201529589031446 0.204412355629936 0.201529589031446 0.208657297670943 0.201529589031446 0.222268040375564 0.213872003914530 0.214481372692189 3 3 - 4264480 4265354 4264751.727 4264307 4266369 - gene protein_coding_gene FALSE TRUE AT3G13226.1 regulatory protein RecX family protein similar to OSJNBa0043A12.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE02802.1); similar to Os04g0667900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054192.1); similar to B0811B10.9 [Oryza sativa (indica cultivar-group)] (GB:CAH68308.1); contains InterPro domain Regulatory protein RecX; (InterPro:IPR003783); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.530762944327698 -4.75912063665905 0.00124847109997444 1 6.18866911771911 12.7049845086310 -0.530762944327698 0.128467082306729
AT3G58680_at 10.4991712527693 10.6797992983276 10.5769534763399 10.6520080622752 11.1367186192665 10.7718063799125 9.87717213052998 9.84035648653454 9.75772993977118 9.64326807533715 9.9234675556347 9.76985038757314 9.9827034272915 9.95010712693228 10.0958794543132 10.0026741022255 10.0313995719560 9.82735224390111 9.72796058728826 0.0926702114484917 0.090798156627619 0.0929861099851971 0.092511628377664 0.0909042978338948 0.0958421387026129 0.0914964359802009 0.0871429329286468 0.0931197549242126 0.090678158359725 0.0889850947715838 0.090505776700621 0.0898886475029278 0.0903101482377462 0.0901887431626267 0.0886560503665037 0.0902159246032619 0.0917599396477349 0.0907403310805449 3 3|0 +|/ 21718375 21719566 21718885.778 21718253 21719888 + gene protein_coding_gene FALSE TRUE AT3G58680.1 ATMBF1B/MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B); DNA binding / transcription coactivator One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated. similar to ATMBF1A/MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A), DNA binding / transcription coactivator [Arabidopsis thaliana] (TAIR:AT2G42680.1); similar to orf [Ricinus communis] (GB:CAA89698.1); contains InterPro domain Multiprotein bridging factor 1, N-terminal; (InterPro:IPR013729); contains InterPro domain Helix-turn-helix type 3; (InterPro:IPR001387); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.399261604335544 4.75768965273838 0.00125085166211975 1 6.18701238321568 20.3330392638414 0.399261604335544 0.0719324803043413
AT2G39400_at 9.5759766293785 9.6371594490056 9.47366124298532 9.39657424015618 9.93390544574709 9.77727281569152 9.27971083043733 9.18569622095423 9.15058193749002 9.22007375660168 9.482306635339 9.4556247769108 9.79452804169898 9.60844280099518 9.3813128405373 9.88008785212704 9.9707499926675 9.42237322242126 9.12300623283366 0.105380142609400 0.101396752771184 0.104764948696764 0.105197063773146 0.106987805176046 0.114911301741676 0.106479440226102 0.102562722492224 0.107506399037112 0.107129655906000 0.107917897182633 0.105172356060309 0.106494648498749 0.102180318560958 0.103750978686056 0.104286804956097 0.110301170888754 0.107130751430423 0.107861668216168 2 2|0 +|/ 16460481 16461655 16461232.2 16459690 16461879 + gene protein_coding_gene FALSE TRUE AT2G39400.1 hydrolase, alpha/beta fold family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G55180.1); similar to Os12g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066522.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.34279597419823 4.75721288257049 0.00125164590014616 1 6.18646031578152 18.9269857322839 0.34279597419823 0.0359096854933384
AT3G24503_at 10.4431973531708 10.5152011952310 10.8840114901897 10.7119066816426 10.6717219015777 9.89167323912002 9.51014044857135 9.2812464924524 9.64910560633838 9.50107557024547 10.4796579652208 10.8720832252064 10.3819437557587 10.3790356132137 10.1048493784276 10.1450690560313 9.07415687050864 9.88051039608585 9.71577450262845 0.117742062448883 0.112588333314418 0.122347926888613 0.116956961215187 0.113059446797783 0.119737813461656 0.118610851452410 0.117124308182471 0.132267073768347 0.118488931571588 0.112588333314418 0.112588333314418 0.114612377611459 0.119068730497367 0.116490678793088 0.112588333314418 0.139744452174604 0.117993076775559 0.116342006310284 3 3 - 8919740 8920662 8920080.727 8919567 8923080 - gene protein_coding_gene FALSE TRUE AT3G24503.1 ALDH2C4 (REDUCED EPIDERMAL FLUORESCENCE1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectively Identical to Aldehyde dehydrogenase 2C4, cytosolic (EC 1.2.1.3) (ALDH1a) (Protein REDUCED EPIDERMAL FLUORESCENCE1) (ALDH2C4) [Arabidopsis Thaliana] (GB:Q56YU0;GB:Q9LV57); similar to ALDH2B4 (ALDEHYDE DEHYDROGENASE 2), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT3G48000.1); similar to cytosolic aldehyde dehydrogenase RF2C [Zea mays] (GB:AAL99609.1); similar to aldehyde dehydrogenase [Crocus sativus] (GB:CAD70567.1); similar to cytosolic aldehyde dehydrogenase RF2C [Zea mays] (GB:AAL99608.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.572530005964314 4.75458865143881 0.00125602731448779 1 6.18342089659101 20.1319616047248 0.572530005964314 0.144339725484072
AT3G60630_at 7.40200325129126 7.75985950363156 6.03429395275331 6.34163636855448 7.24946025154983 7.22535803920052 7.74499671046665 7.74581720994397 7.08635135118997 6.99939797008433 7.15604469051111 7.85802055695727 6.74342093040742 7.59246875428822 7.7404372625829 7.19608282214918 6.195135819994 6.9989063138861 7.13068639578918 0.199139863382519 0.201150183898792 0.210541625406966 0.201143740449217 0.19865250615926 0.201370112060173 0.215080347796131 0.197273051981502 0.225650753542456 0.201160873976122 0.196135920072782 0.202424991664038 0.202835121951228 0.197677413953649 0.205221030983228 0.195226791283897 0.216016496554617 0.205799829650981 0.198609280920905 3 3 - 22421512 22422045 22421785.545 22421340 22423583 - gene protein_coding_gene FALSE TRUE AT3G60630.1 scarecrow transcription factor family protein similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G45160.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85338.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.418781305496479 -4.75391030726263 0.00125716257542296 1 6.18263502623232 14.3165331023580 -0.418781305496479 0.081740085234552
AT3G15530_at 8.44957831478836 8.69761565427151 8.05917468726358 7.99325036068363 9.15047837199541 8.94193402556721 7.41625761238337 7.72632376570487 8.12719496945497 7.84406971112453 8.23127776867807 8.47174880288736 8.3813253738368 8.57571231357467 8.22835464117592 8.47039942782705 8.216294755518 8.39731255196902 8.06452459931368 0.166318069337095 0.152842442735212 0.160493617142570 0.164051041150968 0.159838991014534 0.166908404400337 0.169392182302898 0.159467767472327 0.168345553545714 0.16193889235919 0.164214877104133 0.159921586984728 0.152417196788422 0.168741720940561 0.163005385565134 0.155999439785885 0.166117306047697 0.161228452027940 0.159318811245803 3 3 - 5253295 5253909 5253603.545 5252882 5254569 - gene protein_coding_gene FALSE TRUE AT3G15530.1|AT3G15530.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54400.1); similar to conserved hypothetical protein [Chloroflexus aurantiacus J-10-fl] (GB:ZP_00766604.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.411694484529699 4.7509395945324 0.00126214738788886 1 6.17919243464735 16.4960680812811 0.411694484529699 0.0784493845324233
AT4G17170_at 9.83905168350327 10.0630022444424 10.3158790362852 10.3252616105248 10.6106406952911 10.4887509165845 10.1831835221895 10.0445584877849 9.8633359789974 10.0302423758334 10.6956206617404 10.2216319428407 10.2443760917628 10.2860421004637 10.3176863230318 10.2872366259256 10.0167908783208 10.3932238881260 10.0718361242360 0.0975326783659887 0.0899935105930464 0.0927405338710586 0.0953405097174758 0.0969614965157325 0.0911765677711841 0.0955840641007214 0.0936995414539887 0.102175827784653 0.09528715152476 0.091151203649776 0.0916932175192716 0.0945193898787404 0.0984689540835478 0.0911957253421531 0.0924119051785356 0.0969798682871387 0.094847987845131 0.0919503879282333 4 4|0 -|/ 9644935 9645964 9645542.6 9644724 9646377 - gene protein_coding_gene FALSE TRUE AT4G17170.1 AT-RAB2 (Arabidopsis Rab GTPase homolog B1c); GTP binding member of RAB gene family similar to ATGB2 (GTP-BINDING 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G35860.1); similar to small GTPase Rab2 [Nicotiana tabacum] (GB:AAL28022.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.361019325597802 4.74828119110349 0.00126662628845581 1 6.17611040359549 20.3819398031001 0.361019325597802 0.0502502307403792
AT1G45688_at 7.59722770426505 7.84353518298909 7.41682859165296 7.47542386028973 7.65350344122098 7.56781894961433 9.00535812932447 8.87701466304756 8.66984480444512 8.56744746914627 9.12744799760696 8.87123632745125 8.61556307983698 8.71610720607781 8.77309101881966 8.44038022214681 8.09481256946674 8.7870733091543 8.5654869276712 0.117386505431125 0.110730481027888 0.121594051673022 0.116459688682837 0.114630057953007 0.113553785521045 0.113815397052119 0.113435859991785 0.126451996920773 0.113542742958878 0.110198857168097 0.112745129510449 0.110198857168097 0.115024625793802 0.114493980951165 0.112467705385903 0.117356673926796 0.112425572527959 0.111083145572779 1 1 + 17194377 17195286 17194941.636 17193840 17195598 + gene protein_coding_gene FALSE TRUE AT1G45688.1|AT1G45688.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42860.1); similar to H0814G11.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86345.1); similar to CAA30379.1 protein [Oryza sativa] (GB:CAB53482.1) -0.362551321656422 -4.7474018329598 0.00126811162190810 1 6.17509063394731 16.569158998671 -0.362551321656422 0.0513114102535657
AT2G37470_at 6.54736476141156 6.82578079947847 6.78052901795732 6.70949020521138 6.8555429820546 6.78753739859945 7.84722157417584 7.92795356103973 6.92679684745907 7.43931738689843 7.21438846935455 7.2321286351896 6.62988447919501 6.92295264737002 7.31059064024955 7.28668782442524 6.84907376794206 6.49302641714561 7.28997978222403 0.191558766288601 0.193097521342374 0.190283610487965 0.193721021272626 0.200745060373436 0.200161302370265 0.193618969865168 0.205394153815524 0.193446092680728 0.191824104746871 0.193332172199390 0.194536510992197 0.192199868054783 0.204299393401627 0.194571263282556 0.193415728763431 0.19488034550638 0.194647435771027 0.190283610487965 2 2 + 15743945 15744299 15744157.273 15743842 15744446 + gene protein_coding_gene FALSE TRUE AT2G37470.1 histone H2B, putative Identical to Histone H2B.4 (HTB5) [Arabidopsis Thaliana] (GB:Q9ZUS0); similar to histone H2B, putative [Arabidopsis thaliana] (TAIR:AT3G53650.1); similar to Probable histone H2B.3 (GB:Q1SU99); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) -0.365080834244464 -4.74703683555019 0.00126872869649130 1 6.17466731438879 14.1406973453091 -0.365080834244464 0.052974069593078
AT1G07640_at 7.75718380819434 7.81817634068358 8.42700509981973 8.24547123159517 7.45697178533824 7.19626103696866 6.53720752745564 6.84491895762531 4.59684291039761 4.44408028247109 4.38115506088501 5.21118927098023 4.81014923621672 4.28573882276425 4.99670910684526 5.51332725638331 4.8407875871093 4.99087810722864 4.9180320646137 0.249746874211181 0.249746874211181 0.256888972384629 0.263401460244875 0.249746874211181 0.256755214271886 0.249746874211181 0.253855520364921 0.283715952770135 0.255658556798098 0.256973521994704 0.252016403128721 0.253480849298943 0.252658440621964 0.257570231295459 0.249746874211181 0.260884969124235 0.253417703012999 0.252729990971038 1 1 - 2354704 2355225 2354965.545 2354351 2356224 - gene protein_coding_gene FALSE TRUE AT1G07640.1|AT1G07640.2|AT1G07640.3 OBP2 (OBF BINDING PROTEIN 2); DNA binding / transcription factor|OBP2 (OBF BINDING PROTEIN 2); DNA binding A member of the DOF transcription factors. Prominently expressed in the phloem of leaves and other organs. Expression is induced by wounding, MeJA and insect feeding. Upregulates glucosinolate biosynthesis. Identical to Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF-binding protein 2) (DOF1.1) [Arabidopsis Thaliana] (GB:Q8L9V6;GB:Q8W4A2;GB:Q9LQN7;GB:Q9XGU6); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G28810.1); similar to Dof domain, zinc finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95257.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851)|Identical to Dof zinc finger protein DOF1.1 (AtDOF1.1) (OBF-binding protein 2) (DOF1.1) [Arabidopsis Thaliana] (GB:Q8L9V6;GB:Q8W4A2;GB:Q9LQN7;GB:Q9XGU6); similar to Dof-type zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G28810.1); similar to Zinc finger, Dof-type [Medicago truncatula] (GB:ABE94576.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.408906175082427 4.74665350642225 0.00126937711303004 1 6.17422270791104 12.3012629193996 0.408906175082427 0.0772628614630822
AT1G41830_at 8.27805982372648 8.68092018138914 7.31101140297957 7.77408061779958 7.80391089849833 7.03893143604676 10.1545404618510 10.1648163320629 9.06597404270566 9.50619563791948 10.1831594767275 10.3180509627551 9.6199350763785 9.92040948573082 10.1494040741309 9.55360410270644 9.18823404570014 9.97581896237665 9.35762917013641 0.173611721358157 0.164002860332537 0.190444007682422 0.178488611846756 0.17215534445129 0.215110050335185 0.164212093121542 0.161144706901284 0.191369358070583 0.160401059717483 0.162371685652748 0.163710246975594 0.167242086239103 0.162994383264826 0.165485955813336 0.162555226714582 0.183700145560066 0.173709519298953 0.169267125871395 1 1|0 -|/ 15606347 15607068 15606699.5 15606058 15610407 - gene protein_coding_gene FALSE TRUE AT1G41830.1 SKS6 (SKU5 Similar 6); pectinesterase similar to SKS8 (SKU5 Similar 8), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21850.1); similar to SKS5 (SKU5 Similar 5), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G76160.1); similar to SKS7 (SKU5 Similar 7), copper ion binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G21860.1); similar to pectinesterase [Solanum lycopersicum] (GB:CAB08077.1); similar to PS60 [Nicotiana tabacum] (GB:CAA65634.1); similar to Multicopper oxidase, type 1 [Medicago truncatula] (GB:ABE89109.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.641978268933451 -4.74578239870129 0.00127085196038953 1 6.17321224954448 17.9875388810778 -0.641978268933451 0.169737316008468
AT2G37860_at 7.3307148023507 7.34251420725362 6.38467209041308 6.31811716971105 7.19312282032138 6.15344549949309 8.27717069303416 8.15411346834555 7.43191233893324 8.084807283571 7.76703625038618 8.17800212108844 7.55034765104997 7.78481280122479 7.97612186909189 7.76786806977176 7.31114842094108 7.41399620047244 7.90123269683679 0.183958963388088 0.179249780451018 0.189501090333294 0.186445593183680 0.187533246250712 0.21264997942799 0.188787566840166 0.184516435884872 0.191585244705195 0.178035877256802 0.180344826716934 0.180138061975857 0.176984981098444 0.188763041368039 0.186398129089272 0.178332269232453 0.185602812915982 0.198765876046228 0.177019598744094 2 2|0 +|/ 15864976 15865754 15865351.625 15863708 15865998 + gene protein_coding_gene FALSE TRUE AT2G37860.1|AT2G37860.2|AT2G37860.3 LCD1 (LOWER CELL DENSITY 1) Encodes a protein of unknown function. Mutants have pale leaves, lower cell density in the palisade parenchyma and increased sensitivity to ozone and virulent Pseudomonas syringae similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to Os07g0240300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059263.1); similar to OSIGBa0153E02-OSIGBa0093I20.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67884.1); similar to unknown [Euphorbia esula] (GB:AAF31706.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22790.1); similar to Os04g0524400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053349.1); similar to OSIGBa0153E02-OSIGBa0093I20.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67884.1); similar to unknown [Euphorbia esula] (GB:AAF31706.1) -0.675553165602525 -4.7442810677862 0.00127339817425581 1 6.17147042848395 14.9065592335905 -0.675553165602525 0.181554120914746
AT4G13250_at 10.6326517678966 10.7824360875198 10.9392899578831 10.9290681519212 10.6968186405809 10.5497082342635 9.92138912830064 9.97095793019544 8.81948373523679 9.2022128014884 9.32251764554054 9.0398290147115 9.01641100706813 8.82244698590891 9.18952032717682 8.94471867838345 9.5739748028065 10.1007508138505 9.02660755194522 0.121174361622402 0.117802411837602 0.122046875328348 0.117676363172750 0.118701402069443 0.123803074854650 0.122174991838821 0.121246802906221 0.131526945975100 0.116087905703245 0.119257909680919 0.118912103229393 0.115781046905287 0.121334816835725 0.121572953883476 0.123187486216315 0.125124390509390 0.116292924515419 0.118911234345882 4 4|0 -|/ 7684424 7685186 7684802 7684231 7686872 - gene protein_coding_gene FALSE TRUE AT4G13250.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G04900.1); similar to Os01g0227100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042468.1); similar to unknown [Xerophyta humilis] (GB:AAT45005.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.343516157112364 4.74393932304253 0.00127397853445485 1 6.17107388435993 19.6864762484806 0.343516157112364 0.0373727425160639
AFFX-Athal-25SrRNA_s_at 5.69437033091106 7.73264795029635 7.12423277904079 7.43725134089842 8.1540291077902 7.25650513882733 7.68515663251216 7.18686256649742 7.4754565776734 7.71345600980561 10.6729350801978 10.9256651966377 9.477984406227 10.2445547699573 10.0217831906461 10.0797913250790 8.22663616224306 8.1144331613006 7.16349637574479 0.193413472095040 0.179254700028625 0.200331276390738 0.18853591660685 0.179553005995108 0.181276735715551 0.186628697461124 0.180360435401820 0.188220815808985 0.183103644982349 0.186584455249528 0.18967588285377 0.182059949602302 0.189622035113162 0.182638791049531 0.186527355738251 0.18433269462403 0.180145163370475 0.182695147920078 NA NA NA NA NA FALSE FALSE 1.34395757268987 4.74393010759181 0.00127399418834604 1 6.17106319090191 15.8695199304854 1.34395757268987 0.398642321654112
AT4G39040_at 9.65136081297181 9.4562189635468 9.17920580914465 9.03111559732315 9.38286459645064 9.01877997080482 9.93897952687943 9.72579096281458 10.0471212553552 9.95911213462185 9.61375207619986 9.71170410188926 9.56373611799314 9.6083519379667 10.0389076725036 9.61659396911963 9.3537158586191 9.62940587169733 9.84097963969974 0.0936373108379581 0.092398422000518 0.096043096890040 0.0980124651310118 0.0941784369164433 0.099131563133789 0.093983918379249 0.0958284234576987 0.0946919508387144 0.0924195013142581 0.0930724635689468 0.0906838825120535 0.0915578610876145 0.0906838825120535 0.094736321124524 0.0927281040932982 0.0906838825120535 0.0918314671052403 0.0940089147678017 4 4 - 18189272 18190066 18189702.818 18189006 18190550 - gene protein_coding_gene FALSE TRUE AT4G39040.1|AT4G39040.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21350.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE78777.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.423573066133 -4.7437237480798 0.00127434477692593 1 6.17082373067061 19.2185855103124 -0.423573066133 0.0844283373577147
AT1G69523_at 5.99875528549593 6.12278478536374 6.13950144193901 5.89902722388342 6.28839031744204 5.80780732595649 8.8242963207899 8.28449599245984 6.9318817063582 7.76792096324966 7.69544359142056 7.50073973604079 7.46867041302663 7.80508777013375 7.42739795665506 8.24110962371435 7.86446107633174 7.07053382640753 7.63047081665412 0.193623619847393 0.192456429958433 0.197301977092105 0.190467768362747 0.194253090025017 0.21266691940467 0.212505264738492 0.203560774165915 0.213207394334498 0.193897655551499 0.191411161948713 0.194149823839107 0.199209126187123 0.190467768362747 0.190467768362747 0.194633746512829 0.205992605113088 0.193654227979282 0.192337023162443 1 1|0 +|/ 26134067 26134758 26134380.111 26133214 26134955 + gene protein_coding_gene FALSE TRUE AT1G69523.1 UbiE/COQ5 methyltransferase family protein similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT1G69526.2); similar to COG0500: SAM-dependent methyltransferases [Nostoc punctiforme PCC 73102] (GB:ZP_00110216.1); similar to Os02g0744100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048100.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.541572757463236 -4.73677288786042 0.00128621493714737 1 6.16275341861607 14.2094348339848 -0.541572757463236 0.133550172809009
AT4G14540_at 8.09021604356645 8.16740554823124 7.60542898489598 7.28964098726665 8.54357612303966 7.93449912665794 8.5888079184878 8.05035259476164 9.24990213891033 9.35364334684092 8.50112898258386 8.84767705722543 8.8554229104021 8.6652353434315 8.37174873857055 8.80216704127428 8.48754271935992 8.10003196347655 9.52916428861413 0.160675584427527 0.154135554882378 0.167943213233908 0.167955445812161 0.161019666603871 0.165597548136732 0.161966434839877 0.163663212298390 0.16316546909606 0.154333888661269 0.160532435563143 0.156345433106017 0.151403893261842 0.154303471617019 0.168082137963649 0.151837413428 0.164954319154550 0.157085278497345 0.15151717235749 4 4 + 8344661 8345116 8344912 8344612 8345214 + gene protein_coding_gene FALSE TRUE AT4G14540.1 CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family Identical to Nuclear transcription factor Y subunit B-3 (AtNF-YB-3) (Transcriptional activator HAP3C) (NFYB3) [Arabidopsis Thaliana] (GB:O23310); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family (Hap3b) [Arabidopsis thaliana] (TAIR:AT5G47640.1); similar to transcription factor Hap3b, putative [Brassica oleracea] (GB:ABD64993.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.58980490052233 -4.73566943400676 0.00128811031219935 1 6.16147144497168 17.0119605505279 -0.58980490052233 0.151518149231292
AT1G66130_at 8.11368439270195 8.27696250950106 8.31618800187922 8.1170226903713 8.9863304326257 8.600845867068 9.7730450694039 9.5122181683877 8.77392548498705 9.04370048142918 8.16628412089816 8.25099184036468 8.62309252541478 8.48563958722161 8.09618796318487 8.88522804206339 9.08357806013333 8.61954463662216 9.15493229405552 0.161763514205250 0.160871661239780 0.163140355029872 0.161248133791597 0.151078654564277 0.163994395571148 0.171676865858952 0.172258078526423 0.164574917996607 0.161358897218269 0.152876456177003 0.153546558870949 0.155968259954207 0.159333801127425 0.160304966285764 0.157646930137656 0.161596740992017 0.156045411806900 0.164468708412522 1 1|0 +|/ 24619588 24620304 24619843.2 24618625 24620593 + gene protein_coding_gene FALSE TRUE AT1G66130.1 oxidoreductase N-terminal domain-containing protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G09670.1); similar to Oxidoreductase family, NAD-binding Rossmann fold, putative [Medicago truncatula] (GB:ABE90143.1); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) -0.439207596757655 -4.73229195382654 0.00129393053086970 1 6.15754617420378 17.4706226917316 -0.439207596757655 0.0920539534682826
AT3G52180_at 9.18158052163052 9.11243503440589 9.09742013413214 9.04823546417617 9.21785468536753 8.94458568351628 9.10725206105209 8.95404699347035 7.59333098664265 8.94682420407974 9.13600403218835 8.90443843087824 9.10296184007656 9.24629399592788 9.12100799251323 8.59819165389936 8.74565888278694 9.04340868309143 8.17247334506948 0.120700602283020 0.118909041388151 0.119596045751913 0.128431981841876 0.121518645890982 0.128496887190532 0.123354102807789 0.119001230148818 0.140405809565270 0.118909041388151 0.126672867213665 0.123658420589612 0.119276762364090 0.125172175094909 0.128760754919733 0.121596352972309 0.131168369271466 0.128791833874394 0.130292935268622 3 3|0 -|/ 19360919 19362515 19361459.333 19360630 19364574 - gene protein_coding_gene FALSE TRUE AT3G52180.1|AT3G52180.2 SEX4 (STARCH-EXCESS 4); oxidoreductase/ polysaccharide binding / protein tyrosine/serine/threonine phosphatase|SEX4 (STARCH-EXCESS 4); protein tyrosine/serine/threonine phosphatase Encodes a plant-specific protein phosphatase that contains a protein tyrosine phosphatase (PTP) catalytic domain and a kinase interaction sequence (KIS) domain. This protein interacts with the plant SnRK AKIN11. Binds starch. Localized in the chloroplast. similar to protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G10940.1); similar to protein tyrosine phosphatase-like [Solanum tuberosum] (GB:ABB87109.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387)|similar to protein phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G10940.1); similar to protein tyrosine phosphatase [Solanum lycopersicum] (GB:CAC44460.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.368949091407303 4.7313748322156 0.0012955158618546 1 6.15647994821924 17.6953205893110 0.368949091407303 0.0561689614874605
AT3G57150_at 6.60655801130372 6.73427797863787 5.74074102247098 5.82008588202085 4.63574261065516 5.13816619534054 5.73859015970335 6.35404171443669 5.21427513445147 6.04685814870921 5.3857515342243 6.37506791159288 5.32416873284456 5.41347330064388 6.09268185129449 5.72468566107037 5.48203384028756 5.25678056077593 5.90714854466034 0.249824898874435 0.24599938534744 0.255926996018708 0.260459294934620 0.246969801850699 0.260571359269438 0.248468269035006 0.247230466336944 0.267024913993262 0.247041939989374 0.246586123234625 0.247839458954902 0.251735075678559 0.252761983800222 0.254215960646437 0.247259986773436 0.24599938534744 0.24907850852266 0.24599938534744 3 3 - 21165327 21165794 21165584.545 21164952 21166988 - gene protein_coding_gene FALSE TRUE AT3G57150.1 NAP57 (ARABIDOPSIS THALIANA HOMOLOGUE OF NAP57) Encodes a putative pseudouridine synthase (NAP57). Identical to H/ACA ribonucleoprotein complex subunit 4 (EC 5.4.99.-) (Nucleolar protein NAP57 homolog) (Nopp-140-associated protein of 57 kDa homolog) (AtNAP57) (NAP57) [Arabidopsis Thaliana] (GB:Q9LD90;GB:Q42348;GB:Q94AA2); similar to pseudouridylate synthase TruB family protein [Arabidopsis thaliana] (TAIR:AT5G14460.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001187533.1); similar to hypothetical protein DDBDRAFT_0204297 [Dictyostelium discoideum AX4] (GB:XP_640508.1); similar to AAL007Cp [Eremothecium gossypii] (GB:NP_982535.1); contains InterPro domain Pseudouridylate synthase TruB, N-terminal; (InterPro:IPR002501); contains InterPro domain DKCLD; (InterPro:IPR012960); contains InterPro domain Putative rRNA pseudouridine synthase; (InterPro:IPR004802); contains InterPro domain Uncharacterized domain 2; (InterPro:IPR004521); contains InterPro domain PUA; (InterPro:IPR002478) -0.557806611790226 -4.7307188309834 0.00129665111083623 1 6.155717201613 11.5233209635038 -0.557806611790226 0.139930300933655
AT2G47800_at 6.33366562918761 7.23987517048065 7.65894122520748 7.55189241268688 3.95056718452355 3.97160028747827 4.84836463242043 5.35438275500403 5.41114143990187 5.42752539918003 4.05781719188376 4.46094204239141 3.93477233063538 3.59235805646752 3.87107920154878 5.22764138224997 4.26982952876014 4.27895548332491 5.3363976571326 0.229042905816229 0.230943811570976 0.229906236655258 0.225091258401471 0.237321348144044 0.240380681172091 0.236578184948755 0.226279887643297 0.231857838916457 0.230062808980645 0.231992448869435 0.226280735604751 0.227465251552701 0.239366145904497 0.238428556325272 0.226121670776960 0.227159817177565 0.230265294301564 0.228038143780556 2 2 + 19586648 19587411 19587048.636 19581936 19587652 + gene protein_coding_gene FALSE TRUE AT2G47800.1 ATMRP4 (Arabidopsis thaliana multidrug resistance-associated protein 4) Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim. Identical to Multidrug resistance-associated protein 4 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 4) (ATP-energized glutathione S- conjugate pump 4) (MRP4) [Arabidopsis Thaliana] (GB:Q7DM58;GB:O24525); similar to ATMRP10 (Arabidopsis thaliana multidrug resistance-associated protein 10) [Arabidopsis thaliana] (TAIR:AT3G62700.1); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59595.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59596.1); similar to ABC transporter, transmembrane re (GB:ABE85045.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.670417766273117 -4.72732314529937 0.00130254477674107 1 6.1517677177449 10.6653424459049 -0.670417766273117 0.180605729920385
AT1G06050_at 5.74633648244627 5.66932433066157 5.72999976190783 5.6629886559661 5.093903101241 5.27497030351852 5.00835377524679 5.11294802365202 5.25218598172757 3.98072579750472 3.92678718488532 3.63786786434636 4.11124828434078 4.11645983517584 2.90341112092841 4.42101927236705 3.87071028575632 3.83716904677978 4.56937935771564 0.222873232013324 0.222686613353750 0.22787305416289 0.23646613166407 0.221645824920508 0.227829126841856 0.219442266345202 0.221836120354612 0.226856908070979 0.223976806568804 0.222787573437467 0.223795317232022 0.217503690834096 0.223414156888674 0.230496977710178 0.222981083115105 0.239823698837706 0.237517037520329 0.217793682809559 1 1 - 1830835 1831283 1831037.455 1830604 1832552 - gene protein_coding_gene FALSE TRUE AT1G06050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G10750.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10188.1); similar to Os08g0152600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061005.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10187.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) -0.345727398918396 -4.72645716781549 0.00130405242994011 1 6.15076017435602 9.63927696639924 -0.345727398918396 0.0402688379957327
AT1G64880_at 5.97773061140091 6.46996440807323 5.75518984279809 5.7576955405475 5.41417846011646 5.18920327948806 6.6287603698626 6.81624625412262 5.19166194209073 5.75036325498833 5.38546180979101 6.78136975555129 5.23189936312971 4.9094354987847 6.51645861784807 6.46845506169998 5.17977165727341 5.79813008995676 6.30565528985578 0.214501094629753 0.218629088542232 0.212712421129148 0.214326031585055 0.211794985494452 0.215961430554464 0.218544935364264 0.210046732667494 0.228528994079868 0.210046732667494 0.212603100409172 0.213935413507653 0.213214613487939 0.233050410466927 0.21740104683572 0.210110401343998 0.226704508982200 0.221242104936001 0.210046732667494 1 1|0 +|/ 24110411 24112404 24111798.667 24109305 24112809 + gene protein_coding_gene FALSE TRUE AT1G64880.1 ribosomal protein S5 family protein similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT2G33800.1); similar to Ribosomal protein S5, eukaryotic and archaeal form [Medicago truncatula] (GB:ABE85036.1); contains InterPro domain Ribosomal protein S5, bacterial and chloroplast; (InterPro:IPR005712); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.454731363675613 -4.72623312245028 0.00130444279673527 1 6.15049948096492 11.7676708761675 -0.454731363675613 0.0991204752111578
AT3G07740_at 5.87115339449655 6.21375422277921 5.438879764137 5.30616520496647 6.55167140778787 5.74557546320781 6.02434808697653 6.3425520012582 5.39388353377736 5.88955230308026 4.93936467949 5.07441300082422 5.14318878859924 5.04726971243178 4.27594137125373 5.13520225425077 4.18999459055402 4.88536544810618 5.88886543042532 0.222076224810303 0.214970656862617 0.217941803333699 0.220568205584052 0.215078587730973 0.230037110599878 0.215279868487933 0.216847014378824 0.233776165610128 0.219473920457751 0.222848818058165 0.220500623375838 0.219578045717593 0.219206417289924 0.227273704352395 0.215562363647239 0.222953648575698 0.223345055606513 0.214970656862617 3 3 - 2470089 2470769 2470386.091 2469789 2473101 - gene protein_coding_gene FALSE TRUE AT3G07740.1|AT3G07740.2|AT3G07740.3 ADA2A (Arabidopsis adaptor 2A homolog); DNA binding / transcription factor|ADA2A (Arabidopsis adaptor 2A homolog) encodes a transcriptional adaptor ADA2a that interacts with histone acetyltransferase GCN5 homolog and CBF1 Identical to Transcriptional adapter ADA2a (AtADA2a) (ADA2A) [Arabidopsis Thaliana] (GB:Q9SFD5;GB:Q9SSE2); similar to ADA2B (PROPORZ1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G16420.2); similar to histone acetyltransferase complex component [Zea mays] (GB:AAM77037.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Transcriptional adapter ADA2a (AtADA2a) (ADA2A) [Arabidopsis Thaliana] (GB:Q9SFD5;GB:Q9SSE2); similar to ADA2B (PROPORZ1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G16420.2); similar to histone acetyltransferase complex component [Zea mays] (GB:AAM77037.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.620068454045868 -4.72591262554775 0.00130500143623891 1 6.1501265432318 11.2169838947594 -0.620068454045868 0.162895177935304
AT2G31230_at 4.6073126080513 4.81232596702199 4.94005542784722 4.51322597680794 5.42575868652355 4.98121276601171 4.84271384573044 5.13800423449365 3.93517209679903 4.18242943646672 5.2130816148187 5.53767057815029 5.15174609201819 5.1272326063437 4.73492827674721 4.45741841515533 5.16317571173378 5.22349031761438 4.37132555850153 0.216205323057047 0.209568419294920 0.211435499616184 0.208145291258409 0.220554824886950 0.223969919792716 0.212976800850719 0.21478193544663 0.21264660550305 0.21588638184591 0.217085281522829 0.209755825817374 0.205353527795749 0.204871270549633 0.210705720593221 0.207965410256471 0.221820215253640 0.222472873540254 0.216527110775404 2 2 - 13313756 13314328 13314091.455 13313670 13314552 - gene protein_coding_gene FALSE TRUE AT2G31230.1 ATERF15 (ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 15); DNA binding / transcription factor/ transcriptional activator encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. Identical to Ethylene-responsive transcription factor 15 (Ethylene-responsive element-binding factor 15) (EREBP-15) (AtERF15) (ERF15) [Arabidopsis Thaliana] (GB:Q8VYM0;GB:Q9SJX3); similar to ethylene-responsive factor, putative [Arabidopsis thaliana] (TAIR:AT1G06160.1); similar to ethylene responsive element binding protein [Lycopersicon esculentum] (GB:AAN77067.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.514045652395101 4.72453860834718 0.00130739934074389 1 6.14852749334153 9.5271105134752 0.514045652395101 0.123468329355371
AT1G06240_at 4.8749749351098 4.89782191147156 4.24265008810852 4.90018139241237 4.92786279926784 4.21574387387679 6.29366746213362 6.3222830657304 5.34199319714363 5.84522453333008 5.36330912433448 4.97497155588293 5.24136008422575 5.5202895622817 4.95056047361897 5.59494372960204 5.60278893802302 4.72072763709874 5.27578024076442 0.219579630749904 0.216246230241713 0.218222904427557 0.221830387529502 0.221462528861153 0.258103233513891 0.224809334843699 0.221726374672044 0.229153433401399 0.215462040287671 0.215462040287671 0.224005942385101 0.224018874083949 0.216787955992795 0.215462040287671 0.222079644780170 0.241532366891976 0.220137715243764 0.217578493654385 1 1|0 +|/ 1911803 1912803 1912190.444 1911121 1913204 + gene protein_coding_gene FALSE TRUE AT1G06240.1 oxidoreductase/ transition metal ion binding similar to oxidoreductase/ transition metal ion binding [Arabidopsis thaliana] (TAIR:AT5G04520.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73001.1); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Protein of unknown function DUF455; (InterPro:IPR007402) -0.633562203737109 -4.72279814811955 0.0013104435988969 1 6.14650149379354 10.4512906302869 -0.633562203737109 0.167854247577788
AT4G35905_at 5.10735842922995 5.44948036827548 4.17369022805082 4.38740026810397 4.77184296033459 4.54321568112496 5.17062756145515 5.56018705861529 4.72002420521471 5.10926697597518 5.03209332468011 5.09384059011832 4.93724233101134 5.05578228321429 4.97111604673462 4.42931882183953 4.49604845069688 4.86768500711452 4.99966049862184 0.216433837586644 0.209615838388595 0.219491988110298 0.207503450028217 0.202315519380987 0.219625952552621 0.203969297304848 0.211966256532729 0.221768504629295 0.20855077222049 0.203172289819151 0.20460439133481 0.204548749379491 0.212033846396595 0.209211672891585 0.205697952222172 0.218542936933205 0.211266906321199 0.214156106478581 4 4|0 -|/ 17007329 17008045 17007822.444 17007031 17008157 - gene protein_coding_gene FALSE TRUE AT4G35905.1 similar to Protein of unknown function DUF343 [Medicago truncatula] (GB:ABE93448.1); contains InterPro domain Protein of unknown function DUF343; (InterPro:IPR005651) -0.467734553167381 -4.7226940599653 0.00131062590349421 1 6.14638031155885 9.79716269449717 -0.467734553167381 0.104801201012866
AT1G22190_at 5.32400129007351 5.51663982690427 6.41267716496743 6.3015956879175 7.61080559760922 6.96187542258508 6.25121480154876 5.9467149250775 5.08133335052685 5.5706358915394 5.44704983583317 4.93170110194039 5.34662082308216 5.4874915165834 4.89802160308825 5.95682723056644 6.42269657363439 5.8059370988646 5.96550844986758 0.236911323648782 0.239519852543530 0.235754168976163 0.229766190051157 0.248637538564568 0.230648168102284 0.237050394117920 0.239670324069162 0.235046275154370 0.244099996242745 0.230110860249749 0.230635696098210 0.235717469740185 0.254952953337377 0.233348956537078 0.229766190051157 0.239083168725418 0.24241566709956 0.240282350332483 1 1 + 7836452 7836989 7836749.455 7835771 7837277 + gene protein_coding_gene FALSE TRUE AT1G22190.1 AP2 domain-containing transcription factor, putative similar to RAP2.4 (related to AP2 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G78080.1); similar to putative AP2-binding protein [Jatropha curcas] (GB:AAZ14831.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.529989874836646 4.71930386632288 0.00131657866365331 1 6.14243228235932 11.8287918163823 0.529989874836646 0.129880868323702
AT1G71695_at 9.77693779698793 9.8714445003044 8.77096356201765 8.90908367839173 9.3591474270475 9.3901445825755 10.7051081155977 10.6010134883622 9.66298172292084 10.0795510533194 10.2801889951931 10.5186217015031 10.5025639322463 10.2098005408356 10.5095149036758 10.3354559434822 10.2505526503496 10.3106906499474 9.98879834628572 0.0918324477408872 0.0884829758337424 0.0986412387296963 0.0990369287952272 0.0929060296661196 0.0882612330773955 0.0938165403964098 0.0935947001980196 0.0976175227843465 0.090930018308401 0.092904929950307 0.0877016772875845 0.0925259654950991 0.087893757632453 0.0911539651214163 0.0877016772875845 0.0936718976447545 0.0912510727809427 0.0919459010336813 1 1 + 26969647 26970129 26969863.818 26967911 26970350 + gene protein_coding_gene FALSE TRUE AT1G71695.1 peroxidase 12 (PER12) (P12) (PRXR6) Identical to Peroxidase 12 precursor (EC 1.11.1.7) (Atperox P12) (PRXR6) (ATP4a) (PER12) [Arabidopsis Thaliana] (GB:Q96520;GB:Q43734); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT4G08770.1); similar to peroxidase [Nicotiana tabacum] (GB:AAK52084.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.338530602829726 -4.71915045404569 0.00131684872741381 1 6.14225357772949 19.8105390799920 -0.338530602829726 0.0345265516703471
AT3G11800_at 7.13768618957471 7.49723527461869 6.92361985245779 7.3178834882773 7.16299431146914 7.12903684244024 5.74999171880849 6.89060601211616 6.63864442987589 6.57802154544378 8.5022071945405 8.28544675795875 8.15363533730751 7.89144013666314 8.00053751183898 7.58720618226354 6.72073373575482 7.53562472844117 6.56000421490114 0.233437736214836 0.228094880193095 0.225765623833450 0.222244254585560 0.224804573668611 0.219266088066362 0.221827184358556 0.225182514402567 0.226859115659145 0.22411426869672 0.225638298046160 0.22140468054247 0.231630390739295 0.228810082898967 0.228514757861237 0.22566406710601 0.241778843710033 0.23083612521185 0.22553425227986 3 3 + 3726336 3727508 3726915.182 3726114 3727734 + gene protein_coding_gene FALSE TRUE AT3G11800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G44150.1); similar to expp1 protein precursor [Solanum tuberosum] (GB:CAJ77501.1); contains domain FAMILY NOT NAMED (PTHR21454); contains domain SUBFAMILY NOT NAMED (PTHR21454:SF1) 0.778442188118699 4.71908398089832 0.00131696576395842 1 6.14217614414478 14.1895453836385 0.778442188118699 0.217998975659334
AT1G09100_at 7.11679367175925 7.07209576498808 7.5916087573166 7.85912686112905 7.76239904419797 7.6151404423818 6.74451035411344 6.94060118857479 6.12122933445094 5.9071527146433 6.05221741906128 5.94706286463594 6.60067835708146 6.13632205502195 5.66501223310731 5.81965963652651 5.68715641559193 6.6379256051118 6.1119369408183 0.237152383209054 0.230210383482719 0.244932516813401 0.237160382364584 0.235528965255330 0.236293742153312 0.231659874623787 0.237991031505253 0.237435006898697 0.236611149602465 0.231444577008850 0.239718182482314 0.233611622607884 0.233270415638855 0.233625514000577 0.236606137573907 0.245726771106070 0.238839809867462 0.237497388083286 1 1|0 -|/ 2936903 2937757 2937351.8 2936530 2939328 - gene protein_coding_gene FALSE TRUE AT1G09100.1 RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B); ATPase/ calmodulin binding This subunit was shown to interact with the gene product of hexokinase1 (ATHXK1). This interaction, however, is solely restricted to the nucleus. Identical to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) [Arabidopsis Thaliana] (GB:O04019); similar to RPT5A (regulatory particle triple-A 5A), ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G05530.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABE80601.1); similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (GB:O23894); similar to Tat binding protein like protein [Brassica rapa] (GB:BAB21595.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.380024929013612 4.71902857162135 0.00131706332939894 1 6.14211159808633 13.39529817051 0.380024929013612 0.0632775862913915
AT1G65370_at 3.9895190281515 4.01154774845550 4.93071758935122 4.68202067224799 5.31345196250602 4.40040890894302 4.62022694869332 3.98012139825555 4.09716624551876 5.33976853768866 5.87438616365726 6.48647340203013 5.56184044079516 5.70822714033395 6.60591474236133 5.71370860564426 5.89473091858989 5.48955084701722 6.04492058950065 0.240758184156902 0.247594557721936 0.236956001981442 0.240760806686811 0.245898001095663 0.239465056867682 0.239978192429830 0.240692034401945 0.248139058433068 0.238248770977606 0.237213437715944 0.245064183881804 0.23877287595297 0.245787037957389 0.236422978199257 0.238314365272027 0.242718161137263 0.236963029115042 0.237910049924556 1 0|1 /|- 24288432 24289097 24288731.444 24288132 24289808 - gene protein_coding_gene FALSE TRUE AT1G65370.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G65150.2); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) 0.718765788678693 4.71886125188844 0.00131735799581440 1 6.14191668457856 10.0297380271370 0.718765788678693 0.197746146561177
AT3G55270_at 6.39226480886998 7.04148542710884 7.00177423404356 7.19331650200822 7.35974909891104 6.9886505875494 5.54389364073096 5.41187244640656 4.53571011024618 5.10626845615414 4.9749095343428 5.11597776978291 5.22741857460762 4.97747236823787 4.75493047095765 5.39382892973135 4.98063553734333 4.33114531821258 5.11442351262674 0.235893542678366 0.236775072045249 0.236131494978352 0.229960374798074 0.225875909267632 0.234060389255763 0.235849653009545 0.242788509699094 0.234880566144289 0.228970173510175 0.233819306186271 0.227711901614182 0.225875909267632 0.232042478725902 0.226810151391944 0.228195888295621 0.228124435714545 0.232129661445616 0.229063915889692 3 3 + 20509519 20510352 20509777.364 20507058 20510996 + gene protein_coding_gene FALSE TRUE AT3G55270.1 MKP1 (MKP1); MAP kinase phosphatase MAP kinase phosphatase (MKP1) similar to MAP kinase phosphatase [Zea mays] (GB:AAK29383.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340) 0.544616322370983 4.71789339344521 0.00131906388917874 1 6.14078911072154 11.5607960961591 0.544616322370983 0.135527277131892
AT1G71730_at 7.30243952801226 8.01352424845679 6.68832579490144 7.0226679412587 7.82243844068756 7.61357198235863 8.15407207660891 8.5253475498132 6.94673895569568 7.20357300056205 6.78433507451547 6.73053968070354 6.77464900854013 6.40439906359858 6.97334678833889 6.53082820199701 5.96796654128568 6.74803782110227 7.12980961774842 0.258457657510593 0.252757015753281 0.263164153277207 0.261311511004916 0.252385048364924 0.257206150567174 0.26006733996751 0.256576878047908 0.271201839272489 0.254219806063211 0.251924961822364 0.25413868763944 0.252116452114346 0.262992547437776 0.256376495427955 0.249670796044023 0.265339758547517 0.257778601941565 0.249670796044023 1 1 - 26990090 26990462 26990332.091 26989750 26990571 - gene protein_coding_gene FALSE TRUE AT1G71730.1 similar to late embryogenesis abundant protein [Picea glauca] (GB:AAB01563.1) -0.595602948206528 -4.71273830026827 0.00132819031960261 1 6.1347804645272 14.4966167605183 -0.595602948206528 0.154678038316116
AT1G76730_at 9.89354776935244 9.76151356906722 9.71791088444745 9.6111912399383 9.74193178467035 9.34750829084797 10.2331853706275 10.1452743610972 9.99978164412572 10.0625100867233 9.57586694608905 9.69270033151174 9.28848309266367 9.8356674156955 9.4219549008438 9.87340406068754 9.63512732664048 9.35177096608935 9.89843818492432 0.143376091709850 0.135662388424432 0.141737030293691 0.146677448826038 0.132814993191512 0.143917960754404 0.139901884468799 0.141031593417433 0.143412948313067 0.147668612545440 0.140528879466413 0.141622717743263 0.150649501257167 0.140281190336605 0.138173707913160 0.137593424291621 0.145333462763432 0.136132478790380 0.143251212090392 1 1|0 -|/ 28807938 28808791 28808394.6 28807819 28809678 - gene protein_coding_gene FALSE TRUE AT1G76730.1 5-formyltetrahydrofolate cyclo-ligase family protein similar to hypothetical protein LOC509897 [Bos taurus] (GB:NP_001039507.1); similar to Os12g0168000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066251.1); contains InterPro domain 5-formyltetrahydrofolate cyclo-ligase; (InterPro:IPR002698) -0.40314140472844 -4.71250118940954 0.00132861173371842 1 6.13450397815384 19.5921488347321 -0.40314140472844 0.075852516445278
AT3G19480_at 6.81522303944946 7.02889889184364 6.87133832908935 6.79186048651283 7.13477810380612 7.01443609305532 8.5109561144678 8.57087665783543 8.27858240160282 8.3325680749492 8.22860333336499 8.30673104487626 8.23082184440257 8.36058836679313 8.33617813199966 8.81392618095675 8.1372113525944 8.35961331915702 8.20500132630865 0.159466107749348 0.147629588173536 0.165998497702568 0.153890819813642 0.154475339758113 0.151497265614942 0.157303251237204 0.158266067366062 0.154312115091686 0.151240199042064 0.142250554548208 0.144537373894832 0.14476315300412 0.154860246052016 0.143996030123170 0.142250554548208 0.156691591940221 0.144860982625977 0.143704266129526 3 3 + 6754095 6754607 6754303 6752537 6754791 + gene protein_coding_gene FALSE TRUE AT3G19480.1 D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to EDA9 (embryo sac development arrest 9), NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34200.1); similar to D-isomer specific 2-hydroxyacid dehydrogenase, catalytic re (GB:ABE86334.1); similar to H0212B02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68268.1); similar to putative D-3 [Oryza sativa (japonica cultivar-group)] (GB:BAD37553.1); contains InterPro domain D-3-phosphoglycerate dehydrogenase; (InterPro:IPR006236); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.351863413484318 -4.71153486550996 0.00133033066526223 1 6.13337707743275 15.6516758633683 -0.351863413484318 0.0458012530788364
AT1G07310_at 8.56581130361214 8.7463804932065 8.34650910048858 8.7828390550791 9.24613107113281 9.02816248816179 8.06297923396794 8.43561459960626 8.66054627895795 7.95790710972053 9.31842007992131 8.56942134633657 8.83197448600966 8.7518746550998 8.41712525886405 9.13297695493676 8.57793405337708 8.5641315440761 8.00250923577015 0.175528397477500 0.177971971067776 0.190967922202531 0.182958900125692 0.186115821080672 0.179566944040120 0.181402976210554 0.182263221313891 0.184363915066596 0.191025776062463 0.175190538405058 0.187354183342912 0.177580265111730 0.188662313060203 0.185864520415652 0.176557246614916 0.189629286419566 0.191290269920994 0.187470726411991 1 1 - 2247782 2248338 2248067.909 2247508 2248960 - gene protein_coding_gene FALSE TRUE AT1G07310.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23950.1); similar to C2 domain-containing protein [Hordeum vulgare subsp. vulgare] (GB:CAI58613.1); similar to Os09g0571200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063992.1); similar to Os01g0853800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044834.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.480854388481073 4.71140912263186 0.00133055451801023 1 6.1332304270452 17.1405383375622 0.480854388481073 0.110722056346942
AT4G23060_at 7.38132504957733 7.49927610772845 6.32803001017152 6.24796095371789 8.56646672953823 8.48449938185464 6.80808478942146 6.78929022423415 8.27909999766027 7.46394906790175 8.67929303849117 8.63910713886473 7.65286935561646 7.81719325327191 8.96190471920585 8.48296497409875 7.40904021398712 7.36840587967073 7.50692761558295 0.161109886353225 0.164197185122753 0.166795344699118 0.174008045910836 0.165393388419479 0.175900938434056 0.170636602839862 0.168034911813377 0.163744266427025 0.166067885169177 0.161195374353632 0.160736438417757 0.169890470648234 0.168583856373715 0.166383398829915 0.160736438417757 0.182137189099139 0.177115624394378 0.165976360261898 4 4 + 12089822 12090353 12090124.455 12087214 12090586 + gene protein_coding_gene FALSE TRUE AT4G23060.1 IQD22 (IQ-domain 22); calmodulin binding similar to IQD23 (IQ-domain 23), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G62070.1); similar to Os04g0569900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053598.1); similar to IQ calmodulin-binding re (GB:ABE86306.1); similar to OSIGBa0139P06.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67037.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.331800160341372 4.70698166508933 0.00133846249477329 1 6.12806497939469 15.2012864301300 0.331800160341372 0.0286432328396684
AT2G21340_at 8.35515505444864 8.1601236835292 7.76314343888757 7.73661670807057 8.4103565143346 8.20510445780429 8.96483296248745 8.79115678843449 8.31447755331747 8.84365710093358 8.5012048027364 8.48657817358371 8.25647868155008 8.1835194195137 8.630269662642 8.6741706733382 8.41373514124465 8.3715338651884 8.76079810413341 0.147839148590529 0.149099068423187 0.151745837155779 0.147136829857134 0.141561605587967 0.155464410457925 0.146737992948632 0.141925086513939 0.160483797103645 0.143784487877446 0.152732627519412 0.142494093474366 0.14256831407425 0.152087536889724 0.145632889137225 0.140816710006532 0.151822016947257 0.153087661162809 0.145440626582203 2 2|0 +|/ 9142346 9143243 9142785.444 9139638 9143539 + gene protein_coding_gene FALSE TRUE AT2G21340.1|AT2G21340.2 enhanced disease susceptibility protein, putative / salicylic acid induction deficient protein, putative similar to EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT4G39030.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88792.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88798.1); similar to expressed protein [Medicago truncatula] (GB:ABE88794.1); contains domain DNA-DAMAGE-INDUCIBLE PROTEIN F (PTHR11206:SF3); contains domain MULTIDRUG RESISTANCE PUMP (PTHR11206)|similar to EDS5 (ENHANCED DISEASE SUSCEPTIBILITY 5), antiporter/ transporter [Arabidopsis thaliana] (TAIR:AT4G39030.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE88792.1); similar to expressed protein [Medicago truncatula] (GB:ABE88794.1); contains domain DNA-DAMAGE-INDUCIBLE PROTEIN F (PTHR11206:SF3); contains domain MULTIDRUG RESISTANCE PUMP (PTHR11206) -0.369484896385435 -4.70697001541996 0.00133848336943178 1 6.1280513832119 16.8379764786343 -0.369484896385435 0.0576645362652761
AT1G29260_at 6.8992383590346 7.18860644831302 7.09336628259329 7.24300720922986 7.64306923286294 7.56639018062477 6.91112663055496 7.37652110694588 5.89938737531373 6.46820882291715 6.6439731960365 6.82140241108169 6.98367135686362 7.02854695306022 6.5414370457252 7.3656031020352 7.44051753828843 7.03657087108266 6.74032168601434 0.202914044244559 0.2024342081144 0.202534780326007 0.199781619646351 0.203368423347633 0.199038118352194 0.200639584647693 0.213418245985739 0.245425213802975 0.212792814970551 0.199155597908529 0.199038118352194 0.206057055735333 0.204516071568417 0.219518679180260 0.203267479698223 0.208992476160024 0.202633340051938 0.215231505925523 1 1 + 10225271 10225838 10225527.364 10224801 10226191 + gene protein_coding_gene FALSE TRUE AT1G29260.1 PEX7 (peroxin 7) Encodes the peroxisomal targeting signal type 2 receptor that facilitates peroxisomal protein translocation. It recognizes proteins with the PTS2 consensus sequence (RLX5HL or a variant) within the first 30 or so amino acids. RNAi experiments suggest that PEX7 is necessary for the maintenance of glyoxysomal but not leaf peroxisomal function. similar to MSI1 (MULTICOPY SUPRESSOR OF IRA1) [Arabidopsis thaliana] (TAIR:AT5G58230.1); similar to pectinesterase-like protein [Brassica rapa] (GB:ABD91573.1); similar to peroxisomal import receptor PTS2 [Brassica napus] (GB:ABB92566.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) 0.45299721898611 4.70627808954927 0.00133972384035561 1 6.12724380107003 13.9161763166133 0.45299721898611 0.099200934133197
AT3G07340_at 4.23941905237324 4.68964586074373 4.51954217426709 4.66755538356031 5.42867583718998 5.39317580914056 6.39216391108439 6.41168991152777 6.94364603641147 6.10876090037283 6.90146178432849 5.59147533310731 6.57878401781942 6.79147283182519 4.97254621729459 5.74981831543129 5.64083402603463 5.89984449180168 6.19663014583745 0.257998298620052 0.238929588976336 0.251264029717152 0.244293216372723 0.240369995046759 0.244233325984527 0.261744902326957 0.239631845755546 0.270258238799172 0.242098355349915 0.249334071643483 0.241998835680948 0.240293922815323 0.238988426907771 0.250054458302774 0.238902182428991 0.243482421128301 0.249537879121279 0.241470831275740 3 3|0 -|/ 2341209 2342213 2341672.5 2340905 2343476 - gene protein_coding_gene FALSE TRUE AT3G07340.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G48560.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); similar to Os01g0915600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045188.1); similar to Os11g0442500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067817.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.41577922494736 -4.70622151452487 0.00133982532190892 1 6.12717776561943 11.4337961531922 -0.41577922494736 0.0823153942564783
AT1G12900_at 12.8660812685590 12.9783149378061 12.5219199649103 12.466578974347 12.4064173099911 12.4046835527561 13.5780957763840 13.6939195565264 13.8802886955346 13.8323573750167 14.08427411963 14.2385781257482 13.7743295745687 13.9669485788139 13.9967172629486 13.9382152625392 13.5340379089735 14.019945330203 13.6270075920751 0.064803458549775 0.0633892798095491 0.0681581178200951 0.0644025668762753 0.0635460246590313 0.0677867856380104 0.0645813150795929 0.065363512641796 0.0685670500802392 0.0656420460584499 0.0667934646906394 0.0640000342443963 0.0634888824288556 0.066796112969153 0.072162580921632 0.0633892798095491 0.0670767352696236 0.0658070520032656 0.0663175726882052 1 1 - 4392653 4393273 4392948 4392448 4394398 - gene protein_coding_gene FALSE TRUE AT1G12900.1|AT1G12900.2 GAPA-2; glyceraldehyde-3-phosphate dehydrogenase|GAPA-2 similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] (GB:ABA86963.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P19866); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P12858); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173)|similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P19866); similar to Chain O, Crystal Structure Of Mutant T33a Of Photosynthetic Glyceraldehyde-3-Phosphate Dehydrogenase A4 Isoform, Complexed With Nadp (GB:1RM3); similar to Chain O, The Dual Coenzyme Specificity Of Photosynthetic Glyceraldehyde-3-Phosphate Dehydrogenase Interpreted By The Crystal Structure Of A4 Isoform Complexed With Nad (GB:1NBO); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) -0.332478359049190 -4.70525994360415 0.00134155141362877 1 6.12605531286155 26.7265090799785 -0.332478359049190 0.0295093347105577
AT1G29250_at 8.96970600541436 8.98903847763338 8.79095310736645 8.8537448975726 8.74315905534595 8.46922822090952 9.4221717994702 9.59740985430961 8.34000103916573 8.24708682723196 7.79498177192027 8.19844263563304 7.88880900645096 8.24545335646243 8.73102775387988 8.21916419228504 7.74289993188075 7.94878172479084 8.32273764303347 0.132876143929080 0.121356651451383 0.116530556578019 0.125707625025679 0.122864857994659 0.123939137840627 0.124217994338058 0.125664090830877 0.129069891709944 0.119950559175670 0.120983602943055 0.116530556578019 0.131049465125857 0.125744308916831 0.120565900037784 0.118433019056190 0.127611576350308 0.126493543764704 0.119883113492408 1 1|0 -|/ 10223453 10224522 10223836.556 10223252 10224713 - gene protein_coding_gene FALSE TRUE AT1G29250.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G34160.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15498.1); similar to Os06g0602600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058008.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) -0.368695168527868 -4.70218932442776 0.00134707952673424 1 6.12246982104745 17.1791615354894 -0.368695168527868 0.0574121806762481
AT3G61240_at 8.04183242855155 8.01513574092346 8.30342650591893 8.20204903843766 8.2895977226934 8.12693152518505 8.16387713711001 7.88413793480373 7.13108268745938 7.56130840512242 7.92781873308733 7.98358194457388 7.90626693943526 7.90822981131836 7.98665003409241 8.13564270719333 8.03478405021603 7.88746978605795 7.60882225145146 0.145540730803165 0.140563315222657 0.143332447874895 0.150745360403255 0.141874905901222 0.148702540303321 0.142145009724546 0.147814270125413 0.150279317947461 0.148286832600790 0.152949913922739 0.145434233939052 0.153261155101852 0.143104366659572 0.147933128922893 0.143365786400761 0.153675385692774 0.141199985172812 0.148920462805771 3 3|0 +|/ 22679206 22679904 22679434.333 22677158 22680732 + gene protein_coding_gene FALSE TRUE AT3G61240.1|AT3G61240.2 DEAD/DEAH box helicase, putative (RH12) Identical to DEAD-box ATP-dependent RNA helicase 12 (EC 3.6.1.-) (RH12) [Arabidopsis Thaliana] (GB:Q9M2E0;GB:Q9ZS08); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT2G45810.1); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G00660.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84720.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84723.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84719.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.370911553556986 4.69980321682478 0.00135139230661648 1 6.1196824369569 15.8308951452486 0.370911553556986 0.0588651530460342
AT2G03270_at 6.73715872564987 7.11559116342571 6.31118359732083 6.6464213250421 6.6696487175194 6.94432981753743 6.70250879324488 7.31781985790539 6.72798813005082 6.34797773223799 5.61971978792903 5.54151539330858 5.70280752284841 5.88445766356968 5.33796542008595 5.8538719562892 5.58508171475722 5.68510502702732 6.32022936392557 0.236172969976652 0.226555634762148 0.242144896705252 0.230774472614961 0.232099413630184 0.237494280820229 0.229824021969853 0.226390946604314 0.238120362748218 0.228682597991381 0.232601763862841 0.224899814502281 0.228879683516328 0.227549304976872 0.231992681843551 0.223348730036971 0.234865345812066 0.232086979061373 0.224366238567687 2 2 + 995433 995962 995669.636 993753 996125 + gene protein_coding_gene FALSE TRUE AT2G03270.1 DNA-binding protein, putative similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G35970.1); similar to Os03g0586900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050573.1); similar to AAA ATPase; DEAD/DEAH box helicase, N-terminal [Medicago truncatula] (GB:ABE93776.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Putative DNA helicase; (InterPro:IPR004483) -0.569728309356362 -4.69912452357335 0.00135262173954635 1 6.11888941786902 12.8639397344382 -0.569728309356362 0.145782799483269
AT4G03510_at 8.48253139874632 8.5476820082279 7.72501726902502 7.69460641692871 9.03265938810888 8.83134961226852 6.90524725644245 7.44176890098738 7.19292653078528 7.1261971324542 7.85803048319658 7.53949815182632 8.02184041419705 7.77820504072574 7.50896404623654 7.4516107602496 7.34393670304567 7.40784698705088 7.22863862713928 0.148712633754335 0.148893370983937 0.146013543519586 0.158566149685048 0.154480635821528 0.157405158032477 0.156753167251694 0.145282799689016 0.150797300235795 0.156852206814279 0.146288880444071 0.148767726641757 0.150628888295381 0.162720913005173 0.151003620398319 0.150119265912996 0.163134043526652 0.154132319549331 0.152930006586762 4 4 - 1557999 1558464 1558216.545 1557118 1559426 - gene protein_coding_gene FALSE TRUE AT4G03510.1|AT4G03510.2 RMA1 (Ring finger protein with Membrane Anchor 1); protein binding / ubiquitin-protein ligase/ zinc ion binding RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G28270.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G27470.1); similar to ring domain containing protein [Capsicum annuum] (GB:AAR99376.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.453877461835786 4.69755028498914 0.00135547808582887 1 6.11704967725856 15.4807722830630 0.453877461835786 0.0999457015563647
AT3G14790_at 6.34757018879905 6.79324898394415 5.78844250287685 5.88869437672752 5.277814615376 5.58159140156933 6.709334523183 7.21194210547873 6.5062901169875 6.0382767480208 6.90163941714912 7.01220537596669 6.23301101603761 6.65693203192223 6.04767348997835 6.55191434570499 5.67528188343548 6.00717721495924 6.36481696136274 0.200102225553691 0.199504329456619 0.202236989722476 0.207894109569130 0.208639864401661 0.204410657920073 0.202482349754769 0.207768559887435 0.208116501242201 0.198292117741521 0.21526899089558 0.197862154460128 0.207322600896204 0.197697974106477 0.200867013834002 0.195995441463216 0.198987297728582 0.207086478465340 0.210321456333347 3 3 + 4966219 4966846 4966552.818 4964162 4967082 + gene protein_coding_gene FALSE TRUE AT3G14790.1 RHM3 (RHAMNOSE BIOSYNTHESIS 3); catalytic Identical to Probable rhamnose biosynthetic enzyme 3 (EC 4.2.1.-) (EC 1.1.1.-) (RHM3) [Arabidopsis Thaliana] (GB:Q9LH76); similar to MUM4 (MUCILAGE-MODIFIED 4), catalytic [Arabidopsis thaliana] (TAIR:AT1G53500.1); similar to RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1), UDP-glucose 4,6-dehydratase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G78570.1); similar to UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase (ISS) [Ostreococcus tauri] (GB:CAL58329.1); similar to rhamnose biosynthetic enzyme 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95280.1); similar to Os03g0278200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049724.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-glucose 4,6-dehydratase; (InterPro:IPR005888) -0.524393410721635 -4.69530516486334 0.00135956299093912 1 6.11442513046106 12.5442584817533 -0.524393410721635 0.128757175761119
AT3G16180_at 6.75692007990979 7.06725549659384 5.21054994360967 4.9779062424186 6.64820649693048 6.30206600270501 3.99587598894337 4.62235843169828 5.62406138225839 4.4825894923394 6.46569174500439 6.64930923897525 5.49953244929893 5.9730587659789 6.71205391575322 6.16890087358226 3.91124709034062 6.23253340133283 4.93418658499952 0.24696156656831 0.242985084631316 0.251788571830312 0.265507436046707 0.24727296934872 0.245834174474164 0.257969228166008 0.25495912998628 0.250391256753293 0.258986550476943 0.248506553185541 0.250123390489662 0.242392704776436 0.249215409743078 0.242622743362396 0.247027990476431 0.263068354121046 0.247586769926939 0.243976066251641 3 3 - 5481548 5482046 5481755.364 5481331 5485100 - gene protein_coding_gene FALSE TRUE AT3G16180.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G52190.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32296.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABD32298.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.556004060315245 4.69403653508844 0.00136187709640562 1 6.11294169723901 11.180219046134 0.556004060315245 0.140880171607366
AT2G32390_at 6.22605533806134 6.04161287671656 5.49819302415697 4.84505462713216 5.41867001934161 5.07559723075585 5.7642298232936 5.89427193450991 5.27346180297398 5.55942295523055 4.89851422369468 4.89326335430044 4.79004793164139 5.30234484743618 4.27802114777141 4.89672165538692 5.33441752578397 4.74782338928381 4.74800655828783 0.197823310853446 0.196351450914640 0.20102302873134 0.200688591382494 0.200214968154598 0.197647035225114 0.201934506167418 0.201226103930784 0.211110551740804 0.194921941045134 0.193016485309185 0.193273485652080 0.194811193213441 0.204899916731961 0.206917792777324 0.198009689711758 0.197284086115563 0.199637905360916 0.196594010309824 2 2|0 -|/ 13755710 13756185 13755946 13755545 13759000 - gene protein_coding_gene FALSE TRUE AT2G32390.1|AT2G32390.2 ATGLR3.5 (GLUTAMATE RECEPTOR 6) Encodes a ionotropic glutamate receptor ortholog, a member of a putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GLR3.5) [Arabidopsis Thaliana] (GB:Q9SW97;GB:Q9ZV67); similar to ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) [Arabidopsis thaliana] (TAIR:AT1G05200.2); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to putative ionotropic glutamate receptor ortholog GLR6 [Oryza sativa (japonica cultivar-group)] (GB:BAD45488.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10393.1); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320)|Identical to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GLR3.5) [Arabidopsis Thaliana] (GB:Q9SW97;GB:Q9ZV67); similar to ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) [Arabidopsis thaliana] (TAIR:AT1G05200.2); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to GLUR2 (Glutamate receptor 2) [Arabidopsis thaliana] (TAIR:AT4G35290.1); similar to putative ionotropic glutamate receptor ortholog GLR6 [Oryza sativa (japonica cultivar-group)] (GB:BAD45488.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10393.1); contains InterPro domain GPCR, family 3, metabotropic glutamate receptor-like; (InterPro:IPR000337); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.536574973608569 -4.69392337137781 0.00136208372496644 1 6.11280935855315 10.6385979583676 -0.536574973608569 0.13351239385339
AT1G04960_at 6.99445978101804 7.28936099947544 7.89930851451896 7.78491033386633 8.26775654345554 7.7690329763546 7.75996195232126 7.357457278259 7.25513657292204 7.11464689309224 7.97882131272057 7.34350888157509 7.52451305471623 7.76497745337566 6.9485686266982 7.90863420387226 7.56571617082626 7.66859470665947 7.06802206826501 0.171452943637804 0.171833559015404 0.178799922105477 0.170157197385863 0.171513621881718 0.172467405213434 0.166870533745206 0.178418935521974 0.175286316834873 0.174315824258138 0.169788902915681 0.165111657854498 0.166717907265002 0.168870091548432 0.17979038980294 0.162437151579721 0.169887201969331 0.174532871836679 0.164593508579772 1 1|0 -|/ 1408024 1409553 1408693.556 1407800 1410867 - gene protein_coding_gene FALSE TRUE AT1G04960.1|AT1G04960.2 similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT1G27000.1); similar to unknown [Striga asiatica] (GB:ABD98037.1); similar to Os05g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054821.1); contains InterPro domain Protein of unknown function DUF1664; (InterPro:IPR012458) 0.510961856246395 4.69123175990758 0.00136700841459609 1 6.10966098355887 15.0072070371079 0.510961856246395 0.12368129549237
AT1G35780_at 5.08364647257324 5.45927021067899 4.35423986032218 4.13767700124305 4.62564899268183 5.10577532723667 5.64751886413094 5.74200847941658 6.0275974019 5.5564597921487 5.94706284844422 6.42231398360759 5.53292627873609 5.53864006787262 6.06212728836342 5.93505936968915 5.33366409241317 5.9189547580849 6.04968096834813 0.219675534836222 0.215402421661854 0.222344124834639 0.224837311746838 0.228199005801452 0.216861262198519 0.215691735713462 0.220401196738641 0.218113101232454 0.220694133275231 0.218757545241405 0.211730141562270 0.222504708083615 0.220651554367445 0.215044334012504 0.21763575181685 0.221671257244161 0.213124289820693 0.215135266960931 1 1|0 -|/ 13279027 13279695 13279292.667 13278486 13281501 - gene protein_coding_gene FALSE TRUE AT1G35780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78150.2); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os07g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060324.1); similar to Os03g0387800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050261.1) -0.484422423113276 -4.68867170193376 0.00137171027761945 1 6.10666526736311 10.8766013043856 -0.484422423113276 0.113141525778949
AT1G06690_at 8.46688577052347 8.68863646147079 8.06877115787072 8.21702109508862 8.25846030452729 7.67170659965051 9.38194789461174 9.18615831731593 8.61460749993592 8.93495350213638 8.3961376422341 8.67614391498383 8.36081836731983 8.71276715279395 8.54242155602057 9.1469196094313 8.77421256986592 8.65718886189594 8.75157538084122 0.134713232770668 0.130969897239636 0.14761781640614 0.132506465432978 0.128606569409111 0.150443187090123 0.133254948169555 0.131711384528569 0.133841812093802 0.134997788639082 0.13084459950875 0.127340809629831 0.134859260699130 0.132059731127192 0.139345371073816 0.127340809629831 0.131190388970864 0.144011504832729 0.142174828573977 1 1|0 -|/ 2049772 2050962 2050414.625 2049601 2052153 - gene protein_coding_gene FALSE TRUE AT1G06690.1 aldo/keto reductase family protein similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT5G53580.1); similar to Os07g0143000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058875.1); similar to aldo/keto reductase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19952.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.492818286674598 -4.68820575096659 0.00137256793372901 1 6.10611989526789 17.2051342852771 -0.492818286674598 0.116573208156798
AT1G72900_at 5.51930799836047 5.91866558440664 8.55964724464595 8.84566929877916 6.38740535082575 5.81956570983446 5.18224001930922 4.15331123950251 5.49311860518086 5.38392658505142 4.92829613302523 4.44555214227299 4.19902703300421 4.48946223465701 3.94658569782725 5.6373453938733 4.72130614130296 4.63925413049001 4.94659561967464 0.236894922397548 0.238788375824520 0.243092981356366 0.240877710804258 0.237504161844858 0.244175473089243 0.234246404956255 0.234246404956255 0.237188566243182 0.239258842697091 0.240995974736073 0.241149161355464 0.240179932326487 0.242870465994804 0.239912524436178 0.234246404956255 0.238705110216371 0.239515963215907 0.234246404956255 1 1 + 27436750 27437165 27436959.455 27435856 27437443 + gene protein_coding_gene FALSE TRUE AT1G72900.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72940.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.780498683648801 4.68806588765733 0.00137282548730237 1 6.10595618463847 11.2484268306791 0.780498683648801 0.220427856743499
AT3G16830_at 7.78264650077887 7.89613657713915 7.59511101556338 7.7410033917372 8.08841290488167 7.67314350645894 7.34376799596756 7.41343786199945 7.40754361781178 6.648020166347 5.49216178715585 6.08829986734675 6.47837451481773 6.08573688311038 6.24449753021744 6.6485358188706 6.31151433040501 5.66943798871832 7.27362216464384 0.227711087993382 0.231992600017802 0.227336183805253 0.227723136778511 0.238472848083242 0.235582803509926 0.244334336452014 0.230233232236158 0.238555933356455 0.230089080453004 0.229271087687826 0.228403005969629 0.232301087782215 0.237468515377235 0.232900638583350 0.225560554993932 0.248341476056664 0.227177640666192 0.233134614403867 3 3|0 +|/ 5736829 5737479 5737154.1 5731540 5737778 + gene protein_coding_gene FALSE TRUE AT3G16830.1 TPR2 (TOPLESS-RELATED 2) similar to TPR3 (TOPLESS-RELATED 3) [Arabidopsis thaliana] (TAIR:AT5G27030.1); similar to TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G15750.4); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABD28351.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE85670.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.408494169415787 -4.68752138984803 0.00137382865951845 1 6.10531881372555 14.3102317141563 -0.408494169415787 0.0795801512743143
AT3G10810_at 7.15295014377967 7.21354339459337 7.09084945491099 7.1385930566523 8.06889260999311 7.65562142842584 7.32665756614366 6.85435014316416 5.5144067921058 6.50694537132332 6.46169907472126 6.67431712661381 6.83614638799166 6.33396294328132 6.65220069972707 7.35524980444364 7.49488372636789 6.7685011112163 6.64977439294959 0.198705815310623 0.208154423484301 0.199626176357305 0.202869355092700 0.200838993968685 0.209386183558561 0.198705815310623 0.223539654029086 0.261930403847513 0.202453242787167 0.205742685648611 0.203482049661991 0.212043976017602 0.204180979660814 0.21750335684215 0.201480575707872 0.209485529759754 0.202307188628672 0.213966805053854 3 3 - 3381867 3382513 3382156.636 3381853 3384510 - gene protein_coding_gene FALSE TRUE AT3G10810.1 zinc finger (C3HC4-type RING finger) family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G56590.1); similar to putative RING zinc finger protein-related [Medicago truncatula] (GB:ABD32886.1) 0.475012541372238 4.68486199114112 0.00137873968715062 1 6.10220503797644 13.8355967054187 0.475012541372238 0.109424526833972
AT4G16690_at 6.15131558369998 6.33975614501031 7.25645547164563 7.09116878861291 6.81123870120613 5.99469882454854 7.35765200995308 7.38881329155025 6.51596144813488 6.63412399079377 4.87906171131953 4.7625300411478 5.55733310615563 5.08341513585567 3.81166958792159 6.26961209150587 5.6967750054218 5.34755686487857 5.75407669898576 0.21113297248778 0.214462346201035 0.226873418203077 0.218863186230576 0.212387128567879 0.218663943574252 0.216683015983590 0.218256339959717 0.220407309151096 0.21113297248778 0.221607205862157 0.222242491792495 0.217480121880076 0.231882971000126 0.229506265512705 0.21113297248778 0.238790762934682 0.216197551557254 0.219299636349014 4 4|0 -|/ 9392427 9393146 9392657.667 9392169 9393551 - gene protein_coding_gene FALSE TRUE AT4G16690.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G58310.1); similar to hypothetical protein [Capsella rubella] (GB:CAC82615.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.573193498664546 -4.68052077695426 0.00138679730162658 1 6.09711934091978 12.5375781381937 -0.573193498664546 0.147912436937851
AT3G02690_at 8.40094535742978 8.74765789023625 8.63435590358196 8.49455625765266 9.17723720609728 8.93405474527511 9.5301288004954 9.48002979835715 9.30463017936805 9.2441733426126 8.83582563310139 8.64586831093779 8.80041582519088 8.61619026521746 8.53153863618386 9.200658374641 8.83868169437335 8.82002536208694 9.54462213835297 0.138143898335628 0.130440130233815 0.142190889973047 0.138951714871088 0.131249774679516 0.146453048046314 0.138297139138833 0.134906493564057 0.141902801764232 0.14130885875153 0.133198922820092 0.132053874952513 0.135352047586642 0.138979830934221 0.137928357761328 0.134201088327844 0.145077535439141 0.146413096997176 0.138370938515091 3 3|0 +|/ 580485 581396 580980.6 579593 581618 + gene protein_coding_gene FALSE TRUE AT3G02690.1 integral membrane family protein similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92827.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.403982070436258 -4.68019317846094 0.00138740741134131 1 6.09673542326628 18.0001836113046 -0.403982070436258 0.0776630193687506
AT3G05250_at 5.73154352642449 5.70151943799283 6.36863206812981 5.93843001454204 6.58654795293771 6.25687770704455 5.34773128536994 5.15844526837224 5.57605194561355 4.81669909899506 5.50419345187538 5.51847077092415 5.43898796949919 5.40853102193337 4.65219923375075 5.48655643784335 5.66037456491455 5.6502952652419 5.55433276685033 0.226036301301287 0.223329852123356 0.223329852123356 0.230111371600698 0.231855992662946 0.236771382072737 0.235150810581598 0.230071131453203 0.240579483525035 0.230515119664767 0.225065654915882 0.230574189696725 0.228059556547199 0.22643284674076 0.234772270590231 0.223329852123356 0.24562856299781 0.233226481686240 0.236332554428317 3 3 + 1496227 1497352 1496769.1 1495603 1497475 + gene protein_coding_gene FALSE TRUE AT3G05250.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G67180.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE90136.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.451034270900921 4.67908663747354 0.00138947034698026 1 6.09543850717198 11.2515387542604 0.451034270900921 0.0994856509313898
AT1G73180_at 6.3031044738272 6.25510526772826 5.65728657248458 5.3348353611342 6.01915376681303 5.47710587272745 5.8706911454798 5.93622830618918 5.24732776464854 5.62240784330509 5.20030357802382 5.71245212251034 5.2098009697533 4.87145808107532 5.65693937697364 5.14360253779743 5.71129737161618 5.29521480468012 6.62857182297856 0.225238116199721 0.228562445164015 0.218701633520954 0.220183707262440 0.221243577954604 0.219431668374974 0.218823460183905 0.219717808378334 0.228164965132983 0.216289189468915 0.218362375185520 0.215364803316563 0.216657250995074 0.222926256405571 0.218276887947364 0.214914609199475 0.218256696549814 0.229407787146632 0.223465741054678 1 1|0 +|/ 27523569 27525067 27524190.222 27521577 27525310 + gene protein_coding_gene FALSE TRUE AT1G73180.1 eukaryotic translation initiation factor-related similar to TIF3B1 (EUKARYOTIC TRANSLATION INITIATION FACTOR 3B), nucleic acid binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G27640.2); similar to putative eukaryotic translation initiation factor 2A [Oryza sativa (japonica cultivar-group)] (GB:BAD19332.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Translation initiation factor eIF-2A; (InterPro:IPR011387) -0.475911221678295 -4.67891225894829 0.00138979574502233 1 6.09523410739879 11.4481402202719 -0.475911221678295 0.110048309510683
AT1G55020_at 5.37856032440033 5.72763728742947 5.81983312240724 5.6418046681549 4.78055038065537 5.27486099159328 8.33726090283862 8.65466153705751 7.23171663097597 8.09881193409007 7.62445248636191 8.40679843578343 8.2664591027731 8.10111979006137 7.39099937145083 8.61274660809118 7.838309781151 8.51476947879521 7.05204940549389 0.265442068243788 0.246644107512504 0.248538834823396 0.246371701693485 0.264541961239563 0.264577606567942 0.244960689338039 0.24262992272074 0.241561099956455 0.235057571380837 0.235057571380837 0.235057571380837 0.235057571380837 0.239348195525182 0.241216924154696 0.235057571380837 0.242705828515614 0.235057571380837 0.237127446747633 1 1 + 20533243 20533770 20533456.273 20529375 20533940 + gene protein_coding_gene FALSE TRUE AT1G55020.1 LOX1 (Lipoxygenase 1); lipoxygenase lipoxygenase, a defense gene conferring resistance Xanthomonas campestris Identical to Lipoxygenase 1 (EC 1.13.11.12) (LOX1) [Arabidopsis Thaliana] (GB:Q06327); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT3G22400.1); similar to lipoxygenase 1 [Brassica napus] (GB:AAO03558.1); similar to bacterial-induced lipoxygenase [Gossypium hirsutum] (GB:AAK50778.3); similar to lipoxygenase [Corylus avellana] (GB:CAD10740.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.505835081970128 -4.67846766017292 0.00139062575888412 1 6.09471294093096 13.9795542544813 -0.505835081970128 0.122200979566463
AT2G16365_at 9.50412649236583 9.48710939518375 9.19144000252106 9.19243159399356 9.87920682229514 9.28831016617177 8.5239685487092 8.40217856303502 7.04676270419457 8.32280044362285 7.99792123815921 8.19351133516781 8.47465536479934 8.48992870870477 7.8821085536726 8.56045640170123 8.64302726819065 8.25406589166139 8.01672826676818 0.128293449310011 0.127177324030253 0.12324035278729 0.12324035278729 0.12324035278729 0.129125072376857 0.125417749612644 0.124151764552336 0.154095624283192 0.13562006911975 0.129253690952144 0.128687122873530 0.127952096520840 0.130007899042355 0.134815847593534 0.125194342815712 0.130864455459130 0.133080548492853 0.130503329968307 2 2 + 7082875 7083427 7083165.182 7081444 7086601 + gene protein_coding_gene FALSE TRUE AT2G16365.1|AT2G16365.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G16300.1); similar to hypothetical protein MtrDRAFT_AC149636g17v1 [Medicago truncatula] (GB:ABE85950.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G34550.1); similar to hypothetical protein MtrDRAFT_AC149636g17v1 [Medicago truncatula] (GB:ABE85950.1) 0.462515135075262 4.67838264625829 0.00139078453093795 1 6.09461328204948 17.2372913564272 0.462515135075262 0.104448521664361
AT2G03350_at 7.31200176875657 7.18055288005675 6.80890219779945 6.82425105980226 7.27286975561343 7.32987689151692 8.43477983605645 8.49813915089995 8.69151253636564 8.58241407288318 9.49764255151646 9.07966050669204 8.67452841727427 8.99595273124076 9.14624820510218 8.42735749783875 7.82183446825276 8.6423792222948 8.65910786345867 0.202354261969086 0.205542168558245 0.22167527199642 0.211615277614395 0.215221937524245 0.217105186013512 0.206349883250713 0.204346551183788 0.197948270191944 0.200030990219686 0.195973554413039 0.195531045175084 0.198526844640261 0.199467748360115 0.195166771753117 0.192808800226698 0.207445406704504 0.193047016945515 0.204766306724799 2 0|2 /|- 1019748 1020081 1019934.444 1019576 1021183 - gene protein_coding_gene FALSE TRUE AT2G03350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08890.2); similar to cp protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF94591.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.328018903484371 -4.67091413922127 0.00140480950254200 1 6.08585309370395 16.1726943296939 -0.328018903484371 0.0272409227812206
AT2G36170_at 9.46111488085391 9.7190013816576 9.05362278813791 9.27451940147388 9.3653264569049 9.20234915864607 9.68261746561063 9.7488953054258 9.41440505790356 9.27933481246043 8.97528613089758 9.4192633754106 8.88420863025241 8.77588558470575 9.61162375143964 8.8175924885058 8.74154488984103 8.57844676973882 9.23340455623509 0.120334933504053 0.120624263559914 0.121594604096104 0.121846830540669 0.118437462267087 0.117568335815265 0.124300446173311 0.119539294963286 0.121394630917996 0.120045219427976 0.116415318842378 0.115655382658061 0.122790385481092 0.117724276091356 0.125258277581223 0.123820594953706 0.125024458231617 0.127728483057631 0.122372696648360 2 2|0 +|/ 15179246 15179980 15179621.889 15179173 15180359 + gene protein_coding_gene FALSE TRUE AT2G36170.1 ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 60S ribosomal protein L40 (CEP52) (UBQ2) [Arabidopsis Thaliana] (GB:P19232;GB:Q9S7X3); similar to UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT3G52590.1); similar to ubiquitin fusion protein [Arachis hypogaea] (GB:AAZ20285.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein L40e; (InterPro:IPR001975) -0.381259748348513 -4.67032697036829 0.00140591860104809 1 6.08516394490113 18.5806956522382 -0.381259748348513 0.0661818399000498
AT4G30390_at 6.96412512033048 7.13209732390395 7.17869436574823 7.43105069201514 7.6515328850346 7.10034825345583 6.48108594620636 6.23092608152822 5.90655910731577 5.70257324139318 6.0952426303307 5.88450015089035 6.11778643111081 6.45235278251322 5.66588067407855 6.76944156888135 6.0270583201894 6.08913529642223 5.76588657519683 0.235922077124848 0.236688265705139 0.23984617523116 0.239435444692511 0.237166330938216 0.252338378181696 0.245151399563927 0.246316326518894 0.258865953246455 0.247339630961870 0.241623373673764 0.235922077124848 0.253892899397772 0.237186589810598 0.254832928307722 0.235922077124848 0.253850970695625 0.245957108386127 0.235922077124848 4 4|0 -|/ 14862230 14862839 14862487.25 14862015 14863191 - gene protein_coding_gene FALSE TRUE AT4G30390.1 unknown protein 0.492174844119005 4.66849268788482 0.00140938946420199 1 6.0830106800933 12.9859064367465 0.492174844119005 0.117152106593995
AT3G15640_at 8.2082323534762 8.12407155386717 8.12979469515954 8.31232382278378 7.57325512435362 7.8021763455359 7.08917984602196 7.98850392769633 7.80036896835308 7.22501440054108 8.94030796965254 8.93565034403328 8.10294255593548 8.94986985732313 9.1666384879628 8.44000381990343 8.07271047037557 8.28094069567362 7.41524190963829 0.173307151681029 0.168598032610696 0.180368543033610 0.176652019258190 0.173219124653969 0.177827718517759 0.18503019348611 0.170189295773549 0.184318053099042 0.17985015883739 0.173672539808648 0.177037994561388 0.170915118319873 0.173383026710013 0.181329484637959 0.174890527412496 0.176688789363157 0.173279160177778 0.186450997022541 3 3|0 +|/ 5299283 5301311 5300467.778 5299117 5301752 + gene protein_coding_gene FALSE TRUE AT3G15640.1|AT3G15640.2 cytochrome c oxidase family protein similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT1G80230.1); similar to cytochrome c oxidase family protein-like [Solanum tuberosum] (GB:ABB87114.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) 0.616407587811399 4.66802760738973 0.00141027096938065 1 6.08246462499406 15.9491129342543 0.616407587811399 0.164318902801782
AT1G09900_at 5.47047449287907 6.09766597139267 5.17464548716693 5.17342108556377 6.08599295014836 6.01346741611713 6.53017466926339 6.04596505364755 4.37080039494239 5.05112865848521 3.21722258863605 4.60691133615623 4.11793145490684 3.70505105546163 4.88685205451488 4.22276224236192 4.65915018098368 3.80562810129267 5.02799061022258 0.251319306604685 0.243161021652413 0.241316271781399 0.239371683921303 0.240688069670129 0.247431164964222 0.248924873645601 0.247144203549484 0.262869258394130 0.238801245421150 0.263768056553585 0.238801245421150 0.246032367418288 0.241087901810060 0.247070682058259 0.245621364548989 0.248804345137477 0.245053327875835 0.245042768959714 1 1 + 3219344 3219742 3219563 3218135 3219931 + gene protein_coding_gene FALSE TRUE AT1G09900.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G04760.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15828.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.544069786570392 -4.66407220562931 0.00141779210022004 1 6.07781896782323 10.3086401481087 -0.544069786570392 0.137694274500823
AT3G50000_at 8.97699851495864 8.9866666144555 8.86510640117038 8.99125967187308 9.18674504233966 9.08298187416496 8.45309024537259 8.79395032277357 8.61673991834473 8.47279565418238 9.41779080414237 9.26587770119144 9.00388298809318 9.22212887994594 9.06181470619554 9.03902339722768 9.00159682399411 8.8910973322885 8.6607017265987 0.128269231253110 0.12687985714588 0.129024284905314 0.130138519283077 0.128338549749660 0.128235958566827 0.130233506877535 0.127253614119292 0.137531155695872 0.148910991865492 0.126080418761097 0.12065224091641 0.123355510787029 0.123630893769428 0.130268827201156 0.126499700072075 0.12832136697895 0.133191354076840 0.134396344597836 3 0|3 /|+ 18546642 18547669 18546977.25 18545442 18547953 + gene protein_coding_gene FALSE TRUE AT3G50000.1 CKA2 (casein kinase II alpha chain 2); kinase casein kinase II catalytic subunit alpha Identical to Casein kinase II subunit alpha-2 (EC 2.7.11.1) (CK II) (CKA2) [Arabidopsis Thaliana] (GB:Q08466;GB:Q9SN18); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to casein kinase II alpha chain, putative [Arabidopsis thaliana] (TAIR:AT2G23080.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82533.1); similar to protein kinase CK2 alpha subunit [Nicotiana tabacum] (GB:CAD26882.1); similar to protein kinase CK2 alpha chain [Nicotiana tabacum] (GB:CAD27342.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.379167984544928 4.66116511810665 0.00142334751949387 1 6.07440275713453 17.7652568419769 0.379167984544928 0.0654321737298626
AT4G35860_at 8.35036682262644 8.38002799753055 8.60393449715963 8.60069973284391 8.7031232564622 8.46944711139797 7.9740381954931 8.62640169309137 7.98620715797266 8.0130234513447 8.9028791876132 8.71888648043521 8.90475034854398 9.08296307084224 8.57277589763187 8.86680987880033 8.36925674564382 8.30811568349475 7.94491943151227 0.161200712109595 0.158511475585494 0.162678077113946 0.159115085271394 0.159303233904431 0.162585533844516 0.157404101346593 0.159755815822702 0.165199428410866 0.163825815021050 0.163251599935041 0.155851591994996 0.153635613373388 0.168618283431921 0.159414495878504 0.156459136136088 0.160971471075909 0.176464361446920 0.163586598582725 4 4|0 -|/ 16987132 16988653 16987859.778 16986843 16989050 - gene protein_coding_gene FALSE TRUE AT4G35860.1|AT4G35860.2 ATGB2 (GTP-BINDING 2); GTP binding|ATGB2 (GTP-BINDING 2) GTP-binding protein ATGB2 similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)|similar to AT-RAB2 (Arabidopsis Rab GTPase homolog B1c), GTP binding [Arabidopsis thaliana] (TAIR:AT4G17170.1); similar to small GTP-binding protein [Carica papaya] (GB:BAA88497.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.498006893481512 4.65621809247692 0.00143285540526168 1 6.06858582824121 16.8120989176101 0.498006893481512 0.120029712161755
AT3G59280_at 8.4339988309886 8.83482689725759 9.00717203136559 9.0995596397595 9.21513196024649 9.07160459637102 8.85257058734225 9.03303184475354 7.76097761099097 8.20632760048717 8.46571202445453 8.52915818030888 8.5929183555283 8.43704850809726 8.58651186217953 8.8540695183416 8.45397870928386 8.42396262714176 8.13161310878554 0.18843423112466 0.175937712428398 0.183258874999725 0.182767643366694 0.181828805140474 0.183767573779387 0.187374759264795 0.177513370656631 0.191115382575004 0.184755249868873 0.192062029155999 0.178456753852635 0.197177704742622 0.187817718458735 0.185939261655421 0.179165832083291 0.192333043434167 0.182556437386427 0.180790341867358 3 0|3 /|- 21920247 21920888 21920513.625 21919890 21921699 - gene protein_coding_gene FALSE TRUE AT3G59280.1 TXR1 (THAXTOMIN A RESISTANT 1) mutant exhibited resistance to growth on media containing thaxtomin due to a difference in the rate of uptake of the toxin.We proposed that TXR1 is a component of, or regulator of, a dispensable transport mechanism. similar to signaling molecule-related [Arabidopsis thaliana] (TAIR:AT5G61880.2); similar to magmas-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87219.1); similar to Os10g0479600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064869.1); contains InterPro domain Protein Transporter, Pam16; (InterPro:IPR005341) 0.409853608297950 4.65571957979208 0.00143381731720752 1 6.06799940916047 17.2314334218047 0.409853608297950 0.0816049498850336
AT4G25020_at 4.58618971309151 4.57485415428185 5.54155607402326 5.64565026114951 4.72704858376063 4.99383136854372 4.95777655331487 5.00873547136797 4.34405613947556 4.47343075546574 4.47583716418444 4.53662046732220 4.84539268826104 4.51132521006267 4.66984513499861 5.10727314258522 4.96478329922575 4.76766322582116 4.59758387143834 0.181679573586839 0.182157972527950 0.186876321790458 0.181122613078357 0.184452208735145 0.181768381371994 0.184319829601158 0.181403054761526 0.190319583588337 0.185871600628858 0.184266796048382 0.182266899593948 0.184136133008923 0.183583577260273 0.187399288372028 0.187756523272013 0.181122613078357 0.185530692708328 0.181122613078357 4 4 - 12860829 12861336 12861014.818 12860644 12861985 - gene protein_coding_gene FALSE TRUE AT4G25020.1 KOW domain-containing protein / D111/G-patch domain-containing protein similar to MOS2 (MODIFIER OF SNC1, 2), RNA binding / nucleic acid binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G33520.1); similar to Os03g0253500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049580.1); similar to G-patch domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95011.1); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain D111/G-patch; (InterPro:IPR000467) 0.354142442476496 4.65543325692792 0.00143437011092839 1 6.06766257651701 9.60772167095042 0.354142442476496 0.0503746521683815
AT2G25760_at 7.41228064648375 7.0497192088309 7.40417356452766 7.25836541997327 8.12233236420112 7.62846474284824 7.12179097076884 6.80379501967097 6.27556626102744 6.18110424366737 6.46625357850463 6.46803533706983 6.93758726607604 6.83461632396392 6.54644742577111 6.99115163876463 7.18827594906779 6.34153835384824 6.21022647671972 0.159034841571147 0.158177240987365 0.160230337329602 0.160112506778539 0.158992079403839 0.159419482359818 0.160643697831006 0.160405867537039 0.164987540483984 0.163380645288819 0.158974878588345 0.158743695427048 0.156623308899408 0.158395952610785 0.161788566436051 0.156623308899408 0.165363915611803 0.158939007953335 0.163757863353141 2 2|0 -|/ 10992353 10994298 10993292 10991886 10996002 - gene protein_coding_gene FALSE TRUE AT2G25760.1|AT2G25760.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G13670.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G18190.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G03940.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD87518.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABE93337.1); similar to putative casein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT44311.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.502938400888693 4.65422522550623 0.00143670495313051 1 6.06624127447969 13.8221338561322 0.502938400888693 0.122090950019160
AT1G15060_at 6.74591022327667 6.53311486083296 7.0682425648889 7.12184537752649 7.439507501949 7.3737280317639 7.73400122127671 7.89046353859247 7.19754232636612 6.55089345064641 6.92686713114088 7.3153557100104 7.75017811950724 7.70098123784335 7.27825593557324 7.76101033045256 7.77122760543065 7.39616117723236 6.68536356851083 0.203265999484752 0.189702570679858 0.191655607389003 0.187454817854568 0.190101834579921 0.197373752393125 0.187175267387648 0.184897088104475 0.203382806869876 0.192781369183666 0.182240658472539 0.183829087726319 0.18651138266176 0.181404631813649 0.183462445812936 0.184636303396157 0.192230078385337 0.194855256890763 0.184697649530082 1 0|1 /|- 5184612 5185453 5185085.857 5183602 5186969 - gene protein_coding_gene FALSE TRUE AT1G15060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73750.1); similar to Os01g0692600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043943.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82496.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.350598307714208 4.65362572833117 0.00143786516572464 1 6.06553584149292 14.3877372172167 0.350598307714208 0.0480090328207515
AT4G13670_at 9.90862907422872 9.7514623238325 9.51095428998366 9.32506686339413 9.49899921160112 9.42176229043885 9.74883770270435 9.81392650283962 9.94551407931913 10.1364030698008 9.51020621778401 9.97383272987302 9.57830888500482 9.79238297118495 9.62012859621172 10.0783265416173 9.76288460322924 9.78689288489063 10.1890070605626 0.114386858790520 0.120501584372304 0.120178534761416 0.119986316268203 0.121324125848638 0.119963906510397 0.114216563332847 0.114985612381535 0.127907917346346 0.114805670433466 0.129774730915894 0.119533570931196 0.115604269628624 0.114216563332847 0.124753689169098 0.114216563332847 0.121076146193126 0.114216563332847 0.116736546913817 4 4|0 +|/ 7950148 7950737 7950461 7948575 7950899 + gene protein_coding_gene FALSE TRUE AT4G13670.1 PTAC5 (PLASTID TRANSCRIPTIONALLY ACTIVE5) similar to Os04g0514400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053306.1); similar to COG3409: Putative peptidoglycan-binding domain-containing protein [Nostoc punctiforme PCC 73102] (GB:ZP_00111736.2); contains InterPro domain Peptidoglycan-binding domain 1; (InterPro:IPR002477); contains InterPro domain Peptidoglycan binding-like; (InterPro:IPR009070) -0.346977939108295 -4.64962101390366 0.00144564155101436 1 6.06082179157237 19.5490440316872 -0.346977939108295 0.0456082329895965
AT2G21280_at 8.5302919250059 8.36418083027811 7.90884773365571 7.84996303146518 8.1599137966327 8.03147169180506 9.09546923391008 8.832229602376 9.0622376623179 9.20973973569772 8.89642993391715 9.14525912602983 8.6408421856351 8.8985768872723 9.34637984221921 9.19939147297654 8.96617310607715 8.90962746307716 8.7779461483565 0.133746860226304 0.130466722322335 0.133327378717161 0.127978039130047 0.131356232048088 0.145638241540334 0.127186541679287 0.128344910033851 0.135418662779793 0.130600113404291 0.129428132296218 0.125883576593503 0.135636290954705 0.125479010309431 0.132625497113865 0.12857409876545 0.132676327847753 0.134293422617011 0.127398391437963 2 2|0 -|/ 9117672 9118667 9118112.778 9117394 9119788 - gene protein_coding_gene FALSE TRUE AT2G21280.1 GC1 (GIANT CHLOROPLAST 1); catalytic/ coenzyme binding A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. similar to terpene cyclase/mutase-related [Arabidopsis thaliana] (TAIR:AT4G33360.1); similar to Conserved hypothetical protein, YfcH [Medicago truncatula] (GB:ABE79938.1); similar to Os02g0834700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048641.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Domain of unknown function DUF1731; (InterPro:IPR013549); contains InterPro domain Conserved hypothetical protein, YfcH; (InterPro:IPR010099) -0.367150007238171 -4.64603631265706 0.00145264091135681 1 6.05659968381609 17.3550340727784 -0.367150007238171 0.0591565497050546
AT3G12490_at 10.6101018840481 10.5636879963459 10.5095359998128 10.4954480683045 10.4443206117867 10.6366356493878 9.82412836855135 10.0009799346381 9.52727394277807 9.73120277617589 10.0621849989711 9.94140252271464 10.0496349837480 10.1537716117366 9.99077613400548 9.90071566793704 10.0596319168763 10.0260061758765 9.54351895590974 0.0765709808970961 0.0709509833968838 0.0740609262410562 0.0703823490995807 0.0703823490995807 0.0708538060565394 0.0716796250384018 0.0716131048644402 0.075622153963106 0.0745021757932885 0.0755440946357547 0.071537644494055 0.072170998473537 0.0720027402571677 0.0723298274818734 0.0721647860035897 0.072088638563072 0.0716362090561716 0.0740681019429658 3 3|0 -|/ 3960540 3961752 3961268.4 3960408 3961922 - gene protein_coding_gene FALSE TRUE AT3G12490.1|AT3G12490.2 cysteine protease inhibitor, putative / cystatin, putative similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G05110.1); similar to At3g12490-like protein [Boechera stricta] (GB:ABB89766.1); similar to cysteine proteinase inhibitor [Brassica rapa] (GB:ABK78689.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243)|similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G05110.1); similar to At3g12490-like protein [Boechera stricta] (GB:ABB89766.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.347055406477869 4.64378618571475 0.0014570531325951 1 6.05394826509242 20.1974451773283 0.347055406477869 0.0459864136513688
AT4G32770_at 7.58745511450428 7.85515502824767 7.86704358440885 8.1735807959345 7.59455302015634 7.36820680585027 9.65150541262092 9.79004795792884 8.87318437360912 9.48538359923974 9.31840830960282 9.1629692606678 9.34184303022187 9.45798411686208 8.93197914734143 9.7683102924122 9.20578112534352 9.32012066633744 9.15460681102893 0.144412196694316 0.140341738789665 0.141244030494428 0.135540897003525 0.148827450923228 0.153293075829769 0.134242040249661 0.138234531146520 0.141301844424071 0.139628098717578 0.138099952015970 0.134590799926127 0.138592014950562 0.139551257862087 0.135799284179131 0.138467372184312 0.143472769495061 0.140864456064810 0.139489686384111 4 4 + 15806984 15807771 15807521.182 15804919 15807987 + gene protein_coding_gene FALSE TRUE AT4G32770.1 VTE1 (VITAMIN E DEFICIENT 1) Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading. Identical to Tocopherol cyclase, chloroplast precursor (Vitamin E pathway gene 1 protein) (Sucrose export defective 1) (VTE1) [Arabidopsis Thaliana] (GB:Q94FY7;GB:O65524); similar to tocopherol cyclase [Helianthus annuus] (GB:ABB52813.1); similar to tocopherol cyclase [Helianthus annuus] (GB:ABB52812.1); similar to tocopherol cyclase [Eucalyptus gunnii] (GB:AAP97931.1) -0.41391429721594 -4.64371287164336 0.00145719713584521 1 6.0538618606164 17.4781848424021 -0.41391429721594 0.0840794506110443
AT4G24930_at 7.55692092483954 7.64680953561973 6.52446478860415 6.20437394631286 7.14994797973401 6.59817917266113 9.13239108432983 9.26155534633052 8.78678265510904 8.82861507473472 9.8135309130028 9.9589971316956 9.33177378269518 9.70005511709312 9.79716857449943 9.76007930239444 8.90400879450234 9.34040077527253 8.65778038364058 0.212080497184628 0.200723427796819 0.231712818041356 0.228057686116111 0.206035455924632 0.227246625263386 0.197956779561144 0.196851005845654 0.216188506114584 0.203502834187833 0.199992281156969 0.196546908989747 0.200103490111032 0.196385299575808 0.200481803724325 0.196385299575808 0.201960352253045 0.202051268776369 0.203924014394926 4 4|0 -|/ 12821511 12822241 12821765 12821233 12823752 - gene protein_coding_gene FALSE TRUE AT4G24930.1 thylakoid lumenal 17.9 kDa protein, chloroplast Identical to Thylakoid lumenal 17.9 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SW33); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54257.1); similar to Os01g0102300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041747.1) -0.481075994942773 -4.64318550595355 0.00145823343906138 1 6.05324030379879 16.6760692656652 -0.481075994942773 0.113699723620060
AT4G12880_at 6.62598696209548 7.22586185237506 5.09720549549623 5.51493624872601 6.16053469118908 6.24848700888259 9.29563998081553 9.45330670590092 7.46090161320999 8.18514510065992 9.67781768641851 9.93527249497844 9.41875802149135 9.33407586651283 9.72451707364803 8.89077462987424 8.14077231754683 9.38944613091128 8.24578183145566 0.269037639907361 0.259024714511009 0.269740830489154 0.271346286214580 0.263429115735104 0.27172246002116 0.258076541033897 0.272566898201148 0.260430874731832 0.256446042335209 0.258807276891562 0.271965551861479 0.262028792181663 0.275864398868542 0.257749639502423 0.256446042335209 0.265745996429108 0.271449480950798 0.256446042335209 4 4|0 -|/ 7544637 7545192 7544924.9 7544379 7545325 - gene protein_coding_gene FALSE TRUE AT4G12880.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G15350.1); similar to lamin [Brassica oleracea] (GB:CAA65749.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.522460792496216 -4.64265259980126 0.00145928143864034 1 6.05261216574647 15.5916809312424 -0.522460792496216 0.130302608882607
AT1G10720_at 5.71422223740023 6.08964833224411 6.3659616854509 6.22521206340178 6.93504122481465 6.27732546496664 5.99651031864803 5.33978247292918 5.36747350100132 5.32383640801072 5.97078677644559 6.22128249989588 5.73185162089055 5.94979961661784 6.17471951606627 6.13067203215078 5.84873830226655 6.14994891664653 5.51395831130866 0.203278979307857 0.208091030968794 0.206927001834448 0.204227516616296 0.209464536308520 0.215291696577508 0.199573070475555 0.206119532943444 0.218302234440551 0.207429094724505 0.204488131522937 0.201189474323114 0.199592390305577 0.214484808963164 0.204474879457968 0.202704929674053 0.216226694117599 0.203945882596415 0.209202542958709 1 1|0 +|/ 3563757 3564304 3564073.7 3562953 3564760 + gene protein_coding_gene FALSE TRUE AT1G10720.1 BSD domain-containing protein similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49800.1); similar to putative BSD domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38477.1); contains InterPro domain BSD; (InterPro:IPR005607) 0.643156553017685 4.64257080687603 0.00145944236254459 1 6.05251575162782 11.8299534667633 0.643156553017685 0.175173440601959
AT1G20010_at 10.3522137765622 10.2997195963926 9.69131453007173 9.65130212899787 10.5864357571312 10.405652315576 9.76034479642885 9.91338442434048 10.3640423497861 10.0866438894895 11.2519983147364 11.0662881673818 11.0157546198835 11.1358714372042 11.0987085118993 10.6316009857373 10.2562190476771 10.8463027337154 10.2410476677452 0.0957723580742016 0.0957942740841958 0.103020855772626 0.0925663475160056 0.0930420076708463 0.105460174849957 0.0945089041590394 0.101987380064603 0.104399026501874 0.0925074821978318 0.0944738810767298 0.0939267174246536 0.0925074821978318 0.0951538750133181 0.0930418531972899 0.0959932128285094 0.108111109356738 0.0939173646170343 0.0944185995779009 1 1 - 6938093 6938592 6938331.273 6937786 6940573 - gene protein_coding_gene FALSE TRUE AT1G20010.1 TUB5 (tubulin beta-5 chain) beta tubulin Identical to Tubulin beta-5 chain (Beta-5 tubulin) (TUBB5) [Arabidopsis Thaliana] (GB:P29513); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB1 (tubulin beta-1 chain), structural molecule [Arabidopsis thaliana] (TAIR:AT1G75780.1); similar to Tubulin/FtsZ family, GTPase domain, putative [Medicago truncatula] (GB:ABE90057.1); similar to Tubulin beta-3 chain (Beta-3 tubulin) (GB:Q9ZRB0); similar to beta-tubulin [Lycopersicon esculentum] (GB:ABB13293.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.342262771392809 4.64020817247809 0.00146409902663278 1 6.04973025248378 20.6542563888308 0.342262771392809 0.0425518903166946
AT1G51360_at 7.2643281734895 7.38857229864994 7.28829229017416 7.43678488587501 8.2180532209423 7.74135513433299 7.48884416151192 7.29091335668619 5.7863207671565 6.23816762139102 5.95593634472752 6.2439861129286 6.6575520465746 6.76998286040159 6.47685089338883 7.07778013178859 6.76197896139327 6.59385371888989 5.98908737655277 0.210157333106945 0.205534651413813 0.200716462814666 0.217277107140793 0.208170444042849 0.206987053259020 0.200142630862570 0.206090648374664 0.216883245846715 0.209947725529497 0.203688218754725 0.198412540650923 0.209254936015369 0.199231592573782 0.201468710117330 0.200611832240351 0.209330196807894 0.201311779654515 0.20791697320524 1 1 + 19047914 19048204 19048067.818 19047852 19048568 + gene protein_coding_gene FALSE TRUE AT1G51360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31670.1); similar to Hypothetical protein [Oryza sativa] (GB:AAK55783.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097); contains InterPro domain Dimeric alpha-beta barrel; (InterPro:IPR011008) 0.437835881987456 4.63776639433118 0.00146892855623507 1 6.04685038128823 13.8005256346053 0.437835881987456 0.0954007407548464
AT2G24280_at 7.86019775387995 7.97236082669088 8.28950336118333 8.0996296452368 8.12167976334918 7.98671139192884 9.0184659646579 8.71637516344304 7.97924144512274 8.45446283291417 7.49246981414248 7.50284828754327 7.91747184143247 7.8008706265106 7.07162487850108 8.2591454919331 8.3566248387465 7.6937387834736 8.34949235230978 0.153066315647554 0.155514366387661 0.155082359283139 0.158541476960639 0.155646706079839 0.155961268744256 0.158413495999627 0.157516137663196 0.156579592355907 0.164130408412553 0.160606730821292 0.155371574590091 0.162944594171223 0.157769457725096 0.162550242793960 0.152236391665904 0.158589008947387 0.166169245455538 0.152917484178265 2 2 + 10342921 10343875 10343304 10340364 10344196 + gene protein_coding_gene FALSE TRUE AT2G24280.1 serine carboxypeptidase S28 family protein similar to serine carboxypeptidase S28 family protein [Arabidopsis thaliana] (TAIR:AT5G65760.1); similar to Os01g0767100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044360.1); similar to Os06g0647400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058206.1); similar to PREDICTED: similar to an (GB:XP_214993.2); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S28; (InterPro:IPR008758) -0.383342554953458 -4.63739212411524 0.00146967033582876 1 6.04640886565197 16.2695729156634 -0.383342554953458 0.068811351570052
AT3G17880_at 8.07345445005265 7.9436048602693 8.17416989199545 8.15256877826334 8.36697829376545 8.24151902028976 7.68404155463775 7.28911880004854 6.67262327444832 6.85985146318238 6.70871329002568 6.90358813863099 7.0478142594935 7.18802177190147 6.99471521131808 7.30018750534565 7.5638338976064 7.00960899532383 6.82361472138878 0.158226807228473 0.155821569900631 0.156390066593329 0.158160298668048 0.157826809521665 0.159368033090607 0.160139763959120 0.1566475019302 0.167740485564452 0.160102583579987 0.158616765204695 0.158451162642828 0.159683097257995 0.156130838583706 0.159023910641222 0.156976920920488 0.160386814061037 0.163340053562854 0.159374978943648 3 3|0 +|/ 6124078 6126091 6125338.389 6123415 6126287 + gene protein_coding_gene FALSE TRUE AT3G17880.1|AT3G17880.2 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN); thiol-disulfide exchange intermediate|ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX. similar to tetratricopeptide repeat (TPR)-containing protein [Arabidopsis thaliana] (TAIR:AT4G22670.1); similar to Hsp70 interacting protein/thioredoxin chimera [Vitis labrusca] (GB:AAK64512.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.395225655262827 4.63393866316859 0.00147653400331376 1 6.04233372082609 14.9281437245214 0.395225655262827 0.0752402862286537
AT1G33340_at 4.73618407669047 6.12044875728816 3.99529147862409 4.14072737548509 4.8813936316525 4.79513188109056 6.52252950177269 6.69380648492238 4.2504232916822 4.61708403317701 4.08245577386636 4.13196100419103 4.18051845917226 3.6534485930783 4.1200219437523 5.07412505243705 5.2053119919292 5.24373969257323 4.85183765850574 0.256883435364229 0.245464900494261 0.249755867101108 0.254511364386187 0.255373457904332 0.246506863611689 0.252877229412698 0.25394428188799 0.255875960043001 0.245885623522522 0.250110053244127 0.249290390165678 0.247120669258070 0.244211608830578 0.254457730516707 0.248060435048411 0.273519463995515 0.253352372723942 0.244211608830578 1 1 + 12088151 12088620 12088368.818 12087560 12088938 + gene protein_coding_gene FALSE TRUE AT1G33340.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related Identical to Putative clathrin assembly protein At1g33340 [Arabidopsis Thaliana] (GB:Q9C502); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT4G02650.1); similar to ANTH [Medicago truncatula] (GB:ABE88454.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.83838664701769 -4.63391637117206 0.00147657842044783 1 6.042307408856 9.75297055260572 -0.83838664701769 0.24314748078931
AT4G29040_at 10.3545013815961 10.4443712494203 10.8737770865006 10.9004002885017 10.5637888897777 10.4769926116470 10.2908301246095 10.2433458318362 9.99916733234773 10.0075312163096 10.2323346312551 10.1106578439523 10.1378194707204 10.2190279424371 10.1443970181648 10.2331853954559 10.2270513480498 10.0305080313278 9.67517045329518 0.0888625135571933 0.0892710895969127 0.0930908230620118 0.0887620577557152 0.0896188587024424 0.0963840718999778 0.0917199548463056 0.0955298104960969 0.103437001092371 0.0960351223642178 0.0887620577557152 0.0902456343016947 0.0928942634047465 0.091160013305586 0.0934032618457071 0.0887620577557152 0.101841218488283 0.0940396724539044 0.0957664095488007 4 4|0 +|/ 14313518 14314360 14313918.556 14312309 14314606 + gene protein_coding_gene FALSE TRUE AT4G29040.1 RPT2A (regulatory particle triple-A 2A); ATPase 26S proteasome AAA-ATPase subunit RPT2a (RPT2a) mRNA, similar to 26S protease regulatory complex subunit 4, putative [Arabidopsis thaliana] (TAIR:AT2G20140.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABD32889.1); similar to 26S proteasome subunit 4-like protein [Brassica napus] (GB:CAC14432.1); similar to 26S proteasome subunit 4-like [Solanum tuberosum] (GB:ABB02638.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.321696974213741 4.62255314858266 0.00149940885155289 1 6.02888330449928 20.5489154550634 0.321696974213741 0.0235848429560307
AT3G63110_at 7.00128866178556 7.27912812047196 7.76542364932612 8.16588303350848 8.20953623985828 7.91865342937507 8.45311719984434 8.54078653737736 6.84215142495401 7.47035761847124 7.15357650971485 7.35671809789161 7.67555173845339 7.54907620986119 7.14800698180685 8.28406743643017 8.69358490074936 7.97141596782221 6.79210550975363 0.17350444188308 0.173713782840023 0.178557606383290 0.176522121615181 0.181920272497166 0.170572210053834 0.183159577288078 0.174076270075401 0.174427911629219 0.178263929510943 0.170738875579373 0.174621650365644 0.172098220950399 0.181452012173116 0.175676600649995 0.173028587889395 0.185115099900115 0.170350062735765 0.174213498817767 3 3 - 23329412 23329987 23329604.818 23329051 23330515 - gene protein_coding_gene FALSE TRUE AT3G63110.1 ATIPT3 (Arabidopsis thaliana isopentenyltransferase 3); transferase, transferring alkyl or aryl (other than methyl) groups Encodes cytokinin synthase. similar to ATIPT5 (Arabidopsis thaliana isopentenyltransferase 5), transferase, transferring alkyl or aryl (other than methyl) groups [Arabidopsis thaliana] (TAIR:AT5G19040.1); similar to isopentenyltransferase [Brassica rapa subsp. pekinensis] (GB:BAE43827.1); contains InterPro domain tRNA isopentenyltransferase; (InterPro:IPR002627); contains InterPro domain Isopentenyl transferase-like; (InterPro:IPR011593) 0.445211085381044 4.62089572846743 0.00150277060587353 1 6.02692333253097 15.2986627329771 0.445211085381044 0.0993914276470362
AT3G28030_at 4.93667085866113 5.14519121559917 5.56775457888985 5.36458725680508 5.39043755077113 5.51820769381514 4.3281270801108 4.65039340537931 4.1209227787061 4.85200677203981 4.55497328222353 5.02161932326074 4.67702030299878 4.76660321630865 4.35764804958832 5.09712660591335 5.04833184169457 4.42172002629555 4.94101831890397 0.218476952914129 0.214294238974105 0.226543107071106 0.214294238974105 0.214502958603619 0.216360495564623 0.218244714733797 0.214589524486313 0.223551527726711 0.216002096961016 0.228993206803972 0.214294238974105 0.225101703537398 0.222998733339305 0.229139376608000 0.214294238974105 0.21968682901921 0.230904939693717 0.217711094147442 3 3|0 +|/ 10431738 10432369 10432088.556 10425490 10432441 + gene protein_coding_gene FALSE TRUE AT3G28030.1 UVH3 (ULTRAVIOLET HYPERSENSITIVE 3, UV REPAIR DEFECTIVE 1); nuclease Required for repair of pyrimidine-pyrimidinone (6-4) dimers. Identical to DNA-repair protein UVH3 (EC 3.1.-.-) (UV hypersensitive protein 3) (XPG homolog) (ERCC5 homolog) (RAD2 homolog) (AtUVH3) (AtXPG) (AtRAD2) (UVH3) [Arabidopsis Thaliana] (GB:Q9ATY5;GB:Q9LRT2); similar to DNA repair protein, putative [Arabidopsis thaliana] (TAIR:AT1G01880.1); similar to hypothetical protein [Neurospora crassa OR74A] (GB:XP_965045.1); similar to Os03g0205400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049313.1); contains InterPro domain XPG I; (InterPro:IPR006086); contains InterPro domain DNA repair protein (XPGC)/yeast Rad; (InterPro:IPR006084); contains InterPro domain 5' (InterPro:IPR000513); contains InterPro domain XPG N-terminal; (InterPro:IPR006085); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918); contains InterPro domain Xeroderma pigmentosum group G protein; (InterPro:IPR001044) 0.400149418975756 4.62017558042422 0.00150423382285017 1 6.02607157078153 9.80322768212998 0.400149418975756 0.0783420764110652
AT3G52360_at 4.66782971228773 5.40956466069765 5.12083237167799 5.57209656492369 5.12910865108546 5.49709529535354 7.61563793503067 8.270246341747 8.12029685860978 7.89551576460924 8.01275715922401 7.6017379106237 8.11272663332378 8.318995275456 7.23970132300613 8.70465167720716 7.61732567419887 7.52904018898703 8.41519729344206 0.204535823361031 0.181487878331100 0.208578780507212 0.187068386652905 0.196741196021419 0.196439493313878 0.181160268445645 0.189228042019465 0.190445724675465 0.179378259134424 0.176922228322211 0.177387236776818 0.179806559050262 0.177382500629607 0.188692013223892 0.178523904560128 0.192316893530139 0.189732986506368 0.176922228322211 3 3|0 +|/ 19423334 19423646 19423484.3 19423098 19423896 + gene protein_coding_gene FALSE TRUE AT3G52360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35850.1) -0.706294716823808 -4.6199510772467 0.00150469028932906 1 6.02580601836312 13.9281949178373 -0.706294716823808 0.198654124454245
AT1G04750_at 9.21113003039977 9.36694646187998 9.51402134860331 9.5089616042267 9.4669449114655 9.08936511378945 8.75220018779948 8.6376213718558 8.5433356767466 8.57301535072552 9.04915130916457 9.31795230041396 8.73269947901268 9.02764803734248 9.17542585001737 8.77083952789604 8.48528171914121 8.80868862892192 8.51306481208156 0.116919205201051 0.120018284086254 0.120233997884965 0.122416714239583 0.117605572034977 0.122990954746874 0.114744848393033 0.121461691250541 0.125744310251911 0.113305847366159 0.117008198078740 0.11641647306566 0.124163997655839 0.126190127135708 0.123444559247613 0.119042238389336 0.123436716914039 0.12738926230423 0.118006864369149 1 1|0 -|/ 1331863 1332676 1332158 1331465 1333566 - gene protein_coding_gene FALSE TRUE AT1G04750.1|AT1G04750.2 VAMP7B (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B) vesicle-associated membrane protein 7B (At VAMP7B) mRNA, Identical to Vesicle-associated membrane protein 721 (AtVAMP721) (v-SNARE synaptobrevin 7B) (AtVAMP7B) (VAMP721) [Arabidopsis Thaliana] (GB:Q9ZTW3;GB:O23011;GB:Q9MAS4); similar to SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G33120.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.390335487420847 4.61767263729086 0.00150933135525937 1 6.02311046089195 17.9254486135892 0.390335487420847 0.0734207065035775
AT1G63850_at 5.5909242743266 6.3939143315461 5.31025546846984 5.39296029940464 6.11643136698704 5.78659675270814 7.22757467956414 7.22295319230984 6.4991306174221 6.5766101803559 6.12392472598641 6.82457348536716 6.26365887475451 6.26136248045165 6.45210059834599 6.5107758653503 5.44117762457686 6.43816765455163 6.36053079394669 0.21833632819622 0.219710088294704 0.226377133662694 0.232175464782761 0.231038339450559 0.231199130288687 0.224602035407844 0.222846958816221 0.232029835472990 0.214603887625515 0.217875484003081 0.213906400112095 0.223545368446223 0.213906400112095 0.218888415710662 0.213906400112095 0.225199671951474 0.219981426387134 0.219734864191482 1 1 + 23701796 23702344 23702086.909 23700625 23702371 + gene protein_coding_gene FALSE TRUE AT1G63850.1 PRLI-interacting factor-related similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT5G60050.1); similar to Os04g0579700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053645.1); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14275.1); contains InterPro domain BTB; (InterPro:IPR000210) -0.573285090556376 -4.61608498182996 0.00151257446918159 1 6.02123159489636 12.5143137261219 -0.573285090556376 0.150909754590218
AT1G01250_at 4.61313095665318 4.3293088642172 5.66525149553568 5.55666134068515 5.14421290778433 5.25371579741294 6.58732746623997 7.38336557793852 2.5543903506231 4.18890598407192 4.00574680831315 4.02937843265877 5.77412426417084 4.52645222572031 4.53851678268253 4.63804427786023 6.67300225171403 5.09778692696395 3.61416040689728 0.228901832481253 0.232276413440798 0.232074341212793 0.228901832481253 0.232184096316024 0.243028852261102 0.235604401957267 0.234740116286528 0.232554369517394 0.235112391337741 0.228901832481253 0.234230795207741 0.238033233204842 0.235928036612558 0.234422766319324 0.228901832481253 0.237391756175885 0.230457474544411 0.244147783481934 1 1 - 104769 105175 104986.364 104491 105330 - gene protein_coding_gene FALSE TRUE AT1G01250.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to TNY (TINY), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G25810.1); similar to Os04g0549700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053486.1); similar to HvCBF7 [Hordeum vulgare subsp. vulgare] (GB:AAX23704.1); similar to OSIGBa0134H18.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67502.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.567286542411008 4.61590604741914 0.00151294045137183 1 6.02101981139093 9.74805533920399 0.567286542411008 0.148667388999900
AT1G06640_at 8.62503330284092 8.70178422424048 7.53553135739157 7.08050015655723 7.98403443624804 7.25052539695152 7.92620881274775 7.84294597741159 8.3894230805825 9.02140454712858 8.75076970522102 8.77627446070608 7.94182202033193 8.39508540658353 8.354340490574 8.45199177084183 8.31058487374559 8.72636168213508 8.98060744263144 0.168177941180005 0.167950381656568 0.180922811742563 0.181945311878339 0.172003848838163 0.178763387423568 0.166980335051856 0.167597052558465 0.183322064039354 0.171084322476521 0.170550078832528 0.168934176326422 0.166191815082314 0.181464229735477 0.176046245239670 0.166996853834017 0.178299940823687 0.168529735430938 0.168103642626092 1 1 + 2033106 2033745 2033446.364 2032337 2034017 + gene protein_coding_gene FALSE TRUE AT1G06640.1|AT1G06640.2 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06650.2); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.572543232351608 -4.61552008932605 0.00151373019366556 1 6.02056297868219 16.4985948704061 -0.572543232351608 0.150658204705245
AT4G32850_at 8.71290378932226 9.10507571742264 9.13529119683332 9.27625882218434 9.12133975877229 8.99838700337525 8.18259571793325 8.46001796445142 8.07227537904979 8.81138288916565 8.87547930629803 9.08116722376437 8.95114000629126 9.07176589470548 8.27177581810471 9.3646584716935 9.08688953623429 9.00769748720372 9.02889523159047 0.16334502662155 0.147585060519258 0.156384748409509 0.145165628510048 0.144141639058285 0.152393875564053 0.156824074289025 0.148000915564001 0.187191597947952 0.144759891208324 0.153576504111295 0.146937995770275 0.149648134400392 0.153880974486566 0.169406733948701 0.143288172995136 0.157838185850725 0.144612448951799 0.146698440539487 4 4 + 15853155 15853724 15853405.636 15849776 15854872 + gene protein_coding_gene FALSE TRUE AT4G32850.1|AT4G32850.2|AT4G32850.3|AT4G32850.4|AT4G32850.5|AT4G32850.6|AT4G32850.7|AT4G32850.8 nPAP (NUCLEAR POLY(A) POLYMERASE); nucleotidyltransferase Encodes a nuclear poly(A) polymerase. similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G17980.1); similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G25850.2); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G17980.1); similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G25850.1); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT2G25850.3); similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G17980.1); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to Poly(A) polymerase central domain, putative [Medicago truncatula] (GB:ABE90424.1); similar to PAP/25A core; Poly(A) polymerase, RNA-binding re (GB:ABE80786.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010) 0.421987391388597 4.612927152041 0.00151904738591971 1 6.01749319310324 17.6746535219396 0.421987391388597 0.0892115130363886
AT1G55490_at 10.5547506482888 10.5919396235531 9.95857144104058 9.86785448179976 10.1570250142501 9.74332403741973 10.7975762153378 10.8636267658041 10.1506417372706 10.8895030797923 10.0829988026987 10.9773184194814 10.3411600791579 10.2005592336027 11.3199763185653 10.5152009882771 10.2849220418433 10.1796136202241 10.4631247359163 0.101067909947699 0.097387203129352 0.107689834431485 0.103986955171198 0.102183934988983 0.10575456542344 0.103448248785597 0.100382949237011 0.114824192367983 0.0974555199982452 0.0981488631535511 0.099222775629355 0.0983315947891878 0.106108312012356 0.098481038092497 0.097387203129352 0.104221105224426 0.099379238926274 0.0996704433926657 1 0|1 /|- 20719519 20720092 20719710 20719229 20722862 - gene protein_coding_gene FALSE TRUE AT1G55490.1|AT1G55490.2 CPN60B (CHAPERONIN 60 BETA); ATP binding / protein binding / unfolded protein binding encodes the beta subunit of the chloroplast chaperonin 60, a homologue of bacterial GroEL. Mutants in this gene develops lesions on its leaves, expresses systemic acquired resistance (SAR) and develops accelerated cell death to heat shock stress. The protein has molecular chaperone activity for suppressing protein aggregation in vitro. Identical to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) [Arabidopsis Thaliana] (GB:P21240;GB:Q9SAV2); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G26230.1); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P08927); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P21241); similar to chaperonin-60 beta subunit (GB:AAB39827.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.391825366315064 -4.61177198853886 0.00152142270843747 1 6.01612519970379 20.8112377979239 -0.391825366315064 0.0744585182378167
AT3G62580_at 9.4580171375492 9.79745216150625 9.57252247554715 9.87028779034025 9.60961444323235 9.15084120413175 9.15417298259379 9.14305033966242 7.3835124027282 8.36958836184347 8.40795457109324 8.56380868838789 8.68349439085643 8.51746135835435 8.59874944442683 8.70121785253291 8.69649086007012 9.0170787688696 7.8462881981074 0.20946778893731 0.206783344563748 0.212453167154202 0.206861131321876 0.205274240801354 0.210808092582451 0.200393125853517 0.201941015686927 0.2343207075744 0.203473796102065 0.207635570779278 0.200393125853517 0.203439393883204 0.210781229703911 0.208235837594566 0.208423263371899 0.213077510555166 0.211955819176382 0.211725225790247 3 3|0 +|/ 23157949 23158635 23158296.6 23157804 23158927 + gene protein_coding_gene FALSE TRUE AT3G62580.1 similar to late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72100.1); similar to Os12g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067006.1); similar to Os11g0673100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068440.1); similar to hypothetical protein MtrDRAFT_AC152921g2v1 [Medicago truncatula] (GB:ABE78085.1); contains domain MBC3205 (PTHR23241:SF8); contains domain LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELATED (PTHR23241) 0.472231163624596 4.61078439807615 0.00152345663764376 1 6.01495546171241 17.7268673065122 0.472231163624596 0.111412387772213
AT1G69935_at 7.2929330317581 7.4438690713648 8.02543964134382 7.85238698582685 8.11177696488406 8.06994472023707 7.70885133381987 7.99013376845798 7.31158365925669 6.69071036413516 7.37867427098948 6.76928529687623 7.24387090465565 7.61967672176496 6.87410379387808 7.91128258949 7.58279522233734 7.53021672851828 7.07924540179231 0.206501436532221 0.202504406059042 0.199149892770874 0.201188920320948 0.204637329191190 0.213416910158083 0.201672567221676 0.208110930540347 0.220260232422448 0.220244934853492 0.205428955493389 0.205527827442710 0.217251294413855 0.197479546735206 0.217896442445045 0.197493159493923 0.208033404560908 0.208007506911955 0.209957565717794 1 1|0 -|/ 26345765 26346667 26346216 26345464 26346789 - gene protein_coding_gene FALSE TRUE AT1G69935.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33780.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94797.1) 0.371249329695897 4.61057259359255 0.00152389322848328 1 6.01470456978622 15.0073759394408 0.371249329695897 0.063253469213993
AT3G47570_at 5.23445459963255 5.40961165630144 4.64936328931654 4.29548627392652 4.54270176382226 4.42005511877177 4.15965284278725 4.11239269948455 5.47059754178836 4.73012669861302 4.26514003537479 4.7945341457065 4.46042616797563 4.58056858219887 4.31344877616753 4.59074227679006 4.26294487651949 4.69069558471196 4.84938187935734 0.198611386713652 0.213921038021322 0.206751511874825 0.193407932549538 0.196875998851648 0.212273773046406 0.193407932549538 0.20268178836844 0.2015251999655 0.197045970575904 0.206545653585060 0.197245105779047 0.196746043195156 0.198508910421472 0.198442201445779 0.200112891724502 0.203932073745483 0.202000674093897 0.19700321366143 3 3|0 +|/ 17541055 17541611 17541365.4 17538492 17541914 + gene protein_coding_gene FALSE TRUE AT3G47570.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47090.1); similar to EFR (EF-TU RECEPTOR), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G20480.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G47580.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91397.1); similar to Leucine Rich Repeat family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99894.1); similar to putative protein kinase Xa21 [Oryza sativa (japonica cultivar-group)] (GB:BAB03627.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.387007911165571 -4.60976487227459 0.00152555941857718 1 6.0137477130167 9.35872207830545 -0.387007911165571 0.0720174956663451
AT1G64150_at 6.81208053289724 6.53352640133629 5.29720472190561 5.39692122341809 6.83161305101213 6.07726936839315 7.29094400756884 7.27268698314242 7.1793492702896 7.05668913214215 6.84549143908228 7.34349421069184 6.67620863620713 7.53731433619613 7.44297449887612 6.88372526630367 6.06965485057613 7.1510009569219 6.78095455109607 0.235529650373154 0.236116981936165 0.235748177925144 0.237414087943391 0.227068286524899 0.231420094191498 0.228989012015921 0.228328888618818 0.243362411590555 0.240600952484813 0.231765382828867 0.226948611450239 0.231223884563196 0.242515788194469 0.231648555933144 0.236842044621112 0.24708064442386 0.235866511224722 0.226948611450239 1 0|1 /|- 23812718 23815132 23814190 23812574 23816340 - gene protein_coding_gene FALSE TRUE AT1G64150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G13590.1); similar to Major intrinsic protein; Protein of unknown function UPF0016 [Medicago truncatula] (GB:ABE79746.1); contains InterPro domain Protein of unknown function UPF0016; (InterPro:IPR001727) -0.544244341769831 -4.60841088387663 0.00152835687920303 1 6.01214346283155 13.4387294573090 -0.544244341769831 0.140260083902135
AT3G57420_at 4.95365231862157 5.09001244584118 4.49616066656252 4.22107584872901 4.74711157819578 4.39070056265513 5.589371402057 5.17551465983548 5.13854577943544 4.86088936074411 5.21484517635973 5.5898071065858 4.55382960282604 4.90000599637256 5.01354969068572 4.80246676554542 4.61215827605314 4.90546013902171 5.4215852080036 0.234245608302043 0.246230902280328 0.235277612120777 0.241325483653860 0.235117162137398 0.249212121473935 0.23616744696898 0.248720292500704 0.262894736110699 0.236343419771604 0.235430131636796 0.236448234304518 0.245033976042396 0.239990234446312 0.240450277088555 0.239785088116541 0.241526630850807 0.238178270761961 0.24182595385820 3 3 - 21263653 21264259 21263842.727 21263396 21266253 - gene protein_coding_gene FALSE TRUE AT3G57420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41770.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16125.1); similar to Os07g0656400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060503.1); similar to Os05g0391200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055443.1) -0.464850157216489 -4.60785408877824 0.00152950887474543 1 6.01148365725269 9.87762766543337 -0.464850157216489 0.108428373755681
AT3G02600_at 6.92791319065545 6.97681256803679 5.66194078424203 5.67436816609973 6.77920185871974 6.45113756218027 6.310336353668 6.2546812863361 6.66160171518083 6.00935729569603 5.95145919230280 6.4032579045672 6.23887500175428 6.31892044142561 5.86263395867445 6.45765603459612 5.46060931032381 5.75223041363633 6.24414524245785 0.193484647076991 0.188104383688106 0.206040116175227 0.193260053919249 0.189520151264531 0.217491013455219 0.189052155348333 0.190620882008790 0.188701652809647 0.193186918287061 0.189525711155765 0.188421752499183 0.192203552275826 0.193234714362124 0.191548017856448 0.190209536998031 0.221660974190546 0.193121288285364 0.194777632254315 3 3|0 +|/ 553488 554285 553890.667 551107 554678 + gene protein_coding_gene FALSE TRUE AT3G02600.1|AT3G02600.2|AT3G02600.3|AT3G02600.4|AT3G02600.5 LPP3 (LIPID PHOSPHATE PHOSPHATASE 3); phosphatidate phosphatase|LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) Encodes phosphatidic acid phosphatase. Expressed during germination. Identical to Putative lipid phosphate phosphatase 3, chloroplast precursor (EC 3.1.3.-) (AtLPP3) (Phosphatidic acid phosphatase 3) (Phosphatidate phosphohydrolase 3) (LPP3) [Arabidopsis Thaliana] (GB:Q8LFD1;GB:Q9M882); similar to ATPAP2 (PHOSPHATIDIC ACID PHOSPHATASE 2), phosphatidate phosphatase [Arabidopsis thaliana] (TAIR:AT1G15080.1); similar to phosphatidic acid phosphatase alpha [Vigna unguiculata] (GB:AAF89579.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) -0.362551612907569 -4.60673660105647 0.00153182376069855 1 6.01015925806533 12.5599189878781 -0.362551612907569 0.058242409830179
AT4G15920_at 8.90476134496394 9.26081782528603 9.45457939717007 9.57362250792072 9.66730445855888 9.5107455653064 10.3974627710484 10.4764347829522 8.44788366485906 9.82068516846633 10.4453021276854 10.0051238017547 10.1091939573622 10.2183307419778 9.99869271048357 10.1996535346561 10.2855055042507 10.1479086128833 9.3188793237974 0.112454877976438 0.104850296602120 0.103784502819270 0.103660552971676 0.103231353512940 0.107162565111768 0.103622683824086 0.105765102382215 0.141133026578423 0.105968369278410 0.104266421017911 0.106688029472159 0.104048446326300 0.111649738907324 0.112807040031251 0.104536391051341 0.115408840450437 0.118736106628043 0.103648493763283 4 0|4 /|- 9030770 9032454 9031860.75 9030531 9033409 - gene protein_coding_gene FALSE TRUE AT4G15920.1 nodulin MtN3 family protein similar to nodulin MtN3 family protein [Arabidopsis thaliana] (TAIR:AT3G16690.1); similar to MtN3/saliva family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95863.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.386045811341905 4.60525231165934 0.00153490433247951 1 6.00839979132662 19.3417310447788 0.386045811341905 0.0717070423241123
AT1G77610_at 7.0024084770181 6.94580810189036 7.03643748028848 6.96718885924117 7.7364711981789 7.15300855684796 7.47121463137165 7.23572369930112 5.93575833274588 5.54884242519714 6.38217440291696 6.90106438448955 6.41897672454868 6.3790757571922 6.70850858249665 6.31671673713877 6.59289814797937 6.069938449934 5.2986198344712 0.198305635212839 0.195608567533498 0.194902338279728 0.196326665389925 0.195728029523823 0.211815919113289 0.194734994090732 0.202492481110110 0.214066003106440 0.200899501930510 0.195921952428275 0.192621417824829 0.198757203427067 0.210703162368402 0.209277272615066 0.195634833939814 0.204142086591227 0.198323120729221 0.201315048726201 1 1 + 29171039 29172308 29171596.909 29170104 29172667 + gene protein_coding_gene FALSE TRUE AT1G77610.1 glucose-6-phosphate/phosphate translocator-related similar to glucose-6-phosphate/phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G21870.1); similar to hypothetical protein DDBDRAFT_0187416 [Dictyostelium discoideum AX4] (GB:XP_637234.1); similar to Os08g0104900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060782.1); similar to Os04g0692000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054364.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.468125040221385 4.60396903061432 0.00153757311454782 1 6.00687827693129 13.2263206317548 0.468125040221385 0.109979418994695
AT1G03900_at 9.42244671284312 9.50649100469671 9.73773586418057 9.84505414777698 9.86816813898205 9.58591097522198 8.94175077009957 9.181333724497 8.38021505703234 8.49470395467188 8.93929021707789 8.53970857840731 8.67137823745569 9.00143740174591 8.68151720482016 8.75632562592445 8.7948603977246 8.11901095831982 8.39999045533158 0.145103838133861 0.143743951195543 0.144546103718152 0.146314257644374 0.147244107541220 0.152598311641897 0.145358346411114 0.148703988968377 0.150747213143837 0.143254573590215 0.142563636969925 0.142096759889229 0.144215170025591 0.145076811050781 0.151380632958536 0.143146339001039 0.149665322110501 0.148686481537517 0.139488171284054 1 1 + 991473 992779 992126.727 991138 993117 + gene protein_coding_gene FALSE TRUE AT1G03900.1 ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4) member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. Identical to Uncharacterized protein At1g03900 [Arabidopsis Thaliana] (GB:Q681Q7;GB:Q67YX5;GB:Q94B37;GB:Q9ZWB0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58600.1); similar to LOC553536 protein [Danio rerio] (GB:AAH78360.1); similar to Os10g0476000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064844.1); contains InterPro domain Adaptin ear-binding coat-associated protein 1 NECAP-1; (InterPro:IPR012466) 0.379591491922751 4.6038399305917 0.00153784187539921 1 6.00672519376035 18.0675668673021 0.379591491922751 0.0682743429662124
AT2G17450_at 8.68588681276177 8.90746782564304 8.23801865377552 8.49354998918981 9.16234339101723 9.04885080771906 8.36228963818535 8.34239626169859 8.49374276091486 7.78102699626202 8.6490944534798 8.8262282508412 8.42768810914904 8.56754660944686 8.8086712034858 8.44280669438832 8.50466041424597 8.78117711811804 7.87771283624113 0.139741632285142 0.137378241775050 0.142512164759913 0.146169208834832 0.136644419971371 0.149327890280627 0.142797527829605 0.140660869579029 0.154102838877298 0.142442750216421 0.139211932210551 0.134060179498286 0.144164161028283 0.144254796876183 0.14179235019812 0.136116952553785 0.151793321837777 0.139067736798325 0.143703428552854 2 2 - 7583801 7584177 7583964.364 7583556 7584382 - gene protein_coding_gene FALSE TRUE AT2G17450.1 RHA3A (RING-H2 finger A3A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA3a. Identical to RING-H2 finger protein ATL2A (RING-H2 zinc finger protein RHA3a) (ATL2A) [Arabidopsis Thaliana] (GB:O22755); similar to RHA3B (RING-H2 finger A3B), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G35480.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78080.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.368168575679134 4.60241802377608 0.00154080536482025 1 6.00503893700354 16.9935062413907 0.368168575679134 0.0618342310492201
AT2G02360_at 8.61727947584527 8.67976150971479 9.0740697414053 8.9637339195957 9.2535820898488 8.77582960469675 8.28477297357254 8.23095952089797 7.92986815002298 7.54278074931838 7.87275968930516 7.61549904884748 8.11886433634377 8.2133198861589 7.37745926107371 8.1700905538137 8.03326234620444 8.19836383238245 7.58236836044791 0.174471509026490 0.183085685718564 0.178604216179686 0.170706928574194 0.184908087893484 0.176112202154048 0.178493530109564 0.181657049851858 0.189219221051241 0.170543234907430 0.177172567013398 0.172692707484044 0.173830354538979 0.177319965038999 0.186264793124606 0.175110027357753 0.190496054884054 0.181743988168257 0.178969409533845 2 2 - 619701 620479 620060.909 619405 620767 - gene protein_coding_gene FALSE TRUE AT2G02360.1 ATPP2-B10 (Phloem protein 2-B10) similar to ATPP2-B8 (Phloem protein 2-B8) [Arabidopsis thaliana] (TAIR:AT2G02340.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96399.2); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.414278542441056 4.60190540018985 0.00154187526942417 1 6.00443092059973 16.5524776657118 0.414278542441056 0.0860451252314206
AT4G38090_at 7.75663710327673 7.74159581067245 8.02391005020144 7.83171071724915 8.22728120644248 8.32425247132267 7.31196128569163 7.24107498015567 7.56431107529285 7.74528838863792 7.93890504171897 7.48486065645955 7.65009658564382 7.60261880316611 7.40099194323457 7.9039838585894 7.95664295597738 7.90874691975288 7.63758155945691 0.162930421503734 0.160799773204784 0.163770714350093 0.164969334963604 0.160691458283358 0.165043205219737 0.161377415190622 0.156552828866689 0.161313666766386 0.159952448082815 0.160679317554180 0.153496018748214 0.160440931811471 0.158899269622181 0.15275318984277 0.157141642921891 0.158892611018757 0.164466451006832 0.158750377136181 4 4|0 -|/ 17883834 17884512 17884308 17883694 17884720 - gene protein_coding_gene FALSE TRUE AT4G38090.1|AT4G38090.2 similar to Os08g0478100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062049.1); similar to hypothetical protein TTC0689 [Thermus thermophilus HB27] (GB:YP_004664.1); contains InterPro domain Protein of unknown function UPF0029; (InterPro:IPR001498) 0.335383410396711 4.60071603031765 0.00154436071327720 1 6.00302004062273 15.4972610464751 0.335383410396711 0.0393086035379693
AT1G73200_at 6.16077770221862 6.24529356180433 5.65040329597061 5.64409946638255 5.8259099111807 5.31443311100697 5.72240036432935 5.74356629282742 6.16254372739697 6.08867756807934 6.06519419292343 5.49965582769895 5.66236119429595 5.39342085281492 6.14784175813746 5.39383551420643 4.65019516442731 5.76542940539308 5.92025425141136 0.203356028339471 0.206171516629331 0.212154823860556 0.203356028339471 0.211470935509953 0.226149557885905 0.209456291018651 0.206745008092820 0.216113726000419 0.208248370586341 0.208853567943456 0.203356028339471 0.206423594868221 0.208501562085605 0.206614411120964 0.211537183649406 0.220833038476435 0.219314411266791 0.203356028339471 1 1 - 27527279 27527669 27527490.455 27527115 27530379 - gene protein_coding_gene FALSE TRUE AT1G73200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17820.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23057.1); similar to Os02g0827500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048594.1); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.422107405525875 -4.60058518100227 0.00154463441511535 1 6.00286480608451 11.6030605903983 -0.422107405525875 0.0897950588781957
AT3G17470_at 7.0419463041622 6.95067001029287 7.14343535258749 6.75533012335938 7.3770345177057 7.10842945540361 7.77479924720256 7.81283358482434 8.18783753685538 7.88647198182154 7.80520051388795 7.4717469342542 7.65440828385613 7.63351044020878 7.35333142630531 7.73851151066959 7.13373194713843 7.41319342044187 8.05762727040199 0.135978334033807 0.135225582623105 0.134633895931060 0.137953663073334 0.135844673110733 0.147203815056366 0.131263380752772 0.134216836553414 0.140155316355533 0.134926699437792 0.139439606557787 0.134648685740475 0.136829928127280 0.135917340294785 0.138664651874859 0.131237350372513 0.139108510902622 0.132140833760792 0.133725674093527 3 3 + 5981233 5981945 5981560.364 5979840 5982121 + gene protein_coding_gene FALSE TRUE AT3G17470.1 RelA/SpoT domain-containing protein / calcium-binding EF-hand family protein similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT like protein RSH4 [Nicotiana tabacum] (GB:BAC76005.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.408764772227066 -4.60042604657457 0.00154496735245646 1 6.00267601101091 15.0302764440864 -0.408764772227066 0.0834533254773168
AT1G52300_at 11.5011742893692 11.5877725212792 11.0793892660856 11.1409618290559 11.1909092301018 10.9663013425543 11.6568961833449 11.6913497851206 11.4361265702091 11.5264203232838 11.4089535941115 11.7295296225528 11.1368781562040 11.3263165617792 11.8065721121387 11.0739172944249 10.9976140477092 11.13854084472 11.5170086143598 0.07710820774896 0.0726459410539398 0.0720261485996816 0.07420898107039 0.07504367610293 0.0753959456805378 0.071174421261353 0.0738403343024937 0.0742178117969278 0.0708155492435956 0.0723179556435013 0.0708155492435956 0.0715389356255913 0.0716684894726077 0.0730639344086802 0.0716202309132964 0.0714040713143519 0.072265903064759 0.0732433747334355 1 1|0 -|/ 19478882 19479646 19479085.2 19478567 19479903 - gene protein_coding_gene FALSE TRUE AT1G52300.1 60S ribosomal protein L37 (RPL37B) Identical to 60S ribosomal protein L37-2 (RPL37B) [Arabidopsis Thaliana] (GB:Q43292;GB:Q9C822); similar to 60S ribosomal protein L37 (RPL37C) [Arabidopsis thaliana] (TAIR:AT3G16080.1); similar to ribosomal protein L37 [Glycine max] (GB:AAS47512.1); contains InterPro domain Ribosomal protein L37e; (InterPro:IPR001569) -0.340401333954117 -4.60012838078029 0.00154559032998171 1 6.00232285176339 22.7620820301086 -0.340401333954117 0.0434109230206653
AT4G02080_at 10.5717809647804 10.6915373167237 10.8770661142700 10.9956549658748 10.8315131461929 11.0657147718084 10.0726224754201 10.5323993787941 10.2316806507179 10.1785242740360 10.6620651009175 10.4831153827733 10.6595184991758 10.5777510051755 10.5478741220328 10.644242139478 10.6053094830697 10.5723288133441 10.2121158801447 0.0773851319475464 0.0774506508558533 0.076865708913301 0.0801452840359749 0.075413857520177 0.0772155084169145 0.075509183297045 0.0774640427333895 0.0780726630879699 0.0776405020580533 0.0748801136855124 0.0753755906353571 0.0769352381885812 0.079189949876161 0.0748700112360012 0.0748700112360012 0.0798395642600139 0.0757585691641619 0.0748700112360012 4 4|0 +|/ 921625 922448 922085.9 921454 922777 + gene protein_coding_gene FALSE TRUE AT4G02080.1 ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2); GTP binding A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Identical to GTP-binding protein SAR1A (SAR1A) [Arabidopsis Thaliana] (GB:O04834;GB:O04747;GB:O04748;GB:O04835;GB:Q42142;GB:Q96296); similar to GTP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G62560.1); similar to GTP-binding protein SAR1A (GB:O04266); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.430993757776618 4.59947480902091 0.00154695912644322 1 6.00154737916619 21.1055190600057 0.430993757776618 0.093936982582536
AT1G64200_at 4.62114316048344 5.05304475439773 3.95910630293059 3.8565324038604 3.96754970886125 3.94754370168764 5.89673550888458 5.96322380689373 4.64847125336989 6.36034847823506 6.49974623561504 6.58851524840872 6.70164075255583 6.31077246722636 6.1583938487349 6.51090081939518 5.26562649898286 6.00986488826481 5.78792062594109 0.275674732235302 0.257581475489332 0.266206013830284 0.272415941243769 0.257581475489332 0.270205113424766 0.257581475489332 0.263560692987296 0.275800495359156 0.263863581096927 0.257581475489332 0.257581475489332 0.260520368147354 0.272049846727705 0.257581475489332 0.26025635675865 0.261277791098481 0.265453300884578 0.257581475489332 1 1|0 -|/ 23832202 23832899 23832596.778 23832189 23833665 - gene protein_coding_gene FALSE TRUE AT1G64200.1 VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism similar to TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) [Arabidopsis thaliana] (TAIR:AT4G11150.1); similar to vacuolar ATPase subunit E-like protein [Thellun (GB:AAM19709.1); contains InterPro domain ATPase, V1/A1 complex, subunit E; (InterPro:IPR002842) -0.397042317973641 -4.59768254930431 0.00155071943571441 1 5.99942043950789 10.5854079422066 -0.397042317973641 0.0777555471870703
AT1G27980_at 7.60208640417119 7.47679955496935 7.86171668842401 7.72803889019427 7.47565004676784 6.74885689019576 4.10256069355349 4.44486211752148 5.10848035096137 5.26414216884928 4.21601762394997 3.94346742099523 4.58507100299346 4.62473387668949 4.36519174896595 4.44895282594104 4.96819735311265 4.76575653157933 4.44602525643382 0.226099312648727 0.221556566929344 0.231498232348483 0.23404082710114 0.223105592405272 0.235770626903826 0.219114394049179 0.224717931406784 0.219588755660954 0.223010214902612 0.222051228198213 0.220344401074426 0.226260809526645 0.219114394049179 0.224541951877629 0.222936801517903 0.231710776945614 0.223862339716527 0.225130827793991 1 1|0 +|/ 9751742 9752570 9752146.444 9748724 9752756 + gene protein_coding_gene FALSE TRUE AT1G27980.1 pyridoxal-dependent decarboxylase family protein Identical to Sphingosine-1-phosphate lyase (EC 4.1.2.27) (SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) [Arabidopsis Thaliana] (GB:Q9C509;GB:Q8LEF9); similar to glutamate decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT3G17760.1); similar to sphingosine-1-phosphate lyase [Oryza sativa (japonica cultivar-group)] (GB:AAX89367.1); similar to Sphingosine-1-phosphate lyase precursor (SP-lyase) (SPL) (Sphingosine-1-phosphate aldolase) (GB:Q52RG7); similar to putative sphingosine-1-phosphate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD45497.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129) 0.548556362810914 4.59339869891011 0.00155974736163504 1 5.99433428219913 11.3946828141129 0.548556362810914 0.142595898967932
AT3G26570_at 10.9780157833877 11.1398682282660 11.1440492838646 11.1679218670641 10.9205308423352 10.8743456594299 12.0549673115532 12.3128011641914 12.0187189743021 12.1913887825827 12.0280393783083 11.9910072266655 11.9488383800089 11.9728795093266 11.8581944347597 12.1389925567369 11.9608050182425 12.0026771874532 12.0923575514443 0.0736933132106473 0.0684510469620707 0.0745012819039104 0.0692869502543887 0.0684510469620707 0.0728453717345497 0.0690796073763456 0.0692334734053947 0.073545898664715 0.0684510469620707 0.0696224879322395 0.0697123518772847 0.0684510469620707 0.0695588251552707 0.0715199206092137 0.0684510469620707 0.0778095789668748 0.0706933294410717 0.0684510469620707 3 3 + 9759087 9759596 9759341.091 9757428 9759870 + gene protein_coding_gene FALSE TRUE AT3G26570.1|AT3G26570.2 PHT2;1 (phosphate transporter 2;1) low affinity phosphate transporter Identical to Inorganic phosphate transporter 2-1, chloroplast precursor (H(+)/Pi cotransporter) (AtPht2;1) (PHT2-1) [Arabidopsis Thaliana] (GB:Q38954;GB:Q3EAZ6); similar to phosphate hydrogen transporter [Spinacia oleracea] (GB:CAD36013.1); similar to putative phosphate permease [Mesembryanthemum crystallinum] (GB:AAB41897.1); similar to phosphate transporter PHT2-1 [Medicago truncatula] (GB:AAN46087.1); contains InterPro domain Phosphate transporter; (InterPro:IPR001204) -0.35392188334072 -4.59268557618639 0.00156125572242758 1 5.99348727868997 23.3683130079519 -0.35392188334072 0.0534448954317625
AT2G06530_at 9.83790615900113 9.98023065363713 10.2857418499433 10.2461429416188 10.3208206346986 10.145986656989 9.69013048303228 9.72305234369216 9.37082399321232 9.4332839486522 9.63363113788465 9.46294696509942 9.59425300630252 9.67306394655188 9.4800395244583 9.6621387495175 9.46063641206703 9.62920457206918 9.23249264384027 0.0886852662781461 0.0884461466068821 0.0885719641263211 0.0881053450655003 0.0908676181120957 0.0907072452662171 0.087751096993307 0.0867610027491262 0.0971917811676331 0.0886052411055896 0.0881007591131162 0.0861755634659495 0.0880504798089043 0.0878124785499027 0.0900619534279341 0.0861755634659495 0.100720009730890 0.0906489253670153 0.0937379023309008 2 2|0 -|/ 2588788 2589749 2589199.444 2588542 2590442 - gene protein_coding_gene FALSE TRUE AT2G06530.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G03950.1); similar to BRI1-KD interacting protein 109 [Oryza sativa (japonica cultivar-group)] (GB:BAD11337.1); similar to Os07g0236800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059248.1); similar to Os11g0703400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068537.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.335399435823633 4.58937248687792 0.00156828408743360 1 5.9895509865597 19.4887628742326 0.335399435823633 0.0400183452666695
AT3G55280_at 8.66446305515455 8.93464191310437 8.1371191113212 8.04044940845552 8.28516161077867 8.19646550620046 9.1710997410746 9.13297495963995 8.06480595682247 8.24947854734769 8.14549016138864 8.89291484550612 7.98779832539295 8.27173338766695 8.94034919163707 8.03325524484532 7.9719989708193 7.87132336971889 8.1571664291143 0.144311011045637 0.141266096069576 0.152680589080201 0.142067595508929 0.137025894992231 0.146219641810817 0.141737192389705 0.142159685812150 0.15338226881092 0.141253908938464 0.142291689891160 0.139908424017197 0.141004804924476 0.140024077213609 0.140149920817856 0.140685114486260 0.145806101296772 0.141778700329672 0.140584945759270 3 3|0 +|/ 20511979 20512441 20512189.6 20511312 20512686 + gene protein_coding_gene FALSE TRUE AT3G55280.1|AT3G55280.2|AT3G55280.3 60S ribosomal protein L23A (RPL23aB) Identical to 60S ribosomal protein L23a-2 (RPL23AB) [Arabidopsis Thaliana] (GB:Q9M3C3); similar to ATRPL23A (RIBOSOMAL PROTEIN L23A), RNA binding / structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G39460.1); similar to unknown [Brassica rapa] (GB:ABB97038.1); contains InterPro domain Ribosomal protein L23, N-terminal; (InterPro:IPR005633); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ribosomal protein L25/L23; (InterPro:IPR013025); contains InterPro domain Ribosomal L23 protein; (InterPro:IPR001014) -0.351894191013660 -4.58688296723357 0.00157358781697199 1 5.98659187263189 16.7810510373245 -0.351894191013660 0.0523936090551636
AT3G25070_at 9.26757410849775 9.19458699758283 9.52049216381525 9.49056131427778 9.470762714573 9.27004471170314 8.61978189878622 8.53996647497884 8.43921042289764 8.45037673828505 8.5903826235758 8.76213365669756 8.47905397863427 8.68529224017247 8.2886847126718 8.83314193257108 8.5456637600171 8.55207162802025 8.47516651760721 0.139128957574751 0.139263965762375 0.141301364133948 0.139785561496912 0.146531779425853 0.142336992671953 0.147422068162931 0.134649419638624 0.155409103502833 0.140391081045161 0.144863605647792 0.133732718310251 0.140302855064459 0.144291657933003 0.139428761837338 0.137541750970744 0.139741817525274 0.142543026938626 0.140914925963059 3 3 + 9132988 9133571 9133250.9 9132317 9134037 + gene protein_coding_gene FALSE TRUE AT3G25070.1 RIN4 (RPM1 INTERACTING PROTEIN 4) Encodes a member of the R protein complex and may represent a virulence target of type III pili effector proteins (virulence factors) from bacterial pathogens, which is 'guarded' by R protein complex (RPM1 and RPS2 proteins). RIN4 physically interacts with RPS2 and RPM1 in vivo. Bacterial avirulence (Avr) effectors AvrB, AvrRpm1, and AvrRpt2 induce a mobility shift in RIN4 and expression of AvrRpt2 induces rapid degradation of RIN4. RIN4 contains 2 sites for AvrRpt2 autocleavage, called RCS1 and RCS2. Overexpression of RIN4 inhibits multiple phenotypes associated with AvrRpt2 function and also inhibits PAMP-induced defense signaling. Attached to the plasma membrane at its carboxyl terminus. Cleaved by AvrRpt2 at two PxFGxW motifs, one releasing a large portion of RIN4 from the plasma membrane and both exposing amino-terminal residues that destabilized the carboxyl-terminal cleavage products by targeting them for N-end ubiquitylation and proteasomal degradation. Identical to RPM1-interacting protein 4 (RIN4) [Arabidopsis Thaliana] (GB:Q8GYN5;GB:Q9LSG9); similar to defense protein-related [Arabidopsis thaliana] (TAIR:AT5G48657.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08744.1); similar to Os08g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062298.1); contains InterPro domain Nitrate-induced NOI; (InterPro:IPR008700) 0.334811514872978 4.58496499129121 0.00157768712439378 1 5.98431134669625 17.6952067777644 0.334811514872978 0.0397954966200438
AT2G46450_at 9.35729177654149 9.20980743506618 9.39780016082207 8.99253287633653 8.89794209971379 8.50365514046793 9.01855544466307 8.78951664583552 9.43721591770725 9.31110112248651 8.46018709639813 8.74643470465957 8.45242770504699 8.68313189505593 8.18032746882511 8.98119944361809 8.25568029349692 8.69017682516768 9.26041152929754 0.105441137330455 0.0978335968819858 0.0976022647317916 0.0978169875843573 0.101928018621617 0.0992190378780416 0.0988732798049942 0.104125819873103 0.100631668005023 0.0987968948213008 0.105077724465570 0.098497731800996 0.100675264986441 0.0997858980794418 0.0995924154581522 0.100588996299956 0.101414306949192 0.101693685833869 0.097040853963197 2 2 + 19074795 19075400 19075187.455 19072789 19075437 + gene protein_coding_gene FALSE TRUE AT2G46450.1 ATCNGC12 (cyclic nucleotide gated channel 12); cyclic nucleotide binding / ion channel Member of Cyclic nucleotide gated channel family.Positive regulator of resistance against avirulent fungal pathogen.Suppresses the phenotype conferred by cpr22 in a dosage-dependent manner. Identical to Probable cyclic nucleotide-gated ion channel 12 (Cyclic nucleotide- and calmodulin-regulated ion channel 12) (CNGC12) [Arabidopsis Thaliana] (GB:Q8GWD2;GB:Q9SKD5); similar to ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46430.1); similar to ATCNGC11 (cyclic nucleotide gated channel 11), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G46440.1); similar to Probable cyclic nucleotide-gated ion channel 12 (Cyclic nucleotide-and calmodulin-regulated ion channel 12) (GB:Q8GWD2); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.462928716827514 -4.5844980677781 0.00157868682850087 1 5.98375606106444 17.9671069651961 -0.462928716827514 0.108613576729923
AT1G25260_at 7.91070804027935 8.38113213529688 7.41820616366366 7.66055284101071 7.92976732376454 8.01510097009314 8.05607851392025 8.40698950793418 7.06327281568092 6.79634555333291 6.27377829233175 7.10138453582024 6.67339163812516 6.27326909810622 7.557910571819 6.2685639290158 6.61622859699104 6.19223064616117 7.5098563243109 0.188182139031978 0.186914830288534 0.196039828074364 0.191047655258348 0.184608003555736 0.182005652978036 0.181462127985768 0.181878755865839 0.210901715743914 0.192285711075099 0.184880524540208 0.179222741416958 0.193615592322435 0.192332188568770 0.182494244077294 0.188255337172282 0.19148590169839 0.180724447540011 0.179730629558044 1 1|0 -|/ 8854208 8855365 8854812.778 8853946 8855859 - gene protein_coding_gene FALSE TRUE AT1G25260.1 acidic ribosomal protein P0-related similar to 60S acidic ribosomal protein P0 (RPP0C) [Arabidopsis thaliana] (TAIR:AT3G11250.1); similar to unknown [Solanum tuberosum] (GB:ABA40425.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790) -0.468191896143299 -4.58390834948809 0.00157995041924904 1 5.98305468617992 14.8436933843226 -0.468191896143299 0.110869992702868
AT3G62860_at 4.88839670432788 4.76469269343875 5.11269290381122 4.93667480548294 6.62143538660154 6.49115718604208 5.71651836202488 5.72597396666199 3.39932994093161 5.36334104040626 4.60475067163907 4.13986582086169 5.61434442560498 5.2931328754903 3.96667235483636 4.42301328860887 6.00744327458351 4.8170928221901 5.32720995731338 0.218311139878429 0.211278621941782 0.210887290418497 0.215837989499370 0.217111866664312 0.211511674172468 0.212401447691141 0.216056386820458 0.216498106532176 0.217181192267644 0.216807208700502 0.213245039045719 0.212674346365324 0.218282058648126 0.219142317522554 0.220497990102117 0.220117099996866 0.216644485008549 0.2194534815197 3 3 - 23250559 23251117 23250814.455 23250421 23253226 - gene protein_coding_gene FALSE TRUE AT3G62860.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G47630.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.339128550523756 4.58041945693397 0.00158744845362163 1 5.97890392286959 10.3096509616875 0.339128550523756 0.0435557897559656
AT4G10450_at 6.42407642774361 6.99039474895381 5.78536241336041 5.8182253274251 5.57054391522448 5.91073873874137 6.89464622428307 7.07603075293553 4.53318242911038 5.15901815840529 4.96185195460477 5.71689738520798 4.89009710495301 5.132379501997 5.58518934195843 4.63090595566893 5.03133901896149 4.13483378547321 5.03316673553367 0.270052498918354 0.271973404256409 0.275246298824830 0.268402052785399 0.262144144833393 0.276715599029065 0.271993857233360 0.272073530854716 0.299059234733361 0.262191990156066 0.262144144833393 0.262144144833393 0.267697735237723 0.26385886038325 0.262990908359644 0.269810706211203 0.277771975948666 0.27379744323532 0.268741068799306 4 4 - 6463863 6464428 6464215.909 6462949 6464540 - gene protein_coding_gene FALSE TRUE AT4G10450.1 60S ribosomal protein L9 (RPL90D) Identical to 60S ribosomal protein L9-2 (RPL9D) [Arabidopsis Thaliana] (GB:Q9SZX9); similar to 60S ribosomal protein L9 (RPL90B) [Arabidopsis thaliana] (TAIR:AT1G33120.1); similar to 60S ribosomal protein L9 (RPL90A/C) [Arabidopsis thaliana] (TAIR:AT1G33140.1); similar to unknown [Solanum tuberosum] (GB:ABA81856.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, signature 2; (InterPro:IPR002359) -0.48654422901892 -4.57953231890517 0.00158936113642509 1 5.97784813636660 11.2681985838099 -0.48654422901892 0.118694468246770
AT1G31870_at 7.33913664891603 7.5200576007567 7.63005155129094 7.57068411976144 7.52091150765568 7.4583525737647 7.07644064529086 6.9621420625448 6.34285433501429 6.41358661179642 6.6699190321866 7.30780783596684 6.70689088671842 7.00403983337376 6.52623827792963 6.90535433041913 6.77508860505978 6.458474743475 6.58198740016902 0.173211289206077 0.173098370445923 0.167710780756972 0.181420824365741 0.175188010261381 0.173857172697624 0.176254207944512 0.176387900279667 0.179020544986260 0.172317368053004 0.168060599993926 0.167710780756972 0.170982755587570 0.190236936986187 0.181156865210552 0.169295321039778 0.174792118672939 0.185825580198869 0.170586279794629 1 1 + 11438766 11439776 11439340.909 11436703 11440089 + gene protein_coding_gene FALSE TRUE AT1G31870.1|AT1G31870.2 similar to splicing factor PWI domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G29210.1); similar to Os08g0178300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061128.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03052.1) 0.334319804777834 4.57606882443969 0.00159685233508726 1 5.97372485431191 14.0049068264815 0.334319804777834 0.0399282785761104
AT4G25970_at 9.5133483213707 9.48619234261283 9.28111487913475 9.17781655248174 9.94648071609973 9.56127905477969 8.7712946487594 8.5949822695631 8.71591774795874 8.61129050088626 9.06309332434317 8.749985920582 9.1988584764885 9.16512957169387 9.21508210564724 9.07272562656597 8.85922973247862 9.2163072568117 8.73109414078637 0.134057175825659 0.137887960357585 0.145941165958115 0.143614510484093 0.143190114441441 0.139948059687187 0.139328366600962 0.139225943008450 0.137664005911282 0.142398213326163 0.141775192896375 0.136406035780695 0.136908071313352 0.134057175825659 0.136031577926508 0.137828558356063 0.142970187999555 0.134057175825659 0.135415685146076 4 0|4 /|+ 13188025 13189103 13188520.429 13185739 13189444 + gene protein_coding_gene FALSE TRUE AT4G25970.1 PSD2 (Phosphatidylserine decarboxylase 2) phosphatidylserine decarboxylase 2 (PSD2) similar to phosphatidylserine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT5G57190.1); similar to phosphatidylserine decarboxylase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87120.1); contains InterPro domain Phosphatidylserine decarboxylase-related; (InterPro:IPR003817); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Phosphatidylserine decarboxylase; (InterPro:IPR005221) 0.390834555165032 4.57419782698676 0.00160091496962905 1 5.97149653315042 18.1683897472853 0.390834555165032 0.075606148024782
AT4G21620_at 9.74798853711984 9.85278835093122 9.8114996577271 9.52040579662452 11.1594547769683 10.6780861981569 10.4617351252186 10.3284487615498 10.7165444984463 10.6348507861851 11.6154230069021 11.0702486812371 11.0925388031802 11.6184325486861 11.0914267184668 10.3632002314060 10.7892393778124 11.5000372126098 9.98617568407894 0.0847301609962382 0.0917924047599023 0.0904396616522206 0.0961992529322885 0.0851623466724399 0.0891513635034983 0.0866082368484297 0.093147630560638 0.0915886047744178 0.08907256046653 0.0846382946956807 0.0846382946956807 0.0854935087171269 0.0856351006221951 0.0868287169390075 0.0846382946956807 0.0904156905783361 0.0865649043936389 0.0851043230086654 4 4 + 11491538 11491852 11491728.727 11491495 11492179 + gene protein_coding_gene FALSE TRUE AT4G21620.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61255.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99958.1); similar to Os03g0676300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050889.1); contains InterPro domain Somatomedin B; (InterPro:IPR001212) 0.445666373315897 4.57206225818642 0.00160556572862659 1 5.968952338600 20.9892635565909 0.445666373315897 0.101675999452943
AT3G14350_at 6.29929529386859 6.49056605561729 5.69101648344143 5.35951881165393 6.33412443552266 5.46695526824457 7.83080518810147 7.61356505523272 7.50956297946818 7.661524411647 7.95546581057474 8.4079021063973 7.33543070255312 7.99399280720991 7.91184411276294 6.97199117146855 6.43312704828625 7.68695668681416 7.2401284224598 0.183391440938161 0.173821228765877 0.186423549065741 0.187452123582904 0.181954886819041 0.190980674901654 0.173528208981823 0.174455004565946 0.180111537805174 0.175755866156768 0.184173685398887 0.176079346489140 0.178664186429857 0.177791605344386 0.179878196605488 0.176983374331329 0.185258646038034 0.177186539274479 0.173528208981823 3 3|0 -|/ 4783126 4784044 4783542.9 4782764 4787243 - gene protein_coding_gene FALSE TRUE AT3G14350.1|AT3G14350.2|AT3G14350.3 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G53730.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G22130.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G53730.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.614485306961327 -4.57181566983565 0.00160610367776079 1 5.96865851419677 13.9144778624353 -0.614485306961327 0.168286282485346
AT1G80560_at 8.06253389370247 7.80761559677938 7.18667793459672 7.25820407733636 8.21846749936893 7.76298178115406 6.95262398642131 6.65511965294883 6.92867796359832 7.15120609720569 7.84084282792012 8.17711206932382 7.3462909500979 7.3823727516939 8.4521702186457 7.62941977086683 6.81810540572964 7.27630854671534 6.76333270790347 0.170477546627931 0.170001731526451 0.164409616993227 0.173379812646061 0.177572925348447 0.173174474148810 0.164336493023809 0.179886757072105 0.168740584685839 0.168475937087964 0.164186755913829 0.164446044715775 0.167362936086023 0.168729380452044 0.164304065544455 0.163806469581659 0.179072114203022 0.174875041012514 0.171004840459626 1 1|0 +|/ 30293946 30294994 30294449 30292655 30295190 + gene protein_coding_gene FALSE TRUE AT1G80560.1 3-isopropylmalate dehydrogenase, chloroplast, putative The AtIMD2 is one out of 3 genes encoding the enzyme 3-isopropylmalate dehydrogenase involved in leucine biosynthesis in Arabidopsis. Its subcellular location has been targeted to plastids. Identical to 3-isopropylmalate dehydrogenase 2, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase 2) (IMDH 2) (3-IPM-DH 2) (IMDH2) [Arabidopsis Thaliana] (GB:P93832;GB:Q8W4P6); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G14200.1); similar to 3-isopropylmalate dehydrogenase, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G31180.1); similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH) (GB:P29102); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804); contains InterPro domain 3-isopropylmalate dehydrogenase; (InterPro:IPR004429) 0.452349217686342 4.56957885529379 0.00161099233676433 1 5.96599271667509 14.7695614230518 0.452349217686342 0.104705278888842
AT1G50730_at 7.49170341742385 7.6133130249435 6.70987059411164 6.86223540969498 7.53857027258869 6.98961667280594 7.7196119037502 7.87695855758369 8.2580927467018 8.03736441917149 7.93026798024439 8.24974889282069 7.59343703273323 8.12339765824862 7.79419316322091 8.11704629868435 7.40491497878595 7.99372328245575 8.16531090886935 0.208608353152262 0.196986725975724 0.217069529021276 0.222012686515084 0.202611160769219 0.223295377601677 0.196986725975724 0.198474260097921 0.203516359461266 0.196986725975724 0.197978146405506 0.197724325252717 0.208803166951331 0.206831407868356 0.206364559214362 0.197762714488084 0.202279609617365 0.196986725975724 0.196986725975724 1 1|0 +|/ 18805320 18806876 18806261.333 18798943 18806931 + gene protein_coding_gene FALSE TRUE AT1G50730.1 similar to hypothetical protein DDBDRAFT_0217150 [Dictyostelium discoideum AX4] (GB:XP_644589.1); contains domain ESOPHAGEAL CANCER ASSOCIATED PROTEIN (PTHR13673) -0.451535842986653 -4.56789360863525 0.00161468612866668 1 5.96398367046285 15.3774502411862 -0.451535842986653 0.104424109147286
AT3G22460_at 6.24184073238673 5.9931752993139 6.39228793522354 6.22767116646753 7.74886560640398 6.93215226508783 5.26845345077769 4.82243671368904 5.16299443502344 5.27122176930258 2.22446248161313 2.21635577859693 3.4983031072583 3.11024695796882 2.5636726413053 3.48397027908801 4.01792272697813 2.91094304947174 5.99726414475715 0.291675282710623 0.285840009421340 0.294984357115392 0.293229906492177 0.289901384631923 0.288384206708341 0.285112121278149 0.287110797027607 0.286004060471252 0.285112121278149 0.295027469107753 0.301848123542383 0.28818459268799 0.29585086549058 0.294208073792741 0.285112121278149 0.307303272107274 0.307679155418509 0.290124637201205 3 0|3 /|+ 7964688 7965691 7965192.714 7963544 7965914 + gene protein_coding_gene FALSE TRUE AT3G22460.1 cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative similar to OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) [Arabidopsis thaliana] (TAIR:AT4G14880.2); similar to Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) (GB:O23733); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926) -0.615078897161064 -4.55964231330636 0.00163290409268221 1 5.9541395737904 10.4435577682418 -0.615078897161064 0.169105913886640
AT4G10000_at 6.99914938190523 6.74877114789853 7.20301653662704 7.29747015239757 7.43934637176589 6.88799982273088 7.16324571553564 6.47931406253198 5.77854853980184 6.41357523945073 7.05407239561549 6.64506437867595 6.68464422979128 6.81468229570867 6.63994656541544 7.16631620291183 7.32395142100341 6.89589802068789 6.07006744267808 0.207735343743436 0.208674027571361 0.214057697498775 0.213910173096715 0.20926691305389 0.214411798554067 0.213986831126616 0.212660401063688 0.236997105843711 0.208864215018503 0.207349227328877 0.207748294062151 0.207349227328877 0.207349227328877 0.218548569825647 0.207349227328877 0.219843490224575 0.215570549561867 0.210575840954819 4 4|0 -|/ 6260726 6261943 6261251.556 6260307 6263178 - gene protein_coding_gene FALSE TRUE AT4G10000.1|AT4G10000.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03880.1); similar to hypothetical protein ABO_1568 [Alcanivorax borkumensis SK2] (GB:YP_693288.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.58750650433093 4.5590597737477 0.00163419863500778 1 5.95344411742876 13.5225236552757 0.58750650433093 0.158923765546961
AT4G10810_at 7.86036168766525 8.1130834981722 8.17323212442849 8.44712562960214 8.413415538815 8.29055094356359 8.0291608494549 8.2756631493791 7.69897262744972 7.40606707415077 8.13765000436772 7.97332636791556 8.00313669452331 8.06450301686625 8.08824181144992 8.00740827901307 7.99388256429643 7.77524899451882 7.30522695870256 0.170020160741643 0.165997415484808 0.164308618692414 0.168320582199924 0.167570591814483 0.166686788876753 0.170023234372369 0.161265139750555 0.185615956760816 0.178850502611538 0.171070984416481 0.161489234345298 0.176237580219285 0.179982091166499 0.170823319789125 0.166298898067481 0.175613278036072 0.175351344115835 0.18215281562681 4 4 - 6645982 6646172 6646101 6645712 6646332 - gene protein_coding_gene FALSE TRUE AT4G10810.1 similar to Os10g0502100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064990.1); similar to Os02g0826400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048586.1) 0.39842479639282 4.55796620543188 0.00163663179801146 1 5.95213841108798 15.9380809793284 0.39842479639282 0.0801945578642283
AT3G15580_at 11.2781197541955 11.3548948776884 11.6701402744493 11.7747521425311 11.7546965198516 11.5532685741499 11.1127251394374 11.1194484748227 11.0270521901705 10.9164842654177 11.3024408430441 10.9415718904122 11.3153622769139 11.1872604747179 10.9869719048347 11.2457943826777 11.0901906512932 11.1215482325698 10.9099709837106 0.0874017590571468 0.0866136827331997 0.092922723368481 0.0875041945779208 0.0866136827331997 0.0910756520424118 0.0866136827331997 0.088049022965558 0.100857946963730 0.0866136827331997 0.0911213348561563 0.0866136827331997 0.0866136827331997 0.0874365350506992 0.0917987632458706 0.0872392814980835 0.0933302007309339 0.0886951276293664 0.0872687404074176 3 0|3 /|- 5274102 5274836 5274364 5273902 5275102 - gene protein_coding_gene FALSE TRUE AT3G15580.1 APG8H (autophagy 8H); microtubule binding Encodes APG8, a component of autophagy conjugation pathway. Delivered to the lumens of vacuole under nitrogen-starvation condition. similar to ATG8H (AUTOPHAGY 8H), microtubule binding [Arabidopsis thaliana] (TAIR:AT3G06420.1); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE82404.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.334820375917243 4.55728729857389 0.00163814431632002 1 5.95132769632189 22.5022865838862 0.334820375917243 0.0414813448096391
AT1G72740_at 7.3409431968167 7.2113723113736 7.17858140393008 6.91300222841735 7.51774942780209 7.06648923492515 7.70117873165487 7.68401770624365 7.92266551427876 7.42439999774656 7.28267247958201 6.94976047434714 7.35282640217957 7.3758130868339 7.30157085433957 7.20834613429722 6.75886108226257 7.42620991367451 7.88258352328132 0.186315937550516 0.190490767770130 0.187968610429688 0.196383765218127 0.189750786191634 0.210613623731597 0.186930760572234 0.195016945626821 0.205055534089003 0.196106522698539 0.187820399490731 0.192959266462390 0.184896938857416 0.185298992053465 0.184745275443920 0.192661294259455 0.194050587184749 0.206194546187727 0.198241568909233 1 1|0 -|/ 27384298 27385619 27384819.125 27383956 27386586 - gene protein_coding_gene FALSE TRUE AT1G72740.1|AT1G72740.2 DNA-binding family protein / histone H1/H5 family protein similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G17520.1); similar to MYB transcription factor MYB107 [Glycine max] (GB:ABH02850.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.425815602208096 -4.55681065789072 0.00163920711263049 1 5.95075846735258 14.8017787294163 -0.425815602208096 0.0933936075254866
AT3G27160_at 10.8495696517178 10.7783333984264 9.88443460922768 9.91985533927977 10.3605392866143 10.5280990821472 10.8645691663334 10.914244456961 11.4744823880600 11.3860484704436 11.5416949564821 11.7721944392161 11.1444175867884 11.3378033782302 12.1479724714413 11.3888531632519 10.8720331410181 11.2235353859083 11.3417779817001 0.123703641345111 0.122351727184117 0.149050897158154 0.1610961695404 0.127056637626996 0.138251020960599 0.126211827341216 0.122351727184117 0.124522842073962 0.122351727184117 0.122351727184117 0.127125385967935 0.127096670710850 0.126778409761770 0.136983043742361 0.128171642420436 0.130168226641944 0.131828748281495 0.122351727184117 3 3 + 10018803 10020067 10019398.429 10018713 10020327 + gene protein_coding_gene FALSE TRUE AT3G27160.1 GHS1 (GLUCOSE HYPERSENSITIVE 1); structural constituent of ribosome GHS1 encodes plastid ribosomal protein S21 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G63300.1); similar to ribosome-like protein [Cucumis sativus] (GB:AAL35983.1); contains InterPro domain Ribosomal protein S21; (InterPro:IPR001911) -0.325326818575808 -4.55362801868644 0.00164632274979269 1 5.94695654191432 21.9271219631851 -0.325326818575808 0.0332306194301642
AT1G70790_at 7.68440398983995 7.12708026779006 7.72040204224191 7.64281508097865 8.04240875979802 7.64311374366867 7.14157838907516 6.54961701340167 6.42910716278764 6.28990565960935 6.78736985006427 6.95920093068539 7.02666221269081 6.7403507484489 7.43540738096907 7.38518030725714 7.09924105732931 6.89132827007265 6.81712408957028 0.196275917228036 0.194925284071387 0.195509119568531 0.193342794592726 0.195357326451333 0.196062234208409 0.199638364021079 0.207154277246059 0.196145816624723 0.195422678497028 0.195112383941091 0.192305472356213 0.193050528949237 0.199271973022397 0.200059071423981 0.199443793130431 0.204957527332018 0.198778610879399 0.193922151710487 1 1|0 +|/ 26704438 26705753 26705401.6 26704074 26706008 + gene protein_coding_gene FALSE TRUE AT1G70790.1|AT1G70790.2 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01540.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.582530974506184 4.55356127427682 0.00164647233110769 1 5.94687679059504 14.2202465268553 0.582530974506184 0.157326035298673
AT3G60820_at 10.5682662609579 10.6961232298208 10.8793770605822 10.9804551419430 10.8096675220784 10.6451554531358 10.5664992621220 10.5442598051484 10.0888800925844 9.9354754796254 10.3502815340934 10.5054226416091 10.3475890400692 10.3588894767396 10.1512222691902 10.3488152483904 10.4743277965422 10.4930679265243 9.81964888150448 0.121073882924445 0.112208741518356 0.116967283678203 0.117243206043061 0.116021053730997 0.118145494153529 0.119882709421583 0.117251288855790 0.117769577794233 0.118430135741060 0.121968278549547 0.116853805837158 0.118845554415699 0.115157770097929 0.124925341955314 0.112208741518356 0.123541631203462 0.114803229907658 0.116886331484804 3 3 - 22483307 22484536 22483793.455 22482744 22484914 - gene protein_coding_gene FALSE TRUE AT3G60820.1|AT3G60820.2 PBF1 (20S proteasome beta subunit F1); peptidase Encodes 20S proteasome beta subunit PBF1 (PBF1). Identical to Proteasome subunit beta type 1 (EC 3.4.25.1) (Proteasome subunit beta type 6) (20S proteasome beta subunit F-1) (TAS-G39.20) (TAS- F22/FAFP98) (Proteasome component C5) (PBF1) [Arabidopsis Thaliana] (GB:P42742;GB:P42741;GB:Q570C3;GB:Q6LAD2;GB:Q9SBI6); similar to PBC1 (20S proteasome beta subunit C1), peptidase [Arabidopsis thaliana] (TAIR:AT1G21720.1); similar to 20S proteasome, A and B subunits [Medicago truncatula] (GB:ABE90866.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.332788580997984 4.54971333562767 0.00165512081765546 1 5.94227761775062 20.8745772050817 0.332788580997984 0.0402600423828633
AT3G54810_at 4.84004895788512 4.92463710157941 5.21118749661567 5.30979710088124 4.09859164812945 4.38904411585985 4.98177848693549 4.93850960903087 4.54951118900784 3.52675650664134 6.18125814709368 5.64415792271084 4.65865458527173 5.65448048388807 5.06074557559739 3.85737398209386 4.20493917532446 4.5489783538439 4.2224073392633 0.202997396181127 0.192636673051109 0.191732579567433 0.194068653148171 0.191732579567433 0.201767983758533 0.194754562704788 0.194300711584975 0.191732579567433 0.197109803856587 0.197136642599476 0.199967661720116 0.200534030898991 0.200730395757231 0.195175584880882 0.195420515080391 0.199659350799402 0.200894728221648 0.194424626951926 3 3 + 20308659 20309167 20308866.455 20307210 20309669 + gene protein_coding_gene FALSE TRUE AT3G54810.1|AT3G54810.2 BME3/BME3-ZF (BLUE MICROPLYLAR END3); transcription factor Encodes a protein containing a GATA type zinc finger domain that is expressed in the embryo axis and involved in germination. Mutants have a reduced rate of germination even when stratified. Identical to GATA transcription factor 10 (AtGATA-10) (GATA10) [Arabidopsis Thaliana] (GB:Q9SV30); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT1G08010.2); similar to AG-motif binding protein-1 [Nicotiana tabacum] (GB:BAC98491.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.353838367385497 4.54953163371556 0.00165553041457407 1 5.94206037593084 9.37464025121405 0.353838367385497 0.0555701780174433
AT3G51880_at 9.26711080795976 9.30282963899727 9.54391431944098 9.48325427900285 9.7062327661607 9.72350751016606 9.37025334859466 9.36595423182505 9.17806273461148 8.99022498372646 9.53884593553703 9.59111754231596 9.53873792989707 9.3911914461546 9.05825388360197 9.56765635795097 9.57792545812189 9.0655971690435 9.08123301355407 0.0850397675497339 0.0819670572632164 0.0842431847606247 0.0831344066069673 0.0885197976294722 0.0837948385688268 0.0845645634895438 0.0858198460753018 0.081891908772347 0.0846232145465628 0.0871426519851991 0.085785551054639 0.083845059752278 0.0846243383000772 0.0868516638473938 0.0838370231082015 0.0854086072879647 0.0880572049946448 0.0848159555671493 3 3|0 -|/ 19258274 19259402 19258958.222 19257968 19260101 - gene protein_coding_gene FALSE TRUE AT3G51880.1|AT3G51880.2|AT3G51880.3 HMGB1 (HIGH MOBILITY GROUP B 1); transcription factor|HMGB1 (HIGH MOBILITY GROUP B 1) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated.|Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB3 (HIGH MOBILITY GROUP B 3), transcription factor [Arabidopsis thaliana] (TAIR:AT1G20696.1); similar to HMG-protein [Plantago major] (GB:CAJ38371.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.3103411749395 4.54936758795599 0.00165590030452093 1 5.94186423858416 18.7200517590810 0.3103411749395 0.0125656927632309
AT4G16720_at 10.9104041123777 11.1119173306258 10.6886763706357 10.7496799373299 10.6234196379195 10.7244814680012 11.2513581285298 11.3590585579498 10.3835147285748 10.6125506509652 10.4332008373567 10.6268712950386 10.2244168980385 9.86993555715082 10.8907935965622 10.1423803713644 10.4009925793978 9.99964323274127 10.6176008253184 0.0815374920833793 0.0801757030344104 0.0833943856608846 0.0821502039342015 0.0825653102493502 0.0814018405971422 0.0802946179631978 0.0842053085206653 0.0886251476182285 0.0844782446957022 0.0808644330189967 0.0801757030344104 0.0817100262258586 0.0894524027878752 0.0863817159438971 0.0806371287343225 0.0864731454146285 0.0867216435287135 0.0827525727509543 4 4|0 -|/ 9400298 9401124 9400624.4 9399982 9401404 - gene protein_coding_gene FALSE TRUE AT4G16720.1 60S ribosomal protein L15 (RPL15A) Identical to 60S ribosomal protein L15-2 (RPL15B) [Arabidopsis Thaliana] (GB:Q8VYF1;GB:O23582); Identical to 60S ribosomal protein L15-1 (RPL15A) [Arabidopsis Thaliana] (GB:O23515); similar to 60S ribosomal protein L15 (RPL15B) [Arabidopsis thaliana] (TAIR:AT4G17390.1); similar to 60S ribosomal protein L15 [Brassica oleracea] (GB:ABD65137.1); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Ribosomal protein L15e; (InterPro:IPR000439) -0.337989808947849 -4.54853067530901 0.00165778876159332 1 5.9408635284861 21.3580834583757 -0.337989808947849 0.0445063114426479
AT4G02230_at 10.6576696246790 10.7685021486959 10.3862904983505 10.3717900548628 10.7765067032679 10.6092129470486 10.5820045068505 10.6332594917884 10.1821274114727 10.3502896774776 9.77667992195845 9.69205706437254 9.9911260076995 9.70130138982896 10.0063464901892 9.5086818869354 9.91166927589319 9.71372854723213 10.4234779756285 0.0915791553893394 0.0941798395613185 0.0923164333240005 0.091914049004693 0.0934961598225896 0.0927132923972332 0.0901029617616096 0.0893761568442547 0.095025031828631 0.0893761568442547 0.0968897895156685 0.0917661796142025 0.0893761568442547 0.0950056951956686 0.094989780440956 0.0961619703338743 0.100182449972355 0.0922233590100718 0.0893761568442547 4 4|0 -|/ 979527 980586 979972.556 979170 980670 - gene protein_coding_gene FALSE TRUE AT4G02230.1 60S ribosomal protein L19 (RPL19C) Identical to 60S ribosomal protein L19-3 (RPL19C) [Arabidopsis Thaliana] (GB:P49693;GB:O81422;GB:Q9M114); similar to EMB2386 (EMBRYO DEFECTIVE 2386), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G02780.1); similar to Ribosomal protein L19e [Medicago truncatula] (GB:ABE84969.1); contains InterPro domain Ribosomal protein L19e; (InterPro:IPR000196) -0.327670878650127 -4.54699870263816 0.00166125161512167 1 5.93903139575188 20.6513197525463 -0.327670878650127 0.0359305766632121
AT2G39850_at 6.38451781644244 6.52760434164541 7.65808486626044 7.766395683267 8.46849754910012 8.24083118020872 9.00928047089678 8.83811665890569 8.00227183277088 8.67080848991413 8.83889920685923 9.3727846888392 9.02911421880911 8.8683555003475 8.9694867017856 9.1272571988755 8.66703256458022 8.72519039916395 9.06082581847395 0.174527202785577 0.171308238680015 0.175626331947797 0.176152396388825 0.168002215889840 0.167173552428496 0.171892824759795 0.166327822813517 0.177294521353804 0.166692848794819 0.165426683974003 0.165699539041668 0.160123132838196 0.177498517101677 0.170593317094522 0.163532874104370 0.163952461629772 0.167955629948212 0.163130881504848 2 0|2 /|+ 16640621 16641118 16640904.5 16637551 16641331 + gene protein_coding_gene FALSE TRUE AT2G39850.1 subtilase similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G59190.1); similar to subtilisin-like protease C1 [Glycine max] (GB:AAN12272.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.357684421962189 4.54455317645927 0.00166679564051159 1 5.936105837400 16.6255329576544 0.357684421962189 0.0582590557070385
AT1G74790_at 5.58269825564958 6.32182013807792 4.56882121132379 4.34520252662274 5.18976603366951 5.28937649432668 5.31991271060987 5.3812757703272 6.7997625132867 5.68202917846266 6.31453108445458 6.86930121072514 5.55316716021903 5.79979790392535 5.59555192371555 5.40937213528401 4.86228730237281 5.83382007024994 5.58970966276473 0.285529563141598 0.266319792334968 0.274336515932099 0.279903208924841 0.270358665669292 0.27419041260144 0.266319792334968 0.266319792334968 0.302022405047553 0.273426747816487 0.266319792334968 0.268429445210875 0.266319792334968 0.278327876412531 0.267186939429412 0.268642174037857 0.287298784846417 0.272476598129418 0.270793210869875 1 1 + 28104657 28105289 28105003.818 28102471 28105557 + gene protein_coding_gene FALSE TRUE AT1G74790.1 Identical to HIPL1 protein precursor (HIPL1) [Arabidopsis Thaliana] (GB:Q9SSG3); similar to HIPL2 (HIPL2 PROTEIN PRECURSOR) [Arabidopsis thaliana] (TAIR:AT5G62630.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39970.1); similar to hypothetical protien [Hordeum vulgare subsp. vulgare] (GB:AAV49993.1); similar to glucose/sorbosone dehydrogenases-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30151.1); similar to unnamed protein product [Triticum tur (GB:CAJ13560.1); contains InterPro domain Soluble quinoprotein glucose dehydrogenase; (InterPro:IPR011041) -0.523620169075095 -4.54410203480994 0.00166782056142860 1 5.93556602307749 11.1516403344291 -0.523620169075095 0.135159364225426
AT3G03020_at 5.40047865301717 5.16433185111623 5.58873580609621 5.50037452048333 6.13897419980566 5.61042190331899 4.83702942232379 4.31923268771307 4.9658804141348 4.42281961531251 5.16928106004297 4.94124024945812 4.89182508295298 4.57480507519536 5.05872732211011 5.02655691290581 4.70847377481142 4.98786341962274 4.56608641519939 0.170572670609838 0.167706483549408 0.170884140541877 0.171931253652565 0.184578006676338 0.174805190556298 0.167586465960745 0.164642196073885 0.184635580787717 0.182497305501281 0.172094608761365 0.174319176357233 0.173847834429513 0.170303935314601 0.169221558016381 0.166489571704628 0.171043137177576 0.170773668926852 0.165829255941016 3 3 + 681086 681255 681180.909 680951 682006 + gene protein_coding_gene FALSE TRUE AT3G03020.1|AT3G03020.2 unknown protein 0.523804792236014 4.54311897658026 0.00167005626711723 1 5.93438961562916 10.1056684273275 0.523804792236014 0.135276734104841
AT2G38880_at 6.3035451356077 6.25933248558368 6.40070256169873 6.47020266546196 6.57277980735374 6.39065905250693 6.13827656093916 6.34581528510244 5.73826149741416 5.52244379096092 6.37459275612013 6.40198757211666 6.37075441093538 6.09010665815656 5.87477672092067 6.2641555333739 5.98890525633397 5.48897652338152 5.58097212065723 0.199381831161157 0.213212623550471 0.217197560485100 0.223742149351322 0.207203194971117 0.209172563583189 0.202835370676870 0.209968899129341 0.213741394517818 0.202482067896791 0.201701720289253 0.203910373140439 0.206717711422691 0.214037901824007 0.209488397335373 0.200795713161896 0.215680227290092 0.207725487271541 0.203189674795064 2 2|0 +|/ 16245774 16246742 16245956.125 16245554 16247912 + gene protein_coding_gene FALSE TRUE AT2G38880.1|AT2G38880.2|AT2G38880.3|AT2G38880.4|AT2G38880.5|AT2G38880.6 HAP3A (Heme activator protein (yeast) homolog 3A); transcription factor|HAP3A (Heme activator protein (yeast) homolog 3A) Subunit of CCAAT-binding complex, binds to CCAAT box motif present in some plant promoter sequences Identical to Nuclear transcription factor Y subunit B-1 (AtNF-YB-1) (Transcriptional activator HAP3A) (NFYB1) [Arabidopsis Thaliana] (GB:Q9SLG0;GB:O23633); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G53340.1); similar to CAAT-box DNA binding protein subunit B (NF-YB) [Zea mays] (GB:CAA42234.1); similar to Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box DNA-binding protein subunit B) (GB:P25209); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124)|Identical to Nuclear transcription factor Y subunit B-1 (AtNF-YB-1) (Transcriptional activator HAP3A) (NFYB1) [Arabidopsis Thaliana] (GB:Q9SLG0;GB:O23633); similar to CCAAT-box binding transcription factor subunit B (NF-YB) (HAP3 ) (AHAP3) family [Arabidopsis thaliana] (TAIR:AT4G14540.1); similar to CAAT-box DNA binding protein subunit B (NF-YB) [Zea mays] (GB:CAA42234.1); similar to Nuclear transcription factor Y subunit B (NF-YB) (CAAT-box DNA-binding protein subunit B) (GB:P25209); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.344866557093504 4.54307160263977 0.00167016408824808 1 5.93433291970653 12.2205013935792 0.344866557093504 0.0498641674094798
AT1G27520_at 7.75591205316515 7.65233340651224 7.43734396187372 7.29501787795554 8.07171118110718 7.46935581820265 7.94484392261148 7.56926255630641 7.45667203548459 8.01960928007931 7.10286011146645 6.81140429478265 7.10567437377154 7.19803537656255 6.58892799817263 7.60782798569788 7.34121054362183 7.11754264194421 8.37170764777422 0.145261936954778 0.147456987187853 0.153619125013699 0.147503921610041 0.148387189982131 0.146220833745509 0.149897711831439 0.148292110084696 0.154495803911742 0.145261936954778 0.160264599021806 0.150361067519262 0.150236015636426 0.146822135974174 0.158152039283596 0.147369512259190 0.157406100121403 0.155713952296014 0.147793300720095 1 1|0 +|/ 9561101 9562050 9561658.1 9558622 9562368 + gene protein_coding_gene FALSE TRUE AT1G27520.1 glycoside hydrolase family 47 protein similar to glycoside hydrolase family 47 protein [Arabidopsis thaliana] (TAIR:AT5G43710.1); similar to Os02g0741300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048080.1); similar to Glycoside hydrolase, family 47 [Medicago truncatula] (GB:ABE91840.1); similar to Glycoside hydrolase, family 47 [Medicago truncatula] (GB:ABE82395.1); contains InterPro domain Glycoside hydrolase, family 47; (InterPro:IPR001382) -0.501187506778807 -4.53627291488964 0.00168571578516026 1 5.92619221786376 15.1787301323160 -0.501187506778807 0.126564211466060
AT4G16450_at 9.69659658836778 9.89441754869122 9.94803763658654 9.83598326801498 9.77010516709147 9.61486448468995 9.41110250941863 9.69604704448887 9.4178602394946 9.4747231630955 10.0326977127782 10.1690283499311 9.90902474012258 10.0276780643853 10.1870546076765 9.98553900343497 9.77948052856576 9.91002423970295 9.21358244034107 0.108450826571662 0.105333086470371 0.103062418909590 0.108906916633905 0.111552487919987 0.109374232219361 0.104311149529458 0.102605389347519 0.107462021244589 0.110590957492022 0.106250693586215 0.100411489568112 0.106217944595746 0.108455770869304 0.104956085429906 0.105028383530045 0.1081526035056 0.108139625047401 0.103907925779886 4 4|0 +|/ 9280156 9280493 9280344.5 9280096 9280740 + gene protein_coding_gene FALSE TRUE AT4G16450.1 similar to Os08g0431500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061863.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99342.1) 0.374525337267529 4.53605912782848 0.00168620734052679 1 5.92593609525276 19.4177882076529 0.374525337267529 0.0685659899422986
AT1G09910_at 7.4702248854051 7.52401368335582 7.87355975636964 7.79909606099639 8.0181842219883 8.01221873976478 7.00720228251105 6.32595090105973 6.59811412073224 6.96923859715342 6.96286854340214 6.63026400840531 6.89972420205576 6.95540236510276 6.28899714886077 7.09981357158008 7.48862208256547 7.0294861569419 6.82981291850117 0.194893111076781 0.185688776476784 0.196394636829244 0.193567271377568 0.190496724075062 0.200316975720502 0.189799697986470 0.194918930683048 0.207123950511820 0.187840425551152 0.19172973685694 0.188203709551702 0.185688776476784 0.19594209396577 0.207551006837097 0.186406429488514 0.192713474578786 0.210055856296394 0.197404914824628 1 1 - 3220161 3220833 3220466.273 3220037 3224543 - gene protein_coding_gene FALSE TRUE AT1G09910.1 lyase similar to lyase [Arabidopsis thaliana] (TAIR:AT2G22620.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT1G09880.1); similar to lyase [Arabidopsis thaliana] (TAIR:AT4G37950.1); similar to putative MYST1 [Oryza sativa (japonica cultivar-group)] (GB:BAD10227.1); similar to LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96404.1); similar to putative rhamnogalacturonate lyase [Triticum tur (GB:ABI15897.1); contains InterPro domain Rhamnogalacturonate lyase; (InterPro:IPR010325) 0.48212940221609 4.53183319234304 0.00169595574079675 1 5.92087161666557 14.3630325524280 0.48212940221609 0.118965120357061
AT1G30360_at 11.0067814635983 11.0548700096568 10.8895797581603 11.0000202563596 11.3472511975788 11.1735088002695 10.7210701056629 10.6394615476825 10.6128231067870 10.5394996274868 11.1223726319480 10.7414363249888 10.9652416806354 11.0381381477596 10.8473020414047 11.2706256497476 10.5489574528996 10.8741170615014 10.3855228819065 0.0676564901280158 0.0669433997696902 0.0687558722877485 0.0682631282891193 0.0697417954062816 0.072116868865056 0.0681114703965164 0.069173615726006 0.0723132080860574 0.072269081460042 0.0703992715113038 0.0671871857664174 0.0687862143000866 0.0713730690376259 0.0673875726986791 0.0669433997696902 0.0734946383858924 0.0704687336846602 0.0691343300782326 1 1 + 10718161 10718731 10718418.727 10715647 10718979 + gene protein_coding_gene FALSE TRUE AT1G30360.1 ERD4 (EARLY-RESPONSIVE TO DEHYDRATION 4) similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G32090.1); similar to Os07g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058898.1); similar to early-responsive to dehydration stress protein [Picea abies] (GB:AAX92695.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.330226444954572 4.53142823450544 0.00169689308626796 1 5.92038613452724 21.6983874319981 0.330226444954572 0.0392174054060328
AT3G07630_at 6.73574204133624 6.93816391260001 7.098357367686 6.59654741444853 7.28530318009606 7.25043400924605 6.32191035984122 6.32546254479885 5.54167761673628 5.4927711816036 5.72262711344769 5.9320965801494 6.24863119060501 5.50547967991024 6.3420896600134 5.81157510739232 5.7469725012377 5.44286283563174 5.38344528278078 0.24654848096356 0.249424773093352 0.247488164383864 0.260740942826607 0.242993414611897 0.259497660741091 0.242993414611897 0.242993414611897 0.252399792482201 0.244476644290833 0.242993414611897 0.242993414611897 0.242993414611897 0.259906822518957 0.248420010524666 0.242993414611897 0.255165667283616 0.259572406489189 0.249254079581883 3 3|0 +|/ 2436365 2437504 2436998 2435451 2437971 + gene protein_coding_gene FALSE TRUE AT3G07630.1|AT3G07630.2 prephenate dehydratase family protein similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G11790.1); similar to Prephenate dehydratase with ACT re (GB:ABE81566.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.424375625699984 4.53118037925125 0.00169746706616158 1 5.92008897959837 12.4773267007176 0.424375625699984 0.0938359006821157
AT2G37500_at 6.052899905292 5.94703739868534 5.67953063498982 5.44127089931781 5.78508319866695 5.40297811181212 7.01271569400063 6.94567184442001 5.27804618928393 6.42789044022582 6.28478853797649 6.51672190490396 6.11035104076442 5.71987497964625 6.37229415980841 6.36824428885545 6.03012193490169 5.72210894161759 6.3617374720554 0.229338383668816 0.222967485573164 0.229367033063484 0.228787927808014 0.229932993520378 0.243589164580635 0.227649383506990 0.240165413235612 0.237005866447487 0.223886516013777 0.22697544704696 0.228212868012132 0.224756097394093 0.241569450632819 0.228047084528175 0.225236278704473 0.236299612651451 0.237580364131360 0.227116911798597 2 2|0 -|/ 15747324 15747896 15747633.25 15746861 15749916 - gene protein_coding_gene FALSE TRUE AT2G37500.1 arginine biosynthesis protein ArgJ family similar to glutamate N-acetyltransferase [Citrullus lanatus] (GB:BAE46903.1); contains InterPro domain Arginine biosynthesis protein ArgJ; (InterPro:IPR002813) -0.397180154849292 -4.52799807615232 0.00170485523980307 1 5.91627271422378 12.1149590896053 -0.397180154849292 0.0808877838269688
AT2G21370_at 6.75564904664516 6.81149025674965 5.88923012519137 5.84633601549109 7.07106589853104 6.3049976805375 7.2071167515084 7.22489176831119 7.2281002677032 7.46493733817249 7.25939584546982 7.5887209974788 6.80736711643248 7.47262072019688 7.22688025325845 7.36061155331937 6.69461494520083 6.98151564236373 7.76073002317057 0.211226255573631 0.195234814442771 0.210037787302842 0.204409938319839 0.195838274589317 0.212140187252795 0.201411858610523 0.202102252764502 0.205813116303741 0.205276677802058 0.201751392506050 0.198186249925121 0.206666619546581 0.200665226552087 0.208959165081001 0.200107423325199 0.206903136849676 0.20278915522568 0.196805774009690 2 2|0 -|/ 9144699 9145568 9145283.6 9144534 9147161 - gene protein_coding_gene FALSE TRUE AT2G21370.1|AT2G21370.2 xylulose kinase, putative similar to xylulose kinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC20723.1); contains InterPro domain Carbohydrate kinase, FGGY; (InterPro:IPR000577) -0.516251425666444 -4.5237542913675 0.001714761822411 1 5.91118065796873 13.9681247398192 -0.516251425666444 0.133166054205703
AT3G07360_at 7.9582712629265 7.5872645665648 8.56575362569149 8.498582780051 9.39371578888217 9.1025289774446 9.06079669355053 8.68378059452641 8.09075487976006 8.54183295276245 9.21317470032441 8.71651593399387 9.21777874199792 9.06099846308785 8.19585483538235 8.7071678839992 9.16479906499239 8.22549988882593 8.81627806746087 0.152077629460032 0.178309472021860 0.159942026023046 0.158649002091885 0.159543295782303 0.154958284370953 0.152985286781268 0.155445473017739 0.166853838947395 0.158473572472511 0.156801424544919 0.151826127610623 0.155944759341958 0.166622548530653 0.165905889617488 0.162044823364875 0.153306823653605 0.167326091693805 0.163097930762259 3 3 + 2356028 2356593 2356208.455 2354725 2356860 + gene protein_coding_gene FALSE TRUE AT3G07360.1|AT3G07360.2|AT3G07360.3 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18320.1); similar to U box [Medicago truncatula] (GB:ABE90370.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613)|similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18320.1); similar to U box [Medicago truncatula] (GB:ABE90370.1); contains InterPro domain Armadillo; (InterPro:IPR000225) 0.448692701353147 4.52273415339459 0.00171715245289343 1 5.90995612418855 17.2541762807397 0.448692701353147 0.105135342798654
AT4G39640_at 8.30960716736318 8.22217756286479 7.77300646332144 7.7951973208876 8.31563638248663 8.0495779440974 8.7748417606925 8.88771111253785 9.33824074149867 8.91695652640585 9.32778791108277 9.06839304004426 9.28238094978379 9.10952907155513 8.93290539346367 8.92384851648739 8.68511222557296 9.06708489103419 9.27877331624449 0.132716574915085 0.129685586674089 0.139252568887749 0.141526268585817 0.124938538405516 0.134677489198083 0.128505386609805 0.127191286001642 0.141397126527213 0.125357889721368 0.127972747765746 0.125746462209844 0.128611686171963 0.13672131031831 0.131527745051601 0.128246585335259 0.133321880925974 0.13453851612399 0.129281357550918 4 4 + 18402083 18402739 18402436.636 18399949 18402955 + gene protein_coding_gene FALSE TRUE AT4G39640.1|AT4G39640.2 GGT1; gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase|GGT1; gamma-glutamyltransferase The gene encodes a gamma-glutamyltransferase (AKA gamma-glutamyl transpeptidase, EC 2.3.2.2) that is located in vascular tissues (predominantly phloem) of leaves and is involved in the degradation of glutathione. The encoded enzyme also mitigates oxidative stress by metabolizing GSSG (oxidized form of GSH - glutathion) in the apoplast. similar to gamma-glutamyltransferase/ glutathione gamma-glutamylcysteinyltransferase [Arabidopsis thaliana] (TAIR:AT4G39650.1); similar to H0523F07.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67025.1); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAC56855.1); similar to gamma-glutamyl transferase [Raphanus sativus] (GB:BAC45233.1); contains InterPro domain Gamma-glutamyltranspeptidase; (InterPro:IPR000101) -0.346794909002313 -4.52041023599606 0.00172261184465528 1 5.9071658828199 17.3797796865786 -0.346794909002313 0.0523938401116883
AT2G41290_at 5.07873154390127 5.38666482801176 5.5346776442347 5.90665940423402 6.56936091064557 6.29061331928155 8.35435968178504 8.33795225528405 6.26480358258789 7.25691320447648 6.7876789440149 6.97500770206426 7.10335658806075 6.76409841803575 6.36269031979157 7.13881140973712 7.37411720409495 6.62507753718815 7.58463974865457 0.222138157622202 0.204892863181308 0.204494184223778 0.206620687748781 0.20830279190082 0.227800611992767 0.216595918849739 0.213750828529390 0.228662552900641 0.214047539071201 0.203410321800914 0.203410321800914 0.205311115236752 0.227583311804501 0.204795877017582 0.206813059968825 0.208766175848316 0.204994420365417 0.208115508874694 2 2 - 17217683 17218117 17217913.545 17217533 17220037 - gene protein_coding_gene FALSE TRUE AT2G41290.1 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57030.1); similar to Strictosidine synthase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95779.2); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.429098335423059 -4.51904525109873 0.00172582721972466 1 5.90552654150058 13.3957809203954 -0.429098335423059 0.0965332917875837
AT4G34740_at 6.16486521652054 6.52998602575174 4.55023866723203 5.24261845833788 5.42901328127155 5.52037538436448 6.56220132777469 6.79403363539199 6.43918797826111 5.45994812087453 6.15701485346433 6.62101229846079 5.69037734088379 6.07618986183845 6.19542797718758 5.97505618617042 5.88296480725238 5.97458265352196 5.56132163194683 0.26499570595192 0.246930846684732 0.242080300531484 0.245037167425754 0.242968746460676 0.241288240294224 0.244182056905823 0.256102582635303 0.271042203426376 0.241185127218840 0.244678865121942 0.241005047503531 0.237073017667041 0.248565524085604 0.253343935598768 0.241765799679048 0.249931927288647 0.246742595165635 0.244099443212149 4 4 - 16574984 16575439 16575168.727 16574582 16576676 - gene protein_coding_gene FALSE TRUE AT4G34740.1 ATASE2/ATD2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2); amidophosphoribosyltransferase Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. similar to ATASE3 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 3), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G38880.1); similar to ATASE (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 1), amidophosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT2G16570.1); similar to 5-phosphoribosyl-1-pyrophosphate amidotransferase [Nicotiana tabacum] (GB:AAR06289.1); similar to Purine/pyrimidine phosphoribosyl transferase [Medicago truncatula] (GB:ABE79947.1); similar to phosphoribosylpyrophosphate amidotransferase [Vigna unguiculata] (GB:AAC24007.1); contains InterPro domain Amidophosphoribosyl transferase; (InterPro:IPR005854); contains InterPro domain Glutamine amidotransferase, class-II; (InterPro:IPR000583); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) -0.537892216619140 -4.51351948964294 0.00173891007546836 1 5.89888668714646 11.7950319117681 -0.537892216619140 0.142157452702694
AT1G19330_at 6.8714124898993 7.23283269779096 5.68547029665855 5.3528114634756 6.60617581053372 6.57267784585799 6.91881526591805 7.10423768600375 7.12187893515066 6.71138072317905 6.97205938211635 7.75235320982844 7.3489058877908 7.4661281764946 6.86021348372425 7.27671270775303 6.90462103656562 7.21766356275646 7.40891064831354 0.176454501474524 0.159524815820294 0.166347949348666 0.199681619099991 0.163510661942179 0.159975858762519 0.156797528329724 0.162919524752498 0.155835896219114 0.157119962246786 0.160196976275184 0.160542483341326 0.155771465387383 0.157901603796205 0.163620632892840 0.154926501190665 0.165057879947987 0.156479128700287 0.160094310131892 1 1|0 -|/ 6680851 6683111 6681620.2 6680554 6683520 - gene protein_coding_gene FALSE TRUE AT1G19330.1|AT1G19330.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75060.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69763.1) -0.416715967720304 -4.51304806741104 0.00174003116222237 1 5.89831996252279 13.6958320027305 -0.416715967720304 0.0910455130999317
AT4G02510_at 9.5562212070393 9.60868645221903 9.41874966588849 9.55149721853358 9.67613947303338 9.29854794031093 9.69211510033358 9.8284847645237 9.69629420590345 10.0370443438062 9.16528482441128 9.42123433301014 9.45070607719196 9.16374622689975 9.34828278652805 9.62025671580016 9.18245989002395 9.17358424055775 9.95065075268874 0.106247033512535 0.105756858938393 0.112534507673955 0.104163805393212 0.101291057778784 0.109019439467956 0.105672426515796 0.103338127371510 0.105531810038285 0.102009143702835 0.105390997311576 0.0969221249273118 0.0972635401163075 0.101064151545237 0.098301711467035 0.0969221249273118 0.105435741763208 0.103044922656095 0.104436676437359 4 4 + 1108773 1109305 1109086.091 1104766 1109600 + gene protein_coding_gene FALSE TRUE AT4G02510.1 TOC159 (translocon outer membrane complex 159) An integral membrane GTPase that functions as a transit-sequence receptor required for the import of proteins necessary for chloroplast biogenesis. Located in the outer chloroplast membrane. similar to ATTOC132/TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132), transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G16640.1); similar to ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120), GTP binding / protein translocase [Arabidopsis thaliana] (TAIR:AT3G16620.1); similar to chloroplast outer envelope protein 86 [Pisum sativum] (GB:CAA83453.1); similar to AAA ATPase; AIG1 [Medicago truncatula] (GB:ABE87459.1); similar to chloroplast protein import component Toc159 [Pisum sativum] (GB:AAF75761.1); contains InterPro domain Chloroplast protein import component Toc86/159; (InterPro:IPR005690); contains InterPro domain AIG1; (InterPro:IPR006703) -0.382056010291938 -4.51276272159887 0.00174071012032742 1 5.89797691190952 19.1839839715364 -0.382056010291938 0.073735618374776
AT1G11280_at 6.22426696274413 6.23860019706214 5.22859270069298 5.61313116880635 5.39598684860845 5.42850460543867 5.93724075551208 6.3778771240849 5.22516956993375 5.77897315894482 5.63220858044077 6.3301987545722 5.90880518798613 6.14362130675954 5.67603353852098 5.6533265136559 5.32713152715379 4.9849986889499 6.41824818994626 0.236410976714936 0.233744340692571 0.230677591817796 0.237208116271844 0.230523110808067 0.249493052975973 0.230523110808067 0.237433795447777 0.245024646786518 0.234790989107945 0.234346778414636 0.234953503474372 0.234188957032047 0.236128377061960 0.237934496784634 0.230723097637456 0.238436390886722 0.240238471577387 0.238368096644763 1 1|0 -|/ 3787495 3787917 3787658.1 3787334 3790876 - gene protein_coding_gene FALSE TRUE AT1G11280.1|AT1G11280.2|AT1G11280.3|AT1G11280.4 S-locus protein kinase, putative|carbohydrate binding / kinase similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61480.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61390.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G61380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.439182778158786 -4.51200819733074 0.0017425068291024 1 5.89706973119141 11.5627771213003 -0.439182778158786 0.101394836249782
AT2G27720_at 10.0309417510435 10.4885674173989 9.74787092856239 9.7027981578601 10.1436231308188 9.83726118307893 10.2841792429084 10.3763560013918 10.3351128693951 10.3558565028105 10.0097221462896 10.3826255121445 9.72981420827437 9.83767646629922 10.4467657060361 9.3874762322596 9.57200601681404 9.6025766380596 10.1860296038099 0.111236041900426 0.105878495075983 0.107768501951378 0.112136009370843 0.107932757570640 0.106474261005631 0.104627445864559 0.104175697452800 0.118002738244839 0.107610725945972 0.104247818584827 0.101735656288308 0.103115472029632 0.107364303850321 0.104289420626491 0.109635119303240 0.105924815293690 0.113470553110413 0.106860880771258 2 2 + 11825774 11826421 11825995 11825568 11826655 + gene protein_coding_gene FALSE TRUE AT2G27720.1 60S acidic ribosomal protein P2 (RPP2A) Identical to 60S acidic ribosomal protein P2-1 (RPP2A) [Arabidopsis Thaliana] (GB:P51407;GB:Q9ZUX3); similar to 60S acidic ribosomal protein P2 (RPP2B) [Arabidopsis thaliana] (TAIR:AT2G27710.3); similar to 60s acidic ribosomal protein-like protein [Solanum tuberosum] (GB:ABA40434.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.429186439669316 -4.51054960376547 0.00174598577408470 1 5.89531574152578 20.1581576555215 -0.429186439669316 0.0969425911303468
AT3G22290_at 6.15274669964904 6.14876900982113 6.09075614475772 6.31739687704793 6.73365417650006 6.49597664971315 5.86349420623468 5.95113795966204 5.29772360186787 5.59156711486786 5.96531272574407 5.95750436963509 6.09957468851023 5.850238609972 5.42813267929006 5.76129973823455 5.79826584936629 5.83427816985798 5.6270632205202 0.180621142641208 0.166116847973739 0.174528022955422 0.171528501539992 0.168501663409322 0.176581721852089 0.173727170179989 0.172286873321832 0.180895138557327 0.172305769652806 0.166116847973739 0.175617284470695 0.167991655565455 0.167706495563902 0.179430639503793 0.170156525517048 0.173720322066077 0.171963273887868 0.169764615888692 3 3|0 +|/ 7882091 7885208 7883856.818 7881568 7885586 + gene protein_coding_gene FALSE TRUE AT3G22290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36050.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_792057.2); similar to Os03g0784400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051473.1); similar to Os04g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052965.1); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) 0.355891767285314 4.51026563176127 0.00174666395692399 1 5.89497421451772 11.8903800485457 0.355891767285314 0.0588268467876529
AT4G39460_at 7.49338480599556 7.64531248223257 6.55108228493506 6.188883896628 6.89887744021012 6.78489865089676 7.30625724069903 7.36573819890267 7.46426160755323 7.80838441487644 7.68404651132405 8.30089520739696 7.68398680145678 7.53890947500698 8.38192367749304 7.9548545677784 7.31416820888194 7.63591922047282 7.88873899132233 0.189456789612652 0.179351657014197 0.192849658622789 0.193799029968342 0.187601023667451 0.202364907923987 0.174842779327726 0.176754329035598 0.196074885389143 0.183262029039194 0.179858524815789 0.180470146650052 0.178852968574369 0.180670476536665 0.185739438798694 0.173146348160655 0.186463216164938 0.186431195197090 0.179384193020800 4 0|4 /|- 18356117 18357333 18356782.143 18355987 18358887 - gene protein_coding_gene FALSE TRUE AT4G39460.1 SAMC1/SAMT1 (S-ADENOSYLMETHIONINE CARRIER 1, SAM TRANSPORTER1); S-adenosylmethionine transporter/ binding Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway. similar to SAMC2 (S-adenosylmethionine carrier 2), binding [Arabidopsis thaliana] (TAIR:AT1G34065.1); similar to Os07g0295000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059405.1); similar to Os05g0361900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055312.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_502002.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.377680663157134 -4.50956388044457 0.00174834110048225 1 5.89413017091382 14.795454190051 -0.377680663157134 0.0715197135768388
AT1G22060_at 7.42471528567972 7.41947557132185 6.587912463586 6.11396295924177 6.94589479688018 6.7045142210209 6.97622564511416 6.69532648617879 7.68158424659986 7.47256355441168 7.95329069883771 7.5539970692149 6.8351647137649 7.4057463930293 7.00609572803988 7.20641678416996 6.42209679060691 7.34078369769134 7.53752817859905 0.212749628487895 0.207367107888420 0.222903681749059 0.229321169341656 0.211267918406980 0.216354493025863 0.214328155285960 0.209068867137310 0.231904735309829 0.207367107888420 0.215310392660968 0.207367107888420 0.213403389730254 0.223524441952385 0.215674470056900 0.207367107888420 0.238358614216766 0.21332806565063 0.211364650070059 1 1|0 -|/ 7773367 7774234 7773656.111 7773052 7780575 - gene protein_coding_gene FALSE TRUE AT1G22060.1 similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G22000.1); similar to putative myosin [Oryza sativa (japonica cultivar-group)] (GB:AAO72668.1); similar to Os10g0363700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064442.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.44465382283779 -4.50580088248775 0.00175736411678579 1 5.8896026436552 14.2481739174394 -0.44465382283779 0.104095581984099
AT3G15840_at 12.3265219727537 12.4243332312134 12.7412597169125 12.6579132730311 12.8974359815824 12.5080902569096 12.4249286158021 12.2798932538051 12.1795734787036 12.2566099393843 12.7257347850749 12.3972772430187 12.6948037358227 12.6367074139877 12.2153165327890 12.5708555723134 12.7144624185845 12.6433637795184 11.9958225672965 0.087666750584026 0.0833098166738944 0.0858054512680113 0.085080445833462 0.0828545366271402 0.0904277915884479 0.0821391816095086 0.0838518959963882 0.090878545686806 0.0830147415925854 0.0846643612420588 0.0829168744502497 0.0823477117217227 0.0917082287929705 0.0842900795196675 0.0821391816095086 0.0892035925631621 0.0829277285851084 0.085014963619574 3 3|0 -|/ 5356795 5357861 5357227.3 5356644 5358507 - gene protein_coding_gene FALSE TRUE AT3G15840.1|AT3G15840.2|AT3G15840.3 similar to Os03g0586500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050569.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97352.1) 0.384034364362908 4.50224872484531 0.00176592766629971 1 5.88532644881132 24.8919556278847 0.384034364362908 0.0752616745461203
AT2G19740_at 9.27247943077107 9.43291531649294 8.79208151120089 9.01636872005717 9.1902396661609 9.17526731743496 8.6683207792672 8.9762563598891 8.51156015474252 8.57694725337937 7.98342780812976 8.0726780360994 7.86191081225758 8.03736900222864 8.07160621818277 7.6400636929908 8.00051415188386 7.57799905975807 8.75953929468078 0.168226043332453 0.168135389690076 0.164372123312528 0.164977388590529 0.164107335315884 0.172461598229353 0.169711815384014 0.172309151630736 0.174412801313764 0.164820514461857 0.178897373489911 0.167670380400183 0.179572140284417 0.178781662288572 0.174858006768785 0.180220386071362 0.178328392041626 0.186459204531498 0.170907531720752 2 2|0 +|/ 8520686 8521389 8521171.5 8520595 8521601 + gene protein_coding_gene FALSE TRUE AT2G19740.1 60S ribosomal protein L31 (RPL31A) Identical to 60S ribosomal protein L31-1 (RPL31A) [Arabidopsis Thaliana] (GB:Q9SLL7); similar to 60S ribosomal protein L31 (RPL31C) [Arabidopsis thaliana] (TAIR:AT5G56710.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) -0.377161568900562 -4.50202001481912 0.00176648058084626 1 5.88505104275462 17.3263469703054 -0.377161568900562 0.0715812577857527
AT2G26070_at 6.32496833968362 6.3506114584 6.38359795904755 5.99507847832335 7.06450850562233 7.21030119763074 5.99370279630929 6.22631524502507 6.54900912962568 6.34867460002205 7.06837216509402 7.13730429635055 6.73279008973158 6.56355399212 7.23281824836725 6.8730447202274 6.69095375481225 6.55217460428962 6.60285163080702 0.203955979576794 0.210324441789246 0.203955979576794 0.212437356444346 0.206051802515732 0.210062953997012 0.214381956487175 0.215574991915330 0.215695011223217 0.221213465085532 0.216118442722748 0.209454519626367 0.209308711950495 0.218519729278303 0.211597524220517 0.207087629837714 0.224585762074354 0.209134032701809 0.214548032741899 2 2 - 11112854 11113504 11113175 11112750 11114266 - gene protein_coding_gene FALSE TRUE AT2G26070.1 RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) Encodes a predicted membrane protein. Similar sequences are widely distributed and conserved in plants, animals and protists but absent in fungi and prokaryotes. The sequence has no known motifs and no biological function has been assigned in any species. In Arabidopsis, it appears to be involved in the negative regulation of the response to ethylene. similar to RTH (RTE1-HOMOLOG) [Arabidopsis thaliana] (TAIR:AT3G51040.3); similar to green ripe-like 1 [Lycopersicon esculentum] (GB:ABD34616.1); contains InterPro domain Protein of unknown function DUF778; (InterPro:IPR008496) 0.397835052845334 4.50017024259048 0.00177095933728210 1 5.88282325326483 13.1219129661847 0.397835052845334 0.0824454316530152
AT4G32530_at 9.5793100966719 9.56968574619126 9.82284653934196 9.891059884602 9.99596240292144 9.51953027275224 9.59642590236008 9.60823561009848 9.13063127300289 9.10536750714257 9.70853911912848 9.74955185140857 9.76637883444685 9.6507340632049 9.78238260592778 9.30910523462322 9.6453979600039 9.57301357053318 8.96761748753147 0.140840900301719 0.143313390419817 0.150205511305292 0.145866089177017 0.147422931220024 0.1535244897262 0.141408822051594 0.149253015759425 0.171541009144570 0.157025252645093 0.143448888929489 0.142641580809171 0.14557258154565 0.153946314463242 0.151769605607834 0.150997225230679 0.147596281464986 0.161367940412941 0.161973078045298 4 4|0 -|/ 15693410 15694928 15694315.4 15693120 15695077 - gene protein_coding_gene FALSE TRUE AT4G32530.1 vacuolar ATP synthase, putative / V-ATPase, putative similar to H+-transporting two-sector ATPase, C subunit family protein [Arabidopsis thaliana] (TAIR:AT2G25610.1); similar to vacuolar membrane ATPase subunit c'' [Citrus limon] (GB:AAO73433.1); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379) 0.399600625878972 4.5000516796688 0.00177124682475773 1 5.88268043991506 19.0558870539350 0.399600625878972 0.0833312982535992
AT3G07020_at 6.69208902544304 6.9049180138578 6.76052412378526 6.72134072135234 6.95362737050522 7.22099801984626 6.86392930947458 6.71415324740674 6.4302484925331 6.2163332365729 7.09723546046556 7.00722400770049 6.92836633301906 7.10814907175259 6.98008982460212 7.0327711211929 7.2209934644362 6.62300534192086 6.52405217689288 0.174677069883676 0.175112647238809 0.183675897037325 0.177551652117510 0.16489686478982 0.180230859904195 0.175590036412073 0.19304589859713 0.185856441286165 0.181176003169732 0.168366132392568 0.176146649588394 0.178059181558679 0.174839800706347 0.169090167480969 0.173334581933757 0.183121111236614 0.181099803142906 0.173327317949142 3 0|3 /|- 2218167 2218918 2218525.625 2217628 2221708 - gene protein_coding_gene FALSE TRUE AT3G07020.1|AT3G07020.2 UDP-glucose:sterol glucosyltransferase (UGT80A2) similar to UDP-glucose:sterol glucosyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G43620.3); similar to UDP-glucose:sterol 3-O-glucosyltransferase [Panax (GB:BAC22616.1); similar to Glycosyl transferase, family 28 [Medicago truncatula] (GB:ABE85238.1); similar to UDP-glucose:sterol 3-O-glucosyltransferase [Panax (GB:BAC22617.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213); contains InterPro domain Glycosyl transferase, family 28; (InterPro:IPR004276) 0.364934092981663 4.49690405172985 0.00177889752191451 1 5.87888808038955 13.5489177940268 0.364934092981663 0.0649246694431657
AT3G55470_at 6.35659904018116 6.9926732737373 7.40568160293244 7.66307021299537 7.85299096145438 7.01209134225732 4.80435170394222 4.88461193040132 4.82070397657526 3.99972559317233 3.58783188066157 3.73751595960363 4.26802366447656 4.42701347001757 3.24273920973203 4.49465393108178 4.28865899401322 4.0840766181681 4.44755161821504 0.206564350692637 0.207788133666235 0.213959542496321 0.214088122329132 0.211349272268352 0.223700736507556 0.20751160842434 0.211847189610064 0.212744433803517 0.209963650260692 0.209753718658283 0.209042632533086 0.206432903054356 0.219265309975616 0.210342477613343 0.213470209171784 0.214060065665169 0.206514238437083 0.207607572625829 3 3|0 +|/ 20575357 20576882 20576325.8 20575217 20577307 + gene protein_coding_gene FALSE TRUE AT3G55470.1|AT3G55470.2 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63220.1); similar to Os-FIERG2 gene product [Oryza sativa] (GB:AAC04628.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.658776681413069 4.49592570068678 0.00178128277796189 1 5.87770896873887 10.8409960644661 0.658776681413069 0.18833509730044
AT3G10610_at 7.29111728510839 7.39571458077271 6.22950917368724 6.15481300663764 6.73802686936116 7.26590107458946 7.63207596729566 7.75685053224208 5.97917990846345 6.56798193622806 6.17988572540145 7.43242622761052 6.70143712944514 6.01076900076052 7.47201209022449 6.25418003059374 6.40474628202445 6.4477616420245 7.08622019982101 0.214020041855283 0.212302265228157 0.206880498860204 0.213567267550083 0.207107475406562 0.209999463326083 0.208549809246829 0.216618900511885 0.225623675795980 0.211035915912291 0.207477937958476 0.208539858967425 0.205496808632401 0.225856069055431 0.213932622213958 0.210276092441789 0.234350853132465 0.207714072095955 0.204437107550961 3 3 + 3319493 3319857 3319663.455 3319032 3320154 + gene protein_coding_gene FALSE TRUE AT3G10610.1 40S ribosomal protein S17 (RPS17C) Identical to 40S ribosomal protein S17-3 (RPS17C) [Arabidopsis Thaliana] (GB:Q9SQZ1); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G05220.2); similar to 40S ribosomal protein S17-like protein [Solanum tuberosum] (GB:ABA46777.1); contains InterPro domain Ribosomal protein S17e; (InterPro:IPR001210) -0.426717737889705 -4.49547749404002 0.00178237667401847 1 5.877168731067 13.6366825349692 -0.426717737889705 0.0964676890626306
AT4G24220_at 9.88642834642477 10.1442844803567 10.0449321002087 10.1776487193519 10.3525250431697 10.1592370647446 9.5512436583853 9.7448011478988 9.6568735114016 9.43835519110497 10.0553797124575 9.48227002595175 9.85808486118723 10.035768374203 9.604442414882 9.82159215674348 9.6324289937416 9.80946738428926 9.09201062974643 0.121164630018445 0.119344163425182 0.122454058155789 0.122310004709064 0.117010363339178 0.122110031308145 0.119637444668432 0.121078761773544 0.141008867505007 0.117417460503542 0.118968172996147 0.119922015238038 0.125077150071681 0.12490149477706 0.122536021283592 0.124247400807240 0.129797610680096 0.131646428871552 0.118823950529271 4 4 + 12565893 12566404 12566040.727 12564955 12566765 + gene protein_coding_gene FALSE TRUE AT4G24220.1|AT4G24220.2 VEP1 (VEIN PATTERNING 1) encodes a novel protein containing mammalian death domain involved in programmed cell death. Gene is expressed in vascular system and mutants carrying dominant mutation in the gene have defective vascular patterning. Gene expression is induced specifically by wounding. similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G58750.1); similar to progesterone 5beta-reductase [Isoplexis sceptrum] (GB:ABB36654.1); similar to progesterone 5-beta-reductase [Di (GB:ABA77554.1); similar to progesterone 5-beta-reductase [Di (GB:ABA77558.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720)|similar to wound-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G58750.1); similar to progesterone 5-beta-reductase [Di (GB:ABA77554.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720) 0.371789559974975 4.49378716142922 0.00178650863240929 1 5.87513099365585 19.5992254123257 0.371789559974975 0.0689896327180239
AT3G25860_at 7.46644677760017 7.68621741540798 6.11570246887556 5.72871310636933 6.6095990538111 6.18205308372323 8.4127442553557 8.23350464681122 7.66774285138706 7.31578535052668 8.43754283777998 8.82640668884274 7.31930076681348 8.10560619662656 9.02587795905254 7.81566100290782 7.22526888431792 8.31066816446406 6.80130023505082 0.203053882362348 0.204057528583494 0.201124403705821 0.216969108243747 0.203627925982561 0.212120969845666 0.206864755183813 0.209058486409157 0.211859960570892 0.205409178963128 0.204434497146897 0.208538170542159 0.205804062408288 0.205391349107948 0.219125573563581 0.201431162433885 0.205987703637052 0.211301092468149 0.212192675036622 3 3|0 +|/ 9462712 9463764 9463132.4 9461797 9464024 + gene protein_coding_gene FALSE TRUE AT3G25860.1 LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE); dihydrolipoyllysine-residue acetyltransferase Nuclear encoded dihydrolipoamide S-acetyltransferase (LTA2) that encodes teh Pyruvate Decarboxylase E2 subunit. Mutant has embryo defect. similar to EMB3003 (EMBRYO DEFECTIVE 3003), dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G34430.1); similar to dihydrolipoamide S-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95959.2); similar to Os08g0431300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061862.1); similar to Os09g0408600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063142.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) -0.459514630993257 -4.49118807261353 0.00179288217662042 1 5.87199672313936 14.7518231217887 -0.459514630993257 0.111211327291259
AT1G21610_at 6.22799634883669 6.3424828246451 5.50463522972517 5.29995561536039 6.0732651379657 6.10128252302669 5.35732690229608 4.89908874985732 5.87458043770767 5.34079815293016 4.87489860644287 4.68976848428062 4.85582874398836 4.96064898805469 4.17289962961897 4.61995422280563 4.82727662096283 4.92686653848539 5.58657907579612 0.252017457780142 0.248834689773042 0.246657372682924 0.249855308038448 0.247111242587512 0.251631131874814 0.244548619267914 0.254840744587532 0.255113631088380 0.255516539834936 0.244548619267914 0.244548619267914 0.244548619267914 0.26481912747193 0.247820907018985 0.251338061174624 0.264913800463488 0.244548619267914 0.244548619267914 1 1 + 7578081 7578608 7578425.545 7573911 7578945 + gene protein_coding_gene FALSE TRUE AT1G21610.1|AT1G21610.2 wound-responsive family protein similar to wound-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G77310.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAV24767.1); contains domain UBINUCLEIN/YEMANUCLEIN (PTHR16426) -0.410786953018687 -4.49042563536367 0.0017947564900648 1 5.87107706039147 10.8965893088681 -0.410786953018687 0.0892143496842534
AT1G06960_at 5.56005105000296 5.60262624616701 5.31436674328763 5.13407151503943 5.54500172512909 5.50079014455428 5.79562010672019 5.78028508244704 6.36939282719696 6.25821933534386 5.97589441259196 6.1160007521738 5.92168177112008 5.92889068169925 5.82620553610961 5.98754599280238 5.4133747162104 6.21865214305956 6.13332516663615 0.197924265424309 0.183450683446786 0.191551145304366 0.186627500266345 0.186158597856627 0.199767355398759 0.188099974002161 0.194699437870254 0.191136674237504 0.190042811466633 0.188559484374432 0.186533951299677 0.197797514487809 0.190264318167406 0.187119101492292 0.184758257936638 0.186002173492010 0.182558056349716 0.184181960523379 1 1|0 +|/ 2136470 2137490 2137094 2135850 2137731 + gene protein_coding_gene FALSE TRUE AT1G06960.1|AT1G06960.2|AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative similar to U2B'' (U2 small nuclear ribonucleoprotein B), RNA binding [Arabidopsis thaliana] (TAIR:AT2G30260.1); similar to spliceosomal protein (GB:AAA33847.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to U2B'' (U2 small nuclear ribonucleoprotein B), RNA binding [Arabidopsis thaliana] (TAIR:AT2G30260.1); similar to spliceosomal protein (GB:AAA33847.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.320601557501565 -4.48977390832695 0.00179636031738398 1 5.87029085480319 11.6176898402251 -0.320601557501565 0.0330660521116593
AT1G72710_at 10.4738831049773 10.414696979721 10.6671034536098 10.4656110260040 10.9541283888396 10.7847126481013 10.1569428367870 9.86764665109263 9.50999306382205 9.61401347239044 9.61041567310902 9.63662046239654 9.94821412871275 9.73710799037162 9.62070926487769 9.85954942106173 10.1826780555897 9.76694838716764 9.5079896660704 0.0878693656270121 0.0888235415469471 0.0894034349756674 0.09541808799438 0.0908036845421712 0.0916015289620749 0.0878693656270121 0.0890620173351621 0.099273059150645 0.0934840417176946 0.0900955481435971 0.0881365178150587 0.0930354339208267 0.0919504092808321 0.0910617232547297 0.0878693656270121 0.0929883679576139 0.0924019343374343 0.0978011260358845 1 1|0 +|/ 27378782 27379752 27379422.5 27375933 27380246 + gene protein_coding_gene FALSE TRUE AT1G72710.1 casein kinase, putative Encodes a member of the casein kinase 1 protein family that is localized to the cytoplasm and nucleus. similar to CK1 (casein kinase 1-like protein 1), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G26100.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81302.1); similar to casein kinase I-like protein [Brassica oleracea] (GB:AAF19807.1); similar to casein kinase I-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.370439087405375 4.48885211471554 0.00179863138732394 1 5.86917872585291 20.1427302146441 0.370439087405375 0.0684597277228019
AT2G21150_at 5.50697368342841 5.29698945435063 5.20931979985477 5.08750594631804 5.29696148859905 5.31719369892373 5.30021554020149 5.48617687952032 4.9292995040674 5.47558073518255 4.94440852722837 4.99934984179503 5.33154618333683 4.89577169610211 4.85762648555883 5.4537293248963 4.38021607362845 4.57670871854932 5.94713504494555 0.294262415207845 0.291738230209557 0.306239020448974 0.291738230209557 0.291738230209557 0.292843292516956 0.291738230209557 0.302854789090212 0.292301562476665 0.301176099500153 0.291738230209557 0.293271508903405 0.305919285899142 0.292602140078643 0.301815560439444 0.291738230209557 0.295456860272507 0.297035466090502 0.305640017934126 2 2|0 +|/ 9074162 9074976 9074523.2 9072419 9075174 + gene protein_coding_gene FALSE TRUE AT2G21150.1 XAP5 family protein similar to Os09g0535300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063780.1); similar to PREDICTED: similar to XAP-5 protein isoform 5 [Danio rerio] (GB:XP_706947.1); contains InterPro domain XAP5 protein; (InterPro:IPR007005) -0.345297905481454 -4.48862282427731 0.00179919678252942 1 5.86890206688873 10.5029627452923 -0.345297905481454 0.0530358066067725
AT3G26744_at 7.19650213969764 7.59308186117296 6.61123715495258 6.8542493314162 7.75871586125371 7.17559105387683 7.80293449098758 7.92008616745251 7.66330401268583 7.8373477284255 7.3803820778368 8.00329272660439 7.28573856736123 6.9451825669012 7.06299849789348 7.82350535374033 6.89863403035954 7.2003665902232 7.92541927746137 0.212315851861589 0.213312582811108 0.218095057356184 0.206694866830068 0.205253748227632 0.218436504812779 0.218573975700862 0.207437826530012 0.228381013436058 0.209695796490120 0.223333117636913 0.201909078073657 0.211173121564621 0.223927413852854 0.207878233679053 0.202499017806202 0.211123482555254 0.208632839737374 0.208348903563471 3 3 - 9834190 9834739 9834469.727 9833926 9836484 - gene protein_coding_gene FALSE TRUE AT3G26744.1|AT3G26744.2|AT3G26744.4 ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding / transcription factor|ICE1 (INDUCER OF CBF EXPRESSION 1); DNA binding Encodes a MYC-like bHLH transcriptional activator that binds specifically to the MYC recognition sequences in the CBF3 promoter. Mutants are defective in cold-regulated gene expression. Cold stress triggers protein degradation of nuclear GFPICE1 protein, and the RING finger protein HOS1 is required. Identical to Transcription factor ICE1 (Inducer of CBF expression 1) (Basic helix- loop-helix protein 116) (bHLH 116) (AtbHLH116) (BHLH116) [Arabidopsis Thaliana] (GB:Q9LSE2;GB:Q2V3S3;GB:Q5PNR8); similar to basic helix-loop-helix (bHLH) family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT1G12860.1); similar to inducer of CBF expression 1 protein [Capsella bursa-pastoris] (GB:AAS79350.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.505940301306028 -4.48790571348948 0.00180096630538848 1 5.86803674883827 14.9309012030459 -0.505940301306028 0.130663657270567
AT3G43590_at 6.79785284015344 7.27276985028324 6.8756038058521 6.7704420553386 6.72294757434115 6.57489813338191 7.04889938904916 7.44410032970339 7.01792614607605 7.07637911090335 6.65914223579102 6.839749035136 6.68848073953121 6.40097796700137 6.92235195648598 6.21677177950576 6.27571715976996 6.59876259685794 7.1722941643202 0.256341551334041 0.248300142147764 0.254133946318327 0.268067131246523 0.248825770005171 0.255440237890014 0.2578142115364 0.247242728618839 0.258711979893396 0.246844218380021 0.255375607096436 0.252908364742738 0.245740716315034 0.249355390020503 0.246945971825394 0.243694374346527 0.264656150285779 0.247248560063719 0.247428816937045 3 3|0 +|/ 15522573 15523162 15522933.4 15520609 15523562 + gene protein_coding_gene FALSE TRUE AT3G43590.1 zinc knuckle (CCHC-type) family protein similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT3G43490.1); similar to E3 ubiquitin ligase interacting with ar (GB:CAL55153.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.459277500037748 -4.48360401594580 0.00181162051989305 1 5.86284406169446 13.7704945760261 -0.459277500037748 0.111443385039925
AT2G44230_at 6.1817090786591 6.09406391468624 5.10898210384627 4.71276180075319 6.2549744468697 5.92598850649338 7.3255941825083 7.02869373375923 5.86970964319687 6.28627637855708 6.93043753458392 6.7929820862163 7.14757015142005 6.7967156042547 6.38774121650003 6.67288330899483 6.3305568052386 6.60947725173106 7.15211659525788 0.177165858332772 0.179950546439072 0.183206301490195 0.179585928689062 0.183177780169975 0.182989189133917 0.182023508937299 0.183695335156883 0.195695840537182 0.175113861931319 0.175268696466577 0.181459697554487 0.176777159672143 0.183414087652983 0.182056050762302 0.179494072132672 0.181116809986027 0.182291273059009 0.175113861931319 2 2 + 18294736 18295274 18294924.273 18293601 18295476 + gene protein_coding_gene FALSE TRUE AT2G44230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44260.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE82110.1); contains InterPro domain Protein of unknown function DUF946, plant; (InterPro:IPR009291) -0.442163611857874 -4.4830975189146 0.00181287944918098 1 5.86223243692524 12.6513858212159 -0.442163611857874 0.103984662218017
AT3G54720_at 5.70614329457702 5.41411238090618 5.34697180638601 5.31918533667224 6.6659306145607 6.23013354391558 6.38845196329266 6.51585938266701 6.13204595109618 7.29488501654786 6.15353435888297 6.36916237699414 6.49907327583913 5.77934008240784 6.38135432543849 6.52431728755724 6.39037650451722 5.87325553323101 7.4803842216805 0.200041312516510 0.203978589848220 0.204176685573012 0.201875258117772 0.202165422828481 0.208895165662475 0.202124525506570 0.206921349079188 0.213404664413143 0.201385316448428 0.206595370335577 0.200041312516510 0.208287745658754 0.216505551378106 0.205574029409464 0.202891593022766 0.21622106760574 0.205219445396211 0.216767259104103 3 3|0 -|/ 20265929 20266749 20266356.889 20265703 20268826 - gene protein_coding_gene FALSE TRUE AT3G54720.1 AMP1 (ALTERED MERISTEM PROGRAM 1); dipeptidase Encodes glutamate carboxypeptidase. Various alleles show-increased cotyledon number and rate of leaf initiation, show transformation of leaves to cotyledons, altered flowering time and photomorphogenesis and an increased level of cytokinin biosynthesis. Involved in ethylene enhanced hypocotyl elongation in the light. Strong genetic interaction between TGH and AMP1. Identical to Probable glutamate carboxypeptidase 2 (EC 3.4.17.21) (Probable glutamate carboxypeptidase II) (AMP1) [Arabidopsis Thaliana] (GB:Q9M1S8); similar to peptidase M28 family protein [Arabidopsis thaliana] (TAIR:AT5G19740.1); similar to putative glutamate carboxypeptidase [Oryza sativa (japonica cultivar-group)] (GB:AAO24914.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase M28; (InterPro:IPR007484); contains InterPro domain Transferrin receptor-like dimerisation region; (InterPro:IPR007365) -0.419194887488378 -4.48246650826618 0.00181444918426526 1 5.86147039000294 12.5560519309805 -0.419194887488378 0.0935465517042524
AT4G00180_at 5.1872195027157 5.41898752635407 4.49199315056303 4.32040896682961 5.78147195358999 4.94849792289 6.14640747992218 5.94386973321363 6.50554433513261 6.26268159515641 5.97783500309781 6.23337801881455 6.0588325372188 6.17630170493781 5.98543644989117 5.7443977269215 5.47367419517558 5.96086815508082 6.14780906980263 0.208781085944519 0.222305436424907 0.224987228247107 0.216959337224447 0.224634789153654 0.221807270689532 0.217736841747079 0.217152867166937 0.223173849971731 0.213410623731803 0.207556804067548 0.212845163349850 0.210335641290675 0.212305473238716 0.207129622397722 0.208614205267707 0.213307332450693 0.214455023761855 0.219028368764693 4 4|0 -|/ 72812 74786 73871.333 72552 75384 - gene protein_coding_gene FALSE TRUE AT4G00180.1|AT4G00180.2 YAB3 (YABBY3); transcription factor|YAB3 (YABBY3) YABBY gene family member, likely has transcription factor activity, involved in specifying abaxial cell fate. Along with FIL, involved in patterning of the fruit. GUS reporter gene expression in seedlings is observed in the young leaves and as the leaf matures, expression is restricted to the abaxial tissues of leaves, expression is also observed on either side of the leaf margin in the younger tissues of leaf blades. Identical to Axial regulator YABBY3 (YAB3) [Arabidopsis Thaliana] (GB:Q9XFB1;GB:O81319); similar to AFO (ABNORMAL FLORAL ORGANS), transcription factor [Arabidopsis thaliana] (TAIR:AT2G45190.1); similar to YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus] (GB:AAS10177.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071)|similar to AFO (ABNORMAL FLORAL ORGANS), transcription factor [Arabidopsis thaliana] (TAIR:AT2G45190.1); similar to YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus] (GB:AAS10177.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.571266294110762 -4.48205852840894 0.00181546487621655 1 5.86097765046143 11.4081997664712 -0.571266294110762 0.156518814354607
AT3G25805_at 6.43830058949309 7.07021133408871 6.12178546494849 5.78439553286113 7.04833015767518 6.58440011475301 7.74298088015546 7.80422175425437 7.77094419896289 6.780090713912 7.02966684961984 6.96249433855464 6.28571767960837 7.2695097319506 7.54843908428781 6.8421440346225 6.27967410345469 6.84236690128712 6.7534443907632 0.228341206423037 0.226360772845240 0.234580397351819 0.224342121890725 0.22359407865202 0.240003896030235 0.234685293777749 0.226347996434340 0.235293904097585 0.221781638347453 0.221781638347453 0.223058796525223 0.22723018193904 0.221781638347453 0.22295448293824 0.222748881084801 0.247342338839183 0.223526623610817 0.235291933255659 3 3|0 -|/ 9427630 9428341 9427961.8 9427513 9429429 - gene protein_coding_gene FALSE TRUE AT3G25805.1 similar to Os04g0462300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053001.1); similar to B1358B12.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE76001.1) -0.549096166363978 -4.48037030722164 0.00181967433141315 1 5.8589383747105 13.8163255743466 -0.549096166363978 0.148072985550588
AT1G01770_at 6.02990329463829 6.97034835292593 6.88681501887778 7.19759264319518 7.89284664593837 7.60368362658754 5.75318093710274 5.84735622514348 6.43405259663742 6.8205864170615 6.4342194677072 6.95431775307769 6.67309366807149 6.959013042697 6.18068558951766 7.32774139932333 6.88027146315896 6.82364039163533 7.02730623508817 0.234512078414066 0.230160160632099 0.236683852733480 0.237384207345013 0.227108565871598 0.227108565871598 0.229206216507512 0.228082067765891 0.250195269847084 0.231555730253407 0.234905563119232 0.227108565871598 0.227108565871598 0.242203591923409 0.241878505740679 0.230383440952986 0.2459807382091 0.240770677446467 0.228666459229537 1 0|1 /|+ 281461 282151 281850.9 278615 282891 + gene protein_coding_gene FALSE TRUE AT1G01770.1 similar to Protein of unknown function DUF1446 [Rhodospirillum rubrum ATCC 11170] (GB:YP_426562.1); similar to Os07g0457300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059563.1); contains InterPro domain Protein of unknown function DUF1446; (InterPro:IPR010839) 0.631755855916662 4.47966157441189 0.00182144463922640 1 5.85808211247713 13.5426014746316 0.631755855916662 0.179301992799683
AT2G43350_at 7.69265308019815 8.40212446511868 8.1310288863034 8.15424311971912 8.2801246990066 7.85755870691276 6.33978140791094 6.60003908456996 6.62843563353875 6.19791954605502 6.46484150210927 6.60385871021833 6.31944052216863 6.16771198367486 6.40798684372048 5.92366189304051 5.81130803165981 6.4858071699205 5.21361828671025 0.255969278159075 0.241746350914533 0.249669439694071 0.248406795436755 0.244159466003363 0.237472092234419 0.238385994596408 0.238796374015149 0.235483388943829 0.241116352418786 0.23442602093681 0.234971473529009 0.235926736912929 0.244109462834878 0.237642448525121 0.234514830872415 0.247309176595995 0.24053125094692 0.246292351918484 2 2|0 -|/ 18016276 18017565 18017030.444 18015719 18017677 - gene protein_coding_gene FALSE TRUE AT2G43350.1 ATGPX3 (GLUTATHIONE PEROXIDASE 3); glutathione peroxidase Glutathione peroxidase. Functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses. Interacts with ABI2 and ABI1. Identical to Probable glutathione peroxidase 3, mitochondrial precursor (EC 1.11.1.9) (GPX3) [Arabidopsis Thaliana] (GB:O22850); similar to ATGPX1 (GLUTATHIONE PEROXIDASE 1), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT2G25080.1); similar to phospholipid hydroperoxide glutathione peroxidase [Raphanus sativus] (GB:AAL55967.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.55342096841604 4.47743064740747 0.0018270292898352 1 5.85538620609968 13.8253949666335 0.55342096841604 0.149888180194072
AT3G14080_at 5.96516241312612 5.82906268658016 5.89268132123871 6.0071079353437 6.29942568124026 6.11909586687528 5.96048011140457 5.7360612890019 5.77576206020704 4.92025386231118 5.78881983612284 5.73987201440343 5.6358765354526 6.25732177743847 6.2925382582708 5.95882084637207 6.17196108134711 6.08535240746654 5.78244572582317 0.20199476014851 0.200731893259275 0.197650349715369 0.198160370601680 0.211286028651799 0.195063354248525 0.196932829232965 0.205871821008351 0.220106274309651 0.200965105046896 0.20079964135353 0.195063354248525 0.202946084169825 0.195956829426987 0.202501981681895 0.195629548014904 0.203902739338261 0.199668042756628 0.196433210473318 3 3|0 +|/ 4667724 4668771 4668399.222 4667372 4669201 + gene protein_coding_gene FALSE TRUE AT3G14080.1|AT3G14080.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G19120.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE78228.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.352692935654199 4.47513516241368 0.00183279481985378 1 5.85261135025233 11.7182051101295 0.352692935654199 0.0585577796669693
AT3G59920_at 10.2465990429371 10.2914276185857 10.5942985678615 10.5698535468061 10.2625067012920 10.3372298420067 9.92452762907539 9.76545617291285 9.94819032407171 10.1246353556312 10.2919722311122 10.2523305130302 10.3461691336279 10.2162625115083 10.2829985778890 10.1923600278127 10.3840017299172 10.3261727061138 10.0297288886688 0.0818833819835731 0.0811446227816005 0.0849540649287982 0.0854965528020708 0.0803467494955273 0.0817582154456687 0.080420432428599 0.0814848075608052 0.0915016222265715 0.081119384433106 0.0814832057812919 0.0837267803905609 0.0789811591355783 0.0803884022228779 0.0826184340422472 0.0817395478900517 0.0819644028648977 0.0820400221530945 0.0828838603506625 3 3|0 +|/ 22147901 22149168 22148560 22145976 22149434 + gene protein_coding_gene FALSE TRUE AT3G59920.1 ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2); RAB GDP-dissociation inhibitor RAB GDP DISSOCIATION INHIBITOR 2 similar to RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT5G09550.1); similar to ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1) [Arabidopsis thaliana] (TAIR:AT2G44100.1); similar to GDP dissociation inhibitor [Medicago truncatula] (GB:CAF02075.1); similar to Rab GDI protein [Medicago truncatula] (GB:ABE89690.1); similar to GDP dissociation inhibitor [Cicer arietinum] (GB:CAA06731.1); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005); contains InterPro domain Rab GDI protein; (InterPro:IPR000806) 0.318159060683161 4.47447186898961 0.00183446445256641 1 5.85180936311695 20.4093465326848 0.318159060683161 0.0316715737421795
AT4G30600_at 10.0980247628902 10.0365064888806 10.3692915814852 10.3318125382948 10.5634325766981 10.3503271386225 9.79305404022686 9.76231946154178 9.69084840030295 9.64240124995888 9.97352135341062 9.76599951646907 9.92826614836675 9.81813144377604 9.47377362510237 9.93862563328972 9.9625183813257 9.66816136932954 9.60236982745838 0.095810797327166 0.0976448191644482 0.099269847437319 0.0990938879586087 0.0980086263414737 0.101938215472291 0.101357826856251 0.10249261529871 0.106697254838897 0.100191247806056 0.098099443599348 0.0970594439477995 0.0984421720211662 0.0987115277176863 0.101179094091954 0.0946212124405788 0.101399800349076 0.100430389096572 0.0999847583321913 4 4|0 -|/ 14938201 14938958 14938616.222 14937907 14941024 - gene protein_coding_gene FALSE TRUE AT4G30600.1 signal recognition particle receptor alpha subunit family protein similar to ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT1G15310.1); similar to putative signal recognition particle receptor [Oryza sativa (japonica cultivar-group)] (GB:BAD09759.1); similar to GTP-binding signal recognition particle SRP54, G-domain [Medicago truncatula] (GB:ABE92836.1); similar to Os08g0480100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062057.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle receptor, alpha subunit, N-terminal; (InterPro:IPR007222) 0.32607898085031 4.47336445081655 0.00183725568457408 1 5.85047020875799 19.8937616618086 0.32607898085031 0.0392905432181525
AT1G22610_at 8.69464913336004 8.7824465775492 8.28255900380285 8.31117469514642 8.13217435623989 8.4233065634631 8.56585947529171 8.6853263351432 9.52868913112742 9.0865142667028 9.14597659504093 9.30487977264401 8.70057918412098 9.04896652290988 9.21028551838826 9.1591120269857 8.34395196064641 9.03638881741969 9.27980417622969 0.092149460011942 0.0906998798498196 0.090785461940209 0.0934798122017677 0.0878685584613993 0.0951261236851778 0.091698362362416 0.0967610054840251 0.0955247013948417 0.090996666911235 0.0878685584613993 0.0924390485915033 0.095073591466302 0.0934183545660019 0.0901468247438634 0.0899953676940052 0.0995507296388896 0.0911702049314191 0.0878685584613993 1 1 + 7997018 7997498 7997261.091 7994280 7997577 + gene protein_coding_gene FALSE TRUE AT1G22610.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51570.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57880.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.349667516961729 -4.47253501447694 0.00183934926559261 1 5.84946706148224 17.6307387213943 -0.349667516961729 0.0567549495214621
AT2G31060_at 7.04567990922433 7.46779221802538 7.35249669393431 7.62811180567517 5.61830940880171 5.77939812492934 6.44227003809711 6.3784844011416 4.99211966643878 5.15719296612682 4.14899867372356 4.61988305450494 4.58104373466154 4.49874085786369 4.34346424154869 4.44998546684476 4.87495974152515 4.10028869827534 4.98283389626093 0.303799233944001 0.306808594168235 0.305674348227687 0.304505544231308 0.293103887519389 0.305193748526393 0.300730119694609 0.31179741235289 0.299224198284819 0.293103887519389 0.296494419576782 0.294006516554919 0.300775996414474 0.300423446281918 0.301032421491077 0.293103887519389 0.293641382484147 0.295867200520058 0.293103887519389 2 2|0 -|/ 13220944 13222107 13221577.556 13220249 13225662 - gene protein_coding_gene FALSE TRUE AT2G31060.1|AT2G31060.2 elongation factor family protein|GTP binding / translation elongation factor similar to elongation factor family protein [Arabidopsis thaliana] (TAIR:AT5G13650.2); similar to Os01g0752700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044268.1); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE80513.1); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795)|similar to elongation factor family protein [Arabidopsis thaliana] (TAIR:AT5G13650.2); similar to Os01g0752700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044268.1); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE80513.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain GTP-binding protein TypA; (InterPro:IPR006298); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.415427958805346 -4.47161667798633 0.00184167023966464 1 5.84835625092116 11.4621775257589 -0.415427958805346 0.092249770488333
AT2G23310_at 6.94845840443565 7.36947507825302 6.73221815667214 7.0668772515208 7.85433768627967 7.28883196678969 6.84208124863321 6.22338666713437 4.37428068483118 5.43772319028925 5.93778244073778 6.25685669768234 5.88305272795709 5.79947947696093 6.0955344289006 5.33647533991302 6.34539373813023 5.49958003952322 5.37044385477035 0.260689850831916 0.243509322409367 0.256610096714967 0.248359642597575 0.24872615549339 0.250363790841153 0.257300754079537 0.27713791599905 0.308504438805668 0.246272214202458 0.248333686689886 0.250435336234497 0.252106961856695 0.257080987442855 0.249301919061251 0.248676395660316 0.261152527776345 0.272664869106966 0.252409054566695 2 2 + 9924790 9925813 9925077.727 9924600 9926338 + gene protein_coding_gene FALSE TRUE AT2G23310.1|AT2G23310.2 ATRER1C1 (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1C) Encodes AtRER1C1, a Golgi membrane protein involved in returning the molecules that are exported from the endoplasmic reticulum (ER) to the Golgi apparatus back to the ER (a mechanism known as retrieval). There are two Arabidopsis homologues of AtRERC1: AtRER1A and AtRER1B. Identical to Protein RER1C (AtRER1C) (RER1C) [Arabidopsis Thaliana] (GB:Q9ZWI7;GB:O22177); similar to ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) [Arabidopsis thaliana] (TAIR:AT4G39220.1); similar to putative endoplasmic reticulum retrieval protein [Capsella rubella] (GB:AAO23327.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.611584683481783 4.46948855796107 0.00184706092457456 1 5.84578151454837 12.5182509430594 0.611584683481783 0.172346411950690
AT1G56450_at 10.4772443982286 10.4649487131279 10.7613325792847 10.6273617393724 10.6469407346037 10.3629033162322 10.2988371620960 10.2011782597329 10.0269291681971 10.0971052932706 10.4646596642278 10.5452096256343 10.4279571045692 10.4771083485571 10.4653232142835 10.4315348294517 10.3678158809719 10.4954925887594 9.87316439380812 0.0814210770541034 0.0786535868844159 0.0828962916303415 0.0815227311909621 0.081002660684871 0.0820973741358849 0.0786535868844159 0.0786535868844159 0.101028222172679 0.0802538017817467 0.0812797102702278 0.0786535868844159 0.0812536781400922 0.0786535868844159 0.0830911101114397 0.0793016983074303 0.0828007195533773 0.08297905280176 0.0816244510440965 1 0|1 /|+ 21147239 21147798 21147493.5 21145548 21148065 + gene protein_coding_gene FALSE TRUE AT1G56450.1 PBG1 (20S proteasome beta subunit G1); peptidase 20S proteasome beta subunit PBG1 (PBG1) mRNA, complete cds Identical to Proteasome subunit beta type 4 precursor (EC 3.4.25.1) (Proteasome subunit beta type 7) (20S proteasome beta subunit G-1) (Proteasome component H) (PBG1) [Arabidopsis Thaliana] (GB:Q7DLR9;GB:O23718;GB:Q9C7X3); similar to PBA1 (20S proteasome beta subunit A 1), peptidase [Arabidopsis thaliana] (TAIR:AT4G31300.2); similar to Peptidase T1A, proteasome beta-subunit [Medicago truncatula] (GB:ABE89546.1); similar to Os09g0515200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063665.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.349701915520929 4.46903320048135 0.00184821658605943 1 5.84523048787173 20.7093203339092 0.349701915520929 0.0569541502764572
AT1G64860_at 10.9557268004357 11.0097893736606 10.9283739910113 10.8910245680741 11.0739798298974 10.7631683305890 12.0509540790234 11.9360178323882 11.6046367595410 11.5460554229298 11.6336280834296 11.5880994285476 11.2839532749493 11.3178702968066 11.5373038161077 11.2785259689351 11.2207492616895 11.5165846358159 11.5056072498872 0.0709261205290617 0.0703742229644659 0.0718391889206747 0.072059358937087 0.0731394448954567 0.0703742229644659 0.0723341079195689 0.0719086412335849 0.0756915055566325 0.0741347312628961 0.0739749334265176 0.0719734512117358 0.075926791033726 0.0756217121745144 0.0727525260333155 0.0721355523335552 0.0737584744983936 0.077040916786472 0.0738363725906789 1 0|1 /|+ 24103378 24104327 24103724.625 24101616 24104615 + gene protein_coding_gene FALSE TRUE AT1G64860.1 SIGA (SIGMA FACTOR A); DNA binding / DNA-directed RNA polymerase/ transcription factor Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to Sig1 [Sinapis alba] (GB:CAA75859.1); similar to sigma factor [Nicotiana tabacum] (GB:BAA88921.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.35199790324242 -4.46820120022068 0.00185033015069987 1 5.8442235904889 22.6882239289206 -0.35199790324242 0.0584637642910067
AT1G68190_at 7.02565765196966 7.24547825284051 5.56945623047111 5.35535093968933 7.81585402693808 6.18114548714634 7.4761266426366 7.46161595620759 8.45392621303537 8.07270605487873 7.71415656977687 8.0268852057083 7.42561870952075 7.81544273345581 7.69779525842015 7.64623839637198 6.39962060261082 7.04336462245448 8.29444466241855 0.204444676145639 0.197008082930526 0.210447544311115 0.228161515321251 0.189798386292971 0.240449300791994 0.196701035683068 0.195165373892564 0.211827739394972 0.193256605509456 0.194763534201035 0.19037697023282 0.195592046811632 0.189798386292971 0.202091306294426 0.189798386292971 0.242214380721981 0.200710764343626 0.193310451350631 1 1 + 25563827 25564496 25564148 25562909 25564875 + gene protein_coding_gene FALSE TRUE AT1G68190.1 zinc finger (B-box type) family protein Identical to Putative zinc finger protein At1g68190 [Arabidopsis Thaliana] (GB:Q9C9F4;GB:Q8GY83); similar to COL9 (CONSTANS-LIKE 9), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G07650.3); similar to Os06g0298200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057441.1); similar to CONSTANS-like protein [Ipomoea nil] (GB:AAG24863.1); similar to Os02g0724000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047975.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.937160001336679 -4.46587482100319 0.00185625378591328 1 5.84140751498441 14.6387519346878 -0.937160001336679 0.287845872274689
AT2G04270_at 5.86060270920154 5.81229982154198 5.09336983334142 5.33230488235639 6.18919093502816 5.82013391003827 6.34681028502542 6.07147694181503 5.58821323273051 5.54454878255295 4.64358709413491 5.34232980248514 5.47381769470928 5.09254316085711 5.3782243963235 5.65607650152202 5.71814600451649 4.43458447128033 5.73983784729736 0.201063131456756 0.190502202205145 0.201414552011830 0.19862266196573 0.187931543395048 0.190263959723086 0.191882231642855 0.197053503447042 0.195067943279307 0.193406182036235 0.187931543395048 0.188827194555353 0.193520659539172 0.188882435331392 0.200521819658646 0.190568659853487 0.202432478490277 0.204134718986658 0.196369765816007 2 2|0 +|/ 1478222 1479386 1478883.2 1474676 1480583 + gene protein_coding_gene FALSE TRUE AT2G04270.1|AT2G04270.2|AT2G04270.3|AT2G04270.4 glycoside hydrolase starch-binding domain-containing protein similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Glycoside hydrolase, starch-binding; (InterPro:IPR002044); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659)|similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Glycoside hydrolase, starch-binding; (InterPro:IPR002044); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659)|similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659)|similar to putative endoribonuclease E [Oryza sativa (japonica cultivar-group)] (GB:BAD33523.1); similar to Os08g0323600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061542.1); contains InterPro domain Ribonuclease E and G; (InterPro:IPR004659) -0.41041693133497 -4.46487362985343 0.00185880939661015 1 5.84019527597779 11.2365804622546 -0.41041693133497 0.0901604275908344
AT1G56220_at 11.0759877103079 11.2207139284893 10.9271361972416 10.9547567966711 11.7858687348657 11.3848996487581 10.4973560000669 10.5718280966361 10.998686676148 10.8965462816152 11.4198985943551 11.2258140786235 11.2882319029931 11.3886010884627 11.2045432676740 11.1731218577283 11.2657022931196 10.9520490363304 10.8078055802183 0.0995805537521769 0.094421406995623 0.0910720905691663 0.0953668484074101 0.0981031592097335 0.101828595435029 0.0939386462432414 0.0932908215473716 0.0959797719024166 0.0996317279224404 0.0905753821309648 0.0926770558537708 0.092409198528163 0.0945217676042416 0.0944935941157934 0.0897475034864068 0.104155218878815 0.0923066144417305 0.099330754055988 1 1|0 +|/ 21047082 21048092 21047398.111 21047013 21048403 + gene protein_coding_gene FALSE TRUE AT1G56220.1|AT1G56220.2|AT1G56220.3|AT1G56220.4 dormancy/auxin associated family protein similar to dormancy/auxin associated protein-related [Arabidopsis thaliana] (TAIR:AT1G54070.1); similar to Dormancyauxin associated [Medicago truncatula] (GB:ABE80617.1); contains InterPro domain Dormancyauxin associated; (InterPro:IPR008406) 0.380213164713031 4.46229982740824 0.00186539662882379 1 5.83707809601363 22.1226974445819 0.380213164713031 0.0750408757468882
AT1G10430_at 6.4995915295856 6.67828240068062 6.56066737598056 6.76861133624004 6.00735411646964 6.31819324861422 6.4906160756223 6.28543097458294 6.24056385887208 6.10369247479974 7.11036765653198 7.06964684285702 7.29228126967987 7.1259007037505 7.27940112058387 6.79941615800916 7.2319732739218 6.64980572915638 6.30250431988168 0.195257780059446 0.19338021614119 0.19338021614119 0.198363661969026 0.203682924411574 0.194264131796108 0.199262617947888 0.199064516703461 0.214905419814123 0.210624543180873 0.196293115829892 0.194386759901941 0.19338021614119 0.196683009620943 0.205489738598960 0.19338021614119 0.201727325699086 0.199983142934266 0.201506422701397 1 0|1 /|- 3428716 3429487 3428938.889 3428479 3430634 - gene protein_coding_gene FALSE TRUE AT1G10430.1 PP2A-2 (protein phosphatase 2a-2); protein phosphatase type 2A Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. Identical to Serine/threonine-protein phosphatase PP2A-1 catalytic subunit (EC 3.1.3.16) (PP2A1) [Arabidopsis Thaliana] (GB:Q07098); similar to PP2A-1 (protein phosphatase 2A-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G59830.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.389744242000868 4.462210664581 0.00186562527710066 1 5.83697008788475 13.0938113716366 0.389744242000868 0.0800353049131099
AT2G47470_at 10.7469473812500 10.635163316146 11.2762851852959 11.2786364954812 10.6758357773708 10.4603791043457 10.3507542889058 10.1346280203155 9.35576343633803 9.45330874158046 9.4817835858916 9.81445390897847 9.54926792963568 9.36059022202718 9.76498458784498 9.33487726461501 9.80139866296435 9.65128576817714 9.25489444299162 0.0919152709873 0.0903263698984097 0.0971024599370559 0.095254355819874 0.0940861980856124 0.0915508301050879 0.0932887796893735 0.0953596491230776 0.0966056606176853 0.101878802841873 0.0969299966030956 0.0903263698984097 0.0949341083641873 0.0949226772284145 0.0916802647174127 0.092771811165813 0.0928761000003842 0.0972477069405418 0.101602797069935 2 2|0 +|/ 19489712 19490722 19490306.333 19488490 19491085 + gene protein_coding_gene FALSE TRUE AT2G47470.1|AT2G47470.2|AT2G47470.3|AT2G47470.4 ATPDIL2-1/MEE30/UNE5 (PDI-LIKE 2-1, maternal effect embryo arrest 30, unfertilized embryo sac 5); thiol-disulfide exchange intermediate|ATPDIL2-1/MEE30/UNE5 (PDI-LIKE 2-1, maternal effect embryo arrest 30, unfertilized embryo sac 5) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Identical to Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) [Arabidopsis Thaliana] (GB:O22263); similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to protein disufide isomerase-like protein [Glycine max] (GB:BAD24713.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Endoplasmic reticulum ERp29, C-terminal; (InterPro:IPR011679); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Endoplasmic reticulum ERp29-type, C-terminal; (InterPro:IPR013331); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788)|Identical to Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) [Arabidopsis Thaliana] (GB:O22263); similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to putative protein disulphide isomerase [Brassica napus var. napus] (GB:AAS68180.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788)|Identical to Probable protein disulfide-isomerase A6 precursor (EC 5.3.4.1) (P5) [Arabidopsis Thaliana] (GB:O22263); similar to ATPDIL2-3 (PDI-LIKE 2-3), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT2G32920.1); similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to disulfide-isomerase precursor-like protein [Solanum tuberosum] (GB:ABB02620.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Endoplasmic reticulum ERp29, C-terminal; (InterPro:IPR011679); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Endoplasmic reticulum ERp29-type, C-terminal; (InterPro:IPR013331); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) 0.348042794966242 4.46178111398655 0.00186672723576588 1 5.83644972816171 20.1695715869240 0.348042794966242 0.0562449881947923
AT1G22740_at 7.73054977878359 7.6783152263941 7.14381935653758 6.61267453778163 9.07529704961859 8.44243659596088 6.94100383066179 6.09168613440153 7.87484216589125 6.18091321044602 9.30997622777419 6.96451094290538 7.75231199594764 8.41617371246675 7.89092690081672 6.0505266175916 6.93868222357452 7.53831268839042 6.69045446785475 0.255253398092265 0.252446593909033 0.252446593909033 0.253563108755141 0.267406661892733 0.269912748210314 0.260965830970975 0.252446593909033 0.277728697963592 0.260416867898998 0.253466473801202 0.252446593909033 0.253349897186515 0.254953690529384 0.255422930180077 0.254198679713461 0.268957426509594 0.256230349756095 0.257297293826885 1 0|1 /|+ 8049566 8050434 8050003.625 8049089 8050697 + gene protein_coding_gene FALSE TRUE AT1G22740.1 RAB7 (Ras-related protein 7); GTP binding GTP-binding protein Rab7 Identical to Ras-related protein Rab7 (AtRab75) (RAB7) [Arabidopsis Thaliana] (GB:O04157); similar to AtRABG3a, GTP binding [Arabidopsis thaliana] (TAIR:AT4G09720.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.70022126235024 4.46074746448905 0.00186938181106624 1 5.83519742390395 14.7260132863078 0.70022126235024 0.205250139275619
AT1G57620_at 5.7293970902421 6.04693350377603 5.66276214135149 5.91559223546224 6.2835452916899 5.94547840825257 5.63387547081409 5.68574192810712 4.22147199396498 3.87745567580839 4.84525114969785 5.16028372534188 4.38658117805625 4.54904031122949 5.06654334289973 4.53223549745305 4.49279835691209 4.31658736972985 3.95944846249113 0.304308532134880 0.29374701457068 0.296267385494527 0.29014301948049 0.300589793679584 0.297539898585621 0.296221033067306 0.303950798648625 0.301917322702674 0.29014301948049 0.291331988741803 0.294068322574815 0.294219900359606 0.293039652715516 0.29014301948049 0.29014301948049 0.304685704473937 0.29038618491222 0.292542558971513 1 1 + 21346574 21348174 21347148.091 21346386 21348469 + gene protein_coding_gene FALSE TRUE AT1G57620.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G09580.1); similar to Os06g0210100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057112.1); similar to emp24 protein [Hyacinthus orientalis] (GB:AAT08688.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.413531963307202 4.46016804148237 0.00187087164013103 1 5.83449534757281 10.2069776722969 0.413531963307202 0.0918546666982114
AT4G26100_at 6.57546670859371 6.79548103871283 5.78687883179156 5.81730495212626 6.69838248216995 6.09919058298561 7.19147164248007 7.15352890877872 6.79043786480456 6.88603328987195 7.03139995987134 7.20523461741326 6.69347856032921 6.8730799701837 6.87290973006323 6.71463967724392 6.00734685102533 6.90471763495286 6.93317127927626 0.218004210228166 0.221610357037489 0.224363065863708 0.225531594429503 0.222845385382684 0.222774091511608 0.217758492904612 0.219204329536050 0.226057106528365 0.226283383451833 0.224231416475880 0.218015451420084 0.21886268317925 0.227298387126343 0.217758492904612 0.217758492904612 0.234418008776276 0.228607680075708 0.217758492904612 4 4|0 -|/ 13227901 13228812 13228241.3 13227459 13230806 - gene protein_coding_gene FALSE TRUE AT4G26100.1 CK1 (casein kinase 1-like protein 1); casein kinase I/ kinase Encodes a member of the casein kinase 1 protein family that is expressed in punctate particles at the cell periphery suggesting possible plasmodesmatal localization. Identical to Casein kinase I isoform delta-like (EC 2.7.11.1) (CKI-delta) [Arabidopsis Thaliana] (GB:P42158;GB:Q9SZI1); similar to CKL12 (Casein Kinase I-like 12), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G57015.1); similar to casein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72710.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81302.1); similar to casein kinase I-like protein; similar to the rat delta isoform of casein kinase I, Swiss-Prot Accession Number Q06486 (GB:AAA50233.1); similar to casein kinase I-like [Oryza sativa (japonica cultivar-group)] (GB:BAB92346.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.455288899277611 -4.4595566805321 0.00187244497638149 1 5.83375450709914 13.3435789866813 -0.455288899277611 0.110782377808909
AT1G63800_at 10.6874359974611 10.7186281629894 11.0777681629235 10.9421515133458 11.7953093347521 11.2378588280403 10.6727794538213 10.2441468543479 10.5413846614457 10.7149460093869 11.1142641170983 10.7594096976280 10.9881981367711 10.8470146272695 10.7304085475722 11.4009989580088 10.8524691035848 10.9794159966708 10.7497068301578 0.0851550125553805 0.0833120325625656 0.0834683748120026 0.0843459677176634 0.0838128419182405 0.0839975588182774 0.0835584813717535 0.0857110520236807 0.0938030813970583 0.0847891899241634 0.0833120325625656 0.0833120325625656 0.0833120325625656 0.0888679687705945 0.0834784503514483 0.0833120325625656 0.0878951881996501 0.0849799239932039 0.084159923232704 1 1|0 -|/ 23671553 23672428 23671952.8 23671279 23672743 - gene protein_coding_gene FALSE TRUE AT1G63800.1 UBC5 (ubiquitin-conjugating enzyme 37); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2-21 kDa 2 (EC 6.3.2.19) (Ubiquitin- protein ligase 5) (Ubiquitin carrier protein 5) (UBC5) [Arabidopsis Thaliana] (GB:P42749;GB:Q8VXY5;GB:Q9CAE2;GB:Q9CAJ4); similar to UBC4 (UBIQUITIN CONJUGATING ENZYME 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G41340.1); similar to ubiquitin conjugating enzyme (GB:AAA32900.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.486433786844581 4.45786190393469 0.00187681394068266 1 5.83170044374751 21.7358605709963 0.486433786844581 0.124050358299363
AT3G60600_at 10.7047542698938 10.8039343328917 10.8797505035712 10.7758616668981 11.2997268867507 11.1164608045400 10.4697509816547 10.2717286905158 10.3965957043940 10.3895083941136 10.8431334682105 10.6700266499668 10.6385006435068 10.6211583202935 10.6352365510797 10.6600017043726 10.5256018807005 10.5288991026692 10.4449028648285 0.0923636276775141 0.0885173904419008 0.0896634086837403 0.0934502669621186 0.0904020702110305 0.0925247840505657 0.0888394219628865 0.0903653531246843 0.0985072329285836 0.0939694793397719 0.0897279430273826 0.0885173904419008 0.0912962266776271 0.0945478688826333 0.0928160216699493 0.0885173904419008 0.0971731741137681 0.0894235690543298 0.089738209941544 3 3|0 +|/ 22411895 22413335 22412540.3 22411370 22413678 + gene protein_coding_gene FALSE TRUE AT3G60600.1|AT3G60600.2|AT3G60600.3 VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1); protein binding|VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1) Encodes VAP27 (for Vesicle-Associated Protein). VAP27 has high homology to the VAP33 family of SNARE-like proteins from animals. May be involved in vesicular transport to or from the ER. Located exclusively in limiting membrane of protein storage vacuoles. Binds SRC2. similar to vesicle-associated membrane protein, putative / VAMP, putative [Arabidopsis thaliana] (TAIR:AT2G45140.1); similar to VAP27 [Nicotiana plumba (GB:CAB65313.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.342696016177782 4.45745487286739 0.00187786486121867 1 5.83120704652491 21.3155737393622 0.342696016177782 0.052896121902205
AT4G29660_at 7.48157808922242 7.17618091225698 7.71078403996406 7.48877222834713 7.58433107629682 7.64148929570387 6.5294621440486 6.55741964236333 6.061431110525 5.6781025203485 6.18132463598196 5.72685555925788 5.9227309375193 5.87326815220726 6.12666697742083 5.97466244455131 6.34923318706996 5.86722922104423 6.09549982038012 0.191282913856008 0.190319490486189 0.189543436148215 0.194589503492205 0.200223854057494 0.194870551202015 0.191156222890232 0.194694239670411 0.189015015748260 0.190521759431276 0.189015015748260 0.189350044227946 0.194990075161335 0.192391745735324 0.192698872440419 0.197396465775666 0.197824182807575 0.192276114317199 0.189015015748260 4 4 - 14534501 14535151 14534824.636 14534269 14535298 - gene protein_coding_gene FALSE TRUE AT4G29660.1 EMB2752 (EMBRYO DEFECTIVE 2752) similar to hypothetical protein MtrDRAFT_AC146632g4v2 [Medicago truncatula] (GB:ABE85807.1); contains domain gb def: Hypothetical protein T16L4.170 (Hypothetical protein At4g29660; T16L4.170) (PTHR19317:SF1); contains domain PRENYLATED RAB ACCEPTOR 1-RELATED (PTHR19317) 0.363959601034427 4.45673490066316 0.00187972532311496 1 5.83033423353339 13.2451309484251 0.363959601034427 0.0662610384960244
AT1G49300_at 9.80410474564504 9.77212335452151 10.2122822341211 10.2472702077634 10.2288953478989 9.99824256145306 9.87115931333821 9.69829592867758 9.59568402413542 9.6440233387724 9.99985097046806 9.6503641676734 10.0174336042086 9.9647601535836 9.8217758257124 9.93037586992048 10.0691763278093 9.92457941859774 9.64824744640018 0.112078238148757 0.104404562370290 0.105744040048801 0.105448390677497 0.106592027130531 0.113033582715664 0.102256175165044 0.102338244564277 0.115683779963532 0.108631765777095 0.103866495703327 0.108210858345170 0.105072416907644 0.106593888666835 0.109091350574091 0.103506480045829 0.111428619042465 0.110499770881854 0.105541379380491 1 1|0 +|/ 18239432 18240589 18240119.875 18238392 18241211 + gene protein_coding_gene FALSE TRUE AT1G49300.1|AT1G49300.2 ATRAB7/ATRABG3E/AtRABG3e; GTP binding encodes a small GTPase involved in membrane trafficking. Gene expression is induced by hydrogen peroxide and lines. Lines overexpressing the gene are more tolerant to high salt and hyperosmotic conditions. similar to AtRABG3f/AtRab7B (Arabidopsis Rab GTPase homolog G3f), GTP binding [Arabidopsis thaliana] (TAIR:AT3G18820.1); similar to RAB7C [Lotus japonicus] (GB:CAA98170.1); similar to unknown [Solanum tuberosum] (GB:ABB02623.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.339111512370450 4.45457432349888 0.00188532034986654 1 5.82771443381593 19.7548506176854 0.339111512370450 0.0505513453725778
AT4G38200_at 6.21293219918433 5.88915075103952 4.90584641593356 5.02251114521785 5.46183389346503 5.06054407343766 5.35425169676974 5.59624335318491 5.83920656539799 5.4803397320746 5.26111728587859 5.81394139649012 5.44456611922953 5.44413417972213 5.4617699610349 5.37006731232581 4.92378274861816 5.22584091046342 5.42151970599619 0.168564792537378 0.163385057368481 0.175849203462655 0.170252484682779 0.168856043418897 0.177307817740733 0.173475151998638 0.165757808466011 0.170086369286022 0.161228986236708 0.166107957910073 0.16177094433163 0.169917620237690 0.172748654575443 0.178058456378241 0.166331018513189 0.166975192098353 0.166081870462759 0.165116094630419 4 4 + 17921917 17922415 17922120 17915287 17922726 + gene protein_coding_gene FALSE TRUE AT4G38200.1 guanine nucleotide exchange family protein similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G35380.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) -0.431331731650181 -4.44897964596862 0.00189989188654030 1 5.8209267255089 10.9121681028840 -0.431331731650181 0.100615857717707
AT1G73090_at 5.89901208765124 5.99966495810782 5.58135923872057 5.35531548231707 6.20718943470864 5.95473385782217 6.61852744683296 6.46054694799924 5.01878333092825 5.37540274758208 5.10519443597284 5.11965779900426 5.46922001568863 5.09968876493206 4.70817604377549 5.36346874825033 5.30472650863057 4.84438699082336 5.76367417770272 0.233246077835802 0.216534646487826 0.21459532338715 0.217278028574050 0.218428491540803 0.223766243561110 0.217199244574231 0.219885854307369 0.219091039580934 0.216945612165538 0.224051655517671 0.214273941510382 0.224688739286414 0.214273941510382 0.216247621913319 0.214273941510382 0.219804484590006 0.225161672743379 0.214273941510382 1 1|0 +|/ 27492875 27494134 27493489.714 27491878 27494427 + gene protein_coding_gene FALSE TRUE AT1G73090.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE87174.1) -0.364463431054344 -4.44717789111320 0.00190461041840838 1 5.81873955886065 11.2659278478312 -0.364463431054344 0.0670055582895259
AT3G55410_at 8.85121538113455 8.93225333347461 9.15788795041376 9.01805959472648 8.79546477818702 8.53224947220633 8.82554266815307 8.59950953361202 7.46739624693824 7.81944458384385 8.51395622142847 8.6503869502645 8.1381841788343 8.25281214327735 8.42144724751623 8.52355166769987 8.30840535098217 8.09834448215175 7.8458987565258 0.133454916743440 0.133831261312291 0.126341047822297 0.140574706955386 0.129009451414414 0.131031322363346 0.130190894711154 0.136499777478908 0.141964469935636 0.138303218890591 0.128648321265406 0.131847434223999 0.134673099763181 0.136794935685196 0.129858739641844 0.126155839694570 0.131144934116284 0.140917547864279 0.138428451168527 3 3|0 +|/ 20555826 20556627 20556215.2 20552412 20557011 + gene protein_coding_gene FALSE TRUE AT3G55410.1 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative similar to 2-oxoglutarate dehydrogenase E1 component, putative / oxoglutarate decarboxylase, putative / alpha-ketoglutaric dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G65750.1); similar to oxoglutarate dehydrogenase (succinyl-transferring) [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_568841.1); similar to Predicted 2-oxoglutarate dehydrogenase, E1 subunit (ISS) [Ostreococcus tauri] (GB:CAL52875.1); similar to hypothetical protein DDBDRAFT_0219311 [Dictyostelium discoideum AX4] (GB:XP_636906.1); contains InterPro domain 2-oxoglutarate dehydrogenase, E1 component; (InterPro:IPR011603); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) 0.363129027144935 4.4471016269245 0.00190481042148111 1 5.81864696818697 16.8761724520078 0.363129027144935 0.0662355041304312
AT4G26190_at 4.92772380044578 5.23620061534703 4.8314606428817 5.09938460131549 4.83562860411354 5.16363737633586 4.88532916166918 5.10338294698668 5.20593319811888 5.16871756292465 4.12488117547976 4.8387010068994 4.26309555028691 4.01405269234075 4.9667135070385 4.67859122696811 4.79195726293513 4.55893131285646 5.60200663473348 0.178427528388279 0.179762377146699 0.190452082016735 0.195181018756330 0.177602064441639 0.180455277488782 0.173861421897398 0.183231073544066 0.181956548577247 0.179971820342047 0.185819403202215 0.186062320727874 0.185966502509239 0.190711223860048 0.178697089349984 0.176484884625484 0.182212277832847 0.179942674097526 0.186498186859796 4 0|4 /|- 13262491 13263503 13262880.286 13262245 13266975 - gene protein_coding_gene FALSE TRUE AT4G26190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to 36I5.7 [Oryza sativa (japonica cultivar-group)] (GB:AAM22488.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.425784161679447 -4.44592263984432 0.00190790519944450 1 5.81721545283666 9.93792743469172 -0.425784161679447 0.0982118990077505
AT2G17360_at 9.55235967827574 9.55767345936615 8.70295684582768 9.0747937979886 9.25381599659518 9.00420820124177 9.73560564963864 9.84159813482381 8.93188324757812 9.07946791615523 8.85141872759582 9.40500898413179 8.72061465843935 8.7921860870963 9.48643978024682 8.55099584416627 8.59340183077534 8.60709150684433 8.9518712760816 0.125837129142011 0.128196564114077 0.133096259672456 0.135305440394771 0.128118681326652 0.128487747466880 0.143004254023461 0.131055400064806 0.134051742181797 0.131296656558552 0.130884015740656 0.132828477459805 0.140475862499592 0.131694085965196 0.135495578076130 0.136346016317494 0.137889929506953 0.134309789894982 0.130915928181473 2 2 + 7554350 7555188 7554773.636 7553562 7555395 + gene protein_coding_gene FALSE TRUE AT2G17360.1 40S ribosomal protein S4 (RPS4A) Identical to 40S ribosomal protein S4-1 (RPS4A) [Arabidopsis Thaliana] (GB:Q93VH9;GB:Q7XJS7); Identical to 40S ribosomal protein S4-3 (RPS4D) [Arabidopsis Thaliana] (GB:Q8VYK6;GB:Q944M1;GB:Q9FGI0); Identical to 40S ribosomal protein S4-2 (RPS4B) [Arabidopsis Thaliana] (GB:P49204;GB:Q42346;GB:Q9FL39;GB:Q9LYQ6); similar to 40S ribosomal protein S4 (RPS4B) [Arabidopsis thaliana] (TAIR:AT5G07090.1); similar to 40S ribosomal S4 protein [Glycine max] (GB:AAM93434.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4E; (InterPro:IPR000876); contains InterPro domain KOW; (InterPro:IPR005824) -0.387355827986213 -4.44344501008514 0.00191442651425761 1 5.81420632281915 18.2721942158115 -0.387355827986213 0.0796482870399556
AT1G59760_at 5.84592055198306 6.3119459767836 5.72137163683434 5.88034093325273 5.95495165519866 6.11844861645011 6.26484749056105 6.29501405035549 5.69321009194484 6.098225043519 5.52279942416892 5.38745065027872 5.11205388446304 5.28873650782694 6.00191526864409 5.49758118654035 5.544125288081 5.47981431717865 6.31207761186653 0.195895022486398 0.20022166498681 0.190746404250114 0.192611513529473 0.190746404250114 0.196355868827216 0.191556477974499 0.203179479488594 0.198781337452044 0.190795109106073 0.200842614536722 0.197202969783091 0.196105448736847 0.196277340181248 0.193189913584298 0.197842786462312 0.206315878185484 0.201294534790691 0.202530597644631 1 1 - 21988246 21988732 21988575.455 21988110 21993840 - gene protein_coding_gene FALSE TRUE AT1G59760.1 ATP-dependent RNA helicase, putative similar to HEN2 (HUA ENHANCER 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT2G06990.1); similar to PREDICTED: similar to Superkiller viralicidic activity 2-like 2 isoform 1 [Canis familiaris] (GB:XP_849676.1); similar to KIAA0052 protein [synthetic construct] (GB:AAX29888.1); similar to PREDICTED: superkiller viralicidic activity 2-like 2 isoform 2 [Pan troglodytes] (GB:XP_001145794.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.407924245099626 -4.44279246912631 0.00191614804563011 1 5.81341361537077 11.8060120214313 -0.407924245099626 0.0899371949768184
AT1G12780_at 10.2203480833941 10.0721128399913 10.4591355512972 10.6023823490669 11.1039812166702 10.8666914308367 9.71375090398095 9.42515519000074 9.75123173899645 9.56308017638896 9.3423039567687 8.77778311995596 9.31751363631157 9.51877588068326 8.86854117235792 9.6730912497175 10.0422014650336 9.51580241126434 9.27431397263574 0.110040016549104 0.110068161515320 0.113599895595259 0.1129748916657 0.11048670691322 0.112250840623343 0.112304384193657 0.110913565452946 0.118845666055000 0.114497161468677 0.117646300310767 0.116352305040443 0.116420744806978 0.110790524394346 0.128300093103427 0.109988093366616 0.115631431068086 0.113150586603914 0.121849272463683 1 1 - 4356332 4356854 4356635.273 4355924 4358326 - gene protein_coding_gene FALSE TRUE AT1G12780.1 UGE1 (UDP-D-glucose/UDP-D-galactose 4-epimerase 1); UDP-glucose 4-epimerase/ protein dimerization Encodes a UDP-glucose epimerase that catalyzes the interconversion of the sugar nucleotides UDP-glucose UDP-galactose via a UDP-4-keto-hexose intermediate. Identical to UDP-glucose 4-epimerase (EC 5.1.3.2) (Galactowaldenase) (UDP-galactose 4-epimerase) [Arabidopsis Thaliana] (GB:Q42605;GB:Q9LPX1); similar to UGE3 (UDP-D-glucose/UDP-D-galactose 4-epimerase 3), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT1G63180.1); similar to UDP-glucose 4-epimerase (Galactowaldenase) (UDP-galactose 4-epimerase) (GB:Q43070); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) 0.37633276573194 4.44277166435689 0.00191620296013187 1 5.81338834045547 19.7637164827474 0.37633276573194 0.0738453391886495
AT4G00050_at 5.71765630908317 6.02934589387767 5.65011495639762 5.93023982811744 6.18409852279231 6.4285810419831 8.0465463565638 8.45045560333654 5.4996706083613 7.09524541939487 6.6342318318218 6.63994598683142 6.74285235804408 6.73208257347884 6.71639280853621 7.45382286707656 6.64378958778562 6.65255095176554 7.39714903643504 0.19265496730239 0.192769689745258 0.208689875156085 0.209507789006845 0.188864125006995 0.19737933797226 0.191286004742859 0.196756576839623 0.219375739544505 0.192541275717694 0.197095374619141 0.189946564037538 0.196847503550338 0.194322230849676 0.187951101677651 0.187951101677651 0.196901121930725 0.197478267243317 0.189277746211409 4 4|0 +|/ 18373 19605 19382.778 17792 20066 + gene protein_coding_gene FALSE TRUE AT4G00050.1 UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G61270.1); similar to Os10g0556200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065353.1); similar to putative BP-5 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81566.1); similar to Os01g0286100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042775.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.449902760394454 -4.44117025442482 0.00192043499826939 1 5.81144261550893 13.2751199683846 -0.449902760394454 0.109248728452555
AT4G20480_at 7.97311832663574 8.15746752467703 8.57236239267992 8.33543286011496 8.69491387504435 8.66523896525055 7.79543727230377 8.04279165553113 7.43413162890362 7.7843450439442 7.55765511372797 7.83990842759973 7.72206002670605 7.86069552960334 7.71492364668817 8.14012198494416 7.90900323338197 7.37617565623775 7.61313589519955 0.170905874701155 0.164454059221998 0.173184327468737 0.164934073539231 0.167608210548798 0.167906004606543 0.173221422712497 0.165503411158476 0.180718500737009 0.160372120585185 0.160372120585185 0.160372120585185 0.163537712985121 0.170263352095645 0.167492035880021 0.167249914684972 0.179978069397724 0.163666964373186 0.169431555558129 4 4 - 11034498 11035170 11034843.545 11034283 11035885 - gene protein_coding_gene FALSE TRUE AT4G20480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05400.1); similar to 80C09_3 [Brassica rapa subsp. pekinensis] (GB:AAZ41814.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to Os11g0167300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065838.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.364656879082109 4.43886894745212 0.00192653429336003 1 5.80864570317492 15.9673980965515 0.364656879082109 0.0675101795182888
AT4G34240_at 8.57521332372141 8.98702725405685 8.66895724072266 8.65142179263677 8.6394568651611 7.86253297084534 10.1066110820884 9.76797414179773 8.50405051231137 9.32428722730727 8.6996514819572 8.93127195361074 8.71959290535404 8.93377158844481 8.173975768782 9.08039032521799 8.80276486290938 8.3743492578893 9.09842317881686 0.175976375847999 0.164868314657196 0.172690182326856 0.173911432073741 0.165639375498898 0.172143949869505 0.169744880327284 0.170480084378888 0.198883104847251 0.164868314657196 0.170605801647623 0.164980018053423 0.170071795229212 0.178943729028265 0.171527630255951 0.164868314657196 0.169498823043431 0.178450718054989 0.164868314657196 4 4|0 +|/ 16391878 16392586 16392310.1 16389662 16392828 + gene protein_coding_gene FALSE TRUE AT4G34240.1|AT4G34240.2 ALDH3I1 (Aldehyde dehydrogenase 3I1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)|ALDH3I1 (Aldehyde dehydrogenase 3I1); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase induced by ABA and dehydration Identical to Aldehyde dehydrogenase 3I1, chloroplast precursor (EC 1.2.1.3) (AtALDH3) (ALDH3I1) [Arabidopsis Thaliana] (GB:Q8W033;GB:Q940H4;GB:Q9SYY9); similar to ALDH3H1 (ALDEHYDE DEHYDROGENASE 4), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G44170.2); similar to putative aldehyde dehydrogenase [Brassica rapa] (GB:ABC41273.1); contains InterPro domain Aldehyde dehydrogenase NAD(P)-dependent; (InterPro:IPR012394); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.582365093932891 -4.43460312768662 0.00193789552345407 1 5.80345868647417 17.7524283292950 -0.582365093932891 0.163092789608288
AT1G09240_at 8.62063434706083 8.6484982642649 8.88514534684206 8.86790291299532 8.06335340081465 7.22692886688142 10.1715192272410 10.1427965169921 4.19392056609116 6.02629282525254 5.67906069267141 1.95940210693215 5.83847597706159 4.82853266757238 2.27534318813281 4.61292219583933 6.79226822345273 6.17063792787356 3.89652987522633 0.276394854526420 0.271257733722182 0.271257733722182 0.271257733722182 0.271257733722182 0.279457334089255 0.274221427680323 0.272593987828886 0.281086486464864 0.271257733722182 0.271257733722182 0.279098592066125 0.275463374563564 0.276133702077483 0.290202053829886 0.272896369905432 0.280809378316427 0.282572710736301 0.278685290332276 1 1 + 2985330 2985825 2985591.909 2984883 2986132 + gene protein_coding_gene FALSE TRUE AT1G09240.1 nicotianamine synthase, putative Identical to Nicotianamine synthase 3 (EC 2.5.1.43) (S-adenosyl-L-methionine:S- adenosyl-L-methionine:S-adenosyl-methionine 3-amino-3- carboxypropyltransferase 3) (AtNAS3) (NAS3) [Arabidopsis Thaliana] (GB:O80483); similar to nicotianamine synthase, putative [Arabidopsis thaliana] (TAIR:AT1G56430.1); similar to nicotianamine synthase [Thlaspi caerulescens] (GB:CAC82913.1); contains InterPro domain Nicotianamine synthase; (InterPro:IPR004298) -0.535515086710512 -4.43449736942676 0.00193817810650380 1 5.80333004834478 13.5659280910359 -0.535515086710512 0.144943451493521
AT3G19960_at 8.02140927041543 7.73185058992111 7.28370828589634 7.40502506757452 7.95952480270746 7.6023326165744 6.85835129842758 6.87161118654495 6.50570682055945 6.86761506125351 7.43729233735267 7.31206276147783 7.2013495207335 7.42035607426541 7.57256310248977 7.18809647872512 7.78061786034922 7.44713122664538 7.1112730009952 0.155864232686138 0.159613373299338 0.159714489699348 0.159044865977243 0.159522667183993 0.163238616997712 0.168193658820438 0.176693304330266 0.171570772506756 0.158137534823972 0.16795722483775 0.16157268098432 0.159863099054195 0.173172613600934 0.17537056932587 0.157046380921471 0.164403749187097 0.159058096314467 0.160151607237656 3 3 + 6956171 6956672 6956419.909 6948782 6956972 + gene protein_coding_gene FALSE TRUE AT3G19960.1 ATATM (myosin 1); motor member of Myosin-like proteins similar to ATM2 (ARABIDOPSIS THALIANA MYOSIN 4) [Arabidopsis thaliana] (TAIR:AT5G54280.2); similar to VIIIB (Myosin-like protein VIIB), motor [Arabidopsis thaliana] (TAIR:AT4G27370.1); similar to VIIIA (Myosin-like protein VIIA), motor [Arabidopsis thaliana] (TAIR:AT1G50360.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71526.1); similar to myosin VIII ZMM3 [Zea mays] (GB:AAD31926.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.391788741423194 4.4343867955564 0.00193847360419494 1 5.80319555064074 14.5907926220198 0.391788741423194 0.0823282119984094
AT1G20920_at 5.90808337620058 5.6658755527999 6.12490074495654 6.15097028123849 6.02650305946283 6.12326452436892 5.50913232724429 5.72208889247938 5.40837675528601 5.21622992649241 5.59982457649353 5.75651017381442 5.94571903393456 5.3575478567977 5.08796984024189 5.91861620618853 6.09592049076084 5.90223446157037 5.61963500082871 0.185657289195355 0.176056070695511 0.179535333344169 0.179829073901322 0.177703158024035 0.175707465814382 0.178984120221597 0.181644121197299 0.183836433970177 0.179974759235767 0.178024577943846 0.177411160755888 0.176923039711866 0.180952089075404 0.177464526233440 0.172686203049017 0.177337050218358 0.178215438321002 0.173859371588509 1 1 + 7288270 7288804 7288551.273 7285048 7289767 + gene protein_coding_gene FALSE TRUE AT1G20920.1|AT1G20920.2 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.1.-) (RH42) [Arabidopsis Thaliana] (GB:Q8H0U8;GB:Q9SYP6); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G09620.1); similar to KIAA0801 protein [Homo sapiens] (GB:BAA34521.2); similar to Probable ATP-dependent RNA helicase DDX46 (DEAD box protein 46) (GB:Q569Z5); similar to RNA helicase [Rattus norve (GB:NP_620798.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629)|Identical to DEAD-box ATP-dependent RNA helicase 42 (EC 3.6.1.-) (RH42) [Arabidopsis Thaliana] (GB:Q8H0U8;GB:Q9SYP6); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT3G09620.1); similar to Probable ATP-dependent RNA helicase DDX46 (DEAD box protein 46) (GB:Q569Z5); similar to RNA helicase [Rattus norve (GB:NP_620798.1); similar to PREDICTED: similar to DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Mus musculus] (GB:XP_001000956.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.349205108882589 4.43312864336107 0.00194183931091308 1 5.80166502911106 11.4652473735993 0.349205108882589 0.058444720974727
AT1G09815_at 7.71330048160662 7.97381960406093 7.87783410445657 7.75541635952852 8.23808839711875 8.30932357167973 7.2069854116695 7.5893660721015 6.57434019054445 6.7922120028483 7.04381656534073 6.98354414774702 7.22342320801293 7.21599347129981 6.8471574686325 7.15090819231415 7.07661196279966 7.22282404189997 6.82620416082744 0.155999085321643 0.153718580695001 0.151138544516604 0.159480985886660 0.156752616444102 0.156488005337172 0.169288232561632 0.159657478418297 0.170543006879481 0.15347144029893 0.154274600860931 0.152602492476221 0.153331218776575 0.150808091881997 0.157516141828413 0.158499573436124 0.162912970290334 0.151589101798971 0.159964881634950 1 1|0 +|/ 3189517 3190026 3189801.7 3189371 3190244 + gene protein_coding_gene FALSE TRUE AT1G09815.1 DNA polymerase delta subunit 4 family similar to Os09g0520100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063696.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09725.1); contains InterPro domain DNA polymerase delta, subunit 4; (InterPro:IPR007218) 0.39445690667602 4.43302315628378 0.00194212178727562 1 5.80153669288682 14.7462435837757 0.39445690667602 0.083738742644456
AT1G52150_at 6.23731462808256 6.2239967102973 6.93132577785274 6.3833977079621 7.46463956236138 7.09182192193973 6.26944615646687 5.52982945438845 5.58856902285957 6.7002885493433 6.506990017746 6.41654696869065 6.42899567509894 6.71115053590213 6.36785093291397 6.94830613601234 7.14016094662802 6.44967388725123 6.65212987974548 0.167006568599459 0.166799120030307 0.174844256993137 0.175566489446302 0.166815212880663 0.175067529859611 0.170381604796782 0.186216811646047 0.191062280879824 0.170371467582907 0.166799120030307 0.170965431190367 0.175234331371025 0.166799120030307 0.171200142886616 0.169351870234656 0.179918147105722 0.175826328949386 0.176260321076619 1 1|0 -|/ 19413597 19414388 19414145 19413380 19418347 - gene protein_coding_gene FALSE TRUE AT1G52150.1|AT1G52150.2|AT1G52150.3 ATHB-15 (INCURVATA 4); DNA binding / transcription factor|ATHB-15 (INCURVATA 4) Member of the class III HD-ZIP protein family. Contains homeodomain and leucine zipper domain. Critical for vascular development and negatively regulates vascular cell differentiation. similar to REV (REVOLUTA), DNA binding / lipid binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60690.1); similar to ATHB-8 (HOMEOBOX GENE 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G32880.1); similar to PHB (PHABULOSA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G34710.1); similar to class III HD-Zip protein 5 [Populus trichocarpa] (GB:AAX19054.1); similar to TPA: TPA_inf: class III HD-Zip protein CNA1 [Medicago truncatula] (GB:DAA05767.1); similar to class III HD-Zip protein 6 [Populus trichocarpa] (GB:AAX19055.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.605098204383913 4.43121291838022 0.00194697619880233 1 5.79933403483066 12.9839074256755 0.605098204383913 0.171876337499934
AT4G00860_at 10.8340395519137 10.8555989812297 11.1431395389323 11.2155468240961 10.8907512725529 10.8475449572087 10.8676214102867 11.0050108865362 10.6424204989646 10.6337426663979 11.1371271977539 11.2904875695728 11.0941900949978 10.9973515913132 11.0853691967201 11.1556689789095 11.0798405353611 10.9442029544137 10.5481601944212 0.0931093603141875 0.0947451190224017 0.095126067800479 0.0951922644057172 0.0940967064393673 0.0993758612212501 0.0928026603169745 0.0968152484257857 0.102692318656520 0.094193330517563 0.0974873078423527 0.0922815696331531 0.0933206897377418 0.0967086422661589 0.0956917969912363 0.0926769583578431 0.100484984410817 0.0947788308609193 0.0932571477302852 4 4|0 -|/ 359552 359837 359675.6 359315 360493 - gene protein_coding_gene FALSE TRUE AT4G00860.1 ATOZI1 (Arabidopsis thaliana ozone-induced protein 1) putative pathogenesis-related protein whose transcript level is induced in response to ozone and pathogenic Pseudomonas strains. similar to ozone-responsive stress-related protein, putative [Arabidopsis thaliana] (TAIR:AT1G01170.2); similar to Os06g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056609.1); similar to Os11g0161200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065822.1); similar to Protein of unknown function (DUF1138) [Oryza sativa (japonica cultivar-group)] (GB:AAX95468.1); contains InterPro domain Protein of unknown function DUF1138; (InterPro:IPR009515) 0.311799959495825 4.42926661494151 0.00195221007434220 1 5.7969651584438 21.8104754535819 0.311799959495825 0.0281448168509378
AT2G17730_at 6.87458915208947 7.83509659754281 6.60336885828292 6.75700789091559 6.69712407528936 6.51257386622267 6.14647920096557 6.82185466799168 5.41844318041418 6.07029429539477 4.28375549975922 4.68106449912101 4.78833140090573 4.58333315992322 4.22334717966015 5.01174583658505 4.56576701719678 4.70228904317113 5.70056977184362 0.233243541091866 0.229009836310306 0.233731206924971 0.225400234453208 0.231628629287408 0.232481644900736 0.228421589798628 0.231638247054635 0.256180566126885 0.224530935748484 0.233606009934259 0.234715933387257 0.24128048321661 0.234560067091772 0.239067898539614 0.228226842968275 0.240419592146264 0.239660422692378 0.234743749070667 2 2|0 +|/ 7711681 7712578 7712172.75 7710938 7712832 + gene protein_coding_gene FALSE TRUE AT2G17730.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL2B (NEP1-interacting protein 2) (ATL2B) [Arabidopsis Thaliana] (GB:Q8GT74;GB:Q8GWW3); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G35840.1); similar to Os10g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065202.1); similar to putative NEP1-interacting protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAC79837.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.700900554990157 -4.42721697565081 0.00195773822204043 1 5.79446977477578 11.9483734322081 -0.700900554990157 0.207403708341862
AT4G32400_at 5.36936089686519 5.36466379395761 4.61931039679797 4.61962090955903 4.78249692791761 4.27462402198379 5.50697679067178 5.59799386183327 5.24309789812289 4.86272156502722 4.95556339999838 5.74661833850441 4.99342250839885 4.60160361862453 5.02055701193469 4.87665042975725 4.86902312535156 5.02396892368615 4.6973688844625 0.215532991983124 0.220742013671882 0.229320210977054 0.220903446147595 0.218872980284645 0.222665561867731 0.22120118152996 0.224907869907702 0.24014959317383 0.215251474050268 0.217171673239251 0.219972434183917 0.217273679269980 0.219495976340575 0.222353718117456 0.221654904898275 0.23521486676883 0.224229014791712 0.219439861982400 4 4 + 15639478 15640160 15639857 15638631 15640471 + gene protein_coding_gene FALSE TRUE AT4G32400.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT3G20240.1); similar to brittle 1 protein-like [Solanum tuberosum] (GB:ABA81858.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.404602984053128 -4.42104512179681 0.00197448660075076 1 5.78695114355334 9.9895419676497 -0.404602984053128 0.0892937171570723
AT4G35490_at 7.59918549362574 7.60928360743475 7.41615994524425 7.51455643265314 7.91008055377423 7.95775505839578 7.64486589410411 7.4876600325575 7.37174016078554 7.32073978862098 7.89410244826006 7.88440545564911 7.96906540280838 7.67870728961081 8.0562804154643 7.6184719650901 7.80095925744834 7.65062482973203 7.21308533189237 0.177925724506852 0.178544797657043 0.182643917207607 0.192350879613788 0.182026052819536 0.189644052261231 0.178152510768194 0.184927912855375 0.184126062226641 0.18197428978552 0.186348984188022 0.178833343285122 0.176744219583545 0.188297506072163 0.178140138364908 0.178488611502360 0.189226396979971 0.18462378010031 0.179632462939317 4 4 + 16855951 16856291 16856100.727 16855907 16856679 + gene protein_coding_gene FALSE TRUE AT4G35490.1 ribosomal protein L11 family protein similar to PRPL11 (PLASTID RIBOSOMAL PROTEIN L11), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G32990.1); similar to mitochondrial ribosomal protein L11 [Triticum aestivum] (GB:BAB69029.1); similar to Os10g0466200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064803.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911); contains InterPro domain Ribosomal protein L11, bacterial; (InterPro:IPR006519) 0.315805639913962 4.42099406029234 0.00197462580684271 1 5.78688891125001 15.2029094906108 0.315805639913962 0.0331842784148456
AT4G33480_at 6.86201075155313 6.6842278633857 6.73109748839906 7.0968956259179 7.59578938863629 7.05502394736291 6.12303693747545 6.37505974054913 6.1247410851707 5.83971776815708 6.17935068746689 5.71070813877365 6.13142936600462 6.37843796547056 6.50909722475196 6.1575099804661 6.4367587013412 6.33863874542269 5.64575850200344 0.223480946718396 0.212243526680697 0.213155888302412 0.213231218523223 0.230795384299382 0.225550001163606 0.218038621109878 0.212510510532046 0.233846301288433 0.217247754314126 0.209673878738695 0.210388010358780 0.221253493453305 0.212701250123142 0.215071725520947 0.210837683534485 0.213367892021636 0.216837511881604 0.223999130611079 4 4|0 -|/ 16107872 16108362 16108181.556 16105614 16108649 - gene protein_coding_gene FALSE TRUE AT4G33480.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79278.1); similar to OSJNBb0020J19.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE05783.2); similar to Os04g0692200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054366.1) 0.484393344386663 4.41931398464796 0.00197921200272858 1 5.7848410219814 12.8655496194046 0.484393344386663 0.124954310061637
AT4G29720_at 5.64758563597516 6.39953012843916 4.42674849806329 5.09925050773512 4.90565746823883 5.40427546691843 7.40165720760515 7.73735815770382 5.87071840100255 6.09078752951565 6.67657741400225 7.23150943140985 6.64968455623497 6.71785208979722 6.92574821132798 6.52823127821667 5.89476074886667 5.74804705379774 6.2931222677512 0.228558125978597 0.231779768478207 0.239670899959138 0.242816773064432 0.234025732938347 0.233869268606783 0.235048341243381 0.244014181882025 0.231534781628647 0.245718919438079 0.228558125978597 0.228558125978597 0.228558125978597 0.229555592673417 0.230371969058702 0.228558125978597 0.239909820498926 0.231527131661696 0.234205808348970 4 4 - 14553510 14554022 14553777.364 14553321 14555173 - gene protein_coding_gene FALSE TRUE AT4G29720.1 ATPAO5 (POLYAMINE OXIDASE 5); amine oxidase similar to amine oxidase family protein / SWIRM domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G16310.1); similar to putative polyamine oxidase [Brassica juncea] (GB:AAO16558.1); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.687937257662517 -4.41805465203305 0.00198265719482108 1 5.78330565544384 12.1934715908581 -0.687937257662517 0.203219124708352
AT1G76570_at 7.28772484523428 6.98608872320199 6.99915489911555 7.22753497134465 7.55707579888464 7.11237006764053 8.520514804599 8.44255270888467 7.63318586513369 8.29895802386394 7.53917569515022 7.43851212142788 7.93229968681253 7.87050482482981 7.25934051024506 8.47495223627268 8.12859141228438 7.84704465667698 8.33330039541113 0.154359141185446 0.157772079480107 0.163692290638612 0.157207129559875 0.156411257500067 0.163357542460579 0.152085456374443 0.153219464238124 0.151753840908684 0.155758854938961 0.160042776997630 0.149321617375423 0.154329639817453 0.157899071892342 0.15019106973555 0.155179222510354 0.16499571768741 0.152555011645381 0.153607922725530 1 1 + 28734947 28735595 28735291.909 28734026 28735719 + gene protein_coding_gene FALSE TRUE AT1G76570.1 chlorophyll A-B binding family protein similar to LHCB2:4 (Photosystem II light harvesting complex gene 2.3), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G27690.1); similar to Os09g0296800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062801.1); similar to chloroplast Lhcq-like protein precursor [Ostreococcus tauri] (GB:AAY27551.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.431182560703728 -4.41756466009063 0.00198399942461293 1 5.78270818492885 15.4665191379125 -0.431182560703728 0.101938316950397
AT4G03200_at 9.11822533424649 9.22400997124598 9.0587050778994 8.94629281582983 8.7688042277981 8.56598827628987 9.25421453150376 9.16247883900173 8.17138388581983 8.8714635375349 7.92916453691992 8.17938765286896 8.37141943315915 8.04119170953267 8.42834268257697 8.61452783124025 8.37679755497049 8.34834606594523 8.73849616473493 0.147661779293187 0.148660325248643 0.147022607270739 0.145817648925592 0.144158932521334 0.152685113683457 0.146769170829103 0.150697656206812 0.163994213471426 0.145715208174232 0.148499125877116 0.149121978374721 0.149260535967595 0.154322069785185 0.157158856685118 0.144158932521334 0.162902380013991 0.157354561328276 0.145914404407857 4 4|0 +|/ 1411682 1412486 1412114.556 1408159 1412756 + gene protein_coding_gene FALSE TRUE AT4G03200.1 similar to PREDICTED: similar to sperm protein SSP411 [Tribolium castaneum] (GB:XP_973977.1); similar to cold-induced thioredoxin domain-containing protein [Ammopiptanthus mongolicus] (GB:ABI97349.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Protein of unknown function DUF255; (InterPro:IPR004879); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain N-acylglucosamine 2-epimerase-type; (InterPro:IPR013330) -0.331209291086685 -4.41620878769878 0.00198771865475200 1 5.78105468054641 17.4523040739427 -0.331209291086685 0.0468772642749764
AT2G38310_at 8.85979029865354 9.16003088294166 7.62583855634398 7.78714939693774 8.38356678462113 8.1872849598006 6.87349137160186 7.39478505476058 8.86850944557908 8.22919366010862 8.35732414669286 8.01183632351677 6.77755595692704 7.98622658589482 7.64254800793888 8.45825699446216 6.15830123142827 7.44806564148465 8.22192439699521 0.148415433949385 0.152633951288415 0.142010042763825 0.142194193970626 0.142666175891621 0.151932336150134 0.152749052313378 0.141811617291457 0.156714898536705 0.146874178192177 0.148363942860380 0.142780913316617 0.166823735446061 0.144920186331652 0.144786771752270 0.140028066808478 0.189218993331621 0.142848889664125 0.149355463328415 2 2 + 16057450 16057875 16057658.7 16057141 16058246 + gene protein_coding_gene FALSE TRUE AT2G38310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05440.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84653.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.455462975373999 -4.41133316593862 0.00200115491384584 1 5.77510606908455 16.0564372608430 -0.455462975373999 0.113008704356081
AT1G65820_at 11.2816892793119 11.6020052769413 11.7417631565919 11.8370312337162 11.6694686667658 11.2792692446333 10.6429984904807 10.7780009908111 10.4392214128833 10.4836008448243 10.7609427861703 10.6911697266576 10.8531126289757 10.8206120419608 10.4450540507226 10.7443393194353 10.1386083706974 10.6915530530402 10.2196992477371 0.0861773298318971 0.0816553304815998 0.0857604712260618 0.087737720367051 0.0835963076528093 0.0902170512827396 0.0842150911860178 0.0817853425225085 0.0867576850948965 0.0842845421010187 0.0844039316900108 0.0820715366112265 0.0825127020691125 0.0839357592724538 0.0829652204502112 0.0813098355741377 0.0956107903899829 0.083219492284697 0.085154089525271 1 1|0 +|/ 24488946 24490308 24489512.2 24488764 24490555 + gene protein_coding_gene FALSE TRUE AT1G65820.1 microsomal glutathione s-transferase, putative similar to Os03g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051042.1); similar to MAPEG family, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95670.1); contains InterPro domain Membrane-associated proteins in eicosanoid and glutathione metabolism (MAPEG); (InterPro:IPR001129) 0.409021530716584 4.4099557220668 0.0020049685747823 1 5.77342471519631 21.8660355419177 0.409021530716584 0.0919243844502544
AT3G27930_at 6.51734724434614 6.39340671415416 5.70489734892053 5.60125192683884 6.24838250891075 5.6958552502403 6.59706287806108 6.38887492824897 5.38919276222145 5.85110853850779 5.39241264144611 5.0334802658758 5.18286357836118 6.03896352877758 5.85233759374702 5.79973656294618 5.62136687495978 5.37421915000028 6.02029247670291 0.231216297117815 0.230436147259814 0.241680538615963 0.243697155879367 0.235921018661011 0.242303675996943 0.234098473983330 0.230943229841920 0.233057305245295 0.230436147259814 0.232335058905747 0.231431878197684 0.242183443100768 0.23385963755435 0.232044558711809 0.230436147259814 0.24450250122876 0.232078057478413 0.238857304086228 3 3|0 -|/ 10370832 10372057 10371378.9 10370536 10373675 - gene protein_coding_gene FALSE TRUE AT3G27930.1 similar to hypothetical protein MtrDRAFT_AC124951g14v1 [Medicago truncatula] (GB:ABE84845.1); similar to Os05g0577800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056409.1) -0.439092458552394 -4.40797863441777 0.00201045612435507 1 5.77101082130547 11.7886117417942 -0.439092458552394 0.105936062668243
AT3G22210_at 11.0758147130887 11.0962589091519 10.9536303667331 10.8194158896683 11.2838667062983 11.0263630685775 11.6760267597906 11.6202439616351 11.4982746803587 11.5639378108607 11.3544845450186 11.1622777955430 11.2089628111102 11.2001398622644 11.0459869626225 11.3770293998959 11.0562397515642 11.0377192882594 11.4589868303445 0.0811894652317302 0.0784739578452114 0.0824320077268607 0.0824161278478161 0.0784739578452114 0.08353334071399 0.0818167120069714 0.0830202476101091 0.0793785380269329 0.0831145881326359 0.0804597683777884 0.0801069306542669 0.0832848004310158 0.08309200394254 0.0812571699766752 0.0796104524023331 0.0857234168901004 0.0819914537846033 0.0809540055297362 3 3|0 -|/ 7839187 7839409 7839306.4 7838791 7839474 - gene protein_coding_gene FALSE TRUE AT3G22210.1 similar to fortune-1 [Cycas edentata] (GB:AAL35744.1) -0.336489233291912 -4.40647490454423 0.00201464066281801 1 5.7691743967157 22.5376632931460 -0.336489233291912 0.0512929279736854
AT1G77770_at 6.84410774200443 7.01673946539533 6.89619789183082 7.03823020906747 7.07469458113254 6.75637543230852 5.83264745833728 6.27612690642254 6.47116026542428 6.05939211601146 6.33910281340617 6.77034912887091 6.5002032777884 6.59528575889227 6.31140710456345 6.71744711654666 6.10295015514808 6.66922007405305 5.73639419434826 0.192714055405030 0.193764948549749 0.187417831859471 0.192222977502091 0.197162401306711 0.185247720404207 0.194303115350837 0.187406339610595 0.185574532944690 0.186483451385401 0.19094530776046 0.187186465188307 0.189548427458384 0.187142625766282 0.188873452813254 0.193696093268293 0.188536970540266 0.193043677111061 0.192367513691165 1 1 - 29251375 29251905 29251625.091 29250968 29252922 - gene protein_coding_gene FALSE TRUE AT1G77770.1|AT1G77770.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08460.2); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.430366311137783 4.40592870050191 0.00201616294563278 1 5.7685072466341 13.0117538961057 0.430366311137783 0.102084063514689
AT2G25625_at 6.18789490575889 6.15371703801316 7.44564602231729 7.46708609093006 7.34567558536804 7.11900001260565 8.1575118769803 7.68345918793103 5.84458458277835 6.38295981483002 3.58527109055692 4.2345332505353 5.88749550887286 4.90611159188697 2.83141037650704 6.66134341660869 7.12826314018317 3.9822877459114 5.81722705391991 0.262990575736699 0.256400798310507 0.25925704700659 0.256400798310507 0.258012416605957 0.264671833812456 0.262333167808982 0.263461456933629 0.268410662133636 0.256400798310507 0.278050409564011 0.263855563443451 0.260570353585691 0.266640290754539 0.28052309128315 0.256400798310507 0.260806969726706 0.273223601636659 0.256400798310507 2 2 + 10913652 10914116 10913891.818 10913532 10914366 + gene protein_coding_gene FALSE TRUE AT2G25625.1|AT2G25625.2 similar to Os05g0575000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056395.1) -0.407064063204442 -4.40503534188192 0.00201865542609116 1 5.76741595617883 12.6535055061425 -0.407064063204442 0.0912008866170595
AT4G04830_at 9.19577664272315 9.77395992756723 9.55874957150164 9.76157990197434 9.87730509634975 9.399930420238 10.2471826974554 10.3247821057595 8.18773290504325 9.8430741660952 8.54275110451846 5.97069936532576 8.70179614337704 8.90498566802684 5.32524880209395 8.57822109531526 9.50312463220712 8.80824270252741 8.42933590895667 0.154362594237345 0.158729743508704 0.153508476019527 0.153508476019527 0.159296817385297 0.160225652404128 0.157541466354375 0.159258763760997 0.169093897897298 0.156266401190697 0.158966468086384 0.168675768106598 0.157386250686856 0.165255771302364 0.194941700077687 0.156017722947465 0.164291531590480 0.161621080890216 0.155377140896311 4 4 + 2445906 2446840 2446481 2445857 2447082 + gene protein_coding_gene FALSE TRUE AT4G04830.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04810.1); similar to Os03g0360700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050156.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72582.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) -0.507099033359056 -4.40226429401881 0.00202640780960396 1 5.76403004678161 18.1983739700490 -0.507099033359056 0.135087351070974
AT1G15980_at 11.0563188255111 11.1120991308348 10.7842775440964 10.8683760623704 11.1333893473102 10.7482498064626 11.9504460863816 11.798418255455 12.1245740725099 12.2049706891547 12.0382490672731 12.0750270324690 11.7835807923914 12.0605925981520 11.8720370278184 12.1832761914218 11.8388705738468 12.1774718148072 12.1303590958495 0.0782445318555004 0.0758279642139304 0.0826889908406756 0.0778278271352725 0.0768940288743818 0.0786935510702532 0.080309996501039 0.0758279642139304 0.0890685580923267 0.0758279642139304 0.0798193446938028 0.0760153265363223 0.0768731991936935 0.0803503709436833 0.0788385778208826 0.0761080386531149 0.083517660567702 0.0758279642139304 0.0758279642139304 1 1|0 +|/ 5490370 5491169 5490759.444 5489292 5491357 + gene protein_coding_gene FALSE TRUE AT1G15980.1 similar to Os08g0276100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061432.1); similar to COG0859: ADP-heptose:LPS heptosyltransferase [Nostoc punctiforme PCC 73102] (GB:ZP_00111141.1); contains domain UDP-Glycosyltransferase/glycogen phosphorylase (SSF53756) -0.372705266525651 -4.40195305549453 0.00202728054210706 1 5.7636496622499 23.2599165938580 -0.372705266525651 0.0737523428510677
AT2G03750_at 8.73795511380672 9.3291144771796 8.22701621084828 8.40773991792818 9.00609607678703 8.85433059224608 9.6703354633343 10.0759612533218 9.81779316126404 10.0035843282701 9.8280152853171 10.0439888422979 9.70117801561642 9.85377137239865 9.58249575021015 10.0086292406149 9.52248636960596 9.714772117235 10.0121006692122 0.163765003245705 0.150743471081433 0.170131684723813 0.172372005173441 0.154159806542400 0.155421421750692 0.159406306104347 0.157899494557387 0.155929660052804 0.151561642257136 0.154626867825108 0.154268072096360 0.154025986387570 0.156421365185092 0.155774867039906 0.148256367643264 0.159615191467862 0.148256367643264 0.148256367643264 2 2 - 1147968 1148535 1148295.273 1147804 1149058 - gene protein_coding_gene FALSE TRUE AT2G03750.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT3G45070.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) -0.496060736439169 -4.40124277369064 0.00202927373316581 1 5.76278151633689 18.9017735600536 -0.496060736439169 0.130618502555298
AT3G05560_at 10.5149607480522 10.5740709235996 10.1252684569337 10.206817501947 10.0641489290191 9.8633018806744 10.6937348468946 10.9213601263098 10.1136664012423 10.2755118639947 10.1327091912092 10.4129602648563 10.0408581338369 10.1272148389025 10.7400044104222 9.72219814530068 9.73663756361109 9.88979432258506 10.1300656201317 0.0978128801895818 0.0954653077301664 0.0939260546317227 0.094767743163745 0.101223493732347 0.106337597123102 0.102092084559802 0.100006861392674 0.116802946575962 0.093335978838501 0.096896755197671 0.0999911146918387 0.0932757012442768 0.095086229041556 0.0924208640770968 0.094735621484971 0.112034536482954 0.100654913269595 0.0924208640770968 3 3 + 1614648 1615114 1614784.455 1614184 1615512 + gene protein_coding_gene FALSE TRUE AT3G05560.1|AT3G05560.2|AT3G05560.3 60S ribosomal protein L22-2 (RPL22B)|structural constituent of ribosome Identical to 60S ribosomal protein L22-2 (RPL22B) [Arabidopsis Thaliana] (GB:Q9M9W1); similar to 60S ribosomal protein L22 (RPL22C) [Arabidopsis thaliana] (TAIR:AT5G27770.1); similar to Ribosomal L22e protein [Medicago truncatula] (GB:ABE92854.1); contains InterPro domain Ribosomal L22e protein; (InterPro:IPR002671) -0.341965827676459 -4.40111850488563 0.00202962267279676 1 5.76262961879845 20.5071471286605 -0.341965827676459 0.0553496518101688
AT2G39050_at 7.72582767697884 7.58920208422225 8.38654840454502 8.48621440063356 7.27519170650763 7.75733169448299 7.41305319543839 7.7962025452233 4.93244644364464 5.78874679294683 5.64167262345572 4.90885330917321 6.49184434560259 6.07235508150028 5.47895945576241 6.20431553755244 7.30722621056553 5.78628193024338 5.5833052035086 0.206978889232472 0.206978889232472 0.209770781731092 0.208835683671148 0.212967686692661 0.210627086424699 0.21271696907186 0.207892154801097 0.22739537512798 0.207042459245686 0.225361343441344 0.212386941298352 0.21777118960835 0.215415797796107 0.21686829160512 0.208708244356193 0.210356818511813 0.209416438142077 0.216796789416642 2 2|0 +|/ 16310910 16312137 16311319.2 16310481 16312707 + gene protein_coding_gene FALSE TRUE AT2G39050.1 hydroxyproline-rich glycoprotein family protein similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to osr40g2 [Oryza sativa] (GB:CAA70174.1); similar to Os07g0683600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060666.1); similar to Os01g0104400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041764.1); contains InterPro domain Ricin B lectin; (InterPro:IPR000772); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) 0.44842796222093 4.39819650018442 0.00203784613919951 1 5.75905716586832 13.5143321510533 0.44842796222093 0.110519793895589
AT3G47560_at 8.6165369479138 8.73232212347189 8.25471661966771 8.12734125299094 8.70100857093793 8.36020015181192 9.17616285439443 8.99866377240805 9.46572764730474 9.3835075967586 9.35436148480155 9.3409445497975 8.74943262985223 9.22933335941851 9.37698223286893 9.19223111238074 8.87082129837905 9.2395003550155 9.32249327780483 0.115542443126206 0.108171683914961 0.123700745316564 0.119737962951729 0.111538863115182 0.115458732529009 0.105956369861923 0.109978003886493 0.109743469936388 0.111870395994700 0.111744555281784 0.105956369861923 0.107939731599420 0.117066548219305 0.108868978349118 0.108031603079628 0.111827145168991 0.106734366615441 0.117108844338757 3 3 - 17536671 17537298 17536996.455 17536470 17538037 - gene protein_coding_gene FALSE TRUE AT3G47560.1|AT3G47560.2 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G29840.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0580000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043403.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379)|similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G29840.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.37074003591836 -4.39777798292628 0.00203902691609291 1 5.75854535995221 17.9007575625847 -0.37074003591836 0.0728654658220577
AT3G53560_at 7.60632035757215 7.93581963100467 7.56784920458167 7.45327518422546 6.94966995229489 6.93022108790238 8.073407279595 8.23013456116727 7.7506818900985 7.9615286073218 7.41832709337942 7.8332347221646 7.66548809691964 7.78045316365 8.22605239593463 8.18026916576733 7.55909140669281 7.64628426078087 7.59952449293328 0.159588843636686 0.156364732968943 0.161357286372282 0.169795184856726 0.156639912064546 0.172862467615564 0.163337894419181 0.160138069182109 0.164006229349197 0.154854422683713 0.155173590431352 0.162634087315274 0.154660341787740 0.156737995448092 0.160719299475982 0.160255548671180 0.162393568863891 0.156396308678821 0.153417323538273 3 3 - 19870932 19871423 19871198 19870605 19872009 - gene protein_coding_gene FALSE TRUE AT3G53560.1 chloroplast lumen common family protein similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1); similar to TPR repeat [Medicago truncatula] (GB:ABE81686.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.359047446020187 -4.39642829657153 0.00204283985253180 1 5.75689461092451 15.3729513414324 -0.359047446020187 0.0662685661711881
AT2G16900_at 5.33028952831339 5.09316463140617 6.14006788962622 6.20684917332293 5.78441607873258 5.19304276186305 5.20745265729099 4.83272866386534 4.66825935879512 5.05103166221267 5.22184620136826 5.41481887254457 5.00908174686575 5.47345291874367 5.38846468395322 5.32619709903116 4.63262287415369 5.1625094742952 5.09823824335089 0.172053042877640 0.173891212404336 0.176403442347224 0.181863907363800 0.175722780514129 0.172613888809820 0.177511460052937 0.174365135288808 0.179196839345328 0.177607554542996 0.174166238132472 0.172000885979301 0.171576186978829 0.171576186978829 0.174688038639680 0.176480731705804 0.177584234520703 0.18449373525423 0.175443291263605 2 2 - 7330939 7331455 7331260.909 7330697 7333303 - gene protein_coding_gene FALSE TRUE AT2G16900.1|AT2G16900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35110.3); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.489816459041886 4.39261276304232 0.00205366052302732 1 5.75222621421777 10.5449017507138 0.489816459041886 0.128437392731151
AT3G62300_at 4.64518363504652 4.93872351371221 4.900334846729 4.99652593277416 5.77145799339048 5.5008781196559 5.14150664567243 5.11419902412056 4.73283098460962 4.44345085653836 5.34324151794944 5.46860892714826 4.77749206404844 5.47651778612594 5.3568277076504 5.24369342218495 4.34275044122462 4.80582129630419 4.92303718629094 0.231183928318625 0.230484711630848 0.234340524955468 0.231710898358022 0.230447228532753 0.238090208245551 0.235727701984047 0.231019237025699 0.239517482796866 0.238954350844588 0.234383009675029 0.230595801328108 0.235827982882623 0.234904736255906 0.235536510854411 0.229661996379599 0.249116191553244 0.242305189111172 0.233352929910724 3 3 + 23067463 23068020 23067724.364 23065079 23068163 + gene protein_coding_gene FALSE TRUE AT3G62300.1 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G47230.1); similar to Agenet domain containing protein [Brassica oleracea] (GB:ABD65016.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Protein of unknown function DUF724; (InterPro:IPR007930) 0.367246077341341 4.39132322777408 0.00205733152089933 1 5.75064784722957 10.0269222911256 0.367246077341341 0.071221520919596
AT2G35960_at 7.71843885210089 8.23308289516893 6.19055717043697 6.65148532171598 6.92381473725226 7.22765709402059 9.04703470584792 9.4899134967544 7.57492119360365 8.14728000370743 8.7031203611452 9.28238162204824 9.05354333834768 9.09924480056723 8.75208322343707 9.11888515689665 7.64675935562156 8.52508742422204 8.25422455861057 0.165368593101614 0.157753652236718 0.16913035525624 0.162491481949481 0.153867489689301 0.161048751497084 0.145364942536508 0.157191824731518 0.165885767106911 0.150084030625368 0.147631690554535 0.155968443346439 0.150922073064934 0.153294861382375 0.146537539772919 0.147807811814295 0.163302911232279 0.146715287142082 0.149943053459529 2 2 + 15114274 15114717 15114491.636 15114019 15115070 + gene protein_coding_gene FALSE TRUE AT2G35960.1 NHL12 (NDR1/HIN1-like 12) Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine. similar to NHL22 (NDR1/HIN1-LIKE 22) [Arabidopsis thaliana] (TAIR:AT4G09590.1); similar to Os12g0159600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066211.1); similar to H0913C04.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86171.1); similar to Os11g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065799.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) -0.546621332483211 -4.39058299987965 0.00205944196311936 1 5.74974168760281 16.0676380736254 -0.546621332483211 0.151437668596382
AT3G10030_at 5.65379891190685 5.73579246571015 5.41566154998462 5.87776851860764 6.05102861307092 6.44862126984878 5.06010491790273 4.81903105138348 4.89512965641188 5.15985314283965 5.66344045073472 5.31235949552898 5.33064081856043 5.38509150217919 5.06265932771622 5.8363473152017 5.7024881771464 4.86176293862121 5.28400079812585 0.215085081633164 0.214701038055111 0.211318181265085 0.223634502039236 0.226686397695106 0.224929888152431 0.213883864527668 0.215039706954721 0.225049072543015 0.219141272388729 0.211145060394839 0.221709310248225 0.215096260100865 0.226921241057036 0.215271263555670 0.211145060394839 0.215268303585958 0.226781440879339 0.227437881298750 3 3|0 -|/ 3092703 3093518 3093089.8 3092028 3094950 - gene protein_coding_gene FALSE TRUE AT3G10030.1|AT3G10030.2 aspartate/glutamate/uridylate kinase family protein similar to aspartate/glutamate/uridylate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18680.1); similar to MADF; Uridylate kinase; Homeodomain-related [Medicago truncatula] (GB:ABE89083.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048)|similar to aspartate/glutamate/uridylate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G18680.1); similar to Aspartate/glutamate/uridylate kinase; MADF; Homeodomain-related [Medicago truncatula] (GB:ABE80123.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048) 0.456221185952083 4.38934475440494 0.00206297750040623 1 5.74822565387274 10.886397555137 0.456221185952083 0.114329074526384
AT4G30210_at 8.18002502231327 8.38933710279999 8.44032967006113 8.58313174566327 8.77666123708971 8.62123144408258 8.94600583772504 8.99633796372647 8.48261447288815 8.49392410752323 9.55039200706563 9.42270404560933 9.18618295748708 9.44940231495366 8.69532490899735 9.2595298194889 8.8634161803929 8.87602432792385 8.42592364302012 0.154881831600849 0.151574376935791 0.165144865206993 0.150880493496644 0.153268375255636 0.15781114706482 0.155981676059153 0.162158467962977 0.179585630628790 0.153970680591394 0.151104966012797 0.156010010729449 0.154931750028039 0.161388468862667 0.158502086819776 0.153433923052163 0.167948785764976 0.162669085639219 0.155032337788992 4 4 + 14799786 14800386 14800010.909 14796770 14800928 + gene protein_coding_gene FALSE TRUE AT4G30210.1|AT4G30210.2 ATR2 (ARABIDOPSIS P450 REDUCTASE 2) Encodes NADPH-cytochrome P450 reductase that catalyzes the first oxidative step of the phenylpropanoid general pathway. similar to ATR1 (ARABIDOPSIS CYTOCHROME REDUCTASE) [Arabidopsis thaliana] (TAIR:AT4G24520.1); similar to putative NADPH-cytochrome P450 reductase [Pisum sativum] (GB:AAC09468.2); similar to NADPH-cytochrome P450 oxydoreductase isoform 2 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK15260.1); similar to NADPH-cytochrome P450 oxydoreductase isoform 3 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK15261.1); contains InterPro domain FAD-binding; (InterPro:IPR003097); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavodoxin-like; (InterPro:IPR001094); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.336398352506158 4.38897481068651 0.00206403506043562 1 5.74777266362593 17.4318122419579 0.336398352506158 0.0521741080098718
AT1G68530_at 11.1600606973408 11.3201968367444 11.6849079975117 11.6981251020453 12.2760761172380 11.7316741422961 11.7572885906524 11.7449383341551 11.8461015508405 11.6640998417414 12.3610235989826 12.1012150186893 12.3012235364771 12.2804526727670 11.8185000625380 12.0588233357290 11.9388991222476 12.3299929896241 11.4700472596557 0.107446506125254 0.101609889999690 0.102664183044517 0.107431811159441 0.104889345892341 0.116111078896587 0.101416717293208 0.104230703907319 0.114105806483732 0.102611036169501 0.102208147571687 0.0999821430022464 0.100200410493894 0.102704807177167 0.100580795075599 0.0999821430022464 0.10449633261506 0.103908462228199 0.103828033115926 1 1 - 25716576 25717445 25716927.182 25716251 25718470 - gene protein_coding_gene FALSE TRUE AT1G68530.1|AT1G68530.2 CUT1 (CUTICULAR 1); acyltransferase involved in wax biosynthesis; required for elongation of C24 very-long-chain fatty acids Identical to 3-ketoacyl-CoA synthase 6 (EC 2.3.1.-) (KCS-6) (Very-long-chain fatty acid condensing enzyme 6) (VLCFA condensing enzyme 6) (Cuticular protein 1) (CUT1) [Arabidopsis Thaliana] (GB:Q9XF43;GB:Q56ZC4;GB:Q8VYJ5); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G25450.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93245.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328)|Identical to 3-ketoacyl-CoA synthase 6 (EC 2.3.1.-) (KCS-6) (Very-long-chain fatty acid condensing enzyme 6) (VLCFA condensing enzyme 6) (Cuticular protein 1) (CUT1) [Arabidopsis Thaliana] (GB:Q9XF43;GB:Q56ZC4;GB:Q8VYJ5); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G25450.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601) 0.420379066551141 4.38857686875856 0.00206517331064408 1 5.74728536265141 23.5760830653535 0.420379066551141 0.098252433344835
AT1G29390_at 9.5952747827566 9.7235793459457 9.71318004989424 9.64807096242103 10.1336874980276 9.7295725797129 9.70645335321167 9.64014047772507 9.75900958386013 9.39679688911082 10.4444306597818 10.0667404774479 10.0944459735292 10.1637024464395 10.1256578620845 10.3537749571697 9.86655534769971 10.1964399449085 9.51130130715864 0.106616717573483 0.10188555985478 0.106434764124772 0.110750675848389 0.101655138045283 0.122641427908427 0.108142759458720 0.102431023479418 0.116894290377327 0.101655138045283 0.106880838779577 0.101655138045283 0.103628735041587 0.109208482491662 0.105514269783943 0.101705063104811 0.111280206979597 0.111295105801787 0.102731936196137 1 1|0 -|/ 10286399 10287749 10287089.889 10286279 10288089 - gene protein_coding_gene FALSE TRUE AT1G29390.1|AT1G29390.2 COR314-TM2 (cold regulated 314 thylakoid membrane 2) encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Possibly targeted to thylakoid membrane. similar to COR414-TM1 (cold regulated 414 thylakoid membrane 1) [Arabidopsis thaliana] (TAIR:AT1G29395.1); similar to cold acclimation protein COR413-TM1 [Triticum aestivum] (GB:AAO24627.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.374015823930118 4.38794287326742 0.00206698815091641 1 5.7465089430018 19.5960804072164 0.374015823930118 0.0751159947972984
AT1G58360_at 9.3012705089309 9.5030544748848 9.96976216155515 10.0737938758543 10.1849007611841 10.1134231270721 10.0861139234706 10.1518902648141 9.33469179174226 9.7772567685231 9.87490431647263 9.59939837404142 9.77605839867247 9.42945795496718 9.43880816465157 9.4687000041553 10.1846491978806 10.0592867815580 9.10625445856362 0.121022189670881 0.108999530983597 0.11302160744372 0.111030411484008 0.113723461818184 0.117105887840573 0.115494935824498 0.115936341002299 0.124494424963562 0.112404442089517 0.115261667541461 0.113290437760277 0.110281340271741 0.108755729914614 0.118634799946912 0.112433677954403 0.116063284722295 0.110786933702755 0.119775568759716 1 1 + 21683294 21683870 21683528.182 21680195 21684148 + gene protein_coding_gene FALSE TRUE AT1G58360.1 AAP1 (AMINO ACID PERMEASE 1); amino acid permease neutral amino acid transporter expressed in seeds similar to AAP6 (AMINO ACID PERMEASE 6), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G49630.1); similar to AAP8 (amino acid permease 8), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G10010.1); similar to amino acid permease 1 [Brassica napus] (GB:CAD92449.1); similar to amino acid permease 6 [Brassica napus] (GB:CAD92450.1); similar to amino acid transporter [Solanum tuberosum] (GB:CAA70968.2); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.323863957249112 4.38780909291784 0.00206737132241750 1 5.74634510031809 19.4905139232172 0.323863957249112 0.0427325706484138
AT4G32190_at 9.06206403421794 9.26910959722023 9.36395366007468 9.45212183003586 9.2488798395312 9.371207802285 10.1591022851048 10.2364353485348 10.0373388573128 10.4336573826743 9.97943854535107 9.85258258910424 9.8740969562446 9.8812934180993 9.4760496076800 10.2471975575445 9.99321654858331 9.92945551792218 10.2413800018879 0.0881242887506141 0.0855592759228646 0.0822171291636492 0.0866197091514118 0.0842673456166993 0.087119368327264 0.0819809592861736 0.0845164726401882 0.0885470081538138 0.0818203476218238 0.0818203476218238 0.0861415898839132 0.0857846475693736 0.0900738817624673 0.0904579842791091 0.0828156613284474 0.0868144221703007 0.0841131324718438 0.082733893176858 4 4 + 15547098 15547648 15547398.273 15544884 15547861 + gene protein_coding_gene FALSE TRUE AT4G32190.1 centromeric protein-related similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to Os02g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046120.1); similar to hypothetical protein AYWB_353 [Aster yellows witches'-broom phytoplasma AYWB] (GB:YP_456549.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.327964719006647 -4.38290820124755 0.00208146121687619 1 5.74034070015485 19.5911718445545 -0.327964719006647 0.0463017526336631
AT3G55850_at 6.68992058701801 6.57991588052663 6.17200709244332 5.57634948006026 5.69253930450904 5.23003606209199 5.37189025762078 5.37348328846481 4.95055049041794 4.87302205041636 4.37704485422803 4.70359006861324 4.27120717310507 4.75719352078044 4.34859439467331 4.42727255281585 4.13283543764801 4.57359442380835 5.49687898305547 0.253764635238863 0.256816606489077 0.254601212935124 0.253224620475719 0.258894985950671 0.273490026066446 0.260501610060313 0.258971163040300 0.256241165401488 0.255858681105056 0.25093509081068 0.262935607658258 0.262144898271134 0.255925008367298 0.255552599535189 0.251335594494588 0.259433970909186 0.254850932695217 0.255793489414338 3 3|0 -|/ 20732956 20733738 20733351.222 20732699 20736872 - gene protein_coding_gene FALSE TRUE AT3G55850.1|AT3G55850.2 LAF3/LAF3 ISF1/LAF3 ISF2 (LONG AFTER FAR-RED 3); hydrolase Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 1 only in the first few N-terminal amino acids.|Encodes a product that might regulate nucleo-cytoplasmic trafficking of an intermediate(s) involved in phyA signal transduction. Differs from isoform 2 only in the first few N-terminal amino acids. similar to Os01g0952700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045422.1); similar to Amidohydrolase 3 [Acidobacteria bacterium Ellin345] (GB:YP_592518.1); contains InterPro domain Metallo-dependent hydrolase, composite; (InterPro:IPR011059); contains InterPro domain Amidohydrolase 3; (InterPro:IPR013108); contains InterPro domain Amidohydrolase-like; (InterPro:IPR011550) -0.496985070026146 -4.38216108549209 0.00208361821300993 1 5.73942498249956 10.6136346080113 -0.496985070026146 0.131887730001573
AT1G30270_at 7.18656533741347 7.63413781778042 7.75662340643998 7.96474073010817 8.93292227913301 7.67163825365228 6.81738529560298 5.95932250549625 5.57576031198164 6.26023191605487 6.33574637302955 6.88184585290207 7.3733899748983 6.85330158058466 5.92016870139184 7.17638260907447 7.04450217466925 6.71996837688973 6.73743432477618 0.26517561579638 0.247668613168527 0.271591138918005 0.260468438390473 0.257075684085966 0.254345615632372 0.247378509087684 0.253436502515581 0.260031136144147 0.245462827096038 0.245462827096038 0.251967507631052 0.253450078031287 0.254173200269448 0.259194806719456 0.245462827096038 0.26882257014542 0.253040197098345 0.253351675951105 1 1|0 +|/ 10657257 10658468 10657747.778 10654869 10658993 + gene protein_coding_gene FALSE TRUE AT1G30270.1|AT1G30270.2 CIPK23 (CBL-INTERACTING PROTEIN KINASE 23); kinase Arabidopsis thaliana CBL-interacting protein kinase 23. CIPK23 serves as a positive regulator of the potassium transporter AKT1 by directly phosphorylates AKT1. CIPK23 is activated by the binding of two calcineurin B-like proteins, CBL1 and CBL9. similar to CIPK9 (CBL-INTERACTING PROTEIN KINASE 9), kinase [Arabidopsis thaliana] (TAIR:AT1G01140.1); similar to CBL-interacting protein kinase 24 [Populus trichocarpa] (GB:ABJ91230.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95889.1); similar to CBL-interacting protein kinase 25 [Populus trichocarpa] (GB:ABJ91231.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.889574724709587 4.38035196850865 0.00208885128315025 1 5.7372071875424 13.9800696480538 0.889574724709587 0.27746783568452
AT1G53710_at 5.5761587623854 5.71939047355279 5.65039154677981 5.40239841363035 5.18595553025116 5.19479604576659 4.19978557223672 4.24285099838973 4.65754251673604 3.84657975250422 4.49318031952353 4.38069572911355 4.35643749768372 4.38527070471899 4.36516408929439 4.45890944797988 4.43158915114995 4.75539165730053 4.13093330471972 0.238743447655605 0.236277596285333 0.232489751503111 0.231441077661734 0.227296021754802 0.242676312192519 0.228024221980569 0.222776475371133 0.234185386301256 0.228771118036001 0.225138977360317 0.224288067355108 0.233655897771776 0.228918788237429 0.220631837031251 0.223940199821382 0.225289728408081 0.220631837031251 0.224351543163805 1 1 - 20057043 20058489 20057943.2 20056829 20060064 - gene protein_coding_gene FALSE TRUE AT1G53710.1|AT1G53710.2 protein serine/threonine phosphatase| similar to Metallophosphoesterase [Medicago truncatula] (GB:ABE82070.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.332741782870695 4.37834653166235 0.00209466876671287 1 5.73474803973624 9.47897342583185 0.332741782870695 0.0501406896268347
AT3G07910_at 8.07083474182948 8.15185241661433 8.32178351107288 8.34772747912489 8.6368213529491 8.21977010983238 8.3646934102932 8.26460601087486 7.66617251261966 7.96639513965525 8.44278133887636 8.7261461481539 8.2875791907809 8.34105026344387 8.66930110913252 8.41500939070039 8.39918492954048 7.9354528567585 7.83546150150685 0.107163124794219 0.103443740029548 0.103167735029458 0.103679294558379 0.102118012028235 0.102048994226369 0.102085774281665 0.103834417860442 0.109888846191841 0.103762061308701 0.102905169769105 0.100631895102594 0.108659174675702 0.112414733797926 0.0992821096032184 0.0984626755365366 0.122396426618632 0.105819424394297 0.110125327168557 3 3|0 -|/ 2523387 2524017 2523617.625 2523163 2524171 - gene protein_coding_gene FALSE TRUE AT3G07910.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51812.1) 0.373957868585644 4.37534627195731 0.00210340467014811 1 5.73106765631907 16.4096308980825 0.373957868585644 0.0756678781707148
AT3G12600_at 6.48544354182987 6.83517076654585 6.60402385955935 6.56597263492075 6.91067928237043 6.82369820472407 5.08741077318717 5.45873523738804 6.78954599012816 6.29448472670036 6.94012537826238 6.69136648114859 6.4136692671417 6.7194173206099 6.67390330945265 6.06932601884502 6.39713453339628 6.41614540708875 6.40635894615686 0.200953625070107 0.199508011588349 0.195490463500714 0.196928091836055 0.205016155122020 0.203139561609466 0.198245010662059 0.200930744506916 0.215588950280199 0.193725634875314 0.193725634875314 0.198668300441643 0.205987910410128 0.195075031832295 0.203674931485472 0.193799850687061 0.209391807642892 0.200468927059533 0.197682215377696 3 3|0 +|/ 4004842 4005923 4005537.3 4004519 4006205 + gene protein_coding_gene FALSE TRUE AT3G12600.1|AT3G12600.2 ATNUDT16 (Arabidopsis thaliana Nudix hydrolase homolog 16); hydrolase|ATNUDT16 (Arabidopsis thaliana Nudix hydrolase homolog 16) Identical to Nudix hydrolase 16, mitochondrial precursor (EC 3.6.1.-) (AtNUDT16) (NUDT16) [Arabidopsis Thaliana] (GB:Q9LHK1); similar to ATNUDT12 (Arabidopsis thaliana Nudix hydrolase homolog 12), hydrolase [Arabidopsis thaliana] (TAIR:AT1G12880.1); similar to NUDIX hydrolase [Medicago truncatula] (GB:ABE87403.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.401371412910309 4.37470998555299 0.00210526239015831 1 5.73028692427329 12.8648580469765 0.401371412910309 0.089789290659006
AT1G70200_at 7.85573226182178 8.24895896521473 7.14782698751421 7.05743759466368 7.76294768673554 7.52572572103199 8.22239969980131 7.8374486737896 8.18123064809876 9.00180502961825 8.6172686866452 9.20221084345594 8.15697763787211 8.42496249165337 8.65762926426698 8.66055695153336 8.1840974234909 7.67509092221938 8.75513229971925 0.179090949555494 0.174016550370033 0.180107658106555 0.176989941487248 0.176089195789704 0.171821301173077 0.174460707710732 0.184446117971772 0.195338139930201 0.176401106942456 0.178944626564246 0.176614439130019 0.171821301173077 0.176148459941223 0.178370839231069 0.173950753563226 0.183650964262561 0.185540084824754 0.187291110848938 1 1 - 26436344 26436841 26436625.545 26435960 26438063 - gene protein_coding_gene FALSE TRUE AT1G70200.1 RNA recognition motif (RRM)-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os02g0326200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046705.1); similar to RNA recognition motif (RRM)-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15694.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.433178558753547 -4.37215475927564 0.00211274050486456 1 5.72715089766516 16.2540123338821 -0.433178558753547 0.104874415404488
AT3G52430_at 6.82103332622229 7.39777004811265 7.80061529130106 8.23044492361412 7.23347040499599 6.22189603516012 4.18950624297764 4.12453005735485 5.24136494337093 5.10287528794461 4.43072152389271 4.72007013593781 4.42856699593065 5.33294805352866 4.27045067654551 4.91661942536656 4.61189842747459 4.67792302158312 4.6137978525191 0.293561516362109 0.300867471476380 0.280400623379341 0.295818641759301 0.311943848533061 0.295146475179125 0.271894990580596 0.275593337277752 0.284263329568076 0.270447287602077 0.270629856527506 0.270447287602077 0.272714401454086 0.279883561966103 0.29198934008504 0.270447287602077 0.281624441962019 0.270447287602077 0.272192285847490 3 3 + 19444740 19445170 19444928.636 19442349 19445381 + gene protein_coding_gene FALSE TRUE AT3G52430.1 PAD4 (PHYTOALEXIN DEFICIENT 4); triacylglycerol lipase Encodes a lipase-like gene that is important for salicylic acid signaling and function in resistance (R) gene-mediated and basal plant disease resistance. PAD4 can interact directly with EDS1, another disease resistance signaling protein. Expressed at elevated level in response to green peach aphid (GPA) feeding, and modulates the GPA feeding-induced leaf senescence through a mechanism that doesn't require camalexin synthesis and salicylic acid (SA) signaling. similar to SAG101 (SENESCENCE-ASSOCIATED GENE 101), triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT5G14930.2); similar to phytoalexin-deficient 4-2 protein [Solanum tuberosum] (GB:AAW82884.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.713016916510933 4.37082771756753 0.00211663549344938 1 5.72552176004184 11.3322395297893 0.713016916510933 0.215095416995445
AT1G17200_at 8.67705402599678 9.36068210346931 7.83380904695788 7.97699993550182 9.37154473763932 9.0502108887206 9.39467494439356 9.54235641471357 8.84543573713605 8.98997360808365 8.50722437459967 8.96341981958542 9.33319721056174 8.8019801260955 8.02762548446466 8.66234802769227 8.07702644928101 8.82458351103212 9.08121769699345 0.193969285830476 0.170434254008081 0.184719232009014 0.183210120348840 0.177970849926367 0.173320763909746 0.175825161209113 0.172843874013120 0.180209555337793 0.169994133953145 0.176603991470860 0.173363308565028 0.168745633423810 0.177205044195106 0.19294198894343 0.170341140825443 0.208728022419192 0.170539614190248 0.170165737662800 1 1|0 +|/ 5878577 5879813 5879399.2 5878405 5880034 + gene protein_coding_gene FALSE TRUE AT1G17200.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT3G14380.1); similar to hypothetical protein [Gossypium hirsutum] (GB:CAC84114.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.504042054297698 -4.3673499989716 0.00212687962236826 1 5.72125085839177 17.7118588319167 -0.504042054297698 0.135482708931799
AT1G10910_at 6.67381304908082 6.26675673743987 5.28386960407652 5.21942998916538 7.17001082737062 6.3779862336863 7.36922504998081 7.00538826435615 7.26302322086261 7.43774887832807 6.92613479980933 7.17669159192349 7.02615582100005 7.07887787883204 7.40857747475965 7.30144531230034 7.0016558591547 6.70335492713275 7.58213666457444 0.180506719854919 0.172246955589348 0.181248729805624 0.19837815899443 0.17466950799358 0.180446413182022 0.180626534627012 0.172762827926158 0.176899385179068 0.176771050875641 0.174208500040958 0.178742814299357 0.169615767024009 0.175226378872036 0.173105755552746 0.175958977043495 0.193660220421234 0.179963519541472 0.178923403539904 1 1 + 3643036 3643910 3643506.455 3639878 3644162 + gene protein_coding_gene FALSE TRUE AT1G10910.1 similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2), binding [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to Os01g0559500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043343.1); similar to putative PPR protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87953.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.582873079057018 -4.36448525398221 0.00213535822419011 1 5.71773111070624 13.6735589507458 -0.582873079057018 0.166845470908729
AT3G29240_at 10.5131195003607 10.7404193537549 11.0908515143229 11.2326788750131 10.1853171834192 9.99978666235963 10.5029062103496 10.5908203262930 10.6114136578709 10.5004183917736 9.81476174291265 9.88611696298662 9.75350612195187 9.84278949590057 9.6300151452327 10.1894789863196 9.86480630015917 9.89040407377846 10.6483127333043 0.120093473214920 0.114621389954754 0.128717510003528 0.119366929150691 0.114621389954754 0.119038865474158 0.122325176012178 0.117401067539702 0.118246172546603 0.117024005005686 0.118899116258413 0.119420090704974 0.114621389954754 0.118800847136344 0.123584521165957 0.117713373488404 0.121421545896137 0.121855039251226 0.117498965137557 3 3 + 11193537 11194081 11193790.818 11192728 11194223 + gene protein_coding_gene FALSE TRUE AT3G29240.1|AT3G29240.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33780.1); similar to Os10g0330400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064365.1); similar to Protein of unknown function DUF179 [Medicago truncatula] (GB:ABE94310.1); contains InterPro domain Protein of unknown function DUF179; (InterPro:IPR003774) -0.343693931452618 -4.36380088847455 0.00213738907411305 1 5.71689005304792 20.8298373438865 -0.343693931452618 0.0584122144634056
AT1G26580_at 8.1136260151348 7.86674804623397 8.40753000075415 8.41615087873814 8.80810696059593 8.35402007273169 7.2882779530732 6.8305871687384 7.919985045399 7.9609643002775 7.87498616685604 7.44745066723573 7.7858584513717 7.91482811581663 7.97790332797636 8.31158799966331 8.17725701784634 8.14907781841322 8.10618060451353 0.14028436970179 0.144734425949847 0.150167363315137 0.142169033539136 0.140748599769945 0.139421517317402 0.145359307848199 0.145177763061724 0.138063959782015 0.141796160947582 0.147852062531185 0.146788870674568 0.151996936339941 0.146346753479594 0.146851251635151 0.144533143998165 0.154237913325928 0.141287539181562 0.142971274587412 1 1 + 9186624 9187123 9186868.545 9184593 9187492 + gene protein_coding_gene FALSE TRUE AT1G26580.1 similar to myb family transcription factor / ELM2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G03470.1); similar to Os03g0425800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050406.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAS07212.1) 0.465400447330312 4.36327113216676 0.00213896254931230 1 5.71623894640174 15.9859202265221 0.465400447330312 0.119482785969252
AT1G34760_at 6.57367890578351 6.72484045451146 5.12402892295635 5.6286477082373 6.0979213286372 6.57006138137756 6.1003748360866 6.26987685386985 7.0434754434587 6.7955945045223 6.53192290712541 7.05235145617815 6.76256485107035 6.50160397946423 6.65716872129918 6.65201746498535 5.89939785607015 5.53170995906708 6.70137561525182 0.206760712030611 0.199880541587773 0.208535178518684 0.210126750450588 0.196777345460641 0.200717810031712 0.194552006008917 0.198679163868027 0.203753284738641 0.199424034445384 0.20242680663805 0.196761466914779 0.196403237081418 0.204843909583075 0.202123185894635 0.203655820256982 0.213871027435773 0.215393047993486 0.198996101605213 1 1 - 12744208 12744976 12744585.545 12743799 12745626 - gene protein_coding_gene FALSE TRUE AT1G34760.1|AT1G34760.2 GRF11 (General regulatory factor 11); amino acid binding / protein phosphorylated amino acid binding|GRF11 (General regulatory factor 11) Encodes a 14-3-3 protein. Binds H+-ATPase in response to blue light. Identical to 14-3-3-like protein GF14 omicron (General regulatory factor 11) (GRF11) [Arabidopsis Thaliana] (GB:Q9S9Z8); similar to GRF10 (GENERAL REGULATORY FACTOR 10), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G22300.2); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308)|Identical to 14-3-3-like protein GF14 omicron (General regulatory factor 11) (GRF11) [Arabidopsis Thaliana] (GB:Q9S9Z8); similar to GRF10 (GENERAL REGULATORY FACTOR 10), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G22300.1); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.480125482798766 -4.36028905829393 0.00214784315223362 1 5.71257283852389 12.7838824675084 -0.480125482798766 0.125883095161586
AT1G71980_at 9.41910822214003 9.6513237578029 9.63700593905723 9.7540695735214 10.1735087569082 9.96410011832298 9.3351379932978 9.25275000441584 9.49368088030133 8.97861196964032 9.20255595484168 9.42893592034721 9.50924665610044 9.21821938053341 9.19297163843638 9.38047988506508 9.46387913511417 9.52012402370863 8.95630288148898 0.107487924938854 0.108687360795157 0.113062806430873 0.114427532262782 0.108167354507123 0.112041457648899 0.105052122622126 0.108802741059669 0.122722785185224 0.111441970714977 0.108758877933845 0.104877560576712 0.107932484601794 0.119607982487831 0.109929442543052 0.107220086403039 0.119904529895059 0.108061499965312 0.107085910678082 1 0|1 /|+ 27102992 27103489 27103285.4 27101623 27103801 + gene protein_coding_gene FALSE TRUE AT1G71980.1 protease-associated zinc finger (C3HC4-type RING finger) family protein similar to protease-associated zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22670.1); similar to ReMembR-H2 protein JR702, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94173.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.344638716498241 4.35414164584718 0.00216627555092190 1 5.70501030782146 18.9020839547226 0.344638716498241 0.0595136242202835
AT1G80830_at 8.89444847820098 9.18636972379392 9.84695631033202 9.72990894981616 9.64477948143896 9.34030167977257 9.18755796444016 9.27795028715268 8.05926477970805 8.99575414276322 8.88282140789257 7.39117479465189 8.61491674282844 8.4527478339642 7.50976496809903 8.72075202679622 9.21275127113285 9.34858918646407 7.75554912557038 0.134255343287335 0.123494619045085 0.138822084188319 0.136623694120656 0.128873043193269 0.138440765782234 0.135491974292874 0.129659834760894 0.151962091483368 0.125427171164424 0.129530472435812 0.144900408737168 0.125959810465729 0.129175578087354 0.141994413514836 0.131285309896291 0.129506810270537 0.126163511836991 0.138943478434161 1 1|0 -|/ 30377962 30378651 30378319.444 30377771 30380588 - gene protein_coding_gene FALSE TRUE AT1G80830.1 NRAMP1 (NRAMP metal ion transporter 1); manganese ion transporter/ metal ion transporter Thought to be involved in iron homeostasis. Induced in leaves in response to iron deficiency. Transgenic plants accumulate toxic levels of iron. Gene complements yeast iron uptake mutants. Identical to Metal transporter Nramp1 (AtNramp1) (NRAMP1) [Arabidopsis Thaliana] (GB:Q9SAH8;GB:Q8LCS7;GB:Q9SP94); similar to NRAMP6 (NRAMP metal ion transporter 6), metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G15960.1); similar to NRAMP family metal transporter [Chen (GB:BAE48710.1); similar to Os06g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058349.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) 0.375202710787219 4.35347495391409 0.00216828476551877 1 5.70418973951797 17.7819736735314 0.375202710787219 0.0773528411722674
AT1G28260_at 7.83917223529002 8.30460356005186 8.25187294570517 8.72086691818506 9.21925124721463 8.71295069039803 7.32614244198443 7.37534515050398 7.52212136326725 7.27809020505218 7.23784805705662 7.05610308744752 7.59821981793216 7.37345855597178 5.9487061234218 7.28287131697962 7.40457485730637 7.48140068652312 6.61912985789662 0.226970186308061 0.226402876628735 0.2536741094034 0.225240817126092 0.225059571577444 0.235557361091110 0.238720948841815 0.226582725338407 0.252582679000345 0.229325418217456 0.245791124374099 0.226385713864364 0.225059571577444 0.229949912369938 0.244873481905030 0.230577822423564 0.243748443795521 0.231696276230384 0.236695301654613 1 1 - 9875767 9876336 9876060.091 9875587 9879254 - gene protein_coding_gene FALSE TRUE AT1G28260.1|AT1G28260.2 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19400.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32367.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.524018470421337 4.35243023702813 0.00217143727018003 1 5.70290373630159 15.3751147927843 0.524018470421337 0.144305471023789
AT4G32960_at 6.04504063800139 6.32328771174113 5.8719037628822 5.85959004468397 6.55622236501663 6.37685142238404 5.54456855716795 5.43682745407424 5.55442311600932 5.39257928608682 5.65734297119984 5.66496907463921 5.83451483232432 5.98928685614428 5.71615077898059 5.8360271964114 6.14135292256813 5.51086289792932 5.34736481495233 0.179234546380832 0.181963462925062 0.191893734525732 0.191429086503538 0.181443773771950 0.202834835975239 0.181958184162018 0.189405638821389 0.182268833545458 0.178164581265976 0.193478793110989 0.181178980262965 0.187317896529835 0.190982250053777 0.187570134837746 0.184798467969782 0.199586965225186 0.183205566153923 0.198101065903014 4 4 - 15908818 15909918 15909130.818 15908621 15910183 - gene protein_coding_gene FALSE TRUE AT4G32960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32970.1); similar to PREDICTED: similar to MGC84305 protein [Strongylocentrotus purpuratus] (GB:XP_793273.1); similar to Os06g0150100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056821.1) 0.345534255377007 4.35019498897692 0.00217819885760680 1 5.70015158413935 11.6144210846393 0.345534255377007 0.0602854350685556
AT3G18380_at 6.01367600701359 6.2125553033937 5.75816260995473 5.53252122852477 5.70845084229181 5.4777319470305 5.68151427012399 6.03618252094136 5.56998860048205 5.32162816232731 4.90304461398302 4.87023331130814 5.22785495748725 5.30371213856861 5.06860547237205 5.12237998384624 5.16976136161619 4.77221175362797 5.5664035300169 0.216912331923411 0.211247731947641 0.213106460508811 0.219685825710811 0.207524547617876 0.211882096667909 0.214687620791409 0.209313183155061 0.205314118928944 0.207970051011118 0.207429403383311 0.211966976383761 0.212490859427543 0.214818902421961 0.205314118928944 0.210162562146204 0.206306109180357 0.20933295017395 0.207066195645125 3 3 - 6311035 6311867 6311342.182 6310742 6313325 - gene protein_coding_gene FALSE TRUE AT3G18380.1|AT3G18380.2 DNA binding / sequence-specific DNA binding / transcription factor|sequence-specific DNA binding / transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15215.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37623.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15215.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37623.1); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.39902334179597 -4.34807440000859 0.00218463454379136 1 5.69753978180201 11.0729654478476 -0.39902334179597 0.0898365054263697
AT3G63310_at 8.16573611579779 8.53497547241894 8.94086649386612 8.739665718842 8.97513722996617 9.09862347150628 7.35281160916742 7.9798052847532 8.31209845920151 7.83936515883064 8.32550561662053 7.99131904919463 8.32879933954287 8.06105256869618 7.7555561108118 8.25728447363766 7.59866171323713 8.54370944257546 7.9976822665084 0.150603182093595 0.147114003971451 0.142077060108993 0.148830605438029 0.141992059910823 0.154854155053989 0.149681458056684 0.148470751684841 0.152025083369428 0.147666727225782 0.146583321342800 0.138561158135221 0.140344865125109 0.151814538936393 0.149792762552147 0.139386382987843 0.156720100515955 0.146946623796878 0.141068680400544 3 3|0 -|/ 23398921 23399669 23399231.6 23398831 23399960 - gene protein_coding_gene FALSE TRUE AT3G63310.1 glutamate binding similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT1G03070.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.494130926226741 4.34647999382425 0.00218948681045003 1 5.69557551876063 16.5521783416079 0.494130926226741 0.132382788342648
AT3G46010_at 11.1512820405932 11.259559749685 11.5745486723753 11.5384493748687 11.7047996084078 11.5002552675862 11.4791183521841 11.5556996112890 11.3566294381767 11.1827093770477 11.8251065536619 11.6323230841893 11.7765747436421 11.7447808134571 11.4468688576307 11.6600670190168 11.6047712604295 11.7679808475584 11.2384506359649 0.0790301627283977 0.0769970054384525 0.0804280152040142 0.0774745535163328 0.0781512015761225 0.081361266021083 0.0794164981261252 0.0774799785354895 0.0887526691751304 0.0814734484931207 0.0814935668589287 0.0790876957004621 0.0784568051919212 0.0772379007977046 0.0795236920799573 0.0785977312460738 0.079266319423923 0.0822586801067263 0.0810685709028756 3 3|0 -|/ 16920664 16921159 16920925.6 16920348 16921805 - gene protein_coding_gene FALSE TRUE AT3G46010.1|AT3G46010.2 ADF1 (ACTIN DEPOLYMERIZING FACTOR 1) Actin-depolymerizing factor (ADF) and cofilin define a family of actin-binding proteins essential for the rapid turnover of filamentous actin in vivo. Identical to Actin-depolymerizing factor 1 (ADF-1) (AtADF1) (ADF1) [Arabidopsis Thaliana] (GB:Q39250); similar to ADF4 (ACTIN DEPOLYMERIZING FACTOR 4), actin binding [Arabidopsis thaliana] (TAIR:AT5G59890.1); similar to Actin-depolymerizing factor 1 (ADF 1) (GB:Q9FVI2); contains InterPro domain Actin-binding, cofilin/tropomyosin type; (InterPro:IPR002108) 0.320572144711731 4.34460210928808 0.00219521666143643 1 5.69326143675721 22.941250233546 0.320572144711731 0.0426467573079327
AT2G02500_at 6.52133896618197 6.57588678618954 6.2520791603285 6.11498922686847 6.69877388129712 6.47158002823981 7.36188021865606 6.95033903726095 5.95690758808139 6.50930966414186 7.32601238184164 7.87355314153014 7.04542433098706 7.32317295528427 8.35549970002649 7.66379424555412 7.14622809887742 7.35418518467574 6.32609665628957 0.166783962206474 0.157991253045034 0.163100447356 0.159263789618471 0.165191276068623 0.163451806199121 0.166718080211881 0.164740976091267 0.175072992111778 0.166265187078363 0.163886359306683 0.162229721016072 0.163839775670254 0.160871437254541 0.169456302698808 0.16367534564964 0.175352404123412 0.159225878258935 0.16662370872489 2 0|2 /|- 671079 672017 671636.875 670877 673154 - gene protein_coding_gene FALSE TRUE AT2G02500.1 ISPD (2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE) Encodes a protein with 4-Diphosphocytidyl-2C-methyl-D-erythritol synthase activity. The enzyme has an absolute requirement for divalent cations (Mg2+ reaches the highest catalytic activity). Identical to 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor (EC 2.7.7.60) (4-diphosphocytidyl-2C-methyl-D-erythritol synthase) (MEP cytidylyltransferase) (MCT) (AtMEPCT) (AtMECT) (ISPD) [Arabidopsis Thaliana] (GB:P69834;GB:O64726;GB:Q9LL91); similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol synthase [Stevia rebaudiana] (GB:ABB88837.2); contains InterPro domain 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; (InterPro:IPR001228) 0.389436720393759 4.34306891331526 0.00219990674999421 1 5.69137164154262 13.5059026086368 0.389436720393759 0.085263859940802
AT2G02390_at 9.37408170747484 9.32165105203791 10.1542170321289 10.1045588303652 9.20481939034189 8.74359328780847 8.3431458904347 8.15174938735265 8.11802976656688 7.58297228014491 7.37961701756126 7.31355648348024 7.88798028345438 8.15745702266356 7.21715758489776 7.8091062527977 7.99298827587403 8.19378147419484 7.4332343670698 0.188941116526854 0.188711702194628 0.186020057407355 0.194149908322797 0.185783933787065 0.198776121090923 0.187519602122690 0.188253054773196 0.19757872975565 0.193852966802358 0.185134103375569 0.183377249484976 0.188806543581789 0.183377249484976 0.190137124736690 0.188610586075259 0.188859761925411 0.183377249484976 0.189756505098301 2 0|2 /|+ 629557 630920 630182.625 628908 631113 + gene protein_coding_gene FALSE TRUE AT2G02390.1|AT2G02390.2|AT2G02390.3 ATGSTZ1 (GLUTATHIONE S-TRANSFERASE 18); glutathione transferase Encodes glutathione transferase belonging to the zeta class of GSTs. Naming convention according to Wagner et al. (2002). The protein undergoes spontaneous thiolation following treatment with the oxidant tert-butylhydroperoxide. Identical to Glutathione S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1) (Maleylacetone isomerase) (EC 5.2.1.-) (MAI) (GST18) [Arabidopsis Thaliana] (GB:Q9ZVQ3); similar to ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02380.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60042.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046)|Identical to Glutathione S-transferase zeta-class 1 (EC 2.5.1.18) (AtGSTZ1) (Maleylacetone isomerase) (EC 5.2.1.-) (MAI) (GST18) [Arabidopsis Thaliana] (GB:Q9ZVQ3); similar to ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02380.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60042.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987)|similar to ATGSTZ2 (Arabidopsis thaliana Glutathione S-transferase (class zeta) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G02380.1); similar to glutathione S-transferase zeta [Brassica napus] (GB:AAO60042.1); contains InterPro domain Maleylacetoacetate isomerase; (InterPro:IPR005955); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.393341768637185 4.34132581702966 0.00220525202554621 1 5.68922261692659 16.9024109158894 0.393341768637185 0.0873158191230387
AT3G23080_at 9.88114219867559 9.96236139642965 9.33726630558636 9.4296545219747 10.2391558710847 9.9585997570245 10.3572421232924 10.2757219862902 10.8024647793097 10.6833553008123 10.7932404762299 10.5500839448675 10.2916728779522 10.4677030042257 10.4765987540927 10.2661443816331 9.9821496923103 10.4082736371493 10.6096817291279 0.0945875714331853 0.0928030806643343 0.0930438629778223 0.0932901101315093 0.0946142872272065 0.0964798249189175 0.0965511043513068 0.093956831050329 0.0951864917835956 0.0910679835450894 0.0887812016517193 0.0904057355728098 0.0921685318923306 0.0927154988681775 0.0936542162701526 0.089973978854114 0.093494450384424 0.0899748289160947 0.093887956843513 3 0|3 /|- 8207621 8208066 8207824.2 8207294 8209336 - gene protein_coding_gene FALSE TRUE AT3G23080.1|AT3G23080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14500.1); similar to putative membrane related protein CP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83004.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14500.1); similar to putative membrane related protein CP5 [Oryza sativa (japonica cultivar-group)] (GB:BAC83004.1); similar to Os07g0185200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059064.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.33598253464004 -4.33337560498414 0.00222980944883204 1 5.67941410720752 20.4816349946152 -0.33598253464004 0.0548584393806934
AT1G26440_at 6.79627808831713 6.70287418044525 7.3008797684631 7.34135907862308 8.0557790109036 7.03636151454095 5.55894991214594 4.91395813867653 6.41121894393607 5.99381345908315 6.33097077678277 5.96009338779543 6.46517571872085 6.65624105171607 5.09896409623933 6.60298063504071 5.90532573495121 6.42098685637295 6.3069451653439 0.207970907584071 0.200195308803472 0.21792025157488 0.212852067469515 0.209267103902002 0.216660186098380 0.200195308803472 0.203869622495985 0.221602218592515 0.202056026517577 0.200195308803472 0.21063002946833 0.20248252723579 0.212216634698902 0.208926636788346 0.207433295511616 0.250951341286423 0.202855103035986 0.208150854750797 1 1|0 -|/ 9144126 9144837 9144519.9 9143954 9146037 - gene protein_coding_gene FALSE TRUE AT1G26440.1|AT1G26440.2|AT1G26440.3|AT1G26440.4 ATUPS5 (ARABIDOPSIS THALIANA UREIDE PERMEASE 5) Identical to Ureide permease 5 (AtUPS5) (UPS5) [Arabidopsis Thaliana] (GB:Q93Z75;GB:Q8LBT6;GB:Q9FZC9); similar to UPS2 (UREIDE PERMEASE 2) [Arabidopsis thaliana] (TAIR:AT2G03530.2); similar to allantoin permease [Phaseolus vulgaris] (GB:AAS19930.1); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834)|similar to ATUPS4 (Arabidopsis thaliana ureide permease 4) [Arabidopsis thaliana] (TAIR:AT2G03520.1); similar to allantoin permease [Phaseolus vulgaris] (GB:AAS19930.1); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834) 0.691673094658923 4.33305878595202 0.00223079414573708 1 5.67902300087087 12.9220140306762 0.691673094658923 0.209502615147127
AT2G22430_at 10.3144346818345 10.2407991297650 10.8849506070607 10.8851421711118 11.4847735892460 10.9034088542844 10.8715630592219 10.4006083191242 10.7795562133953 10.4590892461686 11.2103220422479 10.8087253975540 11.0927025512463 11.0879075119947 10.5689494898177 10.8474358283640 10.8982128714278 11.1275371950762 10.4532169002492 0.0992547861444621 0.0976415539637726 0.0987346609040457 0.0994447837917402 0.0980436480917814 0.111783303074763 0.0987813285157082 0.0970439952971868 0.101484455830174 0.0966126382137644 0.0962196221989736 0.0944840068003333 0.096660064974367 0.100442278146460 0.101558589749453 0.0944587624626724 0.104263784757827 0.102823568781416 0.0964100948363274 2 2 - 9533589 9534212 9533854.818 9533175 9534910 - gene protein_coding_gene FALSE TRUE AT2G22430.1 ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-6 (Homeodomain transcription factor ATHB-6) (HD-ZIP protein ATHB-6) (ATHB-6) [Arabidopsis Thaliana] (GB:P46668;GB:Q9SJZ1;GB:Q9SQ78); similar to ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 13), transcription factor [Arabidopsis thaliana] (TAIR:AT4G40060.1); similar to homeodomain-leucine zipper protein [Brassica napus] (GB:AAR04932.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.486993749483846 4.33172864439705 0.00223493342998901 1 5.67738077432034 21.5077991669079 0.486993749483846 0.130102762521939
AT3G12760_at 9.9291847832431 9.95686654747135 10.3413875814613 10.2762664064087 10.5309621109942 10.3610686838658 9.84651612493167 9.62767997289455 9.65527555497425 9.55001257745316 9.8473120332302 9.53472074926452 9.67665145599053 9.81686145518757 9.57930807349549 9.86093980420324 9.81183835700589 9.67635202557154 9.6141112550735 0.0673943939419557 0.067362884286085 0.068990279365241 0.0683231483325554 0.070970913862063 0.0693392003057887 0.0690510819735044 0.0693872955677376 0.0761997162889766 0.0736452774996987 0.0693201601201841 0.067362884286085 0.074645063990855 0.0697096812255285 0.0692827915558658 0.067362884286085 0.0731838419363785 0.0688611330390518 0.0715211561797389 3 3|0 +|/ 4055621 4056766 4056329.333 4054746 4056987 + gene protein_coding_gene FALSE TRUE AT3G12760.1 similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G15860.1); similar to SM10 [Nicotiana tabacum] (GB:ABI49160.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Protein of unknown function DUF298; (InterPro:IPR005176); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.328195435145337 4.33024131563875 0.00223957165088082 1 5.67554410714809 19.7747237547808 0.328195435145337 0.0494827669814202
AT1G64680_at 9.52599789609139 9.54995366876217 9.53457893588876 9.3477025738807 9.85137850812736 9.574185108205 10.7297668986240 10.7598917318062 10.6963899594161 10.7213003998572 10.4145745487035 10.3734727545693 10.5930286580183 10.6650504971808 10.3904143494779 10.7576327597146 10.5137138163588 10.5489503975553 10.5295290014225 0.0795466736274798 0.0765780432557595 0.083840190209853 0.0797725959895536 0.0769081829151545 0.0861074625061919 0.0773088588220235 0.0773588672514927 0.0783595244699643 0.0749017166431475 0.0767416295168547 0.0745873946162791 0.0745873946162791 0.0746319178538031 0.0793626746426902 0.0745873946162791 0.0809943042685658 0.0745873946162791 0.0752512239137891 1 1|0 +|/ 24040002 24040696 24040250.5 24039684 24041064 + gene protein_coding_gene FALSE TRUE AT1G64680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03055.1); similar to hypothetical protein LOC_Os11g37650 [Oryza sativa (japonica cultivar-group)] (GB:ABA94460.1); similar to Os08g0114100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060847.1) -0.340704832415036 -4.32928616211071 0.0022425557460076 1 5.67436440280177 20.4497708366378 -0.340704832415036 0.0582349746570179
AT1G74210_at 9.05536585657575 9.11377082555464 8.96946932141892 8.9712516067473 8.65193915774448 8.49909236766779 8.66463067676791 8.48868204269333 7.993147425431 8.12417769500684 6.97801248331496 6.96042223729392 7.55953186858612 7.54640326643692 6.60741475013467 7.57495249873593 7.59877075595867 7.4318704491519 7.46494332931209 0.182881748485627 0.178736032356069 0.179032797474646 0.178736032356069 0.178736032356069 0.185684760381778 0.179143864340752 0.178905931853231 0.186059527997848 0.183216884956921 0.191015558851797 0.195735307115452 0.19017888059994 0.185994753268554 0.191637326022461 0.178736032356069 0.190068325313200 0.186550244562684 0.193809482184336 1 1|0 +|/ 27915757 27916419 27916107 27913975 27916602 + gene protein_coding_gene FALSE TRUE AT1G74210.1 glycerophosphoryl diester phosphodiesterase family protein similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G08030.1); similar to glycerophosphodiester phosphodiesterase-like protein [Manihot esculenta] (GB:AAV74406.1); similar to Os01g0763600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044335.1); similar to Os03g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050628.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) -0.318129049109144 -4.32851043128271 0.00224498243438593 1 5.67340618276135 16.3732394512054 -0.318129049109144 0.0415815391898544
AT3G28930_at 7.2884906265496 7.33280952749983 7.39822923519609 7.56380463353182 7.3113630123102 6.62868903523656 6.23441982070554 5.88282760008437 7.18028272796755 6.72985583232235 7.05893701098281 7.8397137181656 6.84872373456016 7.5616186118874 7.23657125575064 6.98306668720491 6.63206473684576 7.3182005478264 6.26054479108553 0.19025709598275 0.190825536841675 0.188374187382023 0.193131855222452 0.187407813117223 0.208905155011898 0.194668108761992 0.192659440212763 0.195100663429848 0.191026542107206 0.183455301652979 0.185150462440095 0.188604762053192 0.193094321497602 0.189769074798704 0.183455301652979 0.19240312951877 0.190420141118378 0.198924677836236 3 3|0 -|/ 10961139 10961890 10961557.1 10960937 10962045 - gene protein_coding_gene FALSE TRUE AT3G28930.1 AIG2 (AVRRPT2-INDUCED GENE 2) avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2 Identical to Protein AIG2 (Avirulence-induced gene 2 protein) (AIG2) [Arabidopsis Thaliana] (GB:P54121); similar to avirulence-responsive protein, putative / avirulence induced gene (AIG) protein, putative [Arabidopsis thaliana] (TAIR:AT3G28940.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to Os02g0141000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045856.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 0.501092753068324 4.32762979988361 0.00224774070203601 1 5.67231825458748 13.9092907639033 0.501092753068324 0.136157868315673
AT3G61010_at 5.4563733247854 5.46293441938554 5.64797904086357 5.44545459361384 6.00828349223471 5.16451958516307 4.54417930572028 4.5042068285067 5.27016233168687 4.94716970798155 5.79573116097797 5.68861063161529 5.98356003595279 5.87765554400923 5.29733470952334 6.53539002600727 5.45408775904135 5.24669310901558 5.49524367248353 0.215953027262181 0.213905368507579 0.22605587456323 0.224868144034464 0.215463884512388 0.235827757246569 0.217972721890414 0.215737870630556 0.225556586221388 0.217963467613297 0.21660292425784 0.21393508134071 0.220189756743163 0.222856221276342 0.220318901798484 0.218333831117292 0.223958566163955 0.216805449893802 0.238225944952084 3 3|0 -|/ 22583088 22585615 22584075.692 22582467 22586230 - gene protein_coding_gene FALSE TRUE AT3G61010.1 glycosyl hydrolase family protein 85 similar to glycosyl hydrolase family 85 protein [Arabidopsis thaliana] (TAIR:AT3G11040.1); similar to ferritin [Avicennia marina] (GB:AAZ04239.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Glycoside hydrolase, family 85; (InterPro:IPR005201); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) 0.535996671501593 4.32756130961013 0.00224795537637596 1 5.67223363621477 10.7654453784851 0.535996671501593 0.150328088149934
AT1G69720_at 5.35550572781855 6.13055047872648 5.82539953910991 5.94465686241585 5.03576356101343 4.32700595174011 4.8392504211408 4.84735889151123 5.87486573917526 4.48168665843295 3.24586645735628 3.52912481300131 4.17328387191591 4.35659999992968 3.49387742766714 4.25462588970071 4.34330206546604 3.74448745481857 5.00918071322847 0.253011804928488 0.246517298361862 0.243294150469752 0.243609808359376 0.237882317303367 0.236199947244389 0.236447735198896 0.235926011489789 0.245066593941833 0.238188873633135 0.235926011489789 0.24472491767888 0.235926011489789 0.242502676152003 0.240460857379117 0.235926011489789 0.237511490226727 0.237005507353709 0.240449657646939 1 1|0 +|/ 26231143 26232046 26231431.9 26230529 26232243 + gene protein_coding_gene FALSE TRUE AT1G69720.1 HO3 (HEME OXYGENASE 3); heme oxygenase (decyclizing) Encodes a member (HO3) of the heme oxygenase family. similar to HY1 (HEME OXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT2G26670.1); similar to putative heme oxygenase 1 precursor [Pisum sativum] (GB:AAK82969.1); contains InterPro domain Haem oxygenase; (InterPro:IPR002051) -0.619612470346526 -4.32611693438431 0.00225248773185533 1 5.67044894473362 9.7954649463983 -0.619612470346526 0.182924572963617
AT1G57600_at 5.84670370836291 5.96872741785836 6.03563828802115 6.07659963115276 6.43222327000504 5.97432681111161 6.07500018024635 5.7554810650139 4.85377305596072 5.52138265518536 5.52378596131435 5.79952257238166 5.74973633748802 5.76857429291554 5.6897376959491 5.59768036405206 5.95487296265453 5.84504175036803 5.00703684470199 0.229699537104189 0.221688247473086 0.238656613722232 0.232756057275694 0.226391797641580 0.227744875342036 0.221688247473086 0.233164395055326 0.238223850952551 0.231603783189707 0.221688247473086 0.228707979812555 0.223057526745529 0.238310925951456 0.228553917569490 0.225688192196732 0.227852590018386 0.22846202900134 0.225755570086032 1 1|0 -|/ 21334395 21335997 21335003.667 21334177 21338392 - gene protein_coding_gene FALSE TRUE AT1G57600.1 membrane bound O-acyl transferase (MBOAT) family protein similar to Os05g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054621.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90199.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) 0.415970190363325 4.3224911420733 0.0022639085833764 1 5.6659672252578 11.4548458018497 0.415970190363325 0.0991603600212774
AT1G78150_at 8.29073657279275 8.11498340045366 8.04245765254195 8.10319936104367 8.27747023478877 8.49894390254931 7.06293856833181 7.42057332468578 7.79773501592787 7.53369638396964 8.17083759470665 8.28191487342944 7.99490548778576 8.15046526254388 8.11219537991713 8.3037529190471 7.53864132819759 7.50519150919966 7.95488828259571 0.157301280278472 0.151466862899636 0.150732208293287 0.158232891067364 0.150659794532555 0.159146963909086 0.149822355975179 0.159085541201496 0.162437081709925 0.161765700219095 0.153843452829648 0.15419318301643 0.174316473916975 0.157242742976189 0.172358900240194 0.149822355975179 0.158905828894924 0.155977321398584 0.159062332579501 1 1 + 29410519 29411173 29410777.222 29409541 29411645 + gene protein_coding_gene FALSE TRUE AT1G78150.1|AT1G78150.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G35780.1); similar to TPA: TPA_inf: HN1-like protein isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:DAA01822.1); similar to Os07g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060324.1); similar to Os02g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047207.1) 0.376670652343626 4.32207962979826 0.00226520873154585 1 5.6654584209416 15.8610851797407 0.376670652343626 0.0795923415140111
AT4G19185_at 5.68913709432417 5.67394977099059 5.45541230334207 5.68015275867032 6.2867245262416 5.66655543689395 5.0176207236293 4.82506451379378 4.33181636737992 4.60427515910089 4.71436430890884 4.7101996668118 5.08935665342951 4.94690416426629 4.56726229497318 4.7119018356867 4.53291551829778 4.4317954074531 3.85773228060384 0.214964031435435 0.212300248611069 0.214645009744417 0.209288729238456 0.216443009815358 0.218672874966478 0.206779833150013 0.213001133448225 0.215949077761047 0.215651178082767 0.206883184052497 0.209813155005045 0.216977634386339 0.213005344944566 0.22305630725801 0.20883249310888 0.219292819758330 0.217677503050061 0.21617614446515 4 0|4 /|- 10489223 10489914 10489512.333 10489053 10491682 - gene protein_coding_gene FALSE TRUE AT4G19185.1 integral membrane family protein similar to nodulin-related / integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G45370.2); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE84659.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.459623888068021 4.32069987073701 0.00226957385892192 1 5.66375223154547 10.0256748494474 0.459623888068021 0.118946164559663
AT2G33480_at 7.85930751226748 7.95448743547817 7.95490066116579 7.71008203444637 8.195352513424 7.32244314450169 8.60767668640068 8.11971392546922 8.03709782746076 8.59456466797817 7.9367637375456 7.92507311937993 6.88770695970965 7.23822490629185 7.14734758083091 8.37871354045398 7.71145541296315 6.91194437499547 8.55087394265972 0.204909461835943 0.205233831131189 0.197800091643252 0.198881851150465 0.201086465078541 0.203907984591116 0.202043182372488 0.213124577747166 0.215776703183986 0.199165885854708 0.205506684249303 0.198742496933366 0.208527753562216 0.212451008378868 0.203285432232473 0.197800091643252 0.222446173412061 0.218386937418538 0.203137426503362 2 2 + 14188706 14189274 14189022.818 14188262 14189478 + gene protein_coding_gene FALSE TRUE AT2G33480.1 ANAC041 (Arabidopsis NAC domain containing protein 41); transcription factor similar to ANAC083 (Arabidopsis NAC domain containing protein 83), transcription factor [Arabidopsis thaliana] (TAIR:AT5G13180.1); similar to unknown [Solanum lycopersicum] (GB:CAA99760.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.608313455098829 -4.3203037485866 0.00227082873629234 1 5.66326233022442 15.9211617475046 -0.608313455098829 0.178931643591312
AT4G04350_at 7.70217016507045 7.82091208690684 7.22847453806558 7.0764885680109 7.64780519679673 7.49113156930175 7.80399506561941 7.76212240473308 7.24497425312204 7.6407321359163 7.32083002323293 7.54202866146802 7.04617318413673 7.14723978614647 7.71834727696135 7.84112490804108 7.44654011836046 7.1120288566144 7.98980692904037 0.20564808554679 0.186438035001302 0.190159941963755 0.189710894864752 0.188382706663992 0.188671980688142 0.187028833995925 0.194580153522472 0.19797474710638 0.182081955583250 0.189764903544445 0.179151881892697 0.194112860668903 0.197286991467812 0.199853367222951 0.184233691212342 0.194529919423369 0.183550909058016 0.179151881892697 4 4 + 2132189 2132975 2132611.545 2128088 2133127 + gene protein_coding_gene FALSE TRUE AT4G04350.1 EMB2369 (EMBRYO DEFECTIVE 2369); ATP binding / aminoacyl-tRNA ligase similar to OVA2 (OVULE ABORTION 2), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G49030.2); similar to Isoleucyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL53315.1); similar to leucyl-tRNA synthetase [Treponema denticola ATCC 35405] (GB:NP_972938.1); similar to leucyl-tRNA synthetase [Salinibacter ruber DSM 13855] (GB:YP_445066.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain ValRS-IleRS-LeuRS editing; (InterPro:IPR009008); contains InterPro domain Leucyl-tRNA synthetase bacterial/mitochondrial, class Ia; (InterPro:IPR002302) -0.31985348334738 -4.31922539769347 0.00227424863081621 1 5.66192854576014 15.0776175532613 -0.31985348334738 0.0436081698175007
AT4G38940_at 5.69339449551448 5.72018472892338 6.1998885710863 6.0006341107042 6.74400598357222 6.05350736903038 5.44770906713163 5.51925451179817 5.83328536242599 5.62188460805046 6.28640531678933 5.9633873042846 6.14411524656642 6.03265191647171 5.97915306802869 6.04274229092624 5.95058151290141 6.09882593577514 5.85372827923204 0.200191910348152 0.192696742646844 0.204110079890495 0.199070353963399 0.213072896290303 0.204079588855029 0.193424489286215 0.199007691826867 0.205225000688237 0.19915562561789 0.192696742646844 0.193607682462487 0.192696742646844 0.192696742646844 0.192696742646844 0.197325939953427 0.192857270912459 0.200382936208462 0.197999695971653 4 4 + 18153386 18153930 18153604.818 18152681 18154108 + gene protein_coding_gene FALSE TRUE AT4G38940.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G10510.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.473486690910736 4.31732485337201 0.00228028952714619 1 5.65957730769833 11.8382551416555 0.473486690910736 0.125070419280514
AT2G02070_at 7.72617491821075 8.0653072966932 7.16448806499014 7.32353743592331 8.07771614194263 7.80291527650261 7.37194597484273 7.05868102254045 6.91225537094872 6.86611229680241 7.9719850964482 8.05144399531667 7.80238654563212 8.10830449943301 7.61226028594957 7.50795786891744 7.13047939684686 7.16143037554274 6.87158733470569 0.171365213855504 0.168586715499436 0.168854315065844 0.176301937722744 0.172190318570629 0.168036233409021 0.169073857361461 0.170621671837938 0.178289129898232 0.169332793441267 0.169277515032339 0.167812342419745 0.167246935743692 0.1648402600141 0.171556290832387 0.164778443408242 0.178251595380010 0.167107562780896 0.173978372356201 2 2 + 508579 509129 508851.727 505486 509424 + gene protein_coding_gene FALSE TRUE AT2G02070.1 ATIDD5 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 5); nucleic acid binding / transcription factor/ zinc ion binding similar to ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4), transcription factor [Arabidopsis thaliana] (TAIR:AT2G02080.1); similar to INDETERMINATE-related protein 9 [Zea mays] (GB:AAV51392.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.410799800313218 4.31680149754282 0.00228195604594876 1 5.65892973078577 14.8496454375373 0.410799800313218 0.0969658990603682
ATCG00210_at 9.83501876567306 10.4746062895811 10.4959595796177 10.8283874632476 9.97514681127548 9.7924285360099 10.4327626689223 10.4548251491844 11.4759709909220 11.7395975738240 10.4985063766855 11.0566056665665 10.4536090965614 10.5437639716899 10.2916169023218 10.8917069479781 10.3640928712121 11.8305885462765 11.8208186557389 0.0826859309463944 0.0798377651075417 0.081195683875795 0.0855974213572005 0.0747879686332217 0.0836457691281898 0.0764854184765912 0.0781085697152015 0.0793529182043206 0.0750775768378835 0.074711688039068 0.0750770700547456 0.0751583480574368 0.0758734900184032 0.0771712035883007 0.074711688039068 0.0796567935565983 0.074711688039068 0.074711688039068 C C + 28091 28152 28116.818 28089 28178 + gene protein_coding_gene FALSE TRUE ATCG00210.1 Identical to Cytochrome b6-f complex subunit 8 (Cytochrome b6-f complex subunit VIII) (Cytochrome b6-f complex subunit petN) (petN) [Arabidopsis Thaliana] (GB:P61039;GB:P12178;GB:P56789); similar to PetN [Acorus calamus] (GB:YP_319758.1); similar to petN [Nymphaea alba] (GB:YP_053148.1); contains InterPro domain PetN; (InterPro:IPR005497) -0.481903531776367 -4.31515978939309 0.00228719222930848 1 5.65689803896706 21.4961954267255 -0.481903531776367 0.128743042152252
AT3G15110_at 7.05057747724211 6.9913056182724 6.62207113879663 6.38147278558084 7.42830052416523 7.16726690258911 6.67355246736618 6.81823596665792 6.76762967356673 6.6738032929147 7.37285872729156 7.48037716490155 7.15957421084749 7.43377214953016 7.45436723129369 7.56269651976534 7.37280940650707 7.14624075537619 6.60335002180434 0.155492845176597 0.155935976157464 0.166712153790781 0.168712284092975 0.158940642435217 0.168874727671689 0.166636366976465 0.162628462456162 0.162707527208358 0.161781377520673 0.155321111845874 0.158095850457183 0.155321111845874 0.168050188142847 0.166931975943607 0.157294545042563 0.163445270518433 0.170711625622354 0.159043247610437 3 3 - 5084462 5085598 5085084.455 5084285 5085850 - gene protein_coding_gene FALSE TRUE AT3G15110.1 similar to Os02g0307800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046643.1) 0.35380132332942 4.3145412270638 0.00228916846617378 1 5.65613241435497 13.9188135351427 0.35380132332942 0.067129282045638
AT1G73470_at 9.24477578494624 9.02275394928379 9.50018718123195 9.2780196875227 10.0079321769072 9.61938589194896 9.40637552774402 9.17083256790857 9.49842730676732 9.54896154516359 10.0170849509404 9.7212971033202 9.89949639202204 10.1243301559610 9.94499014639779 9.98254223897423 9.96719713453496 9.83502250762605 9.48658091964535 0.104054829772993 0.105492538990512 0.103429736249744 0.105696586173867 0.103207955404234 0.109153421032726 0.104584299183741 0.10568138487577 0.114961293208139 0.104392957465349 0.104977853930825 0.102171759800460 0.102982706835922 0.105909692275103 0.101067205096552 0.107256935890326 0.102867614795881 0.107571620046817 0.101508946641395 1 1|0 +|/ 27629921 27631231 27630499.889 27628810 27631362 + gene protein_coding_gene FALSE TRUE AT1G73470.1|AT1G73470.2 similar to hypothetical protein slr0975 [Synechocystis sp. PCC 6803] (GB:NP_440211.1); similar to Os09g0448900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063318.1) 0.407684299231027 4.31425834780326 0.00229007284517417 1 5.6557822582895 19.1301920138938 0.407684299231027 0.095588352331149
AT1G14345_at 8.9665735394383 9.31833128332484 8.547144945738 8.91424316390332 8.81791762472353 9.08527028246142 10.0445442417649 10.6149015642080 10.5732117067982 10.3904814769164 10.6361535605820 10.5082547041315 10.3881587385161 10.4092886353638 10.0796517083349 10.4092889455463 9.8065198646651 10.0378773558524 10.2583920529386 0.125870203610386 0.116443128422297 0.139261292459711 0.130172094290343 0.123489777866585 0.124807258261209 0.120465117058980 0.120875937750213 0.119208922617228 0.119108892743466 0.126851705288621 0.120938393560219 0.119180943555653 0.123467652534786 0.123160142908782 0.122568917167624 0.125796808239297 0.118674580146307 0.117738519527658 1 1 + 4899304 4899707 4899482.909 4899140 4899974 + gene protein_coding_gene FALSE TRUE AT1G14345.1 similar to hypothetical protein 9 [Ipomoea batatas] (GB:AAV88073.1); contains domain ALDO/KETO REDUCTASE (PTHR11732); contains domain ALDO/KETO REDUCTASE RELATED/NUCLEIC ACID BINDING (PTHR11732:SF1) -0.508953104702269 -4.31316371907922 0.00229357604816515 1 5.65442716136001 19.6344962980328 -0.508953104702269 0.140086604600900
AT3G17330_at 6.12687111020083 6.14266356649151 5.83305302746058 6.11629702946098 5.75113088955383 5.87597832011198 6.94224234203408 6.86978734272378 6.16544903107039 6.71977974719025 6.54837295554 6.8498072120068 6.8378687750547 6.56241374011637 5.99706960914494 6.50419330956897 6.82422428301771 6.00640587573993 6.79276356101516 0.199752511334676 0.203377854460421 0.215238506852021 0.203646259621397 0.208067371811941 0.20635253867892 0.197044931461101 0.197044931461101 0.205261304021051 0.197044931461101 0.200709739675999 0.197516416554934 0.202382675441861 0.200729553469024 0.209229231576327 0.202134479344572 0.197044931461101 0.205818946087322 0.197277028806688 3 3 - 5917301 5917741 5917520.909 5916946 5920194 - gene protein_coding_gene FALSE TRUE AT3G17330.1|AT3G17330.2 ECT6 (evolutionarily conserved C-terminal region 6) similar to ECT7 (evolutionarily conserved C-terminal region 7) [Arabidopsis thaliana] (TAIR:AT1G48110.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE91083.1); similar to Os03g0317000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049941.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275)|similar to ECT7 (evolutionarily conserved C-terminal region 7) [Arabidopsis thaliana] (TAIR:AT1G48110.1); similar to putative RNA-binding protein [Oryza sativa] (GB:AAL58954.1); similar to Os03g0748000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051264.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) -0.334656291725315 -4.31205857245211 0.00229711875753558 1 5.65305882761554 12.7450655783958 -0.334656291725315 0.0550828330588154
AT3G57170_at 5.70457414791499 5.47290031389804 5.68479130090333 5.35581179925426 6.74195958133832 6.2305591123441 5.40057684020296 5.05951543958669 5.2117996592352 5.86363740456021 6.00055814255503 5.94146594162235 5.96242605726304 6.0745015825453 5.79747387702394 6.15132260734203 6.49529557979679 5.69711421160449 5.88599799714306 0.234325495177942 0.225056381411797 0.242762515964226 0.229348470204303 0.222420647279649 0.235788387474166 0.235805135918038 0.22770600655434 0.246415544286566 0.222420647279649 0.22997659314037 0.224274990514931 0.236013592797835 0.22543999747943 0.237121968796399 0.223086134129229 0.231350413085013 0.237195271478355 0.222420647279649 3 3 - 21170613 21171326 21171062.455 21170386 21174163 - gene protein_coding_gene FALSE TRUE AT3G57170.1 N-acetylglucosaminyl transferase component family protein / Gpi1 family protein similar to N-acetylglucosaminyl transferase component [Medicago truncatula] (GB:ABD33301.1); contains InterPro domain N-acetylglucosaminyl transferase component; (InterPro:IPR007720); contains InterPro domain Myelin proteolipid protein PLP; (InterPro:IPR001614) 0.477548413024477 4.31005701929484 0.00230355001388227 1 5.65058005818045 11.5407517854046 0.477548413024477 0.127139670166512
AT3G13230_at 6.63219942696796 6.98287359431931 5.85567611959168 6.54681331070136 5.47476810272611 5.3799389731227 6.35527514945132 6.69759869783719 4.86922018940627 4.48807847579151 4.02138235600165 4.68314668966201 4.30069530327721 4.18078238397629 5.12477072259303 4.56844491951352 4.03686635895312 4.2622235008829 4.43599893735404 0.244809098499088 0.245509203270805 0.251267124448654 0.240226680157331 0.251623908380928 0.256341269735677 0.249643774184901 0.250300435734335 0.248812526849743 0.241521351009737 0.249643734656875 0.240671872441303 0.239634463867123 0.241650992833408 0.244784044292046 0.241023619089245 0.248444721770777 0.244766627681280 0.239634463867123 3 3 + 4270556 4271041 4270766.636 4269985 4271211 + gene protein_coding_gene FALSE TRUE AT3G13230.1 nucleic acid binding similar to Isopenicillin N synthetase; KH, type 1 [Medicago truncatula] (GB:ABE83111.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.526582214384146 -4.30752723142360 0.00231170626531641 1 5.6474460917971 10.7381703702771 -0.526582214384146 0.147535669134450
AT3G62450_at 7.1355172756142 7.36762790814476 7.93932524023921 7.99479519874293 7.77296675225231 7.49669880049709 7.51181996319661 7.25110915715718 6.6936199163975 7.10714737936695 7.06055847391896 7.27117175328079 7.11700365247736 6.92810072572306 7.60535162194727 7.43007450427819 7.24189577095623 6.9349271189407 7.01817102108888 0.189502491291560 0.171948472137340 0.180316094871472 0.177373230482192 0.173314887115456 0.178666763670933 0.177132170704882 0.186180560761722 0.186982006201718 0.180624407929390 0.176608952556941 0.171948472137340 0.179601967395274 0.177332232468297 0.175097284969742 0.174255318710427 0.187734848817121 0.177437173604856 0.175990622619057 3 3|0 +|/ 23109128 23109579 23109386.1 23109120 23109606 + gene protein_coding_gene FALSE TRUE AT3G62450.1 similar to hypothetical protein MtrDRAFT_AC140551g45v1 [Medicago truncatula] (GB:ABE91880.1) 0.371708634488620 4.30693860979676 0.00231360848012836 1 5.64671672903494 14.6278733161346 0.371708634488620 0.0776331723288572
AT1G63420_at 5.70425896306999 5.63793013313318 5.8287421924778 6.06018525373534 5.93102515477049 5.98915135286157 6.50896039483022 6.28016348082005 5.30574893116608 5.90672103516527 6.36514850539974 7.29125932195764 6.85158044484092 6.49947316531799 6.72313665955023 6.69839656967657 6.20396758475935 6.48622338559166 6.43097711903532 0.157544405205323 0.163252367066169 0.167013782537463 0.164357294925774 0.154530278432125 0.174683961103779 0.155096669883553 0.157188979566404 0.168713096217564 0.157014383078966 0.162153826978409 0.156664595692517 0.154530278432125 0.169116667313019 0.154805732686834 0.15755464920259 0.154530278432125 0.158821599578932 0.160685105944745 1 1 + 23521615 23522416 23522153.091 23519539 23522575 + gene protein_coding_gene FALSE TRUE AT1G63420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48980.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23850.1); similar to OSIGBa0159I10.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67462.1); similar to Os02g0642700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047557.1); similar to Lipopolysaccharide-modifying protein [Medicago truncatula] (GB:ABD33425.1); contains InterPro domain Lipopolysaccharide-modifying protein; (InterPro:IPR006598); contains InterPro domain Protein of unknown function DUF821, CAP10-like; (InterPro:IPR008539) 0.339098460839572 4.30663472917087 0.00231459117224355 1 5.64634016557148 12.2530757322585 0.339098460839572 0.0583510166889772
AT1G05200_at 7.66622153783138 7.94254353847125 6.7637641016407 7.05173381242249 8.19895220424645 7.24006722080408 8.15403188084783 8.0463959921378 7.80150709354806 8.73010210568574 7.96959600526737 8.1764017919434 7.77812253533322 8.09997815024009 7.33956826598445 8.11539659100556 7.35247146298052 7.64903435990505 8.64852678718225 0.196089578087436 0.201124543317576 0.212216228910869 0.204910751369315 0.192014437109998 0.208324968371336 0.197123420918084 0.200096334583717 0.209346148688762 0.197692117890917 0.202271744886046 0.193131441113621 0.193561848509098 0.195110276259804 0.199013608693133 0.192014437109998 0.209267930718672 0.200942072556632 0.198494271579086 1 1|0 +|/ 1508340 1508959 1508657.8 1504959 1509151 + gene protein_coding_gene FALSE TRUE AT1G05200.1|AT1G05200.2 ATGLR3.4 (Arabidopsis thaliana glutamate receptor 3.4) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.4 precursor (Ligand-gated ion channel 3.4) (AtGLR4) (GLR3.4) [Arabidopsis Thaliana] (GB:Q8GXJ4;GB:O23048;GB:Q8LGM9;GB:Q9SWD9); similar to ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) [Arabidopsis thaliana] (TAIR:AT1G42540.1); similar to ATGLR3.5 (GLUTAMATE RECEPTOR 6) [Arabidopsis thaliana] (TAIR:AT2G32390.2); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to putative ionotropic glutamate receptor ortholog GLR6 [Oryza sativa (japonica cultivar-group)] (GB:BAD45488.1); similar to Glutamate receptor 3.5 precursor (Ligand-gated ion channel 3.5) (Ionotropic glutamate receptor GLR6) (GB:Q9SW97); similar to glutamate receptor, ionotropic kainate 5 precursor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10393.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Metabotropic gamma-aminobutyric acid receptor, type B; (InterPro:IPR002455); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.610988209674929 -4.30650463924866 0.00231501199544034 1 5.64617895543865 15.7346886897858 -0.610988209674929 0.180701414281159
AT2G21330_at 12.2931856218350 12.5780671070156 12.3101908653337 12.4491122194258 12.1177068030823 12.3511993335961 13.3675909967126 13.6058361666219 13.1271450557026 13.484020600989 13.1422083991739 13.3253639538464 13.1910644125484 12.9865128373814 13.0481017403057 13.4929418376111 13.2567615924579 13.2339174638194 13.3062399350013 0.0700878470948183 0.0690925650430846 0.0700974402699264 0.0724477145512454 0.0696874936732629 0.0707586890123933 0.0717546726858147 0.0705274919098236 0.0719014302705921 0.0716907446958515 0.0728986823069564 0.0690925650430846 0.0698038100814333 0.0766817194621246 0.0719293850998592 0.0690925650430846 0.0772532981551224 0.0707481998343698 0.0716230959479314 2 0|2 /|- 9135563 9136014 9135808.75 9135228 9137321 - gene protein_coding_gene FALSE TRUE AT2G21330.1|AT2G21330.2|AT2G21330.3 fructose-bisphosphate aldolase, putative|fructose-bisphosphate aldolase similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-like protein [Hevea brasiliensis] (GB:AAM46780.1); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741)|similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.2); similar to chloroplast latex aldolase-like protein [Manihot esculenta] (GB:AAV74407.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.375155250970689 -4.30386624365935 0.00232356461930904 1 5.64290875186986 25.8918165859732 -0.375155250970689 0.0796307469332096
AT1G21065_at 11.6810728856207 11.5973169955823 12.0230512825394 12.0036688198587 12.1320380629885 12.0148664313143 12.1828966911315 11.9750123865907 11.5117826203541 11.7849205621211 12.1784726972727 12.0528062232960 12.0759795647909 12.014880596497 11.9489034186838 12.3902713497537 12.2938333201273 12.0142421522288 11.7065713769535 0.0777984932014162 0.0770407213321204 0.0798355596577282 0.0785035409179227 0.0778519537953011 0.086894454496405 0.0780652947220449 0.0755791048522921 0.0899582215007369 0.0787393950159899 0.0755791048522921 0.0755791048522921 0.0776749830280327 0.0778777766204013 0.078727606037552 0.0755791048522921 0.0856789103468723 0.0821117885965208 0.0820295993639354 1 1|0 +|/ 7374344 7375570 7374653.333 7374199 7375778 + gene protein_coding_gene FALSE TRUE AT1G21065.1 similar to Protein of unknown function UPF0047 [Medicago truncatula] (GB:ABC75362.1); contains InterPro domain Protein of unknown function UPF0047; (InterPro:IPR001602) 0.318873444149488 4.30131505415021 0.00233186686185973 1 5.63974546126046 23.845706370357 0.318873444149488 0.0438944564431161
AT1G02160_at 7.74324649799268 8.03815959005054 7.72806492654011 7.86981183294939 8.29437687566071 8.27264260533299 7.31368017349015 7.42395483975826 7.52174908976968 7.75411509870275 8.12407453942832 8.12170892361831 7.9797799349011 7.8749622746359 8.132255749054 7.95494413987548 7.56995070815882 7.59008842767611 7.66858896380868 0.149726540597203 0.146434481440049 0.144678305357576 0.150022610037712 0.139191697850389 0.158395306310680 0.143448673039349 0.148053468460065 0.154328178553411 0.143592128682089 0.145089467452323 0.143661601049981 0.143941421195223 0.149398121259695 0.145631973569918 0.139402653252092 0.143652792742741 0.14220685274648 0.142561379004394 1 1|0 +|/ 410848 411359 411150.889 410748 411597 + gene protein_coding_gene FALSE TRUE AT1G02160.1|AT1G02160.2 similar to Os04g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054174.1); contains InterPro domain CHCH; (InterPro:IPR010625) 0.340891660603015 4.29980326030395 0.00233680167853828 1 5.63787040065476 15.6188029866863 0.340891660603015 0.0598726116328621
AT3G06070_at 9.33938631797759 9.36225470891505 8.4897818490059 8.2959103608696 9.83611361909056 9.14819579013936 9.21698040888054 9.05226386680112 10.1061326894299 9.32152063862992 9.44599022208372 9.1817165464809 9.22682034174644 9.36640795819599 8.20171741362752 9.57741454490264 8.5697624217413 9.07650312914186 9.77014040287105 0.158888051001866 0.144201511287552 0.154835267379816 0.168798891266827 0.144775393640154 0.154863122529624 0.146922462044299 0.141331748028236 0.147303493040109 0.147546760759537 0.142738009507297 0.144621973067075 0.143892219074452 0.147710895478700 0.153443814959936 0.146840540955119 0.148493082424695 0.141116125002713 0.149485128670338 3 3|0 -|/ 1831324 1831828 1831508.3 1831063 1831929 - gene protein_coding_gene FALSE TRUE AT3G06070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19190.1); similar to hypothetical protein MtrDRAFT_AC152499g26v1 [Medicago truncatula] (GB:ABE77806.1) -0.476013629468724 -4.29940792950605 0.00233809397296167 1 5.63738000944439 18.4993056064851 -0.476013629468724 0.126988591926902
AT1G77300_at 4.74868409153875 4.85551570472122 5.05124012859018 5.2620979253354 5.62604042978347 5.79242218372931 5.7372527213013 5.42603438222367 4.03922024308214 3.75637197241579 3.99829996330791 3.97112050727896 4.50386565162018 4.52602617110905 4.33223468006561 4.53398166306267 4.11733102977738 4.68524548990166 3.74697442791161 0.273111803032740 0.260400955123327 0.272808166282568 0.268241934412128 0.267142485137894 0.275725987544371 0.272128015475014 0.268154428009893 0.27409862708335 0.274257641858583 0.263241688739461 0.259883206074557 0.275484685331959 0.259883206074557 0.263553256284635 0.259883206074557 0.284785021471274 0.270602052404357 0.270499310622661 1 1 - 29047576 29048024 29047810.091 29044816 29053704 - gene protein_coding_gene FALSE TRUE AT1G77300.1|AT1G77300.2 EFS (EARLY FLOWERING IN SHORT DAYS) Encodes a protein with histone lysine N-methyltransferase activity required specifically for the trimethylation of H3-K4 in FLC chromatin (and not in H3-K36 dimethylation). Acts as an inhibitor of flowering specifically involved in the autonomous promotion pathway. Identical to Histone-lysine N-methyltransferase ASHH2 (EC 2.1.1.43) (H3-K4-HMTase) (H3-K36-HMTase) (Histone H3-K36 methyltransferase 8) (ASH1 homolog 2) (Protein EARLY FLOWERING IN SHORT DAYS) (Protein SET DOMAIN GROUP 8) (ASHH2) [Arabidopsis Thaliana] (GB:Q2LAE1;GB:O80663;GB:Q56WW4); similar to SET domain-containing protein (ASHH1) [Arabidopsis thaliana] (TAIR:AT1G76710.2); similar to hypothetical protein [Nannochloris bacillaris] (GB:BAD42330.1); similar to Os02g0554000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047114.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124) 0.363534685979469 4.29884064503389 0.0023399497078399 1 5.63667626845653 9.40292862539555 0.363534685979469 0.0735052096801865
AT2G32700_at 7.13757140876263 7.45743812620761 7.8221934351596 7.42937518759967 8.10517944042308 7.16608771503329 6.72520045781432 6.45916049763516 7.61952435361994 7.99006706076383 8.84283100757152 8.88021005200882 8.53193237075057 8.62826504989772 8.08370052410277 8.69313659252806 8.43110505299039 7.33244001759959 7.92318242017951 0.165509979558768 0.160258627004232 0.164738166867893 0.169699869179010 0.167165986621879 0.180290046796490 0.179917140775492 0.177741231980222 0.169864573546176 0.166288836266343 0.165469926048133 0.163575237403853 0.171964898704501 0.170854676957729 0.172705809521771 0.162243167315200 0.174474975056857 0.175371257815339 0.161356534142151 2 2|0 +|/ 13877929 13878870 13878437 13873849 13879217 + gene protein_coding_gene FALSE TRUE AT2G32700.1|AT2G32700.2|AT2G32700.3|AT2G32700.4|AT2G32700.5|AT2G32700.6 WD-40 repeat family protein similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to STY-L protein [Antirrhinum majus] (GB:CAF18246.1); similar to STYLOSA protein [Antirrhinum majus] (GB:CAF18245.1); similar to putative transcriptional corepressor LEUNIG [Oryza sativa (japonica cultivar-group)] (GB:BAD67819.1); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.634780480262866 4.29677282442065 0.00234672750010296 1 5.63411056357775 15.4238810477222 0.634780480262866 0.190304384398711
AT3G55770_at 11.1342130533040 11.2120313526911 11.3286886150806 11.2879330153120 11.7735057818417 11.6385548126674 11.0420984066638 10.9757974153668 10.9176965216330 10.9975376371116 11.3539512693852 11.0810788792756 11.3013129334400 11.0317148686847 11.1921659091118 11.130949950959 11.1649283673211 11.0737917688951 11.0069637998828 0.0717451877414376 0.0709592512417962 0.0721856390485792 0.0709592512417962 0.0720800168812702 0.0750270956956265 0.0709592512417962 0.0709592512417962 0.0782310706041458 0.0709592512417962 0.0723812396380929 0.0721108116855661 0.0719670393925906 0.0798107112289876 0.0712298147447636 0.0709592512417962 0.0746796287160518 0.0735231966513887 0.0722154228595823 3 3|0 +|/ 20714871 20716004 20715569.1 20714235 20716299 + gene protein_coding_gene FALSE TRUE AT3G55770.1|AT3G55770.2|AT3G55770.3|AT3G55770.4|AT3G55770.5 LIM domain-containing protein|zinc ion binding similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39900.1); similar to LIM domain protein WLIM2a [Populus tremula x Populus alba] (GB:ABK58469.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) 0.304153128196950 4.29675263453647 0.00234679378135506 1 5.63408550868559 22.3692541714126 0.304153128196950 0.030135516829563
AT4G36390_at 9.48666445808825 9.5884112419526 9.14435288601596 8.84857746587205 9.16665588347186 9.09463229062732 9.6844857969073 9.7224297056173 9.67427551636276 10.0270971066828 9.71235018800336 10.0440718741883 9.4246008149028 9.7173436087912 10.1244677823486 10.0674734341642 9.51383228573877 9.59287805992415 9.9578466472843 0.110899419725867 0.110201885719378 0.122912545286687 0.117792933680218 0.118610733409801 0.116518378800215 0.113852143487015 0.117020278286835 0.123193508714891 0.111747372275116 0.112830571598796 0.110758752516651 0.112853786554755 0.116922826047923 0.112040061996948 0.111594102630026 0.119971366475529 0.116721953811606 0.111853347265720 4 0|4 /|- 17194765 17195144 17194980.3 17194591 17197134 - gene protein_coding_gene FALSE TRUE AT4G36390.1 radical SAM domain-containing protein / TRAM domain-containing protein Identical to CDK5RAP1-like protein [Arabidopsis Thaliana] (GB:Q8H0V1;GB:O23241); similar to radical SAM domain-containing protein / TRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G72090.1); similar to Os11g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068196.1); similar to similar to CDK5 regulatory subunit-associated protein [Nicotiana tabacum] (GB:BAD15110.2); contains InterPro domain Protein of unknown function UPF0004; (InterPro:IPR005839); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain tRNA-i(6)A37 modification enzyme MiaB; (InterPro:IPR006463); contains InterPro domain Deoxyribonuclease/rho motif-related TRAM; (InterPro:IPR002792); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.334361168290097 -4.29228072214954 0.00236152429074162 1 5.62853424967065 19.1725430557946 -0.334361168290097 0.0559324467272534
AT1G64650_at 7.65594965388733 7.80196467750388 6.52876773975 6.92876520021 6.86866597292792 6.66880791898157 7.98738665889098 8.0338323156276 7.09732877527373 7.10313098441385 7.68129388867267 7.84817149565558 7.60396867502896 7.68306261147774 7.81181223976435 6.88422265983421 6.9696766459719 7.1695407697144 7.074738848291 0.213098820163112 0.212511846465128 0.213658105957203 0.216275116027578 0.211551278303612 0.238135538272880 0.220436022926042 0.223055866661745 0.236175645321787 0.212214378691480 0.213283863800936 0.210900108476504 0.219834638570430 0.218207617729616 0.216044812890958 0.214774712983011 0.231956896432676 0.227939315405562 0.214785646880824 1 1 - 24027478 24028820 24028381.727 24027161 24030084 - gene protein_coding_gene FALSE TRUE AT1G64650.1|AT1G64650.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27720.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49310.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93637.1); similar to Os03g0114800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048746.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27720.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49310.1); similar to Os10g0519600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065080.1); similar to Os03g0114800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048746.1); similar to Major Facilitator Superfamily protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47893.2); contains InterPro domain Protein of unknown function DUF791; (InterPro:IPR008509) -0.378147932285648 -4.29140056162170 0.00236443523198237 1 5.62744123447021 14.583368263518 -0.378147932285648 0.0817980897818241
AT3G50350_at 6.39715073877878 6.30651527276087 5.59413380931871 5.74205273970829 6.43287236321653 6.64287548867797 5.62919950628239 5.91549568737757 5.69650469205408 5.19571757539908 6.08827742951312 6.45868962871674 6.12820067418158 6.23737652111383 6.4045952400205 6.14454468010329 5.98256240335218 6.16990920130747 5.71225425478948 0.199107049088821 0.195667355019259 0.199155215330589 0.194631094804051 0.195628283168750 0.200095683784174 0.19457636450236 0.191377864178358 0.198359609345998 0.196690726044741 0.200198097943676 0.192036373121808 0.191157967255708 0.202853151704522 0.191975959787196 0.193625600948885 0.204569135567060 0.193008327825252 0.201637159856091 3 3 + 18684066 18684625 18684290.091 18683888 18684688 + gene protein_coding_gene FALSE TRUE AT3G50350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33985.1); similar to Os04g0282200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052367.1); similar to Os02g0766600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048224.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19985.1); contains InterPro domain Protein of unknown function DUF1685; (InterPro:IPR012881) 0.353918631902424 4.29016617081338 0.00236852421168367 1 5.62590809174323 11.9508344406165 0.353918631902424 0.0683865117772133
AT1G43890_at 8.8540802373274 8.98947932978547 8.90538505022658 8.88242959215283 9.6234130300458 8.9578185690308 8.80726348448787 8.75177577731841 8.16235784593404 7.950480836123 9.08059120019014 8.78350555237937 8.72682564067223 9.03675497301922 8.53213770651547 8.89616169354843 7.69674997243613 8.58872925856283 7.89130468068532 0.205284232251717 0.194510774821383 0.204320628634608 0.201662759460018 0.205342906736802 0.211528570113025 0.205187945152756 0.201176239263201 0.213599373161340 0.205074796862222 0.195196100807961 0.198123099812114 0.194179575883354 0.191302575942354 0.201314900006020 0.195038982873468 0.219791261750001 0.215184561731359 0.20689262562999 1 1 + 16649449 16650739 16650133.364 16649172 16651088 + gene protein_coding_gene FALSE TRUE AT1G43890.1|AT1G43890.2 ATRAB18 (Arabidopsis Rab GTPase homolog C1); GTP binding|ATRAB18 (Arabidopsis Rab GTPase homolog C1) ras-related small GTPase similar to ATRAB ALPHA (Arabidopsis Rab GTPase homolog C2a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G03530.1); similar to RAB1Y [Lotus japonicus] (GB:CAA98164.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.453956365942788 4.28765847991236 0.00237685447916301 1 5.62279264774568 17.3059871940867 0.453956365942788 0.118001804187721
AT1G10960_at 10.4310287378486 10.4922917497489 10.6588465781368 10.8261172632908 10.5606747305218 10.5361853404861 11.768480073177 11.9417935922393 12.2054635620691 11.9140152232105 11.9553233024634 11.8297195811451 11.6447439890946 11.7471577589333 12.1074176069029 12.1183631284039 11.6586590938361 11.9370166954353 11.8683078696182 0.076921074948549 0.0773873046977115 0.0806773526561852 0.0781677778632794 0.0770519644011886 0.0862107779666938 0.0769490321150415 0.0785464084607803 0.082039693514152 0.0761914802777996 0.0761914802777996 0.0761914802777996 0.0765480658993602 0.082272209274245 0.0761914802777996 0.0761914802777996 0.0813093009186593 0.0763104401663562 0.0770559450786582 1 1 + 3664458 3664849 3664723 3664386 3665039 + gene protein_coding_gene FALSE TRUE AT1G10960.1 ATFD1 (FERREDOXIN 1); electron carrier/ iron ion binding Identical to Ferredoxin-2, chloroplast precursor (PETF2) [Arabidopsis Thaliana] (GB:O04090); similar to FED A (FERREDOXIN 2), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G60950.1); similar to Ferredoxin-1, chloroplast precursor (Ferredoxin I) (GB:O04683); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041); contains InterPro domain 2Fe-2S ferredoxin subdomain; (InterPro:IPR006057) -0.317035650291855 -4.28747529453156 0.00237746423316508 1 5.62256502263742 22.8372917729275 -0.317035650291855 0.0432186292120028
AT4G37640_at 8.15588690934292 8.39721056162294 8.29388520221598 8.3684497092645 7.84151023597186 7.25235152294355 6.78027091867349 6.79277253429616 6.81666221877048 6.08064039738845 6.76725523246253 7.69577830114453 6.80449354788274 6.78435542302667 6.67603464369444 6.77979337788424 6.81716169254324 6.85868430358107 6.39112468145548 0.241641688444535 0.233117556066688 0.237063037923455 0.239514918251406 0.247923078309254 0.244652259634551 0.235310424212625 0.242166087969195 0.244759315991956 0.237755419225304 0.245136793929103 0.235047609338909 0.236244304260897 0.251553975138060 0.243927395834433 0.232770300028162 0.256603370329064 0.243631967041541 0.241018164807748 4 4|0 -|/ 17683224 17683957 17683554.556 17682971 17686935 - gene protein_coding_gene FALSE TRUE AT4G37640.1 ACA2 (CALCIUM ATPASE 2); calmodulin binding Encodes a calmodulin-regulated Ca(2+)-pump located in the endoplasmic reticulum. Belongs to plant 2B ATPase's with an N-terminal autoinhibitor. Identical to Calcium-transporting ATPase 2, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 2) (ACA2) [Arabidopsis Thaliana] (GB:O81108); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to ACA1 (autoinhibited Ca2+ -ATPase 1), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G27770.1); similar to Cation transporting ATPase, C-terminal [Medicago truncatula] (GB:ABE85875.1); similar to plasma membrane Ca2+-ATPase [Glycine max] (GB:AAG28435.1); similar to type IIB calcium ATPase MCA5 [Medicago truncatula] (GB:AAM44081.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.437991368010529 4.2864377925575 0.00238092085355684 1 5.6212757163147 14.3990023648659 0.437991368010529 0.110952368481348
AT1G79700_at 5.765255035642 5.54435931368593 2.89849201904224 2.82338614128848 6.16333262390578 4.9970903180093 4.04836363895356 4.00870894671303 7.4736836812061 6.19185763579822 7.62580865382915 7.22089653633498 6.0728333910168 7.43301227767225 6.79390845003907 5.23739129903045 4.26996475666039 6.36611589126656 7.65114331210643 0.256321657688981 0.254722398842482 0.283841512707684 0.263756634213564 0.254751676115668 0.277393498685114 0.252588407355036 0.264026080373603 0.277311068817116 0.256709742745824 0.251485599135936 0.247745632311129 0.253560540072897 0.256386318164791 0.255617084663286 0.251481727752038 0.287427866227833 0.253078008871982 0.247745632311129 1 0|1 /|- 29995407 29996869 29995688.9 29995229 29998617 - gene protein_coding_gene FALSE TRUE AT1G79700.1|AT1G79700.2 ovule development protein, putative similar to ovule development protein, putative [Arabidopsis thaliana] (TAIR:AT1G16060.1); similar to Os08g0442400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061917.1); similar to AP2/EREBP transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10030.1); similar to Os09g0423800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063215.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.674583297121444 -4.28573712727342 0.00238325829811163 1 5.62040488981982 11.2726499796641 -0.674583297121444 0.205937189368807
AT4G25080_at 11.1706354011330 11.2058131154184 10.4175817109331 10.5447985090379 11.0786670755386 10.7555257359649 11.5712071911915 11.7970868983081 12.2603386870072 11.9617790736337 12.2144740647029 12.3231374403776 11.9540476751029 12.1677030457513 12.2169834029015 12.1779464284072 11.6536889058601 11.9945157397778 11.9869652855136 0.0735842973081375 0.0719644599668475 0.0764017554879355 0.0720754082554889 0.0713767084460868 0.0770596581078793 0.07172335890558 0.0746677483964504 0.0779509472886684 0.0721407818377117 0.0741344027415577 0.071243892443019 0.0713689417423064 0.0739984892804114 0.0764004121212546 0.071243892443019 0.0784766881902512 0.0733431434419507 0.0723136469646173 4 4 + 12877438 12878111 12877759.818 12876958 12878657 + gene protein_coding_gene FALSE TRUE AT4G25080.1|AT4G25080.2|AT4G25080.3 CHLM (MAGNESIUM-PROTOPORPHYRIN IX METHYLTRANSFERASE); magnesium protoporphyrin IX methyltransferase|CHLM (MAGNESIUM-PROTOPORPHYRIN IX METHYLTRANSFERASE) Encodes a protein with methyltransferase activity responsible for the methylation of magnesium protoporphyrin IX. Mutants defective in this gene are affected in chlorophyll biosynthesis and show a reduction in the accumulation of a number of major thylakoid-associated proteins including componenets of PSI (LHCI), PSII (LHCII, D1, CP43) and the cytochrome b6f complex (Cytf). By contrast, no significant changes were detected for the proteins of the stroma and the chloroplast envelope. similar to S-adenosyl-L-methionine Mg-protoporphyrin IX methyltranserase [Nicotiana tabacum] (GB:AAF70243.1); contains InterPro domain Magnesium protoporphyrin O-methyltransferase; (InterPro:IPR010251); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Magnesium-protoporphyrin IX methyltransferase, C-terminal; (InterPro:IPR010940) -0.359462327251058 -4.28305302914309 0.00239223538799507 1 5.61706813530934 23.1464176729799 -0.359462327251058 0.0719507002877106
AT4G26160_at 5.54185418010064 5.54739677095096 6.10936675806367 6.34723271366217 6.46873612865783 5.72019988303849 5.38133004047704 5.21846442596155 3.79718064881995 4.98248505277626 4.62190235966434 4.47759083212118 4.60034788019707 4.65169252209512 4.32095693441785 5.36939425896671 5.17461614071052 5.36166573517587 4.89065646048481 0.202641075054701 0.192766449595921 0.202606979168808 0.210176201960048 0.192709240672704 0.207645310514186 0.193217643725681 0.192552951321320 0.219656898604362 0.192946679608002 0.203469219587573 0.194928968582998 0.198251360754775 0.200249955407444 0.204908888244174 0.198637610580557 0.199448737579063 0.199542617942662 0.198771464250532 4 4|0 +|/ 13255372 13256330 13255749 13255260 13256769 + gene protein_coding_gene FALSE TRUE AT4G26160.1 thioredoxin family protein Identical to Thioredoxin-like 2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8LEK4;GB:Q9SZI7;GB:Q9XFI0); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G29670.1); similar to Os05g0200100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054880.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE79237.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.502309647687286 4.28290618062931 0.00239272757680426 1 5.61688554275216 10.4813450560868 0.502309647687286 0.138815586077906
AT3G52640_at 4.95702008886097 5.19616975380591 5.28454736464766 5.04775113165588 5.66964552185146 5.19204278721572 5.37480135869594 5.44803334474742 3.74101752523465 4.16577412082202 4.84549048222134 4.8680577122488 4.65256361848187 4.65437287878856 4.78575756483896 4.78006293647246 4.90557497715078 4.35630182383079 3.94206312375076 0.176227594800192 0.176289134868138 0.180860696396905 0.179182265701971 0.180952262743651 0.184986491564285 0.183014890307441 0.177969676692487 0.187544835766173 0.180574448955188 0.182801000837225 0.176562705386284 0.176022365329895 0.184871914420556 0.177705399782908 0.177008985006291 0.188650763727245 0.181608511840271 0.176923552108796 3 3|0 -|/ 19526087 19531242 19528677.684 19525851 19531522 - gene protein_coding_gene FALSE TRUE AT3G52640.1|AT3G52640.2|AT3G52640.3 nicastrin-related Identical to Nicastrin precursor [Arabidopsis Thaliana] (GB:Q8GUM5;GB:Q9LXJ9;GB:Q9LXK0); similar to hypothetical protein DDBDRAFT_0187645 [Dictyostelium discoideum AX4] (GB:XP_637065.1); similar to Os02g0736500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048054.1); contains InterPro domain Nicastrin; (InterPro:IPR008710)|similar to hypothetical protein DDBDRAFT_0187645 [Dictyostelium discoideum AX4] (GB:XP_637065.1); similar to Os02g0736500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048054.1); contains InterPro domain Nicastrin; (InterPro:IPR008710) 0.417947528733418 4.28277267784738 0.00239317512945652 1 5.61671954106232 9.61157192186346 0.417947528733418 0.101901474222678
AT2G17540_at 6.06630121876696 6.09271948679649 5.91857721648284 5.83011210913754 6.76102282813378 6.45589995740009 6.03599186604091 5.98823222398604 5.86991902465846 5.34089523693462 6.42675156692725 6.05631921036343 6.25453712952636 6.02840969477813 5.86463603898905 6.19853691547275 6.03075213704687 5.74833258130824 5.60374831630503 0.161909472018578 0.159308068430215 0.167156389840329 0.164046252159721 0.158236238535227 0.166725604529969 0.165921435989164 0.161247960339360 0.163928122179131 0.157999999408095 0.154823454431726 0.158932479596832 0.170322674510041 0.162119112243607 0.158269291704817 0.161745239004019 0.165606352319973 0.175261437620367 0.159747788065167 2 2 - 7637818 7638314 7638132.818 7637502 7638994 - gene protein_coding_gene FALSE TRUE AT2G17540.1|AT2G17540.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35510.1); similar to Os06g0728500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058643.1) 0.333386022779885 4.2825701878106 0.00239385412560278 1 5.61646775235245 11.9840514143102 0.333386022779885 0.0557829434198754
AT2G05920_at 8.5487747953172 8.94573780232023 8.16271479684614 8.53630509974174 8.37386539258775 8.30773575871915 9.60697272569933 9.88573129050733 9.62079660746588 9.42242790319867 9.95547252814356 9.80480858417574 9.58612954465987 9.67618626019706 9.7442154525384 9.45654484587476 9.01943035607417 9.850640004106 9.7295120328627 0.117297849521105 0.109879893631179 0.133308165751432 0.119272113339985 0.116744508862120 0.139468888692273 0.112446929970104 0.112289045898487 0.120162537804038 0.114645075469444 0.109879893631179 0.110486620494226 0.112180944740235 0.120402975873424 0.109879893631179 0.111159271542073 0.123655809846751 0.111383352651644 0.115261273992484 2 2 - 2269841 2270373 2270091.727 2269512 2272226 - gene protein_coding_gene FALSE TRUE AT2G05920.1 subtilase family protein similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14067.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to SBT1 [Solanum lycopersicum] (GB:CAA67429.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.427941312845938 -4.28221831603644 0.00239503452586723 1 5.61603019580982 18.4097750217908 -0.427941312845938 0.106569755455263
AT2G01190_at 5.59048237998759 5.9728026977581 6.160777546808 6.36726465541429 6.46353260733116 6.02978716232146 5.25145757602577 5.17310363934977 6.00394543777866 4.91184136653311 5.41695487505457 5.28146110399422 5.90815252523819 5.54632672807287 5.10801532265439 5.60428172872295 5.02836214114341 5.44483059250161 5.0377232633654 0.216551397334297 0.212947045246657 0.220142277143434 0.213923366618827 0.22058798114198 0.229649165149786 0.214414823865902 0.216600618865250 0.219119610863844 0.221186884604458 0.212592917460998 0.215761278747529 0.213968646407732 0.217287524786636 0.215857120223197 0.212943299602714 0.218427184468308 0.212592917460998 0.212592917460998 2 2 + 116716 117269 116979.818 114974 117639 + gene protein_coding_gene FALSE TRUE AT2G01190.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G18230.1); similar to unnamed protein product; contains similarity to unknown protein gb|AAD14519.1 gene_id:MIE15.2 [Medicago truncatula] (GB:ABE90805.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.42892017881774 4.28025854473658 0.00240162028912744 1 5.61359279653245 11.2437184413238 0.42892017881774 0.107109541880981
AT3G45640_at 10.6111115151808 10.5911580554860 10.9264719449715 10.9045883594349 10.9876056637517 10.763469797632 10.1892963068414 10.0640064083288 10.7426130940443 10.0511642363162 10.5404427380116 10.569001549988 10.4581790229573 10.3830960174357 10.2803999443958 10.3913651163434 10.2822522236595 10.5155563697167 10.1739602632749 0.074946150310978 0.0740965596248066 0.0756308002346489 0.0750273920324801 0.0771538368904773 0.0770591320441284 0.0740425088665011 0.0767381244759269 0.0753976507266651 0.0755148764769108 0.073759930951945 0.0723427239527085 0.0744455011235578 0.074489809249698 0.0738440131580386 0.0742924318719952 0.0782350380833625 0.0762159054001042 0.0733648926408936 3 3 + 16769025 16769430 16769206.909 16767755 16769683 + gene protein_coding_gene FALSE TRUE AT3G45640.1 ATMPK3 (MITOGEN-ACTIVATED PROTEIN KINASE 3); MAP kinase/ kinase/ protein kinase Encodes a mitogen-activated kinase whose mRNA levels increase in response to touch, cold, salinity stress and chitin oligomers. Identical to Mitogen-activated protein kinase 3 (EC 2.7.11.24) (MAP kinase 3) (AtMPK3) (MPK3) [Arabidopsis Thaliana] (GB:Q39023;GB:Q9M1E3); similar to ATMPK6 (MAP KINASE 6), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G43790.1); similar to mitogen-activated protein kinase 3 [Chorispora bungeana] (GB:AAV68711.1); similar to mitogen-activated protein kinase 3 [Brassica napus] (GB:AAV34677.1); similar to double HA-tagged mitogen activated protein kinase 3 [synthetic construct] (GB:ABG54330.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain p38 MAP kinase; (InterPro:IPR008352); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527); contains InterPro domain ERK3/4 MAP kinase; (InterPro:IPR008350) 0.318299147461661 4.27984221839103 0.00240302184785363 1 5.61307491707174 21.0047714167994 0.318299147461661 0.0447310244257725
AT3G03870_at 8.54599327769739 8.69193889417319 9.18816268109887 9.32252531057975 10.1072727942470 9.66600105787494 8.73114438717033 8.62516473858008 8.45225262089772 8.01527683517913 8.42746314920412 7.49101551631256 8.85069056244878 8.3606702959312 7.0041973778331 8.53796939458354 8.55326841511466 8.1358372889049 8.50241646355127 0.162640713824686 0.157673098455532 0.163086578585982 0.164069572187723 0.166217028401604 0.162856861086360 0.160138194216656 0.15705005221367 0.159936447934629 0.161429541769865 0.156606125719256 0.16198246056182 0.158431718837468 0.161928414866613 0.177465050177492 0.159289300369047 0.165033952732255 0.167825615830040 0.160757924039794 3 3 + 995757 997129 996028.727 995224 997417 + gene protein_coding_gene FALSE TRUE AT3G03870.1|AT3G03870.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18130.2); similar to hypothetical protein MtrDRAFT_AC156827g15v1 [Medicago truncatula] (GB:ABE86405.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18130.1); similar to hypothetical protein MtrDRAFT_AC156827g15v1 [Medicago truncatula] (GB:ABE86405.1) 0.384626915021894 4.27974743411397 0.00240334106103277 1 5.612957008086 17.3565025459698 0.384626915021894 0.0857111414271875
AT3G25660_at 8.32996192612083 8.3350054348124 7.53273559413019 7.48973116135054 8.23880031375888 7.76465015210931 8.89036304838221 8.69817251924844 8.71313067111783 8.92155017698384 8.78697546430775 9.1943219760605 8.44726303294702 8.86550186305487 9.48039091943197 9.05165288786012 8.3417132852607 8.86542176542976 8.9259328275003 0.126715339400830 0.129324892530578 0.140254145944207 0.143823701992727 0.127863681025451 0.135401097249168 0.127993207038177 0.132830022888521 0.135265724116174 0.126887852235378 0.128609263178873 0.122512596495486 0.129996213536822 0.126183230338941 0.129665352720377 0.125239351198062 0.132723719500681 0.126864162307776 0.122512596495486 3 3 - 9340886 9341841 9341388.636 9340678 9343441 - gene protein_coding_gene FALSE TRUE AT3G25660.1 glutamyl-tRNA(Gln) amidotransferase, putative similar to amidase family protein [Arabidopsis thaliana] (TAIR:AT5G64440.1); similar to OSJNBa0033G05.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD41903.2); similar to H0306F03.6 [Oryza sativa (indica cultivar-group)] (GB:CAH68239.1); similar to Os04g0643200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054049.1); contains InterPro domain Glutamyl-tRNA(Gln) amidotransferase A subunit; (InterPro:IPR004412); contains InterPro domain Amidase; (InterPro:IPR000120) -0.390639584688488 -4.27798886484434 0.00240927181803847 1 5.61076910844871 17.0262740393198 -0.390639584688488 0.088854831356141
AT1G17160_at 7.90792730545885 7.79457280165982 8.07374322012255 8.02361542630111 8.2354379840012 8.36505065277226 7.60421310891698 7.42570999558123 7.29612873282719 7.4527990497434 7.89201377930344 7.76746125295619 7.6586457998265 7.82849260604607 7.5518138439244 7.57436018105222 7.33122891688432 7.24348576050694 7.64181980277694 0.143861560054481 0.143284097221748 0.148121979690772 0.143298042448486 0.142734682681384 0.152635754430453 0.149711567854318 0.145210179129573 0.148086614947801 0.159228777914584 0.138791896311454 0.140293177618996 0.147196833870687 0.148412680257588 0.139334593837481 0.141525874898927 0.152398498550037 0.143909504898336 0.143923339410624 1 1|0 +|/ 5868296 5869151 5868797.6 5867639 5869349 + gene protein_coding_gene FALSE TRUE AT1G17160.1|AT1G17160.2 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to Os01g0665400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043796.1); similar to Ribokinase [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] (GB:YP_618630.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139)|similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to Os01g0665400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043796.1); similar to ribokinase [Symbiobacterium thermophilum IAM 14863] (GB:YP_074600.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.316855628504198 4.27582211394798 0.00241660079503658 1 5.6080726219618 15.4635439598576 0.316855628504198 0.0437882485527715
AT3G50830_at 9.9900723661725 10.2064075461463 10.5337100692881 10.6092921632023 11.0585277684219 10.7190635274546 10.5081534288044 10.5297475929962 10.6477407306366 10.1500062951896 10.9542083255806 10.5177818762258 10.8226069381155 10.7709369082380 10.3155502500353 10.5239313217136 10.1953140319741 10.5969689247148 10.0858251409078 0.109589793673978 0.101561269629756 0.104933634157070 0.105449548309320 0.102533752278696 0.107971464171436 0.108029766809599 0.103126907131578 0.109884795362158 0.103309283940505 0.104525380247495 0.101987400042029 0.101563691435602 0.10390049514457 0.109864324623759 0.101561269629756 0.1176969744544 0.105157841343454 0.106497761704789 3 3|0 -|/ 18905125 18906281 18905491.556 18904826 18906478 - gene protein_coding_gene FALSE TRUE AT3G50830.1 COR413-PM2 (cold regulated 413 plasma membrane 2) cold acclimation protein WCOR413-like protein beta form. Transcript is not detectable. similar to stress-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G37220.1); similar to putative stress-responsive protein [Tamarix androssowii] (GB:AAT01418.1); contains InterPro domain Cold acclimation WCOR413; (InterPro:IPR008892) 0.357095707529308 4.27501751959239 0.00241932840966252 1 5.60707110557118 20.9602149966372 0.357095707529308 0.0709768554767092
AT3G53970_at 6.72614753470108 6.83519110189309 7.29506086661713 7.26812683277763 7.47167133228316 6.95978232130288 6.77862817374906 6.89599479191807 6.29030042990664 6.16794336190938 6.41774561037195 6.40606671798807 6.72895804360895 6.98949317401884 6.02708564988908 6.96976914829274 6.58261528143133 6.45131994631388 6.18479369201498 0.195408311147679 0.200623157069851 0.199033928289382 0.195408311147679 0.198837325883474 0.211211360517479 0.201535126228095 0.203745570810397 0.214390654482222 0.201338795556988 0.195408311147679 0.202327110403124 0.197771143968384 0.206812007463188 0.198166749236963 0.195408311147679 0.206459851964087 0.20248145240847 0.201681718678468 3 3|0 +|/ 19996721 19998085 19997605.5 19996124 19998317 + gene protein_coding_gene FALSE TRUE AT3G53970.1|AT3G53970.2 proteasome inhibitor-related Identical to Probable proteasome inhibitor [Arabidopsis Thaliana] (GB:Q9M330); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48530.1); similar to hypothetical protein MtrDRAFT_AC142224g2v2 [Medicago truncatula] (GB:ABE84928.1); contains domain PROTEASOME INHIBITOR (PTHR13266:SF1); contains domain PROTEASOME INHIBITOR (PTHR13266) 0.398477903112782 4.27414911485297 0.00242227605655946 1 5.60599003275981 13.4218141316218 0.398477903112782 0.0929387690453273
AT2G17700_at 5.46612859288265 5.77089022896971 5.84935018776314 5.42646288471795 5.94280164010733 5.74647561855143 5.18369600943715 5.6831227931628 5.03774582128231 4.82018742749226 5.64257329128523 5.59393976465951 5.70571588507073 5.60908963153872 5.69339142862388 5.49367768350363 5.9947782047355 5.19953536651536 4.76426282774831 0.187885199177744 0.176078937835238 0.180252337968505 0.176278163352629 0.180081817238640 0.185565148417208 0.176078937835238 0.178648894404394 0.185101422587538 0.185165171947425 0.179166471755324 0.180776895299769 0.179885272498933 0.178389066890363 0.179645866353362 0.176228188643200 0.177696108560232 0.187692593144306 0.184843760284535 2 2|0 -|/ 7692924 7693978 7693466.778 7692470 7696518 - gene protein_coding_gene FALSE TRUE AT2G17700.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35780.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G38470.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06436.1); similar to Protein kinase; Amino acid-binding ACT [Medicago truncatula] (GB:ABE89440.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06437.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.478917737411247 4.2732259913528 0.00242541366783927 1 5.60484069441358 10.8789425023653 0.478917737411247 0.129465748838042
AT1G22430_at 7.9411155848359 7.8910885655974 6.6711295855289 6.55790211130635 8.44044916474202 7.96120799867816 8.18328127425475 7.89536886220043 7.38191596246754 8.25215765539951 7.96881744908852 8.67742823024619 7.99271262055333 7.66958187366046 8.53016239402236 8.10013382553443 7.37562834086698 7.2512525337439 8.95848497931877 0.182822663036559 0.181136548654818 0.186841615924008 0.178251414266479 0.187912001622580 0.187426872836457 0.184987896847646 0.181485735977311 0.188692044330995 0.181612790413951 0.187046354625131 0.179411049713772 0.180945427193071 0.188715299091904 0.185704820334999 0.185241258384015 0.192657028513065 0.189774325856539 0.178251414266479 1 1|0 +|/ 7920205 7921553 7921051.4 7919133 7921821 + gene protein_coding_gene FALSE TRUE AT1G22430.1|AT1G22430.2 alcohol dehydrogenase, putative|oxidoreductase/ zinc ion binding similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G22440.1); similar to alcohol dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT4G22110.2); similar to alcohol dehydrogenase ADH [Lycopersicon esculentum] (GB:AAB33480.2); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.410923115294507 -4.27149411104891 0.00243131195481495 1 5.60268400336651 15.7643099888229 -0.410923115294507 0.0990938289332145
AT1G51570_at 8.18755373146538 8.38062764027072 6.68688494858777 6.88633342912308 7.82512669669466 7.47187484809142 7.42697216431957 8.21059257088433 8.68838454646655 7.9301815892917 8.53165977012578 8.3369545958332 7.75395142823262 8.31088667508703 8.42256816501502 7.77071764038849 7.26799450217631 7.8866726352516 8.24849813975881 0.194766616015873 0.178696890779391 0.195050953829333 0.203949520408748 0.182241482827926 0.192793506590943 0.185602603023988 0.176557168829626 0.180016027243835 0.182685918798315 0.180107853018551 0.174143884914549 0.173909677308759 0.181971053284929 0.177267187054166 0.181771929961106 0.202449231140424 0.181493941926630 0.182335634195515 1 1 - 19126046 19126507 19126250.636 19125838 19128356 - gene protein_coding_gene FALSE TRUE AT1G51570.1 C2 domain-containing protein similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12970.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G57880.1); similar to C2 [Medicago truncatula] (GB:ABD33426.1); similar to C2 [Medicago truncatula] (GB:ABE89860.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.543863647384684 -4.27103813853374 0.0024328674275937 1 5.60211609762776 15.7965943045227 -0.543863647384684 0.156315885849965
AT1G30260_at 10.2148966981074 10.5283883375104 10.4712788990156 10.7303726345443 10.8562470091204 10.7924929582302 10.4126970378926 10.7650494362867 9.73780644023616 10.4110558105425 10.8869405319026 10.5465024732714 10.8142202308450 10.6300799952249 10.0342752631781 10.3069847014261 10.5694332737248 10.6914174412054 9.82880082170221 0.101243310298100 0.0963370176179514 0.107762033223269 0.0967508411169824 0.090431727616167 0.0976495913479074 0.0939821778035334 0.0935846769924156 0.100717004167437 0.0944079328539843 0.0951721576685402 0.0956399116559934 0.090905408947539 0.0988565484880116 0.0992945293204861 0.0952913030677058 0.0976119188921733 0.094311998651613 0.090431727616167 1 1 + 10651143 10651379 10651244.636 10651035 10651712 + gene protein_coding_gene FALSE TRUE AT1G30260.1 AGL79 (AGAMOUS-LIKE 79) similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90936.1) 0.399883689566023 4.27103760931294 0.00243286923356154 1 5.6021154384712 20.8726959245089 0.399883689566023 0.093773173238576
AT2G21520_at 9.2575346315206 9.32354097884781 9.35462039410904 9.49906214478932 9.55305201436016 9.27823532585345 8.67270716879153 8.51467480970281 8.62193395640314 8.79034034392664 9.10954959513494 9.05589636140077 8.72371266625712 8.93078370253164 8.91699003401831 8.82288697348807 8.84361184288405 8.71307583560045 8.64866513045936 0.125911978168182 0.127703332081468 0.131215716680420 0.125314515896726 0.129525079867716 0.131596061264597 0.126043412672907 0.129758381588875 0.135277037270376 0.132556554411428 0.126191013356726 0.126554461996555 0.127173796917133 0.135052538529646 0.129476550468543 0.127995847116567 0.136649415980019 0.134206670000328 0.127250446677010 2 2 + 9225242 9225947 9225632.455 9223449 9226288 + gene protein_coding_gene FALSE TRUE AT2G21520.1 transporter similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.340855819356838 4.27028480794562 0.00243543962958026 1 5.60117775702074 17.9699500268356 0.340855819356838 0.0613597020208588
AT1G18440_at 6.28281367226742 6.00378587236498 5.12553780210466 5.36712547468221 5.27148896354204 5.29570006710629 6.53262428557919 6.61053831065755 6.26689209298779 5.87118581319523 6.73108239221795 6.69216323056252 6.1800644993133 6.47844989455708 7.13176140639603 6.48072941979205 4.94684053931838 6.3360597541005 5.78429704803885 0.261604815870093 0.258150864547430 0.277427474364882 0.262021177374824 0.262933948433172 0.292913531816454 0.260978447525495 0.260170426018601 0.270905210828227 0.263390931811353 0.267203747747157 0.254706450010898 0.256812402385325 0.255640686422812 0.254706450010898 0.254706450010898 0.270179888782517 0.254706450010898 0.263553693438112 1 1|0 +|/ 6346295 6347569 6347146.5 6345967 6347903 + gene protein_coding_gene FALSE TRUE AT1G18440.1 peptidyl-tRNA hydrolase family protein similar to peptidyl-tRNA hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G16140.2); similar to Putative Putative Pepidyl-tRNA hydrolase family protein [Brassica oleracea] (GB:AAW81735.1); contains InterPro domain Peptidyl-tRNA hydrolase; (InterPro:IPR001328) -0.347229275533442 -4.268918191956 0.00244011331793286 1 5.5994752582355 11.9843362444245 -0.347229275533442 0.0654132641613419
AT1G21000_at 10.017046894492 10.2929111506104 11.0171228178519 11.0589481795847 11.0430702336691 11.1496090871375 10.0598536874552 10.1965805719141 9.46041649962623 9.76110007325713 8.98580783594252 8.75566464315592 9.91941978511866 9.40214961578447 8.18561550198241 9.93437424850525 10.2063607239802 9.43782363201212 9.612224077138 0.130159223570892 0.127433759850989 0.130045425460576 0.129108464396465 0.132847131398495 0.129023578153987 0.130725709835108 0.122591228822525 0.129935190506705 0.122499512468989 0.129346172463007 0.136879079603057 0.127858242297941 0.128252216785177 0.144114707882663 0.122499512468989 0.134050446878027 0.132364809874265 0.128739986485899 1 1|0 +|/ 7338136 7339040 7338712.1 7337717 7339441 + gene protein_coding_gene FALSE TRUE AT1G21000.1 zinc-binding family protein similar to zinc-binding family protein [Arabidopsis thaliana] (TAIR:AT1G76590.1); similar to Os06g0624900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058108.1); similar to putative zinc-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD35686.1); contains InterPro domain Protein of unknown function DUF597; (InterPro:IPR006734) 0.333872309206303 4.26881990850251 0.00244044980857283 1 5.59935280622893 20.0867172686647 0.333872309206303 0.0568439703491378
AT3G25410_at 7.58497882037094 7.65393841452809 7.32429048934226 7.26094909163798 7.42121840691123 7.92515944952253 8.24648460899493 8.49543475314002 7.82318601098986 8.21555531940712 7.46751731653014 7.78385698898714 7.73687946230385 7.83334347585107 7.98297823798515 7.99392864408082 8.04115624409611 7.06290159340236 8.09567201936935 0.142916029956970 0.143262924709741 0.151431479976176 0.164960723499586 0.145775165223847 0.148867721213817 0.147219608633130 0.149810444487875 0.154479174247580 0.153686133689107 0.15212365672595 0.145523474999899 0.14471476725226 0.154327026942945 0.147714573098209 0.145876843429826 0.150661687622344 0.156548279419275 0.146645818433714 3 3 - 9215802 9216475 9216091.091 9215576 9217727 - gene protein_coding_gene FALSE TRUE AT3G25410.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G12030.2); similar to Os02g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046843.1); similar to Os09g0520600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063701.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) -0.409644497211264 -4.26870359937278 0.00244084807767687 1 5.59920789370444 15.6303691019693 -0.409644497211264 0.0986108398468538
AT3G10500_at 8.48757702724697 8.88874467588425 9.42277891727498 9.50433657027156 8.87489241481379 8.65740275008229 7.1414326462554 6.89948723243612 6.8146825367047 7.25633527725768 6.3407521562571 6.61028013760632 6.10956899910239 6.25632402831224 6.18525460168934 6.65387963458061 7.16746881116037 6.44517115224177 6.76562351181466 0.251271419783604 0.246138150093133 0.255608730922627 0.245861894036233 0.240928831094880 0.263545655656986 0.249943377889236 0.238444760396075 0.252779502556547 0.239815487555023 0.234089347764099 0.237155476238095 0.239711699359644 0.237813837698006 0.233782841387625 0.231733152852486 0.242726491434063 0.25306608163123 0.239591082161053 3 3|0 +|/ 3273176 3273864 3273646.7 3271495 3274035 + gene protein_coding_gene FALSE TRUE AT3G10500.1 ANAC053 (Arabidopsis NAC domain containing protein 53); transcription factor similar to NAC2 (Arabidopsis NAC domain containing protein 78), transcription factor [Arabidopsis thaliana] (TAIR:AT5G04410.1); similar to nam-like protein 9 [Petunia x hybrida] (GB:AAM34772.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.393041299590694 4.26867666355136 0.00244094032205671 1 5.59917433333307 15.1928988036387 0.393041299590694 0.0904906246870317
AT3G14230_at 9.4183962660223 9.44414008955616 9.65401972804557 9.63984265628673 10.1103013586523 9.8485572063726 9.57967428327374 9.42761414725463 8.1169765242328 8.37252282408566 8.45376503904456 8.16378077477617 8.64953838175173 8.3508652301742 8.39493057457726 8.6815314980851 9.11221214833392 8.68938533215781 8.26757332406727 0.140882915917195 0.136970892278998 0.135878719038676 0.145773691301372 0.134613355947749 0.138940236529851 0.134613355947749 0.137495220115994 0.152934857951203 0.140908858846444 0.141007311854510 0.146669998995126 0.144310724624835 0.147473637844432 0.137696863764970 0.135863493473293 0.139774848027656 0.140378312441513 0.146863840851908 3 3 - 4737704 4738184 4737949 4737153 4739148 - gene protein_coding_gene FALSE TRUE AT3G14230.1|AT3G14230.2|AT3G14230.3 RAP2.2; DNA binding / transcription factor encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family (RAP2.2). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12. similar to RAP2.12, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G53910.2); similar to ethylene-responsive element binding protein ERF2 [Gossypium hirsutum] (GB:AAX07458.2); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.327683802856635 4.26699558758765 0.00244670474940667 1 5.59707956238977 18.0474975568453 0.327683802856635 0.0526313889227037
AT1G01420_at 4.19772141443074 4.79866765206265 4.65294082291707 5.07792921785831 6.21816589556957 5.86916927670317 5.47331931059047 5.80755825821096 3.06918787685701 4.39738835304977 3.78054859828728 4.81036810466096 4.74525703789165 4.75080450442514 3.71998663862715 4.58608169042991 4.68080236522757 4.27960838871442 3.74739321424366 0.248118459753686 0.234372968608679 0.234372968608679 0.238801021500888 0.247095443510362 0.239338336780431 0.234372968608679 0.247872076932358 0.243428085027419 0.234372968608679 0.250114688077345 0.234372968608679 0.237460292460779 0.248629271992321 0.244934136472986 0.234372968608679 0.249475813489593 0.245556970888409 0.241991918574246 1 1 - 154591 155131 154891.818 154566 156011 - gene protein_coding_gene FALSE TRUE AT1G01420.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT4G01070.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.533213497877262 4.26430887962085 0.00245594788259271 1 5.59373064604409 9.34051997141778 0.533213497877262 0.152373214459401
AT4G32551_at 7.96250883215769 8.15132065639292 7.83716313561352 7.8664801112137 8.43537727226647 8.39162193552703 7.93161181318078 8.08484108248248 7.23938399422553 7.7658961856338 8.18926291734802 8.0722235142412 8.1761122631387 8.07730188994538 8.08745153098816 8.34103860925225 7.93021155096485 8.10096283695668 7.7708148481863 0.16190961215742 0.148985875385447 0.153821065157617 0.153376357250773 0.159976203120322 0.163368502365606 0.159982744698287 0.155409201041757 0.174279824638168 0.154545039780261 0.148985875385447 0.150962369466084 0.152947847467878 0.160739982335396 0.161401503202461 0.151108356139234 0.163676257787811 0.157020673375959 0.155952788265178 4 4|0 +|/ 15712449 15713315 15712935.111 15707516 15713585 + gene protein_coding_gene FALSE TRUE AT4G32551.1 LUG (LEUNIG) LEUNIG regulates floral organ identity,gynoecium and ovule development. Negatively regulates AGAMOUS . Encodes a glutamine-rich protein with seven WD repeats similar to transcriptional corepressors. Identical to Transcriptional corepressor LEUNIG (LUG) [Arabidopsis Thaliana] (GB:Q9FUY2;GB:Q9SZY9); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G32700.6); similar to Lissencephaly type-1-like homology motif; Single-stranded DNA-binding protein, SSDP; WD40-like [Medicago truncatula] (GB:ABE92662.1); similar to putative LEUNIG [Oryza sativa (japonica cultivar-group)] (GB:BAD52823.1); similar to STYLOSA protein [Antirrhinum majus] (GB:CAF18245.1); contains InterPro domain Single-stranded DNA-binding protein, SSDP; (InterPro:IPR007591); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.314939490345454 4.26172300032806 0.00246487956415255 1 5.59050620450727 15.9395417624141 0.314939490345454 0.0430565875740645
AT4G17150_at 5.81290889382744 5.66541703316385 5.69988531041968 5.81473721346009 6.39144307971865 5.6868986176317 4.81054221390827 4.61391919856275 5.49628394126595 5.09299854655339 6.00071235002596 5.6304711247013 5.23547985564816 5.44907166125145 5.85597144525538 5.27349206290553 5.63450048946278 5.57193212389912 5.29132995995337 0.190573983094199 0.184734497259266 0.191103883809299 0.180513326032225 0.183479887911429 0.188878744817835 0.180072792295123 0.194621308984677 0.184351394550632 0.186619700517301 0.176792322190622 0.176937178429276 0.182655025270305 0.180827123021535 0.178053785336481 0.178061173391771 0.176792322190622 0.176792322190622 0.187289727779400 4 4|0 +|/ 9640430 9641634 9641020.5 9638185 9641790 + gene protein_coding_gene FALSE TRUE AT4G17150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14290.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23540.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); similar to Os06g0609700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058047.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.480230313497382 4.26008893241925 0.00247054165472852 1 5.58846800695559 10.9994646309539 0.480230313497382 0.130652067120639
AT1G12520_at 9.54911987428477 9.36285349615369 9.67582114391521 9.59715560964021 9.46621394621466 9.44414243418733 8.85025342621239 8.67074841019381 8.6676995340771 9.04914935790793 10.1307710703579 8.24259556521102 8.41518292338824 9.11710620838072 10.9245540766001 8.4780458303587 8.59659244158202 9.62380455594097 9.25249653466165 0.136040208988212 0.136581584777688 0.141412178032113 0.131887411732223 0.131014969238795 0.130972989546324 0.135695709041528 0.132597531180097 0.144859915984494 0.130431439114577 0.137885447353049 0.131746908034220 0.134089169833294 0.134184544757248 0.139418736476059 0.133568093083465 0.141296044665119 0.134498241533308 0.131265997279142 1 1|0 -|/ 4267279 4268201 4267640.5 4267104 4268924 - gene protein_coding_gene FALSE TRUE AT1G12520.1|AT1G12520.2|AT1G12520.3 CCS1 (copper chaperone for superoxide dismutase 1); superoxide dismutase copper chaperone Copper/zinc superoxide dismutase copper chaperone. Localized to the chloroplast. Expressed in roots and shoots. Up-regulated in response to copper and senescence. The AtACC activates all three CuZnSOD activities located in three different subcellular compartments. Contains three domains, central, ATX-1 like and C-terminal. ATX-1 like domain essential for the copper chaperone function of AtCCS in planta. similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121)|similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Copper chaperone for superoxide dismutase; (InterPro:IPR011409)|similar to CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2), copper, zinc superoxide dismutase [Arabidopsis thaliana] (TAIR:AT2G28190.1); similar to Cu/Zn-superoxide dismutase copper chaperone precursor [Glycine max] (GB:AAK01931.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) 0.319444628436711 4.25817779909721 0.00247718151405456 1 5.58608362270117 18.4174702390301 0.319444628436711 0.0469462034685988
AT4G12590_at 9.32602218016614 9.6924267606368 9.6636049922047 9.74683600044749 10.0274386526942 9.71630911393394 9.3464880606295 9.36338293869713 8.87244930976376 8.48149504030129 9.01042785739954 9.11280956652717 9.01932942522783 8.98620268014886 9.13042772235128 8.96330412591406 8.78734895807006 9.16924962977386 8.50120202148912 0.114448998201882 0.112751532216405 0.112564894152329 0.111875309778706 0.120520830922669 0.119892638772168 0.121937136640824 0.112034412813574 0.122709543145460 0.115854582557524 0.121888327765705 0.113907821907702 0.120784776108768 0.115832929089768 0.116565503756523 0.111262959196098 0.121894391305880 0.110686869134095 0.115033955338039 4 4|0 -|/ 7451321 7452656 7452173.778 7451001 7453085 - gene protein_coding_gene FALSE TRUE AT4G12590.1 similar to Os09g0497400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063559.1); similar to AT4g12590-like protein [Hyacinthus orientalis] (GB:AAS20990.1); contains InterPro domain Protein of unknown function DUF850, transmembrane eukaryotic; (InterPro:IPR008568) 0.380236288306443 4.25743500521068 0.00247976737651182 1 5.58515671773228 18.4306983971902 0.380236288306443 0.0844724369084738
AT4G23100_at 10.0946102292778 10.1704156120587 10.4590519714068 10.4163997557965 10.4431074722619 10.0440830886144 10.3070036876255 10.3470063761016 10.0794645306823 10.3451800720349 10.9346520154550 10.9251318810408 10.6999948748565 10.7930165297354 10.8757061968362 10.707850765499 10.3287425128395 10.7094773987219 10.0149880945064 0.0907329752594513 0.084100416800906 0.0839986655657458 0.0857744966346407 0.088065412595123 0.0901002886561927 0.0869703502751263 0.0898483618323035 0.100377605017816 0.0859026286233988 0.0855591635226886 0.085125946918097 0.0837811584448839 0.0870065664006328 0.0858377536537406 0.0837811584448839 0.0978810143052955 0.0898455527097265 0.0924039123131715 4 4|0 -|/ 12103472 12104615 12104014.9 12103172 12107310 - gene protein_coding_gene FALSE TRUE AT4G23100.1|AT4G23100.2 RML1 (PHYTOALEXIN DEFICIENT 2, ROOT MERISTEMLESS 1); glutamate-cysteine ligase|RML1 (PHYTOALEXIN DEFICIENT 2, ROOT MERISTEMLESS 1) Encodes the enzyme glutamate-cysteine ligase catalyzing the first, and rate-limiting, step of glutathione biosynthesis. Required for cell proliferation at the root tip. Involved in susceptibility to the bacterial pathogen Pseudomonas syringae. Mutants are phytoalexin defective. Identical to Glutamate--cysteine ligase, chloroplast precursor (EC 6.3.2.2) (Gamma- glutamylcysteine synthetase) (Gamma-ECS) (GCS) (GSH1) [Arabidopsis Thaliana] (GB:P46309;GB:O82759;GB:P92951); similar to gamma-glutamylcysteine synthetase [Brassica napus] (GB:CAK24967.1); similar to Glutamate--cysteine ligase, chloroplast precursor (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS) (GB:O23736); similar to glutamate-cysteine ligase [Brassica juncea] (GB:CAD91713.1); contains InterPro domain Glutamate--cysteine ligase, plant; (InterPro:IPR011556); contains InterPro domain Glutamate--cysteine ligase, GCS2; (InterPro:IPR006336) 0.355589442609587 4.25624346605360 0.00248392149753885 1 5.58366963652429 20.7318926512834 0.355589442609587 0.0710128165870227
AT2G01320_at 8.13750573466348 8.1189612206082 7.93565569613682 7.86384298483393 8.1725641721864 8.07316454136467 8.24093068649766 8.15054709523397 7.65827582587605 7.90193648806976 7.1524477555296 7.29210887402784 7.12218530183845 7.37650960942934 7.41550854114505 7.5974567781053 7.58709165937906 7.16263900466599 7.79207232045387 0.171886245988649 0.161054480527560 0.170800090435024 0.161054480527560 0.168688895262288 0.167759961116313 0.171195908872018 0.163974167476589 0.183898894694623 0.167921412695594 0.170662266982352 0.174355400242145 0.164572129084926 0.172451894081582 0.169575937457898 0.161514898157161 0.166555073288138 0.182650414377028 0.161409599599692 2 2|0 -|/ 154683 155400 155141 154130 158181 - gene protein_coding_gene FALSE TRUE AT2G01320.1|AT2G01320.2|AT2G01320.3|AT2G01320.4 ABC transporter family protein Identical to White-brown complex homolog protein 7 (WBC7) [Arabidopsis Thaliana] (GB:Q9ZU35;GB:Q3EC89;GB:Q9ASR9); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Transporter, ABC superfamily (Breast cancer resistance protein) (ISS) [Ostreococcus tauri] (GB:CAL51470.1); similar to Os01g0121700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041878.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.298265386619258 -4.25479370731857 0.00248898594377993 1 5.58185995025607 15.6478156757648 -0.298265386619258 0.0265572354518035
AT1G67580_at 7.57083902149136 7.82711512119307 8.06016600913554 8.0752364074396 8.48046654578074 8.31749162914875 7.7663772394814 7.68109072292981 7.0343611229849 7.43315610976246 7.41712521626114 7.35761603573826 7.64762814178703 7.44113997924439 6.90070691765117 7.67338121597949 8.04517660107308 7.35795413333195 7.56180364575061 0.167364304787047 0.162910361129078 0.177533759593819 0.163892434000628 0.170627377040066 0.172546932177916 0.172578198586636 0.165933312165748 0.172097987503504 0.174454713838441 0.169973553127708 0.164803571913397 0.173757634952673 0.171875642754036 0.174940213386603 0.170749697340777 0.182708157077634 0.176202220493196 0.169327311703144 1 1 - 25331404 25332932 25332067.727 25330947 25335042 - gene protein_coding_gene FALSE TRUE AT1G67580.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G63370.1); similar to Os02g0602100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047355.1); similar to Os04g0488000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053147.1); similar to homolog of mammalian PITSLRE alpha protein kinase [Nicotiana tabacum] (GB:BAE96756.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.329484346118119 4.25335145457392 0.0024940351747193 1 5.58005926505408 15.3839468318914 0.329484346118119 0.0546532738066852
AT2G31380_at 9.02258370844406 9.03970797897675 8.93048272489719 9.16282087269514 9.65362490486745 9.37743578308358 10.4197605056313 10.3397590141747 9.77907528399601 10.0112602390166 9.45209824734523 9.51681383161126 9.74841382500204 9.51760312119055 9.3715663559582 10.2020638685329 9.95269298233969 9.58396816677875 10.0003238190170 0.114391646853937 0.119673838955050 0.123918303325436 0.123096018248574 0.118660672004038 0.123387207555464 0.120021592071025 0.122052992777207 0.130954117579216 0.113566416372696 0.124787450778142 0.117316156305439 0.118644156964288 0.118917024356513 0.116781185097634 0.113566416372696 0.122864437038238 0.114279012305583 0.117499479158630 2 2|0 +|/ 13389367 13390267 13389977.6 13388987 13390547 + gene protein_coding_gene FALSE TRUE AT2G31380.1 STH (salt tolerance homologue); transcription factor/ zinc ion binding a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. Identical to Salt tolerance-like protein (STH) [Arabidopsis Thaliana] (GB:Q9SID1;GB:Q9C558); similar to STO (SALT TOLERANCE), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G06040.1); similar to salt-tolerance protein [Glycine max] (GB:ABB29467.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.343214480626289 -4.2467580880061 0.00251725861468060 1 5.57182261972277 19.2924581018570 -0.343214480626289 0.064043068998092
AT1G19800_at 7.67110205414134 7.9344319524234 7.9870022550235 7.7825412011022 7.78735844216265 7.72354412831479 8.82834268022059 8.70586545725044 8.02348008209417 8.45883892180944 8.22406275583348 7.97452157182101 8.02402229697667 8.06083176875568 8.27949623639444 8.12625457856174 7.3836632043015 7.99641228641014 8.19315130411858 0.13564685900895 0.127818657846402 0.127153884545837 0.130670480510476 0.129739435842895 0.134483197028750 0.132051397219354 0.135792503164839 0.139730564009729 0.128139548813812 0.130069504671659 0.129367285052459 0.137622000285967 0.140718064417166 0.129115880407017 0.132254928643745 0.164927355144980 0.129978952970959 0.129425849528577 1 1 + 6847401 6847870 6847619.091 6846360 6848094 + gene protein_coding_gene FALSE TRUE AT1G19800.1|AT1G19800.2|AT1G19800.3 TGD1 (TRIGALACTOSYLDIACYLGLYCEROL 1) Encodes a permease-Like protein involved in lipid transfer from the ER to the chloroplast, more specifically, transfer of phosphatidate across the chloroplast inner membrane. Mutant leaves accumulate trigalactosyldiacylglycerol, triacylglycerol and phosphatidate. Chloroplast lipids are altered in their fatty acid composition and as a consequence the development of chloroplasts in the mutants are impacted. The mutant seeds has a higher abortion rate. similar to Protein of unknown function DUF140 [Medicago truncatula] (GB:ABE94318.1); contains InterPro domain Protein of unknown function DUF140; (InterPro:IPR003453) -0.340661355658529 -4.24650834058941 0.00251814283803063 1 5.57151047638214 16.1694309496911 -0.340661355658529 0.0624484952161688
AT3G23590_at 7.74252041434285 7.83980185336135 6.99991255597009 7.52499216486938 7.995800472386 7.66925793529273 8.44393844139528 8.45963944727088 9.03473420110195 8.67108887263472 8.77205513097374 8.5052794444472 8.74307000998732 8.84339226448925 8.02463005437301 8.79973922940064 8.02864345420806 8.67319364562773 8.78774810979181 0.178037952960248 0.178705694877836 0.201692292898490 0.182816108890501 0.179894208851552 0.190359489100797 0.176195124907408 0.171663886603556 0.184057914996498 0.171663886603556 0.173017621519768 0.171663886603556 0.171663886603556 0.171663886603556 0.175320327070210 0.171663886603556 0.185373046823303 0.176135312474288 0.171663886603556 3 3 + 8472905 8473450 8473134.364 8467456 8473634 + gene protein_coding_gene FALSE TRUE AT3G23590.1 similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G48110.1); similar to Os07g0681500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060654.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80015.1) -0.42821212364208 -4.24623422323257 0.00251911372637789 1 5.57116786193955 16.52445330996 -0.42821212364208 0.108356105114998
AT1G23440_at 7.59759813847109 7.77722976410014 8.14643679347795 8.10353181299174 8.31854282477745 7.95759196613466 7.70669893272825 7.59387289570192 7.23246525333973 7.41406502001701 7.48026828143531 7.38173183496615 7.90355346064284 7.68739114413577 7.13319955452114 7.59675199310145 7.78226218642652 7.51474124318908 7.27446062141472 0.0903317472552695 0.0924060199878475 0.094156530426162 0.0962473782517506 0.0919487832346582 0.0929927944513858 0.0912010708314733 0.0909440987366159 0.097497759434393 0.0935013645586446 0.0918274174535548 0.0943547971268806 0.0916020296708068 0.0940136380975414 0.0952546275154031 0.0903462922264346 0.0960186019792779 0.0945568484274865 0.0915344346458382 1 1|0 +|/ 8321948 8323959 8322747.111 8321669 8324229 + gene protein_coding_gene FALSE TRUE AT1G23440.1|AT1G23440.2 pyrrolidone-carboxylate peptidase family protein similar to pyrrolidone-carboxylate peptidase family protein [Arabidopsis thaliana] (TAIR:AT1G56700.2); similar to Os07g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060416.1); similar to hypothetical protein DDBDRAFT_0189325 [Dictyostelium discoideum AX4] (GB:XP_647079.1); similar to Os09g0396300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063100.1); contains InterPro domain Peptidase C15, pyroglutamyl peptidase I; (InterPro:IPR000816)|similar to pyrrolidone-carboxylate peptidase family protein [Arabidopsis thaliana] (TAIR:AT1G56700.2); similar to Os07g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060416.1); similar to putative pyrrolidone carboxyl peptidase [Musa acuminata] (GB:ABC60337.1); similar to Os09g0396300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063100.1); contains domain Pyrrolidone carboxyl peptidase (pyroglutamate aminopeptidase) (SSF53182); contains domain no description (G3D.3.40.630.20) 0.357833206986781 4.24537121786109 0.00252217300592367 1 5.57008912018452 15.3336801046610 0.357833206986781 0.0728318794939914
AT4G29480_at 9.35139337102295 9.30268489457613 8.89030830314351 8.89467264275462 8.62080156817565 8.25389457677653 9.23144619019359 9.44718413013144 9.13876603840042 8.8815524801413 8.93398182419583 9.34008866027071 8.76964550097598 8.94705463159673 9.31387397568879 8.93760970541161 8.17191858276793 8.73481320439914 8.81224039078656 0.124433352457124 0.125926025494308 0.124269248974302 0.126010458584593 0.128449497072835 0.135064399236575 0.122121828888369 0.119661110915053 0.128316681411574 0.123389709086286 0.130375497974368 0.119452020389829 0.119452020389829 0.130636488911900 0.123469326273724 0.123261527830078 0.155433860054791 0.128871480705790 0.124093333018245 4 4|0 -|/ 14486275 14487186 14486731.7 14486051 14487783 - gene protein_coding_gene FALSE TRUE AT4G29480.1 mitochondrial ATP synthase g subunit family protein similar to hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT2G19680.2); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 complex, subunit G, mitochondrial; (InterPro:IPR006808) -0.35941045810727 -4.23682000779128 0.00255270282130516 1 5.55939315593814 17.9179529914832 -0.35941045810727 0.074142394764586
AT3G06660_at 5.60469928576871 6.038336686008 5.09911275334981 5.08060090254360 4.77350193690736 5.53226861307009 4.89637315382218 5.20904761014989 5.20163711639773 5.24893075128364 4.28878735472978 4.42277929807118 4.38934317361624 4.14451509103926 4.58642206519521 4.89484787503782 4.28721750217137 4.32553009457373 5.15597020507131 0.200345534901760 0.199906350777461 0.194523798145060 0.191918916268013 0.197376654563999 0.201946931499903 0.19824667424724 0.190474305824893 0.194233165485301 0.190069742757214 0.19388106162314 0.194361236821446 0.191057901287378 0.202499922086836 0.193945633225676 0.193620877118169 0.198315996076000 0.197127974703655 0.193255866249046 3 3|0 +|/ 2103863 2104724 2104285.889 2102477 2104912 + gene protein_coding_gene FALSE TRUE AT3G06660.1 PAPA-1-like family protein / zinc finger (HIT type) family protein similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT2G47350.1); similar to PAPA-1-like conserved re (GB:ABE83179.1); contains InterPro domain PAPA-1-like conserved region; (InterPro:IPR006880); contains InterPro domain Zinc finger, HIT-type; (InterPro:IPR007529) -0.550246091624692 -4.23636020872051 0.00255435561332679 1 5.55881766805278 10.0890474498967 -0.550246091624692 0.160659262574818
AT1G58220_at 6.35769092463381 6.33017511240174 5.30910574525883 5.6448575582194 5.96454855370626 5.81377621278197 5.62586381806616 5.40524043356386 6.63745177576299 5.62578962128216 5.60322487157784 5.58609878468894 5.70982502723565 6.3998976147175 5.4874162696345 5.86962009954638 5.51124467462304 5.68391180823685 6.34996847794725 0.225110227989228 0.216882364401517 0.215560364656045 0.219232613492560 0.219687954815504 0.224087565986274 0.218924339232091 0.219498836367231 0.217809068717913 0.219331016092903 0.217152869543794 0.221268374273818 0.214480465874396 0.223796915960762 0.21982086651984 0.214480465874396 0.228606172663009 0.220468185391590 0.221088938526306 1 1 - 21562064 21562617 21562312.545 21561908 21566630 - gene protein_coding_gene FALSE TRUE AT1G58220.1 myb family transcription factor similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G09710.1); similar to Os02g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047100.1); similar to putative Myb-family transcription factor [Oryza sativa (japonica cultivar-group)] (GB:CAD23060.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.359834476278161 -4.23620447782459 0.00255491566345648 1 5.5586227456755 11.7743113875524 -0.359834476278161 0.0744121725850674
AT1G54920_at 6.29215814582807 5.9715285660541 6.20505312143541 6.15572477487613 7.18729552884513 6.60018081635062 6.75222885698648 6.32667156194469 5.36583943979486 5.29291891199596 6.22364469031864 6.15023774544628 6.42244623943007 6.20522903260547 5.96115525186001 6.17923671055738 6.07916183729834 6.23664913943463 5.53283625774822 0.185109822733636 0.186756590108107 0.193283019492186 0.199197163348884 0.192694243557406 0.197475986083636 0.187611245195557 0.185168029554815 0.203756374782341 0.190855430081194 0.190911371276366 0.183208653351292 0.196362145549624 0.192012228225348 0.192739005157608 0.185819648481925 0.183874157004662 0.208495546980453 0.188435633068909 1 1 + 20477024 20478016 20477620.727 20474487 20478825 + gene protein_coding_gene FALSE TRUE AT1G54920.1|AT1G54920.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91482.1) 0.493219327681331 4.232703713088 0.00256754020769368 1 5.55423984519433 12.2260643135643 0.493219327681331 0.137471133969987
AT1G09350_at 7.44109907661752 7.36148412502865 4.47882979550076 4.22614919980549 5.24839378074209 4.62280259571841 5.36223170095473 5.33863980628396 3.91085884580035 3.82987538921819 3.92650019729583 4.64563700982678 4.69448725391421 5.1799343627945 4.75013850147811 6.60402034641954 4.04020412043089 3.64474563050705 3.80257953222416 0.255854795140592 0.262933094171523 0.262164064182387 0.256429527012023 0.246526844567606 0.260225744040595 0.245490863124531 0.248930139590114 0.270395072426665 0.260881802367910 0.256891108993637 0.246539776760811 0.248136400525998 0.247568287194987 0.248067308566063 0.250637336128877 0.251583552516363 0.26004493972856 0.251795250406882 1 1|0 +|/ 3020402 3020874 3020621.889 3019821 3021443 + gene protein_coding_gene FALSE TRUE AT1G09350.1 ATGOLS3 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 3); transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G56600.1); similar to galactinol synthase-like protein [Thellun (GB:AAM19710.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.446941331096866 -4.22906947268514 0.00258071697436293 1 5.54968755146348 9.77669360187192 -0.446941331096866 0.117639873756902
AT1G34430_at 7.92550656569809 7.50936266102125 6.26948452203714 5.87190118762029 7.32304935425217 6.64046719553734 8.53979594371285 8.06718812351551 7.41906093198891 7.78023470530416 8.30022755466308 8.44645381976032 7.73939291617922 7.9775246926588 8.39857215535557 7.47129804293777 7.07310748780064 8.05118052718486 7.65415472908688 0.194681418030701 0.202413735464571 0.200115077720437 0.211214251449853 0.206449762893224 0.211824323118561 0.201230175086257 0.219150460483296 0.210134761702821 0.20723966055043 0.198968048002933 0.197359909523371 0.208526592325378 0.199276656192243 0.205851924029139 0.201021763055305 0.205000948056418 0.193939127128120 0.203470922484463 1 1|0 -|/ 12588052 12588904 12588429.778 12587730 12590170 - gene protein_coding_gene FALSE TRUE AT1G34430.1 EMB3003 (EMBRYO DEFECTIVE 3003); dihydrolipoyllysine-residue acetyltransferase similar to LTA2 (PLASTID E2 SUBUNIT OF PYRUVATE DECARBOXYLASE), dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G25860.1); similar to Os12g0182200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066319.1); similar to dihydrolipoamide S-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95959.2); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) -0.584917448925485 -4.22864245940315 0.00258226996780323 1 5.54915251673826 15.0433626633548 -0.584917448925485 0.174821600597353
AT3G62260_at 5.0137515025806 5.18359183887351 5.85858929117761 5.85850215886148 4.56609895789867 4.4254677145263 5.78347761320911 5.58983339815891 4.58302749938847 4.69222984955775 3.88050288298849 4.025869354492 4.37835745179725 4.30337749287001 3.62603368860664 4.24139671616055 4.51238048178829 4.60688198860029 4.60180883481457 0.213729470742946 0.209986005326888 0.218863669885784 0.219272470994317 0.213576471061066 0.208417791577201 0.233508404011900 0.218727866842590 0.206900119066501 0.205555010995446 0.212570930023676 0.222392918853573 0.216761475851718 0.208339742312740 0.205555010995446 0.207869414871191 0.219842835672973 0.205555010995446 0.207364909168111 3 3 - 23049520 23050011 23049738.091 23049265 23051559 - gene protein_coding_gene FALSE TRUE AT3G62260.1|AT3G62260.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G48040.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE82399.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.322168889173421 -4.22789975015533 0.00258497349804997 1 5.54822184804055 9.69618342695238 -0.322168889173421 0.05078527162738
AT1G13210_at 8.79372860789451 9.0952047642733 9.14142429059746 8.90357303270783 9.26224013671195 7.92966520924655 5.21615331541995 5.18602752793764 7.98354999846122 6.57192172308625 6.94859453990205 7.55202765995947 6.64653676496022 7.34019422783766 6.21134294238946 6.71332135973559 5.54148085097859 7.2556337212015 6.44313987637013 0.2737318342518 0.277418895078793 0.274130371432579 0.275924949897451 0.28553726438085 0.284982259759541 0.27815856690041 0.277015480742533 0.274495958783097 0.279113255561024 0.277086132467264 0.270626779891644 0.276742938841006 0.296631716162027 0.272771222422913 0.270626779891644 0.287109678077215 0.272025950306743 0.277384283045282 1 1 - 4509281 4509795 4509551.545 4508960 4513935 - gene protein_coding_gene FALSE TRUE AT1G13210.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 11 (EC 3.6.3.1) (Aminophospholipid flippase 11) (ALA11) [Arabidopsis Thaliana] (GB:Q9SAF5); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G26130.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase-like hydrolase, type 3; (InterPro:IPR013200) 0.75652571124965 4.22775415689236 0.00258550382707495 1 5.54803939771012 14.8288414644369 0.75652571124965 0.240049001250062
AT4G36970_at 6.598808533018 6.95563521777754 5.26560076167812 5.29540886774893 4.99964985060081 5.13240538116208 4.51551144056197 4.83159951378746 4.92473140910426 5.37828786880691 4.98535456569949 5.76609681741523 4.45381818869908 4.78266122962736 5.97646552765301 4.85781896005987 4.60420816633044 4.93637684983590 5.45711606831884 0.278907087796243 0.27968945677351 0.275277670110826 0.275279696109239 0.271712136572086 0.281431297583715 0.27847924791381 0.281223566299931 0.284245809135007 0.276028387235688 0.275517214800621 0.273638201890342 0.279864955249821 0.277493367912965 0.271712136572086 0.271712136572086 0.298930479059744 0.282082508724874 0.275503293057414 4 4|0 -|/ 17429838 17430533 17430169.4 17429739 17431680 - gene protein_coding_gene FALSE TRUE AT4G36970.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT1G45207.2); similar to Remorin, C-terminal re (GB:ABE89592.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) -0.38007543578352 -4.22744756363484 0.00258662098670430 1 5.54765517788669 10.5986916892461 -0.38007543578352 0.0857886108916992
AT1G29820_at 4.93196520303793 5.37835966321475 5.09324815760379 5.62850977322357 6.09106088385615 5.67343745611793 5.51279854298314 4.83320791531878 4.27360945067347 4.1130327168081 4.78585675687773 5.42510608382858 4.75033713922907 5.01058200657823 4.55044444810032 5.03795668006961 5.01075361531918 4.70479707928962 4.07664074636411 0.233928790151997 0.243262183469278 0.238544206377465 0.233978646485873 0.234603019078499 0.239720003731713 0.238751477772258 0.250911239874514 0.255498245703752 0.238783280678255 0.234974695098637 0.233404561585029 0.234872542483812 0.23980296456491 0.235339371812732 0.233404561585029 0.244550913239557 0.257690360301242 0.240969369689207 1 1|0 +|/ 10439985 10440545 10440257.9 10437641 10440770 + gene protein_coding_gene FALSE TRUE AT1G29820.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29830.1); similar to Os01g0664100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043790.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93751.1) 0.606266412387348 4.226027318204 0.00259180281830595 1 5.54587512364657 9.92477688147456 0.606266412387348 0.183309394067700
AT1G36380_at 7.1791480238158 7.49051750953868 7.44772773516645 7.87650865647522 8.53042860248001 7.86937752004442 7.14505192277645 7.41560629017155 6.77518231945665 6.88277332241692 7.22193935005298 7.13116405445406 7.76105666325598 7.66730011725682 6.91863174006125 7.72191941674892 7.16086547648863 6.71098294401468 6.87948505653831 0.143834893506336 0.144934879555964 0.148204114973010 0.141818185330663 0.140449826470529 0.151591551848730 0.15334052869307 0.140134512101286 0.153734150298608 0.151182511335955 0.140134512101286 0.142844820726326 0.141458711174343 0.147849227205219 0.144407169341805 0.145188486774304 0.140134512101286 0.152193756499647 0.140206465773868 1 0|1 /|+ 13702330 13702447 13702388.444 13702026 13702844 + gene protein_coding_gene FALSE TRUE AT1G36380.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15488.1) 0.532174298060139 4.22579572813037 0.00259264884161916 1 5.5455848282527 14.6855688007731 0.532174298060139 0.153910914234492
AT3G56060_at 8.61657311353583 8.79672289890347 9.07241334317406 8.89696383319442 9.36687443207629 9.24675768374392 9.21599868576896 9.17657657939719 9.40388068239095 9.0573748026632 10.2265887372826 9.69355276839627 9.89318692408433 9.80614674354056 9.60109369114747 9.28048500541647 8.95773599740028 9.87721167537315 9.20767945607875 0.109780735149195 0.105433126566017 0.103184967051777 0.107964841302806 0.107780285170495 0.110277029257253 0.102654270316023 0.106071409643397 0.110935911992239 0.105680363980489 0.107800123621396 0.103271814690758 0.106556714645454 0.110238890027377 0.103956551370126 0.105732249464904 0.126495828115584 0.111561556895001 0.107289596367459 3 3 - 20814470 20814937 20814734.727 20814112 20816992 - gene protein_coding_gene FALSE TRUE AT3G56060.1 glucose-methanol-choline (GMC) oxidoreductase family protein similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G51950.1); similar to glucose-methanol-choline (GMC) oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G51930.1); similar to putative mandelonitrile lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD29242.1); similar to Os04g0573100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053612.1); similar to Os10g0524500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065107.1); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Alcohol oxidase; (InterPro:IPR012132) 0.319153191382495 4.22428586097907 0.00259817181925827 1 5.54369199643022 18.4935993244948 0.319153191382495 0.0487076213059116
AT3G19820_at 9.29316338465096 9.47616048874677 5.86461699131081 7.12009234659267 8.20903275249625 8.26942220442171 8.67944558086781 8.9799122640072 10.0394166769030 9.50916388420107 10.7674894889694 10.6624795429676 9.63674064435476 10.1501169094976 10.6620039080399 9.54242198097308 8.85737784959521 10.1596755385201 9.6979430806394 0.154514178093294 0.150080410824524 0.213731260955664 0.210842859975584 0.154754185662648 0.163800012146421 0.160271641499835 0.151887715191214 0.159351397253313 0.152054414261645 0.157322864593785 0.153202962888948 0.153361083829141 0.158657614617691 0.152303744005209 0.150080410824524 0.162148767473386 0.155655660507964 0.150080410824524 3 3 - 6879852 6880508 6880220.545 6879623 6882321 - gene protein_coding_gene FALSE TRUE AT3G19820.1|AT3G19820.2 DWF1 (DIMINUTO 1); catalytic Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein. Identical to Cell elongation protein DIMINUTO (Cell elongation protein Dwarf1) (DIM) [Arabidopsis Thaliana] (GB:Q39085;GB:Q38808;GB:Q8RXF4); similar to brassinosteroid biosynthetic protein LKB [Pisum sativum] (GB:AAK15493.1); similar to ovule/fiber cell elongation protein Ghfe1 [Gossypium hirsutum] (GB:AAM47602.1); similar to diminuto (GB:AAA67055.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) -0.71771616845629 -4.22362841186735 0.00260058066296907 1 5.54286766570238 18.1382954750264 -0.71771616845629 0.225876673729009
AT3G62970_at 7.79238392145434 7.48393289990999 8.11413466906372 8.01649750013182 8.50846568752166 7.8854723647168 7.70197667692115 7.66035103481485 6.91128998267452 7.15344357298422 7.67169331026771 7.130465241027 7.29821077527322 7.68516533148195 7.67238028617171 7.56805709230165 7.75399832690173 7.32237813798529 7.15573604868846 0.169303180599902 0.175647512657688 0.183121200536028 0.177021964576536 0.173351664658317 0.175432230593172 0.171676776720534 0.171425343381155 0.186768905210903 0.179154838309578 0.165764927415611 0.168627358992003 0.171784431571305 0.172455129870281 0.180541143582089 0.17621347505828 0.171267816763847 0.179262954619291 0.178748237698384 3 3|0 +|/ 23282234 23283633 23282983.875 23281608 23283898 + gene protein_coding_gene FALSE TRUE AT3G62970.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G18650.1); similar to Os03g0348900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050105.1); similar to Os12g0538500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066941.1); similar to PGPD14 [Petunia x hybrida] (GB:AAD02556.1); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.455392558321985 4.22251596945696 0.00260466202905686 1 5.54147267661726 15.1885435597128 0.455392558321985 0.121696737938741
AT3G11510_at 10.4073191483329 10.6793744895289 9.87965803080441 10.0177685244533 10.2981232590107 10.0109390941272 10.7021419855571 10.849104098671 10.2293378819331 10.1128266341410 10.0220133629304 10.4182420884356 9.8443509346981 9.9471539374604 10.6116991380617 9.56546354941767 9.8754183810082 9.70380615568895 10.0068303164358 0.0959795394290236 0.0967239331528677 0.0927335177054697 0.0935366496422078 0.088703259024341 0.088589466660319 0.0944366563722564 0.0937649146333995 0.0949939662104587 0.0890466570306565 0.0930779162557377 0.0919380077735569 0.0922525723539494 0.0914185387080358 0.0945593456242081 0.0936119237445968 0.094284860551486 0.0915777862869379 0.0912859042108952 3 3|0 -|/ 3623789 3624521 3624137.111 3623463 3624945 - gene protein_coding_gene FALSE TRUE AT3G11510.1 40S ribosomal protein S14 (RPS14B) Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14A) [Arabidopsis thaliana] (TAIR:AT2G36160.1); similar to cytoplasmic ribosomal protein S14 [Brassica napus] (GB:AAO41731.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) -0.362837935398815 -4.22069482721554 0.00261135834444404 1 5.53918851676893 20.4129786059603 -0.362837935398815 0.0768411863366834
AT3G51550_at 9.63255993189521 9.599475194798 9.38533792344086 9.47294413105295 9.775454656125 9.61180070861698 8.92847727479015 9.4691046543395 9.58574560388633 9.17639067894072 10.3089948090972 9.8661149790135 10.1399467346791 10.1143268287704 9.9970871970354 9.81973235927134 9.57706558547532 9.45892995870505 8.99620953789208 0.0935023450988803 0.0885127434462691 0.0918362809261934 0.0897835217101417 0.0879062456680534 0.0919444174023834 0.0926916234165926 0.0902999825119585 0.091687245706429 0.0898004547348901 0.0858383515009584 0.0858880874731835 0.0856585840125815 0.0856585840125815 0.087699610150654 0.0856585840125815 0.0918534095561365 0.0876785706389019 0.0946560665847372 3 3 - 19128884 19129418 19129205.273 19128563 19131860 - gene protein_coding_gene FALSE TRUE AT3G51550.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G39000.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G28680.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G04690.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD81103.1); similar to receptor protein kinase-like protein [Capsicum annuum] (GB:AAL40864.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.405736478559721 4.21777074472662 0.00262214883869937 1 5.53551977874448 19.0659226827551 0.405736478559721 0.0990849447915006
AT4G01710_at 6.64651569229759 6.78972501391788 6.43761830009245 6.79985823683353 7.37663331968028 6.63483062172824 6.19631446948587 6.11304177658824 5.58916690859508 5.00995351990854 6.21248411201193 5.80635178304486 5.49134569891941 6.20249406212115 6.04929999430912 6.28177630415176 6.11829130066889 5.35384068061598 5.28096201242072 0.231782642371203 0.223194377324901 0.244353301258101 0.233550261763635 0.225133960550937 0.223807892931757 0.231912543172697 0.231371206678012 0.241495030314251 0.237486286421184 0.225519192794777 0.233644463593249 0.226020420006165 0.229118054793111 0.222819649951041 0.229360393133017 0.235980982246969 0.221695539493404 0.223586775405973 4 4|0 +|/ 735968 736426 736214.75 735753 736604 + gene protein_coding_gene FALSE TRUE AT4G01710.1 CRK (CROOKED) belongs to the DIS(distorted) gene family. Encodes a actin polymerization factor. Involved in cell expansion of trichome. similar to Actin polymerization factor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94290.1); similar to Os11g0557900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068095.1); contains InterPro domain ARP2/3 complex 16 kDa subunit (p16-Arc); (InterPro:IPR006789) 0.510980279925086 4.2160443086509 0.00262854222011714 1 5.53335297754228 12.2407403316389 0.510980279925086 0.145708765740816
AT3G10380_at 8.49407008581712 8.43210274187328 8.78023847187463 8.62621729827978 8.46783358306751 8.24308360474033 8.23551966352136 8.32801708747377 7.99108124006794 7.327289804916 8.19393993419647 8.39654905230031 8.4095067682019 7.94979623997185 8.4143063129985 7.99201987254856 8.0152135938999 7.6575114277617 7.60944429924816 0.166001345033115 0.168010967412105 0.162838178715904 0.165939154546276 0.159931744961072 0.162875677734478 0.160965746728638 0.159791918329855 0.193669898442024 0.175085609025887 0.159541130476956 0.158073778018805 0.160189298388392 0.166132670394517 0.158073778018805 0.159650975866266 0.163597535534472 0.174586874694355 0.161421316159027 3 3|0 -|/ 3219938 3221296 3220589.857 3219528 3228938 - gene protein_coding_gene FALSE TRUE AT3G10380.1 SEC8 (secretion 8) Subunit of the Putative Arabidopsis Exocyst Complex Identical to Probable exocyst complex component 4 (Exocyst complex component Sec8) [Arabidopsis Thaliana] (GB:Q93YU5); similar to Os08g0318500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061521.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72704.1); contains InterPro domain Sec8 exocyst complex component specific domain; (InterPro:IPR007191) 0.321458065155023 4.21593257805438 0.00262895655966996 1 5.53321272957315 16.3364905745704 0.321458065155023 0.0509353705589972
AT2G43790_at 7.9209509887111 8.07116194337984 8.33870961203832 8.26220218488283 8.68544122300087 8.32994767493227 8.21828566897959 7.95255428682177 7.54337654652904 7.25688497895711 7.7258508373062 7.47331678157286 8.06430433196083 7.81749832987273 7.73762324059544 7.81126106216157 7.88907313936614 7.7181592337007 7.3963804170907 0.168015679743202 0.161479822677353 0.156048998377553 0.160024849243582 0.157496636247123 0.160099052070895 0.151767251340128 0.159689878121383 0.166150529237919 0.161088305746689 0.158412842720256 0.151729308600216 0.159253437425527 0.153350811932444 0.159150368310388 0.150903552214032 0.170661947886204 0.150517896192221 0.15961834851818 2 2|0 +|/ 18146940 18147737 18147286.5 18145384 18148065 + gene protein_coding_gene FALSE TRUE AT2G43790.1 ATMPK6 (MAP KINASE 6); MAP kinase/ kinase Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress. Identical to Mitogen-activated protein kinase 6 (EC 2.7.11.24) (MAP kinase 6) (AtMPK6) (MPK6) [Arabidopsis Thaliana] (GB:Q39026); similar to ATMPK3 (MITOGEN-ACTIVATED PROTEIN KINASE 3), MAP kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT3G45640.1); similar to Mitogen-activated protein kinase homolog MMK1 (MAP kinase MSK7) (MAP kinase ERK1) (GB:Q07176); similar to double HA-tagged mitogen activated protein kinase 6 [synthetic construct] (GB:ABG54333.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE83899.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 0.37204608689097 4.21447111541302 0.00263438267859982 1 5.53137805091338 15.8116649563897 0.37204608689097 0.0821609795010081
AT3G28760_at 5.45109228401625 5.27655440240042 4.71502717053834 4.6601612870681 5.2110839967499 4.65334595935081 7.01318424996336 6.2161721999518 5.21489492317049 6.15143022039331 5.08603867387614 6.12648514318983 5.45530216511862 5.9143769132925 6.21588488738506 5.62021351838172 5.723967980034 5.74706767125157 5.74632647168385 0.213272368374726 0.201809134583533 0.220447452432953 0.207637334831301 0.196510429017179 0.207724576584110 0.202907922228172 0.209073567950214 0.214418901576118 0.198872263441602 0.199935326816884 0.200561694195237 0.202010060674066 0.209897583674023 0.204862227836066 0.200180041464254 0.205724111120277 0.198091297447868 0.197375877283308 3 3|0 -|/ 10794405 10795195 10794811 10794192 10796549 - gene protein_coding_gene FALSE TRUE AT3G28760.1|AT3G28760.2 similar to 3-dehydroquinate synthase [Methanothermobacter thermautotrophicus str. Delta H] (GB:NP_275723.1); similar to Os03g0170300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049107.1); contains InterPro domain 3-dehydroquinate synthase; (InterPro:IPR002812) -0.573698133336272 -4.21199913269693 0.00264358803381233 1 5.52827393979954 11.1197698558292 -0.573698133336272 0.171295592550105
AT3G14240_at 7.97357333053304 8.21806731687126 5.38794758980025 5.58283506578773 6.89941251697104 7.19409861105945 6.89755134735821 7.24862732220691 8.26548160531932 7.55335667398596 8.92787678056586 9.03730196138075 8.10042385951836 8.79769616906498 9.25923740692502 8.05071571238992 7.19969159897975 8.53841934888566 8.08591260741066 0.144053706388654 0.146947043585696 0.151291202401939 0.159499681500175 0.152775457411242 0.147573679361624 0.147293960952018 0.146916609296263 0.148728598609675 0.143608140500461 0.138034531601918 0.138351849041038 0.142851420621936 0.143502739485500 0.140471316273958 0.139340368163905 0.149764512073798 0.143533155704075 0.140884201320271 3 3 - 4741661 4742219 4741960.727 4741480 4744124 - gene protein_coding_gene FALSE TRUE AT3G14240.1 subtilase family protein similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to SLP2 (subtilisin-like serine protease 2), subtilase [Arabidopsis thaliana] (TAIR:AT4G34980.1); similar to subtilisin proteinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94911.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.398855662097962 -4.21158535568861 0.00264513225754035 1 5.52775424802392 15.1538494627164 -0.398855662097962 0.0960184678132154
AT3G09010_at 6.39255484728382 6.66945625384055 8.14070061342623 8.20415765802779 6.04318177706496 5.61011488095788 4.65286374849157 4.76529513628325 5.70480499499046 5.32971639949462 4.6491813509083 4.7931655142213 4.29319031310597 5.04867232415702 4.3904404955602 4.61244246948157 4.3910589581366 4.49918326514769 4.51686879814841 0.232412509677646 0.235490534009430 0.235352780232229 0.241345517621185 0.235405801233696 0.238198051050075 0.242264915719926 0.238832974190810 0.249468532360849 0.236243960396093 0.233812523910037 0.231062074355393 0.23275595373521 0.230571907196282 0.247088569139686 0.230571907196282 0.232857323570430 0.235891181273629 0.230571907196282 3 3 + 2751289 2752053 2751783.545 2749958 2752281 + gene protein_coding_gene FALSE TRUE AT3G09010.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16670.1); similar to putative receptor ser/thr protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06827.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.390183170678212 4.21128400895892 0.00264625749851274 1 5.52737574645105 11.1940223980308 0.390183170678212 0.0917171659809737
AT3G44450_at 10.4423613452544 10.6305095651774 10.2928391517097 10.4940408669011 10.4346391109769 9.83955506086786 11.1911244834729 11.1164956900146 10.2687788550886 10.7722879668954 10.5081661002947 10.2837935759013 10.2190055437164 10.1653307258125 9.64565603176366 9.78150180140578 10.1398077277891 10.1322791879600 10.1708588475165 0.113320916539053 0.112844900897698 0.121916938454425 0.116391048120803 0.114321912479103 0.122316655150086 0.11356602343733 0.111791261732049 0.125767510242725 0.113027274538741 0.114650271950298 0.113252318489763 0.113750199300937 0.121989684295934 0.125592878718135 0.113566228530154 0.119134726821010 0.118090828320293 0.111728478745229 3 3 - 16085235 16085539 16085349.273 16085083 16085665 - gene protein_coding_gene FALSE TRUE AT3G44450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52740.1); similar to H0717B12.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67161.1) -0.437193429851144 -4.20873905979976 0.00265578095527468 1 5.52417856908271 20.8119045642955 -0.437193429851144 0.114212979655645
AT1G34200_at 6.78038133194837 7.13537052225897 6.87773301834878 6.60192847047331 7.823705456076 7.48336746729716 6.85080093379824 6.53894142356158 5.58501831470415 5.408188584092 5.68518284469611 6.05870964409918 6.00566683598509 6.44706599161001 5.69460986951608 6.15700238944293 6.50815007830081 5.34967254286543 5.49610296449473 0.252998038406646 0.241796379914761 0.247599480753286 0.250112598059375 0.241796379914761 0.251510457959716 0.244063600941844 0.246046275395629 0.265003415359473 0.244295746328233 0.24520684595869 0.241796379914761 0.246264635276791 0.245555472243749 0.24605313993198 0.241796379914761 0.243031931938134 0.255858795343769 0.245970844067050 1 1 + 12456382 12456824 12456564.636 12455686 12457390 + gene protein_coding_gene FALSE TRUE AT1G34200.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G09670.1); similar to AX110P [Daucus carota] (GB:BAA03455.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) 0.431065476812261 4.20686289181258 0.00266282531392801 1 5.52182084216392 12.753875650801 0.431065476812261 0.111505738453186
AT4G01570_at 4.85659276450303 4.35162681528804 4.50625074284783 4.20293242351527 4.69127983055895 4.6054249051593 5.55008106942734 5.22042613045042 4.89184744864595 4.99434378324042 4.9814286567227 4.75666703617616 4.48272693205904 4.65320370065304 4.66780143041127 4.85052260025508 4.33012761745677 4.20715804769079 5.15103920284463 0.207111133851104 0.207747430858839 0.202554715383880 0.210251882474271 0.208812662410403 0.209978377165658 0.200719945991945 0.207644167357177 0.211420028190018 0.208316505860712 0.205219793723170 0.210568163645818 0.202848934870154 0.213498151909217 0.204892952103199 0.200719945991945 0.205197480251514 0.219903755284141 0.216059314564135 4 4 + 681312 681773 681505.455 679472 681940 + gene protein_coding_gene FALSE TRUE AT4G01570.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABD33347.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.44470768081455 -4.20544008583477 0.00266818082296509 1 5.52003243040568 9.5623841590130 -0.44470768081455 0.117758079680563
AT3G20790_at 7.76817372868205 7.8858824667844 7.05437599356187 7.01042703841985 7.71972118653917 7.27411041096143 8.27667653182103 8.18676372851883 8.5475248535206 8.52072861872116 8.94855529701278 8.71065281320902 8.00581356153279 8.80853674411518 8.87122286294686 8.34184826169547 7.96142964807518 8.4694894652501 8.4020520053275 0.169358093438324 0.160089268430084 0.176874585752067 0.159141911407698 0.161562353872190 0.168063265377814 0.170617421674035 0.17126054899384 0.176131370690386 0.157962550553636 0.156976092804978 0.149814187779648 0.156562084327926 0.161704268477671 0.159237197250507 0.153488956272535 0.17023690582589 0.158228126258714 0.153672737122709 3 3|0 +|/ 7269706 7271070 7270632.625 7268758 7271293 + gene protein_coding_gene FALSE TRUE AT3G20790.1 oxidoreductase family protein similar to Oxidoreductase, C-terminal [Medicago truncatula] (GB:ABE85999.1); similar to Os09g0280300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062764.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) -0.370061850353871 -4.20341563721334 0.00267582087429995 1 5.51748716487701 16.1494140894541 -0.370061850353871 0.0816187390993485
AT4G30530_at 11.724782499462 11.7705122929337 12.0408037071693 11.9027308392871 11.9148243564528 11.7086589777781 11.8882075210033 11.8372545491327 10.6377065121886 11.4773436366498 11.5922268282533 11.5738107913492 11.6431871239701 11.6071780701696 11.0695378766127 11.4886264712601 11.6820607388626 11.5789245338779 10.8589105054111 0.0752882499492183 0.0728059143789954 0.0730660342340245 0.0745071698947687 0.0740757757379574 0.0725207634213873 0.073085916943739 0.073468672958156 0.0808370611858733 0.0776007147645696 0.0767159718524436 0.0758027201651145 0.0725207634213873 0.0777930546710973 0.0776174338866699 0.0733717010029482 0.0774712913043091 0.0756391236791479 0.0746556737633751 4 4|0 +|/ 14920802 14922246 14921454.667 14920540 14922500 + gene protein_coding_gene FALSE TRUE AT4G30530.1 defense-related protein, putative similar to defense-related protein, putative [Arabidopsis thaliana] (TAIR:AT2G23960.1); similar to defense-related protein [Brassica carinata] (GB:AAK50344.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991) 0.31234454537512 4.2027893440856 0.00267818918874957 1 5.51669960368883 23.1088539790912 0.31234454537512 0.0445445863062665
AT2G42190_at 7.90168789188108 7.99352676698581 7.71244868000157 7.6585189980165 8.19277174327895 7.99696753629473 9.0875693070516 8.77667761968751 9.02170461227098 8.96714356446337 9.1607791459167 9.50848724896214 8.57445731655882 9.16857824927763 8.83802030011982 8.6297807628373 8.27398530737747 8.53298505620688 8.92822422040686 0.145507840777691 0.150025899020200 0.158070963630541 0.157201333967536 0.151061707496627 0.15529562579535 0.147563358933204 0.144206971974953 0.156395041889965 0.144206971974953 0.151239352940407 0.144611994615690 0.144363866092725 0.146891945190979 0.146061154869019 0.144206971974953 0.153569956667809 0.151405042733518 0.145577212349721 2 2 + 17590735 17591093 17590928.727 17589947 17591272 + gene protein_coding_gene FALSE TRUE AT2G42190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57930.2); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE85991.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.343080974655100 -4.20228505878222 0.00268009776769678 1 5.51606541685737 17.0691418874601 -0.343080974655100 0.0662000747562538
AT4G19830_at 6.04166942806928 6.61790536322903 6.00421398119172 6.10600570868833 6.70763488354318 6.23066233735256 7.8051766159652 7.96451752317373 7.94054790671813 7.72823088555251 7.7537452518456 7.67539049752224 7.56372366855273 8.04985247747134 7.5821444603993 8.10564971051368 6.98706710386088 7.80591578940448 7.74927356504078 0.184926327545213 0.160010851290244 0.172309202167434 0.167283757230141 0.167338059532425 0.175884931848324 0.160416495655752 0.169427471742382 0.165349831636091 0.161105936250662 0.160010851290244 0.162522617607533 0.164512388016614 0.172589285574088 0.174313689167053 0.160010851290244 0.180330389487010 0.163878015088057 0.164186812993489 4 4|0 -|/ 10772628 10773682 10773196.4 10772441 10774033 - gene protein_coding_gene FALSE TRUE AT4G19830.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT5G13410.1); similar to peptidylprolyl isomerase, FKBP-type family protein [Musa acuminata] (GB:ABF70026.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.480384668703111 -4.2021837113902 0.00268048151534086 1 5.51593795746892 14.4329500163433 -0.480384668703111 0.133521709843171
AT1G64970_at 9.15714150378288 9.50087383018952 9.85906918222714 10.1944251709303 9.53646911905877 9.37324651729854 10.5926730745732 10.6389638145484 8.59193195802793 9.72785410417806 8.01625143512353 7.87227147492461 9.11380787584189 8.8035377374464 7.54243042257504 9.08995761866538 9.41677504386204 8.87563183834637 9.05325948855873 0.193679558239391 0.192603635226452 0.198437155473901 0.198364685407297 0.192603635226452 0.196428951465652 0.194975602956577 0.192603635226452 0.216493240279535 0.198588474849501 0.205898847412097 0.201009277877505 0.192603635226452 0.193589594653627 0.201933039940702 0.192603635226452 0.199413042726986 0.198581565856078 0.197882117480197 1 1|0 -|/ 24138003 24138729 24138360.2 24137748 24139772 - gene protein_coding_gene FALSE TRUE AT1G64970.1 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves Identical to Tocopherol O-methyltransferase, chloroplast precursor (EC 2.1.1.95) (Gamma-tocopherol methyltransferase) (G-TMT) [Arabidopsis Thaliana] (GB:Q9ZSK1;GB:Q9XIP9); similar to phosphoethanolamine N-methyltransferase 3, putative (NMT3) [Arabidopsis thaliana] (TAIR:AT1G73600.1); similar to SMT2 (STEROL METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT1G20330.1); similar to gamma-tocopherol methyltransferase [Brassica oleracea] (GB:AAO13806.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.382313072234118 -4.20203358372342 0.00268105007579901 1 5.51574914633319 18.7144485004610 -0.382313072234118 0.0881390358156313
AT3G57330_at 8.84506834185893 8.88438601542528 8.89974695444153 8.87354435192336 8.79102954569982 8.41494215574585 8.04511792259396 7.86676777598081 8.0206774965939 7.70505564736582 8.41433464694998 8.49012957038874 7.75674091874578 8.1831813998453 7.95855805248599 8.17422612888486 7.92273525378882 7.8814891321066 7.45083908324795 0.173516927602875 0.17390064376377 0.179198585876722 0.174495793349486 0.174135248017356 0.185202883676158 0.166490342152289 0.166490342152289 0.198184492263031 0.175683304346973 0.176061011331427 0.175809735211986 0.187123003746236 0.18327351111612 0.172565362906963 0.169517282580746 0.183096030230528 0.178626469356134 0.183259093737524 3 3 - 21222656 21223265 21222897.273 21222435 21227353 - gene protein_coding_gene FALSE TRUE AT3G57330.1 calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) Identical to Putative calcium-transporting ATPase 11, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 11) (ACA11) [Arabidopsis Thaliana] (GB:Q9M2L4); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G41560.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17949.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL73984.1); similar to calmodulin-stimulated calcium-ATPase [Brassica oleracea] (GB:CAA68234.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.353315525075756 4.198693044219 0.00269373482978235 1 5.51154682580817 16.4891746147764 0.353315525075756 0.0724937854447902
AT1G27390_at 5.94156217527154 5.82183044064657 6.38062403938335 5.9915176137343 5.59845481683364 5.73040325687645 5.03783045933198 5.08063669451714 4.2125449840034 4.75707295873859 4.53784951178167 4.9124213938604 4.81203262394585 4.78031248604687 4.78288058834339 4.52876603643955 4.89757431265115 4.75391925683849 4.50712141598972 0.223604809738376 0.217552657183324 0.222596338026735 0.216512558911166 0.221261163517905 0.229216042346550 0.219881658303112 0.225127942639762 0.240882370579814 0.224638659053601 0.216512558911166 0.227088201331004 0.216512558911166 0.216512558911166 0.221206055889024 0.216512558911166 0.228683247684296 0.239237966119674 0.225090876406681 1 0|1 /|- 9513474 9514448 9513967.5 9513076 9514988 - gene protein_coding_gene FALSE TRUE AT1G27390.1 TOM20-2 (TRANSLOCASE OUTER MEMBRANE 20-2) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins Identical to Mitochondrial import receptor subunit TOM20-2 (Translocase of outer membrane 20 kDa subunit 2) (TOM20-2) [Arabidopsis Thaliana] (GB:P82873;GB:Q9FZJ6); similar to TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3), protein translocase [Arabidopsis thaliana] (TAIR:AT3G27080.1); similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) (GB:P92792); contains InterPro domain Plant specific mitochondrial import receptor subunit TOM20; (InterPro:IPR010547); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.356629031296492 4.1980991164673 0.0026959968365542 1 5.51079947371136 10.3193404266489 0.356629031296492 0.0744300571534173
AT4G37590_at 5.28250386089433 5.7252184759864 4.70168065249686 4.99676555743958 6.42967863278198 5.80333152478926 6.48470021410116 6.57993152682424 5.86483634178464 6.09498755533818 5.53725871649464 6.16586368664634 6.05012924006141 5.58033017683472 6.20138075473391 6.66582203465218 5.88002861320234 5.45520401024683 7.27683169415675 0.242527968804775 0.22439537206687 0.242652978453243 0.229168808680301 0.226557248195219 0.245703154713465 0.230017833401440 0.226751762287656 0.234843204119689 0.220330106485279 0.235901966056426 0.227306416077365 0.225462629449007 0.236622008263205 0.24433096106622 0.223036229808752 0.234539831959897 0.223395836953736 0.225475155540203 4 4 - 17663092 17663875 17663423.4 17662836 17666422 - gene protein_coding_gene FALSE TRUE AT4G37590.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT2G23050.1); similar to Os12g0583500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067147.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94544.1); similar to Os03g0609800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050649.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) -0.502720401946047 -4.19808633898603 0.00269604552268717 1 5.5107833948516 11.927586647932 -0.502720401946047 0.143170815927294
AT2G28320_at 6.24769702196814 6.05798801809255 6.26658755393817 6.17622624549423 6.0724971062315 5.82598927943436 7.21446766078811 6.77636346756977 6.32856755462027 6.55896560994508 6.38965433157015 6.30479886081566 6.30596295758937 6.47470121952422 5.53828977331894 6.61239841360231 6.17916675728627 5.70423599534189 6.57648912311917 0.192114008834346 0.194888116682592 0.194765934168488 0.199807416228108 0.192192284775936 0.192443318358284 0.198403144592944 0.190646571906838 0.209205205392126 0.190646571906838 0.194052145066003 0.198770949622488 0.197759737118543 0.192513347740642 0.203237168789915 0.193321783640628 0.191007801063207 0.220099412649802 0.195070808014734 2 2|0 +|/ 12105264 12106450 12105952.5 12101823 12106721 + gene protein_coding_gene FALSE TRUE AT2G28320.1 pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein similar to pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G54800.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK21344.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.394080193213574 -4.19802675886703 0.00269627255371673 1 5.51070842035652 12.6680562781192 -0.394080193213574 0.0942879668711848
AT1G05070_at 7.55435906679123 7.90212286445754 7.63654055729508 7.71024912900752 7.53809869830992 7.91023884048317 8.08563329715822 8.65687959374992 8.13893178834606 8.01592961787768 7.57345145896454 7.11119707049547 7.77304183924624 7.59201169025975 7.17870272057939 7.63895289977491 7.4276044974311 7.23828954155495 7.98885861321443 0.194254643109105 0.191005273095811 0.189505365446536 0.189505365446536 0.204104162354657 0.204426142773495 0.195880868310475 0.195887625211055 0.197449949450704 0.203269949241857 0.193652653168733 0.192831400199277 0.201592002750332 0.202834310107897 0.190566182512214 0.189505365446536 0.215235785700837 0.205774391358216 0.197425479641325 1 1|0 -|/ 1457200 1458499 1457958 1457062 1458742 - gene protein_coding_gene FALSE TRUE AT1G05070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32580.1); similar to unknown protein [Phytophthora sojae] (GB:AAO24648.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) -0.478608553811535 -4.19608772238106 0.00270367249190033 1 5.50826803383408 15.6190468248738 -0.478608553811535 0.133059032334286
AT1G72820_at 7.83346553664928 8.27136601641527 7.30870972801872 7.83734001161545 8.42641502039864 8.49013597766656 8.23337925580745 8.50120076042675 9.07131138916759 8.652360853757 8.1374976901722 8.13888284409678 7.82620801293856 8.09472316963938 8.06002708154445 8.43835271577743 8.36053996893903 8.40066006322466 9.0402543058311 0.169038780136576 0.160081950151739 0.176870583985615 0.16330982591369 0.162600222064043 0.169419110489615 0.163667454903294 0.160081950151739 0.167736858848522 0.161360630847052 0.169237279229434 0.171378617882418 0.161998749590851 0.170993432292292 0.169424630378646 0.164548653643967 0.174269810652917 0.164297489905256 0.167619122770388 1 1 + 27407588 27408112 27407839 27406540 27408335 + gene protein_coding_gene FALSE TRUE AT1G72820.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G26200.1); similar to Os09g0444700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063299.1); similar to Os03g0175200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049133.1); similar to mitochondrial carrier, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94258.1); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.466700057096757 -4.19453825713322 0.00270960137242305 1 5.50631747094381 16.6644616848132 -0.466700057096757 0.127989751226814
AT1G73870_at 8.61212491509399 8.44835561480021 9.39378140623171 9.32575468393779 9.37550116803379 9.50754574730373 10.0250174055147 10.0517900898702 10.3859998369252 10.7601620046710 9.8967818206587 9.79189727860925 10.0252007977041 9.94509202269587 9.50227039590278 10.1804200632677 10.0729937120813 10.0449596542398 10.8293643891605 0.142140881891384 0.141998235611154 0.127812494207143 0.131129291429643 0.129311544831338 0.126644215174939 0.125042783267313 0.128720587885056 0.122374327154101 0.12760025782063 0.127514799946403 0.127666606679510 0.124265239428416 0.130549548200705 0.13062531792997 0.127612906168366 0.127560891807909 0.124451327538328 0.133224997635107 1 1|0 +|/ 27783499 27784121 27783941.2 27782827 27784337 + gene protein_coding_gene FALSE TRUE AT1G73870.1 zinc finger (B-box type) family protein Identical to Zinc finger protein CONSTANS-LIKE 7 (COL7) [Arabidopsis Thaliana] (GB:Q9C9A9;GB:Q5XF76); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT1G25440.1); similar to zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD54363.1); similar to Os03g0711100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051053.1); similar to Os06g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057333.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.304866515191822 -4.19333051602251 0.00271423235096985 1 5.50479679982223 19.6379642347135 -0.304866515191822 0.038541323581125
AT1G53590_at 6.97376161092048 6.9799517897755 6.65729096326344 6.60904643105079 7.48427706444608 7.03507191980309 6.37155911485547 6.60489296410416 6.21034043151141 6.59546310963237 7.30781985042596 7.33700771596076 6.79549061876596 7.78873599143227 6.7569867587705 6.96414752962582 6.46474848418135 6.52392190167237 6.52632237528401 0.237800356643883 0.236616133151634 0.242267246954511 0.226148185588687 0.231003239186918 0.238394166123487 0.234733115505357 0.236723902534117 0.247603528711400 0.242712644469787 0.226148185588687 0.228469727502676 0.231881483142335 0.231185245030446 0.231630354956182 0.230773231255214 0.237616688699392 0.24627776612262 0.241233498107145 1 1 + 20003220 20003703 20003500 19999983 20003933 + gene protein_coding_gene FALSE TRUE AT1G53590.1 C2 domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14590.1); similar to Os02g0313700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046658.1); similar to Os01g0242600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042557.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81628.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.381097804469360 4.19158136992195 0.00272095435953888 1 5.50259399071057 13.5576811465259 0.381097804469360 0.0880023038344943
AT3G08710_at 8.41337663631549 8.84554528729442 8.82859004765654 8.84807285771168 9.36718092623257 8.8066319267723 8.51851707146906 8.37699348308046 7.9842365674001 7.42604180979072 8.15510696229382 8.34631791059878 8.29514743218263 8.30097546039894 7.68029027994773 8.27983934212239 7.93816050123779 7.94940432944435 7.46220458781115 0.18221988103048 0.185770267868461 0.181158480051566 0.186589527714702 0.1809560513212 0.178588243285746 0.178559886840786 0.182555719465829 0.197283569152663 0.184581540337619 0.179317910388804 0.179233512041449 0.183581188691779 0.188874663073412 0.188128236467134 0.183523846571759 0.205501330444158 0.179388132199495 0.186603397552631 3 0|3 /|+ 2645738 2646278 2645958.5 2645173 2646503 + gene protein_coding_gene FALSE TRUE AT3G08710.1|AT3G08710.2 ATH9 (thioredoxin H-type 9); thiol-disulfide exchange intermediate|ATH9 (thioredoxin H-type 9) similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G40790.1); similar to thioredoxin h-like protein [Nicotiana tabacum] (GB:AAN63619.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.459002554498864 4.18757507659638 0.00273641802532929 1 5.49754659581188 16.6217716623727 0.459002554498864 0.124958581063857
AT4G33030_at 9.36616330932193 9.74723015721342 8.72682091310596 9.03011887801802 9.19181162525408 8.7199600794978 9.12330197915225 9.57780808040337 9.50126628914795 9.51369883075908 8.82614171591334 9.2134494358281 9.00253048245558 9.18684633094172 9.38481753194608 9.2220973031458 8.19524501709091 8.94571032869601 9.34797518102826 0.146141147879873 0.143369239133190 0.150761790611562 0.145912128272011 0.146851013432951 0.149427744653381 0.149227649013121 0.145915408871173 0.156415919462431 0.141313627157454 0.148543960169837 0.144363939692715 0.146908841020955 0.142039112713321 0.145913774621526 0.143247463718589 0.167183752763334 0.152289438825749 0.146825235026390 4 4 + 15936910 15937508 15937240.273 15935419 15937810 + gene protein_coding_gene FALSE TRUE AT4G33030.1 SQD1 (sulfoquinovosyldiacylglycerol 1); UDPsulfoquinovose synthase involved in sulfolipid biosynthesis Identical to UDP-sulfoquinovose synthase, chloroplast precursor (EC 3.13.1.1) (Sulfite:UDP-glucose sulfotransferase) (Sulfolipid biosynthesis protein) (SQD1) [Arabidopsis Thaliana] (GB:O48917); similar to Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose (GB:1I2B); similar to Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose (GB:1QRR); similar to Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose (GB:1I24); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.496828336473335 -4.18658973827416 0.00274023570352546 1 5.49630477048985 18.4111109786945 -0.496828336473335 0.141272533849431
AT3G60690_at 9.19713461641232 9.6688047497456 9.97698888340912 10.0121670395055 10.4187489681914 9.74708129751284 9.77487680444188 9.6912215239335 7.91515812789639 8.59830874019524 8.56340859481 7.69801009855144 8.99223872458068 8.92473477250713 7.48865135024724 9.42201196049893 9.32164397889174 8.44005746688653 7.67096652426795 0.147871682207874 0.150883182375362 0.150146652075607 0.152749026900843 0.152045788098416 0.15659857164827 0.152357687381948 0.150499837230460 0.178607353738309 0.147926431553772 0.147871682207874 0.149404821414690 0.149963885924191 0.151064763848247 0.163004823211207 0.150495807107797 0.149216911377926 0.164639004215507 0.158622093870229 3 3 + 22446312 22446714 22446493.545 22446096 22446924 + gene protein_coding_gene FALSE TRUE AT3G60690.1 auxin-responsive family protein similar to auxin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G45210.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); similar to Os04g0537100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053425.1); similar to OSJNBa0091D06.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03018.3); contains InterPro domain Annexin; (InterPro:IPR001464); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.500301972219947 4.18331367857479 0.00275296987562300 1 5.49217471947487 18.1447891933065 0.500301972219947 0.142898088467571
AT3G53020_at 10.6616981912184 10.7514061218058 10.3522872103311 10.4190728252141 10.2606577694886 10.0794853991671 10.6974961111327 10.7054946540016 10.0656558970258 10.0890382830793 9.84413964494405 10.1315413382626 9.7391411861965 9.63887712893486 10.4056658275546 9.7354548977383 9.6021154859648 9.75405605624684 9.95031889711042 0.0853567859867207 0.082413185415013 0.0831149795132304 0.0859262481948526 0.085300374117141 0.0978910412687353 0.083368899104492 0.0836678776991436 0.0921904188068994 0.082803029191201 0.0827816660037112 0.0831807560549528 0.0819361325154589 0.0897906713495027 0.0833853122483695 0.084959968401537 0.0837332889037539 0.0919235838415643 0.0838431363804551 3 3 - 19671752 19672477 19672094.091 19671495 19673003 - gene protein_coding_gene FALSE TRUE AT3G53020.1 STV1 (SHORT VALVE1); structural constituent of ribosome RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20. Identical to 60S ribosomal protein L24-2 (Protein SHORT VALVE 1) (RPL24B) [Arabidopsis Thaliana] (GB:P38666;GB:Q33DV0;GB:Q56Z81;GB:Q9LF90); similar to RPL24A (RIBOSOMAL PROTEIN L24), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G36620.1); similar to TRASH [Medicago truncatula] (GB:ABE80118.1); contains InterPro domain TRASH; (InterPro:IPR011017); contains InterPro domain Ribosomal protein L24E; (InterPro:IPR000988) -0.302389190915453 -4.18305628756461 0.00275397305041398 1 5.49185015315146 20.436638937696 -0.302389190915453 0.0368712995900193
AT2G32600_at 7.28932164590615 7.43820108558596 7.08162125340836 7.64053333339894 7.70582891834861 7.81016407311865 6.4875574729783 6.54284950168443 5.15115965105349 5.39063056690095 5.66488015975378 5.18305468198966 5.79254930800556 5.2813839054232 5.30578370440599 5.70096424818669 5.78243981462698 5.05633384288931 5.27869970810748 0.282045941494868 0.278366892058665 0.289026763652666 0.283811956880744 0.278480166952529 0.287838725874561 0.288348065413849 0.288624607067909 0.286485610454605 0.290395361964363 0.283674616720054 0.286243443319130 0.286618934248866 0.286399480534130 0.289557775925688 0.281671300840372 0.279810569639308 0.302364232843546 0.283650877201330 2 2|0 -|/ 13840870 13842060 13841351.9 13840622 13842740 - gene protein_coding_gene FALSE TRUE AT2G32600.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G61080.1); similar to Os03g0263500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049634.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06858.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690) 0.408740767084715 4.18292524764985 0.00275448392569759 1 5.49168490927129 12.6217198356441 0.408740767084715 0.102159553865946
AT1G65500_at 8.37049056669405 8.94909932915454 6.88710829960383 6.99268068849744 7.29582032384048 6.99104129557991 3.4239347635748 3.64330588163179 3.68840710603238 3.01402335463251 2.86555983350136 3.51008060055037 2.67862985819098 3.06946031079856 3.36435349311455 3.69503255439965 2.58726340684317 3.42443481522329 2.88678688200143 0.405331414680436 0.41072001300872 0.397785660091306 0.400019760804495 0.40201060567258 0.394835305669471 0.377925729136623 0.383503708324132 0.379810020964874 0.377925729136623 0.379286283560012 0.377925729136623 0.382141077932635 0.377925729136623 0.377925729136623 0.377925729136623 0.384190452741116 0.381869074319279 0.377925729136623 1 1|0 +|/ 24361558 24362005 24361805 24361530 24362279 + gene protein_coding_gene FALSE TRUE AT1G65500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65490.1) 0.448950547402794 4.18226760413086 0.00275704936573983 1 5.49085556264496 9.74206396355536 0.448950547402794 0.120760363245495
AT1G24440_at 8.69390160484802 8.81871550078681 8.98230784396812 9.02838555112306 9.5052166657506 8.98649074886356 8.29589818886046 8.27198217307531 7.53937205282207 7.46177331439706 7.29899492793324 7.45641636172481 8.1712253603082 7.72207516389656 7.1678249205196 7.89106110374703 8.04266616744126 7.78496555669733 7.55402558044826 0.220032551283989 0.219443446484804 0.225448503587778 0.228401021236746 0.221232952778709 0.233625267706171 0.223742929333212 0.215604551380195 0.236166367973858 0.223560995150452 0.224826841204475 0.220267334783775 0.216472526376563 0.238519340757253 0.225005363099979 0.218307500293169 0.236217267914347 0.237310962545192 0.223475593135800 1 1|0 +|/ 8662980 8663731 8663403.8 8662007 8663952 + gene protein_coding_gene FALSE TRUE AT1G24440.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G13195.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE84624.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.38949460746403 4.18146845478839 0.00276017026380556 1 5.48984766285086 16.4280092902458 0.38949460746403 0.0927660516256874
AT3G15540_at 4.78627360979865 4.53688526640778 4.34297611699437 4.44987385996347 5.64333849684868 5.37684209451401 4.29983957885685 3.79444585506840 7.36300887997337 4.98824468623753 7.27085875455717 7.26058202749564 6.39186195901877 6.55109361981824 7.90582453166402 5.95554317338344 5.11289993271885 6.34203449190888 6.69936828116724 0.284156455088665 0.265988376728071 0.276134912980589 0.266840719701615 0.262147910142584 0.261007141534977 0.276697375973698 0.276640685433027 0.269270397566088 0.262225499786858 0.271825151418605 0.267513691114952 0.259575497163991 0.275703586223020 0.277644005354827 0.259575497163991 0.269565884884864 0.261068094303951 0.276488402742929 3 3|0 +|/ 5264144 5265338 5264520.778 5264031 5265685 + gene protein_coding_gene FALSE TRUE AT3G15540.1 IAA19 (indoleacetic acid-induced protein 19); transcription factor IAA induced protein 19 Identical to Auxin-responsive protein IAA19 (Indoleacetic acid-induced protein 19) (MASSUGU2 protein) (IAA19) [Arabidopsis Thaliana] (GB:O24409;GB:Q8L8X3;GB:Q9LDL6); similar to IAA6 (indoleacetic acid-induced protein 6), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52830.1); similar to Auxin-induced protein AUX22 (GB:P13088); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.42376329670423 4.17869652885472 0.00277102479511574 1 5.4863508005166 11.1283316566965 0.42376329670423 0.109458247490671
AT1G44835_at 6.20687788480376 6.04504173644517 5.11910258283212 4.95070054866195 5.41075765875464 5.25369648510082 6.19807133042505 5.87694946556233 4.96779430283428 5.28365328729812 5.3619363502081 5.7532409487807 5.06358616177435 5.4741983827797 6.26513040293717 4.98272040661872 5.44111051512872 5.18736248100393 5.50137020888204 0.249003754817184 0.235488062959858 0.242563875737377 0.244580930222771 0.240329551353506 0.253601479803366 0.245569283796880 0.241066699331121 0.256802423870987 0.236090989521046 0.243492969945672 0.242059719395253 0.24192671060829 0.243874153668166 0.250278401167082 0.235488062959858 0.247439417202240 0.249897512386717 0.239776748963323 1 1|0 +|/ 16944112 16944753 16944386.25 16942241 16944964 + gene protein_coding_gene FALSE TRUE AT1G44835.1|AT1G44835.2 YbaK/prolyl-tRNA synthetase family protein similar to 25.7 kDa protein [Cicer arietinum] (GB:CAB81546.1); similar to Os02g0767700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048233.1); contains InterPro domain YbaK/prolyl-tRNA synthetase associated region; (InterPro:IPR007214) -0.35397467282796 -4.17778517240691 0.00277460355130718 1 5.48520080535681 10.9786996978193 -0.35397467282796 0.073896093937354
AT1G77060_at 5.51406110793207 5.8255556770656 3.03437080271481 3.60611863118256 5.3875560528262 4.80497496749695 6.07429599280606 5.54309059580408 5.20368956994219 6.14558038471831 6.24996149990917 6.34449577879993 5.56123333679133 6.11483853334662 6.85526296214733 6.12320829734581 6.32804517102541 6.0593425155969 6.17003747354987 0.224410320818984 0.209603805378911 0.223501154221149 0.221362981700552 0.210025858961777 0.215329133947306 0.205784091745039 0.207547531957577 0.21874679723778 0.207890026647363 0.219474250892829 0.214148498061779 0.213878332632582 0.210066425056350 0.209793025169505 0.210244465683264 0.223663092770231 0.211746089910611 0.215216546677074 1 0|1 /|- 28956707 28957229 28956948.5 28956579 28958403 - gene protein_coding_gene FALSE TRUE AT1G77060.1 mutase family protein Identical to Putative carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) (Carboxyphosphonoenolpyruvate phosphonomutase) (CPEP phosphonomutase) [Arabidopsis Thaliana] (GB:O49290); similar to mutase family protein [Arabidopsis thaliana] (TAIR:AT1G21440.1); similar to Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96021.1); contains InterPro domain Isocitrate lyase and phosphorylmutase; (InterPro:IPR000918); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.583108180356651 -4.1768549470332 0.00277826151525209 1 5.48402685072858 10.9959118057821 -0.583108180356651 0.176948232178964
AT1G23820_at 9.4746185950955 9.51838293673335 9.46181498448748 9.46865678354506 9.6818292775003 9.5589962199298 9.38276732619167 9.31247463118083 8.35335876308024 8.97767772821816 8.94312021455509 9.09180807595399 8.89685505622896 9.02722866056996 9.21698094477404 9.14030422497942 9.13684773995966 8.9976471788988 8.44796629684813 0.127794392355675 0.131048322125918 0.131758844658987 0.133438314712902 0.128570609990269 0.136061708140253 0.125073571246996 0.127403220824269 0.142400408207975 0.139551577144980 0.131890343928630 0.129517600416048 0.125616911850673 0.141814397501338 0.125632316594336 0.130226868912225 0.133056847857644 0.133268735968412 0.136239361267709 1 0|1 /|+ 8421853 8422649 8422303.667 8420254 8422974 + gene protein_coding_gene FALSE TRUE AT1G23820.1|AT1G23820.2 SPDS1 (SPERMIDINE SYNTHASE 1) Spermidine synthase. Identical to Spermidine synthase 1 (EC 2.5.1.16) (Putrescine aminopropyltransferase 1) (SPDSY 1) (SPDSYN1) [Arabidopsis Thaliana] (GB:Q9ZUB3); similar to SPDS2 (SPERMIDINE SYNTHASE 2) [Arabidopsis thaliana] (TAIR:AT1G70310.1); similar to spermidine synthase [Malus x domestica] (GB:BAC20171.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Spermine synthase; (InterPro:IPR001045) 0.292055763336566 4.17567182721306 0.00278292142042905 1 5.48253352205258 18.3071175650191 0.292055763336566 0.0256629918770585
AT2G02220_at 6.5943379240554 6.84465832582075 5.84629860228431 6.22185138795076 6.78473045879185 6.49962535043209 4.27467578718594 5.06921824012813 5.29867437015814 4.29075412871654 5.39443661567032 5.10069950507962 4.87590037755467 5.90893461902487 4.60204990294272 5.04523692326233 5.22928427464131 5.22506500529834 4.52822930402072 0.220770706735749 0.218739072144331 0.225341641485515 0.226150327931587 0.218739072144331 0.228195973144025 0.220971247083863 0.225072705258671 0.224926637803368 0.231860738130811 0.221321973897931 0.223848718450076 0.219601812416077 0.224937589266342 0.218739072144331 0.222738094578431 0.231893512608139 0.232296085823377 0.228416124478069 2 2 - 584394 584940 584642.636 583977 587123 - gene protein_coding_gene FALSE TRUE AT2G02220.1 ATPSKR1 (PHYTOSULFOKIN RECEPTOR 1); ATP binding / peptide receptor/ protein serine/threonine kinase Encodes a protein interacting with phytosulfokine, a five amino acid sulfated peptide (YIYTQ). Identical to Putative phytosulfokine receptor precursor (EC 2.7.11.1) (Phytosulfokine LRR receptor kinase) (PSKR) [Arabidopsis Thaliana] (GB:Q9ZVR7;GB:Q8S8L2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G72300.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G53890.1); similar to putative phytosulfokine receptor precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD23737.1); similar to Phytosulfokine receptor precursor (Phytosulfokine LRR receptor kinase) (GB:Q8LPB4); similar to H0322F07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67764.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.554609424601504 4.17501835039316 0.00278549883539084 1 5.48170860160386 10.9562179281975 0.554609424601504 0.165652533506015
AT3G07890_at 6.85350377667253 6.71182514247644 6.1544557473515 6.40946020357629 7.15953047136447 6.44411081037593 6.47775769292832 6.14613645976547 4.82765269269614 4.68361242633955 5.43461535781056 5.975756096846 5.8666102829347 6.12139269199347 5.84259214801484 6.01297658982283 6.09228803077952 5.21807305013193 4.90192124906617 0.239216830592828 0.228357830428585 0.23931430083296 0.235988518359306 0.235783249294973 0.229764533731971 0.236726393024989 0.235596728056552 0.237916353004525 0.230467029121614 0.229757133616897 0.228357830428585 0.228544444176288 0.243695529934560 0.228556748678172 0.229723598227584 0.231679738707505 0.235450555171143 0.233472566257833 3 3|0 -|/ 2516889 2517547 2517182.667 2516310 2519381 - gene protein_coding_gene FALSE TRUE AT3G07890.1|AT3G07890.2 RabGAP/TBC domain-containing protein|RAB GTPase activator similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39280.1); similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G55020.1); similar to hypothetical protein DDBDRAFT_0202560 [Dictyostelium discoideum AX4] (GB:XP_643668.1); similar to Os08g0337700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061581.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.505363057607066 4.17382107307148 0.00279022772883384 1 5.48019701770878 11.8570642816017 0.505363057607066 0.145499565788113
AT2G17650_at 4.49408530385296 4.59985832236046 4.59116716148630 4.59319889279618 5.31551524648658 5.57267155300728 6.27499652373436 6.07137128721977 5.51407817477187 5.61611363568773 5.22114567606381 4.98892771064714 5.36906595012564 5.49187238175477 4.91653718910685 5.42496408461104 5.58252956563952 5.37406280442684 5.71560020351239 0.227164833834746 0.223366705334406 0.230823386187066 0.235406455492668 0.222389127850156 0.232928125345448 0.232445063238992 0.229660669164354 0.229773142483836 0.228050804220203 0.222016101310696 0.221781670983195 0.228697517476747 0.228233980469557 0.224662566805956 0.222032829326434 0.230028437624159 0.221781670983195 0.237928411258228 2 2 + 7679463 7679925 7679721.182 7678098 7680118 + gene protein_coding_gene FALSE TRUE AT2G17650.1 AMP-dependent synthetase and ligase family protein similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G20560.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05508.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); similar to Os03g0133500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048876.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.330532740104091 -4.17347269931698 0.00279160531919010 1 5.47975714262072 10.6448091238451 -0.330532740104091 0.0596435509338372
AT1G54490_at 7.47277029096947 7.50895633512921 7.98797255508427 7.82785773939636 8.03852374503588 7.8227883138837 7.55162546647515 7.63438727033343 7.44054261233637 7.02424399133856 7.73933140158033 7.18556955016755 7.46314542022089 7.74797938319336 7.17475134126633 7.70881347744223 7.57352472426773 7.33946158520858 7.24753213765086 0.151400577510933 0.15038741505903 0.156162321597109 0.147835775726953 0.147074766537047 0.152870853034531 0.149244047773009 0.148244004895331 0.150036005123457 0.155918706466337 0.147626594647956 0.148668440156773 0.151763010399521 0.148796792907550 0.159642675204528 0.146037859014305 0.150857299934859 0.158701858497161 0.147965174644852 1 1 + 20359723 20360164 20359945.818 20353858 20360583 + gene protein_coding_gene FALSE TRUE AT1G54490.1 AIN1 (ACC INSENSITIVE 1); 5'-3' exonuclease/ nucleic acid binding Involved in the ethylene response. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to 5'-3' exoribonuclease, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99327.1); similar to 5'-3' exoribonuclease, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99328.1); similar to PREDICTED: similar to Y48B6A.3 isoform 10 [Canis familiaris] (GB:XP_856061.1); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.31574163879984 4.17330149941427 0.00279228257010866 1 5.47954096881964 15.0951160599686 0.31574163879984 0.0490503827635024
AT1G68790_at 7.82106970803264 7.77868355087594 7.5045813178257 7.52086779832247 8.09145701316232 7.87744693078032 8.17667079789963 7.93082353665425 8.10229209626637 8.06845458703067 7.87794767810696 7.79745302589273 7.63300625780342 7.82129274944957 7.53930727927041 7.98768550855177 7.23536892539118 7.6136976528983 8.31803799546647 0.153030601235466 0.151042592515707 0.158988253367444 0.159885010995630 0.154519132788104 0.157296914008034 0.155326378880528 0.151042592515707 0.161195765175705 0.161603129785839 0.164849963677570 0.151325428774414 0.156242270554093 0.152984567074269 0.155577800901089 0.151042592515707 0.164579594144034 0.155898021991938 0.151042592515707 1 1 - 25838595 25839382 25839107.182 25838372 25842982 - gene protein_coding_gene FALSE TRUE AT1G68790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67230.1); similar to nuclear matrix constituent protein-related [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] (GB:BAA20407.1) -0.326465987463436 -4.17214125485111 0.00279687703570433 1 5.47807579524469 15.7632741371567 -0.326465987463436 0.0569512952179244
AT1G26620_at 4.31234178007553 4.69315465577729 5.06430013167822 4.84007054139485 5.35733509334494 5.31942840616971 4.2727158903345 4.47782838927849 5.12284107002163 4.44593575778867 4.64775684120519 4.9781054581459 4.62488660129506 4.84765737711443 4.37578125630162 4.97605348624797 4.96674706729925 4.38990078648142 4.49123995543741 0.205208524283406 0.204516370059356 0.209939181088693 0.212090908331304 0.204133512781185 0.214939338511764 0.207931604623267 0.208814876529086 0.217532090852533 0.205194724684504 0.207379391533780 0.204133512781185 0.206522521618814 0.211012060099465 0.204133512781185 0.205368824573140 0.222722913579534 0.206661842456130 0.204133512781185 1 1 - 9195858 9196342 9196099.727 9195825 9199656 - gene protein_coding_gene FALSE TRUE AT1G26620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69360.1); similar to Os03g0758600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051334.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK16179.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98981.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) 0.372731106229632 4.17139252182245 0.00279984625541459 1 5.47713015956465 9.49841354617865 0.372731106229632 0.084567869233449
AT3G29360_at 8.70994597297143 8.576317433757 8.33398660257748 8.43493458041302 8.05538125641317 7.92173472432507 8.66554440767267 8.9815891631624 8.00655233300964 7.8882041372735 9.27168370280829 9.52169733842874 8.94418808458403 9.07404253510762 9.67519119861915 8.87004635999586 8.60823647016511 8.61570699017543 7.64088216929516 0.138151994395848 0.139621105793482 0.146354049502297 0.146969958657251 0.138101571262438 0.146237406239774 0.143077727490455 0.147390396643757 0.165535897174397 0.148394294103303 0.140222000275576 0.142885938192663 0.141792068442496 0.142769295600445 0.151935272060949 0.137690629488825 0.137740067388432 0.147420312859146 0.147238413285027 3 3 - 11268787 11269176 11268972.909 11268328 11270466 - gene protein_coding_gene FALSE TRUE AT3G29360.1|AT3G29360.2 UDP-glucose 6-dehydrogenase, putative|UDP-glucose 6-dehydrogenase similar to ATUGD1/UGD1 (UDP-glucose dehydrogenase 1), UDP-glucose 6-dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G26570.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G39320.1); similar to UDP-glucose 6-dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G15490.1); similar to UDP-glucose 6-dehydrogenase (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH) (GB:Q96558); similar to UDP-glucose dehydrogenase [Cinnamomum osmophloeum] (GB:AAR84297.1); similar to putative UDP-glucose dehydrogenase 1 [Nicotiana tabacum] (GB:AAT40105.1); contains InterPro domain UDP-glucose/GDP-mannose dehydrogenase; (InterPro:IPR001732); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) 0.340273125833702 4.17031586729365 0.00280412182640616 1 5.47577019363529 16.918835250084 0.340273125833702 0.0660771483864949
AT4G31390_at 7.48741110987163 7.65185052025404 7.39161507163687 7.6759959790118 7.34814340851559 6.47538243094673 8.97891661574693 8.58747372044592 6.88154525140107 6.84203249099775 6.3833354812158 6.83881753126032 6.6023871632497 6.83411373153975 5.92169899715891 7.60087927609492 6.62983116728461 6.24481389808137 6.77508143938781 0.272123408398921 0.280147741544725 0.282629281897279 0.272997788513699 0.270126600264414 0.279366339181093 0.297206060868971 0.288175259047705 0.295775851644632 0.276588272431402 0.274506480878586 0.271227152557958 0.277180955676703 0.274896452663436 0.282895342812651 0.270126600264414 0.278745554942206 0.28103006737248 0.283929681654048 4 4 + 15235037 15236766 15235641.4 15233080 15237115 + gene protein_coding_gene FALSE TRUE AT4G31390.1|AT4G31390.2 ABC1 family protein|ATP binding / protein kinase similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to Os11g0216300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067509.1); similar to ABC1 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92061.1); similar to Predicted unusual protein kinase (ISS) [Ostreococcus tauri] (GB:CAL50461.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.577265253622545 -4.16970594554461 0.00280654703137380 1 5.4749996869786 14.4320341318860 -0.577265253622545 0.175020824436360
AT4G26940_at 7.80862995606692 7.93659825235512 8.19846921500175 8.40677664110553 7.91421267920062 7.52888248201211 8.69995839868668 8.4937329172773 8.02207896556673 7.19379972364106 8.81510023700426 8.90211059175244 8.05779036502261 8.47406029256332 8.83726729969761 8.47512801591946 7.84418149676941 8.68360376876486 7.39071730655428 0.184093568864822 0.18248569252221 0.198604045970568 0.187888477711135 0.184409302632264 0.205172523950639 0.182771471230276 0.187362301566080 0.194773769659268 0.196131058597999 0.180659497595945 0.178408659261894 0.184090206227376 0.187688362284801 0.191296592262706 0.181485063557039 0.199247163372718 0.184567867853537 0.192240563779715 4 4 - 13529927 13530843 13530356.909 13529431 13532705 - gene protein_coding_gene FALSE TRUE AT4G26940.1|AT4G26940.2 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659)|similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G05170.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.376489316541444 4.16911291270762 0.0028089072384038 1 5.47425045360827 16.1467511962253 0.376489316541444 0.0866615491488386
AT4G03030_at 8.23554063873725 8.4668507827141 8.6652303633543 8.79626173145536 8.7158742529778 8.49831835613545 7.91971725299203 7.92539375762658 8.51152268020318 8.70161833375468 8.98343554979884 8.65971274432004 8.89554680766058 8.91766307243239 8.3144975628424 8.97359845597313 8.7751566179814 8.63417416513087 8.71239193441403 0.109066793142777 0.109096696045729 0.111956325204141 0.108334574587714 0.112311361830072 0.111950925970652 0.116912472018220 0.116131809019824 0.119749673381034 0.107951087985879 0.108630722540369 0.112188251379239 0.109979739434993 0.112547219355318 0.111543621533646 0.107572919282339 0.114706368738228 0.112369308450083 0.109878890874109 4 4 - 1335951 1336507 1336199.636 1335729 1337368 - gene protein_coding_gene FALSE TRUE AT4G03030.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT3G63220.2); similar to OR23peptide (GB:AAA79706.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.329712186928368 4.16665809645432 0.00281869980688048 1 5.47114840367999 17.1084321110698 0.329712186928368 0.0594553955823715
AT1G79050_at 7.61128690507109 8.2259360346544 7.80914817648192 7.93589272224879 8.08492218296451 7.40003761961718 8.18182202795812 8.03583670310993 7.78951150232991 8.15818347430843 7.14438203628404 6.92396099274245 7.33606544591153 7.15951712996971 6.98283022669022 7.8952936868585 7.35789173320281 7.0225326038721 8.39430485636395 0.205275986554051 0.204139540958917 0.209133786626193 0.200869762373509 0.201279413492582 0.214243876396050 0.201146430532919 0.206490624303350 0.225472641740629 0.199422931694988 0.207041952530790 0.199422931694988 0.199422931694988 0.231061278648833 0.212426201680831 0.199422931694988 0.219425852378717 0.22608551682937 0.203184095137071 1 1|0 -|/ 29741979 29743112 29742452.6 29741852 29745072 - gene protein_coding_gene FALSE TRUE AT1G79050.1|AT1G79050.2 DNA repair protein recA Identical to DNA repair protein recA homolog 1, chloroplast precursor (Recombinase A homolog 1) (RECA) [Arabidopsis Thaliana] (GB:Q39199;GB:Q39200); similar to recA family protein [Arabidopsis thaliana] (TAIR:AT2G19490.1); similar to replicase (GB:AAA32855.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain RecA; (InterPro:IPR013765) -0.546205477381481 -4.16606025252243 0.00282109021985568 1 5.47039277375402 15.581514884651 -0.546205477381481 0.162729946236817
AT2G27260_at 7.4933620276944 7.70963840321 7.61138579422405 7.8866472545179 7.96378159397913 7.94311710680871 7.35398123620106 7.59602359556088 6.3923866177026 6.13993334594865 6.61003646336718 6.6230441854552 6.79631337166409 6.90531130540646 5.94367897843694 6.70424370910291 6.80806902850277 6.54241147190155 6.14044483712523 0.216778182496495 0.213968489250854 0.218818836235 0.217776965414632 0.215093654469787 0.222387825831817 0.217046895013647 0.216289847966537 0.227370320810538 0.221761560497069 0.213547685672207 0.215981246421720 0.217995049071943 0.213722942665765 0.224409842694909 0.213547685672207 0.232628169436907 0.220382451783773 0.218928363602228 2 2 + 11677096 11677505 11677259.273 11676733 11677722 + gene protein_coding_gene FALSE TRUE AT2G27260.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G52460.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABD32758.1); similar to Os11g0157300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065800.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.352682626176669 4.16577212983972 0.00282224302271870 1 5.47002858600691 14.1151888754354 0.352682626176669 0.0737375072251497
AT1G09780_at 9.97995035480261 10.0103181957449 9.56474872192923 9.52489052365626 9.38481945951468 9.22022784530444 10.0763433602911 10.0092249991102 9.73890515994982 9.69136322153486 9.765061094786 10.1103400803788 9.32568186650766 9.70186079366744 9.85903888891379 9.43210732699634 9.09463639385875 9.60921412800557 9.39891077729595 0.0968412143730867 0.0988669468946974 0.104257354393732 0.100260493014100 0.104382017900641 0.109342074431127 0.101122944072623 0.0994034175462187 0.106083699200892 0.0990929269684012 0.0973023235742368 0.0984616919894056 0.0995558714704967 0.106718125801055 0.0986159530222442 0.0979772335650213 0.105184943404477 0.102091542364439 0.0979626298482175 1 1|0 -|/ 3165559 3166386 3165849.8 3165372 3167871 - gene protein_coding_gene FALSE TRUE AT1G09780.1 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative Identical to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1 (EC 5.4.2.1) (Phosphoglyceromutase 1) (BPG-independent PGAM 1) (PGAM-I 1) (PGM1) [Arabidopsis Thaliana] (GB:O04499;GB:Q8LD62); similar to 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative [Arabidopsis thaliana] (TAIR:AT3G08590.2); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:P35493); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:Q42908); similar to apgm [Malus x domestica] (GB:CAA06215.1); contains InterPro domain BPG-independent PGAM, N-terminal; (InterPro:IPR011258); contains InterPro domain Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; (InterPro:IPR005995); contains InterPro domain Metalloenzyme; (InterPro:IPR006124) -0.296385702253491 -4.16466770463401 0.00282666660102786 1 5.46863245580116 19.3322999114939 -0.296385702253491 0.0319594791259026
AT1G63660_at 6.8004346492004 7.07023521033891 6.59761221497902 6.82636871737575 6.39230151830833 6.72831542270482 6.93815056833623 7.3434209639268 5.13688938055135 5.62947042373152 4.41063965102047 4.92893384969093 4.94982885207337 4.78060205032849 5.50092859850462 5.63942055528387 5.8797730762739 5.09518866930898 6.00967164593187 0.242123150092429 0.242261663032908 0.240622642315241 0.241394700941458 0.241529137259767 0.240305174845611 0.241724896761815 0.251258381096965 0.243490198973739 0.240190795375774 0.246536235897366 0.244711333742985 0.241366243415961 0.246804329573284 0.242344906327154 0.240981373899899 0.247225691724165 0.250906879558138 0.24007395439861 1 1|0 -|/ 23607808 23608979 23608570.8 23607598 23610938 - gene protein_coding_gene FALSE TRUE AT1G63660.1|AT1G63660.2 GMP synthase (glutamine-hydrolyzing), putative / glutamine amidotransferase, putative similar to GMP synthase (ISS) [Ostreococcus tauri] (GB:CAL58135.1); similar to Os08g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061552.1); similar to GMP synthetase [Chlamydomonas reinhardtii] (GB:AAO45104.1); contains InterPro domain tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; (InterPro:IPR004506); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain GMP synthase, C-terminal; (InterPro:IPR001674); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain GMP synthase, N-terminal; (InterPro:IPR004739)|similar to GMP synthase (ISS) [Ostreococcus tauri] (GB:CAL58135.1); similar to Os08g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061552.1); contains InterPro domain tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; (InterPro:IPR004506); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain GMP synthase, N-terminal; (InterPro:IPR004739) -0.422878475101473 -4.16360588267722 0.00283092654972157 1 5.46728998076333 12.2071923562540 -0.422878475101473 0.109759682483834
AT1G26880_at 9.94820851754543 10.1239155144501 9.73716507930131 9.93750951278186 9.62370324435518 9.43884815245882 10.3025105783006 10.5011017781644 9.67010906614465 9.78610544928682 9.75893503142039 10.162429448981 9.58324689972428 9.38924087429342 10.2081770613611 9.35321192444425 8.77491065465396 9.42995664903131 9.7226787228362 0.119507684424536 0.114901545342402 0.118413298587999 0.122743923276607 0.112788578598631 0.123317841528244 0.119164597187103 0.115455730584943 0.140865534380850 0.113594028266145 0.116573094395033 0.112788578598631 0.112788578598631 0.137972047642378 0.117067769951348 0.118875718663016 0.138713006832978 0.126747594961176 0.118799939550010 1 1|0 -|/ 9315630 9316599 9316026.125 9315370 9316716 - gene protein_coding_gene FALSE TRUE AT1G26880.1|AT1G26880.2 60S ribosomal protein L34 (RPL34A) Identical to 60S ribosomal protein L34-1 (RPL34A) [Arabidopsis Thaliana] (GB:Q42351;GB:Q8L9D3); similar to RPL34 (RIBOSOMAL PROTEIN L34), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69620.1); similar to 60S ribosomal protein L34 (GB:P41098); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195)|similar to RPL34 (RIBOSOMAL PROTEIN L34), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69620.1); similar to 60S ribosomal protein L34 (GB:P41098); similar to 60S ribosomal protein L34 (GB:P40590); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.339205888995673 -4.16246492551686 0.002835511655954 1 5.46584723491652 19.6060259542087 -0.339205888995673 0.0658110096022498
AT2G48020_at 7.99336594892095 8.18836178539821 7.54066746780417 7.52618483098445 8.57629680995252 7.9509102894174 8.7809376479497 8.54203495994022 9.35814214077375 8.90756235089125 8.95496967745757 9.17045999138199 8.73115890333889 8.68450871452219 8.54150429715512 8.97088541173484 8.16556538121091 8.6346915020565 9.1761690505805 0.148023067573845 0.148267900002294 0.161539921488565 0.154021910192130 0.150212116405509 0.170595787242365 0.154694255688342 0.153559155852784 0.154434712040689 0.154836545605566 0.143326044940529 0.145209702998188 0.150039705134627 0.155360319426141 0.159371535124395 0.143326044940529 0.177024896203589 0.156989471264379 0.158122865487489 2 0|2 /|+ 19653414 19654010 19653804.4 19651170 19654250 + gene protein_coding_gene FALSE TRUE AT2G48020.1|AT2G48020.2 sugar transporter, putative Identical to Sugar transporter ERD6-like 7 [Arabidopsis Thaliana] (GB:P93051;GB:Q8LFR8;GB:Q9ZU87); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT5G18840.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.446616715951943 -4.16189598213218 0.00283780101417418 1 5.46512771843458 17.0768495503488 -0.446616715951943 0.120694421412804
AT4G00730_at 7.62958146844241 8.0208402044319 7.38806228011297 7.92424595613773 8.24442530634941 7.85049886578218 7.61744347924243 7.60498615158484 6.87088028544422 6.9185938029564 7.75224906879702 8.23886784155606 7.89497947808587 8.08352396166685 7.43858380369116 8.09567928537385 7.64487289889894 7.52559428692482 7.25900679492067 0.186176529996191 0.185933850630730 0.193252091298421 0.188793860911793 0.195346386809711 0.198951364561060 0.191474622706302 0.200719856794932 0.198276015433755 0.193254890684397 0.19168382092632 0.185933850630730 0.185933850630730 0.188119348825501 0.199192985782914 0.189540423439190 0.201900401966248 0.195410971774293 0.19430506902097 4 4|0 -|/ 299758 300825 300317.6 299359 304508 - gene protein_coding_gene FALSE TRUE AT4G00730.1 ANL2 (ANTHOCYANINLESS 2); transcription factor Encodes a homeodomain protein of the HD-GLABRA2 group. Involved in the accumulation of anthocyanin and in root development similar to HDG1 (HOMEODOMAIN GLABROUS1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G61150.1); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeodomain protein HB2 [Picea abies] (GB:AAL83725.1); similar to START domain, putative [Medicago truncatula] (GB:ABE88255.1); similar to baby boom interacting protein 2 [Brassica napus] (GB:ABA70760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.475864404927033 4.16126261150166 0.00284035195099966 1 5.46432665739647 15.2102375252929 0.475864404927033 0.133589856648038
AT1G34630_at 5.14129685466677 4.96593530349062 5.42806991737447 5.14029100175686 5.95786826576578 5.634185499258 5.42275075329325 5.02814574220317 6.13657297406102 5.70724083168221 5.34650949423474 4.34828579476455 4.56472586880298 5.04240874462184 4.60756934937872 4.29516784482083 4.81622096139343 4.52766481945229 5.924018639973 0.206428716729154 0.196879320154417 0.193303160711717 0.198511266616494 0.201483228604107 0.197391268631028 0.206018775663479 0.203313244898421 0.222107982459343 0.195611194460453 0.196301242541366 0.201935604903622 0.203671003490354 0.203839060170947 0.205750970369729 0.193469561047612 0.217638170809289 0.196411956322773 0.200787245487619 1 1|0 +|/ 12686349 12687353 12686926.111 12685178 12687619 + gene protein_coding_gene FALSE TRUE AT1G34630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51150.1); similar to Os03g0190900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049229.1); similar to Acyl-CoA-binding protein (ISS) [Ostreococcus tauri] (GB:CAL54448.1) -0.414235098964874 -4.16047385544093 0.00284353214929516 1 5.46332897349958 10.6479078796873 -0.414235098964874 0.105839873885693
AT3G15980_at 7.488936018276 7.60598568247541 7.46234999725184 7.21429811254147 6.91109907432901 6.46297016373361 7.26498287981647 7.50031466965091 7.09242558912463 7.08937994556054 7.47404849958292 7.79777349803202 6.20958813325634 7.07745300259325 7.2984737478857 6.7451611541737 5.64990239767203 6.69029918114227 7.47151738056502 0.226812122227337 0.224997957027221 0.234731176349837 0.225146178329600 0.224488505168243 0.256005956503716 0.230729295116468 0.236035522177435 0.241464528813604 0.225933386660699 0.234742921557205 0.225738221273798 0.225527228267332 0.248405252519857 0.227039637621001 0.227995465882843 0.254153051523558 0.24446901433214 0.225675256785443 3 3|0 -|/ 5412082 5413076 5412501.2 5411322 5418451 - gene protein_coding_gene FALSE TRUE AT3G15980.1|AT3G15980.2|AT3G15980.3 coatomer protein complex, subunit beta 2 (beta prime), putative similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to Coatomer protein complex, subunit beta 2 (beta prime) [Rattus norve (GB:AAH88397.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692)|similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to Coatomer protein complex, subunit beta 2 (beta prime) [Rattus norve (GB:AAH88397.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.401156164440919 -4.15863301527482 0.00285096912341344 1 5.46100010473415 14.2816729531972 -0.401156164440919 0.0996276365708744
AT4G34230_at 7.4004359324345 7.72247641860702 8.29769908284063 8.30748645649991 7.80983134159052 7.41222447292865 7.90432687232376 8.08428683663873 6.25681296002825 6.84325711335265 6.71863678216326 6.68397631756011 7.48955205565358 7.23054894451888 6.12520126906205 6.46335819753935 7.55204976029392 7.11291933546144 5.86551786885854 0.224862757646642 0.223869166919185 0.238552640905119 0.2402565832821 0.227390735899436 0.23826718380625 0.231918661926228 0.231481989189075 0.23583200585567 0.227673308163525 0.227809538290195 0.229653998844889 0.223131458732952 0.22264653132039 0.22264653132039 0.224819979880746 0.234751908273354 0.232100713382458 0.232604146335103 4 4|0 -|/ 16386928 16387562 16387295.3 16386723 16388726 - gene protein_coding_gene FALSE TRUE AT4G34230.1|AT4G34230.2 CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5); cinnamyl-alcohol dehydrogenase|CAD5 (CINNAMYL ALCOHOL DEHYDROGENASE 5) Encodes a catalytically active cinnamyl alcohol dehydrogenase which uses p-coumaryl aldehyde as a preferred substrate. It can also use sinapyl, caffeyl, coniferyl and d-hydroxyconiferyl aldehydes as substrates. Identical to Probable cinnamyl-alcohol dehydrogenase (EC 1.1.1.195) (CAD) [Arabidopsis Thaliana] (GB:O49482); similar to CAD4 (CINNAMYL ALCOHOL DEHYDROGENASE 4), cinnamyl-alcohol dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G19450.1); similar to cinnamyl alcohol dehydrogenase [Ocimum basilicum] (GB:AAX83108.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase, zinc-containing; (InterPro:IPR002328); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.389548254416175 4.15841816083901 0.00285183849099667 1 5.46072825134679 14.4892924168303 0.389548254416175 0.0938783953985137
AT3G20270_at 6.17465047103768 6.28543478767025 5.57958953233413 5.7325995653929 5.54403084548602 5.66479733077629 6.62800279244817 6.8979831796197 5.81725224274187 6.29565926914269 6.00925519564773 6.51252340931816 6.13310882269316 6.04710845821498 6.37697149220163 6.26190735384095 5.72195052010375 5.60060087936017 5.52227981617802 0.185164947998554 0.186901033413365 0.196830966145769 0.206478598186885 0.182085343173532 0.203241511957756 0.193515160988402 0.190132710193034 0.191124126711743 0.186141433478152 0.190081778242242 0.188154132547311 0.183889721755705 0.188957874769505 0.182085343173532 0.190185522597624 0.190848548920934 0.203860342461453 0.191690872859016 3 3|0 +|/ 7070058 7070843 7070465.9 7067065 7070952 + gene protein_coding_gene FALSE TRUE AT3G20270.1|AT3G20270.2 lipid-binding serum glycoprotein family protein similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G04970.1); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant a [Gadus morhua] (GB:AAM52335.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant b [Gadus morhua] (GB:AAM52336.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124)|similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G04970.1); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant a [Gadus morhua] (GB:AAM52335.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant b [Gadus morhua] (GB:AAM52336.1); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124) -0.33086616606412 -4.15705915328302 0.00285734404487365 1 5.45900852494503 12.0440487509840 -0.33086616606412 0.0607318788823967
AT1G50410_at 6.9544534490256 7.19403920338403 7.21058853406376 7.31043452275326 7.10125431574637 6.81883337123488 6.53251396376877 6.5317363536773 6.03585821377733 6.36353868200445 6.51677407067219 6.77729877450373 6.40130764750819 6.44926687196346 6.12929097028314 7.00937372102469 6.70684578807922 6.64364364134001 6.2214914245011 0.169121822011917 0.167269779850570 0.161181486167055 0.163561084760187 0.159026817525673 0.162954344457397 0.169875769169729 0.161919104682775 0.173378031164028 0.165414109852888 0.165463774243300 0.161679703855971 0.166916707553583 0.172992918612983 0.171272082190558 0.159026817525673 0.159026817525673 0.159026817525673 0.183749810318109 1 1 + 18680264 18680938 18680546.273 18675831 18681224 + gene protein_coding_gene FALSE TRUE AT1G50410.1 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein similar to EDA16 (embryo sac development arrest 16), ATP binding / DNA binding / helicase/ protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G61140.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G11100.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20010.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD52846.1); similar to H0323C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68165.1); similar to Os08g0180300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061138.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.339677177864922 4.15704976951203 0.00285738209959621 1 5.45899664933853 13.3498256937565 0.339677177864922 0.0663801124411884
AT3G44330_at 6.24451578886981 6.6953143079289 5.87674334060838 5.92504786078259 6.5307429977155 6.11447103269465 6.40253146266125 6.36676316863009 6.15797451386818 5.82221034099306 5.37337694189415 5.99238635756878 4.93810366225973 5.31574686301503 5.84603687126851 5.24925922484195 5.43745886227657 5.27420652640414 5.85230205217615 0.23021780092649 0.213241212197049 0.239917687537225 0.218960395033251 0.217021432541349 0.219625985876706 0.220193697430564 0.218060915151349 0.235888694057899 0.21435596348886 0.228549885587287 0.213241212197049 0.22437366405496 0.219316678368228 0.235464417361438 0.216702595781049 0.229470362446326 0.221495427666953 0.220389760800824 3 3|0 +|/ 16020509 16021606 16021153.3 16017662 16021952 + gene protein_coding_gene FALSE TRUE AT3G44330.1 similar to PREDICTED: similar to nicalin [Tribolium castaneum] (GB:XP_971811.1); similar to Os08g0102100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060766.1); contains InterPro domain Nicastrin; (InterPro:IPR008710) -0.415685131363459 -4.15694848591374 0.00285779287728406 1 5.45886846917278 11.9557583530048 -0.415685131363459 0.106694109082008
AT3G48570_at 6.64298925776078 7.19791907660445 6.84554022598044 7.06205514084754 7.08646479725188 6.6625943277347 6.25903895957317 6.44823818273508 6.08642070555947 5.96416328386847 7.21012126720196 7.11888614175175 6.76469163799432 7.03048407762177 6.39212160311824 6.56135929674371 5.9642120976275 6.05834476288316 5.88129490454895 0.188687534869567 0.177450835490545 0.182463321638454 0.176954810036240 0.173221893127678 0.187467822648195 0.178980449457167 0.18054746344354 0.202340347704825 0.177162728102623 0.174499260337135 0.178199778963604 0.176339332250549 0.180710304180362 0.185192417027244 0.183613125483003 0.199440661604591 0.187890628417044 0.178405396826576 3 3|0 -|/ 18014964 18015868 18015321.1 18014898 18015959 - gene protein_coding_gene FALSE TRUE AT3G48570.1 protein transport protein SEC61 gamma subunit, putative Identical to Protein transport protein SEC61 gamma-3 subunit (SEC61G3) [Arabidopsis Thaliana] (GB:Q9SMP2); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT4G24920.1); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT5G50460.1); similar to Os02g0178400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046076.1); similar to Protein transport protein SEC61 subunit gamma (GB:Q7Z1B8); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_797211.1); contains InterPro domain Protein secE/sec61-gamma protein; (InterPro:IPR001901); contains InterPro domain Protein translocase SEC61 complex gamma subunit; (InterPro:IPR008158) 0.468675949872056 4.1568912017801 0.00285802523358994 1 5.4587959720458 13.0830152836994 0.468675949872056 0.130686447185292
AT1G29900_at 8.07468922193968 8.2453493462437 8.00147679482542 8.1016763210295 7.69899105526618 8.12744417669943 8.59710014172369 8.61834122931183 8.35893235935966 8.21961055711717 8.27715151110067 7.96510942819482 7.61365421248171 7.90040403653285 8.16666781137592 7.82607177759363 7.7367846880429 7.9748612918143 8.21158396208757 0.130194324517845 0.127945145281250 0.133856875338568 0.13174993596921 0.136634831814964 0.130585307854021 0.130841991581907 0.134747665077148 0.139469729166729 0.127191975871469 0.128427580614460 0.129062112633064 0.135039207087216 0.131598599905135 0.130585071697126 0.127191975871469 0.142481676069948 0.131677941794886 0.133954232008934 1 1 + 10471385 10471935 10471606.182 10468038 10472195 + gene protein_coding_gene FALSE TRUE AT1G29900.1 CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding / carbamoyl-phosphate synthase carbamoyl phosphate synthetase large chain (CARB) mRNA, similar to MCCA (3-methylcrotonyl-CoA carboxylase 1) [Arabidopsis thaliana] (TAIR:AT1G03090.2); similar to COG0458: Carbamoylphosphate synthase large subunit (split gene in MJ) [Nostoc punctiforme PCC 73102] (GB:ZP_00109569.1); similar to carbamoyl-phosphate synthase large subunit [Nostoc sp. PCC 7120] (GB:NP_487849.1); similar to putative carbamoyl phosphate synthase large subunit [Nicotiana tabacum] (GB:CAC85727.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Carbamoyl-phosphate synthetase large chain, oligomerisation; (InterPro:IPR005480); contains InterPro domain Carbamoyl-phosphate synthetase large chain; (InterPro:IPR005483); contains InterPro domain Carbamoyl-phosphate synthase, large subunit, glutamine-dependent; (InterPro:IPR006275); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain MGS-like; (InterPro:IPR011607); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) -0.366130214697813 -4.15589851850661 0.00286205498054727 1 5.45753957029106 16.2811153962950 -0.366130214697813 0.0817558447147466
AT4G24820_at 9.78342893731545 9.76743855515153 10.2066486716693 10.1529430772511 10.1241995763662 9.94636136990903 9.90304602291823 9.37863403915267 9.43800929085217 9.4095681210478 9.93142137256928 9.85313216650819 9.53144456298023 9.57750175078668 9.66161719545548 9.58882051567555 9.57029675953707 9.63072429606905 8.9903447678961 0.0974439795334434 0.0924275401950717 0.0969957029377792 0.0930606345581853 0.0942851334697111 0.0938513677702064 0.092984481565193 0.103247292003792 0.0999079646910072 0.0965778275355625 0.093917027859867 0.0938005788320218 0.0976735926142902 0.0958843383901341 0.101039659559038 0.0922523319900193 0.0924723452376139 0.099290048619262 0.102297537489982 4 4|0 -|/ 12790484 12791398 12791058.556 12789040 12792732 - gene protein_coding_gene FALSE TRUE AT4G24820.1|AT4G24820.2 26S proteasome regulatory subunit, putative (RPN7) Identical to Probable 26S proteasome non-ATPase regulatory subunit 6 [Arabidopsis Thaliana] (GB:Q93Y35;GB:Q9SZX2); similar to FUS6 (FUSCA 6) [Arabidopsis thaliana] (TAIR:AT3G61140.1); similar to 26S proteasome subunit RPN7 [Capsicum annuum] (GB:ABK42076.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.394106859673377 4.15509821838865 0.00286530819268027 1 5.4565265356596 19.3815511415732 0.394106859673377 0.0963176832539323
AT2G31510_at 9.37769338726656 9.4794533648097 9.92733632496012 9.7514059125542 10.1123332517475 9.87212220340795 9.33183621220414 9.120186611445 9.04364918750252 9.25814865208014 9.43171608587257 9.37925333642062 9.50717670404727 9.43007900083028 8.91848268718332 9.4049542076268 9.22312936161104 9.16407589681644 9.3560159098797 0.137168888242369 0.136249577833139 0.136293125469246 0.141234011766744 0.135686126397804 0.135576498523175 0.130729188779130 0.137645463087948 0.155761386552653 0.143132288678223 0.140291529248936 0.136729839792407 0.138517238029732 0.137916261440761 0.139815017495624 0.136202904256430 0.158713658868427 0.151642938192908 0.141324151037012 2 2 - 13423920 13424803 13424231.222 13423723 13428247 - gene protein_coding_gene FALSE TRUE AT2G31510.1 IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G65430.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G05890.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); similar to ARIADNE-like protein [Musa acuminata] (GB:AAR96008.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.338297094733173 4.15496062913846 0.00286586789086479 1 5.45635236141421 18.8848607384853 0.338297094733173 0.0656248075250183
AT3G11770_at 5.6323265705355 6.62030236606079 5.97066761939233 6.57685167667221 6.91464907324599 7.05588505194378 5.91206023872067 5.79236764315178 5.1413516552928 5.74046706351798 6.1837048887381 6.57844978695495 6.65553958121552 6.16769602360804 5.97436187266004 6.35566526847036 6.81270167902264 6.52145024054717 6.37746989495032 0.206568756686398 0.189317317412205 0.191095768229022 0.195984290403941 0.203651244238716 0.187701021028816 0.192022015662888 0.196810037846022 0.202517945249169 0.191184557545109 0.193601664793332 0.189178161142491 0.189712134825842 0.20365228300876 0.186626158228003 0.189984629962979 0.201367513129961 0.190060546711085 0.188284067860687 3 3 - 3721542 3722000 3721764.364 3721332 3722664 - gene protein_coding_gene FALSE TRUE AT3G11770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06450.1); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.646674556880731 4.15448243257295 0.00286781405446287 1 5.45574698669258 12.3890349660849 0.646674556880731 0.203133242358439
AT3G02460_at 6.49105528197162 6.41555518925168 6.73097018510151 6.53304974304218 7.42841658762314 6.99846221239846 6.75446925177781 6.39906517941484 6.05970177497928 6.23708152646686 7.05749868140534 6.64033776897927 6.42941634467332 6.68926690627615 6.04420106376073 6.60213763458369 6.53919668893357 6.3202486308903 6.0986869172068 0.197259600103447 0.193662073748348 0.19875544635627 0.196371757070258 0.204540914396197 0.199485414468612 0.205447124091284 0.206400517468059 0.211406283986521 0.203031551468577 0.196120798036744 0.198060007376606 0.195828624072615 0.199110001581521 0.197194371326361 0.193615177962074 0.212212956579588 0.199896757952913 0.196504936628404 3 3|0 +|/ 506880 508072 507459.778 505441 508435 + gene protein_coding_gene FALSE TRUE AT3G02460.1|AT3G02460.2 plant adhesion molecule, putative similar to PAM1 (PLANT ADHESION MOLECULE 1), RAB GTPase activator [Arabidopsis thaliana] (TAIR:AT5G15930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96952.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.408076507578742 4.15276286671951 0.00287482405622912 1 5.45356976684957 13.0549361394004 0.408076507578742 0.103260948589027
AT2G17033_at 7.61224360750124 7.85634275434596 6.96992919838832 7.1421305712177 7.90883326047188 7.44963154937505 8.21444522550546 7.71659826526956 7.68887794154794 7.54748184006816 7.0813345244391 7.26596901004291 6.9326457074681 7.21702182099974 7.0814527876202 7.16575325714046 7.05933460075811 6.94462264680516 7.37073294964471 0.178917729172376 0.163489401160399 0.167641996659739 0.168167647384844 0.165094847398738 0.163432775954387 0.170041916160156 0.167625664575873 0.16789734309911 0.169615949099401 0.169490809413742 0.166089870426367 0.161713362288520 0.161727662719732 0.169570479686226 0.160890524350752 0.168231193510101 0.169970213206946 0.168766868945801 2 2 + 7409720 7410193 7409908.455 7408220 7410728 + gene protein_coding_gene FALSE TRUE AT2G17033.1|AT2G17033.2 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G53170.1); similar to EMB2750 (EMBRYO DEFECTIVE 2750), binding [Arabidopsis thaliana] (TAIR:AT3G06430.1); similar to pentatricopeptide (PPR) repeat protein-like [Cucumis melo] (GB:AAU04769.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625) -0.462228550485015 -4.15205451176729 0.00287771708385688 1 5.45267273699203 14.9233764897575 -0.462228550485015 0.128102014261623
AT1G65720_at 11.2817261996296 11.5541498799072 11.6772582121785 11.8173190862914 11.6948902360478 11.6385410647863 11.2203222746954 11.4786205348225 11.0974443033295 10.9953802320724 11.6118051167374 11.3661025656814 11.5495426503896 11.4167214494913 11.1126023872020 11.3486045291197 11.3203394832181 11.5438954897729 11.0319920406295 0.0888204276492188 0.0899224026562374 0.0930302893302812 0.0900879835455148 0.090614745223821 0.0893583276383021 0.0929729197315952 0.088490194548054 0.111102640019487 0.0908335479553236 0.0902362574895804 0.087715967316559 0.089119769439621 0.0914029304190696 0.0884454111439442 0.0894831722253276 0.091906802575771 0.0954653792680133 0.0924759446863188 1 1 - 24444140 24444644 24444347.727 24443922 24444736 - gene protein_coding_gene FALSE TRUE AT1G65720.1 similar to Os03g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048714.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN61478.1) 0.345196805585053 4.15166767286476 0.00287929830920293 1 5.45218282417882 22.7705070531925 0.345196805585053 0.0700230002889986
AT1G21640_at 9.72251863536912 9.93520568301172 10.0023928173418 9.98567285605734 9.99966107236073 9.83531376083531 10.5218414068697 10.3692155749906 10.0266807568116 10.0814597055372 9.71426213727082 9.4962910971082 9.67373898231123 9.04629078832698 9.18911030469484 9.74814173420311 9.83395518669733 9.77949784556243 9.94830194814065 0.120903031580275 0.114606710824336 0.118342059379900 0.116754879722733 0.11486133752529 0.118527428565465 0.116659749871159 0.117174174881681 0.122573634026310 0.122141102009149 0.125218437157594 0.117180470949395 0.123018316858839 0.132010603487460 0.123959407270538 0.114606710824336 0.122445802786520 0.120003656437417 0.117572942222652 1 1|0 +|/ 7591596 7592634 7592056.4 7588586 7592879 + gene protein_coding_gene FALSE TRUE AT1G21640.1 NADK2 (NAD kinase 2); NAD+ kinase/ calmodulin binding Encodes a protein with NAD kinase activity. The protein was also shown to bind calmodulin. Identical to NAD kinase 2, chloroplast precursor (EC 2.7.1.23) (AtNADK-2) (NADK2) [Arabidopsis Thaliana] (GB:Q9C5W3;GB:Q9XI15); similar to NADK1 (NAD kinase 1), NAD+ kinase [Arabidopsis thaliana] (TAIR:AT3G21070.2); similar to Os11g0191400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067415.1); similar to Predicted sugar kinase (ISS) [Ostreococcus tauri] (GB:CAL57506.1); contains InterPro domain ATP-NAD/AcoX kinase; (InterPro:IPR002504) -0.320044162859717 -4.15086437768878 0.00288258479831869 1 5.45116540637418 19.8359652990304 -0.320044162859717 0.0535687408383094
AT1G07705_at 5.37972556139653 5.64387052585597 6.06494852281592 5.64775340496886 6.1191322299468 5.68120641564 5.48522599441245 5.290027298058 3.91583444036833 3.97170883751117 4.00077027019 4.5065057420932 4.3835362085216 4.5578812596687 4.31592614876999 4.34962561840264 4.95622167648182 4.18381971373358 3.96751669060192 0.221226225753540 0.218456190273355 0.221418830781905 0.220764097004924 0.216980317054975 0.226971275220989 0.222065528726192 0.221308239384148 0.230888896226869 0.218061655063382 0.217248307938456 0.217704422816566 0.216846589248267 0.221464732122717 0.224406200330256 0.217401306974647 0.226340671606700 0.227612609377806 0.220192261631216 1 1|0 +|/ 2384414 2384950 2384740.333 2381612 2386089 + gene protein_coding_gene FALSE TRUE AT1G07705.1|AT1G07705.2 transcription regulator| similar to VIP2 (VIRE2 INTERACTING PROTEIN2), transcription regulator [Arabidopsis thaliana] (TAIR:AT5G59710.1); similar to NOT2/NOT3/NOT5 [Medicago truncatula] (GB:ABE93791.1); similar to VIP2 [Nicotiana benthamiana] (GB:AAY15746.1); contains InterPro domain NOT2/NOT3/NOT5; (InterPro:IPR007282)|similar to VIP2 (VIRE2 INTERACTING PROTEIN2), transcription regulator [Arabidopsis thaliana] (TAIR:AT5G59710.1); similar to NOT2/NOT3/NOT5 [Medicago truncatula] (GB:ABE93791.1); similar to NOT2/NOT3/NOT5 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98742.1); similar to VIP2 [Nicotiana benthamiana] (GB:AAY15746.1); contains InterPro domain NOT2/NOT3/NOT5; (InterPro:IPR007282) 0.44182348599219 4.150022512976 0.00288603340114459 1 5.45009901758821 9.8432224870834 0.44182348599219 0.119107112188197
AT4G22200_at 8.77703435517038 8.66415562005081 9.04874936789373 8.78310438764117 8.83314427632132 8.74121862647731 10.0568941395193 9.74208031046138 9.0520776878838 9.73181706714074 8.87202287683836 9.12438274142581 9.33394665287514 9.1127561827192 8.87202042943782 9.35645497080815 9.3741426626278 9.09439604701353 9.39570248230497 0.096901380731004 0.0900197048227778 0.0945050294075135 0.0966461243593932 0.0916158722351933 0.102881304756060 0.0901303408541007 0.0935827573685803 0.0959259539410496 0.0902527168156187 0.095138464008978 0.0894331480189126 0.0931345970638865 0.096129226764165 0.0929479172889737 0.0905471032282854 0.0998512660689927 0.096629277742756 0.0908817223853755 4 4 - 11746948 11747329 11747196.091 11746525 11750710 - gene protein_coding_gene FALSE TRUE AT4G22200.1 AKT2 (Arabidopsis K+ transporter 2); cyclic nucleotide binding / inward rectifier potassium channel Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. Identical to Potassium channel AKT2/3 (AKT2) [Arabidopsis Thaliana] (GB:Q38898;GB:Q42408;GB:Q9M0L6); similar to AKT1 (ARABIDOPSIS K TRANSPORTER 1), cyclic nucleotide binding / inward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT2G26650.1); similar to pulvinus inward-rectifying channel for potassium SPICK1 [Samanea saman] (GB:AAD16278.1); similar to potassium channel 2 [Populus tremula x Populus tremuloides] (GB:CAC05489.1); similar to potassium channel [Vicia faba] (GB:CAA71598.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) -0.35458535017935 -4.14997928976054 0.00288621057943545 1 5.45004426347624 18.3486548352310 -0.35458535017935 0.0756046764886644
AT2G18400_at 6.09613492039179 6.23166856604583 4.708290645152 4.65210841495973 4.75671280012379 4.7939243967481 5.52730062919727 5.47560356586554 5.70636616996196 5.46768452580146 6.14163588908874 6.86387050001073 5.40423098427663 6.07297160392905 6.9840491597208 5.82123747977507 4.88673448992772 6.18727098824487 5.3970724399716 0.222950834620255 0.221417981805592 0.232057210218818 0.222190200287693 0.222396339086258 0.2271749632808 0.219017021825197 0.219530820364118 0.218455841334507 0.221087631065881 0.225779755000672 0.219294601926602 0.218979086996918 0.223477986352660 0.22227239904177 0.216499984477435 0.227862688245942 0.222080268388404 0.218657994898037 2 2 - 7996772 7996976 7996880 7996561 7997668 - gene protein_coding_gene FALSE TRUE AT2G18400.1 ribosomal protein L6 family protein similar to EMB2394 (EMBRYO DEFECTIVE 2394), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G05190.1); similar to putative ribosomal protein L6 [Oryza sativa (japonica cultivar-group)] (GB:BAD10705.1); similar to Os03g0725000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051126.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, signature 1; (InterPro:IPR002358) -0.291687715584589 -4.14874302471608 0.00289128314989092 1 5.44847805553645 11.0646969167022 -0.291687715584589 0.0276796059947880
AT3G44280_at 7.49962796009429 7.95084845574344 7.89567035874037 8.37586594368773 8.57497571322784 7.89511822452366 7.8144568165451 7.854502290715 7.13293031875236 8.03132872796755 8.46433173911912 8.45598039836105 8.32147157358953 8.38867207771245 8.26903661409105 8.2973900396865 8.13787433741152 7.76017219184555 7.5582524342522 0.200481700576422 0.197958909093977 0.192298295397662 0.194781023525003 0.193896216209532 0.201229778286508 0.192989345242034 0.206134731773865 0.212031826593430 0.194868051402287 0.194328161811714 0.192467956154565 0.191083913181224 0.188858057037285 0.198239413909525 0.19385506373635 0.197815286378672 0.203471367898226 0.205996383738134 3 3 - 15979795 15981481 15980634.6 15979580 15982154 - gene protein_coding_gene FALSE TRUE AT3G44280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22280.1); similar to Os02g0536100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047042.1); similar to Os03g0836500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051825.1); similar to unknown protein, 3'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAO41143.1) 0.546622153545086 4.14563844218929 0.00290406386936755 1 5.44454372847622 15.9006515279769 0.546622153545086 0.163991331191769
AT1G08490_at 8.00880775728256 8.0874996590597 7.76159198667306 7.94326527631951 7.69390078290997 7.51913959644166 7.70374248682558 7.97086665654511 8.5056152445106 7.9394085752004 7.45233344035177 7.74796037565094 7.6171261701529 7.94736627107129 7.85884342352782 7.7292447536025 7.7237636321526 7.56653143522079 8.04984293696253 0.155508052152606 0.153226825365472 0.159732199790430 0.156657475797382 0.148624671915821 0.156598979527431 0.155979669283625 0.149020093581688 0.162284841292230 0.151221532801704 0.153119097169152 0.151103981959966 0.154216604109880 0.155148602891792 0.152690379218927 0.152408997904419 0.153374297396529 0.148624671915821 0.148624671915821 1 0|1 /|- 2685995 2686983 2686601.222 2685662 2688598 - gene protein_coding_gene FALSE TRUE AT1G08490.1 ATCPNIFS/ATNFS2/ATSUFS/CPNIFS/SUFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase Chloroplastic NifS-like protein that can catalyze the conversion of cysteine into alanine and elemental sulfur (S(0)) and of selenocysteine into alanine and elemental Se (Se(0)). Overexpression enhances selenium tolerance and accumulation. Identical to Cysteine desulfurase 2, chloroplast precursor (EC 2.8.1.7) (EC 4.4.1.16) (Selenocysteine lyase) (Protein AtCpNifS) (NIFS-like protein) (Plastid sufS-like protein) (NFS2) [Arabidopsis Thaliana] (GB:Q93WX6;GB:Q9SJE3); similar to ATNIFS1/NIFS1 (ARABIOPSIS THALIANA NITROGEN FIXATION S HOMOLOG 1), cysteine desulfurase/ transaminase [Arabidopsis thaliana] (TAIR:AT5G65720.1); similar to Aminotransferase, class V [Medicago truncatula] (GB:ABE89981.1); contains InterPro domain Cysteine desulphurases, SufS; (InterPro:IPR010970); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) -0.336407063591856 -4.14384093607322 0.00291149138031068 1 5.4422650466699 15.7712776618942 -0.336407063591856 0.0650037164419302
AT3G25800_at 9.33885341770306 9.31640369911825 9.5916473645326 9.65113248290482 9.5307530084591 9.50322288108535 9.22441880185871 9.20369905196086 8.59191443274283 8.65192449412158 8.8429789923364 8.88755723475339 8.91596869233611 8.8778696213088 8.92566192375363 8.97306575855511 9.07996225473517 8.88791441201218 8.72752714278108 0.0983607260214496 0.0957684050020377 0.0985963315844977 0.0938152973713537 0.0953211192493537 0.0963860140657279 0.094090416170257 0.0994883455486102 0.114068690886676 0.0930804149957161 0.101387979492066 0.0974738928268839 0.0969270235141046 0.0965216740997038 0.100290000182709 0.0965313926273647 0.100994008075663 0.098539277780144 0.0956453754492871 3 3 - 9424139 9424990 9424575.909 9423825 9427281 - gene protein_coding_gene FALSE TRUE AT3G25800.1|AT3G25800.2 PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A); protein phosphatase type 2A regulator one of three genes encoding the protein phosphatase 2A regulatory subunit Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (PP2A, subunit A, beta isoform) (AtA beta) (PP2AA2) [Arabidopsis Thaliana] (GB:Q38950;GB:Q9LRZ9); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to protein phosphatase 2A [Nicotiana tabacum] (GB:CAA66487.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357)|Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (PP2A, subunit A, beta isoform) (AtA beta) (PP2AA2) [Arabidopsis Thaliana] (GB:Q38950;GB:Q9LRZ9); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.2); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to protein phosphatase 2A [Nicotiana tabacum] (GB:CAA66487.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.282547764796965 4.14220814050704 0.00291825593640162 1 5.44019468003705 18.2105135306723 0.282547764796965 0.0125147183031318
AT2G31130_at 5.92803588763255 5.97977095896421 6.5773804951429 6.31485315010503 6.75063885743621 6.66364973903868 5.94560626266264 5.62504202120038 5.09106699324313 5.6769382373596 5.3495401616267 5.05557113609332 5.29920885989614 5.60988547123864 4.98778817796933 6.03272115776968 5.84289746642182 5.57406807829916 5.65524423513708 0.174150310408543 0.174246743156709 0.178613175664446 0.173710088006715 0.169604701680679 0.173233084315443 0.173074445721858 0.175743947601837 0.185481639405549 0.178211444041795 0.170447009629533 0.174068343258556 0.173726689698879 0.174790332256849 0.174224588964940 0.174448185568476 0.175469944643638 0.169604701680679 0.173132322160003 2 2 - 13270953 13271825 13271327.091 13270656 13273637 - gene protein_coding_gene FALSE TRUE AT2G31130.1 similar to hypothetical protein MtrDRAFT_AC135231g7v1 [Medicago truncatula] (GB:ABE82891.1) 0.350780176450090 4.1417774898711 0.00292004289728852 1 5.43964854259004 11.6948104476450 0.350780176450090 0.0738125641653172
AT1G64050_at 5.12904827535436 5.51159804530439 6.09445776165591 5.3765045971762 6.20958841958582 6.60762729288898 5.77245912530043 5.36284457561529 4.97792623554128 4.50213612606917 5.37541100958939 5.16119034272429 5.33532304933777 5.35801568116766 5.10745260336329 5.33532355597305 5.85888903758792 4.8558579444957 4.90581216178249 0.222518670891505 0.225995605530003 0.224127594140332 0.227647507290800 0.229253744841919 0.235244745739021 0.236701968219015 0.22785462911994 0.227590988305561 0.228639238579864 0.228561572144791 0.227944819853538 0.227265436190486 0.235153757825654 0.232821521957708 0.223598311224447 0.252774364497781 0.230781373691504 0.226072776857531 1 1 + 23768616 23769334 23769008.182 23766028 23769696 + gene protein_coding_gene FALSE TRUE AT1G64050.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD27894.1) 0.565599203832672 4.13943764166620 0.00292977248473434 1 5.43668065824394 10.8048782170239 0.565599203832672 0.172014951458992
AT1G76390_at 6.77202391641762 6.724019832215 7.31115527155351 7.55227271801206 6.54365329897287 6.85997963745578 5.50963960998233 5.98073255342001 5.63972645436365 5.22333063590718 5.7203333651245 5.65443183246677 5.31733669216903 5.67576982184845 5.15885823253211 5.77810331587889 5.4613022247449 5.63825523097577 5.76333481395056 0.240316170441021 0.237292744374663 0.250898530061103 0.245458369048835 0.241058804474899 0.252101781293601 0.23830980131537 0.237292744374663 0.239943590473365 0.250916026497358 0.23845840604099 0.238920657487341 0.243688905773878 0.240179993202535 0.240183948682002 0.237292744374663 0.240916368595212 0.242043404060083 0.237292744374663 1 1 + 28662840 28663377 28663084.091 28660284 28663605 + gene protein_coding_gene FALSE TRUE AT1G76390.1|AT1G76390.2 armadillo/beta-catenin repeat family protein / U-box domain-containing protein|binding / ubiquitin-protein ligase similar to armadillo/beta-catenin repeat protein-related / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20780.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50990.1); similar to armadillo/beta-catenin repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97086.1); similar to Os03g0657100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050813.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613); contains InterPro domain HEAT; (InterPro:IPR000357) 0.414289729108453 4.13616073894598 0.00294345698727186 1 5.43252260697472 12.2030243418577 0.414289729108453 0.107019014591505
AT3G24030_at 6.700400223923 7.07292883569407 6.78929469835869 6.75100685569948 6.73769245070125 7.0454933267783 8.12498754665428 8.0087834638196 6.52209860629897 7.18502982203598 6.94396020792298 6.60860302000017 6.66760073717216 6.84931253655978 6.4905512926684 7.40903586926075 7.20425866804364 6.74610195402667 7.18576807605924 0.222619282185694 0.204282002093137 0.202412554581705 0.202093587926031 0.20149572417663 0.205609316461666 0.203531783056891 0.203743096485167 0.199291741675242 0.201783618777274 0.196993074341563 0.206891075488375 0.209304835427572 0.216983831907542 0.201197457614241 0.199633152489499 0.206465297098086 0.206172716217232 0.203633689324545 3 3 - 8679953 8680545 8680257.545 8679577 8680831 - gene protein_coding_gene FALSE TRUE AT3G24030.1 hydroxyethylthiazole kinase family protein similar to Os01g0363600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043033.1); similar to hydroxyethylthiazole kinase [Chlamydomonas incerta] (GB:AAV41809.1); contains InterPro domain Hydroxyethylthiazole kinase; (InterPro:IPR000417); contains InterPro domain Hydroxyethylthiazole kinase, monofunctional; (InterPro:IPR011144) -0.372636991864773 -4.13473406424313 0.00294943623722481 1 5.4307117214484 14.0684368604560 -0.372636991864773 0.0862653273993474
AT2G01690_at 4.9164603653893 4.52018156304083 5.05947889936771 5.05629301950555 5.4280584362965 4.62062733338504 5.49086438933168 5.00933673958912 4.47177863858281 4.63735164796359 5.60594859398147 5.51401380437016 5.80758797241056 5.7486156473969 5.42708526939189 5.92299090223058 5.68301640022114 5.30545601708256 4.48477900875185 0.206324936009350 0.193752023943220 0.200723715226331 0.198248505608633 0.209336273785825 0.201827293759291 0.197363780376922 0.196926234597653 0.220212336176886 0.202165627866479 0.194137721182810 0.194804770332601 0.196354982012398 0.207184708891493 0.200031387796014 0.197256389667327 0.216645730678969 0.208013513294750 0.203075195566677 2 2|0 -|/ 309144 310032 309549.2 308701 313804 - gene protein_coding_gene FALSE TRUE AT2G01690.1|AT2G01690.2 binding| similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.1); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05340.1); similar to Os03g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049425.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357)|similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05340.1); similar to Os03g0223700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049425.1); contains InterPro domain HEAT; (InterPro:IPR000357) 0.576219942626937 4.13454451097748 0.00295023164145709 1 5.43047109392380 10.0917338053974 0.576219942626937 0.176554851442163
AT3G59840_at 6.93942355616814 7.13481220415628 5.83676031990278 5.96144796026107 6.23094498443801 6.62814255133984 6.4354603440316 7.18134911304381 6.55937886355479 6.45073834510264 6.12439503170549 6.45950165219441 6.01353277022883 6.41601954912319 6.46269622512027 6.55459553185453 6.50741860313006 6.343204203542 6.88584078998003 0.167162394309489 0.177447557576639 0.185959882295827 0.173669344640908 0.168613755627446 0.180049062335634 0.171212173837025 0.181523324294683 0.180157314039401 0.175261570443468 0.182590935333519 0.166698346041207 0.177596238279465 0.171807023228623 0.171178534613785 0.169885359516674 0.185476916801034 0.170005674441913 0.166698346041207 3 3 - 22116841 22117098 22116967.818 22116499 22117175 - gene protein_coding_gene FALSE TRUE AT3G59840.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93068.1) -0.515126452024002 -4.13368451054079 0.00295384326726736 1 5.42937929197665 13.0396208518718 -0.515126452024002 0.151641680215617
AT2G37330_at 5.15786024249508 5.75703230599591 4.81197363049423 4.7425053061883 5.28433087594338 5.67352466281328 6.10558848630265 5.72715929796252 4.84086674590945 5.25127362515339 4.9405990853582 4.54361864303551 4.79157359903107 4.61665979542591 4.48988292155900 4.57116213143582 5.15802595175618 5.05114858729531 5.47278716463626 0.265077508975936 0.258318679119659 0.260012018091476 0.261053550467223 0.258318679119659 0.260272900241065 0.264846792627713 0.268179248711116 0.27573944642534 0.262637674098370 0.258318679119659 0.258957288715202 0.264092095003981 0.258763063438063 0.261964535399354 0.259278932919481 0.259795804267695 0.258785010064964 0.261035121798831 2 2 + 15676494 15677220 15676878.182 15676217 15677266 + gene protein_coding_gene FALSE TRUE AT2G37330.1 ALS3 (ALUMINUM SENSITIVE 3) Encodes an ABC transporter-like protein, without an ATPase domain, required for aluminum (Al) resistance/tolerance and may function to redistribute accumulated Al away from sensitive tissues in order to protect the growing root from the toxic effects of Al. similar to Os05g0119000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054479.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90494.1); contains InterPro domain Conserved hypothetical protein 245; (InterPro:IPR005226) -0.488400901766739 -4.13215425225347 0.00296028140340927 1 5.42743625583519 10.3868183599887 -0.488400901766739 0.140431856593774
AT1G50260_at 5.94997132944794 6.20325158780889 7.097422091821 6.48660930321938 6.96914427360762 6.79859788117795 6.35242787763227 6.04576879613091 5.41211881083856 6.79034735025173 6.77491438896972 6.67099693764958 6.4515107034148 6.78983839252029 6.4825469168833 6.7780987726651 7.028736980671 5.91415802921664 6.95354159356429 0.268466135128261 0.255522696327694 0.262604016685688 0.255522696327694 0.274309245492124 0.255522696327694 0.255522696327694 0.270645015552213 0.323112444643747 0.255522696327694 0.255522696327694 0.282496848693801 0.271354693295001 0.266277787899087 0.266722978677865 0.257934277063570 0.292315437541639 0.285282146864392 0.255522696327694 1 1|0 -|/ 18621958 18622194 18622076.75 18621261 18625358 - gene protein_coding_gene FALSE TRUE AT1G50260.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19830.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22937.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.463051355866045 4.13005038121195 0.00296915741400320 1 5.42476421512717 12.9862421718392 0.463051355866045 0.129544913449810
AT3G54110_at 8.01600105734891 8.03124550949792 7.71105241195948 7.82837365703247 7.89482358269486 7.51354404317083 8.0140464692298 8.06397516170145 7.1067764449219 6.96303462856338 7.86291781393757 8.0647759671647 7.51865804002481 7.81438574220372 8.14799596965405 7.70174352609595 7.99084977920474 7.85806572578997 6.60128187526338 0.157419105110149 0.144645396908651 0.148587420999656 0.146155267927011 0.146303496147187 0.144874121675640 0.148589651697987 0.150127991719109 0.166311005793181 0.150140071579844 0.148545984156570 0.146850044584425 0.144645396908651 0.148649037004357 0.144645396908651 0.144720817074645 0.148498000395017 0.148806628391562 0.153297305740742 3 3|0 +|/ 20050981 20051799 20051402.222 20049658 20052188 + gene protein_coding_gene FALSE TRUE AT3G54110.1 ATPUMP1/UCP1 (UNCOUPLING PROTEIN 1); binding / oxidative phosphorylation uncoupler Member of Uncoupling protein PUMP2 family. Encodes a mitochondrial uncoupling protein AtUCP1 involved in maintain the redox poise of the mitochondrial electron transport chain to facilitate photosynthetic metabolism. Disruption of UCP1 results in a photosynthetic phenotype. Specifically there is a restriction in photorespiration with a decrease in the rate of oxidation of photorespiratory glycine in the mitochondrion. This change leads to an associated reduced photosynthetic carbon assimilation rate. similar to ATUCP2 (UNCOUPLING PROTEIN 2), oxidative phosphorylation uncoupler [Arabidopsis thaliana] (TAIR:AT5G58970.1); similar to mitochondrial uncoupling protein [Solanum tuberosum] (GB:CAA72107.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) 0.342595564264893 4.12831633082181 0.00297649462826237 1 5.42256129137377 15.2642769299590 0.342595564264893 0.069623835619592
AT3G01510_at 5.46118390446365 5.35616971047455 5.21770300912076 5.03382753436611 5.10217710445596 4.79851489832695 6.67038236711816 6.89005898413826 5.29643813890731 6.29257950746436 5.88689028685617 6.23983165657384 5.74855979504849 6.38968404229722 6.58784497891157 5.87241487601807 5.81368637370715 6.48560073983772 5.73032718561864 0.194718361530198 0.180878940567150 0.201583124752604 0.20310193254649 0.184205503350809 0.189638775746181 0.207236779151641 0.185802089934315 0.184383781350152 0.191232108471694 0.180459391477432 0.180459391477432 0.180459391477432 0.189090296963318 0.184237424144136 0.18074691001805 0.191896846483263 0.186549153183070 0.190596632429499 3 3|0 -|/ 198883 199943 199444.222 198686 201749 - gene protein_coding_gene FALSE TRUE AT3G01510.1 5'-AMP-activated protein kinase beta-1 subunit-related similar to SEX4 (STARCH-EXCESS 4), oxidoreductase/ polysaccharide binding / protein tyrosine/serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52180.1); similar to Os08g0379300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061690.1); similar to protein tyrosine phosphatase-like [Solanum tuberosum] (GB:ABB87109.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340) -0.350721977660851 -4.12724050781855 0.00298105647610277 1 5.42119431234714 11.5168417078846 -0.350721977660851 0.0744953037966416
AT3G56860_at 9.56654288137723 9.55876459698951 9.90652686317551 9.803182303708 10.2708486596716 9.90283526043052 9.74613329312175 9.61985177506804 9.03891081564737 8.90491057267754 9.24468925070125 9.24575219229061 9.48979032202244 9.33961288530947 9.3090398505174 9.56290354243432 9.16891151903734 9.21703930892588 9.01137459073569 0.102394521670732 0.102123856967569 0.104362369219685 0.106509250456909 0.10162352166418 0.104746370688919 0.106464815458762 0.107359735134437 0.107034135728506 0.108786316702376 0.103601835429348 0.104398802116010 0.102925186998022 0.104002255191882 0.106868424161856 0.101100321771409 0.116881993360471 0.108625779214548 0.105643614786336 3 3 - 21061689 21062147 21061926.091 21059864 21063216 - gene protein_coding_gene FALSE TRUE AT3G56860.1|AT3G56860.2|AT3G56860.3 UBA2A; RNA binding|UBA2A; AU-specific RNA binding / RNA binding encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. Along with UBP1 and UBA1a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G41060.2); similar to RNA-binding re (GB:ABD28657.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.342588583829298 4.12713041617251 0.00298152372368481 1 5.42105441466304 18.9504770468220 0.342588583829298 0.0696792700723048
AT1G76580_at 6.3576986498284 6.41267894973333 5.97428767591323 5.89586461914277 7.4060095578164 6.50987791869926 5.39824313020312 4.71959038231067 4.66151871924066 4.51078126773106 5.13483785396299 5.21620371179435 4.70380650470324 4.48777839208484 4.47188615858082 5.20685565614723 5.11028017418342 4.74667756960462 3.92247743005738 0.248410797002431 0.226103683136558 0.237966806624621 0.24000425635867 0.239224245516194 0.235877190254135 0.225575771943130 0.235844002216757 0.236327801217274 0.236744377871779 0.227279041917380 0.225575771943130 0.232961125636739 0.240697938672479 0.23189937567514 0.225575771943130 0.246722606772600 0.226943597370621 0.233659511099005 1 1 + 28742706 28743288 28742994.909 28740222 28743811 + gene protein_coding_gene FALSE TRUE AT1G76580.1 transcription factor Identical to Squamosa promoter-binding-like protein 16 (SPL1-related protein 3) (SPL16) [Arabidopsis Thaliana] (GB:Q700C2;GB:Q8W4C0;GB:Q9C9K0;GB:Q9SMW9); similar to SPL14 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G20980.1); similar to Squamosa promoter-binding-like protein 16 (SPL1-related protein 3) (GB:Q700C2); similar to SBP [Medicago truncatula] (GB:ABE79674.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.622161055915178 4.1266022418836 0.00298376647628829 1 5.4203832140831 10.7091396396104 0.622161055915178 0.195237145294709
AT2G17710_at 9.41329114038472 9.42779406347864 10.1262816794257 10.2421858645737 10.5519637483700 9.91735786351105 7.30819579367366 7.79439438978443 7.40345640629561 7.03058738489298 5.29875533084937 4.39446825057238 7.0641033219425 6.91396534570963 4.02609445286246 7.80454353096561 7.8685980697979 5.61143133440032 6.1873250852731 0.270157882727131 0.266301724522424 0.272943118340980 0.275918882091788 0.281464501197634 0.266017099776310 0.257988569841983 0.262841331356129 0.260917748518546 0.267151243071679 0.266097487193596 0.278778388112588 0.262494860185398 0.256363841711878 0.2904356585928 0.266601574341929 0.269677485415232 0.265810856535035 0.263268815985165 2 2|0 +|/ 7700971 7701606 7701383.7 7700678 7701828 + gene protein_coding_gene FALSE TRUE AT2G17710.1 similar to Os04g0560700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053549.1) 0.486241885645016 4.12602780958751 0.00298620770336641 1 5.41965317422315 15.8459503579626 0.486241885645016 0.139816797142039
AT1G05230_at 4.67758835427028 5.03709307341092 4.29584215101004 4.39981282680468 4.93124925734182 4.54224473276433 4.94094047822374 4.9942857071128 5.37291831944159 5.1145450832269 5.17664897278659 5.22713358455503 5.15247582898453 4.9092644815712 4.81993955710116 4.71914877729996 4.65861719295301 4.51217537199437 5.41157572220235 0.230267603858352 0.203764598485250 0.206871535496398 0.205296986746876 0.212949323564645 0.201788792509738 0.202247408976235 0.209087430941073 0.221625248200238 0.204923861055778 0.210677415985146 0.20414943137077 0.202701151867460 0.205277263576661 0.211337834480152 0.205202181393470 0.230440259932278 0.205612951033587 0.200623959065827 1 1|0 -|/ 1513466 1514050 1513627.9 1512900 1518804 - gene protein_coding_gene FALSE TRUE AT1G05230.1|AT1G05230.2 homeobox-leucine zipper family protein / lipid-binding START domain-containing protein similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G32370.1); similar to homeobox protein (GB:AAB37230.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); similar to homeobox 1 [Picea abies] (GB:AAG43405.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.386471949329382 -4.12577615807501 0.00298727784804273 1 5.41933333499214 9.82568466221533 -0.386471949329382 0.0938690001426898
AT4G31860_at 7.59473510463287 7.5598707893882 8.46247969314167 8.29497115541547 8.51883663962944 7.94425119866162 7.52063323064501 7.31846574798366 6.8329095242561 6.81029836973666 7.05501609706316 6.5746706832435 6.62287639331014 6.97170040080733 6.59676234427751 7.25907055633675 7.17680767967862 6.76464970387532 6.89981892952398 0.183015847550062 0.170010743281634 0.183768553649910 0.187186940143752 0.179967384785851 0.186302098538745 0.174358318070274 0.170010743281634 0.172862243045784 0.174277884372986 0.179219073205370 0.180227838359420 0.177105262071441 0.181952517130390 0.173990870417178 0.1715046477655 0.174490114458153 0.176021522564300 0.170177255861177 4 4|0 -|/ 15406749 15407683 15407086.778 15406445 15409006 - gene protein_coding_gene FALSE TRUE AT4G31860.1|AT4G31860.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G25070.1); similar to protein phosphatase type-2C [Zea mays] (GB:AAG43835.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to Os02g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046088.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G25070.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to putative protein phosphatase type-2C [Oryza sativa (japonica cultivar-group)] (GB:BAD38121.1); similar to Os02g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046088.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.418363539017371 4.12479235789638 0.00299146538966815 1 5.41808285811668 14.7644653650187 0.418363539017371 0.109489697397798
AT1G31350_at 5.29363790290659 6.2602993910936 6.15682655126619 6.65849354197688 6.92820170105942 6.95335859205962 5.6250809706859 6.28251790285899 5.676143497972 5.47650617550567 6.40110635433084 5.99435935581685 6.55757110075758 6.04307438519987 5.80870862836593 6.9284139551282 6.41905859141434 5.76222992073255 5.8754518473584 0.236657258823315 0.229834560720527 0.231387113691170 0.238437919171733 0.235107908299903 0.239130008227807 0.236684167908110 0.238199755778415 0.234460919002149 0.249109051550131 0.226269470835166 0.236983188387706 0.235920274912982 0.232049486297030 0.232750827454169 0.229923649181139 0.244664421225252 0.231826521616384 0.229920905503653 1 1 - 11221541 11222059 11221773.818 11221316 11222767 - gene protein_coding_gene FALSE TRUE AT1G31350.1 F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55270.1); similar to F-box family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53653.1); similar to Os06g0711700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058552.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.686058750446922 4.12449720096158 0.00299272295013206 1 5.41770766088865 12.2274766326119 0.686058750446922 0.220191941006404
AT1G09140_at 7.77241533462333 7.23204988723371 8.61687682244618 8.60754619405503 8.78769729631256 8.25688184440172 8.44191996300833 8.04140578970128 7.14396429177197 7.34653875002075 7.80408857477958 6.98425893594681 8.00284168485861 7.69117469223346 7.8043109583766 8.20828391073633 8.29067640805949 7.9432420096818 8.08574565231704 0.197862548604254 0.195549500760350 0.189760936004490 0.193302263116630 0.197199518705319 0.192214250815066 0.196647759809291 0.189760936004490 0.203024180355440 0.202143402174323 0.198381854614659 0.196718996196126 0.195717130079961 0.193809029752148 0.193524306447254 0.198226425446176 0.192441295176842 0.195353926642576 0.190277514395098 1 0|1 /|- 2943172 2945231 2944561.4 2942566 2945961 - gene protein_coding_gene FALSE TRUE AT1G09140.1|AT1G09140.2 ATSRP30.1 (ARABIDOPSIS THALIANA SERINE/ARGININE PROTEIN 30.1); RNA binding Encodes a serine-arginine rich RNA binding protein involved in regulation of splicing (including splicing of itself). Exists as 3 alternative spliced forms that are differentially expressed. similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays] (GB:AAU29331.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to ASF/SF2-like pre-mRNA splicing factor SRP30 [Zea mays] (GB:AAU29331.1); similar to Os05g0364600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055323.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.505498105563185 4.12045804197479 0.0030099894200177 1 5.41257165131326 15.9028620805748 0.505498105563185 0.148288614193739
AT4G35750_at 10.2335857214963 10.3752321425438 10.3123854926142 10.5300797140627 11.0857930625604 10.8090193828516 9.47403604800261 9.60669713605465 9.01597288745934 9.0906623940205 8.53876262705557 8.901726914377 9.42593597797929 9.01663391054789 8.14484272337978 9.46801283428095 9.06324508528782 8.68201709131026 8.84427610547303 0.161757667083083 0.163619297659662 0.167818238443602 0.164292249367751 0.173271415812256 0.162961532759629 0.166083416955398 0.165407279877652 0.167492976751493 0.16616660901904 0.161730226344196 0.161029666277726 0.157649701322896 0.173175607346526 0.17189866846286 0.162503404983107 0.167242616507932 0.163456192495125 0.163235980469571 4 4|0 -|/ 16940893 16941576 16941255 16940512 16941867 - gene protein_coding_gene FALSE TRUE AT4G35750.1 Rho-GTPase-activating protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G10210.1); similar to OSJNBa0084K11.12 [Oryza sativa (japonica cultivar-group)] (GB:CAD41068.2); similar to Cellular retinaldehyde-binding/triple function, C-terminal [Medicago truncatula] (GB:ABD28324.1); similar to Os04g0561200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053551.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.341720833770457 4.11865654709959 0.00301772478003255 1 5.41028004186542 19.2477457247791 0.341720833770457 0.0695794068659415
AT3G13690_at 8.28617687261937 8.34215261820319 6.65910479458715 7.06168903689332 8.65214376744227 8.51536001930624 8.31947124285535 8.31025668397436 8.78282130080956 8.52932679765978 8.88073128781752 8.82195886100718 8.79138390517617 8.87620425132809 8.92226818204708 8.8754049272509 8.36974359926327 8.4577406226875 9.25459147680162 0.134871223425586 0.139454945876955 0.167252088569027 0.150204734351391 0.140537326473223 0.141782128797975 0.135831547814358 0.138366605511867 0.150566977556327 0.147726365395018 0.137461256568299 0.137025409014714 0.138417931961245 0.138068365812119 0.136121039552489 0.138347875468953 0.147284143798494 0.147559287911480 0.136838284779795 3 0|3 /|+ 4489358 4489874 4489565.444 4485799 4490238 + gene protein_coding_gene FALSE TRUE AT3G13690.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G55200.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G56790.1); similar to Os01g0602800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043500.1); similar to dual-specific kinase DSK1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52649.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.34929517685363 -4.11575627543306 0.00303022290363659 1 5.40658954234235 16.8207990359831 -0.34929517685363 0.0742325959559984
AT2G25310_at 6.47308759062493 6.87196006320264 7.04071302495427 6.7584578490445 7.4613063459439 6.79508625245441 6.4313702937026 6.67456232420395 6.5485152332304 6.08357950778807 7.06423419928216 6.72735317244798 6.96442898088169 7.26613088952638 6.77488710863022 7.12856638417107 6.58759578765337 6.48204299935057 6.1546908529165 0.229596471004985 0.221993992910994 0.218237143664377 0.221372411526225 0.222858535658269 0.257442428826467 0.227119089548913 0.221178672316730 0.23773174507467 0.231274744229700 0.218237143664377 0.221846411579141 0.223030627673525 0.228109165347834 0.22336688331046 0.220012047589206 0.241035978959431 0.231920357713641 0.22649659620651 2 2|0 -|/ 10784520 10786170 10785273 10784180 10786305 - gene protein_coding_gene FALSE TRUE AT2G25310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32130.1); similar to Os06g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058183.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_794143.1); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969) 0.506644437881838 4.1152036483991 0.00303261061903436 1 5.40588617767809 13.3816513704604 0.506644437881838 0.149044057378767
AT1G03310_at 8.89571182920064 8.96120703643863 8.81345558418806 8.7291470714461 9.14899719201607 8.70266505842439 9.88972358005866 9.66917098308287 9.86224408856653 9.97089888029743 9.66324227877957 9.65399835979624 9.45946675899484 9.72704113510924 9.4896641148652 9.42966447676643 9.4333918855798 9.75097853705926 9.62438363807087 0.0942780169348536 0.0880838571626024 0.088639001877809 0.0933704856959536 0.0875290165245698 0.0961791543551914 0.0856453954107782 0.086264033139716 0.0932478570088808 0.0885411977453027 0.0856911811342455 0.0878014840295884 0.0890541487063074 0.0880775288750599 0.0933142585038911 0.0863401917626446 0.0891422572630705 0.0891051920452115 0.088383883176371 1 1 + 816081 816574 816285.455 813471 816749 + gene protein_coding_gene FALSE TRUE AT1G03310.1|AT1G03310.2 ATISA2/BE2/DBE1/ISA2 (DEBRANCHING ENZYME 1); 1,4-alpha-glucan branching enzyme/ alpha-amylase/ isoamylase|ATISA2/BE2/DBE1/ISA2 (DEBRANCHING ENZYME 1); alpha-amylase Encodes a protein with strong similarity to isoamylase (EC:3.2.1.68) however lacks critical residues known to be important for activity. Appears to co localize with ISA1 in the chloroplast isoamylase complex. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. It has been postulated that AtISA2 interacts with AtISA1 to form the Iso1 complex. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to isoamylase-type starch debranching enzyme ISO2 [Zea mays] (GB:AAO17048.3); similar to isoamylase isoform 2 [Pisum sativum] (GB:AAZ81836.1); similar to isoamylase isoform 2 [Solanum tuberosum] (GB:AAN15318.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) -0.374315861476330 -4.11465539070688 0.00303498144760178 1 5.40518832195507 18.7988130313638 -0.374315861476330 0.0881141208342896
AT3G18820_at 9.02092741183122 9.57398410083528 9.81397095454587 9.9591453517211 10.1422529110590 9.21357182238294 8.63689955190513 9.0253190895655 8.85596705787809 8.82473152935274 9.98692792294198 9.33579227156183 9.74110838337003 9.21546080441355 9.17361418004233 9.10577673430684 8.7876021919323 9.05828014099331 8.57788352617381 0.168557956018663 0.168088504792637 0.179735121090812 0.173864373116039 0.174750678523552 0.180442319397814 0.165998016495568 0.170349411996129 0.167971436462404 0.175873379136112 0.176282377544835 0.171008043409732 0.168851346230361 0.176961931419029 0.171472827071108 0.169693792261644 0.172090464906225 0.171765952248995 0.171839803836249 3 3|0 +|/ 6485075 6485797 6485398.444 6484074 6486253 + gene protein_coding_gene FALSE TRUE AT3G18820.1 AtRABG3f/AtRab7B (Arabidopsis Rab GTPase homolog G3f); GTP binding similar to ATRAB7/ATRABG3E/AtRABG3e, GTP binding [Arabidopsis thaliana] (TAIR:AT1G49300.2); similar to unknown [Solanum tuberosum] (GB:ABB02623.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.632831172809995 4.11125406384479 0.00304973422733552 1 5.40085774466782 18.4499744158125 0.632831172809995 0.200345109139203
AT3G20770_at 10.3101570927721 10.4155152388618 10.4413925887808 10.6491018232962 10.9750040316714 10.6504122425692 9.78930386797533 9.77607952075138 9.82969437465227 9.466843724123 9.8463768024427 9.5977678610193 9.9466030898761 9.71487229940763 9.5732266902986 9.93028887207953 9.5856670797463 9.75211305330217 9.71005457332003 0.0938100117120168 0.0916785776681024 0.0947597242223024 0.0936476208131247 0.093743954004906 0.095945960996424 0.0953190297496744 0.0940312049256848 0.0979727978626878 0.0956830157673417 0.0953839267479465 0.0935830703483684 0.089735884803377 0.0960801249733461 0.0962516133970477 0.089735884803377 0.106972277843072 0.0961082155673076 0.089735884803377 3 3 - 7260795 7261268 7261044.091 7260438 7263358 - gene protein_coding_gene FALSE TRUE AT3G20770.1 EIN3 (ETHYLENE-INSENSITIVE3); transcription factor ethylene-insensitive3 Identical to ETHYLENE-INSENSITIVE3 protein (EIN3) [Arabidopsis Thaliana] (GB:O24606;GB:Q8VYW4); similar to EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G27050.1); similar to EIN3-like protein [Cucumis melo] (GB:BAB64344.1); similar to Ethylene insensitive 3 [Medicago truncatula] (GB:ABE82621.1); similar to transcription factor [Cucumis melo] (GB:AAK67355.1); contains InterPro domain Ethylene insensitive 3; (InterPro:IPR006957) 0.340356992989488 4.11022662535727 0.00305420568946439 1 5.39954921423005 20.0819851471114 0.340356992989488 0.0691738647089518
AT4G11960_at 8.17578358263631 8.27476292373123 9.17040134931766 9.04543502819798 8.99744571215883 8.82208640936721 8.97344230388715 8.88544690214236 8.43193356961028 8.44599971592084 8.57957794363059 8.22253378663571 8.7337875722227 8.4219866002295 8.3695073143493 8.8837521221016 9.06902186255688 8.71773345835084 8.46411215890098 0.137940973714605 0.137309143808062 0.137813049923235 0.131802448580034 0.131926745154345 0.141214183336887 0.132981452975586 0.133100827235546 0.141657202427267 0.137162644685220 0.133130120052701 0.128796180039661 0.128019699654435 0.132423295648854 0.141876248631800 0.13205195837788 0.145872255800014 0.134149648880593 0.136981730736747 4 0|4 /|- 7175357 7175908 7175724.5 7174880 7177834 - gene protein_coding_gene FALSE TRUE AT4G11960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22890.2); similar to Os03g0857400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051955.1); similar to Os08g0526300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062297.1); similar to hypothetical protein OSJNBa0003M24.13 [Oryza sativa (japonica cultivar-group)] (GB:AAQ56398.1); contains domain no description (G3D.2.20.25.10); contains domain Zinc beta-ribbon (SSF57783) 0.304436148846715 4.10885271054946 0.00306019600964948 1 5.39779913156974 17.3291435584233 0.304436148846715 0.0437481256321089
AT1G42990_at 9.57134378996678 9.82512696902381 10.0156205810047 10.1067053331563 9.73553896016037 9.44057537785248 8.88272366651231 8.96830702472312 8.6766782649644 8.45376846131771 8.63289227651624 8.91520667964317 8.45945135667555 8.48709638710479 8.10671664192294 8.6852049265362 8.6000723580089 8.44887562234389 7.97814656232743 0.172239163524933 0.168071076564696 0.168725920193276 0.168453239757655 0.169832463856075 0.17750365852222 0.176702626588460 0.171072988486796 0.190367946800890 0.178339674254909 0.177052949932649 0.168071076564696 0.177595834113149 0.181726361370877 0.180856785421663 0.174012957613344 0.192225672884543 0.190930644031415 0.182640713105177 1 1 - 16138508 16139476 16138740.182 16138292 16139903 - gene protein_coding_gene FALSE TRUE AT1G42990.1 ATBZIP60 (BASIC REGION/LEUCINE ZIPPER MOTIF 60); DNA binding / transcription factor AtbZIP60 consists of a bZIP DNA binding domain followed by a putative transmembrane domain. GFP fusions containing the first 260 amino acids (AtbZIP60deltaC) are nuclear-localized. AtbZIP60 is upregulated by the addition of tunicamycin (ER stress response inductor), DTT (inhibitor of disulfide bond formation) and azetin-2-carboxylate (proline analog perturbing protein structure). It is hypothesized that upon ER stress the protein is proteolyzed and the soluble part translocalized into the nucleus. AtbZIP60deltaC can activate the promoters of the ER chaperones BiP1, BiP2 and BiP3 and CNX1 and CNX2 via binding to the ER stress response element (ERSE) and the plant unfolded protein response element(P-UPRE). It can also activate its own transcription. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G10800.1); similar to bZIP transcription factor protein [Capsicum annuum] (GB:AAX20030.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.342571567688863 4.10611786616796 0.00307215752089047 1 5.39431453598755 18.0239780264485 0.342571567688863 0.0707263126862775
AT1G04100_at 4.39650174995374 4.93680116872481 4.88390883348638 5.15266108284678 5.18705096770354 4.82284470447853 4.56643319751057 4.43156805819798 4.52421975470594 4.00644519716651 4.7499327478397 4.33088773159024 4.98905545619866 4.45655232999890 4.94583605204615 4.79064651841685 5.01690470523557 4.63897947038508 4.28553793428022 0.235375766533397 0.228035043895156 0.246475521667874 0.231646057865521 0.245140920450692 0.240384232651843 0.244626639236299 0.239380563864608 0.23592060698641 0.237578888531447 0.233128046222191 0.230706016715670 0.233240428718123 0.231374272121785 0.24182689123278 0.227627471838951 0.243593891998851 0.23172413219307 0.233999638038069 1 1|0 +|/ 1060001 1060957 1060416.4 1059505 1061190 + gene protein_coding_gene FALSE TRUE AT1G04100.1 IAA10 (indoleacetic acid-induced protein 10); transcription factor Auxin induced gene, IAA10 (IAA10). Identical to Auxin-responsive protein IAA10 (Indoleacetic acid-induced protein 10) (IAA10) [Arabidopsis Thaliana] (GB:Q38828); similar to IAA11 (indoleacetic acid-induced protein 11) [Arabidopsis thaliana] (TAIR:AT4G28640.2); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.448286050639183 4.10544922955708 0.00307508957813584 1 5.393462397669 9.30317972295352 0.448286050639183 0.124188401444680
AT1G03630_at 10.8026528365050 10.835871851129 10.4842201609621 10.4121042478175 10.5626670731414 10.5349069940541 11.4995555439401 11.4853567168628 11.4105823653433 11.5242693899150 11.4772202293919 11.7260349503329 11.2103421470142 11.3804028385291 11.7233518246888 11.4954486306613 11.1349892251098 11.4315278436938 11.1189436723155 0.0737647658065958 0.0731508197743044 0.0743098741959788 0.0756511620950838 0.0712757835319337 0.0712757835319337 0.0712757835319337 0.074522678503722 0.0758460279766849 0.0712757835319337 0.0719342838488628 0.072119841297022 0.0729453160029465 0.0757869051071718 0.0727394584173416 0.073251172877452 0.0771891514638454 0.0726532289409352 0.073098328968881 1 1|0 +|/ 908670 909144 908889.4 907641 909375 + gene protein_coding_gene FALSE TRUE AT1G03630.1|AT1G03630.2 POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); NADPH dehydrogenase/ oxidoreductase/ protochlorophyllide reductase|POR C (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE); oxidoreductase/ protochlorophyllide reductase Encodes for a protein with protochlorophyllide oxidoreductase activity. The enzyme is NADPH- and light-dependent. Identical to Protochlorophyllide reductase C, chloroplast precursor (EC 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) (PORC) [Arabidopsis Thaliana] (GB:O48741); similar to PORA (Protochlorophyllide reductase A), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT5G54190.1); similar to PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT4G27440.2); similar to Protochlorophyllide reductase, chloroplast precursor (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (GB:Q9SDT1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Light-dependent protochlorophyllide reductase; (InterPro:IPR005979); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.280617524731191 -4.10106589226167 0.00309438544970049 1 5.38787417860506 22.2265068549027 -0.280617524731191 0.0147619143476349
AT4G14510_at 4.18214920316452 4.37661203829491 4.16035274728766 4.06276120224755 4.82142304153917 4.12796343050385 5.14071370327652 5.12836005616611 4.66741138744732 5.29524996478653 4.63599870980367 4.91548356103158 4.55493814937673 4.55707517907781 4.8646803914237 4.82498811126233 3.75554604244531 4.47056641228819 5.21969865915491 0.218843538548738 0.216411287577301 0.218676187338670 0.216748203325004 0.221760675050629 0.221449822142382 0.21983618747868 0.217204974694724 0.220215288486777 0.218518932269055 0.216411287577301 0.218637990180637 0.219506082109453 0.220866408925491 0.216411287577301 0.217374820608647 0.229610488574322 0.216411287577301 0.220577688352418 4 4|0 -|/ 8337431 8338261 8337927.3 8337272 8341155 - gene protein_coding_gene FALSE TRUE AT4G14510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to CRS1/YhbY domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94534.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.451105372852608 -4.0985695602449 0.00310543245830936 1 5.3846901786734 9.31664004783583 -0.451105372852608 0.12579285644599
AT1G01790_at 9.81067925406159 9.77773987919993 9.04105717719399 9.0682669788412 9.72977398718773 9.09263052667498 10.4459243103556 10.1837032440923 10.3213630145956 10.5269908838561 10.38103828331 10.6737312003881 10.4232215505773 10.4881671073234 10.3603224491227 10.8139848938889 9.8491576343435 10.3531540881638 10.5627024932066 0.132610810432768 0.127346344135405 0.142121426361570 0.133535470569574 0.129836715235354 0.14087781252641 0.132224255445349 0.129985458720549 0.140391164103231 0.129694791239993 0.136323945118058 0.127346344135405 0.127346344135405 0.13006036028009 0.138447651004389 0.127346344135405 0.143468687925814 0.136462374442395 0.127346344135405 1 1 + 289718 290801 290276.8 286198 291089 + gene protein_coding_gene FALSE TRUE AT1G01790.1 KEA1 (K EFFLUX ANTIPORTER 1); potassium:hydrogen antiporter K efflux antiporter KEA1 similar to KEA2 (K+ efflux antiporter), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT4G00630.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); similar to Os04g0682800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054299.1); similar to TrkA-N [Medicago truncatula] (GB:ABD28435.1); contains InterPro domain Potassium efflux system protein; (InterPro:IPR004771); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain TrkA-N; (InterPro:IPR003148) -0.437042242057952 -4.09781979598977 0.00310875862837484 1 5.38373366595418 20.0878215604221 -0.437042242057952 0.119462512695393
AT1G32410_at 8.62181651399316 8.4171014082196 8.74542846461412 8.76871764889477 9.24474617426628 8.89864966562225 8.79178168462057 8.84607140500187 8.97926652251971 8.48593469902481 9.24140696892982 8.96370821193212 9.44845528206565 9.2166872357251 9.16535994853277 8.91503800792694 8.76616227462882 9.1290495046085 8.54063240262147 0.102666336777485 0.102386112287689 0.105135077792559 0.107569300566333 0.109201148207998 0.111259936714562 0.102858322150046 0.102386112287689 0.108561667948992 0.111942244870092 0.102784559920998 0.102386112287689 0.104435738687264 0.102386112287689 0.108297450854646 0.103116101174706 0.109398184265490 0.104936261782554 0.105187331378776 1 1|0 +|/ 11694380 11695207 11694937.3 11693779 11695546 + gene protein_coding_gene FALSE TRUE AT1G32410.1|AT1G32410.2|AT1G32410.3|AT1G32410.4|AT1G32410.5 vacuolar protein sorting 55 family protein / VPS55 family protein similar to vacuolar protein sorting 55 family protein / VPS55 family protein [Arabidopsis thaliana] (TAIR:AT3G11530.2); similar to Vacuolar protein sorting 55 [Medicago truncatula] (GB:ABE93067.1); contains InterPro domain Vacuolar protein sorting 55; (InterPro:IPR007262) 0.341157478314472 4.09693887604925 0.00311267151776140 1 5.38260970734016 17.6789614393286 0.341157478314472 0.0703336453059438
AT1G73790_at 6.11798657016323 6.60456368795037 5.89968873427445 6.20967299521385 6.85894356534847 6.55950658449297 5.71908641130734 6.26389597492662 5.29884654111163 5.24292985137888 6.30964408843361 6.1772183554765 5.8474650671073 6.46027130803909 6.32797088087402 6.38726622357059 6.09818137365278 5.86314790086615 5.63237513058372 0.192822546767602 0.192822546767602 0.207089580833118 0.198449206438550 0.197993631206205 0.203917402884261 0.193875593759054 0.194175401589644 0.217699441030481 0.201770513097291 0.196456278563180 0.197176257053370 0.196199588189171 0.206413876875350 0.203128194476915 0.192822546767602 0.203528053027860 0.198069585841783 0.201619409489279 1 1 + 27748682 27748838 27748750.818 27748333 27749038 + gene protein_coding_gene FALSE TRUE AT1G73790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09550.1); similar to Os03g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050438.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89222.1); similar to Os03g0824000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051747.1) 0.499040808736654 4.09690974928649 0.00311280098368481 1 5.38257254245432 12.0668078108483 0.499040808736654 0.146773158367016
AT4G22540_at 9.07447549006855 9.22275817578246 9.0085325199986 8.95581445451686 9.54062412151275 9.5145039315759 8.57820699405709 8.33783083752346 8.56093600804111 8.69340140554542 9.16484955897418 8.6931143153517 8.87797510613564 9.11386424191806 8.8866101354846 8.35866297588177 8.63659410843796 8.74102976158573 8.66125516914578 0.120561839778767 0.112782933341443 0.122789142474443 0.113356073941537 0.117550711726086 0.124638463613279 0.117873470886117 0.124420997578255 0.119315066942098 0.113854183205670 0.111946163000792 0.114873362631521 0.111235397694469 0.122526859313398 0.118795293063176 0.116351277586898 0.127123396857069 0.114965021019388 0.116223476222355 4 4|0 -|/ 11860984 11862041 11861439 11860455 11866375 - gene protein_coding_gene FALSE TRUE AT4G22540.1|AT4G22540.2|AT4G22540.3 oxysterol-binding family protein|oxysterol binding similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol binding [Arabidopsis thaliana] (TAIR:AT4G12460.1); similar to putative oxysterol-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK15443.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993)|similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol binding [Arabidopsis thaliana] (TAIR:AT4G12460.1); similar to putative oxysterol-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK15443.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648) 0.311053773551785 4.09660454593193 0.00311415793282701 1 5.38218310322491 17.7529025088204 0.311053773551785 0.0499255687671852
AT3G53430_at 10.5048045252059 10.56669820907 10.0558533789227 10.1804950682351 10.1390641516417 9.93297732357064 10.6429085643768 11.0211907165812 10.5363282318878 10.3155139973917 10.3674878813169 10.4436167946606 10.2783097173569 10.2013712670848 10.6677237865746 10.0251084987361 10.0319031673930 10.0912071484124 10.2460591115815 0.09499072868807 0.0925513788574963 0.0978314259684404 0.09639710936716 0.0952701929075368 0.0987724714674332 0.0991739535167986 0.0952921024195228 0.0944345868350314 0.094910768760045 0.096636996488656 0.0955072973762025 0.0945005530911203 0.0933266744412995 0.09419220868323 0.095797024611545 0.0984934827880572 0.0933432521463798 0.0972978406657644 3 3 - 19820940 19821342 19821153.455 19820665 19821447 - gene protein_coding_gene FALSE TRUE AT3G53430.1 60S ribosomal protein L12 (RPL12B) Identical to 60S ribosomal protein L12-2 (RPL12B) [Arabidopsis Thaliana] (GB:Q9LFH5); similar to 60S ribosomal protein L12 (RPL12A) [Arabidopsis thaliana] (TAIR:AT2G37190.1); similar to 60S ribosomal protein L12 [Capsicum annuum] (GB:AAR83868.1); similar to Os02g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047832.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911) -0.354714552072182 -4.09559036268818 0.00311867159277730 1 5.38088889089534 20.6951530653566 -0.354714552072182 0.0783415130028001
AT3G62330_at 6.3243720931959 6.49774964634081 6.89242725307634 6.63068905570726 7.17498574570636 6.94809998532113 5.9277285229485 5.49757756629613 6.7400386133283 6.51701253513697 6.09053889676973 5.98493070380775 6.14982686354131 6.5417245772413 6.46027844471414 6.67396218753354 7.06890437032034 6.8699008590588 6.35664769036362 0.210235430724438 0.205751814175549 0.212950468169859 0.208271319907866 0.207233316173958 0.209749124562631 0.209411470221295 0.209024928443601 0.210849339668488 0.209148287304756 0.208960409302878 0.207654051861879 0.213291507727411 0.204000861590964 0.224965768982479 0.206122332521237 0.204000861590964 0.216871351522509 0.207736066638402 3 3|0 -|/ 23074339 23075054 23074606.4 23073794 23076394 - gene protein_coding_gene FALSE TRUE AT3G62330.1 zinc knuckle (CCHC-type) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22040.1); similar to Zinc finger, CCHC-type [Medicago truncatula] (GB:ABE87769.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.395901151343919 4.09274681355609 0.00313136430796585 1 5.37725925579736 12.9956577214822 0.395901151343919 0.100173638534978
AT2G37710_at 11.3837983957581 11.6314007055886 11.9224725672042 11.9737848407782 11.0216207466488 10.8163210946795 10.1632756462978 10.3599119596449 10.1893884426684 9.73757134595416 10.1325653224304 10.3158704210078 9.97681480398252 10.3615277316412 9.5811278055489 9.93868088691485 9.40527543323364 10.1917569239432 9.68261932535556 0.108595845146925 0.102832526835116 0.103689437676184 0.105266468651461 0.101700190020267 0.115248388321901 0.102038996697602 0.102060143493101 0.110876554579842 0.104072730007116 0.102906806705475 0.101700190020267 0.102865014082172 0.107794339187795 0.102472977589636 0.104239256766509 0.116667333495907 0.109702455118217 0.104269785391495 2 2 - 15822016 15822453 15822282.636 15821796 15824082 - gene protein_coding_gene FALSE TRUE AT2G37710.1 RLK (RECEPTOR LECTIN KINASE); kinase Induced in response to Salicylic acid. similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G02410.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G02420.1); similar to receptor kinase Lecrk [Gossypium hirsutum] (GB:AAP47579.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.333522923466861 4.09214401211536 0.00313406212424717 1 5.37648963371281 21.0879793049486 0.333522923466861 0.0658412480915991
AT1G50460_at 5.31517930401845 5.39283235123304 5.7233833282195 5.47950476656442 5.94253023145168 6.08465529881744 5.29882837064946 5.26897122669503 5.60048097431565 4.95755045127307 5.76647738175022 5.0807926864116 5.38868516234478 5.23631398559821 4.83699744622184 5.32396845434357 5.44755346935508 5.81487838345944 5.12435268167988 0.202429378319079 0.202727144145224 0.202429378319079 0.207682920061234 0.211387786285588 0.203299908651851 0.204159630971545 0.210154754293350 0.221145741220001 0.214048000907630 0.215909006377419 0.207171652217195 0.208938706240273 0.211619513509585 0.225330647603616 0.205680823191462 0.209121056952858 0.209349581354994 0.209525140975382 1 1 + 18700285 18701048 18700647.364 18697352 18701327 + gene protein_coding_gene FALSE TRUE AT1G50460.1 hexokinase, putative Identical to Hexokinase-3 (EC 2.7.1.1) [Arabidopsis Thaliana] (GB:Q9LPS1); similar to ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT3G20040.1); similar to hexokinase 6 [Nicotiana tabacum] (GB:AAS60198.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) 0.311531297605164 4.085908437898 0.00316211568301146 1 5.36852474100175 10.8579454798437 0.311531297605164 0.0509256484819065
AT1G54030_at 8.45067411504445 8.56414566305204 7.75508644514787 7.61071814624588 8.09378064139853 7.51512128970918 7.64994854828555 7.49977661698775 8.10779470755201 7.49800961744033 7.28652679109365 7.86966984235849 7.45061202092545 7.49095140978307 7.49732372026682 7.15302181386704 6.35690875768283 7.19098013695316 7.83106983677192 0.163283130902304 0.162123092203658 0.164957781233652 0.171884217792501 0.165894871054705 0.167260949812159 0.160175046229160 0.165278631020643 0.174343482945044 0.170273294042610 0.166466924827502 0.161212776213102 0.158239586997272 0.173371045536500 0.162270607858992 0.169766594531655 0.176516281224907 0.168619793996875 0.161327356468453 1 1 + 20172475 20173020 20172768.545 20171297 20173268 + gene protein_coding_gene FALSE TRUE AT1G54030.1 GDSL-motif lipase, putative similar to ESM1 (EPITHIOSPECIFIER MODIFIER 1), carboxylic ester hydrolase [Arabidopsis thaliana] (TAIR:AT3G14210.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.411375840427759 -4.08195254961443 0.00318005232967462 1 5.36346829303982 15.4420517826694 -0.411375840427759 0.108227154297504
AT3G04870_at 9.18226137910768 9.28472384153961 9.26762473054608 9.28906210466721 9.54624185095894 9.3115373403384 10.2102070458191 10.1088706593774 9.39392592680947 9.66261746439115 9.15910464208685 9.16340601868619 9.27922983632254 9.2159967773432 9.04108520386773 9.5530464276131 9.22755469676076 9.20795271953826 9.44925857767575 0.124242760603664 0.132191574056787 0.132418993530786 0.125451598035692 0.128870018541163 0.138563875129128 0.13451994196151 0.134304660019368 0.128925982202989 0.131222150170113 0.123777490049698 0.125860278467234 0.131601334981059 0.125737762379698 0.124867388074769 0.125555262344012 0.135970132755641 0.12672907696413 0.125503844970582 3 3 + 1345435 1346147 1345746.727 1342614 1346393 + gene protein_coding_gene FALSE TRUE AT3G04870.1|AT3G04870.2 ZDS (ZETA-CAROTENE DESATURASE); carotene 7,8-desaturase Involved in the biosynthesis of carotenes and xanthophylls, reduces zeta-carotene to lycopene. Identical to Zeta-carotene desaturase, chloroplast precursor (EC 1.14.99.30) (Carotene 7,8-desaturase) (ZDS1) [Arabidopsis Thaliana] (GB:Q38893;GB:Q9CAV3;GB:Q9LLY1); similar to PDS3 (PHYTOENE DESATURASE) [Arabidopsis thaliana] (TAIR:AT4G14210.1); similar to zeta-carotene desaturase [Citrus unshiu] (GB:ABC33728.1); similar to zeta-carotene desaturase precursor (GB:AAA91161.1); similar to zeta-carotene desaturase [Citrus unshiu] (GB:BAB68552.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.306955587090717 -4.07766609702395 0.00319961082513919 1 5.35798627801861 18.8914941339957 -0.306955587090717 0.0478061395280333
AT4G26070_at 8.34204709800327 8.59904216370787 8.1904024062139 8.10996434116578 7.81298570092076 7.36537872381727 6.15699334712686 6.19542792559372 7.94673948116469 5.96270444580308 6.66190716650187 7.93951811974831 6.5317353734966 7.14985995912349 6.33636285820419 6.80770626872232 6.20888704634063 7.68760057957995 6.22274076075982 0.226393363535469 0.230301415212506 0.225407794602192 0.23703060124446 0.234860022657823 0.226852110161893 0.241852422584639 0.229011913288329 0.232077450463782 0.228767586888119 0.229203071944182 0.228975186584985 0.231224927215432 0.231982040581012 0.227886993044551 0.226951753767176 0.239159894701656 0.225407794602192 0.235236020208876 4 4|0 +|/ 13218750 13219659 13219271.125 13217658 13219942 + gene protein_coding_gene FALSE TRUE AT4G26070.1|AT4G26070.2|AT4G26070.3 MEK1 (mitogen-activated protein kinase kinase 1); MAP kinase kinase/ kinase Member of MAP Kinase Kinase. Likely functions in a stress-activated MAPK pathway. Can phosphorylate the MAPK AtMPK4, in response to stress. Gets phosphorylated by MEKK1 in response to wounding. Identical to Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (NMAPKK) (AtMEK1) (MKK1) [Arabidopsis Thaliana] (GB:Q94A06;GB:O04440;GB:O04661); similar to ATMKK2 (MAP KINASE KINASE 2), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G29810.1); similar to double MYC-tagged mitogen activated protein kinase kinase 1 [synthetic construct] (GB:ABF55661.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to Mitogen-activated protein kinase kinase 1 (EC 2.7.12.2) (MAP kinase kinase 1) (NMAPKK) (AtMEK1) (MKK1) [Arabidopsis Thaliana] (GB:Q94A06;GB:O04440;GB:O04661); similar to ATMKK2 (MAP KINASE KINASE 2), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G29810.1); similar to double MYC-tagged mitogen activated protein kinase kinase 1 [synthetic construct] (GB:ABF55661.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.37551205082182 4.07514736025577 0.00321116350264872 1 5.35476355152739 14.4096179136723 0.37551205082182 0.0906426511848567
AT4G36800_at 7.97343753338513 8.46050052940365 8.74584623245067 8.89085748595637 9.39320397421153 8.6192068805298 9.27219619892404 8.87513734468853 7.76583686821069 7.97520444783568 9.26172451981379 8.86601578146404 8.88825188212481 8.91086735508759 9.00363718937884 9.24322217042573 8.58418396044125 8.28552005544133 8.32650595209613 0.181074444686112 0.175548301188000 0.176525180910483 0.174057450581051 0.170329339122544 0.184757122974530 0.175912623400069 0.177699157837780 0.191946618138958 0.176283917017866 0.174019297431898 0.176231423352118 0.177247259178435 0.179841915550353 0.17816530006469 0.171462567741 0.186121346231127 0.173260823936490 0.173429009999532 4 4|0 -|/ 17341533 17342092 17341830.75 17340955 17342736 - gene protein_coding_gene FALSE TRUE AT4G36800.1 RCE1 (RUB1 CONJUGATING ENZYME 1); small protein conjugating enzyme RUB1 conjugating enzyme that conjugates CUL1 and is involved in auxin response and embryogenesis. RCE1 protein physically interacts with RBX1, which may be the E3 for CUL1. Identical to NEDD8-conjugating enzyme Ubc12 (EC 6.3.2.-) (RUB1-conjugating enzyme 1) (RUB1-protein ligase 1) (RUB1 carrier protein 1) (RCE1) [Arabidopsis Thaliana] (GB:Q9SDY5;GB:O23202); similar to RUB1-conjugating enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G18600.1); similar to RUB1-conjugating enzyme-like protein [Solanum tuberosum] (GB:ABA46772.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.562436424955714 4.07453681990297 0.00321397058263471 1 5.35398220042341 17.2302700826035 0.562436424955714 0.174346528407515
AT1G72630_at 7.2681410470365 7.96015672959954 6.95446608359042 7.2022246737004 8.57337107392248 8.28610343743542 7.17987439051189 6.52496077172436 6.90792282341065 6.684102197888 7.95693013161648 7.9996479044349 6.97909334913523 7.60623095600877 7.04065083582381 7.57794617385418 6.9353895570757 6.9093158033607 6.6775955705872 0.221086834786295 0.205371444659731 0.205371444659731 0.209255262572891 0.216034905634704 0.209874214246426 0.208364307755313 0.211916198033369 0.215694088434874 0.205757604598992 0.207665486893925 0.205371444659731 0.211223701405077 0.225564862272907 0.205371444659731 0.205371444659731 0.212834868983801 0.216465285720689 0.207783425614679 1 1 + 27348668 27348961 27348844.818 27347932 27349238 + gene protein_coding_gene FALSE TRUE AT1G72630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17455.1); similar to Os11g0621500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068300.1); similar to hypothetical protein [Oryza sativa] (GB:AAD27669.1); contains InterPro domain Protein of unknown function DUF1313; (InterPro:IPR009741) 0.569934237031274 4.073258571751 0.00321985609027987 1 5.35234612980223 14.5597576690446 0.569934237031274 0.177472140710743
AT1G32520_at 7.84493326784884 7.92974310747308 7.86967779527753 8.2691027990873 8.48895321645154 7.76551972620223 9.17429724910012 9.5730832058531 8.13068329133821 9.31517195564547 8.17939211729169 8.43207726714884 8.75695892550985 8.35757537292077 7.51765349538806 9.01118026164996 8.58219731350679 8.52959457444816 9.37669225321182 0.218120072632353 0.212429434732574 0.235195454189542 0.211240653504117 0.211240653504117 0.222244802766351 0.218516469438267 0.228585681809439 0.249384026575624 0.213420834290851 0.214551924589716 0.211240653504117 0.215272874805927 0.225741734804093 0.224344606604314 0.212484761636400 0.231042113505011 0.229252054244742 0.211240653504117 1 1 - 11758406 11759084 11758655.6 11758195 11759260 - gene protein_coding_gene FALSE TRUE AT1G32520.1 similar to Os11g0220300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067521.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61574.1) -0.526110662031476 -4.07256092228144 0.00322307318081198 1 5.35145306766566 17.0452527122691 -0.526110662031476 0.159465839404956
AT3G54170_at 5.57887074164968 5.60376437556513 4.61673702401211 4.81754254627654 5.47551327532892 5.21289344062603 5.43609034296307 5.43409450039655 5.20797865241811 4.97450062462415 4.9669657699118 5.09882487377596 5.10194945842224 4.83755852225039 4.80021222540705 4.95552295879325 4.47532346461784 4.93316860746098 4.97412120161186 0.229955484149047 0.228572200295078 0.241091421039208 0.229921628815044 0.231199696176947 0.243881335715992 0.226837744143313 0.228737685730812 0.246907145256273 0.234211340541714 0.226837744143313 0.234984849961971 0.232578899738103 0.233166247384702 0.229743105181037 0.231745891313396 0.230430323401621 0.239914824855601 0.229726564574739 3 0|3 /|+ 20068848 20070284 20069546.778 20067683 20070500 + gene protein_coding_gene FALSE TRUE AT3G54170.1 ATFIP37 (ARABIDOPSIS THALIANA FKBP12 INTERACTING PROTEIN 37) Encodes protein that binds FKBP12. This interaction is disrupted by FK506 but not by cyclosporin A. Identical to FKBP12-interacting protein of 37 kDa (FIP-37) (Immunophilin- interacting protein AtFIP37) (FIP37) [Arabidopsis Thaliana] (GB:Q9ZSZ8); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65010.1); similar to FKBP12-like protein [Mirabilis jalapa] (GB:AAT07458.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.319271421527071 -4.07255477166683 0.00322310155860714 1 5.35144519388318 10.2461337281679 -0.319271421527071 0.0573737446555153
AT2G03710_at 8.04501347972056 7.97762842057614 8.55154826683372 8.69652241364003 8.66356842217355 8.44706058047764 9.49531944873749 9.51704982384247 8.30101791062926 8.3320058801448 7.37133571728222 7.10047741938204 7.8148031654414 8.23420279292098 6.71048960770154 8.74980473370981 8.57623729751194 7.52481974350052 7.97117896815026 0.145025279956408 0.143870543234579 0.156333517129830 0.145840101426731 0.144127858400574 0.152826643189538 0.154288559929030 0.149657202344425 0.145790606943343 0.149550230214561 0.149299656148504 0.14284449167067 0.149526672297326 0.149190686558075 0.147179554272408 0.143615692372542 0.159802456899595 0.152324024817394 0.147647796082413 2 0|2 /|+ 1130894 1131593 1131325 1129265 1131835 + gene protein_coding_gene FALSE TRUE AT2G03710.1|AT2G03710.2|AT2G03710.3 SEP4 (SEPALLATA4); DNA binding / transcription factor|SEP4 (SEPALLATA4); DNA binding This gene belongs to the family of SEP genes. It is involved in the development of sepals, petals, stamens and carpels. Additionally, it plays a central role in the determination of flower meristem and organ identity. Identical to Agamous-like MADS-box protein AGL3 (AGL3) [Arabidopsis Thaliana] (GB:P29383;GB:O04729;GB:Q41252;GB:Q7XJL0;GB:Q8VZR9); similar to SEP1 (SEPALLATA1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G15800.1); similar to MADS-box protein AGL3-a [Brassica oleracea var. botrytis] (GB:CAD48302.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.305103741199032 -4.07055716019693 0.00323233232984658 1 5.34888758436427 16.6550499716616 -0.305103741199032 0.0467267153966499
AT1G74380_at 6.41782028743521 6.56320821460313 5.51366617521508 5.76856578058594 5.63834589719987 5.68061734037771 6.74640516007502 7.16811441136176 6.56036944961224 6.37338762240466 7.19806572596118 7.18311401347795 6.73439866267681 7.24005406194693 6.88545812018044 6.47882800218926 6.06039624451255 6.21278169666937 6.32701270501263 0.140360915924624 0.142908645464611 0.146790228156232 0.133636364998202 0.138372775196667 0.142530562261448 0.147880255200766 0.135219441407941 0.157861395061189 0.141825624047013 0.137945061227936 0.140006175926426 0.132671323744826 0.141139615322344 0.147754629820525 0.140974695603639 0.151653186624235 0.148575172002296 0.140110408963649 1 1 + 27964354 27964841 27964591.909 27963239 27965115 + gene protein_coding_gene FALSE TRUE AT1G74380.1 galactosyl transferase GMA12/MNN10 family protein Identical to Putative glycosyltransferase 5 (EC 2.4.-.-) (AtGT5) (GT5) [Arabidopsis Thaliana] (GB:Q9CA75); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT1G18690.1); similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT5G07720.1); similar to putative glycosyltransferase [Nicotiana benthamiana] (GB:CAI11458.1); similar to putative glycosyltransferase [Solanum tuberosum] (GB:CAI11457.1); similar to putative glycosyltransferase [Lotus japonicus] (GB:CAI11456.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.372353873207749 -4.07041072298245 0.00323301011434586 1 5.34870006891268 12.7717897375042 -0.372353873207749 0.0892091379922355
AT1G01440_at 4.98610723258772 4.89398687809118 5.25111273362634 5.0870782573727 5.36972243933454 5.13348641332437 4.98685900429393 4.68148157246823 4.94149745265225 4.54976817276202 4.66726991892994 5.23173897113927 5.15407656884818 5.52635263973291 4.68243135630743 5.2984066740575 5.14557084689153 4.84192397123244 4.61147012365757 0.201711641058631 0.195174145148458 0.194107650076378 0.195311914539147 0.190180201110392 0.201784555026415 0.190180201110392 0.190941992288703 0.196290956213856 0.192438749535427 0.199451646694277 0.19037517835014 0.191828626630798 0.197339132919600 0.199926081283746 0.190289998334352 0.190246589905541 0.191865695420074 0.194126055528224 1 1|0 -|/ 160162 160786 160442.7 159856 162572 - gene protein_coding_gene FALSE TRUE AT1G01440.1 extra-large G-protein-related similar to extra-large G-protein-related [Arabidopsis thaliana] (TAIR:AT4G01090.1); similar to unknown [Striga asiatica] (GB:ABE66402.1) 0.345400370544672 4.06803449894946 0.00324402975031862 1 5.3456567577973 9.93342095876222 0.345400370544672 0.0743241686785689
AT4G27470_at 7.06274211396947 8.25229012903977 7.41702034839319 8.2257765901932 8.36143482774836 8.27529806384372 6.07867043294001 6.90724436142377 7.15907949193132 6.2998217401933 7.2001652610387 6.77232500278732 7.64670367643999 7.68500009020042 6.14648657965093 7.59351863798319 7.65417746358576 7.62895567451293 6.28248185134573 0.197267402959079 0.189523265600252 0.194407768849395 0.200659371864827 0.198603187934170 0.204703110780194 0.199324029236794 0.188923256180243 0.192882469891550 0.20079499409743 0.190362669126752 0.194105436532903 0.191498771221794 0.191291209718406 0.199179769113495 0.188923256180243 0.204271710116466 0.192582305727357 0.193293872408116 4 4 + 13735766 13736206 13736001.636 13735005 13736524 + gene protein_coding_gene FALSE TRUE AT4G27470.1 zinc finger (C3HC4-type RING finger) family protein similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to putative RING protein [Populus x canescens] (GB:AAN05420.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.852550609326407 4.06504015978814 0.00325797314085779 1 5.34182042695096 14.5082483964931 0.852550609326407 0.287659613811003
AT3G61460_at 8.50435884669718 8.83527668612857 8.35550238414734 8.58174087203292 9.07738071291888 9.08295754256743 8.03884322801043 8.21070230367818 8.6557959196751 8.15000267000275 9.00963235913871 9.08267640006894 8.8903751780178 8.49877078146586 9.19170169938291 8.73484931475528 8.09233118951534 8.372405528291 8.44646987225377 0.185706504481966 0.185634762605824 0.182988596685895 0.184950994935199 0.184002534816989 0.188070328742065 0.180243599173624 0.179225417723913 0.195706570394386 0.183453615442143 0.174624331978696 0.172986996163286 0.170847370990229 0.189951640766423 0.174075323290909 0.171049705592032 0.190481827597582 0.185306643591459 0.182266968949622 3 3 - 22752688 22753160 22752936.545 22752486 22753259 - gene protein_coding_gene FALSE TRUE AT3G61460.1 BRH1 (BRASSINOSTEROID-RESPONSIVE RING-H2); protein binding / zinc ion binding Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G41400.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28706.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.34688504873683 4.0622773897395 0.00327089510539179 1 5.33827941836148 17.1616031355093 0.34688504873683 0.0754838006367334
AT1G20020_at 12.5258582443515 12.7170754541749 12.6112942832328 12.5285435520035 12.8388544161244 12.5893698776692 12.5334159168111 12.5726284439818 12.3611462655759 12.4509149378913 13.0913405084785 13.0420782966753 12.9851398615082 13.0944753864469 12.8529365060097 12.8458109856798 12.5410205809530 12.8574428536950 12.1891953836421 0.082820229806541 0.0803525748348922 0.083546823175932 0.0826146104741485 0.0824122364703795 0.0846891769665066 0.084364059532716 0.0821802256443093 0.0914583168211609 0.0803525748348922 0.0803525748348922 0.0807989038257789 0.0818435857240442 0.0863816776339923 0.0836544522579323 0.0805600513459883 0.0893722180609116 0.0844006906011261 0.0803525748348922 1 0|1 /|+ 6943969 6944580 6944263 6942708 6945007 + gene protein_coding_gene FALSE TRUE AT1G20020.1|AT1G20020.2|AT1G20020.3 ATLFNR2 (LEAF FNR 2); NADPH dehydrogenase/ oxidoreductase|ATLFNR2 (LEAF FNR 2) Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma similar to ATLFNR1 (LEAF FNR 1), NADPH dehydrogenase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G66190.1); similar to chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] (GB:CAB71293.1); contains InterPro domain Ferredoxin--NADP reductase; (InterPro:IPR012146); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709)|similar to ATLFNR1 (LEAF FNR 1), NADPH dehydrogenase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G66190.1); similar to chloroplast ferredoxin-NADP+ oxidoreductase precursor [Capsicum annuum] (GB:CAB71293.1); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.317399722077681 4.06153654165169 0.00327436950027114 1 5.33732966012325 25.2383964326106 0.317399722077681 0.0566583881920866
AT3G61070_at 9.06484250691892 9.27660784811433 9.54088844845532 9.39947325569478 9.64110974213056 9.48763374592597 9.18467327018884 9.0337981385325 7.82010849882833 8.43633246187595 8.28343509511477 7.88497788210447 8.74441026830921 8.20265864266079 7.9543450813663 8.33272807859418 8.48546782103174 8.4246087822911 7.82996208867253 0.170161902124101 0.177563062826041 0.178836834308586 0.176264263614003 0.180273607586171 0.183971078321653 0.174100701118811 0.177697309137409 0.190077185076472 0.179884720811607 0.174835992386253 0.171612525979707 0.178906737008941 0.176566349404485 0.175900666418461 0.175762094362156 0.181086460051652 0.192762681159225 0.184317750477779 3 3|0 -|/ 22616006 22616983 22616466.444 22615577 22617753 - gene protein_coding_gene FALSE TRUE AT3G61070.1|AT3G61070.2 peroxisomal biogenesis factor 11 family protein / PEX11 family protein|PEX11E member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to PEX11D [Arabidopsis thaliana] (TAIR:AT2G45740.3); similar to unknown [Lycopersicon esculentum] (GB:AAF75750.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.318786898544069 4.06051146435705 0.00327918337375709 1 5.33601536851146 17.4875683559417 0.318786898544069 0.0576978375813804
AT1G24120_at 7.35952875459695 7.34620770876373 6.65743778164914 7.03867934316364 7.5539962331089 7.53963684167769 8.03593459292056 7.85558908895217 7.91253818486967 7.7586413742515 7.86154041476458 7.68051204664095 7.2727146033064 7.60409032119446 7.61879699291664 7.18660965301358 7.23608247956513 7.56893679311344 7.53801787150286 0.15173147925358 0.148403293221689 0.151234833310254 0.140775768690703 0.148857333780423 0.150701824471458 0.142513258249573 0.154171928999980 0.155981836696287 0.146392534941579 0.142796418525168 0.142079631744708 0.149492083381109 0.148436204426832 0.145690835159031 0.147445076898591 0.152688795846189 0.143885925237867 0.151798427055367 1 1|0 -|/ 8529421 8530065 8529723.3 8529132 8532200 - gene protein_coding_gene FALSE TRUE AT1G24120.1 ARL1 (ARG1-LIKE1); heat shock protein binding / unfolded protein binding encodes a DnaJ-like protein similar to ARG1 and ARL2 that are both involved in root and hypocotyl gravitropism response. However, null mutation in this gene does not result in defects in gravitropism. Gene is expressed in all tissues examined. Identical to Chaperone protein dnaJ 16 (Protein ARG1-LIKE1) (AtARL1) (AtJ16) (AtDjB16) (ATJ16) [Arabidopsis Thaliana] (GB:Q8VXV4;GB:O48678); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G59980.1); similar to ARG1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37859.1); similar to Os02g0741100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048078.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.342308108442728 -4.05658258837478 0.00329770404952270 1 5.33097633746675 15.0434060714070 -0.342308108442728 0.0730637674761377
AT3G16570_at 8.72342717842263 8.66213703932473 8.94651013025334 8.98314474637712 9.030272244889 9.6926588553416 8.97486679356088 9.5314134027097 9.63921432810703 9.17106973908665 10.6913440126885 10.1453193549087 10.4564155196610 10.2635559269309 9.94994824353999 9.67013398945849 10.0170032123751 9.92412114368189 9.16775415588088 0.117524240895944 0.126198355624943 0.123223019947575 0.126195478917931 0.126079811740049 0.120343475673625 0.120961378753609 0.116366726525916 0.123199580032413 0.121419244806215 0.117658587902584 0.117852896057348 0.12317338880834 0.120438588032537 0.122681854750489 0.117541475893740 0.117237201800224 0.120520003761685 0.12559578095599 3 3 + 5644755 5645092 5644921.909 5644704 5645420 + gene protein_coding_gene FALSE TRUE AT3G16570.1 RALFL23 (RALF-LIKE 23) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to rapid alkalinization factor 1 precursor [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAO27366.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.501951412545748 4.0545620159897 0.00330727255652703 1 5.32838379768494 18.8009252570751 0.501951412545748 0.150228864901794
AT3G11090_at 8.48664952619846 8.78959283670399 8.8325085819734 8.93910843004127 8.2488735364031 8.24488204109394 8.59682305940175 8.98058583726677 8.59322503690238 8.13460973124596 7.25080870909118 7.59384566218348 7.6351472871568 7.75167483943433 7.56213255320905 7.99984373527644 8.03831481777262 7.83934063807725 8.15077078391752 0.170199125670326 0.169322837418767 0.170022152268065 0.169300173922660 0.174133180696183 0.174142051493679 0.171307135303995 0.174407200438628 0.1800146804886 0.177351405154573 0.192378557645093 0.184100417967575 0.178142611464569 0.177226198371530 0.169813212724575 0.173583657396486 0.181254733515823 0.171367000321146 0.172891829132475 3 3 + 3475063 3475514 3475295.455 3475042 3475539 + gene protein_coding_gene FALSE TRUE AT3G11090.1 LOB domain family protein / lateral organ boundaries domain family protein (LBD21) Identical to Putative LOB domain-containing protein 21 (LBD21) [Arabidopsis Thaliana] (GB:Q9SRL8); similar to LOB domain protein 25 / lateral organ boundaries domain protein 25 (LBD25) [Arabidopsis thaliana] (TAIR:AT3G27650.1); similar to Protein of unknown function DUF260 [Medicago truncatula] (GB:ABE91408.1); contains InterPro domain Lateral organ boundaries, LOB; (InterPro:IPR004883); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.365524827297477 -4.04892896652668 0.00333410527598041 1 5.32115250463093 16.6407565049506 -0.365524827297477 0.086601363944445
AT4G29160_at 8.33789705490986 8.5253150178478 8.82151723545656 8.92218548692516 8.78889484132323 8.70450428691357 8.36695575632148 8.50792356832021 8.0301905684668 8.1732330742193 8.61666470093469 8.33194576950895 8.37715738696516 8.37881731984976 8.08914459110464 8.245496843309 8.27319107853754 8.0199463264346 7.97639941433989 0.178482406963455 0.16789449774971 0.185738137724938 0.170407462506077 0.174369794917513 0.176370666940062 0.180336851315198 0.178510168295185 0.181344674943787 0.166123560367731 0.169775526830022 0.163032786951042 0.176284271661735 0.178408436867415 0.172594837446789 0.168592075114146 0.188266905201497 0.183506943470445 0.177893201418454 4 0|4 /|+ 14381413 14382324 14382043.125 14380759 14382672 + gene protein_coding_gene FALSE TRUE AT4G29160.1|AT4G29160.2|AT4G29160.3 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT2G19830.1); similar to Os09g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062723.1); similar to SNF7 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95683.2); similar to Os06g0608500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058040.1); contains InterPro domain Snf7; (InterPro:IPR005024)|similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT2G19830.1); similar to Os09g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062723.1); similar to SNF7 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95683.2); similar to Os06g0608500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058040.1); contains InterPro domain Snf7; (InterPro:IPR005024); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.303178548188338 4.04822800889424 0.00333746050769272 1 5.32025228767827 16.7976424165468 0.303178548188338 0.0465170419279919
AT1G22840_at 10.5904468407659 10.7152165663894 11.0399479476461 11.0199436573477 10.2979621310685 10.2102108746541 10.2902721381139 10.5700369515520 10.1543931732076 10.0693262777765 10.6431221432881 10.8443015246742 10.4903474936370 10.5969727878269 10.7996242117974 10.4605389493965 10.1672779029654 10.4687160346240 9.8685737386068 0.0836749367293022 0.0834004664383335 0.0856987414761924 0.0869251928414113 0.0848653019573916 0.08978097727445 0.0906004715169513 0.0867818133733973 0.0901987345615833 0.0873358738501444 0.0864884970928191 0.0836164569959298 0.0861487785299946 0.08662717035977 0.0873062396995529 0.0834004664383335 0.0914232390606972 0.0910644922574594 0.0856072893098225 1 1|0 +|/ 8079374 8080251 8079912.5 8079278 8080563 + gene protein_coding_gene FALSE TRUE AT1G22840.1 ATCYTC-A/CYTC-1 (CYTOCHROME C-1); electron carrier Encodes cytochrome c. Contains two site II (TGGGCC/T) elements, which interact with a TCP-domain transcription factor, and a downstream internal telomeric repeat, and are required for expression of the Cytc-1 gene. Promoter directs preferential expression in root and shoot meristems and in anthers. Identical to Probable cytochrome c At1g22840 [Arabidopsis Thaliana] (GB:O23138); similar to CYTC-2 (CYTOCHROME C-2), electron carrier [Arabidopsis thaliana] (TAIR:AT4G10040.1); similar to Cytochrome c (GB:P62772); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c; (InterPro:IPR012125); contains InterPro domain Cytochrome c, class I; (InterPro:IPR003088); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Cytochrome c, class IA/ IB; (InterPro:IPR002327) 0.314310631484856 4.04691957176235 0.00334373319263543 1 5.31857168019399 20.8865681522204 0.314310631484856 0.0552519639046398
AT1G73630_at 6.63929247974905 7.02460786933756 7.39044955111508 7.33105094965283 7.5296822917417 7.38034207208033 8.09520856186498 8.23991708010133 7.00895796389563 7.243736648072 8.14687114814424 7.84203537592166 7.94605960510027 7.8480419463929 7.45258796783166 7.52667401813117 7.56578769493446 7.59518160399404 6.61047809112233 0.187757676190589 0.181609580972451 0.182404110075924 0.185757598352651 0.175947894557854 0.185744214688080 0.177926330645108 0.176736925117235 0.189076216353116 0.182275200954919 0.181884532484991 0.173332894969045 0.177350904150263 0.180217686076363 0.175399542617705 0.174255045046308 0.185911189953964 0.182392010766241 0.176294795675929 1 1 + 27688425 27688876 27688652.636 27688397 27689114 + gene protein_coding_gene FALSE TRUE AT1G73630.1 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G18210.2); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.347069368705280 4.04477626927496 0.00335403551032714 1 5.31581810772012 14.8012167674985 0.347069368705280 0.0764657262093378
AT3G53000_at 6.13493280960944 5.97607428163039 5.83838884019747 5.83941776299684 6.74758969565966 6.01833810931359 5.68686202357921 5.12717519820564 4.70209869677377 5.07108772460338 5.72123575958918 5.2715299480006 5.74104494580795 5.91989279075452 5.1209862191611 5.39588374124599 5.87596518160599 5.30915073671856 4.83588330714788 0.226690728758161 0.223915915085606 0.223720882346131 0.226397957845871 0.229046358251522 0.227029313201618 0.229458038093076 0.223091951584030 0.221216422440725 0.223560955737617 0.230065982971634 0.223995564765708 0.218744613448782 0.218298738926097 0.218298738926097 0.220764071630864 0.222039044191107 0.228301322724569 0.231008847422864 3 3 + 19665736 19666708 19666408.636 19665046 19667058 + gene protein_coding_gene FALSE TRUE AT3G53000.1 ATPP2-A15 (Phloem protein 2-A15) similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Os03g0116700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048762.1); similar to Os02g0675800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047722.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92303.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.527221889818931 4.04472950544174 0.00335426067049514 1 5.31575801991775 11.1281728775834 0.527221889818931 0.161441944518008
AT2G45730_at 5.78067921335843 5.78617797612477 5.04880076900863 5.34554052395454 5.70977951545098 5.10972960434611 6.49638974629441 6.19723675070245 5.25948365876947 5.19769677318276 4.92901561491184 5.30091832705043 5.33372574490644 5.27763275691136 5.25647413907707 5.57491869573543 5.03639131155463 4.84033200318178 5.52341820237404 0.186905372341839 0.185531950604130 0.183765471776352 0.188139472094324 0.190235597270236 0.201262883841051 0.190506089483516 0.193825891767139 0.189102858210484 0.18900305576411 0.188525116898194 0.191192622311778 0.189812928860368 0.189061354543397 0.187481399070203 0.182938641188875 0.195898976531914 0.189864175553287 0.18179937992986 2 2|0 -|/ 18843593 18844533 18843955.222 18843338 18846234 - gene protein_coding_gene FALSE TRUE AT2G45730.1 eukaryotic initiation factor 3 gamma subunit family protein similar to tRNA(1-methyladenosine) methyltransferase, subunit GCD10 (ISS) [Ostreococcus tauri] (GB:CAL54124.1); similar to OSIGBa0127D24.9 [Oryza sativa (indica cultivar-group)] (GB:CAH65746.1); similar to Os04g0112300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052037.1); contains InterPro domain Eukaryotic initiation factor 3, gamma subunit; (InterPro:IPR007316) -0.447424227852957 -4.0431484998174 0.00336188247401332 1 5.31372633400989 10.9445629052091 -0.447424227852957 0.126890156988508
AT4G15180_at 5.19561802507243 4.52569238606122 5.03167562159274 5.26608612270652 4.50523773760974 5.23690566295905 3.91761676635468 4.38924790770484 4.39195279163551 4.46031499216623 4.79150631086172 4.89579172934254 5.67145898256816 5.02138497084571 5.07641603763294 5.4712646894601 5.72842080261168 4.09984843134867 4.29616231174766 0.254935076811921 0.254935076811921 0.254935076811921 0.273685031116226 0.272284174399608 0.262055230736609 0.254935076811921 0.301629712112203 0.273726871069794 0.265424291143555 0.262486566885722 0.255583990672622 0.267577317347467 0.254935076811921 0.298048200243073 0.254935076811921 0.263473788389780 0.268090086367661 0.271623903950479 4 4 + 8661623 8661859 8661777.167 8651406 8662587 + gene protein_coding_gene FALSE TRUE AT4G15180.1 SET domain-containing protein similar to EFS (EARLY FLOWERING IN SHORT DAYS) [Arabidopsis thaliana] (TAIR:AT1G77300.2); similar to Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases (ISS) [Ostreococcus tauri] (GB:CAL55747.1); similar to Os08g0180100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061137.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) 0.607316988701428 4.04246638016806 0.00336517659445594 1 5.31284963816058 9.49717079184952 0.607316988701428 0.194370706745873
AT3G17810_at 9.7678047607535 9.85716011776867 10.0784615096929 10.2775887537513 10.1803729566568 9.47871653670274 9.4154753129635 9.29760334225609 8.77709360821246 8.52735492630685 8.98384172233163 8.80404086549718 9.17641272185462 9.15573171106648 8.7487967354783 9.23986057589832 9.23685678774591 9.25184519824703 8.46827843280597 0.105608932084138 0.105500082531821 0.110876511640650 0.106906365113236 0.105500082531821 0.110182401756182 0.108616074472848 0.105500082531821 0.121854151439400 0.112125120656868 0.110361059985752 0.106799728943188 0.108668828656417 0.113178358009626 0.119980259606989 0.105500082531821 0.107069439009513 0.107943277585563 0.112864427229524 3 0|3 /|+ 6095541 6096138 6095800.444 6094104 6096572 + gene protein_coding_gene FALSE TRUE AT3G17810.1 dihydroorotate dehydrogenase family protein / dihydroorotate oxidase family protein similar to senescencs-related protein [Pyrus pyrifolia] (GB:BAA86060.1); similar to putative dehydrogenase [Lycopersicon esculentum] (GB:AAN64920.1); similar to Dihydroorotate dehydrogenase 1 [Medicago truncatula] (GB:ABE80190.1); contains InterPro domain Dihydroorotate dehydrogenase; (InterPro:IPR001295); contains InterPro domain Dihydroorotate dehydrogenase 1; (InterPro:IPR005720) 0.451519178210997 4.04216537647067 0.00336663131169402 1 5.31246274722752 18.6269390507549 0.451519178210997 0.128789365759695
AT4G31430_at 5.13249337774511 5.11974188961583 4.93828715750936 4.90247921457934 5.84877460013709 5.96007520910694 4.68458668163963 4.31948879614175 4.43372557472810 4.23088145167414 4.11060235422898 4.39961909834102 4.16083776018276 4.24145682307495 4.65314657266015 4.94838702494916 5.00150992752082 4.77103545452605 4.75705804309521 0.220251094885126 0.216084655300003 0.222746171689154 0.222940916808576 0.221470184711235 0.230867192129125 0.222086765764833 0.223047213268158 0.226035075743983 0.216084655300003 0.216382348828571 0.220899575446412 0.228411883105843 0.216084655300003 0.216084655300003 0.224571893944963 0.232635493561632 0.222119371587603 0.223180002486836 4 4|0 +|/ 15250806 15251762 15251331.2 15248462 15252843 + gene protein_coding_gene FALSE TRUE AT4G31430.1|AT4G31430.2|AT4G31430.3 similar to nucleoporin-related [Arabidopsis thaliana] (TAIR:AT5G20200.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80407.1) 0.33013118974197 4.04023945145523 0.0033759550266483 1 5.30998692047755 9.6180972325267 0.33013118974197 0.0663792893104109
AT1G25350_at 8.85765211838334 9.04817635181096 8.77702441824234 8.66591365525689 8.97598807941816 8.43390201200788 9.30491467141406 9.2382323714875 8.82348171516428 9.12273283687066 8.32256755023893 8.60567320141262 8.65354044210938 8.49080649759924 8.64101057096028 8.72220923769037 8.77028387591665 8.73552320936004 9.07532154227042 0.120341333808346 0.119158798963685 0.129356411137437 0.127412356478670 0.121322190769773 0.126234819869587 0.121894321535154 0.123614909105255 0.121330747674931 0.123870902254292 0.128091640843712 0.122092815004536 0.123738001150206 0.129324872877698 0.126641718727175 0.121314910488755 0.124234071050160 0.119158798963685 0.121051345806236 1 1|0 -|/ 8889286 8890220 8889749.333 8889097 8894245 - gene protein_coding_gene FALSE TRUE AT1G25350.1 OVA9 (OVULE ABORTION 9); glutamine-tRNA ligase similar to tRNA synthetase class I (E and Q) family protein [Arabidopsis thaliana] (TAIR:AT5G19720.1); similar to Glutaminyl-tRNA synthetase (Glutamine--tRNA ligase) (GlnRS) (GB:P52780); similar to glutaminyl-tRNA synthetase [Danio rerio] (GB:AAT68085.1); similar to glutamine-tRNA ligase [Dictyostelium discoideum AX4] (GB:XP_636180.1); contains InterPro domain Ribosomal protein L25-like; (InterPro:IPR011035); contains InterPro domain Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 2; (InterPro:IPR007638); contains InterPro domain Glutaminyl-tRNA synthetase; (InterPro:IPR004514); contains InterPro domain Glutamyl-tRNA synthetase, class Ic; (InterPro:IPR000924); contains InterPro domain Glutaminyl-tRNA synthetase, non-specific RNA-binding region part 1; (InterPro:IPR007639) -0.394256855991749 -4.03935560728727 0.00338024310146358 1 5.30885050407864 17.725165720384 -0.394256855991749 0.101933298323758
AT3G18760_at 5.71211810605572 6.25755786710745 5.53281865431372 5.87808702809825 4.60383379151802 4.61699173617059 5.4803394656315 6.10836112238454 4.41285926592127 4.26659945042987 3.95953710916911 4.22249964007309 3.68443983530846 3.78867168257682 4.58973709677537 4.13424985416775 4.17474216558299 4.38786078923027 4.55846487181101 0.218688504299769 0.222482565298638 0.220381995427097 0.232932149304588 0.219857722465079 0.220281587770406 0.227046907799333 0.23280009735808 0.227453983459517 0.223996267787039 0.223751235840059 0.217519954683400 0.219470776350965 0.219003714693985 0.217519954683400 0.223426954518752 0.22937348693141 0.233317295388477 0.218906735656254 3 3|0 -|/ 6457970 6459535 6458618.4 6457696 6459633 - gene protein_coding_gene FALSE TRUE AT3G18760.1|AT3G18760.2 ribosomal protein S6 family protein similar to Os01g0220300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042425.1); contains domain Ribosomal protein S6 (SSF54995); contains domain no description (G3D.3.30.70.60) -0.513292631106613 -4.0391497421594 0.00338124271676802 1 5.3085857906652 9.78894270524224 -0.513292631106613 0.155874046299028
AT1G22870_at 5.30340346615179 5.29563251015038 5.90352767264137 5.83461490186815 5.65770161771091 6.23715275772819 5.05169938126736 4.70638042352798 4.46245704693340 4.2105456133045 4.69976095606577 4.17929770344069 4.10157602278988 4.39651747227476 4.30695444122411 4.55593678266193 4.65424540605221 4.29805166746922 4.42380382678169 0.217663156549577 0.204578293997184 0.212375653049948 0.205563280084178 0.213809191349986 0.212783332466939 0.219390837391347 0.206955049891290 0.215464526191382 0.210420496890130 0.210218787146933 0.204197878750541 0.212967806316051 0.207034845361344 0.212015461307737 0.208399057330881 0.21219424576778 0.215791071989875 0.208445598802689 1 1 + 8093563 8094083 8093839 8089490 8094162 + gene protein_coding_gene FALSE TRUE AT1G22870.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71410.1); similar to protein kinase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61275.1); similar to Os01g0616100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043575.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain HEAT; (InterPro:IPR000357) 0.426205343185118 4.03876668750003 0.00338310354940535 1 5.3080932173708 9.88108645079936 0.426205343185118 0.117348183013303
ATCG01100_at 11.7534293144038 12.1998359836067 12.4031570614719 12.2275433226623 12.3421684381616 11.8411706090740 12.4956900543614 12.4284270732383 12.3372983986406 12.6746587569951 13.7358802723808 13.7740823035099 13.5132969747737 13.1678523533079 13.2008741312619 13.6078549720469 13.0853760350182 13.3448152653666 12.6283288565267 0.0915467885316778 0.089481217525235 0.089481217525235 0.092647669222695 0.089481217525235 0.0907724774568621 0.091321883108609 0.0938714465077513 0.112331753535001 0.0955404181518058 0.0972606782362817 0.0904856599074988 0.091679641184834 0.098647867031156 0.100099531755293 0.089481217525235 0.0950639125841304 0.093561138645779 0.0937281242007336 C C - 119863 121495 120217.545 119847 122009 - gene protein_coding_gene FALSE TRUE ATCG01100.1 NADH dehydrogenase ND1 Identical to NAD(P)H-quinone oxidoreductase subunit 1, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit 1) (NDH subunit 1) (NADH-plastoquinone oxidoreductase subunit 1) (ndhA) [Arabidopsis Thaliana] (GB:Q37165); similar to NADH-plastoquinone oxidoreductase subunit 1 [Gossypium hirsutum] (GB:YP_538985.1); contains InterPro domain Respiratory-chain NADH dehydrogenase, subunit 1; (InterPro:IPR001694) 0.433078142922011 4.03766875337888 0.00338844325040752 1 5.30668123584476 25.1991857533787 0.433078142922011 0.120598396018054
AT3G23050_at 9.45437737086113 9.60662270767913 9.32606898711033 9.32978869864993 10.1908179566285 9.91196458790921 9.73579973184173 9.66095967741386 10.1100000960566 9.8858657581718 10.6518052532941 11.1548197208865 10.7190741494025 10.6286397723565 10.8170829117862 10.7905834304404 10.2528547306923 10.7710907282599 10.5077940981515 0.0945887997941145 0.092481691279614 0.0943231664163238 0.0907170651568809 0.0906036646732109 0.0945826805952044 0.0950595968733384 0.0983236678274203 0.102361769799521 0.0949425678990595 0.0948465536366266 0.0927863747139273 0.0939094589243208 0.102903954706267 0.100431308854490 0.0952835709625417 0.0979321655272907 0.0946945290953755 0.0957088235901804 3 3|0 +|/ 8194929 8195769 8195418.5 8194686 8197160 + gene protein_coding_gene FALSE TRUE AT3G23050.1|AT3G23050.2 IAA7 (AUXIN RESISTANT 2); transcription factor|IAA7 (AUXIN RESISTANT 2) Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. Identical to Auxin-responsive protein IAA7 (Indoleacetic acid-induced protein 7) (Auxin resistant 2) (IAA7) [Arabidopsis Thaliana] (GB:Q38825;GB:Q8LAK1); similar to IAA14 (SOLITARY ROOT), transcription factor [Arabidopsis thaliana] (TAIR:AT4G14550.1); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84710.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.315288685986023 4.03753754845014 0.00338908195612690 1 5.30651248799531 20.0976152087283 0.315288685986023 0.056489218390571
AT3G18740_at 10.2051897881345 10.4568881652590 9.95876861789404 9.76920648326984 9.61487810952122 9.75008740718329 9.91449558212837 10.3771002016671 10.1874453130369 9.9956647193332 9.725038261126 10.1416459781776 9.60803632432508 9.73298454690588 10.0731912852385 9.57055140584668 9.32665562556243 9.46812188609294 9.87549395038057 0.0929465205238642 0.0954605346525848 0.0953413281278155 0.100376083501316 0.095937072259636 0.09762720402275 0.0977552312715077 0.0963076546574897 0.0963716228218214 0.0982821089030933 0.0954292351190195 0.0982228031472203 0.101342456053039 0.0974094260663857 0.0953635482859275 0.0954221483066883 0.104538793951400 0.102101558651913 0.0956815205374313 3 3|0 +|/ 6453485 6453850 6453735.9 6453374 6454024 + gene protein_coding_gene FALSE TRUE AT3G18740.1 60S ribosomal protein L30 (RPL30C) Identical to 60S ribosomal protein L30-3 (RPL30C) [Arabidopsis Thaliana] (GB:Q9LSA3); similar to 60S ribosomal protein L30 (RPL30B) [Arabidopsis thaliana] (TAIR:AT1G77940.1); similar to 60S ribosomal protein L30 (GB:O49884); contains InterPro domain Ribosomal protein L30e; (InterPro:IPR000231); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038) -0.38946988829382 -4.0370541856753 0.00339143607776347 1 5.30589079070099 19.8684832069203 -0.38946988829382 0.0996486057538728
AT2G23420_at 6.79021986496306 6.9598905597603 7.0765024532953 7.15279813597366 7.09363860668103 6.36467891995674 7.97123748721363 7.88453770214836 7.38116416854838 7.4760242396075 6.95899541947721 6.87240026872227 6.56263666044234 7.09702052266767 6.57971541433084 7.47045295297182 7.32659999599847 6.90959453949651 7.35520338077161 0.157821996404715 0.157235370434800 0.159774097876994 0.160004615074091 0.163070867601804 0.164866655231838 0.166256991896571 0.170372060170588 0.164272761921874 0.165144070181123 0.16036599503937 0.157299063330574 0.16769961255485 0.173604013684891 0.174367434132237 0.157142004364826 0.172982088042886 0.16332511194744 0.164725058628812 2 2 + 9981156 9981927 9981518.364 9978825 9982272 + gene protein_coding_gene FALSE TRUE AT2G23420.1 nicotinate phosphoribosyltransferase family protein / NAPRTase family protein similar to nicotinate phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G36940.1); similar to B0222C05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66393.1); similar to nicotinate phosphoribosyltransferase-like protein [Medicago truncatula] (GB:AAP69614.1); similar to Nicotinate phosphoribosyltransferase related [Medicago truncatula] (GB:ABE93547.1); contains InterPro domain Nicotinate phosphoribosyltransferase related; (InterPro:IPR006405); contains InterPro domain Nicotinate phosphoribosyltransferase and related; (InterPro:IPR007229) -0.455760249545216 -4.03505422710941 0.00340119507970167 1 5.30331803712404 14.3498417502853 -0.455760249545216 0.131054864016950
AT4G20410_at 9.54452279869186 9.49806623470101 9.86492464362562 9.81154785239614 10.3241668627715 9.80233358056154 9.54723835776234 9.11353438781625 9.28177519626025 9.23982411983497 9.67582336862024 9.40573885030594 9.62835371259944 9.53830144521068 9.42017335636315 9.39659082432433 9.46331164037047 9.58495547932828 9.0328532406071 0.0858876692572898 0.0823205329414035 0.0900601107096483 0.0852407872590018 0.0849376653266858 0.0817421372966855 0.0877605595255026 0.0833114191009148 0.0920509082807218 0.0873942554418351 0.0819470353563008 0.0823049983900364 0.0855290403750704 0.0850833095297617 0.0852321351193698 0.0817421372966855 0.085969766995041 0.0887692474792704 0.0845214513195704 4 4|0 -|/ 11014171 11015376 11014851.4 11013906 11016587 - gene protein_coding_gene FALSE TRUE AT4G20410.1 GSNAP (GAMMA-SOLUBLE NSF ATTACHMENT PROTEIN); intracellular transporter Encodes a member of the gamma-soluble NSF attachment protein (gSNAP) gene family. Identical to Gamma-soluble NSF attachment protein (Gamma-SNAP) (N-ethylmaleimide- sensitive factor attachment protein, gamma) (GSNAP) [Arabidopsis Thaliana] (GB:Q9SPE5;GB:Q9SUN8); similar to ALPHA-SNAP2 (ALPHA-SOLUBLE NSF ATTACHMENT PROTEIN), soluble NSF attachment protein [Arabidopsis thaliana] (TAIR:AT3G56190.1); similar to unknown [Solanum tuberosum] (GB:ABA40435.1); similar to Os04g0618500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053892.1); contains InterPro domain NSF attachment protein; (InterPro:IPR000744); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.427120677917687 4.03300871562835 0.00341120743486572 1 5.30068597950558 19.0377786415613 0.427120677917687 0.118060372804986
AT3G45040_at 8.105727603472 8.44059272397264 8.29725737556246 8.72894990278676 8.61043475841365 7.89598676576166 6.2376776342897 6.30095088466092 6.67422036674022 6.05105839996481 6.63041950179687 6.28005790839556 5.91895229511676 6.47730193894109 6.10219709564945 6.97593643521028 6.23539313192991 5.72956347586538 6.41513986539815 0.274102946070933 0.274102946070933 0.28419600292537 0.279792207610678 0.27485058665051 0.299341096170492 0.280106462636274 0.278765741215263 0.299452392696769 0.279060840689527 0.280843538188252 0.278412997823367 0.275757419983393 0.277147162082079 0.277140469812152 0.276046044474798 0.281189733192561 0.274482275299207 0.278407554279354 3 3|0 -|/ 16483808 16484488 16484117.5 16483647 16486738 - gene protein_coding_gene FALSE TRUE AT3G45040.1 phosphatidate cytidylyltransferase family protein Encodes a putative dolichol kinase. similar to unnamed protein product [Macaca fascicularis] (GB:BAE91315.1); similar to KIAA1094 protein [Homo sapiens] (GB:BAA83046.2); similar to Os02g0146500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045877.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) 0.51275408393054 4.03200472535679 0.00341613328734949 1 5.29939383651959 14.1641308395637 0.51275408393054 0.156030880041381
AT4G36020_at 6.53615922894097 7.1606074592956 7.33823675966875 7.31769974486382 6.5733687819796 6.9142532671129 6.97490701442234 6.87964951646658 6.50618045990228 6.26512534719714 7.25382757069544 7.25906223840785 7.23997427630716 6.50790742881068 7.55177115653833 7.1339945759705 7.21367840777766 6.72890122344132 6.36489199700564 0.163725533102238 0.163180435049529 0.159021125933594 0.167864776759587 0.173492613241919 0.174279884046106 0.160044280282319 0.166595246654895 0.162814437616407 0.169106085259349 0.170619350137734 0.163883742688034 0.160523230254956 0.1807147467889 0.168640401047273 0.158635764829653 0.169509517781925 0.166030706984833 0.163785671036108 4 4 - 17043448 17043963 17043721.727 17043115 17044399 - gene protein_coding_gene FALSE TRUE AT4G36020.1 CSDP1 (COLD SHOCK DOMAIN PROTEIN 1); nucleic acid binding similar to cold-shock DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G17870.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); similar to Os02g0121100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.44023292100008 4.03013732246097 0.00342531552275846 1 5.29699001878259 13.7067963271498 0.44023292100008 0.124266454117297
AT1G56700_at 9.51206964987589 9.82231277641453 10.3458106532022 10.2246616817894 10.7052754947702 10.2309799480657 10.1169747605649 9.85233388231964 8.94105218206722 9.56078558213994 9.61095043902295 9.36774535242559 9.7374571955373 9.75960587247149 9.10783561260772 9.64156169418547 9.50215643720478 9.52353476196442 9.28240670220475 0.136229276098109 0.136431715398699 0.141903940057638 0.141018739549363 0.142359729473712 0.158770882762512 0.143788064560515 0.138903166841545 0.148854555051871 0.141096989294905 0.138159603970557 0.138027263653256 0.137123214922865 0.140706208588464 0.143009348859431 0.135484716099986 0.149068747202469 0.140892892059857 0.136560885029722 1 1|0 +|/ 21260558 21261276 21260963.6 21259841 21261638 + gene protein_coding_gene FALSE TRUE AT1G56700.1|AT1G56700.2|AT1G56700.3 pyrrolidone-carboxylate peptidase family protein similar to pyrrolidone-carboxylate peptidase family protein [Arabidopsis thaliana] (TAIR:AT1G23440.1); similar to Os07g0639600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060416.1); similar to hypothetical protein DDBDRAFT_0189325 [Dictyostelium discoideum AX4] (GB:XP_647079.1); similar to Os09g0396300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063100.1); contains InterPro domain Peptidase C15, pyroglutamyl peptidase I; (InterPro:IPR000816) 0.410350137851661 4.03010406965803 0.00342547926960287 1 5.29694720867554 19.4976877272827 0.410350137851661 0.110256184933294
AT3G56410_at 5.87535404720271 6.4622423115587 6.8718699144912 6.68974550143239 6.89260059581338 6.66439905693768 5.19768453161209 5.14420507741438 6.1932013794179 6.05174143528386 6.0842242591383 6.11216473455247 5.47386648869616 5.73197401126622 5.46806569668557 5.84501710102622 5.72568526637553 6.32182734059256 6.11418604105112 0.205687519186674 0.213090708482036 0.214249808342919 0.213400264474779 0.200620002149053 0.220855863746458 0.213106953417051 0.200620002149053 0.209583029981838 0.200620002149053 0.200620002149053 0.200620002149053 0.200620002149053 0.208096132195226 0.206656237154040 0.202596627572883 0.218824446238815 0.210545899894112 0.207657460340796 3 3 - 20927322 20927808 20927471.182 20927151 20932317 - gene protein_coding_gene FALSE TRUE AT3G56410.1|AT3G56410.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61670.1); similar to cell wall-anchored protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] (GB:YP_300225.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735) 0.417712884464513 4.02929035091994 0.00342948887619553 1 5.29589955757709 12.2072939949958 0.417712884464513 0.113814610850474
AT3G03980_at 5.94370965221057 5.59038515453015 5.22999114654991 4.95845881992114 5.01377444230252 5.24075316285297 5.54500730294509 5.73177032932646 5.84973489140068 6.07632207381828 5.60931501649938 6.00661495084294 5.87959416233373 5.64924977172519 6.35020882018127 5.69978008482533 5.59312654725824 5.91710714746851 6.05953644744849 0.162471096560331 0.161531150304686 0.163375351939292 0.164316509826501 0.163825280828017 0.168722280834018 0.157098090579666 0.165115286907082 0.167731617789987 0.159562590183177 0.163890978086916 0.159248234120933 0.161396369429456 0.169925658676673 0.167528486982436 0.165946902167112 0.158682806000848 0.160773202562001 0.163342353765942 3 3 + 1032029 1033004 1032512.909 1031749 1033214 + gene protein_coding_gene FALSE TRUE AT3G03980.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G04000.1); similar to short chain dehydrogenase [Solanum tuberosum] (GB:BAE46415.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.374523479213545 -4.02864021181502 0.00343269604938007 1 5.29506243195087 11.323392434762 -0.374523479213545 0.0923806857987576
AT4G00300_at 8.04727800147437 8.34417072393579 7.62633089499476 7.8437473927045 7.76054546708297 7.72074368312736 6.98871961542772 6.94191679612016 8.42704361777627 7.00247201224983 8.76839318239374 8.59219822129555 7.47521802114696 7.634216372385 9.03286481470432 7.64941118072905 7.01869971377106 8.0736744618201 7.1778673572663 0.184540431185042 0.178200588454722 0.174199105659616 0.176696080828075 0.176959921963419 0.189062245262446 0.178206139004581 0.184710072727207 0.18680764766386 0.185753245740281 0.177131055987943 0.173160817308990 0.182029289964335 0.185184030960929 0.181901269325002 0.175022673945325 0.187830352119068 0.176706725782990 0.183337591731881 4 4 + 129584 130061 129739.364 126509 130331 + gene protein_coding_gene FALSE TRUE AT4G00300.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT1G01570.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71200.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740) 0.326055371085576 4.02463146575569 0.00345254240920233 1 5.28989914266614 15.4423709844225 0.326055371085576 0.0645635173024746
AT4G04800_at 5.88423685316415 6.40240759508326 6.57122826290341 6.93155524271343 7.05526805605744 6.47310205556965 6.66491586360826 6.8469278553626 5.67951169994809 5.54034120608192 6.67781131360191 6.10899670209588 6.17663523758458 6.15021276926075 5.9046082927266 5.99914491621486 6.55948619089452 6.13683164049882 5.33523279646768 0.215888051476777 0.214596399737805 0.212389037392495 0.213171125698624 0.223000880538413 0.212735466358042 0.220832282917586 0.217899620401864 0.231330567130407 0.208661489502417 0.214513065085863 0.214623587982366 0.214737419286006 0.240521140954874 0.210569498107831 0.211462158285924 0.216028121771004 0.213411100143288 0.219551782974627 4 4|0 +|/ 2439592 2440895 2440303.2 2439548 2441203 + gene protein_coding_gene FALSE TRUE AT4G04800.1 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21860.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) 0.502010172266798 4.02373677706708 0.00345698852757065 1 5.28874640540208 12.4699941149039 0.502010172266798 0.151892521069269
AT1G07140_at 9.82425210434134 10.1911150138162 10.0345846336292 10.4292278679033 10.0456469245841 9.93988833388341 9.88058602255094 10.2347012359262 9.3539984751548 9.56439482860842 10.4497005489998 10.3308748080493 10.3102940890835 10.1695236792694 10.3010308765022 10.1754389630299 10.1627769711419 10.0856599877897 9.57219384036244 0.100974377114741 0.0989179540744493 0.0981798310076577 0.0998365881123736 0.0986076043034272 0.104429992675754 0.0988777420850622 0.101506172071765 0.117186616501477 0.102006140056560 0.106517784072109 0.100512943508703 0.0981361773620075 0.103359069044315 0.102374125855722 0.0999862157357726 0.103210914702214 0.103752112704730 0.100670332108432 1 1|0 -|/ 2192359 2193562 2192937.25 2191722 2193792 - gene protein_coding_gene FALSE TRUE AT1G07140.1 SIRANBP (Ran-binding protein 1a); Ran GTPase binding Encodes a putative Ran-binding protein (siRanBP). Identical to Ran-binding protein 1 homolog a (Ran-binding protein siRanBP) (RANBP1A) [Arabidopsis Thaliana] (GB:Q9LMK7;GB:O04149;GB:Q9XHS1); similar to Ran-binding protein 1b (RanBP1b) [Arabidopsis thaliana] (TAIR:AT2G30060.1); similar to unknown [Brassica rapa] (GB:ABB97039.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.415486727474675 4.02287016101273 0.00346130097731237 1 5.28762970790732 19.9450127030086 0.415486727474675 0.113071610518443
AT1G79210_at 8.23764878707528 8.4133525857317 8.378847375347 8.84355763136778 8.56754955045275 8.52549863725519 8.07407730180398 8.2875648413266 7.0413812762152 7.47780758869427 7.75666003378955 8.06012139527819 7.86374158819119 7.52896036883316 7.09937486840786 7.90167345356453 7.75219953316934 7.61866539335527 7.29018060701485 0.206549381751876 0.211311975858947 0.220044028202063 0.213272562736856 0.207695620191839 0.221228952861373 0.202091911058058 0.215196820360525 0.236782650485601 0.220262553324879 0.217265020053649 0.20249113543849 0.209169137972370 0.210570158232154 0.219221830673615 0.205766286559936 0.224072963843585 0.220386664181073 0.214308919101565 1 1|0 -|/ 29801787 29802779 29802210.8 29800974 29803676 - gene protein_coding_gene FALSE TRUE AT1G79210.1|AT1G79210.2|AT1G79210.3 20S proteasome alpha subunit B, putative Identical to Proteasome subunit alpha type 2-B (EC 3.4.25.1) (20S proteasome alpha subunit B-2) (PAB2) [Arabidopsis Thaliana] (GB:Q8L4A7;GB:O64532); Identical to Proteasome subunit alpha type 2-A (EC 3.4.25.1) (20S proteasome alpha subunit B) (Proteasome component 3) (PAB1) [Arabidopsis Thaliana] (GB:O23708;GB:Q94EI0); similar to PAB1 (20S proteasome alpha subunit B1), peptidase [Arabidopsis thaliana] (TAIR:AT1G16470.2); similar to unknown [Solanum tuberosum] (GB:ABA81880.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.376793587485074 4.0226220671593 0.00346253659923410 1 5.28730999753786 15.8997442904442 0.376793587485074 0.0938608447643356
AT3G25520_at 10.0154748061799 9.96313670847955 9.33924617047315 9.57275793251596 9.53656681459915 9.4313426429829 10.1311208872822 10.1538088851280 9.43917403884985 9.5269816076900 9.53630902159638 10.1244791660511 9.41162403372252 9.44074778504775 10.1592227424353 8.98750616994885 9.4298464740845 9.35901981299144 9.71347677296415 0.109604397711698 0.108284800145097 0.116527701382896 0.115903888978196 0.110263011718676 0.10940409849149 0.107229038286668 0.109268986827778 0.116885283664519 0.113605378985395 0.107420937848263 0.109835996072786 0.110827827163060 0.111152147047613 0.110299845683634 0.114788124434369 0.118739193941423 0.107733730808212 0.106263294570093 3 3|0 -|/ 9271010 9271670 9271342 9270524 9272627 - gene protein_coding_gene FALSE TRUE AT3G25520.1 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5); structural constituent of ribosome Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identical to 60S ribosomal protein L5-1 (ATL5) [Arabidopsis Thaliana] (GB:Q8LBI1;GB:Q940R7); similar to 60S ribosomal protein L5 (RPL5B) [Arabidopsis thaliana] (TAIR:AT5G39740.1); similar to 60S ribosomal protein L5 (GB:Q6UNT2); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484); contains InterPro domain Eukaryotic ribosomal protein L5; (InterPro:IPR005485) -0.299845002028938 -4.0211336931162 0.00346995929737470 1 5.28539175952283 19.3259177929065 -0.299845002028938 0.0454095869888383
AT1G73740_at 5.46622180448588 5.93619955200119 5.98219265707865 6.39240230913885 6.57661046645183 6.27408378575288 6.20433391038144 6.02720762215404 6.39397696458786 5.90112890573034 6.6369133361839 6.74017329017604 6.05166768171386 6.90430902748161 6.17848988004858 6.4545212264982 6.36420465379763 6.78067733207056 5.81259654054876 0.201434764172611 0.185514578855087 0.184266235257152 0.181114642662374 0.184863583992519 0.183525516514609 0.181499649927626 0.196983527218012 0.186605081332494 0.190983138086349 0.181918979265241 0.181650500401325 0.186520438683116 0.183636141683661 0.196194869275122 0.180091722493186 0.196240463626589 0.184403661726933 0.183754604071090 1 1|0 +|/ 27738808 27739605 27739071.556 27737940 27739850 + gene protein_coding_gene FALSE TRUE AT1G73740.1 glycosyl transferase family 28 protein similar to undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase [Gramella forsetii KT0803] (GB:CAL67722.1); similar to undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase [Salinibacter ruber DSM 13855] (GB:YP_444703.1); similar to Os01g0516700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043195.1); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235); contains InterPro domain Glycosyl transferase, family 28; (InterPro:IPR004276) 0.437900166111948 4.01740192463553 0.0034886449728612 1 5.2805805488277 12.3822916919899 0.437900166111948 0.123833539749296
AT4G24770_at 10.8480270543519 10.9769958454553 10.4256090335974 10.457134643404 10.7311379344885 10.8283524468887 11.3027300068789 11.3035481314458 11.5264100869387 11.7103343071257 11.7017919502389 11.7792990894729 11.5888882906353 11.4638627509043 11.9326033837897 11.8805412332655 11.3423456176291 11.3464341651108 11.858194118192 0.0767950668777288 0.078467353502241 0.0761953965134116 0.0750765803758443 0.0759833913411385 0.079859827612363 0.0808134171175697 0.0761720996118365 0.0859751618582431 0.0775591415339363 0.0751970564542171 0.0762277782292778 0.0740113748588465 0.0794697296481326 0.0799713442804827 0.0758409213373502 0.0795459727381173 0.079188431385585 0.0759442267387167 4 4|0 -|/ 12766247 12767526 12766879.5 12766040 12768050 - gene protein_coding_gene FALSE TRUE AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding encodes a chloroplast RNA-binding protein Identical to 31 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) (RBP31) [Arabidopsis Thaliana] (GB:Q04836;GB:P92871;GB:Q03394;GB:Q43350); similar to 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative [Arabidopsis thaliana] (TAIR:AT5G50250.1); similar to RNA-binding protein 2 (GB:AAA18379.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.283054386113160 -4.01729404278165 0.00348918675515587 1 5.28044142618795 22.5230837108386 -0.283054386113160 0.0284769028696258
AT4G39800_at 10.5953369021851 10.9126070102552 10.7365236315130 10.7669284777894 11.0817365849366 10.9308217099829 12.4936316675192 12.5308087108219 11.9885031834417 11.8449669367428 12.1836190524295 12.2253013266053 12.5732374339561 12.1840296331750 11.8755979835701 12.1797133825057 11.6896031543153 11.8892894248443 12.1280470550342 0.0742175599969349 0.0728055802135822 0.0729398688443668 0.0743125640225397 0.0729010914964137 0.0737561687263875 0.0771598810432925 0.0730613000146775 0.076821627831033 0.0724200255959262 0.0720349221727067 0.0710986279114854 0.0710986279114854 0.072501311620727 0.0716114397233705 0.0710986279114854 0.0817338702248131 0.073055079110001 0.0716215010195228 4 4|0 -|/ 18469687 18470482 18470052 18469342 18471961 - gene protein_coding_gene FALSE TRUE AT4G39800.1 MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase); inositol-3-phosphate synthase Columbia myo-inositol-1-phosphate synthase mRNA, complete Identical to Inositol-3-phosphate synthase isozyme 1 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 1) (MI-1-P synthase 1) (IPS 1) [Arabidopsis Thaliana] (GB:P42801;GB:O65667); similar to inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative [Arabidopsis thaliana] (TAIR:AT5G10170.1); similar to inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 [Arabidopsis thaliana] (TAIR:AT2G22240.1); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q96348); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q41107); similar to myo-inositol-1-phosphate synthase (GB:AAA85390.1); contains InterPro domain Myo-inositol-1-phosphate synthase, GAPDH-like; (InterPro:IPR013021); contains InterPro domain Myo-inositol-1-phosphate synthase; (InterPro:IPR002587) -0.320608469727127 -4.01651775391799 0.00349308792843667 1 5.27944027879974 23.2996599947078 -0.320608469727127 0.0613654395579733
AT2G42310_at 9.44558117784263 9.37512614204505 8.92044365182943 9.09587251937118 9.29260389187449 8.98809748648991 8.3799760683866 8.55471337285966 8.27623933982312 8.07932064505238 8.88084947502708 9.03940264065962 8.751361335863 8.82472303536898 9.06140846862004 8.63577792584585 8.44925527575795 8.6022267172617 8.39863211748634 0.151512275073578 0.152712334938964 0.152304125196445 0.146551831049847 0.150394431507014 0.156259205943402 0.139271210557102 0.146898995597313 0.150821290907251 0.145681394164881 0.140317721683399 0.138520396221744 0.140853713346910 0.141977943740576 0.139805137346870 0.14254174251294 0.142934389287657 0.143835098737936 0.139729515994724 2 2 + 17632343 17632645 17632475.273 17632290 17632967 + gene protein_coding_gene FALSE TRUE AT2G42310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57785.1); similar to Os09g0487500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063525.1); similar to BAC19.9 [Lycopersicon esculentum] (GB:AAG01124.1) 0.332316719477177 4.01639692090836 0.00349369558366733 1 5.27928443631064 17.5225632772146 0.332316719477177 0.0690044434617352
AT3G07110_at 9.54605692322905 9.81971864607892 9.17868776040442 9.34446345638694 9.07133996981938 9.08378966089518 9.55439353013483 9.83028570320376 9.0101672860506 9.06801915001653 8.65611332155845 9.15130676304597 8.77115873048186 8.58962546564004 9.38193492876345 8.46792674672576 8.8687240283879 8.79853742048844 8.90884224493688 0.0909188007179242 0.0922079707491068 0.0970261786726772 0.0968277265075521 0.0974664880596041 0.0933085365534298 0.0909188007179242 0.098302915357369 0.0984347877343714 0.094621763843134 0.0994559536962687 0.095636231543202 0.0909188007179242 0.0951659445186663 0.0975078410482515 0.0970347778628042 0.0948176282673217 0.0946686943178768 0.0924536185030166 3 3 + 2252120 2253313 2252553.273 2252025 2253534 + gene protein_coding_gene FALSE TRUE AT3G07110.1|AT3G07110.2 60S ribosomal protein L13A (RPL13aA)|structural constituent of ribosome Identical to 60S ribosomal protein L13a-1 (RPL13AA) [Arabidopsis Thaliana] (GB:Q9SFU1); similar to 60S ribosomal protein L13A (RPL13aB) [Arabidopsis thaliana] (TAIR:AT3G24830.1); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755)|Identical to 60S ribosomal protein L13a-1 (RPL13AA) [Arabidopsis Thaliana] (GB:Q9SFU1); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) -0.339026895075007 -4.01612754047523 0.0034950506735334 1 5.27893699818552 18.3442630325880 -0.339026895075007 0.0731437612658533
AT1G07990_at 7.45667692486677 7.36893008618857 7.98427601488168 8.05707066873174 7.80945487080732 7.61131880603344 6.81498660784739 7.13478252732552 7.00404877716161 6.81535826480645 6.73981390195356 6.88586426250432 7.3054652452218 6.94244125910767 6.42628288363243 7.42433016809043 7.18777336851184 6.61685734438644 7.03525724873829 0.192120935466797 0.177851489876899 0.181739240676472 0.178690462756198 0.192584893741857 0.187756528753247 0.187751543917978 0.187317901896374 0.197630089639379 0.181197884555313 0.183464490204755 0.182987517197650 0.181407903819118 0.183052297009371 0.191507727803128 0.179701519772041 0.184965873439934 0.182796160292644 0.176652453840007 1 1 + 2482436 2482793 2482556.545 2477154 2483135 + gene protein_coding_gene FALSE TRUE AT1G07990.1 SIT4 phosphatase-associated family protein similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT3G45190.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G30470.1); similar to Os05g0592500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056496.1); similar to H0714H04.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66980.1); similar to OSJNBa0058K23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAD41753.2); contains InterPro domain SIT4 phosphatase-associated protein; (InterPro:IPR007587); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.330617422081884 4.0145980733584 0.00350275515571183 1 5.27696410794183 14.4760162222077 0.330617422081884 0.0680274118590842
AT2G14260_at 10.3700649318321 10.2300051252063 10.5353765034677 10.4555790105201 10.7221584614474 10.6254629305094 10.3763977254506 10.1966325041123 10.2893060071352 10.190696972613 10.3678536742438 10.3449901573652 10.7200678058155 10.4652943801171 10.5304069851239 10.6815403018753 10.7910624349207 10.5941408953306 10.2867236270426 0.0603640893263321 0.0605158229355414 0.0598131640387287 0.0609481551344943 0.0621159053082142 0.0624801506010137 0.0603999224881254 0.0625136228597791 0.0702082079311705 0.06223923780748 0.0626061106749326 0.0608187200070765 0.0616873320362722 0.0629335831697879 0.0658756398741477 0.0603330511601667 0.0622650687122719 0.0598131640387287 0.0615935918859739 2 0|2 /|- 6048550 6049681 6049008.25 6048335 6051056 - gene protein_coding_gene FALSE TRUE AT2G14260.1|AT2G14260.2 PIP (proline iminopeptidase); prolyl aminopeptidase encodes proline iminopeptidase Identical to Proline iminopeptidase (EC 3.4.11.5) (PIP) (Prolyl aminopeptidase) (PAP) (PIP) [Arabidopsis Thaliana] (GB:P93732;GB:Q9SKJ3); similar to proline iminopeptidase [Stigmatella aurantiaca DW4/3-1] (GB:ZP_01463931.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S33, proline iminopeptidase 1; (InterPro:IPR005944); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Peptidase S33, prolyl aminopeptidase; (InterPro:IPR002410); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.298856599293975 4.01408129443313 0.003505362461085 1 5.27629741481803 20.8477072065412 0.298856599293975 0.0450108326926232
AT2G41840_at 10.5445376995911 10.6141684094066 9.96007273991534 10.1148205687755 10.1815113894436 10.1043676621753 10.6890618521778 10.7857191392653 9.83495496090586 10.2574723179176 10.1039534162650 10.5446259536245 9.74141013403252 9.76325028890354 10.6975967276771 9.72447382316044 9.92631651057509 9.6601527773235 10.0005464392401 0.116701560891923 0.114090251533450 0.119505201486688 0.114090251533450 0.114537275537053 0.118501144425004 0.115592296731273 0.117299089022645 0.127669077692009 0.116388199873576 0.115806548130449 0.114976036496299 0.124445440627915 0.119087316900263 0.119515781122392 0.115997141837585 0.118910772207220 0.125636652329998 0.119620698965933 2 2 - 17467105 17468188 17467699.364 17466866 17468617 - gene protein_coding_gene FALSE TRUE AT2G41840.1 40S ribosomal protein S2 (RPS2C) Identical to 40S ribosomal protein S2-3 (RPS2C) [Arabidopsis Thaliana] (GB:P49688;GB:O22936); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58684.1); similar to 40S ribosomal protein S2, putative [Arabidopsis thaliana] (TAIR:AT1G58983.1); similar to 40S ribosomal protein S2 (RPS2B) [Arabidopsis thaliana] (TAIR:AT1G59359.1); similar to Ribosomal protein S5, bacterial and organelle form [Medicago truncatula] (GB:ABE90730.1); contains InterPro domain Ribosomal protein S5, eukaryotic and archaeal form; (InterPro:IPR005711); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.28947373522103 -4.01154863751488 0.00351817051115514 1 5.27302939612661 20.3998892792437 -0.28947373522103 0.0363369929243921
AT2G05170_at 6.99275186192632 7.01514492999555 6.70450966056383 6.37939295369791 6.8532888535079 6.73083237602885 6.9749720247482 6.81759649635618 5.4080974081293 6.38303155873425 7.2052131497027 7.23191132815077 6.38529363990754 6.94497109335469 6.93188396302963 6.72787908250556 6.70840575938022 6.34367874160488 5.82668417542775 0.212114799827504 0.210079149163587 0.217607009828948 0.213144431508343 0.217230204102565 0.226262331531168 0.215400498657771 0.229877527169056 0.257907925686897 0.216084219061641 0.210991579453011 0.210079149163587 0.219118961091840 0.234848747425458 0.227344263525761 0.218258732371814 0.226074317615935 0.217011840810402 0.212890791537720 2 2 + 1872529 1873201 1872919.091 1869874 1873809 + gene protein_coding_gene FALSE TRUE AT2G05170.1 ATVPS11 (Arabidopsis thaliana vacuolar protein sorting 11); transporter Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. similar to Cytochrome cd1-nitrite reductase-like, C-terminal haem d1 [Medicago truncatula] (GB:ABE88907.1); similar to vacuolar protein sorting 11 [Danio rerio] (GB:NP_001032797.1); similar to PREDICTED: similar to vacuolar protein sorting 11 [Gallus gallus] (GB:XP_417847.2); contains InterPro domain 7-Fold repeat in clathrin and VPS proteins; (InterPro:IPR000547); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.327094923316898 4.00806736071378 0.00353585758449534 1 5.26853555057893 13.1498156323372 0.327094923316898 0.0661161607303399
AT3G19540_at 6.83850572600755 6.77967739656476 5.02978672209509 5.77942606760027 6.61726196131545 6.44809255947421 6.28059143795075 5.96796250328877 6.31615360344307 5.91937277243411 5.64187168783947 5.99809244869773 5.44910696746216 5.88893393413191 5.92418146611924 5.17577519270583 5.37849021516759 5.51753413287399 6.02561032202076 0.215447657194428 0.212586211392535 0.216604375084869 0.217611501527362 0.212586211392535 0.225788436024282 0.212586211392535 0.213576944347754 0.222777415962322 0.21511132555863 0.212586211392535 0.213426040533895 0.21588034824593 0.212586211392535 0.218247072244663 0.212586211392535 0.218709916677859 0.215785780353387 0.214908467893622 3 3 + 6782156 6782611 6782390.545 6780625 6783172 + gene protein_coding_gene FALSE TRUE AT3G19540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49840.1); similar to Protein of unknown function DUF620 [Medicago truncatula] (GB:ABD33276.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) -0.481669874336468 -4.00772871578876 0.00353758317892152 1 5.26809829742546 12.0720599575825 -0.481669874336468 0.143934783108581
AT3G05650_at 6.38163512722755 6.62755725483957 6.68609842780997 6.98841478549701 5.48857498701411 4.51916787308048 3.9815458755421 4.10840295499777 5.19659459652175 4.55429566819421 5.32536942975055 6.09914445031629 4.35276489970427 5.37736495348474 5.61496460750085 4.98523217973924 4.51701458421589 6.00884700271196 4.60942406774726 0.241706440945639 0.24347526128399 0.242756455118310 0.237863000087715 0.226347828634984 0.237904173181414 0.231098528606623 0.236354051141546 0.234301904102735 0.22891850424206 0.232347145462529 0.227174578051823 0.230278905365674 0.235417677297110 0.232804798845804 0.230696515807077 0.237944030382487 0.233326756944250 0.237971332264657 3 3 - 1645931 1646458 1646174.545 1645686 1648579 - gene protein_coding_gene FALSE TRUE AT3G05650.1 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT3G05660.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to peru 1 [Lycopersicon peruvianum] (GB:AAV41395.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.572047517236106 4.00742138398112 0.0035391499937861 1 5.26770145848785 10.6336042645423 0.572047517236106 0.182136703592345
AT3G16910_at 6.8404283409008 6.84943248659692 7.14317543422485 7.44908035312491 6.7653573811361 6.43163027620264 8.18174690471251 7.90202673701608 6.60115926205026 7.34887590630462 6.40091946328787 6.22663271891503 6.94522974399667 6.7955661807426 6.51125742361958 7.61325378313046 7.33627107640219 7.08280031058663 7.38557367884281 0.207254121141652 0.207804344570614 0.205492788142836 0.220803710162809 0.204261702166449 0.210789340797976 0.207739066037696 0.220053065155458 0.231458440748218 0.216723738216116 0.216167728431780 0.213394391546819 0.208624526598116 0.211968497686556 0.223021295224938 0.203591338987239 0.207023695269153 0.226345041074118 0.216060923611782 3 3 - 5773321 5773797 5773581.727 5773061 5775507 - gene protein_coding_gene FALSE TRUE AT3G16910.1 AAE7/ACN1 (ACYL-ACTIVATING ENZYME 7); AMP binding / acetate-CoA ligase Encodes a peroxisomal protein with acetyl-CoA synthetase activity that is responsible for the activation of acetate for entry into the glyoxylate cycle. similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT1G20560.1); similar to Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1] (GB:YP_421864.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95517.1); similar to Os03g0305000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049879.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.371988017140945 -4.00696409137327 0.00354148270006311 1 5.26711095466574 14.1832902158982 -0.371988017140945 0.0921060662721983
AT1G69490_at 10.2377305464196 10.5286627066326 11.5706777106273 11.4593139092314 11.4900883928900 10.9839253272279 10.7221057719845 10.799859511958 10.9080641397828 10.553879351913 10.9465390009783 9.99011872693838 10.9128638926245 10.7791926954107 9.39734231145393 11.2416845397137 11.0826829615812 10.7276532424259 10.4873478238516 0.121586211035415 0.117319334305613 0.119771516300079 0.115074340656624 0.116696076808281 0.123397357405102 0.123791515947409 0.118169757832207 0.125524378241345 0.118248621918114 0.117361617738056 0.118486435648866 0.115074340656624 0.115074340656624 0.124644436350937 0.115074340656624 0.129846023308634 0.123473316663554 0.115074340656624 1 1 + 26126266 26126846 26126603.636 26125802 26127084 + gene protein_coding_gene FALSE TRUE AT1G69490.1 NAP (NAC-LIKE, ACTIVATED BY AP3/PI); transcription factor Encodes a member of the NAC transcription factor gene family. It is expressed in floral primordia and upregulated by AP3 and PI. Its expression is associated with leaf senescence. Identical to NAC domain-containing protein 29 (ANAC029) (NAC2) (NAC-LIKE, ACTIVATED BY AP3/PI protein) (NAP) (NAP) [Arabidopsis Thaliana] (GB:O49255;GB:Q8LD99); similar to ANAC025 (Arabidopsis NAC domain containing protein 25), transcription factor [Arabidopsis thaliana] (TAIR:AT1G61110.1); similar to NAC1 protein [Glycine max] (GB:AAX85978.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.394453800143605 4.00454862383776 0.00355383159475749 1 5.26399126440986 21.6163072062414 0.394453800143605 0.103730373132518
AT4G35270_at 7.04590249080319 7.7133346178671 6.9930462250843 7.26465114259797 7.44168721226205 7.3723718340489 7.71494946829981 8.06542639441692 6.75933838075524 7.51941607551329 6.32922746619767 6.93149649228063 6.42425732694934 6.55852372790425 5.87271131258442 7.43372607609579 7.72646188892686 6.06309411485466 7.44424484423293 0.27842486271553 0.266877699521922 0.27963939232753 0.285836601567322 0.258585911791596 0.258115388684461 0.263669219747443 0.26162576087023 0.272698038894093 0.276694069795313 0.267569673743802 0.258115388684461 0.26872061955542 0.267257371834749 0.284923575627666 0.258115388684461 0.265986130432067 0.273000835997523 0.258115388684461 4 4 - 16777710 16778061 16777927.875 16777343 16780829 - gene protein_coding_gene FALSE TRUE AT4G35270.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G17150.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.470263302729031 -4.00255239629323 0.00356407188999764 1 5.26141229752048 14.4056397069515 -0.470263302729031 0.139185185467563
AT1G64360_at 10.6733189167822 10.3019378643375 11.8572134212553 11.7972181986480 11.9348358366978 11.2092242596002 10.8963368591393 10.5659394144703 7.82441649587386 8.97909045383762 7.90427349246253 7.73338470493846 9.6715259598032 7.92813689087726 6.47988612304674 9.68844061323601 10.0302270956688 8.14213162378214 8.80520781504881 0.160700703802729 0.154957624139647 0.164987969279254 0.161816142560031 0.162208283816533 0.157712044542660 0.160947421360804 0.156782090293067 0.158221186658814 0.160999305810489 0.173355102254535 0.160617036617436 0.156251829575573 0.165238273299137 0.169497841546284 0.154957624139647 0.162056198585090 0.171321887910338 0.166133011702549 1 1 + 23891629 23891812 23891722.818 23891533 23892196 + gene protein_coding_gene FALSE TRUE AT1G64360.1 unknown protein 0.500626111712391 4.00017182055876 0.00357632506759414 1 5.25833590261646 19.6462476303148 0.500626111712391 0.152562968290920
AT2G38650_at 5.33837288369548 5.77762765902466 4.8751814443318 4.87397227825734 5.82258992695837 5.21274600268544 6.48794410701903 6.4984013764723 6.2726514513368 6.26894056323005 6.48187581242394 6.87322384273379 6.33306100285545 6.44844977003601 6.02109427958431 6.11741479146215 5.90538051875032 5.91373318042355 6.45111939609261 0.205748257290766 0.199186403797202 0.20538037726667 0.214373769809135 0.213197811682692 0.199958024343178 0.212579352018450 0.20273231302084 0.206793793948671 0.211778939421413 0.205099579132799 0.202805495697716 0.199186403797202 0.201485868340129 0.215655186166575 0.206917643180645 0.218221646042305 0.212848398614727 0.215663705262408 2 2 - 16169012 16169584 16169347.364 16168886 16172853 - gene protein_coding_gene FALSE TRUE AT2G38650.1 GAUT7/LGT7 (Galacturonosyltransferase 7); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to putative glycosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAT01328.1); similar to Os03g0330000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050007.1); similar to Os07g0681700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060656.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.44929437363205 -3.99694102893438 0.0035930264908136 1 5.25415925034319 11.9071959364740 -0.44929437363205 0.130075094908900
AT3G53730_at 10.3486591099807 10.4582744187007 10.2881932361100 10.5450970842033 10.8183036400545 10.5939264778763 10.3005558173708 10.3030893539948 10.0723545398697 10.0728432384775 10.5855286519589 10.9332455891119 10.1675136834017 10.3653944057226 10.9153938186603 10.6152306571827 10.1860545639813 9.92428075206245 9.94591056990398 0.0966629444637186 0.096150515175710 0.103175210024904 0.0949324498779559 0.0946418082356122 0.102154640923611 0.094243015494466 0.0950414171285092 0.096714107274526 0.0951183162192835 0.095172728874691 0.0923190919931057 0.09708427203476 0.0962244493639673 0.0930954646141504 0.092179658706148 0.0925788018525356 0.100295791993205 0.0937568245757071 3 3 - 19923637 19923887 19923765 19923472 19924011 - gene protein_coding_gene FALSE TRUE AT3G53730.1 histone H4 Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G45930.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Nicotiana tabacum] (GB:BAF36442.1); similar to Os01g0835900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044729.1); similar to Histone H4 homologue [Sesbania rostrata] (GB:CAB01913.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H4; (InterPro:IPR001951); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.319973125196228 3.99683581042535 0.0035935718123453 1 5.25402319796273 20.702987249625 0.319973125196228 0.0620025259280083
AT4G18120_at 6.91505199221174 6.77225434147499 7.4383553056452 6.98532178932679 7.83766054489816 7.08957907784586 6.48802722271118 5.89922003570089 5.48846550222258 6.5647704837806 6.55431491108171 6.46493444977158 6.59323550987528 6.47879006209734 5.75421250449311 6.98046125484912 6.60755136465176 6.54765634747587 6.44548041381024 0.170603015417315 0.176507683434401 0.174064845755698 0.175799196561481 0.174730182999600 0.187678534496390 0.171034676051633 0.174258865363457 0.188174397218178 0.180360487690962 0.183283162096912 0.170309137277116 0.172932509423224 0.181699664720009 0.194293917586051 0.169084965213606 0.187085719359212 0.180051012500205 0.179636121940284 4 4|0 +|/ 10041273 10041973 10041703.1 10038138 10042260 + gene protein_coding_gene FALSE TRUE AT4G18120.1 AML3 (ARABIDOPSIS MEI2-LIKE); RNA binding A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML3 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. Among mei2-like genes, AML3 is the transcript with highest frequency of alternative splicing. Expression was detected during early embryo development (heart and torpedo stage); no accumulation was detected in vegetative and floral apices, as revealed by in situ hybridization. similar to AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G29400.2); similar to AML1 [Medicago truncatula] (GB:AAT38998.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.575248266001735 3.99609475041529 0.00359741504916218 1 5.25306492027938 13.2601254639642 0.575248266001735 0.184118314889371
AT4G09650_at 11.9595340673509 12.1753476983983 11.4194719627641 11.5075886102328 11.4929692763182 11.3893205258576 12.7840815303890 12.8579743015272 12.6150711806807 12.6474697002313 13.0953250006349 13.2830046553480 12.7991567020527 12.9083437700476 13.3886640985699 12.9660268031695 12.3259618920768 12.9552898556600 12.4483175874224 0.0680889234719059 0.0680913910384267 0.068526334705633 0.0696045561101777 0.0659622838999978 0.0715931067023425 0.0683506208762726 0.0713109117769472 0.0732679579552758 0.068546495322505 0.0692438792101932 0.066276425978478 0.0726857558751424 0.074246182374334 0.0669192062941159 0.0659622838999978 0.0672352073704997 0.0699336536857035 0.0699865907785256 4 4 + 6100919 6101456 6101132.273 6100740 6101705 + gene protein_coding_gene FALSE TRUE AT4G09650.1 ATP synthase delta chain, chloroplast, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative similar to ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative [Arabidopsis thaliana] (TAIR:AT5G13450.1); similar to ATP synthase delta chain, chloroplast precursor (GB:P32980); contains InterPro domain ATPase, F1 complex, OSCP/delta subunit; (InterPro:IPR000711) -0.298480682269880 -3.99419257272539 0.00360730011843254 1 5.25060475661337 24.7160398732580 -0.298480682269880 0.0459632900412511
AT4G16860_at 10.8993307707153 11.0017787203789 10.8562607764698 10.7656713196940 10.9627303803375 10.7503750119251 10.3903529149990 10.5049115095845 10.7860694908624 10.8385312615227 10.2803318961821 10.1460988202155 10.0767019807443 10.4143596539304 9.3812787376597 10.4390547034417 9.97688716896268 10.0492141138452 10.8708463807458 0.111736284977573 0.112743856215985 0.112766110554831 0.111062628013466 0.110623893461089 0.11109182004407 0.115736280114312 0.112088619673205 0.114675242173512 0.111520255084479 0.115444232314303 0.110581196418394 0.113333641210615 0.115019716472692 0.119297344788930 0.109323273662604 0.115320307616787 0.114372184822618 0.110229956733887 4 4 - 9488610 9489167 9488817.364 9488485 9495835 - gene protein_coding_gene FALSE TRUE AT4G16860.1 RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) Confers resistance to Peronospora parasitica. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.300829466741875 -3.99323563019951 0.00361228404292088 1 5.24936687311634 21.2300797232212 -0.300829466741875 0.0479959259554745
AT4G13520_at 10.3250618494361 10.3635165879426 10.2780252671052 10.4651060509707 10.7099209853658 10.3720751521642 10.1131045985611 10.3100159516543 10.1248370540365 10.1818184263651 10.7895468035946 10.8279077079539 10.6115996444743 10.7673750686531 10.8075868831686 10.6849946394530 10.5363695437765 10.5665613650623 10.2823237284013 0.0851361632776563 0.077936601479096 0.0817928402968188 0.0798109557925194 0.0834440361929286 0.089617533454686 0.0813791984777402 0.0807289194299972 0.0919364552490277 0.0799146447240118 0.0830093588411613 0.0839013029989447 0.0811427645149817 0.0833382533958705 0.081956725701839 0.0815345970451182 0.0857336692460432 0.0813429781743133 0.0783489550420982 4 4 + 7864458 7864620 7864532.545 7864390 7864920 + gene protein_coding_gene FALSE TRUE AT4G13520.1 SMAP1 (SMALL ACIDIC PROTEIN 1) Encodes a small acid protein (SMAP1) that mediates responses Arabidopsis root to the synthetic auxin 2,4-Dichlorophenoxyacetic acid. similar to SMAP2 (SMALL ACIDIC PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT3G24280.1) 0.340511710542813 3.99101946906489 0.00362385447111307 1 5.24649949414042 20.8147628603757 0.340511710542813 0.0753119650366831
AT1G75950_at 11.8316000100159 11.8514784334681 11.9714372934825 11.9832571177707 12.1350200619853 11.9750967303972 11.6894542250888 11.8208468302916 11.4925741107311 11.3989152954833 11.9788351308080 11.7323197189565 11.8891012553205 11.6558402914907 11.8877015611173 11.7462845975562 11.5857356898119 11.7133788439596 11.3568099750227 0.0638818892888052 0.0646902778525815 0.0625415834837667 0.0648095673433686 0.067559764213354 0.0647961178329213 0.0625460271388874 0.064428564525849 0.070780177892456 0.0633784264994962 0.0635181166284201 0.0641150360806672 0.0619512388526627 0.0650874535990676 0.0627304161457822 0.0619512388526627 0.0690195567671233 0.0656661429842902 0.0619512388526627 1 1|0 +|/ 28520439 28521025 28520638.1 28520209 28521360 + gene protein_coding_gene FALSE TRUE AT1G75950.1 SKP1 (ARABIDOPSIS SKP1 HOMOLOGUE); ubiquitin-protein ligase SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. Identical to SKP1-like protein 1A (SKP1-like 1) (UFO-binding protein 1) (SKP1A) [Arabidopsis Thaliana] (GB:Q39255;GB:P92992); similar to ASK2 (ARABIDOPSIS SKP1-LIKE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42190.1); similar to kinetochore protein [Brassica juncea] (GB:BAB85607.1); contains InterPro domain SKP1 component; (InterPro:IPR001232) 0.287703884287365 3.99093041874098 0.00362432022363875 1 5.24638425911347 23.5021485527492 0.287703884287365 0.0360412455242931
AT2G23340_at 5.27689322315668 5.0522363805317 5.02355738139217 4.36457963873215 5.09384977767398 4.72511934810232 7.44603878857772 6.35711340212666 6.16947056569182 6.35954156911106 5.84845695436471 6.48460617067215 5.5760720288834 5.58762870950165 5.69385489961519 6.52470148788317 5.87844384569371 5.6392832644629 5.65981401355133 0.251582513487911 0.252966537001805 0.246906482522324 0.254946819701932 0.245649439836292 0.244725053987241 0.251248649984202 0.262640285220419 0.248861712143483 0.248465276555456 0.241601864530990 0.243812412000106 0.24455430488876 0.248211657939800 0.255954108650717 0.241601864530990 0.245740761212327 0.246887944678246 0.245933955938860 2 2 + 9945267 9945706 9945499.818 9945078 9945955 + gene protein_coding_gene FALSE TRUE AT2G23340.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. similar to RAP2.10 (related to AP2 10), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36900.1); similar to Os04g0648900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054079.1); similar to H0721B11.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86045.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) -0.695052520719914 -3.99020190489718 0.00362813291196129 1 5.24544148001856 11.4009599773297 -0.695052520719914 0.232592356073714
AT3G24140_at 5.29049068290575 5.42974893094613 4.3280645850457 4.83530983531625 5.59818423887075 5.11035641218471 4.56910189071932 4.76672498609707 3.94433910899537 3.76269424748566 5.1684132977393 5.65545061981856 4.92975247657176 4.13728424759655 5.06497738906624 5.04498633650486 4.94343741779888 4.69342875588666 4.34540731619446 0.239039605236627 0.235487911881652 0.246698858949024 0.247167137208732 0.241056921270285 0.23786642813475 0.242841304858744 0.238704951917517 0.259796902696742 0.249275293082448 0.238828525890909 0.241326580379664 0.240580778160679 0.248171714160964 0.239670877712276 0.238738133091495 0.243921981037706 0.244601139343216 0.235487911881652 3 3 - 8716413 8717035 8716639.273 8715243 8718218 - gene protein_coding_gene FALSE TRUE AT3G24140.1 FMA (FAMA); DNA binding / transcription factor/ transcriptional activator Encodes a basic helix-loop-helix transcription factor whose activity is required to promote differentiation of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Both transcript and protein are expressed in and are required for halting divisions at the end of the stomatal lineage. It also has a role in the promotion of guard cell fate. similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G01460.1); similar to helix-loop-helix DNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19748.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.445599119292485 3.98946346604440 0.00363200191665847 1 5.24448576553176 9.47709596618472 0.445599119292485 0.128774239412026
AT4G08470_at 9.67773356101037 9.8807494204771 9.9547132747183 9.89733734208955 9.93683219698554 9.38264034053855 7.83732712018019 7.48737759277508 9.16103308794835 8.059376550383 8.36977374827319 8.4244584241853 8.40014804478568 8.50398745576544 7.7463310900732 8.17433353059634 8.0456607973764 8.68045280231407 8.32634412885797 0.138741097773971 0.135395648347031 0.143025743461764 0.139237877335667 0.138795230139095 0.137532285626691 0.135336777804627 0.152314386986272 0.140833642504124 0.139457956031534 0.137051295035755 0.133542512285564 0.134875999957969 0.145486838458809 0.136698643057145 0.140548422044309 0.143745186751106 0.141339597798445 0.146927359488614 4 0|4 /|- 5384035 5385084 5384722.167 5383849 5387055 - gene protein_coding_gene FALSE TRUE AT4G08470.1 MAPKKK10 (Mitogen-activated protein kinase kinase kinase 10); kinase member of MEKK subfamily similar to MEKK1 (MYTOGEN ACTIVATED PROTEIN KINASE KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G08500.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06421.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.424821256290194 3.98933064827342 0.00363269827477645 1 5.244313858177 17.661202768964 0.424821256290194 0.119156740991617
AT2G19340_at 5.81891674830067 6.69712200868822 6.36090714566483 6.55896611787347 6.94526986841085 7.01293232824193 6.19195802168812 6.16025594510007 4.89330351002755 5.32965640835357 5.58840749803643 5.91756396448502 5.96765408590078 5.69497731291228 5.54743264220897 5.81772639375701 5.71620599429638 5.62475249169697 5.43960904943101 0.240424968290491 0.238895751378878 0.236231188224017 0.239519072738694 0.239871971760071 0.239417948004297 0.243999520307201 0.242557806370425 0.248256481821563 0.23704058290744 0.234991720635714 0.234991720635714 0.234991720635714 0.243498529700161 0.256615051921268 0.236332694887051 0.259015366129972 0.243308145483618 0.247581335166027 2 2 - 8382379 8382851 8382681.091 8380848 8383021 - gene protein_coding_gene FALSE TRUE AT2G19340.1|AT2G19340.2 membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29870.1); similar to Os02g0315400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046663.1); similar to hypothetical protein DDBDRAFT_0204707 [Dictyostelium discoideum AX4] (GB:XP_641827.1); contains domain SUBFAMILY NOT NAMED (PTHR13160:SF2); contains domain FAMILY NOT NAMED (PTHR13160) 0.507969704705592 3.98889475500585 0.00363498464774268 1 5.24374965631797 11.9458892082539 0.507969704705592 0.156330256544385
AT3G54190_at 7.70020240308185 8.16452736652219 8.10471832242416 8.37313264386884 9.07282482037573 8.37685648700298 8.19540662174233 7.89241874458955 6.88227470021751 6.82708080412504 7.26165665913079 7.3986973082659 7.71799393546359 7.18346775381074 7.31808832987647 7.51734745022036 7.32573215268215 7.05754259253976 6.70638227419851 0.195070559857547 0.186845818293280 0.191698411553318 0.187449669284395 0.190054954432376 0.194181819085651 0.186388194764528 0.196629416779288 0.203706617694742 0.204940850875976 0.191581088463399 0.192035993190644 0.190903124604900 0.195850729317874 0.186674017898296 0.191311722896900 0.210694419370805 0.196419784602627 0.192290456959666 3 0|3 /|- 20072744 20073295 20073143.6 20072506 20075132 - gene protein_coding_gene FALSE TRUE AT3G54190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38630.1); similar to Os01g0817800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044626.1); similar to Os05g0482600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055867.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56876.1); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.51803206550116 3.98507490655483 0.00365508663575141 1 5.23880403611075 15.3114167756655 0.51803206550116 0.160840089334688
AT1G04590_at 6.9380309497232 6.63993217714623 6.53313278462136 6.35669156385912 6.3925286945729 6.84300236367136 6.8928879644675 7.20992848107097 6.33925485232261 6.34570229308347 5.81377259231246 6.27205054671679 5.36132140457948 6.16046350127016 6.29911982263476 5.86231080886033 6.22487536504416 5.76587278177533 6.52077377552062 0.185170795623975 0.183506424134084 0.179378253804924 0.183118892065737 0.187822565471875 0.184812749546229 0.190800183293033 0.177437851349081 0.181013269490912 0.177437851349081 0.178225618846313 0.179218639218282 0.196681540253584 0.180756871279169 0.180644681440623 0.179518231397009 0.183251647511582 0.184173177515516 0.178020055425442 1 0|1 /|- 1259070 1259514 1259322.3 1258576 1261425 - gene protein_coding_gene FALSE TRUE AT1G04590.1|AT1G04590.2 EMB2748 (EMBRYO DEFECTIVE 2748) similar to EMB1417 (EMBRYO DEFECTIVE 1417) [Arabidopsis thaliana] (TAIR:AT4G21190.1); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os11g0125500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065620.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.2); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os11g0125500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065620.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains domain TPR-like (SSF48452) -0.410396497748584 -3.98285780843019 0.00366680857910689 1 5.23593239595425 12.9117087023290 -0.410396497748584 0.112610008489669
AT4G15530_at 10.8721119639176 10.8526689936743 11.5337581653291 11.4596977543587 10.6720333796676 10.6429404628361 11.3413576289278 11.4487883622365 10.5357420826476 11.1048264203293 10.0711966762303 9.49752292598997 10.459152418432 10.5841895664758 9.01172963486926 11.0848084135472 11.0122210944500 10.4271770350608 10.6722382739019 0.0811065307733349 0.0782663076714861 0.0821573399730714 0.0785435278801375 0.078006270037486 0.0820458393335576 0.0769376356547349 0.0799033156839922 0.0816793059520903 0.0803121120617472 0.0776466250574005 0.0779585200307497 0.0773161220822638 0.0782740878544413 0.0889997515980818 0.0766154963166139 0.0839383765832448 0.0826423457531165 0.0792559916440462 4 4|0 -|/ 8864837 8865618 8865240.667 8864826 8870934 - gene protein_coding_gene FALSE TRUE AT4G15530.1|AT4G15530.2|AT4G15530.3|AT4G15530.4|AT4G15530.5 PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase/ pyruvate, phosphate dikinase|PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE); kinase|PPDK (PYRUVATE ORTHOPHOSPHATE DIKINASE) The product of this long transcript was shown to be targeted to the chloroplast, whereas the shorter transcript (no targeting sequence) accumulates in the cytosol. They were also found in slightly different tissues.||The product of this shorter transcript (no chloroplast targeting sequence) was shown to accumulate in the cytosol, whereas the longest transcript was found in the chloroplast. They were also found in slightly different tissues. similar to Pyruvate, phosphate dikinase, chloroplast precursor (Pyruvate, orthophosphate dikinase) (GB:Q42910); similar to Pyruvate, phosphate dikinase, chloroplast precursor (Pyruvate, orthophosphate dikinase) (GB:Q42736); similar to Pyruvate, phosphate dikinase, chloroplast precursor (Pyruvate, orthophosphate dikinase) (Cold-sensitive pyruvate, orthophosphate dikinase) (GB:Q39734); contains InterPro domain PEP-utilizing enzyme; (InterPro:IPR000121); contains InterPro domain Pyruvate phosphate dikinase, PEP/pyruvate-binding; (InterPro:IPR002192); contains InterPro domain Pyruvate, phosphate dikinase; (InterPro:IPR010121); contains InterPro domain PEP-utilising enzyme, mobile region; (InterPro:IPR008279) -0.277030084151111 -3.98261676298801 0.00366808542056535 1 5.23562013808821 21.6226372453309 -0.277030084151111 0.0233788677220795
AT1G48410_at 10.0093165855361 9.80819516671055 10.0708405875655 10.0785718575698 10.5772012302854 10.4064277662279 9.96557148649643 9.9316071301798 10.0292689319574 9.83031527637141 10.2531054824753 10.1798524366528 10.2534057217884 10.1329514788217 10.0825787704606 10.1193258840921 10.0995315871660 10.2787047086008 9.94287470198936 0.0789447171617186 0.0784872633749306 0.0812899560059786 0.0818431581741145 0.0800533679050253 0.0781278238266519 0.0818128949540306 0.0816795391071496 0.0841492611619507 0.082352126874229 0.0828283249181748 0.0780236088262122 0.0796533892524289 0.079044150854848 0.0774863256723122 0.0764398841946915 0.0839808003400603 0.0819526566126086 0.081326954364783 1 0|1 /|- 17889953 17890797 17890409.375 17889766 17896254 - gene protein_coding_gene FALSE TRUE AT1G48410.1|AT1G48410.2 AGO1 (ARGONAUTE 1) Encodes an RNA Slicer that selectively recruits microRNAs and siRNAs. There is currently no evidence that AGO1 Slicer is in a high molecular weight RNA-induced silencing complex (RISC). Mutants are defective in post-transcriptional gene silencing and have pleiotropic developmental and morphological defects. Through its action on the regulation of ARF17 expression, the protein regulates genes involved at the cross talk between auxin and light signaling during adventitious root development. Identical to Protein argonaute (AGO1) [Arabidopsis Thaliana] (GB:O04379;GB:Q9LP83); similar to argonaute protein, putative / AGO, putative [Arabidopsis thaliana] (TAIR:AT2G27880.1); similar to ZLL (ZWILLE) [Arabidopsis thaliana] (TAIR:AT5G43810.1); similar to AGO1-1 [Nicotiana benthamiana] (GB:ABC61502.1); similar to AGO1 homologous protein [Oryza sativa (japonica cultivar-group)] (GB:BAB96814.1); similar to AGO1-2 [Nicotiana benthamiana] (GB:ABC61503.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) 0.297683403416306 3.98208235651098 0.00367091791846065 1 5.23492781622033 20.1605089657531 0.297683403416306 0.0460555495232122
AT3G60480_at 6.08134310066456 5.37964491926721 5.12709215365417 5.10098746535164 5.543426499773 5.27431322546367 4.98823825967726 5.65546460592779 6.45309741098238 6.15654315991325 5.39672325748896 5.28848584493474 5.24639096415109 5.92774369248931 5.56734212210354 5.40362747566698 5.03191575668446 5.08377556483819 5.99293581190969 0.194482994852794 0.195935560013582 0.194346906512591 0.202323002620772 0.192410270059954 0.205451546462580 0.194506803707203 0.192837869679491 0.205977965669320 0.194071076747062 0.191233138844683 0.191233138844683 0.193388197402533 0.191233138844683 0.197039433775720 0.194703756784151 0.197502709698553 0.197014233856964 0.198737415736095 3 3|0 -|/ 22358756 22359154 22359021.9 22358426 22359214 - gene protein_coding_gene FALSE TRUE AT3G60480.1 similar to Os04g0549400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053483.1) -0.548663047398684 -3.98118504614058 0.0036756791611714 1 5.23376524545104 11.1783684682540 -0.548663047398684 0.173975869052160
AT1G08620_at 7.67693621110944 7.9109123198775 8.19870092362303 8.4043176722002 8.64081533430976 8.53016931484534 7.82763268521265 7.53589612802315 7.25033141145103 6.70564820780989 6.95780773125402 7.0340876834224 6.66537737119935 7.00495087329613 6.48898102850485 7.53892912166039 7.51019978702135 6.84857795597893 7.13147015032303 0.182706820582363 0.183988478764673 0.183394681436280 0.189279026431354 0.188821018185721 0.193191925555556 0.182588731588124 0.188371898700527 0.200795750831086 0.194635114370012 0.184801221400924 0.184694306221161 0.188446703564946 0.182097207779642 0.184081736737488 0.184345659545269 0.18602260847343 0.180372960784517 0.194327613664188 1 1|0 +|/ 2742268 2743349 2742903 2737557 2743727 + gene protein_coding_gene FALSE TRUE AT1G08620.1 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G20400.2); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.341310248018213 3.98098928152135 0.00367671878943847 1 5.23351159143929 15.1083045072685 0.341310248018213 0.076296468298435
AT4G18710_at 9.51479033913764 9.23720753699285 9.25008062243523 9.28247797414403 9.9420238734734 9.90563845571214 9.35261254427555 9.41813860171622 9.72547483115613 9.31799559330146 10.0398806630053 9.81432672103717 10.0379438311314 9.83954136190492 9.72824278949462 9.81944188791075 9.69983831562862 9.98772680557506 9.39780999467208 0.106611999529795 0.102225002608958 0.113557361958145 0.108499712171534 0.106641101576506 0.109784169385108 0.107697001979826 0.0997800980171383 0.103830593440402 0.105247050575092 0.105266012316615 0.102006542750433 0.106297708709202 0.108299627631577 0.102136969811397 0.0997800980171383 0.108859876925587 0.107101372286503 0.100532328907880 4 4|0 +|/ 10298027 10298829 10298343.444 10296284 10299373 + gene protein_coding_gene FALSE TRUE AT4G18710.1 BIN2 (BRASSINOSTEROID-INSENSITIVE 2); kinase ATSK (shaggy-like kinase) family member that encodes an AtSK protein involved in the cross-talk between auxin and brassinosteroid signaling pathways. BR-INSENSITIVE 2 mutant indicated that the BR-insensitive dwarf phenotype was due to a semidominant mutation in the BIN2. BIN2 is not allelic to BRI1. Identical to Shaggy-related protein kinase eta (EC 2.7.11.1) (ASK-eta) (BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1) (ASK7) [Arabidopsis Thaliana] (GB:Q39011;GB:Q8S9H8;GB:Q9SN42); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) [Arabidopsis thaliana] (TAIR:AT2G30980.1); similar to GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G06390.2); similar to shaggy-like kinase etha (OSKetha) [Oryza sativa (japonica cultivar-group)] (GB:CAA73848.1); similar to putative shaggy-like kinase dzeta [Oryza sativa (japonica cultivar-group)] (GB:BAA92966.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80751.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.302404483247531 3.98028371578455 0.00368046837627008 1 5.23259732996035 19.1635185451547 0.302404483247531 0.050072153086386
AT1G71140_at 5.79793195045021 5.64682928092945 6.79524095229307 6.14195385930428 6.51112837709759 6.4510754678682 6.93769747992203 6.95955415415062 6.16159799595231 7.16440035885767 5.52450791334683 5.3056009273477 6.02624846580872 5.52357290323509 5.19149566173021 6.08479316945126 5.70570985594114 5.12454441938881 6.2836698083492 0.259509899294682 0.250227564361510 0.251564712988876 0.250409938224017 0.254292610170503 0.264055926951414 0.255687131429742 0.25231547258559 0.275565919734411 0.250227564361510 0.253380877341812 0.252407741815323 0.250227564361510 0.266887352948187 0.250227564361510 0.250227564361510 0.266645934098246 0.264668538714713 0.250227564361510 1 0|1 /|+ 26829554 26830183 26829899.444 26828339 26830410 + gene protein_coding_gene FALSE TRUE AT1G71140.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); similar to Os01g0684900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043893.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.418200221038734 -3.9785265589521 0.00368982419694772 1 5.23032006866964 12.4538590497107 -0.418200221038734 0.116564887712909
AT1G22020_at 5.76402074894548 6.16948552525719 6.54465150804989 6.7506913581861 6.3437273135826 6.63113953611845 6.1326926112873 6.24048956482561 5.6996883249825 5.61706862211079 5.99561490708614 5.50058489309783 6.16888465240557 5.66584279001715 5.72561239579914 6.01380645888155 6.3346536543384 5.67897772921196 5.56435994754305 0.201136614482526 0.199588998836658 0.200708607215226 0.19786881874927 0.19772536061089 0.193648805965399 0.196094327243773 0.195411765802716 0.209800436891297 0.196698792983256 0.195258758892488 0.193648805965399 0.204529529917678 0.206564423512622 0.201566990754970 0.193648805965399 0.20162054691402 0.214626713758212 0.201718100865778 1 1 + 7755992 7757045 7756455.091 7754310 7757372 + gene protein_coding_gene FALSE TRUE AT1G22020.1 SHM6 (serine hydroxymethyltransferase 6); glycine hydroxymethyltransferase Encodes a putative serine hydroxymethyltransferase. similar to SHM7 (serine hydroxymethyltransferase 7), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT1G36370.1); similar to Os01g0874900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044960.1); similar to Os05g0429000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055615.1); similar to Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97575.2); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) 0.374669268315651 3.97767410481339 0.00369437215976422 1 5.22921510787506 12.0783803457733 0.374669268315651 0.0949564160656554
AT2G20830_at 6.6070037501434 6.45449149037143 6.66041198945453 6.3243101453605 7.27927717056565 7.04010943081361 7.40925738932713 7.70761695830625 6.98781922770345 7.15446617470762 6.51853148931391 6.0909740384782 6.40578371700746 6.90278604267042 6.70862106696846 6.99423504287177 6.83852709831813 6.57359671235376 7.30202505230461 0.176952985610906 0.174836700114671 0.176744518637638 0.171915666403629 0.182775043022813 0.182138036300286 0.178579412476203 0.188050589539361 0.174204442510854 0.171915666403629 0.174415524301323 0.174639964685773 0.173580423031106 0.185737531524655 0.172063115358939 0.174674376539218 0.180021168674885 0.177715308804983 0.173930797380198 2 2|0 -|/ 8975488 8976516 8975795.333 8975292 8977711 - gene protein_coding_gene FALSE TRUE AT2G20830.1|AT2G20830.2 folic acid binding / transferase similar to formiminotransferase-cyclodeaminase-like [Oryza sativa (japonica cultivar-group)] (GB:BAA83349.1); contains InterPro domain Formiminotransferase, N-terminal; (InterPro:IPR012886)|similar to formiminotransferase-cyclodeaminase-like [Oryza sativa (japonica cultivar-group)] (GB:BAA83349.1); contains InterPro domain Protein of unknown function DUF1715, eukaryotic; (InterPro:IPR013179); contains InterPro domain Formiminotransferase, N-terminal; (InterPro:IPR012886) -0.368768398447973 -3.97502045736988 0.0037085681148855 1 5.22577463794983 13.8239274834943 -0.368768398447973 0.0919707113411044
AT1G61660_at 7.01459080304479 6.6072873026354 8.1241510987244 7.75017855850035 7.62146277026775 7.23368003974287 8.56491126758981 7.29873508140872 5.49273530515624 7.00265554584165 7.83378630987008 7.35752490838583 7.42799704191703 7.52920271150327 7.18786512126713 7.73616833915465 8.40798826270093 7.04654129958625 6.74149749962802 0.215692784830662 0.22410879497233 0.240994376751806 0.226207479846405 0.226418415860025 0.235381907839619 0.222536609271641 0.226309853866320 0.271988681776232 0.225359126071354 0.223342588328536 0.215692784830662 0.224737430657311 0.241042579947469 0.221268029679113 0.218302960717401 0.239510569358578 0.240059927768338 0.225434208270482 1 1|0 -|/ 22758055 22759095 22758652.8 22757380 22759960 - gene protein_coding_gene FALSE TRUE AT1G61660.1|AT1G61660.2 basic helix-loop-helix (bHLH) family protein similar to ethylene-responsive protein -related [Arabidopsis thaliana] (TAIR:AT3G20640.1); similar to 3063 (GB:AAD21412.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.732287567781003 3.97438056232819 0.00371200000964866 1 5.22494483313633 14.515964798326 0.732287567781003 0.248339724483844
AT3G46130_at 7.47632031139887 7.19129867582908 8.44252495882769 7.75440099262399 8.5713374414233 8.2057249973059 8.98481033580425 8.50693368412286 8.61027788821652 8.98911129012508 7.67689615937074 7.14943251360922 7.74480009594396 7.7546061129108 6.10246195053028 7.6999406610573 8.22159139106802 7.24384926122369 8.52551756472218 0.143042617284029 0.146387426075258 0.142738139659302 0.139300084397008 0.143679584864187 0.141645376720108 0.145170317094088 0.151514960575208 0.153314613583077 0.146029267962929 0.150624157826582 0.145034326906777 0.149811368587512 0.144223324742657 0.161164890176904 0.143264413309055 0.139362457974192 0.145912292891461 0.141894711552489 3 3 + 16956682 16957336 16957135.455 16956349 16957446 + gene protein_coding_gene FALSE TRUE AT3G46130.1|AT3G46130.2|AT3G46130.3 MYB111 (myb domain protein 111); DNA binding / transcription factor|MYB111 (myb domain protein 111); DNA binding|MYB111 (myb domain protein 111) Encodes a putative transcription factor (MYB48). Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3); similar to MYB59 (myb domain protein 59), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G59780.3); similar to MYB transcription factor MYB139 [Glycine max] (GB:ABH02860.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Transcription factor MYB48 (Myb-related protein 48) (AtMYB48) (MYB48) [Arabidopsis Thaliana] (GB:Q9LX82;GB:Q4JL82;GB:Q67YJ3); similar to MYB59 (myb domain protein 59), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G59780.2); similar to MYB transcription factor MYB139 [Glycine max] (GB:ABH02860.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.527724316858609 -3.97181648972553 0.00372578574835112 1 5.22161909842802 16.2204186826181 -0.527724316858609 0.165698415410509
AT2G46370_at 8.04387008511874 8.22380049491215 8.44793322747665 8.44222924331065 8.45118607360949 8.17750053413912 8.38216351215315 8.53634277819694 7.3420366025122 7.83828123642792 8.39508172249887 8.41630219247078 8.05880734295061 8.15594965844498 8.01368997584148 8.270801912515 8.04036743650198 7.94338520460005 7.641778896893 0.1597871146697 0.165332940076696 0.168341359374067 0.175289680266583 0.166131653029195 0.167008203719125 0.167239532538103 0.161994270484264 0.183371552573458 0.167809343908401 0.160975259466445 0.159341079252189 0.171223744136994 0.162305718128019 0.162605682482946 0.163801756477654 0.171883119894175 0.167004096639979 0.174997957091204 2 0|2 /|+ 19042955 19043415 19043165.2 19040860 19043732 + gene protein_coding_gene FALSE TRUE AT2G46370.1|AT2G46370.2|AT2G46370.3 JAR1 (JASMONATE RESISTANT 1) An auxin-induced gene encoding a cytoplasmic localized phytochrome A signaling component protein similar to the GH3 family of proteins Loss of function mutants are defective in a variety of responses to jasmonic acid. similar to DFL2 (DWARF IN LIGHT 2) [Arabidopsis thaliana] (TAIR:AT4G03400.1); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); similar to putative auxin-regulated protein [Nicotiana glutinosa] (GB:BAE46566.1); similar to putative Nt-gh3 deduced protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81367.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993)|similar to DFL2 (DWARF IN LIGHT 2) [Arabidopsis thaliana] (TAIR:AT4G03400.1); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); similar to putative auxin-regulated protein [Nicotiana glutinosa] (GB:BAE46566.1); similar to Os05g0586200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056460.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.31880032707783 3.97020694295526 0.00373446740641381 1 5.21953086928179 16.2227101232841 0.31880032707783 0.0626549921229303
AT4G26750_at 4.96031965725453 5.09511181779575 5.10349828262803 5.43230349742672 6.22648737599256 5.66485981553537 4.72252241850928 4.32098353336261 5.07889049939818 4.43595310690413 4.73452486118966 4.22220490727891 4.74781877961436 4.46998577557934 4.25910413200727 4.74394333222238 5.3089670670047 4.96253030275175 4.29051732804646 0.193576432725577 0.196664033163277 0.204540691075378 0.197142309176115 0.219693450474374 0.198328829137163 0.204862672155869 0.191772665366387 0.199426088813216 0.191772665366387 0.191772665366387 0.197484338915988 0.191772665366387 0.191772665366387 0.194837512301222 0.191827703344457 0.196759869905085 0.197143909466573 0.195483259174653 4 4 - 13475867 13476427 13476151.909 13475700 13478529 - gene protein_coding_gene FALSE TRUE AT4G26750.1 hydroxyproline-rich glycoprotein family protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to Os06g0308800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057476.1); similar to hypothetical protein CC1G_01853 [Coprinopsis cinerea okayama7#130] (GB:EAU92808.1); contains InterPro domain Protein of unknown function DUF605; (InterPro:IPR006745) 0.455700401377459 3.96974407579876 0.00373696804170349 1 5.21893026404682 9.83222173622426 0.455700401377459 0.134375669289799
AT3G20240_at 5.33047739984301 5.54802893684201 4.93807545101126 4.74780219819821 4.79562398125838 4.93312680438236 5.94247864615006 5.83533521630718 4.0808029599993 4.60807968456198 4.24335586225884 4.54592193145021 4.65167518082283 4.27837308388705 4.73711355077539 4.58165877795153 5.41189812575699 4.38560272448223 4.56874064007917 0.21527718895757 0.199680504054842 0.205093091895834 0.214334219039016 0.201379957048527 0.206585473649472 0.218168580928090 0.20012760039945 0.205774532626143 0.201459806517623 0.200732467856348 0.198701409684300 0.219520261745325 0.199091838016122 0.207707061854503 0.200939541414772 0.201880646461826 0.201256666256271 0.202976440341967 3 3 + 7057944 7058680 7058267.909 7057017 7058897 + gene protein_coding_gene FALSE TRUE AT3G20240.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT4G32400.1); similar to Adenine nucleotide translocator 1 [Medicago truncatula] (GB:ABE88494.1); similar to Os08g0520000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062264.1); similar to Os09g0497000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063557.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.312590398973349 -3.96893852577624 0.00374132428310268 1 5.21788491610708 9.77069741235903 -0.312590398973349 0.0584093005376634
AT2G42910_at 7.37776103342602 7.94229447224893 7.16395012993687 7.56356154208541 7.76366642291022 7.13734164624223 8.61247571319465 8.7027614184769 7.79710337881754 8.0134344778485 7.41359022120947 7.89474029865714 7.36011155399555 7.68370441317815 7.85448142415592 7.57305082105904 7.42174883825060 7.69966458271093 7.8864508408243 0.167151171304419 0.166855521892052 0.169629163132377 0.177779014225975 0.176606596373335 0.171034388335606 0.171167730252221 0.168231238066126 0.174816932493904 0.167911848865372 0.167330100228065 0.165790575389207 0.166607828801134 0.163832247953044 0.168723271991409 0.171600631266226 0.184986274159057 0.175236996157579 0.166292595358123 2 2|0 +|/ 17864273 17865436 17864880.8 17863345 17865674 + gene protein_coding_gene FALSE TRUE AT2G42910.1 ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) Identical to Ribose-phosphate pyrophosphokinase 4 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 4) (PRS4) [Arabidopsis Thaliana] (GB:Q680A5;GB:Q9S7B9); similar to ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) [Arabidopsis thaliana] (TAIR:AT1G10700.1); similar to Ribose-phosphate pyrophosphokinase 4 (Phosphoribosyl pyrophosphate synthetase 4) (GB:Q9XGA1); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) -0.519026468693809 -3.96768125869758 0.00374813415436583 1 5.216253165493 15.5387929231396 -0.519026468693809 0.162230926790651
AT3G26980_at 5.54757842053608 5.59519072926152 5.96629928742443 6.10015300431122 5.92057778897259 5.86389086968477 5.40586375124132 5.53214105694388 5.69440056796474 5.91998147423271 6.27112312099588 6.64232636336779 5.58464357321125 5.80944311479046 6.07907624709197 5.891652695149 5.6190576897703 5.40361736471897 5.74763633143883 0.145374229971501 0.145345416018542 0.147282572600411 0.142455735106918 0.143350223057296 0.147032487647926 0.149455434271546 0.142129049686865 0.143714059261471 0.147405227220275 0.144449842960718 0.144786713000326 0.142250816849962 0.146304091185642 0.140563335217020 0.140652659866993 0.144918257325324 0.145506099480378 0.142231478723831 3 3 - 9947720 9948655 9948224.19 9947403 9949277 - gene protein_coding_gene FALSE TRUE AT3G26980.1 ubiquitin family protein Identical to Membrane-anchored ubiquitin-fold protein 4 precursor (Membrane- anchored ub-fold protein 4) (AtMUB4) (MUB4) [Arabidopsis Thaliana] (GB:Q9LSD8); similar to ATGP4 (Arabidopsis thaliana geranylgeranylated protein) [Arabidopsis thaliana] (TAIR:AT4G24990.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); similar to Os02g0750600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048133.1); similar to Os04g0393300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052648.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.283907405680371 3.96023432335867 0.00378874214252484 1 5.2065826904863 11.5914403530548 0.283907405680371 0.0343255634488388
AT3G28100_at 5.05098803705484 5.29299729833933 6.37772750395032 6.13161704594413 7.32855619192938 6.47115109361464 5.82372908658769 5.95677536156295 3.41794514290645 4.30025532304056 3.94792007457075 3.23758398981783 4.59352886817493 3.73948920058619 3.51909558687897 4.58621352865275 4.60293484751889 3.35955710724927 4.16581207167677 0.280846172294504 0.28735648183373 0.282129618887917 0.294771074629418 0.289670337226102 0.294735544944325 0.279250777444769 0.288503292379607 0.306490444300133 0.277616145316906 0.297057596020245 0.286848894154573 0.291557520802375 0.279863531587315 0.278301737761340 0.280046674851956 0.288012242380753 0.297176967287230 0.277616145316906 3 3|0 +|/ 10457389 10457927 10457610.571 10457336 10462202 + gene protein_coding_gene FALSE TRUE AT3G28100.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28070.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.516546700431678 3.96002502505152 0.00378989020735907 1 5.20631076477412 10.0090066588591 0.516546700431678 0.161598557556495
AT1G36730_at 8.05486491561243 7.8170802453047 8.40056227331693 8.41636900873637 8.39998726802822 8.11731543815718 8.38573046443258 8.10267210530832 8.1062932861016 7.94236391661668 8.59079511543156 8.44651726142999 8.24961575226234 8.47642616217446 8.48934098331483 8.59770098140053 8.6643784177598 8.49667524140464 8.1057092181505 0.096464185785995 0.0947932886265276 0.0961031834075539 0.0971382351831689 0.0961094917151015 0.0984383793264941 0.0963917599458826 0.0996936931203141 0.100023387688325 0.097700083604226 0.0935349728165177 0.0935349728165177 0.096100199437521 0.0999362697352058 0.0991725203841709 0.095567580759438 0.107556971745808 0.096364101289193 0.0977215117618675 1 1 - 13899936 13900483 13900201.818 13899422 13902043 - gene protein_coding_gene FALSE TRUE AT1G36730.1 eukaryotic translation initiation factor 5, putative / eIF-5, putative Identical to Probable eukaryotic translation initiation factor 5-1 (eIF-5 1) [Arabidopsis Thaliana] (GB:Q9C8F1;GB:Q93ZX3); similar to eukaryotic translation initiation factor 5, putative / eIF-5, putative [Arabidopsis thaliana] (TAIR:AT1G77840.1); similar to putative eukaryotic translation initiation factor 5 [Oryza sativa (japonica cultivar-group)] (GB:BAD54665.1); similar to Os09g0326900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062885.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Translation initiation factor IF5; (InterPro:IPR002735) 0.346723665084756 3.95885999388913 0.00379628754960167 1 5.20479699253844 16.4882660713722 0.346723665084756 0.080580465809245
AT3G02080_at 11.057367875653 11.0244997386508 10.4455890872614 10.4760892875550 10.8061914485989 10.6527991482399 10.7653089749934 10.9072566321351 10.8313320974941 10.5746766226035 10.5587897229996 10.7037350595920 10.3999496454196 10.3791189244461 10.9741036547584 10.1672737786001 10.2104710387292 10.2795724715134 10.6586394163739 0.069081704914543 0.0701833905580828 0.0718738768896777 0.0726076959810905 0.0715941096074472 0.0733456406656501 0.0720524320821903 0.073836921071125 0.074551149926348 0.0698363333908159 0.0696046189318994 0.0687563041939092 0.0768866680209832 0.0718362852583551 0.0720184270798986 0.0712052742549872 0.0775907950364391 0.0689011975006052 0.0708815112884529 3 3 - 364151 365132 364658.545 363888 365282 - gene protein_coding_gene FALSE TRUE AT3G02080.1 40S ribosomal protein S19 (RPS19A) Identical to 40S ribosomal protein S19-1 (RPS19A) [Arabidopsis Thaliana] (GB:Q9SGA6); similar to 40S ribosomal protein S19 (RPS19B) [Arabidopsis thaliana] (TAIR:AT5G15520.1); similar to Ribosomal protein S19e [Medicago truncatula] (GB:ABE88682.1); contains InterPro domain Ribosomal protein S19e; (InterPro:IPR001266) -0.286265160463755 -3.95842084802931 0.00379870194972592 1 5.20422633358274 21.3405591903848 -0.286265160463755 0.0369903733954762
AT3G43300_at 5.45219587343069 5.29394608694419 5.37871224699755 4.82879598042637 5.23410084213265 4.96008804968341 4.73922165981132 3.99156414807973 5.10594211745949 5.22606172253994 6.31709786992649 6.84247657745936 6.08344311303793 5.85525176021259 5.91924651633858 6.1343157513996 5.70827645034682 4.83543052825064 5.03573034642498 0.239662791201244 0.232982420004390 0.238063194514862 0.244328277505700 0.233612440813457 0.243862786554910 0.241745465176129 0.234327845110545 0.238634728005521 0.242093030173464 0.242021983292827 0.236151626768168 0.240883791121271 0.237354369542510 0.255672403427595 0.230843360177242 0.254182419953619 0.241990492117076 0.236966757549916 3 3|0 -|/ 15245251 15246006 15245664.5 15244884 15256022 - gene protein_coding_gene FALSE TRUE AT3G43300.1 ATMIN7 (ARABIDOPSIS THALIANA HOPM INTERACTOR 7); guanyl-nucleotide exchange factor/ protein binding AtMIN7 is an immunity associated Arabidopsis protein targeted by HopM1, a conserved Pseudomonas syringae virulence protein. AtMIN7 encodes one of the eight members of the Arabidopsis adenosine diphosphate (ADP) ribosylation factor (ARF) guanine nucleotide exchange factor (GEF) protein family. The AFR GEF proteins are key components of the vesicle trafficking system in eukaryotic cells. HopM1 mediates the destruction of AtMIN7 via the host proteasome. similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAC79659.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) 0.535278298236769 3.95778583507327 0.00380219611643049 1 5.20340109323193 10.5270883024447 0.535278298236769 0.169692929586451
AT1G03430_at 8.41741965478489 8.58250647357443 9.04596692643961 8.80748637300484 9.0527412845193 8.39538004755995 8.41732005717545 8.43124176844972 7.4911502459622 7.26813027108663 8.03863963607245 7.7972578162688 7.85502844186494 7.97863305722391 7.22050921810127 7.97137040324025 7.94684919010775 7.904472916291 7.25369022324244 0.200007822327755 0.203472944506143 0.211278780997224 0.210139286390080 0.209989582124408 0.213143016405107 0.203222464622841 0.207534819499748 0.216794111853805 0.212315400515471 0.200007822327755 0.204943689647421 0.205453310792401 0.213625479958591 0.215821233442907 0.20382899131597 0.212484820008109 0.205867290529679 0.209423324864223 1 1|0 +|/ 848165 848829 848451 847872 849499 + gene protein_coding_gene FALSE TRUE AT1G03430.1 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5); histidine phosphotransfer kinase Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (APH2), AT5G39340 (APH3), AT3G16360 (APH4), AT1G03430 (APH5) and AT1G80100 (APH6). Identical to Histidine-containing phosphotransfer protein 5 (AHP5) [Arabidopsis Thaliana] (GB:Q8L9T7;GB:Q9LR80;GB:Q9MAY1); similar to AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2), histidine phosphotransfer kinase/ signal transducer [Arabidopsis thaliana] (TAIR:AT3G29350.1); similar to putative histidine-containing phosphotransfer protein 4 [Populus x canadensis] (GB:CAH56502.1); contains InterPro domain Hpt; (InterPro:IPR008207) 0.432354920425335 3.956101564429 0.0038114804687192 1 5.20121194810856 16.2321338223519 0.432354920425335 0.124364099010042
AT3G52200_at 7.41457242269353 7.48174986508847 7.31597273943863 7.78927855077411 7.58204803393539 7.46834787025504 7.43344277114127 7.37097057150143 6.32632540630198 6.46887728591214 7.244478868845 7.09516931464689 7.05955611400245 6.88326588188231 6.80186765786306 7.14836344196912 7.03927290324892 6.9456275533365 6.49453924194061 0.16788419308482 0.162176681060528 0.161352371233742 0.166399133547275 0.168010617038703 0.159229518704055 0.169953456948462 0.169663461984238 0.181812695540599 0.161349654307673 0.160962532058852 0.156314653581361 0.156222818689753 0.161622098320662 0.173285045675183 0.159689756278272 0.188396195241781 0.173821199889372 0.159988007937123 3 3|0 +|/ 19375343 19376846 19376147.625 19371184 19377365 + gene protein_coding_gene FALSE TRUE AT3G52200.1 LTA3 (Dihydrolipoamide S-acetyltransferase 3); dihydrolipoyllysine-residue acetyltransferase dihydrolipoamide S-acetyltransferase (LTA3) mRNA, nuclear Identical to Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 1) (PDCE2) (E2) (Dihydrolipoamide S- acetyltransferase component 1 of pyruvate dehydrogenase complex) (PDC- E2) (LTA3) [Arabidopsis Thaliana] (GB:Q0WQF7;GB:Q39082;GB:Q9SQI7;GB:Q9SUY5); similar to dihydrolipoamide S-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G13930.1); similar to Os06g0499900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057705.1); similar to dihydrolipoamide S-acetyltransferase [Chlamydomonas reinhardtii] (GB:AAT02515.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide acetyltransferase, long form; (InterPro:IPR006257); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.355507064958660 3.9555355969861 0.00381460573150505 1 5.20047622063489 14.2106049506164 0.355507064958660 0.0857208949290157
AT3G57300_at 8.33428293862043 8.4262053779711 8.28358070361126 8.25729664170356 8.69374358691082 8.33285944714071 8.25525396683629 8.41732379379415 8.6038194068835 8.81979872289543 7.99607319895325 8.08224948835197 8.28981602216747 7.80865374172507 7.8856294501622 8.43623302024186 8.14621246864993 8.01882008548802 8.90311844679205 0.144594637836122 0.143959899440199 0.147871936160563 0.142912863027804 0.142949527265423 0.147017442206007 0.146189799498204 0.150366489103802 0.163782317608067 0.144728552167818 0.148396988399541 0.151305894935009 0.142312798489566 0.155058477628301 0.157393615150828 0.146512305816082 0.161842745276847 0.150971799753094 0.147822617499718 3 3 + 21217504 21218584 21218068.9 21210591 21218864 + gene protein_coding_gene FALSE TRUE AT3G57300.1 transcriptional activator, putative similar to PIE1 (PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1), ATP binding / DNA binding / helicase [Arabidopsis thaliana] (TAIR:AT3G12810.1); similar to SNF2-related domain-containing protein [Dictyostelium discoideum AX4] (GB:XP_629681.1); similar to INO80 complex homolog 1 [Homo sapiens] (GB:NP_060023.1); similar to transcriptional activator, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95950.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.329507174426712 -3.95514524877723 0.00381676282196781 1 5.19996875759416 16.8043382037358 -0.329507174426712 0.0704323080387326
AT1G29500_at 6.15710853842352 6.41431447094911 6.49024721830238 6.93474547327546 7.99640971829943 7.67076195223964 8.01964665684845 8.21282599650822 8.2345106146547 8.09634397804177 9.72042644232317 9.53165367064175 9.67114233334853 9.24384808403828 9.41316827738643 9.34472139454856 8.63519005199766 8.93293532328665 9.40268047743123 0.203100403000463 0.193930338473277 0.205089045242205 0.192019890551046 0.181349656900925 0.204835881741853 0.188661680231049 0.182690665861739 0.199579596703929 0.194844556210326 0.181349656900925 0.183671265540536 0.182748969543578 0.191094673543174 0.188730512464238 0.186195072157780 0.183937015872066 0.182444545648407 0.181349656900925 1 1 + 10321317 10321625 10321421.455 10321196 10321850 + gene protein_coding_gene FALSE TRUE AT1G29500.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G29450.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.402928924333691 3.9540130852401 0.00382302660335298 1 5.19849677087938 16.1817478633919 0.402928924333691 0.110416241645408
AT4G16800_at 5.42372857895212 5.90786095805602 5.71161015357446 6.18290078070009 6.06623843958996 6.1408742085099 5.67557705224042 5.55063898096487 4.87597465112127 5.32238000684615 5.76105270562429 5.61667440099622 4.76785849329908 5.31199765489996 5.79194647611919 5.60098458926952 5.90576682352927 6.05186315171726 5.23075362790878 0.234797721397977 0.243748541836131 0.241429849839482 0.239327045454423 0.247032223864069 0.239883046576748 0.236019989968941 0.245270699548777 0.253301653607895 0.233837960674095 0.24153276882591 0.241514914537265 0.241716218377419 0.251589264095826 0.241886039130910 0.235202372621806 0.245439315887935 0.233837960674095 0.238322718831642 4 4|0 -|/ 9454956 9456081 9455615 9454835 9456328 - gene protein_coding_gene FALSE TRUE AT4G16800.1 enoyl-CoA hydratase, putative similar to ATDCI1 (DELTA(3,5),DELTA(2,4)-DIENOYL-COA ISOMERASE 1), delta3,5-delta2,4-dienoyl-CoA isomerase/ enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT5G43280.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96201.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.421968222340011 3.95365238239698 0.0038250245239551 1 5.19802775672013 11.2044557101854 0.421968222340011 0.119605568200909
AT3G01090_at 8.01018348573597 7.69227965477252 7.96204500795062 7.34172173732975 8.20521462899523 7.95168445961739 7.7750713734343 7.45365856132238 6.82042866438981 7.15143626787201 7.66537127112821 7.77533234205639 8.08647252413541 8.0370081813399 7.5896644855353 7.95593520652229 8.35940559156259 7.50108217197294 7.24449053775445 0.18009987154837 0.165369231177755 0.172856721214803 0.168798723328874 0.170904976320503 0.171294645022335 0.167782362524527 0.169659854379897 0.212274168801754 0.176816824369597 0.171593678642698 0.163815394378958 0.173479979484772 0.174468406097877 0.182868984951595 0.169040854606913 0.166347857569707 0.178724345473037 0.172280192007767 3 0|3 /|- 31482 32340 31975.111 31188 34604 - gene protein_coding_gene FALSE TRUE AT3G01090.1|AT3G01090.2 AKIN10 (Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE 1.1); protein kinase encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1 Identical to SNF1-related protein kinase catalytic subunit alpha KIN10 (EC 2.7.11.1) (AKIN10) (AKIN alpha2) (KIN10) [Arabidopsis Thaliana] (GB:Q38997;GB:O04728;GB:Q38987;GB:Q39076;GB:Q8RWD2); similar to AKIN11 (Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE 1.2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G29160.2); similar to SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3), kinase [Arabidopsis thaliana] (TAIR:AT5G39440.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); similar to SNF1 [Lycopersicon esculentum] (GB:AAF66639.1); similar to SNF1-related protein kinase [Cucumis sativus] (GB:CAA71142.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Kinase-associated, C-terminal; (InterPro:IPR001772); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.465766835716578 3.95088685307667 0.00384037978154519 1 5.19443107625836 15.2706835945383 0.465766835716578 0.139890645595784
AT1G10360_at 9.01169856032021 9.0328156925884 8.80797219181895 8.60918086972722 8.94817734621884 9.0737993713611 9.73143402069203 9.75434233679503 10.1731336268483 10.0408925709734 10.2490981744976 10.1730383555855 10.1020160095593 9.9900430744831 10.1920005261819 10.1324876965560 9.80864894622262 10.0999446491638 10.2364023801230 0.115341538118556 0.108350895606425 0.119978022157445 0.119934840694122 0.114446616343007 0.114671440258855 0.115006638107077 0.106921302271777 0.114481305359235 0.104523199255399 0.10763956580107 0.107198483166742 0.106251382667966 0.120568150032190 0.109472259829182 0.109056554194515 0.108039998466316 0.114280146105160 0.105803654773844 1 1 - 3395741 3396660 3396188.182 3395560 3396851 - gene protein_coding_gene FALSE TRUE AT1G10360.1 ATGSTU18 (GLUTATHIONE S-TRANSFERASE 29); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU17/ERD9/GST30/GST30B (EARLY-RESPONSIVE TO DEHYDRATION 9, GLUTATHIONE S-TRANSFERASE 30, GLUTATHIONE S-TRANSFERASE 30B), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G10370.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.289761694050526 -3.95018604941883 0.00384428134854300 1 5.19351945051083 19.2429538178633 -0.289761694050526 0.0410506699841232
AT2G38400_at 6.80581657866937 6.85251375127093 6.4470317029202 5.9671360976898 7.91328355491722 7.7681910966497 6.54247444583034 6.11432776968445 5.26217773496208 5.79072933044055 5.34960332769333 6.03093312130972 6.94328199701436 6.21092031093658 6.13656423105599 6.50228978238123 6.39577922536931 5.56287049992243 6.24406354265901 0.198919069476344 0.196987823900117 0.198637700840385 0.197917755671587 0.212501357011798 0.204318932763054 0.19578270553714 0.204245533655400 0.201745936400409 0.198878273386310 0.199944625773279 0.200039416875399 0.205677679258892 0.213233238744412 0.200081996972815 0.206023618283166 0.211402739742819 0.209432109793373 0.205109209836827 2 2 + 16092171 16092882 16092449.182 16090767 16093427 + gene protein_coding_gene FALSE TRUE AT2G38400.1 AGT3 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 3); alanine-glyoxylate transaminase alanine:glyoxylate aminotransferase 2 homolog (AGT3) mRNA, Identical to Alanine--glyoxylate aminotransferase 2 homolog 2, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 2) (AGT3) [Arabidopsis Thaliana] (GB:Q94AL9;GB:O80911); similar to alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative [Arabidopsis thaliana] (TAIR:AT3G08860.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III [Medicago truncatula] (GB:ABE94503.1); similar to Os05g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055831.1); similar to Os03g0338000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050053.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) 0.410500459643475 3.94847259716778 0.00385383844048068 1 5.19129019683717 12.7549404653611 0.410500459643475 0.114378766778559
AT1G70530_at 9.67047546001576 9.77846086164951 10.0965761309987 9.91906287970716 10.1988258884783 10.0576536006606 9.0450568470521 8.85295477946432 8.31580551886914 8.79031736282868 8.54668058769184 8.52810688596628 8.59044837522881 8.63217530850147 8.1258262041369 8.58705866094973 8.8052126136389 8.12652802106201 8.73053802765828 0.150691870180486 0.143253654248065 0.14628494123036 0.148013870906682 0.147755625695673 0.153550359165759 0.143468716861664 0.142632249144849 0.157555233892147 0.142163828279236 0.146892095594616 0.146138026627446 0.145337371587942 0.14538453312189 0.159434442202059 0.146753836879914 0.151831939896241 0.168846775255881 0.146160178377435 1 1|0 -|/ 26592481 26593078 26592678.5 26592413 26595042 - gene protein_coding_gene FALSE TRUE AT1G70530.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G40380.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93633.2); similar to Os05g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054549.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.305913458472031 3.94782699154803 0.00385744599923983 1 5.19045011715079 18.2548707486362 0.305913458472031 0.0547259540171776
AT1G14320_at 12.0815738398291 12.1785589034893 11.8898120814355 11.8863038445361 11.7274647694435 11.4370784485446 12.1610456190135 12.2377565576125 11.8483646540602 11.9527488685602 11.7811006980461 11.9909155118704 11.7070788629714 11.6125772203967 12.0729730730501 11.4845969310649 11.4549615391340 11.441782707552 11.8242708548513 0.0644784375245904 0.0644992982410133 0.0621204411921519 0.0638123190723777 0.0621204411921519 0.0663825036949836 0.0621204411921519 0.0661115120394332 0.0668622997321687 0.0625069048670876 0.0622222407373895 0.0621862482922838 0.0621204411921519 0.0653363489076195 0.0630553564237027 0.0626216789025215 0.0683354383276251 0.0660309114252039 0.0644818893495834 1 1|0 +|/ 4888894 4889345 4889073.778 4888209 4889656 + gene protein_coding_gene FALSE TRUE AT1G14320.1|AT1G14320.2 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related Identical to 60S ribosomal protein L10-1 (RPL10A) [Arabidopsis Thaliana] (GB:Q93VT9); similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); similar to 60S ribosomal protein L10 (QM protein homolog) (GB:Q9SPB3); similar to Ribosomal protein L10E [Medicago truncatula] (GB:ABE79479.1); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197)|similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); similar to 60S ribosomal protein L10 (Wilms tumor suppressor homolog) (GB:O22431); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197) -0.305724375904658 -3.94715653103925 0.00386119625983418 1 5.18957762200312 23.7341374799053 -0.305724375904658 0.0546225859568769
AT4G38500_at 6.13361430776294 6.58611181807465 6.31750392317807 6.385562555761 6.88188537654048 6.31621910342822 6.09525065000907 6.14385037711603 4.98636752190242 5.61925089616195 6.19537676555114 6.17965264652228 5.71625771619055 6.01988850155148 5.90687715540752 6.01707263010327 5.36467153921503 5.82327646881462 5.19961856272615 0.220908193054410 0.21660672890426 0.21660672890426 0.234839593952261 0.225817404564434 0.239560216565598 0.218579863420263 0.224280123052952 0.242820823691202 0.227574020531778 0.222769425371047 0.220314450215978 0.21660672890426 0.233480165146893 0.225167419876397 0.229568187269144 0.235934091341911 0.23026239793525 0.229175286565981 4 4 + 18009839 18010623 18010260.545 18007750 18010897 + gene protein_coding_gene FALSE TRUE AT4G38500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28240.1); similar to Os06g0724300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058611.1); similar to Protein of unknown function DUF616 [Medicago truncatula] (GB:ABE79297.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) 0.435028901237795 3.94473933284585 0.00387474934394574 1 5.18643140992678 11.9431480164086 0.435028901237795 0.126190701458354
AT3G08510_at 10.7529655276812 10.8433830814735 10.6838916910458 10.7412687548266 11.3878675611653 11.0762808202534 10.5427089459417 10.3227176829996 10.0454051154245 10.3435544669840 10.7432748886317 10.6536739246124 10.7429728329352 10.5712187976969 10.2289223919734 10.3952229989111 10.4841216999623 10.5374429535750 10.3613922518099 0.086439189557574 0.0853536102561522 0.0871470372007242 0.0877663365168685 0.0874307223347684 0.0853536102561522 0.0858323597040149 0.0853536102561522 0.0954643519241095 0.0878855815709036 0.0868490266920019 0.0853536102561522 0.0853536102561522 0.0945363449389876 0.0917269372591019 0.0872621924492509 0.0928241293539324 0.0870997693658443 0.0865091707034695 3 3 - 2582650 2583520 2582984.636 2582373 2585857 - gene protein_coding_gene FALSE TRUE AT3G08510.1|AT3G08510.2 ATPLC2 (PHOSPHOLIPASE C 2); phospholipase C Phosphoinositide-specific phospholipase C (PI-PLC), catalyzes hydrolysis of phosphatidylinositol 4,5-bisphosphate into inositol 1,4,5-trisphosphate and diacylglycerol. similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT5G58700.1); similar to phosphoinositide-specific phospholipase C family protein [Arabidopsis thaliana] (TAIR:AT2G40116.1); similar to phosphoinositide-specific phospholipase C, putative [Arabidopsis thaliana] (TAIR:AT3G55940.1); similar to phosphatidylinositol-specific phospholipase C [Glycine max] (GB:AAA74441.1); similar to phosphoinositide-specific phospholipase C P13 (GB:AAB03258.1); similar to phosphoinositide-specific phospholipase C [Brassica napus] (GB:AAD26119.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909); contains InterPro domain Phosphatidylinositol-specific phospholipase C, Y domain; (InterPro:IPR001711); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoinositide-specific phospholipase C (PLC); (InterPro:IPR001192); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.325686215131631 3.94467861645879 0.00387509043013819 1 5.18635236926442 21.1912473027284 0.325686215131631 0.0685589013639974
AT4G37880_at 9.1005451288525 9.20546895526559 9.26787171466232 9.26743330799226 9.58067752310173 9.50236557034356 9.1242362722034 9.05564648586752 8.55949247212897 8.49135421013423 8.85326768065355 8.78172838032958 8.98125667457996 9.00969925564182 8.73609905917579 9.04474899550575 8.8788707273643 8.70615140872403 8.76580469504231 0.139265560847814 0.139179994520353 0.141690959597808 0.138853864584961 0.137038784402414 0.139655049145683 0.137753459726389 0.138584459881015 0.154065621513682 0.163367877280761 0.147613489069944 0.137038784402414 0.141718453805395 0.141229300198582 0.152752976209114 0.137038784402414 0.144782655375553 0.145139187869055 0.152691723600140 4 4 + 17810822 17811266 17811018.364 17809675 17811578 + gene protein_coding_gene FALSE TRUE AT4G37880.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G22690.2); similar to Zinc finger, RING-type; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE86823.1); similar to Os06g0588900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057959.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.275770066061356 3.94365834331599 0.00388082681089979 1 5.18502408460402 18.0027947357105 0.275770066061356 0.0255784641606349
AT4G27090_at 11.192601473941 11.431463391883 10.7807130702344 10.9344718424410 11.1422064507145 10.8720431380899 11.1351630873592 11.4054902430378 10.8850288323955 11.3669398531901 11.0804189353120 11.2294430582378 10.9978884886021 10.9132500367424 11.1571008053615 10.7934996887387 10.4057918577255 10.3477166917241 11.3589719814609 0.107275951695217 0.107152816413789 0.110460486068849 0.109977005595770 0.110494512048255 0.115559747222425 0.109493130865921 0.1081587436551 0.119508033082890 0.107971644756787 0.111766681680325 0.107477374076349 0.107417341336247 0.111146398900884 0.111739297021555 0.107152816413789 0.130305194152440 0.121911710647899 0.107170067231065 4 4 - 13594142 13594921 13594538.727 13593911 13595258 - gene protein_coding_gene FALSE TRUE AT4G27090.1 60S ribosomal protein L14 (RPL14B) Identical to 60S ribosomal protein L14-2 (RPL14B) [Arabidopsis Thaliana] (GB:Q9T043); similar to 60S ribosomal protein L14 (RPL14A) [Arabidopsis thaliana] (TAIR:AT2G20450.1); similar to glycoprotein-like protein [Solanum tuberosum] (GB:ABA40467.1); contains InterPro domain Ribosomal protein L14; (InterPro:IPR002784) -0.348414558697638 -3.94188850424187 0.00389079905809478 1 5.18271953521076 22.1464118793731 -0.348414558697638 0.0824077809755092
AT1G32790_at 10.2936440833992 10.5265906520633 10.5406171846155 10.7839648993131 10.8166532834025 10.5457852242373 10.0897201332001 10.1787462056112 9.81802367903628 9.94378958278952 10.4197150967809 10.1039056342101 10.0823576371396 10.3482703528573 9.930366363705 10.4993129881618 9.79310463920088 10.1341536473430 9.90023350124742 0.0827147845880832 0.0815979947184966 0.08462718680253 0.0815979947184966 0.0820049828388198 0.0881368197926557 0.083538921942302 0.0853232746687858 0.0944041945315724 0.0867938355796101 0.0831397003426479 0.0815979947184966 0.0831476783797451 0.0841712896444907 0.0871251166343572 0.0829152059462134 0.0900283644886983 0.0817252449003414 0.082498532760667 1 1|0 -|/ 11875157 11876340 11875605 11874684 11877367 - gene protein_coding_gene FALSE TRUE AT1G32790.1|AT1G32790.2 CID11; RNA binding / protein binding|CID11; RNA binding RNA-binding protein, putative, similar to RNA-binding protein GB:CAB40027 GI:4539439 from (Arabidopsis thaliana).Member of a family of PAB2 binding domain proteins. similar to RBP37 (RNA-BINDING PROTEIN 37), RNA binding [Arabidopsis thaliana] (TAIR:AT4G10610.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RBP37 (RNA-BINDING PROTEIN 37), RNA binding [Arabidopsis thaliana] (TAIR:AT4G10610.2); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.33806462661204 3.94159771696066 0.00389244012800413 1 5.18234084429217 20.4975888162049 0.33806462661204 0.0763752327665747
AT1G10170_at 7.05249921628065 7.02283794992024 7.44675049233925 7.35119064354354 7.41281828493452 7.59418029442755 6.68840424549522 6.76284932441336 6.52960360752891 6.70336728642501 6.59198275539171 6.66792779777067 6.99227045961196 6.67008257467134 6.04473133786027 6.97012024296165 7.16643555376593 6.44803183554607 6.84186694142272 0.165440331658847 0.158458014464102 0.160870915540398 0.162860601780903 0.157900596756380 0.158383338318972 0.157745734447686 0.162087996304285 0.182418093722217 0.163877550149865 0.162380437514424 0.157745734447686 0.160307055096881 0.157745734447686 0.163586221950207 0.160176258631464 0.157745734447686 0.172686496488166 0.160133088994012 1 1 - 3334027 3334484 3334228.636 3333597 3337493 - gene protein_coding_gene FALSE TRUE AT1G10170.1 NF-X1 type zinc finger family protein similar to transcription factor [Arabidopsis thaliana] (TAIR:AT5G05660.1); similar to putative TF-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46154.1); similar to TF-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72621.1); similar to Zinc finger, NF-X1-type; Single-stranded nucleic acid binding R3H; Zinc finger, RING-type; Zinc finger, PHD-type [Medicago truncatula] (GB:ABE80186.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, NF-X1-type; (InterPro:IPR000967); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.285961226344542 3.93943756424233 0.00390465419080235 1 5.17952724666707 13.8592215221641 0.285961226344542 0.0380900051958247
AT3G03180_at 5.07207391315154 4.8603967504939 4.75197331568654 4.95942956421490 5.7484933759993 5.76213042901681 4.68637376721693 4.99304376474356 3.82185419123085 4.61190608962097 4.52361697373479 4.37107642515156 4.9022434491342 4.52952776936860 4.56231354700287 4.87419853270633 4.77635963617426 4.6417221701064 4.71586656733507 0.212214511124485 0.225167473630976 0.218173454168605 0.210755837095691 0.223114304627479 0.229910393745201 0.216337353646976 0.222930615842832 0.227455629669362 0.235932117219816 0.216317597423309 0.213376778323189 0.215764769617451 0.224582827383406 0.212971581090453 0.215269710521034 0.218173540748335 0.216188196026199 0.213716877131241 3 3|0 +|/ 733540 734081 733844.444 733394 734490 + gene protein_coding_gene FALSE TRUE AT3G03180.1 Got1-like family protein similar to Got1-like family protein [Arabidopsis thaliana] (TAIR:AT3G49420.1); similar to Got1-like family protein [Arabidopsis thaliana] (TAIR:AT5G01430.1); similar to Got1-like family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47215.1); similar to Os03g0209400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049334.1); contains InterPro domain Got1-like protein; (InterPro:IPR007305) 0.333478992927329 3.9369013981992 0.00391904655678915 1 5.17622290063406 9.61965999122444 0.333478992927329 0.0738434151968308
AT2G26330_at 7.57046770284326 8.06221161917365 6.22041226440988 6.52252084026643 7.74715883522971 7.80163507466192 8.1264498720333 8.23914252869297 8.0171795641918 8.17943737608086 8.55381359933964 9.09578642886672 8.35439745480033 8.24155945009048 8.60323098244202 8.0383673935442 7.819151705784 8.46068590213176 8.51907387924972 0.177357552456450 0.166282648914617 0.183541954056229 0.178753617183829 0.167568674787341 0.17459737672762 0.171384155445460 0.171399403663664 0.183803196870666 0.167403216563542 0.171417902679007 0.163131581899051 0.171396185252922 0.172762454883133 0.171905978682334 0.165043806287628 0.174562199315319 0.167489093891693 0.165115148790569 2 2|0 -|/ 11215476 11215972 11215652.8 11215261 11221049 - gene protein_coding_gene FALSE TRUE AT2G26330.1 ER (ERECTA, QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1) Homologous to receptor protein kinases. Involved in specification of organs originating from the shoot apical meristem. Contains a cytoplasmic protein kinase catalytic domain, a transmembrane region, and an extracellular leucine-rich repeat. ER has been identified as a quantitative trait locus for transpiration efficiency by influencing epidermal and mesophyll development, stomatal density and porosity of leaves. It has been implicated in resistance to the bacterium Ralstonia solanacearum and to the necrotrophic fungus Plectosphaerella cucumerina. Together with ERL1 and ERL2, ER governs the initial decision of protodermal cells to either divide proliferatively to produce pavement cells or divide asymmetrically to generate stomatal complexes. similar to ERL1 (ERECTA-LIKE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G62230.1); similar to ERL2 (ERECTA-LIKE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G07180.1); similar to receptor-like protein kinase [Elaeis guineensis] (GB:AAO26312.1); similar to putative receptor protein kinase [Sorghum bicolor] (GB:AAL68842.1); similar to putative transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD44800.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.384662834463188 -3.93576054629108 0.00392553917447617 1 5.17473614684757 15.8534687027301 -0.384662834463188 0.102197382465430
AT4G37280_at 5.79138008540048 5.87213349248455 4.83567439819459 5.3652548267729 5.9823445216535 5.71554380422127 6.21600827522339 5.69499510408005 5.70632906136837 6.43480064492766 6.15554543622356 6.00275132554232 5.46257886044054 5.62016415778789 5.88233884418051 5.76753322003604 5.70377645298177 5.2896504240282 6.55750522639473 0.179909314363695 0.187932745509641 0.195768558736899 0.196449444507752 0.180884159116862 0.18562822248007 0.179909314363695 0.181953636344779 0.193231006360869 0.193517873574282 0.183405771437827 0.196598988052876 0.194118046154715 0.187961045164546 0.183353007028039 0.18166036593196 0.183718318127830 0.201775159719668 0.188472857556748 4 0|4 /|- 17546797 17547662 17547201.889 17546578 17549418 - gene protein_coding_gene FALSE TRUE AT4G37280.1 MRG family protein similar to chromatin binding [Arabidopsis thaliana] (TAIR:AT1G02740.1); similar to MRG family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94215.2); contains InterPro domain MRG; (InterPro:IPR008676); contains InterPro domain Chromo; (InterPro:IPR000953) -0.458130411165432 -3.93452458888454 0.0039325859962837 1 5.17312520768813 11.6683771390286 -0.458130411165432 0.137315783223766
AT1G54770_at 5.17029354363801 5.05895994494576 5.03490095633957 5.47444049847145 5.80652137277761 5.56838556276084 5.15826394258138 4.72117268526331 4.43229009473873 4.57094475218807 4.84587674850675 4.9844341909025 4.95511258072351 4.82156266766854 4.59251867873797 4.62879266735947 5.15795969808081 4.42446155120143 4.2517547578224 0.259199982021844 0.250485698072452 0.263449468069726 0.260839202072831 0.252103443605421 0.264342236639594 0.253872698328422 0.259040915835026 0.26473087583033 0.264916812826382 0.245185479910974 0.249766933610126 0.258453836863748 0.254590431451735 0.245684247190158 0.252207699033139 0.250922874737091 0.257506709771738 0.256822280045002 1 1|0 +|/ 20438478 20439151 20438760.778 20438306 20439675 + gene protein_coding_gene FALSE TRUE AT1G54770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G30495.1); similar to Os02g0730500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048014.1); similar to hypothetical protein SNOG_09025 [Phaeosphaeria nodorum SN15] (GB:EAT83217.1) 0.413449774064069 3.93422857719031 0.00393427571245658 1 5.17273935019916 9.85895217142092 0.413449774064069 0.116519596897820
AT3G47640_at 3.83494151897955 3.32810726779852 3.39219105370915 3.2791947477605 5.09034500371528 5.12946780926167 4.34061336750819 4.78655301612857 3.62253282037909 5.9307933408919 5.20792989921998 6.28285214579508 6.41046410732586 5.42072103883355 6.01305424349986 5.91284669550795 6.03358908085055 3.91317379923486 5.33955583265204 0.231295188045886 0.229024077915144 0.229307985791044 0.229789128890403 0.226432141520001 0.236642115767655 0.224026591717600 0.237216183918402 0.234465908283986 0.229367590943879 0.231221496239313 0.224026591717600 0.230997927917365 0.230120601553203 0.224026591717600 0.226774375584555 0.232328700926616 0.252918909107978 0.226048560846748 3 0|3 /|+ 17579417 17580043 17579818.6 17578582 17580300 + gene protein_coding_gene FALSE TRUE AT3G47640.1 basic helix-loop-helix (bHLH) family protein similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G19860.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91241.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.41764036965853 3.93194639665575 0.00394732906859226 1 5.16976399077354 9.45448816023658 0.41764036965853 0.118645586834522
AT3G30390_at 11.2206403942136 11.3785226995303 11.6659142936976 11.7642326644727 11.8884515023345 11.6774043357741 11.3346626466388 11.2675055349049 11.0470474225393 11.4026338588729 11.3074816516039 11.1059148146475 11.4305670485516 11.3285511659504 11.0580584780758 11.3201702425555 11.4632275686012 11.4408081618590 11.0254109538230 0.110713995623494 0.107876162251806 0.111537350826991 0.108837399585314 0.108949187746847 0.111173305484741 0.108863901901796 0.111676413919123 0.118108666077976 0.110454043178952 0.109201826977249 0.107118189083579 0.107118189083579 0.107533405098051 0.111522521872625 0.110892339487335 0.117221349664448 0.110650694611698 0.110456210066187 3 3 - 11979654 11980225 11980030.545 11979316 11982100 - gene protein_coding_gene FALSE TRUE AT3G30390.1|AT3G30390.2 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to Os06g0633800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058132.1); similar to putative N system amino acids transporter NAT-1 [Oryza sativa (japonica cultivar-group)] (GB:BAD73448.1); similar to Os02g0727100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047994.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.298575596658350 3.93025189601598 0.00395705097359439 1 5.16755425064888 22.757272493892 0.298575596658350 0.0500497031120546
AT1G29990_at 8.59473029095368 8.49726031093604 9.03385289101729 8.93003953762781 9.30090796732271 8.56034424838396 8.72875951694434 8.42580177076165 7.80582076577787 8.14457795977505 8.73109836805093 8.62666866604813 8.42735174799275 8.33804516359349 8.66560364372831 8.51902543270525 8.50631690294982 8.1435934683241 7.92776768731959 0.174513812905835 0.151497404052307 0.155765787038819 0.154538364211514 0.150204011319152 0.165081571343601 0.163597619780606 0.147429279835792 0.168258839992827 0.171412856408981 0.156502465802131 0.154413350476532 0.150031867871313 0.157163745028480 0.166950102492475 0.152649542362687 0.160779379784772 0.168703137901374 0.152224322329868 1 1 + 10507650 10508110 10507886.556 10507577 10509082 + gene protein_coding_gene FALSE TRUE AT1G29990.1 prefoldin, putative similar to prefoldin-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19943.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) 0.464986154286139 3.93007748903066 0.00395805305281313 1 5.16732678541961 16.9860129309759 0.464986154286139 0.140643051729903
AT2G01290_at 7.64241953305751 7.93541558382588 7.82702128644009 7.91266919869142 7.67616364937959 7.80963070223867 8.25909410732525 8.67610452897267 7.58593275027743 8.07480591972634 7.05879224102297 7.30702600297286 7.69892854845494 7.46788183664154 7.09029439767774 7.92741217876494 7.81758385940303 7.32374188290734 7.94960491418527 0.158759899475306 0.150363707210411 0.151890358792572 0.149995939957129 0.152940994052218 0.153995203016340 0.158573360942815 0.155626304541895 0.160012837502632 0.156590811978875 0.155562539922867 0.150124832685162 0.151419040119711 0.162933280428616 0.162436730470629 0.149631435443738 0.152025079716614 0.154864079996794 0.161986469719999 2 2 - 149224 149699 149435.091 148918 150381 - gene protein_coding_gene FALSE TRUE AT2G01290.1 ribose-5-phosphate isomerase Identical to Probable ribose-5-phosphate isomerase (EC 5.3.1.6) (Phosphoriboisomerase) [Arabidopsis Thaliana] (GB:Q9ZU38); similar to RSW10 (RADIAL SWELLING 10), ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT1G71100.1); similar to chloroplast ribose-5-phosphate isomerase [Spinacia oleracea] (GB:AAL77589.1); contains InterPro domain Ribose 5-phosphate isomerase; (InterPro:IPR004788) -0.365272069345113 -3.92936663291267 0.00396214017586261 1 5.16639961979601 15.6331008970132 -0.365272069345113 0.0923686294164314
AT4G11260_at 9.73719490685352 9.96493541865752 9.9263156506905 10.0160330377486 9.99677633798638 9.6334453819564 9.42652286654814 9.31013614482255 9.25027976559113 8.68746120276123 9.30544263476497 9.21557628441811 9.38625183114496 9.30051636809484 9.30697278797028 9.11847717608044 9.14841826641508 9.17539671985951 8.60392802521849 0.131912510033852 0.128211145483471 0.130501927321963 0.128569569037673 0.128593969260544 0.131568876252804 0.133561877317552 0.134666022733837 0.134693913133831 0.132745073589441 0.132548531513122 0.127049513146906 0.127624879734094 0.133184553529902 0.136150443726745 0.131170204317766 0.145310608729863 0.127727548637861 0.136747655541001 4 0|4 /|- 6851582 6852564 6852137.375 6851273 6853856 - gene protein_coding_gene FALSE TRUE AT4G11260.1 SGT1B (enhanced downy mildew 1b); binding Functions in plant disease resistance signaling, SCF(TIR1) mediated degradation of Aux/IAA proteins and HSP90 mediated degradation of R resistance proteins. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. similar to SGT1A (Suppressor of G2 (Two) 1A), binding [Arabidopsis thaliana] (TAIR:AT4G23570.2); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06580.1); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06581.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain SGS; (InterPro:IPR007699); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.340426889305814 3.92862639838446 0.00396640099913643 1 5.16543404691785 18.7973472213832 0.340426889305814 0.078443639084144
AT4G14990_at 8.4504395725501 8.94241789311378 9.06384643013176 9.18751644949832 9.5998023514498 9.38106269043695 8.65795880242906 9.04477737532038 8.38057147072229 8.14860625196181 8.4987814200892 8.3054831742363 8.81811137690221 8.70500336053297 7.93371889543036 8.84681933638554 8.77271988140189 8.598328183239 8.27402452438901 0.168853192718344 0.160031270144253 0.17001220144906 0.166994912060468 0.165694536409592 0.175134490402241 0.167644055115967 0.163444080209105 0.182805442080496 0.164559498174944 0.16340513688964 0.164639868247168 0.160524981706101 0.162885368053132 0.174424829073040 0.162068293737128 0.171068260072010 0.165366739595198 0.166343250488727 4 4 - 8566293 8566808 8566559.818 8565618 8569810 - gene protein_coding_gene FALSE TRUE AT4G14990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52714.1); contains domain SUBFAMILY NOT NAMED (PTHR21551:SF13); contains domain FAMILY NOT NAMED (PTHR21551) 0.41314759534768 3.92763962788573 0.00397208849886716 1 5.16414674744666 17.4547800885587 0.41314759534768 0.116707709776029
AT3G19030_at 8.2379234234773 8.28779090425737 7.86914997992636 8.21346245834487 8.36018772219379 7.94741540219355 8.66178983561825 8.97055040545242 7.65994216284002 8.11054466865625 7.03225637432258 8.1504801579473 7.57877437209667 7.65333251450105 7.13618471928687 7.86577143857559 7.98947762500344 7.35323597191571 8.05550087692235 0.171892772771427 0.173315541744878 0.179689984798834 0.180900227703589 0.177251185476829 0.182458770409146 0.176385671498081 0.180279123304414 0.180199571662746 0.172292487977892 0.184661036929938 0.173261355826776 0.177361383142975 0.185394557002122 0.196687135672221 0.177187977018168 0.187901008292594 0.182962709876036 0.171892772771427 3 3 - 6564123 6564278 6564194 6563985 6564430 - gene protein_coding_gene FALSE TRUE AT3G19030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49500.1) -0.394508253818372 -3.92663169032622 0.00397790698502687 1 5.16283166750663 16.0870012911892 -0.394508253818372 0.107621626324914
AT3G03600_at 6.05095358241183 6.52935187438184 5.83803261995743 5.89310706533958 5.13342014018841 5.41289450519243 6.34053008682489 6.55641734181658 4.92070539165911 5.34410953360895 5.27207129361945 5.41897368780985 4.62682281452702 5.00967042308202 5.60132435372396 4.9817770443724 4.91183402452255 4.80918669623668 4.88792375500068 0.205779743617876 0.19492852525847 0.203912809661303 0.201023393170381 0.19492852525847 0.203318675123085 0.201165652313871 0.196772597837249 0.209059863578652 0.200480337714729 0.202781113135086 0.19492852525847 0.200005828024812 0.19492852525847 0.195525691930637 0.196406343372117 0.211825065133004 0.199929779780660 0.204372664134202 3 3 - 867919 868422 868133.091 867667 868585 - gene protein_coding_gene FALSE TRUE AT3G03600.1 RPS2 (RIBOSOMAL PROTEIN S2); structural constituent of ribosome Structural component of the mitochondrial ribosome small subunit Identical to Mitochondrial ribosomal protein S2 (RPS2) [Arabidopsis Thaliana] (GB:Q9GCB9;GB:Q8LGB5;GB:Q9SS62); similar to putative UDP-glucose pyrophosphorylase [Trifolium pratense] (GB:BAE71250.1); contains InterPro domain Ribosomal protein S2, bacterial and organelle form; (InterPro:IPR005706); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) -0.385952494937747 -3.92597937307333 0.00398167744092415 1 5.16198048394753 11.0342736198439 -0.385952494937747 0.103342957805483
AT4G14020_at 9.89021886820997 9.94145362122011 9.87778223750692 10.0574525768063 10.0870282877281 9.69943430843466 9.65099018728466 9.80690486612513 8.7058934323966 8.91101238846963 7.60343440569927 7.50185616868128 7.88000999898532 7.80687059076477 7.25595527290637 8.4621417600677 8.6552517443077 7.18658851424621 8.1376133799573 0.154209178296725 0.154209178296725 0.154209178296725 0.155336759998782 0.162428208439451 0.159473244748052 0.161873085776784 0.158560452459791 0.166001015998354 0.154209178296725 0.156586257094233 0.164566698393213 0.15816660475511 0.164715266708087 0.16980645149802 0.158438622534624 0.162386513438624 0.160137234631667 0.156099462478806 4 4 - 8095372 8095676 8095503.727 8095210 8095731 - gene protein_coding_gene FALSE TRUE AT4G14020.1 rapid alkalinization factor (RALF) family protein contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) -0.341396854870746 -3.92503170253914 0.00398716186215369 1 5.16074377957331 18.0658347644471 -0.341396854870746 0.0791987293394188
AT3G18050_at 9.36392720530948 9.50897293794835 8.33122709781807 8.43117838859932 8.83936820341274 9.300246384155 9.3984754304044 9.75764204257426 10.0441980833887 9.88616309617486 10.3642275130145 10.1961745214645 9.74060009184831 10.0388615486368 10.1923582718550 9.7032268759766 9.41414864362855 10.0965389477051 9.97059178067125 0.144053216845642 0.141970124932510 0.151750938355187 0.148772995153433 0.142531287358651 0.146707004470186 0.136640674001529 0.148809183739368 0.148452985625929 0.140629138705535 0.142876787471405 0.145276451353187 0.141838890589445 0.138460006974393 0.141474473653683 0.139190405148059 0.143804473271626 0.146634189606521 0.143322767509685 3 3 + 6181370 6182546 6181992.273 6180865 6182860 + gene protein_coding_gene FALSE TRUE AT3G18050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28100.1); similar to hypothetical protein MtrDRAFT_AC139526g8v1 [Medicago truncatula] (GB:ABE80139.1) -0.390233326937479 -3.92396504319497 0.00399334454626074 1 5.15935161737982 19.0840053971999 -0.390233326937479 0.105611261378155
AT2G33450_at 11.1313064567880 11.2247732548843 10.4609457939933 10.4119270207626 10.9932525403622 10.7501722897565 11.3829942721668 11.2858465559389 11.0669113429616 11.3701962716553 11.3600074446970 11.5838053483131 11.0148144320414 10.9458334134003 11.8990137884543 11.0739014198696 10.6381993144092 11.1155747857302 11.1477717473844 0.0703139604624392 0.0687064945039454 0.0692592866739831 0.0711037541956353 0.0688782441304163 0.0722232723716197 0.068908230688485 0.0720207778288709 0.0773917240198004 0.0687811667848734 0.0687064945039454 0.0689223148204422 0.0687064945039454 0.075921737215071 0.0689600627248529 0.0698560869403027 0.088009241562295 0.0701622764763727 0.0706442587849955 2 2|0 +|/ 14180701 14181429 14180958 14180655 14181609 + gene protein_coding_gene FALSE TRUE AT2G33450.1 50S ribosomal protein L28, chloroplast (CL28) Identical to 50S ribosomal protein L28, chloroplast precursor (CL28) (RPL28) [Arabidopsis Thaliana] (GB:O22795;GB:Q8VY79); similar to 50S ribosomal protein L28, chloroplast precursor (CL28) (GB:P30956); contains InterPro domain Ribosomal protein L28; (InterPro:IPR001383) -0.296610883847632 -3.92373227066336 0.00399469512627377 1 5.15904778667397 22.1545790384307 -0.296610883847632 0.0488445277182604
AT4G26980_at 5.64225264423216 5.41324701403505 5.94825511443983 5.57769114835699 6.4053940901374 6.25887185167103 5.59270473485821 5.51792355878897 5.3032216816813 4.72352792634301 5.05466099565925 4.66850128589614 4.86128657942441 5.28406564506306 4.93788723680531 5.24316804341547 5.32378429466606 4.88131357320013 4.52536962592360 0.215192168366030 0.205601555293722 0.212494983901599 0.208311213417140 0.21352335986137 0.218409402095777 0.206201288548417 0.211422937177068 0.206163417235665 0.201024502590519 0.206173913039409 0.203835262320374 0.202552864957103 0.204270944752516 0.208147523460239 0.20129284663227 0.205313199916526 0.214022793079126 0.201024502590519 4 0|4 /|- 13548824 13549459 13549147.444 13548552 13550728 - gene protein_coding_gene FALSE TRUE AT4G26980.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45482.1); similar to Os06g0679700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058370.1); contains domain no description (G3D.3.80.10.10); contains domain F-BOX/LRR PROTEIN-RELATED (PTHR23125:SF67); contains domain RNI-like (SSF52047); contains domain F-BOX/LEUCINE RICH REPEAT PROTEIN (PTHR23125) 0.343574054311486 3.92287824448517 0.00399965448564382 1 5.1579329760923 10.7358124536061 0.343574054311486 0.080581473331892
AT1G68560_at 9.40192613237517 9.71735225858054 8.2040394409277 8.3099799092925 9.19824272639066 8.96154068281968 9.65338239565616 9.61773167290989 10.0344542857944 9.82618729251828 10.6192021595967 10.5131193100366 10.2181701592256 10.2570070631744 10.6945055147543 9.94333484036359 9.58208502145283 10.1632490601671 10.0638257225350 0.140099096352623 0.136053601589583 0.152656393389396 0.149506488813252 0.133395478250229 0.142717283111654 0.130911494852994 0.130038819747476 0.142675045045401 0.135633926060630 0.139116925893274 0.135677532101025 0.138485048728273 0.142545231667141 0.131832151915589 0.127309849128878 0.137288944915707 0.132190452351353 0.137857904642279 1 1 - 25738380 25738662 25738514.364 25737845 25741659 - gene protein_coding_gene FALSE TRUE AT1G68560.1 ATXYL1/XYL1 (ALPHA-XYLOSIDASE 1); alpha-N-arabinofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds / xylan 1,4-beta-xylosidase Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 3 of glycoside hydrolases. Identical to Alpha-xylosidase precursor (EC 3.2.1.-) (XYL1) [Arabidopsis Thaliana] (GB:Q9S7Y7;GB:P80846;GB:Q9ZP26); similar to alpha-xylosidase, putative [Arabidopsis thaliana] (TAIR:AT3G45940.1); similar to alpha-glucosidase 1 (AGLU1) [Arabidopsis thaliana] (TAIR:AT5G11720.1); similar to alpha-glucosidase [Solanum tuberosum] (GB:CAB96077.1); similar to putative alpha-glucosidase [Oryza sativa (japonica cultivar-group)] (GB:BAA99366.1); similar to alpha-D-xylosidase [Tropaeolum majus] (GB:CAA10382.2); contains InterPro domain Glycoside hydrolase, family 31; (InterPro:IPR000322) -0.327567858771156 -3.92232282507825 0.00400288335013205 1 5.15720788961854 19.2448526897252 -0.327567858771156 0.0709346518705568
AT3G56070_at 5.76396536054866 6.54590123476116 5.38029806404183 5.29282910998332 5.16612794844549 4.99861549869848 6.09688274247986 6.52772545048427 4.18497604768086 4.80011847818077 4.29296393101131 5.22328795561964 4.50004926134302 4.1302604192703 5.08253009353346 4.71579345417994 4.67574810171442 4.40704940111762 4.84558210122932 0.264788491140767 0.259204431296093 0.255547336278208 0.256845592257851 0.253671295800218 0.254334372588618 0.26021483418649 0.257220220893838 0.263844891759503 0.264878637610621 0.256438992559854 0.261254820990020 0.253241164500482 0.258219762906611 0.267764476045143 0.252432226157562 0.26402662353414 0.259107870136529 0.25381526594195 3 3 - 20817969 20818457 20818232.727 20817728 20819122 - gene protein_coding_gene FALSE TRUE AT3G56070.1|AT3G56070.2 ROC2 (rotamase CyP 2); peptidyl-prolyl cis-trans isomerase|ROC2 (rotamase CyP 2) rotamase cyclophilin 2 (ROC2) exhibiting peptidyl-prolyl cis-trans isomerase activity involved in signal transduction. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-3 (EC 5.2.1.8) (PPIase CYP19-3) (Rotamase cyclophilin-2) (Cyclophilin of 19 kDa 3) (Cyclophilin-4) (CYP19-3) [Arabidopsis Thaliana] (GB:Q38867;GB:Q38901;GB:Q9LYN4); similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to cyclophilin (GB:AAA74096.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.502958128458074 -3.92084393043086 0.00401149429570019 1 5.15527697954104 10.3408861109741 -0.502958128458074 0.157922255360115
AT2G43070_at 8.21517483099019 8.35152615588724 8.00017506831497 7.97061178408557 8.46086463052468 7.7243317334011 8.15692720600063 8.24673202687794 5.50426105817623 6.22264230145769 7.13238312595205 7.44941290408257 7.49579214699652 7.34223562843282 7.08414673220792 7.00882881971225 6.87493530143509 6.78389554397774 6.45065881926895 0.291094547826603 0.286153493500863 0.299199277012968 0.302146725878774 0.292172741137398 0.293557152984714 0.298683817510762 0.284754205458294 0.345916959806791 0.295660466214857 0.288054917347633 0.284754205458294 0.302749640896064 0.288032444334082 0.284754205458294 0.284754205458294 0.349905738373187 0.320969766796468 0.293556388349342 2 2|0 -|/ 17918800 17919677 17919262.286 17917965 17921947 - gene protein_coding_gene FALSE TRUE AT2G43070.1 protease-associated (PA) domain-containing protein similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71293.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.441836065762294 3.91944577578893 0.00401965330283952 1 5.15345115405252 14.7436135136689 0.441836065762294 0.130654699461593
AT2G26530_at 9.12822401138693 9.32946135716292 8.45891899156082 8.36832214004911 9.43288410138265 9.00304191149149 8.22783133746052 8.03052405074457 8.09040146012252 7.900828597057 8.9931721599873 8.88098690551947 8.51058514005608 8.94572528524198 8.19575208618939 8.92092363101936 8.12593629562439 8.38882823787632 8.11651663059252 0.189229108523205 0.182326528404599 0.193148029522672 0.195030638502966 0.181579974989619 0.189787001041419 0.181869041600504 0.182689279084587 0.205562944880019 0.186329784421615 0.185626193920531 0.185206965283087 0.188186005041621 0.187347481477305 0.190326899518724 0.187047498724558 0.199966599726469 0.194309770397738 0.183026323864989 2 2 - 11290213 11290683 11290460.636 11289853 11291307 - gene protein_coding_gene FALSE TRUE AT2G26530.1|AT2G26530.2 AR781 unknown function similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT2G15760.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83385.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442)|similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT2G15760.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83385.1); similar to pheromone receptor-like protein [Quercus robur] (GB:CAE12164.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 0.360552376015444 3.91921594131641 0.00402099620776262 1 5.15315098629087 17.0754781277949 0.360552376015444 0.0903203993527038
AT2G22670_at 10.6472669934666 10.8458902179527 10.0569640545048 10.0567525412812 10.6734267372543 10.582010563277 10.9828226737397 11.1302174005941 11.0977891098331 11.3449368544408 11.6049748778416 11.5865045930634 11.3183670518539 11.1936733793015 11.4530593945360 11.2990882373645 10.6228450804407 11.2079283259784 11.4892521089992 0.0786596632187941 0.0776503614765298 0.0760578677000952 0.0770535497671387 0.076918417103107 0.0836889303844157 0.0775008124912891 0.076459126422465 0.083906217231939 0.0782035659588554 0.0798060447080022 0.0760578677000952 0.0766448435569134 0.0852913039307099 0.08072747628983 0.0760578677000952 0.0858217658128402 0.0790270683341392 0.0767148699621176 2 2|0 +|/ 9644676 9645391 9644970.5 9643520 9645763 + gene protein_coding_gene FALSE TRUE AT2G22670.1|AT2G22670.2|AT2G22670.3 IAA8 (indoleacetic acid-induced protein 8); transcription factor|IAA8 (indoleacetic acid-induced protein 8) IAA8 (IAA8) gene is auxin inducible. Identical to Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) (IAA8) [Arabidopsis Thaliana] (GB:Q38826); similar to IAA9 (indoleacetic acid-induced protein 9), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65670.2); similar to GH1 protein [Glycine max] (GB:AAB70005.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311)|Identical to Auxin-responsive protein IAA8 (Indoleacetic acid-induced protein 8) (IAA8) [Arabidopsis Thaliana] (GB:Q38826); similar to IAA9 (indoleacetic acid-induced protein 9), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65670.1); similar to GH1 protein [Glycine max] (GB:AAB70005.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.292057543784587 -3.91328975850262 0.00405578821880283 1 5.14540827170689 21.9201511354114 -0.292057543784587 0.0456330915410664
AT3G14430_at 7.856998461844 8.51251022070631 8.13914881846656 8.06767796920626 8.81468087244324 8.42162432642897 7.04644227490122 7.26696108445124 8.0123224012362 6.77771442009531 7.59685785731689 7.73388924219007 7.81091490784535 7.784591247641 7.11663535146441 7.6320132361094 7.04244227153843 7.45115052413179 7.09788594987035 0.191184293242635 0.211441105360992 0.200184594033314 0.197780509505459 0.202531163338421 0.221814279181157 0.200162852754594 0.191086056701254 0.188207135936487 0.192628582325490 0.186592688205778 0.191450985856258 0.191662690502202 0.194926399221958 0.197157319017329 0.193804295914625 0.212113505934403 0.188904484055691 0.197869830356485 3 3|0 -|/ 4824411 4824714 4824598 4824203 4824844 - gene protein_coding_gene FALSE TRUE AT3G14430.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09102.1) 0.457571279436472 3.91265453750062 0.00405953654661551 1 5.14457799405909 15.4242735469795 0.457571279436472 0.138219198962586
AT2G29690_at 5.63608470675423 5.64382686419923 4.78724501278488 4.65080577072308 5.29729352726865 5.24675505946115 5.96914548507019 5.57585578592435 5.22066921324904 6.13232319774949 5.72141851897934 6.15545892031735 5.6935686707084 5.71991413499172 5.67282291238688 5.75609906443354 5.18902361056023 5.74418918923207 5.61072631344128 0.210691077453284 0.213336403463360 0.214350416518994 0.222902483807975 0.215777489446103 0.225835318361580 0.206000723658339 0.206676686508706 0.225044573202774 0.206000723658339 0.207946876086520 0.206000723658339 0.206335186144771 0.208669184392546 0.212698173055489 0.210552238625007 0.221838032644165 0.220506269941443 0.224183762614185 2 0|2 /|+ 12703392 12703842 12703635.7 12700948 12704052 + gene protein_coding_gene FALSE TRUE AT2G29690.1 ASA2 (anthranilate synthase 2); anthranilate synthase anthranilate synthase - alpha subunit Identical to Anthranilate synthase component I-2, chloroplast precursor (EC 4.1.3.27) (ASA2) [Arabidopsis Thaliana] (GB:P32069); similar to ASA1 (ANTHRANILATE SYNTHASE ALPHA SUBUNIT 1), anthranilate synthase [Arabidopsis thaliana] (TAIR:AT5G05730.1); similar to anthranilate synthase, alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT3G55870.1); similar to anthranilate synthase alpha subunit [Catharanthus roseus] (GB:CAC29060.1); similar to anthranilate synthase alpha subunit (GB:AAA74900.1); similar to anthranilate synthase alpha 1 [Camptotheca acuminata] (GB:AAU84988.1); contains InterPro domain Anthranilate synthase component I; (InterPro:IPR005256); contains InterPro domain Anthranilate synthase component I, N-terminal; (InterPro:IPR006805); contains InterPro domain Anthranilate synthase component I and chorismate binding protein; (InterPro:IPR005801) -0.329357199186487 -3.91231114748383 0.00406156436941265 1 5.14412913186393 11.0314439194471 -0.329357199186487 0.0725812245710017
AT1G26130_at 5.86928034544274 5.7956255350296 4.87485458351591 5.14614702223539 4.31775027344574 4.41934092913364 5.07755822115464 5.34020079545105 3.84378487342361 4.24423682176638 3.93277896731927 4.83192487193489 3.74474341382123 4.19389760998752 4.05949196810480 4.5986318353864 4.33303127376271 4.58967423110424 4.21566339357331 0.185982050265080 0.183185786547366 0.193251340761478 0.18302413347717 0.187904321216975 0.199426068232188 0.191004963952912 0.189645657925060 0.208671465180709 0.187440052003861 0.195097904549146 0.185451842501215 0.18881827174071 0.19606244600467 0.201653866909547 0.181540092116929 0.208012949233286 0.184111037181062 0.188323526231739 1 0|1 /|+ 9037668 9038191 9037932.1 9033587 9038233 + gene protein_coding_gene FALSE TRUE AT1G26130.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 12 (EC 3.6.3.1) (Aminophospholipid flippase 12) (ALA12) [Arabidopsis Thaliana] (GB:P57792); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to ATPase, E1-E2 type [Medicago truncatula] (GB:ABE85124.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to ATPase, E1-E2 type; Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE84834.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.323424806840154 -3.91166005399296 0.00406541224210471 1 5.14327800163771 9.29846978035046 -0.323424806840154 0.0688588838134711
AT1G53290_at 6.07999166915675 6.73962897401632 5.39506295105224 5.57781855694707 6.25157242469486 6.36939624574809 6.75627611290586 6.83200090350794 6.59366442922778 6.93422969848135 7.00230681280547 7.19577539864093 6.42175787956074 6.56089734473502 7.13715081124833 6.46377387345228 6.27451103706476 6.72088796428273 7.04839629088582 0.199407865926921 0.198582403578227 0.198894783176753 0.197538368524462 0.201554203845937 0.203076451410044 0.202678281393810 0.203759322989006 0.203208665968438 0.206739546189172 0.209532655066311 0.206002863269026 0.205969423622054 0.204773116132719 0.19654579536231 0.200748222816635 0.210721699847710 0.203363851854441 0.202526284637560 1 1|0 +|/ 19876007 19876885 19876430.7 19874967 19877158 + gene protein_coding_gene FALSE TRUE AT1G53290.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G14960.1); similar to UCW98, putative galactosyltransferease [Hordeum vulgare subsp. vulgare] (GB:ABL11234.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.420071351463675 -3.91036013131519 0.00407310624160509 1 5.14157849167461 13.0406665362980 -0.420071351463675 0.120907843531419
AT2G39710_at 7.70250022971395 8.05864237409002 8.28508440585937 8.67805533230064 7.74519711800008 7.34740499328262 7.64134659001339 7.97434772824818 3.79885423156747 4.93591216944345 4.71616216777593 5.45524583512638 5.26232380131206 5.1589518483309 3.95340230805456 4.81932114496608 5.67378581576219 4.00884914168038 3.80240297055792 0.264041062544709 0.264329763911719 0.264047927091709 0.269554920709124 0.266872758706224 0.264041062544709 0.265937870809973 0.267396802204916 0.273196000421473 0.273236308402467 0.264041062544709 0.265013108557098 0.264041062544709 0.265862774537611 0.266847019468009 0.264041062544709 0.272579465634782 0.264327643429970 0.264041062544709 2 2 - 16569169 16569695 16569459.909 16568866 16570458 - gene protein_coding_gene FALSE TRUE AT2G39710.1 aspartyl protease family protein Encodes a Cysteine-rich peptide (CRP) family protein similar to PCS1 (PROMOTION OF CELL SURVIVAL1), aspartic-type endopeptidase/ peptidase [Arabidopsis thaliana] (TAIR:AT5G02190.1); similar to Os01g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044781.1); similar to Peptidase aspartic, catalytic [Medicago truncatula] (GB:ABE83471.1); similar to Os03g0271900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049694.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.43583751626537 3.90951565072008 0.00407811288545668 1 5.14047427401893 12.4591032039714 0.43583751626537 0.128386467443544
AT4G38860_at 8.58100147746139 9.0243099748044 9.01640399755184 9.44750259725463 10.0785120661669 9.86742665613965 9.5396400028775 9.54424689725263 10.2085362822251 9.72740420373597 10.8376170746135 10.4795827911605 10.7327439992835 10.5569596217162 10.4994759312011 10.6688212362482 10.3969065091936 9.61232485145795 10.3511064036722 0.141969051116181 0.135629298971493 0.141815506626366 0.138026358082950 0.130636591246355 0.139362280652079 0.135091491364248 0.139974515970165 0.13455686197896 0.139948917835104 0.132688646941570 0.130636591246355 0.131083539852488 0.134567702521599 0.132764328683011 0.134299487090468 0.136246025229586 0.138619215316233 0.131108656900616 4 4 + 18130351 18130639 18130499.909 18130262 18131054 + gene protein_coding_gene FALSE TRUE AT4G38860.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21220.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.403766723247089 3.90930838672376 0.00407934268749432 1 5.14020324379837 19.6717486078905 0.403766723247089 0.113075922287748
AT4G26110_at 5.97800616132805 6.42917674189574 5.91203083892406 5.77765745547252 6.58457964079122 5.79231775978411 6.14822596541411 6.59687132001229 6.84123756422145 6.94941121040096 6.07793904254045 6.0245373153236 5.96964809875307 6.23816389363634 5.88257325084128 6.09750062995859 5.79739043873118 5.99343456413046 6.70607271050522 0.201898372083622 0.184527863983116 0.199517934343081 0.187635627889540 0.189846774008388 0.192363466546201 0.191286789917011 0.192714894278990 0.193901020312635 0.187151764452761 0.187461829866535 0.186966802453600 0.189239187189443 0.191228623463871 0.192579812533337 0.184527863983116 0.194131549434314 0.190275333261988 0.189485941387125 4 4|0 +|/ 13234051 13235486 13234722.889 13232604 13235888 + gene protein_coding_gene FALSE TRUE AT4G26110.1 NAP1;1 (NUCLEOSOME ASSEMBLY PROTEIN1;1); DNA binding similar to NAP1,3 (NUCLEOSOME ASSEMBLY PROTEIN1,3), DNA binding [Arabidopsis thaliana] (TAIR:AT5G56950.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession Number JS0707 (GB:AAA50234.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.54675785711137 -3.90923157219783 0.00407979856735384 1 5.14010279494269 12.5735526850937 -0.54675785711137 0.177376610387104
AT4G17740_at 6.90937336672248 6.4612223877834 5.85409321607389 5.76127821713669 6.62594928749532 6.05442228324182 7.178891427718 6.66412506070463 6.81168862441333 7.85726360625618 7.01683073188085 7.57590950935157 6.96902984935207 7.09073977329072 7.25051038944553 7.24575616249507 7.01718535395816 7.09739794555752 7.583401494538 0.224698389588172 0.233089874099202 0.23755801960218 0.244491822255307 0.224698389588172 0.247300211255810 0.224698389588172 0.245974103253861 0.238077055870067 0.228622343894477 0.235187353803433 0.228387433888530 0.235077098873866 0.231734419302366 0.235060851548021 0.224698389588172 0.247265420925376 0.230029772007077 0.230782614267765 4 4|0 -|/ 9867128 9868031 9867454.556 9866990 9869765 - gene protein_coding_gene FALSE TRUE AT4G17740.1|AT4G17740.2 C-terminal processing protease, putative similar to peptidase S41 family protein [Arabidopsis thaliana] (TAIR:AT3G57680.1); similar to C-terminal processing protease, putative [Brassica oleracea] (GB:ABD65160.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S41; (InterPro:IPR005151); contains InterPro domain Peptidase S41A, C-terminal protease; (InterPro:IPR004447) -0.494499293532299 -3.90893976530184 0.00408153088210622 1 5.1397211958836 13.7263550089357 -0.494499293532299 0.154889381825143
AT1G62660_at 7.31727970762212 7.86331416563912 7.28090811386499 7.59287210550931 7.23193172518339 7.396951007119 8.91720583968022 9.15323225731695 4.44203117110202 7.97587435817224 7.63504587489729 7.58016310839165 8.31779857730164 7.74099031541996 7.79183045702975 7.93631204271455 8.28552287953193 8.05672590867213 6.02068957673218 0.193020103235650 0.193166872335588 0.204659551539835 0.193507814343862 0.190991088910774 0.204220062630611 0.201360023847486 0.194429534128515 0.216970119746025 0.200735806817164 0.190340122989232 0.192687447664150 0.19104046012762 0.200880142769655 0.195190939746704 0.193515423907375 0.198449746466333 0.201293361545190 0.196107922211263 1 1|0 +|/ 23206439 23207145 23206750.4 23203383 23207430 + gene protein_coding_gene FALSE TRUE AT1G62660.1 beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar similar to ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE), beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G12240.1); similar to acid invertase [Brassica oleracea] (GB:AAG36943.1); similar to acid invertase [Brassica oleracea] (GB:AAG36942.1); similar to soluble acid invertase [Pyrus pyrifolia var. culta] (GB:BAF35859.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) 0.417379011090312 3.9088530236214 0.00408204597626557 1 5.13960776013213 14.8763353723237 0.417379011090312 0.119697670788066
AT4G26060_at 6.85212935490187 7.2538504183352 7.07938336426708 7.57589017663939 7.26462397430724 6.59339917832083 4.79691549067561 5.40622791585367 5.75221050675687 5.2108200776888 5.27857372542668 5.21036918055284 5.23023118762417 5.43589218653976 4.99348392869667 5.82687870496175 5.85430857570572 5.82790381314685 5.07621046318548 0.205128007754052 0.203528564477029 0.191417809285944 0.196014697195367 0.193315325372532 0.195169882689009 0.203296010030149 0.192810386519967 0.196245392720544 0.197971117740336 0.202334233759687 0.193220725919923 0.199172497604065 0.190883598744970 0.194317088160133 0.190391877626862 0.204119439972175 0.19201428580856 0.191549442340068 4 4|0 -|/ 13214983 13215639 13215362.667 13214755 13216470 - gene protein_coding_gene FALSE TRUE AT4G26060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79016.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.580917429365067 3.90621355684286 0.00409775300028698 1 5.13615542440433 12.0046119068504 0.580917429365067 0.191903748092422
AT1G49380_at 7.79044043496366 8.2286546230732 7.60702300282923 7.50217951316655 8.20224480970561 7.77556720642918 9.19524901497585 9.00712573654469 8.48341225061401 8.867742419695 8.36458057489243 8.71432809748129 8.40792217888189 8.64709699126906 8.71969947062462 8.73441566356722 8.2503926500524 8.73410377305193 8.42185422142155 0.145293719430812 0.138265735852563 0.144083368515137 0.140707544843458 0.141926657457207 0.152478785415809 0.144673614765157 0.135540171748413 0.149780854141561 0.138638311635841 0.142318677108841 0.135361557229712 0.140051529400564 0.135361557229712 0.140125568724246 0.139464924319477 0.165588476715166 0.145663820672838 0.145374200968425 1 1 + 18281906 18282806 18282280.091 18280375 18283196 + gene protein_coding_gene FALSE TRUE AT1G49380.1 cytochrome c biogenesis protein family similar to CCS1 [Chlamydomonas reinhardtii] (GB:AAB95195.1); similar to Os03g0769600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051397.1); contains InterPro domain ResB-like; (InterPro:IPR007816) -0.401524679144646 -3.90454792053948 0.00410769808503432 1 5.13397623543966 16.7448457371549 -0.401524679144646 0.112214704635864
AT2G27970_at 4.67450343327944 5.15019513469978 5.04944889521807 5.19501773019939 5.02003428457527 4.57161533698197 4.52154050817663 4.88961709559997 4.16233902719425 4.9815767246724 4.83165797905488 6.10892088459392 5.04963335782039 5.48969072689977 6.26730403024142 5.42657612979614 4.79040888936545 4.9303397656735 4.73013869809583 0.190172975371956 0.194849061785718 0.190947059169227 0.192860870874960 0.196702188462882 0.200918788915952 0.194089303505815 0.197372787941122 0.204630794162948 0.205634116692520 0.190172975371956 0.195632429290412 0.192936158505013 0.205167768826527 0.192108019357401 0.19696822577608 0.196509464058818 0.207460639228900 0.190600264969418 2 2|0 -|/ 11919540 11920162 11919730.8 11919289 11920374 - gene protein_coding_gene FALSE TRUE AT2G27970.1 CKS2 (CDK-SUBUNIT 2); cyclin-dependent protein kinase similar to CKS1 (CDK-SUBUNIT 1), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT2G27960.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36296.1); similar to putative CDK regulatory subunit [Ipomoea trifida] (GB:AAS79576.1); contains InterPro domain Cyclin-dependent kinase, regulatory subunit; (InterPro:IPR000789) 0.443598336290621 3.90447707260289 0.00410812167010066 1 5.13388353336746 9.87724719588373 0.443598336290621 0.132251902985391
AT2G37790_at 4.68793520380899 4.69113031685876 3.69562207924849 4.15536026822485 4.50647452492182 4.68989099608032 6.55013217377914 6.24116403319129 4.77511371306206 6.17139572915879 6.03205350514539 6.46611077973327 5.69003125445891 6.12716647004536 7.04885587009942 5.73299035762552 6.05024349243217 6.1746653288406 5.98228327189093 0.255137692451518 0.247004784887564 0.250149574896830 0.255764529344220 0.240525037037728 0.252992473811704 0.235165436949918 0.251027051378843 0.26819740713923 0.241722201247559 0.240336940164668 0.240291083562493 0.247022406011431 0.246276960883991 0.24024678068352 0.234869023133339 0.241286542550471 0.241191348558294 0.239815490739854 2 2|0 +|/ 15847181 15847755 15847427.75 15845842 15848010 + gene protein_coding_gene FALSE TRUE AT2G37790.1 aldo/keto reductase family protein similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to aldose reductase [Di (GB:CAC32834.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.379209868598511 -3.90416556041412 0.0041099846894066 1 5.13347592063469 10.8063114680150 -0.379209868598511 0.100977407446645
AT3G08930_at 9.21245634452548 9.18503094393185 9.35778236390418 9.41503150729612 9.46297821504935 9.37823544879442 9.28048270245674 9.27472832909905 9.13448535566427 8.833718620056 9.46239461596316 9.47450564603193 9.20597447122427 9.13173372912658 9.6091034939396 9.18823389235633 9.15219220520183 9.44816670638172 8.91758227329956 0.101344041753279 0.100110947688307 0.104441268143389 0.10104592961789 0.100222433223433 0.104369860778488 0.102216376831944 0.0989717930726885 0.104608933995921 0.101332855143126 0.098552922922424 0.0980155183756863 0.0973368771226053 0.101043548366923 0.101277611766873 0.100451569159105 0.101076732508292 0.0997177232986865 0.102798453295642 3 3|0 +|/ 2715674 2716895 2716402.6 2713410 2717318 + gene protein_coding_gene FALSE TRUE AT3G08930.1 similar to LMBR1 integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G01460.1); similar to LMBR1 integral membrane family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44783.1); similar to Os06g0128200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056670.1); contains InterPro domain LMBR1-like conserved region; (InterPro:IPR006876) 0.268720824556318 3.90368334590054 0.00411287038238234 1 5.13284491289089 18.4688241542329 0.268720824556318 0.0183503776367707
AT1G16610_at 6.7966204902301 6.95177507710083 6.45806398008071 6.61308846332967 6.6870452320611 6.46001631646506 6.5153923922885 6.32595880244077 7.35965594594258 7.41545555993108 6.88879940017354 6.81203922763984 6.87572582145688 6.94488791791437 6.86150020415305 6.97963548908521 6.69737245903839 6.95750155491151 7.46704893225168 0.181402936028017 0.175937770408683 0.175937770408683 0.175937770408683 0.184259565004617 0.185512583410425 0.179577309934507 0.182493893215358 0.190615101904298 0.175937770408683 0.182881386952699 0.179941900150821 0.177677012067998 0.180003915344158 0.181081385298085 0.175937770408683 0.185004088508132 0.183490248110841 0.179862124770160 1 1|0 -|/ 5676804 5677276 5677039.222 5675697 5678773 - gene protein_coding_gene FALSE TRUE AT1G16610.1|AT1G16610.2 SR45 (arginine/serine-rich 45); RNA binding SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. similar to splicing factor PWI domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G29210.1); similar to putative ar (GB:ABB55376.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.314876956304713 -3.90218796443923 0.00412183286891840 1 5.1308878693491 13.7466132135854 -0.314876956304713 0.0637096813208763
AT4G18530_at 5.84451171327007 5.92055741046155 6.08540970727378 6.14063840472622 6.60513400032723 6.09492204868643 5.92062078339157 5.81333779303697 4.525659141958 4.3931075242129 4.51467873696577 4.57106392865855 5.33915265150985 5.06377604915752 4.56327409368055 4.9415590741401 5.29588216005133 4.57478688209761 4.55790884289401 0.183093330749488 0.180957592674601 0.190994414640823 0.184698385064341 0.188145791207905 0.187757562960156 0.182288569591357 0.183588113550247 0.198500240110711 0.181921201113995 0.193486105575957 0.182113380385261 0.182331482814821 0.187629184102879 0.197876877152656 0.183638099153439 0.181463128437333 0.188739184995871 0.189538798672915 4 4|0 +|/ 10219373 10220030 10219686.3 10217349 10220511 + gene protein_coding_gene FALSE TRUE AT4G18530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11170.1); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91850.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) 0.361282821278863 3.90010472549153 0.00413435338052621 1 5.12816086771665 10.7282649160072 0.361282821278863 0.0916796232706692
AT1G31410_at 6.54786866904358 6.26831063790088 5.4016452859468 5.42167459237363 6.56671686835759 6.18193961132273 6.80299016267716 6.82464351664444 7.61895715367523 7.0226637918349 7.7630753986603 7.39424836728396 7.20587744407797 7.68802348543326 7.38333854765306 7.21337588676603 6.43338304757136 7.199466256919 7.12822241451771 0.171246968908037 0.181696611976852 0.181381678483901 0.175979951035412 0.184621056145148 0.181966236561429 0.176101267985000 0.176152667087559 0.191861099666670 0.179674233144760 0.170942847419218 0.170678592993543 0.171870650789978 0.179611284066418 0.176298514640170 0.176744338901495 0.177251327548728 0.181685034008147 0.175318472434614 1 1 - 11247088 11247722 11247379.182 11246895 11249340 - gene protein_coding_gene FALSE TRUE AT1G31410.1 putrescine-binding periplasmic protein-related similar to B0403H10-OSIGBa0105A11.16 [Oryza sativa (indica cultivar-group)] (GB:CAH67864.1); contains InterPro domain Bacterial periplasmic spermidine/putrescine-binding protein; (InterPro:IPR001188) -0.344737528056662 -3.89916814140472 0.00413999557076159 1 5.12693462744455 13.5228301718525 -0.344737528056662 0.0824649091779383
AT2G40765_at 8.46691532519274 8.13125059813607 8.39158739960937 8.50816977565755 7.90109570085643 7.86131989766755 7.7485035575662 7.5929673059238 7.63632005184829 7.30573742182564 8.10773160637654 8.39797182554309 7.52415728732299 7.98065699124357 7.9899100802236 7.90198811231479 7.49615110437827 7.49161153942467 7.26220618050576 0.168598503587079 0.173726009850575 0.171241444847899 0.164137560786501 0.164191402308569 0.164216471332758 0.166566020015199 0.176641830310198 0.179634313965466 0.168901450329066 0.165305248451994 0.166026905953504 0.168854029125214 0.168120156906132 0.175611402647648 0.165229245471641 0.171709135977902 0.167451700316499 0.171087196652907 2 2|0 +|/ 17019379 17020134 17019477.111 17019276 17020403 + gene protein_coding_gene FALSE TRUE AT2G40765.1 similar to Ubiquinol-cytochrome c reductase complex 6.7 kDa protein (CR6) (GB:P48505) 0.320242548518284 3.89883977705405 0.00414197565388411 1 5.1265046760725 15.7065729632829 0.320242548518284 0.0674770957306915
AT1G31940_at 8.82994961136876 8.67368250008358 9.07167003253963 9.25108678758592 9.29349668466709 8.98500787154673 9.04374535997449 8.93207586383391 8.3751885537213 8.34818870401035 8.72535265959795 8.284745048022 8.80978619522792 8.88965291992764 8.49934252025726 8.77833687483276 8.85153933594712 8.60670556759044 8.21431895511578 0.113760467534603 0.112819132360646 0.117856042987282 0.118161874814325 0.120376205263754 0.122780967908217 0.123316274508689 0.121116597474565 0.127447612405827 0.129842658468338 0.121631265469968 0.120315112987903 0.120100218865646 0.112819132360646 0.117450863239969 0.115654838082005 0.125301402547369 0.116095192829604 0.119824824695968 1 1 - 11470286 11471079 11470551.273 11470039 11471320 - gene protein_coding_gene FALSE TRUE AT1G31940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35585.1); similar to Os02g0697700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047822.1) 0.324284623081281 3.8980663352827 0.00414664360803044 1 5.1254918822673 17.5067133611789 0.324284623081281 0.070134169629776
AT4G20280_at 6.6793100931621 6.87032496482621 6.86484508444792 6.80402793603081 7.34400212866635 7.05384676607903 6.96249634368494 6.79341872628836 6.51130438170978 6.42212440272097 7.02070110444415 7.00354510178822 6.62072247159784 7.26978345110767 6.87496420668031 6.90957786829017 6.58390232325974 6.78409359564252 6.36624426965396 0.166322910367607 0.166517432234671 0.166168427189423 0.168777653198582 0.170080412827420 0.175737349199189 0.166089404198858 0.158953923021877 0.180562168021908 0.161335118792976 0.160161840111289 0.161135011364176 0.162322887748002 0.165399915637706 0.16275603006782 0.156610654165735 0.166439896863281 0.162285584080048 0.159219000135489 4 4|0 +|/ 10953847 10954640 10954163.889 10953557 10954984 + gene protein_coding_gene FALSE TRUE AT4G20280.1 transcription initiation factor IID (TFIID) 28 kDa subunit (TAFII-28) family protein similar to transcription initiation factor IID (TFIID) 28 kDa subunit (TAFII-28) family protein [Arabidopsis thaliana] (TAIR:AT1G20000.1); similar to transcription initiation factor IID p30 beta chain-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73490.1); similar to Os01g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043872.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain TAFII28-like protein; (InterPro:IPR006809) 0.320239930402692 3.89499384257274 0.00416524250296055 1 5.12146759296181 13.5798518137547 0.320239930402692 0.0676824692581305
AT1G78680_at 10.3088786561776 10.2845556738903 10.3256702562570 10.3136172920628 10.5759000755219 10.3704684101052 10.9970918247042 10.9103034880415 9.79059792087862 10.3237717986821 10.8633452456425 10.8369545734304 10.9033079136681 10.8796185709158 10.6599173510455 11.0267260998968 10.8427267627159 10.8914607968111 10.0878134776301 0.0989493619697154 0.0989493619697154 0.109198181507081 0.100560176372430 0.0989493619697154 0.101032795690745 0.100920910524004 0.101231325828599 0.110097095032974 0.104480606734002 0.101243593208427 0.101681907656898 0.100958132047896 0.109378279252627 0.102097215022665 0.102101878248613 0.106076572061363 0.101710618571748 0.102877701004576 1 1|0 +|/ 29599446 29600888 29600102 29598674 29601163 + gene protein_coding_gene FALSE TRUE AT1G78680.1 ATGGH2 (GAMMA-GLUTAMYL HYDROLASE 2); gamma-glutamyl hydrolase The Arabidopsis protein AtGGH2 is a gamma-glutamyl hydrolase acting specifically on monoglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. Identical to Gamma-glutamyl hydrolase precursor (EC 3.4.19.9) (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GGH) [Arabidopsis Thaliana] (GB:O65355;GB:Q8VYT0;GB:Q9ZV86); similar to ATGGH1, gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78660.2); similar to Gamma-glutamyl hydrolase precursor (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GB:P93164); similar to Os05g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056052.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.283409681492761 3.89362827645805 0.00417353729470057 1 5.11967850354415 20.9760114912598 0.283409681492761 0.0388781335293412
AT4G25500_at 9.23367274580383 9.23847600554149 8.35785794467943 8.52106884922805 9.37385932543067 9.26335621421817 7.91820261571566 7.72011842378186 7.65966830534966 7.85691321355022 8.21009861153726 8.50195867189049 7.8985665578262 8.1237430477618 8.08484210180512 7.52634465986215 7.73659593666744 7.70882402765515 7.6980285063374 0.174318594736894 0.171093051928512 0.170149832940767 0.166167097834925 0.171107840869678 0.17441258589463 0.164510225080146 0.168553631080514 0.170505923931319 0.164510225080146 0.165476194018517 0.164510225080146 0.168241101005458 0.176824983814345 0.170709841500119 0.169719762031514 0.171692008268718 0.170531167135977 0.165166465900446 4 4|0 +|/ 13026693 13027056 13026858.3 13024581 13027450 + gene protein_coding_gene FALSE TRUE AT4G25500.1|AT4G25500.2|AT4G25500.3 ATRSP35 (Arabidopsis thaliana arginine/serine-rich splicing factor 35); RNA binding|ATRSP35 (Arabidopsis thaliana arginine/serine-rich splicing factor 35) encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Identical to Arginine/serine-rich-splicing factor RSP40 (RSP40) [Arabidopsis Thaliana] (GB:P92965;GB:Q96333); similar to ATRSP41 (Arabidopsis thaliana arginine/serine-rich splicing factor 41), RNA binding [Arabidopsis thaliana] (TAIR:AT5G52040.2); similar to splicing factor-like protein [Vitis riparia] (GB:AAS00039.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Arginine/serine-rich-splicing factor RSP40 (RSP40) [Arabidopsis Thaliana] (GB:P92965;GB:Q96333); similar to ATRSP41 (Arabidopsis thaliana arginine/serine-rich splicing factor 41), RNA binding [Arabidopsis thaliana] (TAIR:AT5G52040.2); similar to splicing factor-like protein [Vitis riparia] (GB:AAS00039.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.293543247904159 3.8907111232174 0.00419131587038371 1 5.11585558370859 16.5593640373606 0.293543247904159 0.0483653437422643
AT2G17510_at 8.21747882107533 8.08323272461535 8.18247834624119 7.95893204939357 8.52968245303981 8.53549971320915 8.22656947113697 7.8809833145878 7.17289304459965 7.44554192461048 6.00752361330251 6.00151107270918 6.80995423194772 6.45777792342789 6.26447014398897 6.72660242421346 7.25269223463646 6.60874689303045 7.51372973152648 0.242414206686970 0.244409212078681 0.251749489453967 0.245566133557291 0.259006629666032 0.246377948898447 0.24425971684273 0.242434119244885 0.245706847219474 0.242414206686970 0.253140522199372 0.247424571393504 0.242414206686970 0.242414206686970 0.251589320048582 0.242414206686970 0.264923099038966 0.242414206686970 0.242907189765887 2 0|2 /|- 7616505 7617652 7617374.375 7616318 7623082 - gene protein_coding_gene FALSE TRUE AT2G17510.1 ribonuclease II family protein similar to ribonuclease II family protein [Arabidopsis thaliana] (TAIR:AT1G77680.1); similar to hypothetical protein [Homo sapiens] (GB:CAH56266.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85401.1); similar to PREDICTED: KIAA1008 [Pan troglodytes] (GB:XP_509678.2); contains InterPro domain Nucleotide binding protein, PINc; (InterPro:IPR006596); contains InterPro domain Ribonuclease II and R; (InterPro:IPR001900) -0.330823179402359 -3.88482797573880 0.00422741676094696 1 5.10814148825768 15.1486311370304 -0.330823179402359 0.0749265929593472
AT1G13120_at 6.38559453368328 6.34611924683846 5.94068020338724 6.12743940880472 6.6319764511114 6.03226886911557 6.71808458560773 6.5340391884306 6.01124979749393 5.76996447527351 5.75101309801257 5.54405503969518 5.53637652569436 5.5718059014286 5.15303702994999 6.02091876778793 5.32764798819623 5.68006439400667 6.41118718030215 0.220169054899065 0.220037894304599 0.228675033279647 0.216390804933966 0.212314468119576 0.222274103583385 0.213511054138652 0.218117733547943 0.248040585838527 0.220377602984350 0.221946332676547 0.214914180375483 0.216764500138227 0.222945532851211 0.22586721521945 0.215467722183458 0.230340772232303 0.218407723081267 0.219893643809802 1 0|1 /|- 4469391 4470114 4469726.625 4469179 4473211 - gene protein_coding_gene FALSE TRUE AT1G13120.1 EMB1745 (EMBRYO DEFECTIVE 1745) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G05523.1); similar to putative GLE1L protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16837.1); similar to Os02g0596100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047319.1); contains InterPro domain GLE1-like; (InterPro:IPR012476) -0.401943565064354 -3.88384289442873 0.00423349386623042 1 5.10684927597709 12.1581496412655 -0.401943565064354 0.113474146959894
AT1G09280_at 6.43284605563581 6.64717722428091 5.90200265154369 5.8068183832186 7.12011423993895 6.27512617104001 5.76948492760388 5.79899900901063 6.23338739094286 6.29747654861515 5.08401948684665 5.37099833371884 5.25421119097632 5.59422179834749 5.02298555047941 5.55169138623391 5.63906298543783 5.36419569762903 6.79787605736857 0.238902893247838 0.230766954539502 0.229770941223897 0.232731993158864 0.230406978681262 0.247094262310918 0.225479660247453 0.226115024749864 0.247428124723051 0.23472941307835 0.225479660247453 0.227992091656804 0.229932414423628 0.229671060233158 0.230718068465739 0.225479660247453 0.235761587215784 0.225479660247453 0.225999742686471 1 1 - 2998254 2998780 2998470.545 2998102 3001317 - gene protein_coding_gene FALSE TRUE AT1G09280.1 similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40760.1); similar to Os12g0563400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067036.1); similar to Phospholipase/Carboxylesterase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98960.2); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Protein of unknown function DUF341; (InterPro:IPR005645) -0.484425735648835 -3.88369754539902 0.00423439133295046 1 5.10665859621978 12.1206144007928 -0.484425735648835 0.151842407702103
AT1G71780_at 7.64392018538791 7.78661574414293 7.77829264172216 7.68185890438774 7.58612457087156 7.48021597446184 7.17800467919696 7.55375659597564 5.54384485804929 5.84459897380639 6.13856736763397 6.32512040337914 6.4985773120803 5.95347052999069 6.4968340828108 6.13514306842414 6.23217051781553 6.05916147235205 5.60058590624381 0.207237944937177 0.202658901312213 0.206183685134398 0.20338056582964 0.204916044336917 0.204735057684941 0.208359570912295 0.201102330090815 0.22627387483666 0.213708947492599 0.206878220616781 0.215565756595201 0.217497288877194 0.213647800068919 0.203325156906131 0.201529447452132 0.224386266225327 0.217545257633349 0.204925130167771 1 1|0 -|/ 26999129 27000217 26999699.1 26998748 27000312 - gene protein_coding_gene FALSE TRUE AT1G71780.1 similar to Os01g0184700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042235.1); similar to Os01g0715800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044066.1) 0.328959701647981 3.8835878800498 0.00423506860277190 1 5.10651472669902 13.5325439155237 0.328959701647981 0.0738413567696838
AT2G27040_at 5.56584442034619 5.20589546031272 4.21692290860293 4.0305971117756 4.50586102468348 5.52838252123557 5.80994072882638 6.17709137918785 6.05575835866079 5.73923093285129 5.82450739254961 6.64394753853699 5.28242921612063 5.59253499237662 7.06430901945491 6.12972300293652 5.86598363407706 6.00821818923924 6.59240311354125 0.216390665176891 0.21681646224176 0.222335967944791 0.214458514030302 0.214458514030302 0.215336641031814 0.214458514030302 0.229375274140224 0.237407968340919 0.224087439463079 0.214458514030302 0.215635416973324 0.226164661273389 0.218179313142198 0.225473245832702 0.214544956717707 0.222350091758065 0.219956913235298 0.214458514030302 2 0|2 /|- 11543922 11544629 11544241.778 11543612 11549435 - gene protein_coding_gene FALSE TRUE AT2G27040.1 AGO4 (ARGONAUTE 4) similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21030.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21150.1); similar to PAZ domain-containing protein / piwi domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G32940.1); similar to AGO4-2 [Nicotiana benthamiana] (GB:ABC61505.1); similar to Argonaute and Dicer protein, PAZ; Stem cell self-renewal protein Piwi [Medicago truncatula] (GB:ABE82627.1); similar to AGO4-1 [Nicotiana benthamiana] (GB:ABC61504.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain Stem cell self-renewal protein Piwi; (InterPro:IPR003165) -0.598463142058444 -3.88288103706443 0.00423943668594374 1 5.10558737500642 11.2203606567943 -0.598463142058444 0.200671069637108
AT4G38710_at 6.20979433808407 6.47226831442488 5.94429915762698 5.48915628107992 5.75075725482084 5.7925674462563 7.28837027747899 7.57527592883814 5.88720966199955 5.61899916260376 6.08891953792392 6.22208070623183 6.32285573876965 6.26818543922769 6.1566530904678 6.61625483472803 6.41290304048852 4.99301856769536 5.76710645153355 0.207301511587955 0.204362335057055 0.202868262570166 0.208233076475772 0.211165283035742 0.210774791289247 0.218128421362849 0.212578079111344 0.222718120935117 0.209709013513845 0.20417505417243 0.207698770773099 0.209562447532015 0.211114471249906 0.209462130202131 0.202014290695453 0.209939755885535 0.220545738685264 0.215219240902229 4 4 - 18078175 18079185 18078918.636 18077784 18080077 - gene protein_coding_gene FALSE TRUE AT4G38710.1 glycine-rich protein similar to eukaryotic translation initiation factor, putative (EIF4B5) [Arabidopsis thaliana] (TAIR:AT1G13020.1); similar to Os02g0439700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046743.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC28254.1); contains InterPro domain Plant specific eukaryotic initiation factor 4B; (InterPro:IPR010433) -0.382447534515600 -3.88032019552541 0.00425530219728291 1 5.10222696083007 12.2617514389032 -0.382447534515600 0.103848742782970
AT2G44350_at 10.0778404421019 10.0372908607671 10.5711921111453 10.5283086438043 9.8419797172954 9.73300701837271 10.0883654874475 10.0976337959925 9.4638523491913 9.72838175742445 9.91208997448024 10.0173026535247 9.92757576760613 9.96326462219363 10.0736637018863 9.90920905957548 9.91449864310436 9.85364585273163 9.31430203170477 0.0722973484635681 0.0719428710731339 0.0723801335290986 0.0714936404586083 0.0707960506564398 0.0745350415758287 0.0711806126981791 0.0761923583876157 0.0808091169984303 0.0714011959508009 0.070943965535325 0.0699973331653896 0.0733076435403563 0.0728239593853853 0.0754512769606766 0.0713127596591695 0.0753216817059896 0.0745817534454073 0.0710428664920478 2 2|0 +|/ 18326104 18327550 18326929.333 18323354 18327865 + gene protein_coding_gene FALSE TRUE AT2G44350.1|AT2G44350.2 ATCS (CITRATE SYNTHASE 4); citrate (SI)-synthase encodes a mitochrondrion targeted citrate synthase, the first enzyme of the tricarboxylic acid cycle, catalyzing the condensation of acetyl-CoA and oxaloacetate, finally yielding citrate and CoA. Identical to Citrate synthase 4, mitochondrial precursor (EC 2.3.3.1) (CSY4) [Arabidopsis Thaliana] (GB:P20115;GB:O64869;GB:Q8LE36;GB:Q94EY6); similar to CSY5 (CITRATE SYNTHASE 5), citrate (SI)-synthase [Arabidopsis thaliana] (TAIR:AT3G60100.1); similar to Citrate synthase, mitochondrial precursor (GB:O80433); similar to mitochondrial citrate synthase precursor [Citrus junos] (GB:AAR88248.1); similar to Citrate synthase, mitochondrial precursor (GB:P49298); contains InterPro domain Citrate synthase; (InterPro:IPR002020); contains InterPro domain Citrate synthase, eukaryotic; (InterPro:IPR010109) 0.26878339884575 3.88014406497072 0.0042563957251453 1 5.10199579748821 19.8462447581965 0.26878339884575 0.0215063233295115
AT1G01290_at 4.96260559303803 6.07954208349141 6.38151469998911 6.63587980763002 6.87583430727916 6.53778330171797 5.69403162152589 5.97656150809866 5.37531387047493 5.60422324217236 5.82729941581075 5.73572952767927 5.84958987741466 6.32990764974576 5.45361802939015 6.62056393760119 6.64634551134023 5.22920248816992 5.93609728520339 0.234078535718277 0.221873690618816 0.227231942655368 0.221873690618816 0.229812057919208 0.23255149969469 0.225557652572347 0.235276806410316 0.233773146590514 0.221873690618816 0.222451706213373 0.222870981365479 0.222905895292822 0.231928171987882 0.232989220449502 0.221873690618816 0.243391563548974 0.228075870700884 0.225576988575766 1 1 + 114831 115268 115084.364 114286 115549 + gene protein_coding_gene FALSE TRUE AT1G01290.1 CNX3 (COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3); catalytic COFACTOR OF NITRATE REDUCTASE AND XANTHINE DEHYDROGENASE 3. Encodes a protein involved in molybdenum cofactor biosynthesis. Homologous to E.coli MoaC. Expression is low in all tissues examined, except in roots. Appears to have targeting signals for chloroplast or mitochondria Identical to Molybdopterin biosynthesis protein CNX3 (Molybdenum cofactor biosynthesis enzyme CNX3) (CNX3) [Arabidopsis Thaliana] (GB:Q39056); similar to Molybdopterin cofactor biosynthesis MoaC re (GB:ABE77419.1); contains InterPro domain Molybdopterin cofactor biosynthesis MoaC region; (InterPro:IPR002820) 0.626277541487998 3.87937720854606 0.00426116033821102 1 5.10098927412391 11.9430075423101 0.626277541487998 0.212395985786777
AT4G31450_at 7.66264530090647 7.64651846585286 8.08020075491336 8.1727645737689 8.39333016768643 8.2055786980693 8.44243873920793 8.23240727309346 7.31279194649193 7.76690907232442 7.47665066859774 7.49076969163291 7.92494129269017 8.06806516112659 7.70752423956514 8.44366345942445 8.21061074607148 8.12037241608855 7.58433732079304 0.149356054457505 0.147832130507750 0.146710567658141 0.157403079447354 0.149203957285915 0.153063091687109 0.157694272550415 0.151915138448931 0.180655054248949 0.157773923475589 0.152853373617761 0.148342229054489 0.158057287318752 0.159613152514259 0.154235073993819 0.147767757592078 0.148667159743784 0.151136614699365 0.152321001488434 4 4|0 -|/ 15255972 15257037 15256700 15255629 15258818 - gene protein_coding_gene FALSE TRUE AT4G31450.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G24870.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE80412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.296305683353743 3.87863823496204 0.00426575708898543 1 5.10001925680967 15.8469875746554 0.296305683353743 0.0513922724012048
AT4G00100_at 10.5768629290613 10.6255877509561 10.1678450486700 10.1506880281763 10.1025459709870 10.2310361060747 10.5008287339570 10.8553686589969 10.2681867255552 10.2572028531135 10.0886228219392 10.3939443796539 10.0284437492269 9.87806394366714 10.7010669947551 9.79439078590014 9.88589684119671 9.82215662002097 10.1638988346243 0.104824464670025 0.104707815012172 0.103585433038653 0.104989412836845 0.104172406669141 0.105471750487188 0.104798349702234 0.1078972858984 0.108820724916015 0.106416878190923 0.105711648232245 0.100759734268284 0.106045546298333 0.107645627426448 0.108432760896271 0.106681763475012 0.106368656663481 0.112728204098747 0.102215119102694 4 4|0 +|/ 37273 37786 37531.625 37084 38312 + gene protein_coding_gene FALSE TRUE AT4G00100.1 ATRPS13A (RIBOSOMAL PROTEIN S13A); structural constituent of ribosome Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;GB:Q93V69;GB:Q93WJ4;GB:Q9LZY6); Identical to 40S ribosomal protein S13-2 (RPS13B) [Arabidopsis Thaliana] (GB:P59224;GB:O81311;GB:P49203;GB:Q9SLR4); similar to 40S ribosomal protein S13 (RPS13A) [Arabidopsis thaliana] (TAIR:AT3G60770.1); similar to cytoplasmic ribosomal protein S13 [Panax (GB:BAA96366.1); contains InterPro domain Ribosomal S13S15 N-terminal; (InterPro:IPR012606); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) -0.316161383575928 -3.87861486323573 0.0042659025579141 1 5.09998857634019 20.5532634390979 -0.316161383575928 0.065869239275209
AT2G41140_at 7.08077181732951 7.27617899745424 7.58692709176825 7.50628427257495 7.00596412920962 7.23268416117355 8.04735197031893 8.18910284529265 7.63797818906299 7.45175687835539 7.22600473064662 7.19502605676264 7.05778665869852 6.82799961203686 6.80010758140803 7.57964382509141 7.62544496399994 7.05302706439826 7.3125549379263 0.169974518720244 0.166655225639467 0.162695044826061 0.166077235435237 0.172509950592401 0.182945138517622 0.177301969920145 0.164436995112382 0.176086238367493 0.172734861316258 0.163649278316794 0.16458371186615 0.170551660230375 0.189495625521368 0.187095994628256 0.166988862216517 0.181292852250614 0.174168486036548 0.168281123752662 2 2|0 +|/ 17159484 17160427 17160050.1 17157465 17160768 + gene protein_coding_gene FALSE TRUE AT2G41140.1 CRK1 (CDPK-RELATED KINASE 1); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase Encodes CDPK-related kinase 1 (CRK1). similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G19100.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G56760.1); similar to putative calcium/calmodulin-dependent protein kinase CaMK [Oryza sativa (japonica cultivar-group)] (GB:BAC16472.1); similar to CDPK-related protein kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96128.1); similar to Protein kinase [Medicago truncatula] (GB:ABD33022.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.306093217034257 -3.87637178471598 0.00427988842944056 1 5.09704363252031 14.8096881923461 -0.306093217034257 0.0589866445972796
AT3G18110_at 5.29324091534437 5.78521587939909 4.79021758857713 4.58546061273763 5.50293515868567 5.52892633837674 6.05712305945213 5.71536057383658 5.34524111847631 5.76988163673824 5.05929777273846 5.95130129126279 5.50218893205958 5.19374106661852 5.79007251040085 5.50184714260148 5.33908940523532 5.38673671552044 5.80949043094146 0.207802517967291 0.191919986251523 0.205881036070324 0.214395940617095 0.193136014808674 0.197246235489202 0.191919986251523 0.197426340792943 0.2086035937405 0.19515883024286 0.193107812206572 0.198763773664904 0.19419282545016 0.199321008884173 0.207650540080313 0.194558606884464 0.211215171479846 0.193935729571009 0.194521555328148 3 3 - 6205082 6205822 6205323.455 6204810 6209697 - gene protein_coding_gene FALSE TRUE AT3G18110.1 EMB1270 (EMBRYO DEFECTIVE 1270); binding similar to PGR3 (PROTON GRADIENT REGULATION 3), binding [Arabidopsis thaliana] (TAIR:AT4G31850.1); similar to Os06g0199100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057065.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47632.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.393426778288868 -3.87585123326075 0.0042831411133931 1 5.09636008147427 10.9608460574378 -0.393426778288868 0.109646473900278
AT1G03730_at 6.51289570867808 6.86873902644258 6.59684948573524 6.71454036486516 6.6710113852114 6.815419973852 5.49905557478572 6.20924551948425 5.6700353317989 5.60011692407937 5.83879455417923 6.46962876062588 6.00040986796255 6.210163200002 5.7966096893842 5.88828153629285 6.20637345038212 5.99649866165101 5.40551715612426 0.232535964428821 0.231221125149953 0.231955487147651 0.235667067941412 0.240711849680804 0.230373673616109 0.226514151357052 0.222510193189758 0.229730046169103 0.227293213097013 0.228930622935672 0.219853562566309 0.219075439980873 0.219075439980873 0.234308594478176 0.219810282619990 0.225280343662616 0.224884428312443 0.222961165544636 1 1 - 931067 931474 931292.091 930828 931895 - gene protein_coding_gene FALSE TRUE AT1G03730.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03600.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA97787.1) 0.459629919730381 3.87454926667581 0.00429128803762153 1 5.09465023785082 12.2906703477455 0.459629919730381 0.141195978702725
AT2G25560_at 6.50805956751464 6.95022873903996 6.49427467449799 6.83685701713761 7.16593620567123 7.11590366479093 6.287234523934 6.42180567694381 5.42349056283464 5.41560871452724 5.82768110564854 5.77589844831322 5.53599405663374 6.18102423617668 5.72068338888472 5.95384932773899 6.07945753154347 5.70387846940458 5.54101970705752 0.196147567140372 0.196731394792324 0.196631127894262 0.197746808506619 0.194938177119593 0.2018992253509 0.197145683858028 0.20191547093239 0.218547367503957 0.196322037600556 0.197321104630382 0.193996254174435 0.207158888792969 0.19616780074685 0.193996254174435 0.195126581126281 0.216763419098775 0.204288682799434 0.196132853003510 2 2 + 10890406 10890802 10890626.182 10887749 10890946 + gene protein_coding_gene FALSE TRUE AT2G25560.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G53150.1); similar to Aminotransferase, class-II; Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78703.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.374339711368099 3.87453126158385 0.00429140081836751 1 5.09462659022356 12.3762114996993 0.374339711368099 0.0999364669689343
AT3G32930_at 9.29497938454162 9.28598595513904 9.24978050921368 9.35500312286315 9.89804062330886 9.36393213363938 8.91037189682573 8.78593685501953 8.88874999208875 8.76862519827374 9.32661108865788 9.37762792612866 9.05994960112393 8.90714097950744 9.68598596708294 9.1368270721876 8.7820336539179 8.88726897925045 8.7626795128617 0.153377616717885 0.148668049743605 0.153547282823323 0.146303227972594 0.149449222109549 0.162586691945077 0.150506252972693 0.150674327736322 0.168397111913850 0.157990588376221 0.149818105701504 0.150161277107024 0.150018037372477 0.158030213723997 0.147998590847728 0.157316478217818 0.163602806706630 0.16050634690913 0.158445941327677 3 3 + 13493470 13494390 13493816 13493231 13494562 + gene protein_coding_gene FALSE TRUE AT3G32930.1 similar to Os07g0608100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060239.1) 0.368058165891077 3.87391657427512 0.00429525300748392 1 5.09381923702938 18.2440615898473 0.368058165891077 0.096648920921380
AT1G18470_at 8.35474749068969 8.52967932040413 8.51948132622988 8.43738699212651 9.06129388842603 8.79841873821443 7.79166904041808 8.04163955227616 7.23357179788122 7.00094241474304 7.07782680181433 7.02430173576041 7.16952103620613 7.56588368652691 6.86589803788366 7.27846049797716 7.23628117568134 6.85570363920997 6.79959047057609 0.198564538895059 0.191030474724331 0.191867153281778 0.195461992147739 0.193783536146926 0.188629493936774 0.187014403501714 0.187014403501714 0.204006385439916 0.199141339989741 0.190023829928350 0.191903808719307 0.188066161086099 0.189253872724807 0.197997655886102 0.191534609947162 0.198435209552131 0.196883989814616 0.193467890908 1 1|0 -|/ 6356682 6357551 6357246 6356124 6360159 - gene protein_coding_gene FALSE TRUE AT1G18470.1|AT1G18470.2 zinc finger (C3HC4-type RING finger) family protein similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G68820.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90658.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73950.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains domain FAMILY NOT NAMED (PTHR13568) 0.323788866975620 3.87345726133756 0.00429813388518659 1 5.09321591801543 15.5145909456561 0.323788866975620 0.0711271986436953
AT4G02340_at 9.39520755695062 9.247235657496 9.33548335263318 9.35705290582506 9.83485984457779 9.52763893992514 9.31961201970045 9.21432684574394 8.52919172093548 8.56880763096076 8.65958852363442 8.87497713471745 8.96484598263447 9.00615070080806 8.56586946724553 8.82032487129978 9.0100314920283 9.02437086339384 8.29913494514607 0.133199605094536 0.134166209130637 0.137480334848615 0.140028587956646 0.137200115257854 0.137188658147541 0.130453131398818 0.139310531296376 0.142607061923328 0.136213232032589 0.136955747180285 0.134094762791219 0.137044902448874 0.131376349217813 0.146117068287965 0.135122203427702 0.142798620850380 0.130145383152507 0.141966794872368 4 4|0 +|/ 1036138 1037372 1036982.9 1035683 1037615 + gene protein_coding_gene FALSE TRUE AT4G02340.1 epoxide hydrolase, putative similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.309860843945169 3.87283228833242 0.0043020571145407 1 5.09239494501096 18.0696677962654 0.309860843945169 0.0618729309162294
AT4G38890_at 8.25531675812165 8.41095215640415 8.06472119543191 8.31151828669049 8.51457938286895 8.27660005553477 8.43507976720333 8.4728429392204 7.49297058691829 7.75897654434827 6.7480072227445 7.08561731338724 7.62988851687085 7.01860325595808 7.09077577993358 7.38392075637801 7.48598812718463 7.11352880681954 7.91700905219229 0.162399728057844 0.162213055643816 0.164994451551331 0.164670662159976 0.164783862407696 0.159857007120815 0.163747464367639 0.162593485587314 0.172299249367128 0.166686213021262 0.170734297525966 0.16282434716673 0.168315808980841 0.164185950166087 0.174655158083581 0.162410424037556 0.170542636518402 0.171509580769127 0.160748441224133 4 4|0 -|/ 18135946 18136576 18136257.444 18135794 18139094 - gene protein_coding_gene FALSE TRUE AT4G38890.1 dihydrouridine synthase family protein similar to FAD binding / oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G49640.1); similar to H0613H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66003.1); similar to Os04g0117600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052053.1); contains InterPro domain Dihydrouridine synthase, DuS; (InterPro:IPR001269) -0.315068673591287 -3.87221993887532 0.00430590480191168 1 5.0915904925892 15.8014646261324 -0.315068673591287 0.0654849912589684
AT2G45710_at 6.74178949362088 6.83472743818744 6.91905587056876 7.35370844955801 6.78959620822498 6.86000208949403 7.21725456076098 7.28342112514739 5.60321834274712 5.83985605684569 6.11014842967139 6.90059450784792 6.02484706097051 5.87518253874508 7.11663752225009 6.25749921126438 6.79610490863616 6.34897245453813 5.71134905472985 0.215162329934956 0.207569276633206 0.203317709030332 0.211815506665312 0.211972593386422 0.204642504144278 0.210561636345660 0.214949058761998 0.221760471830750 0.208768990933460 0.206080376225048 0.214833888459831 0.210960286915292 0.203317709030332 0.207315881149471 0.210918387895876 0.210685606177145 0.215073758732708 0.209653804324804 2 2|0 +|/ 18838623 18839029 18838865.5 18838235 18839285 + gene protein_coding_gene FALSE TRUE AT2G45710.1 40S ribosomal protein S27 (RPS27A) Identical to 40S ribosomal protein S27-1 (RPS27A) [Arabidopsis Thaliana] (GB:O64650); similar to ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G61110.1); similar to ribosomal protein S27-like protein [Solanum tuberosum] (GB:ABA40465.1); contains InterPro domain Ribosomal protein S27E; (InterPro:IPR000592) 0.335949838915923 3.87172327076925 0.00430902830097937 1 5.09093796746884 13.0733891447860 0.335949838915923 0.0787152085134573
AT1G78380_at 12.0717233119087 12.2392273263420 12.7140320106896 12.7203372975403 11.9489462231494 11.9092223430791 12.2915058969138 12.2299087020774 11.5010092321668 11.9369370232074 12.2329709400172 12.28462326415 12.1425491448923 12.0992083471062 12.2410590588972 12.1354661911466 11.8561315898100 12.2447953349781 11.7198666839507 0.0840565278678103 0.080969262200056 0.0809704885516254 0.0821684445535414 0.080969262200056 0.0825318194770798 0.0817633963114858 0.0835594904265064 0.093760750992397 0.0811663443834749 0.080969262200056 0.081663491177996 0.0892542818696807 0.0859567812238129 0.0870495591827601 0.0833300008927584 0.0921894188263574 0.086369268873438 0.080969262200056 1 1 - 29491577 29492496 29491961.364 29491306 29492799 - gene protein_coding_gene FALSE TRUE AT1G78380.1 ATGSTU19 (GLUTATHIONE TRANSFERASE 8); glutathione transferase Encodes a glutathione transferase that is a member of Tau GST gene family. Expression is induced by drought stress, oxidative stress, and high doses of auxin and cytokinin. naming convention according to Wagner et al. (2002) The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. similar to ATGSTU25 (Arabidopsis thaliana Glutathione S-transferase (class tau) 25), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G17180.1); similar to glutathione transferase [Carica papaya] (GB:CAA04391.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.275186331701939 3.87025506809432 0.00431827581633566 1 5.08900879971148 24.2025486207873 0.275186331701939 0.0316598068650180
AT1G54130_at 10.7833772455853 10.8082777938303 10.7636307695521 10.7892785308127 11.0934116872922 10.9494593382972 10.6503464500214 10.6721244455947 10.9857382201498 10.8802588123701 11.5205293622253 11.1802852133685 11.3788788618414 11.3567600839898 11.1692543324559 11.4372338853636 11.0127416452747 11.1387084281488 10.8432364438838 0.0686935036187043 0.0675381643291736 0.0686130394204871 0.0676567961193368 0.0674488091703136 0.074401349114298 0.06671853708204 0.0675218655974738 0.0723222504591681 0.0694594530216119 0.068543396618273 0.0672454526923644 0.0690251195475270 0.0686396011232532 0.0722223236198611 0.0674265571812069 0.0712068161125687 0.0722614436305113 0.0689491258017099 1 1 + 20216808 20217358 20217094.091 20214543 20217609 + gene protein_coding_gene FALSE TRUE AT1G54130.1 RSH3 (RELA/SPOT HOMOLOG 3); catalytic similar to RSH2 (RELA-SPOT HOMOLOG), catalytic [Arabidopsis thaliana] (TAIR:AT3G14050.1); similar to RelA-SpoT like protein PsRSH1 [Pisum sativum] (GB:BAC97801.1); similar to RSH2 [Nicotiana tabacum] (GB:AAQ23899.1); similar to RSH-like protein [Capsicum annuum] (GB:AAK82651.1); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) 0.270817374423115 3.86929085302244 0.00432436045504429 1 5.08774166289826 21.9024266836489 0.270817374423115 0.0259434308269008
AT4G34950_at 11.5016073064558 11.6545375537708 11.2342239381876 11.4043148824556 11.7787143360847 11.6437354948918 10.8539587521287 10.8681639744281 11.5022542025336 11.2157481196366 11.9958669733198 11.1223001694230 10.7480322769661 11.4357421705786 11.4365630993712 10.5971805118072 11.1645787902705 11.5667885822159 10.2105098934221 0.0756340063281788 0.0743973976174066 0.0774414041261025 0.0759523898788567 0.0775133112280404 0.080633460660012 0.0743973976174066 0.0756781077094274 0.083722842776471 0.0771649675545879 0.0775098786419192 0.0750871931819131 0.0743973976174066 0.0756788220898091 0.0763469585676777 0.0743973976174066 0.0799553613538417 0.0778900530444992 0.0785252376613354 4 4 - 16642639 16643550 16643051.091 16642321 16644823 - gene protein_coding_gene FALSE TRUE AT4G34950.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os09g0536700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063787.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.288945549711196 3.86562651733175 0.00434756755332069 1 5.08292474122371 22.4846831849378 0.288945549711196 0.0460272268955195
AT1G18590_at 9.2081010702055 9.59514746213483 8.6308264451428 9.1287019688238 9.3185758294033 8.89682938582387 9.28893523398178 9.3446891188109 6.38955731330428 8.56846712615548 9.02885980852424 8.9919178668433 8.97060194914476 9.02687798568208 7.67060128446656 8.45309073094094 8.66847660700141 8.88097505850317 7.45312215365563 0.188160827294780 0.190404034381653 0.188208740390635 0.182519909784701 0.186122407675189 0.191967386225165 0.182089826729387 0.191045053743971 0.216664726213156 0.182586601127444 0.18377780991393 0.182089826729387 0.182089826729387 0.18909516069919 0.206666411301023 0.186273932636601 0.195819121130002 0.183857518251011 0.203855458450483 1 1 + 6399067 6399637 6399311.545 6398572 6399934 + gene protein_coding_gene FALSE TRUE AT1G18590.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74090.1); similar to Flavonol 4'-sulfotransferase (F4-ST) (GB:P52837); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.437779074849185 3.86473807387817 0.00435321423864874 1 5.08175651562990 17.2673794938376 0.437779074849185 0.131642570712259
AT2G26660_at 8.19757035747604 8.11935834276598 7.4241466732346 7.5714485999325 7.79125584116374 7.36871905853422 8.15687856469935 8.26949455830131 7.14258114014364 7.61226619054896 7.42328616192038 7.7372464754458 7.48913481116313 7.10312153772798 7.30983231117793 7.15542637838376 7.27593812402729 7.30302698027133 7.38646416533783 0.181084997368440 0.166626618093756 0.179431020872934 0.171410076217776 0.172827636115842 0.176919665983733 0.171865803054366 0.178766187777021 0.177398987146694 0.172495877177760 0.174179088733527 0.169501537936911 0.171282930111294 0.173888210073454 0.172683187626279 0.171967587874599 0.173029749193631 0.170547004384082 0.167985837646586 2 2 + 11347375 11347700 11347536.545 11346010 11348028 + gene protein_coding_gene FALSE TRUE AT2G26660.1 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G20150.1); similar to SPX, N-terminal [Medicago truncatula] (GB:ABE90284.1); similar to Os06g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058013.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331) -0.338871740211592 -3.86125412127085 0.00437543273231997 1 5.07717418132769 15.2273908809426 -0.338871740211592 0.0809915556740573
AT1G64230_at 12.2131574721011 12.3326188068314 12.4789106772071 12.4394781562377 12.8372555530369 12.7695954705225 11.9787370088399 11.9230356024149 12.2742376747329 12.2145675438162 12.6721147106191 12.1352443695025 12.5003058491831 12.4055139339517 12.0563458367582 12.3015936833560 12.2511521785689 12.1947223997196 12.3905478208144 0.0712247603636143 0.0712247603636143 0.0758223046156883 0.0714726523019345 0.0736803439065632 0.0783209469358314 0.071760929046738 0.0729675425956165 0.0868673538430287 0.0722164198803442 0.0745420306976127 0.0728192020948938 0.0717011784943619 0.0745107677602715 0.0752267429546406 0.074933221555909 0.0741085231010127 0.0782696776631443 0.0730290618574031 1 1|0 +|/ 23837492 23838777 23838453.333 23837221 23839199 + gene protein_coding_gene FALSE TRUE AT1G64230.1|AT1G64230.2 UBC28; ubiquitin-protein ligase similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G27960.2); similar to ubiquitin carrier-like protein [Arachis hypogaea] (GB:ABI84263.1); similar to ubiquitin conjugating enzyme E2 [Solanum lycopersicum] (GB:CAA51821.1); similar to Ubiquitin-conjugating enzyme E2-17 kDa (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (GB:P35135); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.270464591061903 3.85845806111319 0.00439335165971625 1 5.07349518141412 24.6754694933965 0.270464591061903 0.0265324279756535
AT1G56010_at 6.5194311424281 6.19458177968379 7.42310793378129 7.19206962537054 8.30327266534154 7.6688528680618 5.81869198634872 5.64241726594957 6.35592133921523 6.638066271066 6.21814285209059 4.20268946542481 6.0401952791299 6.56534989893695 4.23735907770159 5.87577102550373 6.90874635174557 5.67451686604797 6.31903069910035 0.233038417064336 0.238074052209654 0.246036002138660 0.245196317579253 0.251688144830619 0.252094540504062 0.259075214541847 0.239435868001921 0.246536492042154 0.234130107273875 0.235467555666771 0.254529730991188 0.241557510727195 0.242201066551265 0.247888044592751 0.235994848623473 0.242477914313896 0.245852140877480 0.243791373071585 1 1 - 20950531 20951146 20950803.455 20950236 20952946 - gene protein_coding_gene FALSE TRUE AT1G56010.1|AT1G56010.2 NAC1 (Arabidopsis NAC domain containing protein 21, Arabidopsis NAC domain containing protein 22); transcription factor Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). NAC1 (NAC1) Identical to NAC domain-containing protein 21/22 (ANAC021) (ANAC022) (NAC1) [Arabidopsis Thaliana] (GB:Q84TE6;GB:Q9SE10;GB:Q9SGS9); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT3G12977.1); similar to NAC domain protein NAC1 [Phaseolus vulgaris] (GB:AAK84883.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.440359405907515 3.85803334994634 0.00439608031066524 1 5.07293624372037 12.9218127193039 0.440359405907515 0.133203431938562
AT3G02450_at 7.01303214332946 7.44968703067429 6.97702069075107 6.81422422553257 7.56162878255055 6.6666654985558 7.89926793831906 7.71223065517346 7.52960170104327 7.67171531279897 6.85942277032593 7.45522863679872 6.87519728060288 7.18944638758942 7.02909228774408 7.11885058227617 6.55994101626465 6.51095824856336 7.34712114019263 0.198931431736487 0.188856544264892 0.191370428983217 0.192085572237710 0.197642925863574 0.198712142889942 0.194794169911528 0.194687728280207 0.195270640642087 0.185484556316826 0.189399280536381 0.181449022317283 0.181449022317283 0.184639193819871 0.195841762929453 0.191005282934001 0.198850728201054 0.203498160494122 0.184118057786367 3 3 - 502888 503665 503302.091 502714 505237 - gene protein_coding_gene FALSE TRUE AT3G02450.1 cell division protein ftsH, putative similar to ATFTSH6/FTSH6 (FtsH protease 6), ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15250.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96869.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.540024271300438 -3.85751766446395 0.0043993958733827 1 5.07225754058874 14.4946762219186 -0.540024271300438 0.177590885287043
AT2G43940_at 6.33547019930263 7.06940694308796 7.0881232592303 6.66704109681295 7.00253416178473 6.89197295937757 5.74070958272427 6.05135075089101 4.99824475977748 4.78612767894317 4.43965059310344 4.4759522885573 5.21096843159037 5.4810988504214 5.30035686925882 5.09482547105529 5.86925035781548 5.52898764126999 4.62421690448398 0.326785830265604 0.336837316802924 0.337381147702525 0.330842498717951 0.336820579289670 0.344508740651813 0.326785830265604 0.326785830265604 0.336363337548463 0.341026635626248 0.33671794901778 0.329335608988543 0.326785830265604 0.326785830265604 0.340955385450386 0.333058596363755 0.338250945133574 0.326785830265604 0.340719456821715 2 2 - 18204123 18204735 18204472.571 18203029 18204763 - gene protein_coding_gene FALSE TRUE AT2G43940.1 thiol methyltransferase, putative similar to thiol methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G43910.1); similar to thiol methyltransferase 1 [Brassica oleracea] (GB:AAK69760.1); similar to Os06g0153900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056843.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Thiopurine S-methyltransferase; (InterPro:IPR008854) 0.492728349391193 3.85459327042211 0.00441824851063172 1 5.06840787434011 11.5948258327942 0.492728349391193 0.157155650613236
AT3G12630_at 10.3889646399879 10.6678312055679 10.6711259920206 10.7927157535016 11.0259330044905 10.8003157778765 10.356519292449 10.5467682597714 9.81389296987415 9.50764355139806 10.3270915310381 9.91957251574022 10.2967048406644 10.062388949343 9.82228645030116 10.3121499899417 10.1164059890480 9.422670729232 9.82703922756713 0.0891050259071364 0.0886379260015457 0.0907668956353813 0.0920977210337467 0.0923886218722774 0.0940743621181347 0.0902806699060836 0.0886379260015457 0.0969663718190021 0.0929776640990692 0.0887056440644406 0.0901541086471196 0.0886379260015457 0.0939647619046579 0.0901950862593431 0.0886379260015457 0.0924049414700218 0.0981737241959072 0.090362578355905 3 3 + 4012798 4013155 4012966.727 4012615 4013590 + gene protein_coding_gene FALSE TRUE AT3G12630.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 5 (AtSAP5) (SAP5) [Arabidopsis Thaliana] (GB:Q9LHJ8); similar to DNA binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G51200.2); similar to Os08g0504700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062181.1); similar to PVPR3 (GB:AAA33773.1); similar to Os09g0486500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063521.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.325609370331022 3.85331105300292 0.00442654167981569 1 5.06671952787042 20.5318221360549 0.325609370331022 0.073349139946957
ATCG00270_at 10.4010306776456 10.8436722664722 11.641395175902 10.9494463391542 11.8225496298587 10.4935366304894 11.7000865017928 11.2631614127443 11.4214557793179 10.9110746266473 12.5277633367108 12.9155066421230 12.9217982298058 12.4362075033118 12.0272100476444 12.4156577310664 12.0553789444141 12.2618804648696 10.7843969654362 0.115021171325818 0.110592372459527 0.112226185458158 0.112643529917579 0.110379886160834 0.12254414277075 0.113786135940728 0.112873314312537 0.112391383058444 0.119771904055563 0.114624345572816 0.110220366749984 0.110641222055811 0.113647979905879 0.116001141237744 0.11086120231688 0.114401549927294 0.114604271118705 0.123991339470898 C C + 33173 33697 33379.778 32711 33772 + gene protein_coding_gene FALSE TRUE ATCG00270.1 PSII D2 protein Identical to Photosystem II D2 protein (Photosystem Q(A) protein) (PSII D2 protein) (psbD) [Arabidopsis Thaliana] (GB:P56761); similar to photosystem II protein D2 [Spinacia oleracea] (GB:NP_054928.1); similar to photosystem II protein D2 [Nandina domestica] (GB:YP_740645.1); similar to photosystem II protein D2 [Glycine max] (GB:YP_538760.1); contains InterPro domain Photosynthetic reaction centre protein; (InterPro:IPR000484); contains InterPro domain Photosystem II reaction centre protein PsbD/D2; (InterPro:IPR005868) 0.790471900606703 3.85183984891364 0.00443607761526803 1 5.06478200632539 22.8814354057376 0.790471900606703 0.280749064677476
AT1G65700_at 6.45749494889177 6.47880664757733 6.85193847730811 6.72450724709545 6.78783191022964 6.5548637131484 6.32768616384521 5.80435009357263 4.9705690243323 5.41508040495577 5.36950324788409 5.60151538084499 5.57626557187026 5.21609559764395 6.00210872267111 5.33386880152256 5.35194824663104 5.5741499324602 5.26094357831776 0.241348182966064 0.235022635643618 0.235031987255451 0.234246165191136 0.234927999183434 0.23905489910431 0.238745044270013 0.237822942493452 0.234469273377667 0.234926706359833 0.236491634451232 0.233848487847794 0.241042376082398 0.243428389277189 0.233848487847794 0.236001899398057 0.24608276611543 0.239520591404618 0.238627795626682 1 1|0 -|/ 24438129 24439509 24438642.125 24437909 24439950 - gene protein_coding_gene FALSE TRUE AT1G65700.1|AT1G65700.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G19120.1); similar to Os05g0594900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056510.1); similar to PREDICTED: similar to CG2021-PA [Apis mellifera] (GB:XP_624537.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.375175904314709 3.84992197294674 0.00444854162109396 1 5.06225570700063 11.8577913703217 0.375175904314709 0.101624165864902
AT2G33740_at 6.9179536649377 7.02197286114321 7.30932510241712 7.46423402809798 7.7982449827555 7.58244979959843 6.49177538461872 6.96625051020763 6.6899170026334 6.7028498509523 7.12003062032496 6.47024175486887 7.1242494749424 7.05704829049162 6.69098485041476 6.88891771561906 6.80472043027497 6.38161323780886 6.94292575173354 0.205641111636301 0.198953689495079 0.209503599823282 0.202980760809085 0.205186095019235 0.208722553642818 0.198491144462896 0.196590969457967 0.205962240209509 0.198845456091750 0.193878310053686 0.199008629274831 0.193878310053686 0.209759967454956 0.199112863854818 0.194294735651097 0.217153631945254 0.195596999703240 0.193878310053686 2 2|0 +|/ 14276674 14278533 14277358.333 14276657 14278799 + gene protein_coding_gene FALSE TRUE AT2G33740.1|AT2G33740.2 CUTA encodes a copper binding protein that forms tetramers in vitro. Gene is expressed in all tissues examined and protein is localized to the chloroplast. Identical to Protein CutA, chloroplast precursor (Copper-binding protein CutA) (AtCUTA) (CUTA) [Arabidopsis Thaliana] (GB:P93009;GB:Q9C5X6); similar to Os10g0378300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064480.1); similar to Protein CutA, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66054.1); contains InterPro domain CutA1 divalent ion tolerance protein; (InterPro:IPR004323) 0.363868484030275 3.84625499614765 0.00447247674322945 1 5.05742376496208 13.9919207910302 0.363868484030275 0.0958090033143642
AT4G11090_at 6.13721024730711 6.4734829519421 5.64378958139887 5.57746488225994 6.25291519078098 6.09022482739534 6.7442558536535 6.8196296075022 5.75669468779843 5.31644063955592 5.48764885153772 5.46788300450513 5.47776481807687 5.7127512452389 5.49167383494561 5.3423549477648 5.1463059099968 5.58008866949671 5.24982382914112 0.218737216499644 0.223896624004539 0.223006185860506 0.225253093125855 0.212403725786888 0.227357985487228 0.213016462318846 0.217625576235407 0.215953064280472 0.216395235192619 0.212449343836682 0.211910694095215 0.217650046097408 0.215856444604805 0.217765867089420 0.213022229712590 0.214717017188718 0.211489522635560 0.212834577816811 4 4 - 6764687 6765192 6764975.182 6764533 6766264 - gene protein_coding_gene FALSE TRUE AT4G11090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23790.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); similar to Os06g0524400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057758.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.315111759972809 -3.84617709162746 0.00447298672775937 1 5.05732108724348 11.6695192906269 -0.315111759972809 0.0669405447704895
AT2G33990_at 5.24939062417966 6.00582154029515 6.30029008970518 6.25667724560555 7.02094338282213 6.65150762190042 6.37505726218636 6.4129013091699 6.27378971277551 6.41149345524722 7.64239711176161 6.50064275023517 6.82430043846314 6.74784122521573 6.43222388930113 6.62374015472915 7.24720069427393 6.89819279076656 6.74874997935262 0.194391103719164 0.202588624013831 0.203364895955390 0.201459846913757 0.195921352662645 0.201070914436722 0.206822070998711 0.194259901295468 0.216761703656439 0.203009986171559 0.199890358756459 0.194608158912103 0.194677385978391 0.210895240518387 0.196178554114479 0.194259901295468 0.214617456523025 0.199860192675122 0.195512657214260 2 2 - 14367581 14368264 14367829.818 14367355 14369320 - gene protein_coding_gene FALSE TRUE AT2G33990.1 IQD9 (IQ-domain 9); calmodulin binding similar to IQD10 (IQ-domain 10), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G15050.1); similar to Os06g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056849.1); similar to IQ calmodulin-binding re (GB:ABE78154.1); similar to Os01g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044716.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.466559116884367 3.84380087617997 0.0044885718826627 1 5.05418877646294 12.9553628499673 0.466559116884367 0.146024173853143
AT1G79270_at 7.2206418624473 6.98055654325533 9.07081087629197 8.57462475879488 8.41067209746462 8.08203876361391 9.2955798738088 9.04399967887271 6.65264930131859 8.22372585813338 7.86194343708565 7.22545683134798 8.58257749651976 7.98221025027483 6.13889762245529 8.91818007417987 9.56925765103193 7.25136099318678 7.68797825718263 0.194360940786384 0.196600128869928 0.182347708879858 0.189817641856806 0.182347708879858 0.182347708879858 0.182347708879858 0.186751388394557 0.209024381770952 0.187037923643281 0.195295561520018 0.19313460186649 0.186140890418964 0.194457004335208 0.201269678472439 0.185424378576351 0.182530469389977 0.20096820928308 0.187359896975659 1 1 + 29822869 29823617 29823172.545 29820399 29823997 + gene protein_coding_gene FALSE TRUE AT1G79270.1 ECT8 (evolutionarily conserved C-terminal region 8) similar to ECT6 (evolutionarily conserved C-terminal region 6) [Arabidopsis thaliana] (TAIR:AT3G17330.1); similar to rubisco subunit binding-protein beta subunit-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73484.1); similar to Os01g0679900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043869.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.409563270038692 3.84355202537032 0.00449020739098487 1 5.05386069016343 16.0662088985129 0.409563270038692 0.119286529087376
AT1G71440_at 5.04618646945255 5.45507021447637 4.58645195032799 4.45755977105736 5.19899830284746 4.62701009378525 5.26338833362288 5.40890318968837 4.83262235728005 5.18554063319287 4.96692682537447 5.16460554177597 4.75915413761144 5.14787425662497 4.90450623488782 4.86508487873316 4.2076904454776 4.72958627760992 5.3263373364082 0.224297118476307 0.228561623265815 0.22826577335836 0.232085209815986 0.239096530495650 0.228628359808493 0.239457817412448 0.225040562967128 0.262135250622138 0.231055289367190 0.224858475474064 0.233195702107362 0.229182678370497 0.226697511495073 0.229066209886415 0.225801721606099 0.238511852685726 0.240322474022553 0.225978322345414 1 1|0 -|/ 26924960 26926250 26925552 26924722 26928048 - gene protein_coding_gene FALSE TRUE AT1G71440.1 PFI (PFIFFERLING); protein binding Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G10020.2); similar to PREDICTED: similar to tubulin-specific chaperone e [Tribolium castaneum] (GB:XP_970901.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain CAP-Gly; (InterPro:IPR000938) -0.423768444918656 -3.84169081546434 0.00450245985905861 1 5.05140654284377 9.9844520491851 -0.423768444918656 0.126240286835860
AT2G33310_at 7.69107856756056 7.59024496715004 8.1272684685728 8.08809296451294 7.98557225930796 7.96821102899228 7.36136366849086 7.96231809565596 7.95240127150127 7.40532450575582 7.93608526282935 8.07267195645291 8.10203019836667 8.35868660416673 8.29180732764756 8.27470670236046 8.02455024409329 7.61022718182965 7.77375465441495 0.126972859507113 0.128561947012161 0.125838413641548 0.128616868586634 0.133306159127447 0.128226882176557 0.131217412282944 0.124656798072883 0.127329426560878 0.129341393134099 0.125044324758756 0.121487271734602 0.124099142141694 0.130825682076390 0.131244819226516 0.121487271734602 0.130233849716143 0.134442799593266 0.122815898223538 2 2|0 -|/ 14121648 14122309 14121997 14121358 14123164 - gene protein_coding_gene FALSE TRUE AT2G33310.1|AT2G33310.2 IAA13 (indoleacetic acid-induced protein 13); transcription factor Auxin induced gene, IAA13 (IAA13). Identical to Auxin-responsive protein IAA13 (Indoleacetic acid-induced protein 13) (IAA13) [Arabidopsis Thaliana] (GB:Q38831;GB:Q84TE5); similar to IAA12 (AUXIN-INDUCED PROTEIN 12), transcription factor [Arabidopsis thaliana] (TAIR:AT1G04550.2); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.38219353156323 3.84115025882169 0.00450602504740088 1 5.05069367263293 15.7439383335016 0.38219353156323 0.105712148044687
AT4G30350_at 6.49274189617978 6.70328898448863 6.19790126159556 6.44890403538529 6.48699817323305 6.18351630870565 5.67304745815451 5.56976137723855 6.07531359733188 5.99361599526869 6.82516493781448 7.52762526851277 6.0423685154961 6.65352033663302 6.60430004149265 6.72879836812545 5.78831539683957 5.83826423161415 6.08806096236865 0.189309189178861 0.193371904859504 0.203959288610922 0.197724282471255 0.198688569430931 0.198525437187221 0.192813852862273 0.191863848697335 0.204205166084152 0.191702887991492 0.194045288169617 0.200851969644912 0.194511562984406 0.200983905563935 0.206063118374592 0.19187991628748 0.202479014315629 0.202382558209322 0.195790699152972 4 4 + 14850382 14850954 14850685.364 14847746 14851149 + gene protein_coding_gene FALSE TRUE AT4G30350.1 heat shock protein-related similar to heat shock protein-related [Arabidopsis thaliana] (TAIR:AT5G57710.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE86426.1); contains domain ATP-DEPENDENT CLP PROTEASE-RELATED (PTHR11638:SF2); contains domain ATP-DEPENDENT CLP PROTEASE (PTHR11638); contains domain no description (G3D.3.40.50.300); contains domain Double Clp-N motif (SSF81923); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) 0.334167233895402 3.83953656682475 0.00451668588840513 1 5.04856530198506 12.4962073479005 0.334167233895402 0.0793228149109926
AT3G51580_at 6.5418218161441 6.44908434699416 7.17080728686092 6.51470333097039 6.85010101726316 6.80423434777801 6.22513168490973 5.89693587812972 6.11986426527095 5.93925247194527 6.29912305366282 6.16488142848226 5.93294065130994 6.30253776314517 6.33469040073591 6.22540245610688 6.28311253192915 5.94423611876338 5.60289738979452 0.190916847363403 0.188485600898018 0.188886952671487 0.191008676037423 0.188736072039931 0.1943617860344 0.194828942584713 0.193220295062889 0.191664647966543 0.191127928060759 0.197188096272416 0.196546251579144 0.191337616757542 0.187364908489833 0.193844351965932 0.194678803249549 0.191040579876018 0.195211880846757 0.191929038709550 3 3 - 19142149 19142815 19142386.182 19141813 19144306 - gene protein_coding_gene FALSE TRUE AT3G51580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64385.1); similar to Os05g0478200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055846.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01366.1) 0.427622786176856 3.83914047242624 0.00451930678562092 1 5.04804281099459 12.5932042600582 0.427622786176856 0.128211069646562
AT4G26860_at 8.74074162306619 8.75224756433867 8.85710247119206 8.81511036488902 9.12288970782795 8.62674867445414 9.85664743934904 10.0610933249238 9.91397099123164 9.87902160346123 9.6192977446751 9.4644292955272 9.41620077169406 9.81815236044625 9.43383954169534 10.1285889997497 9.41157031602915 9.53663717758642 9.67608092160115 0.155346659690741 0.146406220522234 0.15055733866707 0.143530500152702 0.146738614628943 0.151481864497728 0.150474172991206 0.151784935718854 0.147125428354243 0.144257315377446 0.145855842093344 0.142142889706014 0.140804504019052 0.141955929233294 0.147669207256184 0.142694465839799 0.151776892993917 0.138019126811112 0.143309299896261 4 4|0 -|/ 13503322 13504539 13503965.8 13503092 13504786 - gene protein_coding_gene FALSE TRUE AT4G26860.1 alanine racemase family protein similar to alanine racemase family protein [Arabidopsis thaliana] (TAIR:AT1G11930.2); similar to Os05g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054662.1); similar to Proline synthetase co-transcribed protein (ISS) [Ostreococcus tauri] (GB:CAL50357.1); contains InterPro domain Alanine racemase, N-terminal; (InterPro:IPR001608); contains InterPro domain Protein of unknown function UPF0001; (InterPro:IPR011078) -0.358327331417281 -3.83898971649686 0.00452030474042916 1 5.04784394109367 18.8173796619335 -0.358327331417281 0.0931686466679376
AT1G78660_at 7.0595950536271 7.04270768371307 6.46590728717844 6.98814439966337 7.58582565707623 7.04971882620727 6.69139561313183 5.97243437915231 5.21133522202373 6.02942727953102 6.68938432905996 6.47339234657177 6.29079195746028 6.3706034082333 6.49977490869996 6.83350566067941 6.33425656567036 6.43779413668849 5.97395719057699 0.207139282096903 0.196003701599418 0.196436069611897 0.203352844301809 0.199928306257416 0.197935980960532 0.192498255359425 0.197845738565297 0.210582129203334 0.201663318698999 0.201640827483170 0.193141643834946 0.195325798169005 0.199498363336250 0.195071465070932 0.199962763070281 0.200761341439056 0.202360236827918 0.193684906443727 1 1|0 +|/ 29591520 29592438 29591992.375 29590570 29593193 + gene protein_coding_gene FALSE TRUE AT1G78660.1|AT1G78660.2|AT1G78660.3 ATGGH1; gamma-glutamyl hydrolase The Arabidopsis protein AtGGH1 is a gamma-glutamyl hydrolase cleaving pentaglutamates to yield di- and triglutamates. The enzyme is involved in the tetrahydrofolate metabolism and located to the vacuole. similar to ATGGH2 (GAMMA-GLUTAMYL HYDROLASE 2), gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78680.1); similar to Gamma-glutamyl hydrolase precursor (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GB:P93164); similar to Os05g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056052.1); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.541906938440472 3.83729572427989 0.00453153455957758 1 5.04560905634462 12.9716800182238 0.541906938440472 0.179621452443892
AT1G15280_at 6.2556885541551 6.15742744292261 6.11952414196537 6.2346613575478 6.89239121805184 6.8042999257617 6.41822917270739 6.43093770958812 5.34318499600027 5.80612905253407 5.76565813021818 5.98947472961494 6.19041903146202 6.01566053262623 5.88834665379715 6.39873309761802 5.83499087382617 5.9416414219594 5.82072924296225 0.196645289404466 0.19358380694211 0.200860115872828 0.201376674935699 0.195457836679433 0.199175816271858 0.196258982613124 0.197152522357454 0.205743518743585 0.197178179452390 0.199364483889214 0.198597410851022 0.198764600642506 0.194711645897470 0.194569613893785 0.195096990228756 0.214525207498107 0.201500830295249 0.195598020496000 1 1|0 +|/ 5254260 5255870 5254810.444 5252310 5256748 + gene protein_coding_gene FALSE TRUE AT1G15280.1|AT1G15280.2 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80000.2); similar to Os01g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043467.1); similar to glycine-rich protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52900.1) 0.271791451356553 3.83680225974133 0.00453481142075659 1 5.04495794115104 12.2440432683654 0.271791451356553 0.030387436643664
AT2G34470_at 9.37873295257905 9.56227831926594 9.55923292179466 9.66073060376345 9.66618885102801 9.4972389908297 9.06690950751215 8.82461511413248 8.73831850269451 9.00686601001139 9.1926117192457 9.03479264355548 8.71593084747123 9.29179415943696 8.93715920393369 9.20706107053823 9.3210312732898 8.88528356389668 8.78935340420774 0.133901059586997 0.136272749580750 0.139808937784229 0.141161300073964 0.133901059586997 0.138727061952336 0.133901059586997 0.145153975156819 0.161701190598333 0.133901059586997 0.137052036907869 0.1355330390721 0.139276619489722 0.136565032042007 0.141789756994355 0.134310495580073 0.144405836355948 0.144143189093740 0.143491960139589 2 2|0 -|/ 14538158 14538909 14538467 14537814 14539584 - gene protein_coding_gene FALSE TRUE AT2G34470.1|AT2G34470.2 UREG (urease accessory protein G); metal ion binding / nucleotide binding Encodes a urease accessory protein which is essential for the activation of plant urease. similar to urease accessory protein G [Solanum tuberosum] (GB:CAC33003.1); contains InterPro domain [NiFe]-hydrogenase/urease maturation factor, Ni(2+)-binding GTPase; (InterPro:IPR012202); contains InterPro domain Urease accessory protein UreG; (InterPro:IPR004400); contains InterPro domain Cobalamin (vitamin B12) biosynthesis P47K; (InterPro:IPR003495) 0.308037978173988 3.83550354780087 0.00454344760750598 1 5.043244132462 18.3610179238509 0.308037978173988 0.0626929325935622
AT2G27290_at 9.86595534206942 10.0699932417068 10.1576249189662 10.1311000048070 10.4681797758384 10.2231060099609 10.2732525830372 10.1589101735421 10.2535117567113 10.0845391450715 10.5421889682830 10.5184377781043 10.3773522455751 10.5523131984702 10.3535083647317 10.7618632352214 10.5406864343804 10.6666599262118 9.92427483552546 0.119592347448634 0.111671885911864 0.119395443778533 0.112599483486817 0.114296595044623 0.117734430421906 0.117300343367899 0.114570011947016 0.123015745958402 0.120651858562736 0.111671885911864 0.114704630879656 0.113268692040849 0.114580988088518 0.113123478179497 0.11251183286952 0.115371667478743 0.113792362379851 0.120961336122262 2 2 - 11685708 11686813 11686174.818 11685478 11686875 - gene protein_coding_gene FALSE TRUE AT2G27290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20940.1); similar to Os04g0416000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052762.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL57011.1); similar to OSIGBa0092M08.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67592.1); contains InterPro domain Protein of unknown function DUF1279; (InterPro:IPR009688) 0.302329599370196 3.83183135450295 0.00456796188925420 1 5.03839675283333 20.4817993468952 0.302329599370196 0.0588055873602419
AT1G28440_at 9.1308213985775 9.50076952052399 8.93772199496647 8.96942608886393 9.14463563527566 9.11598802316954 9.36518072611044 9.76694060208731 9.66848459787466 9.43221214159267 9.4736722261728 9.51298255181237 9.36679317824476 9.33170556607668 9.19789972837817 9.22620049465378 8.4138918006646 9.17463488872585 9.5021939935979 0.122352501364944 0.118024607534698 0.120804679932876 0.122642884366668 0.123711440504873 0.119978746207288 0.124308568092739 0.118025240791760 0.119319893388903 0.121183057079509 0.118869348162715 0.120004359812426 0.122179322152544 0.119454184172159 0.122257464342041 0.120066065494818 0.123575700315374 0.127750924582984 0.121848614554406 1 1 + 9999317 10000119 9999765.727 9996810 10000433 + gene protein_coding_gene FALSE TRUE AT1G28440.1 HSL1 (HAESA-LIKE 1); ATP binding / kinase/ protein serine/threonine kinase similar to HAESA (RECEPTOR-LIKE PROTEIN KINASE 5), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G28490.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G09970.1); similar to HSL2 (HAESA-LIKE 2), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65710.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28309.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28308.1); similar to leucine-rich repeat receptor-like protein kinase [Pyrus pyrifolia] (GB:AAT28307.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.360529741468266 -3.83058534114943 0.00457631180575802 1 5.03675149236976 18.6146952313783 -0.360529741468266 0.0948014939564536
AT2G36680_at 6.05643213495795 6.05892953319337 6.17630960302795 6.41760827500206 6.46381956303222 6.32242414172066 5.87384546158525 5.46145396687381 5.64877754620828 5.05329508671076 5.31239903345921 5.38769599384925 5.41801048816779 5.56428116015804 5.47374606890894 5.62846228780856 5.48220288914455 5.57786273861783 5.1159947118313 0.184192606900837 0.189408179416119 0.191005606008278 0.189219739230137 0.184824105029457 0.189317827042659 0.180635718822383 0.198867501059343 0.198245128086884 0.187025149396658 0.184651733738311 0.182591417561710 0.181746919690033 0.186800091579076 0.186275402696637 0.182402164918526 0.196857850065820 0.185595432694458 0.191524262777613 2 2 - 15376404 15377377 15376986.091 15375877 15377925 - gene protein_coding_gene FALSE TRUE AT2G36680.1|AT2G36680.2|AT2G36680.3|AT2G36680.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53120.1); similar to Modifier of rudimentary protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94363.1); contains InterPro domain Modifier of rudimentary, Modr; (InterPro:IPR009851) 0.34513429457031 3.83023207340888 0.00457868211641321 1 5.03628498518527 11.4804886836397 0.34513429457031 0.0862310215530735
AT1G17100_at 9.24385338608407 9.59687339246496 9.12217843559588 9.1037893698893 7.93393937958483 7.95048856140946 9.66587383234103 10.3589782917045 6.93042308496619 9.37886223798147 8.09652369984136 8.53272637343797 9.0823758754106 8.68407255833698 8.48177089550998 9.30771190996412 8.86510494952514 8.30234629716735 8.77243284272242 0.198910328444936 0.196189385702403 0.196850571241271 0.199508401538463 0.193491390604019 0.229931393362865 0.201748866393302 0.200256322760195 0.248934992811285 0.198441701660195 0.207772846741148 0.195098545998006 0.193579647670293 0.216126568073437 0.193151574310917 0.198209479505313 0.215450730442384 0.212154124770122 0.193250701574918 1 1 + 5844889 5845500 5845209.818 5844669 5845654 + gene protein_coding_gene FALSE TRUE AT1G17100.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT1G78450.1); similar to Os01g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042368.1); similar to Os01g0235300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042521.1); similar to novel protein (zgc:56136) [Danio rerio] (GB:CAI11708.1); contains InterPro domain SOUL heme-binding protein; (InterPro:IPR006917) -0.440144720509804 -3.82866826354560 0.00458919047748950 1 5.03421965688833 17.6368227270289 -0.440144720509804 0.134674887470077
AT3G59780_at 10.8067265394366 10.8164088325175 10.2269374277710 10.3438900059561 10.8014570531349 10.3782843590586 11.5882262570303 11.3969012944234 11.6400807538402 11.8565541669319 12.0977282633492 12.0079664561980 11.5661094203133 11.7677492989890 11.9989752944533 12.0513148247280 11.3352143908154 11.7616992849194 11.8652693262295 0.113838326561484 0.116184717143883 0.124153032691565 0.117209958179829 0.118710265767401 0.128801659428354 0.121000406048156 0.113838326561484 0.136048793293009 0.113838326561484 0.115944310004236 0.119246379798707 0.113838326561484 0.118393072074883 0.119437942235863 0.117564283641588 0.117989763861363 0.124326153886385 0.113838326561484 3 3 + 22100516 22101274 22100914.6 22097904 22101421 + gene protein_coding_gene FALSE TRUE AT3G59780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23060.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82172.1); similar to Os01g0896500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045081.1); contains domain Rhodanese/Cell cycle control phosphatase (SSF52821) -0.339190140409159 -3.82813634362365 0.00459277067866239 1 5.03351705889283 22.60017700611 -0.339190140409159 0.0828951750946493
AT1G43710_at 10.0490617677278 10.1903086677560 9.84700576224581 9.93873990598224 10.2086449587332 9.90983085470531 10.7340382584915 10.8530707227519 10.3726979717650 10.6194169517390 10.4730462389542 10.4331402635851 10.5566388233426 10.3481475472755 10.3308281433178 10.5058150786490 9.8987312462849 10.3737054378699 10.5062030298180 0.0878117547381756 0.0889984369665896 0.090813179632004 0.0878892910092958 0.0890842236220942 0.096655105199258 0.0914654267264056 0.0912115702497927 0.088989493183681 0.0878833266602581 0.0892396163786762 0.0878117547381756 0.0878117547381756 0.0925160491547965 0.091683860787833 0.0879744845380891 0.104114081074551 0.0899026936454537 0.0896835402598343 1 0|1 /|- 16488984 16489466 16489235.6 16488760 16490824 - gene protein_coding_gene FALSE TRUE AT1G43710.1 EMB1075 (EMBRYO DEFECTIVE 1075); carboxy-lyase similar to GAD2 (GLUTAMATE DECARBOXYLASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G65960.1); similar to serine decarboxylase [Brassica napus] (GB:BAA78331.1); similar to Os02g0541300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047064.1); similar to putative serine decarboxylase [Beta vulgaris] (GB:BAE07183.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129) -0.307498602064652 -3.82632154009706 0.00460500799778966 1 5.03111959331983 20.6485605698912 -0.307498602064652 0.0628320557534373
AT3G20050_at 8.3432601935382 8.33141339863861 7.9011056233721 7.63104478309943 7.91968730513278 7.84831246851235 8.7253301339484 8.7072901854679 7.23814266944501 7.49610301368344 7.53841766226217 7.97919084469928 7.49115285253071 7.08897294647363 7.91832630563108 7.26164483336607 7.45495348657267 7.31228775307676 7.41004366555642 0.187849545895488 0.191151304362448 0.201820622586366 0.198166598000970 0.193029120144318 0.189444462987184 0.189376153923848 0.194633933688207 0.196311009894376 0.197034778157416 0.200170382358424 0.189565004860003 0.199544629140818 0.190060248258669 0.196260697965366 0.191917272434399 0.202877807775842 0.196451695542686 0.194157046905328 3 0|3 /|- 6998600 6999338 6998973.556 6998244 7002410 - gene protein_coding_gene FALSE TRUE AT3G20050.1 ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit); ATP binding / protein binding / unfolded protein binding Encodes a putative cytoplasmic chaperonin that is similar to mouse Tcp-1 (t complex polypeptide 1). Identical to T-complex protein 1 subunit alpha (TCP-1-alpha) (CCT-alpha) (CCT1) [Arabidopsis Thaliana] (GB:P28769;GB:Q9LJZ6); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G11830.1); similar to Tcp1 protein [Danio rerio] (GB:AAH44397.1); similar to t-complex polypeptide 1 [Bruguiera sexangula] (GB:BAC22124.1); similar to T-complex protein 1, alpha subunit [Medicago truncatula] (GB:ABE87447.1); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, alpha subunit; (InterPro:IPR012715) -0.288798690093759 -3.82598591457179 0.00460727493971789 1 5.03067615354801 15.6194545706995 -0.288798690093759 0.0484840401946844
AT1G13990_at 9.9643923064236 9.76825668095942 10.6713084981415 10.3278164891720 10.4663911195906 9.92924572056804 9.65690877772944 9.21908743776038 8.61613461866741 8.6782794824101 8.72839427795003 6.64618581302542 9.24069500082289 9.13102973536863 7.28664221417893 9.24424910156397 9.57892666391654 9.03976019273926 7.94835059143064 0.162329326206323 0.165944062056259 0.169165499785468 0.166816907371961 0.160919534058200 0.160723527493576 0.162485081999964 0.160604041760012 0.171646742112478 0.165012782788930 0.160239249898817 0.168151060308440 0.165005009056879 0.169593131401833 0.183841191220911 0.155904005634288 0.156990171325683 0.161272068982777 0.181779294908196 1 1|0 +|/ 4795063 4796432 4795693.4 4794753 4796594 + gene protein_coding_gene FALSE TRUE AT1G13990.1 similar to Os03g0168200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049088.1) 0.447129816796400 3.82587899369464 0.00460799737330448 1 5.03053488226903 18.5135460150173 0.447129816796400 0.138082944824055
AT2G23070_at 10.4497323353221 10.4364345069976 10.6267714317659 10.5763408138209 10.8830107570270 10.7082677355473 10.5176338474947 10.4838662145946 10.047285631833 10.2284659413639 10.7010617930563 10.6556901982886 10.5565003845999 10.3922400682878 10.4831384963138 10.6537435226555 10.2887120906287 10.3543179209354 10.3023961486728 0.0762050713554994 0.0774839379694798 0.0773351278307755 0.0835804517392813 0.0759511429343852 0.0787127122832072 0.0780812283330234 0.0761167963762235 0.0914049149601863 0.0792632884528929 0.0803953595208826 0.0780591166135035 0.0782057786923046 0.0841413934524101 0.0799823447049113 0.0759511429343852 0.0898857916859257 0.0809827936499065 0.079817197510376 2 0|2 /|- 9831254 9832139 9831697.333 9831045 9833978 - gene protein_coding_gene FALSE TRUE AT2G23070.1 casein kinase II alpha chain, putative similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to casein kinase II alpha subunit [Sinapis alba] (GB:CAD12663.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.272320305246910 3.82495473390995 0.00461424735945587 1 5.02931360945747 20.9369529386391 0.272320305246910 0.0320947386896414
AT1G33330_at 6.18601260419372 6.5617271394134 6.03828605967569 5.82455323299715 5.85550772559282 5.98440686482362 6.33948101497181 7.19410379018184 6.90505444208864 6.5294498225381 6.44167313438344 6.44518012357579 6.19791032590885 6.69521300474668 5.95026027880061 6.69306821996608 5.63762195869497 6.46173744470136 6.6459079264033 0.233760357961295 0.224453588625598 0.242680931761281 0.243429119568914 0.229946963665530 0.232980117051946 0.231796699282541 0.243160066258771 0.247878137019389 0.227654095238534 0.226799008155329 0.227320239712079 0.225017630804901 0.233767077652970 0.228682587544646 0.224453588625598 0.252295608919732 0.241845953670915 0.232025003919631 1 1|0 +|/ 12085266 12085894 12085583 12084931 12086508 + gene protein_coding_gene FALSE TRUE AT1G33330.1 peptide chain release factor, putative similar to peptide chain release factor, putative [Arabidopsis thaliana] (TAIR:AT1G56350.1); similar to Class I peptide chain release factor; Helix-turn-helix, Fis-type [Medicago truncatula] (GB:ABE88459.1); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352); contains InterPro domain Peptide chain release factor 2; (InterPro:IPR004374) -0.511390167706998 -3.82264671178307 0.0046298939931505 1 5.02626329910236 12.7524116998265 -0.511390167706998 0.167231901467981
AT2G19570_at 5.68558636532036 6.42775570059465 7.6479591584586 7.72706063447783 5.12651597256669 5.73406279340502 5.07332038930532 5.4618506991952 6.2878989625413 5.88326550460532 6.46248247380135 6.35759679244207 5.95019983951397 6.27894671593492 6.07510352681938 7.04252115106567 5.81701983118001 5.97867724886932 6.01710066283158 0.176568511390689 0.1718544966361 0.180934473735171 0.188339884857997 0.180543889172754 0.179528787272526 0.174851170065052 0.186991708302350 0.191643948711058 0.182878450517342 0.180281065809982 0.181067267386462 0.182879740976603 0.184261945774274 0.175611919621499 0.171214025604845 0.183123072290427 0.188108977864818 0.172871887743698 2 2 - 8477738 8478233 8477963.818 8477456 8478726 - gene protein_coding_gene FALSE TRUE AT2G19570.1 CDA1 (CYTIDINE DEAMINASE 1) Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds. similar to cytidine deaminase, putative / cytidine aminohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G29610.1); similar to CMP/dCMP deaminase, zinc-binding [Medicago truncatula] (GB:ABE90597.1); contains InterPro domain Cytidine deaminase, homodimeric; (InterPro:IPR006263); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Cytidine and deoxycytidylate deaminase, zinc-binding region; (InterPro:IPR013171) 0.539667377625209 3.82169855543554 0.00463633812875076 1 5.025009955867 12.2645507095552 0.539667377625209 0.179605506871525
AT1G53030_at 7.4400633002614 7.79925752020967 7.51119117932902 7.72559790172412 7.92678316578171 8.06462052097524 5.65272656604115 6.29606293652422 5.45328660012434 5.4365250362047 5.03027437398876 5.6518484035239 5.46725902050677 5.7505723155475 4.35503386403874 5.69738348765242 6.09748078004747 4.86305642841085 5.5960094938047 0.270340585449150 0.270261060773922 0.265181670005441 0.272936668255774 0.268838619187532 0.273203693950296 0.268633034456126 0.270187117709561 0.275620050276613 0.265577965807628 0.278813655965785 0.265917448374001 0.267458196112839 0.272012999211127 0.277150513271847 0.27061325195175 0.272443797915357 0.267004420523355 0.265071763792337 1 1 - 19763898 19764084 19763987.364 19763669 19765110 - gene protein_coding_gene FALSE TRUE AT1G53030.1 cytochrome c oxidase copper chaperone family protein similar to ATCOX17 (Arabidopsis thaliana cytochrome c oxidase 17) [Arabidopsis thaliana] (TAIR:AT3G15352.1); similar to hypothetical protein DDBDRAFT_0188134 [Dictyostelium discoideum AX4] (GB:XP_636547.1); similar to Os09g0420700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063198.1); similar to Os02g0794600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048378.1); contains InterPro domain Cytochrome C oxidase copper chaperone; (InterPro:IPR007745) 0.439430242681694 3.81783618386968 0.00466268752076706 1 5.01990289491962 12.7317315334854 0.439430242681694 0.134924003027936
AT1G04270_at 9.75899544154231 9.90549256583812 9.43957172836726 9.42015016248678 9.38912626362423 9.53909965936106 9.88857199374055 10.1228358887289 9.55932177469814 9.64428592147651 9.55362190251877 9.93208602170442 9.37165037764817 9.24618974043272 9.91707140455897 9.13244719121889 9.2807850767272 9.40417303361494 9.59193314289004 0.102609032316657 0.103639862837592 0.0999352266184363 0.101701692213501 0.101179636385000 0.0996656519124947 0.107773178602446 0.105713798704991 0.105940169518579 0.101800025800457 0.107501580843796 0.103024855379343 0.101777163198437 0.105238965464306 0.102633342135273 0.107154991501731 0.112288952366767 0.107688668890602 0.099860209784103 1 1|0 -|/ 1141851 1142841 1142250.8 1141603 1143052 - gene protein_coding_gene FALSE TRUE AT1G04270.1|AT1G04270.2 RPS15 (RIBOSOMAL PROTEIN S15); structural constituent of ribosome Encodes cytosolic ribosomal protein S15. Identical to 40S ribosomal protein S15-4 (RPS15D) [Arabidopsis Thaliana] (GB:Q9FY64); Identical to 40S ribosomal protein S15-1 (RPS15A) [Arabidopsis Thaliana] (GB:Q08112); similar to 40S ribosomal protein S15 (RPS15D) [Arabidopsis thaliana] (TAIR:AT5G09510.1); similar to Os03g0798600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051572.1); similar to ribosomal S15 protein [Retama raetam] (GB:AAL32040.1); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222); contains InterPro domain Ribosomal protein S15, eukaryotic and archaeal form; (InterPro:IPR005713) -0.295373769235595 -3.81541324788098 0.00467929829034107 1 5.01669792043901 19.2221138162484 -0.295373769235595 0.0545081525959734
AT4G28540_at 5.31115620928119 5.45389124002703 4.87997721953682 5.21355840428447 5.36710382268962 5.27319202686904 4.48060034844644 4.64191994613894 4.85638066181546 4.05481517673239 4.87750259726206 5.00690804035984 4.6801742250396 4.77899823839639 4.7542399270327 4.54878568179416 4.80538319779321 4.83443403388647 4.1738396691965 0.252943244467562 0.259510046821587 0.260820084084646 0.246571610336523 0.247227800804234 0.259253210082529 0.260836645906313 0.250098110363337 0.275456817257360 0.258664474238352 0.246571610336523 0.253388116586501 0.249106008013893 0.249294725398987 0.258234401917398 0.251024162107510 0.265630942385619 0.250942020092677 0.251927954624395 4 4 + 14109633 14110491 14110152.545 14106979 14110712 + gene protein_coding_gene FALSE TRUE AT4G28540.1 CKL6/PAPK1 (Casein Kinase I-like 6); casein kinase I/ kinase similar to CKL7 (Casein Kinase I-like 7), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G44100.1); similar to ADK1 (DUAL SPECIFICITY KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G03930.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.317845336242843 3.81184387472484 0.00470388343871153 1 5.01197476458256 9.6514157747977 0.317845336242843 0.0706124811702671
AT4G00355_at 9.61597269245848 9.70252050245192 9.92443850072888 9.91114096939642 10.2203312366348 9.85711988140005 9.18629556327329 9.25242467418297 9.48719669000196 9.11463901660424 9.32397918044155 9.09303471421938 9.52198147542702 9.46729216066165 8.93467023603852 9.58605517004485 9.40809251146294 9.36315142080888 9.16571559639491 0.100208059214937 0.101436196555806 0.0995383240633347 0.106138438140100 0.0984639872639278 0.104567270439614 0.100789280635313 0.101392760992707 0.101253075850799 0.106289002102177 0.101135822046080 0.0996678754737702 0.0984639872639278 0.099660708029146 0.102722986357197 0.100508193733400 0.105168338093404 0.0999652822769419 0.102786549751144 4 4 + 155425 156040 155703.818 154705 156376 + gene protein_coding_gene FALSE TRUE AT4G00355.1|AT4G00355.2|AT4G00355.3|AT4G00355.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45980.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80179.1) 0.310192981626384 3.80913321745069 0.00472264573776907 1 5.00838653709739 19.0053467740518 0.310192981626384 0.0656611666175682
AT2G24060_at 8.8787070759837 9.01206433862101 8.42516210875603 8.4207200956171 8.91972510102509 8.70424072415764 9.44993561278121 9.15167869004675 9.20989562008756 9.65148657669567 9.45054423663647 9.9278145329337 9.12318677655567 9.29357600010398 9.79490548384103 9.36699194688183 9.15163375601211 8.81205345958116 9.59632294399234 0.117133773255622 0.119915648593017 0.120220411447109 0.119897257731059 0.126264649007598 0.116409396011894 0.120933657468365 0.120326531360219 0.141350650457549 0.119964160113228 0.117192197041202 0.116869054942523 0.118424337088907 0.119938854097142 0.124585634767307 0.120560680291917 0.124407955602027 0.128602815970295 0.120663952667010 2 0|2 /|+ 10237455 10238445 10238082 10236465 10238643 + gene protein_coding_gene FALSE TRUE AT2G24060.1 translation initiation factor 3 (IF-3) family protein similar to translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] (TAIR:AT4G30690.1); similar to Initiation factor 3 [Medicago truncatula] (GB:ABE79490.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) -0.313223930746408 -3.80872878303121 0.00472545192306493 1 5.00785106697501 18.2957742122036 -0.313223930746408 0.0677337368152553
AT2G44490_at 11.6802837915317 11.9291196267864 12.0219039169866 11.9893336104804 12.1601538689785 12.1777613249279 11.649996699803 11.8184677535567 11.8978406586558 11.7771272563803 12.1891944052047 12.2603148283716 12.1331377338389 12.2363074870928 11.8079522788995 12.0753438472022 11.4901482832045 12.0962756373729 11.6344813970629 0.0753583427872614 0.069679457654071 0.0714001725697086 0.0719423498798914 0.0707043748723966 0.070590874665789 0.0740639838738292 0.0696031733641954 0.074271697076222 0.0720981049452648 0.0696031733641954 0.0696031733641954 0.0708090015520965 0.073532754358301 0.0711059739205128 0.0701592684955325 0.0803370617196456 0.07180998863202 0.0714161089969 2 2|0 +|/ 18373821 18374552 18374228.3 18371832 18374801 + gene protein_coding_gene FALSE TRUE AT2G44490.1 PEN2 (PENETRATION 2); hydrolase, hydrolyzing O-glycosyl compounds Encodes a glycosyl hydrolase that localizes to peroxisomes and acts as a component of an inducible preinvasion resistance mechanism. Required for mlo resistance. similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G60120.1); similar to beta-glucosidase [Brassica napus] (GB:CAA57913.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.292044543852990 3.80670435161655 0.00473952521880366 1 5.00517033178408 23.8313279491388 0.292044543852990 0.0523966017170271
AT2G41180_at 7.66932108584943 7.75665454905479 8.54744198732696 8.603248272742 8.04531411120142 7.83667210902603 7.16788388997406 7.52466879601836 7.1266066274647 6.60126495938723 6.4320525379655 7.46779152302503 6.54201074471505 6.67546972114928 6.03937711320977 6.70256863692551 6.47147157105292 7.12110643559927 6.56940758640709 0.203640141791223 0.197615551337416 0.208824673518985 0.213595383824205 0.203488840142544 0.205956040143427 0.203464785132518 0.211733670941574 0.205699169069749 0.197992408592574 0.216391277123540 0.206285388143223 0.212070696267774 0.221329334093421 0.205282453839945 0.200185549943009 0.208441965397403 0.206165275169348 0.197615551337416 2 2 + 17172322 17172688 17172525.818 17172269 17173103 + gene protein_coding_gene FALSE TRUE AT2G41180.1 sigA-binding protein-related similar to SIB1 (SIGMA FACTOR BINDING PROTEIN 1), binding [Arabidopsis thaliana] (TAIR:AT3G56710.1); similar to VQ [Medicago truncatula] (GB:ABE93011.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.322129175442780 3.80483718205424 0.00475254481118044 1 5.00269726058537 14.6175209800866 0.322129175442780 0.0737400582937348
AT1G08390_at 5.21637356814259 5.16523445877598 4.9351161586534 4.52330543626566 5.29649281412461 5.01869218146475 6.42422161884733 6.21651618229285 6.64504809278035 6.14649861019313 6.47590065414548 6.4146795320518 5.66035032197209 6.7829491267816 6.60523413136848 5.90446087113748 6.04733176344906 6.18384568927279 5.68521214293341 0.187793944094424 0.173994058358618 0.180897968429164 0.178456826228645 0.181312927210038 0.189586403000101 0.183035291283331 0.173994058358618 0.186271925468353 0.189059563674409 0.175724951220162 0.173994058358618 0.186645999930868 0.184507874757549 0.176834436969562 0.176614879273947 0.183448017075457 0.181172798696569 0.186438353688825 1 1|0 +|/ 2642239 2643064 2642594.5 2642211 2643282 + gene protein_coding_gene FALSE TRUE AT1G08390.1 nucleic acid binding similar to hypothetical protein [Ipomoea trifida] (GB:BAF36320.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) -0.355880206708763 -3.80447211587856 0.00475509482673458 1 5.00221366432672 11.5586258656082 -0.355880206708763 0.0935965024470004
AT3G02760_at 7.33646353937397 7.51593920564458 7.19895847663057 6.95466531799501 7.06537209063531 6.74045253339378 7.33688290558714 7.44070972912765 6.85599184432546 7.33266109818431 6.68671776948158 7.41838015208375 6.71276850599314 6.8367842432848 7.17565185197842 6.94969382653496 6.44640288670274 7.05510671013504 7.27195522295626 0.165946844297877 0.165227520918539 0.168015213430406 0.161803602421586 0.164965515420291 0.161115574105427 0.169087270444015 0.167357886112449 0.163812297392977 0.165376894424678 0.165926839614593 0.165837928461426 0.171262451504686 0.168059085279582 0.17081396550335 0.160956065495007 0.187296286106957 0.168448435294842 0.163399324232749 3 3 - 597617 598264 597990.818 597366 599445 - gene protein_coding_gene FALSE TRUE AT3G02760.1 histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative similar to ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1), histidine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G46100.1); similar to Os05g0150900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054669.1); similar to histidyl tRNA Synthetase [Oryza sativa (japonica cultivar-group)] (GB:CAB06653.1); contains InterPro domain Histidyl-tRNA synthetase, class IIa; (InterPro:IPR004516); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.33049227607535 -3.80397261620566 0.0047585862294877 1 5.00155195206416 14.2305426240133 -0.33049227607535 0.07897123332719
AT2G22870_at 6.13246690825413 7.03180919722941 6.04950113545672 6.36891919590186 6.10193741353221 5.35096016683412 7.52771335936904 7.07631964163325 4.20428622247323 4.78097510711079 3.76781984896291 4.64395957159675 4.26904340569482 4.2976571234707 4.84444121994347 5.11807118085327 4.31732505459319 3.84070004873453 5.10787123238635 0.269902864053736 0.271798040522479 0.272526635992067 0.271419346275003 0.267689034134890 0.275387042160035 0.271428470579049 0.276759269258994 0.273475149470216 0.267689034134890 0.267689034134890 0.267689034134890 0.267689034134890 0.268771196022666 0.267689034134890 0.267689034134890 0.288396097735681 0.268676332492875 0.274126838288217 2 2|0 +|/ 9746880 9747959 9747369.8 9746537 9748184 + gene protein_coding_gene FALSE TRUE AT2G22870.1 EMB2001 (EMBRYO DEFECTIVE 2001); GTP binding Identical to GTP-binding protein At2g22870 [Arabidopsis Thaliana] (GB:O81004;GB:Q5XVD7); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT5G11480.1); similar to Putative nucleotide binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19136.1); similar to Os03g0232500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049468.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP-binding; (InterPro:IPR005289) -0.642290735474575 -3.80338053112792 0.00476272831868383 1 5.00076753566021 10.997497395137 -0.642290735474575 0.224208834599548
AT4G05070_at 10.7934937449674 11.0731221060601 10.9036972526534 10.9493335742250 11.6796982123097 11.4135787754333 10.3286086823208 10.4342811819578 10.7499317678873 10.6937379931884 11.0219841328668 10.6245405602017 10.9114641160280 10.8824850226817 10.2916027857300 10.7207070398868 10.8454198489564 10.3771308420790 10.5276682978482 0.0871583934204629 0.0855656448317406 0.0871195720902946 0.0874805364805508 0.0909468533476433 0.0880365047954701 0.0843869150656581 0.0866303395961499 0.104397508496498 0.085234205929159 0.0858972714774824 0.0832956190533674 0.083024949511163 0.0906479953669969 0.0859006950133254 0.083024949511163 0.0869014016396895 0.0871144967145652 0.0859620892547615 4 4 - 2593784 2594016 2593880.273 2593593 2594117 - gene protein_coding_gene FALSE TRUE AT4G05070.1 similar to wound induced protein-like [Vitis vinifera] (GB:AAO12870.1) 0.315752316037325 3.80328776155584 0.0047633776605108 1 5.00064462599656 21.6302414311718 0.315752316037325 0.069709229598448
AT3G13750_at 12.5234868252640 12.6243663981390 12.9914097637179 13.0787735959562 13.5110376457027 13.4141468139661 12.2887075207625 12.223664026409 12.4923704402890 12.6765422820748 12.1509628097547 11.8453636356565 12.5985387099645 12.4296620562530 11.8333992714177 12.381303212858 12.8029289566775 12.5824285385698 12.7001133010004 0.0633199728479131 0.0617446570638693 0.0635910082777023 0.0622405962609206 0.0630225572645546 0.0704622963050149 0.0617446570638693 0.0617446570638693 0.064677829943371 0.0625141069431659 0.0638373239353095 0.0617446570638693 0.0619591472496785 0.0620119167283016 0.0631831057921953 0.0617446570638693 0.0639787839041398 0.0617446570638693 0.0617446570638693 3 3 + 4515024 4515733 4515396.364 4510972 4516305 + gene protein_coding_gene FALSE TRUE AT3G13750.1 BGAL1 (BETA GALACTOSIDASE 1); beta-galactosidase beta-galactosidase, glycosyl hydrolase family 35 similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Lycopersicon esculentum] (GB:AAF70822.1); similar to beta-galactosidase [Fragaria x ananassa] (GB:CAC44500.1); similar to Beta-galactosidase precursor (Lactase) (Acid beta-galactosidase) (Exo-(1-->4)-beta-D-galactanase) (GB:P48980); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) 0.269425243315668 3.80019153976347 0.00478510382560462 1 4.99654167847318 25.3074901104140 0.269425243315668 0.0306788469491636
AT4G24280_at 9.19570244239757 9.34034104074065 9.18040312519704 9.16704025647443 9.20539511665443 8.9163012795665 9.96183018818667 9.69789090158814 9.78729241782006 10.2943104285483 9.71017659446048 9.91211397450053 9.81543536521197 9.75780434478173 10.1933889578118 10.0800714392557 9.59315967897234 9.67517581147401 10.0661965381664 0.0963017069131142 0.0930982632536403 0.0974764585600529 0.099389134471432 0.0955851068437235 0.0984338970832353 0.103274926976134 0.0956182786001634 0.104925710258513 0.0985053986494556 0.100460090516502 0.0955918298180991 0.0930982632536403 0.100469835609124 0.102708634446834 0.0995291815442796 0.102876825687974 0.0981713881658166 0.0956108627288532 4 4 + 12592743 12593409 12593180.182 12589998 12593640 + gene protein_coding_gene FALSE TRUE AT4G24280.1 CPHSC70-1 (chloroplast heat shock protein 70-1); ATP binding / unfolded protein binding similar to MTHSC70-1 (mitochondrial heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G37910.1); similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE79560.1); similar to heat shock protein 70 [Cucumis sativus] (GB:CAA52149.1); similar to heat shock 70 protein [Spinacia oleracea] (GB:AAB91471.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Chaperone DnaK; (InterPro:IPR012725); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.319378444729082 -3.799778752326 0.00478800830691715 1 4.99599455908148 19.2788291600108 -0.319378444729082 0.0722569194801548
AT2G25830_at 7.74913564165122 8.35975601102086 7.61197274205197 7.78666696917558 7.17330946310105 6.97186330822591 8.54961447254428 8.6351241142147 7.74077594010246 8.08964813450378 8.2247865249595 8.58382929562212 7.90307163572949 7.8984370519054 8.90586339811006 8.12173008069068 7.021157286668 7.88226778297651 7.95228969389676 0.187025860810388 0.185986269672421 0.189943604112799 0.187555328742013 0.187258003704624 0.195063212910379 0.190399288204757 0.18038781339231 0.190253073371049 0.190793971586815 0.18909630634676 0.192910559233396 0.180375228188505 0.192536621730813 0.179658048766419 0.189093591685331 0.194715617973446 0.187272864585827 0.184429904668578 2 0|2 /|- 11026174 11027269 11026900.4 11025794 11028777 - gene protein_coding_gene FALSE TRUE AT2G25830.1 YebC-related Identical to UPF0082 protein At2g25830 [Arabidopsis Thaliana] (GB:O82314;GB:Q93ZW2); similar to Os05g0519800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056067.1); similar to hypothetical protein CPn0573 [Chlamydophila pneumoniae CWL029] (GB:NP_224769.1); similar to hypothetical protein TC0742 [Chlamydia muridarum Nigg] (GB:NP_297116.1); contains InterPro domain Protein of unknown function DUF28; (InterPro:IPR002876) -0.398691406652042 -3.79889882783619 0.00479420594975098 1 4.99482819318035 15.8522874093734 -0.398691406652042 0.116252007677984
AT4G26210_at 6.350430133366 6.74947583962936 6.04018974880028 6.28796280750172 5.94316106897618 5.67937705105694 6.59371331708846 6.62801795730513 5.95141072401879 5.68610270429397 5.41669359877318 5.79145393876043 5.3361643452749 5.62055882781891 6.08416374070089 5.65013874567857 5.48964459493992 5.56617944766398 5.57248015275403 0.194325895562799 0.198763977600401 0.189226834332581 0.189792120379714 0.190123208593305 0.204170403085416 0.185547811123832 0.195890994808493 0.187877346138124 0.192345851737633 0.189554941793567 0.187941122266338 0.188032249680824 0.185446137795681 0.191376457884575 0.187447742174766 0.193935743024852 0.185446137795681 0.189601501191265 4 4 + 13282402 13283089 13282767.818 13281946 13283411 + gene protein_coding_gene FALSE TRUE AT4G26210.1|AT4G26210.2 mitochondrial ATP synthase g subunit family protein similar to mitochondrial ATP synthase g subunit family protein [Arabidopsis thaliana] (TAIR:AT4G29480.1); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 complex, subunit G, mitochondrial; (InterPro:IPR006808) -0.355013257417183 -3.7987047573642 0.00479557401025324 1 4.99457093042079 11.9620605814523 -0.355013257417183 0.0934155071481752
AT1G75990_at 6.91564572779014 7.0015303600308 6.24833014915488 6.44776022514725 6.32718669961896 6.17794487346935 6.40251611980694 6.29083672426592 6.78630555882651 5.86175534505501 5.93203058205058 6.50704904630614 5.67414591194428 6.56212361635874 6.35468161684124 5.84335256771393 5.59380805848888 6.03490952378643 6.20962051281497 0.188551844066646 0.194383032237504 0.194928511818422 0.194526386469844 0.187027664634542 0.194145786945746 0.192219537313846 0.187325456225603 0.207700743294383 0.187738369727972 0.187885291054279 0.191963098232194 0.183801295200915 0.189184723053573 0.190155194139568 0.183622600225232 0.205107008323174 0.188745880895081 0.192021226422832 1 1 - 28528390 28528923 28528606.545 28528160 28530437 - gene protein_coding_gene FALSE TRUE AT1G75990.1 26S proteasome regulatory subunit S3, putative (RPN3) Identical to Probable 26S proteasome non-ATPase regulatory subunit 3b (26S proteasome subunit S3-b) [Arabidopsis Thaliana] (GB:Q9LQR8); similar to EMB2719 (EMBRYO DEFECTIVE 2719), binding [Arabidopsis thaliana] (TAIR:AT1G20200.1); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:P93768); similar to nuclear antigen 21D7 - carrot (GB:JQ2257); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:Q06364); contains InterPro domain 26S proteasome regulatory subunit, C-terminal; (InterPro:IPR013586); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) -0.287728968127528 -3.79569231000463 0.0048168629859306 1 4.99057681482261 12.6507970704114 -0.287728968127528 0.0495232546452455
AT2G29290_at 10.0013402781843 10.0109864671014 9.72021134591449 9.72784033601424 10.3574610741309 10.0358375506040 10.9363361514379 10.9019810163970 10.6246430154120 11.3579860698654 10.8351483054774 11.0724711794594 11.2260638700393 10.8145867269595 10.8311881403518 11.3105086130754 11.2113046838331 11.0388325684650 11.4121047889020 0.0897670486593672 0.0867782699612299 0.0955308145291608 0.0943422074180542 0.0851325861818782 0.0922486321005578 0.0864059016083423 0.086888557281166 0.0977799554998937 0.085917911415006 0.090655116235451 0.0849959577821127 0.0882557613704555 0.0926606651830006 0.0927255145381356 0.0849959577821127 0.0905362537506362 0.09041085810323 0.0849959577821127 2 2|0 +|/ 12593858 12594606 12594237.5 12593575 12594804 + gene protein_coding_gene FALSE TRUE AT2G29290.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to SAG13 (Senescence-associated gene 13), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G29350.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.295694174358216 -3.79451788122439 0.0048251898948094 1 4.98901928252653 21.2985447619817 -0.295694174358216 0.0560155296398938
AT4G30630_at 5.81239487375662 5.42781954136625 6.36128610189634 6.04116287839242 7.06087991713558 6.58037390341312 6.45757937205015 5.74487042681807 5.32316622907189 5.80402798642152 6.45248789796423 5.96290214750301 6.0531654805026 6.26323059238818 5.42530539827839 6.27078669450292 5.73689965072913 5.93563712399821 5.75044768986451 0.229085071998357 0.226685203738138 0.23344932718177 0.231553827379258 0.227366014736623 0.238131004777090 0.223490493774141 0.224862948774733 0.247821729997439 0.226587268304359 0.217656516846492 0.223319752445269 0.222115848066544 0.229528106301135 0.217209180309158 0.217208891223824 0.235863590698996 0.238235039725235 0.224991873625064 4 4 + 14951556 14952071 14951784.545 14950644 14952382 + gene protein_coding_gene FALSE TRUE AT4G30630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57910.1); similar to tRNA-binding arm [Medicago truncatula] (GB:ABE78788.1) 0.518465442412811 3.79274714823434 0.00483777366599208 1 4.98667051407009 12.0050121310299 0.518465442412811 0.172119122425899
AT3G45260_at 6.7648178820908 6.49151060814099 6.60450427078281 6.46074665340332 6.78212402541104 6.23683542989930 5.57806545823094 5.61426056502429 6.44914975778472 6.19790269455757 7.02027337002044 7.08653950473607 6.95754339966523 7.00133683542036 5.72995712497141 5.91522035523294 6.09164400790552 6.28918683400228 5.8159906439246 0.273106563237252 0.274710697117982 0.289078043695106 0.281912662321166 0.278406402751636 0.270025709699542 0.281277565245933 0.276292251111116 0.276656331102676 0.269203584454961 0.269203584454961 0.277420146404221 0.269203584454961 0.269601638900020 0.293726825785964 0.271304006761109 0.297550353098308 0.278017990495054 0.274635435832793 3 3 - 16607903 16608322 16608117.091 16607366 16609683 - gene protein_coding_gene FALSE TRUE AT3G45260.1 zinc finger (C2H2 type) family protein similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G60470.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE79766.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.383001973370506 3.79270194213306 0.00483809538120802 1 4.98661054442463 12.6495133004979 0.383001973370506 0.108627179830971
AT4G00990_at 6.27064365919086 6.21178088061152 5.9382061151043 5.94450902509018 6.55230428102678 6.41494759827231 6.50589200116916 6.23564660075635 5.6997488161836 6.36783695701999 5.8800294909715 5.96412475547381 5.72305632675759 5.20816816001914 5.71705260759868 5.92479453852635 5.19735407796651 5.64261123404416 6.37702407094954 0.172544098014235 0.177116496620673 0.171190508967598 0.173539017062703 0.174889037890269 0.185338218399885 0.171912870857673 0.176164676074859 0.185099309266427 0.173722811238422 0.175027079381029 0.177269682788279 0.181054137085516 0.188250661313830 0.178944527839483 0.173282295787722 0.183347016075963 0.176554525212414 0.173384157038712 4 4|0 +|/ 430492 431503 430961 426944 431821 + gene protein_coding_gene FALSE TRUE AT4G00990.1 transcription factor jumonji (jmjC) domain-containing protein similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to chloroplast DNA-binding protein PD3 [Pisum sativum] (GB:CAA67296.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96755.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96756.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347) -0.292276706511617 -3.79262304092974 0.00483865694660801 1 4.98650587465074 12.1619173603047 -0.292276706511617 0.0534523216130457
AT3G44340_at 8.3839630282041 8.4722655759196 8.59758804557283 8.67786002384589 8.42603363698345 8.185894735118 8.37172616466323 8.10495717264757 7.68272435046842 7.52609570350494 8.0010042687762 8.27140406945335 7.81285946697427 7.85666071101616 8.34265821616115 7.80576362826113 7.96534732254064 8.06647638167596 7.4017870362128 0.176733626867023 0.174559289323872 0.180362634308844 0.171048555498804 0.178230962331182 0.192927499635527 0.174036119650514 0.174065446995677 0.184855563377112 0.174577082809529 0.176595233228253 0.172083556924437 0.172175004280881 0.181655742415875 0.177403031487105 0.173871611293672 0.180370721924478 0.174519556601591 0.185365881362848 3 0|3 /|- 16022921 16024016 16023558 16022608 16031241 - gene protein_coding_gene FALSE TRUE AT3G44340.1|AT3G44340.2 CEF (CLONE EIGHTY-FOUR); transporter homologous to yeast and animal Sec24 proteins; expression in yeast cells enhances their survival under oxidative stress conditions. Identical to Protein transport protein Sec24-like CEF (CEF) [Arabidopsis Thaliana] (GB:Q9M291); similar to sec23/sec24 transport protein-related [Arabidopsis thaliana] (TAIR:AT4G32640.1); similar to Protein transport protein Sec24-like CEF, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93724.1); similar to retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97661.1); similar to Vesicle coat complex COPII, subunit SEC24/subunit SFB2 (ISS) [Ostreococcus tauri] (GB:CAL55868.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.308509426533362 3.79208859124967 0.0048424626237586 1 4.98579685144293 16.1786064419540 0.308509426533362 0.0654579849695644
AT4G29050_at 6.00450128350753 5.89888860481468 5.70102874013926 5.84791850182623 5.76688472404913 5.62565348679348 2.98313555149638 3.20701951124788 5.35256069775809 4.36630623166090 3.93756675859962 4.4197047287687 4.57073836228418 4.40641478712512 4.02036407407222 4.16875634242212 3.81892115080433 3.99664363792012 4.65094965252425 0.256369790573718 0.255914057033025 0.254395072810169 0.272139655355188 0.257849544474394 0.263975166393122 0.251094339126255 0.246298397198825 0.246831659845435 0.251552564598865 0.249890121577133 0.246087848454013 0.249091796064138 0.250448611321941 0.252658918927697 0.248215832996050 0.249126721696522 0.248264198790404 0.246087848454013 4 4 - 14314879 14315398 14315125.727 14314824 14316885 - gene protein_coding_gene FALSE TRUE AT4G29050.1 lectin protein kinase family protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70110.1); similar to ATHLECRK (ARABIDOPSIS THALIANA LECTIN-RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT3G59700.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70130.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC57697.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.294717497518602 3.79077453297708 0.00485183323439794 1 4.98405337385235 9.60804259593297 0.294717497518602 0.0554857970917194
AT2G24820_at 10.1455629697171 10.2761252121461 10.1596348590859 10.2239928774167 10.3696512048792 10.1236659627997 10.7806844922243 10.8846469222277 10.5173245995393 10.8333474163476 10.3144874008425 9.99616477482555 10.4040314967015 10.4802246425991 9.93776785976578 10.5886155949938 10.4136111226419 10.5495730320816 10.4951384167607 0.0926371432352161 0.0862843294139404 0.0944894780688684 0.0884833884731375 0.0870937503899418 0.0919564164626725 0.0933775764562892 0.0891901145774997 0.0950010827151891 0.0862843294139404 0.0905021917648966 0.0865567659785319 0.0865617782459333 0.0887408092419138 0.0954932409508899 0.0868259646776117 0.100243728588628 0.0862843294139404 0.0862843294139404 2 2 + 10583324 10583831 10583613.909 10582058 10584017 + gene protein_coding_gene FALSE TRUE AT2G24820.1 TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55); oxidoreductase similar to ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) [Arabidopsis thaliana] (TAIR:AT3G44880.1); similar to Rieske iron-sulfur protein Tic55 [Pisum sativum] (GB:CAA04157.1); similar to Os02g0792800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048363.1); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.291114663346434 -3.79076083326298 0.00485193102921944 1 4.98403519578121 20.8459103799483 -0.291114663346434 0.0526340517802671
AT3G07370_at 5.42551749532796 5.7221668731619 6.33633555045437 6.28174819088084 5.58202027497593 5.96273041798436 5.15144923691735 5.15497286236147 5.07875003813003 4.87180904205969 4.95440791394562 5.01084541968736 4.60343290326647 5.01215043935441 4.79042498967524 5.24113354513018 5.48351674342713 4.7015457827118 4.97850602752805 0.218676596105202 0.217583090378337 0.221870885698472 0.220700500226522 0.218195584238805 0.218548448214176 0.222905894301238 0.217583090378337 0.235370216400229 0.217583090378337 0.219802077393182 0.219163028080608 0.218473945738814 0.232205510534270 0.236251275624227 0.229085766370192 0.218230056347993 0.227048558203170 0.230842483191021 3 3|0 -|/ 2358335 2359089 2358646.5 2358089 2360555 - gene protein_coding_gene FALSE TRUE AT3G07370.1 ATCHIP/CHIP (CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN); ubiquitin-protein ligase Encodes AtCHIP, a new class of E3 ubiquitin ligases with three tetratricopeptide repeats and a U-box domain, structurally similar to the animal CHIP proteins. Plays an important role in plant cellular metabolism under temperature stress conditions. Functions as an E3 ubiquitin ligase of protein phosphatase 2A subunits and alters plant response to abscisic acid treatment. similar to PAPP5/PP5 (PROTEIN PHOSPHATASE 5), phosphoprotein phosphatase/ protein binding [Arabidopsis thaliana] (TAIR:AT2G42810.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09517.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain U box; (InterPro:IPR003613) 0.337754586437778 3.78968948406177 0.00485958530609428 1 4.98261353635475 10.6776362392859 0.337754586437778 0.0840577758025512
AT1G11330_at 6.98870008611203 7.18953995040993 7.2491827534046 7.22644785174687 4.78017686044328 5.25447713141443 4.42521265178793 4.62357665749501 7.5099200051085 5.01036659047043 6.97709277962607 7.79498107415248 5.9711737000393 6.94010978478947 6.51936000813354 6.72989302606486 5.6018425052096 7.07086901726669 6.39674901335568 0.230446685826422 0.240093910706935 0.244191828779227 0.244061757527054 0.247201698256969 0.240743475995022 0.243901661964988 0.245418702267479 0.233308689108777 0.236200667907875 0.241486273698136 0.241770917521481 0.230276971596025 0.232077305364291 0.229552273754173 0.241749695446954 0.241016539432475 0.238595237521430 0.232591840058713 1 1|0 +|/ 3812927 3813388 3813167.2 3810221 3813607 + gene protein_coding_gene FALSE TRUE AT1G11330.1 S-locus lectin protein kinase family protein similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT1G11300.1); similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11350.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.357900256699889 3.78723935084107 0.0048771386463019 1 4.97936157207595 12.4703361294627 0.357900256699889 0.0955980266349225
AT4G40045_at 6.96710443561463 7.25497949116748 7.3408964724869 7.34047428344016 8.13941024993945 7.42736687299617 8.33389404721084 7.9862201233959 6.51412601657008 7.50468244998937 8.45230210333906 8.11127554442244 8.0821936443709 8.25065245775503 8.45568779313177 8.64559244124879 7.79377180269449 7.68398650384463 7.55808819724143 0.203255942608734 0.209962708806359 0.214962603977993 0.207095210429889 0.204474059843286 0.21443221298127 0.201380647661937 0.209450819056107 0.234456457445154 0.213417744914602 0.207229644567563 0.209062918490334 0.199700312203693 0.217653433944283 0.200307961618697 0.201560498252916 0.205282951466854 0.220332074021782 0.200919800025356 4 4 - 18559945 18560313 18560143.727 18559778 18560651 - gene protein_coding_gene FALSE TRUE AT4G40045.1 similar to Os12g0206700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066383.1) 0.459310671892859 3.78637456569197 0.00488335026394624 1 4.97821354955937 15.2871590841737 0.459310671892859 0.145895977040118
AT1G12640_at 7.59550792474078 8.27446819112983 8.18694241615062 8.26082928483672 8.3188428917259 8.0461948623342 7.12679543975878 8.14141620690118 7.07070963907397 6.26455684679784 7.51498857317047 7.29900126077049 8.15229302438176 7.6191813482904 6.87053313242759 7.67128446637224 7.09860879333051 6.71409171987623 6.29239658972249 0.228195995487012 0.220365343290459 0.228009909776975 0.219325998265110 0.227745846258221 0.230307879336774 0.219220626224760 0.219220626224760 0.235851523639886 0.224749693728869 0.224353802360621 0.221280102333601 0.226605806754841 0.237063817495813 0.239571130353606 0.2244576423563 0.231271282219828 0.227469509986123 0.219220626224760 1 1|0 -|/ 4303625 4304395 4303928.625 4303310 4305796 - gene protein_coding_gene FALSE TRUE AT1G12640.1 membrane bound O-acyl transferase (MBOAT) family protein similar to membrane bound O-acyl transferase (MBOAT) family protein [Arabidopsis thaliana] (TAIR:AT1G63050.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL58542.1); similar to Os02g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047723.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) 0.621799427212623 3.78602323069777 0.00488587625167064 1 4.97774711022512 14.9489007263767 0.621799427212623 0.216853345821524
AT2G28430_at 8.13101051503625 8.62429553702881 8.35106468263366 8.32379211990185 8.84016490024333 8.0381437375462 8.22432636700701 8.00186282920656 7.16782122638837 8.01733836392472 8.86535574302567 9.05267867050129 8.62133814544717 8.5783067234039 8.93916201115804 8.78862949384779 8.01918764849314 7.83678000336592 7.96428302203543 0.173367327808947 0.171318745433410 0.170140421272871 0.169342593417129 0.171542322437456 0.185856456591824 0.168249713632245 0.172816999616353 0.175280180737317 0.177281269688199 0.168225925219545 0.167521972197180 0.169104726560541 0.180312043618605 0.171110795203634 0.168982846941429 0.173889918514586 0.180589244695033 0.169283599586368 2 0|2 /|- 12166827 12167338 12167118.4 12166639 12167528 - gene protein_coding_gene FALSE TRUE AT2G28430.1 similar to unknown [Hyacinthus orientalis] (GB:AAT08697.1) 0.507058241067063 3.78579754644440 0.00488749958317865 1 4.97744747698291 16.4689129239196 0.507058241067063 0.167497058289206
AT1G74960_at 9.83318699194374 9.70864281219206 9.77975993882234 9.55318532896253 10.0681285574583 9.8818389094717 10.5671418920715 10.3467684790813 10.6363059174965 10.4047818151875 10.4049632459618 10.1359629761783 10.1688281978640 10.1763338690810 10.0603901639119 10.1416100085291 9.90349474432105 10.0135247669492 10.3175667455487 0.0798124817080857 0.0758773424144859 0.0786565961523136 0.081998442937727 0.0742429494600789 0.0792402095580187 0.0793829264624975 0.0789887493524361 0.0854650012971767 0.0793488685125287 0.0742429494600789 0.0744143695568843 0.0750965662019858 0.0777563994869612 0.0744137215605064 0.0742429494600789 0.0834424540884111 0.0863682002977087 0.0761405547559446 1 0|1 /|- 28156233 28157099 28156676.556 28155639 28159888 - gene protein_coding_gene FALSE TRUE AT1G74960.1|AT1G74960.2 FAB1 (FATTY ACID BIOSYNTHESIS 1); fatty-acid synthase Encodes a nuclear encoded beta-ketoacyl-ACP synthetase involved in fatty acid desaturation and required for cold-tolerance at 2 degrees Celsius. similar to KAS I (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE I), fatty-acid synthase [Arabidopsis thaliana] (TAIR:AT5G46290.1); similar to 3-ketoacyl-ACP synthase [Cuphea pulcherrima] (GB:AAC68860.1); similar to beta-ketoacyl-ACP synthase II [Cuphea wrightii] (GB:AAB37271.1); similar to beta-ketoacyl-ACP synthetase 2 [Brassica napus] (GB:AAF61739.1); contains InterPro domain Beta-ketoacyl synthase; (InterPro:IPR000794) -0.310226594810734 -3.78458865411433 0.00489620483416202 1 4.97584233451538 20.256593275089 -0.310226594810734 0.0670496002931243
AT2G42400_at 5.61733664936114 5.48156547151531 5.04300578640774 5.81591002905497 5.28358080816284 5.80130222216328 4.49846604530304 4.91868451300044 4.41621829078536 4.31759059849411 5.04031857727571 5.43981214173752 5.55163210415296 5.61914707992536 4.89002057993387 5.2480014742208 5.42016299675855 4.27646179810687 4.70773932999106 0.274895928078425 0.27268589000432 0.290079243862173 0.270083883765402 0.279343254160812 0.297203666909273 0.278836816975469 0.269501981768989 0.312341043099197 0.274200374755966 0.271218900073088 0.273626414276571 0.271900914339402 0.275579698948501 0.28195115969352 0.271160426232608 0.279451551060491 0.283192044466856 0.269550766503007 2 2|0 -|/ 17661595 17662258 17661931.222 17661310 17663916 - gene protein_coding_gene FALSE TRUE AT2G42400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G28520.2); similar to putative vascular plant one zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87186.1); contains InterPro domain Colicin E3, catalytic; (InterPro:IPR009105) 0.531057531288001 3.78340046850769 0.00490477704495136 1 4.97426446012392 10.1405867741732 0.531057531288001 0.178207135651269
AT2G23670_at 8.8765134524205 9.29769017406048 8.04085268362704 8.53999741652776 8.6654948325136 8.6613561569052 10.0437489478698 10.1266024827926 9.42739474587812 9.73002898154544 9.85173677505335 10.2501684886240 9.58789722131248 9.83461741143328 10.0865148759296 9.82319293252204 9.83596648288406 9.3821053408439 9.36200369305167 0.152419065155291 0.153180534493752 0.179980988638416 0.167856812685385 0.152246572556449 0.157135485794768 0.158281199984682 0.151516564535650 0.165900406886242 0.156963096833367 0.152373881920161 0.149256361826021 0.1639123436527 0.151605185540162 0.155136024884310 0.152955527098929 0.156400797065612 0.161939728057023 0.158567932498311 2 2 - 10070435 10070857 10070681.091 10070235 10070943 - gene protein_coding_gene FALSE TRUE AT2G23670.1 YCF37 (Arabidopsis homolog of Synechocystis YCF37) similar to Os02g0815300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048501.1) -0.392082178821082 -3.77986321962047 0.0049303912738891 1 4.969565776349 18.7005323922898 -0.392082178821082 0.113929540307173
AT1G04420_at 9.11736720881548 8.85835389765663 8.45672338808147 8.35740328502007 8.86467505304484 8.65899724808724 9.66129102718135 9.45664086640834 9.49350386703194 9.57368811854007 9.49597976522132 9.67289154668431 9.18232801438288 9.63314834651508 9.85976367174042 9.63211773510342 9.34341295349227 9.55290597767315 9.38602382822515 0.113908611530571 0.111508350891891 0.116542660363791 0.125170427353528 0.108401965908792 0.119286552739562 0.110263361838007 0.109376858681605 0.118834027078994 0.112358610652891 0.111428123545166 0.107149130293196 0.116597098265276 0.110476180741946 0.108777275229866 0.107149130293196 0.111824070016609 0.113485386890115 0.113845913180132 1 1|0 +|/ 1192801 1193646 1193410 1191607 1193883 + gene protein_coding_gene FALSE TRUE AT1G04420.1 aldo/keto reductase family protein similar to KAB1 (POTASSIUM CHANNEL BETA SUBUNIT), potassium channel [Arabidopsis thaliana] (TAIR:AT1G04690.1); similar to Aldo/keto reductase [Medicago truncatula] (GB:ABE91742.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.313400138185580 -3.77935105978841 0.00493411174195014 1 4.96888528758538 18.4444183830956 -0.313400138185580 0.0694674758812776
AT1G69040_at 8.70852072363549 8.87337143981776 6.61818422135171 6.24491886142494 8.25406456962294 7.68477887593343 7.57246807904955 7.10748082856412 8.40694833102629 7.6812981535279 8.24211057281969 9.04074560817346 8.20240190911664 8.07752775284041 8.99320178437018 7.87394888328397 6.27064142830474 7.93194722713875 8.29459471397233 0.193564414518389 0.192260568854981 0.194979753012134 0.209572971092678 0.190397177647207 0.205987181196777 0.197441097443909 0.194745964085008 0.206651644338374 0.203039929591877 0.192459786797084 0.190397177647207 0.190397177647207 0.190397177647207 0.191523791797560 0.190397177647207 0.218371668849408 0.196796734292079 0.197959192205523 1 1|0 +|/ 25962985 25963706 25963455.1 25961482 25963970 + gene protein_coding_gene FALSE TRUE AT1G69040.1|AT1G69040.2 ACR4 (ACT REPEAT 4); amino acid binding ACT-domain containing protein involved in feedback regulation of amino acid metabolism similar to ACR5 (ACT Domain Repeat 5) [Arabidopsis thaliana] (TAIR:AT2G03730.2); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os03g0413100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050359.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.456760861384832 -3.77258888907052 0.00498351485952181 1 4.95989673828122 15.7363131392241 -0.456760861384832 0.145489694961507
AT4G05050_at 12.5479025501570 12.6734743287569 13.1052510778113 13.0274209530229 12.8181046865844 12.7353882137752 12.8167551689738 12.9900047830635 12.8637092263879 12.7439759758575 13.2018942538385 12.9687438327508 13.0653514372225 12.9933873072386 12.8573317333112 13.2206335245242 13.1440943526732 13.1703661179963 12.4535586870394 0.0560793012761346 0.0560793012761346 0.0570920019988031 0.0580904141889313 0.0560793012761346 0.0584524941600435 0.0574021239285593 0.0560793012761346 0.0560793012761346 0.0571437579876806 0.0560793012761346 0.0567566401435699 0.058176178881144 0.057690294908335 0.0592326496177272 0.0560793012761346 0.0580798341017697 0.0581879425882845 0.0586224959892791 4 4 - 2588512 2588569 2588544.273 2588002 2589384 - gene protein_coding_gene FALSE TRUE AT4G05050.1|AT4G05050.2 UBQ11 (UBIQUITIN 11); protein binding polyubiquitin gene, belongs to a subtype group with UBQ10 and UBQ14. Various ecotypes of Arabidopsis have different numbers of ubiquitin repeats within this gene. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ14 (ubiquitin 14), protein binding [Arabidopsis thaliana] (TAIR:AT4G02890.3); similar to ubiquitin [Antirrhinum majus] (GB:CAA48140.1); similar to ubiquitin-like protein [Phaseolus vulgaris] (GB:AAB36545.1); similar to pentameric polyubiquitin (GB:AAA34124.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.277575524288383 3.77201117654885 0.00498775983194855 1 4.9591284844872 25.7216910284545 0.277575524288383 0.0419218426111104
AT2G30250_at 7.84487843003016 8.0263192821227 7.39516966632128 7.9083441345611 8.24636790387385 7.432874157491 4.888963468881 4.70600991700107 6.53754802225693 5.57281932587936 5.94797412602092 5.47736246977693 5.25920463107372 6.3751311729882 4.69321314352459 5.2850466498499 5.15987606078302 5.19911752543347 5.20742907040224 0.261889082160989 0.259595289876806 0.279809431832541 0.260091421861176 0.264713246158749 0.26505606001868 0.261970481252586 0.265122304168662 0.269839180361924 0.25605427758645 0.267262491430405 0.25605427758645 0.261445887292976 0.264517886692207 0.270001971671128 0.25605427758645 0.268854682538267 0.26422007853924 0.257690501393860 2 2 - 12910648 12911341 12911095 12910313 12912275 - gene protein_coding_gene FALSE TRUE AT2G30250.1 WRKY25 (WRKY DNA-binding protein 25); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 25 (WRKY DNA-binding protein 25) (WRKY25) [Arabidopsis Thaliana] (GB:O22921;GB:Q94AT4); similar to WRKY26 (WRKY DNA-binding protein 26), transcription factor [Arabidopsis thaliana] (TAIR:AT5G07100.1); similar to SPF1 protein [Ipomoea batatas] (GB:BAA06278.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.515581553652451 3.76835055791367 0.00501474718668187 1 4.95425929547571 12.6547231343407 0.515581553652451 0.172318732468927
AT2G32920_at 8.11798352565112 8.05519559340702 8.48960832176516 8.37173472159602 8.16737515828157 7.60930815327704 8.0696720584366 7.50597640906927 5.93633675720713 5.96022795508662 6.30251971746781 7.2193547017477 6.31178789873679 6.11569310667062 7.48442712742307 6.10388123734606 6.65371997711517 6.67804449186746 5.94042648009907 0.23464431535136 0.242161757619337 0.249029814330841 0.236978492216180 0.236765635511743 0.23464431535136 0.238274928734413 0.240699960931118 0.273433473408259 0.240960697458609 0.258894823972530 0.242818712462092 0.248195249688351 0.243566645248882 0.244409811756299 0.23578523947248 0.271198798408016 0.249706235941536 0.239145024440627 2 2|0 -|/ 13969850 13970552 13970259.556 13969395 13972534 - gene protein_coding_gene FALSE TRUE AT2G32920.1 ATPDIL2-3 (PDI-LIKE 2-3); protein disulfide isomerase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL2-2 (PDI-LIKE 2-2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G04980.1); similar to Os09g0451500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063331.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09966.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) 0.442657246794085 3.76728827501058 0.0050226077326545 1 4.95284589925199 14.3255278742327 0.442657246794085 0.139201806519377
AT2G16400_at 7.58362964855655 7.86183394227066 7.60124671700827 7.5550290580512 8.11251182278672 7.8561482403421 8.333790675811 8.43566663521337 7.75654599488754 8.08145515967854 8.05268861715115 7.6106550455597 7.87992757615863 7.84693293868291 6.9253584982527 7.65731888294481 7.21524461560945 7.2283574309766 7.86416435623674 0.175602776043456 0.175025801608710 0.174539746570412 0.180541022012502 0.17450961915125 0.171293798498509 0.182775969008249 0.178227631757204 0.18678990521288 0.172677844229539 0.174579772375667 0.175648957281648 0.176491039723861 0.186303220252930 0.187362321261355 0.178657256731813 0.179314357194882 0.191666080741563 0.179682091729243 2 2|0 -|/ 7108594 7109296 7108894.5 7108412 7111003 - gene protein_coding_gene FALSE TRUE AT2G16400.1 BLH7 (BELL1-LIKE HOMEODOMAIN 7); DNA binding / transcription factor similar to BLH6 (BELL1-LIKE HOMEODOMAIN 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G34610.1); similar to benzothiadiazole-induced homeodomain protein 1; BTH-induced homeodomain protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAS18416.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) -0.310578826091552 -3.7668857593359 0.00502558963772203 1 4.95231029475929 15.6438732363056 -0.310578826091552 0.0682710405850843
AT1G61150_at 7.7107027118806 7.96721826032222 8.00002507171538 8.08228399033638 8.5511281498029 8.09788412312703 7.77805403025474 7.58749616591364 7.2507515200797 7.10482811889828 7.01082015209516 7.10500679573398 7.35643340363566 7.53841025111335 6.863159388144 7.34716505108091 7.40972835869688 6.92513736885336 6.34241480811397 0.212595784544182 0.199752511649315 0.201513783648643 0.199088877255003 0.199097855830909 0.200892360321863 0.201203632100134 0.204604867264030 0.206427490404855 0.196591103644781 0.200167201647372 0.202851933344556 0.199067405854923 0.198042539425622 0.195289712544472 0.201761758477530 0.202082012656369 0.201466575305506 0.210213787820757 1 1 + 22547035 22547990 22547550.636 22546189 22548309 + gene protein_coding_gene FALSE TRUE AT1G61150.1|AT1G61150.2|AT1G61150.3|AT1G61150.4|AT1G61150.5|AT1G61150.6|AT1G61150.7 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09300.1); similar to pg4 [Hordeum vulgare] (GB:AAV65331.1); similar to Os03g0235100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049484.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09300.1); similar to pg4 [Hordeum vulgare] (GB:AAV65331.1); similar to Os03g0235100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049484.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09300.1); similar to pg4 [Hordeum vulgare] (GB:AAV65331.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144) 0.358556827728899 3.76677562584235 0.00502640585335634 1 4.95216374199542 15.0187561021857 0.358556827728899 0.0970201311013023
AT1G04970_at 8.64545707365803 8.90810696322144 9.37622565698542 9.44602441027581 9.60910520893096 9.24534291997361 8.67056514137586 8.44712613630355 8.34482885925442 8.34748142617626 8.2535970348318 8.14019608607325 8.40695239231222 7.69457764316338 7.78859782096835 8.64586792307239 8.21538254199951 8.50469967265794 8.13319709222148 0.177747072603413 0.176117010583290 0.191256080984205 0.177131908171014 0.174305331395087 0.177884877520228 0.188133410049971 0.177617283616923 0.186180586581016 0.186802166863463 0.179951105108280 0.175263693855539 0.184491784179237 0.200788302470341 0.194215304810394 0.174305331395087 0.183535100845933 0.204693020160188 0.192311679798066 1 1 + 1412720 1413404 1413093.545 1411169 1413626 + gene protein_coding_gene FALSE TRUE AT1G04970.1|AT1G04970.2 lipid-binding serum glycoprotein family protein similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G20270.2); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to LBP (LPS binding protein)/BPI (bactericidal/permeability-increasing protein) like-2 [Oncorhynchus mykiss] (GB:BAB91244.1); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124)|similar to lipid-binding serum glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G20270.2); similar to Os06g0309200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057479.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant a [Gadus morhua] (GB:AAM52335.1); similar to bactericidal permeability increasing protein/lipopolysaccharide binding protein variant b [Gadus morhua] (GB:AAM52336.1); contains InterPro domain Lipid-binding serum glycoprotein; (InterPro:IPR001124) 0.341212741951268 3.76098798467273 0.00506949781089034 1 4.94445953902226 17.2841956964750 0.341212741951268 0.0875774278926054
AT4G12040_at 8.76516619056596 8.87231503379944 9.00748144424523 9.07016339159129 9.37963655213266 9.41001407400457 8.7054151507237 8.56599553627631 8.5259296410754 8.4917457871688 8.59237157770572 8.45606151062862 8.46232317053183 8.5658488317605 8.1634732407469 8.5913537725342 8.48228659890307 8.44571154827842 8.2512887845714 0.120582776553383 0.120242362183968 0.125421711447432 0.124898080928763 0.120360922485008 0.122064263900348 0.120408501110682 0.120464702847807 0.12333459448049 0.123114936377625 0.127474856910720 0.12125454164503 0.118555363945480 0.122427882787603 0.132690119583273 0.120965751205406 0.123720318210331 0.132738388696620 0.115817154513927 4 4 + 7215350 7215728 7215527.909 7214697 7215983 + gene protein_coding_gene FALSE TRUE AT4G12040.1|AT4G12040.2 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 7 (AtSAP7) (SAP7) [Arabidopsis Thaliana] (GB:Q9SZ69); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT4G22820.2); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.268270799049854 3.76080788207723 0.00507084505052129 1 4.94421971138002 17.4184818478297 0.268270799049854 0.0327299964496731
AT3G14180_at 5.3686492766377 5.3888435807746 5.17905638794269 4.96660905669049 6.01250488209765 6.11416413782154 4.53501849553036 4.88465039678707 4.57519734363072 4.75578458902959 4.74923674802427 5.07744223658974 4.88392977359918 5.13713267072014 4.67936006121494 4.7415152024921 4.43192105845611 4.77003543152096 4.76384801914867 0.214458446020934 0.227440825852138 0.220102611391963 0.221408747985884 0.228941554051567 0.227852948207873 0.217410209327634 0.222169052919716 0.225849821800190 0.222721489006060 0.216682888646941 0.220377379258867 0.217509782832955 0.222026358441806 0.218944559368868 0.218095418593009 0.222077628517689 0.214458446020934 0.216715133906321 3 3 - 4707345 4707863 4707702.636 4707120 4708855 - gene protein_coding_gene FALSE TRUE AT3G14180.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G54060.1); similar to Os02g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047163.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); similar to Os05g0560600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056310.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.317169087964922 3.75917466943302 0.00508307952121345 1 4.94204466521803 10.0597361760003 0.317169087964922 0.073036192778722
AT4G01090_at 5.87212910408051 6.27472016434877 6.21355944610501 6.30075382388375 6.57851943593354 6.19228809565525 6.18438984704614 6.04490628147618 5.63191548033804 5.88865207542832 6.96978777327097 5.60436862774172 6.18319164697455 6.59534383521068 5.600859856784 6.07516622478694 6.05594006282107 5.97361762427009 5.37160491743427 0.208977632747106 0.211594172891961 0.217278536912924 0.208977632747106 0.215093904533407 0.231415760732492 0.214358342286294 0.222332190920498 0.228485690714837 0.209860454046817 0.212341730105158 0.208977632747106 0.208977632747106 0.216660767527001 0.217312088718554 0.215310581156653 0.218414327746446 0.228798725543961 0.210611547574934 4 4 - 470981 471637 471296.727 470515 473792 - gene protein_coding_gene FALSE TRUE AT4G01090.1 extra-large G-protein-related similar to extra-large G-protein-related [Arabidopsis thaliana] (TAIR:AT1G01440.1); similar to unknown [Striga asiatica] (GB:ABE66402.1) 0.364402074952725 3.75785081814414 0.00509301957194619 1 4.94028130636724 12.0891625819242 0.364402074952725 0.100656651956615
AT1G49650_at 5.67461824305234 6.25160732365824 3.32634614298319 3.68583786150544 5.04123401243577 4.71022672793351 5.26463522863612 5.2875774369781 3.27840667621175 4.94287200932773 3.89750887819739 5.38309879555366 4.88664965068562 4.48180977926038 5.03008846314235 5.14759975520864 4.85908806914759 4.57229209510618 4.38350707696259 0.283817669835536 0.292856596341766 0.291925003826670 0.287229020559031 0.283817669835536 0.286520532129311 0.283817669835536 0.285665321628799 0.303820008173112 0.288096995406737 0.285829183645951 0.288679771012227 0.283817669835536 0.288986613270477 0.292817044045918 0.283817669835536 0.286496064828969 0.283937639678278 0.289971652359848 1 1 - 18381057 18381606 18381392.182 18380923 18382302 - gene protein_coding_gene FALSE TRUE AT1G49650.1 cell death associated protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G49660.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83375.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.424013345123176 -3.756642374226 0.00510211112976969 1 4.93867142887939 9.39719146712538 -0.424013345123176 0.130910204142052
AT1G18600_at 6.31789510434372 6.04915760439281 5.8945282302741 6.36414606900513 6.34142452773454 5.85169892399406 5.66623670257808 5.71983846950741 5.76373482242174 5.27045750988490 6.28115095306836 6.51032601992885 5.58230307701192 6.16237127281494 6.25662352990488 5.9474196261345 5.69008355964826 6.2520160481146 5.25703992081886 0.194256649636325 0.194360004870440 0.197429407666107 0.191414940332583 0.190476641118346 0.196245949667035 0.193875912258128 0.192740276949125 0.195082124588753 0.198512117477932 0.199376409872353 0.193280691143598 0.194584819417784 0.204026848911193 0.200643676570179 0.190476641118346 0.201679360632437 0.196851509916882 0.203400557709436 1 1|0 +|/ 6401405 6402536 6401971.3 6400396 6402783 + gene protein_coding_gene FALSE TRUE AT1G18600.1 rhomboid family protein similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT1G74130.1); similar to Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis (ISS) [Ostreococcus tauri] (GB:CAL52917.1); similar to Os01g0763100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044332.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) 0.414771738666454 3.75283396728439 0.00513087614168674 1 4.93359640634064 11.7834644599138 0.414771738666454 0.126633579414629
AT2G23810_at 10.0986570303510 10.5207901013818 10.8723739181051 11.0266363019822 10.7910697454761 10.2549973701204 9.53957056971888 9.62642173445952 10.2981847055844 9.59628802350717 10.0784878376223 9.66930580222065 9.7841951309592 10.3086264769691 9.34123485707459 9.62942780204681 9.53983355010335 10.0614536151859 9.4485647300249 0.129629371097480 0.127752839007066 0.126895435007998 0.126632450091853 0.130487423538897 0.132050867162164 0.132692647736671 0.132304120462012 0.132497417931649 0.124833769100208 0.124588940380196 0.124588940380196 0.132821852429368 0.125317276254226 0.133516778053157 0.129990914194567 0.143062089559143 0.124588940380196 0.130792951038493 2 2|0 -|/ 10142954 10144179 10143295.9 10142685 10144531 - gene protein_coding_gene FALSE TRUE AT2G23810.1 TET8 (TETRASPANIN8) Member of TETRASPANIN family similar to TET9 (TETRASPANIN9) [Arabidopsis thaliana] (TAIR:AT4G30430.1); similar to senescence-associated protein 5 [Hemerocallis hybrid cultivar] (GB:AAC34855.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.405233811296854 3.75195708719473 0.00513752361966772 1 4.93242756777582 20.1326061566468 0.405233811296854 0.121989414088816
AT1G14280_at 9.60634371652337 9.72027195579573 9.20381330544122 9.45672438980206 10.1905170605274 9.91875605482205 10.8240867087013 10.6966940832672 11.2898318509139 11.0151748362009 11.5171157548530 11.2971772990874 11.4012272755690 11.2031701062618 11.0127917203521 11.2549648009024 10.8113761422412 11.0600253867778 11.5981162941110 0.103462191375820 0.095588526270436 0.101994479951330 0.101342614804072 0.0970268647355033 0.0994875937272464 0.097141520644875 0.103473474204357 0.110042475344816 0.0995971960856123 0.100946647809006 0.0986869442767848 0.097859626641673 0.101394823261143 0.0996525847044258 0.0977026534283387 0.105686218461589 0.0967375532098672 0.096276401977912 1 1 + 4878422 4878950 4878735.636 4877622 4879144 + gene protein_coding_gene FALSE TRUE AT1G14280.1 PKS2 (PHYTOCHROME KINASE SUBSTRATE 2) Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. similar to PKS1 (PHYTOCHROME KINASE SUBSTRATE 1) [Arabidopsis thaliana] (TAIR:AT2G02950.1); similar to Putative phytochrome kinase substrate 1, identical [Solanum demissum] (GB:AAT38801.1) -0.31285317320501 -3.74992291516693 0.00515297959305055 1 4.92971565142683 21.2000369366088 -0.31285317320501 0.0707255135341402
AT1G29970_at 9.05680577249108 9.27401241638004 9.35548466327407 9.51282205881586 9.6769118537694 9.6600068190493 8.37357730395204 8.91880168209285 9.10503608318584 8.44729816911412 8.73105405478293 8.62206918320996 9.09751429298066 8.94283440151272 8.45466716424595 9.02253587345488 8.86974435910713 8.94469313195592 8.65936864680333 0.132709730429454 0.132031849116588 0.135706487907160 0.128784300959838 0.134294311422310 0.134922162938321 0.130513725660028 0.127819306050824 0.140732137934729 0.128670666440921 0.132358333147452 0.133271007048984 0.124354810526833 0.128198588786674 0.143290756568693 0.131861040120927 0.147669449020382 0.128360826136629 0.132825859244691 1 1|0 -|/ 10500110 10501246 10500721.222 10498335 10501436 - gene protein_coding_gene FALSE TRUE AT1G29970.1|AT1G29970.2 RPL18AA (60S RIBOSOMAL PROTEIN L18A-1)|RPL18AA (60S RIBOSOMAL PROTEIN L18A-1); structural constituent of ribosome Identical to 60S ribosomal protein L18a-1 (RPL18AA) [Arabidopsis Thaliana] (GB:Q8L9S1;GB:Q9C8S2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17080.1); similar to Os06g0359400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057602.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2)|similar to 60S ribosomal protein L18A (RPL18aA) [Arabidopsis thaliana] (TAIR:AT1G29965.1); similar to Ribosomal L18ae protein [Medicago truncatula] (GB:ABE90867.1); contains InterPro domain Ribosomal L18ae protein; (InterPro:IPR002670) 0.371955906476662 3.74815517211137 0.00516645132018236 1 4.92735840657706 18.0149894999068 0.371955906476662 0.105192353898554
AT2G35050_at 10.6273088046880 10.5270981962514 10.8435705545394 10.8317685326987 10.9258730065409 10.7437921169596 10.4318623489870 10.2157273605629 10.5554297236927 10.3278338640643 10.8781193356636 10.5813966608588 10.5702789563297 10.6020925035812 10.4853662793241 10.6543010054866 10.6131289848703 10.5025299714718 10.3851744816638 0.0637906708197289 0.062704400088668 0.0630395617258824 0.0643528996752493 0.062464805431506 0.0663623484823839 0.061817234361423 0.0624059226445293 0.0690773921780695 0.0636422745922602 0.061817234361423 0.061817234361423 0.0640437653907115 0.0636179826422296 0.0627440383463038 0.061817234361423 0.0635514057206406 0.0639512743706454 0.0651482378259497 2 2|0 +|/ 14780829 14781783 14781386.333 14776787 14782114 + gene protein_coding_gene FALSE TRUE AT2G35050.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G79570.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G16270.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06418.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.286920448726816 3.74729116341334 0.00517304942191787 1 4.92620609288174 21.1602323161561 0.286920448726816 0.0519305984520783
AT1G80030_at 7.34556347824567 7.37402205694429 6.99668101149158 6.96231070741009 7.23030339749794 6.87598776706692 8.82459926901882 8.40814614701201 7.61626743283608 8.22002687126737 8.3966555391953 8.49245343147749 8.26741947055387 7.93491927059131 8.38712085261901 8.63976369735569 7.5502303699843 8.05189675357005 8.0078082930936 0.166998201703915 0.165406832869939 0.162997985637249 0.165591787790882 0.161799479498557 0.177631299401484 0.166932305805454 0.167571826288051 0.170400502384906 0.162368005637382 0.164168467130597 0.164127425461660 0.165995266449685 0.170402860311942 0.162771423031705 0.163019593443737 0.174723418634612 0.168500957567375 0.166689865044151 1 1|0 -|/ 30110572 30111487 30110996.625 30109723 30113925 - gene protein_coding_gene FALSE TRUE AT1G80030.1|AT1G80030.2|AT1G80030.3 DNAJ heat shock protein, putative similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT3G17830.1); similar to DnaJ homologue [Pisum sativum] (GB:CAA96305.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.352369396417936 -3.74127676606449 0.0052192278451352 1 4.91818156055227 15.5837475404529 -0.352369396417936 0.0949381067426727
AT1G08580_at 6.08928389429769 6.44012552366325 6.51957546710229 6.02224819022594 6.03171537665554 6.08468660920255 6.63499922626049 6.62951811657123 5.6541643876438 5.98307474630242 5.35537639677751 6.02528547689616 5.13356911652327 5.39802833770422 5.77421522223839 5.40613326934223 5.37888824599972 4.90791554593322 6.01105252607812 0.213159710769301 0.207400570496590 0.218742782747534 0.217662956163806 0.213989123610737 0.209825303807277 0.209620969027885 0.216922871500557 0.233736830021177 0.218065556905687 0.220089932263804 0.209784298460967 0.209381700643945 0.215471957057946 0.210461308485997 0.210514334128976 0.206832161955727 0.209625651275110 0.213265484865738 1 1|0 -|/ 2715301 2716330 2716023 2715082 2716407 - gene protein_coding_gene FALSE TRUE AT1G08580.1 similar to Pm52 [Prunus mume] (GB:BAE48663.1) -0.372131357324761 -3.73972501339013 0.0052312131032871 1 4.91611026379339 11.9591142195482 -0.372131357324761 0.105727797949032
AT2G36590_at 4.20425016814045 5.08613453643299 3.43597461806767 4.01197905278929 5.26104564978055 4.7162998844511 6.69977085884829 6.853344390693 4.69267378870745 5.4061020911309 4.70616087899724 5.94041241797543 4.46681585356648 5.15050511645143 3.94961127040181 5.78851664157019 4.97410200436038 4.37054546559834 4.13446250816618 0.250507054839730 0.247782497559639 0.258196850815979 0.242857952958775 0.255653702801462 0.250709346180821 0.254673330752990 0.247192855619562 0.244044791314500 0.242569768065539 0.247589978197643 0.245343224068194 0.254070522065227 0.242919408002837 0.250625378209124 0.24509102004411 0.25517548334161 0.255542428455274 0.246103102513566 2 2|0 -|/ 15350204 15350756 15350497.111 15350085 15352416 - gene protein_coding_gene FALSE TRUE AT2G36590.1 ProT3 (PROLINE TRANSPORTER 3); amino acid permease Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots. similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G39890.2); similar to ProT2 (PROLINE TRANSPORTER 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT3G55740.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93109.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.590314638571439 -3.73565806973274 0.00526276385203995 1 4.9106798810466 9.86497314595875 -0.590314638571439 0.206931262197283
AT1G09160_at 4.46363436123349 4.61785976793183 3.84431999076524 3.91081669447841 4.49378316303506 4.27628793281291 5.32163442466087 4.96469586385015 5.12659765318022 5.45148732737144 5.86235724107018 6.22599071791408 5.23476118954362 5.12853899347335 5.71145916317823 5.18599376526144 4.62518313830383 4.99336354198993 5.33999675114162 0.223589147767302 0.220889321588508 0.220643878662825 0.228251466068997 0.216306649868351 0.219723293916011 0.216306649868351 0.224078351468838 0.223302971086807 0.226770121947663 0.225131053172574 0.221313643882869 0.224636967063819 0.225323297288678 0.222317406277151 0.219739795172268 0.221718452731160 0.218817358416732 0.219934875278498 1 1 - 2953268 2953937 2953577.909 2952773 2955669 - gene protein_coding_gene FALSE TRUE AT1G09160.1|AT1G09160.2 protein phosphatase 2C-related / PP2C-related similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G68410.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABD28356.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85667.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.322862717101053 -3.73499972831973 0.00526789014631002 1 4.90980058902271 9.82512063121579 -0.322862717101053 0.077954662453912
AT3G47650_at 10.9468907687311 11.0336607440358 10.4672293757443 10.3709446185066 10.9212831396575 10.3687612473269 11.3860775073637 11.5247239604632 11.0268349270174 11.3845368090689 11.1319885618773 11.3696773124302 11.0174781806176 11.0955939858438 11.7040703945377 11.1819519837647 10.7355554841770 10.9295433264376 11.1311245352394 0.103263124357180 0.100229459592467 0.105785864467469 0.104717320563633 0.0983632653557648 0.125523326252085 0.101164864613790 0.10103152449835 0.107196627022059 0.100628417989777 0.0979545301461453 0.0978405817488058 0.099349226204421 0.0971767402467677 0.105518157243433 0.096967194937195 0.102688903113537 0.104506482485552 0.100432096298034 3 3|0 +|/ 17580562 17581223 17580887.111 17580490 17581552 + gene protein_coding_gene FALSE TRUE AT3G47650.1 bundle-sheath defective protein 2 family / bsd2 family similar to putative chaperon P13.9 [Castanea sativa] (GB:AAK25754.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) -0.362941668285392 -3.73433166246942 0.00527309758369742 1 4.90890823991544 22.0407286673050 -0.362941668285392 0.101100522774842
AT4G24160_at 7.31376904041074 7.44634581757848 7.71352843602712 7.70500060284056 7.34480958681849 7.11055397155915 7.11194937566194 7.10913756695653 6.74838968317249 6.57176339373424 6.72492581017199 6.82852558381247 6.60654547712565 7.08308853507126 6.95440209567706 6.95445766183523 6.85016170023049 6.99882837783015 6.29684275078749 0.183349277574583 0.171169315762339 0.178962281893515 0.177503651718863 0.175998265855701 0.176812246959724 0.171169315762339 0.175953241266791 0.181506431705791 0.176440353455751 0.176256325200707 0.171204578827142 0.176217521193976 0.177662939832174 0.177027768710849 0.172142814310663 0.179745145309499 0.17632014313108 0.174636458705427 4 4|0 +|/ 12541206 12542164 12541749.778 12539787 12542499 + gene protein_coding_gene FALSE TRUE AT4G24160.1|AT4G24160.2 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36530.2); similar to Os09g0520200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063697.1); similar to CGI-58 protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46672.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089)|similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G36530.2); similar to Os09g0520200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063697.1); similar to CGI-58 protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46672.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Peptidase S33, prolyl aminopeptidase; (InterPro:IPR002410); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.279645497573643 3.73267321533138 0.00528604848897507 1 4.90669271829031 14.0639445569570 0.279645497573643 0.0466069737638615
AT1G72150_at 12.3567667153864 12.4863095352064 12.6863728048657 12.6993126575691 13.1303051633848 13.0010543703343 12.6070025891487 12.5645818287972 12.8445279609719 12.6735164252766 13.1469024025951 12.6980508944073 13.1850811000864 13.1443109782074 12.4697715414218 12.9206838542141 12.8944914701603 13.0062068748234 12.8115693077015 0.075092540562024 0.0741316742893963 0.0750695557706846 0.0798200079268662 0.0769714404678355 0.0803229294735454 0.0751569979810872 0.073661169042988 0.0792277164726556 0.0749069430052859 0.0794971906577531 0.0741044678430072 0.073435382710988 0.077137789447514 0.0791256104443304 0.0735679060691665 0.0844275256079429 0.0753009818592739 0.0744381915382759 1 1|0 +|/ 27153366 27154252 27153879.7 27152122 27154642 + gene protein_coding_gene FALSE TRUE AT1G72150.1 PATL1 (PATELLIN 1); transporter novel cell-plate-associated protein that is related in sequence to proteins involved in membrane trafficking in other eukaryotes Identical to Patellin-1 (PATL1) [Arabidopsis Thaliana] (GB:Q56WK6;GB:Q9C7U0); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G22530.1); similar to putative cytosolic factor [Trifolium pratense] (GB:BAE71201.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.266122786704973 3.7323511593255 0.00528856735689495 1 4.90626243366645 25.5463258518230 0.266122786704973 0.0325848974967118
AT1G22050_at 6.40556354358773 7.42536700071214 7.63121842880741 7.5670789039184 8.26812617849738 7.99112396880268 7.57014905625991 7.51173394569363 6.7335557185934 7.05352834408995 7.410021307635 7.38462424619076 7.77303656518265 7.38357571090911 7.17619222128056 7.88423464867108 7.76672544084411 7.31882657811189 7.44300232330985 0.195705017358832 0.185882600301673 0.193103988984159 0.184709451845701 0.188193456409776 0.191356554082881 0.185359393053439 0.200168415849670 0.198401532160473 0.194090817819261 0.180661305803572 0.185336301126416 0.189085025447226 0.195402541077110 0.189249297730996 0.183555090287925 0.204895359601041 0.185530549655749 0.187539125203480 1 1 + 7771931 7772808 7772464.545 7771659 7773143 + gene protein_coding_gene FALSE TRUE AT1G22050.1 ubiquitin family protein Identical to Membrane-anchored ubiquitin-fold protein 6 precursor (Membrane- anchored ub-fold protein 6) (AtMUB6) (MUB6) [Arabidopsis Thaliana] (GB:Q8GWJ6;GB:Q9LM54); similar to MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G77870.1); similar to NTGP5 [Nicotiana tabacum] (GB:AAD00119.1); similar to Os02g0750600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048133.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.535821305649264 3.73210191883021 0.00529051759435845 1 4.90592942352003 14.8407201542104 0.535821305649264 0.183491445574632
AT1G23030_at 5.24037913869411 5.09872783009843 4.12086808842615 4.24583997759124 5.40724181796745 5.82833102409262 6.19060651372489 6.13328351577834 8.248466020325 6.41813121469849 8.99668848455304 7.980670962505 7.18666437249092 7.46948935880063 7.90419724200763 6.94506001519594 5.93390429390723 6.8602167321419 7.22592960680717 0.253416294778391 0.230682128735921 0.268259553383541 0.233566875065286 0.229930227760438 0.230939497554243 0.231877766029466 0.231436764546755 0.231329916243797 0.231252354202197 0.237125295041288 0.231712381307545 0.225102018611431 0.236468141507333 0.225719006582175 0.236407926564762 0.243540751718192 0.2303694318133 0.234686035563462 1 1 + 8158235 8158728 8158461.818 8156635 8159066 + gene protein_coding_gene FALSE TRUE AT1G23030.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71020.1); similar to Os03g0275900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049711.1); similar to Os02g0732200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048024.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD67947.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.326538268565589 -3.73022922126337 0.00530519538300197 1 4.90342700408506 12.6367199282852 -0.326538268565589 0.0804816035372876
AT1G01800_at 10.0067710290205 10.1355518654757 9.68906673299284 9.7567581267 9.77513473174245 9.64736657324029 9.98004449990825 10.0692094522096 9.55347769637471 9.72270836439559 9.5678281892881 9.49929071880736 9.5447840669545 9.34374906466621 9.3847454528352 9.53541137118049 9.18304471931977 9.3195556175404 9.61628980168042 0.12182559774469 0.122443524296904 0.125412238619761 0.119736822919213 0.115865087853242 0.122967887366646 0.118285302823082 0.119968241606684 0.119756575017508 0.117734362756196 0.12054959382303 0.120220124781978 0.118891856929118 0.127122318095147 0.123299295802461 0.118266033552192 0.120557406102579 0.124714744180495 0.116952328526041 1 0|1 /|+ 294214 294838 294570.1 293342 295040 + gene protein_coding_gene FALSE TRUE AT1G01800.1|AT1G01800.2 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G61220.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28441.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.26966840394709 -3.73018149663054 0.00530557000272930 1 4.903363224228 19.40905109519 -0.26966840394709 0.0368901725903914
AT1G71180_at 5.76923543469362 5.3826105158733 5.26283477480829 5.14109614246921 4.85240336751116 5.04768568846282 5.45388764855458 5.46924731712925 5.60152067719112 6.18812262015715 5.88739343524574 5.32820770730238 5.3921015156827 5.67855053015188 5.65737287892688 5.60941015038905 5.72114090647401 5.62186510932151 5.65192551200851 0.167349207412729 0.174859457999213 0.177007565969348 0.187960415448837 0.17765259735894 0.180359833304791 0.175442592538757 0.176715997397890 0.171572048351342 0.170227336477458 0.176641616660429 0.171660701889872 0.167349207412729 0.183731191607756 0.175476249798708 0.168974710424879 0.174693508659080 0.170533140180582 0.171149406483925 1 1 + 26836440 26836904 26836664.909 26835997 26837371 + gene protein_coding_gene FALSE TRUE AT1G71180.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71170.1); similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Musa acuminata] (GB:ABF69966.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183) -0.32229561317432 -3.72931619982629 0.00531236711916919 1 4.90220676829828 11.0103058856740 -0.32229561317432 0.0779073235426
AT1G02910_at 8.37092317848842 8.48458774271622 7.9477733729403 8.17398733740153 8.57866589215748 7.55544488888128 9.197459066517 8.9226136428521 8.70711485497224 8.89265222857525 8.54683948325572 8.75377113107166 8.19392046502581 8.50813024016228 8.3934012359676 8.56336163488195 7.79601759330336 7.92791824277672 8.6471564670064 0.165087559270198 0.157908374156548 0.180288332679147 0.165084910541902 0.162098495003550 0.178307355110197 0.161180222400741 0.159740176704487 0.173897662719177 0.157908374156548 0.166065252437985 0.158919027074331 0.163306204974458 0.175595153207155 0.161962112214007 0.158234958094464 0.181546983235299 0.162518502290404 0.157908374156548 1 1|0 -|/ 655765 656607 656223.4 655577 658148 - gene protein_coding_gene FALSE TRUE AT1G02910.1 LPA1 (LOW PSII ACCUMULATION1); binding Mutants defective in this gene were shown to have a reduced PSII content (overall reduction in the levels of several PSII subunits) and a disrupted grana stack structure. The N-terminal half of the protein contains two tetratricopeptide repeat (TPR) motifs that are arranged tandemly, each consisting of a 34-residue degenerate consensus sequence. The N-terminal sequence is rich in positive and hydroxylated amino acid residues. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28740.1); similar to Os01g0358300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043014.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55849.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.546741274171973 -3.72857358614251 0.00531820790388103 1 4.90121418376965 16.9461291503228 -0.546741274171973 0.188511553458482
AT4G32420_at 6.84793975262534 6.84137834791237 6.86250740596039 6.42157827099704 6.68088012168681 6.77654866688487 7.37252851232756 7.38314695506425 7.3480995042739 7.37728787456296 6.95901736477529 7.11354606401757 7.61205824272943 6.8319916238032 7.20716667573289 7.40743453851683 7.35565948885988 7.28983448381028 7.5978660735075 0.174876436496835 0.17274458918442 0.173260156524141 0.175550166647702 0.170990622546576 0.187505897897729 0.174110319644367 0.171845157388357 0.171735264549218 0.182211255146230 0.181448473086836 0.181978401584204 0.168402081761194 0.17711713203983 0.174006876817004 0.173818530250505 0.171492321879002 0.173218318121827 0.172978829464432 4 4 - 15647620 15648303 15648007.4 15647352 15652760 - gene protein_coding_gene FALSE TRUE AT4G32420.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G63400.1); similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin type [Medicago truncatula] (GB:ABE78987.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.322432849717109 -3.72714621201973 0.00532945360735287 1 4.89930610151735 14.2299000263801 -0.322432849717109 0.0781101306435525
AT4G32760_at 9.48794363279969 9.4253843198099 9.67189962275848 9.61502789375336 9.9408704825518 9.74172733545242 9.57733860138646 9.37012134219566 9.31482604909078 8.81071756702838 9.44608870140344 9.03576663197967 9.39462131258215 9.34848363144697 9.06032492440852 9.35791664522614 9.40038754668943 9.24731326691926 8.85357099018447 0.0990173911337374 0.0967766376666554 0.105000503775780 0.101591399197975 0.105390750373472 0.101763663959253 0.107296983371998 0.101688857061027 0.103425443511574 0.113657910789766 0.101995706733180 0.0987254404544509 0.102840522017884 0.100209589248833 0.107210186943045 0.0967766376666554 0.107484085580430 0.106778135930348 0.110218324255828 4 4 + 15803261 15803810 15803536.364 15799144 15804180 + gene protein_coding_gene FALSE TRUE AT4G32760.1 protein transporter similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08790.1); similar to VHS and GAT domain protein [Glycine max] (GB:ABB90835.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.285254495030914 3.72691241943141 0.00533129797013212 1 4.8989935426085 18.7434896711801 0.285254495030914 0.0518428122420526
AT3G15940_at 4.91880569814303 5.00571810395304 3.87928885397285 4.21258276308058 3.81720021746118 4.24804156453208 5.01259444708412 5.61010456895509 4.79400675221451 4.85093912969482 5.18239322126083 5.62194327447148 5.65819863148816 5.3108680874769 5.34856716600906 4.61959990926033 4.92525400621369 5.27317172582681 5.43549569988005 0.26217777757616 0.257863227805944 0.270262711520684 0.259978921819198 0.256117407740872 0.261737166869839 0.257090218911514 0.258958014553041 0.266551989590269 0.265529873497647 0.256117407740872 0.260566572704514 0.256117407740872 0.259793794986603 0.256117407740872 0.256117407740872 0.261660569418168 0.270152546079062 0.259734212799365 3 3|0 -|/ 5393735 5394384 5394157.8 5393519 5396765 - gene protein_coding_gene FALSE TRUE AT3G15940.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G52420.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus ATCC 33223] (GB:ZP_00777833.1); similar to Glycosyl transferase, group 1 [Roseiflexus sp. RS-1] (GB:ZP_01355979.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.44092085630885 -3.7251863451685 0.00534493576306796 1 4.89668567978755 9.72269870882143 -0.44092085630885 0.140726665976598
AT4G28740_at 9.55292548017013 9.67222195571954 9.9723184441797 9.96382949334747 9.80096503132247 9.6077625360775 10.2109266254236 10.2434620177463 9.78312255553051 9.9810081175276 9.39911219495398 9.02186779880568 9.6537882581206 9.50284136066707 9.0444175365684 9.6567009159548 9.887340119001 9.23298174383648 9.89099915267424 0.072795837317539 0.072453810631393 0.0766835138458308 0.072453810631393 0.0724975585989442 0.0804636397227646 0.073655627890437 0.072453810631393 0.079610393538377 0.072453810631393 0.0755245330568107 0.0737832082867693 0.0742616762674731 0.0748213450395441 0.0774268620173098 0.0739090693246782 0.0750344539989233 0.0839779014337958 0.0727276456201275 4 4|0 +|/ 14201729 14202505 14202100.2 14200909 14202687 + gene protein_coding_gene FALSE TRUE AT4G28740.1 similar to LPA1 (LOW PSII ACCUMULATION1), binding [Arabidopsis thaliana] (TAIR:AT1G02910.1); similar to OSJNBa0043L24.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE04717.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55849.1); similar to Os04g0507100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053262.1) -0.271913588894357 -3.7245853342881 0.00534969306896954 1 4.89588198446278 19.5330137061146 -0.271913588894357 0.0397232900894287
AT1G21310_at 6.23538209622486 6.1184628229041 6.48125451590272 6.89438482165828 6.75400893182621 6.23646160063005 5.17091989422454 4.81415765899846 6.65967268355149 6.60831430755039 6.34642643407085 6.41935029027716 6.45486336827124 5.74339962996171 6.42372374747617 6.39070305336021 6.63079745041931 6.64268077203391 6.36551435641223 0.323867395727176 0.353929145172059 0.386973375663037 0.378749269519751 0.342499554414232 0.343140925433793 0.328576985767585 0.377061733569218 0.299225652561670 0.338508359820163 0.322378020075387 0.299225652561670 0.299225652561670 0.309433780366954 0.321075676751013 0.299225652561670 0.299633882750187 0.303676727913844 0.299225652561670 1 1 - 7453757 7454237 7453979 7453232 7454997 - gene protein_coding_gene FALSE TRUE AT1G21310.1 ATEXT3 (EXTENSIN 3); structural constituent of cell wall Encodes extensin 3. Identical to Extensin-3 precursor (AtExt3) (AtExt5) (EXT3) [Arabidopsis Thaliana] (GB:Q9FS16;GB:Q9FS14;GB:Q9LMP2); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G26240.1); similar to Extensin-3 precursor (AtExt3) (AtExt5) (GB:Q9FS16); contains InterPro domain Extensin-like region; (InterPro:IPR006706) 0.421894746739387 3.72281871909072 0.00536370277377222 1 4.89351927324694 12.5511258139987 0.421894746739387 0.131735559504442
AT1G69030_at 5.40802780237095 5.37528665251776 4.52325997218225 4.11243208453968 4.71046981568256 4.73131063858594 5.98448854445707 5.82860653794966 5.27591765328615 5.6487657322731 6.45779045784287 6.77040211492819 5.28495870760272 5.29538540466097 6.80084545346178 5.70062775957058 4.58345733766685 6.01456674781719 5.19170267439844 0.225246546191109 0.215231628648189 0.219937464270872 0.223219035445211 0.222686896843358 0.232387985360149 0.224972893729147 0.227167595099740 0.232688131513697 0.223182662261355 0.218957647541785 0.221362380153554 0.217645855967424 0.225456318662078 0.223582213110761 0.221465082550895 0.231735735748709 0.215231628648189 0.225556353919734 1 1|0 -|/ 25951246 25952487 25951981.111 25950928 25952925 - gene protein_coding_gene FALSE TRUE AT1G69030.1 similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G26300.1); similar to Os04g0662000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054153.1); similar to Os02g0726400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047990.1); contains InterPro domain BSD; (InterPro:IPR005607) -0.319179347642461 -3.7221024043043 0.00536939442646825 1 4.89256111986672 10.7020517233340 -0.319179347642461 0.0763375244617166
AT1G19240_at 6.79496504011453 6.80582839513105 6.11988436200954 5.94334526534233 5.95576073299974 6.14420234661869 5.69148101807763 5.94577499124464 5.89056844459801 5.15217908368709 4.95249222402341 5.06308698092221 5.12643548092733 5.2752173090898 5.12432136395327 5.06861941291856 5.1920615933108 5.32411286267621 5.36574442685822 0.214500231280561 0.205128941564523 0.203456920561366 0.207761928330082 0.199256697506444 0.204063324313151 0.211830717044656 0.201805724409484 0.199256697506444 0.202904599514326 0.202018324782892 0.201744898055044 0.206581157163824 0.202327947209192 0.201855333916269 0.199256697506444 0.200508061079029 0.199256697506444 0.199256697506444 1 1|0 -|/ 6649572 6650285 6649923.1 6649234 6650411 - gene protein_coding_gene FALSE TRUE AT1G19240.1 similar to Os01g0144700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042006.1) -0.298709049651398 -3.71844750459206 0.00539853532027299 1 4.88767103501554 11.4803006298717 -0.298709049651398 0.0627450801973807
AT2G21440_at 6.28417965213861 5.7889180025045 5.95336811904598 6.14572507661295 5.91787182214969 5.6512875597615 6.50203742677733 6.50112795623582 5.73943552294434 5.9697654397081 5.29161776335989 5.48136184358642 5.60074162458104 5.14995343011739 5.82073550474103 5.37716771074105 5.70199072793118 5.82972576098724 6.0175394412603 0.198847364634583 0.19675168602006 0.195491036756944 0.203794795124976 0.195369739882269 0.195447244959752 0.203782609115425 0.196468700376694 0.201077878112521 0.195077296759130 0.200218055646004 0.19693952204518 0.201637677799713 0.203738830891054 0.194608188574038 0.197379021923737 0.202674445942544 0.2021679458137 0.20046824583876 2 2 - 9180796 9181286 9181043.273 9180640 9186246 - gene protein_coding_gene FALSE TRUE AT2G21440.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G19610.1); similar to Os03g0801800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051595.1); similar to putative RNA binding ribonucleoprotein [Oryza sativa (japonica cultivar-group)] (GB:AAO72376.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.364627143618393 -3.71800300663942 0.0054020907842371 1 4.88707617663627 11.8133520837666 -0.364627143618393 0.102869796766742
AT3G12590_at 5.13156779740200 5.53438014815718 5.1264671367883 5.02883001535616 6.07178330986636 5.48228057754107 5.22829351851266 5.19899203521605 4.22083223329116 4.49941106659699 5.16145143758569 4.81808454260432 5.20730845165247 5.20688081347925 5.35305262905531 5.04039922764758 5.46560512735171 4.15202185866943 4.45078806218878 0.282524318732876 0.266950259485776 0.268269336199536 0.28876805837653 0.264495401680086 0.283642589228516 0.264495401680086 0.270335785751342 0.271591356679665 0.294622145212254 0.270444645524525 0.266651119535332 0.264495401680086 0.271431394885581 0.264495401680086 0.264495401680086 0.286908066639708 0.287987822989586 0.276366260141099 3 3 - 3997060 3997255 3997147.5 3995729 4003664 - gene protein_coding_gene FALSE TRUE AT3G12590.1 similar to Os01g0974300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045553.1); similar to hypothetical protein DDBDRAFT_0205357 [Dictyostelium discoideum AX4] (GB:XP_642273.1); contains domain ARM repeat (SSF48371) 0.40714430435637 3.71717758095903 0.00540869982095749 1 4.88597145301201 10.0707964665373 0.40714430435637 0.124811031393314
AT1G18640_at 5.4362253488399 5.62247040365599 5.27992226924716 5.56755236046893 5.91488884236419 5.9552194991873 5.07712281445429 5.33087141340305 5.98104907554633 5.62487331732169 7.35243944471523 6.14740650965505 6.06813036096316 6.39159560392812 7.00694178755633 5.99584635392261 5.25764933788759 6.2217381245365 6.35635082190362 0.189353796799211 0.188747778052416 0.184675552542097 0.194453547299114 0.184906530156618 0.192199705060905 0.184649116664225 0.191382904118646 0.192152706946521 0.197013319630024 0.198126334674039 0.190880859100028 0.193674919286020 0.192878466726376 0.193562718771043 0.190742459729925 0.191202818075966 0.199287798979143 0.197030785380429 1 0|1 /|- 6416568 6417549 6416968 6416349 6418682 - gene protein_coding_gene FALSE TRUE AT1G18640.2 PSP (3-PHOSPHOSERINE PHOSPHATASE) 3-phosphoserine phosphatase acting in the last step of serine biosynthesis within the chloroplast Identical to Phosphoserine phosphatase, chloroplast precursor (EC 3.1.3.3) (PSP) (O-phosphoserine phosphohydrolase) (PSPase) (PSP) [Arabidopsis Thaliana] (GB:O82796;GB:Q9FZ85); similar to Os12g0502400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066829.1); similar to hypothetical protein [Sorghum bicolor] (GB:AAD27569.1); similar to Os11g0629500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068315.1); contains InterPro domain HAD-superfamily hydrolase subfamily IB, PSPase-like; (InterPro:IPR006383); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Phosphoserine phosphatase SerB; (InterPro:IPR004469) 0.31525864160014 3.71679662145231 0.00541175299069156 1 4.88546155334928 11.6693555416123 0.31525864160014 0.0741177595612082
AT1G14000_at 9.49747518690137 9.72703403562615 9.94150435523158 9.8581515894593 10.0592811510939 9.68892739788676 9.60179668349425 9.56432616218837 9.63930605572864 9.38639051924317 9.9668022534014 9.79998543697498 9.6414798264342 9.63920446833697 9.28075574117024 9.7834779023569 9.68467408957571 9.59334637752604 8.94588595460907 0.101650857006806 0.0988851148268388 0.102234229178155 0.101702452311966 0.101304152664165 0.104904685994248 0.102256383329205 0.102759081688841 0.107484456501012 0.108395145784446 0.104215060919693 0.0988851148268388 0.106478907474691 0.107934960351872 0.100108819184143 0.099024105774275 0.106264031508713 0.103613428790639 0.121347230368024 1 1|0 +|/ 4798998 4800012 4799545.8 4797355 4800280 + gene protein_coding_gene FALSE TRUE AT1G14000.1 protein kinase family protein / ankyrin repeat family protein similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G58760.1); similar to putative ankyrin-kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC79897.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06431.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.319581512571891 3.71375695263225 0.00543617981604133 1 4.88139227056982 19.2411003728181 0.319581512571891 0.0770454622169841
AT3G48460_at 6.61249345178127 6.44389720180877 7.19293667090377 7.50048045463138 7.14323574268267 7.85707383053622 9.87025012220955 9.87901028951582 8.18698316261893 9.3739418790622 8.53816937832285 8.76676000215085 8.8432601026755 8.6449595605256 8.50131673907753 9.30868483855666 9.39997180917678 8.73089296801886 9.22737986288404 0.173731068067865 0.166691916332949 0.167548606643601 0.170858548640251 0.166318719351955 0.158273923247788 0.157444089849551 0.156673554883669 0.165564550018764 0.156691611746960 0.164129955960406 0.154937642820491 0.165670417400132 0.159078383965876 0.157116332306130 0.161440168412929 0.160711098419874 0.157741694636417 0.154937642820491 3 3 + 17961043 17962010 17961703.818 17960430 17962180 + gene protein_coding_gene FALSE TRUE AT3G48460.1 GDSL-motif lipase/hydrolase family protein similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28650.1); similar to Os03g0844600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051872.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT44175.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.432832067507825 -3.71133603220344 0.00545571809337531 1 4.87815030223633 16.6980156670094 -0.432832067507825 0.137646403611935
AT1G08680_at 6.03663955396797 6.37530275952322 6.24002641980875 6.2148585980966 7.56544092746296 7.06364537324461 6.34531733428826 5.88490466746176 5.15027696502698 5.24732627913073 5.30439246341302 5.04060786790925 5.59312640226508 5.44688179332483 5.38912769405377 5.50576710524899 5.68998769224412 5.50622888119515 5.21535872574512 0.171529650246190 0.167675445982867 0.168363330489667 0.171262255001676 0.177670533288765 0.176842396865272 0.170019748648697 0.166744003688789 0.173935665451643 0.169158926831683 0.168575586016927 0.168905277262057 0.167218300486203 0.172151938125405 0.170810368900580 0.167387051575389 0.171227403946939 0.175759296344424 0.175891872212008 1 1|0 +|/ 2762868 2768351 2765905.4 2762593 2768970 + gene protein_coding_gene FALSE TRUE AT1G08680.1|AT1G08680.2|AT1G08680.3 ZIGA4 (ARF GAP-LIKE ZINC FINGER-CONTAINING PROTEIN ZIGA4); DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. AGD14 belongs to the class 4, together with AGD15. similar to human Rev interacting-like protein-related / hRIP protein-related [Arabidopsis thaliana] (TAIR:AT4G13350.2); similar to GTPase activating protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95689.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.420323040832713 3.7097255456766 0.00546875696185799 1 4.875993123613 11.7851847762773 0.420323040832713 0.131692755814120
AT1G48050_at 5.46848018888109 5.47404052081994 4.79503111564179 4.904409387134 4.84377147764891 4.37119822852582 5.64417322759768 5.20131027482254 4.84630634652332 4.49360939736009 4.54486839887683 5.37338595231803 4.31606753317393 5.02120641015737 4.77930657066479 4.75905370408157 4.82277808430441 4.31087338919948 5.03171383509859 0.237868388897645 0.234542111366843 0.235422903423620 0.233537456327848 0.237361831234387 0.244533907694296 0.234382986150377 0.243387878948563 0.255069399050717 0.246701672211516 0.236464015735453 0.234228930283605 0.237817079456875 0.24086084125819 0.234274387845958 0.233537456327848 0.250409996300578 0.238629627677445 0.240619136640513 1 1|0 +|/ 17729712 17730475 17730074.8 17727121 17730712 + gene protein_coding_gene FALSE TRUE AT1G48050.1 ATKU80/KU80 (Arabidopsis thaliana Ku80 homolog); double-stranded DNA binding / protein binding Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation. similar to Ku70/Ku80, N-terminal alpha/beta; Ku80 antigen [Medicago truncatula] (GB:ABE92389.1); similar to KAP-2 [Medicago truncatula] (GB:AAL87543.1); similar to KAP-2 [Phaseolus vulgaris] (GB:AAL87544.1); contains InterPro domain Ku; (InterPro:IPR006164); contains InterPro domain Ku80 antigen; (InterPro:IPR011210); contains InterPro domain Ku70/Ku80, N-terminal alpha/beta; (InterPro:IPR005161); contains InterPro domain Ku70/Ku80 C-terminal arm; (InterPro:IPR005160) -0.383999594219813 -3.7067848829884 0.00549265065494743 1 4.87205319971952 9.8535446518045 -0.383999594219813 0.113670385764857
AT1G05180_at 8.42982935708178 8.66526870583177 8.28281272281395 8.183035997119 8.5201107935706 8.10169992144733 8.19963632955401 8.05429069440023 8.22949554705011 7.31008826087563 7.03363066560376 6.99722379719285 6.48085036432525 7.20914615973543 6.84447481370154 7.25430460244824 7.41954711992245 7.59742515819594 7.6037129770398 0.173596670766215 0.173596670766215 0.180536671087112 0.180614493947924 0.17873038320413 0.179906604032617 0.182914011886442 0.176509570126004 0.178326151539713 0.177353299445220 0.179583729468195 0.177721998685712 0.181598996392369 0.18458472209184 0.184060745973304 0.180959859454347 0.180254199936092 0.176152655578360 0.173596670766215 1 1|0 -|/ 1498389 1499501 1498704.4 1498113 1501823 - gene protein_coding_gene FALSE TRUE AT1G05180.1|AT1G05180.2|AT1G05180.3 AXR1 (AUXIN RESISTANT 1); small protein activating enzyme Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves. Identical to NEDD8-activating enzyme E1 regulatory subunit (Auxin-resistance protein AXR1) (AXR1) [Arabidopsis Thaliana] (GB:P42744); similar to auxin-resistance protein, putative [Arabidopsis thaliana] (TAIR:AT2G32410.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); similar to putative auxin-resistance protein [Populus trichocarpa] (GB:ABG37639.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594)|Identical to NEDD8-activating enzyme E1 regulatory subunit (Auxin-resistance protein AXR1) (AXR1) [Arabidopsis Thaliana] (GB:P42744); similar to auxin-resistance protein, putative [Arabidopsis thaliana] (TAIR:AT2G32410.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036)|similar to auxin-resistance protein, putative [Arabidopsis thaliana] (TAIR:AT2G32410.1); similar to Os03g0820100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051717.1); similar to putative ubiquitin-activating enzyme (alternative splicing product) [Oryza sativa (japonica cultivar-group)] (GB:AAO65877.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036) -0.337599169746862 -3.70363034870474 0.00551840534172252 1 4.86782524999230 15.7140893636253 -0.337599169746862 0.0885086371027143
AT4G05420_at 7.83195218212773 8.09816575147027 7.77358521656749 7.91225897399144 8.10924732691865 8.2720874022548 7.44521869842429 8.02328783285452 6.124945033386 7.4772357489511 7.9823571857344 7.8059918164595 7.55411230031384 7.86927715060214 7.07797639920737 8.05125122040328 7.77101801070598 7.18674781057949 7.55492091246964 0.176182597466731 0.174254809126209 0.187867949805647 0.182545540688017 0.178148498760825 0.188098437920216 0.179884462084733 0.177762617478398 0.202210098689554 0.186707058957872 0.177526403170473 0.181367519798987 0.190500432465105 0.179333832280713 0.177453090009912 0.173974295506404 0.184137262192701 0.184444350315881 0.183511868336266 4 4 + 2752088 2752546 2752277.818 2746118 2752940 + gene protein_coding_gene FALSE TRUE AT4G05420.1 DDB1A (UV-damaged DNA-binding protein 1A); DNA binding Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis. Identical to DNA damage-binding protein 1a (UV-damaged DNA-binding protein 1a) (DDB1a) (DDB1A) [Arabidopsis Thaliana] (GB:Q9M0V3;GB:Q8VY31); similar to DDB1B (DAMAGED DNA BINDING PROTEIN 1 B) [Arabidopsis thaliana] (TAIR:AT4G21100.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (GB:Q6E7D1); similar to UV-damaged DNA binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAB20761.1); similar to DNA damage-binding protein 1 (UV-damaged DNA-binding protein 1) (High pigmentation protein 1) (GB:Q6QNU4); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871) 0.388556434431199 3.7034961583542 0.00551950375521787 1 4.86764536383796 15.2905797822526 0.388556434431199 0.116189278864930
AT4G16150_at 7.76702491050043 7.96260261727773 8.2133434154526 8.0490847618903 8.46219280135647 7.98220467379123 7.82504614544708 7.3210114176751 8.0936670524031 7.75539114239517 8.28257925148794 8.40966362866713 8.30774585642182 8.1666076544315 8.10658824724254 8.35745936435573 8.52018613541376 8.08902676949077 7.8884565694517 0.174543771253182 0.173393664623864 0.167238549863037 0.167238549863037 0.173679555762766 0.176332796203185 0.167238549863037 0.173735884071861 0.185228279850160 0.186753378468133 0.167238549863037 0.167238549863037 0.169298175040361 0.171897296307872 0.167238549863037 0.167238549863037 0.173949507346752 0.176888136267167 0.174429102849241 4 4 + 9152344 9152820 9152604.286 9148239 9153064 + gene protein_coding_gene FALSE TRUE AT4G16150.1 calmodulin-binding protein similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT3G16940.1); similar to IQ calmodulin-binding re (GB:ABE83204.1); similar to CaM-binding transcription factor [Oryza sativa] (GB:AAQ07306.1); similar to Calmodulin-binding transcription activator 5 (Signal-responsive protein 6) (Ethylene-induced calmodulin-binding protein f) (EICBP.f) (GB:O23463); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.412631166209905 3.70288312314111 0.00552452469962928 1 4.86682353672634 16.0440573603516 0.412631166209905 0.128302400273429
AT1G22850_at 10.1706135165879 10.1698281901774 10.4337734408058 10.3660148360558 10.4964166081710 10.0762771153598 11.4771285649699 11.4431787461598 11.1034295250080 11.2134998347031 11.0785257602045 10.889006125064 11.0182591961267 11.1683175478283 10.8514641590463 11.1465578964125 10.8738458964149 10.9284368749658 11.1317592170384 0.0825005588723127 0.0821406934886065 0.0816014314032945 0.0828513778202856 0.080065778212346 0.0895374555928189 0.0807988174252618 0.0806314335475753 0.0866985529863961 0.0834622511855747 0.0819725184585425 0.0828575145227587 0.0815278397294665 0.0823451822863879 0.0824059640369877 0.0796236041373009 0.086257216039382 0.0838863831571442 0.0808510408135515 1 1|0 -|/ 8080929 8082205 8081693.778 8080471 8082864 - gene protein_coding_gene FALSE TRUE AT1G22850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19070.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54429.1); similar to Os01g0884900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045020.1); contains domain UNCHARACTERIZED (PTHR12677) -0.313663965642151 -3.70229774054826 0.0055293236850166 1 4.86603872648925 21.6510861477481 -0.313663965642151 0.073880688092312
AT3G16060_at 6.1683296666339 6.37543632106605 5.93074574900375 5.8194139069808 6.56255063014683 6.20133762980083 7.31670584917231 7.13100247780343 6.68276165639584 6.7833800455702 6.74618336459113 6.86656412194308 6.42026874836818 6.64164036941022 6.92439837262947 6.52033497481603 6.34892135697168 7.14623504553336 6.73293450692006 0.186233924062040 0.175840581646931 0.176420853496396 0.170390463780693 0.173053348180404 0.188609511091291 0.179026171554261 0.176940323284378 0.188431574475093 0.169633019110694 0.175504949873751 0.185136457087941 0.176456144491519 0.184738802128466 0.190196642384398 0.173410592592825 0.181569220130849 0.179707597881576 0.175914294650593 3 3 + 5450474 5451175 5450804.455 5447349 5451533 + gene protein_coding_gene FALSE TRUE AT3G16060.1 kinesin motor family protein similar to ATKINESIN-13A/KINESIN-13A, microtubule motor [Arabidopsis thaliana] (TAIR:AT3G16630.2); similar to BY-2 kinesin-like protein 10 [Nicotiana tabacum] (GB:BAB40710.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.325281854182505 -3.70224655020182 0.00552974355542839 1 4.86597009415716 13.1556121274485 -0.325281854182505 0.081215665338737
AT1G17730_at 8.3222793757149 8.77998620063656 8.66679307300268 8.6936750646876 9.09818241169285 8.78152363267775 8.69386656565203 8.8383243754459 8.22809210560181 8.3743806960193 9.15420303290712 9.10953722720488 8.9610593291079 9.08594772309267 8.73467676966109 8.94511254387747 8.5626231562457 8.59032362759663 8.39003341142898 0.158858326715675 0.163681028512801 0.163441308252004 0.17081021822825 0.168006032218750 0.168412343667754 0.166259137450878 0.170639506905031 0.192638331363249 0.167367395557669 0.161790195057494 0.158081859150251 0.158060279462524 0.168998318022812 0.167379105529625 0.157886871207132 0.173725151062273 0.17879499742578 0.164973170448882 1 1 + 6099360 6100105 6099632.818 6099082 6100308 + gene protein_coding_gene FALSE TRUE AT1G17730.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G73030.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.356764719007259 3.69864766631758 0.00555934707882884 1 4.86114396171231 17.3462142527196 0.356764719007259 0.0996168275119018
AT2G41870_at 8.82739025559974 8.90219089646032 9.49129514523683 9.28581277469189 9.38205420596288 9.48300071938593 10.2142619445703 10.1988893863055 8.8166539783693 9.3243010787271 9.72965861175343 9.82853060329944 9.822346124513 9.77393004277694 9.5101538696971 9.70768545025392 9.87475555864173 9.53792641194035 9.02149358105495 0.107285641348060 0.112014994846331 0.106770097458046 0.110738586273719 0.107873766685325 0.113005993060828 0.110438480106247 0.110506832302087 0.119952045356501 0.111389328475002 0.108424577812607 0.106770097458046 0.108146081168765 0.112110236341777 0.106770097458046 0.106770220810077 0.110021731201892 0.119504789875441 0.119508589482941 2 2 - 17478232 17479323 17479026.909 17477944 17480014 - gene protein_coding_gene FALSE TRUE AT2G41870.1 remorin family protein similar to remorin family protein [Arabidopsis thaliana] (TAIR:AT3G57540.1); similar to remorin-related [Musa acuminata] (GB:ABF70164.1); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.271915689322234 3.69723490988561 0.00557101398750753 1 4.85924890100825 18.8617483561066 0.271915689322234 0.0417648903048191
AT1G31930_at 6.54003712955898 6.65893088402685 6.29411418685776 6.65178463734582 7.26398824540657 7.18253841676696 7.02191633549364 6.55565647851088 6.84317274704882 6.29846711407736 7.49808316586794 7.09630206736777 6.7897774244214 7.1316005948722 7.03348544706874 6.9435970369048 7.45351112654558 6.55827537779364 6.3138007541974 0.179023992469854 0.175369205081459 0.179463764264850 0.181871585261289 0.18917765978256 0.192873909199082 0.176702834381882 0.190894152235787 0.193578861247624 0.178166251494628 0.186264344890158 0.181184248912133 0.177259059132033 0.184901419499194 0.180970242452242 0.182735687086779 0.181867628867307 0.180991937198001 0.187220159436240 1 0|1 /|+ 11468421 11468764 11468608 11464994 11469145 + gene protein_coding_gene FALSE TRUE AT1G31930.1|AT1G31930.2 XLG3 (extra-large GTP-binding protein 3); signal transducer similar to XLG1 (EXTRA-LARGE G-PROTEIN 1), signal transducer [Arabidopsis thaliana] (TAIR:AT2G23460.1); similar to G-protein alpha subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91995.1); similar to extra-large guanine nucleotide binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99166.1); similar to Os11g0206700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067461.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) 0.365951661513713 3.69674487335594 0.00557506690258953 1 4.85859149830535 13.5452337401858 0.365951661513713 0.104708254851355
AT1G49890_at 5.56972886951046 6.49950124013738 4.68538096938878 5.12125059939309 5.32888938259781 5.58801870631452 6.16388895954044 6.57782063347367 5.97948385353587 5.51320933701782 5.53564244754764 5.8358907865382 5.89114494310479 5.91952530769609 5.93675432722946 6.09013214891363 5.24155008739348 5.62610793065081 6.08491414399579 0.213237604591999 0.207627746778973 0.216145943690265 0.206862616725131 0.209960289672148 0.209093792617864 0.212926982402156 0.206106437375326 0.206417859293856 0.207687166725326 0.205670845327416 0.204644254885486 0.204519385494143 0.210685716902810 0.217133783648463 0.203413506587768 0.209104166097531 0.209443706625825 0.208216623934175 1 1 + 18475334 18477105 18476186.091 18473743 18477491 + gene protein_coding_gene FALSE TRUE AT1G49890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19570.2); similar to Protein of unknown function DUF566 [Medicago truncatula] (GB:ABE79541.1); contains InterPro domain Protein of unknown function DUF566; (InterPro:IPR007573) -0.560729479353747 -3.69585385508633 0.00558244421092453 1 4.85739606905744 11.5012078911616 -0.560729479353747 0.196776655167877
AT1G20200_at 9.1773594492318 9.19073816945136 9.54363215214342 9.63190722907496 9.36865600672669 9.22878846376464 9.28015822237781 9.15793579349398 8.223159084019 8.46950026202474 8.76181481714196 8.67131238012286 8.86487100099448 8.46691062977395 8.8584453115363 8.8062666077819 8.6175578685458 8.53793344003378 8.5303128435198 0.113882048541147 0.113574079389804 0.117692300574968 0.115190019201838 0.113574079389804 0.114810704555248 0.115966689311709 0.117236618600240 0.133952953091506 0.117202908159928 0.113805282357062 0.116012643562311 0.116939061704799 0.129743957852881 0.113574079389804 0.114098363308808 0.122073768598145 0.129740420075226 0.115881197477321 1 1 - 7001496 7002310 7001765.091 7001192 7004409 - gene protein_coding_gene FALSE TRUE AT1G20200.1 EMB2719 (EMBRYO DEFECTIVE 2719); binding Identical to Probable 26S proteasome non-ATPase regulatory subunit 3a (26S proteasome subunit S3-a) [Arabidopsis Thaliana] (GB:Q9LNU4;GB:Q8L852); similar to 26S proteasome regulatory subunit S3, putative (RPN3) [Arabidopsis thaliana] (TAIR:AT1G75990.1); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:P93768); similar to nuclear antigen 21D7 - carrot (GB:JQ2257); similar to Probable 26S proteasome non-ATPase regulatory subunit 3 (26S proteasome subunit S3) (Nuclear antigen 21D7) (GB:Q06364); contains InterPro domain 26S proteasome regulatory subunit, C-terminal; (InterPro:IPR013586); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.266089832379445 3.69568272384463 0.00558386230096963 1 4.85716645794934 17.8752951375394 0.266089832379445 0.0356646857598005
AT1G78580_at 5.69702945945634 6.00341423316212 5.1067639235705 5.33183326428505 5.64971117235724 5.83615210043689 7.04100637708443 6.96675805464927 6.4421489304471 6.45973776166339 6.94878632312071 7.68367536165227 7.13737231922185 6.79605062406204 7.59008118097091 7.28824955792009 6.60386800973228 6.63525595088196 7.39938844040165 0.214103539957787 0.212446995081463 0.217973723068700 0.219483768141283 0.212670425037796 0.222348791454237 0.212446995081463 0.212446995081463 0.230571088820421 0.220029133394977 0.212446995081463 0.217467374971308 0.224851649015032 0.21896368797391 0.218183678363250 0.217207989829155 0.225976841785313 0.217357386867851 0.219326842332382 1 1 - 29557398 29558076 29557687.455 29557233 29565805 - gene protein_coding_gene FALSE TRUE AT1G78580.1 ATTPS1 (TREHALOSE-6-PHOSPHATE SYNTHASE); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain but no trehalose phosphatase (TPP)-like domain. ATTPS1 is able to complement yeast tps1 mutants in vivo. The gene product modulates cell growth but not cell differentiation by determining cell wall deposition and cell division. similar to ATTPS2 (Arabidopsis thaliana trehalose-phosphatase/synthase 2), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G16980.1); similar to ATTPS3 (Arabidopsis thaliana trehalose-phosphatase/synthase 3), alpha,alpha-trehalose-phosphate synthase (UDP-forming) [Arabidopsis thaliana] (TAIR:AT1G17000.1); similar to ATTPS4 (Arabidopsis thaliana trehalose phosphatase/synthase 4), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G27550.1); similar to trehalose-6-phosphate synthase, putative [Musa balbisiana] (GB:ABF70084.1); similar to SL-TPS/P [Sela (GB:AAD00829.1); similar to Trehalose-6-phosphate synthase component TPS1 and related subunits (ISS) [Ostreococcus tauri] (GB:CAL50152.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830); contains InterPro domain Alpha,alpha-trehalose-phosphate synthase; (InterPro:IPR012766) -0.313805605408871 -3.69466060811946 0.00559234009157874 1 4.85579496611610 12.8803381365166 -0.313805605408871 0.074393555344069
AT1G22985_at 5.38815529705916 5.35405352353474 5.62852226183978 5.79819275515712 6.09933767860422 6.41570736693662 4.6977253894069 5.09200033640064 4.92930332421287 5.44088592189712 5.28486881417118 4.79953318890908 5.37282099537582 4.98244378431459 4.94513584417593 5.31987439192392 5.28476720938646 4.86058729201902 5.44478553728264 0.198304195203048 0.195292618234670 0.189936938598716 0.199676115830039 0.197988828377406 0.201290430013787 0.196505099277124 0.193729220711675 0.204009914453866 0.193729430355796 0.198438640377798 0.189978241299219 0.192173166866642 0.207906281630961 0.195722893011879 0.190863659073857 0.203228639813116 0.192308704012965 0.195815525549307 1 1 - 8135351 8135756 8135532 8135202 8135909 - gene protein_coding_gene FALSE TRUE AT1G22985.1 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G71130.1); similar to TSI1 [Nicotiana tabacum] (GB:AAC14323.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.343526028968847 3.69360769810651 0.00560108758290992 1 4.85438198681626 10.7481679267001 0.343526028968847 0.0924658648868222
AT2G23090_at 11.7112943566242 11.8518284609467 12.0195471600296 11.9982665234490 11.9837155500041 12.1034941580757 11.5198402864581 11.7340906204050 11.7396174464936 11.7731953534282 11.9992039190505 11.9833226573839 11.9951967516153 12.0550197044767 11.8957363918009 11.963324720483 12.0636954134381 11.9667108466297 11.7472359947935 0.0636415584175524 0.0629430927657881 0.0669898717248525 0.0679430634737406 0.0648227529135136 0.0647693937275869 0.0629430927657881 0.0636417358965705 0.0693583650585967 0.0632664421105241 0.0663291935567484 0.0634368409091368 0.0644978722909374 0.0647323387898178 0.065960115029785 0.0631706900701101 0.0660679451639333 0.0629430927657881 0.0659658129793872 2 2|0 -|/ 9836755 9837320 9836992.9 9836530 9837490 - gene protein_coding_gene FALSE TRUE AT2G23090.1 similar to hypothetical protein [Cicer arietinum] (GB:CAA10129.1) 0.279459559576187 3.6932140164227 0.00560436198631744 1 4.85385363213273 23.7370725889231 0.279459559576187 0.0490855820429832
AT3G09250_at 7.74361616491856 8.00370902876018 8.02947750752967 8.13983127584521 8.36010108246746 7.88572739740403 8.26151445744383 7.8578111782052 6.19376076981125 7.39732311837311 7.17822766500093 7.54480229209653 7.06926231847102 7.4662295782714 7.86164129887316 7.52793746132844 7.67159449601193 7.26318421761013 6.81382371677363 0.202740174542586 0.196325550753614 0.213533603100533 0.211026211545065 0.205019753091804 0.203332816039641 0.200296382289038 0.205603648361333 0.216432289851419 0.218920389657798 0.207803458522142 0.197708654609429 0.203735245861113 0.209103707740885 0.206630640732243 0.200144900162769 0.219201460285980 0.205214148316374 0.196325550753614 3 3 + 2839587 2840276 2839982.818 2839007 2840589 + gene protein_coding_gene FALSE TRUE AT3G09250.1 DNA binding / nuclease similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G10925.2); similar to Os02g0788500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048348.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19863.1); contains InterPro domain UvrB/UvrC protein; (InterPro:IPR001943) 0.391672828059128 3.69262975418019 0.00560922526645646 1 4.8530694582533 15.1599714037104 0.391672828059128 0.118366478284009
AT2G02080_at 8.90064280544652 9.07165674859041 9.1845724460841 9.06809141035127 10.0594244621480 9.82196219128987 9.15402179349832 9.1195044916557 9.42126937671027 8.59064675173805 9.46359505330436 9.08316852783878 9.27561152513377 9.27675216941757 8.96069163149804 8.90733941396846 8.73417493998647 9.03920116708743 8.96437665756552 0.106866172980592 0.102908905912750 0.108454067684761 0.104213277856634 0.108917007912983 0.107214481083165 0.108784589212633 0.107442956315644 0.113174107995419 0.106398771226644 0.107031648069570 0.100303496919992 0.103892755608048 0.110978004168145 0.110942842098686 0.101700851739026 0.108795722768525 0.10912182399046 0.107497366136512 2 2 - 518378 518893 518674.091 518158 521706 - gene protein_coding_gene FALSE TRUE AT2G02080.1 ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4); transcription factor similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G14580.1); similar to Os08g0554400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062466.1); similar to INDETERMINATE-related protein 1 [Zea mays] (GB:AAV51393.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.286262687930994 3.69252850241461 0.00561006852068072 1 4.85293355679564 18.3398167430667 0.286262687930994 0.0548322206160058
AT1G19670_at 10.235612436586 10.2308162890736 8.9789080333193 9.33057144033063 9.31749461630767 9.06037600720083 9.82979231804528 9.94987499930363 8.79327121343773 9.31132884918129 9.20116140558123 9.41533647201288 9.12122958237183 9.07931898657369 9.6115818782958 10.0960872076285 8.50713934410857 8.9909037213482 8.90101212443674 0.0994778532011153 0.0934424922850632 0.104550969089374 0.0971278228816333 0.096962246505933 0.0981142510409052 0.0957243437090363 0.0955261112769288 0.107038567089613 0.0934424922850632 0.0954856495507427 0.0934424922850632 0.0976232668118653 0.0974888534297071 0.0967304512440825 0.0947217252394538 0.111955282371358 0.101278000321365 0.0970674954779516 1 1 - 6803787 6804315 6804099.545 6803602 6805035 - gene protein_coding_gene FALSE TRUE AT1G19670.1 ATCLH1 (CORONATINE-INDUCED PROTEIN 1) Chlorophyllase is the first enzyme involved in chlorophyll degradation. It catalyzes the hydrolysis of the ester bond to yield chlorophyllide and phytol. AtCLH1 lacks a typical signal sequence for the chloroplast. Its expression is induced rapidly by methyljasmonate, a known promoter of senescence and chlorophyll degradation. Identical to Chlorophyllase-1 (EC 3.1.1.14) (AtCLH1) (Chlorophyll-chlorophyllido hydrolase 1) (Chlase 1) (Coronatine-induced protein 1) (CORI1) (CLH1) [Arabidopsis Thaliana] (GB:O22527); similar to ATCLH2 (Chlorophyll-chlorophyllido hydrolase 2) [Arabidopsis thaliana] (TAIR:AT5G43860.1); similar to chlorophyllase 1 [Brassica oleracea] (GB:AAN51933.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Chlorophyllase; (InterPro:IPR010821) -0.319356195370514 -3.6898481087233 0.00563244059834283 1 4.84933532718683 18.7440385444002 -0.319356195370514 0.0782046230919398
AT4G08790_at 4.63018558826682 4.92570115233161 5.3692952029282 5.3207926055482 5.48281826432601 5.91765615516342 5.05735512906464 5.17205276251487 4.05642198860797 3.92745181991124 4.13857571550352 4.15048858760227 4.82218262576928 4.16516221255086 4.34534108541008 4.60216610543119 4.76147016218583 4.1078972204072 4.83529070196976 0.190951226650965 0.190511369549654 0.19530254205034 0.198122592529834 0.195948629173321 0.202759164932521 0.194150526880797 0.190949114338626 0.197180875558685 0.196814654712096 0.189187183424216 0.199473052682663 0.189187183424216 0.196940414315931 0.190395249379931 0.190381997192013 0.194861232058973 0.197204485014162 0.189187183424216 4 4|0 -|/ 5608656 5609843 5609190.375 5608237 5611212 - gene protein_coding_gene FALSE TRUE AT4G08790.1 nitrilase, putative similar to carbon-nitrogen hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G12040.1); similar to Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Medicago truncatula] (GB:ABE91350.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010) 0.344961263237424 3.68953925565457 0.00563502453523059 1 4.84892064434134 9.56433975811156 0.344961263237424 0.0935010183116018
AT3G02520_at 9.67866985150257 9.80731250148704 9.8601747654751 10.0202653078411 9.73585881265469 9.47546256149307 9.05194832263394 9.3359463167677 8.72916016880606 8.64437094358287 8.98620366809896 9.09101465452538 8.95520905358455 9.03757135352377 9.08636877517133 8.91272177113927 8.71851172427732 8.90792959608264 8.53477767697285 0.130858536593027 0.13029972990335 0.131199022927781 0.130658387528133 0.130334120450931 0.129663170700641 0.130992040279096 0.130588698057768 0.134155932538853 0.137295409008513 0.12849029526833 0.125906578332671 0.130411057524176 0.136423988834666 0.137098727117305 0.128413493856320 0.139885786771465 0.133486361470690 0.132470207658770 3 3|0 -|/ 527000 527588 527276.7 526444 528320 - gene protein_coding_gene FALSE TRUE AT3G02520.1 GRF7 (General regulatory factor 7); protein phosphorylated amino acid binding Encodes GF14 ν, a 14-3-3 protein isoform (14-3-3ν). Identical to 14-3-3-like protein GF14 nu (General regulatory factor 7) (GRF7) [Arabidopsis Thaliana] (GB:Q96300); similar to GRF5 (GENERAL REGULATORY FACTOR 5), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT5G16050.1); similar to 14-3-3 protein [Manihot esculenta] (GB:AAY67798.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) 0.315154754265664 3.68931492114926 0.00563690215852225 1 4.84861943156099 18.4197269321507 0.315154754265664 0.0755595151494262
AT1G22640_at 7.33098487752414 7.18340435221179 7.07817950647091 7.43254779532396 8.47521672328751 8.15753632437765 7.34555136092604 7.1985060205363 6.83306321004462 7.1088933684836 7.56204585403944 7.35430342459621 7.5296171509861 7.40046453251804 6.56141039467718 7.12162626149105 7.8792186638417 7.13254184034466 7.5432415351036 0.179201109184685 0.165399550984817 0.173786202867531 0.165399550984817 0.173591751580712 0.183438676330065 0.165399550984817 0.165399550984817 0.184867795568877 0.176891109833356 0.168775300842788 0.175472780167379 0.17624486069305 0.176326258983824 0.175488644487452 0.166164172639805 0.167836148166603 0.176682454470713 0.176885600833141 1 1 + 8006593 8007164 8006975.182 8006184 8007417 + gene protein_coding_gene FALSE TRUE AT1G22640.1 MYB3 (myb domain protein 3); DNA binding / transcription factor MYB-type transcription factor (MYB3) that represses phenylpropanoid biosynthesis gene expression similar to ATMYB6 (myb domain protein 6, myb domain protein 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G09460.1); similar to MYB1 [Gossypium hirsutum] (GB:AAA33067.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.338589622666648 3.68825339699522 0.00564579585347257 1 4.84719402437769 14.7649339800102 0.338589622666648 0.0899051979162558
AT1G28280_at 6.3585447651475 6.86644925760637 6.7285547780605 6.97026747848852 6.59221979003221 6.33360738309715 5.6374788676384 6.08961746973231 5.88728041678794 5.10908183830792 6.00440352955513 5.951221327093 5.77032139237959 6.26346272062985 5.71067986958092 6.12619568943221 5.34885286736079 5.52129492039027 5.24998815045698 0.203114586333105 0.197819491671719 0.201191162878108 0.202788726046740 0.199434496243496 0.222540688756012 0.197112402672447 0.197112402672447 0.205332776749343 0.201116356363374 0.19727088166601 0.202647472277941 0.207349361127817 0.201348132164160 0.205565800469341 0.199040379191203 0.208108603317992 0.20130917088997 0.211384705688252 1 1 - 9886651 9886948 9886792 9886064 9887465 - gene protein_coding_gene FALSE TRUE AT1G28280.1 VQ motif-containing protein similar to VQ motif-containing protein [Arabidopsis thaliana] (TAIR:AT2G33780.1); similar to DNA-binding WRKY; VQ [Medicago truncatula] (GB:ABD32365.1); contains InterPro domain VQ; (InterPro:IPR008889) 0.419871835878445 3.68817238762922 0.00564647517976503 1 4.8470852385061 12.0733445610939 0.419871835878445 0.132666655202652
AT1G67300_at 6.58335079326643 6.81399889173067 6.95669784480584 6.79910366053061 7.20868191448252 6.42506576245743 6.84933514747689 6.60478865587966 5.23356138412722 6.17864626916041 6.86461582363432 6.9488047088791 6.55954103021614 6.57261207435463 5.88976391605926 6.57543110257545 6.42239835191939 6.5545114746613 5.89983756620214 0.265799595778526 0.25733751075901 0.267796793856255 0.258174828720529 0.265933803736584 0.265319496931282 0.283188591991555 0.253593050504343 0.269846565165969 0.260117555666328 0.271965424599948 0.263291793674934 0.258342130500765 0.284556799931393 0.255260020844047 0.262250387127944 0.265126332390098 0.266078946199378 0.263429000900583 1 1|0 -|/ 25197497 25198365 25197858.6 25197367 25200752 - gene protein_coding_gene FALSE TRUE AT1G67300.1|AT1G67300.2 hexose transporter, putative Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medicago truncatula] (GB:ABE93220.1); similar to putative sugar transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD21807.1); similar to sugar transporter [Citrus unshiu] (GB:AAN86062.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|Identical to Probable plastidic glucose transporter 2 [Arabidopsis Thaliana] (GB:Q9FYG3); similar to SGB1, carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G79820.2); similar to Sugar transporter [Medicago truncatula] (GB:ABE93220.1); similar to sugar transporter [Citrus unshiu] (GB:AAN86062.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.456148496969107 3.68751439003191 0.0056519962130026 1 4.84620158947739 12.9396986088874 0.456148496969107 0.150058625035534
AT4G35790_at 8.2904967577237 8.47804655320228 7.78476738354126 7.64806574829204 9.03397847581277 8.27571384803954 7.72232392468654 7.644474154937 7.48579500313429 7.41086652473637 8.38169210473526 8.3282239240428 8.68332609239471 8.3215709036832 7.90040302038105 7.8514092057244 7.1529561267235 8.3252299246088 7.32980621090772 0.207999847862175 0.204762042314260 0.208897965713502 0.209460749726267 0.20373568923207 0.211417425708861 0.213360470037046 0.202266080753009 0.228097979131714 0.206419322785974 0.202266080753009 0.202266080753009 0.202266080753009 0.208377258700036 0.209629540923742 0.204821136427220 0.247522356428155 0.209627556412518 0.205240812521887 4 4|0 -|/ 16955778 16956760 16956229.4 16955538 16960174 - gene protein_coding_gene FALSE TRUE AT4G35790.1|AT4G35790.2|AT4G35790.3 ATPLDDELTA (Arabidopsis thaliana phospholipase D delta); phospholipase D Encodes a protein with phospholipase D activity. Involved in phospolipase metabolism. Mutants are affected in hydrogen peroxide mediated cell death. Identical to Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD delta) (PLDDELTA) [Arabidopsis Thaliana] (GB:Q9C5Y0;GB:Q944P8;GB:Q947R2;GB:Q9FS18;GB:Q9SZS7); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D delta isoform 1b [Gossypium hirsutum] (GB:AAN05432.1); similar to phospholipase D delta isoform [Gossypium hirsutum] (GB:AAN34820.1); similar to phospholipase D delta isoform 1a [Gossypium hirsutum] (GB:AAN05433.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973)|Identical to Phospholipase D delta (EC 3.1.4.4) (AtPLDdelta) (PLD delta) (PLDDELTA) [Arabidopsis Thaliana] (GB:Q9C5Y0;GB:Q944P8;GB:Q947R2;GB:Q9FS18;GB:Q9SZS7); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D delta isoform 1b [Gossypium hirsutum] (GB:AAN05432.1); similar to phospholipase D delta isoform [Gossypium hirsutum] (GB:AAN34820.1); similar to phospholipase D delta isoform 1a [Gossypium hirsutum] (GB:AAN05433.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.430537424738969 3.68733514116134 0.00565350122140793 1 4.84596085816744 15.8731953519691 0.430537424738969 0.137889723217816
AT3G55560_at 5.6357051298093 5.93019202202794 5.2821868436693 5.36317815377751 6.17253896288625 6.28197936825611 4.37851170456082 4.73018622628541 4.50868964926247 5.14395267260424 5.00326157559658 4.71865542688568 5.30773636226082 5.38176569619037 4.4927958232786 4.43726160780854 5.2755283302518 4.85302962991321 5.00880782626054 0.232627760754614 0.233877522540614 0.235309689000249 0.230694274624779 0.235188632733527 0.246971554804235 0.236724647409039 0.232886757314108 0.248792305894682 0.232405748046171 0.230694274624779 0.233634634335752 0.235055627368026 0.235586066152821 0.233398337026008 0.235653344015535 0.230694274624779 0.2360143821152 0.230694274624779 3 3 - 20615953 20616456 20616226.636 20615595 20617359 - gene protein_coding_gene FALSE TRUE AT3G55560.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G14465.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE83497.1); similar to Os03g0270000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049682.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175) 0.326463159311936 3.68623219922932 0.00566277109720566 1 4.84447949882911 10.3822619793586 0.326463159311936 0.0828016011056464
AT3G47450_at 5.51861193747275 5.45927487121974 5.52706539512635 5.13034758033047 5.43186792004368 5.1093545197088 6.4782968604088 6.09033172643371 5.48069104397389 5.87529977850877 5.58470100132417 5.98676881837161 5.34974038583059 5.34066015302319 6.11351599771869 5.46640041931368 5.23018032112992 5.18728905047583 5.74671056312669 0.207575663304596 0.208203441122209 0.212288401301981 0.211589325280343 0.202614230879990 0.227914307398142 0.209105537586415 0.211185892982616 0.210287083387572 0.207308359336973 0.209524950504747 0.204494282212795 0.227806760572458 0.207826673496848 0.202614230879990 0.206979583108348 0.220253688340141 0.223563365632612 0.219153718571401 3 3|0 -|/ 17494263 17494948 17494583 17494053 17497332 - gene protein_coding_gene FALSE TRUE AT3G47450.1|AT3G47450.2 ATNOS1/NOS1; nitric-oxide synthase|ATNOS1/NOS1 Encodes a distinct nitric oxide synthase that regulates growth and hormonal signaling in plants. NOS1 also attenuates oxidative stress and reactive oxygen species (ROS). Located in mitochondrion it also seems to be involved in regulating leaf senescence and cell death. AtNOS1 is involved in nitric oxide biosynthesis in response to ABA but not exogenous H2O2. Identical to Nitric-oxide synthase 1 (EC 1.14.13.39) (AtNOS1) (NOS1) [Arabidopsis Thaliana] (GB:Q66GP9;GB:Q9STX8); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT3G57180.1); similar to nitric oxide synthase [Oryza sativa (japonica cultivar-group)] (GB:ABG25042.1); similar to Os02g0104700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045614.1); contains domain GTP-BINDING PROTEIN-RELATED PLANT/BACTERIA (PTHR11089:SF3); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain GTP-BINDING PROTEIN-RELATED (PTHR11089) -0.377731719276373 -3.68570126254001 0.00566723919875019 1 4.84376633256999 11.2097975914772 -0.377731719276373 0.111541450298404
AT1G75190_at 7.24772275218731 7.05317070870166 6.22763742959050 5.91477369374682 6.94035439911838 6.85604360145642 5.850403890143 6.13477366705559 6.28339855040541 6.15919222253113 5.76747060138452 5.74745627553356 6.35934554245251 5.97105700775017 5.25239178480760 5.60432109110383 5.90331469203727 5.5646213571103 6.55927162768954 0.200640312841126 0.19565977421548 0.196733776507278 0.197132323814956 0.201607866569866 0.191554039223989 0.186725825717425 0.197682404755946 0.196198733057745 0.194116496609308 0.188507432892752 0.192395243409051 0.186274045753316 0.187126436242193 0.208783956381479 0.186393862567757 0.195584575202145 0.191402477637605 0.189254008919236 1 1 + 28223288 28223629 28223458.909 28223043 28223888 + gene protein_coding_gene FALSE TRUE AT1G75190.1|AT1G75190.2 |unknown protein similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT4G26630.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42190.1); similar to PREDICTED: hypothetical protein [Mus musculus] (GB:XP_001004948.1)| -0.32476115653171 -3.68456146808304 0.00567684378363832 1 4.84223518955314 12.5807107315322 -0.32476115653171 0.0818511415257689
AT4G26910_at 9.41138235448173 9.30969734607752 9.5410034501499 9.48514691991625 9.29109172410873 8.82602817553143 8.08228084936824 8.12645985578302 8.15498183816635 7.77248621929793 7.82529339339294 8.13773295697221 7.8371139203037 7.8904911763615 7.58118070287997 7.8525676066703 7.73459497119642 8.13194201152423 7.39167884011526 0.173922909866400 0.175851585548979 0.171499290706197 0.172853868237671 0.174687047834693 0.171821292202936 0.176181021134523 0.162601935214411 0.181616481846797 0.173501747189042 0.177593559982137 0.170042297326370 0.170304838055053 0.167790409560091 0.174242176019932 0.164807206759258 0.169781781763222 0.177852275193512 0.181219608668384 4 4|0 -|/ 13520143 13520959 13520342 13519817 13523231 - gene protein_coding_gene FALSE TRUE AT4G26910.1|AT4G26910.2|AT4G26910.3 2-oxoacid dehydrogenase family protein similar to 2-oxoacid dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G55070.1); similar to Os04g0394200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052652.1); similar to putative 2-oxoglutarate dehydrogenase E2 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD22992.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide succinyltransferase; (InterPro:IPR006255); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078)|similar to 2-oxoacid dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G55070.1); similar to Os04g0394200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052652.1); similar to Os02g0514700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046950.1); similar to putative 2-oxoglutarate dehydrogenase E2 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD22992.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide succinyltransferase; (InterPro:IPR006255); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.327089046275884 3.68406166510857 0.005681060864572 1 4.84156371673481 16.8325931135634 0.327089046275884 0.083299477599726
AT3G26670_at 5.82869662978728 6.21548390739389 6.23625187300471 6.54188261366759 6.90141137638963 5.45020729749709 5.14267588022702 5.01003656365611 4.92736068748962 4.73519328563988 5.77281317149639 5.53290599915966 4.99779032989516 5.92150882240816 5.12116558230393 5.61344584542327 4.81594436508164 4.85914002359042 4.19970969802902 0.248185456805791 0.238327716161942 0.241457702814580 0.247729291146866 0.234635030452583 0.256493032621245 0.240705138084119 0.239817276151112 0.265564501208865 0.244651257801824 0.234635030452583 0.234635030452583 0.236416468632165 0.239178694044109 0.241545525737066 0.234635030452583 0.252914359654626 0.23658383915311 0.239966370820571 3 3|0 -|/ 9799473 9800325 9799980 9799223 9802330 - gene protein_coding_gene FALSE TRUE AT3G26670.1|AT3G26670.2|AT3G26670.3 similar to permease-related [Arabidopsis thaliana] (TAIR:AT3G23870.1); similar to hypothetical protein ECU03_0170 [Encephalitozoon cuniculi GB-M1] (GB:NP_597528.1); similar to Os02g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046964.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.720899877620337 3.68212845515656 0.00569740360735211 1 4.83896613926531 10.8908776799392 0.720899877620337 0.266223158215102
AT3G29350_at 9.47418677703253 9.72707313785954 9.85850667425231 9.93432295064128 10.3573460344276 9.73531635683713 9.9379142988701 9.85653770788424 9.26929350673232 9.02508176548636 9.85488745606057 9.83694297805825 9.84456904242308 9.78257759834494 9.42306865878328 9.73905171215906 9.47135217389882 9.57553257234026 9.11122588301131 0.171073234992854 0.162481847462971 0.180687045790392 0.172737501843165 0.169034880666226 0.183529971415851 0.167595120783927 0.163771902974663 0.197423663242119 0.182615191424016 0.170484973843155 0.171592190786908 0.162481847462971 0.178046158471585 0.170863170349620 0.172048450011261 0.178669068897806 0.174443353074280 0.184158637538217 3 3|0 -|/ 11265627 11266616 11266147 11265384 11266769 - gene protein_coding_gene FALSE TRUE AT3G29350.1|AT3G29350.2 AHP2 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 2); histidine phosphotransfer kinase/ signal transducer Encodes AHP2, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function in His-to-Asp phosphorelay signal transduction and as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (APH2), AT5G39340 (APH3), AT3G16360 (APH4), AT1G03430 (APH5) and AT1G80100 (APH6). Identical to Histidine-containing phosphotransfer protein 2 (AHP2) [Arabidopsis Thaliana] (GB:Q9ZNV8;GB:Q3EAX3); similar to AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT5G39340.1); similar to putative histidine-containing phosphotransfer protein 3 [Populus x canadensis] (GB:CAH56501.1); contains InterPro domain Hpt; (InterPro:IPR008207)|Identical to Histidine-containing phosphotransfer protein 2 (AHP2) [Arabidopsis Thaliana] (GB:Q9ZNV8;GB:Q3EAX3); similar to AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3), histidine phosphotransfer kinase [Arabidopsis thaliana] (TAIR:AT5G39340.1); similar to putative histidine-containing phosphotransfer protein 1 [Populus x canadensis] (GB:CAH56499.1); contains InterPro domain Hpt; (InterPro:IPR008207) 0.389121206279929 3.67929405864022 0.00572145490736533 1 4.83515664498273 19.2732495717682 0.389121206279929 0.117784351402399
AT1G56580_at 10.5170738013744 10.6637659600369 9.91217876611596 10.1239819251144 10.4951155176568 10.3441290949039 10.9305256596213 11.1586723075016 10.4900918050163 10.6756922175396 10.8761155321015 11.1189328511596 10.4417170940607 10.3312279307998 10.8497180453422 10.4171225239546 10.160764244348 10.4306450112106 10.5638885778823 0.0677662954373258 0.066421220641333 0.0675476004754049 0.0669912673124469 0.0653866564259707 0.068794075012078 0.0672683664402379 0.0671287857564633 0.0689068814122102 0.0668847003969713 0.0682983442508111 0.0653866564259707 0.067127827490082 0.0716006195270537 0.0674152510448358 0.0669981819046515 0.0698180358390589 0.0681034550239597 0.0703038300693746 1 1 - 21202135 21202454 21202280.455 21201924 21202621 - gene protein_coding_gene FALSE TRUE AT1G56580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G09310.1); similar to Os12g0563600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067038.1); similar to Os11g0683600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068462.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC15899.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.298467617771533 -3.67597800290553 0.00574973008968551 1 4.8306982396369 21.0955993478414 -0.298467617771533 0.065034246672305
AT3G60290_at 8.71274162003315 9.10262892102027 6.70067043744372 7.42924125212881 9.4045614544513 8.99597480159077 8.66816524242216 8.84240487711631 10.3592929988856 9.82428572864339 10.1339872327264 9.96391017027247 9.80907276083276 9.8688430724989 9.5539944670879 9.86267970802342 8.9700973869987 9.63249543440473 9.77922146911302 0.131472854485449 0.131151085998292 0.167819140185724 0.154225378958589 0.131151085998292 0.148797668932675 0.144462614380077 0.133564407389764 0.140412037280155 0.131284377937794 0.136151387372236 0.137143892209112 0.132573844069117 0.143805299651733 0.132477919911089 0.135417593359367 0.145158515645765 0.135117037536608 0.131151085998292 3 3 + 22294835 22295294 22295066.909 22293604 22295531 + gene protein_coding_gene FALSE TRUE AT3G60290.1 oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G44800.1); similar to Fe2+ dioxygenase-like [Capsella rubella] (GB:AAR15457.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.481044107592995 -3.67532272059121 0.0057553350337696 1 4.82981702124005 18.3380411231023 -0.481044107592995 0.162351658981028
AT1G78890_at 8.78543461890379 8.84462709810248 9.11915448277431 9.0427293655316 8.7125849798446 9.0581341191544 8.21461267004623 8.49815835130708 7.66181182734359 7.87449975264628 7.62622110751457 7.59627167838552 7.8802885222457 7.96560422010763 7.77520441974757 8.14678404441356 8.4131753125759 7.89196257508901 7.47476202343236 0.185869215812002 0.187517964917499 0.180638976435808 0.183330887522245 0.186076464923830 0.188733765325137 0.182762471177516 0.190793788198453 0.200845035146436 0.183418534678481 0.188091448343379 0.184636176054023 0.192636338254198 0.193787855241043 0.195267244649553 0.179532565090196 0.187900343916384 0.186398069833178 0.209354829754006 1 1 + 29661593 29662396 29661801 29661470 29662958 + gene protein_coding_gene FALSE TRUE AT1G78890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16840.1); similar to Os08g0230000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061295.1); similar to At1g16840/F17F16.27-related [Medicago truncatula] (GB:ABE84583.1) 0.319511834719429 3.67445240933375 0.00576278818348084 1 4.82864653291896 16.5755778871167 0.319511834719429 0.0791423667018756
AT2G27730_at 9.50903465941302 9.2493541503442 9.50401853554944 9.69065738383313 8.97917480207352 9.0561196731534 8.96103692899918 9.36204597785626 8.90868449154647 9.18101688663301 9.46676783327273 9.70380155749915 9.4762760381517 9.71155601132828 9.88341997555503 9.58777998211365 9.57934222361115 9.4654645146078 8.82813538251128 0.104838551549980 0.103400744780382 0.115815132794996 0.108879035789964 0.109191041019077 0.109414146873461 0.106231024920712 0.106789211790520 0.115791307893399 0.105230704416572 0.104438500502517 0.102620960411215 0.106363554652435 0.107819326366179 0.104814938188256 0.102623150607852 0.114624625759672 0.112245686999995 0.117912603980980 2 2|0 -|/ 11827133 11827893 11827368 11826906 11828955 - gene protein_coding_gene FALSE TRUE AT2G27730.1 Identical to Unknown mitochondrial protein At2g27730 [Arabidopsis Thaliana] (GB:Q9ZUX4;GB:Q8LBD1); similar to Os09g0568900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063974.1); similar to putative F1F0-ATPase inhibitor protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13133.1); similar to Os08g0559000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062499.1) 0.336906716476528 3.67272967228910 0.00577757151460772 1 4.82632927185587 18.5798868991933 0.336906716476528 0.0897546302875232
AT4G13345_at 5.91791074177439 5.60714384500433 6.36973786593777 6.53794571121054 6.92789404868859 5.88620253412816 6.64998778214737 6.28974839076142 4.38950109761629 5.45997467167925 5.66954690499767 5.44364129191622 6.07569758492198 5.83551935709775 4.93861842230136 6.4768676957046 6.8646371393012 5.03390496451517 5.08036925282481 0.220881477343523 0.221658575256744 0.217657973620628 0.220208739457031 0.216900521540615 0.230260809129583 0.223423147319024 0.226624202483048 0.253951534199514 0.216900521540615 0.216900521540615 0.219401217818516 0.218445358472785 0.225735356299282 0.230806550585703 0.222172383709711 0.228841024302046 0.230671664707829 0.216900521540615 4 4|0 +|/ 7768333 7768892 7768523.375 7765069 7769684 + gene protein_coding_gene FALSE TRUE AT4G13345.1|AT4G13345.2 MEE55 (maternal effect embryo arrest 55) similar to TMS membrane family protein / tumour differentially expressed (TDE) family protein [Arabidopsis thaliana] (TAIR:AT3G24460.1); similar to TMS membrane protein/tumour differentially expressed protein [Medicago truncatula] (GB:ABE91594.1); contains InterPro domain TMS membrane protein/tumour differentially expressed protein; (InterPro:IPR005016) 0.564968256395215 3.6709302291995 0.0057930560327233 1 4.82390835289282 11.6577809536905 0.564968256395215 0.20030758314595
AT1G19960_at 10.6130782702953 10.7439771368029 10.2912421498553 10.4567582454629 9.93415639547914 9.98474388954715 9.42661915252274 10.0138476685177 10.0262514113009 9.32374676562153 10.3904444716114 10.5551570070856 10.7153111308265 10.8941523807768 9.65008688875664 10.3744981083942 10.4156269997881 11.1055834876810 9.86889680711534 0.0918063200461644 0.0926860577630722 0.0871177840741508 0.0920202491631626 0.08910068832735 0.0901771551704175 0.0889064628588195 0.0900951788137489 0.103575609270284 0.0938201939385393 0.0861937882342534 0.0887374291684052 0.0877401422728225 0.09499805357364 0.0894154338854443 0.0883392355069606 0.096799301142929 0.0895008929554729 0.0882453618886752 1 1 + 6928084 6928321 6928143 6928030 6928454 + gene protein_coding_gene FALSE TRUE AT1G19960.1 similar to transmembrane receptor [Arabidopsis thaliana] (TAIR:AT2G32140.1) 0.370160255535276 3.67089551567001 0.00579335518092962 1 4.82386164548689 20.3091724739159 0.370160255535276 0.108339201732323
AT3G52480_at 5.07847030641873 5.41764791145974 5.36947343475603 5.77632288554496 5.85510872665871 6.13856197124455 4.06929629345818 5.20703462742652 4.33987229526842 4.14438969936489 4.76491764817356 4.18305844082939 5.29645063862705 4.91399483546354 3.8543474394621 4.68318514835224 5.29608883104108 4.19141754832084 4.28740029661724 0.227531984947508 0.219282433381843 0.230544168376259 0.223159378874343 0.219755620914196 0.227525505377222 0.224000210618460 0.221955176667062 0.233372473964095 0.225532026250381 0.226460142884308 0.221915600810101 0.218584994353425 0.217978748738301 0.21895093703534 0.220559244617364 0.224848307193666 0.223398013258847 0.221800492350298 3 3 - 19463494 19464006 19463788.455 19463232 19464140 - gene protein_coding_gene FALSE TRUE AT3G52480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11640.1) 0.616233136196907 3.67043834225714 0.00579729645907311 1 4.82324649699862 9.81656618463788 0.616233136196907 0.222653651832110
AT3G12520_at 5.27400801046262 4.88223829945855 5.73972068327729 5.56179528794719 5.62094757318978 5.22843227570205 6.83376925188026 6.30252091713665 4.04175607583444 6.28177510462764 3.94964604348561 3.18061788722499 4.19417203432256 4.75092742528017 3.7775393236616 4.16883262104401 5.58764128574479 4.65653089949656 4.22308567415567 0.221597002391872 0.215347424943613 0.214387189529619 0.218653886935822 0.223535363242031 0.213277554036856 0.215068556686875 0.225512969911302 0.241491018944384 0.218850801950194 0.221633531636843 0.215432291499930 0.213526925587029 0.221401214042819 0.235209386210370 0.213802644755318 0.225393346131274 0.218844490267086 0.215338353974653 3 0|3 /|- 3968032 3968728 3968454.143 3967823 3971925 - gene protein_coding_gene FALSE TRUE AT3G12520.1 SULTR4;2 (sulfate transporter 4;2); sulfate transporter Encodes a sulfate transporter that in induced under sulfate limitation. Identical to Probable sulfate transporter 4.2 (SULTR4;2) [Arabidopsis Thaliana] (GB:Q8GYH8;GB:Q9LHF7); similar to SULTR4,1 (Sulfate transporter 4.1), sulfate transporter [Arabidopsis thaliana] (TAIR:AT5G13550.1); similar to sulfate transporter [Brassica napus] (GB:CAC94921.1); similar to At3g12520-like protein [Boechera stricta] (GB:ABB89769.1); similar to sulfate transporter [Brassica oleracea var. acephala] (GB:CAD87011.2); contains InterPro domain Sulphate transporter; (InterPro:IPR011547); contains InterPro domain Sulfate transporter/antisigma-factor antagonist STAS; (InterPro:IPR002645); contains InterPro domain Sulphate anion transporter; (InterPro:IPR001902) -0.425522004772746 -3.6703016082307 0.00579847579122495 1 4.82306250873994 10.2464843998344 -0.425522004772746 0.136420870054361
AT1G29690_at 6.05235608579275 6.04854377989614 5.98549685884919 6.31862747596982 5.86346771756523 5.73978929304021 5.39594478800324 5.25735566682304 5.33000170313041 4.84752062627228 5.63665381172994 5.09503451655101 4.94972737493 5.4077897279422 5.46837907403872 5.10787015041536 5.76287717116717 5.28730475995216 4.91001694673708 0.229755676178963 0.231812890665391 0.226438449143765 0.234476488510129 0.228079066862389 0.234195580291863 0.22607991065462 0.234258340297912 0.232119712832552 0.238731703695624 0.227577782200048 0.227517210982205 0.228786432525321 0.239807593481419 0.232452080694684 0.227594159060491 0.22645811832549 0.230594715061679 0.237405718973096 1 1 - 10379470 10379841 10379677 10379012 10382109 - gene protein_coding_gene FALSE TRUE AT1G29690.1 CAD1 (CONSTITUTIVELY ACTIVATED CELL DEATH 1); oxidoreductase Encodes a protein containing a domain with significant homology to the MACPF (membrane attack complex and perforin) domain of complements and perforin proteins that are involved in innate immunity in animals. Transgenic cad1-1 mutant plants show lesions seen in the hypersensitive response, as well as a spontaneous activation of expression of pathogenesis-related genes and leading to a 32-fold increase in salicylic acid (SA). CAD1 is postulated to act as a negative regulator controlling SA-mediated pathway of programmed cell death in plant immunity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24290.2); similar to Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79511.1); similar to hypothetical protein MA4_82I11.22 [Musa acuminata] (GB:ABF72020.1); similar to hypothetical protein MBP_81C12.22 [Musa balbisiana] (GB:ABF70092.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; (InterPro:IPR000674) 0.299285035427443 3.66914944494927 0.00580842331797018 1 4.82151205426462 11.0170148742695 0.299285035427443 0.0660093733052056
AT4G38970_at 13.2615492501663 13.4099275023171 13.3173184663461 13.3659198051243 13.2746970786583 13.0931922973628 14.0533888672601 14.2097149257782 14.1657338032887 14.2836777784583 14.0990784931539 14.1579291075806 14.1600007675983 14.1346699266657 14.0741559849578 14.2305444220302 13.7777726914929 14.1684903977538 14.1073920700162 0.0603329671977784 0.0610428668989611 0.0633836285240956 0.0603786692732506 0.0603992771852945 0.0663101380683548 0.0662590219078577 0.0644749623642325 0.0626354182368723 0.0606998288596832 0.0606156992357711 0.0601336577636793 0.0601336577636793 0.0630217862251562 0.0612496730608611 0.0601336577636793 0.0679758423240991 0.0614353167475158 0.0611174331030162 4 0|4 /|- 18163717 18164448 18164037.4 18163490 18165756 - gene protein_coding_gene FALSE TRUE AT4G38970.1|AT4G38970.2 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G21330.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to latex plastidic aldolase-like protein [Hevea brasiliensis] (GB:AAM46780.1); similar to plastidic aldolase [Nicotiana paniculata] (GB:BAA77603.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741)|similar to fructose-bisphosphate aldolase [Arabidopsis thaliana] (TAIR:AT2G21330.2); similar to chloroplast latex aldolase-like protein [Manihot esculenta] (GB:AAV74407.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) -0.278067108928912 -3.66884379102949 0.00581106530308593 1 4.82110070516144 27.6411792447059 -0.278067108928912 0.0494827465602425
AT3G61130_at 6.73925060360506 6.82012537561884 6.3281102250673 6.19823683682967 7.23671676482595 7.09853045353901 8.80189129658973 8.47014645414515 7.22686720201421 7.540014841293 8.39588632337351 8.25293213100296 7.84612316364842 7.85935233595894 8.0435126454938 7.56380753087789 7.31021549558499 7.79017780243694 7.71173802744671 0.20876526031575 0.191475384389159 0.211131110573514 0.198753226589720 0.191475384389159 0.204231630013793 0.201604749829931 0.196882653507351 0.208922291196825 0.193326137852608 0.201178523456905 0.191475384389159 0.19592936110566 0.195422169256756 0.203162205394449 0.193812914703716 0.218433845029187 0.206136472330372 0.201257317131605 3 3 + 22635804 22636464 22636090.818 22632967 22636691 + gene protein_coding_gene FALSE TRUE AT3G61130.1 GAUT1/LGT1 (Galacturonosyltransferase 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to GAUT3 (Galacturonosyltransferase 3), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38270.1); similar to GAUT2/LGT2 (Galacturonosyltransferase 2), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G46480.1); similar to putative glycosyl transferase protein A [Oryza sativa (japonica cultivar-group)] (GB:BAD61814.1); similar to 68 kDa protein [Cicer arietinum] (GB:CAB81547.1); similar to Glycosyltransferase QUASIMODO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47337.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.301288645397504 -3.66606044260813 0.00583518248350225 1 4.81735422421487 14.8994381440102 -0.301288645397504 0.0675928395611575
AT2G42770_at 8.44786819509074 8.6640150703764 8.26216866317989 8.15751274460622 8.33929748329524 7.9781635805563 9.28373497570593 9.05429888191003 8.52787638733834 8.4621002062096 8.39866960863 8.5861022432509 8.52472214872378 8.3972989726441 8.60596787245642 8.71320118340928 8.28711596503031 8.43918260539665 8.4256183236515 0.117092975891813 0.114095349193345 0.127830154463916 0.12813386746985 0.117231299965838 0.129945294624709 0.118087684711728 0.114095349193345 0.125832612777581 0.116555432666427 0.120510295409636 0.115267154814419 0.121886810545072 0.127693009324354 0.116313331466329 0.121505486610025 0.133394901847443 0.119493457803859 0.115141224796184 2 2|0 -|/ 17805771 17806843 17806336.6 17805362 17807083 - gene protein_coding_gene FALSE TRUE AT2G42770.1 peroxisomal membrane 22 kDa family protein similar to peroxisomal membrane 22 kDa family protein [Arabidopsis thaliana] (TAIR:AT5G43140.1); similar to Mpv17/PMP22 [Medicago truncatula] (GB:ABE89007.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) -0.328013030159245 -3.66463643847842 0.00584756222054062 1 4.81543701386563 17.0063312230113 -0.328013030159245 0.0849081293202084
AT1G22370_at 6.55534189565459 6.58018317094837 7.51327959890346 7.26100853812878 8.16051250499115 7.14185078446216 6.8537779414802 6.32167333565139 4.48522324013638 6.48021283061214 5.86870816434624 5.26626660686252 6.9322596396287 5.81178268473158 4.44972062004091 6.33662879799537 6.82387141077991 5.77930482258732 6.15727530849592 0.236699284145374 0.234559426972718 0.242392081840579 0.232438924650499 0.242796194974182 0.242990661898325 0.237070030256086 0.23561426255484 0.249332409496415 0.240190569833142 0.236155162254225 0.237554998201773 0.232438924650499 0.247208436087642 0.246874254365846 0.234095220597313 0.242887132077721 0.237883707179869 0.248946637294725 1 1 - 7898114 7898660 7898375.545 7898002 7899868 - gene protein_coding_gene FALSE TRUE AT1G22370.1|AT1G22370.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glycosyltransferase 85A8 [Stevia rebaudiana] (GB:AAR06913.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.571208077155587 3.66186724766586 0.00587171628040584 1 4.81170783270226 12.8565226228374 0.571208077155587 0.203665914902860
AT4G37910_at 8.86772696112443 9.14492951637012 9.16093829667022 9.28614697901908 8.24578820890156 8.41204539869285 9.44348069582625 9.60473097403311 7.82876463895669 8.35309013438 7.77372271758826 8.28023341117618 7.54312670571542 7.86811213928328 8.45729842061513 8.3183241757786 8.24169785387591 7.73616581410476 8.22656854025705 0.187762757411819 0.187252146254026 0.188956386322457 0.189446895698531 0.188603466588906 0.197586589618256 0.186459816976989 0.190007360251417 0.210009909845220 0.189948376399347 0.195862189209116 0.194799363899297 0.187314932243731 0.190263329554608 0.196413582428655 0.18601059452753 0.196097123210268 0.200011317547953 0.195958429030618 4 4 - 17825370 17825898 17825626.545 17825074 17828174 - gene protein_coding_gene FALSE TRUE AT4G37910.1 MTHSC70-1 (mitochondrial heat shock protein 70-1); ATP binding / unfolded protein binding similar to mtHSC70-2 (HEAT SHOCK PROTEIN 70), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G09590.1); similar to CPHSC70-1 (chloroplast heat shock protein 70-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT4G24280.1); similar to cpHSC70-2 (HEAT SHOCK PROTEIN 70-7), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G49910.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:P37900); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABE92899.1); similar to Heat shock 70 kDa protein, mitochondrial precursor (GB:Q01899); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Chaperone DnaK; (InterPro:IPR012725); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.298896632890802 -3.66176800237554 0.00587258390089225 1 4.81157416075374 17.1024615084789 -0.298896632890802 0.0661606733822278
AT2G14680_at 6.69891564852071 6.14530179493424 7.15700596570459 6.7097799862451 7.30872668886986 7.03924676796597 6.14005325406734 5.91938449328716 5.89723351341715 5.76782254996281 6.25500623630272 6.18443540763469 5.61082637798454 5.84985970624448 5.57571167096146 6.0476263415896 6.60047116415346 5.87783733945311 6.26481348383596 0.193001870401676 0.205015153630290 0.195657938174168 0.197639326481375 0.191733424433173 0.195321046816412 0.191733424433173 0.192813605538105 0.199997411816931 0.191733424433173 0.198285847596936 0.191733424433173 0.209455862875798 0.194826622984079 0.199330630809026 0.195388895794094 0.201216161292358 0.194236306970670 0.202327898954519 2 2|0 +|/ 6289641 6290800 6290546.8 6285338 6290998 + gene protein_coding_gene FALSE TRUE AT2G14680.1 MEE13 (maternal effect embryo arrest 13) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16730.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87154.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.425687326314611 3.65936313185212 0.0058936493187219 1 4.80833462391266 12.6282243064223 0.425687326314611 0.137119314978453
AT3G44430_at 5.10035984412087 5.67077777580568 4.9532959501921 4.98799312783426 5.48599813826373 5.91131022265261 6.37406799012281 6.72562086825604 4.47550979607923 4.59906671404118 4.62283363059851 4.54078454811492 4.42808536263587 4.83509071576256 4.25659739158414 4.32831504860501 3.84537138534201 4.20273919166644 4.73213400331662 0.247038041906903 0.246067431885969 0.258465490716999 0.246241371261014 0.250622217507220 0.257219375620966 0.25674577158669 0.259066679556159 0.260155278430951 0.262872693101744 0.244065129779486 0.244065129779486 0.244065129779486 0.244345041705739 0.254898985961209 0.245642255266952 0.265177120455398 0.247533208914665 0.252183620766317 3 3 + 16079330 16079881 16079622.091 16079244 16080737 + gene protein_coding_gene FALSE TRUE AT3G44430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41660.1) -0.426408469182169 -3.65930673855557 0.00589414425488342 1 4.80825864755227 10.1435349882065 -0.426408469182169 0.137473420925523
AT3G17210_at 10.4368781062811 10.6929561619883 10.4595246614653 10.6037632167255 10.7654478076432 10.6765049554490 10.7421956981519 10.7961718159501 10.3658548924922 10.3892161598567 11.0384722501895 11.2705463811495 10.8693072669918 10.6951360379448 11.3468115537084 10.9430135314687 10.9095147088198 10.8880349464257 10.4127584566830 0.101761922830429 0.095391220838239 0.101169272339243 0.098287838117385 0.0953640442946661 0.0984218008573864 0.0956582991207504 0.0990997099215456 0.104704370268013 0.102316398877252 0.0987048403513217 0.0986976387092834 0.0976140738470037 0.098066245723584 0.095401958892320 0.0984914944748765 0.101138933803625 0.09863759948682 0.106343451115492 3 3|0 +|/ 5882337 5882869 5882590.9 5882290 5883206 + gene protein_coding_gene FALSE TRUE AT3G17210.1 stable protein 1-related Identical to Putative Pop3 protein [Arabidopsis Thaliana] (GB:Q9LUV2;GB:Q8LCB1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22580.1); similar to Dimeric alpha-beta barrel [Medicago truncatula] (GB:ABE90962.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097); contains InterPro domain Dimeric alpha-beta barrel; (InterPro:IPR011008) 0.282543898152259 3.6584258981455 0.00590188067815761 1 4.80707186546655 21.3388708467558 0.282543898152259 0.0539544877749131
AT3G13360_at 6.09434727100437 6.57938387843534 5.85268981649413 5.16536525651729 6.03407180983008 5.81297238149576 6.83606211433093 6.6223232491161 6.40129108698413 6.28212768693492 6.7463716227681 7.04469161433616 6.3445943258158 6.17843544300529 6.65604601870202 6.77152149492658 6.20686056119859 5.61471276674555 6.97973523950357 0.234484064226465 0.240624584899834 0.24232395977876 0.241848893022691 0.238338720047348 0.244228500468632 0.236332973286747 0.234087410666710 0.255405049325554 0.240679850060435 0.234087410666710 0.239818038975837 0.237415522936541 0.252554271492919 0.242603278027527 0.234087410666710 0.250082306826695 0.25456974895139 0.23985358937707 3 3 - 4338490 4339157 4338794.273 4338366 4340419 - gene protein_coding_gene FALSE TRUE AT3G13360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56210.1); similar to hypothetical protein [Triticum aestivum] (GB:CAJ19339.1) -0.462867376170491 -3.65699911982185 0.00591443492230366 1 4.80514927740622 12.6245464231921 -0.462867376170491 0.155001809814693
AT1G73950_at 6.18396233364044 6.20068133736751 6.8379156091892 6.69552948903763 7.31718275575752 7.23466832849606 7.28442453111304 6.56541939748216 5.55370996565667 5.78821458873011 5.61401431104944 5.68757149286103 6.26955019538216 5.75122673003577 5.27107195756339 6.00209641187479 7.0402451028451 6.12835203835531 5.52111099300844 0.227518059206094 0.218868160890932 0.226734613851312 0.225364656141605 0.236163684192618 0.231596634355769 0.226512574812308 0.222540447593734 0.244063137448707 0.222717680487372 0.222588345026203 0.218800637439362 0.217884211166122 0.230640544609334 0.220901301202394 0.224724026816385 0.217166363065659 0.227801650611062 0.218759931052201 1 0|1 /|- 27804507 27805482 27804991.875 27803491 27808265 - gene protein_coding_gene FALSE TRUE AT1G73950.1 zinc finger (C3HC4-type RING finger) family protein similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G68820.1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18470.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71207.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90658.1); similar to Putative finger family protein [Brassica oleracea] (GB:AAW81737.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.406103163291721 3.65553080898693 0.00592738417033173 1 4.80317040437542 12.5857369123242 0.406103163291721 0.127677561916441
AT1G68060_at 5.04938301099099 5.45273265617295 3.98389642339644 4.12347949197109 4.87721850643641 4.87318744815163 4.20494949958825 4.64126533141055 3.90474507338828 4.53449896709097 6.14135047390827 6.13770239793877 5.12794692568571 5.87285166824544 6.08327018044733 5.19368560095119 4.25092748943258 5.29034065713202 4.79834386206506 0.218377565755703 0.226461390289254 0.217041282968621 0.219160348539183 0.214036579761436 0.220189084500842 0.221998295094497 0.224248843406574 0.21868309198775 0.214996071633557 0.218776654646130 0.218531703463484 0.213150073156357 0.225363561917248 0.213516310884200 0.214357783564003 0.225476837535067 0.219163426051576 0.218404816988694 1 1|0 -|/ 25515071 25515779 25515545.2 25514604 25518163 - gene protein_coding_gene FALSE TRUE AT1G68060.1 ATMAP70-1 (MICROTUBULE-ASSOCIATED PROTEINS 70-1); microtubule binding Encodes a microtubule associated protein (MAP70-1). Expressed in all tissues. similar to ATMAP70-2 (microtubule-associated proteins 70-2), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G24764.1); similar to ATMAP70-4 (microtubule-associated proteins 70-4), microtubule binding [Arabidopsis thaliana] (TAIR:AT1G14840.1); similar to ATMAP70-3 (microtubule-associated proteins 70-3), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01750.1); similar to Myosin II heavy chain-like [Medicago truncatula] (GB:ABE90729.1); similar to Os06g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057297.1); similar to Os02g0736100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048050.1); contains InterPro domain Myosin II heavy chain-like; (InterPro:IPR009768) 0.363546483158885 3.65528982779261 0.00592951228785907 1 4.8028455980392 9.61315840854767 0.363546483158885 0.105628875965058
AT3G60190_at 9.27819799433558 9.66970498701294 9.66306164349007 9.6434953737016 9.66517071434077 9.22433903027938 8.17773312339109 8.20087386736757 8.54930262695975 8.2722386242542 8.48995891797378 8.44672943672262 8.7078892393075 8.54125561850788 7.96494129481659 8.5404805113876 8.25063807137417 8.31989570224265 8.41112381810047 0.183343401268150 0.179845633521009 0.184552411628706 0.182310364004677 0.185410360731191 0.180398165277287 0.174843897430236 0.175810518426950 0.190185088073248 0.185305587678624 0.177960787064307 0.170883750516543 0.174443624654314 0.184968456116696 0.183753358906903 0.178920528753495 0.184563913145255 0.18653212618518 0.180097847260897 3 0|3 /|- 22255403 22255896 22255681.9 22255144 22258808 - gene protein_coding_gene FALSE TRUE AT3G60190.1 ADL4/ADLP2/DRP1E/EDR3 (DYNAMIN-LIKE PROTEIN 4); GTP binding / GTPase At3g60190 encodes Arabidopsis dynamin-related protein 1E, DRP1E, also known as EDR3, ADL4 and ADL1E, which is 624 amino acid residues long, has a predicted mass of 69.8 kDa and a pI of 7.5. Dynamin-related protein 1E belongs to a plant-specific subclass of dynamin-related proteins (DRP1), consisting of five members in Arabidopsis (A, B, C, D, E). This class is characterized by having an N-terminal GTPase domain, a central µdynamin 2µ domain and a C-terminal GTPase effector domain (GED), a typical structure for plant dynamin-related proteins. However, this class lacks a PH domain and a proline-rich domain, which are found in classical animal dynamin-like proteins. Based on work on animal dynamins, the plant DRP1 proteins should be able to form polymeric structures that wrap around membranes to facilitate membrane tubulation and pinching off of vesicles, processes that are essential to vesicle trafficking and membrane compartmentalization. The edr3 mutation causes a P77L substitution in the G2 motif of the GTPase domain of DRP1E. edr3 mutant Arabidopsis plants display enhanced cell death in response to powdery mildew infection. Identical to Dynamin-related protein 1E (Dynamin-like protein E) (Dynamin-like protein 4) (Dynamin-like protein DLP2) (DRP1E) [Arabidopsis Thaliana] (GB:Q9FNX5;GB:Q9M1C4;GB:Q9SE82); similar to ADL1D, GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT2G44590.3); similar to ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN), GTP binding [Arabidopsis thaliana] (TAIR:AT5G42080.1); similar to ADL1C (DYNAMIN-LIKE PROTEIN 5), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G14830.1); similar to SDL5A (GB:AAC49183.1); similar to Dynamin central re (GB:ABE90709.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58207.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.357112220014811 3.65447167500084 0.00593674348210168 1 4.80174278623422 17.5996280694797 0.357112220014811 0.102165093965960
AT2G35620_at 4.53584564397008 4.47400116222851 3.65501061268037 3.48732638248093 3.93757018511688 3.94552607249294 4.35287942292687 4.83957683070004 4.2388593599244 4.64997448751276 6.56933728605727 6.78988277377739 5.86709312847285 6.21881538043626 6.8959069903843 5.58643601211581 4.97247040681001 5.16390316288785 4.7418670771525 0.226664110970979 0.228498863260299 0.227215424525469 0.228981502332843 0.229824204684250 0.235793047534654 0.232876417968581 0.226753591342768 0.238431166020137 0.230974200153014 0.231931044864659 0.230120465248816 0.228121559750391 0.247937121630737 0.235788130113845 0.227231762192822 0.232623863392166 0.228320729289423 0.226664110970979 2 2 - 14968321 14969008 14968654.091 14968019 14972438 - gene protein_coding_gene FALSE TRUE AT2G35620.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G31420.1); similar to Os03g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049659.1); similar to Os12g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067376.1); similar to SERK1 protein [Zea mays] (GB:CAC37638.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.335098107995454 3.65337382024384 0.00594646149478165 1 4.80026279801392 9.42924084781504 0.335098107995454 0.0897352100794036
AT1G69800_at 5.79032528030164 6.49635749999525 5.88896368783984 5.65554353030228 6.58289217766472 6.25344521924691 6.8158983494873 6.8621791996871 5.10077189641548 5.82236199058687 4.87186740264658 5.05936864167192 5.17693867256367 5.00936159501283 4.99615951977367 5.6966672583744 5.56939551569717 4.81687885441004 5.93339363363484 0.225028778400444 0.224360856397838 0.228623387241863 0.224360856397838 0.224360856397838 0.237132230136511 0.230288950637827 0.231222018436994 0.229200844393829 0.224360856397838 0.227939952239971 0.224626675310391 0.238557364538483 0.224372152110488 0.232146309587005 0.224360856397838 0.233297527918892 0.224510271461041 0.230475207875376 1 1|0 -|/ 26278100 26278788 26278395.2 26277893 26279992 - gene protein_coding_gene FALSE TRUE AT1G69800.1|AT1G69800.2 CBS domain-containing protein similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48530.1); similar to CBS [Medicago truncatula] (GB:ABE77489.1); contains InterPro domain CBS; (InterPro:IPR000644) -0.432620876482331 -3.65067528839664 0.00597042013582285 1 4.7966242112379 11.6774117127646 -0.432620876482331 0.140977819694635
AT2G03340_at 7.8379614928174 8.05321884973341 7.43080592512772 7.5993065575438 8.57850502293271 8.28070431841542 7.74668243593428 7.56283863978006 5.70942232801572 6.70220277988034 6.43154653360545 6.16095860773514 6.53680030328073 7.14003255665489 6.12511417193634 6.85600834342305 7.09250625730251 6.64761846412194 6.09328946482842 0.214893695019339 0.213455658378697 0.213510838947876 0.211819666475927 0.219236859265389 0.215264646794803 0.223470101773573 0.221202461390092 0.231563714660125 0.21390867550926 0.221917391127508 0.213512231799342 0.211363517101771 0.213075591545937 0.226762684756923 0.213844263201187 0.242825742453578 0.220337845856334 0.217311771584487 2 0|2 /|- 1014745 1015162 1014907.4 1014347 1017012 - gene protein_coding_gene FALSE TRUE AT2G03340.1 WRKY3 (WRKY DNA-binding protein 3); transcription factor Encodes WRKY DNA-binding protein 3 (WRKY3). Identical to Probable WRKY transcription factor 3 (WRKY DNA-binding protein 3) (WRKY3) [Arabidopsis Thaliana] (GB:Q9ZQ70); similar to WRKY4 (WRKY DNA-binding protein 4), transcription factor [Arabidopsis thaliana] (TAIR:AT1G13960.1); similar to DNA binding protein WRKY2 [Vitis vinifera] (GB:AAT46067.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.313836699310655 3.65051147439785 0.00597187783161342 1 4.79640329615278 14.2823169114518 0.313836699310655 0.0768510790866508
AT1G54820_at 9.5764866314068 9.50472168430356 8.3431957391927 7.97125593851435 9.63505124574674 9.04649580330177 9.84094779168138 9.58359551059932 9.98633729964338 9.81215974502115 10.2355757839272 10.3609697581703 9.99781461822568 10.0540478529630 10.1804301689014 9.8421267714802 9.08958324544635 9.9440737801759 9.90764648964737 0.116770960213702 0.115047756604444 0.137347012809913 0.142681474333518 0.114706001766235 0.121024261402514 0.11915087178465 0.117594182168304 0.123988933672066 0.114706001766235 0.114706001766235 0.114706001766235 0.119431113557675 0.119762037960714 0.115448161287645 0.114706001766235 0.124631999173017 0.121693467805949 0.114706001766235 1 1 + 20453224 20454372 20453762.182 20451032 20454528 + gene protein_coding_gene FALSE TRUE AT1G54820.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G58690.1); similar to Protein tyrosine kinase, putative [Medicago truncatula] (GB:ABE77986.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.408204160084127 -3.6496708587277 0.00597936397040977 1 4.79526960149904 19.1202815891843 -0.408204160084127 0.129052506435807
AT2G19790_at 8.97224481270725 8.83673148399473 8.99744578741914 8.93196082152 8.94010690720613 8.8875705047806 8.64752219927028 8.76966667096777 8.48750865698018 8.49142721155113 8.97339197515999 8.77191285278256 8.57967556489812 8.79800411765233 9.05447249453891 8.8268667913889 8.665071141262 8.97908534457604 8.34135545475757 0.122399886464575 0.117012918313032 0.117672340101180 0.117027804650882 0.111272985734162 0.120664314989146 0.113040732143667 0.118939124169758 0.117172776696771 0.118849787604588 0.119169291798237 0.114348363502191 0.114897269759597 0.120619967975280 0.111773972479313 0.111717760967860 0.117917248860140 0.114800439374640 0.121072402578406 2 2|0 +|/ 8534410 8535433 8534786.8 8534313 8535615 + gene protein_coding_gene FALSE TRUE AT2G19790.1 clathrin adaptor complex small chain family protein similar to clathrin coat assembly protein, putative [Arabidopsis thaliana] (TAIR:AT1G47830.1); similar to Lon (GB:ABE82100.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.261846320507929 3.64750469415609 0.00599870071147125 1 4.79234771976950 17.5084847200059 0.261846320507929 0.0347540509659861
AT1G02080_at 9.15186000646087 9.09558791514137 9.52765559485113 9.45881106193358 9.68491424044744 9.3018074973987 9.14172676864714 8.90891010456554 8.91453014906097 9.28266734806364 9.49738924725322 9.44372943914096 9.24873583956898 9.40671021604699 9.35669223383995 9.50902039946369 9.29990748165377 9.2262763145592 9.27906276989704 0.109118596925112 0.105771844715452 0.109996329870661 0.105644583529804 0.108322521508712 0.105011358651112 0.109266560419745 0.111795467419645 0.115714675718278 0.108064064416248 0.112373643667449 0.108985758266982 0.106440025114832 0.112200495991640 0.104654688042732 0.105943698727712 0.110113719842677 0.111103236677638 0.105967146871174 1 1|0 +|/ 385948 386602 386262.1 373694 386820 + gene protein_coding_gene FALSE TRUE AT1G02080.1 transcriptional regulator-related similar to transcriptional regulator, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54975.2); similar to CCR4-Not complex component, Not1 [Medicago truncatula] (GB:ABE86980.1); similar to putative transcription regulatory protein [Oryza sativa (japonica cultivar-group)] (GB:AAK55455.1); contains InterPro domain CCR4-Not complex component, Not1; (InterPro:IPR007196) 0.316790062027138 3.64406718938922 0.0060295224871932 1 4.78770951877812 18.5500646830714 0.316790062027138 0.0790919440660827
AT3G50360_at 8.9006802619254 8.81416989649267 9.2018235864054 9.09605828487048 9.40123549746475 8.8590274209735 8.9502582109469 8.68301099115479 8.3534203799826 8.20201815969947 8.82074720026909 8.52065145258154 8.41361968204175 8.55262373731151 8.49393706321098 8.5360853209519 8.68336414263385 8.6376208126756 7.90670381375982 0.143413216487980 0.140848877064080 0.148547194833986 0.151929340233246 0.154434613997582 0.148565073060238 0.145717395786016 0.144422138493214 0.147064878525654 0.145345420104369 0.140732398410685 0.142794887972764 0.143433620386079 0.142643215968924 0.147466770761411 0.147651022071993 0.145634424993353 0.144568936530503 0.162212402003082 3 3|0 +|/ 18685668 18686459 18685954.444 18685319 18686694 + gene protein_coding_gene FALSE TRUE AT3G50360.1 ATCEN2 (CENTRIN2); calcium ion binding similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G37010.2); similar to Caltractin (Centrin) (GB:P41210); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) 0.365395041305414 3.64374295527192 0.00603243832291995 1 4.78727194072641 17.3564723325826 0.365395041305414 0.107249364993058
AT2G42130_at 8.50087203614497 8.4043139805798 8.06984205040952 8.13296062275082 7.8906833614981 7.9315209437054 8.57062201884794 8.55699629464121 8.16045915056049 8.50007607090106 8.30554750303228 8.350176041521 8.25842879911282 8.25043293363273 8.65638241270929 8.59814402617823 8.31704105961507 8.05261120676548 8.39180221209826 0.129589580768949 0.135222914520198 0.131586444518422 0.123491618581182 0.129497427120642 0.135895459447439 0.130307131120327 0.140381199303977 0.134724784684235 0.135686601430841 0.126818562055269 0.123491618581182 0.130144690635291 0.131314780142132 0.132589611178325 0.124040523805995 0.132772858599366 0.126884479447110 0.130069539257808 2 2|0 +|/ 17573965 17574948 17574480.222 17573263 17575222 + gene protein_coding_gene FALSE TRUE AT2G42130.1|AT2G42130.2|AT2G42130.3|AT2G42130.4|AT2G42130.5 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58010.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69760.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58010.1); similar to Os04g0665800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054180.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69760.1) -0.252066492330793 -3.64035327211111 0.00606301133777968 1 4.78269637059458 16.6069137347426 -0.252066492330793 0.0213080688588014
AT1G65860_at 8.79055189337322 9.4640972800393 8.4667706371404 8.473757426476 9.39475005337468 8.97603067891517 9.61644092149812 9.68429373445414 6.31136185852731 8.97447162477445 9.5202998435047 9.44255975941748 9.38121564295357 9.6866941385644 7.69832517732888 9.24857120701267 9.55470361784862 9.51295910078008 8.24981907546266 0.214713818906692 0.204794347150704 0.199954953951726 0.200917074719628 0.206845211209625 0.199922599690658 0.208354558859665 0.206361531765667 0.251542940969858 0.208314211895216 0.204720796763428 0.209683373369615 0.205978355679632 0.205852017723470 0.225120991710176 0.202740551221769 0.201020019344609 0.223125686217785 0.221194413572947 1 1 - 24502874 24503621 24503194.364 24502729 24506408 - gene protein_coding_gene FALSE TRUE AT1G65860.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62570.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62560.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62540.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.424714891486762 3.63984106014237 0.00606764545800244 1 4.78200481108112 17.6587783684161 0.424714891486762 0.137754351884421
AT2G33210_at 7.61917844615739 7.53841871891219 7.89581359246291 7.32636943616543 6.29469217585135 6.82445301275415 8.02169669778852 7.89563745737332 6.1069984962206 6.52363620985365 5.77777431959089 6.90987670025717 5.75658317875948 5.80018790671246 7.12012672501626 5.90597425653593 6.59706805738473 6.00809107046898 6.56212587490984 0.197243525337552 0.197243525337552 0.198342231480286 0.204519474290096 0.201097483204327 0.197470304940389 0.203350809296383 0.202308854852295 0.212152556605616 0.199382516720076 0.208859003071245 0.197243525337552 0.202341345537342 0.200221213559638 0.203445997660602 0.200760664661533 0.207237960037478 0.210274542123196 0.201082896606193 2 2|0 -|/ 14082223 14083155 14082697.222 14081984 14085808 - gene protein_coding_gene FALSE TRUE AT2G33210.1 chaperonin, putative Identical to Chaperonin CPN60-like 1, mitochondrial precursor (HSP60-like 1) [Arabidopsis Thaliana] (GB:Q8L7B5;GB:O49314); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13860.1); similar to HSP60 (Heat shock protein 60), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G23990.1); similar to GroEL-like chaperone, ATPase [Medicago truncatula] (GB:ABE86688.1); similar to Chaperonin CPN60-2, mitochondrial precursor (HSP60-2) (GB:Q05046); similar to Chaperonin CPN60, mitochondrial precursor (GB:P35480); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.423263679618341 -3.63946318985077 0.00607106655803109 1 4.78149460697491 13.7430560107675 -0.423263679618341 0.137066095261831
AT3G54200_at 7.8145066049318 8.70330589241545 8.56466731342632 8.83811413704194 9.51095818176648 9.3730520496421 9.12327022374329 9.31075699191485 9.4456019308098 8.74274336385603 10.0584996503854 9.43143648596868 9.70992781280383 9.93468050805143 9.55649991432457 8.93808997141987 8.99682246922139 9.60307715726775 8.49560941044032 0.134024793626344 0.125620326841067 0.131196121076010 0.120374506976539 0.120374506976539 0.134413710998444 0.124258352470841 0.126106427269196 0.140714846107289 0.132459431392921 0.122280630861729 0.121931334818355 0.122235199711997 0.125201151009097 0.128978477921272 0.123132585614722 0.127461861152900 0.130281185663940 0.127410317916539 3 3 + 20076865 20077346 20077100.909 20076643 20077538 + gene protein_coding_gene FALSE TRUE AT3G54200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G05975.1); similar to Harpin-induced 1 [Medicago truncatula] (GB:ABE93043.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.483857835014759 3.63855470619496 0.00607930000391851 1 4.78026787642044 18.1164693316348 0.483857835014759 0.165889547963045
AT1G34130_at 9.0021894280473 8.7811631914247 8.95735039242788 8.93728798717133 8.3335025987118 7.82791651207267 7.95999911125083 8.200571659008 6.91111281397849 6.88610078052473 7.55231497505017 7.89983999324614 7.27415772395918 7.32030177821149 7.93092129846333 7.35089552476697 7.27056703537827 7.40829091021982 6.63569372425423 0.228817477304468 0.223369788100164 0.228713178244945 0.223981882318603 0.222704117476058 0.244049801033008 0.222189381959060 0.222189381959060 0.249177074205478 0.236426274604038 0.228041370573045 0.222189381959060 0.226026436160144 0.235557745495366 0.222189381959060 0.222189381959060 0.250033714333292 0.243011808352424 0.246005381981420 1 1|0 +|/ 12431720 12432895 12432040.889 12429868 12433165 + gene protein_coding_gene FALSE TRUE AT1G34130.1 STT3B (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE B); oligosaccharyl transferase Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. similar to STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A), oligosaccharyl transferase [Arabidopsis thaliana] (TAIR:AT5G19690.1); similar to ENSANGP00000020753 [Anopheles gambiae str. PEST] (GB:XP_310665.2); similar to oligosaccharyl transferase, STT3 subunit [Dictyostelium discoideum AX4] (GB:XP_639887.1); similar to oligosaccharyl transferase [Aedes aegypti] (GB:EAT44394.1); contains InterPro domain Oligosaccharyl transferase, STT3 subunit; (InterPro:IPR003674) 0.358987786911329 3.63526691788007 0.00610919572719538 1 4.7758273291058 15.6559377405965 0.358987786911329 0.104228273863355
AT2G20930_at 8.37743647454199 8.57699007035658 7.930072155623 8.27357281492379 8.28106966357547 7.78104438483749 7.48335803186594 7.14759618547322 7.36945503809914 7.25459260750839 8.07174241735726 8.56101581891803 7.67592300639086 7.74576065245166 8.67650544446017 7.82952712434955 7.26974240842937 7.7563735132237 7.34200406747873 0.190103666271044 0.186814308549634 0.19098019920361 0.186814308549634 0.186814308549634 0.193600983513367 0.191022674809697 0.191212025185445 0.206941168855284 0.197003112839354 0.192917917687836 0.186814308549634 0.189252607357993 0.198358003003406 0.186814308549634 0.187263812324547 0.207555602777721 0.201826289759539 0.205868157637448 2 0|2 /|- 9007878 9008558 9008196.7 9007700 9008818 - gene protein_coding_gene FALSE TRUE AT2G20930.1 similar to intracellular transporter [Arabidopsis thaliana] (TAIR:AT1G80500.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46590.1); similar to Os09g0541500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063814.1); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.398200562341329 3.63463060259086 0.00611499968268885 1 4.77496772400509 15.6165629905962 0.398200562341329 0.124860545441429
AT3G14940_at 5.60636213235677 6.18127094334444 5.10302390586463 5.49632904298656 5.998936522989 6.17090522372265 6.53597491493634 6.10156218890892 4.70085371583488 5.16773849103694 5.84583792914072 6.33644465952997 5.8473837639078 5.69907238009035 6.1050705594697 6.6982213591042 6.70426696832662 6.81090258227389 5.02402206186412 0.241462977358251 0.234877487795169 0.241433657183858 0.242563583767731 0.233832964004768 0.234093635424152 0.229970970619607 0.249085318894652 0.244432903995620 0.246936564784266 0.232908585163128 0.244552310814399 0.243418556250115 0.229637010692355 0.231088275329976 0.231669962069170 0.237137788034727 0.229474340071157 0.230878803319594 3 3 + 5028806 5029424 5029169.909 5025245 5029716 + gene protein_coding_gene FALSE TRUE AT3G14940.1 ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3); phosphoenolpyruvate carboxylase One of four genes encoding phosphoenolpyruvate carboxylase, its mRNA is most abundantly expressed in roots and siliques. Identical to Phosphoenolpyruvate carboxylase 3 (EC 4.1.1.31) (PEPCase 3) (PEPC 3) (AtPPC3) (PPC3) [Arabidopsis Thaliana] (GB:Q84VW9;GB:O81357); similar to ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT2G42600.1); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.3); similar to phosphoenolpyruvate carboxylase [Brassica juncea] (GB:CAA11415.1); similar to phosphoenolpyrovate carboxylase [Brassica juncea] (GB:CAA11414.1); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AAB80714.1); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) 0.438850698994594 3.63050348083813 0.00615278604553325 1 4.76939088894672 11.5093480001265 0.438850698994594 0.145149099955317
AT3G56800_at 11.2368158732660 11.4112011692400 11.3200262056583 11.2897273660972 11.1460486830950 11.1258161702508 10.831374061303 10.9659100045215 10.9352218493065 10.5640182742293 11.2190919807509 11.3233932815201 11.1112711386905 11.1357340152376 11.0019252392127 11.4064409297419 10.9043652220428 10.9086754910632 10.6232820751899 0.0799050916577324 0.077410942934016 0.0776912878799858 0.077410942934016 0.0811720695560034 0.0815564465361063 0.079677463393842 0.0820891632556804 0.0860922644237634 0.0783006262252708 0.078302015810603 0.078511318110419 0.0779828847499424 0.0787954993503793 0.0802980701931168 0.0797806246368461 0.0823516502318927 0.0816753044381842 0.0780087299524502 3 3 - 21046054 21046306 21046175.545 21045640 21047056 - gene protein_coding_gene FALSE TRUE AT3G56800.1 CAM3 (CALMODULIN 3); calcium ion binding encodes a calmodulin Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.263967045949955 3.62961269413798 0.0061609741561845 1 4.76818686790326 22.0827997226079 0.263967045949955 0.0386332766830229
AT3G54300_at 8.41641428730994 8.59663614750657 8.6841718176678 8.67861099296911 9.05157766779005 8.62880940663179 8.39298909569326 8.37539464307176 8.09019871412334 7.93913330526467 8.36988110026386 8.11778912457367 8.16584334810637 8.3115560433064 8.01478638101388 8.20223534484403 8.40170721048096 8.23277527403884 7.70176365273223 0.191708657940823 0.180109523159663 0.175479825624621 0.182436367671928 0.183539923877558 0.189215194082842 0.175932850561363 0.180250097497988 0.190890717394129 0.189410733539481 0.185853308204390 0.177450275908102 0.183336604128910 0.183314757134667 0.185262104080671 0.182560512532653 0.197321844618728 0.177949462695802 0.188834383067316 3 3|0 -|/ 20119358 20120947 20120187.778 20119187 20121661 - gene protein_coding_gene FALSE TRUE AT3G54300.1|AT3G54300.2 ATVAMP727 (Arabidopsis thaliana vesicle-associated membrane protein 727) member of Synaptobrevin -like protein family Identical to Vesicle-associated membrane protein 727 (AtVAMP727) (VAMP727) [Arabidopsis Thaliana] (GB:Q9M376;GB:Q53XE0); similar to ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) [Arabidopsis thaliana] (TAIR:AT2G32670.1); similar to Os08g0558600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062495.1); similar to formerly called HAT24; synaptobrevin-related protein (GB:AAA56991.1); similar to Os07g0194000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059109.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.316070216078865 3.62665127963778 0.00618827854187912 1 4.76418326123262 16.6717939835143 0.316070216078865 0.0795963809816405
AT3G20000_at 7.95788136615618 8.1945579205794 7.99240273151078 7.93394119024512 7.37735802711846 7.64837032590331 7.9758381020726 8.34935836674813 7.74432294388622 7.40476200828866 6.83881540049866 7.55724931561309 7.09292619902609 7.07126441689099 7.68882505433324 6.9694474957257 7.22293411442267 7.53667426311418 7.45003409646751 0.149405625632993 0.153681631503748 0.153665726191137 0.152346937780646 0.163132320939658 0.148474482840750 0.165712111731937 0.159703099983780 0.156845409959834 0.157758278714373 0.160667495012779 0.151348003668685 0.155705076559329 0.149928458704089 0.153359572272752 0.151925667588996 0.157176937424022 0.155444535869014 0.156949750163361 3 3|0 +|/ 6969030 6970056 6969514.9 6967588 6970572 + gene protein_coding_gene FALSE TRUE AT3G20000.1 TOM40 (translocase of the outer mitochondrial membrane 40); voltage-gated ion-selective channel Encodes a component of the TOM receptor complex responsible for the recognition and translocation of cytosolically synthesized mitochondrial preproteins. With TOM22, functions as the transit peptide receptor at the surface of the mitochondrial outer membrane and facilitates the movement of preproteins into the translocation pore. Identical to Mitochondrial import receptor subunit TOM40 homolog 1 (Translocase of outer membrane 40 kDa subunit homolog 1) (TOM40-1) [Arabidopsis Thaliana] (GB:Q9LHE5); similar to porin family protein [Arabidopsis thaliana] (TAIR:AT1G50400.1); similar to Porin, eukaryotic type [Medicago truncatula] (GB:ABE85742.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) -0.333581760311187 -3.62604489231393 0.00619388525407307 1 4.76336331134476 15.3188668614587 -0.333581760311187 0.0903203769708269
AT3G21865_at 8.47304132004123 8.6845994708161 8.41128723870568 8.49167744944356 8.97898368615101 8.83947126205769 8.26682501718688 8.3388618440443 7.55701066242499 8.44988385241763 8.57383304840796 8.86039714403659 8.88318473976904 8.33464400063927 8.4556869495856 8.47831580503522 8.35582056164712 8.38148978951444 8.69679682679099 0.131148439107193 0.135491716524063 0.138147976603147 0.131436633863031 0.134828707599823 0.135037512223020 0.133297003468251 0.134542968473491 0.156794720293464 0.136118442360964 0.139693117796502 0.133194009841922 0.131683151556167 0.139555287182921 0.141886550903247 0.140765587353273 0.146761534393818 0.140904369102575 0.134523800136788 3 0|3 /|- 7701336 7701762 7701472.125 7701032 7703392 - gene protein_coding_gene FALSE TRUE AT3G21865.1 PEX22 (PEROXIN 22); protein binding Interacts with PEX4 in a yeast two-hybrid. The PEX4 and PEX22 pair may be important during the remodeling of peroxisome matrix contents as glyoxysomes transition to leaf peroxisomes. similar to H0323C08.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86212.1); similar to Os04g0629000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053964.1); similar to Os04g0672800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054228.1) 0.272690360176114 3.62449093197067 0.00620827788522077 1 4.76126181548086 16.9480860537428 0.272690360176114 0.0476678303547831
AT2G05620_at 10.7611175184228 10.8285001193786 10.7763718636994 10.7393256699747 11.0789011846673 10.8839674923411 11.6710413314479 11.6541423443634 11.2724715457882 11.7027650916315 11.5083987337654 11.5399829751285 11.3075893257838 11.4555472767304 11.1319519678706 11.6840818515115 11.2437550110413 11.4360371600937 11.7563797065716 0.0923439006448247 0.0891638895939266 0.0890735484527992 0.0939018734622276 0.0915034717395555 0.0910778158388111 0.0913322845157419 0.0966176259547336 0.107962775592302 0.0926412484168104 0.0907054091647213 0.0890735484527992 0.0907469682575407 0.095715425486485 0.100434407304410 0.0890735484527992 0.0952143305082122 0.0919394949291097 0.0894099879876513 2 2|0 -|/ 2081235 2081594 2081451.8 2081050 2081855 - gene protein_coding_gene FALSE TRUE AT2G05620.1 PGR5 (PROTON GRADIENT REGULATION 5) Involved in electron flow in Photosystem I. Essential for photoprotection. similar to PGR5 [Amaranthus hybridus] (GB:BAE00072.1) -0.261423092994498 -3.62228282605586 0.00622879010025663 1 4.7582750717687 22.5444826834058 -0.261423092994498 0.036381653487245
AT1G71720_at 8.39882649826893 8.24216338059472 8.06567409546023 7.56017496304787 8.66543341608875 8.11808873366902 9.17466134646909 8.67016316818546 8.62411600257288 8.88559473842668 8.28522522930875 8.45359785968241 8.22738298923928 8.29584464349577 8.6140296142012 8.32399639121653 8.22467642171183 8.15835467395725 8.6909959948868 0.146260549473692 0.131154016870808 0.132369997329989 0.140863330894496 0.124597127288031 0.133584166988556 0.125144700481150 0.126273780614814 0.131372308038264 0.126858126033248 0.137958598084643 0.126609718568439 0.129862753715877 0.129719249441661 0.125838191207503 0.125785107426103 0.137589815847147 0.139573974401501 0.126275051869400 1 1|0 +|/ 26988395 26989527 26989090.875 26987406 26989652 + gene protein_coding_gene FALSE TRUE AT1G71720.1 S1 RNA-binding domain-containing protein similar to RPS1 (ribosomal protein S1), RNA binding [Arabidopsis thaliana] (TAIR:AT5G30510.1); similar to putative 30S ribosomal protein S1 [Oryza sativa (japonica cultivar-group)] (GB:AAT39212.1); similar to Os01g0589000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043440.1); similar to Os05g0535800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056159.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.464895615211786 -3.62190172215907 0.00623233762401622 1 4.75775950732814 16.8901268951299 -0.464895615211786 0.158056549443132
AT3G17465_at 4.81121677022731 4.92320960944976 4.76107574133878 4.84948292219013 3.96896937378265 4.79553987137493 4.95793722657469 5.42592482894893 4.64473683880784 4.48757368652646 4.02618316172287 3.77908031723300 4.12175886088672 3.96264026400136 4.70177947614127 4.38786601215954 4.86952207557965 4.51258144772944 5.33689699495908 0.236958133785079 0.235302586191988 0.236705585309431 0.234413598299074 0.231434939589044 0.233536372459143 0.230517499624472 0.239909736322533 0.233484736372307 0.230884070907684 0.230517499624472 0.231712453529707 0.237909842464633 0.235854497552889 0.232040633652495 0.230517499624472 0.234672798162119 0.230517499624472 0.234537939709339 3 3 - 5978094 5978965 5978555.182 5977823 5979658 - gene protein_coding_gene FALSE TRUE AT3G17465.1 RPL3P (ribosomal protein large subunit 3P); structural constituent of ribosome encodes a putative L3 ribosomal protein targeted to the plastid. Identical to 50S ribosomal protein L3-2, chloroplast precursor (RPL3B) [Arabidopsis Thaliana] (GB:Q9LRN8;GB:Q93WN7); similar to ribosomal protein L3 family protein [Arabidopsis thaliana] (TAIR:AT2G43030.1); similar to Translation factor [Medicago truncatula] (GB:ABE84841.1); similar to Os01g0251100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042599.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) -0.481848926563974 -3.618078888388 0.00626804125369634 1 4.75258671881554 9.37079235566733 -0.481848926563974 0.166221631390586
AT4G13170_at 8.55340877087603 8.73627860451387 8.06734724973817 8.4277976465367 8.38343301809529 8.37413583788329 8.94828870045703 9.16442556235572 8.04322306771922 8.46657141551513 7.69557234906946 8.50068555923997 8.26433878496253 7.78410687249338 9.2429822734557 7.88955455041919 8.08837241671923 7.92117560196914 8.28699021594018 0.163154256652615 0.165022431799789 0.169601479469808 0.164228225444286 0.173163538011507 0.168829777178563 0.173755065212253 0.167287575485110 0.163767201422252 0.159617876936874 0.169322999343295 0.159446139007594 0.161068068932376 0.167868492600519 0.165025670356702 0.160373446378788 0.183463383695598 0.161720440486133 0.167685283305924 4 4|0 -|/ 7655129 7656464 7655702.8 7654940 7656590 - gene protein_coding_gene FALSE TRUE AT4G13170.1 60S ribosomal protein L13A (RPL13aC) Identical to 60S ribosomal protein L13a-3 (RPL13AC) [Arabidopsis Thaliana] (GB:Q9SVR0); similar to 60S ribosomal protein L13A (RPL13aD) [Arabidopsis thaliana] (TAIR:AT5G48760.2); similar to 60S ribosomal protein L13a-like protein [Solanum tuberosum] (GB:ABA46790.1); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, archea and eukaryotic form; (InterPro:IPR005755) -0.314834160085534 -3.6171783604767 0.0062764832763588 1 4.75136787395605 16.8013611491900 -0.314834160085534 0.0793352200226454
AT1G14980_at 9.3980466827525 9.54412485462384 9.59750353265604 9.64163800869943 9.13764996145922 8.97522949426532 9.95454414173159 9.92751059880546 8.9446497280013 9.29280787157854 8.93186275387279 9.15501143631597 8.65969220918318 8.64838881741318 9.43006176480088 8.75531438929526 9.0217178402629 8.9609289173126 9.07349298462545 0.088276814661809 0.0836750696078685 0.0868478947569619 0.0844964665621258 0.082343180976202 0.085895138529794 0.0845323878740677 0.0842156602230422 0.0879633288787488 0.0863073428526644 0.082654262824944 0.0871102290451783 0.0892982577550206 0.0929925031825627 0.088548797215249 0.0830487057346003 0.0927472514176205 0.091648646270632 0.0863177549585595 1 1|0 -|/ 5165947 5166624 5166423.444 5165623 5166740 - gene protein_coding_gene FALSE TRUE AT1G14980.1 CPN10 (CHAPERONIN 10) Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs. Identical to 10 kDa chaperonin (Protein CPN10) (Protein groES) (CPN10) [Arabidopsis Thaliana] (GB:P34893;GB:Q96249); similar to 10 kDa chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G23100.1); similar to 10 kDa chaperonin (Protein CPN10) (Protein groES) (GB:Q96539); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains InterPro domain GroES-like; (InterPro:IPR011032) -0.263164624443176 -3.61584830137333 0.00628897397900605 1 4.74956744913096 18.5465421397703 -0.263164624443176 0.038849868153014
AT1G06700_at 8.39088325312678 8.18191339846736 8.41094519222459 8.48992709491797 9.17390719986093 8.627182555582 8.53094977861879 8.29833360106114 8.44208459861241 8.49525689162765 9.18624355366789 8.89661355982527 8.98141406666976 9.02334666598391 8.69452279294477 8.86435122857407 8.6140755358533 8.5974207038552 8.40744327934839 0.154107588943733 0.143528193771150 0.145528175470986 0.144257554443230 0.138141126701915 0.141498356536209 0.143788608025134 0.138958225883974 0.134613403395592 0.133782534624576 0.140728728365016 0.142932845873298 0.134216474348629 0.137501431039852 0.136243979636594 0.139706407207565 0.146459418141537 0.136114052421339 0.140610435740043 1 1|0 -|/ 2052788 2053530 2053334.9 2052480 2055547 - gene protein_coding_gene FALSE TRUE AT1G06700.1|AT1G06700.2 serine/threonine protein kinase, putative|kinase similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G30740.1); similar to protein kinase Pti1 [Glycine max] (GB:AAO92595.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.366978713193403 3.61159334630561 0.00632910971323664 1 4.74380600889597 17.1657603108747 0.366978713193403 0.109848779034690
AT4G17486_at 7.81854062146888 8.3190288094222 7.78501029202465 7.69294279800349 8.40481269709685 8.11483265111933 6.7359559211007 7.27467693400224 7.07752306102841 7.04662551635045 7.69600489592684 7.83969016527355 7.55733695650352 7.90532468217275 6.97497689866876 7.7402092005877 7.27752997130675 7.1597140127269 7.29171962652769 0.229109651538811 0.230984951632129 0.235818949310159 0.244984633221849 0.234198474121153 0.245869228013925 0.231091141917294 0.236170309588482 0.243993203699432 0.233481352039991 0.234131979862912 0.236150299362833 0.232346397911994 0.239946019592078 0.249797361460405 0.229934439711639 0.246926998225305 0.251671956481845 0.229109651538811 4 4|0 -|/ 9750004 9750542 9750264.556 9749740 9751721 - gene protein_coding_gene FALSE TRUE AT4G17486.1 Identical to UPF0326 protein At4g17486 [Arabidopsis Thaliana] (GB:Q93VG8;GB:O23591;GB:Q9FPJ0); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47310.1); similar to hypothetical protein 40.t00020 [Brassica oleracea] (GB:ABD65143.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) 0.421287325661453 3.61116360362603 0.00633317839974364 1 4.74322396575888 15.0969606317955 0.421287325661453 0.137714288278113
AT1G17220_at 11.3388367842078 11.4561899811900 11.2141524751444 11.1820259665038 11.2626997639905 11.2065980244806 11.8416743858497 11.7255099654499 11.7068726443880 11.7858464628490 11.8566316546794 11.7760426220889 11.6378431797094 11.5818545098546 11.5530028579358 11.9136425468792 11.5584001957798 11.1536627839451 11.8075250456907 0.0835272533161773 0.0795829664092415 0.0830369208644735 0.0827249534947607 0.080943297242536 0.087364063986391 0.0820303092799307 0.0821621686679553 0.0916889116323435 0.0814921950436758 0.0800328955892442 0.0801670479917037 0.0809287886090085 0.0810515445470635 0.0821954239249928 0.0801504275767283 0.0831395847928818 0.0874524597437669 0.0795829664092415 1 1 + 5889150 5890114 5889652.636 5885076 5890410 + gene protein_coding_gene FALSE TRUE AT1G17220.1 translation initiation factor IF-2, chloroplast, putative Identical to Translation initiation factor IF-2, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9SHI1); similar to translation initiation factor IF-2, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT4G11160.1); similar to translation initiation factor IF-2 Small GTP-binding protein domain [Synechococcus elongatus PCC 7942] (GB:YP_401037.1); similar to Os05g0575300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056396.1); similar to Translation initiation factor IF-2, chloroplast precursor (PvIF2cp) (GB:P57997); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Translation initiation factor IF-2, N-terminal; (InterPro:IPR006847); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.256023364380728 -3.61106917414129 0.00633407280336615 1 4.74309606690028 23.1012774657696 -0.256023364380728 0.0306875562684342
AT1G43170_at 11.7797118676432 12.0769285404419 11.4679777994433 11.5289325857831 11.6825761803158 11.5599701212197 11.8563671302159 12.2609539390839 11.8168578424263 11.7889125198889 11.5551282069137 11.8059734723370 11.5364150382771 11.4132523116870 11.9057371471273 11.2355141248954 11.2952212987228 11.4802014326900 11.6689096652171 0.0919157189803564 0.0904827779109657 0.0944337654108278 0.0934776382512194 0.0891009005117501 0.0908020166382482 0.0918274530381078 0.0905858200760389 0.095502831490404 0.0894691780221628 0.0939855006669745 0.0870739904363831 0.0871534372776073 0.0896185442548152 0.0904967372137405 0.088751300945006 0.10173951787976 0.0907399202293813 0.0872715242456707 1 1 + 16270380 16270993 16270750 16269160 16271310 + gene protein_coding_gene FALSE TRUE AT1G43170.1|AT1G43170.2|AT1G43170.3|AT1G43170.4 ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1); structural constituent of ribosome|ARP1 (ARABIDOPSIS RIBOSOMAL PROTEIN 1) Encodes a cytoplasmic ribosomal protein. Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q93WD0); similar to ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G61580.1); similar to ribosomal protein L3A [Nicotiana tabacum] (GB:AAQ96335.1); similar to ribosomal protein (GB:AAA66160.1); similar to Translation factor [Medicago truncatula] (GB:ABE83172.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597)|Identical to 60S ribosomal protein L3-1 (Protein EMBRYO DEFECTIVE 2207) (ARP1) [Arabidopsis Thaliana] (GB:P17094;GB:O82401;GB:Q42055;GB:Q93WD0); similar to ARP2/RPL3B (ARABIDOPSIS RIBOSOMAL PROTEIN 2), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G61580.1); similar to ribosomal protein (GB:AAA66160.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) -0.33171124720928 -3.61065227196337 0.00633802315619258 1 4.74253138317507 23.4200057979810 -0.33171124720928 0.0900509640765673
AT1G10630_at 7.86431632609305 8.18055442752062 8.1644313284499 8.23816250115934 7.93909483807036 8.01937952275988 7.55497275282656 8.01497663800153 7.97903449764637 7.95932822715042 8.72132225922183 8.71435118233356 8.40195040561194 8.32867460279953 8.74140020019351 8.25468512014502 8.15030172776402 8.2986925531119 7.89930113002347 0.127975092580699 0.121647218563309 0.121647218563309 0.126982150158603 0.123547710049701 0.13164544713936 0.132045294666593 0.128093916919275 0.131656476280263 0.128608097197161 0.126396072130569 0.126257185195366 0.127008454921766 0.128457084715449 0.124667947950017 0.121647218563309 0.134187922317616 0.126027793010134 0.126561239500470 1 1|0 -|/ 3513358 3514196 3513645.111 3512796 3514730 - gene protein_coding_gene FALSE TRUE AT1G10630.1 ADP-ribosylation factor, putative A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Medicago sativa] (GB:AAR29293.1); similar to ADP ribosylation factor 002 [Daucus carota] (GB:ABB03801.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.346048158145174 3.60937606244637 0.00635013208834148 1 4.74080262996787 16.1956411458624 0.346048158145174 0.0984271928115292
AT1G73030_at 9.86854850619908 10.0786123556420 10.1162491508021 10.0943189623418 10.3712603726982 10.0706438843845 9.77962265400768 9.74182711054637 9.82942636050401 9.51957052627763 9.93181971966535 9.76240064058704 9.92567867707767 10.0126691827613 9.81695126598012 9.91887059528588 9.76623223071082 9.81435348867048 9.39669886077203 0.103146688573356 0.0995421110337743 0.104745868018226 0.104170802500033 0.101741810624764 0.107415746781146 0.104154012582821 0.101228210571118 0.103238921382890 0.101998762753614 0.09845607586707 0.100858315891225 0.0983871187034868 0.102002482581436 0.100885135798168 0.097156906188687 0.103530863240170 0.0997236621226211 0.100353196338991 1 1|0 +|/ 27477745 27478468 27478094 27477487 27478783 + gene protein_coding_gene FALSE TRUE AT1G73030.1 SNF7 family protein similar to SNF7 family protein [Arabidopsis thaliana] (TAIR:AT1G17730.1); similar to putative developmental protein [Nicotiana benthamiana] (GB:AAO59435.1); contains InterPro domain Snf7; (InterPro:IPR005024) 0.291344414266141 3.60710511261666 0.00637173991802617 1 4.73772580982427 19.7403956533828 0.291344414266141 0.0639147197289433
AT2G40890_at 9.14391569999387 9.44812197257802 9.04310061181947 9.13240522715396 9.28665728426907 9.15348600394383 9.50010846633188 9.67213746209428 9.32482706102094 9.42790932957311 8.92929589761298 9.05113486052552 9.29815184617643 9.19492975035278 8.9340904137561 9.45333531660739 9.1913171424705 9.0055113046527 9.55202995566926 0.100947482701378 0.101405503618377 0.108099774733272 0.101041838082032 0.102725621801173 0.100525585380975 0.101891070793772 0.103507163678075 0.103589600525092 0.0997233952710142 0.102377229375199 0.097493970771702 0.102644301004773 0.104063514621076 0.101353374378562 0.101627756003377 0.0994247647929918 0.101901294996541 0.0989335495392313 2 2 - 17065387 17065880 17065661.091 17065131 17067730 - gene protein_coding_gene FALSE TRUE AT2G40890.1 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3); p-coumarate 3-hydroxylase encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis and flavonoid biosynthesis. Also affects the biosynthesis of coumarins such as scopoletin and scopolin as a branching-out-pathway from the phenylpropanoid acid level. Identical to Cytochrome P450 98A3 (EC 1.14.-.-) (CYP98A3) [Arabidopsis Thaliana] (GB:O22203;GB:Q940C7); similar to CYP98A9 (cytochrome P450, family 98, subfamily A, polypeptide 9), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G74550.1); similar to Cytochrome P450 98A2 (GB:O48922); similar to cytochrome P450 monooxygenase CYP98A37 [Medicago truncatula] (GB:ABC59086.1); similar to p-coumaroyl shikimate 3'-hydroxylase isoform 2 [Ocimum basilicum] (GB:AAL99201.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.294929958677366 -3.60667876877020 0.0063758052015167 1 4.73714808896591 18.5810630569932 -0.294929958677366 0.0665406627459571
AT4G15000_at 9.17139261189247 9.57501079871218 8.36744533472531 8.73243701058957 9.08664729747897 8.74910937728033 9.64260373048162 9.82732833725784 9.13750667532618 8.91186706672548 9.19087809746059 9.60351067360418 8.96747529461771 8.98542525041692 9.76731331264108 8.841419188672 8.27980059139568 8.6813968613042 8.86964942574057 0.155074805985165 0.14592131399846 0.155416445727715 0.153416540038954 0.150134354104923 0.161269083999444 0.152321469574244 0.146814580765774 0.154748240055465 0.153821182889276 0.152855595234181 0.145700370490776 0.153701554778399 0.154526259347315 0.149455614049068 0.154435938486947 0.167967186637303 0.152469963435669 0.147540581318519 4 4 + 8571912 8572205 8572038.364 8571829 8572485 + gene protein_coding_gene FALSE TRUE AT4G15000.1|AT4G15000.2 60S ribosomal protein L27 (RPL27C) Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); similar to ribosomal protein L27 homolog (GB:AAA86952.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141)|Identical to 60S ribosomal protein L27-3 (RPL27C) [Arabidopsis Thaliana] (GB:P51419;GB:O23354); similar to 60S ribosomal protein L27 (RPL27B) [Arabidopsis thaliana] (TAIR:AT3G22230.1); similar to Ribosomal protein L27e; KOW [Medicago truncatula] (GB:ABE87742.1); contains InterPro domain Ribosomal protein L27e; (InterPro:IPR001141) -0.376764714200422 -3.60655658145753 0.00637697079084871 1 4.73698251308901 18.150326877983 -0.376764714200422 0.115335654960434
AT4G17300_at 7.66823205803572 7.75471668435066 7.41124544700398 7.25842429772069 7.35826307475905 7.09348943888294 8.04814712422672 8.05232145362523 8.00447733236664 7.86560736047642 7.85743973415382 7.91385760803059 7.51522304992609 7.77633121616929 8.63181264679794 7.99912470164822 7.63751345405148 7.92981746879873 7.7297638078488 0.138713736161959 0.132402173101379 0.140925825176765 0.145493513036725 0.137943365950461 0.144694649339479 0.134026924084303 0.136373660141770 0.143627910075364 0.136967103465878 0.139434185947029 0.132402173101379 0.138862069283777 0.136006255207079 0.148332001734988 0.137962130054746 0.139664510098120 0.138321885639455 0.133796730754489 4 4|0 +|/ 9683782 9684761 9684219.857 9681551 9684984 + gene protein_coding_gene FALSE TRUE AT4G17300.1 NS1 (OVULE ABORTION 8) Asparaginyl-tRNA synthetase protein involved in amino acid activation/protein synthesis. Identical to Asparaginyl-tRNA synthetase, chloroplast/mitochondrial precursor (EC 6.1.1.22) (Asparagine--tRNA ligase) (AsnRS) (SYNO) [Arabidopsis Thaliana] (GB:O48593;GB:O23573); similar to SYNC1, ATP binding / aminoacyl-tRNA ligase/ asparagine-tRNA ligase/ aspartate-tRNA ligase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G70980.1); similar to Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) [Medicago truncatula] (GB:ABE80885.1); similar to putative aspara (GB:BAC15528.1); similar to aspara (GB:ABD65116.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Asparaginyl-tRNA synthetase, class IIb; (InterPro:IPR004522); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) -0.279737473709095 -3.60595106627976 0.00638275035033308 1 4.73616194788631 15.4677330232478 -0.279737473709095 0.0549857597968542
AT4G38260_at 7.2558133062388 6.8289808862618 7.2199041366975 7.18052986698185 7.00591076525565 7.15611102682075 5.67372720413998 5.11491702475793 5.21876667586057 5.13863076509632 4.67372321845872 4.85623785756769 4.9116203019821 5.41370820688802 4.49362652591421 5.66159654190863 5.79484232109077 5.56836258581751 5.55718937823086 0.256765406386776 0.257468668231059 0.277296269971541 0.259101583047051 0.255090830640968 0.274266578731527 0.258404579101423 0.258344039438460 0.271079415908995 0.255090830640968 0.262791366251754 0.255090830640968 0.269493112056189 0.263104249380368 0.255090830640968 0.255090830640968 0.283976371953986 0.255090830640968 0.267451932836563 4 4|0 -|/ 17937189 17937881 17937505.667 17936915 17938722 - gene protein_coding_gene FALSE TRUE AT4G38260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20740.1); similar to H0409D10.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66750.1); similar to Os09g0323500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062871.1); contains InterPro domain Protein of unknown function DUF833; (InterPro:IPR008551) 0.394553382740092 3.60564980137793 0.00638562794787667 1 4.73575366806226 11.9177752611523 0.394553382740092 0.124619207536985
AT3G18040_at 7.47254545714989 7.32620275666114 5.97127086862766 6.38941388612639 7.41782693968132 7.04482750440151 7.55688020701029 7.40025892960153 6.96501444745144 6.9365429278787 7.17890279318118 7.11827856862322 6.2657303103311 7.03520690389103 7.33933623569185 6.27701746324262 6.39041792784381 6.9902197790397 6.50323933627392 0.167198306971141 0.164748990255907 0.17165561999732 0.161040444564727 0.164046703975438 0.177021904652318 0.163602584146004 0.161861284161103 0.160779893231724 0.169322158984820 0.162138773975871 0.161180982467373 0.169976157804197 0.167697275495093 0.158498110231146 0.165143125630394 0.181302189602178 0.166600170717847 0.157799243108865 3 3|0 +|/ 6177128 6178120 6177641.333 6174727 6178471 + gene protein_coding_gene FALSE TRUE AT3G18040.1|AT3G18040.2 MPK9 (MAP KINASE 9); MAP kinase MAP KINASE 9 Identical to Mitogen-activated protein kinase 9 (EC 2.7.11.24) (MAP kinase 9) (AtMPK9) (MPK9) [Arabidopsis Thaliana] (GB:Q9LV37;GB:Q9MB22); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to hypothetical protein MtrDRAFT_AC139526g19v1 [Medicago truncatula] (GB:ABE80150.1); similar to mitogen-activated protein kinase 9 [Brassica napus] (GB:AAU95462.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|Identical to Mitogen-activated protein kinase 9 (EC 2.7.11.24) (MAP kinase 9) (AtMPK9) (MPK9) [Arabidopsis Thaliana] (GB:Q9LV37;GB:Q9MB22); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to hypothetical protein MtrDRAFT_AC139526g19v1 [Medicago truncatula] (GB:ABE80150.1); similar to mitogen-activated protein kinase 9 [Brassica napus] (GB:AAU95462.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.355173597016971 -3.60410630244376 0.00640039257091652 1 4.73366168066817 13.8853971444568 -0.355173597016971 0.103821054756681
AT1G54080_at 9.67577369884104 9.53638267532044 9.78188451821025 9.5497004840821 9.73805371268509 9.67775861834498 9.73970145586044 9.7660254636538 9.4381366545496 9.39250407264554 9.93726590958558 9.92181506044835 10.1324309441731 9.94324246340369 9.87463388873204 9.93686057416378 10.0922779433775 9.69131580658562 9.38465455901135 0.0877119900676294 0.0883428044038827 0.0901381943967936 0.0956510430723393 0.08952086634915 0.0931417597228928 0.0873367011143548 0.090930452302058 0.101356665629832 0.08837129304689 0.087553918137901 0.0885217887946944 0.0938493863077722 0.0874539504344972 0.0883696871512363 0.0873367011143548 0.0907816424467217 0.101797828086671 0.088062434361608 1 1 - 20187608 20188297 20187959.818 20187249 20190694 - gene protein_coding_gene FALSE TRUE AT1G54080.1|AT1G54080.2 UBP1A; mRNA 3'-UTR binding similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to oligouridylate-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G14100.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to oligouridylate-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G14100.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.271755202492448 3.60391927476885 0.00640218407146439 1 4.73340816824289 19.3563244546469 0.271755202492448 0.0482284859120649
AT4G32570_at 8.85756276757184 8.10351874814916 7.77741702522655 7.23551685972145 8.67902081106483 8.15125879094715 9.67270743963295 9.23176625929064 8.64804525555799 9.15436063927927 8.93950957833524 9.36309033766135 8.85239237266339 8.92974801263636 9.26325177114866 9.0240178268835 8.24562333123168 8.62399148864395 9.21500479152928 0.104939307011664 0.107377118126848 0.111313066176139 0.119430480794649 0.104063264783419 0.103247010693832 0.107933776939826 0.107299020121636 0.112856638199271 0.106631314656207 0.106241387661258 0.104727645433997 0.109559637800440 0.104463169900339 0.103191597055953 0.103191597055953 0.121535106245498 0.103191597055953 0.106627522321868 4 4|0 -|/ 15716736 15717400 15717044.4 15716238 15718864 - gene protein_coding_gene FALSE TRUE AT4G32570.1 contains InterPro domain ZIM; (InterPro:IPR010399) -0.553092952071406 -3.59871715260712 0.0064522274345862 1 4.72635473885528 17.4190994137119 -0.553092952071406 0.199966146487207
AT2G03430_at 6.36577048298519 6.61735125268005 6.60263220957418 6.40947185151155 7.10956613571736 6.43332681596358 6.25424317047482 6.16449096224266 5.79309081967199 5.45670701046169 6.08964214841119 6.32957849654672 5.71052440045017 6.45091745539832 6.01658710723399 6.12478930427627 5.80291170789519 5.72225156136676 5.28103261228033 0.230573917404501 0.219903744395183 0.219903744395183 0.223724250237458 0.225311443878661 0.233920528962922 0.231649908605624 0.234503257011966 0.234707351886471 0.231188942373822 0.219903744395183 0.225400999592224 0.231036982168334 0.227827954577173 0.220024909185780 0.219903744395183 0.223865463241846 0.225735993645435 0.226319488934609 2 0|2 /|- 1036196 1037015 1036442.375 1036029 1037629 - gene protein_coding_gene FALSE TRUE AT2G03430.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G19150.1); similar to putative ankyrin [Oryza sativa (japonica cultivar-group)] (GB:AAK16185.2); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.404454372327659 3.59602648561866 0.00647827338555625 1 4.72270497704367 12.2651951535613 0.404454372327659 0.130189436963643
AT3G26100_at 8.36052482691081 8.22140598386127 8.87893063184615 8.9417950104128 9.14841170258167 8.91511652330061 8.17553129027911 8.28358984834132 8.34000726573296 8.38863362350401 8.30101215513065 8.08945621058659 8.29945760423006 8.60477591419076 7.19517704629296 8.4258586121926 8.29622803744628 8.32938699391696 8.33121129436202 0.110916043770180 0.105415047460776 0.107174257695579 0.110653273622791 0.109131643828429 0.105544038207826 0.110504154731751 0.107282968478994 0.113744177591573 0.107608209888647 0.109016663447519 0.105415047460776 0.106596568418293 0.110899901518998 0.114639089790082 0.108548914570907 0.125072919557610 0.108788122194179 0.114624374856431 3 3 + 9540727 9541300 9541020.455 9538160 9541690 + gene protein_coding_gene FALSE TRUE AT3G26100.1|AT3G26100.2 regulator of chromosome condensation (RCC1) family protein similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G15430.2); similar to Os12g0284000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066582.1); similar to regulator of chromosome condensation, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97468.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) 0.275092745117937 3.59561685814523 0.00648224837282349 1 4.7221492441417 16.8886397936657 0.275092745117937 0.0517457391852057
AT3G11530_at 8.0192052932098 8.15208903473459 8.02354133297799 8.21145921097454 8.73658201667638 8.46254020392664 8.12070060964007 8.00047783141257 7.50128865395947 7.5263741646156 7.8730421559098 8.01220172823355 7.99117667161446 7.86091100014152 7.44472357137713 7.87287580209027 7.60258500481113 7.93939546398498 7.54935628248234 0.200662941372674 0.183891610773341 0.198554888119617 0.194092236039539 0.18942051896635 0.196117807065243 0.189804972280042 0.184272451148855 0.202481733315076 0.189976912373870 0.190804664555052 0.192041407570164 0.198485811127981 0.200654406368684 0.196642699177548 0.19404206647533 0.205260863862715 0.191056185517047 0.193431459835292 3 3|0 -|/ 3628814 3629866 3629049.2 3628573 3630489 - gene protein_coding_gene FALSE TRUE AT3G11530.1|AT3G11530.2 vacuolar protein sorting 55 family protein / VPS55 family protein similar to vacuolar protein sorting 55 family protein / VPS55 family protein [Arabidopsis thaliana] (TAIR:AT1G32410.5); similar to vacuolar protein sorting 55 family-like [Oryza sativa (japonica cultivar-group)] (GB:BAD88257.1); similar to Os01g0966500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045503.1); contains InterPro domain Vacuolar protein sorting 55; (InterPro:IPR007262) 0.292176694987090 3.59346116042486 0.00650320963710944 1 4.71922425143134 15.8909679209221 0.292176694987090 0.0653321235567921
AT4G29680_at 7.61251324680283 7.69559400696766 7.30285915730453 7.69777553034985 7.3563664812813 6.9886869467994 7.16136486888838 7.37889103787734 6.02038827112292 6.36355104849513 6.74041108639607 7.23347428480339 7.2843560439963 7.31537326471904 6.94752978887766 6.86025695430104 6.87659404317424 7.2314486467041 6.3215000055877 0.209466197166406 0.201958443901123 0.221172943265773 0.217179463703171 0.201958443901123 0.209948846550252 0.201958443901123 0.202010785834907 0.221062189528732 0.210141752717656 0.208238330977891 0.204973891379266 0.206151868044369 0.202546012097270 0.208912796173008 0.208106030152369 0.219975169405873 0.207905176328236 0.211177716489122 4 4 - 14538079 14538509 14538310.364 14537787 14539600 - gene protein_coding_gene FALSE TRUE AT4G29680.1 type I phosphodiesterase/nucleotide pyrophosphatase family protein similar to type I phosphodiesterase/nucleotide pyrophosphatase family protein [Arabidopsis thaliana] (TAIR:AT4G29690.1); similar to Type I phosphodiesterase/nucleotide pyrophosphatase [Medicago truncatula] (GB:ABE79240.1); similar to nucleotide pyrophosphatase-like protein [Spinacia oleracea] (GB:BAB20681.1); similar to Type I phosphodiesterase/nucleotide pyrophosphatase [Medicago truncatula] (GB:ABE90599.1); contains InterPro domain Type I phosphodiesterase/nucleotide pyrophosphatase; (InterPro:IPR002591) 0.350182655592977 3.59204914562326 0.00651697845023718 1 4.71730796953013 14.0474198874623 0.350182655592977 0.101700683301179
AT1G66820_at 8.2249280373601 8.67722324995505 7.64861926616252 7.59309691999246 8.55616097907644 7.91738306957868 9.30445574235891 9.1528349737894 8.50034115411377 8.53201104940371 8.19726431331813 8.83878499804812 8.53455253178148 8.64518626121503 8.65818792283286 8.46416580871642 8.54065178521833 7.91593080003586 8.17881114270352 0.157711551715569 0.163631441096112 0.176351291655463 0.174574234425129 0.165386105670229 0.17125626043127 0.165779866776112 0.167452541614171 0.176690979841523 0.159135582261395 0.162288038120282 0.162593584573304 0.164404094401695 0.166045554376751 0.161437286377994 0.159081016393997 0.162439323895308 0.167475330161894 0.170068878316397 1 1 + 24933759 24934041 24933914.455 24933703 24934214 + gene protein_coding_gene FALSE TRUE AT1G66820.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G10330.1); similar to Os11g0242700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067592.1); similar to hypothetical protein Bpse11_03001995 [Burkholderia pseudomallei 1106a] (GB:ZP_01489329.1); similar to hypothetical protein Bpse4_03000890 [Burkholderia pseudomallei 406e] (GB:ZP_01336410.1) -0.420213002462284 -3.59179510785444 0.00651945889091103 1 4.7169631774592 16.8233686138106 -0.420213002462284 0.138300861857114
AT4G38600_at 7.04908980603744 6.74552831646805 6.98830847450196 6.87403156365908 6.82285801697686 6.88480282227276 6.36281672898037 6.78142744666614 5.93271931565624 5.81238792174897 6.21961884371992 6.44525788852145 6.55675770109498 6.53608569259661 6.35063107185346 6.82917628369194 6.17516594929079 6.18630439436077 5.96320898534082 0.138440448901109 0.136683261171199 0.145629129224343 0.139760371598555 0.140114599248418 0.142943076080683 0.139125922303363 0.141372618729810 0.137309090769975 0.142812059566608 0.141698347020512 0.139872697959369 0.135247468616535 0.142960272000112 0.137644104587302 0.137401371329623 0.142064296578421 0.137218315704047 0.142853157464780 4 4|0 -|/ 18041502 18045855 18043931.238 18041025 18049286 - gene protein_coding_gene FALSE TRUE AT4G38600.1|AT4G38600.2 KAK (KAKTUS) encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. similar to UPL4 (ubiquitin-protein ligase 4) [Arabidopsis thaliana] (TAIR:AT5G02880.1); similar to putative HECT ubiquitin-protein ligase 3 [Oryza sativa (japonica cultivar-group)] (GB:BAD07806.1); similar to HECT [Medicago truncatula] (GB:ABE85276.1); similar to hypothetical protein AN1746.2 [Asper (GB:XP_659350.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain HEAT; (InterPro:IPR000357)|similar to UPL4 (ubiquitin-protein ligase 4) [Arabidopsis thaliana] (TAIR:AT5G02880.1); similar to putative HECT ubiquitin-protein ligase 3 [Oryza sativa (japonica cultivar-group)] (GB:BAD07806.1); similar to HECT [Medicago truncatula] (GB:ABE85276.1); similar to hypothetical protein AN1746.2 [Asper (GB:XP_659350.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain HEAT; (InterPro:IPR000357) 0.333693649353612 3.59148169920954 0.00652252040897784 1 4.71653779147916 12.9711812981403 0.333693649353612 0.092269280744088
AT4G01480_at 7.84844530439212 8.16733970659123 7.0914502838333 7.38417597558338 7.9538454282092 7.30937107205068 6.62968445173049 7.12384519848255 4.99143550947128 5.44384474289476 5.89478700186855 5.47104124613102 6.09419523534269 6.33465305667746 5.86428350707811 6.18841266918727 6.20088790154568 6.1890922028982 4.85440921320565 0.287419795904945 0.281392312876174 0.282057732671135 0.278455457174895 0.287232354304698 0.276267217924532 0.271222420643791 0.279522645799791 0.278538519997510 0.280541793216578 0.271222420643791 0.271222420643791 0.271540971080299 0.279994808139625 0.272827402295578 0.271222420643791 0.277158495189790 0.279654071047416 0.275444589904604 4 4|0 +|/ 626611 627722 627172 626118 628055 + gene protein_coding_gene FALSE TRUE AT4G01480.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT1G01050.1); similar to soluble inorganic pyrophosphatase [Populus tremula x Populus tremuloides] (GB:AAD46520.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) 0.462743986010301 3.58541180801078 0.00658211483881232 1 4.70829637956058 13.0016358065000 0.462743986010301 0.159259566955088
AT2G04690_at 9.42696822440656 9.78924592652743 9.61733111907351 9.69333622881858 10.2574357606362 9.99567851952535 9.06697237458942 8.85903605075758 9.1193155761798 8.70675905020421 8.70321417260334 8.8869032989577 9.23170952843683 8.83502873637209 8.7163402880034 9.13625015378996 9.10713142642027 9.15378116116278 8.96476953344995 0.133576095172620 0.127903034110085 0.132772041658802 0.131688360599073 0.127778063198516 0.137634161985520 0.131248759920110 0.128356199904455 0.132571296999873 0.132383695997366 0.139709165277222 0.124966625850610 0.124966625850610 0.132922767456394 0.139710199297636 0.124966625850610 0.146778347122552 0.130418233586233 0.130544610071052 2 2|0 +|/ 1644628 1645632 1645009.625 1644494 1646348 + gene protein_coding_gene FALSE TRUE AT2G04690.1|AT2G04690.2 cellular repressor of E1A-stimulated genes (CREG) family similar to Os06g0238300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057255.1); similar to PREDICTED: similar to cellular repressor of E1A-stimulated genes [Apis mellifera] (GB:XP_624302.1); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.323201611025065 3.58529878285424 0.00658322997198768 1 4.70814286857197 18.5390386417066 0.323201611025065 0.0863153013566912
AT4G02480_at 8.51609991610102 8.51283543747671 8.47442407021718 8.52118460396477 8.72258618854972 8.5664246446956 8.2333778837893 8.17870188994468 8.12987090294357 8.15287647218081 8.60483590748204 8.56622986182145 8.62175783845296 8.3482582219611 8.29331078470271 8.55052739298355 8.63511741540306 8.00785199732495 8.18949637805297 0.140699612731418 0.140820963307938 0.140997756540675 0.138531455062616 0.143841524444837 0.144728329528776 0.140147781313529 0.141810197225117 0.145819940479882 0.14692834582504 0.137097376433609 0.135878123306064 0.136536719097257 0.140662886629594 0.14270436772176 0.135799216998653 0.142776784761660 0.138276583253257 0.145008535777059 4 4|0 -|/ 1082084 1086323 1083627.643 1081759 1088846 - gene protein_coding_gene FALSE TRUE AT4G02480.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G62130.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G02890.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G24860.1); similar to AAA-type ATPase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95244.2); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85040.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85038.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain SMAD/FHA; (InterPro:IPR008984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.253486344076461 3.58482054162654 0.00658795062650278 1 4.70749329988558 16.7711547102968 0.253486344076461 0.0297599164502691
AT2G29340_at 8.22680655001465 8.46021146467867 8.21672140017257 8.31515824524747 9.12678183031217 8.49156798155043 8.93810752280783 8.97390524897657 8.58273486262824 9.17652713088179 7.97050399832812 8.26573648861424 8.2695382348875 8.41883976397542 7.83874241334484 7.8209028175382 8.36276821414336 8.46981906710437 8.71819772747778 0.178641344066679 0.159583127235089 0.172139488678225 0.163240702273348 0.164172156638076 0.166253287131913 0.163661622327624 0.165321749634550 0.178629370744457 0.175048014650906 0.164226919941835 0.169434318630123 0.179080654021077 0.168483877495188 0.166277893973535 0.164931233929679 0.170978660257360 0.163344183971252 0.157723848479136 2 0|2 /|+ 12604429 12605060 12604769 12604192 12606280 + gene protein_coding_gene FALSE TRUE AT2G29340.1|AT2G29340.2 short-chain dehydrogenase/reductase (SDR) family protein similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29320.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0268900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049675.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.380456932276346 -3.58436076909821 0.00659249235524083 1 4.70686878493057 17.095120671339 -0.380456932276346 0.118507168838892
AT4G08980_at 8.91215524321474 9.24179982776374 9.38514124395657 9.41851962030151 9.8672044902041 9.52458460978237 9.09237407574477 8.79431744247653 8.66165468831485 8.61146516193908 8.84229903263038 8.64742185580527 8.94747153315434 9.04774363177705 8.34661620728173 9.0835661662209 9.11219891778997 8.84420316058771 8.87127342569642 0.134386205096959 0.126269746441812 0.129206268041837 0.127288438854047 0.126605900316556 0.129502218134247 0.125847609673394 0.132932838012229 0.148370835207531 0.131590403538093 0.137369671051649 0.124586189094903 0.122606601975337 0.126652029009369 0.13002577424201 0.12549415077665 0.129275667523073 0.127907656867431 0.125699893406702 4 4 + 5759527 5760072 5759758 5758102 5760555 + gene protein_coding_gene FALSE TRUE AT4G08980.1|AT4G08980.2|AT4G08980.3|AT4G08980.4 F-box family protein (FBW2) similar to F-box family protein (FBL20) [Arabidopsis thaliana] (TAIR:AT4G05460.1); similar to Os06g0219700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057164.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.1); similar to Os02g0757700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048172.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.341421574133499 3.58198365553336 0.00661602686672701 1 4.70363943203041 18.0663809800836 0.341421574133499 0.0972816302339039
AT2G47610_at 9.83630780540519 9.90464751321933 9.37800790470162 9.3549230912884 9.52540917964871 9.34903948024464 10.1026235638975 10.1310198837268 9.15338999063552 9.60377477537825 9.53272195736039 9.82716200523346 9.3602571956217 9.11075267003588 10.1904044776021 9.0354823538137 8.96353514415027 9.38340117203947 9.27976676970454 0.118760706341562 0.114335548051332 0.116032770294794 0.119474907094284 0.113366710690763 0.122595917712441 0.112600507172486 0.113744512164234 0.134390419454209 0.111468624494072 0.111046273565970 0.11391378475152 0.116478325834167 0.124202533743341 0.115521845716961 0.111046273565970 0.126470590958791 0.113206411805803 0.117182622083799 2 2|0 +|/ 19537582 19538168 19537915.4 19536814 19538729 + gene protein_coding_gene FALSE TRUE AT2G47610.1 60S ribosomal protein L7A (RPL7aA) Identical to 60S ribosomal protein L7a-1 (RPL7AA) [Arabidopsis Thaliana] (GB:P49692;GB:O22250); similar to 60S ribosomal protein L7A (RPL7aB) [Arabidopsis thaliana] (TAIR:AT3G62870.1); similar to 60S ribosomal protein L7A-like protein [Solanum tuberosum] (GB:ABB72809.1); contains InterPro domain Ribosomal protein L7AE; (InterPro:IPR004037); contains InterPro domain Ribosomal protein L7Ae/L30e/S12e/Gadd45; (InterPro:IPR004038); contains InterPro domain Ribosomal protein L7A; (InterPro:IPR001921) -0.255992000424342 -3.58192816207233 0.00661657733778392 1 4.70356403335213 19.0833015363773 -0.255992000424342 0.0333398000395887
AT2G42880_at 8.29742902614723 8.3391910762659 7.01810339151163 6.22731628022262 8.40631060027152 7.79703902108823 8.50314795235975 8.26986847883118 9.08250503633995 8.7477296161639 9.3969321980631 9.35962822808458 8.72448530242417 9.06648258162745 9.14941656310941 8.6912772578857 7.68888767809697 8.68317627597562 8.74203612004575 0.146610997176284 0.147079179389898 0.16368479272648 0.159262879717558 0.142655832499574 0.150126690359363 0.14020848788777 0.145952246259619 0.143976177577646 0.142197635644204 0.140475206839058 0.142096035294749 0.143412419928501 0.150268183943066 0.14559505257214 0.142477820159565 0.167558857602522 0.149961121762185 0.143730641300922 2 0|2 /|- 17847660 17848281 17847940.4 17847465 17851457 - gene protein_coding_gene FALSE TRUE AT2G42880.1 ATMPK20 (Arabidopsis thaliana MAP kinase 20); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 20 (EC 2.7.11.24) (MAP kinase 20) (AtMPK20) (MPK20) [Arabidopsis Thaliana] (GB:Q9SJG9;GB:Q945L8); similar to ATMPK19 (Arabidopsis thaliana MAP kinase 19), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G14720.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to ATMPK18 (Arabidopsis thaliana MAP kinase 8), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G53510.1); similar to HA-tagged mitogen activated protein kinase 20 [synthetic construct] (GB:ABG54347.1); similar to Mitogen-activated protein kinase 7 (MAP kinase 7) (OsMAPK6) (MAP kinase 6) (GB:Q67C40); similar to mitogen-activated protein kinase (MAPK), putative [Musa acuminata] (GB:ABF69963.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.5013023201595 -3.58142992161883 0.00662152183760864 1 4.70288705664657 16.7085304040914 -0.5013023201595 0.177557753097727
AT3G07990_at 4.67462270769787 4.67151430534446 4.01641522342461 3.96794946878771 4.64539631028808 4.76279774251628 4.71708970844523 4.8516601566483 4.64708570060002 4.36951796960828 6.31008195882634 5.61744852627414 5.39045190647873 5.28518581438829 5.94645321057032 4.94845288676841 5.04219782656647 5.85792725290443 4.96397216593642 0.205539973770180 0.206886345069089 0.206267486716451 0.203727429369332 0.210003744614971 0.212101288620054 0.212819327738924 0.204769660985737 0.218507976781369 0.202419161383342 0.201225241323659 0.201133993850006 0.212232985834206 0.203746401660447 0.206008926899103 0.201133993850006 0.210006808465956 0.201133993850006 0.201133993850006 3 3|0 +|/ 2553730 2554590 2554190.7 2552483 2554927 + gene protein_coding_gene FALSE TRUE AT3G07990.1 SCPL27 (serine carboxypeptidase-like 27); serine carboxypeptidase similar to SCPL26 (serine carboxypeptidase-like 26), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G35780.1); similar to putative serine carboxypeptidase II [Oryza sativa (japonica cultivar-group)] (GB:AAV43957.1); similar to Os01g0833500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044713.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.254500472092886 3.57538827039265 0.0066817907191292 1 4.69467519611378 9.64341413700843 0.254500472092886 0.0320272212344448
AT1G71030_at 11.8893179087756 12.0080813786827 12.2999487204746 12.2283687575048 12.6671772366062 12.6024419939015 11.9912709602260 12.1256442811610 12.3713670392847 12.2619039634404 12.5835624139879 12.1665932611359 12.4817665079728 12.3005217385219 11.9505140446319 12.4290681504864 12.3138262447239 12.3154915383667 12.1157204341477 0.0730543824905092 0.0686830551908867 0.0706365754648174 0.0684491251602398 0.0708847070087585 0.0713847930178586 0.0703938946398814 0.0719976724059051 0.0795633816281725 0.0692665194719091 0.0699962025935226 0.0690622425962084 0.0701820624298181 0.0804051469379376 0.0710788563928826 0.068387313698806 0.0855264192192732 0.0706541981430876 0.0694744890596386 1 1 - 26799046 26799573 26799278.636 26798785 26800026 - gene protein_coding_gene FALSE TRUE AT1G71030.1 ATMYBL2 (Arabidopsis myb-like 2); DNA binding / transcription factor Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves. similar to MYB3 (myb domain protein 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G22640.1); similar to myb-like transcription factor 6 [Gossypium herbaceum] (GB:AAN28288.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.256954860048978 3.57371516431155 0.00669858328040494 1 4.69240016474005 24.5101973045512 0.256954860048978 0.0352434198929488
ATCG00530_at 11.3064084408198 11.7825926998764 11.8059156684136 11.6405309751209 11.6356726525153 11.4430129325694 11.7196938353616 12.0877824182273 12.1243047931061 12.1700980032282 13.1744432322891 13.3760353556072 13.0221892834444 12.9521196554756 12.8557244680511 12.9590400790162 12.5412345346457 12.3365840313400 11.9213745537339 0.121469047545273 0.112601372704684 0.114733407486536 0.112891163888374 0.111592410958339 0.118100320243606 0.113957223966750 0.110833439515870 0.124804275281189 0.113635740519014 0.114622731604951 0.113362536245712 0.117974499119273 0.113372609516893 0.113323905395451 0.113565529960551 0.123086465223376 0.115151803743997 0.113405499929027 C C + 60930 61379 61177.909 60741 61430 + gene protein_coding_gene FALSE TRUE ATCG00530.1 Identical to Chloroplast envelope membrane protein (cemA) [Arabidopsis Thaliana] (GB:P56783); similar to proton extrusion protein-related [Arabidopsis thaliana] (TAIR:AT4G31040.1); similar to chloroplast envelope membrane protein [Gossypium hirsutum] (GB:YP_538947.1); contains InterPro domain CemA; (InterPro:IPR004282) 0.368704627605554 3.57039755109487 0.00673201349150516 1 4.68788779642894 24.1647497595329 0.368704627605554 0.113044641757562
AT3G01100_at 4.98114617438985 4.9602070665658 5.79612226138657 5.78666723052684 6.40134345696511 5.64221481498341 5.7484051603356 5.3775081595628 4.71573144180837 4.41057980421034 4.59100493374495 4.48391561517009 5.02929116624067 4.69025738833102 4.23468069550487 4.74011186814061 5.00750027925851 4.81606853532996 4.28740180017751 0.174696726002019 0.174029910356220 0.180893206974645 0.173453562887292 0.173006053009957 0.173432440018145 0.176543505001527 0.173082435571025 0.178865702070659 0.178041547651464 0.171589008251175 0.175453702045892 0.175606475368124 0.173276566360915 0.18444204453553 0.173614577871152 0.183968366353680 0.172344208373316 0.174382587583369 3 3|0 -|/ 35049 38193 36576.4 34730 38536 - gene protein_coding_gene FALSE TRUE AT3G01100.1|AT3G01100.2 HYP1 (HYPOTHETICAL PROTEIN 1) unknown protein, has cDNAs and ESTs associated to it similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69450.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.433818214450824 3.56997873170388 0.00673624628574957 1 4.68731803706974 10.1718725367297 0.433818214450824 0.146266383761777
AT3G06340_at 5.08872698666113 5.48357162055756 5.14399550505607 5.55575612235432 5.9052178551936 5.59939269474516 5.22984682302132 5.40837608316698 4.89159587222977 4.5988421024621 5.28168137682611 5.27505092319292 5.70767976959496 5.64649948763489 4.38536657495599 5.64092361288207 5.53793816230408 5.00380721276432 4.93851405556773 0.223093327814628 0.212949900178064 0.212677872644126 0.217192924938228 0.214839762220643 0.222690695965887 0.212425598068529 0.211523202248037 0.217053687194931 0.217129005628514 0.209244665361825 0.210376243589737 0.212221528230326 0.21775451892898 0.216464264336662 0.209966267683070 0.221680803550988 0.214190643289917 0.216058516668676 3 3 - 1920704 1921182 1920972.636 1920213 1923317 - gene protein_coding_gene FALSE TRUE AT3G06340.1|AT3G06340.2 DNAJ heat shock N-terminal domain-containing protein|heat shock protein binding / unfolded protein binding similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18750.1); similar to heat shock protein DnaJ N-terminal domain-containing protein [Musa acuminata] (GB:ABF69988.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.374338939625878 3.56782156150101 0.00675809232610632 1 4.68438303612269 10.4866199947308 0.374338939625878 0.116198290338674
AT3G14020_at 5.80422017354458 5.37088209662791 4.54188494332342 4.28795412336251 7.9568179588007 7.20554132842285 4.74217774239124 3.81379842203161 3.66470274526044 4.22078565459711 4.23015386012397 4.3712901724211 4.85911160883126 4.11361156623232 3.64644753086649 4.03897602602165 4.29075977205747 3.57049965594417 4.11958645805574 0.25837634177036 0.246902981194654 0.247846058440536 0.242624793640314 0.255234975611499 0.255974856639366 0.240932613690226 0.243555953490833 0.248621490065922 0.246205597540445 0.244629022037884 0.246050134821158 0.240204503540453 0.246604770053831 0.252008818097198 0.244808388570854 0.250183089680927 0.254337623901693 0.241995478970979 3 0|3 /|+ 4643549 4644192 4643847.875 4642975 4644308 + gene protein_coding_gene FALSE TRUE AT3G14020.1 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-6 (AtNF-YA-6) (NFYA6) [Arabidopsis Thaliana] (GB:Q9LVJ7); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT1G54160.1); similar to RAPB protein [Oryza sativa (indica cultivar-group)] (GB:CAA71844.1); similar to Os03g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049132.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.601847317293207 3.56389137517897 0.00679808680454885 1 4.6790339875674 9.53630854524647 0.601847317293207 0.22420882955774
AT1G10670_at 9.5458884519674 9.69182738416048 9.24638620622756 9.35555203346133 9.59211191095243 9.39366516398865 10.1662076599792 10.1613078001379 10.7390716130844 10.5310664576902 10.8838612651896 10.8416264161212 10.4013544010223 10.7567827798544 10.6852893244155 10.3479572962404 9.82531630256475 10.6776562687726 10.5059223783256 0.115434629209282 0.113976893475788 0.119677897728903 0.116412875595982 0.112353186692747 0.118633089943333 0.110191970372916 0.110845386118234 0.116152890135153 0.107939046484206 0.108697927113352 0.115744949058157 0.109751911910197 0.116855888138971 0.109127927626818 0.110508535156044 0.115256599644117 0.111621091733206 0.110441862814462 1 1|0 +|/ 3537202 3538025 3537704.4 3535388 3538282 + gene protein_coding_gene FALSE TRUE AT1G10670.1|AT1G10670.2 ACLA-1 (ATP-citrate lyase A-1) One of the three genes encoding subunit A of the trimeric protein ATP Citrate Lyase. Antisense ACLA-1 plants cause a reduction in cytosolic acetyl-CoA metabolism and have upregulation of stress-related genes and down-regulation of primary metabolism and growth genes, suggesting the mutation restricts normal growth and developmental processes and puts the plant into a state of stress. similar to ACLA-3 (ATP-citrate lyase A-3) [Arabidopsis thaliana] (TAIR:AT1G09430.1); similar to ACLA-2 (ATP-citrate lyase A-2) [Arabidopsis thaliana] (TAIR:AT1G60810.1); similar to ATP citrate synthase, small subunit [Medicago truncatula] (GB:ABE86911.1); similar to Os11g0696200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068510.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP citrate synthase, small subunit; (InterPro:IPR012250) -0.266959319165606 -3.5629434163757 0.00680777085940444 1 4.6777434681962 20.2163686545957 -0.266959319165606 0.0466350916910638
AT3G14090_at 7.1879928435384 7.39315422441285 7.33510994181233 7.68308224401405 7.84487500603304 7.66718492189426 6.79753113079936 7.19428953854254 6.46162924964686 6.21075874048662 6.71840722299074 6.4926466883045 6.73750205632667 7.0863592659907 6.02446911617133 6.83786556900245 6.7894715797915 5.84503741478075 6.40105907423083 0.239451992928847 0.242770137224831 0.239432750342425 0.244699063670655 0.241597113527389 0.254819007695292 0.241571742761119 0.249414275877812 0.255129770621983 0.231682278166990 0.241077723159115 0.234482655483479 0.238941806478964 0.233094753867348 0.242699352384576 0.240614275589079 0.240031023693035 0.236623458258428 0.231067005300778 3 3 - 4669517 4670061 4669747 4669260 4671582 - gene protein_coding_gene FALSE TRUE AT3G14090.1 ATEXO70D3 (exocyst subunit EXO70 family protein D3); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70D1 (exocyst subunit EXO70 family protein D1), protein binding [Arabidopsis thaliana] (TAIR:AT1G72470.1); similar to ATEXO70D2 (exocyst subunit EXO70 family protein D2), protein binding [Arabidopsis thaliana] (TAIR:AT1G54090.1); similar to putative leucine zipper protein [Oryza sativa (japonica cultivar-group)] (GB:BAB86177.1); similar to Os08g0455700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061962.1); similar to Os09g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063276.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.348987635081764 3.56166556590085 0.00682084807237116 1 4.67600364152565 13.8500452575265 0.348987635081764 0.102696959232960
AT2G20450_at 7.50638651472651 7.15208770630877 6.80294014621668 6.71525807980512 6.84116596874532 6.84219542984755 7.30901120627842 7.29724243505865 6.15355047575817 6.25073535437866 5.83306914500159 6.55468094705314 6.19667621935087 6.17783129561942 7.00177384927947 6.04955534205377 6.42496582371426 5.64862543210372 6.47616790677952 0.205769762554143 0.203009519719107 0.205969394088663 0.206056285424164 0.210164303267854 0.205392813205091 0.208868399263318 0.210827748183249 0.214163256058242 0.218639592188946 0.206408022871507 0.206401445959400 0.206086995102394 0.205311508509626 0.201047985159855 0.206444780715639 0.207529842995135 0.213130543084194 0.213454251937569 2 2|0 +|/ 8821177 8822106 8821530.556 8820943 8822334 + gene protein_coding_gene FALSE TRUE AT2G20450.1 60S ribosomal protein L14 (RPL14A) Identical to 60S ribosomal protein L14-1 (RPL14A) [Arabidopsis Thaliana] (GB:Q9SIM4); similar to 60S ribosomal protein L14 (RPL14B) [Arabidopsis thaliana] (TAIR:AT4G27090.1); similar to glycoprotein-like protein [Solanum tuberosum] (GB:ABA40467.1); contains InterPro domain Ribosomal protein L14; (InterPro:IPR002784) -0.286689690819752 -3.56137338086656 0.00682384195210344 1 4.67560579114032 13.3229768537454 -0.286689690819752 0.0631958466524083
AT3G55630_at 9.00997123953627 9.04458622862392 8.59844406508504 8.63133421155751 9.4174783100614 8.7733558993232 9.5499237272802 9.2942048046234 9.09811628843708 9.5238538294891 8.52368169165788 9.12691695016745 8.90016455808448 9.126189341759 8.82347311632685 9.43495626344449 9.18406364480179 8.95472920576714 9.58481767226844 0.111246100146733 0.105224985109128 0.115073148273612 0.108585090685546 0.109944716015006 0.115786520815311 0.113075866775042 0.111741198211975 0.117063076516947 0.112527089782926 0.112782809974720 0.109363095979828 0.108467360303666 0.109530909384696 0.106059221353344 0.106955950652791 0.117715957505535 0.109026189294797 0.106807283551759 3 3 + 20649559 20650332 20649924.545 20647648 20650471 + gene protein_coding_gene FALSE TRUE AT3G55630.1|AT3G55630.2|AT3G55630.3 ATDFD (A. THALIANA DHFS-FPGS HOMOLOG D); tetrahydrofolylpolyglutamate synthase similar to ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT5G05980.2); similar to putative folylpolyglutamate synthetase [Oryza sativa (japonica cultivar-group)] (GB:AAG13624.1); similar to Os03g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048721.1); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645); contains InterPro domain Mur ligase, middle region; (InterPro:IPR013221) -0.381254564369781 -3.56130540468702 0.00682453867054574 1 4.67551323040561 18.2456795323777 -0.381254564369781 0.120215808290643
AT2G36330_at 6.97528661413974 6.89511066140406 7.37084746224723 7.63009951341355 6.80358634197701 6.39986217504164 6.85077414564905 6.52459725429171 5.86243799722259 6.06671064277098 6.29432493050347 5.98130480455261 5.78183432588048 6.29531534304663 5.96984960030514 6.47955294632845 6.66692576761624 6.6933524659841 5.52152907242062 0.208382442972782 0.216621679850528 0.222169600341976 0.214145272868293 0.211716209678158 0.232151463280903 0.222319719421808 0.222416210719965 0.233086176009695 0.216248230026859 0.211212846996774 0.211015785781933 0.209855446779882 0.208382442972782 0.212101229325403 0.208382442972782 0.217400888302286 0.213469443337575 0.214828245628325 2 2 + 15240933 15242352 15241627.2 15240601 15242532 + gene protein_coding_gene FALSE TRUE AT2G36330.1 similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT5G62820.1); similar to Os01g0640700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043680.1); similar to Os01g0661000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043777.1); similar to MtN24 [Medicago truncatula] (GB:CAA75572.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.346535828260566 3.56090654452115 0.00682862828327254 1 4.67497010343883 12.9748705679364 0.346535828260566 0.101355145171152
AT1G04860_at 7.61008746200839 7.56513330713052 7.18981896639483 7.49943093889516 7.64921099899094 7.4320245878519 7.80628273053611 8.06013305124604 7.35822758131763 7.54123585195313 7.24475922655586 6.85935326612714 7.29331546868305 7.33365230759731 6.88388227006045 7.44108644416547 7.01236309366198 7.38748501105298 7.55148741858974 0.213907359868140 0.213564432368475 0.217766859307653 0.211777776308848 0.221009668504627 0.218509961074831 0.218919720038116 0.215312099128225 0.221054118265633 0.215798346207868 0.211028692157132 0.217638068204937 0.217356689824779 0.214404126908164 0.216606204916702 0.214310835539532 0.226873509000488 0.217290292095582 0.213754827620774 1 1 - 1369311 1369901 1369557.091 1369053 1373097 - gene protein_coding_gene FALSE TRUE AT1G04860.1 UBP2 (UBIQUITIN-SPECIFIC PROTEASE 2); ubiquitin-specific protease Encodes a ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15) (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing protease 2) (Deubiquitinating enzyme 2) (AtUBP2) (UBP2) [Arabidopsis Thaliana] (GB:Q8W4N3;GB:Q9MAT4); similar to ubiquitin-specific protease 1, putative (UBP1) [Arabidopsis thaliana] (TAIR:AT2G32780.1); similar to Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; Zinc finger, UBP-type [Medicago truncatula] (GB:ABE89159.1); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.309725456331261 -3.56075378933263 0.00683019520633181 1 4.67476209101931 14.9343339653525 -0.309725456331261 0.0792073241881798
AT3G13450_at 5.77229481973915 5.93391794789386 5.16883402368108 5.13420285468304 7.4100960582281 6.54094964187093 4.06758691645402 4.16540921653954 5.0648527401025 4.62755893832678 4.74313716118346 4.83560759194709 4.26427457439925 4.2876144691035 5.21111677887186 4.37392856080278 4.01190941031982 4.89779375368324 4.58637981819478 0.259287927542413 0.243849009885739 0.244873700658632 0.240335067374280 0.244902981979168 0.261097310405454 0.242466870843300 0.239819322191911 0.23501131623619 0.241126327695080 0.23501131623619 0.238341357350457 0.235948731964024 0.241225973251352 0.23501131623619 0.23501131623619 0.240894271112739 0.244078193082187 0.239793263380314 3 3|0 -|/ 4382479 4383444 4382908.8 4382205 4384443 - gene protein_coding_gene FALSE TRUE AT3G13450.1 DIN4 (DARK INDUCIBLE 4); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) branched chain alpha-keto acid dehydrogenase E1 beta similar to BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G55510.1); similar to 3-methyl-2-oxobutanoate dehydrogenase (lipoamide) [Dictyostelium discoideum AX4] (GB:XP_647496.1); similar to Os07g0170100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058989.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) 0.448647020728337 3.56043438444496 0.00683347280715062 1 4.67432713471430 10.1930464114263 0.448647020728337 0.154038681915908
AT2G41540_at 6.0489274965369 5.63369853200292 3.71912028010256 3.01520272558848 6.08117734096061 5.96895302470423 5.82216836065838 5.29553838063989 8.14520926901148 6.8653091280851 8.7482949971233 8.88341964341983 6.95760169526937 7.59499674170361 8.97950371762085 6.57831385602835 5.47212904264749 6.76725286493446 7.35417221952741 0.224894502172857 0.224713560532671 0.235101624829216 0.237801224270275 0.228824073732635 0.231231298234977 0.224713560532671 0.228593769665877 0.235227808956350 0.227266767750033 0.225319805906832 0.226427545023707 0.233529750519514 0.228107010141458 0.229215638223193 0.224713560532671 0.234833192650343 0.237019053980653 0.230866740302537 2 2 + 17334834 17335689 17335256.545 17333175 17335980 + gene protein_coding_gene FALSE TRUE AT2G41540.1|AT2G41540.2|AT2G41540.3 GPDHC1; NAD binding / glycerol-3-phosphate dehydrogenase (NAD+)|GPDHC1; glycerol-3-phosphate dehydrogenase (NAD+) Encodes a protein with NAD-dependent glycerol-3-phosphate (G3P) dehydrogenase which was shown to complement an Escherichia coli strain: BB20-14, auxotrophic for glycerol/G3P due to a loss-of-function mutation in the gpsA gene. similar to glycerol-3-phosphate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT3G07690.1); similar to Os01g0939600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045350.1); similar to putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:AAU44049.1); similar to putative glycerol-3-phosphate dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:BAB90253.1); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase; (InterPro:IPR006168); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; (InterPro:IPR011128); contains InterPro domain NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; (InterPro:IPR006109) -0.480588825992571 -3.55852326659879 0.00685311867565012 1 4.67172432493103 12.6743912386749 -0.480588825992571 0.169368136160716
AT2G41680_at 10.1828303113985 10.2690335151953 9.96005590827504 9.84294455793961 10.0583502671322 9.64480829515925 10.7783625349556 10.7723102602510 10.6680195576985 10.8662523862065 10.7664080731307 10.8688153953880 10.6352332320688 10.7453643885025 10.9182817285703 10.8089489767024 10.2550983808753 10.6586366925767 10.5405803820542 0.0923398467515154 0.0863910268056411 0.090413336724723 0.0894275772066814 0.0890435080077312 0.096554878013449 0.0870508703313496 0.0863910268056411 0.091521242481764 0.0882233808774955 0.0872810341447491 0.0863910268056411 0.0863910268056411 0.0890789858442814 0.0870552319322927 0.0868432971691205 0.0941566346622513 0.0910957103395642 0.0889293626372987 2 2|0 -|/ 17383435 17384435 17383968.444 17383233 17386132 - gene protein_coding_gene FALSE TRUE AT2G41680.1 thioredoxin reductase, putative / NADPH-dependent thioredoxin reductase, putative similar to NTRA (NADPH-dependent thioredoxin reductase 2) [Arabidopsis thaliana] (TAIR:AT2G17420.1); similar to Os07g0657900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060515.1); similar to thioredoxin reductase [Nostoc sp. PCC 7120] (GB:NP_484780.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin reductase; (InterPro:IPR005982); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.304306740916580 -3.55690350935764 0.0068698161663056 1 4.66951791919176 20.8879448565199 -0.304306740916580 0.0758681698831965
AT3G27080_at 8.13694324941756 7.99322511408972 7.96167992706265 8.0108828194835 8.17578271011514 7.69575816657975 7.978595394509 7.95717384518703 5.99467714228768 6.72807552090932 7.28519249131767 7.7189987106623 7.19327459214474 7.08481205482257 7.32071371864428 7.12466901382517 6.85655498321561 6.42581421052614 6.55762958259883 0.205645220553421 0.205281735909613 0.212678051182778 0.203220576633458 0.205467364756218 0.210323402463562 0.205828170850078 0.204651541513961 0.221040169350162 0.204506073220063 0.206777248842174 0.203220576633458 0.208035739987483 0.210190600407147 0.211997178750163 0.206968567561141 0.217838791401419 0.210150348880746 0.208945270186394 3 3|0 -|/ 9986459 9987528 9986910.222 9986319 9987866 - gene protein_coding_gene FALSE TRUE AT3G27080.1 TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3); protein translocase Component of the TOM complex involved in transport of nuclear-encoded mitochondrial proteins Identical to Mitochondrial import receptor subunit TOM20-3 (Translocase of outer membrane 20 kDa subunit 3) (TOM20-3) [Arabidopsis Thaliana] (GB:P82874;GB:Q9LSC8); similar to TOM20-1 (TRANSLOCASE OUTER MEMBRANE 20-1) [Arabidopsis thaliana] (TAIR:AT3G27070.1); similar to Mitochondrial import receptor subunit TOM20 (Translocase of outer membrane 20 kDa subunit) (GB:P92792); contains InterPro domain Plant specific mitochondrial import receptor subunit TOM20; (InterPro:IPR010547); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.322000572486151 3.55584258117695 0.00688077619432388 1 4.66807253774295 14.7652790552189 0.322000572486151 0.0872096392215186
AT3G17365_at 5.88505645170428 6.16405319719112 6.54159994880397 6.13441759873286 6.8490536992835 6.75997822398145 5.68487564275194 5.98202410618397 4.91279037823748 5.43110026752019 5.63353461528329 4.98081555695221 5.51401113346538 5.30136161487962 5.39557798398618 5.12006532949765 5.21197143000458 5.68142496960268 5.57618148857413 0.221542418369344 0.217530615684383 0.216408481382543 0.229601923243216 0.214960933538836 0.224870703587179 0.225589072294865 0.224040493325006 0.246305351564944 0.224270744773702 0.219261745727759 0.223880919032742 0.21698298317341 0.219133336762484 0.217700353551363 0.220459218469625 0.226975056442957 0.229121981374943 0.219784967742364 3 3|0 -|/ 5947367 5948628 5947816.6 5946957 5948855 - gene protein_coding_gene FALSE TRUE AT3G17365.1 catalytic similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.345207318003815 3.55571517857466 0.00688209358249599 1 4.66789895688433 11.5809003789056 0.345207318003815 0.100887796688749
AT2G39780_at 9.71899246244729 9.9436446885787 10.0556505854141 10.168679898658 10.0123434965290 9.74343993463608 9.7091969334094 9.56020433558573 8.83573091182316 9.05637796292703 9.04475744956975 9.10246568605758 9.33586209375826 9.36313984942277 8.99636043732889 9.481457205784 9.4175565987277 9.28101084460162 8.88985348078318 0.126366337305038 0.126128992223820 0.136159516775094 0.124832723313204 0.128272607150071 0.127004813889320 0.121309581560260 0.125076721438635 0.146304055810329 0.120861916913563 0.119732436062225 0.121108962537223 0.121794529493588 0.127418398079000 0.124916993103647 0.119732436062225 0.127442890386061 0.123985225471509 0.123589636380722 2 2|0 +|/ 16598738 16600399 16599620.6 16598301 16600853 + gene protein_coding_gene FALSE TRUE AT2G39780.1 RNS2 (RIBONUCLEASE 2); endoribonuclease S-like ribonuclease Identical to Ribonuclease 2 precursor (EC 3.1.27.1) (RNS2) [Arabidopsis Thaliana] (GB:P42814;GB:Q42136); similar to ribonuclease T2 family protein [Arabidopsis thaliana] (TAIR:AT1G14220.1); similar to S-like RNase [Antirrhinum majus x Antirrhinum hispanicum] (GB:CAD33235.1); contains InterPro domain Ribonuclease T2; (InterPro:IPR001568) 0.293762179641278 3.55503559689536 0.00688912520369976 1 4.66697301537743 18.9540925698243 0.293762179641278 0.0687338983772624
AT1G29240_at 6.04289944157839 6.79768263237407 7.22557562812702 7.13140492502102 5.68647839042232 5.75321248495355 4.38788266058971 4.12068171050157 4.16950559087094 4.61650896450869 4.17009325915827 4.55103758157915 4.43776066454185 3.82548101746268 3.79100581136114 4.33803235005656 4.59412448914598 4.00478483227828 4.67663273358807 0.237820071017728 0.242697360511770 0.258673500640803 0.250888086249474 0.241393215163671 0.254852707238636 0.233808620256101 0.239369717354742 0.246486122448771 0.242151003836336 0.237623326103238 0.229971552702657 0.231331786342205 0.235561126735401 0.232215782695608 0.229187914280646 0.239785471789044 0.242404996310772 0.229187914280646 1 1 - 10217023 10217576 10217294.444 10216765 10219832 - gene protein_coding_gene FALSE TRUE AT1G29240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34170.1); similar to Protein of unknown function DUF688 [Medicago truncatula] (GB:ABE80249.1); contains InterPro domain Protein of unknown function DUF688; (InterPro:IPR007789) 0.419186075122731 3.55399874920155 0.00689986808566983 1 4.66556016593619 10.2440217827062 0.419186075122731 0.139994225100566
AT3G17040_at 9.39744084829407 9.5153261735476 8.89017060684279 9.2621094947451 9.81743433059747 9.49455456248313 10.3267674511336 10.1873977102594 10.0711907729833 10.4369756671981 10.2988480420143 10.4129894066039 10.0933876567463 10.0132696368991 10.1462927633654 10.4064176470068 9.93823551615105 10.0646646200214 10.5022539622605 0.115007726311778 0.113228813453452 0.121870721074997 0.120327391597562 0.113566825083578 0.117324157313291 0.113889059436798 0.113500114134893 0.123807568621039 0.110570123112769 0.110570123112769 0.111245374855629 0.114755612291288 0.120248592684936 0.111930176941078 0.111261050956417 0.127952945946746 0.114883989451939 0.110570123112769 3 3|0 -|/ 5809456 5810184 5809725.3 5809272 5812683 - gene protein_coding_gene FALSE TRUE AT3G17040.1 HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107); binding It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis. similar to STA1 (STABILIZED1), RNA splicing factor, transesterification mechanism [Arabidopsis thaliana] (TAIR:AT4G03430.1); similar to Os03g0308800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049907.1); similar to TPR Domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95554.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.327854718427225 -3.55329194409677 0.00690720151163428 1 4.66459695762667 19.8656851281954 -0.327854718427225 0.0909007828092735
AT4G02980_at 6.95900403680259 7.1898654241549 6.8438528324947 6.93562545060369 6.77298420051485 6.60061269198273 6.87814585209696 6.5650346386578 5.23682738466477 5.50676145576927 6.11771401720963 6.10102281001312 6.08107260068201 5.758670750751 6.60661550945177 6.19124257138326 6.48029708051776 6.01194517725885 5.6163305911349 0.194980540120880 0.188571253003516 0.190446325001447 0.185891708007467 0.190517462629544 0.182933231821631 0.185711299570313 0.186106782248277 0.192095323234731 0.186237880199526 0.196580170730809 0.182933231821631 0.189874195149994 0.193173539111103 0.194157610309978 0.182933231821631 0.199052907663059 0.188291881571077 0.203143779990121 4 4|0 -|/ 1319962 1321425 1320733.222 1319656 1321477 - gene protein_coding_gene FALSE TRUE AT4G02980.1 ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1) auxin binding protein involved in cell elongation and cell division Identical to Auxin-binding protein 1 precursor (ABP) (ERABP1) [Arabidopsis Thaliana] (GB:P33487); similar to resistant endoplasmic reticulum auxin-binding protein 1 [Sinapis arvensis] (GB:AAG24497.1); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Auxin-binding protein; (InterPro:IPR000526); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.302761196719855 3.54828808334207 0.00695935502256211 1 4.65777584309952 12.6540801618376 0.302761196719855 0.0753274495744737
AT3G26060_at 10.0753854319824 10.1584839668994 9.2409839866131 9.210713303403 9.96977255601544 9.677756535031 10.8190190843507 10.6668544812457 10.7089957664717 10.8441554115843 11.0869061353145 11.3542353938948 10.5921092355954 10.9694827539841 11.5868021573503 10.9278895324936 10.4558142104709 11.0876178710784 10.4351495721154 0.114841901930556 0.112144411829443 0.121522050867234 0.117365840456149 0.114890993276447 0.119133873761768 0.115906647038867 0.115158171676157 0.117736569418540 0.114082310324773 0.111664914964401 0.115503522212285 0.114837067147483 0.117523281894439 0.116248678544466 0.111009032258267 0.117681072445108 0.113308247894132 0.115827708382816 3 3|0 +|/ 9526099 9527295 9526793.4 9525970 9527611 + gene protein_coding_gene FALSE TRUE AT3G26060.1 peroxiredoxin Q, putative encodes periredoxin Q which decomposes peroxides and plays a role in the protection of the photosynthetic apparatus similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to peroxiredoxin Q [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAS46230.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) -0.280144450652491 -3.54748583529065 0.0069677552112183 1 4.6566819110672 20.8125582071909 -0.280144450652491 0.0590035462552244
AT1G78895_at 5.27364137622876 5.52606777435976 5.1196488000008 5.36769094685085 6.5412242740334 5.94039139846778 3.95660223451985 4.64933121645549 5.05402273853619 4.23006695199141 4.90851804642065 5.15556919226045 4.82313214715118 4.88428435990137 4.3604936080732 4.85172100924892 4.14924464169702 4.61299360543158 4.66028217645114 0.237291083645564 0.218489961698109 0.229420497214161 0.230695344312296 0.2225067579387 0.25710111946917 0.224644218540699 0.219323086888937 0.233814666428479 0.232709898517795 0.223981169411164 0.225600817418165 0.221319013554419 0.246678689965179 0.218822415545884 0.219356393184398 0.247914530880226 0.220153115988927 0.223174258174917 1 1|0 -|/ 29663274 29664695 29664178.375 29663009 29664869 - gene protein_coding_gene FALSE TRUE AT1G78895.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G16830.1); similar to Os08g0225100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061282.1) 0.480474412530353 3.54622954196786 0.00698093115607787 1 4.65496866680965 9.9800090185809 0.480474412530353 0.170097644815827
AT1G70700_at 7.57401033898438 7.65677404018246 6.854223562627 6.65802629528916 5.9832031858676 5.57524507659581 7.34554591938448 7.43005035868544 3.66433052720886 5.22001458502052 4.71859495096342 4.60722236497043 5.71193923083555 5.28395177133505 4.10731411814869 7.20779507479506 5.77707825728915 3.56020810527611 4.6456493967473 0.235699196380057 0.237504519585190 0.23480697573985 0.236788240134613 0.231401793268986 0.246615474996486 0.234435742029674 0.249044938152857 0.245818192688508 0.237625051220011 0.232701849094047 0.242665724284481 0.233652060980414 0.231401793268986 0.244649329903642 0.236596228136343 0.246468469729187 0.240882168440354 0.240082753701897 1 1|0 +|/ 26659524 26660435 26659968.667 26658431 26660726 + gene protein_coding_gene FALSE TRUE AT1G70700.1|AT1G70700.2|AT1G70700.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAE46411.1); contains InterPro domain ZIM; (InterPro:IPR010399) -0.311077909835755 -3.54495497791739 0.00699432563176418 1 4.65323027725859 11.7005154241323 -0.311077909835755 0.0809692456562682
AT1G74720_at 5.26909932583511 5.90607035125735 4.69000286326266 5.21285658604938 5.43875579376206 5.9324964268673 6.32367322178772 6.92463344064265 7.09841168914763 6.58347941006037 6.58385488730242 6.94640880827417 6.17100544368672 6.31488835909586 6.46841632612777 7.0681117401897 6.50351410425035 6.1473188083252 6.74812144951726 0.222881388345190 0.222942459874218 0.220375016757853 0.217399984995344 0.219099782667339 0.226480659775899 0.219931243822679 0.216785675933295 0.233354489458635 0.216153607337972 0.216118694438706 0.214100212125238 0.222024187040809 0.216481543371439 0.212283013372934 0.213376717409712 0.212283013372934 0.226843319937316 0.212283013372934 1 1 + 28081538 28082031 28081779.182 28078814 28082491 + gene protein_coding_gene FALSE TRUE AT1G74720.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G03680.1); similar to NTRB (NADPH-dependent thioredoxin reductase B) [Arabidopsis thaliana] (TAIR:AT4G11610.1); similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17980.1); similar to putative phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAB89913.1); similar to putative phosphoribosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAP68393.1); similar to C2 [Medicago truncatula] (GB:ABE85066.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phosphoribosyltransferase C-terminal, plant; (InterPro:IPR013583); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.535952770323629 -3.54233307448324 0.0070219648456332 1 4.64965351480065 12.3799204974655 -0.535952770323629 0.196097822175344
AT4G28270_at 8.87473990806852 8.83708154271508 8.8598790349945 8.92440147632602 9.35490393516731 9.19798069584966 8.71877274922472 8.83618687766683 9.02400163243 8.86917449928648 7.94962172125728 7.51707771894041 8.25589343062686 8.39341023403814 7.3567812923211 8.8796002724847 8.49303579509971 8.38746098876518 8.90527000721288 0.158608320019911 0.150289524074836 0.148617006277880 0.162121228925171 0.153826569938681 0.156486302010558 0.148208710509415 0.14869371891073 0.155016571055704 0.142241907303944 0.152685924135005 0.161325043534607 0.147288933766919 0.152904932505980 0.167272520887237 0.142241907303944 0.159561665648807 0.150591745595055 0.146827161959966 4 4 - 14007621 14008132 14007873.455 14007545 14009025 - gene protein_coding_gene FALSE TRUE AT4G28270.1 zinc finger (C3HC4-type RING finger) family protein similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to ring domain containing protein [Capsicum annuum] (GB:AAR99376.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.255554590892929 -3.54196434613935 0.00702586110070715 1 4.64915042283932 17.4939560581690 -0.255554590892929 0.0362970672487632
AT4G31080_at 8.13126997220331 8.04781987447313 8.20891869612647 8.21948666341961 8.63641932091193 8.61213568588492 7.92837228667221 7.83855365388892 7.19442428966027 6.90723292218696 6.85260115675238 6.82004753543281 7.21685767134145 6.98356488439021 7.13277949875174 6.99569094479812 7.3065269855378 7.09530163129709 6.87582648135538 0.165730780777173 0.168747768675932 0.168823572019424 0.164100045127975 0.168367757319421 0.169099238478834 0.168711224726763 0.169016667123543 0.172163719878379 0.171066567110776 0.162359031546171 0.164630144334174 0.166398237410277 0.17179451146731 0.165831965896804 0.162346657283197 0.170916335364834 0.165382201839907 0.164729213512025 4 4 + 15121201 15122945 15122065.045 15120894 15123492 + gene protein_coding_gene FALSE TRUE AT4G31080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24330.1); similar to Os02g0631000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047497.1); similar to Os04g0672900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054229.1); similar to H0322F07.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67769.1); contains domain FAMILY NOT NAMED (PTHR22166); contains domain SUBFAMILY NOT NAMED (PTHR22166:SF1) 0.245331434456582 3.54007535645915 0.00704585741199661 1 4.64657278852783 15.2243299456668 0.245331434456582 0.0217062448048214
AT3G57280_at 9.5600318093036 9.59509953070041 9.79042806473513 9.80885306062349 9.28489421861342 9.24861354813213 8.75822666432996 8.9911955111475 8.7409366876918 8.6790224159346 9.03871937198915 8.88042111122465 8.49713954379 8.71129155216542 8.87217324443482 8.500859150514 8.44061370456259 9.02066550219925 8.17862391456383 0.116730298897912 0.114093090558836 0.121915426156611 0.120447629961498 0.115247158387522 0.120425910501481 0.114340667448615 0.116038436953126 0.125769664133553 0.110931924424076 0.109820211675091 0.110398605933636 0.112114383013279 0.119401179713756 0.115611969065163 0.111394867665588 0.127180253687210 0.115718208869409 0.110709306170313 3 3|0 +|/ 21205504 21206494 21205985.25 21204759 21206695 + gene protein_coding_gene FALSE TRUE AT3G57280.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20510.1); similar to hypothetical protein 11 [Plantago major] (GB:CAJ34819.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.259716617851123 3.53642494789756 0.00708467016505237 1 4.64159016793872 18.0187160027849 0.259716617851123 0.0413741803874141
AT1G23960_at 8.83627980613671 8.80642798861988 9.10205562082809 9.06996916092334 9.67144191708556 9.15520264235728 8.75266714566039 8.37189931195983 8.50470401786633 8.5194991225572 8.75291830259292 8.56756909203695 8.69200104353533 8.89840574926536 8.58490979118092 8.73273379454148 8.97230107609645 8.72050133742586 8.6985926173276 0.128472282698429 0.122526910957094 0.125874764042999 0.126158668463328 0.128017520432956 0.126891398460612 0.127933813853190 0.131749057357728 0.136756416045321 0.131614995782596 0.131784534520376 0.126401423081751 0.121702821195880 0.122755050404987 0.132033521009565 0.122049941543587 0.130795987639524 0.129767835622523 0.129557792743260 1 1|0 -|/ 8478626 8479437 8478943 8478396 8480305 - gene protein_coding_gene FALSE TRUE AT1G23960.1|AT1G23960.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23970.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) 0.361875521477530 3.53586159006922 0.00709068012377148 1 4.6408210457509 17.6279593371554 0.361875521477530 0.111268605004677
AT4G39140_at 6.2735736259478 6.84611085944333 7.18695651621591 7.13125430168302 7.20206993163453 7.48770850989899 6.11807328837121 6.60751697931599 5.72585623464283 6.07273778028143 5.89280170921802 5.81716479178521 6.48047594521871 5.74620740027435 5.6714484840407 6.33269779253248 6.15314920474423 5.58497349111861 5.9538105019976 0.211067886300689 0.202333093553289 0.205572274884434 0.199823816403623 0.199823816403623 0.218984172994743 0.205828324163724 0.201807586647561 0.220417275391078 0.208179410441248 0.201774847676468 0.203706032590716 0.212307830141011 0.210287841992065 0.207808882919317 0.205542449851985 0.209082842733537 0.21387885409714 0.210584067935116 4 4 - 18229642 18230152 18229952.636 18229325 18232062 - gene protein_coding_gene FALSE TRUE AT4G39140.1|AT4G39140.2|AT4G39140.3|AT4G39140.4|AT4G39140.5 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G21500.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE79651.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.416537653323891 3.53584166811052 0.00709089275182606 1 4.64079384655075 12.7953245139008 0.416537653323891 0.139740558166001
AT3G50560_at 3.88378944508092 4.28004968752762 3.95609656722442 4.3005427850662 4.81923782587258 5.1561561025677 7.00220483172242 7.31281700205758 5.04081492481615 6.27882426824977 6.3151052757664 5.57919145014632 6.30019236731127 6.53282807680644 5.64749021928551 7.1976708187495 5.95529053447086 5.62098559626399 6.2013600843474 0.218182631216681 0.210131929285308 0.214585462346808 0.208606072472110 0.208964157898906 0.220025382190197 0.223107143713986 0.217824881229186 0.239049401835745 0.213369440571475 0.216486491970768 0.209187902248783 0.213445099237704 0.212299966886556 0.22704423485689 0.211901446537561 0.230098672401814 0.214926865846141 0.207504609612193 3 3|0 -|/ 18772232 18773633 18773073.778 18772069 18774997 - gene protein_coding_gene FALSE TRUE AT3G50560.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G06060.1); similar to Os08g0476300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062040.1); similar to short-chain dehydrogenase/reductase SDR [Rubrobacter xylanophilus DSM 9941] (GB:YP_645735.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.37922286076774 -3.5355286252229 0.00709423475871352 1 4.64036644567301 11.0808254733005 -0.37922286076774 0.120600505457768
AT1G55000_at 9.6935445697341 9.92765608405345 9.92082339692262 10.0592634023309 10.3238577951165 10.1499103128276 9.51002837719242 9.77659236156932 9.50113286149844 9.55140050498605 10.0433106446058 9.56322476187348 9.9219702815814 9.76914510387458 9.4289073123415 9.7919579201615 9.83279052339491 9.75323988479105 9.6123795871768 0.130986100151051 0.121194480297358 0.125219109950330 0.125123275470191 0.126341785104916 0.129675034689215 0.124190228393446 0.123700830523108 0.128605318184446 0.126427503186096 0.129420021977220 0.128833855831058 0.125016943395629 0.129856763533026 0.127341572622919 0.123162810757626 0.127930522203384 0.133994491659631 0.126039215089780 1 1|0 +|/ 20518498 20519779 20519127.2 20518301 20520163 + gene protein_coding_gene FALSE TRUE AT1G55000.1|AT1G55000.2|AT1G55000.3 peptidoglycan-binding LysM domain-containing protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95630.1); similar to Os03g0699600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050989.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) 0.29730284909317 3.53374977256325 0.00711325718577763 1 4.63793749629755 19.5792291817842 0.29730284909317 0.072453488795769
AT1G12120_at 8.17155161754419 8.2280366815616 8.01171978431067 8.05031054052965 8.39917093959767 8.44795666230333 7.60735423788598 7.88507540985624 8.0151763714143 7.83187251693675 8.6266480877094 8.21094230793409 8.41544853614992 8.48372505564332 8.15184742106717 8.31218133301281 7.91718070375254 8.0225786288116 8.1072201354043 0.109414956237599 0.108504435216320 0.107565831044177 0.110817485448241 0.110253780880422 0.111617157137943 0.115517644734929 0.108294825131291 0.117529601012989 0.117112042742711 0.110870531910669 0.111426205055832 0.107979268199362 0.111063362650819 0.111774725471677 0.109126255667927 0.119186988990246 0.113385683812081 0.117915360198068 1 1 - 4114961 4115506 4115268.364 4114769 4117592 - gene protein_coding_gene FALSE TRUE AT1G12120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62530.1); similar to Os10g0553900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065339.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) 0.268548831490827 3.53262302617597 0.00712533408302299 1 4.63639874023641 16.2263096594546 0.268548831490827 0.0502123720997959
AT1G12580_at 6.6410225881389 6.89588817992361 6.35739307615987 6.35326764499531 6.53677908354129 5.91570228621346 6.76157150233535 6.47117703771285 6.99534808909926 6.54720024226237 6.6385916999094 6.7376393633553 6.61239183097744 6.57113666248943 6.0398909795065 6.47346260451053 6.3510220999162 5.95297837216322 6.86011865633152 0.172771241887431 0.173991416359124 0.176924207776050 0.169562007199448 0.171261814294299 0.180569923837726 0.177216242580388 0.171674160629721 0.176883874660739 0.175333687409009 0.170689813973524 0.169562007199448 0.169562007199448 0.176751307994873 0.186386096474074 0.172791580037257 0.178685630221310 0.182192197927619 0.176909713367618 1 1 + 4284858 4285612 4285067 4282897 4285827 + gene protein_coding_gene FALSE TRUE AT1G12580.1 PEPKR1 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 1); kinase similar to CPK34 (calcium-dependent protein kinase 34), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19360.1); similar to CDPK-like protein [Solanum tuberosum] (GB:AAM29184.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.390189549297207 -3.53129438883609 0.00713960275680388 1 4.63458403944479 13.1031142736282 -0.390189549297207 0.126583166591314
AT1G04800_at 7.12624280079565 7.09989420499787 5.46803264424016 5.02501542582519 4.80771907848073 5.13730895449404 5.19860528970636 5.27941836403168 6.57240621359754 5.48298025454747 6.53332900224011 7.8256747690188 5.79340446004503 5.97529474857745 7.09395794286403 6.11184231452256 6.10255543915598 6.54510080148808 6.25072310437621 0.315471619289408 0.321997888274975 0.308900436646028 0.310538789030809 0.301949969017644 0.318505801580969 0.294990180213258 0.306147854478264 0.29520629140879 0.296953393925762 0.294990180213258 0.313345885269830 0.297788682492422 0.297954968816779 0.302076429938518 0.294990180213258 0.308113052441749 0.297523467474472 0.294990180213258 1 1 - 1348634 1349209 1349048.364 1348451 1349285 - gene protein_coding_gene FALSE TRUE AT1G04800.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to glycine-rich protein [Brassica oleracea var. alboglabra] (GB:CAA99171.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952) -0.335456364278797 -3.53018746884001 0.00715151338060527 1 4.63307197851828 11.9426203247778 -0.335456364278797 0.0966814673315679
AT1G08810_at 5.71628484653685 5.90328247580557 4.13846182152544 4.15819870211585 5.81714500459312 5.50791708397846 4.79630212555773 5.1972614154097 4.40164061239072 4.82529252876995 4.64764304180758 5.72958261748027 4.60955235308223 4.5630962511075 4.49468379344812 5.28492932025965 4.40937283795171 4.48632179936257 5.59300652543243 0.270510697562737 0.271424610818123 0.266778736745608 0.282765301848444 0.268127143230184 0.281206197987906 0.268217210518441 0.271056555840333 0.276120113097997 0.265570149763195 0.265570149763195 0.269145918354700 0.267101597368528 0.283753969782166 0.267970130271626 0.278219864728831 0.272456304429225 0.267812592129967 0.272122830531287 1 1|0 -|/ 2819294 2819824 2819575.8 2819068 2820398 - gene protein_coding_gene FALSE TRUE AT1G08810.1|AT1G08810.2 MYB60 (myb domain protein 60); DNA binding / transcription factor|MYB60 (myb domain protein 60); DNA binding putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. similar to MYB30 (myb domain protein 30), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G28910.1); similar to MYB transcription factor [Cucumis sativus] (GB:ABC33923.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to AtMYB31/AtY13 (myb domain protein 31), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G74650.1); similar to MYB transcription factor [Cucumis sativus] (GB:ABC33923.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.329842099913077 -3.52833159851649 0.00717152993465649 1 4.63053645936387 10.0134205047788 -0.329842099913077 0.093473217021851
AT4G02570_at 9.66127167559906 9.59724243861872 9.88792938269737 9.9145733379505 10.0420256123928 9.62697135904982 9.56199011585784 9.48952014920753 8.96012042654281 8.98025198680386 9.3070767844134 9.31653700042723 9.30606260061603 9.29411702567235 9.25396572006398 9.2388021051868 9.24117051272636 9.1091110284143 8.9125562236993 0.137892094298266 0.132824553106245 0.132645839202802 0.136903547796287 0.129489302366156 0.133760212239868 0.131297570005725 0.131578989171793 0.135372077959421 0.128477029795148 0.129821876696112 0.126709382332505 0.13207985885806 0.125771239997609 0.129427795109911 0.129853300220635 0.139352690437408 0.127132259031885 0.135778904303575 4 0|4 /|+ 1132760 1133149 1132923.875 1128618 1133696 + gene protein_coding_gene FALSE TRUE AT4G02570.1|AT4G02570.2|AT4G02570.3 ATCUL1 (CULLIN 1) Encodes a cullin that is a component of SCF ubiquitin ligase complexes involved in mediating responses to auxin and jasmonic acid. Homozygous auxin-resistant mutants arrest growth soon after germination, lacking a root and hypocotyl. Heterozygotes display a variety of phenotypes consistent with impaired auxin response. Identical to Cullin-1 (CUL1) [Arabidopsis Thaliana] (GB:Q94AH6;GB:O22770;GB:Q56W31); similar to CUL2 (cullin 2) [Arabidopsis thaliana] (TAIR:AT1G02980.1); similar to cullin-like protein1 [Pisum sativum] (GB:BAC10548.1); similar to Cullin [Medicago truncatula] (GB:ABE84307.1); similar to cullin 1-like protein C [Petunia inflata] (GB:ABB77428.1); contains InterPro domain Cullin; (InterPro:IPR001373) 0.298873981521621 3.52748069298985 0.0071807271818215 1 4.6293737771017 18.8273562886911 0.298873981521621 0.07389486280278
AT2G41120_at 5.49504512794741 6.08346213342577 6.46924211286526 6.56782097286953 5.81907797438528 5.66408103864103 8.00123034531931 7.75236825261116 5.79101751801273 7.68731509863655 6.92355442766558 6.79487830917958 7.05410197358792 6.79924380241318 6.12286241594537 8.09863966535348 7.46267490424597 6.94335527131607 7.69495586400039 0.232797363824491 0.219518920449986 0.217655482359508 0.224931798282273 0.217655482359508 0.219857100340690 0.223893796891299 0.220706435412695 0.232071953424849 0.222302039771577 0.228595627574361 0.218028907986368 0.217655482359508 0.218739612143008 0.223258307749967 0.219694235726953 0.229466294901514 0.228584335605897 0.223135790371414 2 2|0 -|/ 17148540 17149192 17148777.3 17148353 17149535 - gene protein_coding_gene FALSE TRUE AT2G41120.1 similar to Protein of unknown function DUF309 [Medicago truncatula] (GB:ABD28652.1); contains InterPro domain Protein of unknown function DUF309; (InterPro:IPR005500) -0.367909960402735 -3.5270370685994 0.00718552715793549 1 4.62876756584062 13.5228793313064 -0.367909960402735 0.115040195482226
AT1G49820_at 8.42272445493948 8.54343842510208 8.67496592857034 8.64037855074415 8.95927762328741 8.622021037616 8.34919837770653 8.36878967835121 7.42525057638331 7.50217650176261 7.7595886148824 7.37920468299199 7.45672047784331 7.9087764205684 7.42648662704589 7.7365568271914 7.67942781258572 7.82299626971712 7.22414331139152 0.176931389033134 0.174411539452175 0.172286864330402 0.172879148468117 0.181521489060491 0.175349741965126 0.182836967567463 0.180042237667295 0.182912597691317 0.172503217854360 0.169153482989136 0.180597742259762 0.174443314600931 0.174514348214241 0.173103903706892 0.175192279514362 0.181714249464811 0.179192868097521 0.169883544657500 1 1 + 18447831 18448479 18448071.909 18446558 18448766 + gene protein_coding_gene FALSE TRUE AT1G49820.1 ATMTK; S-methyl-5-thioribose kinase encodes 5-methylthioribose kinase, involved in methionine cycle similar to H0818H01.10 [Oryza sativa (indica cultivar-group)] (GB:CAJ86088.1); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575); contains InterPro domain 5-methylthioribose kinase; (InterPro:IPR009212) 0.282742985560226 3.52580145526344 0.00719891425452577 1 4.62707895873131 16.0876375160975 0.282742985560226 0.0623702964320316
AT1G59710_at 5.77343667547529 5.88602239699334 5.59849577006253 5.68780061946046 4.76892297337164 4.82958980955253 4.77723111223293 4.0275258643747 4.54378455670625 3.98815862290537 5.88192306928235 4.59224493540214 4.78527350067634 5.60206177640518 3.72463125035744 4.52289114000777 3.94303220642819 4.91588284090705 3.61527910217795 0.309296664011014 0.293066925850579 0.30094507734118 0.301482220671691 0.292334833304957 0.293187195955666 0.299061863795131 0.289894970627647 0.309847560373744 0.298684572436951 0.292355560393741 0.289894970627647 0.293586928737254 0.289894970627647 0.296622511751488 0.291161892177488 0.307535989063551 0.289894970627647 0.296006671420876 1 1 + 21942605 21943154 21942839.455 21942032 21943849 + gene protein_coding_gene FALSE TRUE AT1G59710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27100.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 0.401033388423087 3.52524117045947 0.00720499326668422 1 4.62631319482574 9.5661614946220 0.401033388423087 0.132518446354355
AT1G70660_at 10.0643289610078 10.0982274237042 10.4492630557797 10.4382972318558 10.4199070527907 10.3751720663655 10.3178195412667 10.3954688724756 10.1291442346720 10.3075311802772 10.6657768475096 10.4155565585614 10.5417693862312 10.7918612051715 10.2100463866341 10.6710079263883 10.4682817374135 10.5141450855795 10.3214649483673 0.0909549053254306 0.0880645812682598 0.0933191903504023 0.091943611142954 0.0930225238523847 0.0945523159555027 0.0905449832207966 0.094846878862505 0.0964193111933826 0.0880645812682598 0.0901129296434458 0.089354091485286 0.0892061273697343 0.0885546243315968 0.0944479806521143 0.0884607426602413 0.0925828906443953 0.093056972406936 0.09104883462329 1 0|1 /|+ 26645142 26645582 26645362.125 26644258 26645812 + gene protein_coding_gene FALSE TRUE AT1G70660.1 MMZ2 (MMS ZWEI HOMOLOGE 2); ubiquitin-protein ligase similar to MMZ1 (MMS ZWEI HOMOLOGE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G23260.1); similar to ubiquitin-conjugating enzyme 2 [Arachis hypogaea] (GB:AAZ20287.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.241895419665839 3.52431897202732 0.00721501079869684 1 4.62505269310157 20.7135700737182 0.241895419665839 0.0166887808672361
AT3G04340_at 6.58542243916758 6.4325357534559 6.009821564596 5.52228288871908 6.58752025601198 5.7996273138872 7.15865198076945 6.70572073995705 6.53188321441203 6.83778893771689 6.47751740900906 6.8077184427644 6.32090510535087 5.87808261175744 7.03043113275048 6.36783335723476 6.09611399110837 6.53306802305158 6.72105609853946 0.219164630850798 0.219893350353279 0.221335666560608 0.227834336759048 0.223689682507797 0.220951542817129 0.224410142399486 0.216567018285884 0.235806671800159 0.216567018285884 0.224990046535042 0.216567018285884 0.219414705042439 0.230428232493772 0.227482500502733 0.217338403662876 0.241518315728351 0.223451448875755 0.219571774596065 3 3|0 -|/ 1146968 1148283 1147996.7 1146807 1152455 - gene protein_coding_gene FALSE TRUE AT3G04340.1 EMB2458 (EMBRYO DEFECTIVE 2458); ATPase similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to putative cell division protein FtsH [Photobacterium profundum 3TCK] (GB:ZP_01220482.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.499360190147508 -3.52387009256521 0.00721989214658108 1 4.62443910162134 12.9181319550794 -0.499360190147508 0.180424762189108
AT1G49480_at 8.11070926671222 8.40276132852945 7.84724866880329 7.86308924967573 8.24855341161915 7.98302617885277 7.7697890948776 8.11688873711237 7.71108417465899 7.1848286127412 6.84719332198388 6.84085221443478 7.0906348897933 6.99328013592937 6.82256999189705 7.27428730534993 7.39012092193249 6.84432142664833 7.75074489653875 0.188058915956738 0.18782200356046 0.187130827376854 0.183446343899843 0.191009846875705 0.20138692151829 0.192524937184885 0.185184566160762 0.199013104681113 0.188102054168776 0.192578254697608 0.183527484221793 0.193559849369216 0.202426060641603 0.185798386164270 0.185890604376302 0.185176297438852 0.189292165788606 0.188825358317696 1 1|0 -|/ 18318271 18319019 18318557 18317846 18320313 - gene protein_coding_gene FALSE TRUE AT1G49480.1 RTV1 (RELATED TO VERNALIZATION1 1); DNA binding / transcription factor similar to VRN1 (REDUCED VERNALIZATION RESPONSE 1) [Arabidopsis thaliana] (TAIR:AT3G18990.1); similar to reduced vernalization response 1 [Brassica rapa] (GB:AAR92199.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.325268049110171 -3.52343576528789 0.00722461856623709 1 4.62384537524453 15.3236549523440 -0.325268049110171 0.0910024373476346
AT1G29070_at 11.0919931264494 11.2431545210118 10.4510011426157 10.3165378816318 11.1046913453963 10.7985847372937 11.4448823667755 11.4170672868032 11.6031382743742 11.6111703156440 11.9330206111066 12.1705146361271 11.4344044969765 11.5177915928807 12.1138915146591 11.6874820009484 11.0167586756393 11.4454501555274 11.5907274266289 0.0895031011260711 0.0859665156731007 0.0856903833187616 0.092965566894727 0.087223150182554 0.0892118695430741 0.0884772049492687 0.0864952404853635 0.092678562137621 0.0892590467621197 0.0873503108480495 0.0864699551821306 0.0856903833187616 0.0895179098175387 0.0885720719093318 0.0856903833187616 0.0949524948916513 0.0889094688252104 0.0890080866485912 1 1|0 +|/ 10149879 10151115 10150371.4 10149777 10151346 + gene protein_coding_gene FALSE TRUE AT1G29070.1 ribosomal protein L34 family protein Identical to 50S ribosomal protein L34, chloroplast precursor (CL34) (RPL34) [Arabidopsis Thaliana] (GB:Q9LP37); similar to 50S ribosomal protein L34, chloroplast precursor (CL34) (GB:P82244); contains InterPro domain Ribosomal protein L34; (InterPro:IPR000271) -0.284167505129077 -3.5221062929409 0.00723910641743224 1 4.62202781936319 22.6167854923466 -0.284167505129077 0.063679665132285
AT1G44770_at 9.83797987759742 10.1657818019057 10.2258009446051 10.3235607575838 10.7572059827932 10.3899769769205 9.80329073600047 9.43589639771427 9.54323835529019 9.73735560113 9.78176243983837 9.63428839593685 9.93888533619526 9.78054729584587 9.39736984284355 10.1479700117108 9.85390120812845 9.50624285966136 9.70227215008935 0.150077528273746 0.150331123703555 0.152889817885798 0.152926689860374 0.151141609172601 0.159369318120930 0.153451984588216 0.154227869644258 0.161123938713678 0.157197170391480 0.16036045464863 0.154458692830306 0.150605144775563 0.155154899519612 0.161044255556098 0.151627769039783 0.15543519307854 0.157953293127378 0.159569100972451 1 0|1 /|- 16910275 16911228 16910646.333 16909979 16911935 - gene protein_coding_gene FALSE TRUE AT1G44770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49710.3); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98409.1) 0.353782258552365 3.52104041190662 0.00725074395378166 1 4.62057044732238 19.8254748306933 0.353782258552365 0.107634829321376
AT4G38810_at 8.86333629581098 8.75157783884914 9.19269333973818 9.04124497927347 9.3843703561822 9.16384229303271 9.37819042204321 9.34920372030538 7.65197063296426 8.31391285298701 8.43997820255004 8.43912143422404 8.71172076897548 8.50870333446669 7.87978591340563 8.65878720302824 9.04806492729045 7.65777289783455 8.0108244956129 0.128132233963033 0.125088325065656 0.122211276176531 0.122336836645758 0.126882980431825 0.126376724438235 0.127821790490712 0.128315035159346 0.146674673407128 0.128069995624003 0.127578526819726 0.121903269291464 0.130411453870304 0.134506783296050 0.123168325839303 0.124293469867861 0.127213081757083 0.139247364408685 0.132816705406536 4 4|0 -|/ 18115618 18116429 18116068.2 18115277 18119071 - gene protein_coding_gene FALSE TRUE AT4G38810.1|AT4G38810.2 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28830.1); similar to 39 kDa EF-Hand containing protein [Solanum tuberosum] (GB:CAA04670.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992)|similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G28830.1); similar to 39 kDa EF-Hand containing protein [Solanum tuberosum] (GB:CAA04670.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.267858257085813 3.52045368093313 0.00725715844713875 1 4.61976814617027 17.3456713201927 0.267858257085813 0.0504238096402568
AT2G20340_at 6.96129040595785 7.1983591529312 7.32561930339635 7.57355989349132 7.30396210755361 7.64325606741217 8.84403318350134 8.86288430043497 6.61039855471464 7.58519640331587 7.05263929801145 6.7436738995265 7.7183177082666 7.5244606069778 6.63628338936787 7.39249465182923 6.740478659241 6.42587449023542 7.2547993734003 0.184796778391663 0.183529416475318 0.188441588632939 0.191535926719992 0.18660883183471 0.192695644068461 0.202128880757813 0.183534829557833 0.197171125816294 0.194980928046369 0.19793371824316 0.188684037105658 0.186096631635494 0.186296201500225 0.188727220396467 0.193979653843219 0.208931742418741 0.189716992098191 0.194025307791404 2 2|0 +|/ 8788553 8789318 8788979.333 8786816 8789853 + gene protein_coding_gene FALSE TRUE AT2G20340.1 tyrosine decarboxylase, putative Identical to Tyrosine decarboxylase 1 (EC 4.1.1.25) (ELI5) [Arabidopsis Thaliana] (GB:Q8RY79;GB:Q9SK68;GB:Q9SMY2;GB:Q9SMY3); similar to tyrosine decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT4G28680.1); similar to Os07g0437500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059509.1); similar to tyrosine/dopa decarboxylase [Thalictrum flavum subsp. glaucum] (GB:AAG60665.1); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129); contains InterPro domain Aromatic-L-amino-acid decarboxylase; (InterPro:IPR010977) -0.312948011810631 -3.52015449482376 0.00726043163476853 1 4.61935901789743 14.8038251927060 -0.312948011810631 0.0835608350676277
AT3G06750_at 8.74470397122908 9.42711340069184 8.80512806880276 9.14610472947147 9.94748928224711 9.96284396977031 9.43426537322835 9.64048711512748 9.75568813783183 9.67516642574485 10.8640560181068 10.7408146747685 10.7021455309005 10.3610208406877 10.5838846552000 10.5571241537763 9.6944477282850 10.3937641934848 10.0399515482032 0.125618964854177 0.112839471186407 0.123280489108003 0.114733947569035 0.112839471186407 0.119213299161759 0.117024073371325 0.114317573394279 0.124229752665223 0.115191765361536 0.113010145278746 0.112839471186407 0.112839471186407 0.121107081992995 0.112839471186407 0.113250696019502 0.120827762970076 0.114624469568841 0.113607076477810 3 3 - 2129803 2130168 2129992.727 2129629 2130321 - gene protein_coding_gene FALSE TRUE AT3G06750.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G49280.1); similar to OJ1116_C07.3 [Oryza sativa (japonica cultivar-group)] (GB:BAC00686.1); similar to Os01g0309100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042851.1) 0.408652117322478 3.51867998119954 0.0072765860527437 1 4.61734248084214 19.5438966196516 0.408652117322478 0.136780077309298
AT2G20570_at 10.2440568803752 10.2220333717092 10.5050624551993 10.4031305687817 10.807482550306 10.4287148229308 11.3767514842279 11.1986585953468 10.4001679818049 10.6721500519761 10.3665995718415 9.95355313652827 10.3719456382831 10.2535522709799 9.83278218499973 10.1136339892408 10.3120780154999 10.100000912784 10.5379256984143 0.0833492290131475 0.0849566720416253 0.0886593465719196 0.0856955018438317 0.0826847517254412 0.0849539514595422 0.0838917436932696 0.082361739626211 0.0965670757204317 0.082452138070834 0.0847153827779437 0.0857391744203352 0.0874204732017647 0.0873205771726012 0.08648785870269 0.085408719215284 0.086289706689856 0.0872707063611317 0.0830962499742046 2 2|0 +|/ 8863711 8864555 8864073.75 8862439 8864837 + gene protein_coding_gene FALSE TRUE AT2G20570.1 GPRI1 (GOLDEN2-LIKE 1); transcription factor Encodes a protein containing a GARP DNA-binding domain which interacts with the Pro-rich regions of GBF1 and GBF3. Transactivates transcription in yeast. similar to GLK2 (GOLDEN2-LIKE 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G44190.1); similar to Homeodomain-related [Medicago truncatula] (GB:ABE89013.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.299003589661236 -3.51602186997353 0.0073058036277329 1 4.61370649524105 20.9981194039853 -0.299003589661236 0.0746460039344073
AT3G51730_at 11.5419193348327 11.8444823025560 12.1629141578297 12.3482046529349 12.4547025562124 12.0797820525454 11.9830522607752 12.1641687085912 11.4410132902178 11.5349486842861 11.7726184005789 11.4370055276551 12.0887217891617 11.9191467349933 11.3008769023367 11.9694383210412 11.6630279451391 11.7306013920667 11.3808596496085 0.0913670514706827 0.0862018089440823 0.0889449799920507 0.0873797125072733 0.0881941086944339 0.0926655978483147 0.0932854774741236 0.0881787024344278 0.0930472382767244 0.0862018089440823 0.0871154603462325 0.0862018089440823 0.0878542786758476 0.0871430463387666 0.0907506349239596 0.0862018089440823 0.0930754064965191 0.0924941061043705 0.0873635529677408 3 3|0 +|/ 19197991 19199290 19198472.3 19197645 19199670 + gene protein_coding_gene FALSE TRUE AT3G51730.1 saposin B domain-containing protein similar to saposin B domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G01800.1); similar to Os01g0166700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042117.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68299.1); contains InterPro domain Saposin-like; (InterPro:IPR011001); contains InterPro domain Saposin B; (InterPro:IPR008139); contains InterPro domain Saposin-like type B, 2; (InterPro:IPR008138); contains InterPro domain Saposin; (InterPro:IPR008373); contains InterPro domain Saposin-like type B, 1; (InterPro:IPR007856) 0.330450477554653 3.51341010915319 0.00733463238630478 1 4.61013295227079 23.6661300039476 0.330450477554653 0.0946666697475988
AT3G53340_at 4.52837502116049 5.30696549114444 5.40286278528563 5.78793786746962 5.69761901309537 5.00099557137907 3.99463010910571 4.81187931221766 5.24417234874204 4.99154972681222 5.41132000798858 5.50889430027513 5.80420124860591 5.81619037031749 5.43014314143373 5.55651503526962 4.91411347512969 5.68563567019933 4.9896123737576 0.256341418177277 0.249974053969128 0.264878589747489 0.257879194871596 0.246971506511058 0.254639307435486 0.250597502363694 0.249485553566849 0.256430299336341 0.247581744011818 0.24466622185535 0.241354666646302 0.240878908517688 0.250102864893979 0.244246976431591 0.240911955520391 0.262242928067339 0.247191114288076 0.246988149662811 3 3|0 -|/ 19785364 19786501 19785831.333 19785360 19786969 - gene protein_coding_gene FALSE TRUE AT3G53340.1 CCAAT-box binding transcription factor, putative Identical to Nuclear transcription factor Y subunit B-10 (AtNF-YB-10) (NFYB10) [Arabidopsis Thaliana] (GB:Q67XJ2;GB:Q9LFI3); similar to CCAAT-box binding transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G37060.3); similar to transcription factor NF-Y CCAAT-binding-like protein-like [Solanum tuberosum] (GB:ABB55377.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-like transcription factor CBF/NF-Y/archaeal histone, subunit A; (InterPro:IPR003956); contains InterPro domain Histone-like transcription factor/archaeal histone/DNA topoisomerase; (InterPro:IPR003957); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.626328249474416 3.51306120705326 0.00733849267044081 1 4.609655494895 10.3619022159854 0.626328249474416 0.239020155899414
AT2G14750_at 11.2150861533467 11.2087227082578 11.3368637991383 11.1619198491067 11.3655966062087 11.0673864395830 11.5023826451561 11.4742272986137 9.95378245508061 11.0640917159642 11.2594968045197 11.0826169889473 11.1034802321065 11.2700575488804 10.4211866031073 11.1249814434344 11.4117801199886 11.2053166779368 10.287946837353 0.0982348946229575 0.0936854813939179 0.095727924256662 0.101203426499410 0.101193815475670 0.101718771764447 0.0958942100997757 0.0959192849297095 0.108262560026910 0.0962345890775546 0.0960843008370115 0.0950023948244883 0.0955644736325212 0.098239286080196 0.0988630565035769 0.0928652699309631 0.106749692355054 0.0952780449362108 0.0995948402769431 2 2|0 +|/ 6321600 6322512 6322045 6321114 6322848 + gene protein_coding_gene FALSE TRUE AT2G14750.1 APK (APS KINASE); ATP binding / kinase/ transferase, transferring phosphorus-containing groups Encodes a functional APS kinase Identical to Adenylyl-sulfate kinase 1, chloroplast precursor (EC 2.7.1.25) (APS kinase) (Adenosine-5'-phosphosulfate kinase) (ATP adenosine-5'- phosphosulfate 3'-phosphotransferase) (AKN1) [Arabidopsis Thaliana] (GB:Q43295); similar to AKN2 (APS-KINASE 2), ATP binding / kinase/ transferase, transferring phosphorus-containing groups [Arabidopsis thaliana] (TAIR:AT4G39940.1); similar to Adenylyl-sulfate kinase, chloroplast precursor (APS kinase) (Adenosine-5'-phosphosulfate kinase) (ATP adenosine-5'-phosphosulfate 3'-phosphotransferase) (GB:O49204); contains InterPro domain Adenylylsulfate kinase; (InterPro:IPR002891) 0.278713927532416 3.51286485775936 0.00734066603972427 1 4.60938679196270 22.0640922983419 0.278713927532416 0.0600397203636251
AT3G09560_at 6.33285368141582 6.55609718812781 6.17346197959041 6.26060772747523 6.58560760714536 5.96165010725388 7.63206134161013 7.32826411277454 5.14330175178002 5.67958632395126 5.27407610613143 5.44819574637881 5.22388693070234 5.57726543106191 4.45300833717594 6.16263519715892 5.33373522896895 5.05855073185981 5.30845924791145 0.269054226691894 0.264879540930844 0.265915934498243 0.263221907575782 0.263930313827501 0.262559536177977 0.267454358827284 0.261652669889322 0.272096642183855 0.266279609867023 0.263628164514303 0.266972089203102 0.259408073037936 0.262816911235916 0.265377855615385 0.258063042850418 0.268653623090005 0.268028901991186 0.258180883313557 3 3 - 2935125 2936237 2935748.091 2934622 2939461 - gene protein_coding_gene FALSE TRUE AT3G09560.1|AT3G09560.2 lipin family protein similar to lipin family protein [Arabidopsis thaliana] (TAIR:AT5G42870.1); similar to lipin, N-terminal conserved re (GB:ABA94690.1); contains InterPro domain LNS2, Lipin/Ned1/Smp2; (InterPro:IPR013209); contains InterPro domain Lipin, N-terminal conserved region; (InterPro:IPR007651) -0.388841893241834 -3.51088653932473 0.00736260178449059 1 4.60667917487756 11.9505929622878 -0.388841893241834 0.127056512911278
AT1G56510_at 7.37756018939708 7.23739196208271 6.71961350078921 7.28533166880748 7.59197177406012 5.97183006542497 7.9870635036696 7.16878261282673 7.37305790503581 6.15605444191217 4.76655145177828 5.26805541459099 5.57957256842943 5.91983305250955 4.93814171394633 5.89283726157312 5.24976063076607 5.25403219170688 5.89790651024122 0.267931762044482 0.258895185725105 0.270524268217508 0.258103595352726 0.255389970131843 0.28307167031147 0.255466362766025 0.259532291423442 0.262779356004238 0.264691445783041 0.255389970131843 0.257935395911813 0.255389970131843 0.25652894706641 0.272298831745426 0.257274979802003 0.265100757322883 0.273729557189516 0.255389970131843 1 1 + 21175458 21175901 21175658.364 21171254 21177297 + gene protein_coding_gene FALSE TRUE AT1G56510.1 disease resistance protein (TIR-NBS-LRR class), putative similar to RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G64070.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56540.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G56520.1); similar to TIR-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81414.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.8337938657287 -3.51063005964446 0.0073654507134715 1 4.60632810522157 13.0845786536617 -0.8337938657287 0.329900789712992
AT1G15550_at 6.31268337248412 6.87094243591183 6.02554407224097 6.12817261361397 7.17256708639546 6.45340200509534 6.11037101075525 6.47586733131203 4.30607674348061 6.09341803532995 4.51324801025243 5.45830578877433 4.18773959895005 3.45099505938801 5.54188449893996 4.39846042991139 3.14764619934369 3.67355904367748 5.35808316940963 0.27565099133916 0.272584973035763 0.27371796138971 0.278103277232126 0.26937876828484 0.27334070222238 0.268342267177713 0.274169026189139 0.276319704791033 0.266792536716146 0.273039537728844 0.266027681301068 0.27211155890682 0.279720111018864 0.271271092148083 0.271100703550428 0.276414567789469 0.291076254094075 0.267321758352577 1 1 - 5344643 5345027 5344814 5344473 5346161 - gene protein_coding_gene FALSE TRUE AT1G15550.1 GA4 (GA REQUIRING 4); gibberellin 3-beta-dioxygenase Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Identical to Gibberellin 3-beta-dioxygenase 1 (EC 1.14.11.15) (Gibberellin 3 beta- hydroxylase 1) (GA 3-oxidase 1) (AtGA3ox1) (GA4) [Arabidopsis Thaliana] (GB:Q39103); similar to GA4H (gibberellin 3 beta-hydroxylase), gibberellin 3-beta-dioxygenase [Arabidopsis thaliana] (TAIR:AT1G80340.1); similar to (GB:BAD91162.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.476795373682385 -3.50974309561400 0.00737531191994685 1 4.6051139574842 11.2181966466735 -0.476795373682385 0.170699963690508
AT1G10830_at 6.41640543385833 6.62314256273439 6.5802659396309 6.7191291417667 6.8149046863788 6.94902896377913 6.89415669699268 7.28632983596198 6.85637405560238 6.72065602285505 7.38352254287143 7.38358730934661 7.17950811960504 7.47018764391022 7.57245926439627 7.40401878662308 7.14540996702089 7.54866144799287 6.59007659323675 0.143642364073883 0.136798528844099 0.139142683785325 0.13909519143686 0.138596834575938 0.135905192545613 0.143005911080458 0.128607967478610 0.148795631014277 0.142989750734451 0.136294460117239 0.131916507631998 0.131295203362374 0.141356375610671 0.134782243514084 0.128529972733472 0.137510947158295 0.138300493770257 0.137090649424804 1 1|0 -|/ 3605772 3606823 3606349.4 3605577 3607494 - gene protein_coding_gene FALSE TRUE AT1G10830.1 sodium symporter-related similar to Os12g0405200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066625.1); similar to NnrU [Medicago truncatula] (GB:ABE92591.1); contains InterPro domain NnrU; (InterPro:IPR009915); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.312187022579056 3.50950394335724 0.00737797318336666 1 4.60478656793145 13.8395645455306 0.312187022579056 0.0836791009590053
AT3G22630_at 8.88931868312914 8.88940057496863 9.2401772464825 9.27181828543316 8.82057992090668 8.62592172555595 8.56522453863717 8.72704897983402 7.89119436676805 7.87773718376831 8.27907948889854 8.42803274371157 8.15973429683347 8.12385303378756 8.4376349762376 8.20766737390442 7.76084970416139 7.88795831622923 7.81608122974179 0.182614173106931 0.173694655653673 0.182886352937560 0.184333258106030 0.175538283474800 0.182079903763923 0.180264296248522 0.177832995248637 0.188500681573616 0.188193968403230 0.175002747811975 0.175509434152762 0.179993559367818 0.187271099557539 0.177881528393483 0.177959833316708 0.186738001426361 0.177526132397465 0.183587188978246 3 3 - 8009737 8010732 8010138.273 8009547 8010851 - gene protein_coding_gene FALSE TRUE AT3G22630.1 PBD1 (PROTEASOME SUBUNIT PRGB); peptidase Encodes 20S proteasome beta subunit PBD1 (PBD1). Identical to Proteasome subunit beta type 2-A (EC 3.4.25.1) (Proteasome subunit beta type 4) (20S proteasome beta subunit D-1) (Proteasome component GB) (PBD1) [Arabidopsis Thaliana] (GB:O23714); similar to PBD2 (20S PROTEASOME BETA SUBUNIT 2), peptidase [Arabidopsis thaliana] (TAIR:AT4G14800.1); similar to 20S proteasome beta 4 subunit [Triticum aestivum] (GB:AAU82106.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.260403207706710 3.50921679589137 0.0073811698720977 1 4.60439346443144 16.8898223286083 0.260403207706710 0.0441476404273828
AT4G29520_at 8.30293454464634 7.91102420646055 8.55399342182488 8.4503792314599 6.99002530886562 6.41315683525508 4.43116925675181 4.36681919133296 4.68019757126705 4.16941806866371 3.57576483961388 4.68390661900671 3.42826765557791 3.56637883895576 3.98072325104072 3.56704145718562 3.27356422593033 3.62409411429451 4.05501004654799 0.313812992758774 0.322801155708293 0.316027835909138 0.309979157204568 0.306907269100002 0.310719701367217 0.301440634260328 0.306041095973630 0.296780615514439 0.30368504232176 0.303307194040513 0.299112365024653 0.300696955777319 0.311941342288709 0.295939715877595 0.302888202792796 0.304346174187605 0.300539133670320 0.30092070599743 4 4|0 -|/ 14494066 14495041 14494590.222 14493917 14495751 - gene protein_coding_gene FALSE TRUE AT4G29520.1 similar to Saposin B [Medicago truncatula] (GB:ABE80541.1); contains InterPro domain Saposin B; (InterPro:IPR008139) 0.379913814630607 3.50823494771255 0.00739211141423758 1 4.60304923253684 10.9344425099214 0.379913814630607 0.122520719702356
AT3G27430_at 9.4755507610018 9.51461183355461 9.91532604660617 9.61663952850163 9.53506383001598 9.5333853842191 9.52405091358678 9.48781519180394 8.73116114151832 8.8531975094945 8.96428597505513 9.27131828708653 9.1116947851753 9.05364015393813 9.38531601239527 9.01101094236042 9.17104833872988 9.05893199666528 8.63448240938241 0.132995254901893 0.136457395812019 0.141707811595266 0.141569170598664 0.133814262408125 0.141923569989029 0.139396351640260 0.134512047499523 0.148946549157982 0.137032128667152 0.143319685742694 0.132995254901893 0.139565163427871 0.139580159717207 0.137815175286294 0.132995254901893 0.147001594726097 0.142051743992145 0.150622910074891 3 3|0 +|/ 10154894 10156228 10155362.9 10153754 10156579 + gene protein_coding_gene FALSE TRUE AT3G27430.1|AT3G27430.2 PBB1 (20S proteasome beta subunit B 1); peptidase Encodes 20S proteasome beta subunit PBB1 (PBB1). Identical to Proteasome subunit beta type 7-A precursor (EC 3.4.25.1) (Proteasome subunit beta type 2) (20S proteasome beta subunit B-1) (Proteasome component FA) (Proteasome component FB) (PBB1) [Arabidopsis Thaliana] (GB:O23710;GB:O81152;GB:Q3EAZ2); similar to PBB2 (20S proteasome beta subunit B 2), peptidase [Arabidopsis thaliana] (TAIR:AT5G40580.2); similar to Os05g0187000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054834.1); similar to proteasome subunit beta type 7 [Dictyostelium discoideum AX4] (GB:XP_638961.1); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.269194323488138 3.50723370813642 0.00740328668236038 1 4.60167831449091 18.5093151852733 0.269194323488138 0.0525058368356994
AT3G53540_at 7.49033810801898 7.92115299471284 5.62730517435163 6.23669490773396 7.386027661736 7.5079227250878 6.04613439564921 6.47275342298739 5.40351819441049 5.8356066547526 5.18858633235105 6.42536435293709 5.9135921779082 4.93401058589966 5.32514479364634 6.20978931353995 5.21575246046955 4.78704876204896 6.98521342275787 0.235624365583499 0.236146285403701 0.236687425237739 0.234084506806888 0.23087584510837 0.234480619157335 0.232621413668208 0.226889954828865 0.243747358121636 0.232669454131544 0.227646968497228 0.229893465869570 0.232547901355877 0.235484655371102 0.232952418124238 0.230282755292246 0.240024916810472 0.235330474067089 0.234408457620443 3 3 - 19857935 19858353 19858132.455 19857625 19861946 - gene protein_coding_gene FALSE TRUE AT3G53540.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28760.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95302.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95303.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726) -0.433987719869157 -3.50521851621962 0.00742583320872506 1 4.59891865056554 12.6233864344466 -0.433987719869157 0.150250870240750
AT4G27300_at 8.33206508536001 8.44727510566827 7.15190956979369 7.06692532969073 9.0043320248096 8.12913443421009 6.65631915349161 5.96161034196879 7.23666346748234 8.65494736091751 6.80985966071808 7.42759102095362 6.56108162315439 8.07384313514015 5.3988282616164 5.93309284181665 5.92026611714832 6.85851040197086 8.61031877624867 0.200249793921963 0.200249793921963 0.211563625004813 0.203787550770284 0.201301388801379 0.214672634297950 0.212133573083957 0.206468868587299 0.236209161026140 0.202354701436413 0.209264602837363 0.200249793921963 0.203797512799067 0.203571516258980 0.206328321394804 0.205107539349613 0.206916059526947 0.206256245985071 0.205248901892882 4 0|4 /|- 13669322 13669907 13669524.667 13669314 13672354 - gene protein_coding_gene FALSE TRUE AT4G27300.1 S-locus protein kinase, putative similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G27290.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82224.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE82222.1); similar to EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like; Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE86763.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.527833908698753 -3.50503863701147 0.00742784926734665 1 4.59867229126761 14.9887933811396 -0.527833908698753 0.194952574964197
AT3G13560_at 5.88802572465369 6.36381436261587 6.2380785814508 5.8492895839401 4.61082819345679 4.69341026504678 4.02703060414239 4.30264128218486 3.99769659211194 3.81386376240708 4.48839428823792 5.33789100318933 3.81492990137600 4.40286890984376 5.75346708122886 3.92222191458654 3.52825609592914 4.38806834682364 3.9397560120383 0.233777331459259 0.233601222729702 0.228471871121316 0.229233384560455 0.236068170828880 0.238340222665103 0.231275545133920 0.233337538480031 0.240961916467941 0.236560241532863 0.233473646769326 0.234590128382579 0.234774009709048 0.241663025790671 0.229535151573610 0.229022109123188 0.251229544046597 0.231308678785425 0.233283277774905 3 3 - 4425511 4426154 4425874.182 4425234 4428186 - gene protein_coding_gene FALSE TRUE AT3G13560.1|AT3G13560.2|AT3G13560.3 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 4 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 4) ((1->3)-beta-glucanase 4) (Beta- 1,3-endoglucanase 4) (Beta-1,3-glucanase 4) [Arabidopsis Thaliana] (GB:Q94CD8;GB:Q9LJD6); similar to glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative [Arabidopsis thaliana] (TAIR:AT2G01630.1); similar to Glycoside hydrolase, family 17; Virulence factor, pectin lyase fold [Medicago truncatula] (GB:ABE78694.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.369965199853603 3.50471936147606 0.0074314290814096 1 4.59823500625964 9.43244864877191 0.369965199853603 0.117411277512818
AT2G17240_at 7.26768810744951 7.19066907159541 6.7248470829971 6.80230248453906 7.2769342579413 6.3314148719722 7.64545471284352 7.82069317299041 7.76484931602743 7.74780654697203 7.29233032450158 7.60911629714748 7.46418990633898 7.1389341321747 8.0099649623741 7.38493885293565 7.3096159120849 7.58160107547267 7.63316910345111 0.187974935836941 0.186803737496416 0.191732825835046 0.181669346663837 0.185741948446586 0.191380382284836 0.188671812685480 0.183399991359037 0.186929209213348 0.185168147095262 0.182457892366193 0.183941086847027 0.181669346663837 0.188272952273125 0.182517308665875 0.181669346663837 0.18827133359405 0.192866505567055 0.182634913911099 2 2|0 +|/ 7505290 7506054 7505670.4 7505212 7506288 + gene protein_coding_gene FALSE TRUE AT2G17240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24506.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77731.1) -0.469345073897698 -3.50443973065358 0.00743456588268046 1 4.59785200771061 14.7270561811389 -0.469345073897698 0.167483185024339
AT1G75340_at 5.26062108898853 5.5534729868005 5.23542384479656 4.98617687065896 5.06603965222906 5.05533225605936 5.95911949392487 5.27473620065297 5.63131617741001 5.43859599066072 5.35638674967581 5.34364858768886 4.99835635102692 5.02434414003836 4.99439973777119 4.85186857980381 5.60453055748161 5.06261594599714 5.54487058260913 0.229132329403657 0.228638590684562 0.246605851004983 0.245309182930742 0.233648022291156 0.24023480961556 0.233571737902131 0.232442134098560 0.249006977114754 0.227983113166364 0.227385767151310 0.231814154364817 0.225781768192864 0.229646175904356 0.2314232716807 0.233422297891126 0.236927869656019 0.236234436053721 0.231824972894640 1 1|0 -|/ 28273143 28273827 28273368.625 28272631 28275609 - gene protein_coding_gene FALSE TRUE AT1G75340.1 zinc finger (CCCH-type) family protein similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to Os06g0704300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058507.1); similar to hypothetical protein AN4595.2 [Asper (GB:XP_662199.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.404993186181777 -3.50263383590355 0.0074548574633786 1 4.59537828929513 10.6452551733032 -0.404993186181777 0.135865152481902
AT2G24220_at 5.36161117252743 5.66379144747696 4.47824973862552 5.18356267087213 6.16877629434108 5.69408747617809 5.89419155772158 5.80759987846914 3.66506352476201 4.44066401840316 5.25721960292041 5.12898719220557 5.43341988414058 5.31179692865379 5.18391565495018 5.46129106628936 5.8497209646454 5.66788402928634 4.54534711403928 0.210672503118041 0.204141902324902 0.210868085096048 0.208135750330783 0.212875000343827 0.216879020651293 0.211897176048944 0.207178841036602 0.212139330031319 0.211458716224508 0.210412036818030 0.207442139256406 0.218632018528457 0.208797097928441 0.208846618233474 0.204151460876150 0.207668154456946 0.210899173839103 0.212927123618653 2 2 + 10308280 10308732 10308487.364 10307196 10308867 + gene protein_coding_gene FALSE TRUE AT2G24220.1 ATPUP5 (Arabidopsis thaliana purine permease 5); purine transporter Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP11 (Arabidopsis thaliana purine permease 11), purine transporter [Arabidopsis thaliana] (TAIR:AT1G44750.1); similar to Os09g0467400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063425.1); similar to Os09g0557500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063904.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD19737.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.447062530303532 3.50207452226007 0.00746115392889137 1 4.59461204884125 10.3458859300871 0.447062530303532 0.156861127421377
AT1G14290_at 6.70085948075994 7.23375602521088 5.03716434893394 5.64327556996975 6.03751980310359 5.65329304808663 7.4453140022458 7.23573137931999 7.85492232381165 7.02181702918179 9.23922828925392 8.81374094649307 8.60368846139588 8.83232793360867 8.14444604003752 8.01661297755034 6.81309401468912 8.5201893487566 8.26370063100598 0.297939246377791 0.276671853758055 0.293289009958886 0.282600535255498 0.278945639204413 0.275841013915286 0.290019457550628 0.275841013915286 0.292292280202645 0.278592636013981 0.280603987877827 0.277831676479657 0.281551756691051 0.284459201966711 0.278131422333966 0.275841013915286 0.294147148551212 0.284771625439491 0.277405415746692 1 1 - 4880373 4881569 4880726.455 4880046 4881955 - gene protein_coding_gene FALSE TRUE AT1G14290.1 acid phosphatase, putative similar to acid phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G69640.1); similar to Sterol desaturase family protein [Solanum demissum] (GB:AAU93587.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088); contains InterPro domain Molybdopterin binding domain; (InterPro:IPR001453) -0.450833011277003 -3.49915002620084 0.00749416791546531 1 4.59060488629558 14.4165622052736 -0.450833011277003 0.158881204526196
AT4G00330_at 9.37434120263009 9.46136779211076 9.78994032740458 9.73928725132802 9.5647726797579 9.64543735593032 8.3405526935184 8.81208330640489 9.87418106791488 9.19707868151396 9.86148014371532 9.19986813463747 9.3446805694244 9.764555514013 8.98033524803147 9.40819467819732 8.833064400037 9.72734960647214 9.28611925202773 0.122997254456281 0.119692996950543 0.118792881549223 0.125288129790308 0.121884583953266 0.12864541007483 0.133372256934913 0.126826407848617 0.138089870786449 0.132373268799089 0.122713619435849 0.124962880430645 0.121780840412335 0.129332177134066 0.127722162032033 0.118893636147485 0.141577383187005 0.122588920374251 0.131342012294687 4 4 - 142862 143500 143186.222 142601 144523 - gene protein_coding_gene FALSE TRUE AT4G00330.1 CRCK2 (calmodulin-binding receptor-like cytoplasmic kinase 2); kinase high overall homology to CRCK1 similar to CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G58940.1); similar to Os03g0148700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048968.1); similar to calcium/calmodulin-regulated receptor-like kinase [Medicago sativa] (GB:AAT68475.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.312627262301497 3.49817664992476 0.00750519030651356 1 4.58927089837414 18.7621731781197 0.312627262301497 0.084600064150409
AT1G69220_at 6.29236183246095 6.15293347024289 5.45732943100155 5.67123413102396 6.16895641143022 5.37633033821987 5.7378443615846 5.77703904234012 6.56902719572355 6.23913071600664 6.15805047757597 5.6265702354869 6.14015895411517 6.19836446484367 5.97308576820265 5.92099296253143 5.81857291124399 5.96721641282267 6.6793584055595 0.187388733050555 0.192700673379774 0.192377710120688 0.195008311118951 0.189744179216713 0.211939155163844 0.191201477132004 0.198842184950305 0.205015471905985 0.192326419409335 0.195509821946975 0.192813122765136 0.189277056774380 0.191236605231047 0.195156934738938 0.187388733050555 0.201538595990912 0.191205845352696 0.189836358673387 1 1|0 -|/ 26023969 26024779 26024364.444 26023752 26029834 - gene protein_coding_gene FALSE TRUE AT1G69220.1|AT1G69220.2 SIK1 (ERINE/THREONINE KINASE 1); kinase Encodes a putative serine/threonine kinase (SIK1). similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53165.2); similar to 36I5.3 [Oryza sativa (japonica cultivar-group)] (GB:AAG45491.1); similar to putative serine/threonine kinase [Hordeum vulgare subsp. vulgare] (GB:AAG49001.1); similar to putative serine/threonine kinase [Triticum monococcum] (GB:AAL74185.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53165.2); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G15220.1); similar to putative serine/ threonine kinase [Sorghum bicolor] (GB:AAM47579.1); similar to 36I5.3 [Oryza sativa (japonica cultivar-group)] (GB:AAG45491.1); similar to putative serine/threonine kinase [Hordeum vulgare subsp. vulgare] (GB:AAG49001.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.421022173907666 -3.49756712200379 0.00751210123324007 1 4.58843548905756 12.0648612751794 -0.421022173907666 0.144268627334558
AT1G29940_at 5.28605052055169 5.54932565245141 5.59401710100168 5.29460961669094 5.17337529400301 5.01792755511899 5.5521790911832 5.3120880274307 3.60367651292331 4.66320464021106 3.74749079508536 3.63319870223863 3.87190753660144 3.6676224635704 4.18184223609938 4.1155338060072 4.46849046096696 3.95526079934117 5.01205566469594 0.221552749563495 0.223841016854109 0.220305527562882 0.217930875188116 0.225217032145333 0.217860221926558 0.224045582731173 0.220500489306049 0.228874446129387 0.226879659363099 0.218796322574459 0.216370405690284 0.22245911957204 0.216811452472960 0.217595600741941 0.216370405690284 0.216979941921045 0.217309030301297 0.218482992847542 1 1 - 10479385 10479977 10479651.364 10479105 10486803 - gene protein_coding_gene FALSE TRUE AT1G29940.1 NRPA2 (nuclear RNA polymerase A 2); DNA-directed RNA polymerase Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). similar to NRPC2 (nuclear RNA polymerase C 2), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G45140.1); similar to hypothetical protein SPBP23A10.07 [Schizosaccharomyces pombe 972h-] (GB:NP_595819.1); similar to DNA-directed RNA polymerase, beta subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47823.2); similar to putative DNA-directed RNA polymerase I subunit, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAM92814.1); contains InterPro domain RNA polymerase beta subunit; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 7; (InterPro:IPR007641); contains InterPro domain RNA polymerase Rpb2, domain 2; (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6; (InterPro:IPR007120); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase, beta subunit; (InterPro:IPR007121); contains InterPro domain RNA polymerase I, Rpa2 specific; (InterPro:IPR009674) -0.313036176910938 -3.49720140645477 0.00751625099844342 1 4.5879342205464 9.53818691860341 -0.313036176910938 0.0849143729903874
AT2G47180_at 7.66705727181778 7.70515176377855 7.15291621881814 7.554327743581 7.58190337402951 7.58631537486459 6.88774622065075 7.35812692703182 6.17986325019817 7.39279626885673 7.63828400475016 7.48762217849308 7.7567283804723 7.74854897127553 7.14563015950465 7.60274113460149 7.40307866085568 7.35825490178808 7.07089798379037 0.188357350947336 0.187825502777727 0.199227229588367 0.18847988936609 0.181058380731527 0.186436977477681 0.184553397549798 0.195212792999662 0.208095124501723 0.198404513257786 0.189814350679232 0.181058380731527 0.192069848629196 0.193777341286940 0.190716887448025 0.181058380731527 0.207069766644256 0.193651854482025 0.188107440033117 2 2|0 -|/ 19376155 19376825 19376526.7 19375868 19377511 - gene protein_coding_gene FALSE TRUE AT2G47180.1 ATGOLS1 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 1); transferase, transferring hexosyl groups similar to ATGOLS2 (ARABIDOPSIS THALIANA GALACTINOL SYNTHASE 2), transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G56600.1); similar to galactinol synthase [Brassica napus] (GB:AAD26116.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.350385173344729 3.49461163979384 0.00754570631359865 1 4.58438402648785 14.6360915534462 0.350385173344729 0.107218485414481
AT1G14920_at 7.57389384416183 7.7323153641472 6.1926570843267 6.40744068270525 7.18344673413564 7.32121700391282 6.5237649979296 6.65608626580669 8.04944488919545 6.41141532508648 8.79203393711348 9.0089740111715 8.40566601736331 8.2911106039826 8.89907631349372 8.49202404002495 7.43335448764684 7.69531259332002 7.9952014946186 0.19375449481637 0.195111862180201 0.23191859025036 0.203258478818837 0.214349474202245 0.214175997293824 0.200455855597754 0.201750443659750 0.210618724148692 0.199987118511307 0.195227688015305 0.19375449481637 0.195136590462197 0.196507465948052 0.196836205093696 0.19375449481637 0.20813419161513 0.205089919111278 0.199998900161209 1 1 + 5150489 5150976 5150725.636 5149221 5151349 + gene protein_coding_gene FALSE TRUE AT1G14920.1 GAI (GA INSENSITIVE); transcription factor Similar to a putative transcription factor and transcriptional coactivators. Repressor of GA responses and involved in gibberellic acid mediated signaling. Member of the DELLA proteins that restrain the cell proliferation and expansion that drives plant growth. Identical to DELLA protein GAI (Gibberellic acid-insensitive mutant protein) (Restoration of growth on ammonia protein 2) (GAI) [Arabidopsis Thaliana] (GB:Q9LQT8;GB:O23643;GB:O23724); similar to RGA1 (REPRESSOR OF GA1-3 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G01570.1); similar to DELLA protein RGA1 (RGA-like protein 1) (BrRGA1) (GB:Q5BN23); similar to DELLA protein GAI [Gossypium barbadense] (GB:ABG26370.1); similar to DELLA protein RGA2 (RGA-like protein 2) (BrRGA2) (GB:Q5BN22); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.27325767790324 3.49453240415349 0.0075466094365155 1 4.58427539138158 14.8801266988814 0.27325767790324 0.0567975154166297
AT2G31530_at 5.61579518385961 5.61127627013604 5.49926534430579 5.43196588697342 6.3312976491683 5.77866715034047 6.76892268744269 6.4599662773198 5.64382489001447 5.21082175400264 4.7028526031471 5.14739379406743 5.18544315902045 5.14882929730866 4.77880886258082 4.88238161216583 4.825755677751 5.0975170285912 5.13078203726452 0.263271106628998 0.26119787801617 0.26587429171864 0.271100554175479 0.261562241245830 0.266502926987357 0.265684027013661 0.268420256508553 0.274805406703961 0.271157159457071 0.260666414812942 0.260666414812942 0.273788014072481 0.270851244105957 0.272293131685034 0.260666414812942 0.264847621787387 0.269169520880528 0.272649791717349 2 2|0 +|/ 13436462 13437315 13436829 13434485 13437542 + gene protein_coding_gene FALSE TRUE AT2G31530.1 EMB2289/SCY2 (EMBRYO DEFECTIVE 2289, SECY HOMOLOG 2); protein translocase similar to SCY1 (SECY HOMOLOG 1), protein translocase [Arabidopsis thaliana] (TAIR:AT2G18710.1); similar to Os05g0397700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055468.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07645.1); contains InterPro domain SecY protein; (InterPro:IPR002208) -0.355522284878678 -3.49286925726508 0.00756559222424826 1 4.58199495395417 11.0869440469047 -0.355522284878678 0.110186252651592
AT3G44720_at 5.81928674439334 6.17518327329364 7.81481316072565 7.89693791967455 6.44627175728051 6.16640920890128 5.38145602265578 5.79641335948619 7.04184708104951 5.97446587918993 6.45392453421925 6.49236387378549 5.53235786815678 6.15070331279601 6.17066224055894 5.75409053466578 5.29378878269620 5.84909986234221 6.63361022513849 0.231985066616984 0.219018180222042 0.224905395898033 0.224440711512075 0.21898453786706 0.236050075327914 0.225324512468308 0.219583200671769 0.224874340621316 0.218860223331009 0.220687883586456 0.219751285101303 0.21520255701449 0.216544366894612 0.215953432254506 0.216353548666690 0.232104930971287 0.224838846985742 0.217569241732153 3 3 + 16283463 16283939 16283658.273 16282639 16284331 + gene protein_coding_gene FALSE TRUE AT3G44720.1 prephenate dehydratase family protein similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT5G22630.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) 0.350086321357433 3.49148345391959 0.00758144794994245 1 4.58009450819138 12.6931455664406 0.350086321357433 0.107226805304852
AT3G58170_at 9.4466090060339 9.7219156217203 9.74191026525533 9.9112296644642 10.2380872143985 10.0504701337673 9.73060149802348 9.76347523401673 9.14672834960631 9.30866282939864 9.4598513776167 9.4025666869524 9.5744741663073 9.48905277703544 9.39727386682581 9.66065296841277 9.46343948564446 9.43809821441732 9.26107962319537 0.123282545265090 0.119383230231117 0.125939271885826 0.125242304119689 0.123641508571019 0.131585695159621 0.128570029797445 0.120582963410361 0.136808563281498 0.125442141016114 0.122573882917539 0.126521495341798 0.12052290145028 0.128697067793583 0.129988731974412 0.120586327370216 0.135601000094048 0.125875403149244 0.119096624882969 3 0|3 /|- 21553610 21554437 21554037.111 21553336 21554951 - gene protein_coding_gene FALSE TRUE AT3G58170.1 ATBS14A; protein transporter Encodes a Bet1/Sft1-like SNARE protein which fully suppresses the temperature-sensitive growth defect in sft1-1 yeast cells; however, it cannot support the deletion of the yeast BET1 gene (bet1Δ). Identical to Bet1-like SNARE 1-1 (AtBET11) (Bet1/Sft1-like SNARE 14a) (AtBS14a) (BET11) [Arabidopsis Thaliana] (GB:Q9M2J9); similar to ATBS14B, protein transporter/ v-SNARE [Arabidopsis thaliana] (TAIR:AT4G14455.1); similar to putative Bet1/Sft1-related SNARE [Oryza sativa (japonica cultivar-group)] (GB:BAD22877.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.283313285845418 3.49116034374442 0.00758514986561463 1 4.57965136748044 19.1877872265275 0.283313285845418 0.0649228688019937
AT2G18390_at 7.44508399346003 7.85898339540235 6.42762008958145 6.36157290868035 7.34782163551674 7.0180055441533 6.88464855194753 6.50685650787348 7.22931394329708 7.1987197379622 7.30061578648686 7.22494989714656 6.8214501085674 6.93936513516587 7.05038319622718 6.49715304802651 6.64126962636979 6.6337870561335 7.24606384457714 0.197651686581135 0.203133054970035 0.194955928308994 0.199206131657721 0.195263691516134 0.197858549781236 0.197299524119246 0.202465456301722 0.222812978589253 0.211243020177676 0.197376785612823 0.194955928308994 0.199731485278233 0.205276266957591 0.206071015609507 0.198177219082809 0.204642939194554 0.208416354828149 0.199093665764838 2 0|2 /|+ 7995625 7996430 7996148.667 7995247 7996607 + gene protein_coding_gene FALSE TRUE AT2G18390.1 TTN5 (TITAN 5); GTP binding Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development. Identical to Probable ADP-ribosylation factor At2g18390 [Arabidopsis Thaliana] (GB:Q9ZPX1); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G10630.1); similar to ARF1A1c (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT2G47170.1); similar to ATARFA1B (ADP-ribosylation factor A1B), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT5G14670.1); similar to Os02g0327100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046710.1); similar to ARF-like protein [Dictyostelium discoideum AX4] (GB:XP_640825.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) -0.360607755600612 -3.49089370617913 0.00758820620331115 1 4.57928566731096 14.0379845318490 -0.360607755600612 0.113106869159315
AT1G28140_at 9.7511228710368 9.99340537397855 10.2758146784709 10.3278690877179 10.6606709590945 10.2972196843991 10.2549644397610 9.94953329147478 9.17956876079312 9.37958413788082 9.5860138931208 9.24079586636438 9.80959920908565 9.50090630623288 9.3128567329194 9.44314934533583 9.75892508808394 9.39968120245304 9.21975333990056 0.184953053751878 0.179796142747595 0.183469981828244 0.182139464253171 0.1856375887011 0.179559270147930 0.182387113330642 0.183264047897289 0.215167783744677 0.177789362202280 0.181062464486605 0.176045434775619 0.190603537623427 0.197007050389209 0.185936112899302 0.184197129674819 0.195800011309691 0.207111922287664 0.183108814905762 1 1|0 -|/ 9833076 9833953 9833576.625 9832803 9834414 - gene protein_coding_gene FALSE TRUE AT1G28140.1 similar to Os03g0850600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051907.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55773.1) 0.324996325474579 3.49063083826841 0.00759122060306893 1 4.57892512777122 19.5718882323955 0.324996325474579 0.0926764661617931
AT3G21290_at 4.74366758739189 5.13224651859107 4.73287008810162 5.18991894687739 5.12795302061121 4.9897955051934 5.12782803165889 5.03341031368868 5.48593433524207 4.97487392598437 4.46551938022074 4.92880460559914 4.64918326786951 4.4188553871635 4.44211521704295 4.71379043120255 4.75421622243079 4.7490680708117 5.56785382830572 0.211938203822947 0.202949055532465 0.219009359350455 0.208171215603262 0.204701719698788 0.220234831962013 0.209945086430832 0.214355955760648 0.217619734514821 0.214249198793947 0.213790884360152 0.20633378111993 0.207197425283597 0.213015499489117 0.215114072026998 0.205991843966456 0.214365230692686 0.216084873108034 0.205352143718888 3 3 + 7487394 7488649 7487739.273 7482137 7488941 + gene protein_coding_gene FALSE TRUE AT3G21290.1 dentin sialophosphoprotein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Os03g0187100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049207.1); similar to PREDICTED: similar to Dentin sialophosphoprotein precursor (Dentin matrix protein 3) (DMP-3) [Macaca mulatta] (GB:XP_001098430.1); contains InterPro domain Occludin and RNA polymerase II elongation factor ELL; (InterPro:IPR010844) -0.350923506510752 -3.49001915941453 0.00759823983275704 1 4.57808613584416 10.0012519694993 -0.350923506510752 0.107779779703324
AT1G69850_at 8.47644543053096 8.87853635584214 8.91514842160317 8.6115038945949 9.10017662129454 9.28815348532798 8.0259609614725 8.54891774836191 8.23488581777526 8.20189802139059 8.11742860069325 8.27810662256121 8.86000733177675 8.24438869969727 7.8975754255803 8.68318604216453 8.99592555468268 8.59395603901621 8.07880870347399 0.160213815021493 0.157702324583145 0.159062682854342 0.162133443660626 0.155143764727675 0.157277638171350 0.154484340010541 0.162344892242613 0.176656716399019 0.157066303845823 0.164003833554288 0.155400215283422 0.153296190931686 0.166199224082698 0.168218575114083 0.153296190931686 0.172572770637987 0.153296190931686 0.162567454727491 1 1 - 26300641 26301169 26300868.182 26300339 26304135 - gene protein_coding_gene FALSE TRUE AT1G69850.1 ATNRT1:2 (NITRATE TRANSPORTER 1:2); calcium ion binding / transporter Encodes an inducible component of low-affinity nitrate uptake. mRNA found primarily in root hairs and the epidermis of roots. similar to nitrate transporter, putative [Arabidopsis thaliana] (TAIR:AT1G27040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G62730.1); similar to Os06g0581000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057937.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE79510.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.391619045147423 3.48832862013627 0.0076176749986418 1 4.57576708892583 17.0459483500792 0.391619045147423 0.129813632976318
AT3G12930_at 7.72611216272886 8.13476389911782 6.00220085256426 7.23654266751368 7.8586031007747 7.12334426845632 8.696076738446 8.6159161293158 7.5646655529679 7.83916021849751 6.95743484148968 7.88572721173504 7.54733208057754 7.48276338055543 8.27193281202499 7.6901005492563 7.33601059750883 7.16713402525771 7.50622263564259 0.236019760156824 0.223907689095334 0.268409637186124 0.234903252232761 0.2320226789306 0.243039830157906 0.239389464342204 0.229871558456008 0.255488534047303 0.222202544323288 0.226875893625665 0.222202544323288 0.225425440709893 0.241569257016432 0.232922273372378 0.223956021170100 0.2551592107435 0.23571231027328 0.224563243175793 3 3 + 4128599 4129585 4129070 4128414 4129963 + gene protein_coding_gene FALSE TRUE AT3G12930.1 similar to Os09g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063546.1); similar to Protein Iojap (GB:Q41822); contains InterPro domain Iojap-related protein; (InterPro:IPR004394) -0.666211437571764 -3.48750569245455 0.00762715469902235 1 4.57463807204521 15.2636885971997 -0.666211437571764 0.258867290056823
AT1G15340_at 8.56918680920217 8.89936181030698 8.66502199765534 8.72259090917156 9.3001055593103 9.14530499828691 9.41147868480856 9.45749019764994 9.09955214213506 9.2635503231015 8.73416386233634 8.77847218706885 9.03143364795209 8.93003391773043 8.1646981202828 9.19618957354005 8.8739876873524 8.78275210216617 9.38664385358704 0.123877036117240 0.131434351108732 0.124071750966469 0.131306676133214 0.119715119956739 0.138835512189807 0.121122067304973 0.122602167773312 0.130240442806861 0.126363810788214 0.120161359321804 0.123651595594530 0.12971391555837 0.123545525084627 0.122561801692877 0.123094878739400 0.131561941480549 0.128789793322765 0.126525974316099 1 1 - 5275890 5276377 5276151.273 5275672 5277684 - gene protein_coding_gene FALSE TRUE AT1G15340.1 MBD10 (methyl-CpG-binding domain 10); DNA binding Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. similar to MBD11 (methyl-CpG-binding domain 11), DNA binding [Arabidopsis thaliana] (TAIR:AT3G15790.1); similar to putative methyl-binding domain protein [Cryptomeria japonica] (GB:BAE92286.1); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739) -0.282286280845055 -3.48732847409724 0.007629197790632 1 4.57439492491951 18.0520085342547 -0.282286280845055 0.0643823785263876
AT4G19500_at 7.75834776162142 8.02313152271649 7.60855588145952 7.7130708721368 8.39471454879757 7.59630922942555 8.29324200771188 8.33225023792102 7.78445214255044 8.12406680887147 7.74011509580293 7.73890971154906 7.90175969372133 7.43988376654982 7.33080004436384 8.55482579185319 7.10238569641778 7.03064103086541 8.6343905299526 0.211275388089937 0.205890031688119 0.219395757109417 0.220640724396668 0.212170071471518 0.22611406617152 0.215615095640503 0.208150515714931 0.221979230794642 0.207278625053918 0.209499893471333 0.205890031688119 0.210412739999563 0.218154762581516 0.213801908394592 0.208399525453971 0.231301378225035 0.215678859854950 0.205890031688119 4 4 + 10629472 10630107 10629829.091 10625798 10630150 + gene protein_coding_gene FALSE TRUE AT4G19500.1 disease resistance protein (TIR-NBS-LRR class), putative similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.2); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.42481748638613 -3.48643069428260 0.00763955686984015 1 4.57316308705235 15.8578952232314 -0.42481748638613 0.146842416364249
AT1G55920_at 9.96812451349877 10.1118618578216 10.7068730710194 10.8671193006898 10.7689824687552 10.9172039733769 10.6745377929804 11.1145011982736 10.0534244687926 10.6835882644483 10.7271946902051 10.5065131968363 10.961830526883 10.7246771141638 10.1584486012745 11.0317077987190 11.0350516739296 10.8499870589921 10.6474553874549 0.0764908667855513 0.0754616804227892 0.0749722622518568 0.0770030336376642 0.0736569926073717 0.0807804406171206 0.0733840912206826 0.0767081180206874 0.0868711558393916 0.0741375439040756 0.0751552328507052 0.0730666673103273 0.074079900703132 0.0849614457323832 0.0802927792878784 0.0728487140626591 0.082477651083138 0.0789988972302081 0.074844861478298 1 1 + 20916448 20916924 20916628.727 20915781 20917112 + gene protein_coding_gene FALSE TRUE AT1G55920.1 AtSerat2;1 (SERINE ACETYLTRANSFERASE 1) Encodes a chloroplast/cytosol localized serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Identical to Serine acetyltransferase 1 (EC 2.3.1.30) (AtSAT-1) (SAT-p) (AtSERAT2;1) (SAT1) [Arabidopsis Thaliana] (GB:Q42588;GB:Q43297); similar to AtSerat2,2 (SERINE ACETYLTRANSFERASE 1), serine O-acetyltransferase [Arabidopsis thaliana] (TAIR:AT3G13110.1); similar to serine acetyltransferase (GB:AAC37474.1); contains InterPro domain Serine acetyltransferase, N-terminal; (InterPro:IPR010493); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Serine O-acetyltransferase; (InterPro:IPR005881); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) 0.31786266093845 3.48622374698661 0.00764194684554617 1 4.57287912037103 21.2466083751473 0.31786266093845 0.0885588014271282
AT2G18730_at 7.37839872998686 7.36512271560164 7.04333297485629 7.41569114682749 7.53317913560401 6.89520831785705 6.95159949264336 6.70828877336497 6.80047924930289 5.94514303816896 7.11825282800001 6.7851013279752 6.99706762428646 7.25802059036151 6.96841047897897 7.18988347375142 6.62847294895768 6.6158687119988 6.0501822897514 0.200204136270984 0.19799414395589 0.201916057981357 0.196324716846288 0.192858952333533 0.212733060803436 0.196500596683603 0.202700521346305 0.200687729748838 0.193320273268257 0.198560360964081 0.196166381509660 0.198360629973914 0.205257778508967 0.197899945564397 0.204634369775894 0.202909754641187 0.201566216735729 0.203246505808754 2 2|0 +|/ 8127737 8128731 8128286.6 8125912 8129007 + gene protein_coding_gene FALSE TRUE AT2G18730.1 diacylglycerol kinase, putative similar to ATDGK7 (DIACYLGLYCEROL KINASE 7), diacylglycerol kinase [Arabidopsis thaliana] (TAIR:AT4G30340.1); similar to diacylglycerol kinase [Arabidopsis thaliana] (TAIR:AT5G57690.1); similar to Diacylglycerol kinase accessory re (GB:ABE81286.1); contains InterPro domain Diacylglycerol kinase accessory region; (InterPro:IPR000756); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) 0.400433510759004 3.48435329726176 0.00766358395016845 1 4.57031228148879 13.7665541310660 0.400433510759004 0.134608691259612
AT2G26210_at 8.21767614625578 8.0677602430807 8.30176515228565 8.25475449511505 8.45294983593345 8.4656904084328 7.90129399172711 7.81629615602152 7.3749581971997 7.37970372891752 7.48446363764994 7.3270044201783 7.49731804574021 7.66956187850308 7.52434846421792 7.46378592144216 7.62425258429904 7.64624526088181 7.45512851149305 0.183562334997538 0.172051123305882 0.175244283395639 0.177156838694814 0.187984222887033 0.190456810451313 0.176739470801960 0.187458568852855 0.180777074979045 0.178771300591085 0.172051123305882 0.184794375550298 0.177658799510891 0.172051123305882 0.179053147085624 0.172051123305882 0.181057363084848 0.178537504904573 0.184775067796215 2 2|0 +|/ 11164828 11165414 11165049.75 11164196 11166370 + gene protein_coding_gene FALSE TRUE AT2G26210.1|AT2G26210.2 ankyrin repeat family protein similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18950.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79870.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.247196193040546 3.4834732604658 0.0076737864385202 1 4.56910443189913 15.6512163065152 0.247196193040546 0.0309916379434533
AT4G22150_at 8.04637734593486 8.39639644379329 8.74686829674614 8.5107511435678 8.88974369434482 8.64193639891624 8.31078611601769 8.1956337457436 8.3200180821264 8.33262720716225 8.64153355694515 8.60535916490273 8.374562586336 8.59637318839431 8.36243293693395 8.27172046498606 8.36269777853384 8.46410885603562 8.21655125507495 0.128430195825487 0.123864707290305 0.123966476008763 0.125135474770625 0.123825270112663 0.133465302975472 0.132808064160756 0.125769355395788 0.134384543766439 0.133068973134953 0.130325560213194 0.121024256289220 0.136389685438322 0.130877046463737 0.128418957308647 0.128101843882408 0.134605587532338 0.130417108153291 0.121024256289220 4 4 - 11731295 11732023 11731503.273 11731150 11732691 - gene protein_coding_gene FALSE TRUE AT4G22150.1 PUX3 (LANT UBX DOMAIN-CONTAINING PROTEIN 3) Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX3) similar to PUX4 (LANT UBX DOMAIN-CONTAINING PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT4G04210.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain SEP; (InterPro:IPR012989) 0.315071427850155 3.48242992894782 0.00768590060636191 1 4.56767232351177 16.8421020221770 0.315071427850155 0.0870334561178719
AT2G26970_at 7.47730257098856 7.69666437962948 8.00588600338073 7.66106207050363 7.8212745733669 7.82634122143457 7.26150051126224 7.30202397387573 7.36063434650136 6.76052595629311 5.96174862260755 5.90617794827443 6.14715533265181 6.22796779962309 5.74761929738452 6.37382715184786 5.64395087421084 6.51444010791903 7.00174395606822 0.227419035723720 0.2174848517841 0.230052778190778 0.219719866484283 0.223140620762783 0.220749664267512 0.225969358740913 0.219927872610153 0.239417287029452 0.219347081456781 0.219253715153897 0.219679728298453 0.221870209955356 0.222421400985053 0.228038708209531 0.221625043142921 0.228565670891694 0.224245190724242 0.217507109750800 2 0|2 /|- 11517202 11517699 11517367.75 11516799 11518992 - gene protein_coding_gene FALSE TRUE AT2G26970.1|AT2G26970.2 exonuclease family protein|exonuclease Identical to Oligoribonuclease (EC 3.1.-.-) [Arabidopsis Thaliana] (GB:Q9ZVE0;GB:Q8VZL2); similar to small fragment nuclease [Danio rerio] (GB:NP_957038.1); similar to PREDICTED: similar to Oligoribonuclease, mitochondrial precursor (Small fragment nuclease) (RNA exonuclease 2 homolog) [Tribolium castaneum] (GB:XP_971552.1); similar to OSJNBa0079M09.9 [Oryza sativa (japonica cultivar-group)] (GB:CAD40497.2); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520)|Identical to Oligoribonuclease (EC 3.1.-.-) [Arabidopsis Thaliana] (GB:Q9ZVE0;GB:Q8VZL2); similar to small fragment nuclease [Danio rerio] (GB:NP_957038.1); similar to PREDICTED: similar to Oligoribonuclease, mitochondrial precursor (Small fragment nuclease) (RNA exonuclease 2 homolog) [Tribolium castaneum] (GB:XP_971552.1); similar to OSJNBa0079M09.9 [Oryza sativa (japonica cultivar-group)] (GB:CAD40497.2); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) -0.290669543120107 -3.47809955447077 0.00773639676955285 1 4.56172673455446 14.1846714021065 -0.290669543120107 0.0710770223320437
AT3G22420_at 8.68112978074912 8.58644863661126 8.76455923585458 8.71215367947134 9.02055120921416 8.64983666526029 9.20793457400426 9.15554357609465 9.44045760664433 9.35835411151575 8.97390437551277 8.95695386126471 8.87998472934515 9.19607206684434 8.5401552359539 9.46813204501452 8.83141737080317 8.49913167266192 9.30669730941472 0.106475877795099 0.103184990344920 0.108654779277579 0.100272821160310 0.101581139762882 0.105131957215616 0.112373324245170 0.106347938229481 0.101649940711008 0.101459532287225 0.105164053306979 0.100426676352296 0.107901418814735 0.107350900383288 0.109520219689795 0.107217384121002 0.112059968561995 0.107048934471361 0.101769538216957 3 3 + 7948367 7948935 7948662.273 7946533 7949103 + gene protein_coding_gene FALSE TRUE AT3G22420.1|AT3G22420.2 WNK2 (WITH NO K 2); kinase Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms. similar to WNK1 (WITH NO LYSINE (K) 1), kinase [Arabidopsis thaliana] (TAIR:AT3G04910.1); similar to mitogen activated protein kinase kinase [Oryza sativa] (GB:AAC32599.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.285636516965633 -3.47807855299686 0.00773664251688517 1 4.56169789338345 17.9906306340908 -0.285636516965633 0.0674435902079667
AT2G38700_at 8.01367562183583 7.70581961475747 6.97947058558144 6.89232152069852 7.61874451334357 7.49213876405578 7.95323324712397 7.90040542575886 7.97162574358117 7.83436242410582 7.87489900491495 8.28868445844953 7.79809332890805 8.06714209060233 8.38255961944919 7.61509312670216 7.36162021058573 8.16788802258651 7.74134969420833 0.147545747485557 0.140522316713719 0.155427890084577 0.164515755371648 0.143980985461157 0.151182607104951 0.139022510739874 0.139167370870841 0.145784795681984 0.145148760729233 0.142236349546203 0.142246299399369 0.144966432915773 0.138032106848165 0.144343261018980 0.145759307995130 0.163075118845538 0.149866747925538 0.144242282846983 2 2|0 -|/ 16188041 16189017 16188416.375 16187774 16191024 - gene protein_coding_gene FALSE TRUE AT2G38700.1 MVD1 (mevalonate diphosphate decarboxylase 1) Encodes mevalonate diphosphate decarboxylase, the enzyme that catalyzes the synthesis of isopentenyl diphosphate, used in sterol and isoprenoid biosynthesis. The protein appears to form a homodimeric complex. Incidentally, it was shown that the Arabidopsis MVD protein could also interact with its yeast homolog to form a heterodimer. similar to mevalonate diphosphate decarboxylase, putative [Arabidopsis thaliana] (TAIR:AT3G54250.1); similar to mevalonate disphosphate decarboxylase [Arnebia euchroma] (GB:ABG24207.2); similar to mevalonate disphosphate decarboxylase [Hevea brasiliensis] (GB:AAL18927.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain GHMP kinase; (InterPro:IPR006204); contains InterPro domain Diphosphomevalonate decarboxylase; (InterPro:IPR005935) -0.276114884653085 -3.47687019689532 0.00775079588612806 1 4.56003836575973 15.4662812133477 -0.276114884653085 0.060244421060682
AT3G17590_at 5.67822128164137 5.98525979526824 4.77652367260895 4.49209454944431 5.89475257495081 5.48447150843239 4.43342340915989 4.46754876947026 5.01003279503398 4.46978495152927 3.90694845518168 4.0944097843179 3.64044460407062 3.91162235141637 3.97300320582016 3.87527519193389 3.55813676909677 4.11696421373203 4.26918040792986 0.249768428520484 0.239380349249747 0.250977082556074 0.242720482210396 0.245861508560126 0.251812662523032 0.241220939057126 0.245476475947159 0.256172818402205 0.239380349249747 0.243301082982897 0.250857643945725 0.239380349249747 0.256538815544136 0.241961487759411 0.241152620632953 0.245045048107209 0.241248738293582 0.239380349249747 3 0|3 /|- 6017936 6019176 6018730.8 6017216 6019671 - gene protein_coding_gene FALSE TRUE AT3G17590.1 BSH (bushy growth) Encodes the Arabidopsis homologue of yeast SNF5 and represents a conserved subunit of plant SWI/SNF complexes. Identical to Chromatin structure remodeling complex protein BSH (Protein bushy) (SNF5 homolog) (BSH) [Arabidopsis Thaliana] (GB:P93045;GB:Q9LUN8); similar to putative SNF5 homolog BSH (bsh) [Oryza sativa (japonica cultivar-group)] (GB:BAD13031.1); similar to Os02g0723700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047974.1); contains InterPro domain SNF5/SMARCB1/INI1; (InterPro:IPR006939) -0.338775775205343 -3.47686690830831 0.00775083444229345 1 4.56003384902145 9.38533692351063 -0.338775775205343 0.101597630978027
AT1G33250_at 6.82332603456164 7.3119766310199 6.6681995415559 6.90370330792729 7.73984657608523 7.39566136850548 7.55141335570541 7.36157067637656 7.88965079254826 6.90729302034988 7.28094635061285 6.62816120540867 6.83583529795377 6.7663366626953 6.40177379346526 6.7279238898056 6.61946164940894 6.79653995283411 7.40440824108932 0.218106859660477 0.205104516230151 0.217659318819199 0.216044102416388 0.209008216767060 0.215460757104361 0.212197181727619 0.20988839772092 0.213453270992418 0.211221613344751 0.213230118621829 0.205495563915606 0.218854712673794 0.209771239645802 0.211528945936413 0.209823029491375 0.209676757427895 0.212689593594686 0.217001466902894 1 1 - 12057504 12058168 12057833.545 12057230 12059465 - gene protein_coding_gene FALSE TRUE AT1G33250.1 fringe-related protein similar to fringe-related protein [Arabidopsis thaliana] (TAIR:AT4G23490.1); similar to fringe protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47887.1); contains InterPro domain Protein of unknown function DUF604; (InterPro:IPR006740); contains InterPro domain Fringe-like; (InterPro:IPR003378) -0.364273655143413 -3.47663490824000 0.00775355497599474 1 4.55971520281158 14.2982487039349 -0.364273655143413 0.115926622222902
AT3G05670_at 6.15252367976376 6.68595062819608 5.7345232454742 6.03100253239016 6.66708718907764 6.4979059959993 6.69890820796044 6.42256473560669 6.52883589398069 6.93347030568138 6.60293252718682 6.34555987743241 6.24014018733562 6.42491617830619 5.73260321892482 6.68799495518837 6.62231076088288 6.51803672074813 7.18130258762148 0.247906036389797 0.247674326082808 0.250099114132279 0.246557208507027 0.242303101233333 0.250595037198246 0.249530697632582 0.254376597723528 0.263440044930991 0.242303101233333 0.242303101233333 0.242303101233333 0.249665521026688 0.242878215810696 0.245964699324626 0.247508087439966 0.250042511267237 0.249880955890181 0.242303101233333 3 3|0 +|/ 1656332 1657003 1656656.6 1653270 1657165 + gene protein_coding_gene FALSE TRUE AT3G05670.1 PHD finger family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G50690.1); similar to Os03g0302200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049869.1); similar to hypothetical protein DDBDRAFT_0188541 [Dictyostelium discoideum AX4] (GB:XP_636078.1); similar to Os07g0690300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060711.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.370874098995140 -3.47546037830510 0.00776734348607152 1 4.55810190351673 13.0003156429811 -0.370874098995140 0.119574670255438
AT4G04040_at 10.0122732623130 9.91861221500278 9.77620094662342 9.58916272540651 9.9724593712404 9.69933917002063 9.94637463768467 9.89133297622133 9.90145781162873 9.98144500797847 9.60141043428297 9.78051192330669 9.74245724376714 9.55051230975266 9.4757603605121 9.4624875703518 9.5013998049699 9.41165298148803 9.92148206843603 0.109021446234188 0.106465061159977 0.113825666193843 0.113101330537066 0.107936359548345 0.110006162549417 0.108656148313785 0.111343325155992 0.117819025300149 0.111344820533785 0.111524982133672 0.106647921859786 0.109618287078614 0.115730216325253 0.114133594854092 0.109656181322426 0.114786697547107 0.112705377043546 0.110352528837290 4 0|4 /|+ 1942055 1942734 1942266.778 1939248 1942952 + gene protein_coding_gene FALSE TRUE AT4G04040.1 MEE51 (maternal effect embryo arrest 51); diphosphate-fructose-6-phosphate 1-phosphotransferase similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Arabidopsis thaliana] (TAIR:AT1G12000.1); similar to pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi] (GB:AAC67586.1); similar to Pyrophosphate-dependent phosphofructokinase PfpB [Medicago truncatula] (GB:ABD32662.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41141); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) -0.275939301804932 -3.47391361791368 0.00778554129017071 1 4.55597703383593 19.6010039336816 -0.275939301804932 0.0602915884103241
AT2G30270_at 4.74168251633629 5.45102485218523 5.44469836581973 5.3854385695413 5.3164775700739 4.87974107172118 4.87142774730499 5.77500065273211 3.84720310719566 3.85343338736808 5.21546370374249 5.09489894051828 4.7917301137041 4.5320042795566 5.19809202075718 5.39664069987544 4.35507830863667 4.51663529335562 3.73159506907111 0.308586461570848 0.285212009285031 0.296491455051024 0.295075302634054 0.289667573702115 0.289475932552599 0.290120610334863 0.293113044038302 0.299949990759215 0.285458253765066 0.300161046871533 0.282757299646775 0.300313411323314 0.288947547894840 0.304928596608797 0.288789191394456 0.293850477224608 0.282757299646775 0.287314072700094 2 2|0 -|/ 12915556 12916064 12915892.143 12914918 12916338 - gene protein_coding_gene FALSE TRUE AT2G30270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01750.2); similar to Protein of unknown function DUF567 [Medicago truncatula] (GB:ABE88873.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.56181450881136 3.47294133717079 0.00779700328487155 1 4.55464119227176 9.58234230549596 0.56181450881136 0.212924832252871
AT3G29375_at 6.48714892775983 5.87125081007452 5.23521043590088 5.20125861907444 6.06097311783172 5.57322502017704 6.6322203827338 6.41283146319143 4.60095400857201 5.63379896347097 4.79939482141706 5.90510563438146 5.3304014295325 5.09037122032952 5.74532675295414 5.45101175327212 4.59174550877674 5.19746695856294 5.5297052857491 0.210113604115523 0.203650728467561 0.200299781935813 0.205946852010381 0.200234804287226 0.213050890496918 0.196985532839165 0.204693247995286 0.199495532285824 0.201596985407444 0.203769651236001 0.202160453795923 0.202003769972341 0.205746384580066 0.199608948112545 0.203478879473398 0.206350187140672 0.201787609330108 0.196985532839165 3 3 + 11282380 11282995 11282702.182 11281388 11283196 + gene protein_coding_gene FALSE TRUE AT3G29375.1 XH domain-containing protein similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G80790.1); similar to Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger; Prefoldin [Medicago truncatula] (GB:ABE87525.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379) -0.412081253527295 -3.47229609255513 0.0078046197464459 1 4.5537546033297 11.1936010616766 -0.412081253527295 0.141282247454685
AT4G13850_at 9.9259231237971 9.72222098440781 10.0853872220103 9.67572829412696 9.89143120910425 9.42444903807577 9.21564613952569 8.82530800183866 8.48943381845005 8.48151567037378 8.60952924263592 8.9399032437388 9.16582621784345 8.93255318686768 9.05177698173213 8.7458341949054 9.10787638682916 8.40309340269853 8.31757782336167 0.139019821495758 0.136174544478924 0.13349689165327 0.134175728487834 0.135707461373134 0.137953622553642 0.132759217928006 0.137261916161719 0.148318862089182 0.142458289678416 0.134824712639472 0.136980473790672 0.136660886984603 0.139807758345014 0.144639776116885 0.134098029918059 0.146764284216591 0.139825738884880 0.142168497232907 4 4|0 +|/ 8021366 8021919 8021633 8020947 8022256 + gene protein_coding_gene FALSE TRUE AT4G13850.1|AT4G13850.2|AT4G13850.3|AT4G13850.4 ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding / double-stranded DNA binding / single-stranded DNA binding|ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2); RNA binding|ATGRP2 (GLYCINE-RICH RNA-BINDING PROTEIN 2) Encodes a glycine-rich RNA-binding protein. Gene expression is induced by cold. Identical to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (GRP2) [Arabidopsis Thaliana] (GB:Q9SVM8;GB:Q39105;GB:Q41988); similar to GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G23830.2); similar to glycine-rich RNA-binding protein PsGRBP [Pisum sativum] (GB:AAB71417.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (GRP2) [Arabidopsis Thaliana] (GB:Q9SVM8;GB:Q39105;GB:Q41988); similar to GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G23830.2); similar to glycine-rich RNA-binding protein PsGRBP [Pisum sativum] (GB:AAB71417.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Glycine-rich RNA-binding protein 2, mitochondrial precursor (AtGRP2) (GRP2) [Arabidopsis Thaliana] (GB:Q9SVM8;GB:Q39105;GB:Q41988); similar to GR-RBP4/GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G23830.2); similar to RNA binding protein-like protein [Solanum tuberosum] (GB:ABA40453.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.393507190765771 3.47180533932449 0.00781041784498282 1 4.55308025325171 18.2452908572199 0.393507190765771 0.131766235743018
AT2G27820_at 6.29357217566706 7.12359952248245 5.14847876742774 5.43177161163387 5.74019241469765 5.78915372765044 6.8387475298193 7.21555767936172 6.36878868767863 5.89440176170832 6.90073929349568 6.87998804506584 6.12094226992742 6.56458748680815 6.95955223846547 6.5276229718022 5.42501388224166 6.44125059838464 5.91150663859105 0.216069264737180 0.209120266549183 0.212063815504238 0.217401145268151 0.206819665776875 0.219277763828776 0.214077383553058 0.202690186110416 0.209200787990058 0.203955797977197 0.205668731568044 0.207829196836604 0.207884303658055 0.212305396833088 0.201777102117751 0.200330209255300 0.218829066211814 0.210922882764694 0.209724855266788 2 2 + 11864586 11865131 11864817.273 11863845 11865365 + gene protein_coding_gene FALSE TRUE AT2G27820.1 PD1 (PREPHENATE DEHYDRATASE 1); prephenate dehydratase similar to prephenate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT1G08250.1); similar to prephenate dehydratase [Ipomoea trifida] (GB:AAS79603.1); contains InterPro domain Prephenate dehydratase; (InterPro:IPR001086) -0.46062018043283 -3.47126996122368 0.00781674835270368 1 4.55234454638528 12.4654814090591 -0.46062018043283 0.165408335536528
AT4G39960_at 8.35697442340193 8.25350788019662 8.14918283630262 7.7080220500655 8.32062567224483 7.5548835013829 8.91410037411772 8.62282904489983 7.57556936812565 7.7319748017187 6.94654946534877 7.72744002619023 7.25273426684792 7.21640030475842 7.41170877903758 7.42783405366201 7.37962657449517 6.73733890721949 7.39039509652994 0.219461140250514 0.228970180246522 0.234158787781971 0.233659563454469 0.222166851649011 0.231238393651665 0.229559414925264 0.228131643844447 0.231877268351494 0.225477297841897 0.221384390158492 0.219272542636591 0.222576288014982 0.235010296790850 0.222603849347726 0.222760828615423 0.235208443108874 0.238368801138392 0.224443732533984 4 4 + 18535738 18536254 18535929.455 18533749 18536612 + gene protein_coding_gene FALSE TRUE AT4G39960.1 DNAJ heat shock family protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G22360.1); similar to Os05g0333500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055227.1); similar to DNAJ homologue [Oryza sativa] (GB:BAB70509.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ; (InterPro:IPR012724); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.453600061959105 -3.47084977413655 0.00782172058843415 1 4.55176710573704 15.6492326241530 -0.453600061959105 0.162019116830154
AT2G47970_at 8.09833674206484 8.06059684998223 7.875576632078 7.83367668369447 7.91619123265139 7.98841135865299 7.31801705186643 7.81094907212755 7.50778039014153 6.738686983277 7.55701899809293 7.52141622416777 7.45251714544147 7.75132900894056 7.5800350534033 7.77570554412792 7.59815434013435 7.47275182951111 6.88242066628369 0.130317627222356 0.131000543624829 0.138869410999353 0.131871431345268 0.131754352160629 0.137019214540182 0.138216823336452 0.134508787599688 0.132863248558280 0.148228892393877 0.132962019615458 0.128009348869194 0.128292892340657 0.131015713282252 0.133904967293477 0.127841873857199 0.131561457502763 0.133734346320113 0.146670841353892 2 2 + 19637242 19638008 19637558.818 19636544 19638252 + gene protein_coding_gene FALSE TRUE AT2G47970.1|AT2G47970.2 NPL4 family protein Identical to NPL4-like protein 2 [Arabidopsis Thaliana] (GB:O82264;GB:Q3E6N3); similar to NPL4 family protein [Arabidopsis thaliana] (TAIR:AT3G63000.1); similar to Os01g0377700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043084.1); similar to Nuclear pore complex, rNpl4 component (sc Npl4) (ISS) [Ostreococcus tauri] (GB:CAL51738.1); contains InterPro domain NPL4; (InterPro:IPR007717)|similar to NPL4 family protein [Arabidopsis thaliana] (TAIR:AT3G63000.1); similar to Os01g0377700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043084.1); similar to Nuclear pore complex, rNpl4 component (sc Npl4) (ISS) [Ostreococcus tauri] (GB:CAL51738.1); contains InterPro domain NPL4; (InterPro:IPR007717) 0.313571192917820 3.4705544719712 0.00782521700794813 1 4.55136127346034 15.1785088018288 0.313571192917820 0.0867654093807653
AT1G78995_at 8.45176020567528 8.3924334651799 8.22663615585682 8.0362636925748 8.7224590058977 8.5815295230651 8.2808803334495 8.09428753327741 7.59101033883454 7.52445344124069 7.95434312170814 7.98222726423627 7.67289042065847 7.97149400427456 8.07384651203418 7.56898257148225 7.92725711149403 7.81279002649495 7.1543022311477 0.172433028290638 0.170896418258715 0.168754413569942 0.168689145034831 0.176791880509866 0.17202153113316 0.165676073916882 0.177451891382711 0.166978344833569 0.173268244758954 0.163935711268511 0.163215946869831 0.163218052570931 0.17154458769536 0.164476598441887 0.162094160269702 0.183449106015730 0.167793778915525 0.170866853440412 1 1 - 29720326 29720947 29720763.364 29719972 29721004 - gene protein_coding_gene FALSE TRUE AT1G78995.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10530.1) 0.267052625963316 3.46933273191607 0.0078397001042137 1 4.54968211688231 15.9951483474331 0.267052625963316 0.0531813986143956
AT3G45140_at 12.6334693568159 12.5431606165845 11.8161490043585 11.8173587947837 11.5833382115349 11.4344958725573 12.1101873950336 12.0608477553031 11.1309550345564 11.7830504035847 11.4398919522385 11.3003613192032 11.6995677862810 11.4642801786315 11.3142416818528 12.1628417114207 11.4464984705155 11.4470964507886 11.1453541809205 0.0880296444020754 0.0859933060059826 0.0848972725807865 0.0871203319896263 0.0843770675940484 0.0864702263909915 0.0871634029487255 0.0852876540206301 0.0952941860192321 0.0868815307020708 0.0874231745166585 0.0875342275846102 0.0859846136471775 0.0902852271702283 0.0867127483766956 0.0846722281169058 0.088084193688618 0.084326708451995 0.0842575767431293 3 3 + 16539648 16540189 16539906.909 16536395 16540337 + gene protein_coding_gene FALSE TRUE AT3G45140.1 LOX2 (LIPOXYGENASE 2) Chloroplast lipoxygenase required for wound-induced jasmonic acid accumulation in Arabidopsis.Mutants are resistant to Staphylococcus aureus and accumulate salicylic acid upon infection. Identical to Lipoxygenase, chloroplast precursor (EC 1.13.11.12) (LOX2) [Arabidopsis Thaliana] (GB:P38418;GB:Q8W4E4;GB:Q9M1U5); similar to lipoxygenase family protein [Arabidopsis thaliana] (TAIR:AT1G67560.1); similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to lipoxygenase 2 [Brassica napus] (GB:AAO03559.1); similar to lipoxygenase LOX1 [Populus deltoides] (GB:AAZ57444.1); similar to lipoxygenase [Nicotiana attenuata] (GB:AAP83137.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.246426619639869 -3.4693195216906 0.00783985685895009 1 4.54966395967714 23.4436095343149 -0.246426619639869 0.0313155188945241
AT4G01800_at 9.97733099984331 9.9629079409957 9.93411403158702 9.68865902882745 10.0238848035928 9.63962279116175 10.5948509845637 10.2643358931652 10.3788050539487 10.4014061328254 10.1306025975926 10.2465452901854 9.88417093928943 9.98996444550692 10.3189685961911 10.2943963449648 9.9794266928629 10.1310291778230 10.4367665511682 0.0690924725333636 0.066128652394648 0.0694151817804107 0.067770910834726 0.0684671111943147 0.0672998261864402 0.0671567630910392 0.0690473246914556 0.076940959442438 0.0691758105680492 0.0678130062684676 0.0662737427798054 0.0691440303668802 0.0666354506239612 0.071267627047052 0.0652479159315634 0.0683673035285634 0.0678619889850641 0.0669014894019286 4 4|0 -|/ 770930 771724 771373.8 770722 776131 - gene protein_coding_gene FALSE TRUE AT4G01800.1 preprotein translocase secA subunit, putative Identical to Preprotein translocase secA subunit, chloroplast precursor (SECA) [Arabidopsis Thaliana] (GB:Q9SYI0); similar to preprotein translocase secA family protein [Arabidopsis thaliana] (TAIR:AT1G21650.1); similar to preprotein translocase secA precursor - spinach (GB:A57386); similar to Preprotein translocase secA subunit, chloroplast precursor (GB:Q36795); similar to Preprotein translocase secA subunit, chloroplast precursor (GB:Q41062); contains InterPro domain SecA Wing and Scaffold; (InterPro:IPR011116); contains InterPro domain SecA preprotein cross-linking region; (InterPro:IPR011130); contains InterPro domain SecA protein; (InterPro:IPR000185); contains InterPro domain SecA DEAD-like; (InterPro:IPR011115) -0.331028763139232 -3.46928023063464 0.00784032311269684 1 4.54960995472404 20.2744869374835 -0.331028763139232 0.0974888826825298
AT2G24020_at 8.47209455396076 8.39068199744427 7.54331140867385 7.43637274458225 8.07303430294774 8.00116442300518 8.6713620658147 8.64784132105184 8.36148522510357 8.76929213173883 9.18041145150061 9.51202648706344 8.52226051379655 8.6937384340742 9.49573229681877 9.10880153612041 7.86447304403382 8.67478314750593 8.62730133086335 0.154952794306747 0.146953787197971 0.166726712202601 0.160091563865884 0.152728511989721 0.150012964463809 0.158058860514408 0.147371963106547 0.165279854520229 0.159988764457411 0.146953787197971 0.150760191010956 0.153310222773332 0.170651495441556 0.159856773399567 0.146953787197971 0.166684762003442 0.150925070818994 0.161620382607731 2 2|0 -|/ 10224954 10226319 10225447 10224781 10226428 - gene protein_coding_gene FALSE TRUE AT2G24020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30620.1); similar to Conserved hypothetical protein 103 [Medicago truncatula] (GB:ABE78786.1); similar to Os02g0180200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046090.1); contains InterPro domain Conserved hypothetical protein 103; (InterPro:IPR004401) -0.243261065068333 -3.46898266617986 0.00784385515919473 1 4.54920095017422 16.8882601487348 -0.243261065068333 0.0266876929200749
AT3G58610_at 10.9092972234876 10.8322994546769 10.5257866483597 10.4299807612317 10.5557260265504 10.5937071226994 11.1346437706233 11.0974193348554 10.8233564821468 11.0280788478741 10.8388409275431 11.1991752547458 10.8526650045955 10.7606465958501 11.2503115712734 10.9405025078688 10.7053501397383 10.9928792247139 11.0212295181250 0.0841948791982908 0.0779660854055918 0.0806494718341056 0.0805324195910054 0.0781513963034917 0.0806282041153968 0.0826517061334889 0.0799730425384967 0.0903354102473977 0.0784225001194164 0.0802580380487652 0.0810617056012058 0.0779660854055918 0.082114353495071 0.0808223473403523 0.0779660854055918 0.0809825153622826 0.079854416789593 0.0801044954346833 3 3 + 21684624 21685584 21685173.273 21682410 21685818 + gene protein_coding_gene FALSE TRUE AT3G58610.1|AT3G58610.2 ketol-acid reductoisomerase Identical to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) [Arabidopsis Thaliana] (GB:Q05758;GB:Q42559); similar to Ketol-acid reductoisomerase, chloroplast precursor (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase) (GB:O82043); similar to acetohydroxy acid isomeroreductase [Pisum sativum] (GB:CAB61890.1); similar to Acetohydroxy acid isomeroreductase [Medicago truncatula] (GB:ABE82897.1); contains InterPro domain Acetohydroxy acid isomeroreductase, catalytic; (InterPro:IPR013116); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Acetohydroxy acid isomeroreductase C-terminal; (InterPro:IPR000506); contains InterPro domain Acetohydroxy acid isomeroreductase; (InterPro:IPR013023) -0.241061676145643 -3.46714117062393 0.00786575078753874 1 4.54666953472925 21.7099082191471 -0.241061676145643 0.0231761785574862
AT1G03020_at 3.71975435903022 3.9410753109461 6.1621430183749 6.83583542793803 5.97474893399937 6.5180834533823 7.61578938256071 8.31762208258027 5.33942678064471 4.81304946241809 5.17255081566907 3.8975190775225 6.47651170928857 6.08550407102011 3.74078498541904 6.16298499367174 7.8546748089527 4.5857063444105 4.60809921188799 0.220989062230123 0.216431114410418 0.219811328151953 0.220844464522357 0.224674086981688 0.215937253491252 0.226968504838966 0.228878914363678 0.226609952956876 0.220223978815619 0.220474479842113 0.220792935901195 0.215937253491252 0.215937253491252 0.227717502138873 0.216340165298686 0.217487871751079 0.222443642115994 0.222937232428135 1 1 - 698233 698453 698346.455 698207 698515 - gene protein_coding_gene FALSE TRUE AT1G03020.1 glutaredoxin family protein Identical to Putative monothiol glutaredoxin-S1 (AtGrxS1) (GRXS1) [Arabidopsis Thaliana] (GB:Q9SA68); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G62930.1); similar to Fgenesh protein 66 [Beta vulgaris] (GB:ABD83292.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.525490103535836 3.46607831160504 0.00787841764153468 1 4.54520826509546 11.3442422056321 0.525490103535836 0.196599997086819
AT2G44610_at 9.06243935193535 9.15889343490271 9.09972593656357 9.05829566640806 9.2501282669294 8.78820924249797 8.79778174589757 8.81895918728028 7.92054018282475 8.09671143316259 9.02283089529468 8.89548253714094 8.68188104151548 8.6190867379352 8.95937381232496 8.388485288568 8.21808856729053 7.59491006290127 8.05937698023008 0.136818710704398 0.136818710704398 0.137013713238737 0.136818710704398 0.136818710704398 0.142799359258569 0.138865047528829 0.139789159646039 0.160148627455705 0.144914259640792 0.137656255252584 0.136818710704398 0.144544587628684 0.145361400112774 0.138182676046502 0.139588508853251 0.157227309274043 0.163379121953615 0.149345996724280 2 2|0 -|/ 18418869 18420897 18419878.75 18418507 18421157 - gene protein_coding_gene FALSE TRUE AT2G44610.1 RAB6; GTP binding Encodes a GTP-binding protein with similarity to yeast YPT6 . RAB6 can complement the yeast YTP mutant. similar to AtRABH1e (Arabidopsis Rab GTPase homolog H1e), GTP binding [Arabidopsis thaliana] (TAIR:AT5G10260.1); similar to putative (GB:AAA74117.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.305772925280676 3.46554242858302 0.00788481229653816 1 4.54447144957724 17.2908342206905 0.305772925280676 0.082057391556162
AT4G30020_at 7.81496981764105 8.0426796436538 5.41506028400675 5.21133821292191 6.98654453138818 7.37181877200225 8.09176055499999 8.0692513907793 7.1900101298383 8.55348609131507 9.55381688057866 10.1179007269511 8.95014739955068 8.93835651589496 10.0586272006822 8.98696900215277 8.30888971547196 9.50286427364487 8.75116220116484 0.211680706261668 0.211680706261668 0.235232678885784 0.245291073229312 0.223274636180143 0.227366459859283 0.212468568273804 0.216519474082008 0.226932691959919 0.21231055059895 0.215849959867612 0.216717635369356 0.211680706261668 0.219337491515373 0.221845610661658 0.213585522902452 0.227485799762626 0.216016961153014 0.214195141373417 4 4 + 14681097 14681721 14681439.545 14677291 14681962 + gene protein_coding_gene FALSE TRUE AT4G30020.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G44530.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G20430.1); similar to SLP3 (Subtilisin-like serine protease 3), subtilase [Arabidopsis thaliana] (TAIR:AT2G19170.1); similar to proteinase TMP [Lycopersicon esculentum] (GB:AAB38743.1); similar to meiotic serine proteinase [Lycopersicon esculentum] (GB:AAF13299.1); similar to subtilisin-like protease [Arachis hypogaea] (GB:AAY54007.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Protein of unknown function DUF1034; (InterPro:IPR010435); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.310582289047803 -3.46506843802974 0.00789047295297295 1 4.5438197011963 15.8589692034935 -0.310582289047803 0.0851839236492792
AT1G78460_at 9.67035010630763 9.63225678721568 9.87755354416132 9.79914873904079 10.5576862626939 9.92471614302243 9.08630765560062 9.26219723729442 9.23321083638157 9.57082838544887 9.54856612852185 9.92102667929009 10.0220669482856 9.83300568518153 8.71840213006626 9.51147860325936 9.56679937653987 9.23927134862781 9.54780081841393 0.107937395881655 0.106391110330049 0.106946893653882 0.107849536753139 0.108506653695768 0.112701425375341 0.108640956850709 0.108835052166679 0.114243807149654 0.106391110330049 0.109027633906865 0.106391110330049 0.110640352956729 0.113501534471040 0.120579599266352 0.106391110330049 0.119226213949038 0.111235599651180 0.109470155853677 1 1 - 29523473 29524076 29523761.909 29523209 29524216 - gene protein_coding_gene FALSE TRUE AT1G78460.1 SOUL heme-binding family protein similar to SOUL heme-binding family protein [Arabidopsis thaliana] (TAIR:AT1G17100.1); similar to Os01g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042368.1); similar to novel protein (zgc:56136) [Danio rerio] (GB:CAI11708.1); contains InterPro domain SOUL heme-binding protein; (InterPro:IPR006917) 0.360730995674228 3.46440046172102 0.00789845756766848 1 4.54290116633123 19.2241222890269 0.360730995674228 0.114685341888916
AT1G62380_at 10.9213727870933 11.0039240245450 10.2575997789614 10.3943454942918 10.9527017845058 10.6880672338725 11.0228724858969 10.9763869753079 11.2678708127557 11.3944505429913 11.677479332305 11.7919842918729 11.3749406685800 11.3167549916107 11.3526171261563 11.3400498637294 10.7318578373811 11.1054185033114 11.7275105625513 0.0744960054968335 0.0741849526289112 0.0741849526289112 0.0756628339528248 0.076993694656283 0.0812439403593399 0.0765929927479836 0.0751734314899335 0.0802853228324431 0.0752311845104273 0.0776940073469804 0.0759619086313131 0.0741849526289112 0.0766894995510322 0.0784234202054725 0.0741849526289112 0.0820959949946544 0.0785027407568485 0.0749254327916598 1 1 + 23087105 23087697 23087420.636 23085835 23087918 + gene protein_coding_gene FALSE TRUE AT1G62380.1 ACO2 (ACC OXIDASE 2) Encodes a protein similar to 1-aminocyclopropane-1-carboxylic oxidase (ACC oxidase). Expression of the AtACO2 transcripts is affected by ethylene. similar to 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G12010.1); similar to ACC oxidase [Brassica oleracea] (GB:CAA57284.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.267424987266984 -3.46058959411577 0.00794417373613923 1 4.53765968944508 22.1769913870432 -0.267424987266984 0.0540934791737242
AT2G46510_at 4.50873953205425 5.58278467524519 3.44222024221295 4.48091048993867 4.67060328378637 4.39516791716041 4.66824092529597 5.1405294029438 4.98364629434902 5.04912971214358 4.47652643623362 4.54736193175893 4.57188885167367 4.431949160838 4.0991256825081 4.79809023346438 3.8830741712194 4.11800178724039 5.06850359188322 0.242208880698324 0.231087442835332 0.241112526002429 0.225959677514374 0.226828022254624 0.236610495004594 0.227844316167596 0.225959677514374 0.23282124157958 0.240393140510983 0.230918984087369 0.232952351283212 0.225959677514374 0.229808275919496 0.229667293489237 0.225959677514374 0.235820570872001 0.236640645278326 0.233368580574601 2 2 - 19098268 19098762 19098489.818 19098025 19100387 - gene protein_coding_gene FALSE TRUE AT2G46510.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G01260.2); similar to Os01g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042524.1); similar to bHLH protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81265.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.697927867434207 -3.46030131411888 0.00794764334665148 1 4.53726310893851 9.31090563257587 -0.697927867434207 0.275334889119228
AT3G59660_at 8.16633647397578 8.13763034938659 8.33875465280107 8.13546304402742 8.44497111198892 7.73645048297032 6.06337742118297 5.73285835864739 6.9104906828933 6.57516762116628 6.69366342838072 6.65542765996521 6.0735088438668 6.5619107791867 6.05058675937885 6.83102598665247 6.13141669967567 6.16466360538335 6.66994791006656 0.199868809290462 0.201237932728265 0.203364738509301 0.199820518334470 0.197788529375011 0.205118208079523 0.207368693366916 0.194696515253441 0.206992703662533 0.195927133998667 0.197373413537766 0.194873014723579 0.196925400155216 0.206907535691180 0.196884148350102 0.197878764664754 0.201874369930276 0.197682474349011 0.197132571545419 3 3|0 -|/ 22045425 22046470 22045942.6 22045148 22049635 - gene protein_coding_gene FALSE TRUE AT3G59660.1 C2 domain-containing protein / GRAM domain-containing protein similar to VAD1 (VASCULAR ASSOCIATED DEATH1) [Arabidopsis thaliana] (TAIR:AT1G02120.1); similar to Os09g0516900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063676.1); similar to no pollen; Osnop [Oryza sativa (japonica cultivar-group)] (GB:AAU09489.1); similar to Os02g0605400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047370.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain GRAM; (InterPro:IPR004182) 0.40779961887563 3.45926924893429 0.00796007792635634 1 4.53584322782893 14.1513856743825 0.40779961887563 0.139885111906023
AT1G08540_at 9.61769946171219 9.57129876342585 9.34938717967655 9.32763864689705 9.62696693543596 9.45200855810922 10.1173790956494 9.94303274400565 10.1650533137252 10.1413479817121 10.1098254009272 10.1342211535353 9.733687561615 9.9373577052033 10.1517929158344 10.0271409924925 9.68319966225955 9.91860063851368 9.99636692035336 0.106279887543868 0.0997253949445144 0.104560071512302 0.101955565690248 0.097626745425041 0.0982824109797254 0.100754207997871 0.100100796955285 0.113389062104906 0.098338329586785 0.102464171334619 0.0997610648325736 0.100323528371513 0.101815431045621 0.0999054382271793 0.103541804915892 0.107512983818195 0.108236077841021 0.102594601477622 1 1|0 +|/ 2705944 2706486 2706215.444 2703339 2706848 + gene protein_coding_gene FALSE TRUE AT1G08540.1 SIGB (SIGMA FACTOR B); DNA binding / DNA-directed RNA polymerase/ transcription factor Subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme similar to SIGF (RNA POLYMERASE SIGMA-70 FACTOR), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G36990.1); similar to sigma factor [Spinacia oleracea] (GB:CAD20831.2); similar to sigma factor 2 [Sinapis alba] (GB:CAB83106.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 region 1.2; (InterPro:IPR009042); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) -0.256148335483941 -3.45836463662961 0.00797099378418574 1 4.53459857454796 19.6571269193112 -0.256148335483941 0.0436540834731454
AT2G15570_at 6.8785049891906 7.39836056186066 7.41189452571869 7.33776771878654 7.05839477106097 7.67179870795102 5.47392703208303 6.28279849644965 7.62692876693023 6.68578122898234 7.8527020514225 7.09018631834631 7.41161248723629 7.47562695109396 7.08221289403099 7.3331861932209 6.41494360791333 7.26716723344878 6.83419925819819 0.176569868154083 0.173357340078434 0.171447978886126 0.172981227928332 0.169658549352246 0.185049703766192 0.185191369942524 0.170735098695417 0.174923684247824 0.175289093739558 0.172542876434924 0.178910191458672 0.174347545613213 0.171501185730324 0.171509096530569 0.167452174205170 0.169308785336484 0.180545885053682 0.177281347323181 2 2|0 -|/ 6798657 6799920 6799017.556 6798372 6800015 - gene protein_coding_gene FALSE TRUE AT2G15570.1 ATHM3 (Arabidopsis thioredoxin M-type 3); thiol-disulfide exchange intermediate chloroplast protein similar to prokaryotic thioredoxin. Identical to Thioredoxin M-type 3, chloroplast precursor (TRX-M3) [Arabidopsis Thaliana] (GB:Q9SEU7;GB:Q42072;GB:Q9SKS6); similar to ATHM4 (Arabidopsis thioredoxin M-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G15360.1); similar to putative thioredoxin m2 [Pisum sativum] (GB:CAC69854.1); similar to OSIGBa0160I14.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67005.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.526775563351098 3.45780240991607 0.00797778606104299 1 4.53382495320920 14.0841430846173 0.526775563351098 0.197788840800837
AT3G48190_at 6.32058454693615 6.23129530293423 5.4660967836836 5.64267822928268 6.93867842316101 6.06397249632408 6.43503434200102 6.3229169881769 6.41836114530124 6.63411736068499 6.18493901531154 6.46954410443767 6.17722292163162 6.082585680891 6.23113774636048 5.74880272817022 6.1701908982815 6.40512814246643 7.24142749340532 0.224257825945026 0.219823857162879 0.222737074186829 0.221544542061277 0.221813925947812 0.242074256634504 0.219523959805014 0.228262400459443 0.236925935094705 0.221288745452197 0.223332820282367 0.223015644893444 0.220534204685135 0.222733326225647 0.238916186652955 0.223824347265211 0.226782589730568 0.232428827507291 0.218297659346912 3 3|0 +|/ 17838045 17839311 17838672.444 17808319 17839576 + gene protein_coding_gene FALSE TRUE AT3G48190.1 ATM (ATAXIA-TELANGIECTASIA MUTATED) encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. Identical to Serine/threonine-protein kinase ATM (EC 2.7.11.1) (Ataxia telangiectasia mutated homolog) (AtATM) (ATM) [Arabidopsis Thaliana] (GB:Q9M3G7;GB:Q9M4D7); similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G40340.1); similar to Os01g0106700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041778.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93104.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain PWWP; (InterPro:IPR000313) -0.44027137016797 -3.45610114224239 0.00799837630331053 1 4.53148375861765 12.6518217579746 -0.44027137016797 0.156404880390352
AT3G12010_at 7.39791198362276 7.5854648272572 7.21412964558311 7.14042836435226 7.7447247149215 7.59041571552999 8.24687691754766 7.94234818593764 7.10596562640468 7.45822930589309 7.42738244400044 7.55717662678431 7.25335706852867 7.0091322640349 6.7355527131053 7.19941190095666 7.10973831092394 7.27049798828905 7.62141992222291 0.210547565022405 0.204117294559126 0.200738630865738 0.198298519466218 0.196026470618462 0.196026470618462 0.210106796627975 0.198381145964431 0.207052814972537 0.206751653857525 0.198624868094269 0.196694859523152 0.196026470618462 0.198814674902048 0.209645795517790 0.197335841321208 0.213717013171957 0.205763199812796 0.201216973940335 3 3|0 +|/ 3824692 3825512 3825149.6 3821523 3825771 + gene protein_coding_gene FALSE TRUE AT3G12010.1 similar to Colon cancer-associated protein Mic1-like containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47549.2); similar to Colon cancer-associated protein Mic1-like containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47548.2); similar to Putative Mic1 homolog [Oryza sativa (japonica cultivar-group)] (GB:AAK50423.1); contains InterPro domain Colon cancer-associated Mic1-like; (InterPro:IPR009755); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047) -0.285324827711795 -3.45507727797878 0.00801079499941283 1 4.53007458383351 14.9030306023864 -0.285324827711795 0.0686041081267335
AT3G52930_at 10.7158574928857 10.8165027557948 10.9922263293144 11.0972200114279 10.4356136852716 10.5433957535973 10.9724267285324 11.3312660705339 10.6094265677686 10.4577184708639 11.3374430423965 11.4728835019965 11.1411207999703 11.2112410240796 11.5356200239650 10.9776415210271 11.0053777198340 11.0801622870050 10.2989375705149 0.0706627238549475 0.066135380816198 0.0691436409519942 0.066135380816198 0.0686971989966474 0.0693730396860106 0.0665221384988392 0.0662769968306767 0.0693131670399025 0.0694140707901585 0.066135380816198 0.066844689100409 0.069039665044675 0.0708179072216269 0.0673114669984582 0.0663707306573248 0.0720007634082438 0.066135380816198 0.066406523606129 3 3 - 19638420 19638884 19638676.636 19637726 19640051 - gene protein_coding_gene FALSE TRUE AT3G52930.1 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT2G36460.1); similar to Fructose-bisphosphate aldolase, class-I [Medicago truncatula] (GB:ABE84500.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) 0.286463026642263 3.45308514816137 0.00803501628625687 1 4.52733235432102 21.7008371582948 0.286463026642263 0.0695532916052621
AT3G47500_at 10.9344148861404 11.0309406330444 11.0327598675197 11.1181978115486 11.4442113226852 11.2924938867704 11.9527938290836 11.9583981938430 11.4873423562283 11.7178058182601 11.3996502758450 11.2884425607383 11.4953461199913 11.4114646737143 11.1523659004136 11.5441684274663 11.3084208063044 11.3109116784832 11.6302936554275 0.0718601879283107 0.0724896644873764 0.0765458829825937 0.073662668589469 0.072358488522633 0.0808920066823551 0.0731584707546665 0.0718601879283107 0.0738577294518133 0.074447876573085 0.0739129493761787 0.0720319051973898 0.07563062838995 0.0730754090458805 0.0727386013211598 0.0718601879283107 0.0780667980111786 0.0743176770105018 0.0733139691449953 3 3 - 17515278 17515732 17515533.909 17514985 17517042 - gene protein_coding_gene FALSE TRUE AT3G47500.1 CDF3 (CYCLING DOF FACTOR 3); DNA binding / protein binding / transcription factor Dof-type zinc finger domain-containing protein, identical to H-protein promoter binding factor-2a GI:3386546 from (Arabidopsis thaliana). Interacts with LKP2 and FKF1, but its overexpression does not change flowering time under short or long day conditions. Identical to Dof zinc finger protein DOF3.3 (AtDOF3.3) (H-protein promoter-binding factor 2a) (DOF3.3) [Arabidopsis Thaliana] (GB:Q8LFV3;GB:O81600); similar to CDF1 (CYCLING DOF FACTOR 1), DNA binding / protein binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G62430.1); similar to AOBP (ascorbate oxidase promoter-binding protein) [Cucurbita maxima] (GB:BAA08094.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) -0.247594400666312 -3.4521545133225 0.00804635783351498 1 4.52605112425185 22.8333564281668 -0.247594400666312 0.0344663253016228
AT4G22840_at 5.35866633355826 5.84703575426343 5.4614738550215 5.3370938831136 5.83873906695407 5.14692886540041 5.12225424899836 5.22562275275545 4.64235849422004 3.9268647782555 4.70453041330231 5.52040098524661 5.27035316535683 5.57403523381085 4.46290578460012 5.87698941618644 3.94793459481075 4.87700515503882 4.14073494812173 0.265956650156811 0.267826374748518 0.26933974175989 0.274070683541638 0.263621961374854 0.264194333095465 0.269241197156992 0.263500584770588 0.274928790379626 0.266798261997801 0.262442275010309 0.264241235507822 0.263172145089837 0.266286702195634 0.26374453110989 0.264508882530148 0.277538292156343 0.265543392287111 0.268406485833185 4 4|0 -|/ 11991670 11992487 11992190.1 11991508 11993781 - gene protein_coding_gene FALSE TRUE AT4G22840.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G12030.2); similar to Os02g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046843.1); similar to Os09g0520600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063701.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) 0.425140374286763 3.45075076267618 0.00806349711475325 1 4.52411832402 10.0501878868797 0.425140374286763 0.149194948292771
AT3G33520_at 6.70853978525294 6.74272546776514 7.10373744577622 7.37993308330303 7.64871655269143 7.6482073042587 6.99530435326773 6.99717643789961 7.45540245930157 6.95730467479181 7.39864568224949 7.29129539648511 6.9359706680032 7.1580550831429 7.06384288930697 7.42299663682866 6.95183579900468 7.4020601119762 7.38845458834458 0.180200558598716 0.177537019598191 0.182174205545084 0.191753997394792 0.189547484239473 0.183425656246442 0.184564175881637 0.180132362886704 0.187310069604896 0.18980485499902 0.191176874223079 0.178550035223674 0.192816307560099 0.186527512820508 0.184086614092777 0.178753344519211 0.190290460198803 0.188513339463149 0.184019740777408 3 3|0 -|/ 14104797 14105757 14105252.1 14104642 14106535 - gene protein_coding_gene FALSE TRUE AT3G33520.1 ATARP6; structural constituent of cytoskeleton Encodes ACTIN-RELATED PROTEIN6 (ARP6), a putative component of a chromatin-remodeling complex. Required for both histone acetylation and methylation of the FLC chromatin in Arabidopsis. Located at specific regions of the nuclear periphery. Expression throughout plants shown by in-situ and immunolocalization methods. Mutants show defects in fertility, leaf, flower and inflorescence development and shorter flowering times. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to actin-related protein 6 [Capsella rubella] (GB:ABA18103.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.260122980678163 3.4505713969132 0.00806568987504 1 4.52387133941645 14.3881133992038 0.260122980678163 0.0481628431781658
AT4G19100_at 8.11080815309618 8.07705879722198 7.46060035530046 7.05587753474454 8.26523267393351 7.47373116367272 8.44421166372444 8.09104659695592 8.15724256139198 8.34608580546623 7.77741250823778 8.22807312308045 7.82954166129684 7.90223457431346 8.75073481391229 7.56151380823612 7.42244737264993 7.46571686267978 7.9976178463233 0.197684974309052 0.191327985776301 0.20004876387354 0.206987688429213 0.192234944178885 0.206028318000352 0.187575174795662 0.189456940231776 0.208590957037714 0.187575174795662 0.192559179337188 0.187575174795662 0.187575174795662 0.191155320465781 0.196385929840346 0.188858307782739 0.230378993907079 0.191794257998018 0.195646157856427 4 4 + 10453841 10454336 10454097.364 10453426 10454370 + gene protein_coding_gene FALSE TRUE AT4G19100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G52780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61615.1) -0.458346800673249 -3.45056691400165 0.00806574468702632 1 4.52386516644355 15.8894165731369 -0.458346800673249 0.165639602616967
AT1G68580_at 7.65084245475062 7.77109187208353 7.35687987336234 7.16907901992184 7.91331560107362 7.81406102003448 7.81013971767263 7.64869537691502 8.04893578158446 7.22130154947397 7.87064804127425 7.62664378015866 7.28682249223747 7.61248089388298 6.74212614164633 7.14071095186653 7.04926489161157 6.39662742302854 7.48280430229268 0.154833060839650 0.157602373892476 0.160271449125777 0.159135278883672 0.158369808958732 0.156361343947299 0.159659357534765 0.158684117004150 0.168920697750349 0.162837661957407 0.156775424994002 0.157420018251853 0.155968404052979 0.164677926527331 0.164845328229071 0.158154761564323 0.163405199814261 0.188123658676262 0.158070596365658 1 1 + 25758902 25759381 25759109.091 25756398 25759739 + gene protein_coding_gene FALSE TRUE AT1G68580.1|AT1G68580.2 agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55600.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99338.1); similar to Os08g0431100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061860.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025)|similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55600.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99338.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.26277005545556 -3.45041283870915 0.0080676287844962 1 4.52365300300824 15.0417695110169 -0.26277005545556 0.0506446860986201
AT4G33910_at 7.99901179132472 8.14971719524682 8.23706367918068 8.48852537892439 8.6738935786869 7.7272294578471 7.43280457081997 6.78597298818244 7.39631459861884 7.1571112911798 7.63067720620446 7.76520478880582 7.33077392395992 7.97098530735541 7.0166445651311 7.8605632976601 7.6421306057627 7.93253464259524 7.20313548352099 0.193911015818060 0.18384507014652 0.193255463495417 0.187461763314035 0.198634647954031 0.198626632833611 0.197325399863671 0.190105381318549 0.20203058848329 0.193954869259527 0.185078055594519 0.185246523121279 0.186326875357398 0.197500465602165 0.195508320297036 0.184713967825902 0.204675677699401 0.192560965842695 0.192996619132634 4 4|0 -|/ 16256996 16257942 16257448.889 16256738 16258776 - gene protein_coding_gene FALSE TRUE AT4G33910.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G23096.1); similar to prolyl 4-hydroxylase [Nicotiana tabacum] (GB:BAD07294.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.540651777505373 3.45039639388166 0.00806782990614874 1 4.52363035810611 15.3847155383387 0.540651777505373 0.204798270477042
AT3G03550_at 5.34202626482449 5.55186381927136 5.44605221512634 5.29099644886327 5.63229707017982 5.51264091601237 5.14044328266552 5.31387847051526 5.75470844369346 5.5714595435981 6.44357654787798 6.13358744247858 6.25600984533533 6.0379014014867 6.28184543392704 6.16588430136832 5.99340875208026 6.09788518132579 5.97596862584203 0.191446228146589 0.190669946315291 0.198230747996907 0.198558319191649 0.195304593321276 0.21303402700794 0.196946488967271 0.192892391348971 0.202850749964710 0.193723693260793 0.201308255545306 0.194358725364404 0.189880205896489 0.200685841830208 0.206636247037945 0.193034185431520 0.189880205896489 0.19625947932145 0.194643667551226 3 3 - 850446 850823 850634.545 850115 851597 - gene protein_coding_gene FALSE TRUE AT3G03550.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3A (ATL3A) [Arabidopsis Thaliana] (GB:Q9SRQ8;GB:Q9SS59); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G17600.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE85148.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.271163597708385 3.44869044892265 0.00808872248549447 1 4.52128103706955 11.3755954280721 0.271163597708385 0.0580369330484706
AT1G71800_at 6.90228527730654 6.68506451914374 6.69163406673748 6.80116031632766 6.8258766300392 6.67954608664186 5.66714815736059 5.5863283276969 5.02706960238029 4.9734641766014 4.91275713890039 5.21850252779943 5.38861340598645 5.41876785982203 5.230405194825 4.8513331699009 5.06727878577698 5.20230425905578 5.52322192529914 0.200846983191521 0.203343151999858 0.203951168935836 0.207851250391454 0.205325916711905 0.216734137378192 0.204581785090341 0.197804826985306 0.232665724352939 0.194864370635018 0.200791673929010 0.197097135856394 0.194864370635018 0.194864370635018 0.203809725291139 0.195227489077981 0.214801603147839 0.199188922804284 0.197543413722979 1 1 + 27004771 27005485 27005110.727 27003114 27006004 + gene protein_coding_gene FALSE TRUE AT1G71800.1 cleavage stimulation factor, putative similar to ESP1 (ENHANCED SILENCING PHENOTYPE 1) [Arabidopsis thaliana] (TAIR:AT1G73840.1); similar to Os11g0176100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065883.1); similar to PREDICTED: similar to cleavage stimulation factor subunit 2 isoform 8 [Canis familiaris] (GB:XP_861476.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.263003881278848 3.44721375475646 0.00810685347537942 1 4.51924711273509 11.6477956864161 0.263003881278848 0.0510805454171944
AT1G62820_at 6.97592034296367 7.07048131955141 7.4262728728697 7.26180140694565 7.44296908063432 7.45239350294619 7.03911400351346 7.2350382604215 7.16987777246058 6.52757941022049 7.29595942106376 6.86301209469603 7.02367451252906 7.09944617046707 7.01870148488571 7.03835980931188 7.25221432148477 6.94563516253734 6.89774843779234 0.167284410041918 0.164330928188352 0.164246539919938 0.170042572381697 0.164709514864891 0.169376389571358 0.166331981368123 0.162371609729308 0.171285673957870 0.184651262076047 0.164948276692063 0.159855556428111 0.166954547118293 0.160830071712325 0.164172013204735 0.164819243882653 0.161212317669222 0.193845087683905 0.171699976739827 1 1 - 23267565 23267892 23267739.545 23267336 23268014 - gene protein_coding_gene FALSE TRUE AT1G62820.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G12310.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.258888783100304 3.44715157934 0.00810761780971065 1 4.51916146906979 14.2040958048706 0.258888783100304 0.0472245141567541
AT2G19860_at 6.5967500680214 6.7803731007405 6.6081682447755 6.58403165882754 7.0277390151075 7.01274846483968 8.00861038842895 8.30117021051596 6.24016531098755 7.06587308114352 6.37486948801758 6.75454292096717 6.68036584674289 6.70730524129219 6.15691174624117 6.54457681870676 6.7867247002186 6.69542132141796 6.25605328086337 0.213460017064477 0.204153939779197 0.210090479201126 0.211469381257036 0.203254950668580 0.210372542894904 0.221333262599016 0.224368636684034 0.211813384569958 0.208568400350873 0.202437432229579 0.206556746245122 0.210284226586153 0.211870035800027 0.214845661767787 0.202437432229579 0.217871002036119 0.209931377213518 0.210255123693236 2 2|0 +|/ 8580190 8580796 8580505.875 8577832 8581082 + gene protein_coding_gene FALSE TRUE AT2G19860.1|AT2G19860.2 ATHXK2 (HEXOKINASE 2); ATP binding / hexokinase|ATHXK2 (HEXOKINASE 2) Encodes a protein with hexokinase activity (AtHXK2) and acts as a sensor for plant sugar responses. Identical to Hexokinase-2 (EC 2.7.1.1) (HXK2) [Arabidopsis Thaliana] (GB:P93834;GB:Q84WJ5); similar to ATHXK1 (GLUCOSE INSENSITIVE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT4G29130.1); similar to hexokinase [Brassica oleracea] (GB:AAL60583.1); similar to hexokinase [Brassica oleracea] (GB:AAL60584.1); similar to hexokinase [Citrus sinensis] (GB:AAG28503.1); contains InterPro domain Hexokinase; (InterPro:IPR001312)|Identical to Hexokinase-2 (EC 2.7.1.1) (HXK2) [Arabidopsis Thaliana] (GB:P93834;GB:Q84WJ5); similar to ATHXK1 (GLUCOSE INSENSITIVE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT4G29130.1); similar to hexokinase [Brassica oleracea] (GB:AAL60583.1); similar to hexokinase [Brassica oleracea] (GB:AAL60584.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) -0.27333077996004 -3.44600021133112 0.00812178552628506 1 4.51757542167159 13.6690923862981 -0.27333077996004 0.0599768516276114
AT4G36040_at 12.7796699818914 12.9236725495654 13.1995875998784 13.2563667993727 13.2843538752478 13.3749779728905 12.0295153475489 12.4364297443140 12.1463482057142 11.9176183947713 11.6369166254195 11.4771907064248 12.4513698895125 12.0848607686224 11.1067573302076 12.2579858611403 12.0386247259263 11.8721616817051 11.9643428084524 0.0776358272486939 0.0730358991326554 0.0784705142994735 0.0767965763406821 0.0739479723702067 0.080923485148123 0.0760428745499018 0.0750337833952572 0.077473846463397 0.0731502395001474 0.0766945953095067 0.0743423341821955 0.073095567376817 0.076731118963014 0.0748784577262482 0.0730358991326554 0.0791438102005587 0.0752088569407897 0.0754590231796179 4 4 - 17049770 17050054 17049916.636 17049174 17050277 - gene protein_coding_gene FALSE TRUE AT4G36040.1 DNAJ heat shock N-terminal domain-containing protein (J11) Identical to Chaperone protein dnaJ 11, chloroplast precursor (AtJ11) (AtDjC11) (ATJ11) [Arabidopsis Thaliana] (GB:Q9FYB5;GB:O65641); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT2G17880.1); similar to DnaJ-like protein [Phaseolus vulgaris] (GB:AAB36543.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.296398317495643 3.44587314358628 0.0081233507069035 1 4.51740037085621 24.8481566929715 0.296398317495643 0.0769563544650843
AT4G29020_at 7.1478620465953 7.02466164862308 4.67247737050658 4.78558498794049 4.67853608832212 5.19694247773925 4.61381319920652 4.97146550978329 5.90323383498358 5.47049197621735 6.01819603115315 7.19945373845109 5.31805967190101 5.27004152288435 6.8867152473838 6.01802159641942 5.22970651707735 5.60012902542632 5.26663208256352 0.279050537615976 0.274593321878733 0.236016212640785 0.242317650741609 0.241671703089425 0.233418620749254 0.242959286458655 0.242812171164532 0.243541337555754 0.246917647401137 0.236101908215219 0.254144102930840 0.237233621073764 0.235569609744469 0.244083583211456 0.235558107121253 0.240883685462013 0.241513779784008 0.239395923622561 4 4 + 14305041 14305490 14305248.909 14304927 14305727 + gene protein_coding_gene FALSE TRUE AT4G29020.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G04660.1); similar to unnamed protein product [Triticum tur (GB:CAJ13547.1) -0.355155457838011 -3.44398253934182 0.00814667615053426 1 4.51479558680047 11.1310811078022 -0.355155457838011 0.112768988109890
AT2G25660_at 6.2431445003191 6.67807421933853 6.33605354255156 6.30278143683014 7.0877344402008 6.50051799578152 6.84600569430068 6.75438175117505 7.17227890398613 7.29992666054883 6.4259333328117 6.92468716041586 6.95142310357432 6.46210201270687 6.54663086965091 6.84059040349926 6.31705897510578 6.41299527195205 7.43159683261934 0.212917972439707 0.199523636281149 0.202912753753095 0.220633082757641 0.206083387165370 0.214316011101552 0.20615626894408 0.201876803059604 0.213515838959286 0.210782731192161 0.202905460019153 0.20577030688698 0.209726103218879 0.216618323513945 0.199523636281149 0.204515912239014 0.219483011784886 0.211491958653614 0.211702341517393 2 2|0 -|/ 10923536 10924274 10923884.111 10923281 10934468 - gene protein_coding_gene FALSE TRUE AT2G25660.1 EMB2410 (EMBRYO DEFECTIVE 2410) similar to Os01g0179400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042199.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67835.1); contains domain Pyruvoyl-dependent histidine and arginine decarboxylases (SSF56271) -0.38235975597292 -3.44347934881387 0.0081528961749455 1 4.51410223494813 13.5493092510285 -0.38235975597292 0.127578850415281
AT1G72030_at 9.3491473488185 9.43790173293758 9.59694009260294 9.55239063639034 9.40576650656457 9.19622968985913 10.1128680756279 10.1753736853564 9.8408404305269 10.1207322507242 9.66912174191079 9.83080246269645 9.8491941826045 9.828295588644 9.6967145609029 10.3409372858038 10.1254834577091 9.77340574833435 10.2304434612802 0.102100287517816 0.10373954073639 0.104625898162547 0.106330303594869 0.105662938833309 0.110927790357055 0.107287086259769 0.100755677559728 0.11328608661477 0.111083558125125 0.106800667862894 0.101208532290208 0.106685114463365 0.10622493155819 0.107706615847209 0.100755677559728 0.110845300538268 0.107308044157439 0.10196240370722 1 1|0 +|/ 27114802 27115422 27115173.9 27114527 27115594 + gene protein_coding_gene FALSE TRUE AT1G72030.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84763.1); similar to Os07g0264800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059331.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.252875990799439 -3.44093922342085 0.00818437155668618 1 4.51060165482502 19.5799521007294 -0.252875990799439 0.0415600146764863
AT2G37450_at 8.60880898271065 8.67449478001102 7.89193208844112 7.93812336937727 8.99784716740879 8.34496194441963 9.18348913444466 9.12300906057825 8.79313403158974 9.32544050443805 9.06247774677442 9.62073003424472 9.23683304214998 9.19095254866489 9.29736115431322 9.09324962882701 8.63917151821688 8.69144576248813 9.52568071038267 0.158257793383522 0.151002399538149 0.168891984719697 0.174251322750191 0.149195525979063 0.166450566923028 0.150048272987006 0.148795392269117 0.160752863927405 0.150016567114533 0.159736335981638 0.155201391900748 0.158110814187363 0.160499348131858 0.155118456740535 0.157956618387905 0.160120237482144 0.160204716369062 0.153369127584648 2 2|0 -|/ 15729981 15730736 15730413.8 15729647 15732141 - gene protein_coding_gene FALSE TRUE AT2G37450.1|AT2G37450.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G37460.1); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE82104.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.357479208184013 -3.43955986259308 0.00820151719119964 1 4.50870038121483 17.7547230300556 -0.357479208184013 0.114316354950731
AT2G36320_at 10.6283500087016 10.7683934812461 10.9208628296030 10.8919717622683 11.4604490600652 10.8371936171296 10.6775961798259 10.6267528073187 10.0803880877601 10.3520881486570 10.8484485046966 10.5961983489433 10.7163025464763 10.7117944226331 10.2862749011653 10.8114937142945 10.5496888564853 10.1083273158511 10.2510507240477 0.087437052464888 0.0883773412168344 0.0942777081970161 0.0906868729338346 0.0887796841706612 0.093904096415009 0.0878227230859507 0.0894127810634002 0.0968310680492626 0.0911086695229443 0.0962931380805208 0.087437052464888 0.0900851294686935 0.0948524774065976 0.10005571288007 0.087437052464888 0.099756178475275 0.0971308453711934 0.0930090823823814 2 2 + 15236473 15236919 15236687.455 15235867 15237575 + gene protein_coding_gene FALSE TRUE AT2G36320.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 4 (AtSAP4) (SAP4) [Arabidopsis Thaliana] (GB:Q9SJM6;GB:Q0IGN9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT3G52800.1); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.351534977078365 3.43934356407951 0.00820420923946897 1 4.50840221834685 21.2546504165063 0.351534977078365 0.111008768563010
AT1G02330_at 6.8486456086986 7.53674374269125 6.78147612978922 6.95121202148343 7.24212770943711 6.39505591481538 6.94246941556272 6.94632826034608 6.88301363642699 6.9121060524128 6.50726481206448 6.42866109537423 6.22392480590454 6.41371146762803 5.95529734965756 6.08557697970695 5.98337252906704 6.18352851300982 7.2536650646724 0.197366078515991 0.194942261249614 0.204041290383322 0.201474069826239 0.199729052436370 0.205758858532525 0.196969996937721 0.198198489911281 0.209649719730900 0.195159225959200 0.194942261249614 0.194942261249614 0.201399298805176 0.199662883383846 0.201368279854116 0.197489388222031 0.213929792155967 0.20360123936581 0.197138304095511 1 1|0 -|/ 462208 463145 462639.3 462075 463612 - gene protein_coding_gene FALSE TRUE AT1G02330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF90174.1); similar to Os03g0374100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050211.1); contains InterPro domain Hepatocellular carcinoma-associated antigen 59; (InterPro:IPR010756) -0.50983660169793 -3.4392114315433 0.00820585421708332 1 4.50822007342854 13.5749717396308 -0.50983660169793 0.191132184264442
AT2G40810_at 5.91220817228917 6.309924859121 6.49153849228896 6.42429036452684 6.61156372944116 6.79152573165173 5.92247898846636 6.03063238380048 5.37441726131416 5.56799093965791 5.78802163010723 5.40878587603643 5.67638945944339 5.6980608941517 5.15543763027573 5.74379776547957 5.85795292749904 5.40321214191133 5.64968311729125 0.218782429674238 0.219749262103506 0.218782429674238 0.221221710853836 0.221331583420321 0.232820656928593 0.218782429674238 0.227179619089031 0.224179599669662 0.221971527859747 0.218782429674238 0.224997723472138 0.218782429674238 0.232503641902001 0.219812548686942 0.227901471137787 0.226066858550181 0.224631320297826 0.220320495592841 2 2|0 +|/ 17040371 17041392 17040870.3 17039542 17041678 + gene protein_coding_gene FALSE TRUE AT2G40810.1|AT2G40810.2 AtATG18c (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) c) similar to AtATG18d (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) d) [Arabidopsis thaliana] (TAIR:AT3G56440.1); similar to P0028E10.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB39916.1); similar to Os01g0168500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042130.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.298339331541601 3.43863466720601 0.00821303868557377 1 4.5074249757847 11.8728475385486 0.298339331541601 0.0786940948651241
AT4G30410_at 5.92236374205337 6.66803177803875 5.29030150677721 4.94392475333976 6.65937894595582 6.84701454384548 5.31626569698621 5.84729921399893 7.26707376328373 6.27612795371453 8.36351845241424 7.87895052229447 8.35266041481284 8.19855272447592 8.77394976198393 8.0701682981574 6.92099260436854 7.67639715996391 7.71090518307178 0.192189198674971 0.181888520086751 0.197857944026842 0.198915927917592 0.186184320091014 0.18847237974606 0.194236268710354 0.184200470645453 0.192900950571496 0.198490163701487 0.181888520086751 0.181888520086751 0.185574213676205 0.186874212449163 0.186203885205908 0.186250593911023 0.185548965016217 0.188177386352782 0.182706951525673 4 4 - 14871327 14871833 14871632.364 14871115 14872182 - gene protein_coding_gene FALSE TRUE AT4G30410.1|AT4G30410.2 transcription factor| similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19120.1); similar to Os02g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046079.1); similar to Os08g0260400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061389.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) 0.470680635997909 3.43796212606009 0.00822142456606097 1 4.50649778957697 13.4938730437906 0.470680635997909 0.172465394879505
AT1G28410_at 5.15869106492367 4.93781988666199 4.51116260577516 4.24015091886803 4.69946233001244 4.31159610347923 5.02569130363394 4.78615796764219 4.6584313904285 5.35765072035643 4.84039756675638 5.22582520390102 4.43290115231338 5.00246959473276 4.93515269532494 4.57715722210303 4.76264768192052 4.88548006398949 4.85973910977514 0.221527788992672 0.214794790893774 0.213645688101694 0.212572771770355 0.209948379452021 0.224402706081959 0.210504193637724 0.223469821188163 0.219511471298548 0.211606766406372 0.211263933349467 0.212061928718215 0.211492589531149 0.215580947322026 0.218388156050384 0.218398618663679 0.215515060219463 0.217238441979838 0.213826262399948 1 1|0 -|/ 9976368 9977932 9977099.444 9976168 9979253 - gene protein_coding_gene FALSE TRUE AT1G28410.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.2); similar to Os02g0305600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046635.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72581.1); similar to Os08g0519400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062259.1); contains domain no description (G3D.1.10.274.10); contains domain E set domains (SSF81296) -0.331175121035782 -3.43681096654464 0.00823579924913211 1 4.50491062635215 9.60452200819969 -0.331175121035782 0.099419541465477
AT3G57020_at 8.84846616996103 9.00757824796704 9.47187244496347 9.56930792992575 9.66710556737918 9.46179688375637 10.3532862516562 10.3319760938462 9.091479952566 9.3464081981882 9.83969972921767 9.681260481655 10.0641888565941 9.9891274711161 9.29522416145722 9.53975623758657 10.2159945789257 10.0333278162817 9.22707820288017 0.103027323625601 0.102040916807562 0.0988109888557895 0.100713999604850 0.103999964832802 0.107856704147346 0.106952105344187 0.102806229122869 0.117691142054835 0.100723024198679 0.0990593457098258 0.102968174394214 0.100667633972542 0.101696215126922 0.102955564440530 0.102186492819517 0.107911327639182 0.106479290966385 0.100617343470786 3 3 - 21109521 21110044 21109826.091 21109294 21111339 - gene protein_coding_gene FALSE TRUE AT3G57020.1|AT3G57020.2 strictosidine synthase family protein|strictosidine synthase similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57010.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); similar to putative strictosidine synthase [Oryza sativa (japonica cultivar-group)] (GB:AAR87254.1); similar to Os03g0750700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051286.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141)|similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT3G57010.1); similar to putative strictosidine synthase [Oryza sativa (japonica cultivar-group)] (GB:AAR87254.1); similar to Os03g0750700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051286.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.258930490520678 3.43492675091058 0.00825938485174068 1 4.50231238291428 19.1159126325898 0.258930490520678 0.0481502967383744
AT1G13110_at 11.3255251040023 11.4770477427943 11.2555488554665 11.3012434634261 11.962136683641 11.7474072938191 10.7883001322317 10.7181401573412 10.7095654234437 11.1133569119657 10.9484426475624 11.2313337048532 11.3258245149599 10.8450720418008 10.8731720233258 10.9492190472509 10.7709019464117 11.1167648742532 11.1173001080784 0.0740726422139587 0.0707114304419217 0.0721271329680719 0.0716040730315248 0.0754869772781166 0.0731344098553152 0.0721340269775158 0.071395187520492 0.0766946362097845 0.0730520067881126 0.0697343500484119 0.0701659432407604 0.0709427824596914 0.0738399861982851 0.0716605786884563 0.0697343500484119 0.074595636667273 0.0712967632366656 0.0722796541382832 1 1 + 4468256 4468816 4468538.727 4467218 4469031 + gene protein_coding_gene FALSE TRUE AT1G13110.1 CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7); oxygen binding member of CYP71B Identical to Cytochrome P450 71B7 (EC 1.14.-.-) (CYP71B7) [Arabidopsis Thaliana] (GB:Q96514); similar to CYP71B23 (cytochrome P450, family 71, subfamily B, polypeptide 23), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26210.1); similar to CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13090.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.258423996109401 3.43397799877186 0.00827128773936587 1 4.50100392162407 22.315751428031 0.258423996109401 0.0477324292011891
AT1G47970_at 7.44243747072203 7.45143591502163 7.15311700865562 7.33684527270255 7.44680340781161 7.2422854941337 6.69524480172784 7.0268997919665 6.5975643351393 6.96935120643299 7.3558171417094 7.35635108698561 7.41075920786234 7.22215880032913 7.42848824791902 7.36743917802766 7.09410112916032 6.9438932802417 6.92216792855594 0.121207131458906 0.118221320644654 0.119996700779232 0.117823990581642 0.122012970966697 0.119502632211117 0.124055112384551 0.120191009158691 0.128933751592356 0.119841737930283 0.117267429412484 0.119683244424915 0.115296889761142 0.118974469405703 0.117377439647835 0.117278602380861 0.123824951513618 0.120033538141474 0.117346029150750 1 1 + 17691062 17692202 17691761.545 17690938 17692485 + gene protein_coding_gene FALSE TRUE AT1G47970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17160.1); similar to conserved hypothetical protein [Bacillus weihenstephanensis KBAB4] (GB:ZP_01184818.1); similar to Os01g0332900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042934.1) 0.291719909976512 3.43171769407813 0.00829971799031447 1 4.49788616869618 14.2754188948788 0.291719909976512 0.0745662116743672
AT1G76560_at 6.62308228339145 6.60562509499618 5.52884786237347 5.50626815811749 6.19164267638703 6.34037218272254 5.69670145815936 5.9694625091444 4.9107199163581 5.39735159202125 4.52418997439606 5.11724597758755 4.90507853160098 5.36246580889915 4.37751236473141 5.07444499811427 5.71471284680002 5.09965619288569 5.35178346734564 0.246163725757406 0.247937547870442 0.245293187133118 0.246353142437573 0.248231945521664 0.25196800239182 0.256498276025102 0.249275054336027 0.251448720751661 0.250652893847795 0.250212417764437 0.250164300662653 0.244113535107869 0.245566436424656 0.252916455417249 0.244113535107869 0.24808396516879 0.244490896124346 0.250930282236518 1 1 + 28733189 28733541 28733351.455 28733147 28733747 + gene protein_coding_gene FALSE TRUE AT1G76560.1 CP12-3 similar to CP12-1 (CP12 domain-containing protein 1) [Arabidopsis thaliana] (TAIR:AT2G47400.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10071.1); contains InterPro domain Protein of unknown function CP12; (InterPro:IPR003823) -0.264986719110408 -3.43056489889037 0.00831425752624914 1 4.49629580076837 11.1786827758874 -0.264986719110408 0.0539901856145086
AT1G20880_at 5.7222672270999 5.15839626059943 5.90948253225148 5.72135130817367 5.58092618077831 6.54866980928418 4.70267774544875 4.96966733465021 4.35111599762104 4.20719503331231 3.75764407264205 4.02653447351174 4.78428416976749 4.1579305758835 4.04375219886144 5.07574261347463 5.40614619925459 4.56421031025598 4.09033121972975 0.273850138033149 0.274707794295183 0.266557164721788 0.2694615215318 0.276900112856713 0.279011505243336 0.267300141245596 0.278480813669279 0.267288421976368 0.270844983834051 0.269997109821208 0.267409781653969 0.276221460444215 0.267681084733349 0.266158621983023 0.271732358456025 0.274201866466560 0.268015185940791 0.273783519381779 1 1|0 -|/ 7262897 7264223 7263493.111 7262032 7265427 - gene protein_coding_gene FALSE TRUE AT1G20880.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G76460.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.531335904412201 3.43037943986699 0.00831659911650114 1 4.49603992972887 9.88580212991613 0.531335904412201 0.201900362501833
AT3G60300_at 9.61871381066351 9.72398263328494 8.96969607944131 9.12079327805559 10.0154125135544 9.8814566753243 8.48787415345756 8.73029257449094 10.2921641324372 9.8685962889933 9.62664713823479 9.36849667675837 9.33508730995784 9.5444831587115 8.69516799432346 9.34653447729748 8.27553502932528 9.03517140434574 9.98360719400014 0.112542473737436 0.112116471657994 0.115776431509325 0.115362927416007 0.115832084316837 0.115154328684407 0.116453979648432 0.111059182724098 0.115202759363309 0.110977652905271 0.115171464549331 0.111290680845485 0.110977652905271 0.114284967876347 0.111448338783664 0.113509050785264 0.141614129776504 0.119404476040511 0.112089762267838 3 3|0 +|/ 22297619 22298284 22297984.778 22296286 22298454 + gene protein_coding_gene FALSE TRUE AT3G60300.1 RWD domain-containing protein similar to RWD domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94379.2); contains InterPro domain RWD; (InterPro:IPR006575); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.269054148118956 -3.4291824273968 0.00833172921118325 1 4.49438834656682 18.9192841833321 -0.269054148118956 0.057557977514623
AT3G22950_at 8.71499235227367 8.84209864742722 8.80016680978639 8.75480444980692 8.96746839864631 8.63433377877593 8.55228327925416 8.63606196386241 8.15586671823019 7.98950095266036 8.57978504142026 8.73724377660996 8.49153638202776 8.67770024468453 8.46126434215842 8.54644784448661 8.28679008068707 8.37013693350148 8.0588773271629 0.133378126851081 0.127251361402069 0.129279468603636 0.128958743659650 0.133497609536962 0.131945312882107 0.132262220295700 0.129355161264032 0.147307247324285 0.140906999627549 0.133261869597630 0.12665038228298 0.136284743468101 0.129576278956856 0.138022185564689 0.132721979122241 0.143157341276307 0.138957797464176 0.134871950041666 3 3 - 8136406 8137493 8136857.909 8136189 8137928 - gene protein_coding_gene FALSE TRUE AT3G22950.1 ATARFC1 (ADP-ribosylation factor C1); GTP binding A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to ADP-ribosylation factor GB:P91924 (Dugesia japonica), other ARFs and ARF-like proteins. similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to Os11g0586900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068170.1); similar to ARF-like protein [Dictyostelium discoideum AX4] (GB:XP_645417.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.276807856614359 3.42786110969596 0.00834846416827268 1 4.49256503412496 17.0312485833365 0.276807856614359 0.0638689640534579
AT3G56820_at 5.98130458969748 6.2603006426009 6.51019667121395 6.28222094030903 6.78411758084347 6.52109144300438 5.93818074323618 6.17383145119127 5.5010074024542 5.37251764057427 5.66350667688442 5.25374380556651 5.91685003656095 5.80253534528598 5.18402829697723 5.464302435468 5.99496576863862 5.89146683061421 5.51052053991024 0.222566352216000 0.225862147896137 0.224878021834069 0.232443757059427 0.227022077812816 0.236503624409618 0.227107688886788 0.221820027572755 0.252865894219575 0.224276761218779 0.230237739398303 0.219477523985506 0.226057935850538 0.226927445614703 0.234265666655464 0.220531986037698 0.231493858561831 0.226321823673862 0.221308484169891 3 3 - 21051061 21052536 21051834.455 21050782 21052739 - gene protein_coding_gene FALSE TRUE AT3G56820.1 similar to Cupin, RmlC-type [Medicago truncatula] (GB:ABD28667.1); similar to Os01g0810200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044582.1); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.310539337007254 3.42758548876943 0.00835195946414095 1 4.49218467045934 11.8602922213349 0.310539337007254 0.0873070189281397
AT4G34350_at 12.0180136205407 11.9597720859581 12.2664247417849 12.0944759298012 12.0037797147077 11.7426039161221 13.1428307692261 12.8590564374396 12.9061826041111 12.9641201398972 13.0054439874165 12.8354267786129 12.6786064931919 12.8066016664731 12.4625323607862 12.9806158534608 12.8486207924064 12.7400259469753 12.8505597343362 0.0897660836720313 0.087509668822921 0.0898444066310223 0.0870284213883845 0.086902775909999 0.089065827845023 0.0878254856451402 0.086658250741858 0.0947694333930973 0.0864831934428481 0.0889233610097674 0.0864831934428481 0.0865194267274887 0.0962106356046 0.0968229181900653 0.0864831934428481 0.0879709464898733 0.0908948400178325 0.0876244906951672 4 4|0 -|/ 16428845 16429670 16429200.3 16428484 16431118 - gene protein_coding_gene FALSE TRUE AT4G34350.1 CLB6 (CHLOROPLAST BIOGENESIS 6); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase Arabidopsis ISPH is involved in the plastid nonmevalonate pathway of isoprenoid biosynthesis. It was shown to complement the lethal phenotype of E. coli ispH mutant and is therefore most likely encodes a protein with 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity involved in the last step of mevalonate-independent isopentenyl biosynthesis. Mutant has Albino seedling. similar to IPP/DMAPP synthase [Stevia rebaudiana] (GB:ABB88836.2); similar to LYTB-like protein precursor [Adonis palaestina] (GB:AAG21984.1); similar to LYTB-like protein precursor-like [Solanum tuberosum] (GB:ABB55395.1); contains InterPro domain LytB protein; (InterPro:IPR003451) -0.290158538609976 -3.42676958115047 0.0083623154579468 1 4.49105863942353 25.1117138491293 -0.290158538609976 0.0737665960064426
AT1G15390_at 5.99979332830967 6.3938435320858 5.68511246081464 5.87116113258301 5.22907996353496 6.05815581581943 6.18524800642429 6.81866650791706 6.88000551264675 6.9525863218052 6.22296692301151 6.45471457350423 6.46104954226799 6.47790120090857 6.9644885051119 6.51871632361221 6.59145336952553 6.49087858402704 6.92542467232895 0.194080186050229 0.194110499508005 0.194883020405419 0.18720160091626 0.201669859596437 0.194005449513932 0.194813211431794 0.197516979042143 0.201341763803913 0.18720160091626 0.195164183481902 0.189360912154491 0.193379608701698 0.192659558625723 0.204212973380814 0.197571446355685 0.192313153646201 0.191346216595791 0.194642807656774 1 1|0 +|/ 5294890 5295587 5295282.7 5294624 5295792 + gene protein_coding_gene FALSE TRUE AT1G15390.1 PDF1A (PEPTIDE DEFORMYLASE 1A); peptide deformylase encodes a peptide deformylase-like protein. Removes N-formyl groups, a prerequisite for the action of methionine aminopeptidase during protein synthesis. Targeted to mitochondria. Requires Zn for catalysis. Identical to Peptide deformylase, mitochondrial precursor (EC 3.5.1.88) (PDF) (Polypeptide deformylase) (PDF1A) [Arabidopsis Thaliana] (GB:Q9FV53;GB:Q9XI30); similar to PDF1B (PEPTIDE DEFORMYLASE 1B), peptide deformylase [Arabidopsis thaliana] (TAIR:AT5G14660.2); similar to Peptide deformylase, mitochondrial precursor (PDF) (Polypeptide deformylase) (GB:Q9FUZ0); contains InterPro domain Formylmethionine deformylase; (InterPro:IPR000181) -0.517539104171853 -3.42657570440290 0.00836477824648634 1 4.4907910580131 12.7511875751060 -0.517539104171853 0.195672368730775
AT1G75270_at 6.71591699789521 7.19424451817423 6.3313308361499 7.10006001520742 5.70670509892764 5.93168647479819 7.26966746589815 7.53507576745952 4.23281954262391 4.72930036754962 4.13864548500986 4.20599149370585 4.40033336587572 4.23463099535483 4.31883714736684 4.88992359399037 5.21835748921734 4.32409867186223 4.45821966376548 0.258803263436138 0.254779496758089 0.274350409169407 0.261916075742670 0.255148147349429 0.259299301826987 0.256236593311758 0.258084357540348 0.269078298239048 0.256413255270684 0.255187740914534 0.251842863960164 0.258166132700549 0.259403965068821 0.264578709577803 0.256054027867003 0.256826615087882 0.251842863960164 0.259312842288586 1 0|1 /|- 28253983 28254656 28254255 28253736 28255011 - gene protein_coding_gene FALSE TRUE AT1G75270.1 DHAR2; glutathione dehydrogenase (ascorbate) similar to DHAR1 (DEHYDROASCORBATE REDUCTASE), glutathione dehydrogenase (ascorbate) [Arabidopsis thaliana] (TAIR:AT1G19570.1); similar to dehydroascorbate reductase [Nicotiana tabacum] (GB:AAL71857.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.459187412717222 -3.42294865339777 0.00841099320140684 1 4.48578423043493 11.1929852992859 -0.459187412717222 0.167854099160362
AT3G04400_at 11.7688722472700 11.9432888715637 11.3240152348698 11.5639348895443 11.4537356338853 11.5983570417037 11.5361415727469 11.8318420726999 11.7872933846433 11.7515702951744 11.5440704407185 11.6855990421472 11.5829632117753 11.4683788549644 11.6489309047880 11.2263145289808 11.3545605020870 11.2514273288847 11.7801448354295 0.0763624213598367 0.0721010254816704 0.075330208400312 0.0721952081850201 0.0741855534758295 0.0763445230986602 0.0772781955757674 0.0770482276446197 0.0797315910647678 0.0723754681247051 0.0761957004047794 0.0721897571645885 0.0718934777015344 0.0739106666714837 0.0753238733262878 0.0718934777015344 0.0761826985524324 0.0756000024552802 0.0721542204895079 3 3|0 +|/ 1167619 1168290 1167884.4 1167282 1168665 + gene protein_coding_gene FALSE TRUE AT3G04400.1 EMB2171 (EMBRYO DEFECTIVE 2171); structural constituent of ribosome Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G04480.1); similar to 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana] (TAIR:AT2G33370.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) -0.293873863845921 -3.42119649408239 0.00843341498528823 1 4.48336491071077 23.2491651656399 -0.293873863845921 0.0766803510185106
AT1G21560_at 6.19627098640945 6.39187841277709 5.53277862591885 5.19750416350239 6.97323014247765 6.47625770872262 7.24724504773028 6.99686845224233 6.11718453799193 6.53388579763948 6.27958495567279 6.72517535166277 6.1016534247842 5.69645108121016 6.67332460739557 6.4341898878969 6.76809201058629 6.2763575365921 6.63436744564506 0.206628397511954 0.202117412399193 0.206966471515626 0.205740904582754 0.202160312914196 0.203018069138695 0.203377679651487 0.198721006329523 0.202783633759494 0.200239001636907 0.203724287655262 0.20289741825601 0.209849057540453 0.216942965653014 0.212086950221707 0.198572513595095 0.208230724824241 0.203021113317977 0.201871240604935 1 1 + 7555904 7556736 7556330.273 7554829 7557014 + gene protein_coding_gene FALSE TRUE AT1G21560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01170.1); similar to Os04g0539100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053436.1); similar to Os05g0423200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055589.1); similar to Os04g0221000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052267.1) -0.361124359042402 -3.42090672462788 0.00843712912510857 1 4.48296476862454 12.7754206261729 -0.361124359042402 0.117414913825179
AT2G36740_at 5.59110413696024 5.78009234331389 5.10660855799069 4.93099147111733 5.73260692795318 5.41652813873233 5.33715907768801 5.16591912329959 4.95823710506128 4.94927573807431 4.76008304553818 4.94682171353767 4.24244337419835 4.74955923329302 4.3761218688626 4.81319265770144 5.08729269256993 4.50035358346756 5.39198436352361 0.225360662434627 0.215949967415976 0.223942655211405 0.213574335783474 0.221512630976929 0.220223618762711 0.218387078273245 0.215559481972936 0.235178405436103 0.224680080355425 0.217577787739365 0.220713662190351 0.217455482571658 0.212572847030873 0.223131234799398 0.21295381323493 0.216461514967749 0.225512237523007 0.212572847030873 2 2|0 -|/ 15414171 15415305 15414698.8 15413769 15416914 - gene protein_coding_gene FALSE TRUE AT2G36740.1 DNA binding similar to DRP1 protein [Triticum tur (GB:CAF22032.1); contains InterPro domain YL1 nuclear; (InterPro:IPR008895); contains InterPro domain YL1 nuclear, C-terminal; (InterPro:IPR013272) -0.293616888720348 -3.42002299908753 0.00844846697461965 1 4.48174436601627 10.2747841838148 -0.293616888720348 0.0765728904963775
AT3G25140_at 9.09541027695319 9.34564662210357 8.62920266017145 8.72366196546282 9.1519273257674 8.8188480344831 9.64998952754036 9.77814458556893 9.49132663010002 9.40184762329172 9.69155035905273 9.70503589549083 9.42786596223838 9.40139880172356 9.68887879260284 9.52370938812635 9.1000952412149 9.36636285277068 9.4284552251742 0.118898878874761 0.113311274686976 0.124894910724839 0.125815904705453 0.109447690650578 0.127082080239654 0.113868335817453 0.109351123945409 0.117494872783961 0.114150674102186 0.114876053920786 0.119190404029972 0.112178604778612 0.119944046201514 0.120930865988079 0.114820567625670 0.127007678163702 0.116370202550677 0.111788153112046 3 3 + 9156106 9156625 9156426.636 9154718 9156852 + gene protein_coding_gene FALSE TRUE AT3G25140.1 QUA1 (QUASIMODO1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Quasimodo1, encodes a glycosyltransferase, involved in homogalacturonan biosynthesis; mutant shows cell adhesion defect and lower wall uronic acid content. Identical to Glycosyltransferase QUASIMODO1 (EC 2.4.1.-) (QUA1) [Arabidopsis Thaliana] (GB:Q9LSG3); similar to GAUT9 (Galacturonosyltransferase 9), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G02350.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96860.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE89660.1); similar to putative glycosyl transferase [Oryza sativa (japonica cultivar-group)] (GB:BAD23465.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.294409377219883 -3.41895055915643 0.00846224749941758 1 4.48026321674016 18.6134315353436 -0.294409377219883 0.0771805024268705
AT4G25640_at 9.16785961911019 9.19730276873184 9.57330805583213 9.61455196806908 9.58148427581683 9.23429537472684 9.49534612263778 9.36651407813081 8.46953567900781 8.83268375555653 8.73357367346202 9.00215027579707 9.26500277618115 9.09086903255186 8.12185750799858 9.627854563529 9.26057557865308 8.7254410205665 8.55440546939382 0.139715380541928 0.131209991913091 0.143692980348660 0.131491388871110 0.133273487883861 0.13772461402728 0.132549416462056 0.132233985209606 0.179850508849734 0.140426501774862 0.140268922195427 0.139566245512363 0.131678356853317 0.150787659369063 0.156813822129765 0.131209991913091 0.145897663276559 0.143070634965079 0.136430527707168 4 0|4 /|- 13077302 13077700 13077537.4 13076724 13079061 - gene protein_coding_gene FALSE TRUE AT4G25640.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT4G00350.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE85324.1); similar to putative anthocyanin permease [Lycopersicon esculentum] (GB:AAQ55183.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.276847428532459 3.4153244611961 0.00850901725185292 1 4.47525409445387 18.2024780436712 0.276847428532459 0.0646830526453068
AT2G39500_at 4.78811834246611 5.07290835463505 5.16536804943212 5.10042216088179 5.23885958492062 4.99925757249582 5.02274682659604 5.0363625258898 4.56093418056128 4.64920593438835 5.03655088818209 5.14841327930785 5.13497391075047 5.10853755235153 5.26803934827768 5.12323172680943 4.96069752095736 4.69454365155377 4.73927905537242 0.205645723680013 0.206946075237888 0.214577310569570 0.215905368494355 0.210718257342415 0.210529654762851 0.209961268698491 0.205890053962867 0.20513244573468 0.211398576721348 0.206136361591478 0.210412119902626 0.209645452054816 0.204526633028458 0.214354318319751 0.204526633028458 0.206426444367981 0.215105842023949 0.206481540060737 2 2|0 +|/ 16496172 16496424 16496284.444 16496151 16496666 + gene protein_coding_gene FALSE TRUE AT2G39500.1 similar to Os01g0974800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045558.1) 0.277754962101130 3.41463767944269 0.00851790602982192 1 4.47430517564039 9.90759536460523 0.277754962101130 0.0654224066803212
AT1G16460_at 9.34727797673741 9.3801689880780 9.66158599419418 9.625524193355 10.1573856583603 9.8837713257474 9.36136013975622 9.16753462745577 9.34862592010983 9.30921007377752 9.456881070009 9.06887268320824 9.15947547176337 9.47935116593135 9.41606505405593 9.4343311552959 9.32031038866398 9.21667455616256 9.2381273615458 0.113423242490803 0.103563828152309 0.109712394809664 0.110828165778661 0.110608077385827 0.112714313483437 0.109424819591880 0.104726568732054 0.112718678312752 0.108738280615443 0.104366042199426 0.109424137225850 0.110230462891525 0.109245591852768 0.103913078332729 0.105362587423595 0.106038869049942 0.112023341792710 0.107959566103859 1 1|0 -|/ 5619858 5620899 5620377.8 5619576 5622657 - gene protein_coding_gene FALSE TRUE AT1G16460.1|AT1G16460.2|AT1G16460.3 ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2); thiosulfate sulfurtransferase encodes a cytoplasmic thiosulfate:cyanide sulfurtransferase, activity of which increased the rhodanese activity of transgenic yeast. Can also act as a mercaptopyruvate sulfurtransferase. similar to ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G79230.3); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307)|similar to ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1), thiosulfate sulfurtransferase [Arabidopsis thaliana] (TAIR:AT1G79230.1); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307) 0.269161050616303 3.41400398403283 0.00852611639847076 1 4.47342955127244 18.8819009354342 0.269161050616303 0.0586385722977551
AT1G78620_at 8.4914430940533 8.51735272161705 8.37468407241808 8.70848819021062 8.70144237000612 7.97715848405542 8.01876136276553 8.1483395221393 8.3081843058152 7.3875898115502 8.01138767373545 8.36485337605872 7.91461019519655 8.52092823376222 8.23128368403917 8.20356860915961 8.03408582578206 8.67286048431222 7.0630780809838 0.171472435567134 0.171472435567134 0.181426796947998 0.181952419265456 0.17387433961797 0.188563952782132 0.180550672196975 0.182733607830543 0.196528425351275 0.184697472974005 0.182311291791971 0.176709589169622 0.174451588010592 0.193259922616511 0.186653537174136 0.180417841625603 0.19664235536791 0.171472435567134 0.205480179609712 1 0|1 /|- 29579192 29579777 29579608.625 29577764 29580687 - gene protein_coding_gene FALSE TRUE AT1G78620.1|AT1G78620.2 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G19930.1); similar to hypothetical protein tlr2384 [Thermosynechococcus elongatus BP-1] (GB:NP_683174.1); similar to Os01g0729100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044132.1); contains InterPro domain Protein of unknown function DUF92, transmembrane; (InterPro:IPR002794)|similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53099.1); similar to hypothetical protein tlr2384 [Thermosynechococcus elongatus BP-1] (GB:NP_683174.1); similar to Os01g0729100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044132.1); contains InterPro domain Protein of unknown function DUF92, transmembrane; (InterPro:IPR002794) 0.402191149084058 3.41155685009633 0.00855790054607519 1 4.47004767377538 16.2824493903443 0.402191149084058 0.139893492446954
AT3G26710_at 8.81793038239031 8.96550972626038 8.65592799046178 8.33273685007431 9.31367045750058 8.37896393605028 10.1750995550862 10.1186688785214 9.6962792157837 9.65214886165678 9.5991756573342 9.82718126217586 9.33210455591166 9.56471592545342 9.92535195328556 9.62124728214594 8.74384642321057 9.43637421487807 9.4361223721537 0.157345430765274 0.146862452174360 0.163160930696399 0.156981875896012 0.148782947073148 0.169834015690403 0.147376378219323 0.144069451492709 0.152502065822484 0.144619886731315 0.145025641224801 0.146110488802247 0.145476960410177 0.148834390915825 0.145514905452236 0.144069451492709 0.161527870967112 0.148428346069170 0.145716123311653 3 3|0 +|/ 9815011 9815498 9815217 9814610 9815987 + gene protein_coding_gene FALSE TRUE AT3G26710.1 similar to Os11g0526200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067997.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53542.1) -0.468788908804069 -3.41133075935123 0.00856084336970234 1 4.46973518285576 18.6453633766252 -0.468788908804069 0.173322075723456
AT3G06730_at 6.06420665941908 6.31771769862285 5.54776901225213 5.82860992032187 6.82601984397244 5.68035123061576 7.20579153386284 7.21990917217588 5.61373202368211 6.28213790036782 5.00544043834224 5.65977115900279 5.7579553300982 5.50258766905092 6.02714780269154 6.4182542455268 5.98142617396201 5.43999098045843 6.33912973331582 0.237420312789952 0.231776461637467 0.238932221540348 0.227587379383950 0.232354541615612 0.23503152924951 0.232157791498030 0.231006340543118 0.245420918660087 0.234864291186043 0.232276425632164 0.231579684263879 0.230882479229524 0.233434475151900 0.239622779261232 0.227587379383950 0.242273321061291 0.232420553821797 0.232364479364812 3 3|0 +|/ 2124292 2125801 2125043.444 2124223 2126148 + gene protein_coding_gene FALSE TRUE AT3G06730.1 thioredoxin family protein similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to thioredoxin protein [Nicotiana benthamiana] (GB:AAS80320.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.542740129229957 -3.40931449664131 0.00858713442305176 1 4.46694811605775 12.2374993559121 -0.542740129229957 0.208808602258572
AT3G16720_at 5.64320617395562 5.78069882670534 5.61270108771341 6.40601450275633 6.13285315416121 5.4099780093688 4.65558551988563 4.81671329606334 4.4858266142099 3.54891535463051 4.08350826292233 3.87389309751915 4.32304877798494 4.42144562125922 4.31927684055463 3.95333805393547 3.83041896341293 4.0656423439167 3.28143395402216 0.254715894485132 0.252515039305445 0.263049872858001 0.261012484869351 0.255123879607911 0.251769607249722 0.245833200085635 0.255938426479139 0.249215083090503 0.246758173513051 0.251394741353062 0.257524070908394 0.249869362061413 0.249300699131218 0.249104587391568 0.245833200085635 0.255408564577157 0.253909595259597 0.246185990243506 3 3 + 5693201 5693726 5693512 5692744 5694133 + gene protein_coding_gene FALSE TRUE AT3G16720.1 ATL2 (Arabidopsis T?xicos en Levadura 2); protein binding / zinc ion binding RING-H2 protein induced after exposure to chitin or inactivated crude cellulase preparations. Identical to RING-H2 finger protein ATL3F (RING-H2 finger protein ATL2) (ATL3F) [Arabidopsis Thaliana] (GB:Q8L9T5;GB:O24008;GB:Q9LUR1); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G15975.1); similar to RING-H2 subgroup RHE protein [Populus alba x Populus tremula] (GB:AAW33880.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.501549294290718 3.40892789485246 0.00859218521631615 1 4.46641365878646 9.4976588893974 0.501549294290718 0.189315873274608
AT1G71500_at 11.1517887735004 11.3551473733537 11.1963709963568 11.0846308488002 10.8252932621588 10.9981280609505 11.8329889960441 12.0594059145076 11.9970234332564 11.9375444998377 12.1674071251071 12.0871498015311 11.8842907785045 11.9778997427156 11.7962148332115 12.0828789603818 11.6955327986696 11.8717884066285 11.8295398012129 0.0806193993780236 0.0795616748950908 0.0799459482260497 0.083762904535066 0.080356838806242 0.0783911167889872 0.0799868886368236 0.079336513644645 0.0813888667710556 0.0813935272852814 0.0810819457955886 0.0794851058995417 0.0798363971863038 0.082551817490852 0.0823572977512151 0.0782071142997707 0.0790847790506157 0.0793337900925245 0.0816298456631802 1 1|0 +|/ 26940099 26940959 26940534.3 26939692 26941269 + gene protein_coding_gene FALSE TRUE AT1G71500.1 Rieske (2Fe-2S) domain-containing protein similar to Rieske [2Fe-2S] domain, putative [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL51406.1); similar to Os11g0242400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067589.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.274850455605091 -3.40822478385289 0.00860137908631274 1 4.4654415940988 23.2463515535154 -0.274850455605091 0.0635789432501758
AT4G26000_at 5.18899657112255 4.67983068224075 4.44438337120068 4.17504819697094 5.11158175786605 4.82636864789983 4.46646542992864 4.27238429817223 4.12944874303014 4.35793164309874 5.23965834889051 5.06501089432765 5.33643989118766 5.0970851103161 5.28473739068261 5.10578727800944 4.96226071349826 4.00707849803819 4.36685224790513 0.235324370961832 0.238170919970438 0.240686747182777 0.240292704834373 0.241594079532031 0.235324370961832 0.238442565545786 0.241789284467960 0.254758257193710 0.235324370961832 0.235524667181928 0.235324370961832 0.237561372052600 0.238658618016209 0.243187720818551 0.238430444880814 0.257188339119630 0.242393110357574 0.243577591981595 4 4 + 13198686 13199421 13199152 13197255 13199845 + gene protein_coding_gene FALSE TRUE AT4G26000.1 PEP (PEPPER); nucleic acid binding Encodes a novel Arabidopsis gene encoding a polypeptide with K-homology (KH) RNA-binding modules, which acts on vegetative growth and pistil development. Genetic studies suggest that PEP interacts with element(s) of the CLAVATA signaling pathway. similar to FLK (FLOWERING LOCUS KH DOMAIN), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G04610.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE84576.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.357469651196234 3.40714087030936 0.00861557260981789 1 4.46394293723108 9.29413310790694 0.357469651196234 0.116192430146925
AT3G45210_at 8.65115037891002 8.99470351042272 9.5929140079727 9.72142721021252 9.73647397986809 9.62283761210197 10.1993379392552 10.0247564164695 8.82221632024692 9.36602635368903 9.63734179642274 9.4685335809482 9.2584558417924 9.5572793547807 9.1509360631732 9.66724858085121 9.97075408518345 9.47966721140986 9.261528908418 0.0972309444456861 0.0937725557625673 0.0937725557625673 0.0937725557625673 0.0950633933172544 0.0949514015640638 0.0950612649625796 0.103102131596904 0.108923234166052 0.0979440527506442 0.095241477021513 0.0952295732968346 0.097194821285217 0.096836934412157 0.0956598614599704 0.0942041883046775 0.0962905020083343 0.103095517633900 0.0981386391336845 3 3 - 16568547 16568842 16568725.818 16568258 16568955 - gene protein_coding_gene FALSE TRUE AT3G45210.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60680.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.287389672405011 3.40684352107064 0.00861947061518575 1 4.46353178520978 18.9048005944540 0.287389672405011 0.0729987833310889
AT4G24190_at 12.2731410260898 12.3566585714777 12.5921609861562 12.6343573176742 11.8283680408967 11.7389050036588 10.7374546976625 10.7125310959687 10.9816173933492 10.7016528029151 10.5768333290108 10.962320009893 10.4730706812967 10.5121703973925 10.8985148395018 10.5403206966808 10.3231581361612 10.7492951120814 10.8207468151430 0.0720391231316985 0.0710265083721192 0.0748646736882353 0.0738382948917697 0.0710265083721192 0.075790710261132 0.0740300381726028 0.0761781607514933 0.0830462079134875 0.0713529776845936 0.0720017377766047 0.0723156050347294 0.0722602803758294 0.0783724529878185 0.075887353972997 0.0722353225326566 0.0775862268441318 0.0723922913372178 0.0710265083721192 4 4 - 12551940 12552445 12552188.182 12551727 12555919 - gene protein_coding_gene FALSE TRUE AT4G24190.1|AT4G24190.2 SHD (SHEPHERD); ATP binding encodes an ortholog of GRP94, an ER-resident HSP90-like protein and is involved in regulation of meristem size and organization. Single and double mutant analyses suggest that SHD may be required for the correct folding and/or complex formation of CLV proteins. Lines carrying recessive mutations in this locus exhibits expanded shoot meristems, disorganized root meristems, and defective pollen tube elongation. Transcript is detected in all tissues examined and is not induced by heat. Endoplasmin supports the protein secretory pathway and has a role in proliferating tissues. Identical to Endoplasmin homolog precursor (GRP94 homolog) (Protein SHEPHERD) (HSP90-like protein 7) (SHD) [Arabidopsis Thaliana] (GB:Q9STX5;GB:O22972;GB:Q56Y38;GB:Q8VY71); similar to heat shock protein 81-4 (HSP81-4) [Arabidopsis thaliana] (TAIR:AT5G56000.1); similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8), ATP binding [Arabidopsis thaliana] (TAIR:AT5G56030.1); similar to Endoplasmin homolog precursor (GRP94 homolog) (GB:P35016); similar to heat shock protein 90 [Oryza sativa] (GB:AAL79732.1); similar to Grp94 [Xerophyta viscosa] (GB:AAN34791.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594)|Identical to Endoplasmin homolog precursor (GRP94 homolog) (Protein SHEPHERD) (HSP90-like protein 7) (SHD) [Arabidopsis Thaliana] (GB:Q9STX5;GB:O22972;GB:Q56Y38;GB:Q8VY71); similar to heat shock protein 81-4 (HSP81-4) [Arabidopsis thaliana] (TAIR:AT5G56000.1); similar to HSP81-1 (HEAT SHOCK PROTEIN 81-1), ATP binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G52640.1); similar to HSP81-2 (EARLY-RESPONSIVE TO DEHYDRATION 8), ATP binding [Arabidopsis thaliana] (TAIR:AT5G56030.1); similar to Endoplasmin homolog precursor (GRP94 homolog) (GB:P35016); similar to heat shock protein 90 [Oryza sativa] (GB:AAL79732.1); similar to Grp94 [Xerophyta viscosa] (GB:AAN34791.1); contains InterPro domain Penicillin-binding protein, transpeptidase fold; (InterPro:IPR012338); contains InterPro domain Heat shock protein Hsp90; (InterPro:IPR001404); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) 0.236644776206664 3.40640440892509 0.0086252304102226 1 4.4629245932847 22.5912634611421 0.236644776206664 0.0228147039429565
AT1G18030_at 5.70010619113438 4.94486236677714 5.07820288809798 5.07434080785689 6.09871972031583 5.74603522790344 5.98691315596757 5.46128299874925 5.31072672079925 5.73707134466171 5.21110140409838 4.79454756570318 4.82401957263458 4.9087011814858 4.80745566166195 4.733417075342 4.1089063868108 4.65602849365386 5.91911318865979 0.205428411573491 0.206495608659861 0.208202749289146 0.207132660114924 0.205092926112621 0.211210902728636 0.209707143171583 0.202042901449935 0.206897984657646 0.205986633416453 0.207021123620173 0.209259225915138 0.203911407983729 0.210270033414513 0.208632718914260 0.202042901449935 0.216388649028575 0.212105690376706 0.207956127008623 1 1|0 +|/ 6205435 6206575 6205816 6204336 6206981 + gene protein_coding_gene FALSE TRUE AT1G18030.1|AT1G18030.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT2G25620.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_422661.2); similar to Os09g0314400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062840.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G51470.1); similar to integrin-linked kinase-associated serine/threonine phosphatase 2C [Mus musculus] (GB:NP_075832.1); similar to PREDICTED: hypothetical protein [Gallus gallus] (GB:XP_422661.2); similar to Os09g0314400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062840.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.462040717073324 -3.40361931460040 0.0086618566675795 1 4.45907286375951 10.7168875457907 -0.462040717073324 0.170534072058984
AT4G00750_at 7.5631145475508 7.73868333090088 7.92166622926055 7.90352621013567 8.3300148962201 7.8797591385926 9.01170383992988 8.78864154977215 8.34976698637367 8.37183016348909 7.81719957618636 7.51540977481078 8.04329176309387 8.15141245267103 7.68096855804603 8.42801891411523 8.13889471189047 7.74537106282082 8.19412451196736 0.149493228097928 0.150425064858496 0.149194564013778 0.148543813853231 0.158712039415164 0.177762224142183 0.158300520280099 0.147021108029735 0.162903158301214 0.147961239787666 0.157261787779034 0.152466236454042 0.148318938916974 0.156669390475549 0.148784374728277 0.151462084373779 0.161614654358519 0.158554550280498 0.146087788018997 4 4 + 316923 317477 317100.182 314353 317675 + gene protein_coding_gene FALSE TRUE AT4G00750.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G45750.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD67956.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE86303.1); similar to Generic methyltransferase [Medicago truncatula] (GB:ABE88265.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.315981950362620 -3.40265449912775 0.00867458290720367 1 4.45773831013789 16.2647944206192 -0.315981950362620 0.09216529593195
AT3G51000_at 9.1179401645589 9.2801518892484 9.66746501659134 9.49738234194454 9.67057209391158 9.26164070231624 9.17467162251941 8.79242871478591 8.39081300084863 8.48162883651516 7.10629774273204 6.94955928836415 7.36379337678452 7.09384243148616 6.96649484726348 7.57806375211275 7.98022005161923 7.74974114762418 8.49599684370747 0.184470120046562 0.181783974383342 0.191733213271503 0.185157754811831 0.18743926142875 0.183227122368163 0.189201671382065 0.185127470123083 0.183105693227923 0.185622992347697 0.188956295502722 0.188698758062317 0.186180656471127 0.195789655130163 0.185113621936187 0.184281629415091 0.199911457328149 0.186282545480828 0.190327112782421 3 3 - 18956304 18956986 18956642.727 18956006 18957602 - gene protein_coding_gene FALSE TRUE AT3G51000.1 epoxide hydrolase, putative similar to epoxide hydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G05600.1); similar to soluble epoxide hydrolase [Citrus jambhiri] (GB:BAD13534.1); similar to Os12g0636400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067364.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639) -0.337338853181336 -3.40157507558191 0.00868884418348053 1 4.4562450861046 17.2101054716206 -0.337338853181336 0.105062180979881
AT1G08520_at 10.4345155354145 10.3365048414646 9.74853686554143 9.68519533556927 10.2966167541147 9.9698774282806 10.4637676986507 10.3664270541299 11.0504853025788 10.7785982283368 10.9085633674298 11.0953945284051 10.5453689932024 10.7586720089916 11.0730126200095 10.7221323241578 10.3487976348097 10.8779252065845 10.7538233787047 0.0883120788226607 0.0859862181826588 0.0949920019711025 0.0892531293489322 0.0902157835180412 0.0928188012484737 0.0895794557062937 0.0865521672683375 0.0964358897390023 0.0922249023216157 0.0863494969713785 0.0873502906462854 0.0948989646620626 0.0887234531396617 0.089941085288615 0.0859862181826588 0.0980963219711834 0.0908512852931319 0.0876177204667883 1 1|0 +|/ 2699874 2700782 2700318.4 2696415 2700962 + gene protein_coding_gene FALSE TRUE AT1G08520.1 CHLD/PDE166 (PIGMENT DEFECTIVE 166); ATP binding / magnesium chelatase/ nucleoside-triphosphatase/ nucleotide binding Identical to Magnesium-chelatase subunit chlD, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (CHLD) [Arabidopsis Thaliana] (GB:Q9SJE1;GB:Q9SWY5); similar to CHLI1 (CHLORINA 42), magnesium chelatase [Arabidopsis thaliana] (TAIR:AT4G18480.1); similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (GB:O22437); similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (GB:O24133); similar to Magnesium-chelatase subunit chlD, chloroplast precursor (Mg-protoporphyrin IX chelatase) (Mg-chelatase subunit D) (GB:Q9SJE1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Magnesium chelatase ATPase subunit D; (InterPro:IPR011776); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Magnesium chelatase, ChlI subunit; (InterPro:IPR000523); contains InterPro domain Magnesium chelatase, subunit ChlD; (InterPro:IPR012174) -0.272491410481541 -3.39812248034341 0.00873462550410223 1 4.45146792156362 20.9887813418069 -0.272491410481541 0.0623602267743438
AT2G07050_at 9.12715736319081 9.22869801693005 8.8945966213527 8.89381961350857 9.06777883931065 8.96985387583288 9.63067783614268 9.35988103220838 9.75995346732578 9.50949448021336 9.66599679296962 9.571811087837 9.32997315025164 9.49449246151846 9.56922218312553 9.37324228343486 9.33742686991743 9.48496514329717 9.59173166634684 0.113392000099354 0.106043408350109 0.113475326149718 0.111825872453146 0.107121500816144 0.122850377017156 0.106269910394472 0.107385264329979 0.110124030922415 0.105917096540270 0.112411519704248 0.108748523365823 0.110190091715075 0.112623884346386 0.110889021320843 0.110463284068436 0.1057491159405 0.116558380971341 0.110802511607328 2 2|0 +|/ 2929295 2930244 2929763.3 2924444 2930669 + gene protein_coding_gene FALSE TRUE AT2G07050.1 CAS1 (CYCLOARTENOL SYNTHASE 1) Involved in the biosynthesis of brassinosteroids. Catalyzes the reaction from epoxysqualene to cycloartenol. Identical to Cycloartenol synthase (EC 5.4.99.8) (2,3-epoxysqualene--cycloartenol cyclase) (CAS1) [Arabidopsis Thaliana] (GB:P38605;GB:P92967); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78950.1); similar to LAS1 (Lanosterol synthase 1), catalytic/ lyase [Arabidopsis thaliana] (TAIR:AT3G45130.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to cycloartenol synthase [Glycyrrhiza glabra] (GB:BAA76902.1); similar to cycloartenol synthase [Lotus japonicus] (GB:BAE53431.1); similar to cycloartenol synthase [Pisum sativum] (GB:BAA23533.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) -0.261046641350738 -3.39624911860589 0.00875957235668235 1 4.44887521455541 18.6959501253959 -0.261046641350738 0.0528401709894734
AT3G61890_at 7.1899910083619 7.93156475570873 9.22348109955905 9.34084236432308 8.96061287729697 8.4951314973404 9.12753114509353 9.20465748522266 6.06169778803899 7.6933650192157 6.14282112292903 6.69624371427352 8.12885253310401 6.85440775268002 6.13233838546133 7.99921465109384 9.0906124340789 7.28091329972307 7.48099425926458 0.232110283067175 0.234829030477730 0.228124226200716 0.235351699419382 0.234145969153664 0.23108844395786 0.231925714583588 0.227557843426395 0.259893901060065 0.232855091953163 0.232315300177141 0.231033408388331 0.230667399449080 0.239291218436057 0.243519356529866 0.227351854955402 0.23257174298732 0.244945894989295 0.233191932183551 3 3|0 -|/ 22925337 22926052 22925632.2 22925129 22926300 - gene protein_coding_gene FALSE TRUE AT3G61890.1 ATHB-12 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 1); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Loss of function mutant has abnormally shaped leaves and stems. Identical to Homeobox-leucine zipper protein ATHB-12 (Homeodomain transcription factor ATHB-12) (HD-ZIP protein ATHB-12) (ATHB-12) [Arabidopsis Thaliana] (GB:Q9M276;GB:O64893); similar to ATHB-7 (ARABIDOPSIS THALIANA HOMEOBOX 7), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46680.1); similar to Leucine zipper, homeobox-associated; Homeodomain-related [Medicago truncatula] (GB:ABE91214.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.426785329430688 3.39607345700989 0.0087619154160451 1 4.44863207824632 15.8689071168671 0.426785329430688 0.153456331850666
AT1G19920_at 7.83944787437524 8.08161894291105 7.59055719428887 7.73326618879096 7.80152905282014 7.06152611031871 9.1958847823605 9.09439610374318 8.33979283326885 8.68276735834263 8.80181416383227 9.13088949895963 8.2965064768189 8.70206263572423 8.76917266986518 8.55531317426036 8.31937276462482 8.75544154134113 8.3387336485945 0.169171745685779 0.151719696803085 0.171103181284341 0.161186956605565 0.153644580078974 0.172157422672055 0.156864497188839 0.163499685009491 0.153383940105176 0.153655284469233 0.148495292640511 0.153318555553954 0.155031913617590 0.153428328399093 0.157025589546706 0.149454569208037 0.173107125990331 0.150946355291970 0.154112903723483 1 1|0 -|/ 6915110 6915686 6915412.8 6914604 6916796 - gene protein_coding_gene FALSE TRUE AT1G19920.1 APS2 (ATP SULFURYLASE PRECURSOR) encodes a chloroplast form of ATP sulfurylase similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arabidopsis thaliana] (TAIR:AT5G43780.1); similar to APS1 (ATP sulfurylase 3) [Arabidopsis thaliana] (TAIR:AT3G22890.1); similar to ATP-sulfurylase [Medicago truncatula] (GB:ABE89666.1); similar to ATP-sulfurylase precursor [Brassica oleracea] (GB:AAB67995.1); similar to ATP sulfurylase precursor [Brassica oleracea var. botrytis] (GB:AAF13064.1); contains InterPro domain ATP-sulfurylase; (InterPro:IPR002650) -0.396780143508249 -3.39462047060951 0.00878132134690132 1 4.44662082268199 16.6098213957412 -0.396780143508249 0.138109872747974
AT1G21720_at 9.56598856313985 9.82222729438562 10.1139632367825 10.2256259169334 9.87645020489867 9.8249021997804 9.49444194889144 9.73248297079215 9.34544233864611 9.15764087610266 9.53215919936024 9.31867500672618 9.3859023090252 9.59113272014193 8.94465737237514 9.46138642729777 9.36882048703785 9.39704653877733 9.04439602240901 0.130516084670239 0.129015522614916 0.13301415730945 0.139663795455432 0.131900807315072 0.129288559720196 0.140347372988143 0.129015522614916 0.146694050921567 0.13928252794625 0.134247658529567 0.135585440274772 0.134525443228755 0.136556950917803 0.156362601398319 0.130405930376882 0.136611141526951 0.143733042220546 0.135272819737633 1 1 + 7626563 7627864 7626979.273 7626272 7628251 + gene protein_coding_gene FALSE TRUE AT1G21720.1 PBC1 (20S proteasome beta subunit C1); peptidase 20S proteasome beta subunit PBC1 truncated protein (PBC1) Identical to Proteasome subunit beta type 3-A (EC 3.4.25.1) (20S proteasome beta subunit C-1) (Proteasome component T) (PBC1) [Arabidopsis Thaliana] (GB:Q9XI05;GB:O23707;GB:Q8LEA7;GB:Q8VZC4); similar to PBC2 (20S proteasome beta subunit C 2), peptidase [Arabidopsis thaliana] (TAIR:AT1G77440.2); similar to 20S proteasome, A and B subunits [Medicago truncatula] (GB:ABE79860.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.274464811918289 3.39426017002755 0.00878614047417197 1 4.44612204493039 19.1107430852731 0.274464811918289 0.064158150430195
AT4G24200_at 5.09217184279287 4.94491264339973 4.7732902045556 5.11052473439174 5.29690536847752 5.55921833768128 4.69364407130422 4.9304713588057 4.72538730116063 3.71002216961938 4.46581993226929 4.64499221804758 5.15059099142414 5.17728238597544 4.20872896196976 4.70337822274614 4.44964205609805 4.17795070631280 4.38637843780487 0.224511984346789 0.217064981688078 0.224615246345510 0.217524808758823 0.218633533309869 0.233602251639997 0.221204755108259 0.219646078621552 0.226397097091733 0.233576818785366 0.225092963161412 0.225053667045307 0.23106068850248 0.221181426349065 0.232861829132933 0.217064981688078 0.224161187103298 0.238870575829012 0.217064981688078 4 4 - 12556985 12557354 12557181.556 12556666 12560954 - gene protein_coding_gene FALSE TRUE AT4G24200.1 similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48060.1); similar to Os06g0631300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058124.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38587.1); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990) 0.309026781847343 3.39388541486644 0.00879115588703277 1 4.44560323954159 9.4982560637846 0.309026781847343 0.088293103041024
AT1G11360_at 7.53627746674492 7.5253923087265 7.48529367059146 7.36395983138156 7.69284667880452 7.48506847424396 6.82478308558344 6.83236563288664 7.65794453974413 7.33399868150847 7.8149904626376 7.49580892534457 7.48714133763303 7.85631408955275 7.59287006333909 7.59437024066851 7.49673610426692 7.76010122114166 7.40668708607302 0.155925251635756 0.161247872994370 0.154171367346247 0.150540719990697 0.160221022962627 0.165870494552585 0.154895111535243 0.162069897797090 0.184864606534356 0.152868496390113 0.156101378184169 0.148990244551218 0.147723011349210 0.154439500350949 0.155611685198136 0.155959309309482 0.163250559297843 0.160470255255813 0.153609449096476 1 1 - 3822179 3822453 3822321.273 3821460 3823053 - gene protein_coding_gene FALSE TRUE AT1G11360.1|AT1G11360.2 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT4G27320.1); similar to Os07g0551400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059943.1); similar to CHP-rich zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC65369.1); similar to Os01g0783500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044454.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.249084496700576 3.38758103037733 0.00887598143700136 1 4.43687285717728 14.8949992226278 0.249084496700576 0.0417021039493433
AT3G04500_at 6.561968957263 6.53911035973153 6.57262816543032 6.56678234694513 6.57193982515346 6.40023025726719 6.7066614314366 6.43670606270751 5.87871883814338 5.63371867598503 6.70497927407794 6.4395840369647 6.10379069556941 6.50767015508595 6.53628309958889 6.50187944934545 6.16946227024325 6.15420087821151 5.97729430629603 0.200252574976942 0.192493330477226 0.194972700632612 0.193916114885232 0.192584848448857 0.195044943273654 0.196585872504128 0.197035441257648 0.200756470241183 0.198978400999934 0.192086744083009 0.193609962394728 0.194453651502963 0.203158808425563 0.193030134036738 0.190736847604606 0.196560421756407 0.200214108884259 0.196963649137752 3 0|3 /|- 1212485 1213229 1212910.222 1211768 1213861 - gene protein_coding_gene FALSE TRUE AT3G04500.1 RNA recognition motif (RRM)-containing protein similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to Os08g0567200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062547.1); similar to MGC79565 protein [Xenopus tropicalis] (GB:NP_001007900.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.263302035746054 3.3862335432014 0.00889422327580137 1 4.43500618512969 12.6543243453389 0.263302035746054 0.0555170489877064
AT2G26890_at 7.98294095425384 7.9358565138569 8.08732820032308 7.98136499519632 7.93144228062104 8.12907982157524 7.50120606443952 7.68575761798496 7.65165055358947 7.83327244743137 8.03594847837587 8.12582117411758 8.06633153499354 8.06398190637344 7.82271844183105 8.14937345313878 8.14323541529263 7.90204410250674 7.85047392124758 0.137634106239865 0.138521381867283 0.133555893475488 0.136807151700377 0.145578293981846 0.139274130678346 0.142606267194928 0.148213427070123 0.149456590471764 0.135224476850194 0.137330909558438 0.137955156064378 0.140317563032574 0.146183204862232 0.138897497924451 0.138968799325908 0.149223087216703 0.143818744934139 0.138755347512481 2 2|0 -|/ 11469460 11470430 11469824.778 11469145 11480919 - gene protein_coding_gene FALSE TRUE AT2G26890.1 GRV2 (KATAMARI2); binding / heat shock protein binding GRV2 has sequence similarity to the C. elegans protein RME-8 which is involved in endocytosis. grv2 mutants result in a reduction in gravitropic response in hypocotyls and shoots but do not affect root gravitropism. The mutants are defective in amyloplast sedimentation. similar to putative DnaJ domain containg protein, 3'-partial [Oryza sativa] (GB:AAL67579.1); similar to unknown protein [Oryza sativa] (GB:AAK00454.1); similar to DNAJ heat shock N-terminal domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66288.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.258039854683842 3.38447385285187 0.00891810475851274 1 4.43256814127094 15.8129457830738 0.258039854683842 0.050916028631732
AT4G37180_at 7.00630025609674 6.87366644495079 8.1100447814821 8.0800003187147 8.18532026805877 7.32893070822828 8.05237963820376 7.87996425921772 4.90398064236067 6.64598866177843 5.33363269313747 6.05229469329233 6.0973612374377 6.15915897272028 5.96409158987753 5.71419768498629 6.89587378513507 5.73739215091801 5.30693090283042 0.229364683390581 0.242178227617852 0.233682824560325 0.229509695934841 0.234308093644482 0.25087298061647 0.231624785873018 0.230674269927638 0.242381431071183 0.231217627506322 0.229583141931605 0.229318059517916 0.229318059517916 0.236068680481826 0.232552432512768 0.229318059517916 0.250730237822332 0.234357855607039 0.238313792261485 4 4|0 +|/ 17505336 17505933 17505655.2 17504558 17506361 + gene protein_coding_gene FALSE TRUE AT4G37180.1|AT4G37180.2 myb family transcription factor myb family transcription factor, contains Pfam domain, PF00249: Myb-like DNA-binding domain l; also isolated as a putative cytoskeletal protein in a yeast screen similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G03500.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os03g0764600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051369.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.424139992392648 3.38221230661267 0.00894889617882724 1 4.42943420121914 13.4961843776664 0.424139992392648 0.152996818756465
AT1G22510_at 6.65282142674328 6.77196992514385 6.5118667402145 6.46101370890162 6.48448699263208 6.6168137314154 5.17418969335333 4.87333457556646 4.8308881023016 4.4174995993914 4.49404135923674 4.48916741976751 4.4690506996582 4.26339603978658 4.82828426860728 4.30761162057245 4.09962764077983 4.33217859816107 4.31620017961442 0.212926972154995 0.207860925099647 0.207094891770138 0.207508543226282 0.207241571954779 0.214138417863083 0.207437721086986 0.214427484484995 0.225819580911869 0.208717713253676 0.205981926414157 0.206851413976799 0.208496277354087 0.226356542164023 0.206318889408621 0.205964237756706 0.233425378239415 0.216539580070169 0.211204618581606 1 1|0 -|/ 7951050 7952560 7952022.444 7950808 7952662 - gene protein_coding_gene FALSE TRUE AT1G22510.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G72175.1); similar to hypothetical protein LOC406612 [Danio rerio] (GB:NP_999915.1); similar to Os03g0839000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051839.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.269678400070620 3.38201959128936 0.00895152520092209 1 4.42916711579111 10.6592865990415 0.269678400070620 0.0611367038118722
AT1G63900_at 7.89793124521268 7.88393737297195 7.90187159814906 7.94397711289747 8.20242638572301 7.80628047300184 8.27439104503926 8.01837751089443 8.16665189932675 7.97144117213175 7.77629821774223 7.15996860139632 7.49664942389302 7.68695446233915 6.97464054427419 7.81316875237895 7.46875326801789 7.34817078591088 7.8828919194175 0.132326067175318 0.128277800765652 0.128726959089177 0.129885311689933 0.126433925249421 0.135780345952647 0.129562365402451 0.127058262673285 0.134747138017683 0.127382207265846 0.126192236223821 0.128444164225024 0.131391722672831 0.125336050309644 0.131389731098874 0.125946807569336 0.137719144266166 0.129993449766437 0.129708454074791 1 1|0 +|/ 23720727 23722725 23721888.824 23720382 23722964 + gene protein_coding_gene FALSE TRUE AT1G63900.1 zinc finger (C3HC4-type RING finger) family protein similar to ZCF61, protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G59560.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE86663.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.298219945525662 -3.38116059598058 0.00896325349317472 1 4.42797657137993 15.7274343449626 -0.298219945525662 0.0819854057075895
AT2G31260_at 5.20758540419752 5.51295677842047 5.40541070996157 5.45829338096721 5.43868995303369 5.5858415181527 4.69829874165255 5.26969786467544 5.15300056154962 4.68648201029596 5.07418691047694 5.27201084278245 5.14862082084325 5.26200974969578 5.3030278715542 5.04169380050327 5.54772398701598 5.33492900695468 4.68617007262469 0.213638864109090 0.213294095132442 0.215955666916679 0.215788493466847 0.215419955375684 0.214700898348342 0.209039573749407 0.208469593235015 0.210491032694283 0.213225837897216 0.212239364818534 0.213792562328346 0.213137350793094 0.211990647162581 0.225380776286415 0.21366228990284 0.214244408139882 0.208469593235015 0.213095199874825 2 2 - 13329371 13329936 13329705.455 13329098 13334477 - gene protein_coding_gene FALSE TRUE AT2G31260.1 APG9 (AUTOPHAGY 9) Involved in autophagy, the process of vacuolar bulk degradation of cytoplasmic components. Mutant shows accelerated bolting and senescence. similar to Autophagy protein Apg9 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65924.1); similar to autophagy protein 9 [Glycine max] (GB:CAJ30206.1); similar to autophagy protein 9 [Saccharum officinarum] (GB:CAJ30211.1); contains InterPro domain Autophagy protein Apg9; (InterPro:IPR007241) 0.353032676098596 3.37934515153232 0.00898809384503096 1 4.42546010704833 10.3670515881585 0.353032676098596 0.115337888250221
AT4G20360_at 12.6194584733479 12.8141425968935 12.4743442494515 12.5328964003495 12.4202201243473 12.4479316625497 13.1160330436017 13.3499621261904 13.2860107490526 13.5813995461486 13.4046819579758 13.4789529506125 13.4456522011246 13.3708408206405 13.5752472200540 13.4871165478065 13.1085227614136 13.4251993805189 13.4155541432305 0.0585997388851169 0.0565068381494785 0.0565068381494785 0.0585206112119013 0.0576152908212717 0.0626728617612671 0.0576699385101995 0.0565847083169203 0.0602847326493273 0.0565068381494785 0.0577106141373462 0.0577720284027595 0.0566438979756699 0.057659243160925 0.058335732425255 0.0565068381494785 0.0653449484004287 0.0591855853445413 0.0565068381494785 4 4 + 10990899 10991451 10991159.091 10989963 10991720 + gene protein_coding_gene FALSE TRUE AT4G20360.1 AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b); translation elongation factor Identical to Elongation factor Tu, chloroplast precursor (EF-Tu) (TUFA) [Arabidopsis Thaliana] (GB:P17745); similar to elongation factor Tu, putative / EF-Tu, putative [Arabidopsis thaliana] (TAIR:AT4G02930.1); similar to chloroplast translational elongation factor Tu [Pelargonium graveolens] (GB:AAK08141.1); similar to Elongation factor Tu, chloroplast precursor (EF-Tu) (GB:Q43467); similar to Elongation factor Tu, chloroplast precursor (EF-Tu) (GB:P46280); contains InterPro domain Translation elongation factor Tu; (InterPro:IPR004541); contains InterPro domain Elongation factor Tu, C-terminal; (InterPro:IPR004160); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Translation elongation factor, GTP-binding; (InterPro:IPR013004); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.260839516813072 -3.37894544147288 0.00899357270996257 1 4.42490599607033 26.1417143560059 -0.260839516813072 0.0538478175990046
AT4G11300_at 6.05083224966571 5.48529526447392 6.29072619240939 5.70190449877722 5.65226373729852 5.68056961491493 4.71378744436005 4.36759626447632 5.02122115812393 4.98884326118651 5.56441130046949 4.98581082036059 5.06032937551509 5.46003586462052 4.67593264810619 5.1563459169566 5.26685774683433 5.10274428932481 4.95089029708491 0.175377413405534 0.176220182937983 0.183253339559293 0.177397460390175 0.177430314426183 0.177922864728896 0.176517629780253 0.182720793490171 0.180421277382991 0.176920967751222 0.182507246594461 0.175819649254396 0.176101641916849 0.179699921818095 0.182680183848664 0.176581290508695 0.183551313926467 0.177173052586436 0.177243812270459 4 4 - 6872566 6872909 6872740.455 6872147 6873537 - gene protein_coding_gene FALSE TRUE AT4G11300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23530.1); similar to CAA303718.1 protein [Oryza sativa] (GB:CAB53491.1); similar to Os04g0688000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054336.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) 0.424530897457175 3.37681409402737 0.00902284662769834 1 4.42195100631191 10.5658936086663 0.424530897457175 0.153540806014596
AT4G34750_at 5.44949820478808 6.22598084879859 5.14651789283406 4.90043444429853 6.29036886010552 5.6325675407233 4.7739050215786 4.66833469156752 5.38035138103325 4.76572546556602 6.69021660665912 6.41486219916239 5.60142666227769 5.94572784091963 5.56954165524518 5.29853767968243 4.94979308218257 5.87822213673966 4.98223404100519 0.211024199218034 0.215570985831308 0.211024199218034 0.230880963866729 0.219046925720323 0.217750508014534 0.217946519574208 0.217575244325682 0.219520819905108 0.211024199218034 0.219607604398827 0.211024199218034 0.211281997647658 0.220312936488071 0.224689093340080 0.211673267373656 0.224158595726235 0.219190706016001 0.213032097704005 4 4 + 16577592 16577984 16577805.182 16577487 16578457 + gene protein_coding_gene FALSE TRUE AT4G34750.1 auxin-responsive protein, putative / small auxin up RNA (SAUR_E) similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G19840.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79953.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.481906589898795 3.37640397385180 0.00902849108333823 1 4.42138233270546 10.8041065774501 0.481906589898795 0.182104990251458
AT1G68370_at 6.96341870732553 6.99072311601772 7.32304298815552 7.0679202671372 7.01504361999603 6.75460607032382 7.16439546359759 7.03571217239504 5.7662605529795 5.94523742926311 6.71718893282414 6.77169122648541 6.9398342655845 6.81960929967273 6.00826169947543 6.7664600222965 6.06813680320048 6.1581732898429 6.22635322186285 0.242945622295863 0.244655767965575 0.248651733581263 0.242478860615450 0.241426094918749 0.252563541620446 0.242519347104759 0.248582524265961 0.25779824691731 0.244935610135912 0.245517171917932 0.245609810352444 0.242348752977284 0.243546767616298 0.256474629779754 0.241426094918749 0.256104423183761 0.245006937326158 0.253949349589517 1 0|1 /|- 25635861 25636549 25636232.875 25635408 25638401 - gene protein_coding_gene FALSE TRUE AT1G68370.1 ARG1 (ALTERED RESPONSE TO GRAVITY 1) DnaJ-like protein with homology to coiled coils found in cytoskeleton-interacting proteins. Identical to Chaperone protein dnaJ 15 (Protein ALTERED RESPONSE TO GRAVITY) (AtARG1) (AtJ15) (AtDjB15) (ATJ15) [Arabidopsis Thaliana] (GB:Q9ZSY2); similar to ARL1 (ARG1-LIKE1), heat shock protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G24120.1); similar to Os01g0512100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043176.1); similar to ARG1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37859.1); similar to Os02g0741100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048078.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.276738289645057 3.37567537804177 0.00903852785297513 1 4.42037200774751 13.2945843891808 0.276738289645057 0.0670729694883784
AT1G22410_at 9.00738251073273 9.21531841539823 9.27766073279597 9.39032342211197 8.29391225532112 8.3263329080893 9.21507597469736 9.43906166295996 9.70958170800757 9.52409838186198 9.48039487872505 9.82539179362306 9.21619217302926 9.43674059384653 9.7409269881383 9.21314712098842 9.14650694184803 9.59393514379254 9.52740745800464 0.0981475760733274 0.0966706737776427 0.098222782133508 0.105963380747549 0.104906138650779 0.106851594332221 0.0986326406785369 0.107333064817668 0.112675246446036 0.0966706737776427 0.100077576092129 0.0998875590898865 0.0966706737776427 0.102301115490964 0.103432446371013 0.101201686071466 0.107290453198391 0.105491751045211 0.0998996142220093 1 1|0 +|/ 7913666 7914668 7914372.3 7912037 7914992 + gene protein_coding_gene FALSE TRUE AT1G22410.1 2-dehydro-3-deoxyphosphoheptonate aldolase, putative / 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase, putative / DAHP synthetase, putative similar to DHS2 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G33510.1); similar to DHS1 (3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE 1), 3-deoxy-7-phosphoheptulonate synthase [Arabidopsis thaliana] (TAIR:AT4G39980.1); similar to putative 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 3 [Fagus sylvatica] (GB:ABA54865.1); similar to plastidic 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase 2 [Petroselinum crispum] (GB:AAB69320.1); similar to 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase [Morinda citrifolia] (GB:CAA75092.1); contains InterPro domain DAHP synthetase, class II; (InterPro:IPR002480); contains InterPro domain Calycin-like; (InterPro:IPR011038) -0.263763519871654 -3.37535395283724 0.00904295937256443 1 4.41992627447325 18.5424753037001 -0.263763519871654 0.0566475639549975
AT3G26380_at 8.09231951651338 8.2646422000316 8.44320373942905 8.50065320968084 8.79329149348661 8.54678715775457 8.45949827395194 8.29089357324206 7.07638634824636 8.06880784004325 8.0477475020668 7.6410340564076 8.02029409369178 8.11120733925401 7.82340977983758 7.96841221820067 7.89015009674385 7.81332510760893 7.87157633024268 0.131721741626476 0.133931631433982 0.133431163402892 0.141616946740457 0.133998159874324 0.142918910730089 0.131624784389472 0.132549088729402 0.139644876502096 0.130083496940094 0.132243090234582 0.128582639272941 0.128582639272941 0.128582639272941 0.135479220898686 0.132094608979001 0.138902324799715 0.135558523905708 0.133705326878126 3 3 + 9663743 9664348 9664059.636 9661302 9664535 + gene protein_coding_gene FALSE TRUE AT3G26380.1 glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family protein similar to alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative [Arabidopsis thaliana] (TAIR:AT3G56310.1); similar to Os01g0518500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043203.1); similar to Glycoside hydrolase, clan GH-D; Ricin B lectin [Medicago truncatula] (GB:ABD32283.1); contains InterPro domain Glycoside hydrolase, family 27; (InterPro:IPR002241); contains InterPro domain Glycoside hydrolase, clan GH-D; (InterPro:IPR000111); contains InterPro domain Ricin B-related lectin; (InterPro:IPR008997) 0.268168096934335 3.37300146699537 0.00907546291997858 1 4.41666359176515 16.2172633273798 0.268168096934335 0.0604918218800638
AT3G57520_at 7.06844047633989 7.37795630853737 7.90415722779736 8.12435255299448 8.40756796913407 8.18171662077004 7.89478355486055 8.00254883601084 3.47390757625096 5.89102997037732 4.07196241517209 3.41582769266549 6.60897220392014 5.19853563297543 3.27137315130076 5.03056802171357 7.34081876033864 4.23728803686541 5.27544052915513 0.2360425723569 0.236030749380062 0.234524490676172 0.234524490676172 0.237726160597091 0.237620217291932 0.235227956106581 0.234524490676172 0.260841939457837 0.238132065686617 0.234524490676172 0.237383621485727 0.234524490676172 0.245034393238769 0.248876181091722 0.239530954632162 0.259705508742689 0.237916109447588 0.241978698702930 3 3 - 21300002 21300692 21300284.909 21299742 21304135 - gene protein_coding_gene FALSE TRUE AT3G57520.1|AT3G57520.2|AT3G57520.3 ATSIP2 (ARABIDOPSIS THALIANA SEED IMBIBITION 2); hydrolase, hydrolyzing O-glycosyl compounds similar to ATSIP1 (ARABIDOPSIS THALIANA SEED IMBIBITION 1), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G55740.1); similar to DIN10 (DARK INDUCIBLE 10), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G20250.3); similar to putative imbibition protein [Brassica oleracea] (GB:CAA55893.1); similar to alkaline alpha galactosidase [Cucumis sativus] (GB:ABD52008.2); similar to alkaline alpha galactosidase II [Cucumis melo] (GB:AAM75140.1); contains InterPro domain Glycoside hydrolase, clan GH-D; (InterPro:IPR000111); contains InterPro domain Raffinose synthase; (InterPro:IPR008811) 0.292654256422311 3.3727132142707 0.00907945405253338 1 4.41626376373512 12.7587125756206 0.292654256422311 0.078717660662809
AT2G45240_at 6.4393787935445 7.00210662171385 6.9264615083381 6.84696792426452 6.5083584400124 6.21137574356163 6.60093748226288 7.06858616657185 7.13349940123146 6.10036802689172 5.7101571264847 6.25260727569652 5.90051523947058 6.18504454893466 5.88638499473176 5.83135474854141 5.22387614406875 6.52608678507775 6.47662125395357 0.308301750855245 0.308174549002912 0.302075907907942 0.298917760339853 0.2977029449204 0.306565576315051 0.311666631426044 0.306762005202945 0.321985979059652 0.291482836062328 0.294713109462994 0.296800262366943 0.297933491684844 0.291482836062328 0.315994083489858 0.291482836062328 0.32677821090932 0.299943603974455 0.304814087747086 2 0|2 /|+ 18665158 18665944 18665528.167 18663013 18666151 + gene protein_coding_gene FALSE TRUE AT2G45240.1 MAP1A (METHIONINE AMINOPEPTIDASE 1A); methionyl aminopeptidase Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. Identical to Methionine aminopeptidase 1A (EC 3.4.11.18) (MetAP 1A) (MAP 1A) (Peptidase M 1A) (MAP1A) [Arabidopsis Thaliana] (GB:Q9SLN5;GB:Q548T6;GB:Q8LAQ1); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to methionine aminopeptidase 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47866.1); similar to Os10g0508400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065022.1); similar to methionine aminopeptidase 1 [Ananas comosus] (GB:ABB91774.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) -0.392560449064461 -3.37093092316247 0.00910417256424031 1 4.41379136126697 12.9553547109844 -0.392560449064461 0.137344346585447
AT3G01390_at 8.50459405327073 8.90390798762919 8.71526425448675 8.83621443746908 8.54540063634973 8.42174645756606 9.12590702123578 9.3632084061431 8.82935628595219 9.27161726504247 10.2201365601073 10.2562646147742 9.92365226186505 10.1279235664892 10.1699338996786 10.0242702890720 9.77210607321712 8.99958205754693 8.85919273122926 0.168737475983852 0.161510201524303 0.159058397745322 0.157546576971856 0.163214766719295 0.169591953423184 0.157195251235922 0.15846538303358 0.173892158905628 0.162509133697433 0.157932618035207 0.157382208778082 0.157029971200876 0.160657501742618 0.159633183521750 0.160782683841347 0.170211297551345 0.171779547792655 0.164309227036612 3 3|0 -|/ 150292 150896 150560.222 150011 151538 - gene protein_coding_gene FALSE TRUE AT3G01390.1|AT3G01390.2 VMA10 (VACUOLAR MEMBRANE ATPASE 10) Subunit G of the vacuolar membrane ATPAse complex Identical to Vacuolar ATP synthase subunit G 1 (EC 3.6.3.14) (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (VATG1) [Arabidopsis Thaliana] (GB:O82628); similar to (VACUOLAR ATP SYNTHASE SUBUNIT G 2, VACUOLAR ATP SYNTHASE SUBUNIT G2), unknown protein [Arabidopsis thaliana] (TAIR:AT4G23710.1); similar to Vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (GB:O82702); contains InterPro domain Vacuolar (H+)-ATPase G subunit; (InterPro:IPR005124) 0.302631825333678 3.36626698805073 0.00916919172262147 1 4.40731964434740 18.263758286478 0.302631825333678 0.0857769786228249
AT1G24040_at 7.05440915891203 7.52998542460617 7.61639161073772 7.77860383300077 8.47119141599111 7.72862439323426 8.63393216640019 8.13715193906356 5.45026880881907 7.04334736350816 6.98990555068098 7.13828021276932 7.31850776016692 7.16647461901343 6.98626437966553 7.67132723942723 7.88361015471648 7.06127134331437 6.69219279223635 0.220750902132389 0.216399692464936 0.218246657092798 0.227957401218243 0.221446241355272 0.229206566425271 0.221058462647144 0.218883168494554 0.285068932685299 0.234678585092711 0.227255843469628 0.216399692464936 0.224638574744995 0.22704811830634 0.228135710355898 0.222762321667387 0.237704100796747 0.235470486375869 0.219372668033475 1 1 - 8505615 8506355 8506062 8503766 8506792 - gene protein_coding_gene FALSE TRUE AT1G24040.1|AT1G24040.2 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase [Medicago truncatula] (GB:ABE83214.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.470759321805116 3.36572001775816 0.00917684885205665 1 4.40656048530395 14.7048986489051 0.470759321805116 0.177385839327528
AT1G48090_at 9.49512503318873 9.55507346423872 9.8650801754094 9.89891156504587 10.0920903677567 9.6655311454428 9.57867424851065 9.51715050203803 9.06914662603682 9.5553631369823 9.7639226421945 9.33416846316067 9.79787532308862 9.34540711929927 8.93688338070018 9.78000953950938 10.0399805620060 9.74838541533407 9.46310866859262 0.123263586511508 0.120725042438615 0.125222055100843 0.123491766477298 0.121344116593807 0.121544179190953 0.124105252737286 0.123579216963674 0.139567613933832 0.120804513960646 0.123323076889741 0.121936644222911 0.123217174517226 0.124154427753067 0.131562516494105 0.118304802801736 0.126779155888086 0.123902651992002 0.127881117689355 1 1|0 -|/ 17736271 17737054 17736603.6 17735679 17761639 - gene protein_coding_gene FALSE TRUE AT1G48090.1|AT1G48090.2 C2 domain-containing protein similar to pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G17140.1); similar to vacuolar protein sorting 13C protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19476.1); similar to Os02g0470400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046831.1); contains InterPro domain Cytochrome cd1-nitrite reductase-like, C-terminal haem d1; (InterPro:IPR011048); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.287343539938665 3.36428167017718 0.0091970166054006 1 4.40456397449160 19.1863888291366 0.287343539938665 0.0755272727121021
AT1G12240_at 9.26740548331357 9.31442605435306 9.35513120154991 9.24264722234943 9.58569938445466 9.10222295316314 10.2849928004793 10.0821062289104 9.32946755878186 9.55552495605738 9.02453372278284 9.31595269010735 9.3712049135271 9.26045533976872 9.25359331869461 9.7333737679374 9.53066539061497 9.23474920995798 9.77232267003555 0.115671514607338 0.109825942541162 0.115085350895718 0.120739484458085 0.111810140706492 0.119513353550911 0.117973568505966 0.120716293945043 0.122864310700282 0.110574218802284 0.119512385672966 0.110981294310739 0.113436375581943 0.11462498180135 0.12107827352489 0.116173103212115 0.122198900316038 0.113974171972075 0.117340960170488 1 1|0 +|/ 4156690 4157410 4156999.1 4153650 4157642 + gene protein_coding_gene FALSE TRUE AT1G12240.1 ATBETAFRUCT4/VAC-INV (VACUOLAR INVERTASE); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds similar to beta-fructosidase (BFRUCT3) / beta-fructofuranosidase / invertase, vacuolar [Arabidopsis thaliana] (TAIR:AT1G62660.1); similar to acid invertase [Brassica oleracea] (GB:AAG36943.1); similar to acid invertase [Brassica oleracea] (GB:AAG36942.1); similar to soluble acid invertase [Pyrus pyrifolia var. culta] (GB:BAF35859.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) -0.313839901084595 -3.36257048447061 0.00922107062561726 1 4.40218841218252 18.9758311356378 -0.313839901084595 0.0931567899105513
AT1G55310_at 6.64187163606293 5.93562028592551 7.13575382697155 6.73695613181126 7.00755602816 7.04433560260874 5.8035307214307 5.75610017438869 6.14798210453736 6.54459529396963 5.84631470408411 5.99318541606192 6.30083456474534 6.36394410797902 6.08773716773935 6.63808131520266 6.77109731770823 6.33720396116757 6.63943907107171 0.191923393913188 0.197142705518776 0.194787520051611 0.201703294660293 0.198594758478651 0.211002405341526 0.212177853029755 0.207285729303985 0.193377505658966 0.200519349835412 0.208236815344387 0.192480505307359 0.195474083806204 0.191891620272841 0.205706585940792 0.191891620272841 0.205573766492267 0.197010593754508 0.197663777996679 1 1|0 +|/ 20634443 20636087 20635739 20633732 20636564 + gene protein_coding_gene FALSE TRUE AT1G55310.1|AT1G55310.2 SR33 (SC35-like splicing factor 33); RNA binding Encodes a SR spliceosome protein that is localized to nuclear specks, interacts with SR45 and the U1-70K protein of the U1 snRNP, has sequence similar to human SC35 protein. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to RNA-binding re (GB:ABE89154.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.397582011206195 3.35877213326090 0.00927470028684791 1 4.3969140289132 12.8758682055177 0.397582011206195 0.140742812676748
AT3G23690_at 6.98842267630947 7.41804522057251 7.17032693804208 7.12732513347808 7.8139393588411 7.53779362939847 7.25551704807349 6.89024616034508 7.92072372859756 7.3234762021401 8.18473985493542 7.8592843548156 7.92355580218182 8.08471267617244 7.82994008085008 7.98009292667007 7.61344962963295 7.98695669453718 7.33943776648449 0.155245213366938 0.151526512502192 0.15521871745545 0.153072709626176 0.145046197989495 0.166514569304802 0.145441506002143 0.150088772173732 0.143990194028257 0.153280698307222 0.145077888967275 0.148705298760657 0.153895596381593 0.151886184466070 0.151623568630706 0.143990194028257 0.157433197106515 0.144744101629150 0.146898628648121 3 3|0 -|/ 8529081 8529941 8529467.778 8528639 8531019 - gene protein_coding_gene FALSE TRUE AT3G23690.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G48560.1); similar to Os01g0915600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045188.1); similar to bHLH transcription factor, putative [Brassica oleracea] (GB:ABD64920.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.339625379340932 3.35825529088576 0.00928202297307076 1 4.39619620397235 15.0055623880734 0.339625379340932 0.108915052753165
AT2G01650_at 8.4270374963463 9.04082014716365 9.11404134755045 9.37557560699221 8.9258168684264 8.50914325856668 7.83853392003867 7.91397221353825 6.87282163862336 6.6917994929596 6.5756841033858 7.11897065004269 6.58514490095842 7.15749721752306 6.01747936665224 7.37145307244206 7.27056923579352 7.14924542165644 6.84249048281062 0.194429397484947 0.186580901964727 0.193845855671936 0.189422200127736 0.190549703329212 0.190386159389972 0.188813984241042 0.189975050336375 0.204515792270257 0.192781832238896 0.208550030030746 0.195232242616025 0.190337447439083 0.209469022763744 0.19452083407515 0.19104826487527 0.209083710097537 0.193403854815969 0.189439327443278 2 2 - 284883 285566 285115.727 284671 286492 - gene protein_coding_gene FALSE TRUE AT2G01650.1 PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2); nucleic acid binding / zinc ion binding encodes a peripheral membrane protein that contains UBX domain and interacts with AtCDC48 in vitro and co-fractionates with membrane-associated but not soluble AtCDC48 in vivo. similar to PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G27310.1); similar to Os09g0401600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063122.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR01744.1); similar to Os03g0636600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050722.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain PUG; (InterPro:IPR006567) 0.389719142018905 3.35614423941272 0.00931199573353567 1 4.39326389166998 15.4971806244218 0.389719142018905 0.136750106287442
AT2G44940_at 4.34176999100787 4.20490520406137 3.30479288360265 4.04135922951345 4.52412737636937 4.30887322885289 4.90328875577391 5.69740102856248 4.50420768562665 5.17883291399289 6.8508937980981 7.4157220538561 7.13519303199462 6.46750735046192 6.56228976320686 6.31982474129433 6.03523974125607 5.65535859626068 4.75458266108257 0.220598868380574 0.218511661363754 0.229191809416710 0.236744821301604 0.218572877888628 0.224435380360253 0.220611990348457 0.224434444015563 0.224510627609688 0.219195180247292 0.234556556166344 0.234062469931849 0.226862449596308 0.241612866166015 0.228437590514084 0.227289690530322 0.241858560623897 0.220281990252982 0.225772385499414 2 2 + 18544773 18545230 18545004.364 18544332 18545493 + gene protein_coding_gene FALSE TRUE AT2G44940.1 AP2 domain-containing transcription factor TINY, putative encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. similar to AP2 domain-containing transcription factor TINY, putative [Arabidopsis thaliana] (TAIR:AT3G60490.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE92766.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.50032974119303 3.35513385742778 0.0093263771196859 1 4.39186024608332 10.0997120729451 0.50032974119303 0.192566424679954
AT1G67060_at 4.15456685137342 5.00808780700232 5.70098499122576 5.22679570278641 6.25667774137605 5.7075268162959 4.97340392184776 4.76398187293896 5.07517289221535 4.8854985446372 5.28555390082945 5.21049757400575 5.58328250717845 5.50513429630514 5.0741571223628 4.83209323062017 5.20353271527408 4.78640604329595 5.52991395137447 0.250499840375622 0.243679836282209 0.239549416168254 0.242675887861071 0.251417387351409 0.240715426273741 0.246869990000659 0.238675877167213 0.251178841568172 0.240770373063244 0.240545153278743 0.237125187542249 0.252023126767456 0.237125187542249 0.244398540520238 0.237125187542249 0.251525676769614 0.243150295817137 0.246262697315141 1 1|0 +|/ 25040394 25042302 25041406.444 25040279 25043052 + gene protein_coding_gene FALSE TRUE AT1G67060.1 similar to Os02g0221600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046323.1); similar to hypothetical protein [Plasmodium falciparum 3D7] (GB:NP_705382.1) 0.509769955311025 3.35391824542421 0.00934371059546653 1 4.39017132283314 10.3983085313440 0.509769955311025 0.197219903667591
AT2G36835_at 9.89022294621592 9.7850236924549 9.86767719990668 9.86834773933238 9.46638674135423 9.39712698555967 10.1615422431087 10.3192687339627 9.3612782162144 9.7626264248057 9.13657845249608 9.39617274310505 9.4280551583464 9.4903735317215 9.70572560160236 9.36884747302986 9.53344201432192 9.11335646447862 9.34369092553045 0.0996278562265838 0.0995061498168219 0.103746818303292 0.100103349524199 0.103325306019132 0.0970312687276694 0.100259411995031 0.106012194973085 0.104613278161434 0.0964869070901886 0.10271643794632 0.097342798720058 0.103458646235236 0.0996758482397769 0.101022063422055 0.102096731821744 0.101196497843670 0.110063012086571 0.0987836172359494 2 2|0 -|/ 15456918 15458346 15457856.778 15456682 15458505 - gene protein_coding_gene FALSE TRUE AT2G36835.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07355.1); similar to Os01g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044417.1) -0.240879664846554 -3.35353643852007 0.00934916178059707 1 4.38964081770113 19.2873332612725 -0.240879664846554 0.0349304279330839
AT1G01170_at 10.3765454185073 10.5265217245964 10.5522927355782 10.5236623425613 11.2229266431792 10.9199205383242 10.6561052036797 10.4926686506713 10.7818367480409 10.8686157753967 11.14348857917 11.2001892460842 10.8950379708608 11.1360114228951 11.0759084794384 11.0739551515195 10.8627255589839 11.0677836170864 10.7608366925816 0.0934810271932808 0.088893057947841 0.0961034974280406 0.0915776448098904 0.088893057947841 0.0949890116807822 0.088893057947841 0.0921361112878846 0.0903644388826126 0.0892774757235462 0.0889353144435078 0.0895756742005278 0.0888950574798715 0.0914165208481586 0.0916174893107763 0.091303958981433 0.0986424398810695 0.088893057947841 0.0914100843379883 1 1|0 -|/ 74109 74399 74247.1 73931 74737 - gene protein_coding_gene FALSE TRUE AT1G01170.1|AT1G01170.2 ozone-responsive stress-related protein, putative similar to ATOZI1 (Arabidopsis thaliana ozone-induced protein 1) [Arabidopsis thaliana] (TAIR:AT4G00860.1); similar to Os06g0115100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056609.1); similar to Os06g0114500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056604.1); similar to Protein of unknown function (DUF1138) [Oryza sativa (japonica cultivar-group)] (GB:AAX95468.1); contains InterPro domain Protein of unknown function DUF1138; (InterPro:IPR009515) 0.272432373397722 3.35311230697939 0.00935522116523702 1 4.38905148308563 21.5891556947678 0.272432373397722 0.0651745089255847
AT4G22310_at 10.7319841436388 10.8182441722436 10.9383783973351 10.783421257517 11.0102832977473 10.6756376384138 10.8389744489636 10.5608620535068 10.4913624841561 10.3943343266243 10.9670894319368 11.0166901532922 10.7201431926744 10.9006943286402 10.9060096349499 10.9007555110045 10.5040816546907 10.7660168729417 10.1960174819873 0.0797415269374553 0.0770591778494669 0.0803343094137666 0.0799602084086441 0.0779135862384824 0.08183579656117 0.0806659395136245 0.0795770986509037 0.0891500395892417 0.0769664074219453 0.0805671184990868 0.0788239401620724 0.080338172529633 0.0846634267364384 0.080358778596205 0.0779994493293813 0.081148844668187 0.0779908089151529 0.0805736246711856 4 4|0 +|/ 11791472 11792609 11792155.875 11791357 11792888 + gene protein_coding_gene FALSE TRUE AT4G22310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14695.1); similar to Os08g0344300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061597.1); similar to Os07g0449100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059546.1); similar to Protein of unknown function UPF0041 [Medicago truncatula] (GB:ABD28486.1); contains InterPro domain Protein of unknown function UPF0041; (InterPro:IPR005336) 0.294513804879425 3.35038980732873 0.00939421468960153 1 4.38526801626331 21.3926014403902 0.294513804879425 0.0813148361442047
AT1G19700_at 6.89114835835296 7.4602854825196 8.42806644708868 8.64061257615147 8.2292866342517 8.17492511236514 8.45744348518598 8.38544953416005 6.62037863154529 7.61235152140443 7.15486222532814 7.16150182095705 8.00855301090112 7.21533110981135 6.73619125873651 7.70940299164974 8.08026521366362 7.0058541062782 7.62219070950964 0.223367696672307 0.223662538895356 0.230557149918191 0.225408158434411 0.226401655023777 0.241389693818237 0.221812128287003 0.221812128287003 0.240168375919830 0.23657612696083 0.233802702862781 0.229075368128363 0.234315255349392 0.243852495372137 0.229017569735741 0.230160200522298 0.224971655972816 0.228741293521028 0.224910078520895 1 1 - 6809972 6810696 6810248 6809735 6812648 - gene protein_coding_gene FALSE TRUE AT1G19700.1 BEL10 (BEL1-LIKE HOMEODOMAIN 10); DNA binding / transcription factor similar to BLH3 (BLH3) [Arabidopsis thaliana] (TAIR:AT1G75410.2); similar to Os12g0636200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067363.1); similar to BEL1-related homeotic protein 30 [Solanum tuberosum] (GB:AAN03627.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.334331286877763 3.35028657040051 0.00939569667523218 1 4.38512452956692 15.4178866227522 0.334331286877763 0.106288707557131
AT3G02300_at 7.48860707186981 7.70285497852632 7.90751859572816 7.81378948082868 8.27838689267173 7.89058788934616 8.04009611780906 7.56892963651285 6.70133928563307 7.83579558211823 8.10909519506472 7.9564903773498 7.59454625285343 7.93408735360999 7.64064326972399 8.42572559340326 7.93580733006825 7.25831984825412 7.77591999582076 0.192696752617448 0.188269056797339 0.189539374696036 0.191322943247676 0.199885454129262 0.205961872709817 0.196249116720304 0.20447576984845 0.218863863755500 0.186510690357148 0.191231753297564 0.19128050474557 0.196911051085282 0.199578374823530 0.200498913452405 0.186510690357148 0.219300435972604 0.198432216244579 0.195964244176970 3 3|0 +|/ 463068 463735 463349.5 461155 464180 + gene protein_coding_gene FALSE TRUE AT3G02300.1 regulator of chromosome condensation (RCC1) family protein similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to putative chromosome condensation regulator [Oryza sativa (japonica cultivar-group)] (GB:AAN08220.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96895.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) 0.345801605740551 3.34780136052968 0.00943144652899024 1 4.38166999580985 15.4836085114441 0.345801605740551 0.113092676948542
AT4G17600_at 10.3886440716 10.6472092473867 9.86396456989704 9.93967202501821 10.5286813029085 10.2017985938086 10.8694733408008 11.1115932633109 11.1191939640246 11.2016794876633 11.2401724594424 11.4635044042388 11.0029399446523 11.2644996594363 11.3606700268590 11.2442419647814 10.6693734133372 11.1700625771962 11.1409383398389 0.0861602552417347 0.082346105446803 0.0842692034733891 0.0870668933424565 0.0830613395773143 0.085200889656621 0.0858836167312444 0.0824936513903519 0.0967628362156717 0.0837497109279694 0.082186848710809 0.0820398238687021 0.0841756644144645 0.0858329436099592 0.0835674774579468 0.0820398238687021 0.0894562514653637 0.0831381368398114 0.082514338103902 4 4|0 +|/ 9803965 9804584 9804313 9803718 9804859 + gene protein_coding_gene FALSE TRUE AT4G17600.1 LIL3:1; transcription factor Encodes Lil3:1 (light-harvesting-like) protein. Belongs to the Lhc super-gene family encodes the light-harvesting chlorophyll a/b-binding (LHC) proteins that constitute the antenna system of the photosynthetic apparatus. A generic LHC motif is present in Lil3:1. similar to lil3 protein, putative [Arabidopsis thaliana] (TAIR:AT5G47110.1); similar to Lil3 protein, putative [Brassica oleracea] (GB:ABD64919.1) -0.298852532732908 -3.34680910575575 0.00944576003436088 1 4.38029051264848 21.609314711884 -0.298852532732908 0.0844361230714614
AT2G02400_at 7.51343745576995 7.7460272843911 6.80903917610778 6.82829022469227 8.69830429898527 7.52744700559602 6.72590789181892 6.80229868759615 6.22972934120114 6.14507523923888 7.3345833502256 7.10012194099179 7.01536139399272 7.13389115903322 7.14917654000485 6.60143654690418 6.0993432995262 6.53346900365904 5.87079032424632 0.246877826230356 0.236790129925822 0.260171876954397 0.253479002222505 0.2434671809443 0.259402745741635 0.236034265149111 0.236288113663982 0.248701079977154 0.246488607728064 0.23720096381695 0.234864552501229 0.246161809082374 0.238494483354822 0.239383278765503 0.243197139841113 0.255887428676089 0.24081576081537 0.247118471522929 2 2 - 631464 632049 631700.364 631235 632574 - gene protein_coding_gene FALSE TRUE AT2G02400.1 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT5G58490.1); similar to Lipocalin [Medicago truncatula] (GB:ABE93736.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.528955141257365 3.34604429195195 0.00945680821737056 1 4.37922714694658 13.8077379393802 0.528955141257365 0.207030885023179
AT2G20900_at 5.59482569963799 5.83564731718118 6.09254724181579 5.7724758190152 6.00170896755164 5.62718510931174 5.27999572413147 5.25853218503193 5.53275120073178 5.29004254511956 6.13651530685736 5.78629171762543 5.56378297801999 5.79136454603272 5.16768706277256 5.98730275231178 4.62564019452706 5.62786239071085 5.18756655195451 0.233097691981199 0.228693834531107 0.233320578914124 0.240375964931254 0.230108912813863 0.235568120765677 0.230016980731560 0.230220408485046 0.247770575635189 0.228939918453806 0.235523099443114 0.229682059318458 0.231375943634836 0.234187795011173 0.240083982154105 0.229679321719644 0.261998576956041 0.232162437830378 0.231335550802316 2 2|0 -|/ 8996907 8997822 8997284.444 8996356 9000120 - gene protein_coding_gene FALSE TRUE AT2G20900.1|AT2G20900.2|AT2G20900.3|AT2G20900.4 diacylglycerol kinase, putative|diacylglycerol kinase similar to diacylglycerol kinase accessory domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G28130.1); similar to calmodulin-binding diacylglycerol kinase [Lycopersicon esculentum] (GB:AAG23128.1); similar to diacylglycerol kinase variant A [Lycopersicon esculentum] (GB:AAG23130.1); similar to diacylglycerol kinase variant B [Lycopersicon esculentum] (GB:AAG23131.1); contains InterPro domain Diacylglycerol kinase accessory region; (InterPro:IPR000756); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206)|similar to diacylglycerol kinase accessory domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G28130.1); similar to diacylglycerol kinase variant A [Lycopersicon esculentum] (GB:AAG23130.1); similar to diacylglycerol kinase variant B [Lycopersicon esculentum] (GB:AAG23131.1); similar to diacylglycerol kinase [Lycopersicon esculentum] (GB:AAG23129.1); contains InterPro domain Diacylglycerol kinase accessory region; (InterPro:IPR000756); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) 0.315124077799940 3.34527230906345 0.00946797372368256 1 4.37815374080282 11.1441610752309 0.315124077799940 0.094970528149415
AT1G45160_at 7.29246703852638 6.87971084983812 7.29824105107583 7.25243957904116 7.98596535335937 7.56995592956399 7.26617664760154 6.83238403033045 6.633419493679 6.59308576586768 6.68425389687553 6.91009951937099 6.9541035614894 7.07625886268522 6.614050423723 7.26189119787017 7.22201683882037 7.25887864968632 6.92801030509609 0.170352110674444 0.173184021104130 0.170687323346075 0.173402377938930 0.174819931642117 0.177937190780191 0.166961482270009 0.169124462983198 0.177392540521359 0.175448829233762 0.174661532527435 0.186541677945980 0.174323322631262 0.182052149361903 0.172140687224806 0.172493202200343 0.177741161285778 0.176499058103476 0.172946847242727 1 0|1 /|- 17086264 17088049 17086937.875 17085986 17092985 - gene protein_coding_gene FALSE TRUE AT1G45160.1|AT1G45160.2 kinase| similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to IRE (INCOMPLETE ROOT HAIR ELONGATION), kinase [Arabidopsis thaliana] (TAIR:AT5G62310.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G17850.1); similar to nodule-specific IRE-like protein [Medicago truncatula] (GB:AAX11214.1); similar to Os03g0711800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051060.1); similar to putative protein kinase [Oryza sativa] (GB:AAK18843.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Globular protein, non-globular alpha/beta subunit; (InterPro:IPR011070); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.369244050310084 3.34433920959660 0.0094814880057236 1 4.37685621197057 14.1551005467651 0.369244050310084 0.126425323794822
AT1G59830_at 7.6079652975775 7.4034104082221 7.1531282749275 7.22953530248521 7.78153783711948 7.30296922305431 7.18060478321204 7.46676918448864 7.30807828691456 7.15780942668753 8.29281276091057 8.362402189109 8.2094892623279 8.37095331734476 7.52806782615011 8.3585805014691 8.10451428726318 6.91369716758785 7.4677324647392 0.163079290591996 0.161060786048665 0.164353634728495 0.165908752856817 0.162773144737249 0.175311035428186 0.162808494637673 0.167604257001994 0.191416292742851 0.174891793920375 0.165208473081303 0.161060786048665 0.166012023163404 0.16140617046338 0.165444977762773 0.163248791166219 0.171122334107226 0.174103464659370 0.162222148940921 1 0|1 /|- 22024400 22024794 22024587.8 22024184 22026149 - gene protein_coding_gene FALSE TRUE AT1G59830.1|AT1G59830.2 PP2A-1 (protein phosphatase 2A-2); protein serine/threonine phosphatase Encodes one of two isoforms of the catalytic subunit of protein phosphatase 2A. Identical to Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) (PP2A2) [Arabidopsis Thaliana] (GB:Q07099); similar to PP2A-2 (protein phosphatase 2a-2), protein phosphatase type 2A [Arabidopsis thaliana] (TAIR:AT1G10430.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)|Identical to Serine/threonine-protein phosphatase PP2A-2 catalytic subunit (EC 3.1.3.16) (PP2A2) [Arabidopsis Thaliana] (GB:Q07099); similar to PP2A-2 (protein phosphatase 2a-2), protein phosphatase type 2A [Arabidopsis thaliana] (TAIR:AT1G10430.1); similar to type 2A protein phosphatase-1 [Vicia faba] (GB:BAA92697.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.329231589464049 3.34410362109570 0.0094849032865885 1 4.37652859563776 15.0551257339529 0.329231589464049 0.103630519489805
AT3G14690_at 10.0408802114563 10.3190148280824 10.1228816747980 10.316060782916 10.2487505976126 9.97591649080273 10.5437844387016 10.7211155134298 9.57202606790864 10.2425745971941 9.55162373355703 9.31316402421217 9.66212801839249 9.44599694589767 9.14055587395797 9.8804522668222 9.77789844130932 9.66721398476383 9.89249696536999 0.114152486321874 0.107635583801982 0.109920732470768 0.113452664757460 0.107686972373123 0.113210486801508 0.110841157117342 0.109498644188638 0.114315021697736 0.110481009719617 0.110828944249308 0.110492526732134 0.109696959677552 0.124362271762538 0.108891198609249 0.111739845645352 0.123783689582927 0.111360341532986 0.110535147174598 3 3 + 4938968 4939221 4939096.182 4937324 4939472 + gene protein_coding_gene FALSE TRUE AT3G14690.1 CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15); oxygen binding putative cytochrome P450 similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.293891538547661 -3.34400514126064 0.00948633131249287 1 4.37639164465178 20.0146730861941 -0.293891538547661 0.081273403934434
AT3G04670_at 6.46116887824052 7.1364713422819 7.53206631937146 7.80542947207605 7.21330936916245 6.9048876112973 6.05541407415655 6.46499108532231 6.14640782066043 5.5479434553209 6.02793429086185 5.90311121511638 5.70567903921422 5.83546185772459 5.86085058539511 6.29009919241799 5.6087784257912 5.42059364692016 5.77536443406098 0.279871045575397 0.29933035884831 0.295283013288395 0.302476499463195 0.283298557929469 0.292949998263947 0.283417825409763 0.280997538704247 0.28814547811491 0.285736553242875 0.282558400640674 0.279493778450432 0.28139353990664 0.28853531235305 0.286787362265823 0.278786938756937 0.291474292731629 0.297506202694914 0.278786938756937 3 3 - 1266539 1267273 1267036.364 1266248 1268356 - gene protein_coding_gene FALSE TRUE AT3G04670.1|AT3G04670.2 WRKY39 (WRKY DNA-binding protein 39); transcription factor member of WRKY Transcription Factor; Group II-d Identical to Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39) (WRKY39) [Arabidopsis Thaliana] (GB:Q9SR07); similar to WRKY74 (WRKY DNA-binding protein 74), transcription factor [Arabidopsis thaliana] (TAIR:AT5G28650.1); similar to Os03g0741400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051223.1); similar to WRKY DNA binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99243.1); similar to Os12g0597700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067197.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 39 (WRKY DNA-binding protein 39) (WRKY39) [Arabidopsis Thaliana] (GB:Q9SR07); similar to WRKY74 (WRKY DNA-binding protein 74), transcription factor [Arabidopsis thaliana] (TAIR:AT5G28650.1); similar to WRKY DNA binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99243.1); similar to Os12g0597700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067197.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.42136840482129 3.34195427070932 0.00951612171670145 1 4.37353933145437 12.7741183198357 0.42136840482129 0.154168118883641
AT1G18060_at 10.7583985876910 10.7274076872943 10.709557405994 10.6886217350193 10.7993067480717 10.5638040257525 11.8002538486181 11.6977422382950 11.6910239506796 11.8007057499663 11.8601698187239 11.7550838035765 11.7185996420002 11.8874514418403 11.8413436672279 11.9209120316224 11.4552023617537 11.9092810852525 11.7139961592007 0.0517051659683521 0.0517649067034759 0.0513920665275883 0.0515501762331145 0.055781426855371 0.0536477754408505 0.0589029358033571 0.052216979301358 0.0545383390443054 0.0521992824850392 0.050052823834992 0.0503690745445778 0.0515631286197547 0.0544653450834062 0.0502279910726001 0.050052823834992 0.0614082607905087 0.050052823834992 0.0516604173858018 1 1 - 6212075 6213186 6212503.727 6211867 6213437 - gene protein_coding_gene FALSE TRUE AT1G18060.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52789.1); similar to Os01g0120500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041868.1) -0.248682291773884 -3.34137528823252 0.00952454963047862 1 4.37273400004403 22.7325102519829 -0.248682291773884 0.0449172374930716
AT4G27710_at 9.07977241530122 9.07847603827797 8.82227956782616 9.02690276731284 9.37625423285445 9.01817161504175 9.79214272531914 9.55381474964585 9.19673328119932 9.64218656367046 9.14310797020316 9.4037492670411 8.91374900004819 9.10735185235861 9.08200631013176 9.333264650805 9.33455063428607 9.1954174113355 9.5532457222283 0.142363955365877 0.135099758525580 0.146104627009942 0.143119866076632 0.138550642196672 0.141923589752737 0.140693741757776 0.138697948998787 0.15004471336197 0.138424896973539 0.14145544936899 0.135275207917958 0.143777245801103 0.139348225750398 0.142654366668765 0.134923378814722 0.142945684652097 0.135536373585538 0.137867274229856 4 4 + 13829895 13830384 13830205.727 13828438 13830602 + gene protein_coding_gene FALSE TRUE AT4G27710.1 CYP709B3 (cytochrome P450, family 709, subfamily B, polypeptide 3); oxygen binding member of CYP709B similar to CYP709B1 (cytochrome P450, family 709, subfamily B, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46960.2); similar to CYP709B2 (cytochrome P450, family 709, subfamily B, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46950.1); similar to cytochrome P450 CYP709C1 [Triticum aestivum] (GB:AAT68297.1); similar to Os07g0635500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060386.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.295027494191878 -3.33747050238085 0.00958159437618096 1 4.36730159751461 18.5450791769769 -0.295027494191878 0.0824321181366719
AT1G79970_at 7.00758937533016 6.81203709526423 6.8328629617786 6.37783195509102 7.30483055901653 6.93617413991166 7.4557907403077 7.30097658001271 6.12784205812115 6.56793214685622 6.96600523670921 7.51373852500871 7.24920124740692 7.51591528364277 7.46598559599329 7.70378092103836 7.59364965803361 7.06199489710147 6.57528159705031 0.170340782273182 0.170999911278147 0.172775563101965 0.177317154390259 0.168481946179245 0.171087599394839 0.169133180827825 0.175608663334903 0.196514343074755 0.181242295986886 0.17839122226287 0.171961990863630 0.183965370071655 0.179106659178357 0.171813294385846 0.172390310636374 0.176782529035745 0.179591954391043 0.17771706362257 1 1 + 30087792 30088449 30088030.636 30086971 30088787 + gene protein_coding_gene FALSE TRUE AT1G79970.1|AT1G79970.2 similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT2G25690.2); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE87128.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE83632.1) 0.339462554747494 3.33562883968428 0.00960862346400267 1 4.36473880077846 13.9072462698187 0.339462554747494 0.110154274449227
AT4G31985_at 9.51735195147987 9.62882337150168 8.95836117667025 9.23808178746856 8.68191308570118 8.62281639234973 8.93404492128574 9.69826371586988 8.78704698595725 9.00948624743414 8.95896908024056 9.40096102195088 8.6831334796439 8.81047978613903 9.53090151317195 8.52281430506597 8.0309418629082 7.84465921217454 9.05306831941902 0.152455599514620 0.148131585688293 0.147032847668556 0.147366676770294 0.146307630125093 0.167753287772609 0.148169522392815 0.149767642195171 0.152835393953983 0.155267360805161 0.158102796731727 0.150038491530137 0.156966788240743 0.162668084629147 0.146307630125093 0.153976599493115 0.156984455207367 0.152353994522997 0.150922696328459 4 4 + 15470096 15470348 15470294.727 15469901 15470565 + gene protein_coding_gene FALSE TRUE AT4G31985.1 60S ribosomal protein L39 (RPL39C) Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39B) [Arabidopsis thaliana] (TAIR:AT3G02190.1); similar to putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD19088.1); similar to Os02g0797200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048394.1); similar to 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD72315.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) -0.398168765547558 -3.33540027797539 0.00961198351936743 1 4.36442071308877 17.9963194087569 -0.398168765547558 0.142514721933232
AT2G35900_at 7.23720510080254 7.45013263332277 7.19273587053036 6.9577297169385 7.00833918123232 7.65145000194246 6.59048197023125 6.83061469615768 6.68852977725417 6.48338058859646 7.32902016445681 7.0016761628115 6.97820896144808 7.0592583271362 7.77450255584256 7.08415351297448 7.84048546930934 7.09917329474913 6.90924079135602 0.185975347331932 0.183279763421303 0.185248685303988 0.18763352356487 0.181596745540775 0.184270455402873 0.191741458382181 0.191230963932252 0.183742311915637 0.190793920854702 0.18324143950817 0.18523523114564 0.187450633940452 0.188884935148893 0.184278096591889 0.181596745540775 0.181596745540775 0.185492743725979 0.181761838317654 2 2 - 15077309 15078585 15077846 15077076 15078732 - gene protein_coding_gene FALSE TRUE AT2G35900.1 similar to Mal d 1-associated protein [Malus x domestica] (GB:AAP86780.1) 0.376273923110574 3.33447110794997 0.00962565582841595 1 4.36312752842968 14.0970995756413 0.376273923110574 0.130861973257539
AT1G64740_at 8.64417684686802 8.73268144268854 8.82691184180812 8.6304213361808 9.02381727230864 8.90565895539019 9.12638315799308 9.0932313234237 8.50719124453503 8.34682250526513 8.01885457511016 7.71585960299541 8.10619061722692 7.9277579165988 7.74640983113719 7.86715189623057 7.9549605069735 8.06609575401748 8.24255089779928 0.162187944399524 0.162373430536019 0.160490981759055 0.156861281543509 0.169543097017558 0.174211918814484 0.174670185540788 0.171659515525973 0.186228942966139 0.165308242389068 0.160938923596774 0.161237778285348 0.161817235746246 0.168032180992322 0.161649603866394 0.159356256444878 0.181885870292789 0.170995695260908 0.162465275208984 1 1 + 24055326 24055808 24055482.636 24053669 24056150 + gene protein_coding_gene FALSE TRUE AT1G64740.1 TUA1 (ALPHA-1 TUBULIN) alpha-tubulin expressed primarily in stamens and mature pollen Identical to Tubulin alpha-1 chain (TUBA1) [Arabidopsis Thaliana] (GB:P11139); similar to TUA3 (tubulin alpha-3) [Arabidopsis thaliana] (TAIR:AT5G19770.1); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to alpha-tubulin [Miscanthus sinensis] (GB:CAD26887.1); similar to alpha1 tubulin (GB:1503274A); similar to Tubulin alpha-6 chain (Alpha-6 tubulin) (GB:P33627); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) -0.246263651492479 -3.33415666238939 0.0096302873718466 1 4.36268987090118 17.0183760904507 -0.246263651492479 0.0429168637990996
AT1G16970_at 5.84868798469997 6.57225779783947 6.18960710959314 6.65564396098524 5.50246219685026 5.77791371346292 5.81685137704681 5.69539652052692 4.63471203726058 5.0905444369528 3.92731894311563 3.92387242656556 3.7541423956969 3.78517003574312 3.78217147295039 4.24861627225598 4.1463334608093 4.0965045334118 4.85739376825309 0.200114417635832 0.201264576696906 0.197392635419726 0.199948818094269 0.202374723072622 0.202625857293395 0.212209770446051 0.205803775777020 0.202538154625759 0.201178796678251 0.201616800016174 0.197730904300673 0.198288713972513 0.205619054781276 0.205072072705173 0.201221826381634 0.200274597275024 0.199723935995272 0.201121934624171 1 1|0 -|/ 5801161 5801940 5801530 5800760 5805792 - gene protein_coding_gene FALSE TRUE AT1G16970.1 ATKU70/KU70 (Arabidopsis thaliana Ku70 homolog); double-stranded DNA binding / protein binding Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. similar to Ku70 homolog [Populus nigra] (GB:BAF03493.1); similar to Os07g0184900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059061.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain ATP-dependent DNA helicase, 70 kDa subunit; (InterPro:IPR006165); contains InterPro domain Ku; (InterPro:IPR006164); contains InterPro domain Ku70/Ku80, N-terminal alpha/beta; (InterPro:IPR005161); contains InterPro domain Ku70/Ku80 C-terminal arm; (InterPro:IPR005160) -0.427379448196155 -3.33367678421132 0.00963736012104669 1 4.36202193468548 10.4168023859876 -0.427379448196155 0.157790217712943
AT1G25280_at 7.96321092566662 8.64450616642269 8.7356015822077 8.82715659554295 8.71770822657002 8.55728367767896 8.20076517323565 7.86520278298214 7.60252095711977 7.8205739721449 8.01945900873253 8.0755200110115 7.70957253186006 7.64816030049699 7.55866199381151 8.46542121632775 8.0907290053104 7.91233804775863 7.69919381512019 0.173657833584065 0.164273900654703 0.173429702146823 0.165961707317713 0.166286858001455 0.165868552209324 0.165289002593426 0.165656870973747 0.180549596306677 0.171063525328652 0.162386466453185 0.165897656957212 0.168135168951914 0.165615797986224 0.16881641037734 0.162819659115540 0.175957132460404 0.177712484247890 0.172400056774416 1 1 + 8866047 8866535 8866306.545 8863764 8866792 + gene protein_coding_gene FALSE TRUE AT1G25280.1|AT1G25280.2 AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP1 (TUBBY LIKE PROTEIN 1), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G76900.2); similar to Os05g0437900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055656.1); similar to Os08g0103300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060771.1); similar to CAA303719.1 protein [Oryza sativa] (GB:CAB53492.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007)|similar to AtTLP1 (TUBBY LIKE PROTEIN 1), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G76900.2); similar to Os12g0163400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066230.1); similar to Os05g0437900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055656.1); similar to CAA303719.1 protein [Oryza sativa] (GB:CAB53492.1); contains InterPro domain Tubby; (InterPro:IPR000007) 0.384284720687587 3.33332337823241 0.00964257232873158 1 4.36153001560324 16.260135564226 0.384284720687587 0.135257877837878
AT3G18060_at 8.72673307126 8.9566202892856 8.63219295316727 8.91803385013145 8.80515885623734 8.745258944028 8.90314565035963 8.8294333641094 8.33301471407992 8.4671922245136 9.16765291591294 8.98909509342318 9.26911567703034 9.12006435353923 8.89122356339281 8.71925513560867 9.09570594118923 8.7813062583668 8.34787074529643 0.141906189117686 0.141884061515892 0.144446229190791 0.146023754965941 0.144059705213867 0.141008285931825 0.142248526477097 0.144676253816492 0.153154759549002 0.142892662802943 0.143697586671235 0.137074638868584 0.143218260925804 0.141856772371564 0.147541317234140 0.138353944681152 0.151100131535558 0.140475062693560 0.141642977894943 3 3 + 6186113 6186761 6186412.727 6183779 6187077 + gene protein_coding_gene FALSE TRUE AT3G18060.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G01330.1); similar to Os01g0125800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041893.1); similar to hypothetical protein MtrDRAFT_AC139526g3v1 [Medicago truncatula] (GB:ABE80134.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) 0.271331431574303 3.33330989026327 0.0096427713146369 1 4.36151124089098 17.5080070866246 0.271331431574303 0.0655725683042348
AT2G24150_at 8.75483078663894 9.14788132291596 8.16780659604885 8.29762917734818 8.87160878990049 8.59728603198605 9.43621903687837 9.63893516063466 8.99845337588187 8.96077315677236 9.24914483226558 9.73170309815771 9.21045330250793 9.20295267627515 9.20478844784538 9.11922866500094 8.30563650443547 9.15671001419295 9.06413272007457 0.173496826654341 0.164496345362292 0.189994303575529 0.176246092994865 0.164496345362292 0.173904669386556 0.165661497025268 0.164870410141936 0.180505731427843 0.171447052644208 0.167226691735349 0.168590692813395 0.164496345362292 0.179528471293367 0.171221588162126 0.169794384653367 0.192048156920144 0.172806924263528 0.166340107297294 2 2 - 10272743 10273285 10273032.364 10272564 10274468 - gene protein_coding_gene FALSE TRUE AT2G24150.1 HHP3 (heptahelical protein 3); receptor heptahelical transmembrane protein HHP3 similar to HHP2 (HEPTAHELICAL TRANSMEMBRANE PROTEIN2) [Arabidopsis thaliana] (TAIR:AT4G30850.2); similar to Hly-III related proteins [Medicago truncatula] (GB:ABE86349.1); contains InterPro domain Hly-III related proteins; (InterPro:IPR004254) -0.310546576468607 -3.33298283182996 0.00964759767627626 1 4.36105598190514 17.9417064178746 -0.310546576468607 0.0928207899464055
AT1G16720_at 11.0563970896860 11.0947917403401 11.2898451919161 11.2269667411728 11.3829845206659 11.1519411185508 11.9519265426763 11.9378862351333 12.2636424373529 12.0259412937456 11.9908395265824 11.7300409990933 11.8909556426906 11.9880236497360 11.6665463537557 11.9890461036318 11.6002044058846 11.9609941291645 11.9965933948720 0.0660401608492709 0.0609463731713433 0.0609463731713433 0.0628445956172686 0.0617577293816206 0.064580786003506 0.0617091429420256 0.0659562284871862 0.0651728148435252 0.0609463731713433 0.0609463731713433 0.0609463731713433 0.0609463731713433 0.061965348296883 0.0637328725665849 0.0629668367700216 0.0745839664625371 0.0625183197933721 0.0623765984248181 1 1|0 +|/ 5724890 5726205 5725451.111 5723081 5726471 + gene protein_coding_gene FALSE TRUE AT1G16720.1 oxidoreductase/ transcriptional repressor similar to transcriptional repressor [Arabidopsis thaliana] (TAIR:AT4G18810.1); similar to Os06g0704700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058511.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAO72612.1); similar to hypothetical protein MtrDRAFT_AC144538g9v2 [Medicago truncatula] (GB:ABE91079.1); contains InterPro domain NmrA-like; (InterPro:IPR008030); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) -0.245313516444309 -3.33218230446202 0.00965942166271585 1 4.35994160859518 23.3603292608381 -0.245313516444309 0.042036980731706
AT1G73440_at 4.7362695160909 5.1672740848303 4.39584251894669 4.9041031089438 4.94232732239449 4.84279671695057 5.28774483731655 5.22403308919325 4.67070322189442 5.26082317287202 5.12402882913962 4.92655018032286 5.08068712310844 4.58074272088073 4.57518758297819 4.9448160527768 4.83527575276542 4.82831603089102 5.76302506682065 0.211826438213477 0.203266181554547 0.199054294868312 0.210197939681644 0.206196094614911 0.210095858368117 0.204861051005160 0.203105551781698 0.211699099423462 0.204784078155648 0.203595253043101 0.200400291935955 0.198816242574124 0.205144836063231 0.209947531330736 0.198816242574124 0.209034749510551 0.204865596039001 0.201103162781395 1 1 + 27615248 27615818 27615506.778 27615024 27616476 + gene protein_coding_gene FALSE TRUE AT1G73440.1 calmodulin-related similar to EDA34 (embryo sac development arrest 34), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G00140.1); similar to Os04g0534300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053415.1); similar to Calcium-binding EF-hand; Ubiquitin interacting motif [Medicago truncatula] (GB:ABE85339.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) -0.35106479240167 -3.33048011499485 0.00968461400286707 1 4.3575718192385 9.98428274331844 -0.35106479240167 0.117123531204163
AT3G46530_at 8.48059171616485 8.7754563222077 8.9406836091202 9.01383669021584 8.62277674489377 8.5450494280069 8.64276377939907 8.66365149085968 8.42839876251536 8.5140156303822 7.23532451860076 7.5787803768434 7.81336956785941 7.90680444191116 7.4566911340628 8.3565258117846 8.2717941191466 7.84029065437576 8.44522630354422 0.124339976836307 0.122231883020241 0.121989156066077 0.120330910225246 0.124135521695302 0.123828340341085 0.125600264794173 0.126431037684584 0.125896339622985 0.125152452518909 0.129162994150329 0.12284041875191 0.126433092366109 0.121081050749834 0.125702034302173 0.120574549821013 0.123882594576125 0.128980686381413 0.120347126946980 3 3 - 17141727 17142265 17141986.455 17141352 17144323 - gene protein_coding_gene FALSE TRUE AT3G46530.1 RPP13 (RECOGNITION OF PERONOSPORA PARASITICA 13); ATP binding Confers resistance to the biotrophic oomycete, Peronospora parasitica. Encodes an NBS-LRR type R protein with a putative amino-terminal leucine zipper. Identical to Disease resistance protein RPP13 (Resistance to Peronospora parasitica protein 13) (RPP13) [Arabidopsis Thaliana] (GB:Q9M667;GB:Q9M668;GB:Q9SNC5); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G46710.1); similar to disease resistance protein (CC-NBS class), putative [Arabidopsis thaliana] (TAIR:AT3G46730.1); similar to NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81444.1); similar to NBS-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81446.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767) -0.257564264919751 -3.32874564053465 0.00971035510037503 1 4.35515672183118 16.845598461052 -0.257564264919751 0.0543882868509576
AT3G63180_at 4.64394227071937 5.47035738087729 5.39974246864187 5.48894657547786 4.69855233519909 4.49010436367873 5.88692919140804 5.65559556581334 5.56023550592102 5.17282060616481 4.5788053047898 4.73555787554447 5.46378144018114 4.820335840782 4.67795501021363 5.24402342039211 5.18259411674847 5.13359406413856 5.5303892774439 0.239363954808753 0.237206108662477 0.234885284111730 0.232983466461891 0.233429002375378 0.237411301039394 0.233648573548919 0.244905574736565 0.247039688524882 0.2398940140652 0.237774808262905 0.238240788491441 0.235069754250732 0.239150862363656 0.234611751192093 0.234642851943043 0.243222282346303 0.237585822736178 0.239949386588468 3 3 - 23347295 23347824 23347545.909 23347067 23351290 - gene protein_coding_gene FALSE TRUE AT3G63180.1|AT3G63180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22380.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84664.1) -0.418218622766463 -3.325565975698 0.0097577307068726 1 4.35072838468677 10.4171359426146 -0.418218622766463 0.153608325364366
AT3G04260_at 8.46156936753466 8.13974634362529 7.74834986508353 7.69125769677258 8.4640640066913 8.18092024782062 8.26876968451593 7.91528129323626 7.64065842924304 8.05870881361652 7.40082880454891 7.72637962034652 7.46587372394252 7.21617790755413 7.82338470534833 7.61275112522512 7.71733704901766 7.29071720465788 8.26579281336644 0.140301328097763 0.138171361175550 0.135008129749898 0.132804359790396 0.135327441076048 0.134296715713737 0.145213547218478 0.134913593445073 0.150166890661629 0.138126697415482 0.137801158746490 0.137069922162602 0.139569509432897 0.142045036056288 0.143763384529678 0.135237666976827 0.139580835305554 0.151951524123431 0.134082671122966 3 3|0 -|/ 1123256 1124090 1123496.111 1123030 1127522 - gene protein_coding_gene FALSE TRUE AT3G04260.1 PTAC3 (PLASTID TRANSCRIPTIONALLY ACTIVE3); DNA binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT2G31400.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93724.1); similar to putative DNA binding domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05531.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.31594956798228 -3.32533962741103 0.00976111243131545 1 4.35041310164787 15.8687787896544 -0.31594956798228 0.0966559494096446
AT3G26600_at 8.203708933615 8.39013830713153 8.756496250439 8.74944160253265 7.66167615617069 7.62009010080481 7.1115413525516 6.4362138538673 6.30321071952203 5.79968403950175 5.97188711052552 6.17104098322022 5.86786520781894 5.99947624506469 5.27342714123977 6.15454629595371 6.56194812035096 6.44385335996395 5.8992357371806 0.227409543002404 0.226771017698361 0.226736271647829 0.228008902779696 0.232019522897425 0.225821857636977 0.220778990325773 0.224326689394589 0.228849405207493 0.225504592265258 0.226759517879069 0.223126840840161 0.230170708115472 0.227283041762713 0.229590582522701 0.220778990325773 0.229924693472632 0.230135376094209 0.222807067747063 3 3 + 9772379 9772949 9772654.636 9770981 9773272 + gene protein_coding_gene FALSE TRUE AT3G26600.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G66200.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34223.1); similar to Os09g0536200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063784.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.358160404155595 3.32488326808057 0.00976793434296844 1 4.34977741490504 13.8942711813484 0.358160404155595 0.121459511464124
AT3G16857_at 5.44009127849227 5.71589930400867 5.46599381436265 5.53124565905662 6.27391721778544 6.21592621597796 5.38259982101447 5.51874959921794 4.93725230155793 4.74166811943327 5.01337312633173 4.89893929708885 5.68513003565785 5.22126492661549 4.27169495008263 5.23170203033267 4.90584245936496 4.56670003494787 4.76682668826943 0.175045250624654 0.173647090809332 0.177481105683337 0.178636250225371 0.180888381118364 0.181617697011958 0.173458813217596 0.174862466515187 0.171286615902087 0.180476718143736 0.179758038197960 0.183284838866110 0.176238662328823 0.178731525496719 0.188638633051053 0.175685143960076 0.183351392681658 0.178404190414311 0.184712655646938 3 3 + 5756121 5759118 5757531.75 5755877 5759449 + gene protein_coding_gene FALSE TRUE AT3G16857.1|AT3G16857.2 ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-component response regulator ARR1 (ARR1) [Arabidopsis Thaliana] (GB:Q940D0;GB:Q9LIB7;GB:Q9ZWK0); similar to ARR2 (ARABIDOPSIS RESPONSE REGULATOR 2), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT4G16110.1); similar to type-B response regulator [Catharanthus roseus] (GB:AAQ10678.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.258258773622438 3.32407703529513 0.00977999858560076 1 4.34865430985538 10.5878428107260 0.258258773622438 0.0553308530889408
AT3G20930_at 6.90932696303989 6.49075785879494 6.3626899664907 6.23038480271771 7.03994363044334 6.21150163818402 7.43958703095995 7.05445689190741 7.62594052521799 7.66439520353755 7.30615532472999 7.45484543877686 7.17614637718215 7.38798824316812 7.55902767463897 7.71607016263368 6.5191324132948 7.23748508108919 7.82171594107557 0.205860061014850 0.210633505617165 0.20755842218058 0.207337653548736 0.222470643000104 0.207371391001112 0.218009971684653 0.204978501753292 0.217732305879147 0.206564810272037 0.209540295499427 0.201903773016560 0.205966328526492 0.211227793278564 0.212709826582834 0.211509905146844 0.216704812256208 0.210424823048068 0.206151268588030 3 3|0 +|/ 7332503 7333730 7333196.111 7331731 7334035 + gene protein_coding_gene FALSE TRUE AT3G20930.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G73530.1); similar to Os02g0730800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048016.1); similar to RNA-binding re (GB:ABE80433.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.46090653027721 -3.32367016304199 0.0097860928436238 1 4.34808749560287 14.2166428791754 -0.46090653027721 0.175404890719008
AT2G40840_at 10.7219264249675 10.7591780830739 10.6924738215292 10.8039379805035 11.0288553907757 10.8272621660508 11.0895954132728 10.7470244984417 9.95395718929947 10.7533024589326 10.8960510719720 10.7254020819677 10.8378548381827 10.8992008701690 10.7238856422743 10.7830952112058 10.9930861079882 11.0951722838992 10.2547153013230 0.106578743847929 0.102394418510772 0.108617345789391 0.104962485804938 0.103882427703981 0.105154552894446 0.102394418510772 0.102587180072292 0.117139262668771 0.103700077540297 0.103992150663893 0.102641003339825 0.106371430728160 0.105690997369070 0.103273971746221 0.102394418510772 0.102465495758429 0.106011641169675 0.107044693883490 2 2|0 +|/ 17057026 17057769 17057445.875 17052041 17058025 + gene protein_coding_gene FALSE TRUE AT2G40840.1 DPE2 (DISPROPORTIONATING ENZYME 2); 4-alpha-glucanotransferase/ heteroglycan binding Encodes a cytosolic protein with transglucosidase and amylomaltase activity. It is an essential component of the pathway from starch to sucrose and cellular metabolism in leaves at night. The protein binds to heteroglycans and utilizes glucose, mannose and xylose as acceptors. Fucose and galactose can also act as acceptors but less efficiently than the previous three. It was also was also recently reported to act on maltodextrins. On the other hand, arabinose and fructose were not efficiently used. Its role probably includes metabolizing maltose exported from the chloroplast. Studies using maltose extracted from the double mutant be2-1 be3-2 showed that this enzyme is preferentially active of β-maltose. similar to DPE1 (DISPROPORTIONATING ENZYME), 4-alpha-glucanotransferase [Arabidopsis thaliana] (TAIR:AT5G64860.1); similar to putative alpha-glucanotransferase [Bacteroides fra (GB:YP_213214.1); similar to 4-alpha-glucanotransferase; disproportionating enzyme [Solanum tuberosum] (GB:AAR99599.1); similar to hypothetical protein DDBDRAFT_0185931 [Dictyostelium discoideum AX4] (GB:XP_638682.1); contains InterPro domain Glycoside hydrolase, family 77; (InterPro:IPR003385); contains InterPro domain Glycoside hydrolase, starch-binding; (InterPro:IPR002044) 0.278630715857414 3.32348927313821 0.0097888035477917 1 4.34783549125170 21.4287201373148 0.278630715857414 0.07173039718738
AT3G19400_at 7.40783567130203 7.55885974504195 7.10484022475834 7.23137107119297 7.97336117426027 7.19899477996403 7.13984523722348 6.49961573297862 7.0268688190463 6.75128772918612 8.33282341614737 8.27324702729564 7.65400379542869 7.9061694277581 7.73263262966891 7.56466771679937 6.91051447273909 7.47595382627572 7.30618760409865 0.214675890565144 0.207359463193540 0.221937442728711 0.211953358690705 0.220435216691369 0.229722706563289 0.207359463193540 0.211484666556019 0.227257404598274 0.218375527954154 0.207550264333582 0.210907603949301 0.224817772379029 0.212757180978098 0.211339008278258 0.211699101701825 0.227197653060253 0.225887614421682 0.219905479113932 3 3|0 +|/ 6726161 6726836 6726553.1 6725474 6727006 + gene protein_coding_gene FALSE TRUE AT3G19400.1|AT3G19400.2 cysteine proteinase, putative Identical to Probable cysteine proteinase At3g19400 precursor (EC 3.4.22.-) [Arabidopsis Thaliana] (GB:Q9LT77;GB:Q8GT77); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT3G19390.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60578.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.464369768738903 3.32285668098226 0.0097982893791565 1 4.34695417299839 14.6440235828191 0.464369768738903 0.177189338994708
AT2G43750_at 10.1611866037765 10.3300737328169 9.98537531892282 9.81944408550766 10.5230885231284 10.0403691883551 11.1968167142765 10.9828491452670 10.7515685468076 11.0944201636496 10.8142917898676 11.0473456745448 10.6012497379726 10.6716502981499 11.0305325928559 10.6853617365581 10.7583640688320 10.9113908307312 10.8001647019691 0.0803068968463949 0.0778171831492835 0.078696548949053 0.0842446541315673 0.077478454150182 0.0797589165118272 0.0794590176521143 0.0770000908078386 0.0844829199860519 0.0815368104138602 0.0855697772730778 0.0770000908078386 0.0787982017034219 0.0816407182797938 0.0790450528154036 0.0779987781208193 0.0810608410774176 0.0789110368134597 0.0774959650301399 2 2|0 -|/ 18136711 18138380 18137681.857 18136488 18139629 - gene protein_coding_gene FALSE TRUE AT2G43750.1 OASB (CYSTEINE SYNTHASE 1); cysteine synthase Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasB, the key enzyme for fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Identical to Cysteine synthase, chloroplast precursor (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase B) (CS-B) (OAS-TL B) (AtCS-B) (cpACS1) (At.OAS.7-4) (OASB) [Arabidopsis Thaliana] (GB:P47999;GB:O22828;GB:Q42568); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.3); similar to chloroplast cysteine synthase GCS2 [Allium sativum] (GB:AAX07221.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) -0.321345033171075 -3.32255147905105 0.00980286938482966 1 4.34652895286969 21.2284376533386 -0.321345033171075 0.100141115318997
AT1G27970_at 9.24438583687959 9.30223409013916 9.60378254807181 9.76123030738323 9.25716498544884 9.30261849276454 9.52905286651106 9.74598464280106 9.06457163027836 9.12391705119267 9.5447381631073 9.36305570457933 9.43499678470006 9.42690399662562 9.53328938381308 9.56596140325522 9.44452275172065 9.57726725393207 8.84556929264125 0.110683417878303 0.106850334236435 0.117091368986876 0.109846056724143 0.110085672075339 0.117738255600354 0.112488099035070 0.109735218344133 0.125525294754847 0.113418659138897 0.108015168989886 0.111302240705936 0.109024654667070 0.112150707451719 0.105571607356575 0.106081771092843 0.116060886766509 0.111195389269888 0.115627153475263 1 1 + 9746924 9747720 9747136.545 9746798 9748451 + gene protein_coding_gene FALSE TRUE AT1G27970.1|AT1G27970.2 NTF2B (NUCLEAR TRANSPORT FACTOR 2B); Ran GTPase binding / protein transporter|NTF2B (NUCLEAR TRANSPORT FACTOR 2B) Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. Identical to Nuclear transport factor 2 (NTF-2) (NTF2) [Arabidopsis Thaliana] (GB:Q9C7F5); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); similar to ADR013Wp [Eremothecium gossypii] (GB:NP_984109.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075)|Identical to Nuclear transport factor 2 (NTF-2) (NTF2) [Arabidopsis Thaliana] (GB:Q9C7F5); similar to NTF2A (NUCLEAR TRANSPORT FACTOR 2A), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27310.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to nuclear transport factor 2 [Asper (GB:XP_001213756.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) 0.250386998256816 3.32223435902443 0.00980763061868526 1 4.34608711609081 18.7171540153770 0.250386998256816 0.0481022346967551
AT1G70940_at 6.41278522592925 6.6768873289598 5.97505617718715 5.36718934533206 7.11229789355043 6.01403761316557 7.97623742048098 8.06608349865826 9.07867862700307 7.76357263085462 8.8849620335914 9.09214184586243 8.70231732846878 8.51874960100106 8.77162876950363 8.8793125431607 8.06454998692438 8.00782280922794 8.85062605735622 0.226389461692478 0.208828123923183 0.225159897390968 0.244461414492032 0.206456054453262 0.228796703989279 0.210310522941929 0.203154335474343 0.225722733663911 0.207747382615068 0.212293408106379 0.203154335474343 0.203154335474343 0.208196281007849 0.218196731911390 0.205504636867598 0.203630044710277 0.210537132684941 0.205572060235963 1 1|0 +|/ 26748242 26749493 26748887.111 26746716 26750057 + gene protein_coding_gene FALSE TRUE AT1G70940.1 PIN3 (PIN-FORMED 3); auxin:hydrogen symporter/ transporter A regulator of auxin efflux and involved in differential growth. PIN3 is expressed in gravity-sensing tissues, with PIN3 protein accumulating predominantly at the lateral cell surface. PIN3 localizes to the plasma membrane and to vesicles. In roots, PIN3 is expressed without pronounced polarity in tiers two and three of the columella cells, at the basal side of vascular cells, and to the lateral side of pericycle cells of the elongation zone. PIN3 overexpression inhibits root cell growth. Protein phosphorylation plays a role in PIN3 trafficking to the plasma membrane. Identical to Auxin efflux carrier component 3 (AtPIN3) (PIN3) [Arabidopsis Thaliana] (GB:Q9S7Z8); similar to PIN7 (PIN-FORMED 7), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G23080.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G01420.2); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.557479967442686 -3.32205526226428 0.00981032064596073 1 4.34583757893704 15.2898108394690 -0.557479967442686 0.222528378482211
AT1G27595_at 5.74083547802789 5.94242114173136 5.01602116052522 5.12497176734001 5.76319308448268 5.60483202545072 5.29657723567673 5.79468448645136 4.85079559173907 4.60605523700801 4.49119432263019 4.85337977906098 4.50858216102802 4.53108834229304 3.97350370340991 4.68981015857918 5.20328028485733 4.12155771764017 5.14706230545252 0.238474041528295 0.237700919939834 0.239324242699318 0.241945345650027 0.244986759793866 0.239535650612792 0.243041417378809 0.246513354439985 0.258462747226986 0.238144067250138 0.238618233191666 0.24068058212736 0.238805919913905 0.23601708224947 0.251489090508834 0.236238303805043 0.245117205629708 0.240633546802657 0.238280947319209 1 1|0 +|/ 9600940 9602869 9602210.889 9596347 9603242 + gene protein_coding_gene FALSE TRUE AT1G27595.1 similar to ESP4 (ENHANCED SILENCING PHENOTYPE 4), binding [Arabidopsis thaliana] (TAIR:AT5G01400.1); similar to Os07g0693900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060734.1); similar to symplekin [Xenopus tropicalis] (GB:NP_989259.1); contains domain ARM repeat (SSF48371); contains domain gb def: T22C5.3 (PTHR15245:SF6); contains domain FAMILY NOT NAMED (PTHR15245) -0.318898281034014 -3.32052261122921 0.00983337269489671 1 4.34370196471183 10.2427023491710 -0.318898281034014 0.0987619301538586
AT2G03310_at 10.0662599103995 10.1929226520845 10.3782143232816 10.4316183456369 10.9607327661281 10.6516876365064 10.5879819874691 10.4578896229389 9.71966471410079 10.0497843744342 10.1078233809874 9.65803507889445 10.238290831098 10.1062930280873 9.8868718766588 10.0820491460171 10.5452119625366 10.1175499640810 9.74695417359012 0.0940642666980126 0.0917126858500341 0.0940613357457707 0.0906683363307318 0.0920407543390107 0.0960031598565179 0.0944756708015951 0.095639462805717 0.0941992679665223 0.0993105145591535 0.0939457894850137 0.0984156576132085 0.0907251595311254 0.092564412805257 0.100457356660684 0.0906683363307318 0.0967038068949734 0.099538073690067 0.0990702767758184 2 2 - 1006723 1007014 1006865.091 1006253 1007180 - gene protein_coding_gene FALSE TRUE AT2G03310.1 unknown protein 0.266632147917637 3.31962361098228 0.00984692066919402 1 4.34244915590077 20.4316967785157 0.266632147917637 0.0627137196880068
AT3G08640_at 9.18205137371696 9.29661458680789 9.14545197055067 9.19109772514336 9.03986085929924 8.96401755757788 8.9909007658992 9.02131634858103 8.67794839153391 8.4548976424532 9.30145481172132 9.29083904112613 9.01130447379224 8.59172810963382 8.8880365864078 8.55689289837654 8.79321316628436 8.94738810793826 8.129690297326 0.134409609990417 0.130604643262579 0.135455182364930 0.130992910899293 0.140537845944001 0.136132988342245 0.135427784203506 0.130604643262579 0.138940444517937 0.144020182333672 0.135832978833748 0.130699896337353 0.137769097879691 0.150750504469066 0.134223279263861 0.141424904845338 0.134751675108244 0.134405659432636 0.142679623370290 3 3 + 2623492 2623922 2623678.909 2622886 2624314 + gene protein_coding_gene FALSE TRUE AT3G08640.1 alphavirus core protein family similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G08630.1); similar to Os01g0812900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044596.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68215.1); similar to P0432B10.9 [Oryza sativa (japonica cultivar-group)] (GB:BAB90391.1) 0.232073982515270 3.31859213703541 0.0098624891551662 1 4.34101161800016 17.7756401950376 0.232073982515270 0.0256013181274399
AT4G00630_at 8.4174088091463 8.50377473690783 8.32616819803192 8.32956153394097 8.60951054373486 7.89078532038598 9.5236774962798 9.24793657922653 8.39037509401544 8.344160366776 8.00153466818697 7.95354484511062 8.18790654352101 8.06311571437675 8.0815189361479 8.51050982225221 8.48110190903391 7.96211508919222 8.11009994982937 0.159699887494742 0.155231634136674 0.161008233117066 0.160609360766498 0.156489265423265 0.173950597637254 0.169990127917232 0.15864978059323 0.159765150975093 0.158254660529017 0.165371068828904 0.163053881019033 0.157370763685779 0.168034994704392 0.159532360797549 0.162801789651598 0.172803153595668 0.166458994242370 0.159317661141934 4 4|0 -|/ 261655 263039 262246.556 261655 265958 - gene protein_coding_gene FALSE TRUE AT4G00630.1 KEA2 (K+ efflux antiporter); potassium:hydrogen antiporter member of Putative potassium transporter family similar to KEA1 (K EFFLUX ANTIPORTER 1), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G01790.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); similar to Os04g0682800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054299.1); similar to TrkA-N [Medicago truncatula] (GB:ABD28435.1); contains InterPro domain Potassium efflux system protein; (InterPro:IPR004771); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain TrkA-N; (InterPro:IPR003148) -0.380284851131295 -3.31793570737834 0.00987241037834958 1 4.3400967030399 16.8244596911324 -0.380284851131295 0.134055339402327
AT2G36060_at 10.2036692091106 10.2333492676345 10.4511974725423 10.5143800506103 10.7392993417662 10.4808336765315 10.014542099889 9.86086070998921 10.4062048404555 10.0770619045226 10.3842434525311 10.0953966387680 10.2356353817309 10.2474906118992 10.115864764016 10.3926252794309 10.2789065990815 10.3066650464581 10.1595608807888 0.09889705510667 0.0972327755905811 0.098122494917689 0.101762350564048 0.0998999639368636 0.106429725825663 0.0992959932286111 0.0951765077298036 0.102227797800326 0.0979280399882086 0.0971632732223722 0.0964394081528789 0.0935046381767987 0.0985060539473376 0.099933284661762 0.0983603829828134 0.110944929450989 0.10210249691126 0.103120446595462 2 0|2 /|- 15150117 15150673 15150388.125 15149756 15151261 - gene protein_coding_gene FALSE TRUE AT2G36060.1|AT2G36060.2|AT2G36060.3 MMZ3 (MMS ZWEI HOMOLOGE 3); ubiquitin-protein ligase|MMZ3 (MMS ZWEI HOMOLOGE 3) similar to MMZ4 (MMS ZWEI HOMOLOGE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G52560.1); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ4 (MMS ZWEI HOMOLOGE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G52560.2); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608)|similar to MMZ4 (MMS ZWEI HOMOLOGE 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G52560.1); similar to Os09g0297100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062804.1); similar to ubiquitin-conjugating enzyme family protein-like protein [Solanum tuberosum] (GB:ABA40444.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.255574955095279 3.31680846631412 0.00988947184033277 1 4.3385254628266 20.5479561520067 0.255574955095279 0.0534218972871852
AT1G18260_at 8.2045029527938 8.41368037036506 8.73146294131434 8.55147455920802 8.40792325694557 8.42719917650154 7.36346871945421 7.64898334636774 7.98119841184563 7.49493820799662 7.55257866894607 7.58171208506114 7.90965781235614 7.56082841568421 7.4973761970249 7.73903555416208 7.69673919094066 7.80398874780379 7.74812352200094 0.154592517807409 0.155669144662128 0.153757212599826 0.156781251968278 0.150750312275985 0.163186985312146 0.153480681927697 0.153601723195288 0.151430890897126 0.158209316119835 0.155637592900263 0.149468255342157 0.159629991983964 0.157239419216746 0.150889024554006 0.149159133613650 0.165671426274957 0.151939772934511 0.152900442658931 1 1|0 -|/ 6279059 6279837 6279406.7 6278841 6282096 - gene protein_coding_gene FALSE TRUE AT1G18260.1 suppressor of lin-12-like protein-related / sel-1 protein-related similar to suppressor of lin-12-like protein-related / sel-1 protein-related [Arabidopsis thaliana] (TAIR:AT1G73570.1); similar to Os03g0259300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049611.1); similar to SEL-1 [Glycine max] (GB:BAE02648.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.27408783648174 3.31594098476216 0.0099026227474107 1 4.33731619309779 15.923166731008 0.27408783648174 0.0687968304360566
AT4G02050_at 7.05729922191635 7.6305848258181 7.01388541474039 7.34117294453502 7.79997669583075 7.04210849430707 6.68288092029983 6.53158121755776 5.55688282943912 6.2407869391086 4.32491730582459 4.03953940328308 5.30681222859128 4.90265481694385 3.64722369177919 4.35449305288775 5.28441715624546 4.62595860091177 5.61983499269954 0.283503344395444 0.277264281357385 0.293278052202427 0.276170810500347 0.276170810500347 0.289083173011698 0.277095488824994 0.276170810500347 0.301739889096121 0.284426177232331 0.277264773824002 0.278530653420105 0.284734379138434 0.277107367331209 0.284782670962586 0.276170810500347 0.291201289145312 0.291054064790531 0.285943980415453 4 4 - 898505 898952 898719.273 898307 900816 - gene protein_coding_gene FALSE TRUE AT4G02050.1 sugar transporter, putative Identical to Sugar transport protein 7 (Hexose transporter 7) (STP7) [Arabidopsis Thaliana] (GB:O04249;GB:O04262;GB:O81705); similar to MSS1 (SUGAR TRANSPORT PROTEIN 13), carbohydrate transporter/ hexose:hydrogen symporter/ high-affinity hydrogen:glucose transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G26340.1); similar to hexose transporter 7 [Vitis vinifera] (GB:AAX47308.1); similar to putative hexose transporter [Vitis vinifera] (GB:AAT09977.1); similar to Sugar carrier protein A (GB:Q10710); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.460691773701045 -3.31514232648966 0.00991474652218525 1 4.33620278358325 12.3207296931127 -0.460691773701045 0.175889385812256
AT1G27690_at 6.20604249718732 6.6361037044729 5.69546269844206 5.9219641874491 6.4330799751211 6.4935033355809 6.19599734422046 6.68357101444899 6.30117071310999 5.9893899045181 5.8727227477027 5.85881324927574 5.89011610480873 6.08067092384069 5.88958269043456 6.1660706812891 5.61604900395669 5.78180207465226 6.63175121613415 0.232900533705037 0.22406513023797 0.239631515659946 0.238157207628814 0.22406513023797 0.23514909341902 0.229662119448195 0.22406513023797 0.243653965366978 0.227849475581811 0.22406513023797 0.22406513023797 0.232964651259312 0.22406513023797 0.228774453130745 0.230034620896134 0.232579764598399 0.228979264960779 0.229878037232868 1 1 + 9637638 9638237 9637991.727 9636581 9638564 + gene protein_coding_gene FALSE TRUE AT1G27690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19540.1); similar to Protein of unknown function DUF620 [Medicago truncatula] (GB:ABD33276.1); contains InterPro domain Protein of unknown function DUF620; (InterPro:IPR006873) -0.353692467179908 -3.31403139855050 0.00993163650348317 1 4.33465391233317 12.3841734508233 -0.353692467179908 0.119600009130072
AT4G15010_at 5.53879940093754 5.56062140741173 6.18600616305936 6.03522749566511 5.23750910197732 5.47396873344908 4.62622796921752 4.66574691408409 4.26211264861944 4.35140933967464 3.95230675374714 4.28681275804687 4.15147109553561 4.27163810250565 4.27449729344816 4.05212429633334 4.75007775040455 4.42799177389489 4.60028934477055 0.214810882185122 0.218126887576716 0.213732734166036 0.218100530337535 0.212385596190525 0.217708076675684 0.214685179767206 0.211516335094542 0.219062494717655 0.210459987990159 0.212210138258819 0.209961734048534 0.225231160149808 0.213731313916858 0.210068284501093 0.20857119344871 0.214336885712403 0.21386430992911 0.210556812320112 4 4|0 -|/ 8573124 8573869 8573536 8572901 8575227 - gene protein_coding_gene FALSE TRUE AT4G15010.1|AT4G15010.2|AT4G15010.3 mitochondrial substrate carrier family protein similar to SAMC2 (S-adenosylmethionine carrier 2), binding [Arabidopsis thaliana] (TAIR:AT1G34065.1); similar to hypothetical protein DEHA0C15268g [Debaryomyces hansenii CBS767] (GB:XP_458298.1); similar to OSJNBa0038O10.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE05654.2); similar to Os04g0527500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053368.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.250795075463155 3.31343757903101 0.00994067700725003 1 4.33382594050712 9.75324777606409 0.250795075463155 0.0491564539492763
AT2G46220_at 11.7547042412413 12.2011136241804 11.7821276494830 11.7823058162006 12.2056027002757 12.0695805943544 12.3460510050371 12.5923341100712 12.2941559812807 12.6110675007482 12.1727700058997 12.1241821355009 12.2058067157480 12.1002958069585 11.7081122953382 12.1487227452125 11.9943221404990 12.2826879960146 12.4177550303912 0.109274566364864 0.101709981711656 0.107481413322398 0.108344762790960 0.101709981711656 0.103491758810497 0.101709981711656 0.102587036118409 0.114042791476271 0.101709981711656 0.103437224902532 0.101709981711656 0.101709981711656 0.108377827061183 0.101824005529735 0.101709981711656 0.108597742438377 0.104775158947179 0.102094654747385 2 2 + 18986888 18987599 18987313.182 18986544 18987843 + gene protein_coding_gene FALSE TRUE AT2G46220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16320.1); similar to hypothetical protein Npun02005080 [Nostoc punctiforme PCC 73102] (GB:ZP_00108317.1); similar to Os05g0215600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054933.1); similar to Os04g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053853.1); contains domain NTF2-like (SSF54427) -0.306263456190492 -3.31227921574378 0.00995833716158342 1 4.33221069558726 24.3582801264154 -0.306263456190492 0.0913162662568316
AT1G74410_at 7.9746713898177 8.15160319784526 8.50813224893023 8.2982416043341 8.40864531341652 8.28757423415536 6.8180987291574 7.37590438630573 6.08544893020049 6.13421037653619 5.9177327132703 4.85921132301758 5.78860902505389 5.93632528578213 5.31753357256571 6.07939401404782 7.17780201193722 6.01766846908452 5.81055602272128 0.201605583245285 0.204048547798765 0.202803960886189 0.203790468603666 0.205038352028362 0.213746104008101 0.205055586166103 0.206024725649142 0.205363059438678 0.207029435344524 0.202707116623677 0.203127940699701 0.207723129487664 0.201605583245285 0.213900779006531 0.201605583245285 0.201605583245285 0.205415872015375 0.201605583245285 1 1|0 +|/ 27969475 27971306 27970378.2 27969212 27971587 + gene protein_coding_gene FALSE TRUE AT1G74410.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL1Q (ATL1Q) [Arabidopsis Thaliana] (GB:Q8LBA0;GB:Q94A26;GB:Q9CA72); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G66070.1); similar to Os06g0231600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057223.1); similar to putative NEP1-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16113.1); similar to Os02g0743700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048097.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.336145849893222 3.31218355221653 0.00995979709717481 1 4.33207729331085 13.9262870521607 0.336145849893222 0.109608554267560
AT4G32660_at 8.16600535620862 7.92277161379924 7.95398608796676 7.70598987881675 8.2769603679432 7.84835321185033 8.37707088329446 8.11320787378945 8.33679489292333 8.40672441336974 7.90511129172464 7.85329401688502 7.818659466936 7.8605744862 7.8485988613943 8.00481893023108 7.82250680173495 7.88858209602758 8.26509118301298 0.122168664795356 0.118310588334433 0.124325194121239 0.120582602061647 0.123166240898581 0.125662426632894 0.123621967532784 0.121867906256672 0.119888052992411 0.123670537869535 0.116697180319650 0.120578886316738 0.117908455813567 0.123269664476628 0.131406421366022 0.118118866362507 0.125775679959234 0.124259619194464 0.122300358016381 4 4|0 +|/ 15758175 15759069 15758608.111 15756133 15759319 + gene protein_coding_gene FALSE TRUE AT4G32660.1|AT4G32660.2|AT4G32660.3 AME3; kinase Encodes protein kinase AME3. Identical to Serine/threonine-protein kinase AFC3 (EC 2.7.12.1) (AFC3) [Arabidopsis Thaliana] (GB:P51568;GB:Q39185); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase (GB:AAA57119.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to Serine/threonine-protein kinase AFC3 (EC 2.7.12.1) (AFC3) [Arabidopsis Thaliana] (GB:P51568;GB:Q39185); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase (GB:AAA57119.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.329688398836168 -3.31144958995834 0.00997100567750352 1 4.33105375064454 16.1512790293721 -0.329688398836168 0.105831459775581
AT4G23885_at 6.25504314706056 6.36028987181154 7.1763235479366 6.80944526549984 6.21502424062194 5.22196432376254 4.59418128005243 4.73525345035658 4.89392444432732 4.27422745868488 4.69101307138804 4.43585803620139 4.29410689899975 4.3847558924748 4.6763505315904 4.31675781421527 4.48801247184421 4.68720907799654 4.05367408707404 0.273097946028885 0.274063603572178 0.279835385917521 0.28423569217751 0.274109992270138 0.262049758505390 0.259648038329726 0.257035599865913 0.263434987753353 0.263287725430668 0.261262145705484 0.257035599865913 0.258273390877983 0.257035599865913 0.258086335969145 0.259291823666519 0.264302310310797 0.266120337061377 0.257259328806226 4 4|0 +|/ 12419493 12420003 12419811 12419404 12420477 + gene protein_coding_gene FALSE TRUE AT4G23885.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24165.1) 0.479490025722507 3.30842674643334 0.0100173081504693 1 4.32683758751034 10.3729572930715 0.479490025722507 0.185721270513840
AT4G39990_at 6.78061344082706 7.1115108002192 6.65681588006274 6.8640621499309 7.44880372089484 7.09100784072799 7.7921899786219 8.08866194252447 8.20143681956208 7.9011591795804 8.52082850046313 8.0437529745651 8.12340944885385 7.94012046678475 7.94286125830416 7.17102529389376 7.0253950284758 7.56534209258485 7.95610065430932 0.157040771359108 0.149668424042096 0.157816720899872 0.159089338545526 0.153244535513599 0.159442278142338 0.16678406312847 0.155141734828412 0.157129666663381 0.1548345301095 0.150069953450324 0.156008497267657 0.153751138788583 0.155014945825414 0.153412136572491 0.16014164567144 0.158992662728414 0.158392962139148 0.147610021521834 4 4 + 18542805 18543745 18543447.455 18542545 18543972 + gene protein_coding_gene FALSE TRUE AT4G39990.1 ATGB3 (GTP-BINDING PROTEIN 3); GTP binding GTP-binding protein ATGB3 similar to AtRABA4a (Arabidopsis Rab GTPase homolog A4a), GTP binding [Arabidopsis thaliana] (TAIR:AT5G65270.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02110.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.328022655401981 -3.30815687746365 0.0100214528243461 1 4.32646113037596 15.1347869362968 -0.328022655401981 0.105031150572987
AT2G38040_at 9.67116573353116 9.71596817510503 9.34749963291342 9.2407600235834 9.96233022391402 9.802730957634 9.98295426306151 9.9312381776779 9.93797629968002 10.0588438461837 9.95749844839133 9.79406089722509 9.849898130788 9.70620173614031 9.64556896996546 9.58676621567472 9.59182355206961 9.93279863032584 9.99290997822865 0.0698224483652712 0.0692355090971275 0.0695150262295178 0.0701932953130448 0.0712404146249192 0.0693033529015298 0.0684234020983528 0.0729076809401224 0.0773973085042778 0.0691305933382384 0.0755547243762354 0.0681257262281662 0.0701091321742102 0.0708083789471905 0.0802771327476295 0.067823425470358 0.0710224676178189 0.0730170135528656 0.0705297820118913 2 2 + 15927255 15927797 15927484.091 15924171 15928248 + gene protein_coding_gene FALSE TRUE AT2G38040.1|AT2G38040.2 CAC3 (acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit); acetyl-CoA carboxylase encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesis similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38580.1); similar to chloroplast carboxyltransferase alpha subunit [Brassica napus] (GB:AAS46759.1); similar to carboxyl transferase alpha subunit [Glycine max] (GB:AAF80496.1); similar to alpha-carboxyltransferase aCT-1 precursor (GB:AAB03852.1); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763); contains InterPro domain Acetyl-CoA carboxylase, alpha subunit; (InterPro:IPR001095) -0.237750506645467 -3.30629460793395 0.0100501028080893 1 4.3238630986787 19.5841577887292 -0.237750506645467 0.0352739075965324
AT2G41500_at 6.12115754964144 6.15655195059067 6.11522812453372 6.03894933483258 6.61820032453006 7.04221161194096 5.5874476871692 5.42619677095339 4.58996442048201 5.1974237213703 4.55244453911286 4.81168648397883 5.19724956474801 4.95962687218014 5.01762422518068 5.56434558677789 5.61073157439265 5.41168872311277 5.79648865304963 0.213238094889273 0.212284449241965 0.209747196458573 0.214332693071525 0.215043427075936 0.21291333994868 0.211511074957543 0.214825765672569 0.216715274320717 0.211412379240427 0.212724644469929 0.209747196458573 0.225520254255055 0.214854007623235 0.212791932678848 0.211809588350990 0.221967751138476 0.211389915340664 0.214176241121425 2 2|0 -|/ 17311462 17312112 17311789 17311208 17314504 - gene protein_coding_gene FALSE TRUE AT2G41500.1 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related Identical to U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Arabidopsis Thaliana] (GB:O22212;GB:Q7GAP3;GB:Q7Y1Z3); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G05720.1); similar to hypothetical protein LOC508735 [Bos taurus] (GB:NP_001029502.1); similar to Os03g0355200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050132.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Splicing factor motif; (InterPro:IPR003648) 0.288428978627742 3.30544220750236 0.0100632451580958 1 4.32267378726422 11.3058930665171 0.288428978627742 0.0798415495115029
AT4G35260_at 9.88880068105502 9.91819892581323 10.2138498756594 10.1992822316670 10.0310757863323 9.67335938529525 9.9793628015245 9.84148411917227 8.97655116952116 9.0259190169478 9.4013256538324 9.34166494131435 9.261371892709 9.37862335089982 9.34644629021861 9.36881161993818 9.33658222213366 9.15544124637214 8.71443942514828 0.0841161907455767 0.0823319592900289 0.0840181810461604 0.0852397679198004 0.0847927439736144 0.085142719928304 0.0886797513006302 0.0837189678499604 0.0929142143142538 0.0889616514459223 0.084319126782521 0.0836256986910338 0.0864887381427056 0.0893426371502022 0.0872506711680875 0.0823319592900289 0.094730314683020 0.0947063258784968 0.0886591814797998 4 4|0 -|/ 16774510 16775582 16775055.4 16774200 16776330 - gene protein_coding_gene FALSE TRUE AT4G35260.1 IDH1 (ISOCITRATE DEHYDROGENASE 1); isocitrate dehydrogenase (NAD+) NAD+ dependent isocitrate dehydrogenase subunit 1 (IDH1) Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 1) (NAD(+)-specific ICDH 1) (IDH-I) (IDH1) [Arabidopsis Thaliana] (GB:Q8LFC0;GB:O65501;GB:P94015;GB:Q7DM90); similar to IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT2G17130.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.270288526409372 3.3046260983716 0.0100758448545688 1 4.32153503076793 19.0828866955064 0.270288526409372 0.0665862598075542
AT3G09390_at 11.7925675166048 11.8419664016862 12.1238712322444 12.1228027208443 11.9379508209056 12.1053869377914 10.9759859821475 11.3624282588189 10.6666491129008 11.2281860649471 10.7938724013706 10.2238672683116 11.4499576561352 11.1520415484386 10.0703515893826 11.1869274772117 11.7634977336094 10.7524383216485 10.9396229459128 0.0894723755645331 0.0906863514688856 0.0885374255734567 0.0888214379225238 0.089511478918994 0.0917039403547239 0.090371424488172 0.08955933574188 0.0942310757500043 0.0908304884804348 0.0938193314522215 0.104550488591495 0.0893109662855993 0.0937338668450593 0.105200074905175 0.0899706594932352 0.0944393396683497 0.0925974606332123 0.0887693445564165 3 3 - 2889747 2890166 2889914.182 2889492 2890235 - gene protein_coding_gene FALSE TRUE AT3G09390.1 MT2A (METALLOTHIONEIN 2A) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage Identical to Metallothionein-like protein 2A (MT-2A) (MT-K) (MT-1G) (MT2A) [Arabidopsis Thaliana] (GB:P25860;GB:P43391); similar to MT2B (METALLOTHIONEIN 2B) [Arabidopsis thaliana] (TAIR:AT5G02380.1); similar to Metallothionein-like protein type 2 (GB:P69164); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347) 0.279282881529347 3.30453035129745 0.0100773241525543 1 4.32140142509089 22.7173392959306 0.279282881529347 0.0733829069598279
AT3G61880_at 6.93497085914355 7.6304688370356 8.24941539572254 8.79544392978335 8.50877491588617 8.6549214344055 7.81039755191262 8.56418716466746 6.95835245222152 7.79683156865241 7.26156609622642 5.67505923947009 8.37965933844431 7.87417823492523 4.99496838042515 8.28598774755751 9.26459098322744 7.6580477304177 6.88933592483971 0.236426036306843 0.227317274208849 0.232031256857782 0.229390664575476 0.232387662954172 0.236904245050948 0.238374842046372 0.230515880485700 0.240389004578046 0.227317274208849 0.227317274208849 0.230568102702077 0.227317274208849 0.236675762458386 0.246710154835681 0.227317274208849 0.238122158117313 0.231841069719573 0.233904349857462 3 3 - 22917095 22917556 22917288.455 22916843 22918933 - gene protein_coding_gene FALSE TRUE AT3G61880.1 CYP78A9 (CYTOCHROME P450 78A9); oxygen binding Encodes a cytochrome p450 monooxygenase. Overexpression of this gene allows fruit growth independently of fertilization. The gene is normally expressed only in floral organs(during the Arabidopsis stage 14 flower) and in the funiculus at anthesis. similar to CYP78A8 (cytochrome P450, family 78, subfamily A, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01190.1); similar to CYP78A6 (cytochrome P450, family 78, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G46660.1); similar to Cytochrome P450 78A3 (GB:O48927); similar to cytochrome P450 monooxygenase CYP78A29 [Medicago truncatula] (GB:ABC59089.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.513275026345881 3.30370900681858 0.0100900233332034 1 4.32025527472189 15.4631211114402 0.513275026345881 0.202660398781608
AT4G19640_at 10.9661216556078 10.9596213867549 11.3371088729699 11.2718804181321 11.4564187052054 11.2258211002389 10.789359607306 10.7883116777395 10.5942408810748 10.6237493375745 10.6012057509941 10.4669864519841 10.8064743880871 10.6887898211635 10.3219682028484 10.7276016094387 10.6505153016780 10.6249664583812 10.5003737350043 0.0747150704663764 0.0722965070927082 0.0739644376249528 0.074620555000861 0.073659650662415 0.0745596912959081 0.0755104617157607 0.0740133883836816 0.0781435549279612 0.0750692458350807 0.0743907638959914 0.0722965070927082 0.0722965070927082 0.0740130444667738 0.0747592646744251 0.0722965070927082 0.0785859698968519 0.073402633924575 0.075729447072016 4 4|0 -|/ 10687454 10689021 10688407.1 10687208 10689621 - gene protein_coding_gene FALSE TRUE AT4G19640.1 ARA7; GTP binding Encodes Ara7. similar to RHA1 [Arabidopsis thaliana] (TAIR:AT5G45130.1); similar to ras-related GTP-binding protein [Nicotiana tabacum] (GB:CAA50609.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.242614602902619 3.30218791455337 0.0101135859656160 1 4.31813244660745 21.6912561693058 0.242614602902619 0.0414874360206594
AT2G40610_at 10.3868689468009 10.5378572173878 9.7072198628245 9.67416847035776 10.2833504550605 10.3654285424474 10.2616361859512 10.5761730152604 10.9333414617535 10.9295624655054 11.0651462920806 11.5108271298473 11.7184048180484 10.9795642255407 11.4594197935964 11.6956855191758 10.6203105808674 10.8811974372313 12.1496246281187 0.077185676863855 0.0765741655047728 0.0754335389736442 0.0780817373603416 0.0754218860616035 0.0766334324250496 0.0776676340847187 0.0755759457877928 0.0839734938326617 0.0777383652317094 0.075170349018953 0.075170349018953 0.0777795282923064 0.0816052216506331 0.0762648241262867 0.075170349018953 0.0877358105181504 0.0823308776688285 0.0757553069856398 2 2 - 16956230 16957230 16956561.636 16955941 16957635 - gene protein_coding_gene FALSE TRUE AT2G40610.1 ATEXPA8 (ARABIDOPSIS THALIANA EXPANSIN A8) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A8 precursor (AtEXPA8) (Alpha-expansin-8) (At-EXP8) (AtEx8) (Ath-ExpAlpha-1.11) (EXPA8) [Arabidopsis Thaliana] (GB:O22874); similar to ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) [Arabidopsis thaliana] (TAIR:AT5G05290.1); similar to expansin [Vitis labrusca x Vitis vinifera] (GB:BAC66695.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) -0.264641026294115 -3.30129277587727 0.0101274791601076 1 4.31688306843267 21.5135023335151 -0.264641026294115 0.0622900837506707
AT2G21560_at 5.07008473590165 5.15467594177228 5.48732575123654 5.43427992545967 5.24194401930214 5.63949093867953 6.99222973563857 6.7471101234046 5.96391451295087 7.3991988828044 6.70951027123937 7.17551391954284 6.74681035124803 6.32152567383653 6.0265869898145 7.18506640213353 6.93159717980938 6.80191823943357 6.98089054142884 0.218227501762381 0.219068807683286 0.221276856849901 0.219215420951931 0.219058763056234 0.218413767389854 0.233608568453747 0.231802850331876 0.225061023342717 0.215034644641756 0.219225909371666 0.220592144581064 0.215858212394889 0.218215298454598 0.216837424860128 0.225036555578720 0.22966184982699 0.213567738256381 0.225108626280313 2 2 - 9237616 9238128 9237852.545 9237348 9238588 - gene protein_coding_gene FALSE TRUE AT2G21560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39190.1); similar to LOC402866 protein [Danio rerio] (GB:AAH57473.1) -0.292141746427810 -3.30120965497433 0.0101287702710856 1 4.31676704872328 12.4802180334795 -0.292141746427810 0.0826499923629793
AT3G13580_at 8.14735822171874 8.54739767440118 7.77893007068283 7.95072218408286 8.7635636804775 8.3914081670843 8.38316100203833 8.4643502661931 8.22364887253295 7.95026018620839 7.74154607860623 7.98149965626658 7.68868864476289 7.91207693130545 8.06271096905079 7.45789371907498 7.27670275149469 7.46509169116148 8.3400438066183 0.14522344276726 0.14522344276726 0.150361357365841 0.152891134689795 0.14919948962738 0.156556420490928 0.152732957544913 0.146776703519469 0.163800287368365 0.161658488820021 0.152469758704152 0.150466397552256 0.150077461569393 0.154287526484722 0.147545993073263 0.14522344276726 0.164664795965583 0.149363919573720 0.153234294111558 3 3|0 +|/ 4433956 4435078 4434640.3 4433054 4435312 + gene protein_coding_gene FALSE TRUE AT3G13580.1|AT3G13580.2|AT3G13580.3 60S ribosomal protein L7 (RPL7D) Identical to 60S ribosomal protein L7-4 (RPL7D) [Arabidopsis Thaliana] (GB:Q9LHP1); similar to 60S ribosomal protein L7 (RPL7B) [Arabidopsis thaliana] (TAIR:AT2G01250.1); similar to ribosomal protein L7 (GB:1909359B); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998) -0.318726041038564 -3.2960267209917 0.0102096182333239 1 4.30953113302417 16.2381583718358 -0.318726041038564 0.100108124383563
AT4G12980_at 9.28108471762352 9.5895843844768 9.23985167898543 9.08877852450234 9.70893067461643 9.45645558196422 10.8337109555955 11.0350338823346 10.1603415993553 10.3116638050476 10.5759062123990 10.4846589359618 10.8942127055970 10.6564240858301 10.2657450940356 10.8245704900770 10.2836756814572 10.0319407749623 10.3408994344838 0.102162561610800 0.096562393780720 0.104745921848869 0.102820841394128 0.0980943133182408 0.104403303852641 0.101829696285162 0.0983976876410999 0.109612751002413 0.101925443888464 0.096562393780720 0.096562393780720 0.0985411675733527 0.107992208371502 0.106326651036727 0.096562393780720 0.122483002143318 0.107747848559388 0.0971323635917655 4 4|0 -|/ 7589676 7590427 7589994.8 7589392 7591099 - gene protein_coding_gene FALSE TRUE AT4G12980.1 auxin-responsive protein, putative similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G25290.2); similar to hypothetical protein 26.t00022 [Brassica oleracea] (GB:ABD65002.1); similar to Os03g0194900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049254.1); similar to Os08g0524200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062286.1); contains InterPro domain Protein of unknown function DUF568, DOMON-like; (InterPro:IPR007613); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593) -0.290087951039697 -3.29553407861041 0.0102173380305969 1 4.30884318890711 20.1657338135968 -0.290087951039697 0.0815874716001442
AT3G61540_at 8.23651614046822 8.36007235606002 8.40292063801975 8.23617943065588 8.26678156855635 8.31100570799786 6.8928747269903 6.96675233600084 8.0099142213994 7.4511073962923 7.44447050085276 7.3016045225964 7.36350983079595 7.87167049914154 7.29718686551444 7.53315740282566 7.09815815366063 7.56127840193465 7.47190690928053 0.199914879207016 0.198835649585366 0.200650771434537 0.198390997705063 0.196361284305189 0.198573627319448 0.200700514480644 0.203850767557664 0.211052825858230 0.197152602171044 0.195343337010424 0.197788535086476 0.192900759191789 0.200031375077890 0.201701900760151 0.192964973335652 0.208851167180339 0.203819665205635 0.197081424066439 3 3|0 +|/ 22785657 22786585 22786207.4 22784361 22786802 + gene protein_coding_gene FALSE TRUE AT3G61540.1 peptidase family protein similar to Os06g0163600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056898.1); similar to Alpha/beta hydrolase fold [Shewanella amazonensis SB2B] (GB:ZP_00587466.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Peptidase S33, prolyl aminopeptidase; (InterPro:IPR002410) 0.239868979801061 3.29539409422216 0.0102195327280239 1 4.30864770432303 15.4982323786717 0.239868979801061 0.0388824386328495
AT1G77840_at 8.53090554443532 8.65384130862867 8.97359361269566 8.9376028771106 8.6193047402164 8.53232099222203 8.47661475837082 8.74277645753976 8.29352062740124 8.05805151281832 8.57499492864922 8.4718137509924 8.22490909015387 8.414284041723 8.77558927970792 8.35699311833638 8.1082898822162 8.43127740482213 7.87914122911038 0.106992002481497 0.107931523351795 0.111697658983258 0.108677874876872 0.109549703739966 0.108446554906253 0.108945624873694 0.106992002481497 0.126934529072140 0.123192692334781 0.106992002481497 0.109034232520895 0.114808349368075 0.111727089856951 0.111057323794479 0.106992002481497 0.115313167878995 0.116587613915247 0.116424978664355 1 1 + 29274726 29275250 29275000.182 29273381 29275480 + gene protein_coding_gene FALSE TRUE AT1G77840.1 eukaryotic translation initiation factor 5, putative / eIF-5, putative Identical to Probable eukaryotic translation initiation factor 5-2 (eIF-5 2) [Arabidopsis Thaliana] (GB:Q9S825); similar to eukaryotic translation initiation factor 5, putative / eIF-5, putative [Arabidopsis thaliana] (TAIR:AT1G36730.1); similar to putative eukaryotic translation initiation factor 5 [Oryza sativa (japonica cultivar-group)] (GB:BAD54665.1); similar to Os09g0326900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062885.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Translation initiation factor IF5; (InterPro:IPR002735) 0.253767759474680 3.29524993438309 0.0102217934053277 1 4.30844638643172 16.9317067331616 0.253767759474680 0.053287562880714
AT4G14560_at 8.27422021781828 8.46813462640416 9.03548775891229 8.98717191892599 9.81028041389276 9.4350202754378 9.54049524962556 9.5855535686162 8.34074442150001 8.60187111536498 9.03318453410481 8.98865553029136 8.94754843375461 8.20859565683482 9.59781917296674 9.19024016191446 9.28722300615852 8.86026126343724 9.47401019857172 0.150905512235051 0.150025403671206 0.151017401959347 0.146250629448972 0.142581730849589 0.146147296400112 0.143610011248554 0.144967399503885 0.164315763871711 0.15322496634054 0.143700827911056 0.144758689431333 0.147561919089795 0.177952522001150 0.146074868081861 0.147897267331799 0.148830322572987 0.147778978397857 0.147353757134398 4 4|0 +|/ 8361212 8361707 8361405.7 8361054 8361982 + gene protein_coding_gene FALSE TRUE AT4G14560.1 IAA1 (INDOLE-3-ACETIC ACID INDUCIBLE); transcription factor auxin (indole-3-acetic acid) induced gene (IAA1) encoding a short-lived nuclear-localized transcriptional regulator protein. Identical to Auxin-responsive protein IAA1 (Indoleacetic acid-induced protein 1) (IAA1) [Arabidopsis Thaliana] (GB:P49677;GB:O23312); similar to IAA2 (indoleacetic acid-induced protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23030.1); similar to auxin-responsive protein (GB:AAA16569.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.279269117148367 3.29460067622765 0.0102319814024698 1 4.30753967323349 18.0519119445767 0.279269117148367 0.0739872223194511
AT1G28200_at 8.4660372726883 8.57751839609884 8.8077421710776 8.99183156994442 9.39279495208818 8.74194936186604 8.87709967753982 8.75643706479568 8.1418308721401 8.06981600880508 8.6261458116875 8.53056950364502 8.67691775772812 8.51604742406879 8.45725922607895 8.50498221499927 8.14571725781533 8.38300049218165 8.0536286462801 0.161823645354461 0.159657679707759 0.164618462804668 0.163119795524159 0.172866082189640 0.170974738358287 0.161444603239871 0.162183843877941 0.174185138221865 0.161769641190847 0.166544508023216 0.160510751366411 0.163327360096375 0.160233520470556 0.16974190218773 0.159251371832652 0.182914533214514 0.163622568577400 0.161635564185398 1 1 - 9850384 9852083 9851256.909 9850134 9852353 - gene protein_coding_gene FALSE TRUE AT1G28200.1 FIP1 (FH INTERACTING PROTEIN 1) VirF-interacting protein FIP1 similar to GRAM domain-containing protein / ABA-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G22475.1); similar to putative ABA-responsive protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36095.1); similar to Os03g0187600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049211.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain GRAM; (InterPro:IPR004182) 0.352980598123611 3.29328504366285 0.0102526586307496 1 4.30570219217176 17.1106788766460 0.352980598123611 0.120453554271791
AT1G17490_at 7.22326281294546 7.29323672151797 7.21172558269018 7.28360681762172 7.57615295851968 7.26120191432501 6.86094850245343 6.56464877150465 6.62981150640026 6.96841746869 7.10375189646054 7.2125560971438 6.77970388083767 7.11091563909588 7.18382918500699 7.17318978104667 6.7807101958317 6.78449716890097 6.79514116223701 0.144079569307274 0.140273394102275 0.152557743272942 0.154320293835946 0.144581312641642 0.142487274421642 0.147067664543361 0.145958841582761 0.142663196694631 0.137816725357624 0.15226210637623 0.149153875790718 0.142317096031335 0.149887964925919 0.151193481736294 0.146954028576427 0.142399117610046 0.139238026394088 0.141821941052504 1 1|0 +|/ 6008664 6009129 6009040.222 6008582 6009413 + gene protein_coding_gene FALSE TRUE AT1G17490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72690.1); similar to Os09g0363700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062994.1) 0.283000900474269 3.29234470702185 0.0102674643313395 1 4.30438874503109 14.0663151483554 0.283000900474269 0.0768196944027393
AT3G53990_at 10.8021894081567 10.4774072286289 10.2708540191953 9.9973034083804 11.0276666781713 10.3711876909841 9.53535352317773 9.32351349990115 9.9142989791308 9.89536414542832 10.5448753984659 10.2491321952332 10.2264278028282 10.4372165811488 10.3696479282779 9.58443698521427 9.8014654222605 10.4298706930421 9.62325485928027 0.0846803417572461 0.0836052560902531 0.0829581214908052 0.0834855288353662 0.0863896284998061 0.0796349713196702 0.0916337789808804 0.0842423809299913 0.0909479589852045 0.0805201097193912 0.0788803179844027 0.0792398054980127 0.0806500007830853 0.0808615771639573 0.0803119032467284 0.0784102554744323 0.0853564691449981 0.0798873443458589 0.0779774421599327 3 3|0 -|/ 20001640 20001964 20001828 20000315 20002097 - gene protein_coding_gene FALSE TRUE AT3G53990.1|AT3G53990.2 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to ENOD18 protein [Vicia faba] (GB:CAC18558.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016)|similar to universal stress protein (USP) family protein / early nodulin ENOD18 family protein [Arabidopsis thaliana] (TAIR:AT3G03270.2); similar to ENOD18 protein [Vicia faba] (GB:CAC18558.1); contains domain no description (G3D.3.40.50.1420); contains domain Adenine nucleotide alpha hydrolases-like (SSF52402) 0.388274249372873 3.28898803476342 0.0103204985213263 1 4.2996993579253 20.2338628256188 0.388274249372873 0.140180073498370
AT1G10690_at 6.05340590088507 6.74150723133623 6.55484425173605 6.58305241414392 7.22377381127475 7.21643748929909 4.88701786020243 5.293525042311 5.4924774794431 4.94857979432419 4.68984601346336 4.15203772276953 4.33611348550147 4.68080255610791 3.78865506625416 4.79941756562846 4.97088994908696 4.42440100274261 4.1421456103052 0.269573787506202 0.272764381138113 0.271134040475905 0.271243690256372 0.279523703850516 0.274078287937679 0.264911851239249 0.267907350964071 0.270023110834837 0.263146185297884 0.267369430000637 0.271377895725942 0.263146185297884 0.263146185297884 0.276548547474381 0.264251341185829 0.269172197476112 0.275984785723908 0.266054606376551 1 1 - 3550276 3550525 3550386 3549993 3550633 - gene protein_coding_gene FALSE TRUE AT1G10690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40460.1); similar to hypothetical protein MtrDRAFT_AC146560g4v1 [Medicago truncatula] (GB:ABE87926.1) 0.384932887549958 3.28869235263895 0.0103251839287427 1 4.29928621690245 10.9898645242578 0.384932887549958 0.138398410577943
AT2G17820_at 7.8474117595127 7.87015075322015 7.35846103176938 7.38166656487174 8.10879995794722 7.88728067166636 7.64132366454292 7.55095631825873 7.79065741138886 7.8586869061549 7.31113009134787 7.54225625340388 6.82599835445136 7.1992825065013 7.53864663262782 7.88055108489095 7.32127231872149 7.35361666878677 7.78578275160986 0.159450218197894 0.153925230980676 0.164558455289853 0.165259821724964 0.15709240798211 0.162851833364634 0.156435457708682 0.158589063751393 0.16128949855303 0.159324242610909 0.159989246953166 0.156684916792473 0.17076540703188 0.157989524840331 0.160668014473245 0.158740465677887 0.173428303253147 0.161188698055796 0.168473998305593 2 2|0 -|/ 7750216 7750746 7750472.1 7750006 7755302 - gene protein_coding_gene FALSE TRUE AT2G17820.1 ATHK1 (HISTIDINE KINASE 1) Encodes a member of the histidine kinase family. similar to CKI1 (CYTOKININ-INDEPENDENT 1), protein histidine kinase/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT2G47430.1); similar to osmosensor histidine-aspartate kinase [Populus x canadensis] (GB:CAI78447.1); similar to cold inducible histidine kinase 1 [Catharanthus roseus] (GB:AAQ10680.2); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.241761675764864 -3.28702327783404 0.0103516740886204 1 4.29695391619138 15.2974079711700 -0.241761675764864 0.0417820802338201
AT4G01897_at 8.4185730482552 8.55300722450954 8.42971247920424 8.8026815839702 9.15841999204636 8.6606951902778 9.05421364187215 9.0333177060182 8.3216323535298 8.51661927989053 9.1604425729765 8.8712202499369 8.9062694507911 9.19936771838888 8.87012419935913 9.22687369162729 8.69801962524457 9.00744125459573 8.12665230332358 0.159918093470714 0.146365277036569 0.158509044253471 0.148501255035849 0.145762313841774 0.153493685972809 0.141678759335242 0.145506361640007 0.146203847296233 0.147000714025769 0.141678759335242 0.142792072818542 0.141678759335242 0.14200509736381 0.144118288802481 0.146072690051367 0.161614416458609 0.143432771704819 0.156956185914611 4 4|0 -|/ 820491 821380 820821.3 820336 821505 - gene protein_coding_gene FALSE TRUE AT4G01897.1 similar to Protein of unknown function DUF952 [Medicago truncatula] (GB:ABE87749.1); contains InterPro domain Protein of unknown function DUF952; (InterPro:IPR009297) 0.334467302997291 3.28614575281465 0.0103656299884385 1 4.29572756683875 17.4208798537424 0.334467302997291 0.110178227675042
AT4G27430_at 7.81027055119921 8.34229255088065 6.62681419296345 7.20096810064603 8.0557917020597 7.87614668150896 9.32240360276997 9.34238148065486 9.03840729892914 9.14765360163518 9.95815540234921 9.95563875297114 9.709241964585 9.61935567854593 9.6491390468754 9.72944400910973 8.94458061529981 9.7331413705636 9.32020265549852 0.196306895016473 0.172305478982466 0.205750438465416 0.200366161614384 0.172039885816593 0.191491301095914 0.172029032473534 0.172889983673188 0.188658685155672 0.176001272814650 0.168894494184161 0.169000956507033 0.173027179353690 0.168637413321676 0.168946467813985 0.169762283934037 0.183581077339770 0.173502045138648 0.174637629777066 4 4 + 13722209 13722704 13722477.636 13718685 13722984 + gene protein_coding_gene FALSE TRUE AT4G27430.1 CIP7 (COP1-INTERACTING PROTEIN 7) Positive regulator of light-regulated genes. Novel nuclear protein which requires light for its high level expression. similar to disease resistance protein (TIR class), putative [Arabidopsis thaliana] (TAIR:AT1G61100.1); similar to Os03g0861100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051978.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44760.1) -0.385412145365891 -3.28290695507284 0.0104173097804644 1 4.29120054434161 17.4876794196979 -0.385412145365891 0.139023501263382
AT1G17550_at 8.0857939178377 8.19627271392586 8.91875083063491 8.59754331422415 9.0744202841347 8.63023487642358 8.99460529361974 8.84930595762811 8.15693526136384 7.9030215064112 8.63047249616975 8.17247137779466 8.3691418267154 8.18369886474657 7.62553941446214 8.2805394690318 8.61577268691632 8.477322495268 7.74086991631053 0.167167950333437 0.163604024293878 0.163952495247131 0.165055442433551 0.180522863790927 0.168381443198419 0.189027793477557 0.169089424549282 0.185706559884635 0.171923779243474 0.171052545524567 0.169313039627553 0.169562536531227 0.179707634924555 0.182587672228403 0.1702324161703 0.174831773256544 0.174475193279484 0.191051042875472 1 1 + 6036095 6036836 6036588 6034355 6037282 + gene protein_coding_gene FALSE TRUE AT1G17550.1 HAB2 (Homology to ABI2); protein phosphatase type 2C Protein Phosphatase 2C similar to HAB1 (HOMOLOGY TO ABI1), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G72770.1); similar to Os05g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056498.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:AAT39223.1); similar to Os01g0583100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043415.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.317251894897186 3.28289366395860 0.0104175224151383 1 4.29118196421419 16.7823552603452 0.317251894897186 0.0999819342293392
AT2G24830_at 5.33219754559871 5.76212420073571 5.36951666498125 5.69251621866027 5.63876153420074 5.57585302578097 5.03959185734311 5.42368034701197 6.02568372552334 5.94147718974484 5.34219435648204 5.36490178192867 5.24893587960298 5.22961164080339 5.06381037859626 5.45943557013246 5.50735273173551 5.14009081745741 6.50851514092238 0.196716709213731 0.189212156014757 0.190413841141486 0.182598874846631 0.184574739397941 0.193303295509996 0.184196400995191 0.188969190482130 0.203334384903566 0.182914077994716 0.182598874846631 0.182606960619855 0.188902146346183 0.188636202969543 0.187341502120144 0.182745229100268 0.189964832846303 0.186112557722740 0.184797179036132 2 2 - 10584107 10584621 10584378.909 10583935 10586309 - gene protein_coding_gene FALSE TRUE AT2G24830.1 zinc finger (CCCH-type) family protein / D111/G-patch domain-containing protein similar to Os02g0793000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048365.1); similar to zinc finger protein [Aedes aegypti] (GB:EAT44138.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.342126833785540 -3.28257773319190 0.0104225780960253 1 4.29074030720171 11.2058303392837 -0.342126833785540 0.114875856013554
AT1G49040_at 7.15636210598479 7.30599291252483 6.23695234678618 6.63197844033517 6.4144376791846 6.31607082018966 6.27153964975765 6.77426291886502 6.66896292297331 6.74576985122144 6.149104493073 6.65599016600003 6.4853486800578 6.78060276444466 6.53671476555288 6.5537003903973 6.08871028262689 6.39177372764422 6.57128181287064 0.198608820755584 0.200751802743120 0.211817787405301 0.202208877029742 0.199107942908307 0.215152196130617 0.195861185527513 0.198637069230421 0.222046163625440 0.201947338577893 0.197855656244785 0.205604919385007 0.195861185527513 0.200233189248834 0.195861185527513 0.199056044568665 0.227452616845423 0.205579207731773 0.197183966457039 1 1|0 -|/ 18143091 18144413 18143640.556 18142902 18152649 - gene protein_coding_gene FALSE TRUE AT1G49040.1|AT1G49040.2 SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1) Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G23430.2); similar to Os01g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043390.1); similar to WD-40 repeat protein [Chlorobium phaeobacteroides DSM 266] (GB:YP_911315.1); contains InterPro domain DENN; (InterPro:IPR001194); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain dDENN; (InterPro:IPR005112); contains InterPro domain uDENN; (InterPro:IPR005113)|similar to DENN (AEX-3) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35560.1); similar to Os01g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043390.1); similar to PREDICTED: similar to CG6939-PB, isoform B isoform 1 [Tribolium castaneum] (GB:XP_966320.1); contains InterPro domain DENN; (InterPro:IPR001194); contains InterPro domain dDENN; (InterPro:IPR005112); contains InterPro domain uDENN; (InterPro:IPR005113) -0.341970639394851 -3.28065997465054 0.0104533222337998 1 4.28805911954424 13.1970736197433 -0.341970639394851 0.114901222826084
AT1G53120_at 6.60247778949333 6.81648046976342 6.57434831496365 6.26281093731968 6.36184345411086 6.78654096768473 7.5647836654241 7.30918627316455 6.70837417897512 6.69038107014674 6.82679645528662 6.74683174591655 6.6726439211595 6.55384024830626 6.6641948717327 6.74386000309707 6.59269211234639 6.30182316459507 6.76385166223746 0.233033574536757 0.224171520482382 0.223127102779107 0.228594678139713 0.227206419139669 0.22915790886351 0.227108054647101 0.223733158034908 0.235412576489336 0.22227239869288 0.22459247686303 0.22227239869288 0.2234164488192 0.22227239869288 0.240407405898552 0.225892497033357 0.242066791190115 0.242590914059237 0.22227239869288 1 0|1 /|+ 19797216 19798091 19797634.333 19796425 19798430 + gene protein_coding_gene FALSE TRUE AT1G53120.1 RNA-binding S4 domain-containing protein similar to S4 domain protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD86964.1); similar to Os01g0747700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044235.1); contains InterPro domain RNA-binding S4; (InterPro:IPR002942) -0.329939893044856 -3.27980274866347 0.0104670953829574 1 4.28686050830666 13.4641611268696 -0.329939893044856 0.107871607380438
AT4G14965_at 7.19997827456288 7.23614912224346 7.4148103389737 7.50746314155635 7.61600007909057 7.55291640548452 7.01569042794268 7.19793881211419 5.10559402333165 6.36769442051453 6.02037701488483 5.96489689338927 6.36200012269059 5.97416914739141 6.28716528805006 6.11796418586022 6.44699112370889 5.84683996569103 6.56470676205781 0.219861647015290 0.217215308431558 0.220759951753785 0.217129301813215 0.214589313894348 0.214178347036312 0.216964605382760 0.215037852260031 0.243619305136257 0.213619042293196 0.211733597348044 0.211230249368226 0.216984209312292 0.218510386029414 0.217074743791053 0.211961985491425 0.225076122416057 0.221681302901155 0.221674545378878 4 0|4 /|+ 8551928 8553336 8552809.889 8551240 8553549 + gene protein_coding_gene FALSE TRUE AT4G14965.1 ATMAPR4 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 4); heme binding / transition metal ion binding similar to ATMAPR2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 2), heme binding / transition metal ion binding [Arabidopsis thaliana] (TAIR:AT2G24940.1); similar to Os03g0205500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049314.1); similar to fiber protein Fb38 [Gossypium barbadense] (GB:AAR07602.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.237621865567053 3.27954503461188 0.0104712398205106 1 4.28650014457619 13.4127260934175 0.237621865567053 0.0375520228648426
AT3G58470_at 6.30859407132808 6.42035688764876 6.14721117485019 6.43209664826147 6.8533210666736 7.24689324907798 6.27479015276888 6.51603875792737 5.3057524852709 5.06442414504298 5.38542911217061 5.55178861498293 5.77064265861338 5.78638933721717 6.0486320566717 5.50863791161497 5.81548986630908 5.96557183426353 5.82748928941253 0.205067468503688 0.195275570902427 0.199431833225902 0.193773763345272 0.200633475132124 0.207626338853396 0.191645973341759 0.202314817981711 0.214403855937873 0.208849339780775 0.201499914456256 0.192001680426130 0.19628557668362 0.191253075449945 0.205925352032497 0.192232763579500 0.194640440495639 0.19687099349246 0.190635236819002 3 3|0 -|/ 21638115 21639237 21638803.5 21637648 21639546 - gene protein_coding_gene FALSE TRUE AT3G58470.1 similar to unknown protein [Oryza sativa] (GB:AAL58958.1); similar to Os03g0749900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051279.1) 0.309893134017911 3.27508576492639 0.0105432245887863 1 4.28026350019826 12.0890600746783 0.309893134017911 0.0958464489451388
AT4G24460_at 6.45815286311941 6.10921028904322 5.98828859969767 5.65983850153852 4.96111592319463 4.69319816950502 6.39635391200411 5.84227996286218 5.60721353252018 5.60613268395237 5.46481569368752 5.91603576649312 5.58219797605562 5.19516549619605 6.07527803557132 6.13473301199569 6.12864954128443 5.02251819856277 5.49116995913794 0.22424339887348 0.225683042983841 0.227922161493821 0.228895312749886 0.231684440178991 0.231574984159796 0.22424339887348 0.22424339887348 0.241513774259322 0.229191921322715 0.230496675867569 0.22424339887348 0.227515192042249 0.237111872317662 0.230436925224979 0.236131167262857 0.232096852116612 0.229802095621608 0.22424339887348 4 4|0 +|/ 12643784 12645027 12644565.75 12642897 12645457 + gene protein_coding_gene FALSE TRUE AT4G24460.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19380.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77682.1); similar to Os12g0511300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066868.1) -0.377068400914643 -3.27506346372519 0.0105435858908662 1 4.28023230444952 11.3926029143794 -0.377068400914643 0.134984662368509
AT1G04870_at 7.93299817928501 8.37784968010576 7.54476565869439 7.61854647267964 7.30239508207606 7.26607582113051 7.21525398811141 7.58781893838282 7.08090840276894 6.47270157709548 6.61266694874642 6.6160016550904 6.32745216976247 6.64598477616822 6.84261937591007 6.07124973195396 6.46932361265466 6.037634096129 6.68112538452137 0.200909377429715 0.204209626680515 0.204619408442057 0.200909377429715 0.210179743758961 0.204661857251861 0.205950780088847 0.200909377429715 0.204147913698278 0.211796635735323 0.200909377429715 0.204401440337477 0.200909377429715 0.201212966777274 0.200909377429715 0.207856614671992 0.205069531882064 0.203362858598788 0.202322047806792 1 1 - 1373513 1374345 1373887 1373233 1375761 - gene protein_coding_gene FALSE TRUE AT1G04870.1|AT1G04870.2 protein arginine N-methyltransferase family protein similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G20020.1); similar to Os06g0142800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056772.1); similar to Ar (GB:CAL54346.1); contains domain no description (G3D.2.70.160.11); contains domain PROTEIN ARGININE N-METHYLTRANSFERASE 2 (PTHR11006:SF13); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain PROTEIN ARGININE N-METHYLTRANSFERASE (PTHR11006)|similar to protein arginine N-methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G20020.1); similar to Os06g0142800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056772.1); similar to Ar (GB:CAL54346.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.3187898400764 -3.27472196334822 0.0105491201635181 1 4.27975459391212 14.2046021445234 -0.3187898400764 0.101419511749460
AT2G46900_at 7.85205239596661 8.2709718143196 7.39096315261456 7.69177837174343 7.97960096169467 7.85063984033458 7.22308578416186 7.05635469513448 7.76083584795014 8.02065197469386 7.73693498883515 7.36082243072417 7.22437897703974 7.21511494159167 7.13058826411577 7.2921824773376 7.10419607956845 7.37683675860382 8.38024824173922 0.190961513526634 0.194759362872456 0.185733495897545 0.192440822279277 0.199595209818679 0.196595671036418 0.185545651671650 0.185785688233199 0.199715433835869 0.188884421192447 0.207471600023136 0.185505189203256 0.185505189203256 0.194050690736226 0.197923510002345 0.189564324590369 0.196279688856357 0.200025195021342 0.185540460080513 2 2|0 +|/ 19278394 19279012 19278747.6 19276627 19279236 + gene protein_coding_gene FALSE TRUE AT2G46900.1 similar to PREDICTED: similar to CG7927-PA [Tribolium castaneum] (GB:XP_973489.1); similar to Os09g0514900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063663.1); contains InterPro domain Protein of unknown function DUF654; (InterPro:IPR006994); contains InterPro domain DNA polymerase beta, N-terminal-like; (InterPro:IPR010996) -0.310575373766428 -3.27276178829399 0.0105809451978419 1 4.27701232887199 15.3439528200903 -0.310575373766428 0.0964169989691015
AT3G48420_at 9.9798133419355 9.90086319192716 9.67176022601107 9.54782057241784 10.1539858585437 9.65919689725802 10.9977992032249 10.9483156621391 10.9624530206723 11.2594568911040 11.2559755743201 11.2851522650160 10.8995935829820 11.1649750689425 11.4577833977827 11.3937095567462 10.8204890145236 11.2000236050294 11.0376767366431 0.0856491415702632 0.0794725954248653 0.0857508219440871 0.0857530213385878 0.0823059784815906 0.0835865621582252 0.0859075912495729 0.0796116638753767 0.0853960570486589 0.0811812035610426 0.0793046332011451 0.0793046332011451 0.0813310990074806 0.0849621918392067 0.0812384000310882 0.0793046332011451 0.0793331858109052 0.0811334751073442 0.0819795530241886 3 3|0 +|/ 17941363 17942505 17942107.75 17940632 17942686 + gene protein_coding_gene FALSE TRUE AT3G48420.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G39970.1); similar to Os03g0565200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050499.1); similar to Putative hydrolase [Oryza sativa (japonica cultivar-group)] (GB:AAK53865.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) -0.30016154294381 -3.27254103843471 0.0105845355461574 1 4.27670347449899 21.2430651896693 -0.30016154294381 0.0897316218580343
AT3G55600_at 5.18179438703636 5.20770875254379 5.36236099718727 5.40167639838848 5.58971298860972 5.31413474807038 4.81052417445662 4.88354446628436 4.57575123312262 4.28389484315682 4.66785840078694 4.71432833986195 4.41528831115472 4.95315064356238 4.40630249805333 4.68063634487256 4.55606491221863 4.59217637610721 4.70727638645391 0.194792760774073 0.195626321183455 0.195565823236036 0.201058006992339 0.196400629946188 0.192507502258521 0.197171390689103 0.195518002475193 0.196518029232914 0.198668604588586 0.194866312478602 0.194316364717478 0.195001346873821 0.190061350311145 0.193834051470788 0.194729660782819 0.206116260503245 0.196462183500971 0.195199136362343 3 3|0 +|/ 20632145 20633295 20632824.6 20631448 20633449 + gene protein_coding_gene FALSE TRUE AT3G55600.1 similar to cation exchanger, putative (CAX10) [Arabidopsis thaliana] (TAIR:AT1G54110.1); similar to Os09g0272500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062740.1); similar to Os08g0533700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062347.1); similar to cation exchanger-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13159.1); contains domain no description (G3D.1.20.5.110) 0.248498289366557 3.27168072061085 0.0105985402194868 1 4.27549973800723 9.79169872202462 0.248498289366557 0.0500042895313448
AT1G04140_at 8.41020059852823 8.5852706892207 8.02077036373877 8.418650812958 8.60027195251692 8.51207459934646 8.1194876852173 8.28518920204175 7.84617197571277 8.0210935628239 8.63774331418791 8.56934414264455 8.66385298900993 8.61455063930823 8.37903750489345 8.67361959418575 8.65074006035375 7.96163262739584 8.07196589902775 0.139379439533647 0.142688651922997 0.147356972009855 0.143467261852633 0.142208286194723 0.150071154727731 0.146340943710184 0.154361534625596 0.159604069061244 0.143767743581690 0.142491583109589 0.139709714472557 0.139158674980933 0.144665471984922 0.141096720803254 0.139158674980933 0.15216534239519 0.144513991320062 0.145827880336341 1 1|0 -|/ 1076154 1077203 1076707.556 1075543 1080629 - gene protein_coding_gene FALSE TRUE AT1G04140.1|AT1G04140.2 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G43930.3); similar to transducin family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33212.1); similar to Os02g0290300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046589.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71197.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045)|similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G43930.3); similar to transducin family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33212.1); similar to Os02g0290300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046589.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71197.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.288488092431998 3.27156972327758 0.0106003485012262 1 4.27534442698376 16.6182689487055 0.288488092431998 0.0819399038956894
AT2G44100_at 10.6643528484025 10.7572351924828 10.9483614657720 11.0191138286255 11.0110716028858 10.6496746303633 10.5672275159654 10.4893645726005 10.0805364909008 10.2046901554179 10.4580759982051 10.2900093737430 10.4789984703807 10.3214869549867 10.1468593700456 10.3348247530425 10.3488484404637 10.3085564948242 9.97626847519543 0.0930157090239679 0.0944436205256014 0.0996500394624505 0.0948612441552038 0.0928157039755644 0.103264522623183 0.094384481303777 0.0959682711247494 0.101779236918024 0.0972836361441347 0.0941334729319827 0.0931385078587849 0.0929085972778167 0.0983220657876283 0.0954052544942774 0.0937153239130426 0.103150229803343 0.0997952263977063 0.0981572907845342 2 2 + 18250848 18251900 18251394.636 18248768 18253574 + gene protein_coding_gene FALSE TRUE AT2G44100.1|AT2G44100.2 ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1) GDP dissociation inhibitor involved in vesicular membrane traffic similar to RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT5G09550.1); similar to ATGDI2 (RAB GDP DISSOCIATION INHIBITOR 2), RAB GDP-dissociation inhibitor [Arabidopsis thaliana] (TAIR:AT3G59920.1); similar to GDP dissociation inhibitor [Medicago truncatula] (GB:CAF02075.1); similar to Rab GDI protein [Medicago truncatula] (GB:ABE89690.1); similar to GDP dissociation inhibitor [Cicer arietinum] (GB:CAA06731.1); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005); contains InterPro domain Rab GDI protein; (InterPro:IPR000806) 0.268151395502767 3.27064306313127 0.0106154575387107 1 4.2740477595107 20.9748614683703 0.268151395502767 0.0670915403586293
AT2G20330_at 6.76944822115474 6.84525613237534 6.38307383105913 6.49968971337809 7.16385477473022 7.05893037640228 7.22725379623797 6.79716950053765 6.64378191125093 6.8956295626067 6.41177236499481 6.03050656720117 6.32371420629194 6.08515752440923 6.3744476004678 6.48093478332328 6.28662486747699 6.49744811442566 6.70972070351876 0.184320819756464 0.177557570568381 0.193463513430396 0.185693463576323 0.181323280381665 0.192037800785744 0.177175784750110 0.188307849850589 0.192079199958205 0.184904010059032 0.183590174212507 0.184142894173875 0.182792663533885 0.181100211014335 0.177921928812481 0.180802773703152 0.190596565350225 0.180913424265028 0.184274679719867 2 2 - 8780034 8780682 8780437.091 8779768 8782695 - gene protein_coding_gene FALSE TRUE AT2G20330.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to WD40-like [Medicago truncatula] (GB:ABE88641.1); similar to Os10g0464100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064792.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.285889855451132 -3.26879322511471 0.0106456863254491 1 4.27145900423205 13.3736027829174 -0.285889855451132 0.0803032816228567
AT1G64510_at 10.4381343866160 10.5349622424483 9.4775309699188 9.65755356773174 10.3414858121563 9.59020264343978 10.6118283721469 10.6885100098064 11.1202044309401 11.0656251601609 11.1698537640813 11.4832590693927 10.8842969709676 11.0525755950306 11.6217693056206 11.0571638068984 10.3134973659347 11.1146605297698 10.9313652548897 0.124852265955990 0.112680089818515 0.126716840813138 0.117913333038683 0.112165432604084 0.123911087005001 0.116013156331281 0.115513611740328 0.126138810141285 0.114274803704578 0.114146744759292 0.114650964486420 0.114675964464084 0.118734319484772 0.115303317231084 0.117432697600223 0.132229832480058 0.112963752697362 0.112165432604084 1 1 - 23958683 23959794 23959341.455 23958466 23959914 - gene protein_coding_gene FALSE TRUE AT1G64510.1 ribosomal protein S6 family protein Identical to 30S ribosomal protein S6 alpha, chloroplast precursor (RPS6) [Arabidopsis Thaliana] (GB:Q8VY91;GB:Q9SGW4); similar to 30S ribosomal protein S6 alpha, chloroplast precursor [Contains: 30S ribosomal protein S6 beta; 30S ribosomal protein S6 gamma; 30S ribosomal protein S6 delta; 30S ribosomal protein S6 epsilon] (GB:P82403); contains InterPro domain Ribosomal protein S6; (InterPro:IPR000529) -0.37679795107219 -3.26626859290162 0.0106870876809250 1 4.26792527944652 21.2306257503458 -0.37679795107219 0.135391386639054
AT1G75210_at 8.25306109110988 8.43461754412727 8.51019083938773 8.45295130767232 8.4555569908308 8.32804725265786 9.3714973514968 9.21967041034893 8.68760134192872 9.07326362523147 8.92929467129481 8.88956837784003 8.92949579860247 8.79641793939795 8.89392326593532 8.83262494233832 8.9519568060015 8.60003728534735 9.12251002554557 0.122144176123892 0.129414882053249 0.126157312429736 0.125699004458696 0.128060850982995 0.139186363649030 0.124764658466832 0.123928842539273 0.151855556136165 0.126696981394833 0.120331776722769 0.119795557826123 0.122673616425366 0.145236522966651 0.121100100583849 0.119795557826123 0.129313337915981 0.127204125379304 0.124286451666510 1 1|0 +|/ 28230574 28232380 28232007.375 28227530 28232636 + gene protein_coding_gene FALSE TRUE AT1G75210.1 5' nucleotidase family protein similar to 5' nucleotidase family protein [Arabidopsis thaliana] (TAIR:AT5G48960.1); similar to Os03g0774300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051421.1); similar to Similar to IMP-GMP specific 5'-nucleotidase (ISS) [Ostreococcus tauri] (GB:CAL55914.1); contains InterPro domain HAD superfamily (subfamily IG) hydrolase, 5' (InterPro:IPR008380) -0.245617556678703 -3.26598016070328 0.0106918283907199 1 4.26752151509969 17.5352190401606 -0.245617556678703 0.0475661963254018
AT2G22480_at 8.99476669520468 8.87885702907029 9.57930049490945 9.37417600937459 9.05796343000658 8.81242141832105 8.8020143684341 8.35290077274762 8.1264088677301 8.21149542110997 8.38542389310853 8.22561873367371 7.95006641174844 7.94573016080685 7.85648381021734 8.42625714826563 8.50334958402559 8.51463543869407 7.81728692234717 0.201078214470948 0.200423183766802 0.198979099222580 0.200025805901023 0.196855183753516 0.196855183753516 0.202025888918449 0.205325824709745 0.206694631643123 0.212878892238509 0.196855183753516 0.199784927227411 0.204881020420850 0.215023344711886 0.209166341147088 0.207624759237516 0.208602669220053 0.205131674612098 0.211325069479983 2 2|0 +|/ 9554567 9555467 9554994.25 9552627 9555646 + gene protein_coding_gene FALSE TRUE AT2G22480.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to putative diphosphate-fructose-6-phosphate 1-phosphotransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD09875.1); similar to putative phosphofructokinase [Oryza sativa (japonica cultivar-group)] (GB:BAD28914.1); similar to Putative pyrophosphate--fructose-6-phosphate 1-phosphotransferase [Oryza sativa] (GB:AAK98672.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.311522932813593 3.26446646025877 0.0107167438992302 1 4.26540239337143 17.1203880529068 0.311522932813593 0.097512119651745
AT2G38790_at 6.2650161020391 6.93877524963621 6.01780224396441 6.12688905286926 6.7146581766925 6.60020011299133 5.69984139810201 5.80073515390314 5.31693122011738 5.1507490546723 4.15030295735384 4.24246787644192 4.84240447671093 4.81595457161233 4.24895738140876 3.94942422615866 4.32781883963591 4.09739074948879 5.20696871613143 0.233746761860869 0.234178498039874 0.237669532162507 0.226475684832623 0.246206044710806 0.234722887913490 0.228654161367886 0.233673987645999 0.229916307640445 0.225635375098355 0.225635375098355 0.230135182226508 0.225635375098355 0.228133576893449 0.227093545379043 0.225769178746813 0.239368411848431 0.229084744159499 0.232132832061801 2 2 - 16221633 16222185 16221855.273 16221267 16222342 - gene protein_coding_gene FALSE TRUE AT2G38790.1 unknown protein -0.350873720706525 -3.26420921155844 0.0107209842530599 1 4.26504222935575 11.0501012521873 -0.350873720706525 0.121030863727628
AT4G33660_at 8.83299976855776 8.90692402020168 8.9114071705538 8.85946361073446 9.03330069865216 8.80111862435481 9.62995840193753 9.83778850062952 9.4244627002895 9.70676455391516 9.3842367614302 9.47401938444862 9.6989184877112 9.45801163268798 9.15006079133887 9.6268105289496 9.59320244915776 9.53130421499709 9.65884644554658 0.0907221565281702 0.0878852841148631 0.0919493977579152 0.0908935691501079 0.0907801475049939 0.0963760708632495 0.092609109168516 0.0879301325039214 0.103178983996784 0.0900253230048766 0.0876897247045423 0.0855977337391988 0.0906620127926438 0.0912818474856814 0.0905391457332787 0.0876396598699702 0.0954935600749251 0.0923794004372132 0.092138993291595 4 4|0 -|/ 16167475 16167799 16167626.5 16167292 16167954 - gene protein_coding_gene FALSE TRUE AT4G33660.1 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT2G41420.1); similar to adhesive/proline-rich protein homolog [Pinus taeda] (GB:AAF75822.1) -0.253857924334029 -3.25577213298050 0.0108610347330081 1 4.25322565384028 18.644750981748 -0.253857924334029 0.0561467833157356
AT1G60490_at 8.81195715753075 8.60658355786212 8.88082528148209 8.73043966254503 9.17371454275064 8.47410806179807 7.95230228742965 7.52611118736378 7.63155419858152 7.45237982393867 7.42081447338649 7.79974405397567 7.62119589129956 7.79164023641671 7.68300615617833 8.0053454694595 7.93361899661596 8.03247504097099 7.64734418893647 0.185327987060672 0.181966826271952 0.181261039625047 0.180170850222041 0.187622443712287 0.190014233790111 0.187593698001373 0.182275894474910 0.203566468040629 0.188837460747294 0.184399279337916 0.186061505583693 0.180950957559672 0.187916266000919 0.187513635263131 0.180170850222041 0.194804488818329 0.195608101424828 0.188330606748922 1 0|1 /|- 22289501 22290264 22289896.3 22289237 22293980 - gene protein_coding_gene FALSE TRUE AT1G60490.1 ATVPS34 (Arabidopsis thaliana vacuolar protein sorting 34); phosphatidylinositol 3-kinase phosphatidylinositol 3-kinase (AtVps34) Identical to Phosphatidylinositol 3-kinase VPS34 (EC 2.7.1.137) (PtdIns-3-kinase VSP34) (PI3-kinase VPS34) (PI3K VPS34) (AtVPS34) [Arabidopsis Thaliana] (GB:P42339;GB:O22695); similar to ATPI4K ALPHA (Arabidopsis thaliana phosphatidylinositol 4-kinase alpha), inositol or phosphatidylinositol kinase [Arabidopsis thaliana] (TAIR:AT1G49340.1); similar to phosphatidylinositol 3-kinase [Brassica napus] (GB:AAN62481.1); similar to Phosphatidylinositol 3-kinase, root isoform (PI3-kinase) (PtdIns-3-kinase) (PI3K) (SPI3K-5) (GB:P42347); similar to phosphatidylinositol 3-kinase (GB:AAA83427.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Phosphatidylinositol 3-kinase, Vps34 type; (InterPro:IPR008290); contains InterPro domain Phosphoinositide 3-kinase accessory region PIK; (InterPro:IPR001263); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain Phosphoinositide 3-kinase, C2; (InterPro:IPR002420); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.399710321116531 3.25564816575941 0.0108631067342218 1 4.25305197138369 16.2010416058153 0.399710321116531 0.14845248315246
AT3G60540_at 6.71994709851183 7.4888154060351 7.45562270978897 7.76194743390258 6.42896700574383 5.6907423613313 4.09804711445074 4.43464408352812 5.65427512038059 4.79994504124407 4.86170579695146 5.36677742376948 4.29426155700716 5.19256523323513 4.80129169398405 5.08480790173591 4.9082908079982 4.87284660263193 4.75177740487301 0.374072804843928 0.380886266322662 0.369781638953721 0.357383761920385 0.359242712500432 0.360044907415179 0.347862049082342 0.346844591195054 0.344067733961321 0.347941911382792 0.351012102887108 0.344067733961321 0.344359364467576 0.349492270153094 0.344067733961321 0.344067733961321 0.367254807089043 0.350363287552884 0.349049174506345 3 3 - 22386119 22386328 22386209.273 22385938 22386840 - gene protein_coding_gene FALSE TRUE AT3G60540.1|AT3G60540.2 sec61beta family protein similar to SEC61 BETA (suppressors of secretion-defective 61 Beta) [Arabidopsis thaliana] (TAIR:AT2G45070.4); similar to Sec61beta [Medicago truncatula] (GB:ABE79095.1); contains InterPro domain Sec61beta; (InterPro:IPR005609) 0.501554486862577 3.25546237802625 0.0108662127847408 1 4.25279167297332 11.2555837679933 0.501554486862577 0.200569269553493
AT4G14440_at 8.750760311746 8.90037061227935 8.98191491960955 9.03580756760183 10.0277205175138 10.2244342740223 9.79404069490255 9.99276680283483 10.4730516115641 10.2535464086944 10.9906003045375 11.0470279767382 10.4547208847391 10.6808520187791 10.8448041363953 9.97361840553232 9.86892701626261 10.4832568554148 10.0068984070277 0.0817099092735543 0.080102576085163 0.0800666956130207 0.08162505690452 0.0835918936964382 0.0848603530036677 0.0826156772343852 0.080182928224241 0.0831593420336281 0.0810776438930494 0.080484498007459 0.0798985907456666 0.0825844738813833 0.0798255273121817 0.0808089168146708 0.080147598061945 0.0875361903266618 0.083141427035508 0.0842745661332085 4 4 - 8306947 8307495 8307260.273 8306741 8307749 - gene protein_coding_gene FALSE TRUE AT4G14440.1 enoyl-CoA hydratase/isomerase family protein similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14430.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.253230927475314 3.254566530582 0.0108812028626151 1 4.25153648906903 19.8572143420114 0.253230927475314 0.055667687654273
AT4G01450_at 5.05506749304034 6.21204692059739 6.30871393040175 6.89708391607645 8.3388143858673 7.24917885271328 8.28596111041827 7.98459356998759 5.13594403354347 6.22756366049087 7.34242648140538 7.38907101467502 7.37817344846748 7.10484901151936 5.88199610513577 6.99235471324352 7.63534505264344 6.97537853139635 6.61499783686933 0.271941210283099 0.268178205827144 0.283183913055046 0.272423212222849 0.270416318132554 0.280239946449857 0.268505646667875 0.266311453667471 0.292625720308391 0.274067001401824 0.266311453667471 0.266311453667471 0.266311453667471 0.292408093580697 0.276653872756446 0.267758352441127 0.294165036393015 0.275560094643339 0.266311453667471 4 4 + 609761 610463 610020.636 608456 610724 + gene protein_coding_gene FALSE TRUE AT4G01450.1|AT4G01450.2|AT4G01450.3 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G01440.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os06g0109200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056574.1); similar to H0523F07.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67024.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT4G01440.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os06g0109200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056574.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.704322307798351 3.25448600861742 0.0108825512840772 1 4.25142366424953 13.5815747582771 0.704322307798351 0.297880748964303
AT4G02020_at 7.64491303446276 7.7611839868949 8.44072707077984 8.36082807431785 8.22429087931785 7.88458083814537 8.18814791321464 8.27338841905837 6.80607644787736 7.99672955751614 7.62604643375171 7.40975521796665 7.82699598920481 8.04406980268984 7.21270335981995 8.25997640443547 8.30415343551374 7.95160732726684 7.88012237104184 0.153134223747801 0.143559859999623 0.146868433855680 0.156154605988619 0.146757659836571 0.149868850878058 0.150067572510605 0.147109658131057 0.165390122512729 0.152075422489056 0.147630378523180 0.153948871108003 0.154229694838769 0.146726094348423 0.151663395469814 0.147452782848954 0.170566782694463 0.148916821866694 0.150749025383782 4 4|0 +|/ 890572 891718 891188.9 886600 891955 + gene protein_coding_gene FALSE TRUE AT4G02020.1 EZA1 (SWINGER); transcription factor encodes a polycomb group protein EZA1. Also known as SWINGER (SWN). Forms part of a large protein complex that can include VRN2 (VERNALIZATION 2), VIN3 (VERNALIZATION INSENSITIVE 3) and polycomb group proteins FERTILIZATION INDEPENDENT ENDOSPERM (FIE) and CURLY LEAF (CLF). The complex has a role in establishing FLC (FLOWERING LOCUS C) repression during vernalization. Performs a partially redundant role to MEA in controlling seed initiation by helping to suppress central cell nucleusendosperm proliferation within the FG. Identical to Probable Polycomb group protein EZA1 (CURLY LEAF-like 1) (Protein SET DOMAIN GROUP 10) (EZA1) [Arabidopsis Thaliana] (GB:Q9ZSM8;GB:O04246); similar to CLF (CURLY LEAF), transcription factor [Arabidopsis thaliana] (TAIR:AT2G23380.1); similar to SET domain-containing protein [Oryza sativa] (GB:AAN01115.1); similar to Polycomb protein EZ3 (Enhancer of zeste protein 3) (GB:Q8S4P4); similar to PHCLF3 [Petunia x hybrida] (GB:BAC84952.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.26456787404262 3.25373373270869 0.0108951573555499 1 4.25036956400296 15.7924523379287 0.26456787404262 0.0653431219907979
AT3G06700_at 8.39413335705294 8.7646453637304 7.8064880755051 8.2128105108524 7.51472589513806 7.72652837501774 8.27465295221564 8.94073174543193 8.28277907334649 7.9924634832895 8.08573903949146 8.70790030799873 7.89854139701127 8.25119775326367 8.5603790197849 7.76776007779351 7.7530925136923 7.58179895372546 8.07350658753686 0.139658470293147 0.142383447927773 0.13710170230248 0.141374512324268 0.144332938861392 0.143531229814594 0.147208192188815 0.146542911663148 0.149460350622422 0.14173718336293 0.141195590385065 0.141029163471115 0.139537758152824 0.145209939601325 0.141944848263131 0.144826801498656 0.142145296400457 0.143521176875364 0.139442946338299 3 3|0 -|/ 2117525 2117761 2117628.1 2117355 2118013 - gene protein_coding_gene FALSE TRUE AT3G06700.1|AT3G06700.2|AT3G06700.3 60S ribosomal protein L29 (RPL29A)|structural constituent of ribosome Identical to 60S ribosomal protein L29-1 (RPL29A) [Arabidopsis Thaliana] (GB:Q9M7X7); similar to 60S ribosomal protein L29 (RPL29B) [Arabidopsis thaliana] (TAIR:AT3G06680.1); similar to Ribosomal L29e protein [Medicago truncatula] (GB:ABE83198.1); contains InterPro domain Ribosomal L29e protein; (InterPro:IPR002673) -0.409425611179265 -3.25123192075371 0.0109371908775584 1 4.24686353169377 16.3003649581527 -0.409425611179265 0.15390177683741
AT3G61260_at 10.7402691963564 11.0407448773563 10.8551608975355 10.8941770149485 11.3925606673980 11.2569246586006 10.6985287522543 10.7954950096919 11.3545978150736 10.8951895294054 11.9124051213316 11.2646377789849 11.4798220136334 11.3912252627854 11.5312163016073 11.2737715218088 10.9544827315438 11.2519228955044 11.1940516814218 0.0690198675560764 0.0659061183409146 0.063873894835347 0.0638188854851887 0.0642484301600711 0.0688758908147522 0.0638188854851887 0.0691826557031583 0.0686001011683988 0.0641355109027754 0.0641192261930951 0.0638188854851887 0.0650849450667276 0.0672453548287363 0.0646287263627289 0.0640422485404083 0.0736554362691492 0.0676908765086226 0.0638188854851887 3 3|0 -|/ 22686671 22687602 22687262.444 22686213 22687763 - gene protein_coding_gene FALSE TRUE AT3G61260.1 DNA-binding family protein / remorin family protein similar to DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT2G45820.1); similar to DNA-binding protein (GB:AAA57124.1); contains InterPro domain Remorin, N-terminal region; (InterPro:IPR005518); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.257717731069453 3.2510339812361 0.0109405237424692 1 4.24658610991009 22.2244235319511 0.257717731069453 0.0598497675156542
AT1G63690_at 8.43852529494621 8.73336137654882 8.74861464200768 8.72112663353718 9.71602415647435 9.32005525690454 8.87159473918144 8.7809862964221 9.22279166182503 8.8242409740756 9.43465752784409 9.36872828543775 9.42668991115248 9.47433498094442 9.2593736426932 9.36756295644757 8.75973616060779 9.2500866910788 9.32781056512297 0.112295167254488 0.114845776418596 0.113209449154654 0.112505097191188 0.112623154494958 0.121941172825754 0.115568990043764 0.114364957704049 0.112970732788125 0.119062321893516 0.111532501999463 0.112487573663003 0.109324925861661 0.114597048890587 0.115876931665019 0.109266195006190 0.116970309628984 0.112881931150988 0.112695338891242 1 1 + 23624565 23625709 23625236.909 23622041 23626059 + gene protein_coding_gene FALSE TRUE AT1G63690.1|AT1G63690.2 protease-associated (PA) domain-containing protein similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G01650.1); similar to growth-on protein GRO10 [Euphorbia esula] (GB:AAL14629.1); similar to putative growth-on protein GRO10 [Oryza sativa (japonica cultivar-group)] (GB:BAD22919.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.294018390653764 3.250436795234 0.0109505854800152 1 4.24574909838513 18.1250830511029 0.294018390653764 0.0869907711359836
AT4G24440_at 8.32817263496975 8.37303371188004 8.31817468520456 8.57016308251403 8.40062945115853 8.17000132881776 7.906324269538 8.26636700171542 7.2540263825255 6.85878274780694 7.9012156342004 7.86259130450987 7.54755785017995 7.3764676333813 8.03838583601156 7.39177753970023 7.17530542996718 6.87040155254654 7.13051771827372 0.173181394160387 0.169694341643895 0.178553562104377 0.175883004589974 0.169081053564749 0.178878925910036 0.175698797748737 0.17394514347696 0.175514538119812 0.179251619106536 0.173556677891919 0.175145403665362 0.170897477619583 0.187432674666481 0.175616850065612 0.173764421685493 0.180548172797917 0.177591121967811 0.172075963626152 4 4|0 +|/ 12633470 12634531 12633756.625 12633190 12634770 + gene protein_coding_gene FALSE TRUE AT4G24440.1|AT4G24440.2 transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) Identical to Transcription initiation factor IIA gamma chain (TFIIA-gamma) (TFIIA-S) [Arabidopsis Thaliana] (GB:Q39236;GB:O49348); similar to Os05g0107700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054426.1); similar to transcription initiation factor [Plantago major] (GB:CAJ38374.1); contains InterPro domain Transcription initiation factor IIA, gamma subunit; (InterPro:IPR003194); contains InterPro domain Transcription factor IIA, helical; (InterPro:IPR009083); contains InterPro domain Transcription factor IIA, beta-barrel; (InterPro:IPR009088) 0.29281081521233 3.24944209806755 0.0109673662217214 1 4.24435484970921 15.5923941692735 0.29281081521233 0.0862379797888543
AT2G42030_at 6.9178612556969 7.09410771610057 6.33448758199653 6.72058247877097 7.54825195153809 7.20412208511454 7.14371234625162 7.69412453445156 7.6357567513404 6.90189710674205 7.34673406593505 6.87020828638683 7.0921171518246 7.50896698570378 6.52559434522769 6.87123456111639 6.92805175783788 6.23696170610459 7.68417392304287 0.206727102752312 0.200738949490051 0.225285325220174 0.200347512749367 0.196169422320125 0.203940979050135 0.197431540306768 0.203788842202429 0.2163917107378 0.198684550782432 0.204154728125723 0.198169982588046 0.211281987605950 0.200327997577798 0.222601350904935 0.202405262413413 0.219708916766103 0.208857749677395 0.199731117154107 2 2 - 17546165 17546653 17546438.818 17545986 17548044 - gene protein_coding_gene FALSE TRUE AT2G42030.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G58030.3); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE94537.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.372691379147402 -3.24914228058675 0.0109724294795266 1 4.24393457941853 14.2470360110195 -0.372691379147402 0.134216251180115
AT1G17110_at 7.1659535269544 7.30366731060247 5.80646063451616 6.62737973683542 7.16133279575072 7.03682155531285 7.13282318872367 7.17780798751302 6.99429493208405 7.17842424717823 6.97574049972557 7.16265486162068 6.82417878244607 7.09972494510487 7.00906945388414 7.22408802745679 6.70305239832836 6.71085416324181 7.46949793844776 0.151364943376522 0.152147195439836 0.166325787825414 0.151054933460138 0.140483572436449 0.149597992989179 0.152624927402060 0.140483572436449 0.179353858397071 0.150301659344597 0.147670492061121 0.151151932063890 0.144487007417720 0.150777524183415 0.151884684377220 0.147880013838955 0.148130233024903 0.154090673362035 0.142176287490174 1 0|1 /|- 5845890 5846189 5846054.3 5845668 5850882 - gene protein_coding_gene FALSE TRUE AT1G17110.1 UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT5G65450.1); similar to Os02g0244300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046415.1); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAD28270.1); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.39373315196929 -3.24633843437344 0.0110198988478369 1 4.24000379251941 14.0154022240491 -0.39373315196929 0.145859515285895
AT1G55160_at 7.54624082044858 7.84140732167961 7.18881318768508 7.26838025047409 8.27322307502664 8.05477101886967 7.77934621702123 7.38796578912168 7.76197137426598 6.84080935459057 8.47122162342885 7.74576299593402 7.60978751489019 7.74187520250848 7.79447497891984 7.84415874140266 7.55174129786454 7.65761036449272 7.15168597813799 0.170807288718769 0.169318270309524 0.184196505806656 0.172446467500533 0.175873190542340 0.179020084210872 0.170572039575700 0.173813283900392 0.184375474897601 0.184319944177262 0.171480506313326 0.170209275139418 0.17838491317925 0.186537279328635 0.177520139361239 0.171414776415384 0.182071849552901 0.182390002328453 0.183078270308109 1 1|0 +|/ 20582152 20583434 20582897.667 20582073 20583677 + gene protein_coding_gene FALSE TRUE AT1G55160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19530.1); similar to Os01g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043401.1); similar to Os05g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056501.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44963.1) 0.304073516772370 3.24578897823393 0.0110292263451201 1 4.23923339276666 15.1943024561717 0.304073516772370 0.0938897901241056
AT3G59640_at 5.94012598591608 6.4675278413893 6.74581252806985 6.78254590274724 6.57220532242102 7.15745046343884 5.28046983955961 5.79013173070947 5.26347945713802 5.83038277196417 5.23156338973319 5.0977043023443 5.32018177613471 5.63514105118794 5.17652809349944 5.72262479203045 5.98884612504535 5.17724813158287 5.44655095041478 0.187524437875358 0.181885456678292 0.180048948574675 0.180459934686299 0.18160078474922 0.187968271896244 0.182455731571668 0.182954164141906 0.193939821948668 0.179469420506878 0.179882040115411 0.187226949655463 0.182046272559989 0.185616175454744 0.195589071305677 0.183074530695053 0.186495979618478 0.183982149903540 0.187364640786438 3 3|0 +|/ 22040226 22041225 22040697.8 22039751 22041422 + gene protein_coding_gene FALSE TRUE AT3G59640.1|AT3G59640.2 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43630.1); similar to glycine-rich protein, related [Medicago truncatula] (GB:ABE86768.1) 0.425099176315706 3.2456726467137 0.0110312022336215 1 4.23907027849287 11.8081340855483 0.425099176315706 0.162502768630204
AT1G01510_at 6.51870603688233 6.79204615506211 5.63009809390961 5.63295092782526 6.22558916615045 6.57709929156368 6.65669862512287 6.94789666571427 6.33456133509248 6.53503410055416 6.80161295532145 7.2471892191844 6.49687725769944 6.61209039908376 6.45953024763152 6.51734134991367 6.26724798904942 6.36332970221859 6.58746870914818 0.189896531525983 0.187484943506632 0.184231054737269 0.199666171354336 0.187610004920517 0.199023746437204 0.191484813835821 0.189483663421098 0.196898096602743 0.191433334565482 0.183084778365742 0.189614919020021 0.190928733734989 0.183543678382163 0.185739454166651 0.185152262375474 0.203153708450223 0.200036335579955 0.189273688154002 1 1 + 189031 189645 189327.182 187211 190056 + gene protein_coding_gene FALSE TRUE AT1G01510.1 AN (ANGUSTIFOLIA) Encodes a homolog of human CtBP. Mutant has longer and thicker leaves than wild type. Involved in controlling polar cell expansion in the leaf width direction. similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to angustifolia [Ipomoea nil] (GB:BAC58020.1); similar to Os10g0533000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065152.1); similar to Putative C-terminal binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19105.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.301219079542654 -3.24518852372452 0.0110394290316314 1 4.23839144916133 12.9133058394177 -0.301219079542654 0.0920739653809323
AT4G39780_at 5.52683691046495 5.72587846801408 5.85046159080257 6.23129954521497 5.92479404207883 6.34919958720008 5.99925189471855 6.51749938633429 4.49572512274003 4.91560739026056 4.96083742201918 4.9521099097276 5.95726134797905 5.44295881529346 5.02848612073583 6.01267734713962 6.11796476766314 5.04231540554235 5.07473360612397 0.236712134448277 0.244465962116295 0.240625513109513 0.234191962008674 0.234085918766437 0.241512405183169 0.237282915266725 0.238601488497932 0.25201631473056 0.235612454490352 0.235221612210368 0.23365456685702 0.234227774940437 0.243070349832093 0.23365456685702 0.236281488587703 0.237313174852756 0.242006105228917 0.238947625802471 4 4 - 18458266 18458771 18458490.273 18457951 18459174 - gene protein_coding_gene FALSE TRUE AT4G39780.1 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. similar to AP2 domain-containing transcription factor [Arabidopsis thaliana] (TAIR:AT2G22200.1); similar to DREB2 [Glycine max] (GB:AAQ57226.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.378604856039409 3.24516131237026 0.0110398916300896 1 4.23835329307311 11.1496602272972 0.378604856039409 0.137723205312881
AT3G50860_at 5.39095434985714 5.74523728200271 5.67838997464948 5.50222304524444 6.14811823545 5.76735383639412 6.16178542720841 6.05977926497565 3.81895000200967 3.59075215390545 4.04897848366309 4.26111123885424 4.35083203599667 4.5882452292211 4.41916063570291 4.50971326505304 4.77948580451993 3.99794956276509 3.65325628396317 0.232447549009972 0.219985957185006 0.230088976677593 0.234685235688517 0.227427619858325 0.221560229846332 0.223338569927619 0.227599744379404 0.225190254625357 0.226622050970966 0.219985957185006 0.219985957185006 0.223355553400379 0.234702737411164 0.230379535182532 0.219985957185006 0.229116281604542 0.224904571100223 0.225374313663493 3 3|0 +|/ 18913360 18914506 18913933.5 18912978 18915178 + gene protein_coding_gene FALSE TRUE AT3G50860.1 clathrin adaptor complex small chain family protein similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT2G19790.1); similar to Os03g0228400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049451.1); similar to PREDICTED: similar to CG3029-PA [Tribolium castaneum] (GB:XP_974482.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.308181955301388 3.24362732386661 0.0110660025691096 1 4.23620218305695 9.83527384960513 0.308181955301388 0.096653464828074
AT4G14160_at 8.34828976920756 8.47866542659137 8.39113574440735 8.49274599111458 8.38494104111425 8.04080531567218 8.3959066522785 8.47376937288911 8.2638688535721 8.0240538746417 8.68375431767882 8.81673333821701 8.80105126091736 8.4707884003881 8.68837266796371 8.70643121604235 8.8430370409579 8.55749353855367 7.91198303646077 0.150012177125188 0.148854901185414 0.155542441276618 0.154341749774739 0.147368137398414 0.165917823926873 0.150303369332265 0.153585547264679 0.164146466262401 0.158479245718705 0.157081039642104 0.14996630095746 0.150329889100221 0.161925426579170 0.155622140947950 0.152908726542819 0.160135663504626 0.147368137398414 0.159039396912752 4 4|0 +|/ 8171904 8172995 8172308.2 8167421 8173363 + gene protein_coding_gene FALSE TRUE AT4G14160.1|AT4G14160.2|AT4G14160.3 transport protein, putative similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Vesicle coat complex COPII, subunit SEC23 (ISS) [Ostreococcus tauri] (GB:CAL55059.1); similar to putative Sec23 protein [Drosophila melanogaster] (GB:CAB81549.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900)|similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT1G05520.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Os08g0474700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062030.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.266285842766898 3.24269505082983 0.0110819029082863 1 4.23489473036943 16.7570789029001 0.266285842766898 0.0674279367098673
AT4G16520_at 11.6620927063244 11.7493471761369 12.1273969646039 12.0731417993826 12.3117554792559 11.9669827245336 11.6061602661862 11.6481086409851 12.0908107926362 12.0481496842824 12.2101298677596 11.8882382232885 12.0472562771904 12.2047274755643 11.8910152968197 12.2494346852719 12.081302784676 12.0014152100996 11.8743322503400 0.0834316209336532 0.081678420271103 0.082447103198401 0.083476809695403 0.0836134791037447 0.0871456691472498 0.0821425692907568 0.0828843334996728 0.089819675757887 0.0851563922396223 0.0838587803061849 0.0822149274497392 0.0827586641932592 0.0869181039634646 0.0851491761172244 0.0839264155574123 0.0848331019979912 0.086944147517092 0.084704052155268 4 4|0 -|/ 9306935 9308112 9307312.2 9306686 9308485 - gene protein_coding_gene FALSE TRUE AT4G16520.1|AT4G16520.2 ATG8F (AUTOPHAGY 8F); microtubule binding similar to AtATG8e (AUTOPHAGY 8E), microtubule binding [Arabidopsis thaliana] (TAIR:AT2G45170.2); similar to Light chain 3 (LC3) [Medicago truncatula] (GB:ABE80903.1); similar to microtubule associated protein [Cicer arietinum] (GB:CAD33929.1); contains InterPro domain Light chain 3 (LC3); (InterPro:IPR004241) 0.260325556516714 3.24161941196482 0.0111002781205396 1 4.23338609679985 23.9311836630110 0.260325556516714 0.0626794541618945
AT3G27090_at 11.3896656932003 11.4681864122316 11.6108353364365 11.6815689104778 11.7697624314002 11.6749248198856 11.2031195760881 11.3759897862410 11.0135724525282 11.0093275048312 11.1126236700224 11.1203689294590 11.2822621411503 11.1229526418825 10.9060155160510 11.3733561089759 11.5818151925571 11.1376873039931 11.1512503430269 0.0758415725750186 0.0770948798575352 0.078585582359437 0.0773868044419931 0.0772254887298937 0.0804693274074752 0.075967626546583 0.0772499253084395 0.0866254475256448 0.0809276213627804 0.0804964044799099 0.0755782019271439 0.078906019404917 0.07914476005116 0.076771946202987 0.0755782019271439 0.0807345878432901 0.0821054488749087 0.0779213465315899 3 3|0 +|/ 9991695 9992337 9992009.1 9990777 9993063 + gene protein_coding_gene FALSE TRUE AT3G27090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42050.1); similar to hypothetical protein [Citrus x paradisi] (GB:CAA04664.1); contains domain KELCH-RELATED PROTEINS (PTHR23230); contains domain no description (SM00767); contains domain SUBFAMILY NOT NAMED (PTHR23230:SF15) 0.235808797746196 3.24151429107561 0.0111020756169311 1 4.23323865299392 22.6530992648152 0.235808797746196 0.038714391407703
AT3G24490_at 5.89919909780252 6.45952625117477 5.31699879130456 5.75392089480452 6.47386118648907 5.73611538107164 6.10953612009373 6.35348441641591 6.26220419450811 6.40344554173907 5.81700892970843 5.8075572518268 5.98169152989335 5.89344895294415 5.89144926128595 6.31524906937744 5.97523257670008 5.42712837773732 6.62052723730962 0.226356878606077 0.226020820795713 0.229360711907868 0.224804127099377 0.227712791220267 0.232421067721176 0.227406528967515 0.232029470406826 0.224919183914162 0.225428690870624 0.221409645309320 0.222349031512348 0.228419851673654 0.221409645309320 0.225645822950794 0.221409645309320 0.226402742019936 0.230032861119801 0.221409645309320 3 3 + 8911523 8911940 8911672.091 8910777 8912203 + gene protein_coding_gene FALSE TRUE AT3G24490.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G11100.1); similar to Os01g0718900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044079.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1) -0.46267116106118 -3.2401404093125 0.0111255960872923 1 4.23131151783928 12.1714909681628 -0.46267116106118 0.182213255842825
AT3G52840_at 9.65980182703874 9.6679595765487 9.63644451560302 9.74414012752747 10.2867528078008 9.94471663549593 10.4052765784995 10.1740511858778 9.4457737891796 9.66433413009042 10.2423573341863 10.139708650739 10.3077310147712 10.3382824691979 10.0927822484775 10.224536054477 10.1027815333497 10.1980837798711 9.63942453849976 0.105725374363199 0.103764456938478 0.107962063060430 0.103764456938478 0.104322486023278 0.108593592194040 0.105282290604842 0.105674871165192 0.115510280986199 0.111193076895957 0.113654475710170 0.104021064630417 0.108578804055383 0.105971526990596 0.112954310550110 0.104997920105261 0.107911652895795 0.103780355244007 0.106193962888717 3 3|0 +|/ 19595849 19596853 19596471.889 19592091 19597277 + gene protein_coding_gene FALSE TRUE AT3G52840.1 beta-galactosidase, putative / lactase, putative similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to beta-galactosidase, putative / lactase, putative [Arabidopsis thaliana] (TAIR:AT5G56870.1); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to pear beta-galactosidase1 [Pyrus communis] (GB:BAE72073.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAB21492.1); similar to beta-galactosidase precursor [Carica papaya] (GB:AAC77377.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.274423314663045 3.23958475160245 0.0111351235913567 1 4.23053204111721 19.8343730925775 0.274423314663045 0.0738517380751973
AT2G43360_at 4.89645161236411 4.94678860512027 3.11462171419551 2.63957933220367 3.62459871585689 3.47333176321827 5.66004880021237 5.59567849046013 3.76622171559458 5.11755267578056 6.27377794858539 7.31110967892861 5.72576184638218 6.4199661876755 7.20485430765659 5.40297124941078 4.80078358950819 4.82238382560048 4.67854976762466 0.242591317474127 0.244075271175121 0.237216013786938 0.235925648455201 0.240260239695073 0.247390851550510 0.239117052072544 0.246360472300748 0.246092822812964 0.242168425132516 0.235925648455201 0.235925648455201 0.240212272092927 0.243507352381594 0.246229661979365 0.235925648455201 0.255120842996932 0.248827798274170 0.236052851343758 2 2 - 18018083 18018811 18018388.091 18017828 18020315 - gene protein_coding_gene FALSE TRUE AT2G43360.1 BIO2 (BIOTIN AUXOTROPH 2); biotin synthase Catalyzes the conversion of dethiobiotin to biotin. Identical to Biotin synthase (EC 2.8.1.6) (Biotin synthetase) (BIO2) [Arabidopsis Thaliana] (GB:P54967); similar to biotin synthase [Brassica rapa subsp. pekinensis] (GB:ABI63585.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Biotin synthase; (InterPro:IPR002684); contains InterPro domain Biotin and thiamin synthesis associated; (InterPro:IPR010722); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.293641318059387 -3.23910801484962 0.0111433046916556 1 4.22986324757072 9.50187527864643 -0.293641318059387 0.0874267477687789
AT3G01440_at 5.74527960131764 6.55127053881199 4.76875117521066 5.10119266161482 5.34844801350937 5.13357967656152 7.13030030203368 7.50832665367268 4.67629857828894 6.21755374811889 5.89423589367452 6.73013503135044 6.57634218326552 5.95015166940858 6.77803767444388 6.90970337360821 5.86686351238269 5.79958587598177 5.72366545436271 0.235845266087201 0.238217456430447 0.237768534242507 0.240088428791598 0.244214257395847 0.246193494144118 0.232275140512002 0.242384640015255 0.260364454076164 0.240434799287079 0.233362409906053 0.231346351803521 0.231346351803521 0.245300013457248 0.240956829694689 0.237401342303067 0.247270489903987 0.235634904599476 0.233398609362371 3 3|0 +|/ 168565 169141 168861 168442 169625 + gene protein_coding_gene FALSE TRUE AT3G01440.1 oxygen evolving enhancer 3 (PsbQ) family protein similar to PSBQ/PSBQ-1/PSBQA, calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G21280.2); similar to Os07g0105600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058698.1); similar to photosystem II oxygen-evolving complex protein 3 [Lycopersicon esculentum] (GB:AAU03361.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) -0.435921042030318 -3.23873608994933 0.0111496915212645 1 4.22934147267175 11.8370458255189 -0.435921042030318 0.168602768847135
AT4G02920_at 11.1522760460211 11.2829490450947 11.3188178165885 11.1726392422320 11.6517643276301 11.2730712319236 12.0664208351997 11.8973994206054 11.8494411698394 11.8992058780486 11.6789769789016 11.5217711261452 11.4891054672728 11.5089509475739 11.2276479754958 11.6957118796353 11.5306662196755 11.6213456256195 11.8087745320119 0.085077591738577 0.084718777816214 0.0892693715787564 0.0875354326651131 0.0854959428433865 0.0900906403869515 0.0852057679249523 0.0848004633092506 0.090978227891582 0.0866536915882186 0.086649452575928 0.084718777816214 0.0873484768288918 0.0911523448686569 0.0900909769951031 0.084718777816214 0.088469026410476 0.0882296572440082 0.0873934770335435 4 0|4 /|+ 1294170 1294623 1294370.5 1292523 1294861 + gene protein_coding_gene FALSE TRUE AT4G02920.1|AT4G02920.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03340.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE86673.1) -0.281945007281682 -3.23853904649255 0.0111530767748388 1 4.22906503345476 23.1702901894152 -0.281945007281682 0.0793829316505094
AT2G14835_at 7.56977117918807 7.59291335612273 7.53577037510302 6.75030209797015 7.99587908575252 7.72413957375314 7.25317380833093 7.58260340326174 6.02619126178496 5.78317885217585 6.90347794757707 6.97136908039473 7.42910801438868 6.76417054528044 6.9356439544893 6.6315475774554 6.50108986998282 6.61550243768267 6.2720896217053 0.247064640184062 0.243185778857434 0.256061947537015 0.259851776032081 0.243185778857434 0.247722267539338 0.247516978241065 0.249845438068114 0.252407126133535 0.244514041022804 0.247923380374813 0.248817699198702 0.250088629327308 0.248842160708133 0.253380532998453 0.250936623571111 0.256971074207369 0.245734772042486 0.252388941563509 2 2 + 6376684 6377666 6377178.727 6373972 6378116 + gene protein_coding_gene FALSE TRUE AT2G14835.1|AT2G14835.2 zinc finger (C3HC4-type RING finger) family protein similar to Hypothetical protein [Oryza sativa] (GB:AAK92653.1); similar to Os10g0346200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064398.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.409371389801597 3.23777652365356 0.0111661872335187 1 4.22799522295051 13.9361400717495 0.409371389801597 0.154771464956137
AT3G58620_at 3.58528504991495 3.99317274820938 3.38010922329847 3.72156033532081 4.08182193757852 4.19825428956731 4.17627386497139 4.51266316846704 5.59780147467175 4.52107626207451 8.11014624607903 5.54360043890322 6.27155083627144 6.59769941393782 6.03017753739299 5.73251891777013 3.89821025583834 5.9591878188768 5.28765337761243 0.249070566581691 0.240190239517925 0.257548847491101 0.242346735698617 0.247902567906945 0.240522786265090 0.255122669924703 0.247356376297773 0.248472553982218 0.240190239517925 0.265879509962766 0.240190239517925 0.247311863920008 0.248066733381113 0.241893750967298 0.249120135944266 0.246119339134598 0.240190239517925 0.242991242913033 3 3|0 +|/ 21693110 21693907 21693538.111 21691303 21694112 + gene protein_coding_gene FALSE TRUE AT3G58620.1 TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4); binding similar to TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3), protein binding [Arabidopsis thaliana] (TAIR:AT2G42580.1); similar to Os01g0218200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042410.1); similar to 4D11_10 [Brassica rapa subsp. pekinensis] (GB:AAZ67524.1); similar to Os01g0616300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043576.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.330481900115707 3.23735322590156 0.0111734721735032 1 4.22740131358146 9.5328409794593 0.330481900115707 0.110765190864658
AT2G01420_at 8.9616021421108 8.8404564583506 8.01191398715468 7.99950120423437 9.04459146820252 8.7481681125879 8.77958945603654 9.03572156959257 9.52702389763295 9.0033975165737 9.3345796339233 9.4902534726556 9.41633350114707 9.24470109539513 9.56630302332829 9.4313723315688 8.96369369960573 8.88391498853177 9.60619209581005 0.125636319933426 0.128221608950827 0.142422582396767 0.136699316385685 0.128611622492662 0.139747953256406 0.129155807677487 0.135542692662854 0.13778842542147 0.126011560309279 0.132125684376241 0.127000298899906 0.126729687688082 0.127406870317660 0.129088188266720 0.125636319933426 0.13728036325054 0.139027961077893 0.129918389633269 2 2|0 -|/ 180499 181682 181086.125 180104 183327 - gene protein_coding_gene FALSE TRUE AT2G01420.1|AT2G01420.2 PIN4 (PIN-FORMED 4); auxin:hydrogen symporter/ transporter|PIN4 (PIN-FORMED 4); auxin:hydrogen symporter Encodes a putative auxin efflux carrier that is localized in developing and mature root meristems. It is involved in the maintenance of embryonic auxin gradients. A role for AtPIN4 in generating a sink for auxin below the quiescent center of the root meristem that is essential for auxin distribution and patterning is proposed. In the root, PIN4 is detected around the quiescent center and cells surrounding it, and localizes basally in provascular cells. PIN4 expression is upregulated in brassinosteroid-insensitive mutant (PMID 16141452). Identical to Auxin efflux carrier component 4 (AtPIN4) (PIN4) [Arabidopsis Thaliana] (GB:Q8RWZ6;GB:Q9M7Q6;GB:Q9MAS3); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to PIN7 (PIN-FORMED 7) [Arabidopsis thaliana] (TAIR:AT1G23080.3); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) -0.270387957606932 -3.2367033666619 0.0111846659056231 1 4.22648948796027 18.0128256189213 -0.270387957606932 0.0709947808574274
AT1G68840_at 9.06132406157086 9.07025714529466 6.12531417171972 5.89070320508942 8.37822704387437 8.2601772713185 5.6151657014557 5.7670195380937 7.19165306001614 7.23332555044368 7.39671744323747 8.47696132944548 7.79270500907903 7.0159020675301 7.51842683728536 6.41420549230731 6.56762382111048 6.37111566471652 8.00348181326386 0.210279706615275 0.202350505144199 0.212878673249186 0.202394939794090 0.202196994152507 0.203550278292994 0.195811926934839 0.199890536554795 0.196038734016300 0.203145515240552 0.196733484716583 0.204860763999774 0.195518903277012 0.193257413689279 0.193257413689279 0.193257413689279 0.203658619898377 0.197601496742514 0.201175795057143 1 1 + 25884569 25885115 25884833.727 25883990 25885399 + gene protein_coding_gene FALSE TRUE AT1G68840.1 RAV2 (REGULATOR OF THE ATPASE OF THE VACUOLAR MEMBRANE); DNA binding / transcription factor Rav2 is part of a complex that has been named `regulator of the (H+)-ATPase of the vacuolar and endosomal membranes' (RAVE) similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G25560.1); similar to DNA binding protein Rav [Capsicum annuum] (GB:AAQ05799.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.248391227544409 -3.23595422609095 0.0111975843008721 1 4.2254383018305 14.6062038586339 -0.248391227544409 0.0525235707188741
AT1G67730_at 8.98700105926457 9.08507655903871 8.93532962801681 9.0995650913973 9.57955535198202 9.58229514064706 9.2376881159552 9.51598256841903 9.71857252117876 9.32952420682028 10.1601220534673 10.0382415024412 9.97951891794604 10.0695354481349 10.0968279866207 9.69679004943842 9.24084425385051 9.78203110639836 9.34991447312184 0.108203336858873 0.107247202328387 0.111600854908918 0.115436241320253 0.106336384579550 0.115496593929313 0.107377474795609 0.110283044283782 0.116039755997038 0.107685369171339 0.104198658442976 0.108151333967437 0.103291105534447 0.113841386477875 0.107162155260992 0.105018747488849 0.118185460778222 0.107171237543531 0.10857270395952 1 1|0 +|/ 25395845 25396967 25396594 25395123 25397273 + gene protein_coding_gene FALSE TRUE AT1G67730.1 b-keto acyl reductase, putative (GLOSSY8) similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT1G24470.1); similar to putative 3-ketoacyl-CoA reductase 1 [Brassica napus] (GB:AAO43448.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.254867204210817 3.2355547756689 0.0112044789174060 1 4.22487777200870 18.9273080135872 0.254867204210817 0.0584421254346118
AT4G01070_at 8.48976662807324 8.6871180872636 9.82749136628086 9.83583623580171 9.00543801964581 8.7527830502097 10.1345738273447 10.2821997745457 8.95922721041223 9.23651277029664 10.1202053591741 9.56023811023314 10.0033601793304 9.9555337436596 8.9320135417292 9.41949159927083 9.54394159183632 9.7129765352293 9.0960900680533 0.148013402155557 0.144383136083078 0.149607941899074 0.152852096384891 0.150703443004421 0.150860158455173 0.148327153402432 0.152010621941505 0.152576736225550 0.149522914355990 0.153921802879546 0.142015021250118 0.150912290169961 0.157096117835508 0.154672425580675 0.142015021250118 0.148978312181652 0.143672559972622 0.146322296359399 4 4 - 461904 462413 462219.182 461592 463449 - gene protein_coding_gene FALSE TRUE AT4G01070.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein the glycosyltransferase (UGT72B1) is involved in metabolizing xenobiotica (chloroaniline and chlorophenole). Comparison between wild type and knock-out mutant demonstrates the central role of this gene for metabolizing chloroaniline but significantly less for chlorophenole. The glucosyltransferase preferred UDP-xylose over UDP-glucose indicating its (additional) functioning as a xylosyltransferase in planta Identical to Probable hydroquinone glucosyltransferase (EC 2.4.1.218) (Arbutin synthase) [Arabidopsis Thaliana] (GB:Q9M156); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to Hydroquinone glucosyltransferase (Arbutin synthase) (GB:Q9AR73); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.257832994157433 3.23405248950317 0.0112304485386818 1 4.22276952828457 18.7535242563850 0.257832994157433 0.0610971663651727
AT1G20816_at 5.55706207955672 6.15423898099707 5.45831375380454 5.60665400249263 5.66841965178615 5.75896444714059 6.92806750635349 6.66267537251218 6.10028757474374 6.5365381933983 6.73803387497371 6.9433714217108 5.92006222861751 6.49131542819062 6.83791564890036 6.91922387883404 5.67701314977791 6.00825807370506 6.62532625936278 0.312804842836072 0.284997071183407 0.299243779753150 0.290941286327721 0.294800736714621 0.314754930025460 0.284997071183407 0.306830955424675 0.32340255153691 0.296422698684771 0.289026404144289 0.284997071183407 0.290179375964536 0.284997071183407 0.289576980048358 0.316817688273219 0.313414029391789 0.333003916874090 0.285853845699136 1 1|0 +|/ 7233820 7234715 7234408 7233757 7235117 + gene protein_coding_gene FALSE TRUE AT1G20816.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76405.2); similar to chloroplast channel forming outer membrane protein [Pisum sativum] (GB:CAB58442.1); contains domain Clavaminate synthase-like (SSF51197) -0.340620575230871 -3.23306430371892 0.0112475653631236 1 4.2213826159471 12.4056077521256 -0.340620575230871 0.117020841439140
AT4G29440_at 4.82972162687467 5.17332107138215 4.46495130559049 4.64286340331477 4.49304119462828 4.74836055849316 4.48811137025705 4.90995926207307 5.51109138992309 5.23595732712645 4.89529469787662 5.17536523232882 4.98234596613869 4.90443749197309 4.78067043014649 4.84762146472729 4.50480617550027 5.14073206984228 5.13051251606811 0.192170364756438 0.199575341804371 0.230821930365753 0.218920707777361 0.202112868104709 0.206234052939594 0.195344513929058 0.197553209906204 0.201900439005181 0.205079863904410 0.192940048737067 0.196429918628901 0.198837840192294 0.19974141899458 0.196125591941032 0.20140640118814 0.201597645665137 0.197136338113969 0.205513312446508 4 4 - 14473956 14474494 14474178.455 14473763 14477941 - gene protein_coding_gene FALSE TRUE AT4G29440.1|AT4G29440.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19710.1); similar to MAPK activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82253.1); similar to Os01g0706400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044016.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) -0.325792718556293 -3.22879455757122 0.0113218378496791 1 4.21538882704545 9.81700602512966 -0.325792718556293 0.108467719288648
AT3G54050_at 11.9598802485264 12.0601849434247 11.774635402214 11.5748117038268 12.0218649566038 11.6619428940621 12.6942528101101 12.8223399936109 12.5931713907516 12.6768508331496 12.6907561434282 12.8055037186887 12.5701809648695 12.6805762650649 12.6925917402844 12.7819321195734 12.4105868916678 12.6573657462352 12.4986577398856 0.0808530329353154 0.078962361649617 0.0808211337042353 0.0829180522695774 0.0777496672823194 0.085197388109099 0.0822268414265486 0.0780258049168187 0.0818074458832354 0.0773122354075152 0.077510683351331 0.0774345985403566 0.0789759625787403 0.07932112543559 0.0815361171592404 0.0773122354075152 0.0821251716593264 0.0788273421371025 0.0773122354075152 3 0|3 /|+ 20028850 20029191 20028970.9 20027883 20029758 + gene protein_coding_gene FALSE TRUE AT3G54050.1 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative Identical to Fructose-1,6-bisphosphatase, chloroplast precursor (EC 3.1.3.11) (D- fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (FBP) [Arabidopsis Thaliana] (GB:P25851;GB:Q9M398); similar to fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative [Arabidopsis thaliana] (TAIR:AT1G43670.1); similar to Fructose-1,6-bisphosphatase, chloroplast precursor (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (GB:P22418); similar to fructose-1,6-bisphosphatase precursor [Brassica napus] (GB:AAD12243.1); similar to Fructose-1,6-bisphosphatase, chloroplast precursor (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (GB:Q07204); contains InterPro domain Inositol phosphatase/fructose-1,6-bisphosphatase; (InterPro:IPR000146) -0.27711202447189 -3.2272952222209 0.0113480403971763 1 4.21328361657212 24.6966124623751 -0.27711202447189 0.0766029865618903
AT1G54500_at 10.4351431369792 10.7758212088144 10.0475705088380 10.4966345493842 10.6589134849295 10.1244341550290 11.1968010986279 11.4743172185658 11.3302308446762 11.3595241917960 11.3711160493772 11.2891434764347 11.0466431851195 11.4419003003538 11.1579945859701 11.1262771543442 10.8983600420003 11.2469390238581 11.2996036573291 0.115578859841355 0.109873496068426 0.126618980138272 0.114243388637843 0.108883962260658 0.134469280827293 0.111061431896106 0.108883962260658 0.120809595191109 0.109886461356227 0.115055810654642 0.109991331609266 0.111764250279558 0.111794511855488 0.118887599470071 0.108883962260658 0.116658744144710 0.111835472166675 0.112518878946727 1 1 - 20360770 20361250 20360993.455 20360621 20361455 - gene protein_coding_gene FALSE TRUE AT1G54500.1 rubredoxin family protein similar to putative rubredoxin [Musa acuminata] (GB:ABI23729.1); similar to Os08g0323400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061541.1); contains InterPro domain Rubredoxin; (InterPro:IPR001052); contains InterPro domain Rubredoxin-type Fe(Cys)4 protein; (InterPro:IPR004039) -0.385560997643266 -3.22621921287899 0.0113668839307192 1 4.21177264560311 21.9147458993707 -0.385560997643266 0.142746855250853
AT3G49490_at 8.56114471568954 8.81050398148178 8.97601065973903 8.9594864895455 8.96925533254547 8.90909380076403 8.2843328948092 8.02807059043316 7.98265763026985 8.14172138062971 8.11738280415456 8.13097877568196 8.23130557192677 8.0073391423922 7.54209633200722 8.5732391317591 8.35016074325781 8.100239773907 8.31341301729599 0.162643617291243 0.156852786426427 0.158478874621259 0.15334573291078 0.157880013900206 0.153926342951996 0.155038825252633 0.159759370792501 0.157367908918287 0.160865181019266 0.155047518245455 0.162747126672524 0.149842802645615 0.155027041113637 0.162854358876535 0.152681914436227 0.154753753857294 0.152764913308962 0.163315505571995 3 3 - 18355923 18356463 18356129.727 18355729 18359684 - gene protein_coding_gene FALSE TRUE AT3G49490.1 similar to hypothetical protein MtrDRAFT_AC119415g11v1 [Medicago truncatula] (GB:ABE85164.1) 0.259055316682864 3.22381375338646 0.0114091277800115 1 4.20839435822572 16.8259990383515 0.259055316682864 0.0628126141614957
AT1G55930_at 6.55812371275628 6.60777206215525 6.30193274110838 6.38752512011971 6.87491749533957 6.383552583171 6.49035603948352 6.44350484230438 6.6016460866383 6.5534551503801 6.19160034024136 6.20201691330987 5.97688056082782 6.29977765673385 5.97628950659562 6.26696696777584 6.18171176309589 6.30504837661358 7.0067875497336 0.201514735904304 0.208387060106663 0.214351300777022 0.208596803298295 0.214276278776444 0.220609153003293 0.206106399107366 0.207968791651744 0.213304954069029 0.213496225617653 0.203508792177691 0.201535700630618 0.208992481931837 0.202217762020399 0.199725412352197 0.199725412352197 0.208557931230864 0.211494659048873 0.205593210518712 1 1|0 +|/ 20925168 20925741 20925515 20922382 20925895 + gene protein_coding_gene FALSE TRUE AT1G55930.1 CBS domain-containing protein / transporter associated domain-containing protein similar to CBS domain-containing protein / transporter associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G13070.1); similar to Os03g0593200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050588.1); similar to transporter associated domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT81753.1); similar to CBS domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97418.1); contains InterPro domain Transporter-associated region; (InterPro:IPR005170); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.291775132087481 -3.22355773011165 0.0114136336274218 1 4.20803475579818 12.9537936276714 -0.291775132087481 0.0871181182062069
AT3G62420_at 10.1917043310566 10.6291642532398 10.6128696385480 10.7902274340746 10.5914617960841 10.7837827742999 9.81739973140034 10.2528216183309 9.84137970134048 9.45570694764072 10.0781061284037 9.79255413359573 9.86235271960022 9.95971425095878 9.33521546119191 9.78761887642427 9.8388065584495 9.78273420781765 9.50504201538849 0.114331073836283 0.114215712551143 0.110569911533405 0.117178296476601 0.114311883030246 0.116418506477528 0.118582650840046 0.116757281209039 0.118610583202846 0.116329495772537 0.110569911533405 0.110569911533405 0.115574276567461 0.115515529680347 0.120674437176383 0.110742444488510 0.119281603611989 0.116409338080660 0.119481935432992 3 3 - 23102825 23103222 23102995.545 23102820 23103260 - gene protein_coding_gene FALSE TRUE AT3G62420.1 ATBZIP53 (BASIC REGION/LEUCINE ZIPPER MOTIF 53); DNA binding / sequence-specific DNA binding / transcription factor Encodes a group-S bZIP transcription factor. Forms heterodimers with group-C bZIP transcription factors. The heterodimers bind to the ACTCAT cis-element of proline dehydrogenase gene. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to common plant regulatory factor 6 [Petroselinum crispum] (GB:CAC00657.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.337870582255043 3.22325894710642 0.0114188943716190 1 4.20761508538886 20.1613526205518 0.337870582255043 0.116012024772454
AT3G47295_at 8.56534911390406 9.10712469351216 6.78849712321692 7.2732340161941 8.74862865779869 8.16127280994228 9.06955255509001 9.08404436777403 9.43849192390435 8.8587763663207 10.1442437760112 10.3898413924644 9.71958088363786 9.72137234633201 9.62266764166516 9.36678998470394 8.96436561286445 8.83868181055515 9.37410104263046 0.167247109979416 0.164067559084730 0.207793711014260 0.191236132868395 0.162378468588100 0.178861572671116 0.162893760731237 0.166660279743812 0.169575154448918 0.165754368992212 0.161857657718054 0.160587286479792 0.160587286479792 0.160587286479792 0.161778794482795 0.160587286479792 0.168908298509795 0.175264141919736 0.167123814018232 3 3|0 +|/ 17439053 17439332 17439200.1 17438935 17439496 + gene protein_coding_gene FALSE TRUE AT3G47295.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58650.1) -0.420728188685654 -3.22314639085447 0.0114208768339355 1 4.20745698644579 17.7595792715029 -0.420728188685654 0.1617563649513
AT3G43520_at 9.39909937242547 9.50960962798497 9.89577104227503 10.0552338505856 9.28506770622484 9.14948621331289 9.25326735270214 9.33525952699636 9.06069454806103 9.02087469264907 9.39374379330684 9.3388602027544 8.87734909574858 9.09896281281659 9.47996634349379 9.30132999632453 9.27786958876733 9.31587745923373 8.93610149400437 0.111251018861904 0.109030152332093 0.114802356048217 0.110160211702064 0.111704841192053 0.109625920950947 0.116401464122962 0.109239865930126 0.121504427693288 0.115344162268482 0.107900374515959 0.107783280078453 0.106699592108742 0.114758807835827 0.113694752855088 0.105373390642826 0.116231264975540 0.121347293432514 0.112061860159830 3 3|0 +|/ 15417266 15418616 15418004.2 15417011 15418896 + gene protein_coding_gene FALSE TRUE AT3G43520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26240.1); similar to Os04g0653100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054104.1); similar to transmembrane protein 14C [Argas monolakensis] (GB:ABI52790.1); similar to Os03g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050510.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.238342699861622 3.22168081337968 0.0114467230389456 1 4.2053982795238 18.6185419147937 0.238342699861622 0.0433487119955981
AT1G48140_at 6.9611245095247 7.08827372817425 6.76253546853668 6.87307342981656 6.79890432023332 6.86736936247984 5.85034347485725 6.37200310116397 5.3616820678664 5.82850150364669 5.99114578120572 5.93123528654602 5.91706353146964 6.31193979159821 5.86350219772753 5.9882657343008 6.08580013113972 5.27459000851606 5.51777969030856 0.198635253830858 0.195492068572782 0.201111625220601 0.195492068572782 0.206039652417276 0.208800533733082 0.201232567014425 0.203270392904480 0.213188034636882 0.204244057580077 0.195492068572782 0.205756080726595 0.195492068572782 0.203849184780204 0.213865914486652 0.204087989139901 0.195623981555147 0.199183049105935 0.195702361857448 1 1|0 +|/ 17787093 17787541 17787275.5 17785711 17787880 + gene protein_coding_gene FALSE TRUE AT1G48140.1 dolichol-phosphate mannosyltransferase-related similar to unknown [Vitis vinifera] (GB:AAP30738.1); contains InterPro domain Dolichol-phosphate mannosyltransferase subunit 3; (InterPro:IPR013174) 0.304328081187816 3.22024684626214 0.0114720709691843 1 4.20338375119519 12.4415853718917 0.304328081187816 0.0956041727424758
AT3G07100_at 8.13756614837272 8.26323085069275 8.10098673839374 8.423607177946 8.21618399454807 7.9250165646365 7.79661907650336 7.91686032296666 7.63379754760519 7.34893163403519 7.88104115051584 7.8933025633789 8.07778355345555 8.06537978699586 7.7714399158008 8.25121500468305 8.27959153553142 7.28840759296602 7.55188207483329 0.180737728810449 0.183890297206800 0.183205496822388 0.181667769409443 0.179088143484446 0.197758117728928 0.179088143484446 0.190690715779160 0.198362409505153 0.185613128515161 0.183255902466215 0.179088143484446 0.179088143484446 0.190716785017423 0.187459489394046 0.179088143484446 0.186998849367067 0.196859506951967 0.188688250841782 3 3|0 -|/ 2245713 2246450 2246185.4 2245170 2250700 - gene protein_coding_gene FALSE TRUE AT3G07100.1 protein transport protein Sec24, putative Identical to Protein transport protein Sec24-like At3g07100 [Arabidopsis Thaliana] (GB:Q9SFU0;GB:Q56WS8;GB:Q8L7A7); similar to CEF (CLONE EIGHTY-FOUR), transporter [Arabidopsis thaliana] (TAIR:AT3G44340.1); similar to Vesicle coat complex COPII, subunit SEC24/subunit SFB2 (ISS) [Ostreococcus tauri] (GB:CAL57339.1); similar to Os04g0129500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052091.1); similar to OSIGBa0131J24.5 [Oryza sativa (indica cultivar-group)] (GB:CAH65927.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.282431285835957 3.21791631914059 0.0115133924513023 1 4.20010920513457 15.8225374709610 0.282431285835957 0.0810058502052735
AT1G63460_at 7.50025019706218 7.98669931205972 7.55456328768023 7.50848641740599 7.5302215011646 6.91590622897874 6.1938150166025 6.20439712394896 6.50642610194771 6.73202395981598 7.51356114428637 7.51637251687685 6.66493168079946 7.09354595153663 6.67277148753688 6.67689918864099 6.93907874826898 6.69495425324067 6.6620756291954 0.263568067588074 0.24560028320023 0.248576599782052 0.253065279777926 0.242565365921524 0.257328786596616 0.246591744972735 0.250834835656811 0.280791704134445 0.254424795986299 0.251138285821327 0.24384482971559 0.249887496518517 0.256644448438672 0.246754653048854 0.247532257757776 0.251381316275766 0.243666099595540 0.243159797615814 1 1|0 +|/ 23539218 23539967 23539635.333 23538681 23540132 + gene protein_coding_gene FALSE TRUE AT1G63460.1 glutathione peroxidase, putative Identical to Probable glutathione peroxidase 8 (EC 1.11.1.9) (GPX8) [Arabidopsis Thaliana] (GB:Q8LBU2;GB:Q9SH32); similar to ATGPX6 (GLUTATHIONE PEROXIDASE 6), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G11600.1); similar to Glutathione peroxidase [Medicago truncatula] (GB:ABE92132.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.372004877067186 3.21755411086248 0.0115198285521712 1 4.19960022582962 13.9768038531386 0.372004877067186 0.135850782896964
AT1G65430_at 8.09581330399303 8.10317955378152 8.11440781085502 8.13319483501448 8.54404434302563 8.19197569593906 8.27010917876186 8.14877502949605 6.90403172189717 7.25093056223885 7.67744996748984 7.5455786413159 7.52313489076564 7.5524472285231 7.24122310543139 7.65230866562294 7.89708902095528 7.34607862378274 7.21906884354218 0.175636425855315 0.176472148206921 0.170249878969041 0.182612230688522 0.182617029351131 0.17828977903404 0.181269661016853 0.178762828335020 0.191726193503082 0.172542866911788 0.179547824033248 0.176363810483443 0.173859374839433 0.182268818314017 0.185018073966041 0.175023279649420 0.178647560777276 0.180289620814219 0.175925256381588 1 0|1 /|- 24304854 24305922 24305153.2 24304561 24309899 - gene protein_coding_gene FALSE TRUE AT1G65430.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G05890.1); similar to IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) [Arabidopsis thaliana] (TAIR:AT2G31510.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); similar to ARIADNE-like protein [Musa acuminata] (GB:AAR96008.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.260586565063442 3.21690273196731 0.0115314124078019 1 4.19868486509377 15.5397328741310 0.260586565063442 0.0645383748578773
AT3G29185_at 8.81712129336508 8.74823753558573 7.77465141688139 7.94490391285917 9.14455863178728 8.03536859239099 9.20457004723496 9.1144889818709 8.88474534684076 9.01463965083234 8.93066972409804 9.15145431690228 8.72670202105884 8.78059907982483 9.10557490634207 8.96885283475411 8.16425133662907 8.38192584527495 9.09927376507245 0.154547868771193 0.153560266938494 0.170432127492986 0.156143936103550 0.148045836551212 0.165990662728997 0.153119131395122 0.156541261305822 0.160055360898465 0.151277015766967 0.146216407115702 0.151839130809661 0.151883712288485 0.152379711036342 0.154306064477571 0.146114570418190 0.156720104615181 0.155215835833252 0.146114570418190 3 3|0 -|/ 11156352 11157010 11156657 11156166 11158463 - gene protein_coding_gene FALSE TRUE AT3G29185.1|AT3G29185.2 similar to hypothetical protein MtrDRAFT_AC147482g2v1 [Medicago truncatula] (GB:ABD32485.1) -0.48476649441956 -3.21595879110717 0.0115482206760532 1 4.19735829601233 17.4858908910098 -0.48476649441956 0.195187558720998
AT2G31800_at 9.62327621655535 9.52359055260211 9.6704634887623 9.50944115982972 10.2599271059458 9.72258025585892 9.0999547358131 8.40438515760559 9.58121327314197 9.11686734469304 9.68676458016813 9.44211800296012 9.26820650163379 9.56332661804701 9.41300585713688 9.60499539841221 9.24160254308575 9.7407102148775 9.22477976779189 0.105711746537271 0.104129167150366 0.104100540235627 0.110032933937474 0.100905874248490 0.108417143908503 0.101504895496579 0.114569883187636 0.107972380449656 0.105492898469428 0.108002650544093 0.104359449375986 0.100178936552667 0.107874852358425 0.106083488792817 0.104408988435891 0.11239957940989 0.101532276261569 0.102879303424267 2 0|2 /|- 13527902 13528844 13528406.625 13527402 13530785 - gene protein_coding_gene FALSE TRUE AT2G31800.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative (APK1) [Arabidopsis thaliana] (TAIR:AT2G43850.1); similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G59830.1); similar to ankyrin protein kinase [Brassica napus] (GB:AAT94403.1); similar to ankyrin protein kinase [Brassica rapa] (GB:AAT94402.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06433.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.407636211476517 3.21180919051417 0.0116224147487090 1 4.19152551392887 18.8780580056628 0.407636211476517 0.155597614060824
AT4G16370_at 9.35291266024116 9.43414042285724 8.72043590487857 8.842386082205 9.91755489973682 9.65991592447 9.6866406841799 9.75401912344424 10.1318537129388 10.4496396488438 9.78469111165007 10.0907505687361 10.1847658389192 10.2105088735277 9.71688309599285 10.1409575687378 10.0596488638977 9.70553427995042 10.0424464383962 0.0913009172216322 0.0850051774921148 0.0897109952848775 0.0926592427772069 0.084490931935324 0.0910375558170558 0.08583224958384 0.0881885388241342 0.0884024678764167 0.086309477047145 0.0896008745689653 0.086240217872353 0.0840056673131342 0.0915511685511952 0.0906824133028685 0.0840056673131342 0.09202553410055 0.088542063318633 0.0870359073374656 4 4 - 9247628 9247959 9247819.182 9247321 9250112 - gene protein_coding_gene FALSE TRUE AT4G16370.1 ATOPT3 (OLIGOPEPTIDE TRANSPORTER); oligopeptide transporter oligopeptide transporter similar to ATOPT2 (oligopeptide transporter 2), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G09930.1); similar to ATOPT4 (oligopeptide transporter 4), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G64410.1); similar to oligopeptide transporter OPT family protein [Musa acuminata] (GB:ABF70152.1); similar to Probable oligopeptide transporter 3 (AtOPT3) (GB:O23482); similar to glutathione transporter GT1 [Brassica juncea] (GB:CAD91127.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) -0.246558714037241 -3.21103156950707 0.0116363738009625 1 4.19043226554297 19.5183494420363 -0.246558714037241 0.0526005026233922
AT1G14820_at 7.40782033757495 7.28919904513902 5.89901371143025 5.47428747800663 6.98919775424619 7.04466923421576 5.44881252890851 5.18711283659274 4.97826124634941 4.73341581705810 5.32777178321967 5.41165739355136 4.57676749249289 5.20743201773998 5.4948375224266 4.67985041188723 5.24586932971988 5.10490469117112 3.97504821974702 0.252135988000856 0.255374734125224 0.262861611082034 0.251814044415270 0.246293744698739 0.258459245325015 0.252268465433319 0.250097955568351 0.259505586488818 0.246484123123039 0.245799083248809 0.246909044524986 0.250919642991481 0.246673478184652 0.245799083248809 0.248826623017934 0.260349044372872 0.261470978133355 0.248716061072310 1 1|0 -|/ 5105247 5106304 5105784.2 5105013 5106949 - gene protein_coding_gene FALSE TRUE AT1G14820.1|AT1G14820.2|AT1G14820.3 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G01630.1); similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE80207.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.293725213322743 3.21008271416812 0.0116534304111590 1 4.18909819338879 11.1892031614281 0.293725213322743 0.0892578308582261
AT2G35260_at 11.1118031703415 11.2994118085967 11.1339935091461 11.1311750323769 11.5671313817951 11.2458555905166 12.0141187000188 11.9381937483805 11.6775044363478 11.6162817466388 11.6256379091092 11.4326905524697 11.4824613862722 11.4103795344513 11.2989002747392 11.6753023611374 10.9687909082117 11.3824741624942 11.5394880625254 0.094493368959665 0.0870684276822105 0.087013868963612 0.0862627134100578 0.0874370064795108 0.0930570406347996 0.0883535903715928 0.0875766553350875 0.0978721368841394 0.0867881711306308 0.085972647763811 0.0854691864564518 0.0868471557560342 0.0893992423344667 0.085554753918498 0.085987380266033 0.112452017639133 0.0940158230158677 0.0854691864564518 2 0|2 /|+ 14857635 14858397 14858007.75 14856615 14859048 + gene protein_coding_gene FALSE TRUE AT2G35260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G17840.1); similar to hypothetical protein 40.t00061 [Brassica oleracea] (GB:ABD65174.1) -0.261427378717896 -3.20952166842815 0.0116635280507754 1 4.18830932883497 22.9405458932872 -0.261427378717896 0.0657124078405782
AT1G20100_at 9.5490597076778 9.56226030204817 9.78082976164028 9.66309505392907 9.5141918264751 9.24432209119031 8.80919143864202 8.91711482769504 8.40606894024698 8.30111633616913 8.66273699096288 9.05081481734106 8.4677868226744 8.39790802497385 8.39636080749995 8.63880628399441 8.56242770173553 8.3067772781333 8.50821066307945 0.174284281031159 0.173942794637836 0.175524050910021 0.174095755505617 0.17583645144009 0.176467944850859 0.182784556999 0.171934878834963 0.187849294405464 0.176429919457011 0.178803611055162 0.171934878834963 0.182743659748313 0.180630259569317 0.17786397161573 0.171934878834963 0.181776490347532 0.176925417386780 0.176699455382265 1 1 - 6969307 6969912 6969585.818 6969098 6970947 - gene protein_coding_gene FALSE TRUE AT1G20100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75860.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79676.1) 0.24826173768775 3.2095201167845 0.0116635559897619 1 4.18830714708279 17.8628002865354 0.24826173768775 0.0543162461241135
AT3G56760_at 4.67912629047654 4.82282232955932 3.75114002251464 3.79072225207734 4.19395263989299 4.60845795600878 4.52890315677787 5.22644189958412 4.88265891115135 4.98005314491077 5.10375398277800 5.52820372224194 4.53074730858273 4.97533356559113 5.05854305072978 5.15859125755482 4.44781346700612 4.66995259386711 5.05587636540004 0.234570580109964 0.224210672911167 0.238196225949303 0.223977413794075 0.221214099142898 0.228804816717459 0.229067653736462 0.225205816290881 0.232576727374005 0.221232307703263 0.221969702242692 0.221214099142898 0.231477069334778 0.226144403964576 0.235577411882699 0.222429057125297 0.234527848003511 0.225133498298127 0.226703999468965 3 0|3 /|- 21031645 21032474 21032014.625 21031537 21034735 - gene protein_coding_gene FALSE TRUE AT3G56760.1 calcium-dependent protein kinase, putative / CDPK, putative similar to CRK (CDPK-related kinase), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT3G50530.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G19100.1); similar to CRK1 (CDPK-RELATED KINASE 1), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41140.1); similar to putative calcium/calmodulin-dependent protein kinase CaMK [Oryza sativa (japonica cultivar-group)] (GB:BAC16472.1); similar to CDPK-related protein kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96128.1); similar to Protein kinase [Medicago truncatula] (GB:ABD33022.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.383500320043064 -3.20867696240745 0.011678748225636 1 4.18712155737942 9.40368590621045 -0.383500320043064 0.142766453941866
AT1G71010_at 7.01907620355894 7.01728416270261 6.55659143917438 6.78376411902291 7.77411924034021 7.40509844893765 7.23497173844555 6.96358399179765 6.87063073107597 7.41708705473577 7.9203019848089 8.30775466025716 7.78383085909096 7.99689937089468 7.38873840799761 7.9839625148632 7.50913066044048 7.691659266766 7.63970505682407 0.204228009901023 0.218621448399437 0.22049764892944 0.210675382962601 0.206805781936597 0.211991089637949 0.208390993058928 0.204673834836487 0.210345608487974 0.204331206335207 0.209681918898303 0.209495455047326 0.203418402583608 0.203411929036723 0.213888150092656 0.210676782352009 0.225745793866625 0.203411929036723 0.213504071440975 1 1|0 +|/ 26791633 26792343 26792122.6 26786501 26792630 + gene protein_coding_gene FALSE TRUE AT1G71010.1 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G33240.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34260.1); similar to finger-containing phosphoinositide kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46198.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498) 0.292404027918601 3.20820768823301 0.0116872127192330 1 4.1864616613076 14.6602739995901 0.292404027918601 0.0884846436635357
AT3G61870_at 9.92678810101838 9.8869416003242 9.48301623339992 9.37267550317267 9.44206116380944 9.23807881712384 10.6414750817713 10.5565301086456 9.94945893469811 10.9423217163259 10.7766555834369 11.0633675228920 10.4403507238319 10.7138130300686 11.1748679610482 10.9011881828964 10.7415282871616 11.0775767526402 10.5074328965285 0.0880046248417705 0.0868727131696919 0.0976195793924686 0.0969034041962696 0.0870616557973394 0.0930038277381957 0.089359214062292 0.0880304043055736 0.0976761746637192 0.0918314103242493 0.088543503442732 0.0879846027773881 0.089124620247575 0.0917892913829832 0.0976853612011869 0.087001461863364 0.0927280470033097 0.0892932476450019 0.0923421207036145 3 3|0 +|/ 22914069 22914809 22914432.5 22913613 22915045 + gene protein_coding_gene FALSE TRUE AT3G61870.1|AT3G61870.2 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93513.1) -0.237105901958635 -3.20562588848412 0.0117338965023500 1 4.18283070099836 20.4822323368321 -0.237105901958635 0.0432938591954172
AT3G51260_at 9.32183647276654 9.24067954886862 9.73780961901722 9.6691682457505 9.58955352127457 9.28792985634392 9.57082784956612 9.34121262736933 9.02079168557827 8.9917691817189 9.21209404073806 9.1275876821094 9.09988636807492 9.25308577923468 9.3182791791351 9.15780494275478 9.06921600081153 9.11863271875854 8.5188749878771 0.113364708366091 0.112266648265276 0.115337193859029 0.112054403444484 0.111096000843011 0.123281004839286 0.114924802235011 0.116971471097413 0.120388721711260 0.114247682451470 0.110368209443167 0.112553646909931 0.112524199818239 0.109663037528341 0.116101386631249 0.111134488804849 0.118957685743646 0.108042068699488 0.120110793243667 3 0|3 /|+ 19042801 19043150 19042967.2 19041974 19044043 + gene protein_coding_gene FALSE TRUE AT3G51260.1|AT3G51260.2 PAD1 (20S proteasome alpha subunit D1); peptidase 20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase. Identical to Proteasome subunit alpha type 7-A (EC 3.4.25.1) (Proteasome subunit alpha type 4) (20S proteasome alpha subunit D-1) (TAS-G64) (Proteasome component 6A) (PAD1) [Arabidopsis Thaliana] (GB:P30186;GB:Q41942;GB:Q8LB36); similar to PAD2 (20S proteasome alpha subunit D2), peptidase [Arabidopsis thaliana] (TAIR:AT5G66140.1); similar to proteasome, alpha subunit-like protein [Solanum tuberosum] (GB:ABA40445.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426)|Identical to Proteasome subunit alpha type 7-A (EC 3.4.25.1) (Proteasome subunit alpha type 4) (20S proteasome alpha subunit D-1) (TAS-G64) (Proteasome component 6A) (PAD1) [Arabidopsis Thaliana] (GB:P30186;GB:Q41942;GB:Q8LB36); similar to PAD2 (20S proteasome alpha subunit D2), peptidase [Arabidopsis thaliana] (TAIR:AT5G66140.1); similar to proteasome-like protein alpha subunit-like [Solanum tuberosum] (GB:ABB86280.1); similar to proteasome, alpha subunit-like protein [Solanum tuberosum] (GB:ABA40445.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.264118786590638 3.20553206564611 0.0117355966596368 1 4.18269873825044 18.4765698629580 0.264118786590638 0.0681312650828784
AT4G35950_at 6.41471775483446 6.43252598644577 5.56463692312305 5.65796677501552 6.20788114168877 6.2364279508425 6.53050933475287 7.09644850508182 7.16796795013815 6.94814755794354 7.3507576693538 7.69991763600524 6.68709125989363 7.22152259063527 7.55332940380694 6.91501089859589 6.7029858942693 6.94957011692158 7.03597917087905 0.185582379284878 0.181276445967208 0.191641976043801 0.18787916354654 0.188453701435812 0.180742356018990 0.180894078998333 0.184086130136617 0.192435963854648 0.187173539538849 0.191961382757110 0.181263957952346 0.187666124600818 0.182787825056136 0.178338037580867 0.180671776278995 0.195198135667186 0.182279109498578 0.191838524916013 4 4|0 -|/ 17024059 17025477 17024629.444 17023840 17025866 - gene protein_coding_gene FALSE TRUE AT4G35950.1 ARAC6/AtROP7/RAC2 (rho-related protein from plants 7); GTP binding A member of ROP GTPases gene family-like. GTP binding protein Arac6. Identical to Rac-like GTP-binding protein ARAC6 (GTPase protein ROP5) (ARAC6) [Arabidopsis Thaliana] (GB:Q9SBJ6;GB:O65632); similar to ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) [Arabidopsis thaliana] (TAIR:AT2G17800.2); similar to putative ROP family GTPase [Brassica napus] (GB:AAO11654.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.308748620123156 -3.20387585652254 0.0117656511217531 1 4.18036911025354 13.3605000014758 -0.308748620123156 0.0994318637193494
AT4G36400_at 6.31347704696503 6.91263906927416 6.70576752125079 7.20960722228444 7.81052835174423 7.35546492023548 6.86699880499749 6.49717926140649 6.11917570967902 6.13068359206572 5.927240484195 5.74510431009899 6.28566769956053 6.12715351118391 6.10087744654776 6.35033136183052 6.43069608865133 6.68657551059697 5.64358309489795 0.221946268649784 0.206555483045139 0.220000993966571 0.227472481154775 0.212005556196558 0.224822847614607 0.209556836656108 0.216431147488777 0.219158309944364 0.207929693426213 0.207275738155520 0.209896159000575 0.211704358168506 0.220915539941365 0.207166413984802 0.206555483045139 0.234156371140151 0.214751072507799 0.210628369615922 4 4|0 +|/ 17199447 17200432 17199886.5 17197215 17200924 + gene protein_coding_gene FALSE TRUE AT4G36400.1|AT4G36400.2 FAD linked oxidase family protein similar to FAD linked oxidase family protein [Arabidopsis thaliana] (TAIR:AT5G06580.1); similar to putative actin interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79943.1); contains InterPro domain FAD linked oxidase, C-terminal; (InterPro:IPR004113); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094) 0.432496730460087 3.2038654293693 0.0117658405930074 1 4.1803544424733 13.0445510750018 0.432496730460087 0.169266463845552
AT1G51600_at 5.80120243288326 6.2618837129994 5.92372975023703 6.12961494946376 6.00116987415108 6.38220799085170 5.52257797492783 5.46226281058912 5.67916455334867 5.03349101448547 5.34872774142715 6.01379188764841 5.60479050946102 5.4385220753108 5.59916536962541 5.57456447993839 5.62364991443151 5.53936167414607 5.1542297373988 0.231448182745031 0.227542735963656 0.229480643842759 0.224106270514430 0.233459893601450 0.241778362657432 0.224106270514430 0.224106270514430 0.232524707268967 0.239021811503330 0.224106270514430 0.233382911166072 0.224974992181541 0.225130402160756 0.22656487681207 0.226139255695225 0.227684993182264 0.225777248442352 0.230149496349551 1 1|0 +|/ 19137329 19138720 19137838.333 19135889 19139209 + gene protein_coding_gene FALSE TRUE AT1G51600.1|AT1G51600.2 ZML2 (ZIM-LIKE 2); transcription factor member of a novel family of plant-specific GATA-type transcription factors. Identical to GATA transcription factor 25 (ZIM-like 2 protein) (ZML2) [Arabidopsis Thaliana] (GB:Q8H1G0;GB:Q94AN8;GB:Q9C541); similar to ZML1 (ZIM-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G21175.1); similar to male-specific transcription factor M88B7.2 [Marchantia polymorpha] (GB:AAT12424.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain ZIM; (InterPro:IPR010399); contains InterPro domain CCT; (InterPro:IPR010402) 0.325529423206805 3.20252494332698 0.0117902250601642 1 4.17846869740346 11.3764729244677 0.325529423206805 0.109919538626406
AT4G10970_at 9.3235922074069 9.28455100606338 9.71581500887521 9.6122025631151 9.46442989709531 9.59681408639618 8.64931420509286 8.54268575935402 9.37565438280535 9.0367653863974 9.2273166389641 8.93381697901528 8.67990556178757 9.1616487147794 8.75143835910087 9.02309004326175 8.98965844739833 9.14106766777654 9.11434347986173 0.112884986013789 0.112933220590197 0.112276209176461 0.112943016369525 0.115029154762052 0.113648508317297 0.117281449016802 0.119239526695349 0.119387907804553 0.11689991097759 0.111328439741204 0.116057094184921 0.125550689431051 0.114187034714839 0.111475272006409 0.114793052849817 0.117936995092354 0.113780989411797 0.115685425614034 4 4|0 -|/ 6719716 6721502 6720490.222 6719203 6722216 - gene protein_coding_gene FALSE TRUE AT4G10970.1|AT4G10970.2|AT4G10970.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G23910.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05314.1) 0.230092323106742 3.20152733288389 0.0118084066197722 1 4.1770651735804 18.3557158672742 0.230092323106742 0.0351070521823624
AT3G12685_at 5.3582889563714 5.35724439627305 5.05624386506227 4.81748507028595 5.33935912345995 5.17936952083292 5.86974720335598 6.26415410294374 5.38442491059867 5.20461968551404 5.20126113412159 5.68334826443512 5.12673157046306 5.6592628957758 5.97397783325254 5.72092382332319 4.57712422607173 5.35820261003585 5.5213422567886 0.223064234702686 0.206749599480677 0.225609960575977 0.233045025662845 0.205010688967262 0.225822310817701 0.209741144692860 0.220109357225204 0.220017752241160 0.206469260744679 0.207938596473239 0.205491319001933 0.205259055661687 0.210888494207091 0.211108592238102 0.208122393504825 0.241934889705054 0.211594952239419 0.210486856129037 3 3 - 4029259 4030193 4029851.636 4029190 4030362 - gene protein_coding_gene FALSE TRUE AT3G12685.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24350.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABE86902.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) -0.285884588054004 -3.20130114168657 0.0118125330509271 1 4.17674693382633 10.7966030276491 -0.285884588054004 0.084453571112301
AT2G32260_at 8.28765384726719 8.31595355006534 8.84432293746488 8.63501246212598 9.0906905534025 8.57527976508568 8.69868792482454 8.10308979813268 7.97609583599939 7.95838445160746 8.43458123863297 8.22472426955683 8.44024619137276 8.42947529750125 7.96398061982933 8.44696549590942 8.44613733706785 8.2334246000798 8.07506193831035 0.156126784992262 0.148031340329667 0.149832657044338 0.151853903806462 0.150881936988785 0.151383642393094 0.154519148599152 0.167986265488906 0.164950520211378 0.161936417383387 0.160930814122113 0.148031340329667 0.159222741125678 0.154591084931739 0.157911109540526 0.150992191001732 0.153554085471352 0.151153549494846 0.16303454543174 2 2|0 +|/ 13705823 13707195 13706611.3 13704593 13707718 + gene protein_coding_gene FALSE TRUE AT2G32260.1 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative similar to cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G15130.1); similar to CTP:phosphocholine cytidylyltransferase (GB:AAA93035.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.379620644359351 3.20123292602560 0.0118137778124368 1 4.17665095672845 16.7341476664042 0.379620644359351 0.141121506002092
AT2G31790_at 9.14928921471661 9.26110401080146 8.71097569361549 8.90379273997293 9.00010178526673 8.84962958364848 9.91239381099993 9.86927955427174 8.24896764215234 9.53488489853834 9.29438532835932 9.17235099115765 8.93465916759495 9.06101225128881 8.69392350501494 9.07975813357123 9.40103556274114 9.21658340730935 8.93094409077471 0.131872598823058 0.135846069627376 0.128943447201263 0.126861021200017 0.137328806847066 0.135921351450994 0.135405069668520 0.133496595692893 0.158780293730041 0.132778611365157 0.125440656005965 0.133979389740707 0.143940428773711 0.144693807289646 0.136962634576414 0.132785801299190 0.134682779495255 0.140303878104193 0.135392588858560 2 2 + 13526665 13526983 13526837.818 13525288 13527441 + gene protein_coding_gene FALSE TRUE AT2G31790.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-xylose phenolic glycosyltransferase [Solanum lycopersicum] (GB:CAI62049.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.24005518209016 -3.19753550494713 0.0118814516974683 1 4.17144807905469 18.2128936760957 -0.24005518209016 0.0471337130732529
AT1G06570_at 9.54094713757721 9.76769975214604 10.1406219673772 10.0569025197033 10.0134472054001 10.1033158776959 10.5880979922412 10.6694426170717 10.2366715257023 10.3539875772898 9.93546997437698 9.49048607947194 9.94959868096986 10.0749563305895 9.24765557272055 10.2283445929530 10.0759478246066 9.858771097121 10.2306428550452 0.0825158897862358 0.0773714406260338 0.0808044005566036 0.0789681935160155 0.080474368489802 0.0816689708712644 0.0850336334613256 0.078693486878101 0.0829529978508963 0.0789799046497707 0.0773714406260338 0.0817846976157679 0.0785921042183385 0.0773714406260338 0.0873787398977346 0.0773714406260338 0.08237851648627 0.0797784800823856 0.0820603188732847 1 1|0 -|/ 2012057 2012696 2012451.5 2011884 2013544 - gene protein_coding_gene FALSE TRUE AT1G06570.1 PDS1 (PHYTOENE DESATURATION 1) Mutation of the PDS1 locus disrupts the activity of p-hydroxyphenylpyruvate dioxygenase (HPPDase), the first committed step in the synthesis of both plastoquinone and tocopherols in plants. Identical to 4-hydroxyphenylpyruvate dioxygenase (EC 1.13.11.27) (4HPPD) (HPD) (HPPDase) (4-hydroxyphenylpyruvic acid oxidase) (HPD) [Arabidopsis Thaliana] (GB:P93836;GB:O04330;GB:Q9SHK1); similar to Chain A, Structural Basis For Inhibitor Selectivity Revealed By Crystal Structures Of Plant And Mammalian 4- Hydroxyphenylpyruvate Dioxygenases (GB:1SQD); similar to 4-hydroxyphenylpyruvate dioxygenase [Medicago truncatula] (GB:AAX59006.1); similar to 4-hydroxyphenylpyruvate dioxygenase [Brassica rapa subsp. pekinensis] (GB:ABI63586.1); contains InterPro domain 4-hydroxyphenylpyruvate dioxygenase; (InterPro:IPR005956); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) -0.239544266229760 -3.19502871040377 0.0119275637771522 1 4.16791979159493 20.1757699278751 -0.239544266229760 0.0467948964005487
AT1G14890_at 6.71061319764804 7.10661537102239 4.54522889872876 4.56267550537805 6.63449539299893 5.93978104908864 5.36696394568522 5.46675470240776 7.5218270542597 6.24748233154723 8.63372753644514 9.22730282237142 6.78985766057836 8.78494215168538 9.3970258261317 8.57694701794273 7.48191004349969 8.62073765604201 7.06567854463309 0.242467086333815 0.232525529639712 0.241427075313614 0.236546950699223 0.238166359297321 0.238427181248365 0.232525529639712 0.244007199989744 0.244667842869748 0.238099407080057 0.235229125860074 0.233464196740655 0.239839326739556 0.239217787902989 0.240493200203733 0.232525529639712 0.247535145978073 0.234948821364558 0.243836325489158 1 1 + 5137110 5137665 5137402.909 5137048 5137926 + gene protein_coding_gene FALSE TRUE AT1G14890.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G01610.1); similar to 21 kDa protein precursor (1.2 protein) (GB:P17407); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.375934384940728 3.19501522245395 0.0119278123907301 1 4.16790080566465 13.4836671659449 0.375934384940728 0.139489822674896
AT1G73980_at 8.79167506898158 8.51692810234612 9.0552856497963 8.5401921172577 8.99612718751265 8.85658484782004 8.01364281637797 7.73226861358904 7.00355617634202 8.13687084770192 7.7175165830549 7.67952096842099 7.93318167646744 7.70425835237897 7.31488211512932 8.0392269380999 8.29462491510266 7.73278683640241 8.0647363161257 0.20377074696282 0.206791154060424 0.204115376813113 0.207567433835431 0.205045742179577 0.2135542565903 0.201208694914048 0.208991341395130 0.250365363809446 0.210444454903532 0.211050723689129 0.201786095686947 0.210248716419418 0.217676285136986 0.205446640763721 0.201425179027234 0.210918141572145 0.213090803638413 0.206883764128630 1 0|1 /|- 27823966 27824741 27824204.778 27823810 27827697 - gene protein_coding_gene FALSE TRUE AT1G73980.1 phosphoribulokinase/uridine kinase family protein similar to phosphoribulokinase/uridine kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26190.1); similar to putative uridine kinase [Oryza sativa (japonica cultivar-group)] (GB:AAL87159.1); similar to Os02g0708200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047881.1); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083); contains InterPro domain Uridine kinase; (InterPro:IPR000764); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172) 0.332682075840929 3.19446862677269 0.0119378919466542 1 4.16713138973564 16.3313651728878 0.332682075840929 0.114719808338161
AT1G54290_at 8.0929727204464 7.98100430514184 8.52433161223602 8.5871981839231 8.49951312231125 8.5234414397761 8.72001476757782 9.0611822952298 7.80448999120232 8.16951050723434 8.32815147045223 8.07655760306517 8.6692946389759 8.43903254113216 8.05187920163345 8.53077360981016 8.7376490994964 8.4276113758483 7.91757865597047 0.113696459374547 0.11175882207764 0.113904751539148 0.112185940173433 0.111414884192826 0.113425060683819 0.107635754192613 0.109290157604942 0.112600896173282 0.114169624029521 0.112080144575567 0.115466569327108 0.110139945978191 0.109372407278061 0.112657379665230 0.106575080976796 0.112984355351571 0.115127366605579 0.107966995420282 1 1|0 -|/ 20272673 20273027 20272800.2 20272152 20273774 - gene protein_coding_gene FALSE TRUE AT1G54290.1 eukaryotic translation initiation factor SUI1, putative Identical to Protein translation factor SUI1 homolog 2 [Arabidopsis Thaliana] (GB:Q94JV4); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT4G27130.1); similar to Protein translation factor SUI1 homolog (Translation initiation factor nps45) (GB:Q9SQF4); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874) 0.256793270939334 3.18963148028562 0.0120274804781347 1 4.16032101707715 16.684446511174 0.256793270939334 0.0632199213902661
AT3G15430_at 8.44586283954654 8.88857090251047 8.84447760428438 8.74398861654267 8.88562595358976 8.40711347034162 8.21839594872674 8.29651148386935 7.83327689583035 6.90824225212036 7.73342458249349 7.77889531511198 7.9024182466768 8.13626493477875 7.17478665645413 7.98400151318534 7.74131466467594 7.98798466347366 7.45218804074509 0.182435897888551 0.179130488158290 0.190381956921546 0.184398362715825 0.178309692444862 0.188672226941604 0.180462546933323 0.175675351498856 0.184846369855385 0.20240761031257 0.178917522682759 0.175763008299055 0.185827899458939 0.188706913761050 0.183163612999544 0.182395597099880 0.194596205433562 0.184476313444896 0.184981644366595 3 3|0 +|/ 5210581 5211516 5211027.8 5208745 5211752 + gene protein_coding_gene FALSE TRUE AT3G15430.1|AT3G15430.2 regulator of chromosome condensation (RCC1) family protein similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT3G26100.2); similar to Os12g0284000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066582.1); similar to regulator of chromosome condensation, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97468.1); similar to Os07g0459400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059575.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091) 0.332475021700336 3.18888886350099 0.0120412964859414 1 4.15927524759926 16.1927127115955 0.332475021700336 0.114943306223925
AT1G21600_at 8.50508581371587 8.4488397125895 8.03384921323233 8.17364972253634 8.44050038017184 8.28421499491254 7.84904987051119 8.04829281925353 6.55911351123044 7.35649687630159 7.28997966055283 7.54140308649969 7.55325059272972 7.59995994526233 7.5723965923829 7.28003372228363 7.52231995694347 7.49701288507407 7.13484543568479 0.189763302539859 0.183768841409772 0.182679958244360 0.184011833921067 0.180280399345473 0.198742522771893 0.182790603908811 0.186007463024474 0.202386127141419 0.188068605140528 0.195446880566928 0.174786053320061 0.178535476579498 0.183383137662066 0.187741906735794 0.18612770786399 0.17932101154676 0.179305837901039 0.185323186972671 1 0|1 /|- 7571515 7573153 7572300 7570875 7573835 - gene protein_coding_gene FALSE TRUE AT1G21600.1|AT1G21600.2 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91155.1) 0.24273123558644 3.18264755517686 0.012158069748126 1 4.15048384129975 15.4723668973429 0.24273123558644 0.0509940975565185
AT1G54390_at 7.1060440471134 6.97685941305217 7.00643991622055 7.36213228543546 7.78146348393543 7.31437852360464 7.07948929685122 7.13730909691063 6.63010120125361 6.18552319453201 6.10671872073086 6.84214624050086 6.64336929839492 6.83626129113667 6.67297944449759 6.67780464124421 6.84486478176197 6.75168892332556 6.18655621671437 0.202408774973242 0.197601930583281 0.207320971950851 0.209849116159521 0.201450289566032 0.197261583726446 0.207339308991765 0.198580431668428 0.208572851548099 0.198534980037391 0.208655734676594 0.197818842361292 0.212216319807747 0.198128099108848 0.204340642506624 0.201905234704994 0.203739140799676 0.201234119400313 0.206207867663008 1 1|0 -|/ 20308798 20310102 20309206.25 20308234 20310691 - gene protein_coding_gene FALSE TRUE AT1G54390.1|AT1G54390.2|AT1G54390.3|AT1G54390.4 PHD finger protein-related similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G24010.1); similar to PHD-finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98871.1); contains domain INHIBITOR OF GROWTH (PTHR10333); contains domain ING-RELATED (PTHR10333:SF11)|similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G24010.1); similar to Os03g0748200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051266.1); similar to PHD-finger family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98871.1); similar to putative growth inhibitory protein [Oryza sativa] (GB:AAL58962.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.314548526174792 3.18067761463794 0.0121951717955444 1 4.14770818044756 13.7235341938233 0.314548526174792 0.104510865132129
AT2G45720_at 6.37442857773387 6.68194690550205 6.42840792542925 6.5262095631486 7.64759819311139 6.98554788096092 6.43083160666402 6.38116564802576 4.6645862904 5.5728608370017 5.19043226766826 5.77632278923671 5.61931461983433 5.24359908095102 5.54022803768055 5.53136084341063 5.84651167425144 5.34266808994099 5.46536840600144 0.223202657032284 0.211980399883368 0.224089932283446 0.225493777854624 0.217443415900086 0.220991825147884 0.212453337594664 0.223695021957494 0.22878633158576 0.211980399883368 0.214559082162275 0.211980399883368 0.220122640537193 0.218704866753859 0.215547046732852 0.214928869155492 0.220115105602422 0.219506830744452 0.214275854025126 2 2 + 18842614 18843119 18842848.818 18840438 18843448 + gene protein_coding_gene FALSE TRUE AT2G45720.1|AT2G45720.2 armadillo/beta-catenin repeat family protein|binding similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G01830.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88271.1); similar to putative arm repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92297.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47908.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.353440268542572 3.18042159648143 0.0122000023365056 1 4.14734741967556 12.0548052974917 0.353440268542572 0.127745526090519
AT4G00560_at 5.93438663271832 5.07875987634296 4.2841426103996 4.16226428651361 6.25469669279627 5.40383278999405 5.8820686032799 5.40622959488631 5.17920689976147 5.10074262633975 4.46166358854694 4.73953855700078 5.16383623822465 4.63285243694052 4.64208533791632 4.32274581212638 4.64044367179809 5.04542259806857 5.4258384361787 0.242142406678629 0.251038408505738 0.247344146215165 0.243716424695001 0.24363568770838 0.252780875821339 0.240675867099562 0.247872795954874 0.240675867099562 0.241766955885937 0.242194332950505 0.241835348004927 0.240675867099562 0.243585137096058 0.253667781935305 0.246053893352986 0.248735111820356 0.243308225597084 0.246540932540900 4 0|4 /|- 241195 241868 241532.25 240675 242379 - gene protein_coding_gene FALSE TRUE AT4G00560.1|AT4G00560.2|AT4G00560.3 methionine adenosyltransferase regulatory beta subunit-related similar to Os02g0826200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048585.1); similar to C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases (ISS) [Ostreococcus tauri] (GB:CAL58455.1); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913)|similar to Os02g0826200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048585.1); similar to dTDP-4-dehydrorhamnose reductase [Metallosphaera sedula DSM 5348] (GB:ZP_01599692.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913)|similar to 3-beta hydroxysteroid dehydrogenase/isomerase [Anabaena variabilis ATCC 29413] (GB:YP_324154.1); similar to Os02g0826200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048585.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913) -0.539158102948258 -3.17778678652791 0.0122498320281131 1 4.14363426084981 10.2714657279519 -0.539158102948258 0.225459320362899
AT4G17550_at 5.07124535623716 5.30776814210075 6.74522352441129 6.87195470061123 6.92261890399043 6.20516822131985 7.45291089830563 7.99175137751533 4.91409699295715 5.59131537372689 6.27816233688884 5.36050612232661 7.07795768872085 6.14051544570737 5.15509826526744 5.60708505450965 6.12655904388045 5.56646857369961 5.43560808801505 0.201183602290515 0.204419578261512 0.210974512124182 0.206484847774725 0.205514222385704 0.212079959445131 0.209039083457435 0.221887227723956 0.213812465267849 0.207722959742264 0.209561979296643 0.201183602290515 0.204381932250867 0.21594066758222 0.218749594504632 0.202385063815479 0.208793254677195 0.209427514939422 0.210454814968407 4 4 - 9778120 9778544 9778353 9777661 9779751 - gene protein_coding_gene FALSE TRUE AT4G17550.1 transporter-related similar to glycerol-3-phosphate transporter, putative / glycerol 3-phosphate permease, putative [Arabidopsis thaliana] (TAIR:AT3G47420.1); similar to transporter, putative [Brassica oleracea] (GB:ABD65069.1); similar to transporter, putative [Brassica oleracea] (GB:ABD65148.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.415346487759444 3.17739866461194 0.0122571901449267 1 4.14308723216466 12.1849389161989 0.415346487759444 0.162070877134057
AT1G02300_at 9.96200108856634 9.64534384767173 10.3144476282279 10.0300185048304 10.6519310238053 10.2303551967584 9.70381293292825 9.35311049392604 9.545743983186 9.45073914293921 9.55298106035618 9.21619045251965 9.49301119610357 9.72784919835599 8.9772939240221 9.62393612924614 9.76125879234872 9.59811995949904 9.36693565426758 0.0935652734023364 0.0915886573825783 0.095836540792046 0.0923469362532519 0.0915886573825783 0.0965201917051655 0.094407928375255 0.0925755724006266 0.100694191339063 0.0915886573825783 0.096380338374447 0.0954643257173552 0.0926615454011495 0.100165987257357 0.093531097703461 0.0937501671627664 0.0983829568012354 0.0936729438794541 0.0915886573825783 1 1|0 +|/ 454452 454984 454665.556 453288 455463 + gene protein_coding_gene FALSE TRUE AT1G02300.1 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02305.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32839.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1, propeptide; (InterPro:IPR012599); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.339989079945608 3.17717987283009 0.0122613400897287 1 4.14277885479322 19.4605290975163 0.339989079945608 0.120131615115295
AT3G51100_at 8.85567196104146 8.7716898117215 8.9746103176281 9.10059263800942 9.13881370409676 8.88461252351654 8.96525085169238 8.64707775913925 7.60174213682454 7.46533953454783 7.74845176092732 7.93342319605998 7.88230608934234 7.75992881392021 7.72087974566348 7.75996431923766 7.9728152228781 7.90236939595326 7.45768949331524 0.197907675511697 0.198424265861438 0.204928745522333 0.200674264530456 0.203692859464336 0.198884734512710 0.201182351192697 0.201850380866101 0.231727619982624 0.21335211352191 0.204549091061219 0.200442167339947 0.197907675511697 0.209246087970266 0.207450405814985 0.197907675511697 0.206131470511084 0.202657318611213 0.203590113529180 3 3|0 -|/ 18991526 18993003 18992283 18991243 18993271 - gene protein_coding_gene FALSE TRUE AT3G51100.1|AT3G51100.2 similar to Os06g0713900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058569.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54105.1) 0.270747481507990 3.17525065253782 0.0122979962108857 1 4.1400594921629 16.5889271323025 0.270747481507990 0.0751895935232916
AT1G57790_at 5.85020489320652 5.97853409377465 5.79536433785055 6.06610243358327 7.09458981320795 6.75232310363948 5.55796536378742 5.87214293720149 6.13945871718895 5.43198975797188 5.8873199567141 5.59636903179902 5.60651253881074 5.89196979376877 5.68323514344898 5.79478131488088 5.75829623082263 5.34007184068099 5.54990231420299 0.212156347869529 0.219838948098748 0.209834035875295 0.209978892720042 0.234702742967938 0.219109541182620 0.218615185056108 0.217102742653809 0.220172459029523 0.219277743419713 0.209011438178853 0.216291696704116 0.221558848415041 0.209068891605503 0.209781922750898 0.211262618207389 0.211454512043053 0.215116040039703 0.212317368173587 1 1 - 21408251 21408816 21408555.636 21408073 21409621 - gene protein_coding_gene FALSE TRUE AT1G57790.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G56470.1); similar to F-box protein family-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08724.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.30004282582781 3.17383887408965 0.0123248931406472 1 4.13806925722174 11.8218715776083 0.30004282582781 0.0956698942220782
AT1G34780_at 7.8405402246781 7.76766042851252 7.33871224295722 7.3091377487346 7.78958775527541 7.53815826172238 8.78854361220584 8.41938275518064 6.77980479704486 6.68761379678719 6.83065768461926 6.85555569294122 7.3135565380353 6.7681211587157 6.35111198630265 7.23727813054133 7.19027380742252 6.04208746582936 6.52285240614991 0.222039172312667 0.214301459077875 0.216784353090216 0.223785658918002 0.216451601430811 0.221438754927087 0.215525022835389 0.225805758082021 0.218942461812392 0.225886814714068 0.221540194361792 0.212246021392608 0.222668458491493 0.228132312079492 0.232107026155144 0.213999440205737 0.223954366902927 0.231677398111486 0.220696872722611 1 0|1 /|- 12748865 12749490 12749171.2 12748549 12750361 - gene protein_coding_gene FALSE TRUE AT1G34780.1 ATAPRL4 (APR-LIKE 4); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. similar to ATAPRL6 (APR-LIKE 6), electron carrier/ protein disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G08930.1); similar to Os02g0754900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048159.1); similar to adenosine 5'-phosphosulfate reductase 3 [Zea mays] (GB:AAW63053.1); similar to adenosine 5'-phosphosulfate reductase 4 [Zea mays] (GB:AAW63054.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.274988055790805 -3.17280294842946 0.012344668439605 1 4.13660874642994 14.5924673660141 -0.274988055790805 0.078484181093133
AT1G04120_at 6.59912193623676 6.93262337699214 6.75845076533458 6.65912134917968 6.78483284295362 5.93770455688421 7.14834857135842 6.99002713492476 6.1426182944491 7.10955617327684 6.54391362757591 6.99332486116149 5.7898172657901 6.04680397536339 5.26621117546428 6.38534998529712 6.38772106937551 6.15786900049338 6.66153476057834 0.218217646734283 0.218745779309903 0.219669870532107 0.224082206155990 0.218785242101067 0.221617505416632 0.226231790801678 0.212250150610684 0.220084674037847 0.212250150610684 0.212250150610684 0.219387642906658 0.219817565415917 0.216288969528576 0.223910830533622 0.221024441936422 0.233768238443834 0.221616651930925 0.21564327806158 1 1|0 -|/ 1064863 1065642 1065258.25 1064453 1070926 - gene protein_coding_gene FALSE TRUE AT1G04120.1 ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) member of MRP subfamily Identical to Multidrug resistance-associated protein 5 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 5) (ATP-energized glutathione S- conjugate pump 5) (MRP5) [Arabidopsis Thaliana] (GB:Q7GB25;GB:O65619;GB:Q56ZX0); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP8 (Arabidopsis thaliana multidrug resistance-associated protein 8) [Arabidopsis thaliana] (TAIR:AT3G13090.1); similar to ATMRP9 (Arabidopsis thaliana multidrug resistance-associated protein 9) [Arabidopsis thaliana] (TAIR:AT3G60160.1); similar to multidrug resistance-associated protein [Thlaspi caerulescens] (GB:BAD11207.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59598.1); similar to putative MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAB62557.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.412014791163138 -3.1695619208684 0.0124067521320796 1 4.13203864551420 13.1434185398163 -0.412014791163138 0.160836743324319
AT1G05380_at 7.01893097734928 7.3223397918106 7.48604410692971 7.33641974508068 7.7024397057061 7.77564754548785 7.3010232059433 7.4941762623409 6.99723273099582 6.67962575025371 6.95651939015293 7.21701920133171 7.2999279642448 7.22728947230556 6.96965434865996 7.3180941230328 7.45955261937179 6.93396958963977 7.14447280511502 0.175305858981524 0.17046371800783 0.167245861231788 0.16905933196134 0.165271726571283 0.171875032557574 0.16616342105408 0.164701545058394 0.167877490369535 0.172710673793804 0.164438011541899 0.163047053948574 0.170196638568834 0.170234466191949 0.1660375351399 0.162712966867444 0.181317978156983 0.162712966867444 0.174711199428105 1 1 + 1581667 1582164 1581916.182 1576862 1582613 + gene protein_coding_gene FALSE TRUE AT1G05380.1 DNA binding similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G14920.1); similar to PHD finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83629.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.261664896455481 3.1687221107879 0.0124228922473037 1 4.13085427438194 14.4862262179380 0.261664896455481 0.0685942604870364
AT4G09830_at 9.71400594502748 9.766124805587 9.61145510040432 9.86602339913058 10.3856589802339 10.3770797851687 9.16026674315505 9.29186460915773 9.48175765809349 9.20468113879661 9.37693179539633 9.36524891750665 9.55371301868935 9.15064056532565 8.9203571641115 9.35682989939201 9.363794909196 9.1506694510558 9.43787663884964 0.120331093098919 0.129166638833671 0.132515994469119 0.125515610686763 0.125941423872881 0.131625839888328 0.123067841491338 0.122456889531013 0.133894548322456 0.129362161037465 0.125675966894471 0.128076950302337 0.124605324088003 0.130209224980081 0.138300091360550 0.130835233178169 0.136961674176331 0.136664839561329 0.129272053780670 4 4 + 6188882 6190543 6189884.455 6188764 6190850 + gene protein_coding_gene FALSE TRUE AT4G09830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64780.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81201.1); contains InterPro domain Tetraspanin; (InterPro:IPR008952) 0.240995096836728 3.16733891990199 0.0124495232423849 1 4.12890342634747 19.0988324344818 0.240995096836728 0.050427842569043
AT3G46560_at 9.31083482597015 9.08848301859955 9.10619097081766 9.16044904053334 9.13689720329294 8.58681778168019 9.61402022113084 9.46383955615186 8.75343290553756 8.92138130740144 8.67182314824263 9.05589048908458 8.51728673493782 8.69792838667157 9.01129868600074 8.29100949894004 8.58317083117574 8.46259530680287 9.09078993797706 0.132937091051156 0.130253062511462 0.138750968885839 0.13335000329352 0.132194599098703 0.138806729464116 0.131300375346118 0.130840329897550 0.145304300801802 0.135739815539046 0.132847436584740 0.135010909769330 0.137878557094806 0.134017134587816 0.136869566563473 0.134189146371222 0.137623560095212 0.130452300591133 0.131009873009516 3 3|0 +|/ 17149627 17150253 17150032.1 17149572 17150497 + gene protein_coding_gene FALSE TRUE AT3G46560.1 TIM9 (EMBRYO DEFECTIVE 2474); protein translocase Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Identical to Mitochondrial import inner membrane translocase subunit Tim9 (TIM9) [Arabidopsis Thaliana] (GB:Q9XGX9;GB:Q8L927;GB:Q9SNC2); similar to small zinc finger-like protein [Oryza sativa] (GB:AAD40019.1); similar to Os12g0571200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067084.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) -0.316099160727714 -3.16691690179961 0.0124576603381875 1 4.12830817490409 17.9750632950407 -0.316099160727714 0.106330208275994
AT4G20170_at 5.24538867522199 6.25593970636678 5.6813896704866 6.14561816531285 5.67522399205081 5.68621971352399 7.7966474711818 8.83970487404092 6.55459699862118 6.85996812464399 7.26826279487709 7.1363026919542 6.88820239371544 7.60803056183905 5.96615425221901 7.71204642293759 6.13871767499228 6.9249636048115 7.42846764525441 0.290601958867449 0.289754769582593 0.293600705584155 0.299343584757677 0.2908988309941 0.312477897826153 0.289754769582593 0.309891065718031 0.293217812846657 0.289754769582593 0.291514410279057 0.289754769582593 0.298396639780394 0.315090081659216 0.296087871088574 0.291669758684181 0.289754769582593 0.301347137759547 0.294650574687806 4 4 + 10898513 10898767 10898656.375 10896689 10899151 + gene protein_coding_gene FALSE TRUE AT4G20170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44670.1); similar to Os06g0328800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057533.1); similar to Os02g0712500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047907.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72474.1); contains InterPro domain Protein of unknown function DUF23; (InterPro:IPR008166) -0.614824918098782 -3.16503423822979 0.0124940283528537 1 4.12565248201327 13.3672728531106 -0.614824918098782 0.263862180109214
AT4G39540_at 8.09046136172293 8.08342204911636 7.81143967190993 7.85897978481175 8.27020823766965 7.88705586590364 8.80571529326931 8.52242620904937 8.25472083513543 8.50569322781065 8.24460470971489 8.19828588856124 7.98208470937935 8.34423010887304 8.39036281188777 8.3914973422735 8.05586552896808 8.27874699016555 8.37255526397377 0.124440545297674 0.117781317437839 0.126276333989099 0.120668487053070 0.121816825810348 0.123171707339894 0.117844065853565 0.120519026610200 0.129165794168960 0.120907482975388 0.120801561756822 0.122027697028322 0.125252281619705 0.120809321832184 0.119163332137091 0.120396241003971 0.121653550984117 0.124740461206134 0.123140981956676 4 4|0 +|/ 18379327 18380062 18379657 18378227 18380411 + gene protein_coding_gene FALSE TRUE AT4G39540.1|AT4G39540.2 shikimate kinase family protein similar to ATP binding / shikimate kinase [Arabidopsis thaliana] (TAIR:AT2G21940.5); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) -0.280266009647221 -3.16335354392284 0.0125265884328349 1 4.12328138655808 16.4728966609489 -0.280266009647221 0.0828800068258047
AT4G36960_at 6.69345016718974 6.50634596549089 6.18840476211166 5.98700932841438 6.54631427119131 6.3988645135914 6.60882402165657 6.53314631204265 6.35808021323404 6.39112491602693 6.46128147120581 6.2160659906195 6.08986067312931 6.42551834239784 6.35651396783284 6.61055927909127 6.38206396801503 5.92736787252719 6.7368139966316 0.205480019176523 0.199423822384671 0.197587144039353 0.211089531740881 0.197706995098208 0.216063398714460 0.203354191950337 0.203914415182385 0.194937145995906 0.191084854076949 0.191084854076949 0.193267964707661 0.191227848317536 0.195517819452263 0.196652888123519 0.191084854076949 0.200264545744777 0.200656176133554 0.194611170967317 4 4 + 17428639 17429555 17429134.273 17426927 17429757 + gene protein_coding_gene FALSE TRUE AT4G36960.1 RNA recognition motif (RRM)-containing protein similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT3G07810.2); similar to RNA-binding re (GB:ABE93568.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.245989580398143 -3.16313700311351 0.0125307899085856 1 4.12297587377294 12.8347917448277 -0.245989580398143 0.0555493744385125
AT1G26910_at 5.26946132012467 5.50792791546623 5.12199298160646 5.26360822981318 4.89148261252064 4.84404664313069 5.3872936147254 5.70878827095228 5.11120968740615 5.1321174119846 4.95284812645839 5.90613205020298 4.92247051980858 5.05827188784722 5.89955897289115 4.74370734676182 4.50726425316726 4.72401624363318 5.31840616039442 0.220449128385220 0.20824508987964 0.216407840350719 0.207847248809640 0.205921748189477 0.205921748189477 0.216110433390924 0.217973443155243 0.207228225836768 0.213346525796965 0.223381671782485 0.211534204101406 0.209630746042952 0.210513538695287 0.213697172377169 0.213509134754802 0.225628291331882 0.216942707272462 0.219616588263903 1 1 + 9322121 9322772 9322433.545 9321637 9322952 + gene protein_coding_gene FALSE TRUE AT1G26910.1 60S ribosomal protein L10 (RPL10B) Identical to 60S ribosomal protein L10-2 (Wilms tumor suppressor protein homolog) (RPL10B) [Arabidopsis Thaliana] (GB:Q08770;GB:Q42327;GB:Q9ZVG7); similar to 60S ribosomal protein L10 (RPL10A) / Wilm's tumor suppressor protein-related [Arabidopsis thaliana] (TAIR:AT1G14320.1); similar to 60S ribosomal protein L10 (QM protein homolog) (GB:Q9SPB3); similar to Ribosomal protein L10E [Medicago truncatula] (GB:ABE79479.1); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197) -0.268022954190733 -3.16273540868246 0.0125385858151231 1 4.12240926034917 10.3875892460548 -0.268022954190733 0.0739350975081257
AT3G62360_at 8.36436356949644 8.47015892209644 8.0310950150065 8.0366872247594 7.88339289386466 7.19933721536934 7.94328082910079 7.62570865937058 7.8275600712829 7.12966271750216 6.92572583013074 7.58133643856798 7.1104381380248 7.26140029062559 7.51980388075346 6.97045740851874 6.76993513137111 6.90996843855027 7.64734548685457 0.180077963379121 0.180630637763237 0.196340641028312 0.182838787950433 0.180227916268465 0.198475085585194 0.182010453937057 0.183391679297794 0.201219261641367 0.183651770581479 0.187830163749231 0.184470394121507 0.181063709707928 0.188525853534458 0.184641639298818 0.187654941167522 0.189732955956824 0.190563681362738 0.186690299044482 3 3|0 -|/ 23084073 23084789 23084410 23083761 23091518 - gene protein_coding_gene FALSE TRUE AT3G62360.1 similar to LOC495699 protein [Xenopus laevis] (GB:AAH86296.1); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969); contains InterPro domain Cna B-type; (InterPro:IPR008454); contains InterPro domain Borrelia outer surface lipoprotein; (InterPro:IPR001809) -0.358486402539067 -3.16237552962067 0.0125455762248899 1 4.12190148979958 15.2772476843569 -0.358486402539067 0.131795435246245
AT4G36480_at 5.73592871380418 5.61922172147665 5.70077994119071 5.30103685387866 6.02445947867173 6.02460083750289 5.90189354918643 4.91296662292633 5.1455358366201 4.08828124252044 5.17118967782678 5.5136316345832 5.15215032727124 5.61363133164059 5.23680293355902 5.05534408451489 4.77554588617887 4.85910809617282 4.19444277617218 0.209694748559972 0.194532404020309 0.202404653620469 0.213554086237049 0.207748029061172 0.201298914064055 0.200886174406599 0.193436835726420 0.204584445105465 0.205646149186306 0.193436835726420 0.193436835726420 0.193436835726420 0.197331371754077 0.198223165104722 0.193436835726420 0.202900643585433 0.199377683675479 0.198338849060646 4 4|0 +|/ 17220195 17221101 17220609.222 17218135 17221480 + gene protein_coding_gene FALSE TRUE AT4G36480.1|AT4G36480.2 ATLCB1 (ARABIDOPSIS THALIANA SPHINGOLIPID LONGCHAIN BASE 1); serine C-palmitoyltransferase Encodes the LCB1 subunit of serine palmitoyltransferase. Together with the LCB2 subunit, forms a functional serine palmitoyltransferase complex, which catalyzes the first reaction of sphingolipid biosynthesis. Knockout of LCB1 was embryo lethal. Partial suppression of LCB1 expression led to smaller plants due to reduced cell expansion. similar to LCB2 (Serine palmitoyltransferase LCB2 (long chain base) subunit gene), serine C-palmitoyltransferase [Arabidopsis thaliana] (TAIR:AT5G23670.2); similar to serine C-palmitoyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G48780.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95571.1); similar to putative serine palmitoyltransferase LCB1 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD19391.1); similar to aminotransferase, classes I and II family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95004.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.458152751996725 3.16158235720915 0.0125609974244696 1 4.12078231915597 10.4767420222827 0.458152751996725 0.185692697734035
AT1G15120_at 10.4287050471206 10.5395966614326 10.5787546022057 10.6526900929570 10.1895931474670 9.99492036175097 9.87743065058935 10.1496469088731 10.1151463847631 9.67447340685915 10.1825315494343 10.4452996989402 9.97664381688726 10.3369051482426 10.2959932342368 10.3554050751766 9.89477093091416 9.93752698019463 9.53926671363281 0.0838208181047849 0.0861679473194758 0.0920263143422305 0.0851221025901508 0.0811255439677138 0.0869690600049278 0.0811255439677138 0.0870230154687729 0.0875294974576033 0.0845307324288387 0.0811255439677138 0.0811255439677138 0.084008214839868 0.0837383873716475 0.0821941795234303 0.0845403624253057 0.0914569860873169 0.0860832394725435 0.0852203181339452 1 1|0 +|/ 5203495 5203860 5203682.778 5202849 5204188 + gene protein_coding_gene FALSE TRUE AT1G15120.1 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative similar to ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative [Arabidopsis thaliana] (TAIR:AT2G01090.1); similar to Os11g0162200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065827.1); similar to ubiquinol--cytochrome-c reductase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95093.1); contains InterPro domain Ubiquinol-cytochrome C reductase hinge protein; (InterPro:IPR003422) 0.253491893296426 3.16150132836132 0.0125625739349315 1 4.12066798345824 20.2786322120520 0.253491893296426 0.0623387462368011
AT1G15830_at 4.90459763396472 4.51933269932818 4.77797285998651 4.44258455187547 4.10334834468606 4.54951970906202 4.43382130437001 4.49537039277654 5.45896886159711 5.48222356271624 4.73987563909092 4.74157867777006 4.68569229405063 5.36245737903184 4.89683228404590 4.93570638109603 5.16115329422055 5.21093080276306 5.60568222990964 0.214490940284785 0.203184176945757 0.208909415949246 0.211121512730149 0.202847758651906 0.205178980376275 0.20095994625855 0.204299991221991 0.209997217606518 0.214666868851802 0.209084095571008 0.201738172955475 0.20095994625855 0.2056625947882 0.20457039440421 0.204874701452896 0.20095994625855 0.204543568191293 0.217498064104356 1 1 + 5449628 5450134 5449912.545 5448721 5450172 + gene protein_coding_gene FALSE TRUE AT1G15830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv] (GB:YP_177981.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) -0.334385340969861 -3.1606793686221 0.0125785777874028 1 4.11950812062057 9.769520051381 -0.334385340969861 0.117851568269499
AT1G27900_at 5.34973979160094 5.09838163237776 6.18697227919603 5.75041154478328 5.62963887331065 5.92638019850406 5.50469097316072 5.33806840628135 4.23001911423451 4.51866438529907 4.51176633995346 4.55352358954402 4.69117010203744 4.17791870753829 4.63169458905071 4.67645960239397 5.03313686910118 5.04846842132297 5.01777824349839 0.225377414873032 0.220552611923983 0.22916909135109 0.224745004510033 0.220552611923983 0.230681989341811 0.22070362481631 0.223510969870953 0.225530490304853 0.233508523256718 0.226626660872139 0.223356644889270 0.229046146535405 0.221025775388506 0.224026386606783 0.220552611923983 0.226304298028427 0.230304269980661 0.230344149183648 1 1 - 9715619 9716574 9716028.455 9715440 9720555 - gene protein_coding_gene FALSE TRUE AT1G27900.1 RNA helicase, putative similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to Helicase associated domain family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92900.2); similar to Os11g0310800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067756.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.313663609850206 3.16053210126671 0.0125814473814236 1 4.11930030533249 10.2252043917161 0.313663609850206 0.105205948427579
AT2G40420_at 7.6377044678147 7.94557016796507 7.70704748030932 7.96733317802071 8.87394081289558 8.58659617672357 8.28090925063093 8.4288829333575 7.39349758667742 7.21070860975841 7.39800099427122 7.10837185281621 8.1903341550238 7.65200899088892 7.23772331286329 7.51124127977378 7.75812718613942 7.7629711754204 7.02399965193313 0.210143556901675 0.211281887540731 0.211884585808728 0.219959202268962 0.207346544152041 0.228889377332751 0.211308597345983 0.206658593417924 0.221746474923782 0.220398872656367 0.209183633819984 0.218744937486272 0.206312619071396 0.21171932033084 0.220855378480762 0.207694760407265 0.214268711807196 0.210420908407431 0.212899148776297 2 2|0 +|/ 16885424 16885795 16885584.111 16884301 16886292 + gene protein_coding_gene FALSE TRUE AT2G40420.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G56200.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE86055.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.289204062994278 3.15807465760149 0.0126294330550611 1 4.11583218146244 15.5718727173926 0.289204062994278 0.0894197217874427
AT1G09390_at 5.89253810360441 5.8432384821719 5.3507075752512 5.49734472601239 6.31631045334544 6.4923504782855 6.26136946995228 6.36859967976751 7.31493751821218 7.12217636856772 7.56155392089698 7.68624461409363 7.57624488493206 7.97749558716103 8.12766914528521 7.59308400855914 7.48603898334099 7.4798320336834 6.68172090006086 0.205827142033340 0.206846317548989 0.214518571329004 0.223818132152973 0.207931220769760 0.209438262258006 0.207887054108482 0.214195624674630 0.213897706607285 0.204651112111215 0.201670735972458 0.200749605913628 0.201693268969225 0.205445463362392 0.212169470762122 0.205964482091758 0.206182929376589 0.206346326989146 0.203168212000466 1 1 + 3032468 3033361 3033008.455 3031205 3033584 + gene protein_coding_gene FALSE TRUE AT1G09390.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56670.1); similar to Os01g0329900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042924.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85172.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.234575337990039 3.15568178341343 0.0126763413355853 1 4.11245460457674 13.3656233674776 0.234575337990039 0.0446002242657327
AT1G51710_at 9.32013227544791 9.1022494379683 9.58986336370715 9.3702244324086 9.25539592697569 9.37246364694253 9.09824177777683 9.01824205289275 8.32873756514202 8.28289320326588 8.5256482334249 8.56539638407433 8.40603130759004 8.4394381107508 8.30404431178355 8.68354677735921 8.93507634461091 8.31105141791786 8.24527623450794 0.164340072966956 0.160758017799239 0.160758017799239 0.170426308721755 0.163942203110284 0.16428622146173 0.162249584480965 0.171609456190894 0.184016739190422 0.165049895448327 0.167116411023172 0.16950051741915 0.165809722249134 0.164340196316286 0.169319812241973 0.165432696709224 0.163599990326875 0.163079791201704 0.169011785047169 1 1|0 -|/ 19179480 19180829 19180193.6 19179310 19183635 - gene protein_coding_gene FALSE TRUE AT1G51710.1|AT1G51710.2 UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6); ubiquitin-specific protease|UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6) Ubiquitin-specific protease 6 (UBP6). Deubiquinating enzyme. Interacts with calmodulin. similar to UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT3G21280.1); similar to ubiquitin specific protease 14 [Danio rerio] (GB:NP_956267.1); similar to Os01g0550100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043299.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394)|similar to UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT3G21280.1); similar to hypothetical protein LOC505106 [Bos taurus] (GB:NP_001068657.1); similar to Os01g0550100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043299.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.248956949893688 3.15410830206293 0.0127072857802521 1 4.11023330267834 17.6693090035537 0.248956949893688 0.0588942926098546
AT1G22885_at 7.09594698992202 7.16481579259239 6.95633157935777 7.14444435849922 7.51477577409312 7.03025097054875 6.77753009564908 7.0526177760543 7.47106219841283 6.92075868623304 8.24754637820318 8.35391472737644 7.4297975472055 7.78748274447233 7.91094634786034 7.37245623581672 6.91886967058333 7.73399753080031 7.33160210763602 0.172062808615707 0.170212187205042 0.171209905410079 0.175848399473902 0.165803557495594 0.172637458315039 0.176263030067357 0.175040144378402 0.171588353585762 0.169704346410959 0.171872207797755 0.174754241882710 0.171702647778586 0.175161300995954 0.175840295421832 0.171788605202725 0.179597399334510 0.170341370152988 0.171308795953623 1 1|0 +|/ 8101609 8102097 8101877.111 8101554 8102364 + gene protein_coding_gene FALSE TRUE AT1G22885.1|AT1G22885.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22890.1) 0.308479203716371 3.15199660023965 0.0127489388296086 1 4.10725180326272 14.5723478646981 0.308479203716371 0.102463392070542
AT1G25540_at 6.68280413430626 6.24487837103819 6.97604314107952 6.67646366379354 7.01467962401396 6.87572810019447 5.82030663015885 5.63605881193732 5.90738200128495 5.89735838050007 5.58983108060503 5.55598385529679 5.80691243457634 5.5127351428579 5.27492473847734 5.89862291243487 6.48867966091815 5.99902503418683 6.033055904403 0.227206232175335 0.227206232175335 0.242162260643044 0.230862419921131 0.237971912206088 0.239590428026063 0.245857710983328 0.231561463519062 0.242183491653664 0.228826997340769 0.231680276758607 0.233421492228792 0.235458876919496 0.240503214255083 0.233835496018102 0.227206232175335 0.233146826482746 0.233920670494455 0.231904262615606 1 1 - 8969381 8970024 8969642.818 8969052 8974647 - gene protein_coding_gene FALSE TRUE AT1G25540.1|AT1G25540.2 PFT1 (PHYTOCHROME AND FLOWERING TIME 1) Encodes a nuclear protein that acts in a phyB pathway (but downstream of phyB) and induces flowering in response to suboptimal light conditions. Mutants are hypo-responsive to far-red and hyper-responsive to red light and flower late under long day conditions. similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to putative phloem transcription factor M1 [Apium graveolens] (GB:AAF65166.2); similar to Os09g0306700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062824.1); contains domain SEX-DETERMINING REGION Y PROTEIN, SRY (PTHR10270:SF35); contains domain vWA-like (SSF53300); contains domain no description (G3D.3.40.50.410); contains domain SOX TRANSCRIPTION FACTORS (PTHR10270)|similar to LUG (LEUNIG) [Arabidopsis thaliana] (TAIR:AT4G32551.1); similar to putative phloem transcription factor M1 [Apium graveolens] (GB:AAF65166.2); similar to Os09g0306700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062824.1); contains domain SEX-DETERMINING REGION Y PROTEIN, SRY (PTHR10270:SF35); contains domain SOX TRANSCRIPTION FACTORS (PTHR10270) 0.304811953716683 3.15178646341053 0.0127530915325271 1 4.10695508818575 12.3467560359728 0.304811953716683 0.100129976092459
AT1G50575_at 5.92094152697847 6.35070675039728 5.03524258552084 5.51840891500787 5.47742907246718 5.61827047788566 7.24920112033274 7.11656758686122 5.851732166645 6.14054692463042 6.82367978817671 7.17563288550481 5.94911051644701 6.31782800833236 6.85248550139722 6.15532643493449 6.35285017119982 6.36375742493372 5.75299828120744 0.189343920488866 0.186746819787508 0.191998222713323 0.185702592994125 0.187529804218375 0.186954148060611 0.192812105463461 0.190703555651326 0.200642214362236 0.187249038336297 0.188794059407655 0.183940748497337 0.186808535449120 0.188172730761385 0.185703509412436 0.183940748497337 0.195684772681025 0.190536179942726 0.189542001707782 1 1|0 -|/ 18732530 18733121 18732798.3 18732387 18734055 - gene protein_coding_gene FALSE TRUE AT1G50575.1 lysine decarboxylase family protein similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76324.1); contains InterPro domain Conserved hypothetical protein 730; (InterPro:IPR005269) -0.331637549775278 -3.15120449570287 0.0127645996829974 1 4.10613332183324 12.2428091538614 -0.331637549775278 0.116805591648015
AT1G61570_at 7.93514309724098 8.18807678003134 7.53574832906268 7.9365025337001 7.24664123062957 6.45142149127229 7.57444232019833 8.02622706703943 6.18400467063956 6.14813643087282 5.92513268226071 6.37871931004663 5.79879579931085 5.98029680190422 6.41652863874436 5.85531752694658 5.89814380043015 5.70905584667457 6.39249543664868 0.224854828866030 0.225856153203583 0.217886434357905 0.215395107036737 0.222798296412709 0.227665476381871 0.220945576997297 0.223190147280917 0.235585446881556 0.214913736578209 0.216797004305124 0.223605533508635 0.221981132607160 0.216400346845792 0.217801911274428 0.214913736578209 0.240962357615942 0.222167651752352 0.214913736578209 1 1 - 22722562 22723096 22722817.545 22722370 22723181 - gene protein_coding_gene FALSE TRUE AT1G61570.1 TIM13 (TIM13); protein translocase Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space. Identical to Mitochondrial import inner membrane translocase subunit Tim13 (TIM13) [Arabidopsis Thaliana] (GB:Q9XH48;GB:Q94KC4;GB:Q9SY93); similar to TIM8 (Arabidopsis thaliana translocase inner membrane subunit 8), protein translocase [Arabidopsis thaliana] (TAIR:AT5G50810.1); similar to Os04g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053653.1); similar to small zinc finger-like protein [Oryza sativa] (GB:AAD39987.1); similar to Os02g0682600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047752.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) -0.442345315945978 -3.15067241869163 0.0127751307420970 1 4.10538197429374 13.7301725129019 -0.442345315945978 0.178260019188024
AT4G28220_at 5.99764089139047 5.17225393007985 4.1888553127168 3.92850275514178 4.31057834871962 4.46249666418901 4.65912041635726 4.65159521575112 4.29019553815928 4.6844389515808 4.78292221809826 5.36136624902674 4.42802740293022 4.7887797618813 5.35976776933574 4.68476863453401 4.4117585861622 4.38749411613788 5.0190985799481 0.197691608855049 0.203565228304907 0.194385888331264 0.193413325729482 0.190612316377703 0.195277519608967 0.190612316377703 0.195795727711422 0.20082945634235 0.191543293366563 0.191139871183164 0.192191237217529 0.190612316377703 0.193685285179206 0.201596380125935 0.190612316377703 0.195701489820754 0.201096456149497 0.196884848445256 4 4 + 13994852 13995633 13995244.727 13993003 13995837 + gene protein_coding_gene FALSE TRUE AT4G28220.1 NDB1 (NAD(P)H DEHYDROGENASE B1); NADH dehydrogenase/ disulfide oxidoreductase similar to NDB4 (NAD(P)H DEHYDROGENASE B4), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G20800.1); similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G21490.1); similar to NDB2 (NAD(P)H DEHYDROGENASE B2), disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05020.1); similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand [Medicago truncatula] (GB:ABD32606.1); similar to external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum] (GB:CAB52797.1); similar to Os06g0684000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058394.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.393255720417818 -3.14944544389955 0.0127994500106148 1 4.10364925314617 9.39147458287291 -0.393255720417818 0.15206994752965
AT2G26240_at 9.64590450016122 9.84292656205639 9.5735876628324 9.83436007970323 9.81385599093469 9.79078488944652 8.30248428004329 8.68444544719487 9.74625906128367 8.5705381303947 9.11778240037995 9.19391557532574 8.8563907183229 9.17195605172162 8.90541899960481 8.84479080851647 8.63575211519916 8.93577221839734 8.74951745980264 0.110012851817264 0.109479701534392 0.112307659872088 0.105261648137006 0.111530837287685 0.114925917894366 0.110043025363128 0.114133508488192 0.116494649591927 0.107010253563192 0.116200025156231 0.105226016279785 0.110558339698539 0.109470263382122 0.111376767127795 0.109435328657986 0.117785666652429 0.105226016279785 0.112197461277454 2 2|0 -|/ 11174592 11175425 11174873 11174335 11175551 - gene protein_coding_gene FALSE TRUE AT2G26240.1 Identical to UPF0136 membrane protein At2g26240 [Arabidopsis Thaliana] (GB:O64847); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43520.1); similar to PREDICTED: similar to MGC82997 protein [Gallus gallus] (GB:XP_419915.2); similar to Os04g0653100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054104.1); similar to Os03g0584300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050565.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.284912217735882 3.14822610760186 0.0128236656983374 1 4.10192717219664 18.4259572989268 0.284912217735882 0.0870873511569976
AT1G12000_at 5.99967080950368 5.96706453673978 5.08176862736574 5.44490541309877 4.82920404324771 5.06251574651894 6.29768765015489 6.1345822916623 5.93114657418381 5.99593495160035 6.80714300917942 6.85234977909651 5.74064685983068 6.19499504097934 6.96237182257977 5.78764596464248 5.92535659454806 6.70991409768102 5.85506646579494 0.188000930496560 0.182536195257570 0.185872238801993 0.181502645627831 0.180912297873681 0.191705407774125 0.184876598117321 0.180963640861709 0.183193869714884 0.185911318034445 0.181162545438848 0.186284817262293 0.183547617056425 0.182176101608645 0.192727083353221 0.180416324370371 0.191629247502165 0.185878458451843 0.184352395523427 1 1|0 -|/ 4050165 4051317 4050772.1 4049894 4053833 - gene protein_coding_gene FALSE TRUE AT1G12000.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative similar to MEE51 (maternal effect embryo arrest 51), diphosphate-fructose-6-phosphate 1-phosphotransferase [Arabidopsis thaliana] (TAIR:AT4G04040.1); similar to pyrophosphate-dependent phosphofructokinase beta subunit [Citrus x paradisi] (GB:AAC67586.1); similar to Pyrophosphate-dependent phosphofructokinase PfpB [Medicago truncatula] (GB:ABD32662.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit beta (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41141); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) -0.274991316124954 -3.1481717148528 0.0128247470357271 1 4.1018503493629 11.7521426697499 -0.274991316124954 0.0800495587840888
AT2G25650_at 4.91889175324135 5.32183338488744 5.50164233758973 5.08646059663002 5.25951913856731 5.6499731090007 4.64896475475382 4.56674449620303 4.30479372704476 4.53953555757495 4.81452450148911 4.32786081073928 4.58267442779605 4.90620780664732 4.47472610461739 5.08188418714182 4.39435667493329 4.62456440563672 4.60301394755561 0.228758184016029 0.240226777090332 0.234027270696086 0.240328366535465 0.241815382587662 0.250210292817587 0.228758184016029 0.230404585866855 0.242824058662557 0.230821986111971 0.235754426224641 0.228758184016029 0.230355119215450 0.232254983823857 0.236830745678725 0.234257104945650 0.247322740350715 0.238996605910520 0.232606652640245 2 2 + 10922485 10922891 10922674.818 10921664 10923294 + gene protein_coding_gene FALSE TRUE AT2G25650.1 DNA-binding storekeeper protein-related similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT4G00270.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.339346159496109 3.14761612667539 0.012835797671845 1 4.10106563514473 9.68590250082595 0.339346159496109 0.121625830445927
AT1G07830_at 5.65304267453851 5.5474489458712 4.91504092143343 5.16805754668213 5.11794398725745 5.11108308228451 5.57484897722044 5.27517558113897 3.56750231929771 4.25509411911355 3.83567750980268 4.11296807289676 4.06061712010689 3.84155005486665 4.74499375317726 4.29180312116067 4.22502337165383 3.55665217158042 4.69633855148632 0.218970489244327 0.216489354174672 0.212246856414948 0.212246856414948 0.219817803791786 0.213532595212803 0.214261067527797 0.220036411475383 0.227547233502323 0.214701768175042 0.220704549184706 0.213711437551137 0.212869531227347 0.214514009109005 0.218149600180597 0.212503722782708 0.213074900538238 0.217891583051918 0.212246856414948 1 1|0 +|/ 2422548 2423296 2422947.2 2422238 2423650 + gene protein_coding_gene FALSE TRUE AT1G07830.1 ribosomal protein L29 family protein similar to Mitochondrial/chloroplast ribosomal protein L4/L29 (ISS) [Ostreococcus tauri] (GB:CAL53798.1); similar to Os06g0128500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056673.1); contains InterPro domain Ribosomal protein L47, mitochondrial; (InterPro:IPR010729); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.261957671669057 -3.14635809960261 0.0128608565014520 1 4.09928868240341 9.42364970298908 -0.261957671669057 0.0702991124663321
AT4G29190_at 11.1276867028554 11.2823460728541 10.0659042313922 10.2137479067970 11.4314946333738 11.1325327164396 9.4550809550258 9.3907055112819 9.16055562067272 9.45929845002775 9.29809218248747 9.95952835145699 9.8958692143291 9.47737338168734 9.39737726194448 8.77288224563812 9.71011126259005 9.0651918311764 9.38264597526702 0.130590331291732 0.12999540835227 0.132666729760105 0.128321687228410 0.135825724723837 0.132023444718077 0.128778365489480 0.132057388646219 0.134158714414902 0.133698972562597 0.132423280020516 0.128321687228410 0.128321687228410 0.129199794618979 0.138572401062591 0.139493216989486 0.129701761892195 0.143732224387115 0.140125307968916 4 4 - 14392247 14392769 14392559.636 14391944 14393379 - gene protein_coding_gene FALSE TRUE AT4G29190.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G19810.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.254925797960469 3.14627549525423 0.0128625036930073 1 4.09917199902132 19.9030472904539 0.254925797960469 0.0645889755760113
AT3G21270_at 5.93696940567523 6.24156084675277 6.30259579182091 6.3810076574868 7.23393884782686 7.14830679836203 5.9884354239509 6.19973281867497 5.35600919175451 6.41423240606963 5.6602090709177 6.37105347346071 6.80300401271703 6.00798565153408 5.58372968093445 6.49552415163511 5.97647627177523 4.79179781933161 6.58922825250538 0.220314480924979 0.220731231265479 0.221161646489554 0.218927953736829 0.230044099384703 0.226432687544065 0.218784859818839 0.227666448422739 0.247719550579006 0.217407735315694 0.217407735315694 0.217407735315694 0.217407735315694 0.230698902941385 0.223853173403586 0.221231999185963 0.229496764842429 0.225754020500500 0.217407735315694 3 3 + 7475033 7475508 7475341.545 7474685 7475763 + gene protein_coding_gene FALSE TRUE AT3G21270.1 ADOF2 (Arabidopsis dof zinc finger protein 2); DNA binding / transcription factor Encodes Dof zinc finger protein adof2. Identical to Dof zinc finger protein DOF3.1 (AtDOF3.1) (DOF3.1) [Arabidopsis Thaliana] (GB:Q94AR6;GB:O82156); similar to ADOF1 (Arabidopsis dof zinc finger protein 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G51700.1); similar to Dof1 [Glycine max] (GB:ABI16003.1); contains InterPro domain Zinc finger, Dof-type; (InterPro:IPR003851) 0.258093441602875 3.14596311855181 0.0128687347030745 1 4.09873074295995 12.4695913488095 0.258093441602875 0.0672254009577204
AT3G56160_at 4.43655811124665 3.84247235470991 4.09779531623222 3.07521289748291 4.01026786129625 3.29252317364602 6.77052662058103 6.15084058033878 5.06248263297381 6.07514809130207 5.47235528137944 6.32297561550794 5.71480661788453 6.42882850192697 6.18401854256491 6.85716896973817 5.74359774281438 5.8436128976632 5.67926451080239 0.264328979893078 0.263287689623312 0.270707631044169 0.282972469059865 0.256653649534911 0.266627151782972 0.261789122343228 0.257155132955997 0.270744243627702 0.252248050052522 0.253657462980116 0.257084807640073 0.269018425358652 0.255434339849274 0.252248050052522 0.258524248555672 0.264055678943201 0.253965795088791 0.252248050052522 3 0|3 /|- 20848892 20851335 20849873.25 20848423 20852520 - gene protein_coding_gene FALSE TRUE AT3G56160.1 bile acid:sodium symporter similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT2G26900.1); similar to Os02g0531200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047023.1); similar to Cysteine proteinase Cathepsin F (ISS) [Ostreococcus tauri] (GB:CAL52442.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) -0.607930414197943 -3.14565183523376 0.0128749470333021 1 4.09829102188064 10.2978007475472 -0.607930414197943 0.262323752912307
AT1G11350_at 7.93422916929417 8.11989623079708 6.39277572602974 6.71319669581559 7.7541580115617 7.77562743094208 6.24963697169792 6.25818720391752 8.6964440248054 7.70907216062503 8.03340954007065 8.19205950660239 7.65323308739289 7.77280722363034 7.54529637006434 8.05000434433546 7.10022343773067 7.5248724481833 8.37788497878154 0.196401663261553 0.191970173453187 0.196684564072128 0.190756549309415 0.195886973574898 0.191459783805222 0.201581894344409 0.20093099752033 0.214325143693794 0.190756549309415 0.195518377270394 0.190756549309415 0.190756549309415 0.192980931973205 0.199884501009066 0.190948139489671 0.199336682972332 0.206173177802241 0.192838076425797 1 1|0 -|/ 3817743 3818415 3817913.4 3817591 3820805 - gene protein_coding_gene FALSE TRUE AT1G11350.1 S-locus lectin protein kinase family protein similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT1G11300.1); similar to B120, protein kinase/ sugar binding [Arabidopsis thaliana] (TAIR:AT4G21390.1); similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11330.1); similar to Protein kinase; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABD32350.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to Protein kinase; EGF-like, subtype 2; S-locus glycoprotein; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE85536.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.254346702246065 -3.14467989208711 0.0128943643822028 1 4.09691798688898 15.1472744130846 -0.254346702246065 0.0642114189351498
AT2G03680_at 10.3166183341713 10.2332980794406 10.4381947448858 10.4715963424702 10.3450199915951 9.93582752840173 9.82069356872952 9.99993534938825 10.1468931311087 10.0518194018936 10.3297490150749 10.5936115070714 10.3867947769775 10.4875639423607 10.3767272274405 10.2368573045354 10.1414733358204 10.2320520464166 9.82273121205483 0.104929454492277 0.100879495251935 0.107042282376154 0.101036733218636 0.101289959205079 0.105444159883961 0.106226961022607 0.105031297007907 0.106403878676839 0.101687609082138 0.100607189590101 0.0995898988456303 0.101595787076691 0.0977041879522215 0.106113983726187 0.0977041879522215 0.102493643370264 0.0987024769497618 0.104309312936512 2 2 + 1121502 1121821 1121632.636 1120797 1122052 + gene protein_coding_gene FALSE TRUE AT2G03680.1 SPR1 (SPIRAL1) The SPR1 gene encodes a plant-specific 12-kD protein which has a repeated motif at both ends, separated by a predicted rod-like domain, suggesting that it may act as an intermolecular linker. Ubiquitously expressed and belongs to a six-member gene family in Arabidopsis; expressed in transgenic seedlings localized to microtubules within the cortical array, preprophase band, phragmoplast, and mitotic spindle. similar to SP1L2 [Arabidopsis thaliana] (TAIR:AT1G69230.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44613.1) 0.272989524174460 3.14395499557413 0.0129088661376353 1 4.09589388714823 20.3727737721259 0.272989524174460 0.0788537052529224
AT1G19715_at 8.48156029596926 8.21103295756775 8.77819948414982 8.57324681895258 8.8843572886581 8.42400761756662 9.69112089792006 9.3161644988363 8.8982193819204 9.4323598013118 8.87570717376741 8.8687293135335 9.09644454234181 8.75356118009353 8.272586304653 9.29269103531133 9.17341398589734 8.71035123904806 9.5308466914967 0.112705577915544 0.114296145890116 0.113378901496354 0.116622409780213 0.112187011964221 0.118609079142984 0.114337175572872 0.118091383500129 0.11837025875069 0.119484994837481 0.116540292748426 0.120598700722446 0.115484074007766 0.118053117394609 0.123895344602141 0.113935982614000 0.120970080495881 0.117235565940593 0.122147828594235 1 1|0 -|/ 6816930 6817795 6817179.8 6816693 6819533 - gene protein_coding_gene FALSE TRUE AT1G19715.1 jacalin lectin family protein similar to jacalin lectin family protein [Arabidopsis thaliana] (TAIR:AT1G73040.1); similar to Agglutinin (CCA) (GB:P82859); similar to Os01g0775500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044410.1); similar to Os05g0508400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055995.1); contains InterPro domain Jacalin-related lectin; (InterPro:IPR001229) -0.333361610826890 -3.14313624795622 0.0129252658557283 1 4.09473713726204 17.8787500099894 -0.333361610826890 0.118350255925852
AT4G37020_at 5.5524366372089 5.4069913745361 4.62107665244879 4.8185682655974 5.55279266818493 5.43254445564663 5.5435786779843 5.41081266210891 4.36796767742995 4.82031102890291 4.03030764388563 4.72619529918072 5.01804907048188 4.31871930519266 3.7988953529589 4.82312915738834 5.27313066759498 4.44926647120908 4.80567372527358 0.205873471091613 0.209927386784901 0.211418139254058 0.210137439224156 0.205805899779613 0.212402663158622 0.209571633779554 0.215573388761598 0.216668438115062 0.207793822091009 0.205805899779613 0.205805899779613 0.207502460124211 0.210649601449633 0.214205527960502 0.206861488705388 0.220901606795905 0.215498857920068 0.206099816354691 4 4|0 +|/ 17445906 17446981 17446339.6 17445691 17447394 + gene protein_coding_gene FALSE TRUE AT4G37020.1 similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G19760.1); similar to Centrin [Oryza sativa (japonica cultivar-group)] (GB:AAK13107.1); similar to Os10g0388900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064497.1); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.241074258519533 -3.14015146773855 0.0129852358525709 1 4.09051960186645 9.9020313899755 -0.241074258519533 0.052559555922626
AT3G06410_at 7.15859882773846 7.60212422086426 6.74075238042382 7.28309892442134 7.30113530951436 7.16315177631165 8.13959222226856 8.24631272333838 8.34744798951628 8.38703301724526 8.50471912399833 8.75007271380946 8.27556523442414 8.35961950317067 8.34119069896183 8.52751472110064 7.77426250994538 8.17513640769655 8.35155148761911 0.202716891824877 0.192922061481096 0.200601069783462 0.198461235151419 0.197786158926440 0.216588842886173 0.185369695179997 0.185466326423832 0.199821696563752 0.189993364243751 0.189609989885754 0.1855915237508 0.18820979860654 0.193394929757 0.186190021867023 0.185369695179997 0.208731664206507 0.190246634327874 0.191669062113706 3 3 - 1947500 1948122 1947811.455 1947246 1949795 - gene protein_coding_gene FALSE TRUE AT3G06410.1 nucleic acid binding Identical to Zinc finger CCCH domain-containing protein ZFN-like 2 [Arabidopsis Thaliana] (GB:Q9SQU4); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G18550.1); similar to putative floral homeotic protein HUA1 [Oryza sativa (japonica cultivar-group)] (GB:BAD81402.1); similar to Os01g0258700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042637.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.344061559103233 -3.13914990317834 0.0130054241368113 1 4.0891041833215 15.8046062709094 -0.344061559103233 0.124945379655505
AT1G28150_at 8.88239604544794 9.00127649119466 8.62212186012231 8.69136828131002 9.6393117954515 9.07658258415948 8.76784866685212 8.66990880060899 8.3629237253922 8.2904843631356 8.78092644869894 8.8081235824331 8.66124437664898 8.82155361606081 8.66096284737923 8.81319322459204 8.64880476379756 8.65625615778966 8.23687928792525 0.126430727910471 0.121177654708652 0.117306247090239 0.124695648649974 0.122287829235403 0.121303121661926 0.125594261220481 0.116827667128144 0.125189617245375 0.119688537665287 0.121555910877693 0.117117764387893 0.116758455920702 0.121051995369555 0.121554612647553 0.117238771868690 0.13156883143477 0.126298797717439 0.118403971125684 1 1|0 -|/ 9835126 9835799 9835389.8 9834930 9835891 - gene protein_coding_gene FALSE TRUE AT1G28150.1 similar to Os04g0528100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053373.1) 0.305804648796131 3.1372666570299 0.0130434728751285 1 4.08644250240531 17.4329246086397 0.305804648796131 0.101673703395870
AT2G04039_at 10.5494292323021 10.4284179310279 10.5976588048787 10.6003650232436 10.8217803140187 10.3344823155733 11.9710203304484 11.5389690957629 11.2486269431654 11.4779476641916 11.3540553384970 11.1929416212128 11.0996357644587 11.2911451898135 10.9674927326026 11.4542838203530 11.2754297643318 11.2471361948326 11.3385222856348 0.0748666979875088 0.0747092612604148 0.0762209131939483 0.0767825654781571 0.0748740092274605 0.0797798321614831 0.0787436358957281 0.0749778152063735 0.0839987283240877 0.0782691938322725 0.0786245416792327 0.0751890585713565 0.078631325046682 0.0775782274836562 0.0784418929696797 0.0752796952607695 0.0769681379578571 0.0773825846515521 0.0747092612604148 2 2|0 +|/ 1333480 1334382 1333976.667 1333259 1334563 + gene protein_coding_gene FALSE TRUE AT2G04039.1|AT2G04039.2|AT2G04039.3 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84849.1) -0.326577388678986 -3.13723703371931 0.0130440723045354 1 4.08640063163555 22.1504140563703 -0.326577388678986 0.114632050337124
AT1G62422_at 5.9355330252183 5.50832551129825 6.42429882299222 6.31982114339752 6.24782765549281 6.14974816640795 5.04112405239506 5.31315523826202 4.90708675645925 4.58071658486884 4.27076716915854 4.06977762427982 4.43932883503367 4.67113139383282 4.33952555442362 4.67304440065714 4.85205180838125 4.12983051207144 4.57363149771825 0.27135577298994 0.277904059997598 0.273584153035127 0.277072685477981 0.277875242935966 0.27135577298994 0.278373400290812 0.273675960071343 0.288523874754881 0.282509280837783 0.276448076901688 0.272906027940517 0.279232248042379 0.276515078461743 0.286767676600692 0.276766104014955 0.276650881707216 0.292722789393239 0.27135577298994 1 1 - 23104183 23104587 23104408.111 23103804 23104698 - gene protein_coding_gene FALSE TRUE AT1G62422.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12020.1); similar to Os11g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067925.1); similar to OSJNBa0043A12.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE02815.1); similar to hypothetical protein LOC_Os11g29810 [Oryza sativa (japonica cultivar-group)] (GB:ABA93811.2) 0.289713353080112 3.13694342414105 0.0130500150638053 1 4.0859856275479 10.4263927562223 0.289713353080112 0.0910870058836505
AT1G14570_at 8.99546109633795 9.00515813113062 8.9083126722939 9.06275929773891 9.3360750645579 9.09803908690973 8.77069706544062 8.75415501420118 8.27022294927597 8.74879028996035 8.98962618129528 8.88105067122788 8.92262053430927 8.80218109648548 8.7317777748041 9.02012948198743 8.35734227341492 8.78002933067388 8.64834141530175 0.112309879922759 0.113729198011028 0.113806921906594 0.112555519810561 0.113774983414772 0.107334071793011 0.107343056190314 0.120049169017451 0.134570257301849 0.111557546747589 0.112455712715292 0.108101362826758 0.113984317851205 0.112739384110027 0.108316777635936 0.109470978978010 0.120221717715019 0.112036388310418 0.110240401408603 1 1 + 4986437 4987158 4986766.818 4983530 4987370 + gene protein_coding_gene FALSE TRUE AT1G14570.1|AT1G14570.2|AT1G14570.3|AT1G14570.4 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14250.1); similar to Os04g0670800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054216.1); similar to OSJNBa0043A12.36 [Oryza sativa (japonica cultivar-group)] (GB:CAE02831.2); similar to UAS; UBA-like; Thioredoxin-like fold [Medicago truncatula] (GB:ABE87214.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UAS; (InterPro:IPR006577); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903)|similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14250.1); similar to Os04g0670800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054216.1); similar to OSJNBa0043A12.36 [Oryza sativa (japonica cultivar-group)] (GB:CAE02831.2); similar to UAS; UBA-like; Thioredoxin-like fold [Medicago truncatula] (GB:ABE87214.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UAS; (InterPro:IPR006577); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.237369243388135 3.13528938653753 0.0130835461098983 1 4.08364756330523 17.6745219550117 0.237369243388135 0.0492165025983291
AT2G47590_at 8.47595699533468 8.45125925951637 8.2213824594071 8.0269672595854 8.49873309101043 8.1649035336691 9.13228030053035 9.00306840969619 8.92187353570326 9.03618945340613 8.6074764316206 8.99265754798226 8.71362749998896 8.83024881081034 9.08865191856105 9.10856243861312 8.8354158458284 8.90554170443847 8.65349306678298 0.113341859540352 0.111463915202309 0.119324622750945 0.112585714595506 0.108649728067344 0.111024117089947 0.112480910588132 0.109895113818340 0.109913063101647 0.111216309087102 0.106299255097837 0.114351820962012 0.107211219835951 0.108278529309717 0.110515225743671 0.106299255097837 0.114850995930398 0.107080097173777 0.111731880664879 2 2|0 +|/ 19529793 19530747 19530189.2 19528867 19531133 + gene protein_coding_gene FALSE TRUE AT2G47590.1 PHR2 (PHOTOLYASE/BLUE-LIGHT RECEPTOR 2) photolyase/blue light photoreceptor PHR2 (PHR2) mRNA, Identical to Blue light photoreceptor PHR2 (PHR2) [Arabidopsis Thaliana] (GB:Q8LB72;GB:O22253); similar to CRY3 (CRYPTOCHROME 3), DNA binding / DNA photolyase/ FMN binding [Arabidopsis thaliana] (TAIR:AT5G24850.1); similar to Deoxyribodipyrimidine photolyase, class 1 [Medicago truncatula] (GB:ABE84974.1); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050) -0.261445282959225 -3.13528417567636 0.0130836518874597 1 4.08364019707709 17.3747146436076 -0.261445282959225 0.070623507412047
AT4G16980_at 10.5846332674279 11.0403085116868 10.3089341181241 10.5537582719579 10.1547528031304 10.4452412505672 11.2476909183663 11.8536339767815 12.4484813704921 12.0253625218529 12.6734518362685 12.4295144628316 12.5307039707212 12.3401964039311 12.345723291964 11.9064500402911 11.2058558673107 12.4306365321904 12.0671539539361 0.127294405816547 0.112928703333531 0.125457299305083 0.119595756660936 0.118209536247143 0.126266521988414 0.119726954897317 0.114137390831961 0.118171466763444 0.112763125831066 0.112507568247532 0.112202223510709 0.115918821813381 0.117988653264354 0.116028209252178 0.111856235150505 0.116325205765426 0.114798553162714 0.111908441329910 4 4 + 9557133 9557568 9557341 9556997 9557831 + gene protein_coding_gene FALSE TRUE AT4G16980.1 arabinogalactan-protein family similar to AGP19/ATAGP19 (ARABINOGALACTAN-PROTEIN 19) [Arabidopsis thaliana] (TAIR:AT1G68725.1); similar to hypothetical protein [Capsella rubella] (GB:CAC82613.1); contains InterPro domain Glutelin; (InterPro:IPR000480) -0.381705561179581 -3.13393649760765 0.0131110389350636 1 4.08173499146964 22.9801937228130 -0.381705561179581 0.146752938736430
AT1G67560_at 8.1475273579672 8.42964522390354 7.16524245160544 7.47920059199173 7.76737496323946 7.30804683985002 7.10065718019783 7.65213470546006 7.51900470071583 7.50599057063974 7.34466085878506 7.61515228704741 7.37662146797172 7.26645279097674 6.45328650642829 7.52193683999933 7.17306018840191 7.44757391420645 7.85235034287984 0.224273915845508 0.227353652662475 0.237377820748552 0.225430755887527 0.218148540930138 0.23858561179623 0.234650530159627 0.222406721847048 0.233361898292741 0.226621608017702 0.217364486311234 0.227152990201362 0.230611735225856 0.231888323114288 0.242353608111770 0.217364486311234 0.231877565366512 0.217364486311234 0.228650600563398 1 1 + 25327240 25327756 25327515.273 25323562 25327927 + gene protein_coding_gene FALSE TRUE AT1G67560.1 lipoxygenase family protein similar to LOX3 (Lipoxygenase 3), iron ion binding / lipoxygenase [Arabidopsis thaliana] (TAIR:AT1G17420.1); similar to lipoxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G72520.1); similar to LOX2 (LIPOXYGENASE 2) [Arabidopsis thaliana] (TAIR:AT3G45140.1); similar to lipoxygenase [Zantedeschia aethiopica] (GB:AAG18376.1); similar to lipoxygenase [Nicotiana attenuata] (GB:AAP83138.1); similar to lipoxygenase [Sesbania rostrata] (GB:CAC43237.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Plant lipoxygenase; (InterPro:IPR001246); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976); contains InterPro domain Lipoxygenase; (InterPro:IPR000907) -0.376731834947592 -3.13228208019467 0.0131447411219716 1 4.07939591103545 15.0815411533464 -0.376731834947592 0.144090221347786
AT1G54740_at 3.80968288249612 3.80803772208132 3.92689979568929 3.98989194540757 5.89922839883482 5.08359249118068 4.38405515347321 4.20447665986343 4.88181691921772 4.8699453530895 6.29361985251937 5.38461314991601 5.76800115306539 6.02084064632973 4.65871095563018 4.4450741717676 3.79287105900528 5.18895796055753 5.58112971788739 0.235738430043166 0.225617230254502 0.231065987173696 0.225995747338316 0.216664080530575 0.232244419966240 0.220295531554914 0.215547204796812 0.240727567839776 0.220111222103582 0.215547204796812 0.219814343717944 0.224639266499088 0.232247709079877 0.223165923485434 0.215547204796812 0.241275160453581 0.220512093188102 0.224832601609225 1 1 + 20434815 20435376 20435071.818 20434436 20435653 + gene protein_coding_gene FALSE TRUE AT1G54740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22110.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28434.1) 0.378231087583462 3.1320950001522 0.0131485578112113 1 4.07913139335998 9.54075818879352 0.378231087583462 0.144941012580153
ATCG00040_at 11.0189669579234 11.6280518364317 11.0638447264126 11.1517626710675 10.8463507269888 10.4260627567860 11.3192540453767 11.4061637991195 12.3261890189186 12.4219156683126 12.2035328383398 12.7450887786923 11.999616023672 11.9405896753737 12.0246722360077 12.1246769859251 11.3878163898186 12.0670739605892 12.1333503960439 0.136000981826672 0.132936433475195 0.139893036197981 0.139715269246563 0.135903015244204 0.137635182120219 0.131419397369800 0.135003675478989 0.139812484376533 0.135737570815808 0.133797336210639 0.134529659777554 0.144868443729643 0.141198904839303 0.150024691894176 0.13101529075217 0.134098396058351 0.142601980160601 0.139853115532843 C C - 2151 2625 2384.455 2056 3636 - gene protein_coding_gene FALSE TRUE ATCG00040.1 Encodes a maturase located in the trnK intron in the chloroplast genome. Identical to Maturase K (Intron maturase) (matK) [Arabidopsis Thaliana] (GB:P56784;GB:Q9G1K9;GB:Q9G227;GB:Q9GF24;GB:Q9GF25); similar to maturase K [Brassica rapa] (GB:AAS48152.1); similar to maturase K [Brassica hilarionis] (GB:AAS48145.1); similar to maturase K [Brassica rupestris] (GB:AAS48153.1); contains InterPro domain Agglutinin; (InterPro:IPR008998); contains InterPro domain Maturase-related, N-terminal; (InterPro:IPR002866); contains InterPro domain Intron maturase, type II; (InterPro:IPR000442) -0.351644469719243 -3.13187946961718 0.0131529563607899 1 4.07882664457726 23.2852830510853 -0.351644469719243 0.129838202902425
AT3G16740_at 4.80528093440106 5.13464280297471 4.73174170315388 5.26389267787287 6.2204554598586 5.08038637732862 4.62121377276482 4.43307949842025 4.51225566325768 4.07418856163965 4.93531210401349 4.6251200854698 4.77381551314784 5.01835016129756 4.50479639795067 4.51544953444125 4.64370820912628 4.54747290506792 4.01610657075775 0.216161829919403 0.21402942150176 0.216739588611824 0.220069421758682 0.224972803604931 0.227728349280894 0.220221528266695 0.219224952576162 0.220470611716926 0.217391734697990 0.221484581000079 0.226927124583554 0.220414950401008 0.218395169349444 0.219629124835797 0.21402942150176 0.219675621426720 0.221328272742536 0.215017735339701 3 3 + 5700058 5700605 5700259.364 5699339 5700832 + gene protein_coding_gene FALSE TRUE AT3G16740.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G18780.1); similar to Cyclin-like F-box; F-box protein interaction domain; Galactose oxidase, central [Medicago truncatula] (GB:ABE85493.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.535108825504636 3.1311425470389 0.0131680070694464 1 4.07778464134231 9.4845133428632 0.535108825504636 0.227408309491035
AT1G01090_at 10.2541331858199 10.4819726886810 9.92287335877455 10.0442438933316 10.3300132885750 10.1333036243386 11.0401687953410 10.9812960016848 11.0015653103029 11.0301904073565 11.2080864970700 11.1385110168746 10.9053844138590 11.1721604581894 11.0882733805748 10.9990405002772 10.6321624665769 11.0311043475751 10.7592831322066 0.0738084484396699 0.0717451187394756 0.0742317193695555 0.0765582317031267 0.0727780452632651 0.075073570673226 0.0738324936009205 0.0720660599810604 0.077105300974313 0.0745492621370168 0.0717451187394756 0.0717451187394756 0.0743315496134913 0.0717734442834657 0.0722435118820445 0.0717451187394756 0.0815892159211138 0.0746023531475505 0.0755472885751551 1 1 - 47708 48354 48057.818 47485 49286 - gene protein_coding_gene FALSE TRUE AT1G01090.1 PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA); pyruvate dehydrogenase (acetyl-transferring) pyruvate dehydrogenase E1 alpha subunit similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G59900.1); similar to H0716A07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH65949.1); similar to Os04g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052065.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) -0.245145012395398 -3.13106233883349 0.0131696463026149 1 4.07767122437365 21.3745939387750 -0.245145012395398 0.0570824274016007
AT3G11450_at 7.95501230479713 8.27696855000767 7.4212069452616 7.9084034701391 8.18882551314194 8.07916861390331 7.7474532432963 8.06401985802573 7.52950618848737 7.90970466940463 7.28973194795794 7.557987086639 7.01427750818162 7.19076676780636 7.32298589451038 7.28326151372722 7.36115135610428 7.3415663142855 8.08470216397324 0.203260495752233 0.203752872846853 0.204744024542940 0.200256847157245 0.203588793960358 0.205318829729833 0.203102820258886 0.202443143456361 0.234594190645797 0.193195874552915 0.200339352128033 0.195697461379310 0.215875284372565 0.206610496059961 0.200952933789362 0.192927221183502 0.207747300435816 0.214176203367593 0.198708207928028 3 3 - 3605530 3606040 3605730.909 3605226 3607483 - gene protein_coding_gene FALSE TRUE AT3G11450.1 DNAJ heat shock N-terminal domain-containing protein / cell division protein-related similar to DNAJ heat shock N-terminal domain-containing protein / cell division protein-related [Arabidopsis thaliana] (TAIR:AT5G06110.1); similar to gonidia forming protein GlsA [Lilium lon (GB:BAC77346.1); similar to DnaJ domain, putative [Medicago truncatula] (GB:ABE90980.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.328775322695213 -3.12868557775837 0.0132183173089312 1 4.07431012865932 15.5233925069582 -0.328775322695213 0.116507737919647
AT1G23390_at 11.9365278831438 12.1003765512586 11.8023829778050 11.867946405633 12.0523643336536 11.9790763991041 11.9928808468970 12.0109120344327 11.8221231992561 12.1627346816893 11.6556038881397 11.4541821061591 11.9275728777349 11.8125101051689 11.1108191811204 11.8645385775889 12.0414769626753 11.5971096396897 12.1504245515415 0.0820477459503913 0.0820477459503913 0.0820477459503913 0.0820477459503913 0.084189907446681 0.0847347127725043 0.0844461399156234 0.0842931456214748 0.0914739544588302 0.0839237760232913 0.0847200990342136 0.0820477459503913 0.0820477459503913 0.0855034259119461 0.086069318942052 0.0831635136312587 0.0846272969484575 0.0874421959056054 0.0856007238791295 1 1 - 8309515 8309998 8309753.727 8309101 8310638 - gene protein_coding_gene FALSE TRUE AT1G23390.1 kelch repeat-containing F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G24760.1); similar to Os09g0292900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062790.1); similar to kelch repeat-containing F-box-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19847.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.223424638380915 -3.12743389975935 0.0132440242939931 1 4.07253985173996 23.8318438347144 -0.223424638380915 0.0332162161208146
AT1G10390_at 7.99002116751828 7.90388988549069 8.03712510874859 7.98970001492158 8.48209045147489 8.2434091028107 7.59763630251909 7.16124943495542 7.60709898951638 7.55366643949837 7.63797898587828 7.84228246174432 7.5820588419976 7.40868182378281 7.45920443769254 8.31557368230833 7.75069982042008 7.35386810395858 7.71653933372796 0.189374822646816 0.189335723562572 0.191487334080405 0.192016922613423 0.192070134086784 0.194733117379235 0.188723728538210 0.193991154377831 0.20092876824701 0.195547507598697 0.18956613565807 0.198904831892811 0.198683006195507 0.195620570813657 0.193698214964279 0.188723728538210 0.198634856175715 0.203409963750244 0.195427351519960 1 1 - 3407506 3407827 3407684.636 3407025 3412844 - gene protein_coding_gene FALSE TRUE AT1G10390.1|AT1G10390.2 nucleoporin family protein|transporter similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to Os12g0166000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066246.1); similar to Nucleoporin autopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95896.1); similar to Nucleoporin autopeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95894.2); contains InterPro domain Peptidase S59, nucleoporin; (InterPro:IPR007230) 0.283953618671659 3.12724023905643 0.0132480063505355 1 4.07226593961607 15.5729210705401 0.283953618671659 0.0877423021460247
AT3G07560_at 9.49504859648903 9.6224848347045 10.0322633086232 10.0110632281389 10.0258428538282 10.2204172803444 8.89339158240733 9.36715409086765 9.85923536625014 9.78810125748755 10.0366349170510 9.69145995132637 9.9246246213841 9.73663435912224 9.52499431613088 9.85423308358547 9.35140375408857 9.83236266961565 10.0329556287428 0.100207693651398 0.09946255209457 0.104451199207648 0.100310278706825 0.101782582126654 0.104155158045419 0.103049322113748 0.100423096967743 0.117896399813143 0.102178974735499 0.100515555493459 0.097902269958643 0.0986255115810537 0.105027232310824 0.101239541168272 0.100753580410666 0.104609284012597 0.107504260430884 0.097148742574118 3 3|0 -|/ 2411663 2412327 2411981.2 2411327 2413481 - gene protein_coding_gene FALSE TRUE AT3G07560.1 APM2/PEX13 (ABERRANT PEROXISOME MORPHOLOGY 2); protein binding Encodes peroxin 13 (PEX13) involved in protein transport into peroxisomes. similar to GR-RBP5 (glycine-rich RNA-binding protein 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G74230.1); similar to AT3g07560/F21O3_27 [Medicago truncatula] (GB:ABE91475.1) 0.289244799913873 3.12675795739539 0.0132579284598081 1 4.07158378882517 19.5271953268578 0.289244799913873 0.091408181121305
AT2G33440_at 6.63501210709892 6.20791796485309 6.01605041716775 5.60183347727715 6.67631149140595 6.37752925192798 6.31309859150477 5.91611461087066 5.2768332649406 4.92990568453729 4.60602387661797 4.349411578825 4.58030411145468 4.90977101785549 4.31095241131824 4.95507463737044 4.5368234805347 4.3271542663644 5.35829776022714 0.212796623739385 0.217079530795113 0.209380401866593 0.211842702779165 0.209380401866593 0.225589807231756 0.211255612348538 0.227223248619153 0.225435920726683 0.210608153097225 0.209380401866593 0.215072557028414 0.221229854246161 0.211703395982065 0.212781398809031 0.209380401866593 0.226125149633999 0.213109054865892 0.209380401866593 2 2|0 +|/ 14178817 14180204 14179410.222 14177716 14180513 + gene protein_coding_gene FALSE TRUE AT2G33440.1 splicing factor family protein similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93875.1); similar to Os01g0956600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045441.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.358255403248105 -3.12440459633707 0.0133064559373299 1 4.06825482086695 11.0981259852354 -0.358255403248105 0.134142727083772
AT1G50250_at 10.9499329593947 10.9659295407118 11.0347772136452 11.2106576552986 10.9719912053575 10.880640122917 11.7965111240449 11.7973968989927 11.6652803754117 11.5702390481944 11.5684715120831 11.3790904898669 11.2828599876356 11.5060529397043 11.2244321597861 11.7899525427028 11.4176995781423 11.5884366310854 11.4587184012370 0.0874441637779089 0.0864800085315161 0.0917231910636894 0.0873142391839314 0.085869989244809 0.0918588677169093 0.0866947321949975 0.0872333473320338 0.0909708480621422 0.0891940955994865 0.0901278393678001 0.0866138892672277 0.0879841013209906 0.0877027966984822 0.0895087539240947 0.0880584655753532 0.0985868930809323 0.0859101101470436 0.0857047433863193 1 1 - 18618084 18618814 18618480 18617877 18620731 - gene protein_coding_gene FALSE TRUE AT1G50250.1 FTSH1 (FtsH protease 1); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FTSH protease that is localized to the chloroplast. Involved in the D1 repair cycle of Photosystem II. FtsH1 and FtsH5 are interchangeable in thylakoid membranes. Identical to Cell division protease ftsH homolog 1, chloroplast precursor (EC 3.4.24.-) (FTSH1) [Arabidopsis Thaliana] (GB:Q39102;GB:Q9SX43); similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to Cell division protease ftsH homolog, chloroplast precursor (GB:Q9BAE0); similar to Cell division protease ftsH homolog, chloroplast precursor (GB:Q39444); similar to Cell division protease ftsH homolog, chloroplast precursor (DS9) (GB:O82150); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.224023771485004 -3.12408103671635 0.0133131423496532 1 4.06779708557394 22.7181648009154 -0.224023771485004 0.0344094407069230
AT1G55480_at 10.0476986801821 10.1563690316066 9.99027288011276 9.96585679745724 9.81591948892732 9.63141586709976 11.2496925901311 11.0955382868281 10.5554050402868 10.9516869231758 11.3092769461168 11.3393812636395 10.8610943073981 11.0293718580564 11.1179223509719 11.3709615251392 10.8968277321630 10.8461507801054 10.8213654649202 0.112679875396744 0.111628788752744 0.116661406551202 0.114657801797765 0.108858788688845 0.121734739572687 0.111410670174832 0.108579212129295 0.128811725266601 0.113620431136759 0.110148866458460 0.111821174694618 0.110024671161574 0.115198391125342 0.120434117216061 0.113296968213897 0.115885954524992 0.113786464276723 0.107705127624400 1 1|0 +|/ 20718002 20718979 20718642.889 20717350 20719213 + gene protein_coding_gene FALSE TRUE AT1G55480.1 binding / protein binding similar to rubredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G17170.2); similar to PDZ/DHR/GLGF; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE87465.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.233118759733250 -3.1208623091789 0.0133798487320903 1 4.06324305664863 21.1803583635813 -0.233118759733250 0.0458547596627199
AT1G71810_at 6.7246797519815 6.62228870712828 6.87913749464371 6.3188858543099 7.23472027764364 6.21402529501937 8.44577193814122 8.06813340488704 7.18972114408535 7.692350120987 7.03532231495261 7.39121465159642 7.68115868196432 7.78496927158487 7.03256358989259 7.97837323837726 7.11421863198069 7.07079670496526 7.8892680198326 0.193277814042842 0.190465187753441 0.20519938328527 0.200106622707668 0.195984144775014 0.207237446516847 0.210375197045448 0.202302014082739 0.195718554627264 0.191901001142697 0.198903971823287 0.197563078744723 0.194003765256619 0.190465187753441 0.195404780051065 0.195841869903658 0.208813056142924 0.207508146098930 0.196882699298599 1 1|0 -|/ 27006282 27007613 27006720.111 27006076 27011838 - gene protein_coding_gene FALSE TRUE AT1G71810.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G79600.1); similar to OSJNBb0003B01.25 [Oryza sativa (japonica cultivar-group)] (GB:CAE03633.1); similar to hypothetical protein all4960 [Nostoc sp. PCC 7120] (GB:NP_489000.1); similar to Os04g0640500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054036.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.503947756383875 -3.11953878120953 0.0134073790315338 1 4.06137017410046 14.5517171224523 -0.503947756383875 0.212568259643552
AT1G74670_at 12.0272546999584 12.1894054305979 11.6087684550114 11.6336397695793 12.3135004493139 12.2996163150521 11.4828446228097 11.5279936277135 13.2560728707434 12.3141724788379 13.3945069156449 13.4340033621352 13.4899108885472 13.3164089302514 13.4340444910783 13.4741613231432 12.5503507036494 12.9440041961418 13.3421893714980 0.0791155968074638 0.0762039895894091 0.07846240612289 0.0805638610370424 0.0736782480714702 0.0845987731820206 0.0782558851501806 0.0812924090871455 0.0824239586675508 0.0768424322228241 0.073714320416765 0.0734459397415797 0.0754062847249419 0.078651729811909 0.0768340567759457 0.0734459397415797 0.0784972977793897 0.083249036969963 0.0749639801932157 1 0|1 /|+ 28057268 28057520 28057429.444 28056947 28057810 + gene protein_coding_gene FALSE TRUE AT1G74670.1 gibberellin-responsive protein, putative similar to GASA4 (GAST1 PROTEIN HOMOLOG 4) [Arabidopsis thaliana] (TAIR:AT5G15230.1); similar to Gip1-like protein [Populus tomentosa] (GB:AAV84588.1); contains InterPro domain Gibberellin regulated protein; (InterPro:IPR003854) 0.220434464800056 3.11931426981891 0.0134120548725552 1 4.06105245875986 24.9981206337630 0.220434464800056 0.0295425364665717
AT3G21610_at 6.46955369035518 6.92843465558532 6.95891362815014 7.03376468699002 7.81853251929247 7.37586371739915 6.41137844957515 6.69185466769594 6.44818250767164 5.98414316455712 6.26348880925174 5.85868652133578 6.47572402974123 6.49098111819433 6.04754774931728 6.24991942192866 6.14350424055977 6.53084048165889 6.3411800709608 0.211570630132136 0.202096552775163 0.219689117127259 0.210016283049398 0.209709479232411 0.207660386863837 0.202050010032080 0.208600919619547 0.218082905789316 0.19916551916906 0.203003293455821 0.214242186860665 0.20161158872942 0.213088088772552 0.202299076090991 0.19916551916906 0.218179891706976 0.219914668095578 0.200046411164070 3 3|0 -|/ 7609373 7610574 7610078.778 7609150 7610724 - gene protein_coding_gene FALSE TRUE AT3G21610.1|AT3G21610.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) 0.335607285461827 3.11897987310201 0.0134190224152649 1 4.06057923135823 13.2187478989946 0.335607285461827 0.121236741985116
AT4G38360_at 8.66689264582947 8.50824812440305 9.00447173267716 8.69850927020414 9.08524108351163 8.74563231366715 8.64137490016599 8.15438731952025 7.0807123693208 7.116815443134 7.0903969635802 6.88671939407521 7.56592300672966 7.2864019970902 6.96534981542186 7.255708246101 7.47052990725748 7.61145897049741 6.7861507653832 0.203810122875357 0.204848294970603 0.210748732911582 0.213434411411413 0.203781839338465 0.209676699857651 0.204769053445136 0.211798099897208 0.210135289382887 0.205586517213008 0.208209327627941 0.207352585234303 0.203781839338465 0.218287635779305 0.209934799621463 0.203781839338465 0.216846581513001 0.211085419708226 0.209127408722966 4 4 + 17968231 17969137 17968669 17967101 17969952 + gene protein_coding_gene FALSE TRUE AT4G38360.1|AT4G38360.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77220.1); similar to Protein of unknown function [Medicago truncatula] (GB:ABE78441.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77220.1); similar to MAP kinase activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61807.1); similar to Protein of unknown function [Medicago truncatula] (GB:ABE78441.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.331369682091733 3.11731322353264 0.0134538052350102 1 4.05822048606391 15.8186549555174 0.331369682091733 0.118800751524567
AT2G32760_at 5.91429189665925 5.627312944815 5.73001169053367 5.69449551298369 5.99554615426572 5.84840237662061 5.89045870217277 5.55018295304579 4.57193146655151 4.53347909676559 4.82542625448714 5.17296706148922 5.07995307556304 5.62933597464105 5.2524973950398 5.34977473561203 4.66077941927116 5.02148583582341 4.83685900769278 0.226442658061988 0.219322310702444 0.235734642061498 0.226001151667551 0.221080813125543 0.25114139260914 0.224413476843596 0.225287452026303 0.234424266049678 0.221266016325379 0.219322310702444 0.225152120580737 0.219322310702444 0.224369550647910 0.225304830945864 0.219322310702444 0.230385588527764 0.228793692045462 0.226055042273304 2 2|0 +|/ 13900630 13901449 13901075.556 13898868 13901801 + gene protein_coding_gene FALSE TRUE AT2G32760.1|AT2G32760.2 similar to At2g32760/F24L7.10 [Medicago truncatula] (GB:ABE83602.1); contains domain FAMILY NOT NAMED (PTHR15157); contains domain SUBFAMILY NOT NAMED (PTHR15157:SF2) 0.274078294040977 3.1171374397318 0.0134574792950769 1 4.05797169077286 10.6670631085508 0.274078294040977 0.0813646264469231
AT3G06650_at 9.50020777383713 9.65918665868418 9.2080234028223 9.08137399832088 9.57133887121688 9.3711516128398 9.94504817227538 10.1240542452854 9.97351659600426 10.1150943500815 10.4947475111256 10.4183907155041 10.3216085306055 10.1762559944698 10.1561903451504 10.1077943430947 9.43696755109234 9.87012298880025 10.2529741480816 0.137617974255863 0.128877609210065 0.143298137959962 0.139712773322347 0.131335809535825 0.140916736071536 0.132046595012106 0.128783558876591 0.144757272502210 0.129050961550566 0.128783558876591 0.130066139430275 0.128783558876591 0.136578455158085 0.138145928767159 0.130348638463317 0.148686408044463 0.133420615207809 0.129458091226859 3 0|3 /|- 2079271 2080049 2079599.571 2079039 2083297 - gene protein_coding_gene FALSE TRUE AT3G06650.1 ACLB-1 (ATP-citrate lyase B-1) One of the two genes encoding subunit B of the trimeric enzyme ATP Citrate lyase similar to ACLB-2 (ATP-citrate lyase B-2) [Arabidopsis thaliana] (TAIR:AT5G49460.1); similar to ATP citrate lyase a-subunit [Lupinus albus] (GB:CAC86995.1); similar to ATP:citrate lyase [Capsicum annuum] (GB:AAK13318.1); similar to ATP citrate lyase [Cyanophora paradoxa] (GB:CAB46077.1); contains InterPro domain ATP-citrate lyase/succinyl-CoA ligase; (InterPro:IPR005811); contains InterPro domain Succinyl-CoA ligase, alpha subunit; (InterPro:IPR005810) -0.245127095897999 -3.11410510099067 0.0135210229579878 1 4.05367941975599 19.6758588146783 -0.245127095897999 0.0582843560590101
AT3G44950_at 4.28207748057285 4.25841655420339 4.75819284871833 4.88871199456949 4.80680757409265 4.58453396177207 4.80423777841004 4.33569790531388 5.15626939764367 4.57569915394971 5.2482307841769 5.25957699056263 4.93901551891984 5.00194065790589 5.22644973763821 4.73648472689961 5.50577119744862 5.43666493718079 5.05499912869679 0.18781208428656 0.186784013910717 0.196644261418180 0.188783240966970 0.197143534962119 0.196201554205540 0.191692370854646 0.18887560845709 0.193316129520645 0.193958305655165 0.196313536587128 0.192137236466899 0.185874822370841 0.190615150849655 0.191987978440239 0.185590619652963 0.187601853357509 0.185590619652963 0.200468698188203 3 3 + 16432031 16432203 16432090.5 16432030 16432271 + gene protein_coding_gene FALSE TRUE AT3G44950.1 glycine-rich protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01985.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001075308.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001078942.1); similar to hypothetical protein YP_0969 [Yersinia pestis biovar Microtus str. 91001] (GB:NP_992344.1) 0.289865878620633 3.11399093747310 0.0135234213850801 1 4.05351780466519 9.63896253500906 0.289865878620633 0.0926336024216333
AT3G60770_at 10.5481940737212 10.5991917147889 10.1058552561075 10.2698972737119 9.99881995950467 10.1182792906671 10.3934200744436 10.6589404207976 9.31800674179008 9.60710883480387 9.4619548035293 9.81676372361982 9.30600739410724 9.29709808927371 10.0316776622806 9.08420482505376 9.19799828921375 9.10551988407554 9.50371872936878 0.0926234314177389 0.0948539357919564 0.0949374347867399 0.0929498959260893 0.095916306392823 0.101408130587351 0.0937692429951332 0.100019791698575 0.104241469356635 0.0933945728591542 0.095591539463120 0.092254960192044 0.0920396025492565 0.0982435941363283 0.0979869626408278 0.099206541864205 0.102729304323001 0.103700673702752 0.0940527084321414 3 0|3 /|- 22471502 22472495 22471888.778 22471265 22472754 - gene protein_coding_gene FALSE TRUE AT3G60770.1 40S ribosomal protein S13 (RPS13A) Identical to 40S ribosomal protein S13-1 (RPS13A) [Arabidopsis Thaliana] (GB:P59223;GB:P49203;GB:Q93V69;GB:Q93WJ4;GB:Q9LZY6); Identical to 40S ribosomal protein S13-2 (RPS13B) [Arabidopsis Thaliana] (GB:P59224;GB:O81311;GB:P49203;GB:Q9SLR4); similar to ATRPS13A (RIBOSOMAL PROTEIN S13A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G00100.1); similar to cytoplasmic ribosomal protein S13 [Panax (GB:BAA96366.1); contains InterPro domain Ribosomal S13S15 N-terminal; (InterPro:IPR012606); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) -0.245174322016708 -3.11166372354465 0.0135724097805526 1 4.05022302934731 19.7810403509087 -0.245174322016708 0.0585022365187462
AT1G76450_at 10.0684439831336 10.0844363921715 9.5591449349505 9.46035781436109 10.1985757584684 9.66677261606684 10.8663146018269 10.7813205415872 10.2268307058709 10.6706808057006 10.7981536629309 10.8217035145938 10.4651720450948 10.7474181119357 10.8612964851106 10.6752306314261 9.98605952850553 10.3600238837008 10.4402862563621 0.0964831971092382 0.0948667031807711 0.102096544938150 0.0978490552644521 0.0937854138856718 0.100143017202876 0.0939397199241441 0.0954134588639875 0.103558761868638 0.0924564285109886 0.0942521944854116 0.0951096821547996 0.093972860940512 0.0962030777796514 0.0949956467046596 0.092386760378162 0.104606643605540 0.09463722663271 0.092386760378162 1 1|0 +|/ 28689894 28690976 28690401.9 28689445 28691138 + gene protein_coding_gene FALSE TRUE AT1G76450.1 oxygen-evolving complex-related Identical to Unknown thylakoid lumen protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9S720); similar to thylakoid lumen protein, chloroplast precursor-related [Medicago truncatula] (GB:ABE82597.1); similar to Os08g0512500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062219.1) -0.292733227558528 -3.11036872858439 0.0135997496889217 1 4.04838940954867 20.6033282414325 -0.292733227558528 0.0947943509626646
AT3G15290_at 7.87747540118003 8.0824177765758 7.80842470579503 7.92311133637525 8.28177990350666 8.2950186511438 7.75005230565678 7.80379556455714 8.14219051702928 8.16963542176955 7.62228107156964 7.31709844586302 7.54611340666503 7.46737717021022 7.08811544163197 7.35355121974971 7.60683826750565 7.65685799284775 8.0270718125187 0.193154053318048 0.185652183522706 0.189205891844107 0.203347949601147 0.194095488011627 0.192608683221747 0.195381057146262 0.187773985120872 0.192851866878863 0.184703492510490 0.187596984135859 0.183759129973920 0.194324719627468 0.188640280778500 0.194860039462929 0.188438841525432 0.196489584914106 0.202299029421739 0.184684785638416 3 3 + 5145711 5146588 5146152 5145004 5146863 + gene protein_coding_gene FALSE TRUE AT3G15290.1 3-hydroxybutyryl-CoA dehydrogenase, putative similar to AIM1 (ABNORMAL INFLORESCENCE MERISTEM), enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT4G29010.1); similar to 3-hydroxybutyryl-CoA dehydrogenase [Bradyrhizobium sp. BTAi1] (GB:ZP_00861724.1); similar to Os01g0796400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044515.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, C-terminal; (InterPro:IPR006108); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; (InterPro:IPR006176); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase; (InterPro:IPR006180); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) -0.228519201443860 -3.10728248137298 0.013665137828561 1 4.04401887813534 15.7628819776544 -0.228519201443860 0.0417553337412482
AT4G25280_at 7.06033452099933 7.47364470994665 6.59040636014271 6.70627002953126 7.44710389909637 6.96366693069139 7.54539922529626 7.21698230836956 7.1772210964961 7.4346216628156 7.66884505361703 7.45631467601506 6.39019555635545 7.3135693401949 7.48982770609757 6.94890551855938 7.05367244371447 7.08781090736076 7.77333603410389 0.207314971266761 0.196181487850119 0.199983040722385 0.196181487850119 0.197792857731841 0.197646895196758 0.20517907464094 0.202876476003977 0.212541209067116 0.20022786526842 0.198894622926029 0.196181487850119 0.2030854411409 0.21093216835069 0.200374433411676 0.204329913380014 0.200997827948190 0.205276107290349 0.196181487850119 4 4|0 -|/ 12939095 12940420 12939659.125 12938966 12940754 - gene protein_coding_gene FALSE TRUE AT4G25280.1 adenylate kinase family protein similar to uridylate kinase [Arabidopsis thaliana] (TAIR:AT5G26667.3); similar to Adenylate kinase (ATP-AMP transphosphorylase) (GB:O24464); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850); contains InterPro domain UMP-CMP kinase; (InterPro:IPR006266) -0.341406000260027 -3.10656851033770 0.0136803112431814 1 4.04300767586522 14.4444104553648 -0.341406000260027 0.125487743975704
AT3G06483_at 10.6935062869307 10.8944582582918 10.5874825887447 10.6168617730679 11.1848398919416 10.7508949704114 10.6864933924482 10.4271979384462 9.89950494740976 10.1033488783413 10.593073445488 10.5953410791842 10.5961680831198 10.4057270250448 10.4897492018153 10.6237743646206 10.6320268684777 10.2675481702680 10.1528800852249 0.124870445828831 0.120637593031326 0.1242164630159 0.123806499235678 0.124923470446030 0.128309697882545 0.123753299044501 0.128811824677636 0.136211427339036 0.122610494500905 0.123185078785725 0.122131141311520 0.122013509407275 0.125000464380428 0.127974033714706 0.120637593031326 0.138795891315868 0.135597769342945 0.122158759704565 3 3|0 -|/ 1990749 1991542 1991229.222 1990422 1992750 - gene protein_coding_gene FALSE TRUE AT3G06483.1 PDK (PYRUVATE DEHYDROGENASE KINASE); ATP binding / [pyruvate dehydrogenase (lipoamide)] kinase Pyruvate dehydrogenase kinase (PDK) specifically phosphorylates the E1α subunit of the pyruvate dehydrogenase complex (PDC) on a Ser residue using ATP as a phosphate donor. PDK is a unique type of protein kinase having a His-kinase-like sequence but Ser-kinase activity. Site-directed mutagenesis and structural analysis indicate that PDK belongs to the GHKL superfamily. similar to mitochondrial pyruvate dehydrogenase kinase isoform 2 [Glycine max] (GB:AAT02656.1); similar to mitochondrial pyruvate dehydrogenase kinase [Brassica napus] (GB:ABA25867.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358) 0.291560281552894 3.1060838421195 0.0136906214722811 1 4.04232120999848 21.0188855542408 0.291560281552894 0.0942770231556212
AT3G48530_at 9.57128125292638 9.7269931125419 9.67871289134254 9.74315824326288 10.2583293853754 9.86309390911818 9.08910394621044 9.10926953739738 8.54459411678926 9.0264764821153 9.02379557987724 8.73235755357762 9.05693799463491 8.88766964982701 8.5067151459512 9.02505977531797 9.15060508012974 8.88456313424205 9.1062800083627 0.137589740180269 0.141830872379464 0.136476942312984 0.141891667456679 0.143437752460214 0.147458456714556 0.141590341992125 0.139346663901282 0.161406427834975 0.140492506777757 0.143585482215907 0.140912872612304 0.137399384186805 0.140628785146948 0.140756318869311 0.137433653191064 0.147691773927894 0.146484639739843 0.138576267646116 3 3 + 17999844 18000509 18000167.909 17998363 18000748 + gene protein_coding_gene FALSE TRUE AT3G48530.1 CBS domain-containing protein Identical to SNF1-related protein kinase regulatory subunit gamma 1 (AKIN gamma1) (AKING1) (KING1) [Arabidopsis Thaliana] (GB:Q8LBB2;GB:Q9S7W6); similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G69800.2); similar to AKIN gamma [Medicago truncatula] (GB:AAO61674.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.263837215889017 3.10568276192475 0.0136991596685598 1 4.04175311868759 18.5304493805805 0.263837215889017 0.0744370692113658
AT3G56840_at 7.12808355533159 7.23814020234871 7.39842848890287 7.14781952599968 7.47896872483357 7.27433271263707 7.95390777499868 7.46589137121454 7.1566681161868 7.24163630862461 6.56252006882892 6.38055089933918 6.66917591261225 6.83758743226669 6.47026044011257 6.94171857748592 7.18335808615099 6.83214314731686 7.26997198592616 0.206405918840781 0.191554951540882 0.196890190941978 0.193653078772204 0.202483490341126 0.202630575595066 0.200102559082672 0.190850068606483 0.216716244630731 0.192760231949702 0.193535299159868 0.197609241944704 0.196333026533151 0.191529926792738 0.200282357060036 0.190850068606483 0.206023725950732 0.209279746755006 0.193626986130173 3 3 + 21056388 21057077 21056668.364 21055296 21057293 + gene protein_coding_gene FALSE TRUE AT3G56840.1 FAD-dependent oxidoreductase family protein similar to FAD-dependent glycerol-3-phosphate dehydrogenase; Pyridine nucleotide-disulphide oxidoreductase, class I [Medicago truncatula] (GB:ABE83736.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) -0.30485642297255 -3.10485638665733 0.0137167690232213 1 4.04058259130053 14.3644081065800 -0.30485642297255 0.103102422976055
AT1G31340_at 8.94611327040566 9.11911116435195 9.68868011947189 9.53818889045809 9.43538804959537 8.93554884287232 9.7781914955642 9.78153854567853 9.5242297136596 9.38906237221657 10.0079089975023 9.894530812225 9.80448626176691 9.95261762075237 10.0244659700744 10.1310992868109 9.90224861100723 9.89819572003315 9.165781401833 0.143475755520591 0.144699463743109 0.142625099076321 0.138718471438219 0.131297486977240 0.141914313096946 0.130835736120047 0.136186438304714 0.148583398983607 0.132795636312260 0.130835736120047 0.130835736120047 0.130835736120047 0.133849070834989 0.134952848083993 0.132938482099475 0.149876191560915 0.138168467144427 0.138637160886407 1 1 - 11218105 11219337 11218672.125 11217826 11219439 - gene protein_coding_gene FALSE TRUE AT1G31340.1 RUB1 (RELATED TO UBIQUITIN 1) Encodes a ubiquitin-related protein that is conjugated to target proteins by neddylation. It has been shown to be conjugated to the cullin AtCUL1. The RUB-conjugation pathway has been implicated in in auxin response. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to NEDD8-like protein RUB2 precursor (Ubiquitin-related protein 2) (AtRUB2) (RUB2) [Arabidopsis Thaliana] (GB:Q8RUC6); Identical to NEDD8-like protein RUB1 precursor (Ubiquitin-related protein 1) (AtRUB1) (RUB1) [Arabidopsis Thaliana] (GB:Q9SHE7); similar to UBQ7 (RELATED TO UBIQUITIN 2) [Arabidopsis thaliana] (TAIR:AT2G35635.1); similar to Os09g0420800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063199.1); similar to polyubiquitin 2 [Deschampsia antarctica] (GB:AAM22748.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.29273292702557 3.10444011411682 0.0137256483573586 1 4.03999293414924 19.0586627085954 0.29273292702557 0.0951684723456231
AFFX-CreX-3_at 13.2194938905816 12.9966932598356 13.5370342250231 13.3431509099541 12.9468025822121 13.1380818976947 12.8570851760628 12.9488121549106 2.04456426380002 1.87635433127342 2.35802873910263 1.83559312164759 2.09564174080477 1.91247752373499 2.07064986698065 2.35980850208349 2.33668810432408 2.07779863454553 1.68168090114640 0.314748096624827 0.314648152392422 0.313735635842683 0.314056256341157 0.311446690917921 0.314187862618903 0.312649690690213 0.316109740666183 0.299055027851785 0.299444991339477 0.295481940721449 0.297451475842133 0.296140405504 0.300286567402161 0.298031970678017 0.299229398912164 0.302413625859742 0.299970761764592 0.301766038104569 NA NA NA NA NA FALSE FALSE 0.249524448559862 3.10352924082058 0.013745098682148 1 4.03870261101249 15.1225787343141 0.249524448559862 0.0629292235369323
AT3G50530_at 8.26079795321746 8.33552879828328 8.13614882740263 8.02228497638057 8.61266912854864 8.57615193268893 9.1551691255148 9.24763327333204 8.64125030944401 9.2527966627413 8.82144121368193 9.11122142604035 9.27686118047174 9.0517801091992 8.93619072370776 9.1914830422458 9.00022270642431 8.98465183741532 9.3207750349354 0.132551971881885 0.129222083719478 0.140818790129076 0.142695491265987 0.135052597031889 0.134606574236641 0.133478933056032 0.135536443031697 0.144758322424962 0.134434698366525 0.131351706696455 0.129795610774845 0.130160706064905 0.129436908846915 0.137975933190973 0.132800583432184 0.137569388312493 0.138074191289683 0.135510388627335 3 3|0 +|/ 18766615 18767443 18767182.7 18764522 18767754 + gene protein_coding_gene FALSE TRUE AT3G50530.1 CRK (CDPK-related kinase); calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase CDPK-related kinase similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT3G56760.1); similar to CRK1 (CDPK-RELATED KINASE 1), calcium ion binding / calcium-dependent protein serine/threonine phosphatase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41140.1); similar to calcium-dependent protein kinase, putative / CDPK, putative [Arabidopsis thaliana] (TAIR:AT1G49580.1); similar to CDPK-related protein kinase [Gossypium hirsutum] (GB:AAZ83348.1); similar to calcium/calmodulin-dependent protein kinase CaMK3 [Nicotiana tabacum] (GB:AAL30820.1); similar to CDPK-related protein kinase (PK421) (GB:P53681); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.218922188570147 -3.10105932838033 0.0137979843975747 1 4.03520340405876 17.6024674347236 -0.218922188570147 0.0291805264682718
AT1G51080_at 5.61431572055463 5.61265921522645 5.88495256665422 5.88349707011337 6.42261091264422 6.12845544030743 6.94580950826474 6.61482909973507 5.28617233127251 6.22219217297938 6.67218045055187 6.7274381704268 6.36111452855499 6.60543891893736 6.7281240517894 6.7885263352208 6.31327099268848 6.11887877526317 6.16134909963778 0.188496156148255 0.184735056433294 0.185222080558585 0.184890220534428 0.182293125223312 0.193344755441434 0.185066159228622 0.190455833119550 0.187419544965242 0.180997032895887 0.183484857829316 0.181566617525160 0.182964415274535 0.183109259892844 0.181813588030016 0.180690255005577 0.188455517712225 0.194190848693702 0.188347165025615 1 1 - 18933583 18934126 18933868.455 18933412 18934420 - gene protein_coding_gene FALSE TRUE AT1G51080.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80919.1) 0.266221302391905 3.10004148863373 0.0138198399253617 1 4.03376123419025 12.3530292229670 0.266221302391905 0.0766302651634956
AT3G15090_at 6.93244096066503 7.08084172221461 7.0604626912332 6.90331708814501 6.92243974925448 6.89761543751193 7.88435683806022 7.57903955510413 6.43490736523050 6.7590161479906 6.27740634869501 6.58046871672015 6.57133044958667 6.69585002662765 6.34333540460365 6.68045833763709 6.97651338587014 6.46220909604415 6.76574529174936 0.163992499930036 0.166852766791363 0.161945544059958 0.159744833965117 0.159878791474319 0.159744833965117 0.174029058987691 0.169702457334158 0.171153460833384 0.159744833965117 0.166745582561185 0.160027079094527 0.162018722518488 0.159879686658871 0.16645502728769 0.159744833965117 0.178250971158953 0.162555033816740 0.170315367087431 3 3|0 +|/ 5077972 5078804 5078272.1 5076696 5079123 + gene protein_coding_gene FALSE TRUE AT3G15090.1 oxidoreductase, zinc-binding dehydrogenase family protein similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G23740.1); similar to Os01g0753100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044271.1); similar to oxidoreductase [Setaria italica] (GB:AAP22423.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.251493745870965 -3.09970233747904 0.0138271303344076 1 4.03328067231662 13.7708989581302 -0.251493745870965 0.0648787488424255
AT3G20650_at 5.93370563187649 6.36945107100977 6.69809606876387 6.29985230684285 7.4694449760419 6.94747319127532 6.98951441942185 5.87302401323188 4.80441495758214 5.29246108912135 5.79310572452985 5.89538690311309 5.50843943647077 5.36402391259061 5.60520038481973 5.94015610060471 5.73991408368673 5.29154681378788 5.23151849267746 0.261289422173375 0.255213553222503 0.26629139856567 0.261934615734217 0.251908300691703 0.271071371392453 0.254913974263167 0.253762363847805 0.280455123537596 0.250139070072413 0.250139070072413 0.257163631137129 0.250139070072413 0.260070650644983 0.265999916923192 0.250759327559033 0.252169865656046 0.25921499525818 0.255662502669832 3 3|0 -|/ 7221353 7222721 7222057.6 7220805 7224091 - gene protein_coding_gene FALSE TRUE AT3G20650.1|AT3G20650.2 mRNA capping enzyme family protein Identical to mRNA cap guanine-N7 methyltransferase 1 (EC 2.1.1.56) (mRNA (guanine- N(7)-)-methyltransferase 1) (mRNA cap methyltransferase 1) [Arabidopsis Thaliana] (GB:Q9LHQ7;GB:Q3EB33); similar to mRNA capping enzyme family protein [Arabidopsis thaliana] (TAIR:AT3G52210.1); similar to Os08g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061136.1); similar to mRNA cap methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55592.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain mRNA capping enzyme, large subunit; (InterPro:IPR004971) 0.547524837668048 3.0991244302669 0.0138395622746079 1 4.03246177970381 11.9484134680134 0.547524837668048 0.236489031731613
AT1G72450_at 9.66688509177203 9.6392087841478 9.89763944299324 9.82681586071152 10.2598738713157 9.9165703278666 9.98111664484731 9.95861376990586 10.5900926010055 9.75157732363322 10.7980025330556 10.3910409562611 10.5883092960163 10.5893965447887 10.1453991640999 11.0749186172969 10.5424824787283 10.43509547358 10.3805493305771 0.0983599571771452 0.0953402642962665 0.110515720775970 0.106779120840711 0.100659355573029 0.104277227571300 0.100352631608518 0.0971523356825169 0.105170929350778 0.103476842273272 0.0965273834786146 0.0939905342963221 0.105557192331036 0.0952834657157425 0.101084041012624 0.0977067390072897 0.102188888315655 0.100654765733504 0.0953493448529894 1 1 - 27278052 27279235 27278425.182 27277727 27279979 - gene protein_coding_gene FALSE TRUE AT1G72450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17380.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); similar to Os07g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060268.1); similar to Os03g0402800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050322.1); contains InterPro domain ZIM; (InterPro:IPR010399) 0.246804842146626 3.09746054783379 0.0138754206967881 1 4.03010389380076 20.2990006665535 0.246804842146626 0.0609746167211336
AT1G42480_at 6.39458010744198 6.66167762607071 6.61209054039837 7.13813222053188 5.98257429674012 5.95927237508375 5.41408914584126 5.82708183525362 5.26756038695287 5.16319739035683 5.59594462354719 5.6750903653258 5.36222747694547 5.57984523336335 5.68811669230516 5.22780638172306 4.97806642862953 5.3714904466175 4.88592779690915 0.225035259397864 0.229724342274323 0.221999435171108 0.228456745629146 0.217291237445836 0.241479928026922 0.217291237445836 0.221051008204342 0.232205685917627 0.225619559841251 0.225913967715489 0.22565026731353 0.220448225491525 0.22809850676393 0.221550939043025 0.223250798803178 0.229504275998968 0.230194200676092 0.222868199595185 1 1|0 +|/ 15938755 15940950 15939643.556 15938670 15941303 + gene protein_coding_gene FALSE TRUE AT1G42480.1 similar to Saposin B [Medicago truncatula] (GB:ABE83256.1); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886) 0.338960888760412 3.0965050759007 0.0138960558019233 1 4.02874978175625 11.5188799254852 0.338960888760412 0.124691484477864
AT2G05320_at 5.80840309778505 6.29347193616772 6.48799461953342 6.59831194292429 6.0386337954593 5.64434440582833 4.9681348867682 5.04233075770992 5.29489548412867 4.50442112836216 4.98739708019587 5.10269299110201 4.39955191852676 5.27459200212629 4.7063661208903 4.87394667687725 4.71649865141528 5.13546298466287 4.99888691995234 0.238497331725385 0.253594078698267 0.23375710896793 0.234673129129680 0.245218899322842 0.240872895012683 0.23664782999409 0.232239233830595 0.231512959571833 0.235170353771225 0.230769030833008 0.230481748054288 0.229192899050440 0.227327044461052 0.235922550195364 0.229191779006719 0.252004687811939 0.239628588156883 0.232787048349580 2 2 + 1936728 1937280 1936981.364 1936013 1937461 + gene protein_coding_gene FALSE TRUE AT2G05320.1 beta-1,2-N-acetylglucosaminyltransferase II similar to beta 1,2 N-acetylglucosaminyltransferase [Populus alba x Populus tremula] (GB:CAI72505.1); contains InterPro domain N-acetylglucosaminyltransferase II; (InterPro:IPR007754) 0.315532531869403 3.09354727278582 0.0139601374029520 1 4.02455740490723 10.7763522122915 0.315532531869403 0.110596802647892
AT4G12750_at 5.63749225012785 5.52418514057507 5.48316908801087 5.41728028513262 5.54836240202108 5.44053418566493 4.8850244077724 4.67092412876708 3.55985571923449 4.18645708799333 3.83813784685750 4.12419543864303 4.22663849441848 3.5305930964794 4.22622969097319 4.10324205267333 4.90496219880258 3.89997955839548 4.05911118332475 0.257671312789356 0.251299314673836 0.249925662848093 0.254440129970555 0.256325287386024 0.271477125763265 0.251426492618861 0.254002967360230 0.268280080937800 0.250182312386806 0.253565484832151 0.25440085003918 0.249232203141676 0.257279126874281 0.261833593850429 0.252289605761534 0.250169012348893 0.251385428081807 0.249232203141676 4 4|0 -|/ 7498243 7498984 7498578.6 7497811 7503640 - gene protein_coding_gene FALSE TRUE AT4G12750.1 DNA binding / sequence-specific DNA binding / transcription factor similar to HB-1 (homeobox-1), transcription factor [Arabidopsis thaliana] (TAIR:AT1G28420.1); similar to DDT [Medicago truncatula] (GB:ABE90616.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.232267987683975 3.09199538763288 0.0139938822881784 1 4.02235745339668 9.34681579967877 0.232267987683975 0.0472808933679364
AT3G28220_at 9.11096546500221 9.35727931110972 5.39028404675463 5.30311913302311 7.40603091371293 6.9698052963802 6.43491505904735 6.72917620323589 5.14573639868590 6.06983805275348 5.68222378222986 8.26226310870517 7.79646907888453 6.08542081490545 6.95359969462009 7.81449200477047 5.37900622981659 6.21451108236684 5.99072740524221 0.310580790308661 0.313190297197145 0.306886203312642 0.317869275760203 0.313092762788187 0.306886203312642 0.311612018087501 0.315415914403496 0.327384013316594 0.306886203312642 0.319482321268143 0.306886203312642 0.306886203312642 0.315336467723731 0.309579899748755 0.308204826769678 0.314481368458339 0.306886203312642 0.311194202978001 3 3 + 10526444 10527644 10526812.455 10525641 10527965 + gene protein_coding_gene FALSE TRUE AT3G28220.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to ZW9 [Arabidopsis thaliana] (TAIR:AT1G58270.1); similar to hypothetical protein DDBDRAFT_0218221 [Dictyostelium discoideum AX4] (GB:XP_641246.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.301354944910444 -3.09169432676629 0.0140004385105166 1 4.02193064452465 13.3421630169155 -0.301354944910444 0.101668789207891
AT2G27060_at 5.28386891654272 5.97440984430362 4.56298151181312 3.80782110678684 5.03248034798411 5.64147993200703 5.92581275226485 6.11738175299435 7.44503555816829 7.07980889391365 7.65761862430974 7.78180105603669 7.36253449958657 7.28259690478692 7.92885808168942 7.2114163422344 6.51414202860774 8.03736239837224 7.64977520454353 0.171669991867341 0.167772085747449 0.172209032798605 0.169558543736659 0.186176730438908 0.169880261848662 0.169859290100858 0.163996517533223 0.169875389217569 0.164668793066039 0.171490072221407 0.165441519535438 0.169420275560239 0.173145765674899 0.172601818068434 0.162942469160029 0.168866339667944 0.165054031402573 0.167996067973659 2 2 + 11561063 11561560 11561342.818 11558119 11561853 + gene protein_coding_gene FALSE TRUE AT2G27060.1 ATP binding / protein serine/threonine kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G10020.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82620.1); similar to 52O08_19 [Brassica rapa subsp. pekinensis] (GB:AAZ67565.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95661.1) -0.491838117733735 -3.09061049449209 0.0140240676626119 1 4.02039404635239 12.7250700843345 -0.491838117733735 0.208722376132278
AT1G51650_at 9.45468644067633 9.5463402141654 9.59706187050529 9.68807874149624 9.44241078244967 9.0323475877185 9.39946937036928 9.3837735336749 9.21068710777716 9.4634261600179 9.96804684832196 10.0973867104902 9.82706791731848 9.82505835461104 9.9680591321633 9.76525080822081 9.53197623274615 9.5982885161711 9.2007153394362 0.126153299624495 0.124526824220785 0.122638974880243 0.127229800948171 0.123316256063363 0.126961523978185 0.126872829183669 0.121993009263099 0.130586065886963 0.125750676579705 0.118553562133157 0.121783221480032 0.121656876166068 0.131240803879415 0.122173995819302 0.120408267259898 0.136229952950228 0.133528359976111 0.123634207186022 1 1|0 +|/ 19156367 19156491 19156429.667 19156283 19157597 + gene protein_coding_gene FALSE TRUE AT1G51650.1 ATP synthase epsilon chain, mitochondrial Identical to ATP synthase epsilon chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q96253); similar to ATP synthase epsilon chain, mitochondrial (GB:Q06450); contains InterPro domain ATPase, F1 complex, epsilon subunit, mitochondrial; (InterPro:IPR006721) 0.262469817541291 3.08938674412441 0.0140507970983956 1 4.01865895298652 19.0001467430065 0.262469817541291 0.0744502539725901
AT1G64520_at 10.0753680268393 10.1789434002675 10.3111419718112 10.3848731797319 10.3858971188250 10.0541451326338 10.0843313174266 9.8773652336469 9.53173996263005 9.47383249803977 9.91936275358408 9.8676973261184 9.57472213447997 9.71115453816303 9.85728521241598 9.60208020313843 9.58623963845528 9.577613214107 9.27128061950258 0.122095629749487 0.118177667516123 0.120594473285280 0.118241863209604 0.117300283973634 0.123312701995851 0.120668745027761 0.121106279087576 0.131217752767930 0.123304054475663 0.119385803468387 0.117387992739690 0.11926128970964 0.130215667303860 0.121223956796107 0.121074444403706 0.128783236442325 0.121524706096553 0.124824914249300 1 1 + 23961088 23961736 23961346.636 23960049 23961985 + gene protein_coding_gene FALSE TRUE AT1G64520.1 26S proteasome regulatory subunit, putative (RPN12) similar to 26S proteasome non-ATPase regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT5G42040.1); similar to 26S proteasome regulatory particle non-ATPase subunit 12 [Camellia sinensis] (GB:ABI31652.1); contains InterPro domain 26S proteasome non-ATPase regulatory subunit Nin1/mts3; (InterPro:IPR006746); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) 0.258207020186172 3.08850009086175 0.0140701966793685 1 4.0174017284676 19.7378267081221 0.258207020186172 0.0711544063690357
AT3G52590_at 11.6189183236433 11.6707188032304 11.1067422399924 11.1219501732354 11.2034103646057 11.1240187783829 11.4989621640728 11.7423316907050 11.2548233457596 11.5477078006583 11.5545677633808 11.8345591969144 11.3403492119018 11.4131432229968 11.9201616226889 11.2736106799042 11.1925024876089 11.1321632072723 11.4681365254647 0.0894039231341326 0.0863097706136734 0.0928524204187564 0.091143047581938 0.0863097706136734 0.09370701257891 0.0886491770052308 0.088122883939003 0.100362990605645 0.0863097706136734 0.0910674750250535 0.089012725191925 0.0863097706136734 0.089454626506661 0.090881405267773 0.0890609993352081 0.101365317788129 0.0984898170276933 0.087676088363164 3 3|0 +|/ 19516652 19517503 19516998.857 19516607 19517910 + gene protein_coding_gene FALSE TRUE AT3G52590.1 UBQ1 (EARLY-RESPONSIVE TO DEHYDRATION 16, UBIQUITIN EXTENSION PROTEIN 1); protein binding Ubiquitin extension protein Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); Identical to 60S ribosomal protein L40 (CEP52) (UBQ2) [Arabidopsis Thaliana] (GB:P19232;GB:Q9S7X3); similar to ubiquitin extension protein 2 (UBQ2) / 60S ribosomal protein L40 (RPL40A) [Arabidopsis thaliana] (TAIR:AT2G36170.1); similar to ubiquitin fusion protein [Arachis hypogaea] (GB:AAZ20285.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ribosomal protein L40e; (InterPro:IPR001975) -0.229813036451390 -3.08356770405599 0.0141786247487631 1 4.01040659792522 22.8264755995890 -0.229813036451390 0.0452749901014195
AT2G20230_at 10.3114994195961 10.5577370022498 10.5571878638456 10.7385292214627 11.2292279616178 10.912876339723 10.6241848722922 10.6102256573440 10.5583690066092 10.5106085394969 10.6604830485623 10.6485224296399 10.8803736842938 10.8568064483022 10.4622008900873 10.7980127495874 10.6128978946097 10.8081821204898 10.4946632760251 0.0943340848735285 0.0885095075443653 0.0995612369902166 0.0953263702386375 0.0911414519577587 0.093257757531335 0.0908581107829075 0.0913222375588718 0.0934678949356453 0.0891254996289849 0.0903656466496518 0.0885063769104084 0.089432018474734 0.0929897971108957 0.0956740017267639 0.0875203304914311 0.0968754599471258 0.0904902807706817 0.0934698490287955 2 2|0 +|/ 8733538 8734434 8733987 8732622 8734823 + gene protein_coding_gene FALSE TRUE AT2G20230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G28770.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE93060.1); similar to Os06g0731400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058664.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.264132454805629 3.08254950109155 0.0142011157674551 1 4.00896230861181 21.3112578000532 0.264132454805629 0.076181572774744
AT1G12250_at 9.57136877555192 9.4861398965218 9.2124774205722 9.23790312516005 9.72339247734975 9.19371247433946 10.2208788641558 10.0694535894001 9.7102824330819 10.0658975649676 9.805489075494 9.69990888868601 9.77974189763051 9.97687774576427 9.88658604077745 10.1185894719070 9.73426696761332 9.6811830421485 10.0009864246576 0.109265693184832 0.110741728663975 0.111756979027041 0.111579401283064 0.110301508420883 0.123562678831696 0.112470394585821 0.111654005305957 0.120958524762843 0.113968435140601 0.111485983029339 0.108227034033982 0.108227034033982 0.111659355626525 0.113777198725699 0.108227034033982 0.125072666621606 0.118249732557385 0.108227034033982 1 1 + 4159653 4161213 4160403.909 4159263 4161453 + gene protein_coding_gene FALSE TRUE AT1G12250.1|AT1G12250.2 thylakoid lumenal protein-related similar to thylakoid lumenal 15 kDa protein, chloroplast [Arabidopsis thaliana] (TAIR:AT2G44920.2); similar to Os02g0643500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047560.1); similar to thylakoid lumenal protein-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL56824.1); contains InterPro domain Pentapeptide repeat; (InterPro:IPR001646) -0.292740328350896 -3.08241149327291 0.0142041670664640 1 4.00876654172128 19.4699420939589 -0.292740328350896 0.0965702316016226
AT3G03340_at 7.91691880726636 7.77103369875467 7.87361310538148 7.79682739018965 7.98817577601136 8.13992510415236 7.43451246620291 7.27880560150856 6.76348076858012 6.82269479713644 7.01335790625333 6.88892184087589 6.84427819685056 7.10886442971724 6.87403355248067 7.02257632021777 7.30613308443604 6.82974932876564 7.03182686300397 0.189161075706638 0.192240899682840 0.197015120377534 0.193844678980474 0.194814441253312 0.200220848705649 0.19281160875416 0.193785618732991 0.207536348019996 0.192631533650752 0.188992397165063 0.188992397165063 0.193992454510387 0.188992397165063 0.201032088408599 0.191749716235986 0.194167110394520 0.196478150089366 0.194300169149501 3 3|0 +|/ 788454 789611 789121.444 786327 790084 + gene protein_coding_gene FALSE TRUE AT3G03340.1 UNE6 (unfertilized embryo sac 6) similar to LUC7 N_terminus domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G17440.1); similar to RNA-binding protein Luc7-like 2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99834.1); similar to Os03g0843500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051864.1); contains InterPro domain LUC7 related; (InterPro:IPR004882) 0.231319778355031 3.08013056913342 0.014254696255429 1 4.00553076016403 14.7043048980283 0.231319778355031 0.0472191937807985
AT4G33080_at 8.593249357471 8.85942070690596 8.76965483764408 8.88017052931669 9.30184149251134 9.17811542207355 9.23767861989487 9.40720062792053 8.68437699407275 8.63221306929604 9.22998314490738 8.93409450198816 9.05379381338575 9.14151546587366 8.6249745154212 9.42006203441154 9.26533365738636 8.84838854705017 8.42456321694689 0.144083680392792 0.145440510003277 0.154202612775553 0.147280576069737 0.148271337158987 0.149471038629607 0.152577382308568 0.143237529045393 0.153803433611452 0.151707534236610 0.143227089215999 0.143131495363800 0.148100558808924 0.151057397347981 0.147941476121718 0.144841468918921 0.148640986046798 0.149634357860569 0.152755790063127 4 4|0 +|/ 15961965 15963799 15962814 15959965 15964713 + gene protein_coding_gene FALSE TRUE AT4G33080.1|AT4G33080.2 protein kinase, putative|kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19400.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G23310.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.3); similar to protein kinase [Raphanus sativus] (GB:BAC76895.1); similar to protein kinase [Spinacia oleracea] (GB:CAA82991.1); similar to protein kinase [Raphanus sativus] (GB:BAC76896.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G19400.1); similar to protein kinase [Raphanus sativus] (GB:BAC76895.1); similar to protein kinase [Spinacia oleracea] (GB:CAA82991.1); similar to protein kinase [Raphanus sativus] (GB:BAC76896.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.246221012809729 3.07990677906192 0.0142596639213926 1 4.00521326063813 17.8509927676297 0.246221012809729 0.0616975086102364
AT2G42080_at 5.02140619083831 5.10846804659701 4.87348634498969 4.68862477683095 4.93139802074667 4.62932858736838 5.21046612592856 5.05813801928166 4.85884850804373 4.96748584173857 4.73907700867841 4.79428614785142 4.82334596141162 4.69461307323362 4.94634238399199 4.74060904329562 4.83105249282614 4.6879943889452 5.08629075130348 0.209276590479733 0.210383760756141 0.213681053420859 0.211502420504793 0.207165723387377 0.208434292530296 0.211650460768608 0.211018095504856 0.212523347188978 0.210150586457328 0.211361666271796 0.205155033038377 0.211807267478292 0.211327240086158 0.205155033038377 0.208237113171319 0.211515384371269 0.214738271680287 0.210565939228575 2 2|0 -|/ 17560514 17561655 17561010 17560326 17562565 - gene protein_coding_gene FALSE TRUE AT2G42080.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58020.1); similar to Os07g0470800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059604.1); similar to DnaJ protein family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06950.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.253810067171733 -3.07652560823402 0.0143349381481121 1 4.00041572709856 9.8166845621849 -0.253810067171733 0.0683956521372839
AT1G36990_at 5.14043315371782 5.20620894911466 5.044923401927 5.09362576145666 5.70025861572283 5.72595912853956 5.32518867696481 4.9915361485302 4.69251584742432 4.53999453187702 4.84741451305052 5.05009536662726 5.35677564953991 5.0937442717753 4.75963123418938 5.09811247177701 5.27883126538856 4.42560518102878 4.94847063356311 0.218646995496291 0.224735911457298 0.226706857275812 0.219933725211974 0.227698425345938 0.228481506761257 0.218646995496291 0.222012600497291 0.237318874807023 0.218686183236728 0.219107152719246 0.218646995496291 0.223081979879792 0.234610229194133 0.226976406174688 0.228299746995877 0.222368960920787 0.220002262767159 0.218646995496291 1 1 - 14030076 14030685 14030473.273 14029733 14032941 - gene protein_coding_gene FALSE TRUE AT1G36990.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08510.1); similar to Os04g0448200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052921.1); similar to proteophosphoglycan ppg1 [Leishmania major strain Friedlin] (GB:XP_843164.1); similar to OSJNBa0064H22.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01568.2) 0.243566284023457 3.07574632411565 0.0143523456667716 1 3.9993098605557 10.1364016870601 0.243566284023457 0.0596179975687539
AT1G79460_at 7.0622806870984 6.86021394019674 6.67568000302605 6.02842454115745 7.73164772812553 7.10098044426077 7.85475240715225 7.33318738907573 5.70801444518451 7.13876900305011 8.25105948268991 8.24638819935715 7.43407832713399 7.99926290628033 7.99580397110673 6.60201551612467 6.74304656313309 8.0764797447732 6.32458393905814 0.21670790440383 0.221785002004293 0.216062023895306 0.224217189137722 0.216062023895306 0.224846197746650 0.219289858746171 0.221594176887427 0.225351790141231 0.216062023895306 0.216062023895306 0.216062023895306 0.216062023895306 0.216062023895306 0.216247862049330 0.216070591564157 0.217742069467938 0.218520282812657 0.222865706280699 1 1 + 29898489 29899285 29898760.455 29895285 29899480 + gene protein_coding_gene FALSE TRUE AT1G79460.1 GA2 (GA REQUIRING 2); ent-kaurene synthase Encodes for a protein with ent-kaurene synthase B activity which catalyzes the second step in the cyclization of GGPP to ent-kaurene in the gibberellins biosynthetic pathway. Identical to Ent-kaurene synthase B, chloroplast precursor (EC 4.2.3.19) (KSB) (AtKS) (GA2) [Arabidopsis Thaliana] (GB:Q9SAK2;GB:O64952;GB:Q67ZQ6); similar to terpene synthase/cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G61120.1); similar to kaurene synthase [Stevia rebaudiana] (GB:AAD34294.1); similar to ent-kaurene synthase [Cucumis sativus] (GB:BAB19275.1); similar to ent-kaurene synthase No1 [Lactuca sativa] (GB:BAB12441.1); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Terpene synthase, metal-binding; (InterPro:IPR005630); contains InterPro domain Terpene synthase-like; (InterPro:IPR001906) 0.442317808161149 3.07521246351399 0.0143642836365296 1 3.99855223888808 14.1103822098062 0.442317808161149 0.183922338276875
AT1G22780_at 9.80625424262204 10.1008693498790 9.40323720575384 9.3663277463096 9.62991436646846 9.6040986387522 9.8050755020679 10.0362432047524 9.6079829932267 9.48130434221176 9.5955041056282 10.0819591909781 9.28719544455357 9.39551110640607 10.0090667921283 9.11337098311786 9.04216207936702 9.1116803295847 9.46465023181927 0.120400241217041 0.118639203024271 0.117497565946134 0.120602146093599 0.122733856624165 0.117964526089994 0.122204340803866 0.121181751150269 0.120228876904219 0.119566249296453 0.118344645389073 0.12118596595466 0.125169127797661 0.121981105220303 0.118479834791705 0.115304226756852 0.128828588711299 0.116182349641383 0.125762288651844 1 1|0 +|/ 8068165 8069123 8068649.3 8067853 8069331 + gene protein_coding_gene FALSE TRUE AT1G22780.1 PFL (POINTED FIRST LEAVES); structural constituent of ribosome S18 ribosomal protein involved in the binding of f-Met tRNA during initiation of mRNA translation. Expression restricted to meristems. Mutant phenotype-pointed first leaves,reduced fresh weight, growth retardation. Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to 40S ribosomal protein S18 (RPS18B) [Arabidopsis thaliana] (TAIR:AT1G34030.1); similar to RPS18C (S18 RIBOSOMAL PROTEIN), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G09800.1); similar to Ribosomal protein S13 [Medicago truncatula] (GB:ABE81204.1); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.249819510312378 -3.07336954393967 0.0144055736091898 1 3.99593669065561 19.2052702536039 -0.249819510312378 0.065272890183941
AT4G16240_at 7.68322091513293 7.2847132523997 7.96352145590982 7.47309218466069 7.84519878929415 7.80093175725222 7.23877001667576 7.33067731701764 8.4120479399099 8.33471964916784 8.49326637671964 8.2401295623989 8.26084508796427 8.83582059357165 8.51118658705826 8.06380475574855 8.44047785355497 8.72898334382196 7.87029735878494 0.117506027695985 0.117216304657216 0.121374366597896 0.130148556181272 0.121607488339595 0.124054256846925 0.125280364750461 0.121300913944729 0.117038950498045 0.122489183652146 0.119742719629448 0.117063502189966 0.117929817778086 0.120335057786792 0.118675388224224 0.120889080236727 0.117105897913602 0.124142670039108 0.118500748919313 4 4 - 9192357 9192436 9192400.364 9192351 9192583 - gene protein_coding_gene FALSE TRUE AT4G16240.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G46730.1); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G05440.7); similar to glycin-rich protein [Vigna unguiculata] (GB:CAA61200.1); similar to Os03g0309300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049911.1) 0.313733312811631 3.07315975650131 0.0144102816377912 1 3.99563893276343 15.9037670040724 0.313733312811631 0.110773336487164
AT1G05560_at 3.73372882842136 4.14714261028588 3.67578716049007 4.01876772272140 4.09158551035252 3.99063098492694 5.06807361698521 5.12748462451493 4.69839300862824 5.40674566121873 4.47828288064764 5.31430351331204 4.17477688078409 5.00969748913863 4.85213687550364 6.02999407414054 5.69684377190469 5.04042076996807 5.13219180231924 0.203316956083651 0.196895940544627 0.206320553389898 0.200551323892312 0.200962260686915 0.200690882182765 0.203906951946434 0.201826858187555 0.209826032059465 0.195569946258534 0.199428556995699 0.195569946258534 0.197000925096966 0.205813682459038 0.195569946258534 0.204541584208319 0.195834042023215 0.199890906818562 0.202249928524698 1 1 - 1645714 1646115 1645921.727 1645497 1647146 - gene protein_coding_gene FALSE TRUE AT1G05560.1 UGT1 (UDP-glucosyl transferase 75B1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups A UDP-glucose transferase localized in the phragmoplast. It has been co-purified with the callose synthase complex and may transfer UDP-glucose from sucrose synthase to the callose synthase and thus help form a substrate channel for the synthesis of callose at the forming cell plate. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. UGT1 encodes a protein with glucosyltransferase activity with high sequence homology to UGT2 (AT1G05530). It belongs to an UGT subfamily that binds UDP-glucose but not UDP-glucuronate, UDP-galactose, or UDP-rhamnose as the glycosyl donor. UGT1 was shown to be able to use abscisic acid as glycosylation substrate in the presence of UDP-glucose. similar to UGT2/UGT75B2 (UDP-glucosyl transferase 75B2), UDP-glucosyltransferase/ UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05530.1); similar to glucosyltransferase NTGT2 [Nicotiana tabacum] (GB:BAB88935.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.289733850446465 -3.07302478290726 0.0144133115469950 1 3.99544735847624 9.30848372699411 -0.289733850446465 0.0951435758379627
AT4G19860_at 10.70032718387 10.7071879059542 11.0600559190942 11.0715740546505 11.1600031022854 11.1409163667825 10.4408037134274 10.3337660629338 10.7942993120746 10.7942975599333 10.6736742309841 10.3075617987541 10.7444429390495 10.6255129490622 10.3449772496449 10.8083995965720 10.8780914447064 10.8271441072077 10.7826182723130 0.0625230016325828 0.0627136109230133 0.06401227103248 0.06378998486317 0.0633181782790848 0.0672892867398564 0.0624271569704109 0.0649859492982688 0.0653772772636359 0.0643359253452217 0.0653083794408658 0.0637002068006772 0.0649177925109242 0.065477112565806 0.0633974730904353 0.0623267797647195 0.0673405001156354 0.062839304712578 0.064144140616553 4 4|0 -|/ 10777675 10778807 10778016.556 10777522 10780471 - gene protein_coding_gene FALSE TRUE AT4G19860.1 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to lecithin:cholesterol acyltransferase family protein / LACT family protein [Arabidopsis thaliana] (TAIR:AT3G03310.1); similar to lecithine cholesterol acyltransferase-like protein [Lycopersicon esculentum] (GB:AAQ04833.1); similar to Os04g0615100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053867.1); contains InterPro domain Lecithin:cholesterol acyltransferase; (InterPro:IPR003386) 0.211718317773706 3.07211513542494 0.0144337487364596 1 3.99415621213503 21.5476445824270 0.211718317773706 0.0189580567106571
AT3G53570_at 6.89672606641677 6.75282038599908 7.14139050623116 7.36878362815872 7.13229020426421 7.15784093545586 7.05836749695637 6.7414944968037 6.88080806572333 7.07788504604486 6.93277918936442 7.48101181169491 7.17780054773345 7.2438802740273 7.12918053159095 7.31605260878484 7.11743954401652 6.86668816882238 6.98129683408061 0.151846730083564 0.153265981652868 0.156297966611616 0.153221135765485 0.156028131119362 0.150666107264228 0.152041526536904 0.157059605130521 0.157985963706043 0.151252056144767 0.163012445351964 0.153901840748551 0.150773550203725 0.156645061970872 0.154970153784705 0.15570713843537 0.154868737219990 0.153514487671558 0.154879048635255 3 3|0 -|/ 19872437 19873348 19872784.875 19872157 19875566 - gene protein_coding_gene FALSE TRUE AT3G53570.1|AT3G53570.2|AT3G53570.3|AT3G53570.4 AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase a member of a CDC2-related kinase subfamily, the LAMMER kinases. activates STE12-dependent functions in yeast. Identical to Serine/threonine-protein kinase AFC1 (EC 2.7.12.1) (AFC1) [Arabidopsis Thaliana] (GB:P51566;GB:Q39184); similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to putative protein kinase (AME2/AFC1) [Oryza sativa (japonica cultivar-group)] (GB:BAD81689.1); similar to Os01g0837900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044742.1); similar to protein kinase (GB:AAA57117.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.257915821435795 3.07120029331051 0.0144543330106281 1 3.99285761985701 14.1002645815960 0.257915821435795 0.0720784235575531
AT3G26300_at 7.15226135831128 7.38336572442882 6.65302489917492 6.61603816990296 7.89034124311958 7.22692213317919 7.89041527143965 7.92509653297013 7.61538391366522 7.98446170589059 7.97355242270597 8.05178762595832 7.91196954334924 7.57391478684533 7.94153174520951 8.1059298404691 7.1985818378313 7.84567744179082 8.3915699806843 0.193557995208636 0.195125818997488 0.192653993051141 0.187925081951152 0.184982639979787 0.195009548140099 0.184080135257386 0.190359605279468 0.210893290136667 0.190808138962077 0.19101468708155 0.187439210165143 0.182428516456592 0.193292417238197 0.195316585911134 0.186977219652459 0.201093896804299 0.186010106339259 0.183640310547780 3 3 - 9640438 9640973 9640682.545 9640436 9642103 - gene protein_coding_gene FALSE TRUE AT3G26300.1 CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B34 (EC 1.14.-.-) (CYP71B34) [Arabidopsis Thaliana] (GB:Q9LIP6); similar to CYP71B35 (cytochrome P450, family 71, subfamily B, polypeptide 35), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26310.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to CYP71B26 (cytochrome P450, family 71, subfamily B, polypeptide 26), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26290.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.331486744168361 -3.07066310899174 0.0144664340631149 1 3.992095068109 15.2534365110325 -0.331486744168361 0.121890564630451
AT3G56680_at 9.92603692077415 9.99194508992665 9.49197354205931 9.369349438062 9.99918732429721 9.7710665093289 9.67762933820734 9.59230249433732 10.0185514942138 9.80959638594834 9.52989932484716 9.80556723706268 9.58800409603088 9.55588069223164 9.85888704457224 9.3836512915689 9.6211591085763 9.1131455944965 9.81656375808766 0.089250182132177 0.0863648740739742 0.0932612261593033 0.0995394075986381 0.0887321818622253 0.0923697927708097 0.089914934643491 0.0884880198425238 0.0923924715495738 0.0878564781176203 0.0903680907227472 0.0872104544437028 0.0863648740739742 0.0914787122047527 0.0904133660718051 0.0863648740739742 0.0944403752210981 0.089267526557624 0.0863648740739742 3 3|0 +|/ 21003526 21004392 21003910.333 21002259 21004656 + gene protein_coding_gene FALSE TRUE AT3G56680.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G40960.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -0.231815252392249 -3.07027654199132 0.0144751487005211 1 3.99154630734263 19.4467337545024 -0.231815252392249 0.0485480282681707
AT4G37470_at 10.6957967511388 10.9570761852504 11.1257601138598 11.1658388956738 11.3603870919801 11.1204777441872 11.2446996343380 11.2527219888914 10.4414395473399 10.7887493826306 11.1478363507308 10.8239240997955 11.3801924114540 11.0755806976757 10.4913569518981 10.8654993158269 10.8647190567764 11.1634116125772 10.6929247855677 0.113763693938279 0.113763693938279 0.119770590825785 0.125912549674877 0.115535930204857 0.125889657873684 0.123128935244340 0.115639110576514 0.139178243702552 0.123545184387119 0.119968328240801 0.117021698983958 0.115657891746207 0.121772340398132 0.119102539131133 0.115509776407516 0.134166700905810 0.127835671457502 0.118069287846520 4 4|0 -|/ 17617070 17618075 17617280.6 17616653 17618452 - gene protein_coding_gene FALSE TRUE AT4G37470.1 hydrolase, alpha/beta fold family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT3G03990.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE87031.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.24553473921651 3.06999582627139 0.0144814804810242 1 3.99114780225005 21.9241462843005 0.24553473921651 0.0617914462139784
AT1G26670_at 10.6063360055915 10.7153660165810 10.8326516930716 10.9809118928196 11.3345179787849 11.1327757553755 10.4811224513782 10.3876157278347 10.9456018936625 10.7936202610502 11.1128929222049 10.5681418893259 10.8253344992577 10.8199343645060 10.4141184042447 10.9162434592455 10.7794045474097 10.9023257817931 10.8078510964592 0.0807701750376123 0.0784780805241471 0.0789143688983221 0.0810953402786767 0.0795230840505908 0.088463138791501 0.0822189929387158 0.0809958855742288 0.087509971482605 0.0803500081127845 0.0792742254463 0.0801731935973796 0.0790964346589306 0.0813430973153438 0.0870643611312524 0.0784780805241471 0.0812185422072091 0.0838454578403247 0.0796660808122048 1 0|1 /|+ 9217029 9217754 9217426.444 9215888 9217990 + gene protein_coding_gene FALSE TRUE AT1G26670.1 VTI12 (VESICAL TRANSPORT V-SNARE 12, vesical transport v-SNARE 12); SNARE binding / receptor member of VTI1 Gene Family. Normally localizes to the transgolgi network and plasma membrane. A dominant mutation (zip1) alters the subcellular localization of VTI12 and suppresses loss of function mutation (zag1) of VTI11. Interacts with members of the SYP family. Identical to Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle transport v-SNARE protein VTI1b) (Vesicle soluble NSF attachment protein receptor VTI1b) (AtVTI1b) (VTI12) [Arabidopsis Thaliana] (GB:Q9SEL5;GB:Q9LQY5); similar to VTI11 (VESICLE TRANSPORT V-SNARE 11, vesicle transport v-SNARE 11), receptor [Arabidopsis thaliana] (TAIR:AT5G39510.1); similar to vesicle transport v-SNARE 11-like [Solanum tuberosum] (GB:ABB29948.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.232939673053862 3.06752354007238 0.0145373694318876 1 3.98763784041811 21.6295741404575 0.232939673053862 0.0499502021566063
AT4G36540_at 9.64105013232665 9.96006061698484 9.11274894328262 9.11660734092256 10.438155405551 10.1269821948080 10.3427998234284 10.3259800620898 10.3810391291545 10.3821822324979 10.5122389134679 10.6152600740380 10.5278103092949 10.3246864503044 10.5052571421159 10.6212447760648 9.80292859427997 10.2970000878029 10.9170577813397 0.0890381586338943 0.087974405460376 0.0964586756529458 0.0922987192671185 0.0897849369241372 0.0962681571662158 0.088174781469512 0.087235405950486 0.096397777693783 0.0869808905279619 0.0871005367754614 0.0862400664837497 0.0858740709616164 0.087943402276099 0.0906817137865315 0.0865895947867338 0.0982653487476358 0.0908422977390065 0.0855495011881783 4 4|0 +|/ 17244228 17244931 17244656.6 17243586 17245299 + gene protein_coding_gene FALSE TRUE AT4G36540.1|AT4G36540.2 BEE2 (BR ENHANCED EXPRESSION 2); DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G18300.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G18300.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.264069470904666 -3.06665146756125 0.0145571370927166 1 3.98639961277095 20.3634962354668 -0.264069470904666 0.0771781598956435
AT1G10090_at 7.47545089898555 7.7282071566633 7.11532630596115 6.90710816008984 7.69018579705863 7.23924616804628 7.34121259840766 7.16295820071851 5.58633525007582 5.84208006448185 6.401521567207 6.76004865544679 6.7953964876597 6.60675117005807 6.03543167479818 6.57622168605268 6.35589771659843 6.34639818705153 5.66984460976631 0.164877880245405 0.16437448412007 0.166847862868919 0.161457666456229 0.165081653787514 0.165069591146330 0.164680883322421 0.167427529052704 0.171359022786617 0.163042298932680 0.162253706748102 0.160891667562180 0.161843840185254 0.165535767438961 0.166267489280695 0.160984706466813 0.167494313165300 0.167910506724800 0.16458105259175 1 1|0 -|/ 3290590 3295071 3292841.857 3290313 3296200 - gene protein_coding_gene FALSE TRUE AT1G10090.1 similar to RXW8 [Arabidopsis thaliana] (TAIR:AT1G58520.1); similar to Os12g0633600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067352.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os03g0673800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050880.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.298148906214807 3.0652257491531 0.0145895146681524 1 3.98437513985583 13.4245260946832 0.298148906214807 0.101257195806650
AT4G20010_at 8.1908468204027 8.27791982180192 8.2510229934997 8.4370311367221 8.3857984593851 7.98289808695789 8.77391973149497 8.33812600088703 8.22741105977282 8.32081516826908 7.68791889741968 7.57168305586229 7.83300319447708 7.82409953534078 7.8416606686013 8.1941984978227 8.25847758682589 7.67581372945085 8.49847659694774 0.111631478890777 0.109243555438545 0.119467701876393 0.112120986770392 0.113252242750787 0.123046014583904 0.116651260532607 0.115475050995805 0.127638371464104 0.111105725775932 0.110165768013582 0.112822685083415 0.113217526422273 0.111500822934184 0.115774402558944 0.110621880528353 0.117364265514189 0.125917757142844 0.113626857339717 4 4|0 +|/ 10842946 10843931 10843490.2 10841993 10844134 + gene protein_coding_gene FALSE TRUE AT4G20010.1|AT4G20010.2 PTAC9 (PLASTID TRANSCRIPTIONALLY ACTIVE9); single-stranded DNA binding similar to single-stranded DNA binding [Arabidopsis thaliana] (TAIR:AT5G44785.1); similar to mitochondrial SBP40 [Solanum tuberosum] (GB:AAX34397.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Single-stranded DNA binding; (InterPro:IPR010913); contains InterPro domain Single-strand binding protein/Primosomal replication protein n; (InterPro:IPR000424) -0.309529735221798 -3.06425399099776 0.0146116258316016 1 3.98299517516732 16.4345743000881 -0.309529735221798 0.108684063590421
AT4G27830_at 9.10653140320379 9.08758875849804 9.95356237440703 10.0540738524158 9.52671023426966 8.87151029121388 9.67061043962642 9.46525306313302 7.97398980978146 8.4562891903624 8.1653416006922 8.24327941832319 8.50994349212437 8.76387405349529 7.90110511796337 9.07222070351658 9.12251698683208 8.57789634069032 8.0441310046577 0.141320877868404 0.143543375827899 0.144379426559813 0.140662200175399 0.140267090216720 0.139495830121700 0.141139780856748 0.145170129391826 0.150965126220358 0.136085325335288 0.141276672007131 0.137540274697438 0.143779881279992 0.140535706958031 0.142062984327923 0.138409810029057 0.145763650011205 0.13981152778025 0.135440016949130 4 4|0 -|/ 13861809 13862682 13862279.125 13861724 13864506 - gene protein_coding_gene FALSE TRUE AT4G27830.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27820.1); similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G62750.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G62740.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.327676908949377 3.06206630224116 0.0146615315052096 1 3.97988820706365 17.8183094933319 0.327676908949377 0.120135340153908
AT3G45630_at 5.96899559994587 5.92489052294703 6.51786062484808 6.0375106173031 6.89586553532289 6.55985578206072 6.62595770878178 5.8628893582864 5.48565413730531 5.25140373040401 5.18237098191867 5.78646359059359 6.01898948213873 5.76004609739511 5.67120394340265 5.93265853849061 5.72877000358725 5.74776271433136 5.21962657844343 0.215327286292638 0.217969355205072 0.212398804587938 0.224460788370717 0.211386532946698 0.207708276770730 0.212676158469378 0.208378727488217 0.212802434142447 0.212260994178741 0.20853360494641 0.216690972194285 0.208988027431631 0.208734262740923 0.215020002244892 0.213790296804489 0.235626585269633 0.208950201028537 0.212737651371321 3 3 - 16759754 16760304 16760002.182 16759159 16764818 - gene protein_coding_gene FALSE TRUE AT3G45630.1 RNA recognition motif (RRM)-containing protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G60170.1); similar to nucleic acid binding / nucleotide binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G28540.2); similar to RNA-binding re (GB:ABE87889.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.408364097995712 3.05982651079030 0.0147128092188367 1 3.97670681805431 11.8229422108702 0.408364097995712 0.166695505587321
AT3G56040_at 7.68617624787432 7.45762135382809 7.24478557023106 6.68681362665395 7.71124610269188 7.11091708731848 8.62669840887459 8.009096580757 8.30468923233922 8.69096235921518 8.47929675715043 8.8996279688672 8.09712444186608 8.52604661526044 8.39109747465159 8.69242567975648 8.12582697911077 8.13485726673883 8.60813145950407 0.142110498657093 0.138175074310698 0.15227831427581 0.151281972170855 0.138819872515408 0.144160577907887 0.138024609625066 0.138961091143756 0.136742785584979 0.137497734080990 0.140794847080004 0.141108838912036 0.137650401398782 0.140207406942006 0.146708724462225 0.141039152040199 0.152441017715495 0.141046440678887 0.138141241870720 3 3 - 20803692 20804635 20804113.909 20803456 20808551 - gene protein_coding_gene FALSE TRUE AT3G56040.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47007.1); similar to Os05g0468600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055800.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448) -0.436382001768626 -3.05951400332971 0.0147199785496877 1 3.97626289992503 16.0431104964177 -0.436382001768626 0.181945971285651
AT2G43970_at 10.9768827472155 11.0072392112837 10.9852346489548 10.9038970434219 10.7416129056609 10.5481938670815 10.6014963129054 10.4771682761911 11.3365216506472 11.1812454825262 10.7947907566220 10.7681000748710 10.6145809134635 10.7146386634775 10.4355840961766 10.7795058643046 10.8601255620517 10.7949742734693 11.0836513769830 0.0853265542690035 0.0853265542690035 0.0853265542690035 0.0883625752420097 0.0878829652795872 0.0915992682869658 0.0924521341398834 0.0901950082074701 0.0952703108432954 0.0884479873681554 0.090863482157569 0.0853265542690035 0.0853265542690035 0.087610500131917 0.088648657840178 0.0853265542690035 0.0898834159879052 0.089079862375635 0.0872961498132694 2 2|0 -|/ 18212617 18213515 18212918.4 18212311 18215294 - gene protein_coding_gene FALSE TRUE AT2G43970.1|AT2G43970.2 La domain-containing protein similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96797.2); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Lupus La protein; (InterPro:IPR002344)|similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G19090.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96797.2); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Lupus La protein; (InterPro:IPR002344) -0.225573665891720 -3.05842153030573 0.0147450698410159 1 3.97471097216379 21.7405958077260 -0.225573665891720 0.0425326351752612
AT4G05000_at 6.8387502273017 7.60791282194204 7.12870264173787 7.08211374804471 7.66310868529745 7.52236265624886 6.42272754958431 7.12088639322451 4.56147102576642 5.6870308380293 5.53548466310826 5.97851488923266 6.47809517950966 5.94203654886351 5.20218596304917 5.79999202428749 5.85207529702269 5.78433473435664 5.65747405131311 0.275313122549192 0.264572992968021 0.271392874155957 0.267241661008581 0.267281571256423 0.275334152330898 0.272344414095994 0.273919416298459 0.305090484826088 0.274672143750814 0.278396903473811 0.264572992968021 0.27299163394298 0.285010825155192 0.283468484113586 0.270417493695789 0.289950846420205 0.274422132704825 0.265619338450828 4 4 + 2564063 2564542 2564275.455 2563042 2564738 + gene protein_coding_gene FALSE TRUE AT4G05000.1|AT4G05000.2 vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein Identical to Vacuolar protein sorting-associated protein 28 homolog 1 [Arabidopsis Thaliana] (GB:Q9S9T7); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G21560.3); similar to hypothetical protein DDBDRAFT_0186436 [Dictyostelium discoideum AX4] (GB:XP_638318.1); similar to Os01g0781000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044441.1); contains InterPro domain Vacuolar protein sorting-associated, VPS28; (InterPro:IPR007143) 0.435550312772453 3.05838233431268 0.0147459708970862 1 3.97465528986335 12.7351115324885 0.435550312772453 0.181585132934116
AT3G45850_at 5.62439132727682 6.32636682738042 4.24830675314401 4.35903675266726 5.27737984898619 4.86788591226268 5.56979556617659 5.48946561567255 6.66592505344369 6.53147305707693 7.52250081177246 7.4979606421883 6.51012081669846 7.0478184190173 7.75041723797541 6.76863817721283 6.18365508683523 7.1189033101147 6.94952768935764 0.217098347950891 0.206401559102430 0.210268396236007 0.241688718536561 0.215540105469449 0.221594823581154 0.206401559102430 0.211624774397640 0.229513098145997 0.206401559102430 0.206401559102430 0.21570154301246 0.209780078599018 0.207344911015838 0.207677877045069 0.206704542196153 0.214276394669006 0.211779379917548 0.209656267090995 3 3|0 -|/ 16866822 16867599 16867172.1 16866597 16871935 - gene protein_coding_gene FALSE TRUE AT3G45850.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G36200.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G37420.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G28620.1); similar to Kinesin, motor re (GB:ABD32308.1); similar to putative kinesin [Oryza sativa (japonica cultivar-group)] (GB:AAV44208.1); similar to KRP120-2 [Daucus carota] (GB:AAK91129.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.364996318963740 -3.05602650207407 0.0148002330362158 1 3.97130832666562 12.1031504484556 -0.364996318963740 0.142617299931515
AT1G45230_at 6.23335853298535 6.42471570718489 5.63519125922947 5.94067786177162 6.26673464751909 6.15305375190787 6.41965573581744 7.21672731546774 5.89217191582725 5.83637209866138 5.266356942969 5.35231910547737 6.00684436375569 5.84067724531021 5.51426869635767 5.66473797944231 5.78828238440063 5.63383001024531 5.74258997502203 0.196249287173450 0.189471222318960 0.197818009415365 0.192188046622012 0.188169705381031 0.19264328659431 0.190603091575810 0.190552672524405 0.189459850534504 0.188169705381031 0.1959321047883 0.190716909699615 0.188169705381031 0.191092621874511 0.191584875959192 0.190610357219696 0.190076200560006 0.192181532246283 0.190634378359672 1 1 - 17172333 17173704 17173238.273 17171977 17173912 - gene protein_coding_gene FALSE TRUE AT1G45230.1|AT1G45230.2 defective chloroplasts and leaves protein-related / DCL protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G46630.1); similar to DCL protein, chloroplast precursor (Defective chloroplasts and leaves protein) (GB:Q42463) -0.382498340799479 -3.05491695176662 0.0148258612223022 1 3.96973181044701 12.0148273119013 -0.382498340799479 0.152659922447989
AT2G01270_at 8.58507455157286 8.47504244042815 8.34894112433102 8.46248529134747 8.60580174428634 8.41744232465424 8.45828512026149 8.21951697979875 8.49304861779772 8.49459108474883 7.86911827497498 7.86004780151033 7.97460610239292 8.02153274004782 8.05539971288309 7.81163020835736 8.32424496633088 8.0352557354755 8.5144279036962 0.128270096188029 0.134638117566209 0.140823942317148 0.135354327630212 0.127662096786514 0.133893236601606 0.128683010540146 0.132406492379863 0.149843722312643 0.129953469978831 0.128477958875742 0.131668795377179 0.132633640082298 0.13216715422303 0.137549134991370 0.128094903722555 0.127400682192641 0.128581928262756 0.135436705662183 2 2 + 141384 141988 141780.091 139330 142559 + gene protein_coding_gene FALSE TRUE AT2G01270.1 ATQSOX2 (QUIESCIN-SULFHYDRYL OXIDASE 2); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the quiescin-sulfhydryl oxidase (QSOX) family, which possess an Erv1-like domain at the COOH terminus in addition to a TRX domain. similar to ATQSOX1 (QUIESCIN-SULFHYDRYL OXIDASE 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G15020.2); similar to Thioredoxin domain 2; Erv1/Alr [Medicago truncatula] (GB:ABE92220.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Erv1/Alr; (InterPro:IPR006863) -0.241260955597427 -3.0507800153709 0.0149218223538737 1 3.96385288581284 16.6939080194988 -0.241260955597427 0.0593173327615322
AT1G13195_at 5.81780893051259 6.45660707105091 6.12107840364743 6.52345280806513 6.80659128521742 6.55456978268817 6.06421206710083 5.7088709352251 4.19408981554733 5.5413928882903 5.09546858778846 5.17338764128043 5.09560446836628 5.46684100580808 4.89895865105812 5.82448266608065 5.87435697677556 5.05005091407836 5.39068251896158 0.211255903160522 0.209411084519006 0.219985016161357 0.219660369746177 0.209411084519006 0.213864667895829 0.216213151126339 0.218017284466056 0.222082699889653 0.212787057947644 0.210079602653157 0.212813466389109 0.217959027712841 0.213681034389147 0.231612201243805 0.212824020229813 0.223595373416956 0.209411084519006 0.225003637072593 1 1|0 -|/ 4501795 4502716 4502152.7 4501579 4503588 - gene protein_coding_gene FALSE TRUE AT1G13195.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G24440.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE84624.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.378693554285136 3.05021639063705 0.0149349461277436 1 3.96305181771704 11.4326233795239 0.378693554285136 0.150840780859476
AT1G20650_at 9.77176662776393 9.81785699562742 9.6411867482121 9.5400470354019 10.3482939256529 10.1000844459858 10.4720730761056 10.3668456212708 10.1654405206692 10.5900110914339 10.3535762037101 10.3935155189886 10.4550582619427 10.2375300852528 10.1212148823942 10.2361780005987 9.85767923397634 10.0496250703219 10.6771317683866 0.0721537057003651 0.0677715175369308 0.0707751342794474 0.0681678896458424 0.0667113060551174 0.0784369381563112 0.0667113060551174 0.0714442997899182 0.0761678403625438 0.069185829176021 0.0716253011797914 0.0670999396286297 0.067434248971499 0.0679941322215895 0.0708419304402654 0.0667113060551174 0.0732337121122789 0.07019748852166 0.0709647825507985 1 1|0 -|/ 7158413 7159048 7158644.5 7158234 7160516 - gene protein_coding_gene FALSE TRUE AT1G20650.1 protein kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G76370.1); similar to putative serine/threonine protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT58829.1); similar to Os01g0936100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045326.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.232106588863562 -3.0500636554183 0.0149385045689206 1 3.96283473374909 20.3525567848249 -0.232106588863562 0.0504638576187716
AT3G27350_at 7.00960867663398 7.3103250242237 7.33144964289661 7.57876259136164 7.55697521199684 7.3542518144937 9.02728678023395 8.79239151521702 6.44082349565833 7.71259498550833 7.02556292525188 7.10444309454237 7.5424352572484 7.21340953250168 6.65429649342131 8.30725165181832 8.15769465247159 7.04532319973593 7.9002498610462 0.156899036138211 0.156062216563936 0.158752284343397 0.159851536804306 0.160517534536316 0.159552259782721 0.171536092971581 0.166858230954253 0.176354988784397 0.158995721476368 0.163578131245906 0.15508290003046 0.160449182732741 0.158984963590059 0.165433299933135 0.157823610975016 0.170782941346470 0.165907522461265 0.156274490403301 3 3|0 +|/ 10128007 10128790 10128262.556 10127258 10129192 + gene protein_coding_gene FALSE TRUE AT3G27350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40700.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE84619.1) -0.274731931876821 -3.05005692422779 0.0149386614131556 1 3.96282516660131 15.1113938479380 -0.274731931876821 0.0861573421751093
AT1G72190_at 7.08569198824761 6.78416964734832 6.55330881124146 6.56971811507139 7.40921413110118 6.76996662090445 6.85609009220716 6.56549093681697 5.65881967879797 5.88932411732296 4.8251067374965 5.07208990101425 5.57271163470129 5.49929203260213 4.53998207647572 5.26950966127359 5.42689814238119 5.02384407969595 6.00010742683177 0.243473440227240 0.238015638616055 0.243028090692349 0.236289369005771 0.238353756709813 0.245998737547845 0.239159543306913 0.236298984951188 0.257526162297506 0.238638987804751 0.239063567595225 0.233059360975561 0.243001240440406 0.240840140157482 0.247863009943543 0.238025643254790 0.240912027445549 0.235169156465562 0.243224301409476 1 1|0 -|/ 27171315 27172185 27171603.556 27171025 27173379 - gene protein_coding_gene FALSE TRUE AT1G72190.1 oxidoreductase family protein similar to FDH (FORMATE DEHYDROGENASE), NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor [Arabidopsis thaliana] (TAIR:AT5G14780.1); similar to Os07g0264100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059330.1); similar to phosphoglycerate dehydrogenase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31969.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.346523268843941 -3.04963885239206 0.0149484063041752 1 3.96223094704162 12.3257544716286 -0.346523268843941 0.132278782615164
AT1G80760_at 6.64101178213287 7.06274991076847 8.0808797882225 8.34894604166512 7.6053263612631 7.86106121399613 9.5793409122789 9.54463355922933 8.08896855817799 8.90591211628437 9.5935370985986 8.66596403392699 9.65447934626397 9.48410423062818 8.2528333107678 9.2640881984667 9.59848729772632 9.84914178135201 8.44825806976236 0.153885731980233 0.144130481259448 0.144683745057477 0.139002136625858 0.14263845896056 0.145865396159710 0.143474023951011 0.148343627038088 0.150595197368188 0.144313351802494 0.140794786277671 0.140766405995168 0.141145598695569 0.14601700845069 0.149785010495127 0.143210042094969 0.139916242686161 0.142160158009329 0.145010145790988 1 1|0 -|/ 30355630 30356462 30356027.667 30355431 30357100 - gene protein_coding_gene FALSE TRUE AT1G80760.1 NIP6;1 (NOD26-like intrinsic protein 6;1); water channel Similar to gb:D17443 major intrinsic protein from Oryza sativa Identical to Aquaporin NIP6.1 (NOD26-like intrinsic protein 6.1) (NIP6.1) [Arabidopsis Thaliana] (GB:Q9SAI4;GB:Q5PP68); similar to NIP5,1/NLM6/NLM8 (NOD26-like intrinsic protein 5,1), boron transporter/ water channel [Arabidopsis thaliana] (TAIR:AT4G10380.1); similar to nodulin 26-like protein [Medicago truncatula] (GB:AAT35231.1); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.290701237162868 3.04908754656030 0.0149612668549382 1 3.96144733517158 16.9786815263402 0.290701237162868 0.0973311308344902
AT1G73600_at 12.1876512146060 12.3281123525256 13.0295102155268 12.9614161890233 12.8497905100764 12.5474177281378 13.5862885100275 13.4251599249214 12.3131331299350 13.4813365632059 13.4730672598355 13.4679047315915 13.6849072331482 13.5084566522868 12.9563108213817 13.7749638549757 13.6960786884444 13.5241268660843 13.1480593545675 0.0713017753579031 0.070352548077172 0.067856406810697 0.068206592866002 0.0674675448711642 0.0730340832120382 0.070972607480149 0.0709998996260073 0.0759160667110394 0.0679840767822861 0.0681531044500343 0.067134553983635 0.0725666914186985 0.0690162107109487 0.0694313600190792 0.067134553983635 0.0771866297021015 0.068799384143459 0.0677307394277445 1 1 + 27676220 27677028 27676460.545 27672813 27677233 + gene protein_coding_gene FALSE TRUE AT1G73600.1|AT1G73600.2 phosphoethanolamine N-methyltransferase 3, putative (NMT3) Identical to Putative phosphoethanolamine N-methyltransferase 3 (EC 2.1.1.103) (NMT3) [Arabidopsis Thaliana] (GB:Q9C6B9;GB:Q9C9V1); similar to NMT1 (N-METHYLTRANSFERASE 1), phosphoethanolamine N-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G18000.1); similar to phosphoethanolamine N-methyltransferase 2, putative (NMT2) [Arabidopsis thaliana] (TAIR:AT1G48600.2); similar to phosphoethanolamine N-methyltransferase [Aster tripolium] (GB:BAC57960.1); similar to Putative phosphoethanolamine N-methyltransferase 3 (GB:Q9C6B9); similar to phosphoethanolamine N-methyltransferase [Brassica napus] (GB:AAP83582.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.247557328868323 3.04720882265207 0.0150051790024290 1 3.95877677493552 26.1102033452912 0.247557328868323 0.0651563674245012
AT1G17970_at 4.20098023098755 4.62343226714158 4.06476243014849 3.79492825628418 5.2515449717816 4.53994297369332 5.5207380780622 5.16928013849458 4.83679811594334 4.90076551450763 6.26691952997583 6.33733647544968 6.60975796117186 6.77384757889873 6.1113398008662 5.9769769711564 5.78353122013562 4.74761475210353 4.70117841132136 0.245088192849285 0.232961982589380 0.246762534107334 0.238472785582240 0.234983129843488 0.245032486325702 0.233673925800950 0.235398931003350 0.233177441500787 0.233668265880313 0.231614356034515 0.234651994429833 0.232060831664340 0.238656688812024 0.230647133372888 0.233127626542046 0.233935609566179 0.230809097965126 0.235900118147664 1 1|0 +|/ 6185543 6187106 6186397.75 6184897 6187465 + gene protein_coding_gene FALSE TRUE AT1G17970.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G73760.1); similar to RING-H2 finger protein RHG1a-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82497.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.398594250800521 3.04405536515622 0.0150791870155911 1 3.9542935518043 10.0901159433961 0.398594250800521 0.162448127528826
ATMG00660_at 6.14406094537364 6.8408364272436 6.79599660468645 5.95867918476936 6.15429191794633 5.77473324457273 5.88789496526528 6.59611460455321 7.47147487501304 7.62736848653368 6.80195151119156 7.89689394759242 7.23230112514455 6.66546843011482 4.94648485257069 6.71456272414145 6.7283493453007 6.02238697502999 7.38968691543447 0.269691810336249 0.280788575323818 0.266611444240282 0.27613992203306 0.266611444240282 0.277679365441806 0.289076947970056 0.292575955167119 0.281936991200549 0.268140526235545 0.282519035964534 0.301099847662146 0.280514789341626 0.286142141364526 0.289133055611750 0.266611444240282 0.273405825900294 0.274371160655191 0.269670094874348 M M - 190106 190516 190306.091 190104 190553 - gene protein_coding_gene FALSE TRUE ATMG00660.1 Identical to Hypothetical mitochondrial protein AtMg00660 (ORF149) [Arabidopsis Thaliana] (GB:P93318); similar to unknown [Brassica napus] (GB:AAB41356.1) -0.533214196361587 -3.04272058973143 0.0151106266928097 1 3.95239567341389 13.3301892982411 -0.533214196361587 0.234247011415572
AT2G46420_at 6.32418666485459 6.66521535829343 7.08783655461064 7.37306260571912 7.15610618518726 6.8484987177385 6.07306728881716 6.20072712535141 5.72888834127285 5.07823495020049 5.24243001428626 5.10074525382845 4.7063439577651 5.5443748081877 4.67901503658799 5.06792322172582 5.15748911246595 5.17675739311375 5.11797997818578 0.205936164552118 0.208280354550267 0.210728756100898 0.210085530124650 0.206553280489971 0.212954456550032 0.204494378962898 0.210640856687991 0.212952164451891 0.206610903115636 0.206670855963518 0.206611530454110 0.208644892520755 0.208178061161698 0.208891009077509 0.207762759484231 0.211423374976266 0.219362974241895 0.204494378962898 2 2 + 19062976 19063866 19063386.364 19060759 19064169 + gene protein_coding_gene FALSE TRUE AT2G46420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G61700.1); similar to uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum] (GB:AAU93592.2); contains InterPro domain Conserved hypothetical protein 1589, plant; (InterPro:IPR006476) 0.288296999838412 3.04243342298251 0.0151173995886255 1 3.95198734011755 11.9124638657206 0.288296999838412 0.0961308700736348
AT3G62120_at 9.65821870908221 9.82125699889423 9.30401012342274 9.37578118343017 9.55610296397862 9.49993567856953 9.54895001242118 9.47795894745678 9.59908066240002 9.53581949266606 9.42824031840159 9.6253615438401 9.27938505212293 9.28127793410137 9.52025039343146 9.1683860403605 8.86648843731855 9.29754234658401 9.52184856889767 0.128056170128874 0.122306547454231 0.130036654692233 0.120815324094259 0.122453492003178 0.124844129739093 0.124073141180468 0.122549202890870 0.134362380489407 0.124355771197683 0.122811907875379 0.123231492378189 0.126180821468415 0.125565448147042 0.122992544111273 0.122085928414038 0.128804507657369 0.121525245908298 0.123709068424543 3 3|0 -|/ 23012372 23013071 23012795.4 23012005 23015296 - gene protein_coding_gene FALSE TRUE AT3G62120.1|AT3G62120.2 tRNA synthetase class II (G, H, P and S) family protein similar to OVA6 (OVULE ABORTION 6), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G52520.1); similar to Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97739.1); similar to Bifunctional aminoacyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97740.1); similar to tRNA synthetase, class II (G, H, P and S) [Medicago truncatula] (GB:ABE81883.1); contains InterPro domain Prolyl-tRNA synthetase, archael and euk type; (InterPro:IPR004499); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Prolyl-tRNA synthetase, class IIa; (InterPro:IPR002316); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.218260872998925 -3.04206470436472 0.0151261005250406 1 3.95146303514708 18.9605848686193 -0.218260872998925 0.0345793636875539
AT3G07565_at 7.30109287196974 7.52973487610395 7.29639554919434 7.63520862854735 8.09760305058587 7.75267196612096 6.96027801792123 7.17418428809282 6.11076727052083 6.42033580370981 6.27437446104813 6.49041521835482 6.48279893087932 6.53040683448025 6.52511530139084 6.52772882000323 6.41173292294437 6.39772339729217 6.43529928765577 0.24684092392849 0.248320737350398 0.245498040190690 0.248056649502785 0.253387198581606 0.244862646389125 0.241705148972152 0.243007037489500 0.261813849424654 0.244717435769954 0.248283317320772 0.241705148972152 0.242664264056222 0.261211038634369 0.245970366092161 0.241907018435835 0.254464036210649 0.248598116004268 0.241705148972152 3 3|0 +|/ 2414011 2415850 2415110.3 2413648 2416283 + gene protein_coding_gene FALSE TRUE AT3G07565.1|AT3G07565.2|AT3G07565.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to OSJNBa0067K08.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03109.1); similar to Os05g0305700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055150.1); similar to H0322F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67770.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26476.1); similar to OSJNBa0067K08.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03109.1); similar to Os05g0305700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055150.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.293525075130267 3.04199106300591 0.0151278389193763 1 3.95135831836871 13.856981709281 0.293525075130267 0.0996838147673895
AT2G36360_at 7.61423578644632 7.38566955462696 7.28859323296487 7.3397199999044 7.29242075512421 7.12751791482546 6.10190299620702 6.43947426380984 6.38665254708352 5.61578253280199 5.76922974873472 5.80517384532568 5.92551601142663 5.96174859386387 6.40450174780839 5.69862207378157 5.83267076548927 6.36629343446681 5.47207622532467 0.203242623694750 0.194375689536925 0.201160725284057 0.202225140319646 0.196451324715841 0.204877934026187 0.196210015615352 0.212433855799223 0.206517987506078 0.202997434426298 0.195246937144383 0.199104442418383 0.198089755087587 0.200816068658991 0.194375689536925 0.215706164119475 0.208042726480471 0.199975641038051 0.197897199633295 2 2|0 -|/ 15251224 15252192 15251658.7 15249983 15254694 - gene protein_coding_gene FALSE TRUE AT2G36360.1|AT2G36360.2 kelch repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74150.1); similar to Os03g0835800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051820.1); similar to Kelch motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99751.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.261187375653797 3.04164858693684 0.0151359262108192 1 3.95087131726283 12.9713451276631 0.261187375653797 0.0766153036426599
AT1G50170_at 8.53689309919379 8.30958430531927 8.24083636817035 8.06540521568455 8.24768055149507 7.87027533319773 8.80155138947175 8.70946009026311 7.99699936020386 8.15896454551177 7.90367813674328 8.03593613180016 7.9272814144283 8.05794275316844 8.0021402256267 8.00113697189713 8.10171388506477 8.18551557647514 8.0970319247211 0.120943212217036 0.113843167678696 0.122727262844316 0.118615002517959 0.115892687999481 0.122909602244832 0.119937416969806 0.117808406659086 0.121509061214394 0.117548148117483 0.113408278981852 0.113376713744600 0.120152065040918 0.121103572891536 0.117694607619932 0.114581558365661 0.126168406858275 0.115101669433392 0.115322206191938 1 1|0 +|/ 18585968 18587126 18586508.667 18585692 18587392 + gene protein_coding_gene FALSE TRUE AT1G50170.1 sirohydrochlorin ferrochelatase similar to Cobalamin (vitamin B12) biosynthesis CbiX protein [Medicago truncatula] (GB:ABE87912.1); contains InterPro domain Cobalamin (vitamin B12) biosynthesis CbiX; (InterPro:IPR002762) -0.270368330251734 -3.04062922463647 0.0151600241806177 1 3.94942172650279 16.4033358342892 -0.270368330251734 0.0835982791929794
AT3G26090_at 7.30186570642078 7.34535221150458 6.87585454133048 6.7783601398145 6.98188597415548 6.25880151522119 4.80729855723182 5.38051185872391 4.91105192634527 4.76548382285267 4.89778664933508 5.16511573112208 4.55924156214263 5.58495316092947 4.44187085034355 5.4946846525507 5.11601428635158 4.91454519947001 4.56388461310093 0.262199362242929 0.254785454332551 0.267422941214101 0.258027611659664 0.254406409876347 0.273710713531366 0.254406409876347 0.257195957041136 0.263681057152603 0.255282459137708 0.257502721519899 0.254406409876347 0.257602876405535 0.256531526599950 0.260000417093774 0.254406409876347 0.255634490647075 0.268329543399596 0.254406409876347 3 0|3 /|+ 9536266 9536623 9536472.1 9533985 9536866 + gene protein_coding_gene FALSE TRUE AT3G26090.1 RGS1 (REGULATOR OF G-PROTEIN SIGNALING 1); signal transducer encodes a regulator of G-protein signaling protein. Lines over-expressing the gene are more tolerant to dehydration and root elongation. These phenotypes are dependent on ABA. similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84627.1); contains InterPro domain Regulator of G protein signalling; (InterPro:IPR000342) 0.39496909162891 3.03966478031193 0.0151828605358053 1 3.94805015353659 11.3505329625321 0.39496909162891 0.160747277301882
AT2G32640_at 5.86784118804652 5.31162983422539 4.83041090934208 4.84796071160135 5.46183616228924 5.50268318978747 7.50805538171148 6.42376525519549 5.40547019664503 6.79738834082799 5.92312361975573 6.62553308954366 5.6593017838515 5.94178117977852 6.920254653307 6.5088577860993 6.71501411693575 5.90573667387524 6.19761911513948 0.214930922352196 0.212262130843837 0.209626968041219 0.219814384177528 0.212622846796194 0.215429354534457 0.212389530061734 0.209926139920865 0.224609109226776 0.221964670896258 0.218113405302640 0.209626968041219 0.223393298131220 0.21025627957649 0.216056097246987 0.214542765151587 0.209626968041219 0.219955967649982 0.221457825391633 2 2 - 13854301 13855543 13855037.6 13853996 13857986 - gene protein_coding_gene FALSE TRUE AT2G32640.1|AT2G32640.2 similar to Os08g0422000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061825.1); similar to hypothetical protein Npun02004577 [Nostoc punctiforme PCC 73102] (GB:ZP_00108170.1); contains domain no description (G3D.3.50.50.60); contains domain FAD/NAD(P)-binding domain (SSF51905)|similar to Glycine/D-amino acid oxidases-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL50078.1); similar to Os08g0422000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061825.1); contains domain no description (G3D.3.50.50.60); contains domain FAD/NAD(P)-binding domain (SSF51905) -0.487821179758591 -3.03783088603405 0.0152263824802354 1 3.94544189222126 11.9234942859070 -0.487821179758591 0.211029687717175
AT2G03530_at 6.61584772834986 7.31840315264851 6.8696928383125 6.93646489809071 7.98754346823555 7.1729141128033 5.11149072571841 4.97852332886191 6.00813851479809 6.45288318288896 6.36352681568594 6.71611040070695 6.53738611714327 6.25767000400702 5.50601641160753 6.43656440229445 5.76591812062496 5.3985729006265 6.94789242111658 0.222557144057368 0.227989320796522 0.228052358714951 0.214407467043994 0.225438813454055 0.230917018255795 0.225273140616236 0.227708960386068 0.229630380375284 0.221086883764359 0.217156581877062 0.218678710076666 0.213769863375622 0.220594427418295 0.229981374936192 0.215386666504863 0.241877682574273 0.227543573933062 0.213769863375622 2 2 + 1072938 1073476 1073210.455 1071591 1073563 + gene protein_coding_gene FALSE TRUE AT2G03530.1|AT2G03530.2 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. Identical to Ureide permease 2 (AtUPS2) (UPS2) [Arabidopsis Thaliana] (GB:Q9ZQ89); similar to ATUPS1 (Arabidopsis thaliana ureide permease 1), allantoin transporter [Arabidopsis thaliana] (TAIR:AT2G03590.1); similar to Ureide permease 2 (AtUPS2) (GB:Q9ZQ89); contains InterPro domain Fatty acid elongase 3-ketoacyl-CoA synthase 1; (InterPro:IPR009834) 0.444335101225855 3.03753356724027 0.0152334506312356 1 3.94501900378887 12.9200393747217 0.444335101225855 0.187933217559278
AT2G38020_at 7.66261619221975 7.96096207445772 7.69556879061476 7.88522752677071 8.25835540561483 7.88554239921378 7.65062426096555 7.30240908591065 6.48786007261742 7.4146846056401 7.47134985709437 7.55574096478203 7.51241064728162 7.31990974633554 7.13855474410068 7.63685380092213 7.2418229722746 7.29940714879345 7.32062616310455 0.218486752131478 0.213954702045345 0.213966863793992 0.215373214848827 0.220143668569541 0.221008909335480 0.231473500590835 0.221780419875880 0.247256122704161 0.217708962556015 0.224497152407524 0.218394616408533 0.213954702045345 0.234394928723745 0.220551003284475 0.213954702045345 0.232523991183923 0.229522122949463 0.213954702045345 2 2|0 -|/ 15917189 15918126 15917711.444 15916986 15921788 - gene protein_coding_gene FALSE TRUE AT2G38020.1|AT2G38020.2 VCL1 (VACUOLELESS 1) necessary for proper vacuole formation and morphogenesis in Arabidopsis similar to Os01g0666800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043804.1); similar to vacuolar protein sorting-associated protein VPS16-like [Oryza sativa (japonica cultivar-group)] (GB:BAB90498.1); contains InterPro domain Vps16, N-terminal; (InterPro:IPR006926); contains InterPro domain Vps16, C-terminal; (InterPro:IPR006925)|similar to Os01g0666800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043804.1); similar to vacuolar protein sorting-associated protein VPS16-like [Oryza sativa (japonica cultivar-group)] (GB:BAB90498.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Vps16, N-terminal; (InterPro:IPR006926); contains InterPro domain Vps16, C-terminal; (InterPro:IPR006925) 0.304818290954563 3.03720685312925 0.0152412215227433 1 3.94455429688652 15.023361474797 0.304818290954563 0.107408834242778
AT1G21250_at 11.8543881652953 11.9627987378786 12.4057102784235 12.3828063212778 11.2743608853052 11.0229103452475 10.7691599868755 10.7503524038035 11.3373162520005 10.2191708885567 10.6234261932506 10.7138963626611 10.0947537488419 10.9015114771851 9.77457102634474 10.4679157558099 10.5065413979416 11.3014104708178 10.0287407964240 0.0811971651204352 0.0809650361729732 0.081392378925613 0.0844518029094647 0.0820664152295764 0.0831492414978073 0.0837728621636003 0.0803380589033144 0.0858497572289555 0.0852090737782103 0.0821563787014423 0.0839943642588473 0.0850724154085026 0.0863116662944245 0.0836930461890666 0.0820647520752471 0.090852654149363 0.0877474937007367 0.0808602135158944 1 1 + 7441363 7441586 7441521.818 7439255 7442082 + gene protein_coding_gene FALSE TRUE AT1G21250.1 WAK1 (CELL WALL-ASSOCIATED KINASE); kinase cell wall-associated kinase, may function as a signaling receptor of extracellular matrix component. Identical to Wall-associated receptor kinase 1 precursor (EC 2.7.11.-) (WAK1) [Arabidopsis Thaliana] (GB:Q39191;GB:O81820;GB:Q56WT2;GB:Q9LMP0); similar to WAK3 (WALL ASSOCIATED KINASE 3), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21240.1); similar to WAK2 (wall-associated kinase 2), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21270.1); similar to WAK5 (WALL ASSOCIATED KINASE 5), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21230.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.228433062939914 3.03629391126674 0.0152629576489141 1 3.94325571360744 22.0910171987302 0.228433062939914 0.047663458933877
AT3G15180_at 5.50004702214827 5.50150249961426 6.29223219986897 6.01144281207002 5.77606986777406 5.34833325716239 6.05821629834558 5.93347181107417 5.08335014561588 5.32583907033922 4.35186028131828 4.44214564108989 4.39157262986634 4.93725952504837 4.1771826948308 4.57114783500123 4.5017505684095 4.35918742092428 4.99637358008028 0.269978898941674 0.269978898941674 0.280502340564065 0.273537984101913 0.272963251149187 0.2773292430395 0.273237955289452 0.275213208964271 0.271282261784081 0.273116624460093 0.274590821084149 0.279580888000435 0.269978898941674 0.269978898941674 0.269978898941674 0.269978898941674 0.272183506022811 0.27522397335741 0.283545051293882 3 3|0 +|/ 5114538 5115770 5115118.444 5111900 5115998 + gene protein_coding_gene FALSE TRUE AT3G15180.1 proteasome-related similar to hypothetical protein [Trifolium pratense] (GB:BAE71213.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.27998207384704 -3.03075928455427 0.0153954212997492 1 3.93538172045239 10.603514932627 -0.27998207384704 0.0911399568999347
AT1G06010_at 5.85378289900138 6.08729448263485 5.23393882817617 5.20822048033769 5.05108994692874 5.36461739233315 5.40290806993258 5.91856783092121 4.89064775390622 5.37244412038619 5.13875120338034 5.53280634689051 4.97990441952153 5.7447812510661 5.65581546489861 5.08625678707268 4.9006477978584 5.00053576750843 5.56569338500465 0.201394054343359 0.196019611948433 0.188691726221612 0.191606652536932 0.199055452319742 0.199354668285120 0.191367169420712 0.200486703609826 0.198555901775406 0.20049061494317 0.188851031961187 0.191498948616851 0.196689423210933 0.207154626921025 0.200606918751550 0.191350608584396 0.200526488403352 0.192275226649603 0.204220481935345 1 1|0 +|/ 1823355 1823633 1823525.444 1822617 1823996 + gene protein_coding_gene FALSE TRUE AT1G06010.1 similar to OSJNBa0084K01.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04829.1) -0.311248016001505 -3.02886551644413 0.0154410194225094 1 3.93268692900395 10.7806520577200 -0.311248016001505 0.112071239947323
AT2G38330_at 8.47296574010451 8.1253388765265 7.87334038488372 7.40253983110513 8.3216258980192 8.05089279971038 8.64418554389836 8.22995526572338 8.64149764351769 8.62521051334872 8.58545927405184 8.63255669627236 8.1101483928895 8.54794157930847 8.46699948861793 8.61194675978845 8.11317074877638 8.3443865432415 8.71098463241636 0.141285381068244 0.129109638327302 0.134603421796135 0.132079898110228 0.128301268259753 0.138822824721656 0.135613647918868 0.129050377569908 0.133253238466495 0.131604795510142 0.131981795609199 0.136341463199171 0.138912358354504 0.129675037255347 0.127234132248218 0.130522984756942 0.138511771040054 0.135644332806860 0.133903765082268 2 2|0 +|/ 16073415 16074397 16073984.429 16071581 16074515 + gene protein_coding_gene FALSE TRUE AT2G38330.1 MATE efflux family protein similar to MATE efflux protein-related [Arabidopsis thaliana] (TAIR:AT4G38380.1); similar to Os12g0106600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065941.1); similar to MATE efflux family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95621.2); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.344333186263101 -3.02517192383022 0.0155303572095607 1 3.92743019767612 16.683009100061 -0.344333186263101 0.132630423362993
AT1G01550_at 11.1833034999504 11.3896268973181 11.4228664059401 11.5389645715105 11.8569753511378 11.6811932279512 11.2968664829034 11.2615584787921 11.0843826467679 10.9767235071938 11.1868653901770 11.2112702962295 11.1965472645264 11.1063714647922 10.893526024727 11.1720953842382 11.3108905373325 11.1668671097874 11.0465021997758 0.0774709756971848 0.0776787267554838 0.0839082272377909 0.0817540822304866 0.0780927923024559 0.0792027466883148 0.0808950653299123 0.0802700089790375 0.0917045222152001 0.0838894668179013 0.0779264056541337 0.0774709756971848 0.0836648906264163 0.0807587023745787 0.0797661179835216 0.0774709756971848 0.0834162732929222 0.0820136982664173 0.0826055046108782 1 1 + 200986 201516 201222.909 199639 201775 + gene protein_coding_gene FALSE TRUE AT1G01550.1|AT1G01550.2 BPS1 (BYPASS 1) BYPASS1, required to prevent constitutive production of a root-derived graft-transmissible signal similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46080.1); similar to unknown [Solanum tuberosum] (GB:ABB16971.1) 0.230922891062171 3.02277015937969 0.0155887367375420 1 3.92401141545751 22.549631182049 0.230922891062171 0.0513929052048001
AT1G78280_at 6.61414390505609 7.12979197450405 6.72176320753317 7.3197551650543 7.02131608284218 7.22502756341961 6.32277434987532 6.36839737341544 6.38164075804316 5.8738774355306 6.3607382289833 6.64065375330419 5.88202760446405 6.15494186847052 5.83589437692586 6.7579126525171 6.87732889439425 5.90597236414946 5.88706386719807 0.217031680591162 0.216185655648054 0.232021804100824 0.217194758910001 0.220498600922648 0.227126329740409 0.224645146266444 0.217485318417285 0.237886299870362 0.222158599002943 0.220472211016338 0.216185655648054 0.222486468314018 0.225203152960382 0.22722518295449 0.216185655648054 0.227583299703241 0.220871825917416 0.221929941469322 1 1|0 +|/ 29461085 29461985 29461489.556 29457448 29462266 + gene protein_coding_gene FALSE TRUE AT1G78280.1 transcription factor jumonji (jmjC) domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06550.1); similar to hypothetical protein DDBDRAFT_0190735 [Dictyostelium discoideum AX4] (GB:XP_646466.1); similar to Os03g0389900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050272.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347) 0.358797484155036 3.02246617424896 0.0155961418924525 1 3.9235786763225 13.0151017384584 0.358797484155036 0.141340974707312
AT2G16630_at 5.7582979896921 6.09026814997131 5.45694882826527 5.75260997111507 7.37484096215472 7.39980968653452 6.1123585879277 7.3202872254043 8.26930967205022 6.68044599098786 8.84777035568024 8.31330420196373 6.85781949364894 8.40321119511576 8.66090200890679 6.09636530283717 6.33122896922605 8.27524114379757 5.70371884689792 0.249590883492629 0.237656024026345 0.257947373749414 0.247273023596461 0.239775274403189 0.258988425810224 0.237656024026345 0.246175711412738 0.251321474519067 0.239987885117595 0.243021719526229 0.250145694815031 0.238984724792704 0.245683893228784 0.23889909009859 0.243146857853072 0.271505361436321 0.247166916841283 0.244971625708458 2 2|0 +|/ 7216964 7217916 7217598.3 7216321 7218119 + gene protein_coding_gene FALSE TRUE AT2G16630.1 proline-rich family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT4G15160.1); similar to Os11g0657400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068397.1); similar to Os02g0101900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045593.1); similar to putative membrane protein [Emiliania huxleyi virus 86] (GB:YP_294122.1); contains domain PRICHEXTENSN (PR01217) 0.507244102176786 3.0197658703784 0.0156620823192443 1 3.91973432772471 13.7120385937376 0.507244102176786 0.222786270575783
AT1G11200_at 5.969997605406 6.3569312663596 5.59823279004208 5.92549040519518 5.49406893851515 5.72810548742826 4.41900260994864 5.29926486442183 5.11837704197242 3.98546242017962 5.20721379672062 5.47394862308281 5.47989451452598 5.26336603497156 5.07932218957905 5.15761399087649 4.99699669126997 4.94580505198673 4.45628215374385 0.233376966451503 0.232835865162455 0.232646715782032 0.223090408628913 0.227642276713821 0.232128298069147 0.225375829557830 0.226008497236502 0.239939991254695 0.238874688598353 0.227423592618865 0.223090408628913 0.224170788193001 0.23165696022281 0.224376251216887 0.226234652154079 0.248349974167108 0.233043054129649 0.223835322108074 1 1 + 3754364 3755396 3754740.636 3753365 3755639 + gene protein_coding_gene FALSE TRUE AT1G11200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21570.1); similar to unknown [Medicago sativa] (GB:AAZ32885.1); similar to Os07g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059733.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.427827445877921 3.01965944117854 0.0156646871951692 1 3.91958279558706 10.4591670710439 0.427827445877921 0.180379911551131
AT3G60240_at 9.11731750787685 9.46875424492849 9.38394835322826 9.34658374888568 9.38611051631808 9.3549117558647 9.00901332717185 9.04571082767077 8.82381897725018 9.19476535140814 9.47976352520728 9.56042628781567 9.46098500103222 9.23931307336612 8.9258113036441 9.4682858008587 9.42783383000159 8.93167099459463 9.0912964313129 0.107562000415964 0.105429687290276 0.104638609180458 0.105432159879350 0.105539983598578 0.103156658842201 0.104007625399407 0.114355725731065 0.112376212108944 0.106462663699661 0.111466304517442 0.102315061136608 0.102863058097109 0.108665363345365 0.110238403103524 0.102315061136608 0.102712657721571 0.107787882125516 0.109660286154319 3 3 + 22278221 22279226 22278860.636 22272625 22279430 + gene protein_coding_gene FALSE TRUE AT3G60240.2|AT3G60240.3|AT3G60240.4 EIF4G (EUKARYOTIC TRANSLATION INITIATION FACTOR 4G) protein synthesis initiation factor 4G (EIF4G). A mutation in this gene (cum2-1) results in decreased accumulation of CMV coat protein in upper, uninoculated leaves. Likely affects cell-to-cell movement of the virus, also affects TCV multiplication. Identical to Eukaryotic translation initiation factor 4G (Protein synthesis initiation factor 4G) (Cucumovirus multiplication 2 protein) (EIF4G) [Arabidopsis Thaliana] (GB:Q76E23;GB:Q9LKQ7;GB:Q9LY39;GB:Q9M4Q5); similar to MIF4G domain-containing protein / MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G24050.1); similar to putative eukaryotic translation initiation factor 4G [Oryza sativa (japonica cultivar-group)] (GB:BAD30897.1); similar to Os07g0555200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059958.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) 0.241411961868414 3.01935692876767 0.0156720937002100 1 3.91915207853304 18.4382378587708 0.241411961868414 0.0617259478829045
AT3G25920_at 10.9210185639240 10.9836371592361 10.2065118602354 10.1788450312211 10.6578238271938 10.6487301375964 10.9447347219372 11.2011530295501 11.4662125844699 11.4583174721678 11.5838030544857 11.9079196673090 11.2294719233448 11.4700743011168 12.1194249657375 11.482672112204 10.8402274729748 11.5882387967963 11.2432015363275 0.067797870782059 0.0631665905703397 0.0669454520127157 0.0663749457703405 0.0634268895055585 0.067381129427448 0.0650120563655003 0.0650697935878788 0.0658702649683236 0.0647073418528884 0.0634791962841426 0.064668233930961 0.0642432329796487 0.0648393481476822 0.0670126461518177 0.0637902977896082 0.0723778364739875 0.0636146282361225 0.0647506240830991 3 3|0 -|/ 9492505 9493449 9492853.556 9492296 9493872 - gene protein_coding_gene FALSE TRUE AT3G25920.1 RPL15 (ribosomal protein L15) encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complex Identical to 50S ribosomal protein L15, chloroplast precursor (CL15) (RPL15) [Arabidopsis Thaliana] (GB:P25873;GB:Q9LU99); similar to ribosomal protein L15 family protein [Arabidopsis thaliana] (TAIR:AT5G64670.1); similar to 50S ribosomal protein L15, chloroplast precursor (CL15) (GB:P31165); contains InterPro domain Ribosomal protein L15, bacterial form; (InterPro:IPR005749); contains InterPro domain Ribosomal protein L15; (InterPro:IPR001196) -0.225586491087896 -3.01883235843632 0.015684945526644 1 3.91840517840153 22.1762932418957 -0.225586491087896 0.0459555728089756
AT2G40290_at 7.71897899084618 7.92222496619974 7.57534385335324 7.58311762658196 7.52835024865987 7.25115388096695 7.7339008842443 7.96909234393392 7.3147339398989 7.51782061519393 6.9553730716894 7.4067550592119 6.80030650425901 7.21838575873535 7.86566152733393 6.96151551022988 7.18994068455216 7.09375467515079 7.19272736694076 0.163790862033830 0.171060346176619 0.157599664495442 0.157599664495442 0.162051872378043 0.169192906583884 0.168558724374288 0.173654271065122 0.171070447818736 0.164482240991874 0.158827297926438 0.157599664495442 0.173378492588582 0.161939046334284 0.167091465424866 0.162164810180039 0.167428549549804 0.165534884957273 0.165285227798252 2 0|2 /|- 16836117 16837272 16836770.444 16835844 16838132 - gene protein_coding_gene FALSE TRUE AT2G40290.1|AT2G40290.2|AT2G40290.3 eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative|RNA binding similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to eukaryotic translation initiation factor 2 alpha [Oryza sativa (indica cultivar-group)] (GB:CAI29542.1); similar to Os03g0296400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049829.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Eukaryotic translation initiation factor 2, alpha subunit; (InterPro:IPR011488)|similar to EIF2 ALPHA (eukaryotic translation initiation factor 2 alpha subunit), RNA binding [Arabidopsis thaliana] (TAIR:AT5G05470.1); similar to eukaryotic translation initiation factor 2 alpha [Oryza sativa (indica cultivar-group)] (GB:CAI29542.1); similar to Os03g0296400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049829.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Eukaryotic translation initiation factor 2, alpha subunit; (InterPro:IPR011488) -0.253428467849045 -3.01763050347319 0.0157144318523726 1 3.9166938569537 14.9243814691349 -0.253428467849045 0.0720876452360069
AT4G27130_at 9.9212733419333 9.89373856862603 10.0006381280474 9.8844724598916 10.3998118993476 10.0842071523565 8.665236391616 8.87366496314619 9.37046553860907 9.11481779379092 9.43497995477808 8.83615274212672 9.01578135018771 8.75788890999902 8.91814165769028 8.79212816394429 9.23946271504461 8.73829442759047 9.18110532358802 0.127098174748969 0.129351302824010 0.124671967517867 0.128372377157582 0.129612919621720 0.127564150893506 0.129045604307267 0.133398351494652 0.1357585707165 0.129543959322758 0.124433136920801 0.126987921600233 0.126018819286126 0.137197450676709 0.125431314327871 0.13683792101224 0.138866636118076 0.130403166532267 0.140841984969973 4 4 - 13604948 13605274 13605187.273 13604601 13606454 - gene protein_coding_gene FALSE TRUE AT4G27130.1 eukaryotic translation initiation factor SUI1, putative Identical to Protein translation factor SUI1 homolog 1 [Arabidopsis Thaliana] (GB:P41568;GB:Q9SLK5); similar to eukaryotic translation initiation factor SUI1, putative [Arabidopsis thaliana] (TAIR:AT5G54760.1); similar to Protein translation factor SUI1 homolog (Translation initiation factor nps45) (GB:Q9SQF4); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950); contains InterPro domain Eukaryotic translation initiation factor SUI1; (InterPro:IPR005874) 0.249139140877269 3.01643907673071 0.0157437190614884 1 3.91499727227573 18.8097470092036 0.249139140877269 0.0686356377884156
AT1G04410_at 12.7111878197042 12.8106482703079 12.9270299893594 12.9667586153721 12.6771317426672 12.7714670931729 12.7438001344284 12.8888589436059 12.2972116734192 12.4691288691163 12.7000628581784 12.8156321388824 12.7579274534548 12.6061738896412 12.7703669210531 12.5631032278986 12.7490925901894 12.8272279194255 12.2445398751298 0.0653577827213278 0.0643391022778942 0.0654988051049396 0.0660697537790437 0.0643775163625469 0.0643391022778942 0.0643391022778942 0.0669494856057481 0.069796020055039 0.0652239944452762 0.0670394790381969 0.0654055801965649 0.0655419813669323 0.0645121454577468 0.0678663104414873 0.0650038903324271 0.0665792309007035 0.0656557372120254 0.0659145996106717 1 1|0 -|/ 1189423 1190260 1189948 1189077 1191411 - gene protein_coding_gene FALSE TRUE AT1G04410.1 malate dehydrogenase, cytosolic, putative Identical to Malate dehydrogenase, cytoplasmic 1 (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:P93819); similar to malate dehydrogenase, cytosolic, putative [Arabidopsis thaliana] (TAIR:AT5G43330.1); similar to malate dehydrogenase-like protein [Solanum tuberosum] (GB:ABC01890.1); contains InterPro domain Malate dehydrogenase; (InterPro:IPR008267); contains InterPro domain Malate dehydrogenase, NAD or NADP; (InterPro:IPR010945); contains InterPro domain Malate dehydrogenase, NAD-dependent, cytosolic; (InterPro:IPR011274); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557) 0.216855651874960 3.01628092170352 0.0157476110219436 1 3.91477205207955 25.3424395831083 0.216855651874960 0.0352165013883272
AT2G41710_at 6.00931445452819 6.30958470798851 5.84418068264436 5.68856954383891 6.48237089899308 6.39436083922306 4.78641305641039 5.0183843542442 5.7777587955972 5.72215484738156 6.11743241787267 6.08241877472739 6.13348088486498 5.51817535089575 5.94039152729492 6.2013587939644 6.27069201281217 5.59986286077242 6.64004687309139 0.240922750674808 0.230217351378058 0.230342088938161 0.238697740848152 0.229963166814321 0.236367538794384 0.246517394389581 0.239783881652929 0.241198470354172 0.234703617827057 0.234309080310531 0.236364045635975 0.234517764777845 0.241778159127103 0.230198401532503 0.23508026222908 0.234630156428073 0.239288145763172 0.23124457583868 2 2 - 17407377 17407995 17407742.273 17407100 17410128 - gene protein_coding_gene FALSE TRUE AT2G41710.1|AT2G41710.2 ovule development protein, putative similar to WRI1 (WRINKLED 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G54320.3); similar to AP2/EREBP transcription factor [Brassica napus] (GB:ABD16282.1); similar to Os09g0423800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063215.1); similar to Os05g0389000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055431.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.25388471021295 3.01571979353270 0.0157614276027183 1 3.91397296337559 11.8314623588625 0.25388471021295 0.0725867891202446
AT3G53090_at 6.20056700337023 6.4986723290665 6.2896966597161 6.66206037504057 6.80360974237675 6.30174486063504 7.00548214508215 6.55209083852406 6.163670798295 6.39510612829074 5.29803287383257 5.27770237993253 5.41282478349336 6.16967763507301 5.0342747410017 6.10851756711644 5.39944868604675 6.06146318315544 6.2442518981332 0.242976550098183 0.244163152035441 0.253019613846099 0.261698349043620 0.252172880494447 0.268123285864415 0.247357298480025 0.244753545825903 0.255702389869437 0.250107775459179 0.248128564492402 0.256846519535085 0.242976550098183 0.242976550098183 0.257451352223548 0.248514157506842 0.257341510664109 0.253117373879289 0.243047105340691 3 0|3 /|+ 19694586 19695225 19695002.25 19690186 19696338 + gene protein_coding_gene FALSE TRUE AT3G53090.1|AT3G53090.2 UPL7 (ubiquitin-protein ligase 7); ubiquitin-protein ligase encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. similar to UPL6 (UBIQUITIN PROTEIN LIGASE 6), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G17205.1); similar to putative ubiquitin protein ligase [Oryza sativa] (GB:AAK14420.1); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.361179356634228 -3.01536072248104 0.0157702755527604 1 3.91346160627534 12.4706999972828 -0.361179356634228 0.143223364288513
AT3G52140_at 7.4237001179495 7.25579830804071 7.30350012365166 7.16542209743183 7.0036127677538 6.89614408358888 7.16763637337081 7.40019576067724 7.04287067326155 7.12129330730177 6.58453423394607 6.88435166068768 7.07694673694978 6.52986948566451 7.08675134822197 7.16523671042235 7.10987410246058 6.69822375256553 7.27437411749845 0.141424251197543 0.146559650215931 0.142789398137026 0.144939371846253 0.141118067935908 0.148551745301297 0.141364586335887 0.141276037698954 0.150429384817019 0.142464366038904 0.151773509933084 0.152344883009191 0.143417004608144 0.151915963781188 0.144132665307870 0.148512450507784 0.147152493198919 0.158630922651867 0.147352071112125 3 3|0 +|/ 19351530 19352207 19351930.8 19343907 19352635 + gene protein_coding_gene FALSE TRUE AT3G52140.1 tetratricopeptide repeat (TPR)-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G15290.1); similar to Putative eukaryotic translation initiation factor 3 subunit (eIF-3) (GB:O15818); similar to Os02g0717400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047932.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.236934367029404 -3.01190552797882 0.0158556793915366 1 3.90854051115595 14.2210776390008 -0.236934367029404 0.0581448079298559
AT4G32900_at 5.98614291192146 6.12234984285289 5.40917929363771 5.88853307260332 5.66854433120333 5.88694713930702 6.1945870699638 6.24573356512635 5.27804154069018 5.69303210058624 5.35912626975905 5.46341375374794 5.5103604154344 5.47074588173678 5.60402771710686 5.26327032376753 5.3242027614669 4.38592276179289 5.3486321977106 0.211671308344108 0.218437179433778 0.213335308635394 0.213000071323560 0.211671308344108 0.225758008618400 0.216812692812854 0.219048074569211 0.222975252836115 0.219292733396295 0.211671308344108 0.214240262014608 0.211671308344108 0.216013103412941 0.223460623751709 0.211965163940023 0.221547947057761 0.225768560489316 0.211841649956398 4 0|4 /|- 15879569 15880308 15880011.5 15878737 15881044 - gene protein_coding_gene FALSE TRUE AT4G32900.1|AT4G32900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03010.2); similar to Os05g0520200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056070.1); similar to hypothetical protein DKFZp434A1535.1 - human (fragment) (GB:T46479); similar to Bcl-2 inhibitor of transcription isoform a [Homo sapiens] (GB:NP_001015509.1); contains InterPro domain Peptidyl-tRNA hydrolase, PTH2; (InterPro:IPR002833) -0.283085299502869 -3.01126521794756 0.0158715588502833 1 3.90762844127199 11.2940199942923 -0.283085299502869 0.0945721371764917
AT4G29130_at 8.42610520927048 8.53600974964161 8.57123400135515 8.52495096425232 8.13368923644702 7.9450114972431 9.09645661351111 9.11529647489213 7.92036053223791 8.22332142847305 7.83739396980114 8.16868221070135 8.19629771012842 8.23909096204165 7.94845193223544 8.27877728049888 8.12731509481056 7.92520937922526 7.94210055007959 0.149245070630664 0.137435639580236 0.141004795080649 0.151508523432133 0.145996105116903 0.145331403290245 0.142693274905256 0.144267717351918 0.163909169733397 0.139597962353054 0.146238250025388 0.150238777965195 0.140081449959215 0.150752078782691 0.139904189286589 0.137435639580236 0.147484911300619 0.147995390584892 0.141484934134601 4 4|0 -|/ 14352345 14353073 14352666.9 14352043 14355109 - gene protein_coding_gene FALSE TRUE AT4G29130.1 ATHXK1 (GLUCOSE INSENSITIVE 2); ATP binding / hexokinase Encodes a hexokinase (HXK1) in the plant glucose-signaling network. Functions as a glucose sensor to interrelate nutrient, light, and hormone signaling networks for controlling growth and development in response to the changing environment. Identical to Hexokinase-1 (EC 2.7.1.1) (Protein GLUCOSE INSENSITIVE 2) (HXK1) [Arabidopsis Thaliana] (GB:Q42525;GB:Q42535); similar to ATHXK2 (HEXOKINASE 2), ATP binding / hexokinase [Arabidopsis thaliana] (TAIR:AT2G19860.1); similar to hexokinase [Brassica oleracea] (GB:AAL60583.1); similar to hexokinase [Brassica oleracea] (GB:AAL60584.1); similar to hexokinase [Citrus sinensis] (GB:AAG28503.1); contains InterPro domain Hexokinase; (InterPro:IPR001312) -0.219093719918805 -3.01122200935437 0.0158726310014047 1 3.90756689297858 16.6029674621735 -0.219093719918805 0.0387639963770005
AT1G03080_at 6.14421651845585 6.69478822973607 7.2677003653719 7.28498777830713 7.42673471335853 6.58075550908987 7.2191782023471 6.84519966418133 6.24760266347608 6.8850331264889 7.42675617548985 7.51823452891065 6.73280986863305 7.555591720596 5.98938249841 7.28783580905439 6.6589286084701 6.75219526489573 6.45576955885271 0.219062872928332 0.221683129741727 0.225451637457896 0.22373297088195 0.223013726472071 0.235780528604023 0.222036619686247 0.224540946356730 0.231633165550794 0.224253775032217 0.225363460874334 0.229565410664269 0.218631224314021 0.222664661341335 0.220820340698576 0.230454519819342 0.223856962907524 0.224567839299256 0.218631224314021 1 1 - 731807 732363 732107.727 731704 737332 - gene protein_coding_gene FALSE TRUE AT1G03080.1 kinase interacting family protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT3G22790.1); similar to M protein repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G14760.1); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT4G02710.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82954.1); similar to Prefoldin; tRNA-binding arm; t-snare; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE80288.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) 0.437473648776673 3.01114367247767 0.0158745749953053 1 3.90745530598496 13.6927877520627 0.437473648776673 0.186302715464688
AT1G45976_at 7.04127689575208 7.21706849300708 7.50912515983706 7.5167438630301 7.86930659032342 8.0054321657119 6.58074275092776 6.9929623631179 6.74893605420314 6.92151290283727 6.80722427393667 6.17877342686666 6.81975714183874 6.81454341277332 6.39391295982932 7.23065723635118 6.97213231037993 6.78753040861201 7.2973609191867 0.163102149727265 0.159896021831137 0.158094713374355 0.158094713374355 0.159822736004002 0.161068815876820 0.171494472010427 0.1693795804118 0.179646757097475 0.165474094263187 0.170013353978690 0.161543680360505 0.162658840056909 0.165571891775629 0.174979585853588 0.160078811322609 0.166296024060151 0.167107533808929 0.163094744382571 1 1|0 +|/ 17202425 17203078 17202769.8 17201765 17203175 + gene protein_coding_gene FALSE TRUE AT1G45976.1 SBP1 (S-RIBONUCLEASE BINDING PROTEIN 1); protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G10650.1); similar to hypothetical protein MtrDRAFT_AC148486g8v1 [Medicago truncatula] (GB:ABE89598.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.264217878302762 3.00955298042251 0.01591410275123 1 3.90518934134446 14.2115004627463 0.264217878302762 0.0810620097551305
AT1G08450_at 11.0145420810946 11.1915874404797 11.2765952304944 11.3572584688886 10.5351908868239 10.3681099452909 8.69758117586186 8.8462126407042 10.4322803828435 9.24749449520672 9.30984127558976 9.6610589689229 9.065939410668 9.26569969474033 9.05184597542191 9.42418084159253 8.81136611513323 9.29987697152737 9.49055884948404 0.125897449410226 0.129262819335076 0.128022777526212 0.126985427267405 0.127140715302211 0.136761486823869 0.126564078787311 0.122435514776014 0.132373228732241 0.125154786100841 0.122435514776014 0.124760527693975 0.122435514776014 0.123242705692089 0.124929444422903 0.12271563290942 0.133206276501205 0.132385399412620 0.122435514776014 1 1|0 -|/ 2668301 2669832 2669064.75 2667822 2671826 - gene protein_coding_gene FALSE TRUE AT1G08450.1|AT1G08450.2 CRT3 (CALRETICULIN 3); calcium ion binding Encodes calreticulin CRT3. Identical to Calreticulin-3 precursor (CRT3) [Arabidopsis Thaliana] (GB:O04153;GB:Q9SJE7); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to Calreticulin-3 precursor (GB:O04153); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE78019.1); similar to calreticulin 3 [Brassica rapa subsp. pekinensis] (GB:AAQ19995.1); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)|similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to Calreticulin-3 precursor (GB:O04153); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580) 0.229794689597060 3.00923470229241 0.0159220240144524 1 3.90473592590482 19.8907200999769 0.229794689597060 0.0512951570046142
AT2G20190_at 5.67881178134291 5.92193568381629 5.96828425821402 6.0490804179606 6.17205241678384 6.11527414052455 6.15520728834054 6.10150925040525 5.44752429897135 5.58580582275392 6.15555292582658 5.92094292522734 6.11793675508029 6.1051237873498 5.83777079670905 6.02747032267161 5.64291775477356 5.69868172967404 5.76580583372278 0.136122342939545 0.138456412331823 0.142201506988027 0.142633663986252 0.140315398806061 0.142995664534582 0.140484296660856 0.143338539594829 0.147211670372081 0.139886022607881 0.141757378333219 0.139140931789939 0.139809186360633 0.136897197987433 0.142645777024730 0.136320522344158 0.140151591524778 0.138262612678604 0.141232792926304 2 2|0 -|/ 8718960 8725808 8722480.167 8718680 8726099 - gene protein_coding_gene FALSE TRUE AT2G20190.1 CLIP-associating protein (CLASP) -related similar to Mast C-terminus, putative [Medicago truncatula] (GB:ABE89955.1); similar to CLIP-associating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22009.1); similar to Os04g0507500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053263.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.225197223454597 3.00892000031366 0.0159298602927561 1 3.90428759732429 11.7892752095802 0.225197223454597 0.0463529762434053
AT1G44790_at 7.75290697600681 7.9046464568579 8.03897249557429 8.03515908554027 7.87281222359872 7.47295924123426 7.50523885327803 7.44893728919014 6.91278566766932 7.11459744651405 7.18554357646571 7.70792800727453 6.90165701600909 7.3922914065663 7.1543119653736 7.9404678111214 7.33899354280624 7.46938818794268 7.2033884478965 0.223129149887641 0.216185015068978 0.224815140735709 0.225694869835644 0.221755861451763 0.224141919796872 0.215434748428831 0.227013020407398 0.238408692874056 0.222282716267482 0.218239151956740 0.217907368893268 0.216112395166110 0.230929008470358 0.220047246477094 0.218849761270472 0.233776504187276 0.230090169653832 0.218046547712304 1 1|0 -|/ 16914916 16915949 16915362.286 16914594 16916104 - gene protein_coding_gene FALSE TRUE AT1G44790.1 ChaC-like family protein similar to ChaC-like family protein [Arabidopsis thaliana] (TAIR:AT4G31290.1); similar to ChaC-like family protein-like [Solanum tuberosum] (GB:ABB87104.1); similar to Os04g0448600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052924.1); similar to meloidogyne-induced (GB:ABA46779.1); contains InterPro domain ChaC-like protein; (InterPro:IPR006840) 0.255721101410993 3.0069552817918 0.0159788734838377 1 3.90148846098733 14.9855773492708 0.255721101410993 0.0746529188832278
AT1G17840_at 9.43541311936144 9.63273926291433 9.67593227384456 9.91481611904596 10.7981743715730 10.1907160586696 10.1373530532867 10.069465679824 10.4546521863374 10.0369677282225 10.9992678542706 10.6863318235305 10.8163269648142 10.5871046125072 10.3859214049811 9.98107860746355 9.67367193834522 10.4764079898540 9.92472992885084 0.122914027936041 0.118403588909159 0.118416275419315 0.117732344217729 0.118409092199198 0.122355597827643 0.121130234614902 0.113501028346366 0.123793470071843 0.11667652137139 0.115145594248259 0.113482445848801 0.113482445848801 0.121793421633832 0.117069654100048 0.113482445848801 0.134781474069304 0.120251959539680 0.119196812243188 1 1|0 +|/ 6145136 6145808 6145503.7 6142603 6146514 + gene protein_coding_gene FALSE TRUE AT1G17840.1 ABC transporter family protein Identical to White-brown complex homolog protein 11 (WBC11) [Arabidopsis Thaliana] (GB:Q8RXN0;GB:Q9LMU4); similar to CER5 (ECERIFERUM 5), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G51500.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G51460.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Os10g0494300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064944.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1); similar to Os04g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053375.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.319073772635263 3.00478069824898 0.0160333043622195 1 3.89838998419705 20.2765998326188 0.319073772635263 0.118592000721786
AT2G30390_at 9.43317315123312 9.3219741810044 9.46168456219316 9.23416121097426 9.44054460948445 9.12072799100971 10.2805042417657 9.89986567709945 9.4283091373608 9.77003561117653 9.57389692928688 9.53400028503828 9.28458276218667 9.46809413596752 9.3703673375627 9.5844240565756 9.55013100742589 9.2460623351404 9.6088197077898 0.101509618544265 0.103063177684600 0.099750815429917 0.104002653041080 0.100518347676621 0.103280522552568 0.103548351706321 0.104169007837975 0.104850054827988 0.104503956091368 0.0994205112539828 0.0998328645420108 0.100314942926505 0.102569874008494 0.102944250123043 0.102284845854587 0.106831284166915 0.113847336972942 0.104100705821114 2 2|0 -|/ 12958320 12959091 12958553.111 12958104 12961167 - gene protein_coding_gene FALSE TRUE AT2G30390.1 ferrochelatase II Identical to Ferrochelatase-2, chloroplast precursor (EC 4.99.1.1) (Ferrochelatase II) (Protoheme ferro-lyase 2) (Heme synthetase 2) [Arabidopsis Thaliana] (GB:O04921;GB:O23623;GB:Q7GB39); similar to ferrochelatase [Arabidopsis thaliana] (TAIR:AT5G26030.2); similar to ferrochelatase [Nicotiana tabacum] (GB:CAC50871.1); similar to ferrochelatase [Oryza sativa] (GB:BAA22284.1); similar to ferrochelatase [Cucumis sativus] (GB:BAB20760.1); contains InterPro domain Ferrochelatase; (InterPro:IPR001015) -0.285271507660655 -3.00400713233421 0.0160527133912682 1 3.89728767393609 19.0509959572240 -0.285271507660655 0.0965546509212317
AT4G23880_at 7.38199657813716 8.03033983083555 8.39254267486931 8.36507851434739 9.49272194149583 9.1011222830025 6.21121566277011 6.91462155185326 5.53636832884093 5.3857743193798 4.51652125068294 4.23284969238602 5.27442519026429 4.52122453630366 3.99575038577672 4.30859648840242 5.69432080477016 4.60221589316148 5.57969883780981 0.2642598386035 0.260543276093524 0.260190505868692 0.267684815790315 0.267064842379286 0.273365262104405 0.261469451047024 0.260906581156301 0.257923297093335 0.263163334221254 0.257923297093335 0.260445975655888 0.26077335696246 0.261909293247570 0.259475671600314 0.258130428223794 0.257923297093335 0.257988019408465 0.27225443645549 4 4 - 12415801 12416373 12416069.636 12415687 12416460 - gene protein_coding_gene FALSE TRUE AT4G23880.1 unknown protein 0.422973574535675 3.00382872678119 0.0160571931004673 1 3.89703344442233 13.0581308091115 0.422973574535675 0.178944998487657
AT3G15351_at 5.59589410835533 5.45277737194183 5.91830726674842 5.83836224300996 6.49707725294467 5.89418049430409 5.96520010252175 5.89911260330981 5.61578608691932 5.86370456494575 4.87505019882363 4.46844219753277 5.0689012936415 4.97779112460204 4.63498583100279 5.09452121059885 5.24906072222552 4.82383416179729 5.96475446308621 0.199850293531137 0.194530422806244 0.197857491948720 0.195217603539548 0.194530422806244 0.209894472878152 0.200349592430059 0.201346201761946 0.207793182950488 0.198327068912274 0.19511444020426 0.196510247216735 0.199200254076271 0.203322666015150 0.203387557862746 0.202015903448397 0.204183262621282 0.202028989154226 0.204614713633282 3 3 + 5177064 5177498 5177260.182 5176066 5177655 + gene protein_coding_gene FALSE TRUE AT3G15351.1|AT3G15351.2 similar to Os07g0485600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059659.1); contains InterPro domain Prefoldin; (InterPro:IPR009053)|similar to Os07g0485600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059659.1) -0.303469630701383 -3.00363094996493 0.0160621607301668 1 3.89675160784721 11.2395247874812 -0.303469630701383 0.108725394261693
AT1G21370_at 6.57157801934226 6.78123099384431 6.84794069492131 7.39044486793479 5.98232479707124 6.20901607530486 5.28063078616334 5.07900680164543 5.172803432528 4.99552508556685 4.88212523851265 5.22049485963491 4.39974051294513 5.01900333661553 5.01284873470195 5.06734607968843 5.2665684815978 5.27496430241143 5.05918098508316 0.224058694939804 0.226905059276219 0.234613893103362 0.229404462709061 0.212446858419195 0.225652700765190 0.215332307777715 0.214071266106965 0.21891993290068 0.219463827293569 0.211224483576985 0.218898995479605 0.221361907477710 0.223323048722119 0.216988919996285 0.212331215068576 0.218837206166449 0.214501948302933 0.217237143661159 1 1 + 7484725 7485391 7485098.182 7483770 7485655 + gene protein_coding_gene FALSE TRUE AT1G21370.1|AT1G21370.2 similar to H0315A08.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67583.1) 0.310684950381680 3.00134859805311 0.0161196027169978 1 3.89349898768739 11.3146331016899 0.310684950381680 0.113519943795094
AT1G61770_at 7.86437291522317 8.36064927018307 7.55354416141876 7.62109263005434 7.5746700309351 7.18339579475193 7.68699144593176 7.9643214533837 7.33257433522594 7.36890251741646 7.50852406114724 8.06412370639136 7.07718050421774 7.32421726572775 7.09373724038991 6.95965298079025 6.88652960604185 6.96516612097992 7.47069594980919 0.226538693310645 0.217568177663814 0.226713722799007 0.216387707855655 0.225857579360297 0.237240675924561 0.218151428555421 0.219318519608848 0.248763266343117 0.227991988440668 0.221515848516213 0.222000080637357 0.228030687950699 0.234529696031377 0.228687100650789 0.215705919946371 0.241531095449391 0.231940386907223 0.215705919946371 1 1|0 +|/ 22814717 22815803 22815431.333 22813830 22816272 + gene protein_coding_gene FALSE TRUE AT1G61770.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G18140.1); similar to 62114 (GB:AAD21421.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.320870474331752 -3.00044202008942 0.0161424783965736 1 3.89220689759001 15.0389375643325 -0.320870474331752 0.120003206185199
AT2G20850_at 5.74227514653148 5.58707080352099 4.85735884770842 4.68480421218946 5.80550144273561 5.42876498973773 5.63268358854058 5.19476489764042 4.67397321917299 5.64398890812053 4.95426201209595 5.37854042792387 5.06330430399253 4.61469497325129 5.08946212187287 4.75036330071249 4.85248852547292 5.14019566401546 5.3972697507926 0.206518547955212 0.200862755703939 0.201669703564464 0.199311473199052 0.203932134115917 0.205371143724241 0.199311473199052 0.200646941837778 0.209188692655424 0.200642210364877 0.199311473199052 0.199311473199052 0.201876152561586 0.203575907894563 0.208760073055789 0.20085442799966 0.204042836677908 0.208854821539597 0.212847287281711 2 2|0 -|/ 8982810 8983517 8983176.375 8982429 8986460 - gene protein_coding_gene FALSE TRUE AT2G20850.1 SRF1; kinase similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G03390.1); similar to leucine-rich repeat transmembrane protein kinase 2 [Zea mays] (GB:AAC27895.1); similar to Os02g0176100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046061.1); similar to Os02g0190500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046150.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.301543972913548 -2.99961082653587 0.0161634814555401 1 3.89102219359407 10.4760652621735 -0.301543972913548 0.107734920029846
AT4G28290_at 7.76325744409026 7.61520270294488 8.3831837687506 8.45901639184476 8.00774239158578 8.02254551564348 8.53446271539947 8.56858362503039 8.11154483061356 8.31369250569674 8.6787789431213 8.2744639665211 8.93702161856717 8.880967197179 7.47007971059098 9.09134445102276 8.91601340182562 8.43215521373148 8.35186163500638 0.150988575198548 0.144169603853051 0.147794569054580 0.142552562786304 0.144254955762869 0.146348758064295 0.148943205829068 0.147677053492132 0.154228244637917 0.145817725975185 0.145367981258008 0.141633388088245 0.144522393994054 0.143977347657444 0.157619510563756 0.142118471206559 0.145990891321206 0.157989151877313 0.144413196062482 4 0|4 /|- 14012044 14012113 14012074.625 14011875 14012589 - gene protein_coding_gene FALSE TRUE AT4G28290.1 unknown protein 0.211907733735472 2.99903352647929 0.0161780856511320 1 3.8901993344349 16.5913173460406 0.211907733735472 0.0294976545525084
AT1G19140_at 5.09172108702055 5.69880275135264 5.52324040917983 5.52657756394933 5.45710545337509 5.51041054467168 7.17798978551744 7.08474645042798 4.87127190116865 5.75532314039731 4.9797965070555 5.50437026556468 5.50998135243902 5.59642498151555 5.72347865335346 6.07560712063924 5.45137183208052 5.59952537357641 5.5604089083387 0.211911386242099 0.212487454973941 0.209202737736754 0.213375099938882 0.20807634480858 0.218708836473449 0.213149073680679 0.227905350156836 0.220057216052089 0.213329197376890 0.20807634480858 0.20807634480858 0.210781081421738 0.211505644253167 0.212788720468890 0.209113232344488 0.222094547190500 0.20807634480858 0.20807634480858 1 1|0 -|/ 6611017 6611953 6611577.5 6610712 6612507 - gene protein_coding_gene FALSE TRUE AT1G19140.1|AT1G19140.2 similar to PREDICTED: similar to Coenzyme Q9 homolog (yeast) [Gallus gallus] (GB:XP_414002.1); similar to Os03g0405100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050328.1); contains InterPro domain RpsU-divergently transcribed; (InterPro:IPR012762); contains InterPro domain COQ9; (InterPro:IPR013718) -0.299789999154584 -2.99801136786052 0.0162039771534684 1 3.88874233095621 11.3591930027266 -0.299789999154584 0.106691398273459
AT3G03380_at 7.51284756961461 7.71676562501056 7.83616646854453 7.70829399411787 8.47289643714965 8.00993156289223 7.23667418689489 7.20796237952472 6.80092091859236 6.42367414001348 6.29795316285237 6.36390562513269 7.03928378379224 6.72363298321928 6.54517419639378 6.82313699934479 6.72436092662402 6.56806306408651 6.79179263185515 0.170258942905097 0.169385764510878 0.168908734877450 0.166110838517401 0.185073583002890 0.175676534487569 0.166406382866275 0.170202394691860 0.172194942551906 0.176186543889713 0.168486727552150 0.170039341824419 0.166831343654313 0.167099730925886 0.171635898028936 0.164943426198985 0.170276294842543 0.168647230076516 0.170559928187392 3 3|0 +|/ 804916 808274 806441.059 799622 808529 + gene protein_coding_gene FALSE TRUE AT3G03380.1 DEGP7 (DEGP PROTEASE 7); serine-type peptidase/ trypsin Encodes a putative DegP protease. Identical to Protease Do-like 7 (EC 3.4.21.-) (DEGP7) [Arabidopsis Thaliana] (GB:Q8RY22;GB:Q9SRP2;GB:Q9SRP3); similar to Os02g0712000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047905.1); similar to serine protease [Schizosaccharomyces pombe 972h-] (GB:NP_595209.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.27590964397096 2.9973892958856 0.0162197553805894 1 3.88785557972674 14.3666013143858 0.27590964397096 0.0904357223920808
AT1G48160_at 7.22088793078065 7.27829396726814 6.3889848710249 6.84455414051709 7.00914912609581 6.47550463045603 6.61472708201427 6.7095404448787 5.89312482902657 6.59983864172755 6.11265193601154 6.731630236104 6.22298573119659 6.14928982749947 6.00723019257007 6.38011796478307 5.77056963642473 5.80526845001678 7.07190122337529 0.24062586255518 0.234899960169926 0.246349364408411 0.235816199359146 0.235643075441690 0.241762785581281 0.241764673270275 0.236822703601930 0.246340386944272 0.242181550796922 0.238078016269548 0.243770344841175 0.237009654365635 0.249167946581185 0.247780327157020 0.235923273193439 0.239459233862399 0.250668050979709 0.234270220711182 1 1|0 -|/ 17790479 17791829 17791165.222 17790214 17792693 - gene protein_coding_gene FALSE TRUE AT1G48160.1 signal recognition particle 19 kDa protein, putative / SRP19, putative Identical to Signal recognition particle 19 kDa protein (SRP19) (SRP19) [Arabidopsis Thaliana] (GB:Q943Z6;GB:Q9LNG9); similar to LOC495049 protein [Xenopus laevis] (GB:AAH84166.1); similar to Os06g0342100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057570.1); contains InterPro domain Ribonucleoprotein complex SRP, Srp19 component; (InterPro:IPR002778) -0.325233866048001 -2.99719221638402 0.0162247574220343 1 3.88757464074384 13.1522500548972 -0.325233866048001 0.122930319747782
AT1G11910_at 12.8658328382108 12.9562490937992 13.3089810917524 13.4086361408690 13.0813735457160 13.0694356104556 12.9778415226022 13.1711241860795 12.6625370572889 12.8281580494634 12.8277191401112 12.6763272409314 12.9956917373908 12.8655937402615 12.6812692950916 12.9988939301893 13.1753428275094 12.9629419733423 12.5587296163932 0.055853992869136 0.0556940341604275 0.057288585530252 0.0577878588288848 0.0564424339240292 0.0584738213304356 0.0567461981790693 0.0571981275793858 0.0604391032237231 0.0562820057714253 0.0561663793696969 0.0564091997477913 0.0565425163549531 0.0594034775020008 0.0560640890791432 0.0558366971368444 0.0572663886563946 0.0556940341604275 0.0557273919700404 1 0|1 /|- 4017119 4017817 4017514.889 4016782 4020981 - gene protein_coding_gene FALSE TRUE AT1G11910.1 aspartyl protease family protein similar to pepsin A [Arabidopsis thaliana] (TAIR:AT1G62290.2); similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G04460.1); similar to aspartic protease (GB:AAB03108.1); similar to Aspartic proteinase precursor (GB:O04057); similar to aspartic proteinase [Theobroma cacao] (GB:CAC86004.1); contains InterPro domain Saposin-like; (InterPro:IPR011001); contains InterPro domain Saposin B subdomain; (InterPro:IPR008140); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Saposin B; (InterPro:IPR008139); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007); contains InterPro domain Saposin-like type B, 2; (InterPro:IPR008138); contains InterPro domain Peptidase aspartic, active site; (InterPro:IPR001969); contains InterPro domain Saposin; (InterPro:IPR008373); contains InterPro domain Saposin-like type B, 1; (InterPro:IPR007856) 0.219587799123483 2.99617056347415 0.0162507134456324 1 3.88611821658505 25.8954912836782 0.219587799123483 0.0408082310000685
AT3G51130_at 8.48374100673084 8.73261072733585 8.95044736060283 9.19337787680672 9.32341662936603 8.7330841711047 8.65024262518195 8.5342536238731 8.26241343924685 8.18774042750546 8.38886134115374 7.92029575965177 8.60186497167418 8.5945929306097 7.67750174804098 8.73638808125293 8.33560414980312 8.36409962825457 7.9578887099582 0.150789215254256 0.155699255797431 0.158571661717167 0.159545747405532 0.157590200567607 0.157068713250743 0.152416949004197 0.146184752231887 0.162602124345649 0.153875132621456 0.154720812677501 0.151596848411724 0.155838025174844 0.153787643398471 0.156259888940288 0.147520492338598 0.174572053717177 0.154850783154031 0.154859619840055 3 3|0 +|/ 19006696 19008131 19007469.333 19005120 19008568 + gene protein_coding_gene FALSE TRUE AT3G51130.1 Identical to UPF0183 protein At3g51130 [Arabidopsis Thaliana] (GB:Q9SD33;GB:Q94C31); similar to ENSANGP00000005609 [Anopheles gambiae str. PEST] (GB:XP_310381.2); similar to Os06g0714000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058570.1); contains InterPro domain Protein of unknown function UPF0183; (InterPro:IPR005373) 0.32062819887896 2.99437605016007 0.0162964088653132 1 3.88355984667715 17.0568543868962 0.32062819887896 0.120257083365567
AT1G34020_at 6.19205187153774 5.99065495010904 5.9662225477902 6.04537117918964 5.54798084242815 6.69435471637188 6.19235391670925 6.01443978728737 5.34002845506958 5.29769621059473 6.38521763199695 6.370268727866 5.97850121118378 6.60216453876964 6.3568856232616 6.04407628580735 6.27237623965615 5.7080029829207 5.0984294141658 0.177819828434053 0.172245260892318 0.175989414102964 0.171641118381964 0.182258451405771 0.171641118381964 0.175423871284338 0.174157487864358 0.198937444092282 0.174804354933283 0.171641118381964 0.177995084124508 0.171641118381964 0.176799020594203 0.180109366050046 0.17328886883736 0.187605452199044 0.191779290466922 0.172524718056354 1 1|0 +|/ 12367969 12368897 12368457.4 12366834 12369158 + gene protein_coding_gene FALSE TRUE AT1G34020.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT4G09810.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE81202.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.467704575970094 2.99168840701975 0.0163650959721276 1 3.87972772561485 11.8104644006576 0.467704575970094 0.204222960804610
AT1G63670_at 5.33447564324709 6.0829888860443 4.46132697809563 4.72850193715173 5.90676619932511 6.025270371942 6.08148411038129 6.04464693732881 4.30131931288595 4.87227100417434 4.81261981626695 5.17183968696583 4.4659216044586 4.03023252176893 4.92391888049405 4.67569305106527 4.99484850779678 4.07757914986979 5.04996708924964 0.233392190449309 0.231783543342870 0.232698726290343 0.235429478584764 0.231783543342870 0.240273296463418 0.235330175718424 0.240622040249017 0.245706316420846 0.235578074203849 0.238758814148066 0.231783543342870 0.237895663959237 0.231841047715449 0.23222958726011 0.240065213333662 0.235698032789010 0.233917474933317 0.234037163802037 1 1 - 23611361 23611847 23611515.727 23611085 23614316 - gene protein_coding_gene FALSE TRUE AT1G63670.1|AT1G63670.2|AT1G63670.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32828.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain gb def: Hypothetical protein At4g28760 (PTHR21726:SF7) -0.351268336194647 -2.98947066467085 0.0164219997416793 1 3.87656519894316 10.2758163601590 -0.351268336194647 0.13920467564294
AT1G45130_at 4.53686899304348 4.57695964832192 2.94114299300534 2.92604062442647 3.52713472145749 3.29031225661261 4.17587939884996 3.9114505731346 5.03106437893517 5.13707503994955 6.32432859745427 6.73441051944029 5.6456906559787 6.23159718958897 6.85643956533 5.26898275181423 4.90947540007553 5.93416891416503 5.84339120358867 0.233399264538862 0.230320830564361 0.232251490404080 0.234270252095403 0.230382867084177 0.240191525568337 0.236723735862999 0.227965184980343 0.232351501698718 0.230338022396686 0.231774374736944 0.226810720146302 0.226810720146302 0.228374036803213 0.237618589123801 0.230180904620442 0.235018450649996 0.231722047092445 0.227748964122739 1 1|0 +|/ 17070548 17071447 17071000.75 17067692 17071702 + gene protein_coding_gene FALSE TRUE AT1G45130.1 beta-galactosidase, putative / lactase, putative similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.2); similar to BGAL12 (beta-galactosidase 12), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G26140.1); similar to beta-galactosidase [Cicer arietinum] (GB:CAA10128.1); similar to putative beta-galactosidase BG1 [Vitis vinifera] (GB:AAK81874.1); similar to beta galactosidase [Vigna radiata] (GB:AAF67342.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.239086089694465 -2.98820491693032 0.0164545686334886 1 3.87476006477669 9.39838043780082 -0.239086089694465 0.0618758943089865
AT4G20270_at 5.16773317214759 5.34523700810424 4.44229798956342 4.02309814231154 4.50948095582858 4.60085727740589 4.65431636373904 5.13771591679367 4.88492836328461 5.03354002044875 5.25516754112631 6.06882570998319 4.28665253527209 5.26461569423059 6.16669011797821 5.26420568576055 4.24188612410339 5.2938134691133 5.60387961144555 0.234287031375966 0.248654430955087 0.242779529283830 0.248955531141009 0.247863086334561 0.241221937679711 0.246955983490543 0.24492948886631 0.245445790638592 0.234287031375966 0.234287031375966 0.241701849949750 0.234287031375966 0.239228088301505 0.237947628744023 0.236013434980865 0.245761707008515 0.243209811017518 0.238579481474376 4 4 + 10952214 10952910 10952593 10949671 10953093 + gene protein_coding_gene FALSE TRUE AT4G20270.1 BAM3 (big apical meristem 3); ATP binding / protein serine/threonine kinase Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to CLV1 (CLAVATA 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G75820.1); similar to receptor-like protein kinase 1 [Glycine max] (GB:AAF91322.1); similar to receptor-like protein kinase 3 [Glycine max] (GB:AAF91324.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79572.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.313100456307895 -2.98723629994752 0.0164795372383125 1 3.87337860109047 9.9372661572812 -0.313100456307895 0.115993221820286
AT3G47520_at 8.19162041430157 8.30369030805067 8.29072427830526 8.18474136782696 8.0901184199662 7.84185130680938 8.72386913804499 8.98503692585882 7.59822271977322 7.79872763567892 8.38516956053319 9.10359666528722 8.32856508618988 8.34214769819278 8.53929178922287 8.57284132484988 8.56834998806641 8.3168271853084 7.33983321654426 0.180109028146225 0.170597046770808 0.177853488671831 0.186604636982619 0.174852132653461 0.170782206071820 0.187788848250013 0.166221715039099 0.183129330426838 0.178662001811168 0.177734886349589 0.169262045595345 0.170865339190179 0.175519820713665 0.187767003212146 0.167282140926925 0.189153186252276 0.187283586107752 0.188078152798581 3 3 + 17525254 17525669 17525519 17524259 17526026 + gene protein_coding_gene FALSE TRUE AT3G47520.1 MDH (malate dehydrogenase); malate dehydrogenase Encodes a protein with NAD-dependent malate dehydrogenase activity, located in chloroplasts. Identical to Malate dehydrogenase, chloroplast precursor (EC 1.1.1.37) (pNAD-MDH) [Arabidopsis Thaliana] (GB:Q9SN86;GB:O81844); similar to malate dehydrogenase (NAD), mitochondrial [Arabidopsis thaliana] (TAIR:AT1G53240.1); similar to malate dehydrogenase (NAD), mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT3G15020.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to malate dehydrogenase [Citrus junos] (GB:ABI75147.1); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) 0.245737725768565 2.98671897206866 0.0164928887686307 1 3.87264074797871 16.3757197796647 0.245737725768565 0.0678315147985677
AT1G31440_at 8.34071440352434 8.72454534345912 8.93911371981445 9.21928325964689 9.4911332967807 9.20655420830065 9.36481053710946 9.44235483816663 8.35618061771895 8.73884330116414 8.98049639442004 8.82678275196875 9.24560457697485 8.78452574800822 8.50921384083704 9.25691743419087 8.75665103359753 8.93051483587422 8.67298161641153 0.169208101152 0.159750134836838 0.16567287281859 0.167743645768898 0.159881001024189 0.167994283785947 0.162519835988094 0.169212199064097 0.173586690958896 0.158097708341143 0.160208667094455 0.156853633180197 0.161518775870608 0.164726186564972 0.169355318876907 0.161487222031209 0.188932641461428 0.168510521761013 0.158095318618391 1 1|0 -|/ 11256187 11256968 11256588.2 11255817 11258696 - gene protein_coding_gene FALSE TRUE AT1G31440.1 SH3 domain-containing protein 1 (SH3P1) similar to SH3 domain-containing protein 2 (SH3P2) [Arabidopsis thaliana] (TAIR:AT4G34660.1); similar to Os03g0266700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049658.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06881.1); contains InterPro domain Src homology-3; (InterPro:IPR001452) 0.283958994561592 2.98660054764668 0.0164959467172745 1 3.87247183912592 17.841400453558 0.283958994561592 0.0967899449714432
AT4G17260_at 6.04312104572573 6.32353931069328 5.51410253870592 6.01481521627252 6.12869197026966 6.08912507114416 6.43415118777494 6.19999995501581 4.77738824313755 4.69179898104287 5.01985240451234 5.82175694649703 5.1458221079169 5.37732180711673 6.49932809705844 4.58335177138054 5.50471871089994 5.5340091905915 4.09910379010504 0.169767921065355 0.176551711725308 0.173492919068528 0.162482616375375 0.162841664293684 0.185427683546605 0.173786738504239 0.168214451261765 0.168937825063646 0.167997656304905 0.169521352865936 0.164291715313092 0.162482616375375 0.167306286873239 0.170298498797793 0.166094309778642 0.168896630255107 0.162482616375375 0.175320977651256 4 4 + 9674562 9675086 9674824.364 9674004 9675461 + gene protein_coding_gene FALSE TRUE AT4G17260.1 L-lactate dehydrogenase, putative similar to PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G22780.1); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2) [Arabidopsis thaliana] (TAIR:AT5G09660.2); similar to L-lactate dehydrogenase, putative [Brassica oleracea] (GB:ABD65114.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain L-lactate dehydrogenase; (InterPro:IPR011304); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557) 0.299743641181908 2.98555285806636 0.0165230256799808 1 3.87097747378926 11.0727101874128 0.299743641181908 0.107480729538437
AT1G70730_at 10.0879685649073 9.95547077987866 10.0211079917486 9.95746157485692 10.0433033649865 9.87926105420234 10.8334014113313 10.7354306949352 10.0452774778318 10.2690214636949 10.1007007660437 10.0325302324505 9.8946575151555 10.1212599310013 10.2084035986759 10.2066178192817 10.2256093851912 10.0675975173956 10.0407272024013 0.072119856086505 0.0731378071596032 0.0736877596847995 0.0760050704251703 0.0731417984344533 0.0744346039123692 0.072119856086505 0.0746733515343107 0.0779470569499164 0.0744081449322756 0.0739003721107538 0.0727870159376406 0.0795386620783944 0.0747958476990965 0.0756204037711793 0.072119856086505 0.0786533827799469 0.0757500720711768 0.0749825392087492 1 1|0 -|/ 26672705 26673565 26673161.889 26672527 26676441 - gene protein_coding_gene FALSE TRUE AT1G70730.1 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative Identical to Probable phosphoglucomutase, cytoplasmic 2 (EC 5.4.2.2) (Glucose phosphomutase 2) (PGM 2) [Arabidopsis Thaliana] (GB:Q9SGC1); similar to phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative [Arabidopsis thaliana] (TAIR:AT1G23190.1); similar to PGM (PHOSPHOGLUCOMUTASE) [Arabidopsis thaliana] (TAIR:AT5G51820.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9ZSQ4); similar to cytosolic phosphoglucomutase [Populus tomentosa] (GB:AAR83345.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9SM60); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; (InterPro:IPR005845); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; (InterPro:IPR005844); contains InterPro domain Phosphoglucomutase/phosphomannomutase C terminal; (InterPro:IPR005843); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; (InterPro:IPR005846); contains InterPro domain Phosphoglucomutase/phosphomannomutase; (InterPro:IPR005841) -0.219477159320549 -2.98474027708759 0.0165440596276693 1 3.86981839875003 20.3019327514185 -0.219477159320549 0.0417182610714431
AT3G28460_at 6.1600902876988 6.25201652765499 5.3081650187618 5.18106530572045 6.15964417111639 6.23026119208518 7.05104443707552 7.15229214999052 6.21937080116097 6.59423258793181 6.94117392781788 7.46161566068318 6.50995445052665 6.72159717251327 7.38031134431448 6.73424243041812 6.76783410376605 6.23595507352488 6.20072843026286 0.252030232776547 0.230620739216509 0.238799466666339 0.242972641537623 0.23687740719045 0.247285452559387 0.252561170863468 0.236947637037746 0.239528683431015 0.243316760671408 0.233771634389648 0.239598180582908 0.241653343522052 0.236525154060783 0.230887801539189 0.230620739216509 0.255583318541934 0.247572468904489 0.23921348713221 3 0|3 /|- 10673948 10674729 10674332.875 10673278 10675632 - gene protein_coding_gene FALSE TRUE AT3G28460.1 similar to Conserved hypothetical protein 95 [Medicago truncatula] (GB:ABE78634.1); contains InterPro domain Conserved hypothetical protein 95; (InterPro:IPR004398) -0.214051007345161 -2.9837376655659 0.0165700507925212 1 3.86838819541828 12.7779204497117 -0.214051007345161 0.0345427832244411
AT1G35710_at 11.0850258517073 10.7708339386184 12.1954791359743 11.6890767751156 11.0563068455274 10.2007440005982 8.85579167511812 7.93363971193096 10.4981887709005 9.02012358180644 8.74407058310706 9.05347273808344 8.6624485989517 9.21597908613287 8.10791925718792 9.80241264666957 9.39188293441805 9.92148238543465 9.47860232877212 0.116300964731356 0.116300964731356 0.117903363799343 0.123137261744954 0.118587354713889 0.116507350308980 0.120041031357479 0.123536400877261 0.125456015595953 0.120528849362591 0.124924005512174 0.116885149437962 0.132295064919851 0.127428948330835 0.132624005797331 0.116300964731356 0.121654454487273 0.120237264292321 0.116740690356528 1 1|0 +|/ 13224919 13225574 13225225.2 13222152 13225893 + gene protein_coding_gene FALSE TRUE AT1G35710.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G08850.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G17230.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G63930.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE80260.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82661.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.535449598274337 2.98341495979696 0.0165784254338950 1 3.86792784711998 19.8624106197777 0.535449598274337 0.240882639360123
AT1G53310_at 10.3322159317741 10.3811781533582 10.2316563514169 10.3940499625171 9.69741774371236 9.68418667433055 9.8017904438428 9.61787498942997 8.81887963220862 9.04658395185369 9.37588025330831 9.56983642527997 9.13606753699847 9.45579969799338 9.38570094397205 9.21738105893933 9.34634736866654 9.28423508213329 8.7559225185113 0.107182144793964 0.106892247211270 0.109740409305043 0.107701937197723 0.108027995887607 0.107787857100990 0.107525597498811 0.108192348571537 0.115291105439541 0.115881603014088 0.105511524357465 0.105511524357465 0.113491154859793 0.105511524357465 0.115832103689553 0.106757177022621 0.105785439860714 0.109965582648879 0.117376027572304 1 1 - 19887993 19888571 19888256.818 19887695 19892037 - gene protein_coding_gene FALSE TRUE AT1G53310.1|AT1G53310.2|AT1G53310.3 ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 1 (EC 4.1.1.31) (PEPCase 1) (PEPC 1) (AtPPC1) (PPC1) [Arabidopsis Thaliana] (GB:Q9MAH0;GB:Q546E4); similar to ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT2G42600.1); similar to ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT3G14940.1); similar to phosphoenolpyruvate carboxylase [Brassica juncea] (GB:CAA11415.1); similar to phosphoenolpyrovate carboxylase [Brassica juncea] (GB:CAA11414.1); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AAB80714.1); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) 0.220586740889915 2.98158406425433 0.0166260226150788 1 3.86531588281281 19.1276469880157 0.220586740889915 0.0433566485503495
AT3G16190_at 8.74126657260439 8.58427502208116 8.93168102831869 8.79511555541924 9.3306176274666 8.83448618672323 8.73054908058451 8.51947323906144 7.14915493752473 8.01015646098212 8.18622456288377 7.48863926303128 8.11887270860247 8.03566128427071 7.53610638017836 7.94418598173408 8.43441711247566 7.95552379164363 7.98678092646008 0.174028306148658 0.17375034068881 0.184205490693473 0.1799699702242 0.184328329142783 0.191530569499896 0.173792599861357 0.176830400916085 0.207721046192597 0.192505129161414 0.183614951619925 0.181040879609128 0.171829957724282 0.182715170056324 0.179879595851881 0.182396076787925 0.178570297822221 0.186045779081363 0.183101346574462 3 3|0 -|/ 5489911 5491169 5490470.3 5489707 5491254 - gene protein_coding_gene FALSE TRUE AT3G16190.1 isochorismatase hydrolase family protein similar to isochorismatase hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G23220.1); similar to isochorismatase hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD21815.1); similar to Os02g0276400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046544.1); contains InterPro domain Isochorismatase hydrolase; (InterPro:IPR000868) 0.288086949089627 2.98063436944279 0.0166507672091893 1 3.86396094780652 16.6473420359948 0.288086949089627 0.100012405037424
AT1G26180_at 7.21558469254234 7.43284020111441 6.66738837401586 7.10097042604521 7.77390276157539 7.53086501906903 7.58760373453255 7.4989204350609 7.3502393329247 7.48061042806796 7.10762056241108 7.25059564998207 6.89747321975597 7.14218088425686 7.426514565285 7.34309930182186 6.64718515685639 6.84995263096413 7.60746418789673 0.239736598836437 0.218429524378363 0.249306536431299 0.234740895306239 0.218429524378363 0.234561561313662 0.218429524378363 0.231152154132133 0.242453221098203 0.225179773570127 0.224253589773205 0.227683571479379 0.244155417193838 0.218429524378363 0.218429524378363 0.231378551836149 0.250607201607669 0.255654340230585 0.224437731117442 1 1 + 9055089 9056472 9055977.857 9054731 9056839 + gene protein_coding_gene FALSE TRUE AT1G26180.1 similar to Os02g0326000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046704.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54160.1) -0.280907928591319 -2.97975486382693 0.0166737170001452 1 3.86270609389091 14.6322673201844 -0.280907928591319 0.0951211175969193
AT1G77370_at 8.88422774916757 9.34928313027596 9.57935200440208 9.79280605683075 10.1393723033406 9.56310656920608 9.09272674648968 8.74583663016482 8.47171907761255 8.62593920369679 8.65049109272238 8.34940239977397 8.65104514455708 8.55360499285465 7.89966189563027 8.71323804286384 8.95748570904053 8.49646214622135 8.5837785177666 0.126906619940478 0.125301630848034 0.136612617125070 0.129280461545817 0.132151282875009 0.125521916388303 0.131075007478133 0.124125504862847 0.127646625458368 0.124325517293282 0.123715452491742 0.122921688943328 0.122987682750320 0.150769917133844 0.137498014535516 0.122790079620224 0.130869553247314 0.123690333506423 0.125009400647290 1 1|0 +|/ 29078846 29079484 29079040.3 29078737 29079690 + gene protein_coding_gene FALSE TRUE AT1G77370.1 glutaredoxin, putative Identical to Glutaredoxin-C3 precursor (AtGrxC3) (GRXC3) [Arabidopsis Thaliana] (GB:Q9FVX1); similar to glutaredoxin, putative [Arabidopsis thaliana] (TAIR:AT5G20500.1); similar to hypothetical protein [Thellun (GB:ABB45843.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin, eukaryotic and viruses; (InterPro:IPR011899); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.362042832176528 2.97948939094513 0.0166806506717369 1 3.86232731365302 17.9405403292263 0.362042832176528 0.146254647585356
AT4G24350_at 6.90180936534906 6.93851586007299 5.04238580645703 4.73527440409666 5.60923494164578 5.49374584838062 7.52337445825407 7.21722963914333 3.9734008927011 6.29527369889934 6.63956376961749 6.81288806828874 6.76536433875779 6.80305900706992 6.60271583837919 6.8688962328188 6.41503737646916 6.19016597220674 5.41245194563037 0.249429163083870 0.240299122331001 0.241579523349406 0.242102873629848 0.249371308576977 0.249458329975394 0.240901934899959 0.245477052310845 0.248644358932246 0.235122347024003 0.234706762836617 0.236089944014379 0.235457859534407 0.241272132380583 0.236851495525700 0.242259949197443 0.249299319712899 0.251780520259689 0.248802681211771 4 4|0 +|/ 12609746 12610760 12610107.889 12609538 12611477 + gene protein_coding_gene FALSE TRUE AT4G24350.1 phosphorylase family protein similar to phosphorylase family protein [Arabidopsis thaliana] (TAIR:AT4G24340.1); similar to Os05g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054970.1); similar to Os06g0112100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056591.1); similar to vegetative storage protein [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAA16342.1); contains InterPro domain Purine and other phosphorylases, family 1; (InterPro:IPR000845) -0.257451467092901 -2.97883588791315 0.0166977317073637 1 3.86139486516418 12.1148230426889 -0.257451467092901 0.0779182656896123
AT1G14670_at 8.76803646039537 9.00423873466679 8.18159772824278 8.38175019727788 8.62651481481795 8.02810358637924 8.76355699844 8.90126306011248 9.15963560414849 8.32600985663564 9.01671339506323 9.2313927137326 8.61362619974625 8.64828509825205 8.75123529040405 8.24138320896114 7.65939017829935 8.6372923483395 8.55125172140627 0.182576245100363 0.168637212828151 0.177150413684790 0.171945468523204 0.174078801063411 0.195261779876782 0.169530733637746 0.168637212828151 0.175729599075359 0.181521286299209 0.170908520459453 0.168637212828151 0.175392463524757 0.178243764574225 0.176005429728098 0.177112299444582 0.187526960127653 0.183089791592461 0.178158220458624 1 1 + 5039540 5040155 5039874.091 5037607 5040523 + gene protein_coding_gene FALSE TRUE AT1G14670.1 endomembrane protein 70, putative similar to transporter [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT2G01970.1); similar to Putative endosomal protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52585.1); similar to putative syntaxin SYP111 [Oryza sativa (japonica cultivar-group)] (GB:BAC57816.1); similar to Endosomal membrane proteins, EMP70 (ISS) [Ostreococcus tauri] (GB:CAL57055.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) -0.316916577510611 -2.97826803800323 0.016712588670817 1 3.86058460553005 17.2213229632898 -0.316916577510611 0.119007200130228
AT1G77710_at 10.3801942278041 10.4785375975497 10.7291346480383 10.6837032077326 10.6110345833481 10.5524158414799 10.3231772485671 10.5521985611843 9.9973298165683 10.4453401000974 10.5612284582355 10.3139906820102 10.3635487116603 10.5714692052831 10.2710955191479 10.6183963309972 10.5208435212068 10.2102406673374 10.145501899419 0.0854155035878163 0.085814650530092 0.088134855789952 0.0833284789910512 0.0964416809494383 0.0883823340109452 0.0890268967228094 0.090559470788315 0.101277308508982 0.0873190376338546 0.0847249689727304 0.0847375689077384 0.0922362828546051 0.0874486780715548 0.0856092899674242 0.0836049499690534 0.0905824428030906 0.0903780721760909 0.087898314103864 1 1|0 +|/ 29211646 29212758 29212186.25 29211529 29213039 + gene protein_coding_gene FALSE TRUE AT1G77710.1 Identical to Probable ubiquitin-fold modifier 1 precursor [Arabidopsis Thaliana] (GB:Q9CA23); similar to Os01g0962400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045478.1); similar to Probable ubiquitin-fold modifier 1 precursor (Protein PR46A) (GB:Q94EY2); similar to Probable ubiquitin-fold modifier 1 precursor (Protein PR46A) (GB:Q5PU89); contains InterPro domain Protein of unknown function UPF0185; (InterPro:IPR005375) 0.221669763164990 2.97745488758681 0.0167338873907832 1 3.8594242885235 20.8512539439695 0.221669763164990 0.0450016508878634
AT4G00550_at 5.86262041690468 6.54292773915716 6.52121674437686 6.54864582478423 6.64522695285596 5.53057823814825 5.48175615165635 5.5402136560006 4.95429055856216 4.20833588135743 5.356205137636 4.84406891187771 5.69086494297046 5.36786692783534 3.92527908990856 5.73539693872684 5.51082408368406 5.00377731314474 4.70094821426251 0.226614854216545 0.224170026662723 0.225790847252561 0.225695385105584 0.227139483952507 0.250327325744381 0.224969811256694 0.221972817562687 0.237032581997016 0.223434037429908 0.223517306820755 0.22958020221677 0.221591943799811 0.222408606818929 0.236142213108016 0.226431932441053 0.223051097736720 0.227281744374173 0.227144546434260 4 4 - 238184 238645 238414.364 237967 240500 - gene protein_coding_gene FALSE TRUE AT4G00550.1 DGD2 (digalactosyldiacylglycerol synthase 2); UDP-galactose:MGDG galactosyltransferase/ transferase, transferring glycosyl groups encodes a UDP-galactose-dependent digalactosyldiacylglycerol(DGDG) synthase. Located in chloroplast outer membrane. Identical to Digalactosyldiacylglycerol synthase 2, chloroplast (EC 2.4.1.241) (DGD2) [Arabidopsis Thaliana] (GB:Q8W1S1;GB:O65264;GB:Q56ZV5;GB:Q8W1S0); similar to DGD1 (DIGALACTOSYL DIACYLGLYCEROL DEFICIENT 1), galactolipid galactosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11670.1); similar to Digalactosyldiacylglycerol synthase 2, chloroplast (GB:Q6DW75); similar to Digalactosyldiacylglycerol synthase 2, chloroplast (GB:Q6DW73); similar to Os03g0214400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049371.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.50631565797028 2.97531932366001 0.0167899577475499 1 3.85637674054072 10.984386700294 0.50631565797028 0.226260581060269
AT1G20450_at 10.2531136792403 10.2976006994071 9.5793551733021 9.68139144412744 10.2578732286754 9.95217742560877 10.4612553983458 10.4915023005228 8.88848292610858 9.42139406774308 10.2392518941909 10.3411471078808 10.2189507379010 10.0730022931748 9.99147156497181 10.5123182969881 9.32019230862285 10.1626210569244 9.09370908494487 0.107244653489605 0.101545920798190 0.11717340428833 0.115563019834094 0.109304069805226 0.113782448573023 0.104801281718812 0.107614409037729 0.114427803136805 0.104667110178175 0.108376175925964 0.108085663825840 0.104028826549238 0.109871768021585 0.106398959452507 0.107002356452092 0.116581986647526 0.106219653573448 0.112353354467297 1 1 - 7088256 7088534 7088398.455 7087993 7089596 - gene protein_coding_gene FALSE TRUE AT1G20450.1|AT1G20450.2 ERD10/LTI45 (EARLY RESPONSIVE TO DEHYDRATION 10) Encodes a gene induced by low temperature and dehydration. Inhibits e.coli growth while overexpressed. Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. LTI29 and LTI30 double overexpressors confer cold tolerance. Localized to membranes and cytoplasm. Identical to Dehydrin ERD10 (Low-temperature-induced protein LTI45) (ERD10) [Arabidopsis Thaliana] (GB:P42759;GB:Q8H7D3;GB:Q94AF8;GB:Q94KJ0); similar to COR47 (cold regulated 47) [Arabidopsis thaliana] (TAIR:AT1G20440.1); similar to dehydrin [Brassica napus] (GB:AAR23753.1); contains InterPro domain Dehydrin; (InterPro:IPR000167)|Identical to Dehydrin ERD10 (Low-temperature-induced protein LTI45) (ERD10) [Arabidopsis Thaliana] (GB:P42759;GB:Q8H7D3;GB:Q94AF8;GB:Q94KJ0); similar to COR47 (cold regulated 47) [Arabidopsis thaliana] (TAIR:AT1G20440.1); similar to dehydrin [Brassica napus] (GB:AAR23753.1); contains InterPro domain DNA topoisomerases I, dispensable insert, eukaryotic-type; (InterPro:IPR009054); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.232336006599526 2.97455392659499 0.0168101009488051 1 3.85528440426032 19.7427327189107 0.232336006599526 0.0565428922795589
AT2G03070_at 4.74667323203948 4.85222364696513 5.02166526174979 4.79845577822079 5.50257599196402 5.16894465115876 5.43685794093573 5.13702015195419 4.97926400114351 4.40065097051493 3.92845337929163 3.95688043899267 4.24997537216772 4.05415191697664 4.06716499316574 4.21662558304544 4.18505509001415 4.0798912990175 4.76355058602917 0.228740081328580 0.224205827864489 0.229869276005576 0.225230911531464 0.236005850965495 0.234536779305516 0.224504970673266 0.228785194524567 0.230322120207975 0.223541266195021 0.233827960648277 0.223903956730498 0.224237432863269 0.225356199312083 0.228706040909949 0.223541266195021 0.233419804574519 0.228162157591986 0.22962952524344 2 2|0 +|/ 907528 908722 908129 905618 909069 + gene protein_coding_gene FALSE TRUE AT2G03070.1 similar to NPH4 (NON-PHOTOTROPHIC HYPOCOTYL), transcription factor [Arabidopsis thaliana] (TAIR:AT5G20730.3); similar to hypothetical protein Os03g31010 [Oryza sativa (japonica cultivar-group)] (GB:AAP20836.1) -0.271248541172781 -2.97421049479858 0.0168191472801903 1 3.85479426204404 9.48643372103006 -0.271248541172781 0.0886093846627104
AT2G31450_at 5.46610231953016 5.05295219457214 5.31085802382524 5.10352718661588 5.30728345265353 5.17317805720866 6.37569257830681 5.96183412068631 4.93192545755229 5.10340160413939 5.15520825297811 5.03982040992703 5.00293130833745 5.0346206574485 5.06456274327425 5.41799219338598 4.66734825405274 4.9672279528426 5.43734823479959 0.214302623579347 0.210541791880806 0.21051283130224 0.218237427372051 0.204348465431348 0.209095623957622 0.20217023556997 0.209822093287188 0.222980284280290 0.211064120796756 0.207612140783398 0.200719957018749 0.204333630747721 0.203197514881437 0.205647040889209 0.200719957018749 0.213813833793181 0.210168208569297 0.200719957018749 2 0|2 /|- 13408457 13409396 13408917.625 13408209 13411299 - gene protein_coding_gene FALSE TRUE AT2G31450.1|AT2G31450.2 endonuclease-related|DNA binding / endonuclease/ iron ion binding similar to endonuclease-related [Arabidopsis thaliana] (TAIR:AT1G05900.2); similar to Endonuclease III-like protein 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92590.2); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain Endonuclease III, FCL; (InterPro:IPR004035); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.302139041915475 -2.97344263240075 0.0168393917589088 1 3.85369834656630 10.5695646935221 -0.302139041915475 0.109851166963738
AT1G77260_at 8.08384626010257 8.15399689693988 7.72110380624512 7.8160286868402 7.54894018274406 7.78485159657935 8.50067054723223 8.21262543329551 8.18031436243244 8.6277258996189 8.70464789980948 8.91597051905166 8.68153224345551 8.387542522263 8.48868331390013 8.41791170600249 8.16702682748038 8.43358685438919 8.6711001054662 0.129986749292396 0.129986749292396 0.140692085420555 0.134388332986943 0.137144174480208 0.137643243020909 0.129986749292396 0.132550183113916 0.140285441850104 0.136223118252651 0.143225858651294 0.131994189723843 0.136950325393425 0.138777173084230 0.133273991057074 0.134112370629011 0.142410757261037 0.135097947018934 0.138195013718445 1 1|0 -|/ 29028867 29029399 29029167.6 29028666 29031851 - gene protein_coding_gene FALSE TRUE AT1G77260.1 dehydration-responsive protein-related similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G39750.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G06050.1); similar to Os01g0883900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045015.1); similar to Os01g0846600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044791.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.244243884834449 -2.97194949071977 0.0168788302409928 1 3.85156717140597 16.4865876887306 -0.244243884834449 0.0675924197149194
AT1G64750_at 7.40055845573478 7.7407170988673 7.34583423590438 7.64780170090006 8.00552050975443 7.42137750931543 6.90023652379532 7.1349297429723 7.26304876458565 6.73813747346097 7.64490575381011 7.31846927830298 7.09395055281278 7.34799853593908 7.55318283471517 7.5221147518242 7.30372907346075 6.96171223418696 6.91603436892971 0.170913739646511 0.167226381739923 0.165034052132399 0.168947332935606 0.162463390567511 0.170606377824430 0.163748807752394 0.167808689596789 0.175822623508831 0.162372429959906 0.170042544051215 0.160975693082225 0.160001835047961 0.16323188702496 0.168702355969466 0.167222669623220 0.167446451124454 0.164881080878443 0.164099750849642 1 1 - 24056473 24057347 24057099.273 24056180 24057568 - gene protein_coding_gene FALSE TRUE AT1G64750.1|AT1G64750.2 ATDSS1(I) Identical to Probable 26 proteasome complex subunit sem1-1 [Arabidopsis Thaliana] (GB:Q9XIR8); similar to ATDSS1(V) (ARABIDOPSIS DSS1 HOMOLOG ON CHROMOSOME V) [Arabidopsis thaliana] (TAIR:AT5G45010.1); similar to Os01g0316800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042880.1); similar to Os01g0273000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042712.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAA90391.1); contains InterPro domain DSS1/SEM1; (InterPro:IPR007834) 0.340937020757770 2.96959511568282 0.0169412108136988 1 3.84820642882445 14.6074543450923 0.340937020757770 0.134404128158743
AT3G23070_at 6.49319958790878 6.66391073187508 5.94471900163334 5.5698612400306 7.01418960855274 5.95627577861632 7.19295123969222 7.10044833893907 5.86615741366048 6.74427790462287 6.11681627014435 6.66026815798427 6.37805478874102 6.43980320174925 6.58362939162711 6.72831569263996 5.7915767714617 5.85045560920554 6.82682868424261 0.166682050307689 0.166709191220206 0.181354803649036 0.17193799260616 0.165284730867664 0.179032243406412 0.163872044524167 0.163872044524167 0.188141190840836 0.168774743368200 0.167178133880562 0.167434448487118 0.166459849799418 0.165665392217021 0.172698100573353 0.165174680624357 0.176921535534366 0.169999844156549 0.169952795742836 3 3|0 +|/ 8206386 8207225 8206675.5 8203476 8207426 + gene protein_coding_gene FALSE TRUE AT3G23070.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14510.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to Os11g0592400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068192.1); similar to CRS1/YhbY domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94534.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890); contains InterPro domain Calycin-like; (InterPro:IPR011038) -0.450919541396685 -2.96798843922184 0.0169839175490465 1 3.84591276088153 12.8907959340491 -0.450919541396685 0.197115194645926
AT2G29960_at 8.90901023739916 8.90316407618638 8.73620761138024 8.92035440919433 9.48194177125973 9.0478203673986 9.20891433306688 9.0941942772741 8.18671481143198 8.54983584770298 9.2719462161298 9.15340444481951 8.76656438422341 8.96924795345288 9.30276963993724 8.71733390804203 8.44407223132902 8.513012434976 8.40745240000695 0.138253378813849 0.145162114666325 0.139711833794037 0.137696800961629 0.140965090401651 0.140797859027597 0.141970484508418 0.143817077558322 0.150605119326081 0.138380894991956 0.134558091649522 0.134558091649522 0.139046708510474 0.135311531231530 0.134558091649522 0.136584701708074 0.140153744804448 0.144412935239409 0.144328005893684 2 2|0 -|/ 12776262 12777569 12776774.3 12776110 12777656 - gene protein_coding_gene FALSE TRUE AT2G29960.1|AT2G29960.2 CYP5 (cyclophilin 5); peptidyl-prolyl cis-trans isomerase|CYP5 (cyclophilin 5) encodes a cyclophilin protein that exhibits peptidylprolyl cis/trans-isomerase and protein refolding activities that were sensitive to cyclosporin A. The protein interacts with GNOM in vitro and is localized to both the cytosolic and membrane fractions. The gene is expressed in the developing embryo. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-4 precursor (EC 5.2.1.8) (PPIase CYP19-4) (Rotamase CYP19-4) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) (CYP19-4) [Arabidopsis Thaliana] (GB:Q8LDP4;GB:O22515;GB:O80876); similar to ROC7 (rotamase CyP 7), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G58710.1); similar to putative cyclophilin [Oryza sativa (japonica cultivar-group)] (GB:BAD53621.1); similar to Os06g0708500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058535.1); similar to cyclophilin [Triticum aestivum] (GB:AAP76508.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130)|Identical to Peptidyl-prolyl cis-trans isomerase CYP19-4 precursor (EC 5.2.1.8) (PPIase CYP19-4) (Rotamase CYP19-4) (Cyclophilin of 19 kDa 4) (Cyclophilin-5) (CYP19-4) [Arabidopsis Thaliana] (GB:Q8LDP4;GB:O22515;GB:O80876); similar to ROC7 (rotamase CyP 7), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G58710.1); similar to Os06g0708500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058535.1); similar to cyclophilin [Triticum aestivum] (GB:AAP76508.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.264359928696516 2.96716104419381 0.0170059537950948 1 3.84473151300951 17.6745150127254 0.264359928696516 0.0839923810754812
AT4G28600_at 6.66936044597352 6.56328826031579 6.40664943907636 6.23579497371443 6.06032623463302 6.41054871239955 5.3626803573722 6.40654585686516 6.15835664109705 6.07303400873217 7.1570897834902 7.1260665326183 7.3671587597343 7.14855201543437 6.68807891770888 7.04895721608387 6.76405437737823 5.90595648183353 5.88722058973981 0.182259528525055 0.182259528525055 0.186628796851564 0.202878201385714 0.193704931279936 0.182259528525055 0.194586660470226 0.190075463602619 0.193781609018199 0.198725712176577 0.186029567253994 0.18748639899414 0.184712022715543 0.194631444020783 0.189749561450183 0.189150231164553 0.189401072939973 0.186330214897984 0.186015868673508 4 4 + 14131870 14132553 14132283.182 14129421 14132805 + gene protein_coding_gene FALSE TRUE AT4G28600.1 NPGR2 (NO POLLEN GERMINATION RELATED 2); calmodulin binding encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. similar to NPG1 (NO POLLEN GERMINATION 1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G43040.1); similar to Os03g0138000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048906.1); similar to Os10g0471400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064828.1); similar to calmodulin-binding protein MPCBP [Zea mays] (GB:AAG12459.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.44453164525152 2.96715515914306 0.0170061106392081 1 3.84472311092135 12.7345374552395 0.44453164525152 0.193693980486757
AT2G42890_at 8.82720783557254 8.77218742564716 9.10221616726824 9.09142502150008 9.42731022942879 9.17000973278441 7.77778894717075 8.10411889181042 8.27573503438414 8.03186380500469 7.612560758968 7.19045163695987 8.30447369896592 7.92990691725938 7.01183656861953 8.38668949693862 8.07494173239394 8.10830229682333 8.15820183852679 0.166999746516080 0.159337577962060 0.165754460576610 0.165535300055210 0.165130266204632 0.159404410461532 0.164549295762723 0.166564705819641 0.156679328019055 0.167112730835465 0.156466631466796 0.163566244365731 0.162552133587992 0.167492299335018 0.179274993060409 0.154063504926608 0.176602208441286 0.155873375128457 0.161259049450968 2 2|0 +|/ 17860476 17861257 17860870.333 17856896 17861609 + gene protein_coding_gene FALSE TRUE AT2G42890.1|AT2G42890.2|AT2G42890.3 AML2; RNA binding|AML2 A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices. similar to AML5 (ARABIDOPSIS MEI2-LIKE PROTEIN 5), RNA binding [Arabidopsis thaliana] (TAIR:AT1G29400.2); similar to AML1 [Medicago truncatula] (GB:AAT38998.1); similar to AML1 [Citrus unshiu] (GB:AAT39004.1); similar to AML5 [Medicago truncatula] (GB:AAT38999.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA recognition motif 2; (InterPro:IPR007201); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.249771504211349 2.96714560647753 0.0170063652331216 1 3.84470947257367 16.7753641719001 0.249771504211349 0.0725671821592537
AT1G09760_at 6.66177163831797 6.7037260340526 6.16724961433176 6.18685043425309 6.84462922079254 6.67719096513694 6.64209991729619 6.44605298047583 4.75158488981602 4.91127142390415 5.3955304595796 5.7398157667709 5.17702399816424 5.02896530058081 5.61683930904276 5.48417826796093 5.79038661233388 5.5532969697352 4.99678059281753 0.233946018173966 0.231560852134313 0.238790311462944 0.235845244960122 0.237066448587474 0.244724270869674 0.236587216125627 0.239539570533277 0.243688747890063 0.234587317444191 0.231560852134313 0.232746863261723 0.241021670273762 0.236711806148323 0.23645784453533 0.233411357531931 0.245437330517602 0.232449771355539 0.233848305118096 1 1|0 -|/ 3159602 3160951 3160188.375 3159127 3161694 - gene protein_coding_gene FALSE TRUE AT1G09760.1 U2A' (U2 small nuclear ribonucleoprotein A); protein binding Identical to U2 small nuclear ribonucleoprotein A' (U2 snRNP-A') [Arabidopsis Thaliana] (GB:P43333;GB:O04497); similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G50690.1); similar to unknown [Solanum tuberosum] (GB:ABA81870.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, C-terminal associated; (InterPro:IPR003603); contains InterPro domain Leucine-rich repeat, SDS22; (InterPro:IPR007092) 0.221138183050706 2.96653110151235 0.0170227510669223 1 3.84383212994533 11.7210964610989 0.221138183050706 0.045330523573557
AT1G30120_at 9.4825567148714 9.91803185961271 9.6237091073034 9.67584533563298 9.77326391595362 9.53590396075747 10.7353531957425 10.7918533961195 10.4069553522086 10.4722215484770 10.7982069390714 10.4844009142988 10.2758731819657 10.5098442904737 10.4444418981409 10.3399411290671 9.77447318944213 10.5057438740734 10.1645372246685 0.104745219330786 0.103710518933149 0.107847230565452 0.103590313358232 0.101411053601307 0.107657367217371 0.101041030500081 0.103145073117832 0.109174258497594 0.100632970657876 0.100156566251162 0.100263147506574 0.099126243574694 0.106896905866576 0.103332713939123 0.103201861732969 0.118732066764840 0.104293230871868 0.102397258502218 1 1 - 10584356 10584887 10584608.909 10584144 10586619 - gene protein_coding_gene FALSE TRUE AT1G30120.1 PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA); pyruvate dehydrogenase (acetyl-transferring) Encodes a putative plastid pyruvate dehydrogenase E1 beta subunit that is distinct from the mitochondrial pyruvate dehydrogenase E1 beta subunit. similar to transketolase family protein [Arabidopsis thaliana] (TAIR:AT2G34590.1); similar to Os12g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067285.1); similar to Pyruvate dehydrogenase E1 component beta subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97865.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) -0.268028621529665 -2.96517301147172 0.0170590226237578 1 3.84189306041668 20.3118248785082 -0.268028621529665 0.0868535840374882
AT1G17620_at 4.05019250331262 4.59118200705602 4.14161403765917 4.74551593021501 3.86272513724268 4.67964570134205 4.36182834650245 4.77595502634372 5.4376781128092 4.67330155794539 6.61337924177733 6.19589144638199 5.97323491440991 6.35590270197246 5.58848570773679 5.7805919761835 5.72906276547981 5.50500715283844 4.66618862857066 0.221666543551570 0.220644732480725 0.228913212137513 0.224222766532898 0.222184186376089 0.220644732480725 0.22351628143172 0.220800652803900 0.229840690263840 0.223920015092930 0.225563960977085 0.220644732480725 0.226145956806250 0.229970064337140 0.225656832047403 0.220644732480725 0.220644732480725 0.228373233618831 0.225436715143686 1 1 + 6062502 6063039 6062776.818 6062209 6063284 + gene protein_coding_gene FALSE TRUE AT1G17620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11890.1); similar to Heavy metal transport/detoxification protein; Harpin-induced 1 [Medicago truncatula] (GB:ABE94112.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.477278726358402 2.96465071418012 0.0170729932955128 1 3.84114729446656 9.84779096360385 0.477278726358402 0.211681102409079
AT3G06860_at 7.60385772838896 7.81729590911367 8.29218105903648 8.22405026748201 7.92868834437096 7.74750366865336 7.6997793644207 7.76482598980341 6.98309705578709 7.04333616626971 6.87955193005806 6.37592107327867 7.24842645671202 7.3439941932909 6.57266889704281 7.22675704125947 7.3459769184262 7.10966106192607 6.63516713354312 0.200475661864583 0.189292391577992 0.195570312851041 0.195206729550770 0.194275918968703 0.207283835759650 0.189292391577992 0.201111833193397 0.216006353669214 0.195846498579407 0.196790512617262 0.200559923790424 0.194896653903672 0.196658522594889 0.199106008077744 0.190156366408139 0.193927310415707 0.211381428943266 0.198128686551929 3 0|3 /|+ 2165029 2165991 2165491.2 2161875 2166355 + gene protein_coding_gene FALSE TRUE AT3G06860.1 MFP2 (MULTIFUNCTIONAL PROTEIN); enoyl-CoA hydratase Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. similar to AIM1 (ABNORMAL INFLORESCENCE MERISTEM), enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT4G29010.1); similar to Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase ; 3-2-trans-enoyl-CoA isomerase ; 3-hydroxybutyryl-CoA epimerase ; 3-hydroxyacyl-CoA dehydrogenase ] (GB:Q39659); similar to Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a [Includes: Enoyl-CoA hydratase ; 3-2-trans-enoyl-CoA isomerase ; 3-hydroxybutyryl-CoA epimerase ; 3-hydroxyacyl-CoA dehydrogenase ] (GB:O49809); similar to protein MFP-b [Cucumis sativus] (GB:CAA55910.1); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, C-terminal; (InterPro:IPR006108); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; (InterPro:IPR006176); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase; (InterPro:IPR006180); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) 0.226167832459991 2.96392394158153 0.017092453069339 1 3.84010953536499 14.8348076989250 0.226167832459991 0.0511190154729075
AT4G09900_at 6.61629102915723 6.88400190725537 6.90736740997508 6.97222311276332 7.83131470367082 7.09666037158654 8.48468360179192 8.44665023734146 7.41085106049655 7.62821842402278 6.99890170956897 6.95250280752325 7.20137247198621 7.29663204977145 7.00759193558367 7.25771333665128 7.19751838526786 7.30223424071965 7.25277506395234 0.145099520070644 0.139280161139279 0.141994832412217 0.141401802015468 0.142148799689301 0.152660806077428 0.151562991825476 0.149373065050457 0.152011023254931 0.141370038538395 0.141084138880096 0.144632068068274 0.144384075199421 0.140840515500212 0.141223983996574 0.141213025432671 0.149641568913518 0.146138827175904 0.142324133190854 4 4|0 -|/ 6221785 6223846 6222849.722 6221661 6224131 - gene protein_coding_gene FALSE TRUE AT4G09900.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G33990.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.342410888372035 -2.96034507477514 0.0171886145445385 1 3.83499873450488 14.6961106550050 -0.342410888372035 0.135937594447527
AT2G45990_at 9.9812054623839 9.8614034133431 9.84316265941792 9.8909836671906 10.2209904517547 9.8727398433248 10.8019564452042 10.5443916083755 10.6697708882726 10.5611920307611 10.5078076713988 10.4225892465217 10.3042384524604 10.5053558365664 10.4401994874795 10.3550970958216 10.1607142510023 10.4927935203813 10.4808874254956 0.0749907660893493 0.0714010241734444 0.0779329646435805 0.0756383421924226 0.0714010241734444 0.0786495006311448 0.0725562514156918 0.0723969239776694 0.079544433465038 0.0736290054113574 0.073382509196623 0.0724922713479257 0.0729960084388883 0.072112846838628 0.0736092290243437 0.0714010241734444 0.0726312283260085 0.072538365035339 0.0740004031126871 2 2|0 +|/ 18926959 18928084 18927721.375 18926436 18928584 + gene protein_coding_gene FALSE TRUE AT2G45990.1|AT2G45990.2|AT2G45990.3|AT2G45990.4 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80178.1); contains domain no description (G3D.3.40.50.1000); contains domain HAD-like (SSF56784) -0.256143706605207 -2.95938398157877 0.0172145335768867 1 3.83362609466318 20.6117123072312 -0.256143706605207 0.0782118080816161
AT1G79000_at 8.2282616232902 7.9415454842141 8.19469864153625 7.92298803709934 8.70827928839009 8.18082479323191 8.3130865101641 7.62128098917761 7.1099699551317 6.60735089079139 7.4225005665696 7.42861358094222 7.64500456428031 7.28298566193342 7.2350918372029 7.92452618587178 7.622253058188 6.76293705141998 6.85072624574415 0.181178797205910 0.182210903222526 0.181150567960578 0.176148959741852 0.187891191093783 0.179499906171757 0.181410593048770 0.179980564327394 0.199213251527085 0.181571290129981 0.185124996763803 0.180209443466416 0.18080262363073 0.178217499786737 0.187869489057724 0.176970119050344 0.190828965251200 0.192372128442547 0.188029374959006 1 1 - 29722054 29722613 29722364 29721243 29728859 - gene protein_coding_gene FALSE TRUE AT1G79000.1 HAC1 (P300/CBP acetyltransferase-related protein 2 gene); transcription cofactor Homologous to CREB-binding protein, a co-activator of transcription with histone acetyl-transferase activity Identical to Histone acetyltransferase HAC1 (EC 2.3.1.48) (HAC1) [Arabidopsis Thaliana] (GB:Q9C5X9;GB:O64548); similar to histone acetyltransferase 5 (HAC5) [Arabidopsis thaliana] (TAIR:AT3G12980.1); similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to histone acetyltransferase 4 (HAC4) [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) 0.392563702215757 2.95928687960107 0.0172171544973877 1 3.8334874094236 15.2746230511497 0.392563702215757 0.165340660672104
AT1G80910_at 6.94756503859737 6.91924541909118 6.92044426632003 6.9529900610578 6.33448153615049 6.38244900782854 6.66545375354088 6.61787378071598 5.95550170573736 5.28114494844426 5.62188111213502 6.42599539781169 6.18506954399396 6.51669517307169 6.10688367335606 6.2305547120431 6.19830237367991 5.51685610855899 5.43099445243968 0.208386868430559 0.203749372170948 0.210177994146525 0.203749372170948 0.208757742053557 0.216265984517657 0.211294401512136 0.224708665421457 0.213976622804198 0.203749372170948 0.211319033317977 0.213730183244407 0.203749372170948 0.207064927828776 0.211109220565997 0.205943268510692 0.221869043484477 0.211281126921888 0.203749372170948 1 1|0 +|/ 30407527 30408334 30407922 30405626 30408568 + gene protein_coding_gene FALSE TRUE AT1G80910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16020.2); similar to Os08g0427300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061842.1); similar to myrosinase precursor [Brassica oleracea] (GB:AAL67437.1); contains domain FAMILY NOT NAMED (PTHR13056); contains domain SUBFAMILY NOT NAMED (PTHR13056:SF2) 0.2022280564052 2.9592840367171 0.0172172312370869 1 3.83348334908413 12.5456429232653 0.2022280564052 0.0138724247055285
AT1G78790_at 4.6468156878672 4.97478986929461 4.69951098813662 4.64157712124087 5.06437160541179 4.89759761366622 4.78552559491849 5.16055735235189 5.32374434608253 5.22262859609789 4.96338664714192 4.65281727545469 4.65356807476288 4.90466471485000 4.2524899852553 5.14173031051935 4.69686727393422 4.73136531270881 5.14665571938962 0.313199964182939 0.299557678088350 0.308268342519453 0.303280797218854 0.297066348093174 0.312885156780221 0.311386118581860 0.304100217864837 0.329006592602236 0.30585121398897 0.305723893591436 0.297066348093174 0.303750947763344 0.302220557947089 0.311358723494359 0.297066348093174 0.303603728259566 0.301189646945539 0.303260503689192 1 1|0 -|/ 29628823 29629923 29629341.143 29628422 29629971 - gene protein_coding_gene FALSE TRUE AT1G78790.1|AT1G78790.2 similar to Os04g0481500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053111.1) -0.273778074261225 -2.95860943103469 0.0172354512831020 1 3.83251983009127 9.8491536057035 -0.273778074261225 0.0914714275496711
AT2G26980_at 8.1347411164569 8.11589612075456 8.33855143893642 8.24905916670136 9.08304661729697 8.61678409448998 8.7975509683412 8.58934365240502 8.50966704712969 8.26911359319171 9.11234278563695 8.70959332032543 8.57457671105307 8.66397451655701 8.88893211522792 8.69892625446042 8.69107122581843 8.76930021527096 8.3710892091176 0.136156716646144 0.131503571713772 0.132723480587876 0.13321259188009 0.139245274948899 0.131907175048161 0.134997667155077 0.135835729674795 0.151522310717304 0.140977912451823 0.128847018267618 0.128694988807596 0.129916448282624 0.133187091992172 0.133213248967095 0.134495361904620 0.141320626768050 0.135538547212275 0.133775157697736 2 2|0 -|/ 11522801 11524032 11523468.1 11521781 11525583 - gene protein_coding_gene FALSE TRUE AT2G26980.1|AT2G26980.2|AT2G26980.3|AT2G26980.4|AT2G26980.5 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase/ protein kinase|CIPK3 (CBL-INTERACTING PROTEIN KINASE 3); kinase encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. similar to protein kinase family protein / NAF domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G21326.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95889.1); similar to CBL-interacting protein kinase 4 [Populus trichocarpa] (GB:ABJ91212.1); similar to CBL-interacting protein kinase 3 [Populus trichocarpa] (GB:ABJ91211.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.271388529048767 2.95819822580882 0.0172465670734218 1 3.83193250272278 17.0640614433512 0.271388529048767 0.0897743527374402
AT1G79975_at 6.13229218367671 6.45263369322948 6.5116855937165 6.2139028252894 7.10925491023232 6.661235824462 6.58802904221585 6.50613728345543 6.60652077842536 5.8064794830296 6.57980019053867 6.36731000439948 7.01395386619417 6.50739490383198 6.2726760854115 6.70615398701815 6.04730994371699 6.60407981869688 5.9396129956079 0.244036044818220 0.239882476259466 0.239782503831274 0.242423416217187 0.245150981781534 0.247067011827903 0.239733250609324 0.249298547446515 0.265754915998267 0.244560018713573 0.252724828086282 0.242537099325385 0.239733250609324 0.256648608035508 0.246631908382145 0.246317259754636 0.272822376261034 0.250807425878598 0.243405110784294 1 1|0 +|/ 30089425 30089878 30089706 30089007 30090494 + gene protein_coding_gene FALSE TRUE AT1G79975.1|AT1G79975.2 similar to Os01g0593600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043462.1); similar to hypothetical protein DDBDRAFT_0190211 [Dictyostelium discoideum AX4] (GB:XP_645912.1); contains domain SUBFAMILY NOT NAMED (PTHR12952:SF5); contains domain FAMILY NOT NAMED (PTHR12952) 0.299521917701189 2.95631888794039 0.0172974641850169 1 3.82924808365321 12.8368327206998 0.299521917701189 0.109274205279358
AT4G20020_at 5.34164979490606 5.49979894557057 5.04957939167797 5.29036844466071 4.79002872309433 5.07128572383690 5.09950094243232 5.78602873065905 4.40465801727059 5.12713091197697 4.21061431805227 4.02493441678971 4.32369508538492 4.26670418552281 4.56613965597094 4.59561803950648 4.59081871960325 4.39948493050445 4.50879981149026 0.236165143302205 0.237545668198712 0.241500677975834 0.234508081956314 0.234508081956314 0.238691564402455 0.236259723445589 0.237764835721468 0.234508081956314 0.234508081956314 0.234508081956314 0.243327729832399 0.236386147020407 0.240525492263892 0.234629865553564 0.23520765197596 0.235264365416315 0.234508081956314 0.240694827934925 4 4 - 10844461 10844965 10844766.818 10844141 10846157 - gene protein_coding_gene FALSE TRUE AT4G20020.1|AT4G20020.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44780.1); similar to Proteinase inhibitor, propeptide [Medicago truncatula] (GB:ABE87738.1); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.344687055285136 -2.95434526387808 0.0173510820082700 1 3.82642872821817 9.76725379501947 -0.344687055285136 0.137729816496355
AT4G27380_at 5.62722296297034 5.78394377519354 5.7990727953937 5.55461280036621 5.32147419873332 5.01324100131532 5.74453569635144 6.500955514099 3.72352589808682 4.08186829697753 3.64701369091028 4.44066802746352 3.33906289636756 3.71361174901129 4.06570326200017 3.64880606975844 3.59298624868281 3.13244464859161 4.00211835850695 0.241806022010058 0.249831036086541 0.244494323303686 0.241201364436590 0.236415759467749 0.255126272340601 0.241619328391477 0.249020574019226 0.247044069914319 0.246182575638379 0.236415759467749 0.239386837925051 0.242770101595017 0.242580469229116 0.236703537862613 0.236415759467749 0.244677592396710 0.2374642643451 0.240537589214966 4 4|0 +|/ 13701379 13702923 13701936.25 13701250 13703157 + gene protein_coding_gene FALSE TRUE AT4G27380.1 similar to hypothetical protein MtrDRAFT_AC126013g5v1 [Medicago truncatula] (GB:ABE84236.1) -0.365182365980162 -2.95268026111587 0.0173964490716223 1 3.82405003790922 9.48481963903051 -0.365182365980162 0.150019604521670
AT1G02140_at 9.8056406750341 9.87333269357776 9.86473328320652 10.0054798270634 9.85235932708454 9.72299523339751 9.82421554031143 10.2330536576336 9.5279275352804 9.31146002427419 9.98162323309387 9.921485695297 9.91760399657397 10.0134239107666 10.1219878304050 9.89301472192232 9.89556414498548 9.62621055014725 9.16786113518982 0.0918353609199414 0.0899311637476892 0.0980661923881446 0.0914166951753878 0.0907879310531098 0.099125340986612 0.0879653808192449 0.0925871621920219 0.097552169332019 0.0947036256542443 0.0907365031601523 0.0879653808192449 0.0912332780708307 0.0919081286434197 0.0881574967033886 0.0879653808192449 0.100163925238684 0.0918337998287268 0.0895219127549946 1 1|0 -|/ 403478 404365 404043.889 403190 404456 - gene protein_coding_gene FALSE TRUE AT1G02140.1 MEE63 (maternal effect embryo arrest 63) Identical to Protein mago nashi homolog [Arabidopsis Thaliana] (GB:O23676); similar to mago nashi [Taiwania cryptomerioides] (GB:ABB91896.1); contains InterPro domain Mago nashi protein; (InterPro:IPR004023) 0.256472985766454 2.95191965186482 0.0174172145135452 1 3.82296333837511 19.5262831923205 0.256472985766454 0.0789773165906711
AT3G07430_at 8.3203253491614 8.43811299443317 7.53471308227313 7.72618287336846 6.5649370329599 7.73213745490909 8.0217308188333 8.75994098745048 7.2021952117579 7.4087379899681 6.65969906354664 7.54518892972964 7.38520992206685 6.94708740527563 8.03485206855402 7.03888742466013 6.85347500979449 6.66924570812962 7.0202020079452 0.223991276159091 0.219830679897882 0.225879654045372 0.218108759043071 0.214771517120365 0.231350221025710 0.215343277410391 0.224632607179887 0.227559584051111 0.217940579603164 0.215023415000762 0.213892757971051 0.217725172786869 0.222090855490242 0.217520362467171 0.215470688494570 0.228599391414604 0.230068549210866 0.219456986578103 3 3 + 2379407 2379926 2379662 2379199 2380204 + gene protein_coding_gene FALSE TRUE AT3G07430.1 EMB1990 (EMBRYO DEFECTIVE 1990) similar to YGGT family protein [Arabidopsis thaliana] (TAIR:AT4G27990.1); similar to Os07g0185300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059065.1); similar to ycf19 (ISS) [Ostreococcus tauri] (GB:CAL52377.1); contains InterPro domain Protein of unknown function YGGT; (InterPro:IPR003425) -0.532103819173025 -2.95151629142878 0.0174282370779858 1 3.82238703241632 15.0633021215203 -0.532103819173025 0.242143344984469
AT3G57030_at 6.68437012377406 6.88783100392634 5.33533627932102 5.66164256762995 6.33844979865926 6.05518074847796 6.33916754463239 6.45353065215169 6.54329453477808 6.51865332476377 7.03944527493003 7.34593723765916 6.59489124334659 7.08806615392953 6.87519274237716 6.3806918209706 5.9748282222437 6.90860251521019 6.62039597681974 0.191347652685563 0.182089038902662 0.187578445626702 0.184852463179626 0.186650402727183 0.178062890798578 0.196345910807214 0.181224153303033 0.184718625179615 0.182020869208457 0.186258955457740 0.179376926784758 0.180418887698107 0.189662151691043 0.184268608495161 0.179777158753485 0.199635984692937 0.186410340616255 0.181251158583796 3 3 - 21112657 21113100 21112896.091 21112436 21114272 - gene protein_coding_gene FALSE TRUE AT3G57030.1 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Lycopersicon esculentum] (GB:AAF75751.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.264198430026451 -2.95047355395212 0.0174567652207358 1 3.82089715823706 12.8878076798819 -0.264198430026451 0.084989469093133
AT4G26400_at 7.84610838046892 8.47384239625729 7.52973356873448 7.80873909862617 8.07992609955076 8.26648957561874 7.17655886450942 7.53927165648424 8.44643625826219 7.92372623408505 7.35371992570524 7.62899277002553 7.2300146926519 7.59960076706449 6.94689661322601 7.39114866839642 6.81468087221189 7.75190440340422 8.20607993330739 0.195851213242149 0.182727282601457 0.182789210683450 0.184944768965796 0.185264311334788 0.178665646296353 0.187855160745059 0.187713659135187 0.197754030924640 0.179710232061940 0.184215992730191 0.182181810610126 0.183016414394283 0.184385886386119 0.198491794859485 0.182145582252949 0.200631683274016 0.186637591934330 0.183273014204654 4 4 - 13344968 13345458 13345211.636 13344817 13346606 - gene protein_coding_gene FALSE TRUE AT4G26400.1|AT4G26400.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G56340.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.345092104131628 -2.95033926946982 0.0174604426022353 1 3.82070528585456 15.6059340288499 -0.345092104131628 0.138255468868396
AT1G03040_at 7.66926170358014 8.05792589311586 8.1709914594561 8.14228338189227 8.40681242602061 7.73445552022384 7.86309370762747 7.93763300897716 6.36581722552282 7.13131977740888 7.37601441267284 7.16569788201103 7.69804711411043 7.45745936215869 7.21104845689937 7.62062974379481 7.55367970899696 6.67877784968986 7.19442588946765 0.182206669852942 0.189164610520787 0.193915898345187 0.185711325999344 0.189628164790624 0.211499561662835 0.175379304423968 0.19248228559238 0.213861454677292 0.197572746504681 0.184859458405108 0.180149094114338 0.175379304423968 0.179008620194387 0.177977537743473 0.182102158245943 0.206267400442731 0.196392768745686 0.18433871970569 1 0|1 /|- 704280 705593 704819.25 703906 706631 - gene protein_coding_gene FALSE TRUE AT1G03040.1 basic helix-loop-helix (bHLH) family protein similar to UNE12 (unfertilized embryo sac 12), DNA binding [Arabidopsis thaliana] (TAIR:AT4G02590.2); similar to unknown [Solanum tuberosum] (GB:ABB16991.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.339819402032509 2.94981139245049 0.0174749062805033 1 3.81995101704116 15.1189856111574 0.339819402032509 0.135105043092216
AT1G26170_at 5.30987952682603 5.55635195533582 5.6319820740339 5.44049171012 5.40713919172133 5.56126316646754 6.01199316615858 5.88126440356592 5.4680637917104 5.72075850827048 5.1732596628007 5.29079890552153 5.45713884864495 5.45457192484682 5.50292109785286 5.48152338059453 5.63576998813767 5.41446242870614 5.98337026472332 0.198384449553119 0.200925343611427 0.203435877364858 0.205346337227598 0.200320923114263 0.201752310552188 0.198684882730760 0.202944076070404 0.201477794126291 0.201254324762691 0.201228388572837 0.199786166871309 0.203459576206838 0.205675434557945 0.203211763621165 0.195935164403115 0.197674270347819 0.213460219914023 0.201429170992099 1 0|1 /|- 9047526 9048674 9048181.875 9047526 9054425 - gene protein_coding_gene FALSE TRUE AT1G26170.1 importin beta-2 subunit family protein similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to putative Importin 9 [Oryza sativa (japonica cultivar-group)] (GB:BAD68021.1); similar to Os06g0274100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057373.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) -0.238705817991238 -2.94941793165670 0.0174856950479160 1 3.81938879968088 11.1752306332151 -0.238705817991238 0.0643478179698287
AT2G41705_at 6.27719087776306 6.73876682695699 7.1668848164435 7.2468742034685 7.77761313201124 7.2362826471004 5.77570847291519 6.37976757885556 5.79503913397421 5.852199077998 5.19164562383803 5.26668639902835 5.51330142139742 5.7850338677384 3.97921687682806 5.75387723328625 5.86438257883642 5.49320081223149 5.29920557912802 0.22273072527605 0.220505452884759 0.219870631512066 0.215127633780767 0.214813548489479 0.220080940701331 0.237429336508565 0.217110689011841 0.227274036418900 0.21416994988467 0.21416994988467 0.217996204137320 0.218885372540589 0.218017371915226 0.222023973177868 0.21416994988467 0.227170467383970 0.215441886369197 0.216897696589189 2 2 + 17406385 17406948 17406568.909 17404352 17407154 + gene protein_coding_gene FALSE TRUE AT2G41705.1 camphor resistance CrcB family protein similar to Os10g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065429.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_500293.1); contains InterPro domain Camphor resistance CrcB protein; (InterPro:IPR003691) 0.385579382623931 2.94932550757790 0.01748823033157 1 3.81925673312041 12.3272524187800 0.385579382623931 0.162097519975384
AT3G22380_at 9.37629018464382 9.46603948233165 9.52511613719193 9.46947595475487 9.98777225803313 9.75892459640716 9.29693729789258 9.19274350164638 9.32046221845616 9.02342508765107 9.13544836402986 9.36922412243645 9.26459360776609 9.2684961687239 8.90598736321827 9.61606830347196 9.18701125958698 9.3163776123559 9.15796743983971 0.109686230181875 0.104561279410997 0.105594047387195 0.104606708675386 0.103588672167204 0.108503047981980 0.104181095748389 0.105554696186747 0.114641740966581 0.110410064280322 0.105241382619651 0.102914224356969 0.108491806267922 0.100581958443855 0.109655700675410 0.100581958443855 0.108410407733442 0.106740353551582 0.102763413374221 3 3 + 7918292 7918831 7918560.182 7913126 7919491 + gene protein_coding_gene FALSE TRUE AT3G22380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63180.1); similar to Os07g0571100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060049.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84664.1) 0.221467777425598 2.94921743367397 0.0174911953872634 1 3.81910230349522 18.7217553093699 0.221467777425598 0.0471961555545864
AT2G43290_at 5.48293693901978 5.56621310586656 5.40744842651455 5.1177278329078 5.55831546358554 5.72808932720109 6.39985968059186 6.57005618818026 7.06076817075395 5.73608615617008 7.32086284134213 6.73668683362043 5.90828690976906 7.43306932506352 6.30194235967335 5.4240718608106 5.37015975993455 5.95072285377892 5.91233888764536 0.189762472027715 0.184947652972118 0.189518302503530 0.185667679096664 0.184295498594273 0.190701301711053 0.187046894571345 0.186528719353319 0.192611985514644 0.187788370022627 0.186560803740296 0.185552218798303 0.189488758646963 0.181919217953009 0.184285222554030 0.181919217953009 0.193015082154222 0.18698766060699 0.187985231344004 2 2 - 17998515 17998910 17998752.545 17998129 17999124 - gene protein_coding_gene FALSE TRUE AT2G43290.1 MSS3 (MULTICOPY SUPPRESSORS OF SNF4 DEFICIENCY IN YEAST 3); calcium ion binding Encodes calmodulin-like MSS3. similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G59440.1); similar to calcium-binding protein [Lotus japonicus] (GB:CAB63264.3); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080); contains InterPro domain Flagellar calcium-binding protein (calflagin); (InterPro:IPR003299) -0.24127180552655 -2.94792750516566 0.0175266252878206 1 3.81725903062473 11.9998924110779 -0.24127180552655 0.0667244024790986
AT1G04550_at 5.78093921404252 6.18128319158647 6.29782377478864 6.48390786314948 6.02107839496294 5.95849517739988 6.8743817667045 7.02050035197322 6.11527678674547 6.09373594237546 5.47553255110187 6.02674490618746 6.48723117066692 5.77133771167621 5.72717215936432 6.41662249658192 5.845733743773 5.83796472489484 6.36855627619662 0.188351414465898 0.197006070409744 0.192843056398086 0.197899614431364 0.201548176568538 0.194191318327965 0.187214622333573 0.189782492390605 0.207409540356458 0.195874254757794 0.188221484744623 0.197916785796288 0.190195354311455 0.19842980790668 0.195497142443979 0.186660798730296 0.206282255394600 0.191449967412284 0.188248174578757 1 1|0 +|/ 1240717 1241651 1241226.444 1240374 1242120 + gene protein_coding_gene FALSE TRUE AT1G04550.1|AT1G04550.2 IAA12 (AUXIN-INDUCED PROTEIN 12); transcription factor IAA12/BDL plays a role in auxin-mediated processes of apical-basal patterning in the embryo. bdl mutants lack a primary root meristem Identical to Auxin-responsive protein IAA12 (Indoleacetic acid-induced protein 12) (Protein BODENLOS) (IAA12) [Arabidopsis Thaliana] (GB:Q38830;GB:Q8LA42); similar to IAA13 (indoleacetic acid-induced protein 13), transcription factor [Arabidopsis thaliana] (TAIR:AT2G33310.1); similar to aux/IAA protein [Populus tremula x Populus tremuloides] (GB:CAC84709.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.258965198621573 -2.94766722966202 0.017533783149436 1 3.81688709050902 12.3978339342276 -0.258965198621573 0.0812011666767285
AT4G24090_at 7.1096788676692 7.51755375559092 6.51060537251832 6.96701312677371 7.39275448221504 7.00950669687099 7.97279774309998 7.45862834208637 7.72140362389387 7.18608419180763 7.41522525780914 7.72616233917126 6.70980303611979 6.98814116051354 7.25735607154721 7.49265188806039 7.16849561689494 6.89531472346821 7.30024096613904 0.226930069037856 0.213753975189249 0.235929782473915 0.226657731466783 0.218981275904781 0.213753975189249 0.225160108012024 0.222186711587501 0.233890184361641 0.221295142226109 0.220790735824619 0.218603352688743 0.226689150582348 0.241732508089362 0.223979040809720 0.216237835873334 0.233194548357087 0.230674207596525 0.220007491312205 4 4 + 12513639 12514451 12514014.3 12512746 12514602 + gene protein_coding_gene FALSE TRUE AT4G24090.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD33764.1); contains domain Metalloproteases ("zincins"), catalytic domain (SSF55486) -0.370313628216277 -2.9472518432313 0.0175452129906316 1 3.81629348369371 14.5469273095089 -0.370313628216277 0.153416546455327
AT1G55850_at 8.2399865682315 8.9092933774417 9.09974133555703 9.31056319188238 9.80137605389847 9.23027191841535 5.90178178471729 6.49483083012294 7.35836547502286 6.68764631375517 5.09983895597037 4.44848309881190 5.97294665532358 6.53420778707606 4.17463215436739 7.36098874450598 6.87395003573732 6.30981940406217 6.83832295847592 0.225699242328123 0.221350340512738 0.232276472040871 0.220797289566674 0.238233175047483 0.229511593069803 0.221114279814830 0.229039073914644 0.22478370543227 0.22174764719613 0.221279043357564 0.233341506767444 0.221085362664758 0.234086748534195 0.231506918857328 0.218593951127851 0.230224412611679 0.223961249155051 0.221279564287414 1 1 + 20882539 20883054 20882749.818 20880365 20883148 + gene protein_coding_gene FALSE TRUE AT1G55850.1 ATCSLE1 (Cellulose synthase-like E1); cellulose synthase/ transferase, transferring glycosyl groups encodes a protein similar to cellulose synthase similar to ATCSLG2 (Cellulose synthase-like G2), transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G24000.1); similar to cellulose synthase-like protein OsCslE2 [Oryza sativa] (GB:AAL25130.1); similar to cellulose synthase-like protein CslE [Nicotiana tabacum] (GB:AAZ32787.1); similar to putative cellulose synthase-like protein OsCslE1 [Oryza sativa (japonica cultivar-group)] (GB:BAD46391.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) 0.429714211770239 2.94649241617179 0.0175661294225499 1 3.81520819687058 14.7776322676499 0.429714211770239 0.187210001315186
AT4G14910_at 7.19303229442671 7.33357451978686 7.07579611533348 7.18948866344587 7.36752435583708 6.66752072327242 8.05708340975211 8.23315035524741 7.75517417151128 7.81725285975347 7.81983190893911 7.5499393160691 7.9551026428786 8.14039583205838 7.77920704706442 8.32199464144654 7.07585930148637 7.5751317840016 7.84620106227564 0.161352765553038 0.161236078853260 0.156520990318144 0.160174032419242 0.155148304057514 0.165881513046769 0.161168365885005 0.155019376981671 0.166204940369634 0.155631345365041 0.159571598171956 0.162897958189360 0.157407830657284 0.166463022509891 0.1591506877012 0.154717572672869 0.171246264216328 0.159204473082815 0.156997737003723 4 4|0 -|/ 8528451 8529688 8529042.7 8528163 8530110 - gene protein_coding_gene FALSE TRUE AT4G14910.1|AT4G14910.2 IGPD (Imidazoleglycerol-phosphate dehydratase); imidazoleglycerol-phosphate dehydratase|IGPD (Imidazoleglycerol-phosphate dehydratase) Encodes imidazoleglycerolphosphate dehydratase. similar to imidazoleglycerol-phosphate dehydratase 1 (IGPD1) [Arabidopsis thaliana] (TAIR:AT3G22425.2); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazoleglycerol-phosphate dehydratase; (InterPro:IPR000807) -0.329077117800754 -2.9463033787937 0.0175713399672429 1 3.81493804017565 15.1813423915160 -0.329077117800754 0.128769737830813
AT3G16560_at 7.26925413475707 7.62001943201487 6.65622588732965 7.06712193260223 7.8831743110339 7.46211068739827 7.66207402768026 8.01269549362047 7.1637311375816 7.2862495529859 7.19988633563412 6.87938039836662 7.08572412811184 7.33003796134078 6.24410629882695 7.10038706107432 6.7253686759026 6.84089404053443 7.22287565822887 0.171308127183620 0.172666176130832 0.175880305894522 0.16513463779853 0.167713121593511 0.169090331885224 0.163251733588766 0.168560165901139 0.173461648234348 0.169975886206148 0.164814799444697 0.164957635202764 0.169714402025644 0.169358114849031 0.179909998289250 0.163251733588766 0.180620819233356 0.180579618232938 0.167193679575944 3 3 - 5636059 5636797 5636399.273 5635602 5638488 - gene protein_coding_gene FALSE TRUE AT3G16560.1 protein phosphatase 2C-related / PP2C-related similar to PLL5 (POL-like 5), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G07630.1); similar to OJ000315_02.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE05356.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.336207452275991 -2.94613655430829 0.0175759395721089 1 3.81469962634992 14.5290887693410 -0.336207452275991 0.133162369315356
AT2G28060_at 6.97445821177415 7.31669336898183 7.42506750458989 7.59365378099274 7.91488158375754 7.46224932502718 7.51343519191447 7.39024153337902 5.84683874834404 6.4441059177616 6.4136447434745 6.42287733479591 6.4258091093519 6.86048929552522 6.42133735174592 6.81492503552317 7.32420524524689 6.23953884319184 6.70683656664573 0.185441932360503 0.184200030932002 0.185752689478647 0.180042946924877 0.187480723242297 0.182159921581594 0.179562070328506 0.183142896916943 0.195403516264288 0.186609345496884 0.181941100819086 0.179562070328506 0.181836970768632 0.181163000538147 0.183917430043264 0.179562070328506 0.196692494999903 0.194622638254062 0.185770777886267 2 2 - 11957272 11957520 11957390.364 11957063 11959281 - gene protein_coding_gene FALSE TRUE AT2G28060.1 protein kinase-related similar to AMP-activated protein kinase [Arabidopsis thaliana] (TAIR:AT5G21170.2); similar to beta subunit 3 of SnRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAE96296.1); similar to Os09g0364900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063002.1); contains InterPro domain 5-AMP-activated protein kinase, beta subunit, complex-interacting region; (InterPro:IPR006828) 0.291507798842966 2.9457993604223 0.0175852403201651 1 3.81421772691111 13.9228086196058 0.291507798842966 0.104637109234539
AT4G38680_at 7.25264126161564 7.3730538131583 7.24201837579047 6.7923757593222 6.3278465536651 7.16071317941579 7.09197248920126 7.88055425797033 7.7989214229769 7.9586758442887 7.39141808272981 7.6710717630482 8.02514772607374 7.29550828573093 7.49309360869121 7.32488023551849 7.4416492033641 7.64547684149961 8.16721269586363 0.136831503579003 0.136247969516034 0.141388551194733 0.142759837678336 0.150943949759925 0.146202168278567 0.138727570510848 0.143209612072404 0.14226354589364 0.140154729368996 0.140379496552223 0.138115233071565 0.134627298240006 0.141440224776065 0.144234330605872 0.138478026197458 0.140104862212766 0.138541794695981 0.137641579937289 4 4 - 18072248 18072801 18072596.273 18071878 18073176 - gene protein_coding_gene FALSE TRUE AT4G38680.1 GRP2 (COLD SHOCK DOMAIN PROTEIN 2); nucleic acid binding encodes a glycine-rich protein that is present as several copies in the genome. It is expressed equally abundantly in all tissues examined. similar to ATGRP2B (GLYCINE-RICH PROTEIN 2B), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G21060.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.478861462241194 -2.94546706238877 0.0175944110029952 1 3.81374281697999 14.8956306476216 -0.478861462241194 0.214211036698807
AT3G59110_at 7.12213705004886 7.43119471175659 6.30353666043364 6.45495336412264 6.96000081064753 6.81879184665536 7.31518571624392 7.46915411302942 7.38093639469778 7.13083509592552 7.58760852182722 7.6304994649831 7.51719621020282 7.75831057213335 7.64572856862637 7.26396290690845 7.03130857263967 7.60097832787968 7.36737250671422 0.186730467505349 0.185681073004569 0.187903772187371 0.190484813873907 0.189270793684279 0.19845465663104 0.185681073004569 0.188195341503808 0.18824041152426 0.187695254261598 0.189484089870651 0.191623507624472 0.192147898787450 0.19617565567021 0.188210566274608 0.185681073004569 0.186552417657891 0.186614411333058 0.189245126768075 3 3|0 +|/ 21867970 21868773 21868327.444 21865696 21869181 + gene protein_coding_gene FALSE TRUE AT3G59110.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G42960.1); similar to protein kinase family protein [Musa acuminata] (GB:ABF69953.1); similar to putative kinase [Oryza sativa (japonica cultivar-group)] (GB:AAL58279.1); similar to Os10g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064960.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.244348041633665 -2.94373266314263 0.0176423568239467 1 3.8112639492628 14.3831178552485 -0.244348041633665 0.0696724814547575
AT1G25230_at 7.4368700404312 7.95119776929466 5.87063972041394 5.64712173799456 7.50291909303374 7.25418512562946 7.14370579314091 7.11495761798903 7.68275767675407 7.79507844898799 8.56920041972834 8.45230467393379 8.35751283948838 8.31631986605126 8.77988237701726 8.25203711953195 7.07277890247273 8.47426410081086 8.6082338572718 0.168250272767940 0.161498383797588 0.171525768900276 0.167380705568425 0.153560937991925 0.170779716238089 0.160151393472045 0.162210452874657 0.177239014471597 0.158032001173522 0.161137367308363 0.1579228148412 0.153560937991925 0.165154632227607 0.161335091142470 0.153560937991925 0.169036151278491 0.166530518949208 0.161587933167868 1 0|1 /|- 8840463 8841499 8841096 8840389 8842304 - gene protein_coding_gene FALSE TRUE AT1G25230.1 purple acid phosphatase family protein similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G14700.1); similar to purple acid phosphatase 1 [Solanum tuberosum] (GB:AAT37529.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.293684421452326 -2.94306045152542 0.0176609757616646 1 3.8103031460546 15.1466883780996 -0.293684421452326 0.10628266618514
AT4G37120_at 9.35341338195756 9.52325633368928 9.52358221128574 9.71606542940873 9.68983784937917 9.5610653917111 8.71753091792073 8.93830738896616 9.30049450913031 9.12725471367929 9.2704502977112 9.3185055937178 9.057560459215 9.33766955842473 8.94982582714093 9.5257374154862 9.02978493768829 9.13015919150537 9.23010484227173 0.131172541026218 0.133668432696852 0.139781667406372 0.133949322140071 0.131581406852727 0.133127011201081 0.131892155598990 0.134259287662746 0.138989127196642 0.132780125197429 0.130965315713125 0.133645390612403 0.131344832449387 0.135306962351195 0.136065911685407 0.129530138172778 0.154145321853249 0.136774822716217 0.138628001235821 4 4 + 17488254 17489091 17488705.364 17486641 17489288 + gene protein_coding_gene FALSE TRUE AT4G37120.1 SMP2 (swellmap 2) Encodes a zinc finger containing protein similar to step II splicing factors that is similar to SMP1. SMP2 is also reduced in SMP1 epigenetic alleles; plants make smaller organs having reduced cell numbers but increased cell size. similar to SMP1 (swellmap 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G65660.1); similar to RNA splicing factor-Slu7p (ISS) [Ostreococcus tauri] (GB:CAL56848.1); similar to Os08g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060905.1); contains domain Retrovirus zinc finger-like domains (SSF57756); contains domain STEP II SPLICING FACTOR SLU7 (PTHR12942); contains domain no description (G3D.4.10.60.10) 0.236343843281752 2.94287735621653 0.0176660506585485 1 3.81004143973330 18.5887555372756 0.236343843281752 0.0626880848184414
AT4G14680_at 8.86573348164302 9.03716528466055 7.75077205983378 7.93883029115885 8.26998669086392 7.50149294436503 9.0800628803339 8.8578775097967 7.09072179672834 8.34064804783814 8.3202206406272 8.32172387597799 7.84005733648923 8.62583115059723 7.58967703400345 7.99989352172131 7.55877613022338 7.79670800948283 7.43891860409396 0.186906860749874 0.186687221768128 0.195453911078103 0.187580559034332 0.179737369078999 0.197755041615732 0.187585826697053 0.188847455382256 0.217611303522088 0.182274066417794 0.180861105518523 0.184455007700208 0.184963388504696 0.180531241561055 0.197172258497366 0.180726060938514 0.195156500045024 0.193493503484266 0.187099218349875 4 4 - 8413504 8414256 8413930.182 8413283 8415386 - gene protein_coding_gene FALSE TRUE AT4G14680.1 APS3 (ATP sulfurylase 2); sulfate adenylyltransferase (ATP) ATP sulfurylase similar to APS4 [Arabidopsis thaliana] (TAIR:AT5G43780.1); similar to APS1 (ATP sulfurylase 3) [Arabidopsis thaliana] (TAIR:AT3G22890.1); similar to APS2 (ATP SULFURYLASE PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G19920.1); similar to ATP sulfurylase [Brassica juncea] (GB:CAA11417.1); similar to ATP sulfurylase (GB:AAA92350.1); similar to ATP sulfurylase (GB:AAA21570.1); contains InterPro domain ATP-sulfurylase; (InterPro:IPR002650) -0.355878906524815 -2.94236556900487 0.0176802439820892 1 3.80930990765552 16.2277603654705 -0.355878906524815 0.145273565532696
AT4G02940_at 6.46563252407111 6.87397978649822 6.49164787670684 6.47426381975467 5.65041638674708 5.45838394513155 6.7580268075695 7.12201194358957 6.87808148216909 6.65051318233273 6.799501236038 7.50297694516885 6.93322340344147 7.00233405085717 6.9056325447114 7.44542604746789 7.01657320128118 6.40469287946332 6.82603746131757 0.176150209536014 0.179261851634219 0.189750720045481 0.184738779155182 0.183466679930099 0.192258507024537 0.176342372602132 0.186662435288662 0.193687333569781 0.183660659228255 0.187839116764570 0.174749719300706 0.178181908694119 0.182509039060017 0.174749719300706 0.174749719300706 0.182764551212085 0.180886283450865 0.182677677234463 4 4 + 1310018 1310670 1310365.818 1306503 1310946 + gene protein_coding_gene FALSE TRUE AT4G02940.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G48080.1); similar to Os05g0401500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055490.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP51882.2); similar to Os10g0116900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064055.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) -0.284908547533264 -2.94232949243977 0.0176812449329012 1 3.80925834033073 13.3048815931720 -0.284908547533264 0.100373395269297
AT2G41060_at 5.30121569669598 5.11972302124901 5.64241370588247 5.2509387674706 5.45551538742144 5.38471246899126 5.02574905799352 5.13381451653578 4.92698972637863 4.85084958693061 5.04333505695254 4.85813176192551 5.34687454434981 5.01729838176287 5.001787316619 5.22101896709298 5.56479884111283 5.18209464311131 5.02479648228031 0.192232955384411 0.199409433531508 0.196857303045577 0.187878180201070 0.205302897195303 0.202317609873549 0.185004468800935 0.193114022746368 0.187280928275468 0.197346920120499 0.182752802980872 0.189117516154488 0.193748064660883 0.182624747519443 0.189183063940592 0.18516908838378 0.200159687794113 0.183802927468971 0.192567025032070 2 2 + 17135018 17135534 17135317.182 17134067 17136636 + gene protein_coding_gene FALSE TRUE AT2G41060.1|AT2G41060.2 RNA recognition motif (RRM)-containing protein similar to UBA2A, AU-specific RNA binding / RNA binding [Arabidopsis thaliana] (TAIR:AT3G56860.2); similar to RNA-binding re (GB:ABD28657.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.25423750828777 2.94121014039568 0.0177123306665299 1 3.80765831209174 10.3335750132695 0.25423750828777 0.0779482880662954
AT2G40410_at 8.8842270606668 8.73673253791408 8.85382641062999 8.68325300572668 9.34784361924844 8.83890712424339 8.41841752942687 7.9218119709466 8.26592821341888 7.9109072880577 8.12413735207455 8.3158772584822 8.18903161887795 8.39993770917039 8.16177150271446 8.2084683244296 8.29321008451276 8.29972742457718 7.91859372422034 0.174093692305485 0.166439808602412 0.172629026270461 0.174335869691739 0.172313571672269 0.169713331137319 0.172285795590161 0.180770611466388 0.184394713680199 0.180243091944317 0.170399644127537 0.171077165469149 0.173970543601132 0.172878799113295 0.179255704074969 0.175085301350851 0.175596058641626 0.172509926351973 0.180368797751610 2 0|2 /|+ 16881267 16882227 16881731.667 16880477 16882474 + gene protein_coding_gene FALSE TRUE AT2G40410.1|AT2G40410.2 Ca(2+)-dependent nuclease, putative similar to CAN (CA-2+ DEPENDENT NUCLEASE), nuclease [Arabidopsis thaliana] (TAIR:AT3G56170.1); similar to putative nuclease [Eucommia ulmoides] (GB:ABA41005.1)|similar to CAN (CA-2+ DEPENDENT NUCLEASE), nuclease [Arabidopsis thaliana] (TAIR:AT3G56170.1); similar to putative nuclease [Eucommia ulmoides] (GB:ABA41005.1); contains InterPro domain Staphylococcus nuclease (SNase-like); (InterPro:IPR006021) 0.328935341339727 2.9403305989706 0.0177367961884484 1 3.8064010171739 16.8510423579773 0.328935341339727 0.129094992980830
AT1G20950_at 8.43576139758492 8.24357114318628 7.95471506472117 7.89769321439555 7.78061651957914 7.99679373585225 9.01345273233352 9.28191590728911 8.72078670979725 8.66212874631365 9.08710590559093 9.16072662981222 8.82449503415747 9.1117239219573 9.18660821368354 8.57435114439486 8.42818459437444 8.83127710693727 8.26814059919085 0.119173078030846 0.115062469610614 0.125745501370052 0.119319087226025 0.125027452655075 0.124328209581960 0.125721480350836 0.122543040026520 0.123003699324784 0.115596834173881 0.121638799764215 0.119267539355544 0.118316151814349 0.119732842236625 0.119477787701822 0.126631471431075 0.126808539160794 0.120052103247536 0.116136968837366 1 0|1 /|- 7297470 7298204 7297828.125 7297228 7301404 - gene protein_coding_gene FALSE TRUE AT1G20950.1 pyrophosphate--fructose-6-phosphate 1-phosphotransferase-related / pyrophosphate-dependent 6-phosphofructose-1-kinase-related similar to pyrophosphate--fructose-6-phosphate 1-phosphotransferase alpha subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putative [Arabidopsis thaliana] (TAIR:AT1G76550.1); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:Q41140); similar to Pyrophosphate--fructose 6-phosphate 1-phosphotransferase alpha subunit (PFP) (6-phosphofructokinase, pyrophosphate dependent) (Pyrophosphate-dependent 6-phosphofructose-1-kinase) (PPi-PFK) (GB:P21342); similar to pyrophosphate-dependent phosphofructokinase alpha subunit [Citrus x paradisi] (GB:AAC67587.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase PfpB; (InterPro:IPR011183); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) -0.243006805515921 -2.93700136355880 0.0178297195795066 1 3.80164145412415 17.0510205080165 -0.243006805515921 0.0690038302850075
AT1G65950_at 6.87506754801819 6.57680628746809 6.50770374933782 6.11309301405319 7.45679161819492 6.27619888705271 7.63242140374752 7.2396766028568 7.12414147429856 6.72302480150344 6.14408264167849 6.32959160223693 5.92929670999918 6.86266792263165 5.68824001035535 7.05790579234087 5.9641390515379 6.15460033524323 6.53206187423231 0.221433054962537 0.229298098342906 0.226760959335554 0.219048808945361 0.223972988321843 0.244856175029137 0.224249748164794 0.220977958881134 0.218242343886723 0.226192936067786 0.222896616386171 0.226246834858015 0.220720970330589 0.218716948651842 0.229753224237063 0.222210715987932 0.238587167141767 0.233463329775943 0.224037255788725 1 1|0 -|/ 24550556 24551685 24551042.3 24550367 24554807 - gene protein_coding_gene FALSE TRUE AT1G65950.1 ABC1 family protein similar to ATATH9 (ABC2 homolog 9) [Arabidopsis thaliana] (TAIR:AT2G40090.1); similar to ABC1 family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94171.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.509653342560735 -2.93532933584799 0.0178765776641107 1 3.79925080767915 13.3644156679733 -0.509653342560735 0.231707534455999
AT4G19600_at 7.07235563387377 7.2686469088071 6.92935275564867 7.25363833409837 7.09329977812492 6.87178912515571 6.52857741603735 6.4070947961894 5.89838387244343 5.93664534518373 6.05212803890598 6.39079844253891 6.66616241408064 6.3404887718505 6.34854196134798 6.60729213246169 6.0579131865643 6.09974507171744 6.25060933490905 0.199226875307178 0.202548330237637 0.203083123650101 0.202702993499879 0.203367383312041 0.209748463269515 0.201928483684982 0.194551877424717 0.204334367822392 0.196159701875489 0.19627485711426 0.196147940816331 0.203920675509060 0.206361540437088 0.192271038660517 0.193088244705534 0.192271038660517 0.194997195793233 0.206766346226263 4 4 + 10675960 10676511 10676165.909 10672775 10676745 + gene protein_coding_gene FALSE TRUE AT4G19600.1 cyclin family protein similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to Os12g0485400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066781.1); similar to Cyclin, N-terminal domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92940.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin, T/K; (InterPro:IPR012113); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.254844438892356 2.93528119885801 0.0178779285713272 1 3.79918197927660 13.102559311798 0.254844438892356 0.0788332656534552
AT1G73390_at 8.13509681418282 8.21489323827269 8.89077147008343 8.82122424743573 9.03194277519521 8.42855355076528 9.32905131097893 9.09487544884982 7.92632444568297 7.92206482171087 7.89817564782072 8.46524851680409 8.64897960312317 8.57313680650183 7.8762660459576 8.86601063507351 9.15483425818967 8.60441808674325 8.16099014933709 0.170584525356756 0.162564262632347 0.174232851621513 0.175129239649171 0.168069136303837 0.178077520730105 0.162591919811641 0.171900488006449 0.181973120960526 0.163188470327078 0.171703887967842 0.162290949140448 0.164689164798562 0.175456531527447 0.173895281611183 0.162290949140448 0.165605402078935 0.162290949140448 0.166884722208645 1 1|0 -|/ 27594772 27596093 27595092.3 27594471 27598803 - gene protein_coding_gene FALSE TRUE AT1G73390.1|AT1G73390.2|AT1G73390.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17940.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23062.1); contains domain PCD6 INTERACTING PROTEIN-RELATED (PTHR23030) 0.303700517790967 2.93423756066411 0.0179072429719520 1 3.79768970240136 17.0003061931057 0.303700517790967 0.113495520336897
AT1G24450_at 6.2377447754342 6.64612729638618 6.41873612186635 6.21583950289762 7.6264175857447 6.7354102911808 6.25957659474648 6.15654765499803 5.54458443821132 5.11737319250669 5.91173353007321 5.45025973229607 5.80871127588384 6.34550681597463 5.20203117974255 5.41239948528335 5.21199554823448 5.5076713079365 5.00180798911663 0.235703322233853 0.233576094677985 0.248712051743985 0.234419333506957 0.239543146484487 0.244906681920913 0.242658401764931 0.237235020746030 0.256542601467360 0.239001108455622 0.234282346208272 0.238845820700352 0.235319839686185 0.249190610661695 0.242738172854823 0.243164865088188 0.250421268073176 0.242676312186934 0.241947021417964 1 0|1 /|+ 8664389 8665030 8664726.3 8664141 8665277 + gene protein_coding_gene FALSE TRUE AT1G24450.1 NFD2 (NUCLEAR FUSION DEFECTIVE 2); RNA binding / ribonuclease III similar to hypothetical protein Os03g63740 [Oryza sativa (japonica cultivar-group)] (GB:AAO66545.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) 0.404567598923838 2.93364861875468 0.0179238074710479 1 3.79684755549678 11.9508218859266 0.404567598923838 0.174128793122403
AT1G56330_at 10.2432357065950 10.3448988959787 10.5308686555768 10.6097907395598 10.0657577140855 9.94356795551362 10.4072995991049 10.5234995160949 9.62092045375372 9.71448987081349 10.4221903046362 10.5157402585768 10.2050726523594 10.1541924977494 10.4186878147835 9.83466750234046 9.74637507680611 9.84093153836067 9.54294980943066 0.104582782915969 0.105783702679575 0.104582782915969 0.106498773525376 0.106096905564396 0.11484076872273 0.104582782915969 0.105627349244964 0.113496560049832 0.106202093332819 0.104582782915969 0.104582782915969 0.107592163522102 0.111654093222463 0.106972768209288 0.108546662682556 0.10990629171929 0.113445201244454 0.111134070942575 1 1 - 21090518 21092117 21091159.273 21090220 21092214 - gene protein_coding_gene FALSE TRUE AT1G56330.1 SAR1 (SECRETION-ASSOCIATED RAS); GTP binding Encodes a small GTP-binding protein implicated in ER to cis-Golgi transport of other proteins. A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. The protein is found associated to the ER and free in the cytosol. Identical to GTP-binding protein SAR1B (SAR1B) [Arabidopsis Thaliana] (GB:Q01474); similar to ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G02080.1); similar to GTP-binding protein SAR1B (GB:O04267); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.211937498888086 2.93340127279114 0.0179307690077565 1 3.79649386093607 20.2177909729974 0.211937498888086 0.0367091559479935
AT1G16810_at 9.56127721355 9.5415604676177 9.61032439869403 9.80220078449358 9.96346128727657 10.0416737918371 8.94253171466496 9.40288907134718 9.56585260970843 9.65472865792866 9.84998242111824 9.85801735843867 9.72680461623744 9.7939619503838 9.47011831642415 9.8309860126597 9.45003239112339 9.47075329447919 9.70541045923896 0.129574392981204 0.127308927021621 0.125055320207152 0.123740834592442 0.132387794834934 0.123286515600828 0.120844536750644 0.127574904333131 0.13402032376614 0.122457068007342 0.134274615808143 0.135056663427843 0.128834279974254 0.129324243154231 0.124768269436793 0.122779584608189 0.132110376865212 0.129179644378985 0.127779040426713 1 1 + 5756145 5756661 5756532.364 5755581 5756888 + gene protein_coding_gene FALSE TRUE AT1G16810.1|AT1G16810.2 similar to CGI-144-like protein [Solanum lycopersicum] (GB:CAC81814.1); similar to Os02g0727500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047997.1); contains domain FAMILY NOT NAMED (PTHR13282); contains domain gb def: F6I1.17 protein (F17F16.8/F17F16.8) (Hypothetical protein) (At1g16810/F17F16.8) (PTHR13282:SF1) 0.265842625798203 2.93239640066109 0.0179590798012887 1 3.79505689475322 19.2699044848852 0.265842625798203 0.087431386431723
AT3G49360_at 5.66855751161547 6.28528577131542 5.96956415276169 5.73549368537333 6.93260523370127 6.92318130063945 6.36848205274719 6.06745943174824 5.77278267404228 5.55977931525308 5.8282999064025 6.08528296687511 6.24595406314659 6.11415289447657 5.78243662280253 6.28311531748264 6.10449865401119 5.81918408338714 5.71157403092524 0.254373422298994 0.250254191318015 0.272321087937804 0.274264955505228 0.25759539271542 0.276989841647355 0.247544171070159 0.251258034823334 0.269605174504696 0.258736951948443 0.244135183557407 0.251405205220622 0.252689359475397 0.258767193782869 0.270736471525727 0.244142353192265 0.264704272370985 0.248240224694706 0.252367983961086 3 3 - 18314204 18314880 18314426.909 18314031 18315401 - gene protein_coding_gene FALSE TRUE AT3G49360.1 glucosamine/galactosamine-6-phosphate isomerase family protein similar to glucosamine/galactosamine-6-phosphate isomerase-related [Arabidopsis thaliana] (TAIR:AT5G24410.1); similar to putative 6-phosphogluconolactonase [Brassica carinata] (GB:AAK50346.1); contains InterPro domain 6-phosphogluconolactonase; (InterPro:IPR005900); contains InterPro domain Glucosamine/galactosamine-6-phosphate isomerase; (InterPro:IPR006148) 0.322125895714261 2.93108476456116 0.0179961026882926 1 3.79318115920727 12.1009507609777 0.322125895714261 0.125491023367115
AT4G36660_at 7.60307191789005 7.87870986312612 7.26209664409955 7.16847666873677 7.51140917669217 7.56264177333842 8.67973372012152 8.62793295844601 7.38478850892285 7.64379941051478 7.80066834327891 7.88597459704982 7.93391899418553 7.7090645341723 7.89957661715715 7.61885001405617 7.89285071116082 8.02121762088665 7.38951479135534 0.187579603003586 0.183270507574668 0.194634879540264 0.196792364648655 0.178807094509446 0.187008056590978 0.184816233801938 0.188877966337825 0.193641126914105 0.183744301252122 0.182743204944488 0.182141381849071 0.18294798330633 0.188510862546547 0.183772508154169 0.180137307073997 0.17772720317885 0.177986969981602 0.181746088461708 4 4 - 17286715 17287257 17287020.818 17285738 17287433 - gene protein_coding_gene FALSE TRUE AT4G36660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65650.1); similar to BAC19.4 [Lycopersicon esculentum] (GB:AAG01119.1); contains InterPro domain Protein of unknown function DUF1195; (InterPro:IPR010608) -0.224320886891717 -2.92971744409714 0.0180347812672289 1 3.79122567419464 15.4457421316019 -0.224320886891717 0.051930551502377
AT1G31500_at 4.75837108101382 5.14125303372627 4.96291603461979 4.68959370541024 5.49523185911287 5.12572695396992 6.12588258241104 5.68927050249146 4.58813166972569 5.36298381173855 5.01470373427123 4.83898695355246 4.83922901421676 4.69295545720837 4.67058873135988 4.77291403270808 4.59584014415613 4.94421388599893 5.31391758177429 0.253206613152168 0.251741617141045 0.248683433023792 0.247903469866451 0.248937329663902 0.25123336716226 0.247222042190918 0.248614876299731 0.261400792200221 0.245507312123314 0.246092932135724 0.243348052652385 0.248412862078667 0.261905277958274 0.263536453137087 0.243348052652385 0.265480528251487 0.245969346656241 0.246041915081015 1 1|0 -|/ 11273849 11274462 11274075.6 11273586 11276558 - gene protein_coding_gene FALSE TRUE AT1G31500.1|AT1G31500.2|AT1G31500.3|AT1G31500.4 endonuclease/exonuclease/phosphatase family protein similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G31530.1); similar to Os05g0389500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055434.1); similar to hypothetical protein SPCC31H12.08c [Schizosaccharomyces pombe 972h-] (GB:NP_587901.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.326246260930653 -2.92970489512001 0.0180351366483001 1 3.79120772661754 10.1907923933928 -0.326246260930653 0.128161866536065
AT4G38225_at 8.98985128067662 8.74312384723627 8.71395107355748 8.5259893558802 8.67124952777858 9.02615462010447 8.93191636721215 9.15010369766432 9.49409377564502 9.1857703526359 8.88073576717573 8.91073333429129 8.9575911238501 8.83779999083413 9.06883596190062 9.25741005017864 9.11338648443235 8.85084807278476 9.22863762008372 0.104374786716957 0.0990442049276603 0.0998988137790919 0.103040209277395 0.102701642343365 0.100196766330612 0.0997990668614067 0.101002482236205 0.100287681511243 0.108964267490356 0.105267581980540 0.0977781902204773 0.107650722399806 0.103083113243273 0.0977486532893362 0.103733373560772 0.096801725338464 0.101596761975109 0.0963537167418935 4 4|0 +|/ 17927842 17928451 17928137.2 17927192 17928888 + gene protein_coding_gene FALSE TRUE AT4G38225.1|AT4G38225.2|AT4G38225.3 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93783.1); contains domain PROTEASE-RELATED (PTHR11014:SF1); contains domain PROTEASE M20-RELATED (PTHR11014)|similar to Os03g0128800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048843.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85397.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93783.1); contains domain PROTEASE-RELATED (PTHR11014:SF1); contains domain PROTEASE M20-RELATED (PTHR11014) -0.268789485903878 -2.92825000243403 0.0180763875760046 1 3.78912686792115 17.987793228415 -0.268789485903878 0.0898830946272023
AT2G22190_at 6.0937085535954 6.81637004314008 6.41278973633706 6.66012420738566 7.22037455109582 6.14593861188003 7.65770348665385 7.80705829080014 5.53027099632682 6.22242711648507 7.18148441221841 8.12225995588861 7.8370473664169 7.41694196289592 7.06508267844027 7.79223803461015 7.28270273293987 7.03695235219326 6.16922140198552 0.226621388301478 0.218474187899842 0.221727247021008 0.225855115572333 0.220145529047493 0.225293801356297 0.224991389901823 0.221013915884801 0.2332447604837 0.224409308729363 0.222993949107442 0.217732244121759 0.219731500347284 0.242638965728885 0.236278242305209 0.217732244121759 0.234073763073429 0.232395866761742 0.227611432126399 2 2 - 9441196 9442232 9441775.091 9440845 9443624 - gene protein_coding_gene FALSE TRUE AT2G22190.1 trehalose-phosphatase similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G39770.1); similar to 117M18_9 [Brassica rapa] (GB:AAZ66928.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) 0.504481099239281 2.92820268852607 0.0180777307133213 1 3.78905919500480 13.5721643643858 0.504481099239281 0.229591656655644
AT2G41700_at 8.30308756574777 8.21175599504985 8.29106847183293 8.04817257672312 8.25026310729598 7.70423174682129 8.06260117053497 7.8593740333834 7.74136739654708 7.63659266860147 7.04947123109797 6.61695642343777 6.93892875263897 7.05139085198998 6.41784871945813 7.34147831837619 7.10601420350424 7.35392051146482 7.25808958183498 0.193419832600028 0.18854908797762 0.200859738283852 0.197909345288234 0.191052600858309 0.194167531253869 0.188333064820420 0.206312229478788 0.203115566110384 0.200151068407056 0.193464637976173 0.192817145097717 0.209927534461127 0.188385303214033 0.195203076460010 0.190521572703209 0.204378192715608 0.198387205332229 0.191445646534481 2 2|0 -|/ 17390516 17391087 17390842.5 17389968 17403188 - gene protein_coding_gene FALSE TRUE AT2G41700.1|AT2G41700.2 ATPase, coupled to transmembrane movement of substances / amino acid permease| similar to ATATH11 (ABC2 homolog 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61730.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001027849.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001017406.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001017398.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439)|similar to ATATH11 (ABC2 homolog 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61730.1); similar to ABC transporter family protein [Tetrahymena thermophila SB210] (GB:XP_001017406.1); similar to ABC3 [Homo sapiens] (GB:AAC50967.1); similar to PREDICTED: ATP-binding cassette, sub-family A member 3 isoform 2 [Pan troglodytes] (GB:XP_510744.2); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.298309735671249 -2.92798360868354 0.0180839512494385 1 3.7887458440307 15.3562448378356 -0.298309735671249 0.110374610194033
AT1G78670_at 10.2272560055696 10.4119167937549 10.8311809169328 10.6870474132184 11.0663916338163 10.7195647395001 10.7548629489992 10.9100486013448 9.38309520385708 10.0741698861508 9.76532292429618 9.24954442197974 10.5550400702979 10.1870787435239 9.30471331460719 10.4812110457921 10.2110604385805 10.2754732027078 9.7906220106586 0.0883724238456403 0.0883724238456403 0.0883724238456403 0.0887230275322265 0.0938087910506268 0.0883724238456403 0.0898068014464686 0.0910020316419008 0.0945228319264585 0.0893725745004199 0.0917902613387069 0.090440281603837 0.0883724238456403 0.0940045333556622 0.0949360978353047 0.0892543636680023 0.104330103863165 0.0912755051077542 0.0886511536628092 1 1|0 +|/ 29596740 29598042 29597483.667 29595838 29598392 + gene protein_coding_gene FALSE TRUE AT1G78670.1 ATGGH3 (GAMMA-GLUTAMYL HYDROLASE 3); gamma-glutamyl hydrolase similar to ATGGH2 (GAMMA-GLUTAMYL HYDROLASE 2), gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78680.1); similar to ATGGH1, gamma-glutamyl hydrolase [Arabidopsis thaliana] (TAIR:AT1G78660.2); similar to Gamma-glutamyl hydrolase precursor (Gamma-Glu-X carboxypeptidase) (Conjugase) (GH) (GB:P93164); contains InterPro domain Peptidase C26; (InterPro:IPR011697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.252204954225391 2.92787922229624 0.0180869159658414 1 3.78859653860156 20.5775217418647 0.252204954225391 0.0772462897127282
AT2G41890_at 5.57050154312123 6.29077986007043 5.48234913076828 6.2973454487044 6.72690433127817 5.92045811552349 7.7115496482192 7.61543376291538 6.10594221997281 6.83136690341729 5.89016785341731 6.11727544653041 6.20219488467131 6.52180872243272 5.69007110034771 6.557947892709 6.15698661072686 6.33894292603916 6.62987041834074 0.240163499911330 0.234380649084365 0.232154069875161 0.246744970247032 0.237861238425143 0.244109609310944 0.240876035911196 0.247121091473281 0.257210444269351 0.233507087562965 0.239810238622304 0.231761545777859 0.232993769370167 0.23421502546129 0.238206532022606 0.230647128362785 0.239030732540177 0.236733201607606 0.23279959910902 2 2 - 17485145 17485670 17485381.455 17485136 17487430 - gene protein_coding_gene FALSE TRUE AT2G41890.1 curculin-like (mannose-binding) lectin family protein / PAN domain-containing protein similar to lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34300.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE87106.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain N/apple PAN; (InterPro:IPR003014); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.514135348990305 -2.92680534461406 0.0181174447167539 1 3.78706051517320 12.8053240351682 -0.514135348990305 0.234909427170977
AT1G72610_at 13.3809276622080 13.5424744144167 13.5881539377254 13.5905324597033 13.6359553877409 13.4582359522006 13.3097661891674 13.5286656113386 14.1120968306641 13.8399067793757 14.4871963381008 14.3921685036644 14.3789495496813 14.2588499660667 14.3009424378119 14.1097230004433 13.7478090616252 14.2449836183597 13.7825917187964 0.0644832726009823 0.0610627548796678 0.0676942451257956 0.0643481237898139 0.0620256770623358 0.0678579947839097 0.0630839782583725 0.0647269601785745 0.0660396811450299 0.0621590699016887 0.0613663064370254 0.0610627548796678 0.0612044501686556 0.0631691755554103 0.063386227475641 0.0610627548796678 0.0694308429276149 0.0626916398058158 0.0614733551109009 1 1 - 27343010 27343529 27343229.273 27342776 27343706 - gene protein_coding_gene FALSE TRUE AT1G72610.1 GLP1 (GERMIN-LIKE PROTEIN 1); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP1) Identical to Germin-like protein subfamily 3 member 1 precursor (AtGER1) (At-GERM1) (AtGLP1) (GLP1) [Arabidopsis Thaliana] (GB:P94040;GB:O04751;GB:Q96265); similar to GLP3 (GERMIN-LIKE PROTEIN 3), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT5G20630.1); similar to oxalic acid oxidase [Brassica napus] (GB:AAX35339.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.228153499125154 2.92494430246161 0.0181704774424831 1 3.78439839734682 27.5801437446866 0.228153499125154 0.0562372184803387
AT2G33180_at 7.08942921759442 7.09976704689295 6.00434594282954 6.01101613271545 6.1819361779556 5.77458566179166 7.27873831362598 7.54825787905536 6.76324558284372 6.79881712956752 6.89403315742425 8.48267211019545 6.831982925098 7.45306055506782 8.6145483939302 7.7472612773041 6.72000712522005 6.70307480254445 6.51498536593904 0.218847767416602 0.208960893535791 0.204478224091195 0.204478224091195 0.206952025883036 0.216952263699976 0.204478224091195 0.208368360316073 0.208669882733758 0.2128866041626 0.206362224687824 0.213695948660355 0.205361253768573 0.204478224091195 0.219802076737403 0.206725897532101 0.215379612881009 0.205061406131836 0.208141188978856 2 2|0 +|/ 14073641 14074358 14074074.111 14073540 14074544 + gene protein_coding_gene FALSE TRUE AT2G33180.1 similar to hypothetical protein [Triticum aestivum] (GB:CAJ19336.1); similar to Os09g0481800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063498.1) -0.261298225785583 -2.92450556513250 0.0181830031407532 1 3.78377077622468 13.6850992479567 -0.261298225785583 0.0845539139385511
AT1G32750_at 7.13427653308437 7.8554587944574 7.0780087343775 7.26238423866503 7.31763304464116 7.32171229499734 6.48663532532282 7.20711050346114 7.8437971895713 7.693149951479 7.03294534268626 6.84301295384978 7.01016018339856 7.29461380478967 6.72131598813513 7.69294275589289 6.75101087773643 7.15088178126853 8.34464240327274 0.202995266634324 0.200440060712440 0.215201179046908 0.202793457234679 0.201407498431752 0.218748810347721 0.208214106566284 0.205610693592471 0.210775746280558 0.200440060712440 0.208334110321779 0.202654752158296 0.215894544508363 0.201826983156483 0.211124996969485 0.204550514853941 0.21915030413254 0.205965271425453 0.200440060712440 1 1 - 11846416 11846973 11846666.364 11846227 11856241 - gene protein_coding_gene FALSE TRUE AT1G32750.1 HAF01 (Histone acetyltransferase TAFII250 family); DNA binding Identical to Transcription initiation factor TFIID subunit 1-A (TAFII250-A) (AtTAF1a) (HAF1) [Arabidopsis Thaliana] (GB:Q8LRK9;GB:Q9LPI9); similar to HAF2 (HISTONE ACETYLTRANSFERASE OF THE TAFII250 FAMILY), DNA binding [Arabidopsis thaliana] (TAIR:AT3G19040.1); similar to putative HAC13 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD37451.1); contains InterPro domain TAFII-230 TBP-binding; (InterPro:IPR009067); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.412177549024598 -2.92299245050821 0.0182262701181232 1 3.78160614802973 14.7192225881645 -0.412177549024598 0.179276555360351
AT4G24450_at 6.99993319789311 6.70606741277902 8.5228804310961 8.19450587178804 8.19023805109185 7.39844308423453 7.61665632641124 7.11434746886771 4.43979324962647 6.83416673629876 5.14343629581183 4.48422653854425 5.45069439750009 5.47146894057922 3.14797714109229 5.92664140651279 7.18687203332546 5.56341779275717 5.04513936649490 0.225213498145932 0.223678609400050 0.224570247841380 0.231009193337720 0.231867542210995 0.234414895063781 0.222338857857869 0.222952213411799 0.236287744951627 0.228356720275105 0.222710265709721 0.233217290072223 0.224562010210371 0.23033207180172 0.249495866586918 0.222338857857869 0.229958923724791 0.23144387552305 0.222338857857869 4 4|0 +|/ 12641871 12642608 12642196.8 12635436 12642807 + gene protein_coding_gene FALSE TRUE AT4G24450.1 ATGWD2/GWD3/PWD (PHOSPHOGLUCAN, WATER DIKINASE) Identical to Alpha-glucan water dikinase 2 precursor (EC 2.7.9.4) (GWD2) [Arabidopsis Thaliana] (GB:Q9STV0;GB:Q84W86); similar to SEX1 (STARCH EXCESS 1) [Arabidopsis thaliana] (TAIR:AT1G10760.1); similar to starch associated protein R1 [Solanum tuberosum] (GB:AAK11735.1); similar to Alpha-glucan water dikinase, chloroplast precursor (Starch-related R1 protein) (GB:Q9AWA5); similar to Alpha-glucan water dikinase 2 precursor (GB:Q9STV0); contains domain Glutathione synthetase ATP-binding domain-like (SSF56059); contains domain PHOSPHOENOLPYRUVATE DIKINASE-RELATED (PTHR22931); contains domain no description (G3D.3.30.470.20); contains domain ALPHA-GLUCAN WATER DIKINASE, CHLOROPLAST PRECURSOR (PTHR22931:SF1) 0.412203896095103 2.92292656762176 0.0182281564287924 1 3.78151189419002 12.9611547817229 0.412203896095103 0.179296692407972
AT3G04600_at 7.19760180305607 7.57917018799912 6.2926173952203 7.43922059851859 6.47644707190453 6.38149702296795 7.07227415893539 7.7240977456761 5.40800239248385 5.84434469622673 5.3240583270607 5.59382845860173 5.32967664498357 5.03132195246214 5.50901071889756 5.56748107795618 5.81822151433254 5.73348222223741 6.09244415567715 0.271464681800643 0.272667259108531 0.271218835383436 0.269485857020753 0.270026231638598 0.266315846056103 0.269606424642948 0.282656876052595 0.301143803045311 0.263341085629972 0.268150201981901 0.262680779614307 0.268491765609341 0.269661366354698 0.276569971007567 0.262680779614307 0.275619299271772 0.264414545946756 0.262680779614307 3 3|0 +|/ 1244267 1245919 1244796.2 1242979 1246217 + gene protein_coding_gene FALSE TRUE AT3G04600.1|AT3G04600.2|AT3G04600.3 tRNA synthetase class I (W and Y) family protein similar to Tryptophanyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99449.2); similar to Os12g0540900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066951.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Tryptophanyl-tRNA synthetase, class Ib; (InterPro:IPR002306); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -0.519526209329961 -2.92286609149177 0.0182298881145594 1 3.78142537516441 12.6553568460493 -0.519526209329961 0.238173948597739
AT1G70580_at 9.9881534863864 10.1006350393127 10.6248528471542 10.5627680500861 10.6349043039725 10.0320926048972 11.6457597853061 11.6584763631732 10.4507991406488 10.7890103144529 10.3135893029897 9.8621464708356 10.6263154113738 10.536645136154 9.5091003491385 10.4556080587562 10.7615192610713 10.5756146466741 10.3496498974132 0.139123488590284 0.123814861262340 0.133394986759958 0.129159194297744 0.122227763465462 0.131182234376622 0.130702650584402 0.127917524069948 0.136898036730510 0.125083754182318 0.122227763465462 0.127252389615107 0.122227763465462 0.127949393188281 0.130627730315634 0.122709959147208 0.128267129875828 0.130005186763777 0.126739062627619 1 1|0 +|/ 26618593 26619390 26619015.778 26616295 26619732 + gene protein_coding_gene FALSE TRUE AT1G70580.1|AT1G70580.2|AT1G70580.3|AT1G70580.4 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2); alanine transaminase Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 similar to GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G23310.1); similar to AlaT1 [Vitis vinifera] (GB:AAZ43369.1); similar to AlaT1 [Vitis labrusca] (GB:AAZ43368.1); similar to alanine aminotransferase [Oryza sativa (indica cultivar-group)] (GB:AAO84040.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.29217708578229 -2.92197267666007 0.0182554901307991 1 3.78014720170774 21.0858988669339 -0.29217708578229 0.106685116322826
AT3G10850_at 10.1114754352658 10.1159284722804 10.2735447304778 10.2781271918821 10.4576996503934 10.1624650566463 9.83934760101858 9.77867339164235 9.66708733914657 9.63151857285798 9.85390237399042 9.65578936419224 9.74758196824097 9.6866948559236 10.0006626744769 9.75673619333552 9.7688657173771 9.7094344384794 9.67042491544257 0.095223595686324 0.0953160505402767 0.100646007319371 0.0975053625467312 0.0961745866482148 0.100426861212246 0.095675266345229 0.0975247939308538 0.098049675612629 0.105799211689818 0.0995930353992363 0.0944126497308053 0.0974320277379545 0.103639237288868 0.0968788761717544 0.0937110734327349 0.098997590337906 0.0942275635320313 0.099520167355402 3 3|0 -|/ 3397808 3398699 3398187.889 3397554 3399579 - gene protein_coding_gene FALSE TRUE AT3G10850.1 GLX2-2 (GLYOXALASE 2-2); hydroxyacylglutathione hydrolase glyoxalase II cytoplasmic isozyme (Glx2-2) mRNA, complete Identical to Hydroxyacylglutathione hydrolase cytoplasmic (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLX2-2) [Arabidopsis Thaliana] (GB:O24496;GB:O04844); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.2); similar to unknown [Solanum tuberosum] (GB:ABA46778.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.223858885700543 2.92071293772737 0.0182916527397232 1 3.77834485856558 19.8415587199014 0.223858885700543 0.0521712179060717
AT4G16710_at 6.54632363630686 7.01411782160275 6.95231961801913 7.0023422810819 7.77644092045068 7.04384506624341 6.88264221903658 6.48257927822893 6.10386535175284 6.63741279072055 6.75163362829061 6.92542837627671 6.81297983387489 6.99021101192202 6.46044668367372 6.86241076502883 6.65945487966791 6.75378669400497 6.64846844671212 0.15569456513516 0.150222377886274 0.161321901448168 0.151016987894575 0.152939723138984 0.155746675731469 0.149065445697710 0.153787382570569 0.162248804448128 0.152756795328054 0.157298396297272 0.150339959836232 0.149065445697710 0.152894113839629 0.160746777971521 0.149642780205379 0.154427402454112 0.149065445697710 0.150059785915786 4 4|0 +|/ 9398956 9399611 9399381.333 9398570 9399823 + gene protein_coding_gene FALSE TRUE AT4G16710.1|AT4G16710.2 glycosyltransferase family protein 28 similar to Os02g0467700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046820.1); similar to PREDICTED: similar to glycosyltransferase 28 domain containing 1 [Gallus gallus] (GB:XP_420312.2); contains InterPro domain Glycosyltransferase 28, C-terminal; (InterPro:IPR007235) 0.38805817684281 2.91912491525966 0.0183373445778404 1 3.77607269126077 13.5827227786984 0.38805817684281 0.165814970859667
AT3G02290_at 5.24540723317109 5.61776513469625 6.08179510948814 5.52581431744382 6.5956479557155 6.55255332110800 5.48880226384334 5.86879781511577 5.48234174981927 5.14455409700816 5.44413195104024 5.47912788465049 5.65419198846493 5.9032421508846 4.42967192148451 5.34936662668202 4.96612389780951 5.51051357032679 5.29979811951202 0.228240449343447 0.222338437724513 0.231685680758679 0.218883947738885 0.234527366139315 0.221541380918166 0.219201833208777 0.235027722414182 0.234716788180301 0.222127755414669 0.225511927726398 0.223169023078528 0.227925246517311 0.222424003215615 0.226745408957311 0.220268131759533 0.243863185605644 0.224654645000768 0.220965051915142 3 0|3 /|+ 459684 459947 459776.556 458419 461026 + gene protein_coding_gene FALSE TRUE AT3G02290.1|AT3G02290.2 zinc finger (C3HC4-type RING finger) family protein Identical to Ubiquitin-protein ligase At3g02290 (EC 6.3.2.-) (RING finger protein At3g02290) [Arabidopsis Thaliana] (GB:Q8LE94;GB:Q56XU2;GB:Q9SRU5); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15790.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96851.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15790.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96851.1) 0.333453912185165 2.91894529120927 0.0183425202739615 1 3.77581567257717 11.1975450126716 0.333453912185165 0.133377756594407
AT3G16850_at 8.8834933227921 9.08168688200827 9.20782585135165 9.13640973891892 9.41741116752056 9.35779097595987 9.49389196978817 9.58901828025703 10.2499959630100 9.83035934327198 10.7564107542153 10.5567549269639 10.6829889747304 10.5654368436010 10.4885742004829 10.4431082782602 9.91370640609335 10.4459455392246 10.133074350449 0.0922183393620685 0.0897285404852126 0.0960215279997228 0.0892419862810996 0.0890827663583282 0.0893186868648987 0.0907491736803447 0.0869008588435456 0.0994852137330428 0.0919408936120483 0.0901278888902681 0.0869008588435456 0.0881389437697765 0.0901416333387736 0.0932432850640645 0.0869008588435456 0.0924199814291706 0.0930187318423067 0.0883374308395239 3 3 + 5750397 5750880 5750612.727 5748576 5751303 + gene protein_coding_gene FALSE TRUE AT3G16850.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G06770.2); similar to polygalacturonase-like protein-like [Solanum tuberosum] (GB:ABB55373.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.214154670631239 2.91670855247641 0.0184070961968726 1 3.77261502396992 19.5473205032530 0.214154670631239 0.0413106277145001
AT4G21350_at 5.17805645245713 6.28118792563217 6.18709793253013 6.3004511370516 6.57864593196612 6.56198722753635 5.63751387777126 6.03508566646125 5.1570548478861 4.38427818267183 4.70133984408328 4.45235867601614 5.46408849672361 5.03309500056525 4.42819796989286 5.03458587724029 5.5268085523086 4.7108820030443 4.35597330612659 0.264833683695715 0.261975464993599 0.269640660713381 0.261975464993599 0.266000655424124 0.278511020399767 0.266322264121798 0.261975464993599 0.295233186511117 0.266407551159884 0.270391475558524 0.268958515308803 0.270158712131248 0.268192301360708 0.262572280517108 0.261975464993599 0.288756359009565 0.272854113866572 0.263327848395609 4 4 - 11356165 11356716 11356506.091 11356154 11357278 - gene protein_coding_gene FALSE TRUE AT4G21350.1 B80; binding / ubiquitin-protein ligase similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT3G46510.1); similar to putative armadillo repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03021.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.455284341806693 2.91612686149185 0.0184239283585298 1 3.77178260634171 10.8706807679486 0.455284341806693 0.203888128092041
AT3G49990_at 7.81890446878146 8.18325439550597 7.4734847631822 7.59363553746168 7.75903304549311 7.60629809633308 7.8661276877894 8.24277477567491 7.84878266763242 8.2375124674765 7.91003893794974 8.33226257467247 8.0361065500365 7.77132418882511 8.31224348813458 8.0416695968761 7.84584900794683 7.74293493063207 8.31459370225026 0.168627651189204 0.170601070735358 0.173299424165399 0.179811221311698 0.167757034773971 0.176417556972490 0.167867928799907 0.169966976228605 0.182543950879503 0.175340179927787 0.165851388123875 0.162237693658866 0.160162991449290 0.176841130704170 0.175063185694432 0.163642901505012 0.175983104130716 0.162505618113316 0.17208407873912 3 3 - 18543480 18544039 18543764.545 18543308 18545257 - gene protein_coding_gene FALSE TRUE AT3G49990.1 similar to Os03g0372700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050206.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46214.1); contains InterPro domain Low temperature viability protein; (InterPro:IPR007307) -0.277114212194650 -2.91562461529105 0.0184384744358329 1 3.77106386001534 15.8842807321963 -0.277114212194650 0.0967216234558918
AT2G30740_at 5.29383128434162 5.83951892044151 5.10455637467137 5.11995278204093 7.06220343028455 6.09799260623227 5.84587205211917 5.6555919180958 5.56870681152021 5.80464862185255 6.21819591194016 6.83942563070603 6.13534662218434 6.77697844761918 6.4753644283661 7.05943614316157 5.98247932819131 6.3352388144232 5.99262350484592 0.230914399891221 0.218308145305272 0.238121424503899 0.239381655919178 0.217264200957018 0.225793565962922 0.217550449976303 0.225048070919431 0.230913008451678 0.22397002316329 0.217264200957018 0.217397090708798 0.217464457496026 0.228225148716256 0.218252894766438 0.223867674242483 0.224404664611151 0.224777998386832 0.220492172891827 2 2|0 +|/ 13104559 13105297 13104809.3 13103053 13105671 + gene protein_coding_gene FALSE TRUE AT2G30740.1 serine/threonine protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT1G06700.2); similar to protein kinase Pti1 [Glycine max] (GB:AAO92595.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.438310637154423 2.91530587541425 0.0184477119413127 1 3.77060771495817 11.8856738269768 0.438310637154423 0.194555399364624
AT1G54730_at 5.68567567062593 6.01299519987835 5.87783132808248 6.40872005379834 8.25532322033452 6.80939255793952 6.50017122408224 6.20941357858511 5.64547788896569 6.35952322158785 6.45607174320391 6.67648057473755 6.87413680349282 7.14681663194416 6.12744423494681 7.079007275533 6.58104192385287 6.43537996652221 6.67048768773533 0.232442759306029 0.228725919112953 0.250967410137900 0.227159566570113 0.237879335595819 0.229140699106122 0.234515695909544 0.229416072367194 0.244200906030506 0.22436377507667 0.224938069663623 0.233864287804034 0.227390291836591 0.231998235060692 0.232289442701991 0.229132543019939 0.255878184641942 0.236932519918447 0.232792976175685 1 1|0 +|/ 20430677 20433006 20431874.125 20428077 20433790 + gene protein_coding_gene FALSE TRUE AT1G54730.1|AT1G54730.2|AT1G54730.3 sugar transporter, putative Identical to Sugar transporter ERD6-like 5 [Arabidopsis Thaliana] (GB:Q3ECP7;GB:Q8H197;GB:Q940K3;GB:Q9ZVM0); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT5G18840.1); similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114)|Identical to Sugar transporter ERD6-like 5 [Arabidopsis Thaliana] (GB:Q3ECP7;GB:Q8H197;GB:Q940K3;GB:Q9ZVM0); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT5G18840.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|Identical to Sugar transporter ERD6-like 5 [Arabidopsis Thaliana] (GB:Q3ECP7;GB:Q8H197;GB:Q940K3;GB:Q9ZVM0); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT2G48020.1); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.59131866663101 2.91499163411486 0.0184568237471162 1 3.77015800170795 12.9185455176869 0.59131866663101 0.277116470254763
AT2G21320_at 7.8229301601889 7.91532458014319 8.93299886807092 8.93255981206319 9.03584091208135 8.87096882011152 9.4888416222006 9.68975057950524 7.96505608610364 8.75526600825047 8.34442804966074 8.68039926452872 8.8823614625168 8.5823888685755 8.02056839753977 9.04091335436698 8.78115451054624 8.59460330568154 8.45281537086326 0.138558947419699 0.133961873098130 0.138871033434374 0.136526211478724 0.142309121245845 0.142421313036864 0.151777171295966 0.146804919808236 0.147360556960439 0.140805347000210 0.143932264004312 0.136094591364338 0.135393355995268 0.146746209682755 0.143735781718452 0.142817301187441 0.154945529062351 0.13938600823903 0.143818974066432 2 0|2 /|+ 9134087 9134583 9134374.667 9133344 9134924 + gene protein_coding_gene FALSE TRUE AT2G21320.1 zinc finger (B-box type) family protein similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT4G38960.1); similar to Os04g0493000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053181.1); similar to Os09g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063733.1); similar to H0522A01.9 [Oryza sativa (indica cultivar-group)] (GB:CAH67738.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.219343348755086 2.91464667386833 0.0184668316333894 1 3.76966431940805 17.3396009060037 0.219343348755086 0.0477342791696536
AT1G51980_at 9.28571432592229 9.28648312309292 9.28410467857623 9.30184719884991 8.91770826720878 8.80395100996736 9.43816272589085 9.33642391878215 8.06427963256528 8.67129614741735 9.21034943048188 9.21845083628998 9.1921934860712 9.02633600406574 9.32351855335651 9.05368083445223 8.90189879590682 8.462495670788 8.40587526945523 0.127059395455774 0.127474716824436 0.125249975015222 0.124580501361470 0.121735688866907 0.140257587976587 0.128526127680934 0.129650388720449 0.144320349790279 0.134341952054541 0.127108753123796 0.124155811480393 0.126222630710133 0.124920847959868 0.12121704915395 0.12121704915395 0.133868413189287 0.140134048689688 0.135187383940271 1 1|0 -|/ 19327384 19328809 19328254.375 19327051 19330585 - gene protein_coding_gene FALSE TRUE AT1G51980.1|AT1G51980.2 mitochondrial processing peptidase alpha subunit, putative Identical to Probable mitochondrial-processing peptidase alpha subunit 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) [Arabidopsis Thaliana] (GB:Q9ZU25;GB:Q8L9K3); similar to MPPALPHA (mitochondrial processing peptidase alpha subunit), metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT3G16480.1); similar to Mitochondrial-processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) (Ubiquinol-cytochrome-c reductase subunit II) (GB:P29677); similar to Os01g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044193.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765)|Identical to Probable mitochondrial-processing peptidase alpha subunit 1, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 1) [Arabidopsis Thaliana] (GB:Q9ZU25;GB:Q8L9K3); similar to MPPALPHA (mitochondrial processing peptidase alpha subunit), metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT3G16480.1); similar to Os01g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044193.1); similar to mitochondrial processing peptidase [Solanum tuberosum] (GB:CAA56520.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.204169266754559 2.9122620616774 0.0185361666260953 1 3.76625143651136 17.9213489733226 0.204169266754559 0.0265890404172967
AT3G07950_at 5.49346213819349 5.49025418989726 5.49279103119999 5.37808417776059 5.9653503838355 5.23935661463137 6.0216925061704 5.10965268842941 4.22258593010915 4.6407999346583 5.79783736146613 6.24230449712224 5.51459054073907 5.39411692055441 6.00551843162332 5.37360535142859 5.55458428667772 4.56210037257556 5.05945756028 0.240846344591389 0.234380313684626 0.241704481549313 0.238379792524299 0.239088961181951 0.253521656786860 0.234380313684626 0.237393527421967 0.267542678670389 0.248360399512708 0.236229911380305 0.235054527585394 0.239460396841181 0.236149205398666 0.247016414401761 0.234380313684626 0.245663773505376 0.253366709302193 0.252076725210502 3 3|0 +|/ 2532884 2533787 2533434.5 2531858 2534510 + gene protein_coding_gene FALSE TRUE AT3G07950.1 rhomboid protein-related similar to rhomboid protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96055.1); similar to Os03g0358200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050146.1); similar to Os07g0655400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060496.1); contains domain FAMILY NOT NAMED (PTHR13377); contains domain SUBFAMILY NOT NAMED (PTHR13377:SF4) 0.452382291554225 2.91122998324388 0.0185662585729259 1 3.76477420809659 10.6220954805760 0.452382291554225 0.202706894405036
AT3G55030_at 6.79385312554894 7.25312185038712 6.31029414413826 6.20810768464195 7.46906334718635 7.48750924686194 7.9303816909821 7.48948529055844 6.91856498500847 7.0630184539083 7.17902685585853 7.01750202526405 6.70350016962805 7.32384843388452 7.02096625429898 6.80436370084136 6.63299860724634 6.77522073018084 7.1116185185883 0.194994674659571 0.185889323387619 0.183544264115916 0.189969810959938 0.189663286937204 0.202198877844817 0.191601338671818 0.1888657638784 0.19138661428278 0.186724162562071 0.182119018244748 0.184876543948292 0.181501447149419 0.192453981455643 0.183201728710477 0.188653059820362 0.203049823189246 0.181879384478466 0.197408075085350 3 0|3 /|+ 20408341 20409134 20408820.333 20407737 20409630 + gene protein_coding_gene FALSE TRUE AT3G55030.1 PGPS2 (phosphatidylglycerolphosphate synthase 2); CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase Encodes a phosphatidylglycerolphosphate synthase. similar to PGPS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE+SYNTHASE+1), CDP-alcohol phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39290.1); similar to phosphatidylglycerolphosphate synthase [Vigna unguiculata] (GB:ABA55724.1); similar to Os03g0283600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049756.1); contains InterPro domain CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; (InterPro:IPR004570); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) -0.298427927840025 -2.91059004356862 0.0185849423786165 1 3.76385822122106 14.0993498806975 -0.298427927840025 0.111630281629704
AT2G22720_at 7.6263095319859 7.6344438651841 7.86714699404276 7.65630578916911 8.43717584565178 7.85688001496406 7.88975132369127 7.49148572565942 7.33510633883295 7.61522370112199 8.37300070084393 8.0974518961258 8.02354510616317 8.1392037730115 8.0833473519438 8.28518395402589 7.4153985573557 7.52407127644937 7.9744131176318 0.166483045288734 0.164479705737763 0.167109875955527 0.170317773657138 0.164411579146720 0.174892188223538 0.164411579146720 0.171515038943944 0.180376145061497 0.171149042076938 0.164411579146720 0.164411579146720 0.169252086399016 0.182577916649445 0.165873247082978 0.167066806793314 0.176934707893067 0.174260445987346 0.172105978426083 2 2|0 +|/ 9666778 9667345 9666978.6 9664424 9667856 + gene protein_coding_gene FALSE TRUE AT2G22720.1|AT2G22720.2|AT2G22720.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37860.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96797.1); similar to conserved hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95431.1); similar to Os11g0296800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067723.1); contains InterPro domain Chromatin SPT2; (InterPro:IPR013256) 0.322474411893868 2.91024301611956 0.0185950823715522 1 3.76336148819682 15.6245530760530 0.322474411893868 0.127154429212932
AT1G02816_at 5.87068651070945 6.61157316409371 7.04731039215593 7.34056752512989 7.56330157557896 7.3583831030112 8.0082244705967 8.17879602017947 6.59156050800226 6.19584042394583 7.78456353351863 6.32232650070134 7.32781867758819 7.05370377887909 6.29317537544657 7.11999368806398 6.9252289170681 7.06698038931941 6.54018755262779 0.254748331264485 0.250018666958669 0.251092632073552 0.256759028409067 0.257478977871889 0.258423961659865 0.246466672662053 0.261710081386504 0.268817932731841 0.259203199086798 0.248848455770014 0.248887545161073 0.250931578326097 0.257015609152930 0.249030940183215 0.246943541801139 0.273153477986165 0.259269415733733 0.251088483696197 1 1 + 621672 622045 621839.909 621461 622469 + gene protein_coding_gene FALSE TRUE AT1G02816.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02370.1); similar to Os05g0362300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055314.1); similar to Protein of unknown function, DUF538 [Oryza sativa (japonica cultivar-group)] (GB:AAX95409.1); similar to Os05g0362500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055315.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.352132485144347 2.90955407005783 0.0186152299962695 1 3.76237531351151 13.9619820213978 0.352132485144347 0.145407013627111
AT3G11710_at 9.46702646613103 9.4022185128001 9.33245634930315 9.41812068602266 9.27195835309136 9.04804484572659 9.3753041056563 9.31143637647403 9.19565148260466 9.17320866027732 8.76967315480658 8.91707446103554 8.67551032937066 8.59726022736028 9.24376797187075 8.8428836021048 9.08196531334714 8.88181358555166 9.1921334458549 0.110319041250911 0.106200901603136 0.109938104361507 0.102581248347274 0.107478462697842 0.113454770099405 0.103838986418503 0.108014480845329 0.129246891120455 0.104807482969669 0.112620027531296 0.105905334581239 0.105403643956132 0.112765725652595 0.114023359341823 0.103423154158785 0.109050094721991 0.108903335958788 0.106456805747504 3 3|0 -|/ 3702486 3703018 3702743.889 3702175 3705720 - gene protein_coding_gene FALSE TRUE AT3G11710.1 lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative Identical to Lysyl-tRNA synthetase (EC 6.1.1.6) (Lysine--tRNA ligase) (LysRS) [Arabidopsis Thaliana] (GB:Q9ZPI1); similar to OVA5 (OVULE ABORTION 5), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT3G13490.1); similar to Lysyl-tRNA synthetase, class-2; Aminoacyl-transfer RNA synthetase, class II [Medicago truncatula] (GB:ABE86616.1); similar to Lysyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97356.1); similar to Lysyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97357.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364); contains InterPro domain Lysyl-tRNA synthetase, class-2; (InterPro:IPR002313) -0.216052794480392 -2.90900611661459 0.0186312704933752 1 3.76159093891539 18.3599414336973 -0.216052794480392 0.0443758844582081
AT3G02340_at 7.51760652503753 7.92643274412242 7.6799918929872 7.85949403588577 7.95787025583079 8.10795410063099 7.25907936087839 7.40036112114678 7.13666379170524 6.85162529789417 7.17832956651322 7.20799024413942 7.08988395962672 7.48346786619644 6.77892788164486 7.31072178308705 7.2755333140234 7.00664019401407 7.074157519386 0.181000254460939 0.183655347331518 0.177375608030483 0.180605792471708 0.188420772299638 0.190262094921596 0.177243531610718 0.189064194215783 0.190625502963674 0.193739315386496 0.179727911014216 0.178852874447130 0.18090098542076 0.181198121020699 0.182127482635990 0.177840642105864 0.177243531610718 0.181555813858331 0.192281389299079 3 3 + 477752 478238 478014.091 477010 478449 + gene protein_coding_gene FALSE TRUE AT3G02340.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G15820.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96854.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.26053947418229 2.90792284442312 0.0186630235977613 1 3.76004022305189 14.8072249483070 0.26053947418229 0.0851044749968836
AT1G11580_at 8.11592614772539 8.28523490767808 5.5981028514144 6.46656726322851 6.59709226027451 6.5042436811395 8.25530806366871 8.70802767586543 6.07937149905307 8.09173901926617 8.32274183207296 8.82927372835404 8.28133424392557 8.75358852587378 8.44906777879275 8.5450802689232 7.7455445839794 8.53174939488511 7.366397502847 0.170355984083002 0.160326888934202 0.203126918217954 0.181438752045662 0.178050076235428 0.170833851263913 0.166077950683288 0.172229084197507 0.188465903480078 0.1735683375431 0.162547102936500 0.162560126124708 0.160326888934202 0.165135357396888 0.18376253149553 0.160326888934202 0.174712391835713 0.173645059114437 0.184176781668614 1 1 + 3890098 3890484 3890235.625 3888690 3890811 + gene protein_coding_gene FALSE TRUE AT1G11580.1 pectin methylesterase, putative similar to pectin methylesterase, putative [Arabidopsis thaliana] (TAIR:AT1G11590.1); similar to pectin methylesterase [Sesbania rostrata] (GB:CAD29733.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.398247240254034 -2.90527891357500 0.0187407576667365 1 3.75625511450384 15.1220462988691 -0.398247240254034 0.172749108038895
AT1G01140_at 11.2118167577719 11.2048327242556 11.2479334250682 11.2148810320986 11.1020013739513 11.0197335763905 10.7835033723363 10.701343672264 10.7746111149521 10.5833070357234 9.6975455922457 9.76596762231752 9.9133996625869 9.9804034807756 9.38613598903432 10.4818239188173 10.1290919676819 9.85288332149824 10.0631455515347 0.110240287870338 0.108851163562552 0.107638067077285 0.107214715048173 0.109844073951040 0.111007120177844 0.111044232787715 0.111468414376156 0.119990016737011 0.106840602238609 0.114756967229216 0.109351103457346 0.121405198023336 0.106077928084010 0.127268740713860 0.106077928084010 0.115162414459984 0.120375558536315 0.113122374856486 1 1|0 -|/ 64415 65574 65052.1 64166 67625 - gene protein_coding_gene FALSE TRUE AT1G01140.1|AT1G01140.2|AT1G01140.3 CIPK9 (CBL-INTERACTING PROTEIN KINASE 9); kinase Encodes a CBL-interacting protein kinase with similarity to SOS2 similar to CIPK23 (CBL-INTERACTING PROTEIN KINASE 23), kinase [Arabidopsis thaliana] (TAIR:AT1G30270.2); similar to CBL-interacting protein kinase 13 [Populus trichocarpa] (GB:ABJ91220.1); similar to CIPK-like protein 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93761.1); similar to CBL-interacting protein kinase 12 [Populus trichocarpa] (GB:ABJ91219.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.201009118073427 -2.90514791940201 0.0187446176913387 1 3.75606756965225 21.2480529143203 -0.201009118073427 0.0209527996787677
AT3G27380_at 9.06723368039648 9.34136095207898 9.41467858234658 9.46800216427941 9.04208219851773 9.05881721067493 9.24074326986368 9.17936866609272 8.18572989473952 8.22320662511193 8.75429159176128 8.81450867228379 8.18185156634611 8.3935700166322 8.0660792291557 8.2950905747628 8.68804131630076 8.86260206305 7.90736744616872 0.182277433929103 0.177754789772630 0.182560818759509 0.191736544057774 0.182668885606502 0.179878747240647 0.183288839815083 0.181646423033219 0.190081479530559 0.189021645546788 0.192819593687297 0.182617401542940 0.193399288420111 0.181453812215644 0.190399263397253 0.187294300819243 0.198436625482589 0.183289300572433 0.186641565736468 3 3 - 10132449 10133615 10133176.364 10132197 10133997 - gene protein_coding_gene FALSE TRUE AT3G27380.1 SDH2-1 (succinate dehydrogenase 2-1) One of three isoforms of the iron-sulfur component of the succinate dehydrogenase complex, a component of the mitochondrial respiratory chain complex II. The product of the nuclear encoded gene is imported into the mitochondrion. Expressed during germination and post-germinative growth. Identical to Succinate dehydrogenase [ubiquinone] iron-sulfur protein 1, mitochondrial precursor (EC 1.3.5.1) (IP) (SDH2-1) [Arabidopsis Thaliana] (GB:Q8LBZ7;GB:Q9G3M0;GB:Q9LTZ2); similar to SDH2-2 (succinate dehydrogenase 2-2) [Arabidopsis thaliana] (TAIR:AT5G40650.1); similar to Os08g0120000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060876.1); similar to succinate dehydrogenase [Triticum aestivum] (GB:CAD62367.1); contains InterPro domain Alpha-helical ferredoxin; (InterPro:IPR009051); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Fumarate reductase, C-terminal; (InterPro:IPR012285); contains InterPro domain Succinate dehydrogenase/fumarate reductase iron-sulfur protein; (InterPro:IPR004489); contains InterPro domain Ferredoxin; (InterPro:IPR001041) 0.220144060146612 2.90360672520313 0.0187900939147785 1 3.75386096014275 17.5327553575946 0.220144060146612 0.0495662115843618
AT1G09230_at 5.12523407540341 5.11133490228737 5.80233717837403 5.2469113233875 4.88451345560251 4.65015242736906 6.53373948399593 5.46097224743993 4.56577396818173 4.33866864043951 3.94058681030102 3.59580491321733 4.34231742266264 4.03506599301479 3.51020651326675 3.99636537741923 4.81491758668479 4.16852920967915 4.8293710514072 0.232400503880254 0.243815000350466 0.239955028709166 0.243280323679724 0.232888492475901 0.239916307854855 0.245998986812647 0.235907136278503 0.244198188404261 0.242072030003826 0.230337584437104 0.234184404005712 0.235136471894436 0.234029707574464 0.241440272726175 0.229240956120875 0.229240956120875 0.237849733391983 0.230328116121158 1 1|0 -|/ 2979643 2980898 2980274.778 2979522 2982626 - gene protein_coding_gene FALSE TRUE AT1G09230.1 RNA recognition motif (RRM)-containing protein similar to Os03g0326600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049993.1); similar to RNA-binding re (GB:NP_001016017.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.469652619746909 -2.9027662501422 0.0188149418566532 1 3.75265754855696 9.6661054442109 -0.469652619746909 0.212965944937567
AT3G03740_at 7.13756304180504 7.06182053759738 7.06624880153535 7.01094215056072 7.48525515597784 7.03018409683504 6.99526507733696 6.85243860628574 5.45888338532171 5.70685568780632 6.2111029299425 5.75220766870703 5.9243109373823 6.33961467866748 5.98146370582503 6.13960624168558 6.05483845287478 5.99211062961079 5.83908019692095 0.240893161918096 0.237301220972499 0.233422618141742 0.234891791692707 0.238519132834361 0.256366679066446 0.231293314904739 0.226835363975102 0.239657563098405 0.229494934602848 0.225746261600045 0.227856265687352 0.234591110426385 0.229450079563866 0.232254382279885 0.225746261600045 0.226595405326210 0.238887633681008 0.228057807705331 3 3|0 -|/ 937259 937769 937526.9 936885 939815 - gene protein_coding_gene FALSE TRUE AT3G03740.1 ATBPM4 (BTB-POZ AND MATH DOMAIN 4); protein binding similar to ATBPM5 (BTB-POZ AND MATH DOMAIN 5), protein binding [Arabidopsis thaliana] (TAIR:AT5G21010.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.258759775520784 2.90243237521932 0.0188248219917141 1 3.75217948724481 12.9388046812934 0.258759775520784 0.0841203790260029
AT2G20420_at 9.93013478020472 9.86394890532205 9.99810708264664 10.0648184126833 9.69381213169808 9.57023754541845 9.77723033658547 9.77927587459386 8.85436228192562 9.1360987172721 9.37112880339727 9.51712346020485 9.24707429121822 9.29736241984239 9.70119859498968 9.30742021399517 9.33115084740147 9.17322018509732 8.87564809056829 0.0872420216482563 0.0882629112980673 0.0875884908667226 0.086405095386715 0.0867994487199177 0.089084835633414 0.0873752338266544 0.0869838011084717 0.0965519586471112 0.0853318503023583 0.086723143059079 0.088018023526204 0.0844770436068028 0.0906300303753132 0.0879744305077699 0.086286186127544 0.0901272542873176 0.0933389393611717 0.0881203987933412 2 2|0 +|/ 8813994 8814798 8814307.25 8812534 8815201 + gene protein_coding_gene FALSE TRUE AT2G20420.1 succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial, putative / succinyl-CoA synthetase, beta chain, putative / SCS-beta, putative Identical to Succinyl-CoA ligase [GDP-forming] beta-chain, mitochondrial precursor (EC 6.2.1.4) (Succinyl-CoA synthetase, beta chain) (SCS-beta) [Arabidopsis Thaliana] (GB:O82662); similar to ACLA-1 (ATP-citrate lyase A-1) [Arabidopsis thaliana] (TAIR:AT1G10670.2); similar to succinyl CoA ligase beta subunit-like protein [Solanum tuberosum] (GB:ABC01911.1); similar to succinyl CoA ligase beta subunit [Lycopersicon esculentum] (GB:AAO22150.1); similar to Os02g0621700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047463.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Succinyl-CoA synthetase, beta subunit; (InterPro:IPR005809); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP-citrate lyase/succinyl-CoA ligase; (InterPro:IPR005811) 0.203468237182364 2.90016387461381 0.0188920940292040 1 3.74893114521297 18.9964854079476 0.203468237182364 0.0268685599442532
AT4G13270_at 7.2975872755535 8.22887649609445 8.29547077745343 8.43833674562882 8.688289059837 8.01014669742552 8.02381021293376 8.1905950968246 6.90264873090777 6.31942205537205 7.06436681732013 7.11841850708926 7.23015117181276 6.90763396228017 6.74647850493577 6.94210870121939 6.67449066855671 6.85287134895209 6.16697534218976 0.250945873639154 0.239813624339389 0.252980350686216 0.248581977068403 0.2418094184873 0.257721107970411 0.239813624339389 0.239813624339389 0.242643349723319 0.250481050686271 0.239813624339389 0.239813624339389 0.245156701121865 0.250965979694847 0.247793296371847 0.242164258861647 0.282233247727813 0.243074366090161 0.246893066419498 4 4 + 7731287 7731819 7731535.909 7731185 7733197 + gene protein_coding_gene FALSE TRUE AT4G13270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52330.1); similar to Os03g0696000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050978.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO19373.1) 0.45094656692444 2.89912125390353 0.0189230958902647 1 3.74743808123698 14.8491792134325 0.45094656692444 0.202954431083478
AT4G33220_at 9.70127235976995 9.79157978239958 9.52429711105363 9.5624912257017 10.326820325345 10.2747826196496 10.3038840947458 10.4625693779582 10.8882271237250 10.6044098999295 11.7988990075001 11.5432819080767 11.3558763159563 11.5393384573908 11.2167290928353 10.9349321672606 10.8292916574171 10.7620195409213 10.5781817318061 0.0994629524080405 0.0911260284644239 0.0980167808529235 0.0985124351376636 0.0935912728800907 0.0954142728004968 0.095563457238417 0.0920363009965866 0.102395506023591 0.0947089275872072 0.0935102476508213 0.0920798768658948 0.0926211602865493 0.0932638214045724 0.0957907676257806 0.0910510004411823 0.0944533986938275 0.0931156042092158 0.0912066169303862 4 4|0 +|/ 16025406 16026077 16025842.3 16022442 16026364 + gene protein_coding_gene FALSE TRUE AT4G33220.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G43270.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.207272258326019 2.89865771538934 0.0189368958416957 1 3.74677426001773 20.9623715805312 0.207272258326019 0.0335133047789336
AT1G67850_at 7.8556334162132 8.09864191750481 7.8246303313118 7.27633195647067 6.24213066568972 5.96801577024511 6.44725623144087 6.01880955260524 5.31984520130186 5.27066774014915 4.87682427784053 5.12176334571128 5.03973848022158 4.7288322095506 4.53023376475712 5.04339470149074 5.24991942419294 5.03966130698042 5.45154435052368 0.247574394664509 0.248945755756727 0.250259734963439 0.253771042860191 0.245980530292301 0.245980530292301 0.24874044958022 0.249707407219158 0.249979932477478 0.252055011841345 0.260445588177872 0.245980530292301 0.249769387976136 0.245980530292301 0.251972478216447 0.253428201249331 0.260736426931651 0.248411004271266 0.248493750542159 1 1|0 +|/ 25444343 25445537 25444871.7 25441563 25445805 + gene protein_coding_gene FALSE TRUE AT1G67850.1|AT1G67850.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13000.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.335432295163390 -2.89792511545884 0.0189587271525053 1 3.74572509774310 12.1170054149359 -0.335432295163390 0.136086315848697
AT1G21380_at 8.76384405127088 8.41598397256155 8.73022256656411 8.47704975507628 8.96690758038454 8.91776705141131 8.54722623950179 8.23280124005734 7.83644679695626 7.7587662891383 7.94284541169519 8.30079618251185 7.82608639097274 7.92786291518446 7.8808665096177 7.38244654434822 7.9163250718102 7.88872143716511 7.28606610898667 0.142180320504555 0.138299485848691 0.134339804062212 0.134641112750303 0.138148913385938 0.142054685210564 0.136437497008688 0.141599335837538 0.147046659134290 0.135395487846421 0.141347313960554 0.134570065075527 0.145490217893868 0.135184053107484 0.152346554594574 0.141779420839496 0.146097052999430 0.140934675820622 0.137679652240124 1 1 - 7485927 7486290 7486121.818 7485625 7488702 - gene protein_coding_gene FALSE TRUE AT1G21380.1 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76970.1); similar to VHS and GAT domain protein [Glycine max] (GB:ABB90835.1); similar to Os11g0199700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067438.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.269586802698641 2.89649137071058 0.0190015275376266 1 3.74367173077554 16.3866437435736 0.269586802698641 0.0926094686574638
AT1G29460_at 5.60767785159551 6.37182129776881 6.8289155919656 6.9286105517337 8.00992981428661 7.69222330764438 7.68645400255717 7.87066428862783 7.33512658623612 7.5301164337427 8.41823993277862 8.0900434133759 8.2319496009497 8.00847693510962 8.06669444869615 8.26333133453652 7.18414948763349 7.56511209247282 8.3861583596978 0.215432606003707 0.196362219135469 0.206370740609734 0.213458032354604 0.193727577045663 0.201437881677797 0.200116300390474 0.193559197748274 0.212969839489919 0.194234062449341 0.198110238189599 0.199304682660200 0.198107180192336 0.21303109656346 0.199501541429815 0.197466764789621 0.214242421472133 0.203875947935749 0.199203147487900 1 1 - 10307604 10307943 10307761.545 10307493 10308129 - gene protein_coding_gene FALSE TRUE AT1G29460.1 auxin-responsive protein, putative similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G27780.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.354398992702738 2.89641020125241 0.0190039535992381 1 3.74355547873383 14.9890204793989 0.354398992702738 0.147728805319237
AT1G05030_at 6.32811093808743 6.46820581739022 5.85361129389194 5.71667282612204 6.02020961003233 6.01437543048192 6.44311915639148 6.23416936001478 6.07738448146003 6.21056857332068 6.28445885939727 6.92604442746313 6.16692035513004 6.29998925476974 5.93297956168106 6.69349210345086 6.3083025875039 5.47766166127956 6.41175887815224 0.249740048109218 0.234449702685989 0.235452319316106 0.237244483987285 0.241059935378451 0.240745903327478 0.239335472506591 0.247239105200579 0.253115228861405 0.237949253784091 0.239464254760345 0.236993216746882 0.242366450452022 0.243159951726704 0.232382690063252 0.236951244687514 0.243770694609342 0.247366496614452 0.237617073827812 1 1|0 -|/ 1438386 1439254 1438693.111 1438151 1441416 - gene protein_coding_gene FALSE TRUE AT1G05030.1 hexose transporter, putative Identical to Probable plastidic glucose transporter 1 [Arabidopsis Thaliana] (GB:Q0WVE9;GB:Q5XF02;GB:Q9ZVN7); similar to GLT1/PGLCT (GLUCOSE TRANSPORTER 1), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT5G16150.3); similar to putative hexose transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD26445.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.219595118741062 -2.89623454069846 0.0190092049842995 1 3.74330389391826 12.3820435102076 -0.219595118741062 0.0495772992700324
AT3G05500_at 8.76188746579966 8.86805409242962 9.0740127679222 9.19404243915907 8.1791353453391 8.37812928902676 9.04134888875057 9.11102683877435 7.95575970714953 7.86925565433281 8.59523347961374 8.70358977835467 8.74146029611775 8.45092007301717 8.6735615841117 8.5078563194883 8.07568753063473 8.37560868261174 7.70591465782338 0.129725844680164 0.129824131398459 0.132691875870996 0.131915481721637 0.131378344310246 0.140331101046421 0.134271680106951 0.134594004431813 0.150260962220227 0.144222552227825 0.140420837501877 0.132533657101561 0.129725844680164 0.134200994688439 0.134117271769266 0.133176157299234 0.1414890879992 0.139118553005388 0.136623565088389 3 3 + 1594005 1594707 1594462.727 1593440 1595021 + gene protein_coding_gene FALSE TRUE AT3G05500.1 rubber elongation factor (REF) family protein Identical to REF/SRPP-like protein At3g05500 [Arabidopsis Thaliana] (GB:Q9MA63); similar to rubber elongation factor (REF) protein-related [Arabidopsis thaliana] (TAIR:AT2G47780.1); similar to Stress-related protein (GB:Q9SW70); contains InterPro domain Rubber elongation factor; (InterPro:IPR008802) 0.216298508574188 2.8959726427948 0.0190170372194099 1 3.7429287948318 17.0055211697813 0.216298508574188 0.0458291360968607
AT2G47830_at 5.49790123119635 5.36087742579324 5.32044597910194 4.91610675860435 5.8437815041083 5.51032045705025 4.52983960042983 4.47134299118099 4.11536657520932 4.18645031160169 3.90997388999067 4.89809048005367 4.23397639478794 4.83220387975265 3.67273939445429 4.50591458363069 4.30767524787792 4.10484678686356 4.29004202132901 0.246125602495775 0.242516029116419 0.245128469088636 0.244044649672899 0.242495305442429 0.266490845039389 0.240150552626551 0.247338477255204 0.259401664183539 0.238955747074627 0.241006288481109 0.247780882558467 0.238955747074627 0.239399991411883 0.251518840205981 0.241925984825301 0.260328626871173 0.239821529329629 0.252280424040625 2 2|0 -|/ 19598180 19599205 19598568.556 19597926 19601067 - gene protein_coding_gene FALSE TRUE AT2G47830.1|AT2G47830.2 cation efflux family protein / metal tolerance protein, putative (MTPc1) Identical to Metal tolerance protein C1 (AtMTPc1) (MTPC1) [Arabidopsis Thaliana] (GB:Q8L725;GB:O82250); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G79520.1); similar to cation diffusion facilitator family transporter [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] (GB:YP_903918.1); similar to Os03g0346800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050094.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) 0.271782321014596 2.89515642054263 0.0190414682499101 1 3.7417597483449 9.43405893587804 0.271782321014596 0.0942923795952992
AT1G02860_at 6.18758306367213 6.48888543473603 7.36880757766444 7.47551128302551 8.62510505230577 7.32455457963604 7.32291625830812 7.35230435753382 6.72472535087143 6.79570494218052 6.82886352160641 6.70506244418224 7.38437457580562 7.06114353299003 6.61164739000593 7.27564510474527 6.95938157625657 6.95676414636587 6.96282871224695 0.218785593889815 0.217660011737996 0.216921941776982 0.221782696018965 0.240971304042088 0.219595672129352 0.219482868508362 0.227060834918112 0.23347642738068 0.218299874915167 0.214128082914244 0.212729372561980 0.217660016147724 0.214480189336944 0.221307255825880 0.218182088756691 0.237572240128353 0.217658198018739 0.212729372561980 1 1|0 +|/ 636134 637050 636485.9 635144 637262 + gene protein_coding_gene FALSE TRUE AT1G02860.1 SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related similar to SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related [Arabidopsis thaliana] (TAIR:AT2G38920.1); similar to Zinc finger, RING-type; SPX, N-terminal [Medicago truncatula] (GB:ABE85047.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.502839814661926 2.89489654980732 0.0190492534471793 1 3.74138753661028 14.1685150949908 0.502839814661926 0.231819882862273
AT3G08920_at 9.03962866564167 9.28792601718116 8.43079321387479 8.5029811921897 9.41135949503973 9.1372279015483 9.60632562748696 9.59065357614694 10.0757173902776 9.85356776686404 10.1911544755997 10.1199589855133 9.72951899003086 10.0398159895261 10.1113806841972 9.58949355043157 9.6860999831787 9.67428663863272 9.6285542635469 0.127584419894899 0.128235476315187 0.138462547834891 0.141602571117543 0.118375328906516 0.138527405125396 0.127541828648649 0.124654767526865 0.126699141698060 0.122836249041764 0.12121039172743 0.120225043532176 0.123210037341724 0.119968391419982 0.125954383841391 0.119888194720039 0.134000710943883 0.122767835005883 0.127180599227792 3 3|0 +|/ 2712355 2713089 2712622.5 2712242 2713275 + gene protein_coding_gene FALSE TRUE AT3G08920.1 rhodanese-like domain-containing protein similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G42220.1); similar to Os09g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062759.1); similar to Os03g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049793.1); similar to Os02g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047318.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.235221249520887 -2.89380429847283 0.0190820109660624 1 3.73982306757709 18.9985253623228 -0.235221249520887 0.0652708471942704
AT2G03870_at 9.38523549742979 9.53732550499738 9.51131024676403 9.6247546961386 9.51253168479025 9.35577098177041 9.08057480552838 9.3184728095126 9.33711217331952 9.06119817314804 9.54190548551169 9.63585402268727 9.45607499876616 9.51812000965288 9.41544117263254 9.74882104961206 9.12610007733635 9.36965007228659 9.17094645925265 0.110797313337154 0.109848446188176 0.108176570771316 0.11154579233166 0.106156468363396 0.117652922239700 0.108642416082596 0.108124538586859 0.116461900229128 0.113303427847204 0.107906811905931 0.105413639682319 0.105926201767490 0.112596306592600 0.105201467344749 0.108524685521260 0.124380689594315 0.110154278819843 0.111316127770816 2 2|0 +|/ 1180438 1181226 1180925.125 1179981 1181434 + gene protein_coding_gene FALSE TRUE AT2G03870.1|AT2G03870.2 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE84930.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.228716670243040 2.89320644586481 0.0190999656445332 1 3.73896671401133 18.7488710931835 0.228716670243040 0.0592368899388677
AT1G22730_at 5.750829263954 5.64739265916504 4.9316646273536 5.10664524099608 5.23674756005312 5.1875414530327 5.38232828668928 4.61684427130022 4.87515389551867 3.99769120262203 5.85709557284491 5.61250129539622 5.27241831792709 5.45656532461698 5.49478454259425 5.74566091695509 6.0277670461194 3.68713575783629 4.5898941970716 0.196306280205739 0.204933866902068 0.201201286894482 0.199586521443167 0.192280028868987 0.200485416440610 0.192280028868987 0.196406811654971 0.199839565934045 0.197690466087304 0.199151712293346 0.198625014024395 0.196178901947997 0.200540754276602 0.209857438544040 0.196159631889402 0.196371104155459 0.212539847690291 0.192280028868987 1 1 + 8048162 8048724 8048449.364 8046138 8049028 + gene protein_coding_gene FALSE TRUE AT1G22730.1 MA3 domain-containing protein similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63190.2); similar to Os03g0222100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049417.1); similar to Putative topoisomerase [Oryza sativa (japonica cultivar-group)] (GB:AAN05329.1); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) 0.33648121589863 2.88963707621482 0.0192075237147162 1 3.73385359046712 10.1734096012465 0.33648121589863 0.137325648922572
AT1G29450_at 5.9099479223895 6.06932612388752 6.21366285913755 6.5331225072864 7.13605969052134 7.10033544494345 6.82741585342315 6.74650598746843 7.34926743706693 6.93828465181043 7.88143067589856 7.61997935590427 7.80126615249284 7.30895912112221 7.68472228079661 7.46010631802224 7.29177378666701 7.09177794928355 7.94007850161437 0.140697926997544 0.138699818901259 0.142625016783943 0.144342697574884 0.132493166310089 0.136002114063769 0.131255072602663 0.133482901401377 0.138994698297513 0.138614618573437 0.135811264753759 0.135356051177592 0.140323811396018 0.137231098743632 0.134905883819963 0.136856925720591 0.142578511719688 0.139434941480440 0.147656741640638 1 1 - 10305985 10306294 10306145.818 10305937 10306485 - gene protein_coding_gene FALSE TRUE AT1G29450.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G29510.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.232893955936434 2.88699801573312 0.0192874494573653 1 3.73007267471594 14.0304031245592 0.232893955936434 0.0636498972948809
AT2G23780_at 6.82325844148204 7.12196509988176 6.80687451469309 7.11036598079827 7.49104462217768 7.30358553528157 6.66961044431099 7.16713655561593 7.24784953113616 6.7978822303826 7.40540519111349 7.15737895352832 7.3594330736476 7.78198562127011 7.18383440581438 7.25208168153872 6.85741166621464 7.37712241821882 6.70948241605218 0.169746178074532 0.171803500982901 0.180907973124110 0.179504382018602 0.18874634072335 0.17752822892411 0.190457375027154 0.169663717027331 0.176881044874082 0.171216693266596 0.174174188748244 0.174522828675113 0.177687511923496 0.176862685419204 0.174097463942387 0.177880967374291 0.198015806223004 0.179229636213698 0.176850784459630 2 2 - 10130710 10131190 10130997.182 10130386 10131716 - gene protein_coding_gene FALSE TRUE AT2G23780.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G19310.1); similar to putative zinc finger protein [Capsicum chinense] (GB:CAJ13712.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.305450964238126 2.88675473555040 0.0192948345964763 1 3.72972411373450 14.1693483254178 0.305450964238126 0.117881336016341
AT2G01490_at 9.42977350922587 9.47868783764403 9.90809946857194 9.81697418503648 10.2998824041257 10.0562239497269 9.64314752182623 9.44225327638344 9.30536022595703 9.02665011039535 9.0525688653831 8.72577455413693 9.26573858495992 9.19230306010145 8.90918774349795 9.1681978271093 9.21922070016586 9.14044921266533 9.12768472133573 0.0954023373165685 0.0903413189932162 0.0909756758611035 0.0925895120992216 0.0978581304051144 0.0976142687117478 0.0934289232339496 0.094929973990224 0.0922399921561402 0.0916315747068646 0.09425310439841 0.0923211344030411 0.0919905700459177 0.0964474532240641 0.0933445116163458 0.0952973067796512 0.0934018334730018 0.0985390700620417 0.0975670414391066 2 2 + 222107 222957 222525.545 221245 223417 + gene protein_coding_gene FALSE TRUE AT2G01490.1 phytanoyl-CoA dioxygenase (PhyH) family protein similar to putative LN1 protein [Oryza sativa] (GB:AAK50124.1); contains InterPro domain Phytanoyl-CoA dioxygenase; (InterPro:IPR008775) 0.226388924100905 2.88606359377513 0.0193158311562286 1 3.72873385871549 18.8780861462668 0.226388924100905 0.0575063457633959
AT1G06410_at 9.73525289006098 9.70196460015802 9.8170822577512 9.8479830528068 10.1196515881708 9.71183941905733 9.79889821977526 9.81351197427005 10.0942133627081 10.0705420978008 10.5988408019639 10.3173738055644 10.6307175804533 10.6510132429704 10.1491562553314 10.5055016417857 10.2981624168182 10.2112369904839 9.98455633614029 0.100960005930020 0.0954639028357724 0.100497460266601 0.100211235380579 0.096114957640437 0.0982080341547655 0.100460112590751 0.0986785289002644 0.102637875282854 0.0972839033299021 0.0994266731564848 0.0951514175904683 0.0953577201026368 0.0990241002036411 0.104079203825387 0.0966863803732178 0.0947846857642586 0.096956267897599 0.098320855440741 1 1 + 1957496 1958126 1957805.909 1955412 1958755 + gene protein_coding_gene FALSE TRUE AT1G06410.1 ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to putative trehalose synthase [Solanum tuberosum] (GB:AAL91978.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.241105950709412 2.88533594908336 0.0193379621008939 1 3.72769127436255 20.0532834706585 0.241105950709412 0.0710551778968883
AT3G62030_at 12.2617882200544 12.2923942112161 11.6572726399066 11.5736520306062 11.7658192862507 11.5729740944394 12.5744651871316 12.6488997649594 12.8565733062491 12.8628248339915 13.1491622169138 13.5380090629388 12.6859462753336 12.9177473787599 13.7909490329578 13.1141771667665 12.7442155982205 13.1487354898255 12.5434088626890 0.0551071579116107 0.0544041304673545 0.0554625392897046 0.0546805247986626 0.0575088435686763 0.0567960063648972 0.0581462505119851 0.0547910294583267 0.0583294468758196 0.0545152665141078 0.0563716049720215 0.0547886236483702 0.0539966948071974 0.0619290143867142 0.0567539913267613 0.0550386711520419 0.0598771259083805 0.0538368709531733 0.0558795154077456 3 3|0 +|/ 22985060 22986090 22985646.444 22984558 22986345 + gene protein_coding_gene FALSE TRUE AT3G62030.1 ROC4 (rotamase CyP 4); peptidyl-prolyl cis-trans isomerase nuclear-encoded chloroplast stromal cyclophilin (ROC4) Identical to Peptidyl-prolyl cis-trans isomerase CYP20-3, chloroplast precursor (EC 5.2.1.8) (PPIase CYP20-3) (Rotamase cyclophilin-4) (Cyclophilin of 20 kDa 3) (Cyclosporin A-binding protein) (CYP20-3) [Arabidopsis Thaliana] (GB:P34791;GB:Q8LBZ9;GB:Q9FPH5); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT5G13120.1); similar to putative peptidyl-prolyl cis-trans isomerase, chloroplast precursor [Oryza sativa (japonica cultivar-group)] (GB:BAB39968.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.210054278150824 -2.88510536748045 0.019344980573847 1 3.7273608861588 24.9886015686661 -0.210054278150824 0.0389503367959352
AT3G01170_at 6.47378495018833 6.95521626640457 6.88429151390146 6.64025060368904 6.82948949935627 6.88195912860326 6.10247492713285 6.14925364268356 5.19045636789096 4.53852150043349 5.04447576481723 4.78460049399828 4.80320189484869 5.15221227226601 4.8327221187716 4.99661827462884 5.30164010981777 4.89703141387299 4.74325936667241 0.236116358267492 0.216944643620657 0.212510315080127 0.211709535508742 0.224875570246281 0.229366743852311 0.228156100677637 0.217290316780167 0.225992303001822 0.213850283625878 0.215711708628972 0.208347249899819 0.209254530258284 0.212850543536381 0.208347249899819 0.209607816690238 0.220951313219852 0.218906247953707 0.220738396784409 3 3 + 58109 58653 58388.909 57648 58916 + gene protein_coding_gene FALSE TRUE AT3G01170.1 structural constituent of ribosome similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G15260.1); similar to AT5g15260/F8M21_150 [Medicago truncatula] (GB:ABE80371.1); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) 0.270649477165284 2.88451409146636 0.0193629899075904 1 3.72651366454747 11.5149110020999 0.270649477165284 0.094195386000301
AT4G00360_at 10.2199569150716 10.5007720525954 10.5762808308971 10.6971852618147 11.4713003283648 11.1512016091422 11.3645279063860 11.5075240968649 11.3445274723366 11.3553384369060 12.1643614152073 11.8552361758351 11.8771622890566 11.9183105428364 11.3644793724146 11.2806245940742 11.1402084568347 11.6990386763215 11.0000596149069 0.101361621863679 0.0954481836761043 0.105414940030502 0.102993977272437 0.0988414279785904 0.102395087125182 0.0941681114687675 0.0965593637292612 0.102010979369325 0.0949259635494942 0.0965837457005564 0.0954594313286163 0.095607873982414 0.0993750703424822 0.09932655085882 0.0941681114687675 0.102934868185934 0.0983687491686372 0.0941681114687675 4 4 + 162227 162751 162481 160768 163023 + gene protein_coding_gene FALSE TRUE AT4G00360.1 CYP86A2 (ABERRANT INDUCTION OF TYPE THREE GENES 1); oxygen binding Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at moderate levels in flowers, leaves, roots and stems. Identical to Cytochrome P450 86A2 (EC 1.14.-.-) (CYP86A2) [Arabidopsis Thaliana] (GB:O23066); similar to CYP86A4 (cytochrome P450, family 86, subfamily A, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G01600.1); similar to CYP86A8 (LACERATA), fatty acid (omega-1)-hydroxylase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT2G45970.1); similar to CYP86A7 (cytochrome P450, family 86, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G63710.1); similar to cytochrome P450 monooxygenase CYP86A24 [Glycine max] (GB:ABC68403.1); similar to cytochrome P450 [Triticum aestivum] (GB:AAG17470.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE91393.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.252457973548989 2.88369753434112 0.0193878893545341 1 3.72534361269588 22.3839617243283 0.252457973548989 0.0805003949799539
AT2G26730_at 6.79853995476658 6.60897664125027 4.18861519241647 4.57819913592396 5.67926570788134 5.00328100808234 6.43256407168247 6.64376004554004 5.09848333714528 5.92716909427997 7.16758280608154 7.78631862725767 6.42022558922185 7.31090611410115 6.79632620617211 6.42017864614043 5.54629628575429 5.88922641240115 5.77635306254523 0.275591592150810 0.276937413367453 0.277669124096107 0.280435961345056 0.273972686849921 0.284121743796323 0.274093946957186 0.296997957332308 0.298669854553281 0.273972686849921 0.274455181608541 0.278169309209460 0.277735153113273 0.286840338066119 0.280573738192193 0.273972686849921 0.287348181083495 0.280670804550345 0.274186498938674 2 2 + 11397849 11398305 11398062.273 11395485 11398719 + gene protein_coding_gene FALSE TRUE AT2G26730.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58300.1); similar to receptor-like protein kinase 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD52827.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.346077914666348 -2.88310665233611 0.0194059278148704 1 3.72449690980891 11.8755507616336 -0.346077914666348 0.143673829048886
AT3G06040_at 5.73536412509664 6.03702820733094 4.95695191325977 5.19689822695914 5.59181437083308 5.56436228454508 5.92093250738677 6.2355920827686 5.23723301148944 5.12957468396287 5.28358390581972 5.59436199725332 5.14569566056155 5.13988533075667 6.08163542306077 5.20994962282475 5.16495025396217 5.07004744590074 5.23485621130612 0.209713771697148 0.215253214672249 0.213348161645674 0.215582695281276 0.210627878672389 0.210420008437866 0.211922892689264 0.216254809075859 0.208006559170863 0.206594002114539 0.207204814454875 0.20463952517346 0.205778619386275 0.20463952517346 0.224936631431593 0.205361397563717 0.211794031518598 0.208297708055474 0.208789927861773 3 3 - 1824602 1825038 1824876.455 1824382 1825669 - gene protein_coding_gene FALSE TRUE AT3G06040.1|AT3G06040.2|AT3G06040.3 ribosomal protein L12 family protein similar to ribosomal protein L12 family protein [Arabidopsis thaliana] (TAIR:AT1G70190.1); similar to unknown [Solanum tuberosum] (GB:ABA40429.1); contains InterPro domain Ribosomal protein L7/12, oligomerisation; (InterPro:IPR008932); contains InterPro domain Ribosomal protein L7/L12; (InterPro:IPR000206) -0.259506731157577 -2.87983034102655 0.0195062613404638 1 3.71980178086277 10.9232771350743 -0.259506731157577 0.08623953363392
AT3G46450_at 5.82171378307687 6.12734084198605 6.41768191674604 6.99610491111622 7.3795716354021 6.82313061301943 6.94291539481805 7.21727709539532 5.46277599053784 6.38241136585247 5.8505017320771 6.09788852909428 6.64343553551116 6.56614647414223 5.6018974862105 6.04037375579211 7.12158493832131 6.66835682979128 6.06000673997158 0.217037584278763 0.216467881006382 0.231234590124154 0.213238698754937 0.228358337771637 0.229263451867535 0.223366368673694 0.228377531113307 0.230596573738918 0.219561083453855 0.217792936573807 0.217975131498426 0.213238698754937 0.213238698754937 0.214861300328747 0.218945343225084 0.224646814708201 0.219547519595655 0.216751938112495 3 3|0 -|/ 17104321 17104959 17104564 17103923 17106624 - gene protein_coding_gene FALSE TRUE AT3G46450.1|AT3G46450.2 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Os03g0820900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051723.1); similar to hypothetical protein SPAC3H8.10 [Schizosaccharomyces pombe 972h-] (GB:NP_593003.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251)|similar to phosphatidylinositol transporter [Arabidopsis thaliana] (TAIR:AT2G21540.2); similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Os03g0820900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051723.1); similar to hypothetical protein SPAC3H8.10 [Schizosaccharomyces pombe 972h-] (GB:NP_593003.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.366092809124371 2.87880849721191 0.0195376634217087 1 3.71833730458098 12.8618026200641 0.366092809124371 0.156026032461726
AT3G51050_at 8.31505426946749 8.35009905335963 7.91269504209298 8.16161814705275 8.687691566153 8.23360498509275 8.65450241267622 8.47616423068158 8.09370804906423 7.39254936660938 7.02593471934809 7.27615153101291 7.26585319532688 7.48061283991787 7.03844990055003 7.27806220763033 7.00198921595368 7.07542522330467 7.08093546281242 0.229808138057988 0.218767231136792 0.223172626971818 0.229703550446279 0.218767231136792 0.228518354856821 0.218767231136792 0.218767231136792 0.229312382339091 0.224497302172797 0.218767231136792 0.218767231136792 0.218767231136792 0.222536192570447 0.223254096241838 0.218814272324229 0.23421763274685 0.218767231136792 0.218767231136792 3 3 + 18968001 18968652 18968379.818 18964904 18968937 + gene protein_coding_gene FALSE TRUE AT3G51050.1 FG-GAP repeat-containing protein similar to Os02g0100700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045583.1); similar to hypothetical protein DDBDRAFT_0202478 [Dictyostelium discoideum AX4] (GB:XP_643541.1); contains InterPro domain FG-GAP; (InterPro:IPR013517) -0.27107016423991 -2.87756063821707 0.0195760817667424 1 3.71654883343185 15.7002824534683 -0.27107016423991 0.0949737458533706
AT4G12000_at 5.02396211450374 5.34520775936710 6.08898615411955 5.70026865360435 5.15704091047312 4.99888151612325 7.2530224356848 7.19067525686554 4.71197358715393 5.44802741022703 5.20135476612605 4.80033480861446 5.13624450537457 5.23327571078823 5.08980623226878 5.82769023886177 5.96992581501759 4.78627496463838 5.05791902083058 0.246250110497974 0.236330093210829 0.245337160950603 0.245776810638791 0.241849114312691 0.251861868951551 0.247795200024102 0.238578991682777 0.257298646403503 0.237900678979434 0.243278516906142 0.236477344569730 0.243837342588881 0.244786398023159 0.245222331634449 0.235136887260754 0.235622020558286 0.237324772472625 0.240979803250692 4 4 - 7193637 7194265 7194036.545 7193264 7195146 - gene protein_coding_gene FALSE TRUE AT4G12000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22850.1); similar to At1g12450-related [Medicago truncatula] (GB:ABE81486.1); contains domain UNCHARACTERIZED (PTHR12677) -0.266974604442259 -2.87596235588234 0.0196254024243316 1 3.71425800193830 11.0088822932336 -0.266974604442259 0.0920939663808175
AT1G74040_at 6.42505012149856 6.24065471106618 6.14072712323213 5.59845749011285 5.77615043811174 5.95815452090575 6.67942057568356 6.5747493168021 7.00412116759012 6.42797610805582 6.84082031723549 7.15642056683181 6.47223462330145 7.02540281730662 7.15337038878342 6.92791061812199 6.07933732000246 6.64161687554079 6.80952977366268 0.214382248179506 0.193629677161537 0.212571548925381 0.204714853665173 0.198096882333024 0.215714953680059 0.208650147649397 0.200183514134387 0.205133155872021 0.221127595126061 0.193629677161537 0.197849871127837 0.200889955932262 0.196618257345403 0.195177483756466 0.196693554399581 0.232709091113289 0.200873413384098 0.200737973990478 1 0|1 /|+ 27848196 27849200 27848724.889 27845832 27849437 + gene protein_coding_gene FALSE TRUE AT1G74040.1 IMS1; 2-isopropylmalate synthase Encodes an active Arabidopsis isopropylmalate synthase IPMS2. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS2 can be compensated by a second isopropylmalate synthase gene IPMS1 (At1g18500). similar to IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT1G18500.1); similar to 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) (GB:O04973); similar to 2-isopropylmalate synthase 1 [Brassica insularis] (GB:ABA26446.1); similar to Putative 2-isopropylmalate synthase [Brassica oleracea] (GB:AAW81741.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891); contains InterPro domain LeuA allosteric (dimerisation) domain; (InterPro:IPR013709); contains InterPro domain Bacterial 2-isopropylmalate synthase; (InterPro:IPR005671); contains InterPro domain Alpha-isopropylmalate/homocitrate synthase; (InterPro:IPR002034) -0.285833056858844 -2.87479351625224 0.0196615521142221 1 3.71258260760554 12.9413446408400 -0.285833056858844 0.105568959261697
AT2G13690_at 5.05806648880565 5.22921238059328 4.40630156753378 3.98963139011336 4.5440483849146 4.78253203891272 4.72712917632585 5.29584514231899 5.01866271030218 5.40116624265874 5.41544425722090 5.73831484313577 5.11287249518592 4.7745828085587 5.68931775566553 5.0888621359257 5.3624181432239 5.64417105935671 5.65766348780352 0.213473474084517 0.221782536902567 0.215915856906211 0.217386478732293 0.211945820305788 0.219639378529584 0.214371131322997 0.219721236639311 0.224689845507879 0.220395211733210 0.221479312936634 0.217743272008961 0.215120360092182 0.221631289755195 0.223215044077188 0.215643091564088 0.223123780210322 0.219024797677158 0.211986248885016 2 2 - 5713811 5714336 5713995.818 5713589 5716039 - gene protein_coding_gene FALSE TRUE AT2G13690.1 PRLI-interacting factor, putative similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT1G63850.1); similar to Os04g0278000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052356.1); similar to Os07g0259700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059321.1); similar to f13j11 PRLI-interacting factor G, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96017.2) -0.326425580639832 -2.87443781555289 0.0196725667748369 1 3.71207273795059 10.1103018632926 -0.326425580639832 0.132159531582299
AT2G19560_at 4.83630186312878 5.33156184566738 4.82538276034821 5.19091142234609 5.8009483093659 5.23779315425337 5.15183762100833 5.55249312086117 4.29625972359534 3.79118970206094 4.90683663618551 4.83743342235083 5.1022864626731 4.52498874123941 4.49654050674891 4.90352131152016 4.41228655377234 4.66129123637571 4.00701378574998 0.257418633059589 0.255346826312546 0.254950587424311 0.259744825945789 0.253978498137430 0.263613076695423 0.243072939376876 0.243072939376876 0.248640372579898 0.253176688868510 0.243625054899771 0.244067131519461 0.247381958789187 0.253993841780916 0.252861707546135 0.243072939376876 0.245658170769325 0.247681101477913 0.25344135037744 2 0|2 /|- 8473429 8475297 8474403.375 8472855 8476198 - gene protein_coding_gene FALSE TRUE AT2G19560.1 proteasome protein-related similar to Transcription-associated recombination protein-Thp1p (ISS) [Ostreococcus tauri] (GB:CAL54827.1); similar to Pcid2 protein [Mus musculus] (GB:AAH06047.1); similar to Os09g0386400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063074.1); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.372435335317403 2.87385276825195 0.0196906972272575 1 3.71123410288512 9.62197168511924 0.372435335317403 0.160163209648700
AT4G07390_at 8.33199499973457 8.78601503619065 8.72152060980869 8.92151489808065 9.2551279149445 8.6058056624784 8.18639339608605 7.6228823031375 7.46806866815476 6.90128123967954 7.41436983014743 7.30870304141738 7.2525003928533 7.06733585464975 7.11815485221462 7.46227879902784 7.1582058084696 7.51512550229881 7.07140852096952 0.251001292132918 0.252502237257492 0.258798340516250 0.256374483352125 0.256362588890927 0.257394519995223 0.245732908075538 0.265633275001611 0.255086962502693 0.253920037821053 0.247301794505829 0.245732908075538 0.256825157579671 0.246595208437583 0.247526802749379 0.247383073753135 0.264453964868977 0.269742879283612 0.255765325592819 4 4|0 +|/ 4195862 4197261 4196614.5 4195677 4197568 + gene protein_coding_gene FALSE TRUE AT4G07390.1 PQ-loop repeat family protein / transmembrane family protein similar to PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana] (TAIR:AT5G59470.1); similar to Os07g0479200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059633.1); similar to Cystinosin/ERS1p repeat [Medicago truncatula] (GB:ABD32623.1); contains InterPro domain Cystinosin/ERS1p repeat; (InterPro:IPR006603) 0.392167810703885 2.87314038515812 0.0197127970156568 1 3.71021291397556 15.7709087207590 0.392167810703885 0.171777658458681
AT3G06080_at 8.42751600711376 8.59279011041038 8.51143353428488 8.38357124650667 9.17148464730863 8.84714107021866 9.10442624792525 8.99316341648483 8.42310544503885 8.68963678406188 8.9359852447347 8.3570306101038 8.56845700610575 8.25981497254364 7.968416508431 8.2806070022457 7.98898460127227 7.56237213242926 8.88375709856142 0.137437224882600 0.135775394914300 0.138748392339951 0.134017819524890 0.146142451832266 0.142914506739455 0.142004453439532 0.141443800397752 0.144708891129149 0.134017819524890 0.134017819524890 0.134092630821174 0.142682614333787 0.148676552147408 0.144458018000636 0.136766329981047 0.142268571251882 0.150265538010867 0.134017819524890 3 3 - 1835481 1836089 1835828.636 1834713 1837990 - gene protein_coding_gene FALSE TRUE AT3G06080.1|AT3G06080.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19160.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91480.2); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.238178793528979 -2.8719299268316 0.0197504068529321 1 3.70847768110928 17.2067949278420 -0.238178793528979 0.0694901142630949
AT1G20575_at 6.80147040238156 7.06493664188462 6.75758101289519 7.20281711287806 7.48665277295675 7.24692381708793 6.68267510357908 6.78661182112324 6.12062667791411 5.87860806656429 6.14778410503281 6.05355832692038 6.07349678719503 6.0922074103498 6.27138634912943 6.49528649802296 6.04855589868373 6.16487911379418 5.85724576153432 0.195403042870477 0.192227161596948 0.192700106019725 0.193328075392419 0.187661688918919 0.196364746206173 0.192030335153956 0.192451984543907 0.198257973708104 0.190753693122025 0.192111578940047 0.187661688918919 0.187661688918919 0.206302036886207 0.192549657578624 0.187661688918919 0.200637828839025 0.192308608437029 0.195466924252431 1 1|0 -|/ 7126990 7128069 7127548.571 7126762 7128735 - gene protein_coding_gene FALSE TRUE AT1G20575.1 dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative similar to glycosyl transferase family 2 protein [Arabidopsis thaliana] (TAIR:AT2G39630.1); similar to dolichyl-phosphate mannosyltransferase polypeptide 1 [Homo sapiens] (GB:NP_003850.1); similar to Dolichyl-phosphate mannosyltransferase polypeptide 1, catalytic subunit [Homo sapiens] (GB:AAH08466.1); similar to Os03g0824400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051751.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.277902164591246 2.87104032014788 0.0197780946927106 1 3.70720235056140 13.0639858255043 0.277902164591246 0.100300437523050
AT3G48890_at 8.66918014796936 8.65377358104265 8.5928507631032 8.95005787932987 8.36630258415099 8.4169362250289 8.1804280440856 8.37845320133769 7.21171133385013 7.35356318522493 7.49443654682784 7.67548408060094 7.41068007166157 7.81269369772477 7.79279279250216 7.36955607609651 7.82869710038263 7.32141750798506 7.09183742287254 0.181057178289391 0.175627901068365 0.17644202518561 0.179299182781602 0.172085106831327 0.176728282616837 0.178811425825526 0.175243647693603 0.182560786148796 0.173584039054162 0.169049520145347 0.169764550217303 0.170972898303225 0.178746299012199 0.174385191989888 0.177616246670307 0.175684508959218 0.174876740299243 0.187115573926685 3 3 + 18140772 18142225 18141517.545 18140586 18142558 + gene protein_coding_gene FALSE TRUE AT3G48890.1 ATMP2 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3); heme binding / transition metal ion binding putative progesterone-binding protein homolog (Atmp2) mRNA, Identical to Putative steroid-binding protein 2 (AtMP2) (MP2) [Arabidopsis Thaliana] (GB:Q9M2Z4;GB:Q9XFM5); similar to MSBP1 (ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5) [Arabidopsis thaliana] (TAIR:AT5G52240.1); similar to putative steroid membrane binding protein [Triticum aestivum] (GB:ABB90550.1); similar to Os10g0502600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064993.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.24013026976728 2.8706573306048 0.0197900270435898 1 3.70665328804909 15.9296263273586 0.24013026976728 0.0712707968337905
AT1G26550_at 10.825766980548 10.8008371010618 11.1539408749963 11.2145949867982 11.0101948121980 10.7844750635208 10.9250865212521 10.7036627605736 10.4216265049622 10.3781894802954 10.5724517965483 10.5038395294123 10.551498132926 10.5431342605877 10.2468326419822 10.6420398536885 10.9016388588266 10.5502285199866 10.2326524680125 0.0740696986995371 0.073471360166268 0.0763696736869684 0.0723817147959869 0.0754500824065886 0.0756004166430945 0.0743627887182667 0.0741394707010333 0.0791850526790645 0.0740751648254742 0.076205915176523 0.0728151223839456 0.0756949161653088 0.0832398138214313 0.0781680011337939 0.0741466755013425 0.0738313270394971 0.0742662247006546 0.0723817147959869 1 1|0 +|/ 9171789 9172517 9172189.222 9171117 9172927 + gene protein_coding_gene FALSE TRUE AT1G26550.1 peptidyl-prolyl cis-trans isomerase PPIC-type family protein similar to PIN1AT (parvulin 1At) [Arabidopsis thaliana] (TAIR:AT2G18040.1); similar to Os09g0411700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063153.1); similar to putative peptidyl-prolyl cis-trans isomerase [Gossypium hirsutum] (GB:AAY41234.1); contains InterPro domain PpiC-type peptidyl-prolyl cis-trans isomerase; (InterPro:IPR000297) 0.223382445837112 2.8682395940634 0.0198655248797354 1 3.70318698849719 21.3813769377860 0.223382445837112 0.0558830747664291
AT4G18910_at 6.67609723238918 7.2501545038789 6.42973946866677 6.3372993410758 7.99132011137225 7.79011691917445 7.31709969407439 7.46595130567613 7.08809268273286 6.90058757019613 7.72485421336295 8.32695566793855 7.28526538998937 8.27491019402674 7.43297299716505 7.04703371622668 6.42033911872404 7.4340536054018 6.62458187540223 0.214268309463075 0.214268309463075 0.228268548586121 0.226500510748339 0.217487155509297 0.224562533308294 0.217322581102963 0.222794704902052 0.227080108399822 0.214268309463075 0.214268309463075 0.214268309463075 0.221682590389590 0.214268309463075 0.225525289145426 0.214268309463075 0.224311180341603 0.225923338017365 0.215271189486105 4 4|0 +|/ 10366666 10368163 10367687.556 10366070 10368392 + gene protein_coding_gene FALSE TRUE AT4G18910.1 NIP1;2/NLM2 (NOD26-like intrinsic protein 1;2); water channel Identical to Aquaporin NIP1.2 (NOD26-like intrinsic protein 1.2) (Nodulin-26-like major intrinsic protein 2) (AtNLM2) (Protein NLM2) (NodLikeMip2) (NIP1.2) [Arabidopsis Thaliana] (GB:Q8LFP7;GB:O49406); similar to NLM1 (NOD26-like intrinsic protein 1,1), water channel [Arabidopsis thaliana] (TAIR:AT4G19030.1); similar to nodulin26-like intrinsic protein [Pisum sativum] (GB:CAB45652.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.291002006405829 2.86823229303110 0.0198657533151296 1 3.70317652057283 14.3394150665209 0.291002006405829 0.109548721943521
AT2G36130_at 7.670691814147 7.671169587558 7.03456794922316 7.03652366719585 7.78797748248383 7.89231881928978 7.25950372539973 7.46114017726287 7.68737556876093 7.67247896672795 7.36039883679928 7.28925881951403 7.23346262476349 7.32961867758389 7.36964507333682 7.36122081621348 7.23258211305898 7.19361150277198 7.54974300572684 0.170610213484006 0.156962177403735 0.178791189859968 0.162498623983841 0.162271969699384 0.171397229915771 0.156962177403735 0.162867784268441 0.165248628702609 0.16238166107358 0.162385707321039 0.160795948777695 0.165905491107355 0.168120597776285 0.164485656835624 0.156962177403735 0.172144178120066 0.162125121570272 0.159146482500935 2 2|0 +|/ 15173951 15175156 15174460.25 15173852 15175569 + gene protein_coding_gene FALSE TRUE AT2G36130.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G44600.1); similar to peptidyl-prolyl cis-trans isomerase [Brassica rapa] (GB:ABK78697.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.209043526138535 -2.86779291325400 0.0198795056512417 1 3.70254655053688 14.9431153136919 -0.209043526138535 0.0392908128921337
AT3G48000_at 11.6015030213385 11.6778668394058 12.0975469580766 12.0902730350218 12.1620586081408 11.9153595355808 12.0465092511747 11.9717832370703 11.4044065835572 12.0285072887440 11.8578522933366 11.5098074983603 11.9121984408807 11.8846755732299 11.6464273012747 11.9702633117703 12.1416840364927 11.9303693287222 11.5741042490153 0.076391368958265 0.0762611462151799 0.0722070269557012 0.072219519606495 0.0728078734412886 0.0770786214870265 0.0731201333546901 0.0736403649624824 0.0797728927492547 0.071918091817542 0.0745317825087785 0.0734996743609692 0.071918091817542 0.071918091817542 0.0769259274752736 0.071918091817542 0.0735844821704254 0.0763167447492585 0.074426129164514 3 3|0 -|/ 17728073 17729030 17728434.6 17727852 17731005 - gene protein_coding_gene FALSE TRUE AT3G48000.1 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) putative (NAD+) aldehyde dehydrogenase (At3g48000) mRNA, Identical to Aldehyde dehydrogenase 2B4, mitochondrial precursor (EC 1.2.1.3) (ALDH2a) (ALDH2B4) [Arabidopsis Thaliana] (GB:Q9SU63;GB:Q42090); similar to ALDH2B7 (Aldehyde dehydrogenase 2B7), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT1G23800.1); similar to aldehyde dehydrogenase [Vitis pseudoreticulata] (GB:AAZ79355.1); similar to aldehyde dehydrogenase 1 precursor [Lotus corniculatus] (GB:AAO72532.1); similar to aldehyde dehydrogenase [Vitis pseudoreticulata] (GB:AAZ79358.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.214773814763640 2.86751803172010 0.0198881142698917 1 3.70215242822502 23.7081954424498 0.214773814763640 0.0465413305037085
AT3G04790_at 11.4667774121200 11.5627002291674 11.3079546404733 11.2456612804197 10.9284858199179 10.9171845108216 12.0021046874811 12.2371006482153 11.7703998251743 11.9883663413523 12.1127130244310 12.419970764397 11.9506263864541 12.1642755486927 12.3811520309117 12.3401848047028 11.7426056964478 11.9688879926374 11.7763425350346 0.0740397378288315 0.0717763432110403 0.0719119441825581 0.0730290679562989 0.073447937669971 0.0794698541956903 0.0758619892254052 0.0723194228755673 0.0923657088542166 0.0729081137605599 0.0723190935875589 0.0720566425082219 0.0736112974597411 0.0730232808412188 0.0800573554428467 0.0717763432110403 0.0764042029876221 0.0785382721821214 0.0755547982091826 3 3 + 1313624 1314148 1313881.455 1313322 1315249 + gene protein_coding_gene FALSE TRUE AT3G04790.1 ribose 5-phosphate isomerase-related similar to ribose-5-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G01290.1); similar to putative ribose-5-phosphate isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAC83440.1); similar to Os07g0176900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059023.1); contains InterPro domain Ribose 5-phosphate isomerase; (InterPro:IPR004788) -0.213666692053615 -2.86697150617086 0.0199052415186617 1 3.70136881386406 23.4485402860461 -0.213666692053615 0.0452704089819222
AT4G22740_at 9.24927415088148 8.99997949895355 9.61918140303288 9.46178916561922 9.58776166714068 9.44303578398232 9.07578383343263 8.95309283448214 8.92307447883546 8.90249408204321 9.01451037067547 8.68020082804244 8.97834164247321 8.72117706675505 8.68089368881836 8.92142532746735 9.17686390370058 8.75701589672432 8.78054966368829 0.100480184980832 0.101579737977846 0.101647832225264 0.101475106761771 0.0988827662829234 0.101853136633611 0.100664521083552 0.103094953111363 0.114106399244738 0.104140848882751 0.102097549112937 0.0988827662829234 0.104742266932957 0.102089656946490 0.100653067024545 0.0988827662829234 0.10599123629456 0.109941175737505 0.107883958819357 4 4|0 -|/ 11944102 11944874 11944526.4 11943860 11945967 - gene protein_coding_gene FALSE TRUE AT4G22740.1|AT4G22740.2 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45380.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71223.1) 0.228003470616387 2.86545014309172 0.0199529986484121 1 3.699187385237 18.1662421249095 0.228003470616387 0.0606725807079712
AT1G79410_at 5.30741966178945 5.59249586661268 5.3739527571436 5.60225383075373 5.79520890971682 6.19870364969562 6.42529912860485 6.3289367138055 4.23946897905204 4.90363666197085 4.84701881787879 5.18788986116519 5.27772918328725 5.25004376699788 4.30106570527896 6.02725747982326 4.81102000221302 4.59034084579404 3.82840502271889 0.221842964736291 0.221077022767951 0.222992425904791 0.220244717814842 0.216223663636613 0.221658782693021 0.218578218381379 0.221024630848886 0.227422471155003 0.221857029770221 0.220087383074432 0.220083629446616 0.216223663636613 0.216345004420841 0.216223663636613 0.217620293678625 0.221516501259590 0.219774793445392 0.220683749768267 1 1 - 29872938 29873444 29873174.727 29872773 29874526 - gene protein_coding_gene FALSE TRUE AT1G79410.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G16370.1); similar to Os07g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059989.1); similar to putative organic cation transporter [Oryza sativa (japonica cultivar-group)] (GB:BAC83382.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.270850382007598 2.86535812148427 0.0199558910802195 1 3.6990554348797 10.5082251126246 0.270850382007598 0.095648291605963
AT1G71900_at 5.44993322643471 5.53356273286496 5.85892700838652 5.85694093715891 6.15838597279341 5.67913820600057 6.12607457053943 5.99918338630143 5.10458883801922 5.31224548969435 5.76055468442194 5.81391003195662 5.13712251577531 5.57959236264042 5.86527800786485 5.75932876836649 5.43206951708656 5.41414364535259 5.14780266336042 0.207577523796677 0.202614822939346 0.210547116796567 0.206755661463379 0.212232962314276 0.219315487402338 0.206377711723619 0.210795721635984 0.211008062897497 0.202330683422459 0.213429847588327 0.202572188884947 0.203688437053785 0.215753518645177 0.204321311508169 0.207193650582885 0.204376175896854 0.210427672893431 0.208993791561230 1 1|0 +|/ 27066538 27067668 27066934 27065148 27068158 + gene protein_coding_gene FALSE TRUE AT1G71900.1 similar to permease-related [Arabidopsis thaliana] (TAIR:AT1G34470.1); similar to Os01g0882300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045007.1); similar to Non-imprinted in Prader-Willi/Angelman syndrome re (GB:ABA91886.2); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.259098581687413 2.86415995201643 0.0199935914759394 1 3.69733733241875 11.2244993910805 0.259098581687413 0.087006686532682
AT1G77490_at 8.99255575064542 9.41775657014873 8.37935455400805 8.65184261471163 9.21492291943207 8.78755382729055 10.1877969226674 9.99739264445717 10.0704318437285 10.1151239236346 10.6245798218975 10.7137272833876 10.0118448131185 10.2956632263273 10.2573187551743 10.6173436784080 9.79378326754566 10.2420727741879 9.93104246052579 0.163163162013541 0.156357642727619 0.169217928703383 0.168162417567966 0.162789831127625 0.162661453367444 0.162052429175033 0.157851226779767 0.162149756832451 0.168018705254386 0.161543187329511 0.160848901920588 0.166730538728564 0.168743816542720 0.164072621794878 0.161018963930021 0.181375942082739 0.159752538132845 0.170606266703499 1 1|0 +|/ 29123848 29124913 29124548 29122436 29125109 + gene protein_coding_gene FALSE TRUE AT1G77490.1 TAPX; L-ascorbate peroxidase Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to L-ascorbate peroxidase T, chloroplast precursor (EC 1.11.1.11) (Thylakoid-bound ascorbate peroxidase) (tAPX) (AtAPx06) (APXT) [Arabidopsis Thaliana] (GB:Q42593;GB:Q9CAQ6); similar to SAPX, L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT4G08390.2); similar to thylakoid-bound ascorbate peroxidase [Brassica oleracea] (GB:BAD14931.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.304890683288106 -2.86339235005127 0.0200177825888274 1 3.69623659895126 19.3828508646545 -0.304890683288106 0.119136995695271
AT1G64610_at 5.29094471574072 5.68412666845234 6.36454749573637 6.56862247673664 5.86616255546522 5.5120400940496 4.3102438451269 4.05760337877698 4.66931543120588 4.73836781194801 4.11024224823521 3.59989321104279 4.04272145053596 4.16433168154824 3.90288866268385 4.24288398615376 4.03038231985489 4.05372799705251 4.64958133069431 0.272822702226260 0.264681817922581 0.282476870449352 0.278386597689063 0.273175877563074 0.273082410438222 0.264536909370253 0.260080680536014 0.282618329189944 0.260070496417905 0.260485935929247 0.259745645804511 0.259745645804511 0.266786724525037 0.265210654503444 0.259745645804511 0.267553508049033 0.266860683787286 0.262584731407754 1 1 - 24002637 24003216 24002931.909 24002388 24005546 - gene protein_coding_gene FALSE TRUE AT1G64610.1|AT1G64610.2 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G42010.1); similar to WD-40 repeat [Medicago truncatula] (GB:ABE94388.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.28737129508086 2.86286956706225 0.0200342754326709 1 3.69548691616175 9.8088558050545 0.28737129508086 0.107442917746095
AT4G31310_at 7.6580798640777 7.69090312693013 7.53895744964481 7.53744235630642 8.18079835871207 7.7766975525191 8.71989099940806 8.44301524026882 6.79953253142708 7.3962682595963 6.7070546997275 7.11121822269943 7.50890037215607 7.22924606391781 6.31287960333487 7.4082143071532 7.72669450204183 7.3370820737498 7.7361221143446 0.20280280028487 0.202332779729139 0.204268877977942 0.208539883547547 0.202500458667373 0.212715998007663 0.211297171166105 0.204021196395678 0.238463500255611 0.202746332660867 0.218247405106407 0.205190406288701 0.210515830798862 0.212091451677853 0.213058617207643 0.204441463926063 0.209914435354212 0.209117645605445 0.208651955252702 4 4 + 15191332 15192319 15191650.4 15191331 15192602 + gene protein_coding_gene FALSE TRUE AT4G31310.1 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24390.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); similar to hypothetical protein CHGG_02445 [Chaetomium globosum CBS 148.51] (GB:XP_001228961.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) -0.256239058117003 -2.86198091725728 0.0200623428038331 1 3.69421253996457 15.1823742180102 -0.256239058117003 0.0849621401752622
AT1G04530_at 9.98819495696096 10.0988742142345 9.90952531502717 9.9957639286619 10.0424275697465 9.81300981246745 10.7292919462948 10.7945195327015 10.6630359985646 10.2956219966225 10.5613402725516 10.7058925292952 10.4155006164559 10.5067761672369 10.2490507847811 10.7558902199766 10.2494933702331 10.4869910928683 10.4204367401717 0.0826364416240896 0.079880370561653 0.0923717266730036 0.0810393240637688 0.0842750203126147 0.089033900685561 0.0806392325361496 0.0801243140905881 0.0823687694097204 0.0831737710034875 0.0795741914879564 0.0788051746901823 0.0796375140606281 0.0864678438389962 0.0795562527099502 0.079533308703503 0.086714332909877 0.0799914550070635 0.080106449912178 1 1|0 -|/ 1234469 1235488 1234978.667 1234175 1236033 - gene protein_coding_gene FALSE TRUE AT1G04530.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT4G17940.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE92034.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.215434934758463 -2.86094681599258 0.0200950551103058 1 3.69272952721866 20.6469834729091 -0.215434934758463 0.0478877439342723
AT4G14890_at 8.62029055482756 9.2425880927765 8.25718732675671 8.33537625283828 8.5598259465014 8.52852423900827 9.0082739320864 9.56039661897766 9.66473210329032 9.2714813277106 9.38352469769924 9.75357927253182 9.30352848770714 9.50312918889255 9.77529490197384 9.61657998893526 8.76602126425767 9.07166378123 9.26138085528705 0.120955625288045 0.126966256883644 0.128226250439216 0.128948741270703 0.126082663974599 0.131097680040427 0.125178665406909 0.122114726953893 0.135164181499146 0.118940064802636 0.124559305273757 0.125643482142194 0.12144728788264 0.123680673309590 0.12680158752915 0.122467375018180 0.128997742872354 0.122904994866220 0.121407194824432 4 4 + 8520898 8521260 8521117.091 8520827 8521448 + gene protein_coding_gene FALSE TRUE AT4G14890.1 ferredoxin family protein similar to ATFD3 (FERREDOXIN 3), electron carrier [Arabidopsis thaliana] (TAIR:AT2G27510.1); similar to 2Fe-2S ferredoxin, iron-sulfur binding site [Medicago truncatula] (GB:ABE82976.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.345095877958373 -2.86091677103383 0.0200960063595844 1 3.69268643869598 18.1619895171380 -0.345095877958373 0.144703813964795
AT1G45145_at 10.8931113283158 10.8031818051564 11.001824952672 11.1554083965374 10.0172178603158 9.6326842198955 8.05819503980244 8.06790685716381 7.70598321689767 8.14094555875764 7.02443372722694 7.15405350097699 7.83910828753742 7.54903250359027 7.22758179186394 7.80938599190565 7.92586134474479 6.75194846972216 7.92183259008043 0.178369285002785 0.180977230052332 0.174891907300693 0.178421846161418 0.175733866699299 0.169286329731961 0.169565810614514 0.176855603059545 0.175031870075164 0.166768943529020 0.17579659876732 0.174485709570925 0.171916608132491 0.171077067358802 0.169292928498667 0.166891127344314 0.169145795229297 0.184345797488323 0.167494183330112 1 1 - 17077713 17078659 17078059.727 17077382 17078761 - gene protein_coding_gene FALSE TRUE AT1G45145.1 ATTRX5 (thioredoxin H-type 5); thiol-disulfide exchange intermediate encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. Identical to Thioredoxin H-type 5 (TRX-H-5) (TRX5) [Arabidopsis Thaliana] (GB:Q39241;GB:Q38881;GB:Q9MAJ6); similar to ATTRX3 (thioredoxin H-type 3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G42980.1); similar to thioredoxin h (GB:AAC49356.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.241720173348172 2.86059004429349 0.0201063538023108 1 3.69221786553533 17.6202393862030 0.241720173348172 0.0733465266984508
AT4G03520_at 11.7264232415704 11.7953553012104 11.6526001999636 11.7531968879218 11.7962473926820 11.812621422727 11.6461943516122 11.8445949301220 11.2125579591556 11.5689996396463 11.9183607169494 11.7049912067141 11.7863294408496 11.6904416757398 11.7663378795228 11.9244478493543 11.9652089379156 11.8745323425005 11.4517827874891 0.0949314339410353 0.0947023441077396 0.0990305945472808 0.094494943810788 0.0955763448578932 0.097003565279159 0.0928369613029565 0.0991168771468961 0.103134996946226 0.102053208941003 0.098331313416806 0.0926082325194386 0.0941138754844098 0.10177339130025 0.096707405801271 0.095309387132364 0.0998216461246008 0.0984536973427395 0.100221816152171 4 4 - 1562587 1563981 1563254.909 1562357 1564190 - gene protein_coding_gene FALSE TRUE AT4G03520.1 ATHM2 (Arabidopsis thioredoxin M-type 2); thiol-disulfide exchange intermediate chloroplast localized thioredoxin, similar to prokaryotic types. Identical to Thioredoxin M-type 2, chloroplast precursor (TRX-M2) [Arabidopsis Thaliana] (GB:Q9SEU8;GB:Q9ZT79); similar to ATHM1 (Arabidopsis thioredoxin M-type 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G03680.1); similar to Thioredoxin M-type, chloroplast precursor (TRX-M) (GB:Q9XGS0); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) 0.209121156895589 2.85755228413559 0.0202028226036831 1 3.68786102255601 23.3733765751213 0.209121156895589 0.0404008411952175
AT1G06950_at 8.7308201595793 8.55373336071691 8.32869887421543 8.39826188151153 8.43777832547971 8.0617992601811 8.39113549231827 8.2814291934612 7.4968399567583 7.55367441461058 7.21378282633022 7.92709283144708 7.26357485063855 6.53715967007967 8.35077473936407 7.33287767197358 7.1463560432463 7.05360781901903 7.92374347275567 0.218820234434963 0.215008419563382 0.216410730885069 0.212739904596693 0.217967110973579 0.21157492686406 0.213900381903383 0.212765903019474 0.221482228706354 0.225401917527968 0.217984437398407 0.208617406961011 0.209905089604663 0.235414601515437 0.214858865520313 0.215194360297692 0.212336193379741 0.224449217097307 0.213679976885098 1 1 - 2130362 2130943 2130652.636 2130141 2135664 - gene protein_coding_gene FALSE TRUE AT1G06950.1 ATTIC110/TIC110 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 110) Encodes a protein thought to be a part of the translocon at the chloroplast inner envelope. Involved in protein import into the chloroplast and chloroplast biogenesis. similar to Helix-hairpin-helix motif [Medicago truncatula] (GB:ABE84639.1); similar to IAP100 (GB:AAC49399.1); similar to chloroplast inner envelope protein, 110 kD (IEP110) [Pisum sativum] (GB:CAA92823.1) -0.243788803850590 -2.85679693906547 0.0202268836167239 1 3.68677761304964 15.9035766957098 -0.243788803850590 0.0753522366206162
AT1G31335_at 4.49265856858094 4.65163479691275 4.49523464158372 4.37294615533147 4.85600502118691 5.28202088982138 6.17856895458858 6.40013264067332 5.58852762674061 5.15950362329446 5.63384409973756 5.57901628277201 5.26173478460725 5.1874908388798 5.7220837132113 5.02544754042748 5.48059539069897 5.33162760931777 4.99714986978258 0.198807520392214 0.207951746083188 0.205770419832681 0.206276839412463 0.199241818199354 0.200353959341215 0.196403832971063 0.214467254594743 0.199967864349210 0.201802683816107 0.200773747526483 0.197516052372147 0.203617301985004 0.198808913048139 0.196973982136904 0.196403832971063 0.202529365719056 0.207289244898290 0.199942963875884 1 1 - 11217172 11217285 11217205.727 11216895 11217374 - gene protein_coding_gene FALSE TRUE AT1G31335.1 similar to Os03g0780200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051448.1) -0.262430368678696 -2.85645798852174 0.0202376902424977 1 3.68629143891859 10.4167120781161 -0.262430368678696 0.0900562740328586
AT3G11690_at 3.55417831952128 4.75804242862162 5.72377156367285 6.40230682752465 7.93452862170295 7.0709981593045 7.73827533034524 7.94733218722382 7.21393569383937 6.96691702736582 8.17455514661356 6.86994398097491 8.32245715578957 8.27105143305252 5.84173014325128 7.92404303278124 7.99969936666758 7.53295857864895 7.46635016924563 0.250453385787193 0.248028343251253 0.257417964394904 0.238217738364028 0.227215449279056 0.248591220073631 0.237085105347033 0.228919275051765 0.238732849111166 0.233375202915848 0.227215449279056 0.232475921606441 0.227878360665213 0.245075306497511 0.251415909822936 0.230206106791800 0.244440896882330 0.228453984608285 0.229718873939642 3 3 + 3695730 3696215 3695937.182 3694994 3696484 + gene protein_coding_gene FALSE TRUE AT3G11690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G06380.1); similar to pollen preferential protein [Lilium lon (GB:CAA78966.1); contains domain Thiolase-like (SSF53901) 0.592382392264379 2.85429433920385 0.0203068131504805 1 3.68318787128789 13.8075737555093 0.592382392264379 0.284309827940642
AT1G21980_at 5.72026630470033 4.75089699739803 4.79067853567601 4.23535879742157 5.63129193428063 4.74704245550063 7.12302297319489 5.84645988628646 7.71741325398765 7.22309008502877 7.93757297222626 7.75173218834883 7.23389862519764 6.83764218190245 7.77873776784794 6.90117125721169 6.7483297044154 6.64988303098395 7.8016853606428 0.253526932090148 0.255635498192275 0.264386325507259 0.271909626238328 0.260763301038239 0.276219159597886 0.254256103375678 0.265278955447046 0.267150790744914 0.250395916581331 0.253202238010412 0.250395916581331 0.253683558137432 0.25612267253517 0.268397589447073 0.254280424275886 0.259164377451229 0.254265039397760 0.250395916581331 1 1 + 7737257 7738261 7737865 7734728 7738650 + gene protein_coding_gene FALSE TRUE AT1G21980.1 ATPIP5K1 (Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase 1); 1-phosphatidylinositol-4-phosphate 5-kinase Type I phosphatidylinositol-4-phosphate 5-kinase. Preferentially phosphorylates PtdIns4P. Induced by water stress and abscisic acid in Arabidopsis thaliana. Expressed in procambial cells of leaves, flowers and roots. Identical to Phosphatidylinositol-4-phosphate 5-kinase 1 (EC 2.7.1.68) (AtPIP5K1) (1-phosphatidylinositol-4-phosphate kinase 1) (PtdIns(4)P-5-kinase 1) (Diphosphoinositide kinase 1) (PIP5K1) [Arabidopsis Thaliana] (GB:Q56YP2;GB:O22503;GB:O82120;GB:Q9LM65); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT1G77740.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT2G26420.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); similar to putative phosphatidylinositol-4-phosphate-5-kinase [Zea mays] (GB:AAL76002.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABE83677.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.679963605105759 -2.85377526444367 0.0203234323223297 1 3.68244326901405 12.7609275018422 -0.679963605105759 0.33105349593652
AT1G19430_at 6.62618384528757 6.33415660782505 6.30916734671537 6.55760731112273 6.65694732146969 7.09744158039196 6.40271720523115 6.1425459561999 6.15885359159759 6.6783485640569 7.01819961652507 6.79808768517345 7.12321568417756 6.65341447572057 6.83657081071369 6.71133853812312 7.06529011147153 6.55731918720825 6.7890612661757 0.151042585957221 0.157276784569074 0.156145372096762 0.157796627199288 0.151226930767788 0.153910945698443 0.150909155198979 0.150850161510089 0.160180193721686 0.157032811646624 0.160013455460477 0.156255309603585 0.16352714667381 0.154836743297293 0.159008261630198 0.164414503517204 0.155178836325956 0.162336244854334 0.156983850439659 1 1|0 -|/ 6724781 6725369 6725060.75 6724564 6728031 - gene protein_coding_gene FALSE TRUE AT1G19430.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to Os01g0883900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045015.1); similar to Os03g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051428.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.291115846325722 2.85358251412493 0.0203296071548463 1 3.6821667691862 13.2096045572384 0.291115846325722 0.110636838284395
AT1G05140_at 9.54681999005125 9.79398493749745 9.73659844861175 9.79777749580016 9.9521275570749 9.70455667335114 10.4896078053255 10.3665288851169 10.0818558597422 10.4478137156128 10.1182045295733 10.1369756278427 10.0004849502612 9.98622849895598 9.78011095738901 10.1255243481619 10.0059910615185 9.71124289128104 10.0547414903588 0.104364541807010 0.103463714493253 0.103021984686483 0.106446219267394 0.105161229564598 0.110182059150545 0.106008971627214 0.114300728666629 0.123299084891475 0.102821787066474 0.108420169845127 0.105199552417737 0.106883836893393 0.105959067079136 0.106370529575648 0.102821787066474 0.110448268235295 0.119265213074930 0.111902285566454 1 1 + 1483438 1483936 1483720.182 1482547 1484055 + gene protein_coding_gene FALSE TRUE AT1G05140.1 membrane-associated zinc metalloprotease, putative similar to membrane-associated zinc metalloprotease, putative [Arabidopsis thaliana] (TAIR:AT2G32480.1); similar to hypothetical protein slr1821 [Synechocystis sp. PCC 6803] (GB:NP_441081.1); similar to Os03g0579000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050547.1); contains InterPro domain Peptidase M50, putative membrane-associated zinc metallopeptidase; (InterPro:IPR004387); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase M50; (InterPro:IPR008915) -0.231589345618333 -2.8521513152151 0.0203755165883445 1 3.68011366094408 20.0124497474508 -0.231589345618333 0.0650448808691663
AT1G02020_at 5.37182683169832 5.15411706413926 5.07570072849886 5.03395339755441 5.08446961745691 5.1021494894046 4.98090535901129 5.20796139021886 5.75316834733055 5.23714496489216 5.17747712263521 4.84087675958399 4.89268337174547 5.41842534839721 5.23680771133878 5.52788539599237 5.29993012440673 5.20405671779671 5.62256372171718 0.168884273999982 0.172020068707023 0.176411552993136 0.170042811901829 0.173028312762612 0.175782750805071 0.166142739787363 0.170044336089010 0.176851452975736 0.173910865387265 0.172664000833785 0.17210424643007 0.178398708243225 0.172796373722321 0.171363415661981 0.165038175378576 0.175055123008474 0.171919157511983 0.179350900997177 1 1 - 352873 353478 353135.455 352637 354969 - gene protein_coding_gene FALSE TRUE AT1G02020.1|AT1G02020.2 nitroreductase family protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93466.1); contains domain no description (G3D.3.40.109.10); contains domain NADH oxidase/flavin reductase (SSF55469) -0.221246106015570 -2.85179675504114 0.0203869065045560 1 3.67960501561552 10.4950822332313 -0.221246106015570 0.0549996477186016
AT4G39710_at 8.64233533909069 8.70211096643721 7.9112765188654 7.99891957674248 8.93040362009256 8.12253974318087 9.39160629216833 9.1413667592303 8.69424892191691 8.82391845598578 8.39506978518492 9.01380455437159 8.37405553729953 8.67247556370426 9.04913465926955 9.29408179777514 8.75374062648867 8.63741342317717 8.70858259364246 0.143865315995705 0.145466469149276 0.153158591909002 0.152289649606749 0.148041306796690 0.165881707201018 0.146509143352118 0.149449460498374 0.164380043014512 0.146527089456573 0.149445471602065 0.148667822843218 0.150825243285288 0.142832289913658 0.149235960610922 0.143459775582256 0.149206752916750 0.151493688237117 0.145923366246020 4 4|0 -|/ 18427301 18428185 18427896.889 18427033 18428353 - gene protein_coding_gene FALSE TRUE AT4G39710.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 4, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) (FKBP23I) [Arabidopsis Thaliana] (GB:Q9SCY3;GB:O65658;GB:Q941D9); similar to FK506-binding protein 1 (FKBP13) [Arabidopsis thaliana] (TAIR:AT5G45680.1); similar to Os06g0663800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058294.1); similar to Os02g0751600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048136.1); similar to Chain A, Crystal Structure Of Atfkbp13 (GB:1U79); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.348548985808748 -2.85159865135418 0.0203932732533322 1 3.67932081712994 17.3630558439379 -0.348548985808748 0.147504947258570
AT1G23730_at 4.31177214276162 3.92155556095774 5.8797308240853 5.69582551285282 5.26121377113767 5.44695711442425 5.29270967083231 5.22087150116314 5.77055837737113 5.38998399075858 5.65062693642766 4.42156117937412 5.21949680683673 5.01649729870322 4.52703842148842 5.15884853614755 5.89542478603893 5.53372717653273 5.51538085419553 0.222967568032441 0.210548978959238 0.227563797319163 0.220512476313640 0.218596177346833 0.214982455487238 0.209643503842588 0.209555896744147 0.219070759736054 0.207110238753821 0.207110238753821 0.213568996185100 0.207110238753821 0.213344067877513 0.215639753172700 0.208172755471512 0.216241175096326 0.207201069818017 0.207110238753821 1 1|0 +|/ 8396959 8397963 8397512.875 8395546 8398133 + gene protein_coding_gene FALSE TRUE AT1G23730.1 carbonic anhydrase, putative / carbonate dehydratase, putative similar to carbonic anhydrase, putative / carbonate dehydratase, putative [Arabidopsis thaliana] (TAIR:AT1G70410.2); similar to carbonic anhydrase [Solanum lycopersicum] (GB:CAH60890.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) 0.25173307764078 2.85068482405779 0.0204226687502859 1 3.67800982059103 10.4971013706779 0.25173307764078 0.0822239977377215
AT1G71020_at 6.37686714584477 7.2033578259084 5.17104523581044 5.232741180226 6.7687792172532 7.0083729315053 6.67466987621112 6.8606091370489 7.4157826842408 6.3041546816743 7.82406196973864 7.87511420497828 6.83929965780363 7.21926717702525 7.04247123891548 6.64947447665342 5.8753218677243 6.98449437948766 7.33732235039494 0.277822029007600 0.252126767690610 0.302365097325864 0.265951355304737 0.255590612211893 0.283891935948912 0.269508455421202 0.259992397033846 0.262868622299620 0.256597593508971 0.256298327308795 0.252126767690610 0.265154968877414 0.252126767690610 0.258748237179837 0.262004860893783 0.273691215538261 0.270430925532578 0.262597079989440 1 1 - 26794506 26795058 26794824.091 26794259 26796837 - gene protein_coding_gene FALSE TRUE AT1G71020.1 armadillo/beta-catenin repeat family protein / U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G23030.1); similar to Os03g0275900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049711.1); similar to Os02g0732200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048024.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD67947.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.357019902808541 -2.85053816319357 0.0204273905140584 1 3.6777994139309 13.4409426655481 -0.357019902808541 0.152727166782789
AT3G04240_at 9.2086527962075 9.04583880050509 9.73903004126239 9.6658152845558 9.56175415778629 9.29203430456072 9.41947744422075 9.41768564678359 8.56329624875462 8.84395419949423 8.7311236491159 8.98596470168052 8.6602610011821 8.90601202675271 8.88989235251015 8.82421637413663 8.91134827671306 8.8196277060545 8.65949358645045 0.107159881802667 0.103477424294919 0.105213172283445 0.104295708108948 0.104479321492136 0.103951951159061 0.104054888092802 0.111753663918217 0.111359289529937 0.107824366068022 0.108997618871706 0.103997135026531 0.106897660361251 0.103477424294919 0.108857062787063 0.103477424294919 0.106361519311153 0.108864955762415 0.105286344669352 3 3|0 -|/ 1114201 1115103 1114611.8 1113941 1120879 - gene protein_coding_gene FALSE TRUE AT3G04240.1 SEC (SECRET AGENT); transferase, transferring glycosyl groups Has O-linked N-acetyl glucosamine transferase activity. Similar to Arabidopsis SPY gene. Identical to Probable UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase SEC (EC 2.4.1.-) (Protein SECRET AGENT) (SEC) [Arabidopsis Thaliana] (GB:Q9M8Y0); similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [Canis familiaris] (GB:XP_858769.1); similar to PREDICTED: similar to O-linked N-acetylglucosamine transferase isoform 9 [Canis familiaris] (GB:XP_858842.1); similar to putative O-linked N-acetyl glucosamine transferase [Oryza sativa (japonica cultivar-group)] (GB:BAD21873.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.221942928948583 2.84860931832689 0.0204895945017718 1 3.67503210404987 18.1837712791109 0.221942928948583 0.0559747731246352
AT3G05900_at 6.44431942141451 6.85389861882654 6.30958807714677 6.38525923177072 7.46091591118026 6.86815452161571 7.89990135514332 7.65044978341688 9.0563356099319 8.37076923956652 9.4109895394802 8.47368897848312 8.75603243259271 8.31689484414684 8.61589354525048 8.4666047037059 7.71568541080921 8.75982587283025 8.84268167798393 0.177270196890507 0.181886847290084 0.175527723883488 0.177948373584254 0.173142133206583 0.187472099718874 0.177783163774065 0.172663635309545 0.179965273436814 0.170729919283488 0.170916288016668 0.171958215953773 0.171280945794494 0.174771149353736 0.177915512327208 0.169756737802489 0.172552381095353 0.169699122922881 0.172079561449761 3 3 - 1761448 1761973 1761782.636 1761211 1763990 - gene protein_coding_gene FALSE TRUE AT3G05900.1 neurofilament protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to unnamed protein product [Asper (GB:BAE61223.1) -0.324153226260195 -2.84836085519779 0.0204976214281125 1 3.67467562140329 15.6445845776009 -0.324153226260195 0.132595720467978
AT3G11110_at 4.77233688181042 4.97620680422664 5.16604589051445 5.18822553663978 5.26255610548152 5.20186192590314 6.42149623782267 6.7562485964429 6.5268977960137 6.433755082935 6.68909071001122 6.34469853074773 6.88359846746359 7.08654739137727 6.01715187535551 6.28455766782723 6.4730715552876 6.22813198903283 6.37332414663727 0.235251283496156 0.220919123832654 0.224050246025608 0.226421032591426 0.214574949780941 0.216224443102442 0.218927783553481 0.220759914267267 0.223885454540642 0.218260157034321 0.219891675799921 0.232513283293322 0.21492577250469 0.219511906687938 0.230621718260206 0.215312309684100 0.214574949780941 0.220133721820644 0.219143054027915 3 3 + 3480012 3480401 3480226.909 3479985 3480461 + gene protein_coding_gene FALSE TRUE AT3G11110.1 zinc finger (C3HC4-type RING finger) family protein Identical to Probable RING-H2 finger protein ATL3D (ATL3D) [Arabidopsis Thaliana] (GB:Q9SRM0); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G43420.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE91399.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.235351375290858 -2.84802707251037 0.0205084098054841 1 3.67419672177436 11.9408797633135 -0.235351375290858 0.0687438402648616
AT2G15050_at 9.88737874856065 9.88368609644653 10.1902723853911 10.0813978405657 10.5723817691108 10.5832125444212 10.8272108199227 10.9837195590826 10.3484618278836 10.9519716102460 11.3633236597921 11.2195273007696 11.5815761012067 11.3994156721704 10.7584867482159 11.0642506628688 11.0017563824562 11.0415258739010 10.8997159149424 0.0836933518209765 0.084387934903796 0.0860081220611304 0.0856558375441478 0.0859516177418401 0.0829295186367858 0.082071405784311 0.0816907750011355 0.0876527904053706 0.0820287562073568 0.0803053412020177 0.0813509082009296 0.0799939779076144 0.0799939779076144 0.086039608581263 0.080028725186431 0.082825287342691 0.0814178656474754 0.0814542572125973 2 2 + 6525998 6526307 6526133 6525922 6527242 + gene protein_coding_gene FALSE TRUE AT2G15050.1|AT2G15050.2 LTP; lipid binding similar to LP1 (nonspecific lipid transfer protein 1) [Arabidopsis thaliana] (TAIR:AT2G38540.1); similar to Nonspecific lipid-transfer protein A precursor (LTP A) (Wax-associated protein 9A) (GB:Q42641); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.203333505675533 2.84764310919342 0.0205208273223054 1 3.67364581811021 21.3322154293693 0.203333505675533 0.033052803522781
AT3G23600_at 11.0836731748571 11.1541985099117 11.3758272208288 11.5462401926092 11.1839366982489 11.0092148525965 11.0036412347662 10.9613760565072 10.4392620598580 10.7450100644191 10.7130037367757 10.6301138194278 10.8165538917630 10.7080595628295 10.6701016130140 10.6749455268872 10.7945882021772 10.8668806899935 10.4331280303158 0.0849152474984585 0.0839779646597156 0.0870666684517356 0.0839779646597156 0.0857297583965716 0.0891058335102196 0.086035050761396 0.0864813015069874 0.0930859920904027 0.0839779646597156 0.0860507946158336 0.0839779646597156 0.0849575279250375 0.0938635615358458 0.0885457521746627 0.084391810640232 0.0877905065415908 0.088277899375685 0.0857848678306863 3 0|3 /|+ 8474533 8475396 8474953.111 8473782 8475895 + gene protein_coding_gene FALSE TRUE AT3G23600.1|AT3G23600.2 dienelactone hydrolase family protein|hydrolase similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23570.1); similar to 'putative endo-1,3;1,4-beta-D-glucanase' [Oryza sativa (japonica cultivar-group)] (GB:AAU10802.1); similar to Os05g0399100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055474.1); contains InterPro domain Dienelactone hydrolase; (InterPro:IPR002925) 0.211614996277245 2.84714336374932 0.0205370008590225 1 3.67292878171240 21.8014706251521 0.211614996277245 0.0445690426907583
AT4G30310_at 9.23289082167475 9.10573598236371 8.93437106111019 8.66968518216069 9.2740880757883 8.68188914323992 9.28170887427265 8.98601646046402 9.26490357899143 9.2440884375732 9.00944283493235 8.82376412405877 8.48787308751168 8.79733915769568 9.05140259544383 9.0747481730796 8.81703811861522 8.82657452484578 9.1633902322477 0.115261611299531 0.115669068737525 0.122960325708355 0.113708182228219 0.120590624368117 0.118821167596711 0.114667268118120 0.115533748998009 0.129915578205419 0.114277615332819 0.114921694254280 0.117818442742247 0.117762287880729 0.121322710475649 0.115807856720594 0.112234910589944 0.125548534312995 0.122583723057225 0.115092572649370 4 4|0 +|/ 14834184 14835051 14834579.3 14831867 14835220 + gene protein_coding_gene FALSE TRUE AT4G30310.1|AT4G30310.2|AT4G30310.3 ribitol kinase, putative similar to putative ribulokinase [Oryza sativa (japonica cultivar-group)] (GB:BAD27990.1); contains InterPro domain Pentulose kinase; (InterPro:IPR006003); contains InterPro domain Carbohydrate kinase, FGGY; (InterPro:IPR000577) -0.31234212918346 -2.84455657042616 0.0206209284708721 1 3.66921705111276 18.0633733217811 -0.31234212918346 0.125313630399779
AT1G67880_at 5.62519165179459 6.79141159384449 6.11018098925338 6.47222972429423 6.13960535623867 5.81458361968336 7.32702175099752 7.29827255554985 5.58466802412819 6.04984642685212 5.73017762102801 5.53165828478489 6.19475261579389 5.70796667998909 4.93884424700604 5.69635684474349 6.00935355308154 5.45384607959078 6.28260332560216 0.216796647345036 0.216326733481442 0.215368659218641 0.212978976779247 0.212716058724066 0.222599727051575 0.215136135271505 0.221606191094680 0.220918232798144 0.211490743814131 0.21243787808344 0.227037556819964 0.230987728907252 0.217939518289144 0.222948156296769 0.212973959322606 0.222831108527228 0.218296049706597 0.218220809949417 1 1 - 25457770 25458303 25458048.727 25457584 25459398 - gene protein_coding_gene FALSE TRUE AT1G67880.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G12990.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); similar to beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula] (GB:CAI70376.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313) -0.470413783560572 -2.8437562845615 0.0206469648427431 1 3.6680686746962 12.2624331966802 -0.470413783560572 0.218735473805766
AT4G20150_at 11.1921610097043 11.2701964453187 11.2966608835768 11.3844069228261 11.0812850904201 11.2362117881535 11.0146295285906 11.2146096748648 11.0497810155195 10.8966033663703 11.101314270912 11.2998129611166 11.1150056805526 11.3135122332195 11.4034030020715 11.2334560182657 11.2902328535811 11.3378966569983 10.7825407384578 0.0669077664609206 0.0640427447699327 0.068114051757402 0.0672466540824034 0.0659817958442558 0.0680243403714163 0.0657949213615005 0.0661838692000184 0.0695064466854783 0.066163433684571 0.0665523903546897 0.0640427447699327 0.0640427447699327 0.0661130430052447 0.0648500251911696 0.0640427447699327 0.068016195599623 0.064338663454322 0.0663288303812000 4 4|0 -|/ 10889164 10889474 10889297.111 10888278 10889607 - gene protein_coding_gene FALSE TRUE AT4G20150.1 similar to unknown protein [Phytophthora infestans] (GB:AAY43427.1); similar to Os07g0498300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059709.1) 0.214464754715825 2.84374215548816 0.0206474248192958 1 3.66804839980004 22.2970056261180 0.214464754715825 0.048264333678461
AT1G15710_at 4.35507796212696 5.42290881796048 4.51931068697292 4.34229339017008 4.20091755152125 4.40459283005104 6.17584204534217 6.36747239453923 4.01496518905914 5.03228390866413 4.78258858340205 5.41112575190746 4.93403456981292 5.03599216998191 5.29750018152176 4.85483662408627 4.12991634257604 4.90434504105219 4.62140750992895 0.237407262589836 0.236855926912895 0.234962354150088 0.231887793390582 0.234813059044507 0.236855932142670 0.249494521084489 0.240609127618359 0.238487433505699 0.234748477085816 0.233112141337344 0.244659831276745 0.233038343159069 0.248252856137385 0.231887793390582 0.231887793390582 0.243156848138933 0.232129743030922 0.239960148044799 1 1 + 5404996 5405463 5405201.636 5404353 5405681 + gene protein_coding_gene FALSE TRUE AT1G15710.1 prephenate dehydrogenase family protein Identical to Arogenate dehydrogenase 2, chloroplast precursor (EC 1.3.1.78) (TyrAAT2) (TYRAAT2) [Arabidopsis Thaliana] (GB:Q9LMR3;GB:Q8L7Z4); similar to arogenate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G34930.1); similar to Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent [Medicago truncatula] (GB:ABE87267.1); contains InterPro domain NADP oxidoreductase, coenzyme F420-dependent; (InterPro:IPR004455); contains InterPro domain Arogenate/prephenate dehydrogenase, plant; (InterPro:IPR012070) -0.42548657574411 -2.84269875027191 0.0206814223509465 1 3.66655111117165 9.7110575984655 -0.42548657574411 0.193465800994684
AT3G51250_at 7.34231990677766 7.94872687524704 8.31588750474243 8.38161594179588 8.41462296506821 8.08557448427724 8.22852772412843 8.07961530584425 7.38853855754365 7.55078032740707 7.75381206491726 7.42818495027981 7.86495725059126 7.75838468271357 6.8916854154601 8.07968547429335 7.73874802936322 7.54765182487854 7.30996008507658 0.185990920765363 0.183968705013083 0.193292304811784 0.184137074822896 0.189904100850438 0.188461133386705 0.198676101830446 0.185968741533579 0.202032644404898 0.18452397459347 0.185030731184572 0.181867089072200 0.190856956819457 0.194093426526820 0.19185983086603 0.179533304517742 0.195814114482571 0.184220705236021 0.181922977924618 3 3 + 19040006 19041373 19040709.727 19039182 19041655 + gene protein_coding_gene FALSE TRUE AT3G51250.1 senescence/dehydration-associated protein-related similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) 0.308045079595652 2.84241894801881 0.0206905490008473 1 3.66614958563055 15.6242688559374 0.308045079595652 0.122673353887847
AT3G17390_at 10.6850210481234 10.8549519906055 10.2836580126402 10.2296739245871 10.5137503921439 10.4523510911579 11.4280732864788 11.6124022581400 11.5222219898621 11.5521464656887 12.2034894111493 12.0901174068823 11.6246057963247 11.8004431285837 11.9891478296267 11.6606064878431 10.9845888443457 11.8348307405368 11.1913662664901 0.081174939440528 0.0804711178493145 0.0857400392050452 0.0896843481802687 0.0852941094393353 0.0817724377411975 0.0868297311211922 0.0850012361310476 0.0882629204631512 0.0819850078655934 0.0839438595425124 0.0824146384859944 0.0829602063823664 0.088898956836054 0.0846203850440582 0.0798561646274614 0.086526814168268 0.0798561646274614 0.0829936050039713 3 3 - 5952496 5952941 5952711.909 5952193 5954088 - gene protein_coding_gene FALSE TRUE AT3G17390.1 MTO3 (S-adenosylmethionine synthase 3); methionine adenosyltransferase S-adenosylmethionine synthetase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MAT2/SAM-2 (S-adenosylmethionine synthetase 2) [Arabidopsis thaliana] (TAIR:AT4G01850.2); similar to MAT3 (METHIONINE ADENOSYLTRANSFERASE 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT2G36880.1); similar to S-adenosylmethionine synthetase 2 (Methionine adenosyltransferase 2) (AdoMet synthetase 2) (GB:Q96552); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAG17666.1); similar to S-adenosylmethionine synthetase [Litchi chinensis] (GB:AAP13994.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) -0.211843329528368 -2.83848020712635 0.0208194640129259 1 3.66049697236276 22.3551803903222 -0.211843329528368 0.0456345676528344
AT1G21760_at 8.98948895624438 9.45709419695688 9.63317690225758 9.639944234802 9.86389596070762 9.85792425852386 9.4168607773262 9.6298443516221 9.01616349044753 8.96523687078732 9.24844121159253 8.97512093730714 9.41544227850923 9.33493757245398 8.76838957777826 9.37200981975088 8.97443708239317 9.12268705204129 9.04487743556434 0.0871809711865573 0.0812652563968365 0.0836340775236313 0.0849165984483868 0.0852709865802972 0.0834261008787771 0.0877895632123007 0.082913135706479 0.0848692760235271 0.084592211327204 0.0819234685015917 0.0838048106903845 0.0872704340620846 0.0883281847498519 0.0855991786704448 0.0836781629193784 0.09063535992506 0.085550012466161 0.0858156197427892 1 1|0 +|/ 7650274 7651552 7651041.778 7649183 7651805 + gene protein_coding_gene FALSE TRUE AT1G21760.1 F-box family protein similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE79796.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.259043597206974 2.83571517661568 0.0209104565342406 1 3.65652835871384 18.6411249333441 0.259043597206974 0.0889336187941687
AT2G46060_at 5.80963878595662 5.5280358321445 5.10917152245176 5.37785522172748 5.53820038218225 5.0970981986888 5.8294308948144 5.94279926540148 5.57574553868756 4.91686319196988 4.86820657095972 4.83121040183115 5.36723040831272 5.47185303928547 5.25110843836859 4.96587801400591 4.8628776899166 4.99913519345306 4.92338651751966 0.180255296731452 0.181894877051953 0.190971131944602 0.194981106133446 0.185238597851656 0.205810161323797 0.182617916120990 0.181218993056110 0.181898633807019 0.190429641682103 0.185976468097716 0.180255296731452 0.190090520144733 0.186662024850271 0.191487860557549 0.185863727101864 0.187987787410206 0.182562416437280 0.192510099597995 2 2|0 -|/ 18948480 18949399 18949061.2 18948172 18952172 - gene protein_coding_gene FALSE TRUE AT2G46060.1|AT2G46060.2 transmembrane protein-related similar to Os10g0446200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064715.1); similar to transmembrane protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47721.2) -0.279186238262860 -2.83511907104650 0.0209301268744324 1 3.65567272988871 10.6369550390421 -0.279186238262860 0.103676163387457
AT2G01850_at 10.5333517952437 10.4840701901916 11.0847641189141 11.1769284077548 11.3768131744561 11.3171506851946 11.5847027114414 11.6507713963163 11.8477879053464 11.8806836793060 11.8145931272125 10.9858158327255 11.6523713316905 11.5478078559629 10.5154521996129 11.1768928255003 11.3096542892367 11.2856850173795 11.8409072789176 0.0735743031806801 0.0717305098196667 0.0730068909003732 0.0771277487690512 0.0740410661471966 0.0749211595230927 0.0731184480944013 0.0724714735392331 0.0801268642383222 0.0732771325817738 0.0741586784133152 0.0717305098196667 0.07277537866409 0.077643700125173 0.0756337407442713 0.0717305098196667 0.0782386710124982 0.074182392891473 0.0732554971961332 2 2 + 386032 387074 386813.273 385198 387343 + gene protein_coding_gene FALSE TRUE AT2G01850.1 EXGT-A3 (endo-xyloglucan transferase A3); hydrolase, acting on glycosyl bonds EXGT-A3 has homology to xyloglucan endotransglucosylases/hydrolases (XTHs). Mutants in this gene show a lesion mimic phenotype associated with leaf maturation and a reduction in the number of tertiary veins. Individual tracheary elements in the mutants are shorter, but phloem transport activity is not severely affected. EXGT-A3 plays a role in xyloglucan degradation in the differentiating tracheary elements of rosette leaves. Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 27 precursor (EC 2.4.1.207) (At-XTH27) (XTH-27) (XTH27) [Arabidopsis Thaliana] (GB:Q8LDS2;GB:O04906;GB:Q9SEB1); similar to XTR2 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE RELATED 2), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT1G14720.1); similar to ETAG-A3 [Solanum lycopersicum] (GB:BAA88668.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.197367743996619 -2.83488896193445 0.0209377251205169 1 3.65534243507824 22.7223159004917 -0.197367743996619 0.0237580901528101
AT4G13140_at 7.31501612740197 7.38542527409158 7.30406538351453 7.20911137292967 7.7419639899256 7.01251532792322 7.98102798695371 7.45797218864215 7.30529279517858 7.41976452854836 7.0336867341806 7.08480000434409 6.74663509230399 6.6608872728068 6.77094630898526 6.88717094249991 7.0388916039125 7.38403124693371 7.64250901428788 0.172806378520041 0.171601814763402 0.173225148312642 0.179189214792136 0.171260041097552 0.178418553844194 0.175357684352801 0.175348106530489 0.187593455995141 0.175416644571229 0.171482576967135 0.167839690813354 0.167650221180881 0.194322271247072 0.179228114557429 0.171123899860089 0.191851441157684 0.181050405964729 0.168943083849248 4 4|0 -|/ 7650323 7650946 7650637.222 7650322 7651141 - gene protein_coding_gene FALSE TRUE AT4G13140.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE88839.1) -0.361460335479086 -2.83392753066847 0.0209695024421632 1 3.6539623864733 14.6292555047982 -0.361460335479086 0.156674830404071
AT1G08720_at 6.33822482944753 6.38128700841082 6.77206269509793 6.82349986185081 7.20441615056716 6.65141705301216 5.87493885873284 5.4666813763035 5.49570708513236 5.62600812390372 4.96878764388121 5.34720222653596 5.4201267181972 4.8341672111061 5.11470611768754 5.97374081102594 5.12462615257666 5.7073516593781 5.54144719295698 0.218448191849481 0.215674580181625 0.228340635320827 0.22326277120098 0.218174313313661 0.234755166788368 0.217151827792635 0.218343757309600 0.229942343739539 0.221536386188034 0.221584355697473 0.215857910079677 0.215674580181625 0.220213841670196 0.216096742783971 0.215674580181625 0.230190141118081 0.217476935863026 0.227029067499429 1 1|0 +|/ 2777881 2778831 2778255.556 2774033 2779300 + gene protein_coding_gene FALSE TRUE AT1G08720.1 EDR1 (ENHANCED DISEASE RESISTANCE 1); kinase/ protein threonine/tyrosine kinase enhanced disease resistance 1 (EDR1) confers resistance to powdery mildew disease caused by the fungus Erysiphe cichoracearum similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G11850.1); similar to TCTR2 protein [Solanum lycopersicum] (GB:CAC67797.1); similar to TCTR2 protein [Solanum lycopersicum] (GB:CAA06334.1); similar to enhanced disease resistance 1 [Delphinium 'Ma (GB:BAD02482.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.302258511062955 2.83326230655575 0.0209915185047826 1 3.65300749217999 11.8719289966176 0.302258511062955 0.119518309846662
AT3G12620_at 7.23733869658628 7.54376176644968 7.41081846520897 6.75114723960362 7.9977423432488 7.42266705213969 7.25994210061055 7.10733858677084 6.85069417831167 7.05149795006276 7.96731127842017 7.64218007908952 7.39510268358724 7.4664877308752 7.70136372463144 7.49237224858895 6.72126600114569 7.41946243384114 6.62280786447265 0.213036390278276 0.204362864481358 0.211367871352466 0.207827287575551 0.213680841326717 0.214477223146976 0.213298154862331 0.205498899878000 0.226684405465076 0.203235842578371 0.199234512323133 0.199234512323133 0.210172566348551 0.206893835089099 0.201939000424162 0.203418843070778 0.220234767549060 0.212765862719342 0.20019368463817 3 3|0 -|/ 4009518 4010329 4009896.5 4009282 4011406 - gene protein_coding_gene FALSE TRUE AT3G12620.1|AT3G12620.2 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to serine/threonine protein phosphatase 2C (PP2C6) [Arabidopsis thaliana] (TAIR:AT3G55050.2); similar to Os06g0717800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058597.1); similar to protein phosphatase 2C (PP2C) [Fagus sylvatica] (GB:CAB90634.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.371262547842994 2.8331042663489 0.0209967524486036 1 3.65278063081295 14.5000244997297 0.371262547842994 0.162621728724954
AT3G18390_at 8.9820927383183 9.0065781335672 8.34698074290741 8.3340991538872 9.26937998198592 8.57622461162947 9.16168612466673 9.02414211934864 9.5501229574567 9.40148931606948 9.27187991524715 9.5412383397396 9.01959338835577 9.19153893473306 9.4834167447691 9.33558463905294 8.81664257013922 9.08910393548564 9.30695853006164 0.103937743731832 0.104876145348821 0.113791236423087 0.11477868024567 0.109843421973163 0.114614651861859 0.107472315852137 0.110847518699183 0.114424981914805 0.103826955208936 0.108740006763131 0.103826955208936 0.108410907102643 0.107467659414001 0.10725117938243 0.106072243395833 0.10511985056806 0.114261591261871 0.105253292344102 3 3|0 +|/ 6316680 6317566 6317106.875 6313491 6317977 + gene protein_coding_gene FALSE TRUE AT3G18390.1 EMB1865 (EMBRYO DEFECTIVE 1865) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to Os05g0551900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056251.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.306426224564172 -2.83152302106258 0.0210491937083109 1 3.65051074467193 18.156722155607 -0.306426224564172 0.122386258779887
AT1G73960_at 7.68575451121506 7.4924352028255 7.29168948038091 7.3583511767742 7.89282051669005 7.32186044295249 7.40229884854775 7.08295345179119 8.08575415963245 8.17420008519106 7.56623827966414 8.00645204317495 7.72930149595243 7.52715751154413 7.19996750378631 7.8659436173546 7.6391825178727 7.51723504523836 8.58872744927731 0.204090960345611 0.214396074712494 0.211626490041166 0.213931942334559 0.205650823026124 0.212140684568701 0.204400266964822 0.214470683641955 0.204617642810813 0.205301922626631 0.205633008846836 0.207317728602343 0.210378207456350 0.203391457413774 0.205526863149088 0.207207660615870 0.215318748625823 0.203391457413774 0.203391457413774 1 1 - 27808872 27809361 27809170.909 27808706 27818107 - gene protein_coding_gene FALSE TRUE AT1G73960.1|AT1G73960.2 membrane alanyl aminopeptidase similar to TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor [Danio rerio] (GB:AAI07958.1); similar to Transcription initiation factor TFIID subunit 2 (Transcription initiation factor TFIID 150 kDa subunit) (TBP-associated factor 150 kDa) (GB:Q32PW3); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930)|similar to TBP-associated factor 2 [Gallus gallus] (GB:NP_001026679.1); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930) -0.300569622802810 -2.83020913347992 0.0210928705491126 1 3.64862456650753 15.3981847788257 -0.300569622802810 0.118614174376882
AT3G26510_at 9.21703258899119 9.95818794578413 10.3643042734329 10.6356518869149 10.2118241973620 10.3313303131957 9.71506377815535 10.1017138231716 9.71229412399615 10.1158881164414 10.0239562564421 9.60231465244985 10.3835274250758 10.0988040436823 9.23485969947303 10.8245735432645 10.7080835722180 9.91741402338935 10.2484674952924 0.119939777945456 0.115970703157792 0.121824400325677 0.118829006824573 0.117634813854751 0.127021769955652 0.116187026440104 0.118056910335856 0.128504821469035 0.119183518376217 0.121242085869336 0.118301906857065 0.116999628481621 0.122866523878731 0.122911153518076 0.113442775103878 0.121574186354183 0.116879181832269 0.114227868490896 3 3|0 -|/ 9713125 9713798 9713453.5 9711574 9713897 - gene protein_coding_gene FALSE TRUE AT3G26510.1|AT3G26510.2|AT3G26510.3|AT3G26510.4|AT3G26510.5 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70640.1); similar to PB1 domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96259.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.355709936895098 2.8299992811107 0.0210998551758890 1 3.64832330150121 20.1292593828306 0.355709936895098 0.153494780819389
AT3G58840_at 4.79990859488842 5.67211984069599 5.04998022198306 4.82954227704179 5.29218502229039 4.42186257460058 6.01003029982102 5.67897875864301 4.98756999442129 5.26958310441136 4.91663030113794 4.99344506360396 4.81355151198406 4.4708543867116 4.66471792581783 4.92507697807899 5.0552724015146 4.82781670081429 5.18168793261981 0.222250324336697 0.220672415684131 0.231076596988305 0.229035193524157 0.223836753117961 0.225384602171296 0.218878725279534 0.222405089199481 0.234281476506385 0.220608607580041 0.228093108101806 0.223274106588109 0.219676932255792 0.226010535401623 0.229701033340214 0.218892760287550 0.22915485836533 0.227781841491412 0.226147016868507 3 3 - 21768477 21769026 21768614.182 21768289 21769749 - gene protein_coding_gene FALSE TRUE AT3G58840.1|AT3G58840.2 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G06530.1); similar to hypothetical protein PY01156 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_728880.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.477363267321366 -2.82828037042998 0.0211571561160480 1 3.64585555181138 10.2091764500082 -0.477363267321366 0.22406413442948
AT2G42680_at 10.5624990889879 10.7148987452371 10.8653565670577 10.9801361000170 10.9529713761704 10.5931018205247 10.5426275205117 10.6243404739628 10.2830809728294 10.4169131686224 10.7703365591396 10.5037035959467 10.6018140233226 10.4816912348970 10.4400673447367 10.6661604386320 10.4887139237026 10.4709347796527 10.2458741109607 0.0837034975606602 0.0813943056386196 0.0817205623312783 0.0822894959884667 0.0803932495004554 0.0874197128556679 0.083614167089194 0.0833481113278998 0.0871026388490207 0.0831669690461669 0.081452710619238 0.0807642199339771 0.080971410525798 0.0856108720318321 0.083974557714931 0.0803932495004554 0.0874525044410808 0.0836054488273772 0.0824523701450716 2 2|0 +|/ 17782076 17783159 17782727.444 17781980 17783397 + gene protein_coding_gene FALSE TRUE AT2G42680.1 ATMBF1A/MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A); DNA binding / transcription coactivator One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is developmentally regulated. similar to ATMBF1B/MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B), DNA binding / transcription coactivator [Arabidopsis thaliana] (TAIR:AT3G58680.1); similar to Os08g0366100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061647.1); similar to orf [Ricinus communis] (GB:CAA89698.1); contains InterPro domain Multiprotein bridging factor 1, N-terminal; (InterPro:IPR013729); contains InterPro domain Helix-turn-helix type 3; (InterPro:IPR001387); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.237219164400226 2.82730842277266 0.0211896273250266 1 3.64446011971562 21.1636000390459 0.237219164400226 0.0718923104682956
AT4G08850_at 10.1734248947687 10.4211319984606 10.2218019416104 10.2428872774939 9.97495487641593 9.69490370691621 8.11604682210772 8.3958560068492 9.4781363013938 8.32553440617406 8.62842906929179 9.01384606891206 8.11922041093634 9.03509499078883 7.87578726633377 8.72764773857496 7.85345592178338 8.97930761391746 8.56668741478359 0.149563779814301 0.150072682184336 0.155646848161152 0.156909740554618 0.147459237245489 0.154497728578308 0.150498765917537 0.151715516112115 0.155001153259121 0.149704470053239 0.146083009341339 0.142333065320172 0.157430869113309 0.148773270792811 0.148351227116385 0.146178812637025 0.157600763827844 0.15041186021756 0.147494394877447 4 4|0 -|/ 5636726 5637816 5637355.8 5636486 5640633 - gene protein_coding_gene FALSE TRUE AT4G08850.1|AT4G08850.2 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE80260.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82675.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G35710.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE80260.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE82675.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE89207.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.248000640506364 2.82716249373072 0.0211945069987249 1 3.64425060476367 18.3147349451701 0.248000640506364 0.0808973152679697
AT1G20190_at 6.51360265333644 6.89114348893016 5.52850475851135 5.72149977425859 7.31759981302255 6.29644595004575 7.01228941488546 7.60091835518971 7.48728716913295 7.25318528361461 9.57300239865228 9.65276718489193 9.7252381951457 9.70969410981006 9.96621531114058 9.03683824324613 7.9366844074892 9.09459915216472 8.12024958929325 0.276770865552207 0.253435659595674 0.29233274640743 0.269101657808041 0.254372967457676 0.265240081813492 0.267580993441029 0.250859893555056 0.269005849532445 0.252526449880870 0.254005123943451 0.262144056310585 0.255500902458827 0.257680815986945 0.262338205171501 0.250859893555056 0.265022486336432 0.25617312418241 0.25287239265178 1 1 - 6998781 6999427 6999146.818 6998480 6999808 - gene protein_coding_gene FALSE TRUE AT1G20190.1 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN A11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) Identical to Expansin-A11 precursor (AtEXPA11) (Alpha-expansin-11) (At-EXP11) (AtEx11) (Ath-ExpAlpha-1.14) (EXPA11) [Arabidopsis Thaliana] (GB:Q9LNU3); similar to ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) [Arabidopsis thaliana] (TAIR:AT1G69530.2); similar to expansin [Glycine max] (GB:AAO15998.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.464081645255711 2.82661666411382 0.0212127690547751 1 3.64346693156911 15.0888108040214 0.464081645255711 0.216769421339042
AT2G22490_at 5.2216637895158 5.29458506883632 4.99785312055492 5.3418919301389 4.90776870881159 5.22760711070801 4.25075911573572 5.3774103240131 4.93835669689053 5.04118425902959 5.74595722239354 6.04344146313176 5.3232106094852 5.79656211946999 5.72764083788832 5.96565193015585 5.47786555084629 5.57408130103992 4.65923593616309 0.198512086560286 0.200931833061786 0.19940712789751 0.198506584498096 0.205663197912229 0.206862664488554 0.209764217976972 0.203405780388806 0.213117041334018 0.210882846162109 0.206073284593788 0.199739344207069 0.207914050019356 0.201920765771393 0.202695999227041 0.206182142047970 0.211331460504966 0.205031717112487 0.201374642599097 2 2 - 9561282 9561954 9561614.364 9560883 9563221 - gene protein_coding_gene FALSE TRUE AT2G22490.1 CYCD2;1 (CYCLIN D2;1); cyclin-dependent protein kinase regulator/ protein binding encodes a D-type cyclin whose transcription level is regulated by sucrose but not phytohormones or nitrate. Protein physically interacts with CDC2A. CycD2 kinase activity is regulated by sequestration of CycD2 protein in a form inaccessible to immunoprecipitation and probably not complexed to CDC2A. Identical to Cyclin delta-2 (CYCD2) [Arabidopsis Thaliana] (GB:P42752); similar to CYCD4,1 (CYCLIN D4,1), cyclin-dependent protein kinase regulator [Arabidopsis thaliana] (TAIR:AT5G65420.1); similar to cyclin D2.1 protein [Nicotiana tabacum] (GB:CAA09852.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin, C-terminal; (InterPro:IPR004367); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.454942362484206 2.82661266765534 0.0212129028256026 1 3.64346119361782 10.3706392343705 0.454942362484206 0.211616898379697
AT1G66070_at 6.12521479568241 6.10244625051819 6.33836600875084 6.3612953705306 6.09842640300833 5.95906864504011 6.26608768725662 6.36654185793706 5.8589772771358 5.61840849542117 6.26938257752151 6.1398672439107 6.09111649735542 6.04349253166375 6.45484213713629 6.04138751453782 6.09788569533277 6.0767991027484 5.70037300598099 0.172825229070744 0.168935491542256 0.177833946969217 0.174362626952960 0.172441119569631 0.177535730853037 0.169825005452562 0.184322230744171 0.185595143634330 0.171829467798363 0.175698567454955 0.175725360801871 0.169929662233754 0.176800396002529 0.167286275878959 0.170480962918476 0.173218948063574 0.170708050658571 0.176325240870629 1 0|1 /|- 24599862 24600689 24600348.556 24599549 24602181 - gene protein_coding_gene FALSE TRUE AT1G66070.1 translation initiation factor-related similar to translation initiation factor-related [Arabidopsis thaliana] (TAIR:AT5G37475.1); similar to Os02g0122300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045725.1); similar to BRI1-KD interacting protein 121 [Oryza sativa (japonica cultivar-group)] (GB:BAD11349.1); contains domain SUBFAMILY NOT NAMED (PTHR21681:SF4); contains domain FAMILY NOT NAMED (PTHR21681) 0.200071764331873 2.82547086667701 0.0212511570955017 1 3.64182181388777 12.1410640050264 0.200071764331873 0.030250325197365
AT4G31820_at 8.00755296140585 8.44862719997165 5.9421452768728 6.56872927790634 8.36112785707877 7.86561993415442 7.2652118242768 7.75078954486805 8.10132841464094 8.56927825564472 9.21083413873742 8.94951815340158 8.99133184963935 8.89301037188483 8.63014139744077 8.2948583249097 6.13406345575371 8.24981030635229 8.92100354161958 0.203456131626315 0.197263798510663 0.230381440329563 0.207756554780518 0.199706568372392 0.233724324171023 0.227881945796203 0.198271085837267 0.211400037025931 0.199424012271384 0.208190684692643 0.205458722400777 0.198846834849238 0.213257000546810 0.216492046122491 0.202641763622922 0.254615414363970 0.203903357313331 0.202571576545926 4 4 - 15390795 15391445 15391196.909 15390656 15394436 - gene protein_coding_gene FALSE TRUE AT4G31820.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G67440.1); similar to BTB/POZ; NPH3 [Medicago truncatula] (GB:ABE93900.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) -0.39749026683215 -2.82363164330102 0.0213129265032733 1 3.63918096647697 16.0010918531002 -0.39749026683215 0.178880924626505
AT1G20770_at 8.19969198361435 7.88675363517031 7.44630523774055 7.65446693240939 7.3962629729873 6.73912487853555 7.79746769568426 7.63872870293833 6.44137662755864 6.69096871623654 6.707542720375 6.78028181225723 5.94783695781526 6.7173000726713 6.90219668250641 5.6951397282678 6.10209771282862 5.44124679807644 5.9527283944178 0.202950552151122 0.202950552151122 0.218553882263898 0.203511042278711 0.206023901889318 0.219662021729685 0.204043140267062 0.20826314413536 0.223257541605160 0.213939857821058 0.211569139043491 0.212014395483968 0.208290570914776 0.222832741185963 0.213675196856070 0.215199799085875 0.224027477047760 0.231426319728319 0.202950552151122 1 1 - 7215343 7216158 7215796.182 7215004 7216730 - gene protein_coding_gene FALSE TRUE AT1G20770.1 similar to Os04g0509200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053277.1); similar to hypothetical protein LOC503608 [Danio rerio] (GB:NP_001013313.1) -0.323303217202423 -2.8235069402705 0.0213171212633353 1 3.63900190641064 13.9190485332204 -0.323303217202423 0.133856439409345
AT3G42640_at 4.74325128618566 4.61801200290486 4.91119301546115 4.24876284437966 5.23365820510953 4.88148490553482 5.36406550607783 4.60082236980006 6.3395337422836 5.31742089756655 5.21056755902838 4.90551041080658 4.8908165076457 4.91711221351909 4.48963315428898 4.95912876734988 4.81896349624895 4.60696810739761 5.31680202201578 0.225661476213419 0.219693552524354 0.226813589650839 0.218045661372807 0.220686175683938 0.2304988221806 0.221956991189133 0.218316100639517 0.232460171129833 0.235897921191541 0.222092535536834 0.217008248680435 0.225559165195247 0.225609765970470 0.221286951492054 0.219248568147315 0.219545828463381 0.239239343305508 0.217723647209353 3 3|0 +|/ 14738217 14739004 14738509.375 14735295 14739196 + gene protein_coding_gene FALSE TRUE AT3G42640.1 AHA8 (ARABIDOPSIS H(+)-ATPASE 8); ATPase Identical to ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8) (AHA8) [Arabidopsis Thaliana] (GB:Q9M2A0); similar to AHA6 (ARABIDOPSIS H(+)-ATPASE 6), ATPase [Arabidopsis thaliana] (TAIR:AT2G07560.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to proton P-ATPase [Nicotiana tabacum] (GB:AAR32129.2); similar to plasma membrane H+-ATPase [Daucus carota] (GB:BAD16688.1); similar to putative plasma membrane ATPase [Capsella rubella] (GB:ABA18104.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.410422204436904 -2.8229496201984 0.0213358787605635 1 3.63820164683166 10.0790344740938 -0.410422204436904 0.18647109617336
AT1G08970_at 9.29357477491337 9.2027067752683 9.21656187169521 9.31155525554104 9.75547562343809 9.60861228371735 8.99816948707849 9.20322840716849 8.65045157174567 8.41432240967137 8.46431996330765 8.43112919182595 8.81312444362755 8.63806724446339 8.45926829310318 8.74128184610172 8.70372820616598 8.46919265086945 8.31947192232058 0.128373381063135 0.122937952531412 0.123227345808912 0.118930046699190 0.128373544864659 0.129908846429163 0.125347209220012 0.119590383580808 0.125071087990030 0.123869330677057 0.126724307138633 0.122115847867419 0.124089227976256 0.118930046699190 0.130848838763201 0.121900548081273 0.130755199262579 0.122213796224022 0.126647067315451 1 1 + 2883432 2883798 2883607.818 2882527 2884340 + gene protein_coding_gene FALSE TRUE AT1G08970.1|AT1G08970.2|AT1G08970.3|AT1G08970.4 HAP5C (HEME ACTIVATED PROTEIN 5C); DNA binding / transcription factor|HAP5C (HEME ACTIVATED PROTEIN 5C); DNA binding heme activated protein (HAP5c) Identical to Nuclear transcription factor Y subunit C-9 (AtNF-YC-9) (Transcriptional activator HAP5C) (NFYC9) [Arabidopsis Thaliana] (GB:Q8L4B2;GB:O04033;GB:Q9SNZ0); similar to CCAAT-box binding transcription factor Hap5a, putative [Arabidopsis thaliana] (TAIR:AT1G54830.3); similar to At1g08970/F7G19_16 [Medicago truncatula] (GB:ABD32395.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.213615038088998 2.82147540104352 0.0213855777378700 1 3.63608474120705 17.8494502004420 0.213615038088998 0.0492214247251643
AT4G01810_at 6.76448941433549 6.77953641627867 6.36197080612527 6.9397760722406 6.19002232937616 6.20218691081341 6.20875578886769 6.6204301359366 6.13108690434224 5.56104445751159 6.55371174386514 6.57163335999439 6.69230069347149 6.69812778048518 6.50017038354037 6.7999068320066 6.23831293675486 6.39054374485338 5.62989550501221 0.210878687959773 0.198300061580763 0.211142384309144 0.213077070604603 0.198191908395187 0.213496318608426 0.201536892400600 0.202326524925616 0.20937942534962 0.200953960266632 0.196766053548675 0.196766053548675 0.198539642481148 0.200264972080754 0.20074228452014 0.196766053548675 0.213321794501939 0.203571429173744 0.201055585019527 4 4|0 -|/ 776740 777611 777270.444 776488 780355 - gene protein_coding_gene FALSE TRUE AT4G01810.1 protein transport protein-related similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to putative Sec23 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44981.1); similar to Os01g0321700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042891.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Gelsolin; (InterPro:IPR007122); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.30588278476683 2.82039276712271 0.0214221512776115 1 3.63453007316074 12.6731946792435 0.30588278476683 0.122821161200992
AT1G73990_at 7.85213176066227 7.60559492873707 7.45206117526035 7.52549958193768 7.60646574062376 7.05669397726604 8.2571491576688 8.10801718925365 7.76248042362966 8.18561902282265 7.90491767000765 7.9343387456474 7.84896826442515 7.9485683339688 7.91563409173348 8.47730277177786 7.62156545902645 8.11548769160127 8.03265491121304 0.162905525431831 0.144751178718722 0.160287515636612 0.148157030951938 0.14375802916752 0.174262997678579 0.156402437776537 0.147495659484715 0.158509865560128 0.148748479793540 0.146698235525470 0.148766757889425 0.152997485280644 0.155962575298789 0.154111922916082 0.151489369471178 0.155854347395856 0.147858553427969 0.150311170764602 1 1 + 27831578 27832440 27832152.545 27828094 27832587 + gene protein_coding_gene FALSE TRUE AT1G73990.1 SPPA (signal peptide peptidase); protease IV/ serine-type endopeptidase Encodes a putative protease SppA (SppA). similar to signal peptide peptidase SppA, 67K type [Solibacter usitatus Ellin6076] (GB:YP_829050.1); similar to Os02g0728100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047998.1); contains InterPro domain Peptidase S49, SppA; (InterPro:IPR004635); contains InterPro domain Peptidase S49, protease IV; (InterPro:IPR004634); contains InterPro domain Peptidase S49; (InterPro:IPR002142) -0.284140023836720 -2.82032951602104 0.0214242900115007 1 3.63443924269458 15.6651680211322 -0.284140023836720 0.108164417982151
AT2G37550_at 5.40682100071896 5.12727425143549 5.03500482687872 4.87322026367984 4.81448482229185 4.85997413539129 5.05437951921848 5.17284045961553 5.26975479711689 4.83478648750052 6.19168688948977 6.13684207362317 5.79700646670392 5.60969062029065 5.73965066801141 5.47273031469749 5.35658623606453 4.797911407191 4.58231619792042 0.186121221923337 0.190140006106437 0.203199570925668 0.197243074313788 0.184157543348020 0.185730744569075 0.188684233170557 0.180769244378352 0.196621965905482 0.190956384408500 0.197648479649939 0.188555843840925 0.184303819357222 0.19667491492547 0.189475200054672 0.180477047006056 0.185099163628206 0.190565059314826 0.179365589661849 2 2 - 15762630 15763605 15763029.909 15762175 15764679 - gene protein_coding_gene FALSE TRUE AT2G37550.1|AT2G37550.2 ASP1 (PDE1 SUPPRESSOR 1); DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to AGD6, DNA binding [Arabidopsis thaliana] (TAIR:AT3G53710.2); similar to putative Asp1 [Trifolium pratense] (GB:BAE71192.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.223743063988180 2.8198453924558 0.0214406671327208 1 3.63374402118441 10.3096910325812 0.223743063988180 0.0600534348040995
AT1G24190_at 7.14193801453294 7.71969504298776 7.5280242545049 7.68390715334164 8.03804615912948 7.7927934000984 7.08012521804104 7.34305699382449 6.44549704880074 5.8257330200449 6.12868454873966 6.270657117531 6.52580223275143 6.15206907023708 6.10583386028735 6.24274638158651 6.86801846402917 6.46607503488377 6.26560714237773 0.223084314824843 0.216959538709553 0.224649370865730 0.216934955877336 0.225559369877781 0.220479093398266 0.218767360829803 0.22634075875555 0.239618161579644 0.228045075267490 0.222772554842110 0.216666895859833 0.216730041530831 0.228605945965944 0.216353436139813 0.215850486008598 0.228515192271822 0.221101794972490 0.225088874837928 1 1|0 -|/ 8564300 8565205 8564670.111 8563547 8569985 - gene protein_coding_gene FALSE TRUE AT1G24190.1 ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) Enhances AtERF7-mediated transcriptional repression. RNAi lines show ABA hypersensitivity. Interacts with ERF7 and HDA19. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01320.1); similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to transcriptional repressor protein-related [Musa balbisiana] (GB:ABF70137.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE86951.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.302764513051669 2.81968654842034 0.0214460433716732 1 3.63351591238946 13.8029140674727 0.302764513051669 0.120814553256699
AT2G28540_at 4.9027496707303 4.98059886714173 5.21939273105549 5.03678352915623 5.64292565661165 5.18796659268637 5.18234073842033 4.93058527889193 4.18746167221555 3.8899698141869 4.14101239826013 4.42220988100991 4.33922525114725 4.56239000459574 4.15433221683853 4.68489840652856 4.55871325988552 4.25123767911319 4.30520294413376 0.154206879836625 0.151885677025579 0.153800474866695 0.157096788899866 0.155641021608086 0.164628417274340 0.153740097049284 0.153553926473095 0.154918203531295 0.153461444774392 0.153386104790567 0.153672181202265 0.154393004605380 0.152200829895301 0.156570266203533 0.151993557222031 0.154737644965738 0.154431269298326 0.158200370712914 2 2|0 +|/ 12226367 12230623 12228689.55 12225122 12230905 + gene protein_coding_gene FALSE TRUE AT2G28540.1|AT2G28540.2 nucleic acid binding / nucleotide binding / protein binding / zinc ion binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G45630.1); similar to RNA-binding re (GB:ABE87889.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.267203032787489 2.81713976622468 0.0215324311125768 1 3.62985844671677 9.3938164817623 0.267203032787489 0.0963178137915832
AT4G17340_at 11.1775948627629 11.4754119588834 11.9227076182112 12.1947971183538 12.4740489097756 12.1235426913657 12.5783011702157 12.810524564052 12.2603615552072 12.3570069772908 12.7061957001116 12.4028905349703 12.7355701166303 12.8486436817737 12.2956452860394 12.6874303026061 12.6939596737750 12.7555586607906 12.1698660612863 0.080601988745938 0.0787791169058785 0.0828302976834345 0.0781431655923382 0.0792867886600662 0.0852942977893819 0.0858397803081998 0.0781431655923382 0.089593023364903 0.079292716605248 0.0781431655923382 0.07954816031767 0.0785175977037333 0.079113716577544 0.0801056749248349 0.0781431655923382 0.0910435227655645 0.0804403403151386 0.0781431655923382 4 4 + 9699529 9700203 9699942.545 9699265 9700422 + gene protein_coding_gene FALSE TRUE AT4G17340.1 DELTA-TIP2/TIP2;2 (tonoplast intrinsic protein 2;2); water channel Identical to Probable aquaporin TIP2.2 (Tonoplast intrinsic protein 2.2) (TIP2.2) [Arabidopsis Thaliana] (GB:Q41975;GB:O23577); similar to AtTIP2,3 (Arabidopsis thaliana tonoplast intrinsic protein 2,3), water channel [Arabidopsis thaliana] (TAIR:AT5G47450.1); similar to Tonoplast intrinsic protein, putative [Brassica oleracea] (GB:ABD65120.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.273320579386877 2.81602855373294 0.0215702357205298 1 3.6282625350035 24.5461902496268 0.273320579386877 0.100834607969453
AT4G31460_at 5.63780223942614 5.88481340015545 5.46343149930517 5.555490416325 5.89450415682754 5.93232587484154 6.09994532671238 6.18688188078385 5.13627432203033 5.60388879644059 5.28769534028899 5.60700416018938 5.01714042792351 5.13693614667555 5.56527882185028 5.42363867967864 5.22547509113318 4.85185972017126 5.60517388177407 0.199402804589144 0.203325547649539 0.199112641743009 0.20062956925715 0.197463107375545 0.215855583747639 0.199189467009086 0.203512405798830 0.209860468924384 0.197463107375545 0.202847150372195 0.200648084845835 0.201028213891449 0.205678745873022 0.201532361803978 0.204243973051862 0.209528002907144 0.202105480426809 0.201431837494788 4 4 - 15259813 15260774 15260336.545 15259475 15261244 - gene protein_coding_gene FALSE TRUE AT4G31460.1 ribosomal protein L28 family protein similar to hypothetical protein DDBDRAFT_0204554 [Dictyostelium discoideum AX4] (GB:XP_640528.1); similar to Os07g0544900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059912.1); contains InterPro domain Ribosomal protein L28; (InterPro:IPR001383) -0.212494921602062 -2.81517222302662 0.0215994154763608 1 3.62703264661157 11.1883114569157 -0.212494921602062 0.0484793435372204
AT2G46090_at 7.29237085259464 7.59882815151069 6.86111890403366 7.30258321466337 7.52359951075665 7.21950701082654 7.32341671415468 7.65902777657899 7.24007937164208 7.02489194471407 6.74231349718201 7.06790773612201 6.60057396934764 6.96168414224357 7.00483928835433 6.85160661604908 5.90335059245418 6.66187425888642 7.00360090955451 0.214956735849037 0.206600343420349 0.210644823883068 0.209125699144061 0.205050337870536 0.220887590313206 0.210709323807248 0.211183470024677 0.212274195759095 0.205513512176621 0.215184387276411 0.20686913144568 0.211269386505614 0.205608930909602 0.203531870676746 0.203531870676746 0.216113381267696 0.211883008663934 0.210165168609968 2 0|2 /|+ 18959443 18960122 18959710.6 18957929 18960348 + gene protein_coding_gene FALSE TRUE AT2G46090.1 diacylglycerol kinase family protein Encodes a putative sphingosine kinase (SphK) containing the five conserved domains (C1-C5) previously identified in SphKs. similar to ATLCBK1 (A. THALIANA LONG-CHAIN BASE (LCB) KINASE 1), diacylglycerol kinase [Arabidopsis thaliana] (TAIR:AT5G23450.3); similar to conserved hypothetical protein TIGR00147 [Myxococcus xanthus DK 1622] (GB:YP_632849.1); similar to Os03g0125400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048817.1); contains InterPro domain Conserved hypothetical protein 147; (InterPro:IPR005218); contains InterPro domain Diacylglycerol kinase, catalytic region; (InterPro:IPR001206) -0.303482013181670 -2.81502352373489 0.0216044865830846 1 3.6268190770202 14.2544529358316 -0.303482013181670 0.121621094967403
AT1G33680_at 6.62142562535306 6.62093945578496 6.59187441684244 6.82020155075928 7.0976308922555 7.14254894770894 6.68171570755135 6.67294615967993 6.25455736154342 5.6508831196578 6.28281471566908 5.90709706796654 6.30995282366103 6.27118919507364 5.72495769364272 6.45001568695208 6.14713041873574 6.13375670618355 6.11064136070824 0.177523668556084 0.177252605473908 0.181665618283641 0.178656766601024 0.180814466693841 0.17870112233674 0.176583494274525 0.179472526957445 0.180827106188404 0.184161469657922 0.175120695763842 0.176789894509331 0.176835538157778 0.175158069469248 0.174744277965865 0.173087444304935 0.175389927270932 0.178012692197078 0.177211722965087 1 1|0 +|/ 12204810 12208157 12206856.944 12203925 12208678 + gene protein_coding_gene FALSE TRUE AT1G33680.1 nucleic acid binding similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G10070.1); similar to hypothetical protein MtrDRAFT_AC157373g6v1 [Medicago truncatula] (GB:ABD33354.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.205905444657472 2.81463863547973 0.0216176181431782 1 3.62626627639004 12.8605227957196 0.205905444657472 0.04029909696019
AT1G43580_at 7.77327519332427 7.79131776126681 7.0288799937308 7.51820601052707 8.06709901752677 7.93888047112096 7.63202932940736 7.42765375243911 7.57020200511127 7.41948795270232 7.55438542932253 7.30213584707775 7.06408214786235 7.36932452681746 7.02878509760134 7.05577767024148 6.66745550524237 6.83663426739192 7.8730464941186 0.167409126194629 0.166136236929945 0.165279278812127 0.164526679012708 0.160318628916084 0.161350479712747 0.163646331132013 0.177638041145121 0.163494613493506 0.161390092870409 0.169528860383671 0.167422999058808 0.169130228414384 0.167548385528275 0.170275959212260 0.163046222174396 0.178282495631678 0.165178235064430 0.168513393878178 1 1|0 -|/ 16413116 16413716 16413382.2 16412972 16415168 - gene protein_coding_gene FALSE TRUE AT1G43580.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83163.1); contains domain SPHINGOMYELIN SYNTHETASE (PTHR21290) -0.264446112541201 -2.81452389525349 0.0216215344185273 1 3.62610147809678 15.0125350472122 -0.264446112541201 0.0944654761722494
AT1G67340_at 5.28906266690443 6.2573234067355 6.68811439848133 6.37072734270322 7.02669183526924 6.32042967795067 6.38920124972153 6.29994734999233 4.01744020818201 4.53062180015847 4.24117319020579 5.17216283163864 4.85347038442711 5.27315350324136 5.0438173061344 5.41197176573296 5.62416372149587 4.28565026294936 5.29173988448189 0.275988661720371 0.269317662624219 0.266239946982451 0.266239946982451 0.266239946982451 0.281970793419140 0.266239946982451 0.270533371850967 0.276005806130077 0.266239946982451 0.268474435750327 0.268729927106538 0.266239946982451 0.268841140168487 0.286862906384291 0.266239946982451 0.283381074647511 0.277781457764804 0.273822844924648 1 1 + 25234706 25235175 25234938.364 25233928 25235503 + gene protein_coding_gene FALSE TRUE AT1G67340.1 zinc finger (MYND type) family protein / F-box family protein similar to zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT5G50450.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88375.1); similar to Os01g0921800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045230.1); similar to Os04g0385600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052618.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.458767609191699 2.81215239559071 0.0217026409701805 1 3.62269523521446 11.1309185751376 0.458767609191699 0.215106034989474
AT4G01100_at 8.75887299644924 8.74774617235767 8.98074223675619 8.92636394234426 9.29729083171297 9.05265370512582 9.69909156122134 9.5616762943149 8.2545587291403 8.77542962203289 9.31343868498908 9.08391533970119 9.20212688638579 9.20534485682743 9.0164905897332 9.14679910047276 9.21100570912538 8.5935158324286 8.5982040960703 0.12577000807674 0.121876997208199 0.123620189419679 0.126821779072095 0.121876997208199 0.138080525775259 0.121895907950889 0.121876997208199 0.141178166226321 0.126808011667795 0.128737273907138 0.124063069617814 0.121876997208199 0.127552485722915 0.124232728463756 0.124238200962510 0.135348397641970 0.132627425011297 0.131871610060221 4 4|0 +|/ 478741 479393 479080.5 477152 479936 + gene protein_coding_gene FALSE TRUE AT4G01100.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT5G51050.1); similar to Os05g0585900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056459.1); similar to mitochondrial carrier-like protein [Solanum tuberosum] (GB:ABC01898.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.213132366054558 2.81191038552286 0.0217109353880571 1 3.62234761722995 17.9477099378882 0.213132366054558 0.0494981973213136
AT2G06850_at 9.1529044773827 9.79195739135509 6.64158279589199 7.35004217365532 9.16202145367515 9.09338175334204 9.22500713272692 10.0747449091043 10.6499290990795 10.0710983674356 11.8767209596993 11.4839167577294 10.4550524368356 11.1775993614210 11.3898091667143 10.4645026104517 9.34885809533473 11.4593677492684 10.4711327757323 0.128067414059365 0.124167505322464 0.176011362675673 0.160945430974829 0.124195806824906 0.137209100944436 0.125175461404043 0.124722541389745 0.13751801875676 0.128783576276219 0.128509229646102 0.127407054598072 0.127294573207661 0.125269854585301 0.129392529095499 0.127578290187975 0.134054909159639 0.127350174805576 0.12688676687933 2 2 + 2765138 2765443 2765300.273 2763523 2765717 + gene protein_coding_gene FALSE TRUE AT2G06850.1 EXGT-A1 (ENDO-XYLOGLUCAN TRANSFERASE); hydrolase, acting on glycosyl bonds endoxyloglucan transferase (EXGT-A1) gene Identical to Xyloglucan endotransglucosylase/hydrolase protein 4 precursor (EC 2.4.1.207) (At-XTH4) (XTH-4) (XTH4) [Arabidopsis Thaliana] (GB:Q39099;GB:Q94F33); similar to EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT5G13870.1); similar to Xyloglucan endotransglucosylase/hydrolase precursor (BobXET16A) (GB:Q6YDN9); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.469902394367575 -2.81189957022486 0.0217113061370255 1 3.62233208231571 19.4886378306905 -0.469902394367575 0.221419977429140
AT4G18480_at 10.8635436772542 11.1421938591525 10.4004407420641 10.5106433417749 10.8679889155726 10.4574183905023 11.6500193761319 11.5966854368716 11.6453084568127 11.6868680306556 12.0461273745404 12.2955636724987 11.5081617651335 11.7717044034194 12.2204202145856 11.7116328040834 11.1551968494833 11.5761909683680 11.2999746113533 0.097343623678788 0.0956894039215515 0.0987952896280957 0.0978778692868718 0.099391434957714 0.102288584141183 0.0972080652932838 0.0954930062496709 0.102384491720626 0.095201768323751 0.095201768323751 0.095201768323751 0.095201768323751 0.0999323441370224 0.0955928567104025 0.095201768323751 0.101298952811299 0.102031262353331 0.0961903294779488 4 4 - 10201908 10202442 10202177 10201683 10203480 - gene protein_coding_gene FALSE TRUE AT4G18480.1 CHLI1 (CHLORINA 42); magnesium chelatase Encodes the CHLI subunit of magnesium chelatase which is required for chlorophyll biosynthesis. Identical to Magnesium-chelatase subunit chlI, chloroplast precursor (EC 6.6.1.1) (Mg-protoporphyrin IX chelatase) (Protein CS/CH-42) (CHLI) [Arabidopsis Thaliana] (GB:P16127); similar to CHLI2, magnesium chelatase [Arabidopsis thaliana] (TAIR:AT5G45930.1); similar to Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (GB:P93162); similar to Magnesium-chelatase subunit chlI, chloroplast precursor (Mg-protoporphyrin IX chelatase) (GB:O22436); similar to sulfur [Nicotiana tabacum] (GB:AAG35472.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Magnesium chelatase, ChlI subunit; (InterPro:IPR000523); contains InterPro domain Magnesium chelatase ATPase subunit I; (InterPro:IPR011775) -0.256206674816932 -2.81162391081422 0.0217207579499407 1 3.62193612810483 22.6009542788094 -0.256206674816932 0.0884448513267781
AT1G34300_at 7.83584756496282 8.12093501864164 7.81912557060857 7.62891410887958 8.49148647823887 8.3618059780561 6.40032375096316 6.75689622394743 7.81663085894751 7.3555687143913 7.3775070884904 7.41280383751862 7.28975160698655 7.44523846505249 6.21190449318013 7.70885134515416 7.34675849878105 7.66360572470203 7.60319165725567 0.181359003222601 0.176978049503048 0.181526208942146 0.180220758190748 0.183108941447964 0.174051884696207 0.182019358477029 0.181138305745816 0.176743883142443 0.174411503685449 0.182169861215238 0.184017534928587 0.178468790172394 0.183272690108109 0.184061871606341 0.172426546390126 0.176377025717954 0.172505613404552 0.171635634971471 1 1 + 12505381 12505892 12505677.091 12503384 12506026 + gene protein_coding_gene FALSE TRUE AT1G34300.1 lectin protein kinase family protein similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G19130.1); similar to Os03g0838100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051835.1); similar to Os06g0494100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057686.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD46526.1); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.256043974967682 2.80932455476936 0.0217997630398386 1 3.61863323715727 15.1263416914613 0.256043974967682 0.0884809080147092
AT1G13270_at 8.69580654580492 8.53696306397611 8.026807087427 8.15359426252546 9.11536078423557 8.41589053336356 7.44456142157303 6.8734147660747 6.30494742425183 6.60073199861228 5.78523985164199 6.15788722322713 6.5379737086748 6.88947785863186 6.85179293240634 5.90461478458318 6.768222776964 6.26720622045435 5.71746460197666 0.232581198078867 0.227681162817374 0.229803335053174 0.236170613528183 0.229746031488454 0.231232015197675 0.232231489541357 0.233086060387019 0.238470522702682 0.226189686237765 0.227578781472075 0.226238022394480 0.227460061393886 0.226709740713996 0.234239067647536 0.228735182436368 0.240986111591238 0.237023963559476 0.230233399496909 1 1|0 +|/ 4545900 4547095 4546623.9 4544950 4547309 + gene protein_coding_gene FALSE TRUE AT1G13270.1|AT1G13270.2 MAP1C (METHIONINE AMINOPEPTIDASE 1B); metalloexopeptidase Encodes a methionine aminopeptidase formerly called MAP1B, renamed to MAP1C. Identical to Methionine aminopeptidase 1B, chloroplast precursor (EC 3.4.11.18) (MetAP 1B) (MAP 1B) (Peptidase M 1B) (MAP1B) [Arabidopsis Thaliana] (GB:Q9FV52;GB:Q9FX70); similar to MAP1B (METHIONINE AMINOPEPTIDASE 1C), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT3G25740.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to Putative Xaa-Pro aminopeptidase (ISS) [Ostreococcus tauri] (GB:CAL55082.1); similar to OSJNBa0085I10.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03566.2); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467)|Identical to Methionine aminopeptidase 1B, chloroplast precursor (EC 3.4.11.18) (MetAP 1B) (MAP 1B) (Peptidase M 1B) (MAP1B) [Arabidopsis Thaliana] (GB:Q9FV52;GB:Q9FX70); similar to MAP1B (METHIONINE AMINOPEPTIDASE 1C), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT3G25740.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to OSJNBa0085I10.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03566.2); similar to hypothetical protein DDBDRAFT_0206394 [Dictyostelium discoideum AX4] (GB:XP_641258.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) 0.363906981078371 2.80779300598642 0.0218525501455568 1 3.61643313783547 14.4593081053825 0.363906981078371 0.160182950371519
AT3G11660_at 11.0326006409534 11.3706901287391 11.3831927431487 11.7143364412249 11.5481971696305 11.5489030979642 11.2669127513721 11.4764693558249 10.7028949441855 10.8535416762013 10.8349521867133 10.7219387760758 11.2570523942116 11.0640184936931 10.4391821375337 11.3963191301715 11.1968141222888 11.1538963955193 10.7113815922032 0.0862364950306915 0.083540291866747 0.0854356868123694 0.083540291866747 0.083540291866747 0.0919270762046677 0.083540291866747 0.0856279478396474 0.0878651144091275 0.083540291866747 0.0859874096189359 0.0841140470366175 0.083540291866747 0.0852041299433957 0.0859449040860345 0.083540291866747 0.0893112360354428 0.0867487568060997 0.0859688683810035 3 3 - 3679049 3679588 3679316.636 3678841 3679949 - gene protein_coding_gene FALSE TRUE AT3G11660.1 NHL1 (NDR1/HIN1-like 1) encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive. similar to harpin-induced family protein / HIN1 family protein / harpin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G52470.1); similar to Os12g0159600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066211.1); similar to H0913C04.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86171.1); similar to Os11g0157200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065799.1); contains InterPro domain Harpin-induced 1; (InterPro:IPR010847) 0.25703572204944 2.80469730969324 0.0219596488583208 1 3.61198582393356 22.2996433454685 0.25703572204944 0.0895673029113347
AT4G00170_at 6.37441373508854 6.18042184306574 6.27904950047837 6.24330486383202 6.70352976412467 6.29414927633141 6.17674466652207 5.94267025701041 5.77703029086819 5.49350022144323 6.1799899875935 5.78249181973049 5.90771814268335 5.7860592524054 6.19448323426512 5.81564536840461 6.29304453878825 5.60614496541087 5.6679659312732 0.208436548076719 0.206299719326266 0.216264560435260 0.216006322159085 0.213248843356292 0.219052521511193 0.216708464219457 0.220125299165680 0.23541497705169 0.205830885099703 0.202761871350364 0.211333466631307 0.212533926382643 0.209894902253754 0.208922138429098 0.202280318064212 0.205396672945798 0.215984885549046 0.218914899666715 4 4|0 -|/ 70796 71702 71324.333 70477 72211 - gene protein_coding_gene FALSE TRUE AT4G00170.1 vesicle-associated membrane family protein / VAMP family protein similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1), protein binding [Arabidopsis thaliana] (TAIR:AT3G60600.1); similar to Major sperm protein [Medicago truncatula] (GB:ABE80895.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.255488704117629 2.80352687638049 0.0220002813639953 1 3.61030426669617 12.0702168107342 0.255488704117629 0.0884601793833161
AT3G08850_at 7.22617286218338 7.16117008818338 7.26731257051317 7.23585147176013 8.31864009306289 7.5731252269078 7.0427828624656 7.32556850443671 7.1911363370713 6.40904381433396 7.02122361738052 6.81679872013937 7.31932870676001 7.5404490245286 6.45971865178195 7.5199990379103 6.95265264669713 7.03808266196438 6.91037459883221 0.212957796360796 0.206079697392778 0.212374317435399 0.207472964892754 0.206721467572214 0.223034103811899 0.217389827744765 0.206813081080025 0.205367346719397 0.223886548904444 0.205367346719397 0.209270523442341 0.209422032705281 0.210689871844005 0.211923643400756 0.205367346719397 0.226130679123544 0.206806392751064 0.207526664662607 3 3|0 -|/ 2687011 2688026 2687358.444 2686589 2695306 - gene protein_coding_gene FALSE TRUE AT3G08850.1 RAPTOR1B (RAPTOR1); nucleotide binding / protein binding Encodes one of two Arabidopsis RAPTOR/KOG1 homologs. RAPTOR proteins are binding partners of the target of rapamycin kinase that is present in all eukaryotes and play a central role in the stimulation of cell growth and metabolism in response to nutrients. Mutants show embryo lethal phenotype which occurs at pre-globular stage. May interact with TOR kinase in a rapamycin like signaling pathway. Interacts with TOR and S6K1 in vivo. Overexpression of RAPTOR1 rendered the S6K1 osmotic stress insensitive. similar to RAPTOR1A (RAPTOR2), nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G01770.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21850.1); similar to transducin/WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAR82959.1); similar to WD40-like [Medicago truncatula] (GB:ABE88896.1); contains InterPro domain Regulatory associated protein of TOR; (InterPro:IPR004083); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain HEAT; (InterPro:IPR000357) 0.328244405613261 2.80233863681079 0.0220416109480458 1 3.60859707228584 14.3540195683430 0.328244405613261 0.138549178127313
AT3G50550_at 6.50565233951292 6.5919695692058 7.04977429767737 6.8166838937306 6.60492064963145 6.03347285387372 6.49760293567764 6.4165915011562 5.1095570321835 5.8324143939792 6.27357865774897 5.9458247722922 5.59852823109804 6.72562340803553 5.55597009145169 5.55175931599417 6.26020699473127 5.19950567837139 5.39553251380311 0.228947681027748 0.225834164574047 0.226041828009791 0.227012786494344 0.232439577738629 0.23543642077466 0.227770966094697 0.230923012809894 0.233526006711514 0.240526838529049 0.230736747294206 0.229038577641259 0.228453539487638 0.225834164574047 0.235578361100834 0.228370245527006 0.230710010261234 0.229005692549270 0.228157815170773 3 3|0 +|/ 18770483 18770798 18770664 18770444 18771489 + gene protein_coding_gene FALSE TRUE AT3G50550.1|AT3G50550.2 |unknown protein similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to hypothetical protein 244.t00012 [Entamoeba histolytica HM-1:IMSS] (GB:XP_650128.1)| 0.283149417200145 2.80217310208602 0.0220473749285068 1 3.60835923711731 12.2319381502436 0.283149417200145 0.108749020805761
AT2G31390_at 9.10686328346293 9.0381892873998 9.2039447291019 9.21296264706487 8.8144644011498 8.50539892378716 7.51406479015551 7.73158577524009 7.66956756244069 6.97847244537485 7.05502896199474 6.98405997366769 7.20191810830376 7.49427364128335 7.10628240944047 7.37702764550731 7.12616940765695 6.70573475437747 7.13098065591168 0.210608725696948 0.206299170901378 0.20768679070508 0.210659319802206 0.209534429632016 0.212490499061312 0.208369228989702 0.212742109822737 0.216926134603970 0.207711292982175 0.209604814005214 0.204605890660143 0.206333476600859 0.207880086038889 0.204296638366341 0.20702489751746 0.218487107016448 0.211623307219331 0.204296638366341 2 2|0 -|/ 13390723 13391922 13391299.2 13390500 13393286 - gene protein_coding_gene FALSE TRUE AT2G31390.1 pfkB-type carbohydrate kinase family protein Identical to Probable fructokinase-1 (EC 2.7.1.4) [Arabidopsis Thaliana] (GB:Q9SID0;GB:Q94F01); similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G06030.1); similar to putative fructokinase 2; S2 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ10000.1); similar to putative fructokinase 2; S1 self-incompatibility locus-linked 3.16 protein [Petunia integrifolia subsp. inflata] (GB:AAQ09999.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.229077599707286 2.80200537944298 0.0220532166704511 1 3.60811825732663 15.8364269383476 0.229077599707286 0.066493152873061
AT3G43810_at 9.14703773102576 9.08041879857274 9.1046105124172 9.11217328216996 9.10777073974173 8.50382673843774 9.08783299416659 9.01075543448296 8.82083481806167 8.621779484555 9.52904423256444 9.7270334158876 9.11664352512989 9.474816197852 9.89836002359255 9.05325463537484 8.82866868208317 9.19774427712222 8.56856585344824 0.105790985510228 0.0998284365915694 0.0998284365915694 0.107291052185792 0.104175125942509 0.107723202104437 0.106775729229941 0.105999062708546 0.108636231500761 0.107315497924832 0.105996685981756 0.101676797200426 0.103270323397907 0.0998284365915694 0.105601401993039 0.104184499041602 0.110844899666236 0.103640173388526 0.110872516720459 3 3 - 15675611 15677300 15675927.091 15675358 15677447 - gene protein_coding_gene FALSE TRUE AT3G43810.1 CAM7 (CALMODULIN 7); calcium ion binding EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.279193158487754 2.80186453337719 0.022058123534031 1 3.6079158922987 18.0310977834047 0.279193158487754 0.10599998430746
AT1G59900_at 10.7563673872160 10.8166369220282 10.9889557352954 10.8719952509367 11.0749307275439 10.9883444935550 10.6176157105231 10.6239473228993 10.4617600219565 10.6272384406580 10.6970065832377 10.5203340413088 10.5427167132601 10.5981737036131 10.6325321885844 10.6249253042912 10.5686681101353 10.6802819731260 10.3869447693478 0.0638372477484528 0.0599385730430505 0.0613414526004356 0.0636434117711697 0.0631507167538466 0.0634442500943813 0.0623391843326421 0.0651753818585187 0.0765183315412847 0.0615786945791673 0.0623835095697801 0.0605372900663799 0.0621656967476032 0.0643083282114694 0.064402264053981 0.0608954361887321 0.0699568587668933 0.0631046223484651 0.0626350025803452 1 1|0 +|/ 22055660 22057141 22056374.444 22054960 22057550 + gene protein_coding_gene FALSE TRUE AT1G59900.1 AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit); pyruvate dehydrogenase (acetyl-transferring) encodes the e1 alpha subunit of the pyruvate dehydrogenase complex (PDC) Identical to Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) [Arabidopsis Thaliana] (GB:P52901;GB:Q9C5E3;GB:Q9SXC2); similar to IAR4 (IAA-conjugate-resistant 4), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G24180.1); similar to pyruvate dehydrogenase E1 alpha subunit (GB:AAA86507.1); similar to Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial precursor (PDHE1-A) (GB:P52902); similar to pyruvate dehydrogenase [Citrus x paradisi] (GB:AAY86036.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) 0.196756733019962 2.80148398265526 0.022071386947601 1 3.60736912018714 21.3923796460074 0.196756733019962 0.0272798252794851
AT2G36160_at 10.0398051984641 10.4889117279937 9.84730589859717 9.85861858473112 10.0263351605675 10.1502097993784 10.0149298707422 10.4517650414927 9.96609866123382 9.73440732406383 9.80306736592295 9.8675605894737 9.63570785638794 9.68053868556507 10.0135982933661 9.40900802456747 8.78039524123433 9.36637541239755 9.88715015836644 0.117320361930993 0.113417515684915 0.122237513515066 0.123431651988446 0.115312439675693 0.118696780344437 0.112299311964519 0.111965824133685 0.125679740015720 0.115549186203997 0.113569442963766 0.111965824133685 0.121470109833219 0.116649697678087 0.113187759137343 0.114775240387693 0.138428710041795 0.121121799355643 0.111965824133685 2 2|0 +|/ 15177370 15177978 15177650 15176897 15178432 + gene protein_coding_gene FALSE TRUE AT2G36160.1 40S ribosomal protein S14 (RPS14A) Identical to 40S ribosomal protein S14-2 (RPS14B) [Arabidopsis Thaliana] (GB:Q9CAX6); Identical to 40S ribosomal protein S14-1 (RPS14A) [Arabidopsis Thaliana] (GB:Q9SIH0); similar to 40S ribosomal protein S14 (RPS14B) [Arabidopsis thaliana] (TAIR:AT3G11510.1); similar to cytoplasmic ribosomal protein S14 [Brassica napus] (GB:AAO41731.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) -0.285628106564135 -2.80119585869768 0.0220814344345808 1 3.60695514234138 19.8257769009971 -0.285628106564135 0.110537715792012
AT1G04985_at 8.54203172308749 8.38162675017307 8.62750190707017 8.58628252946676 8.93656511139673 8.52603504875554 9.08903932309886 8.92895329769891 8.38579674896906 8.64390705289083 7.77609994635441 7.9086331827959 8.12688621034855 8.13360193077147 7.92845826593319 8.65126583372572 8.5806319187092 7.94405810190525 8.64317253347803 0.140752867039836 0.135711261295256 0.137493747710903 0.135590041265037 0.133471225626214 0.145509228749837 0.134908053043141 0.133406684686922 0.143702227272607 0.13870157926018 0.143566244563195 0.138762155669461 0.136474582499845 0.141514505517179 0.142572714731039 0.139552340036773 0.141959725353187 0.142139453735165 0.138760665550499 1 1|0 -|/ 1416617 1418248 1417379.111 1416342 1418481 - gene protein_coding_gene FALSE TRUE AT1G04985.1 similar to OSJNBa0043A12.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE02812.1); similar to Os04g0669100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054200.1) -0.246368822818483 -2.80061377075972 0.0221017473817366 1 3.60611878586572 17.0466693958087 -0.246368822818483 0.0814628540938331
AT4G28030_at 9.41665957683823 9.55108792297858 9.31670650048603 9.2000108151904 9.3273928754609 9.19986408880638 9.56712914141298 9.6189684529845 9.66374735885489 9.76822904572616 9.58019604876383 9.71722826544896 9.49997693240782 9.64398957743238 9.68461797030732 10.0280126850302 9.343989212838 9.51503645451042 9.83866543538928 0.0995472224019431 0.0961756738575782 0.101499813531489 0.100021338991777 0.095858309293114 0.09892332628203 0.10055929680554 0.099947740066062 0.109333109403862 0.0994612053805724 0.0977107948787837 0.095858309293114 0.100691561974035 0.0966726927587529 0.101386154695150 0.0979768715139251 0.101297881682059 0.103791443943925 0.0982808066519667 4 4|0 -|/ 13937797 13938888 13938291.4 13937682 13939150 - gene protein_coding_gene FALSE TRUE AT4G28030.1|AT4G28030.2 GCN5-related N-acetyltransferase (GNAT) family protein|N-acetyltransferase similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G06025.1); similar to Os08g0260000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061388.1); similar to Predicted N-acetyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55572.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.203858711774361 -2.80008106682006 0.0221203537906627 1 3.60535337390658 19.0914831751026 -0.203858711774361 0.0389429785444241
AT4G09010_at 11.2689842663342 11.1329376569767 10.6388849352001 10.5504715467643 11.0449010186926 10.9148535452873 11.5190804709057 11.4024667177972 11.8217009321080 11.9731607104533 11.9630686014978 12.2999659789743 11.826770626197 11.947101011075 12.3200316878141 12.0258291502797 11.6249385014041 12.1861751213463 11.8796182997252 0.0737260475053818 0.0737260475053818 0.0753412969425914 0.0765459231801843 0.0795503037715727 0.0741531978054447 0.0756439843792111 0.0760570917641857 0.0870630602158301 0.0737260475053818 0.0786190765159507 0.074476454291332 0.0747418937348293 0.0785546057097451 0.0809690284816303 0.0739739800074267 0.0800362029988459 0.0749782718755418 0.07440006428387 4 4|0 -|/ 5777528 5778340 5777862.111 5777394 5779459 - gene protein_coding_gene FALSE TRUE AT4G09010.1 APX4 (ASCORBATE PEROXIDASE 4); peroxidase Encodes a microsomal ascorbate peroxidase APX4. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to Putative L-ascorbate peroxidase 4, chloroplast precursor (EC 1.11.1.11) (Thylakoid lumenal 29 kDa protein) (TL29) (P29) (AtAPx07) (APX4) [Arabidopsis Thaliana] (GB:P82281;GB:Q7XZP6;GB:Q9M0S6); similar to APX5, L-ascorbate peroxidase/ peroxidase [Arabidopsis thaliana] (TAIR:AT4G35970.1); similar to Putative L-ascorbate peroxidase, chloroplast precursor (Thylakoid lumenal 29 kDa protein) (TL29) (P29) (LeAPx09) (GB:Q9THX6); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.20542387289464 -2.7983454562946 0.0221810871511195 1 3.60285949828015 23.0169367192043 -0.20542387289464 0.0412570157904915
AT4G01040_at 7.84116562338903 8.29733297725167 7.44470355336122 7.806342766871 8.2262271921522 8.05996421801564 8.52452343267631 8.34934931344127 8.10993615358356 8.22172569845123 8.37454261234134 8.24977751535148 7.76158917183956 7.96418647929638 8.16228346286777 8.03096231251515 7.79030752656035 8.04572362785676 8.40287219810818 0.180870661450462 0.176893761954888 0.193054030519888 0.180781807531023 0.178963757013132 0.195855614815682 0.178820020477010 0.181823945127207 0.187121457222265 0.180655826665209 0.186080020851607 0.182642164407104 0.179152970106018 0.198534640770998 0.177822299747713 0.185625974130596 0.191429386542092 0.182698274530362 0.176893761954888 4 4 + 454719 455330 455068.182 453369 455548 + gene protein_coding_gene FALSE TRUE AT4G01040.1 glycosyl hydrolase family 18 protein similar to MGC84097 protein [Xenopus laevis] (GB:AAH80071.1); similar to Os01g0619800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043596.1); contains InterPro domain Chitinase II; (InterPro:IPR011583) -0.283103249445974 -2.79721927963615 0.0222205863754777 1 3.60124124846963 16.2148342706246 -0.283103249445974 0.109065760781125
AT1G04480_at 9.45150563660302 9.55754394497732 9.25435248156335 9.29607721948422 9.68564844204707 9.23014358516872 9.68631173581335 9.54288538711817 9.03710604854033 8.81591674986677 8.71293888427766 8.9107318790593 8.5530237501404 8.67178185678452 8.98697438097866 8.63718311769935 7.99492106232434 8.49586968621856 8.93162292267278 0.132364657468116 0.133930602852138 0.139550432455316 0.137957115800611 0.140868599471698 0.138396812837082 0.141786374613809 0.135925251781983 0.138683468315174 0.134105000094255 0.137324414318106 0.132093090672041 0.130458921075936 0.134115704924795 0.138507681067126 0.131821712586061 0.149866509850034 0.135894215654570 0.130458921075936 1 0|1 /|+ 1216293 1217227 1216622.5 1216094 1217458 + gene protein_coding_gene FALSE TRUE AT1G04480.1 60S ribosomal protein L23 (RPL23A) Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to EMB2171 (EMBRYO DEFECTIVE 2171), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04400.1); similar to 60S ribosomal protein L23 (RPL23B) [Arabidopsis thaliana] (TAIR:AT2G33370.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) -0.250396703618369 -2.79671773612640 0.0222382005954405 1 3.60052054435571 18.2373802128696 -0.250396703618369 0.0849627674349419
AT1G20110_at 10.1322914772805 10.1780816968367 10.3656721212458 10.4453737920852 10.2828097966635 10.2739477917472 9.75564201166511 9.84070773054013 10.0986964895138 9.99898215222032 10.1580723609476 10.0115224059485 9.95383238231532 10.1445920267991 9.8249480445566 10.1050944913916 9.92976499580735 10.1657212874688 9.94582392702538 0.0873568293448883 0.0864889692301548 0.0935668387870043 0.0890550126597783 0.0908748778548365 0.0924500319927118 0.0915515401182292 0.0874427042440785 0.0969506030450535 0.085021837839653 0.0862205499419857 0.0833215880229895 0.0858538602929238 0.0857842317313042 0.092584155445899 0.0833511336020922 0.0935008587394305 0.0907823727377965 0.0864946540399609 1 1|0 +|/ 6973043 6974525 6973824.111 6971476 6974826 + gene protein_coding_gene FALSE TRUE AT1G20110.1 zinc finger (FYVE type) family protein similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT1G23720.1); similar to proline-rich extensin-like family protein [Arabidopsis thaliana] (TAIR:AT3G28550.1); similar to hypothetical protein [Phoenix dactylifera] (GB:CAA61964.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.193731394753005 2.795369618329 0.0222856175453354 1 3.59858328936627 20.1849129800868 0.193731394753005 0.0217277089019491
AT2G38120_at 7.73518783019001 7.883541358887 6.29370903826562 6.42365692727874 7.18712533459047 7.4368703723522 7.45852075872853 8.00511926280719 8.02447881060544 7.26110358352272 8.04984635739918 8.32938320324944 8.4844851219031 7.92856602363225 8.67666454024183 8.52524517781741 7.48957684547609 7.6887930704239 8.04905608123125 0.175767015006953 0.166461897145672 0.181391734687585 0.185922651935237 0.164879911779783 0.172337040592461 0.159942169341933 0.162648071263177 0.165617262665071 0.170734780628322 0.168145879367390 0.171579079447587 0.163767570078840 0.168523116941653 0.178054127490572 0.159446799882353 0.175460001645961 0.162885845007893 0.162122578144493 2 2 + 15982505 15983787 15982979.545 15980071 15984258 + gene protein_coding_gene FALSE TRUE AT2G38120.1 AUX1 (AUXIN RESISTANT 1); amino acid permease/ transporter Encodes an auxin influx transporter. AUX1 resides at the apical plasma membrane of protophloem cells and at highly dynamic subpopulations of Golgi apparatus and endosomes in all cell types. Identical to Auxin transporter protein 1 (Auxin influx carrier protein 1) (Polar auxin transport inhibitor-resistant protein 1) (AUX1) [Arabidopsis Thaliana] (GB:Q96247); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT2G21050.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT5G01240.1); similar to amino acid permease, putative [Arabidopsis thaliana] (TAIR:AT1G77690.1); similar to AUX1-like auxin influx carrier protein [Pisum sativum] (GB:BAC98948.1); similar to Auxin transporter-like protein 2 (AUX1-like protein 2) (MtLAX2) (GB:Q9FEL7); similar to putative auxin influx carrier protein [Prunus avium] (GB:CAI05895.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.283447333566663 -2.79510436079188 0.0222949595733466 1 3.59820210432116 15.2653577942063 -0.283447333566663 0.109454541513671
AT4G32280_at 6.69826392646665 6.90053926709718 3.20705606521873 3.02671647979485 6.15410416999192 4.82526802791696 3.89265076876646 3.35251444719662 9.69311406914994 7.81586970075526 9.78510026036584 10.1123531510210 9.1900805077215 8.47233163914188 10.0889564172147 9.03617596449818 6.89821920284203 8.28783876822889 9.85438031996795 0.242877382526021 0.235021600981635 0.252185507037668 0.249891235955494 0.236344666331319 0.243500398460371 0.232623120380942 0.243698836753695 0.231904607647706 0.238434186704573 0.229449692295307 0.233625208171340 0.229449692295307 0.230254979176024 0.235769274653254 0.229449692295307 0.253720030864946 0.239579607352804 0.229449692295307 4 4 + 15583673 15584597 15584173.909 15583393 15584775 + gene protein_coding_gene FALSE TRUE AT4G32280.1 IAA29 (indoleacetic acid-induced protein 29); transcription factor Auxin inducible protein. Identical to Auxin-responsive protein IAA29 (Indoleacetic acid-induced protein 29) (IAA29) [Arabidopsis Thaliana] (GB:Q93WC4;GB:O49363); similar to IAA16 (indoleacetic acid-induced protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT3G04730.1); similar to AUX/IAA protein [Medicago truncatula] (GB:ABE81770.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.522472645531449 -2.79389765911797 0.0223375087720570 1 3.59646799543706 13.8096408201413 -0.522472645531449 0.252623679514783
AT4G26870_at 8.30151264829891 8.36342059504397 8.05883620127265 7.94109872703785 8.43939243610169 7.99275981518798 7.9727929629905 7.77160355330638 7.83308461328745 7.62106634974803 7.34780418704957 7.34989682385489 7.34427622499558 7.19173940068732 7.57038877699779 7.38473189112665 7.03429437969667 7.48959237963118 8.1021168216936 0.176728617822768 0.183119955547454 0.183793987010532 0.180624854733035 0.180796338624931 0.190757896196004 0.179822469217423 0.181767667638634 0.199757695663212 0.183667133123188 0.191252331479667 0.174711476571539 0.1794211387214 0.185417252376024 0.188343611208365 0.177253361343757 0.197859776218942 0.186368052195469 0.17869176481471 4 0|4 /|+ 13506723 13507596 13507328.5 13505337 13507876 + gene protein_coding_gene FALSE TRUE AT4G26870.1 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G31180.2); similar to Os02g0686400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047770.1); similar to Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) [Medicago truncatula] (GB:ABE93908.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aspartyl-tRNA synthetase archea/euk type; (InterPro:IPR004523); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) -0.253654699290652 -2.79214539356488 0.0223994432807751 1 3.5939497792525 15.7007670021956 -0.253654699290652 0.0878416649141959
AT1G76860_at 6.33771677298189 6.63977647650429 5.9993812295048 6.50925214525863 6.59126645719893 6.12864353591336 6.23537042588976 6.42037948923149 6.31774966920171 6.12936902436145 5.84962526017221 5.7296206893893 5.65265659287908 6.02118595287439 5.92351533932663 5.79911372221143 5.78714326522661 5.59653974826665 6.55355114381326 0.179720356964808 0.171463108241092 0.169787805721649 0.169066160085497 0.168198333875660 0.169954764607200 0.166088679149270 0.170546675834041 0.184692458108353 0.170010293256843 0.188922365612752 0.172591268813093 0.170581578504751 0.166651421661875 0.176029483117661 0.176092287872616 0.176966346032012 0.183395257428619 0.174430381084684 1 1|0 -|/ 28859488 28860495 28860225.3 28859308 28860644 - gene protein_coding_gene FALSE TRUE AT1G76860.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G21190.1); similar to LSM Sm-like protein family member [Bombyx mori] (GB:NP_001040418.1); similar to Os01g0866700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044909.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.319903245174223 -2.7920430915099 0.0224030646230768 1 3.59380275539468 12.4219641584364 -0.319903245174223 0.133986866431865
AT1G19860_at 7.48307026628429 7.51823662450119 7.78322822469586 7.93406896561648 7.75765767298042 7.60622051231569 7.98946875787145 8.13492690085173 6.93084074494605 6.70257535411264 7.21756493536572 7.33021545765206 7.4348812057208 7.07710546424034 6.6819359969863 7.42777022421955 7.8431555835153 7.09954749707599 6.87791597187407 0.202897392436198 0.201260546736018 0.203154812056865 0.203393409158751 0.203012159340011 0.204725665829852 0.200134316470681 0.196675060801176 0.208132580132822 0.204600857625593 0.203083446671192 0.200083558632215 0.208095507246616 0.203220661445718 0.201736192563625 0.196675060801176 0.208618568519447 0.208062275019734 0.208002990336842 1 1 - 6891710 6892132 6891933.636 6891420 6894727 - gene protein_coding_gene FALSE TRUE AT1G19860.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51180.1); similar to hypothetical protein [Prunus persica] (GB:AAO14624.2); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.207889780905515 2.79071713694118 0.0224500558214173 1 3.59189711900030 14.8264261085936 0.207889780905515 0.0451539668945227
AT2G45270_at 7.78019908729502 7.644704801442 7.13944324534947 7.18478503093094 7.52847693799004 7.32319234391621 8.41543590138882 7.41814001748616 7.00545872174778 6.99856459771936 6.38632989339969 6.57044622489992 6.1613397226064 6.54732015485297 7.41016017268324 7.01300479246554 6.88057411085923 7.00125396393243 7.02005821189358 0.226255170633002 0.217590300465922 0.218515068842623 0.21421150376475 0.222313447080405 0.242355101575499 0.218179290160597 0.223086520579342 0.217871581362512 0.21421150376475 0.219807009675932 0.215143267327044 0.221019051887058 0.232022850139869 0.21528107642947 0.217285398274 0.228877231211705 0.221788709470895 0.220293205340592 2 0|2 /|+ 18675582 18676347 18676017.1 18673600 18676947 + gene protein_coding_gene FALSE TRUE AT2G45270.1 glycoprotease M22 family protein similar to glycoprotease M22 family protein [Arabidopsis thaliana] (TAIR:AT4G22720.2); similar to Glycoprotease family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98521.1); contains InterPro domain Peptidase M22, glycoprotease; (InterPro:IPR000905) -0.391184555007074 -2.79021955272503 0.0224677160393638 1 3.59118198391117 14.4314625740162 -0.391184555007074 0.177931454584735
AT2G46390_at 9.23964022391118 9.29464535332701 9.49809293446085 9.60231070899746 9.35032793249048 8.99851272627421 8.73811480613365 9.06125140824385 8.52686560648473 8.72046216464223 8.7778834360478 9.07740422178227 8.822230991538 8.8857269699614 8.7304007441235 9.07144984908545 8.74789359657995 8.84274583606713 8.69785609694615 0.140364036665448 0.139664467502858 0.134947326275270 0.138699800378557 0.138639064177342 0.135709996433175 0.134518922102506 0.136369686178757 0.144609654112973 0.137498128632159 0.138920833361534 0.130280707259672 0.130280707259672 0.132405528244802 0.140710512471043 0.130812240359065 0.144268284911279 0.137940841092311 0.139804565262544 2 2|0 -|/ 19049539 19050065 19049923.667 19049374 19050133 - gene protein_coding_gene FALSE TRUE AT2G46390.1 unknown protein 0.249985230304489 2.78954910451456 0.0224915340621453 1 3.59021839195633 17.9817928008994 0.249985230304489 0.0851453763700992
AT3G51420_at 9.65330927620927 10.2799154018658 10.0617580332468 10.0136575524938 10.3173029195909 10.0850473699453 10.6318333315969 10.8568466636944 10.7063007342998 10.7236511167646 10.2603159368916 10.2973955330774 10.5513159032598 10.4697197224460 10.1209483901882 10.7818214380626 9.60743422733606 10.5055728733221 10.6451481082706 0.117503705351794 0.111685973001821 0.110825429081403 0.12099702943161 0.11655199249832 0.123009387734071 0.116120098836431 0.114224144103866 0.117233524621050 0.109682001424388 0.114657000728854 0.113628978715089 0.110814375217490 0.114699592804048 0.114388099733236 0.109682001424388 0.127822678759047 0.114736120801938 0.111674052415360 3 3 + 19095748 19096395 19096161.545 19095014 19096837 + gene protein_coding_gene FALSE TRUE AT3G51420.1 strictosidine synthase family protein similar to YLS2 (yellow-leaf-specific gene 2), strictosidine synthase [Arabidopsis thaliana] (TAIR:AT3G51430.1); similar to mucin-like protein [Oryza sativa] (GB:AAG13594.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.301709591447211 -2.78900180873567 0.022510996222572 1 3.58943178692993 20.7454665633394 -0.301709591447211 0.122309685589761
AT1G44000_at 10.5306369207584 10.6917296632119 10.6150832665389 10.4894182553101 10.8517667584607 10.4110650222765 11.7591041313029 11.623874209066 11.7839470206502 11.6421611336449 12.0088092902591 12.0242271258396 11.4519067442695 11.8472274215326 11.8127571886667 11.8364045607253 11.1886331804982 11.5614214278593 11.5600112936467 0.0895135522072824 0.08640668598354 0.0885932231943181 0.0866851911911059 0.0885596812504279 0.0914931118770572 0.0913427630587749 0.0860810451491566 0.0935715085013342 0.0895128433470787 0.0860810451491566 0.0860810451491566 0.090786971132401 0.0899761936664015 0.0922008923875085 0.0860810451491566 0.0895926734145488 0.0890320817489712 0.0893755436622323 1 1 - 16710644 16711383 16710951 16710508 16712153 - gene protein_coding_gene FALSE TRUE AT1G44000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22920.1); similar to senescence-inducible chloroplast stay-green protein 2 [Glycine max] (GB:AAW82960.1) -0.252559676981286 -2.78830712309273 0.0225357245243717 1 3.58843332907183 22.5608163700841 -0.252559676981286 0.0872593232679246
AT1G74340_at 7.64555348534701 8.27530360006044 8.28709714088982 8.14586612961911 8.31068523244273 7.7481211098389 8.01731819992926 7.91017699259449 7.12502797764245 7.27849388532842 7.5598581258808 8.08471110884336 7.69164629561616 7.68159871699663 7.8451597091407 7.83669826542859 7.60075329049312 7.60934188090896 7.2339115912089 0.183711941168624 0.180351697227221 0.186773402531092 0.185160559730576 0.189510282550278 0.192582484646222 0.180781074738928 0.186213172320738 0.213010963515770 0.190986711531018 0.185930140273845 0.185327975503778 0.196138008180366 0.18976666694808 0.185284444939897 0.185914659478003 0.212072394163933 0.190462923918844 0.185303680991212 1 1|0 -|/ 27951973 27952285 27952127.222 27951784 27952332 - gene protein_coding_gene FALSE TRUE AT1G74340.1 dolichol phosphate-mannose biosynthesis regulatory protein-related similar to putative dolichol-phosphate (beta-D) mannosyltransferase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD10255.1); contains InterPro domain Dolichol phosphate-mannose biosynthesis regulatory; (InterPro:IPR009914) 0.34354871990923 2.78688633444062 0.0225863862380134 1 3.58639120363923 15.5181146074519 0.34354871990923 0.149318102069609
AT1G68410_at 5.07657205193717 4.84464825172266 5.33330247322415 5.44885742583714 5.47003935429339 4.91717398143467 5.77162707567441 5.73589199204037 5.47280625810315 5.58082247358610 6.81192528270412 6.12814281644356 6.37445356761442 6.35355907169102 6.3602193095415 6.1073511534958 5.59538063833527 5.98223685348109 5.72984922885068 0.169253224906691 0.176813646180315 0.166050938647462 0.166331821751126 0.162627573542525 0.179816538840548 0.167539943288295 0.167779834716623 0.179103715643419 0.168875856189227 0.165422850250370 0.167246568709913 0.163064298246974 0.183441124447903 0.164595698355429 0.160800843740097 0.169320887399352 0.173720940652081 0.165134128767343 1 1 - 25653989 25654613 25654290.273 25653662 25656682 - gene protein_coding_gene FALSE TRUE AT1G68410.1|AT1G68410.2 protein phosphatase 2C-related / PP2C-related|protein phosphatase type 2C similar to protein phosphatase 2C-related / PP2C-related [Arabidopsis thaliana] (TAIR:AT1G09160.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE85667.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.277412199501859 2.78620534470747 0.0226107099813396 1 3.58541237902831 11.2290896958588 0.277412199501859 0.105843649409590
AT1G10510_at 6.77685535747013 6.53528487316202 6.62390723819645 6.47669540624141 6.62020598690534 6.32036110310625 7.40154801514443 7.22821879360837 6.55069377554318 6.92667201578066 6.53808988889533 7.2248900668332 6.58353406035712 6.6939434735973 7.0254529729918 6.9226722990938 6.6145382766574 6.07765666994285 6.66795450652643 0.171510706552492 0.168659621785229 0.175531506886156 0.181354424411803 0.174859886827673 0.180180656965499 0.172341807168787 0.183584355991142 0.172751569712194 0.172771921437873 0.174160038658462 0.174505894301101 0.176580002640335 0.174339550401312 0.171638423922283 0.176059808878086 0.183235898880704 0.181848176477841 0.172815164088060 1 0|1 /|+ 3464790 3465524 3465145.222 3461636 3465787 + gene protein_coding_gene FALSE TRUE AT1G10510.1 EMB2004 (EMBRYO DEFECTIVE 2004); protein binding similar to RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1), RAN GTPase activator [Arabidopsis thaliana] (TAIR:AT3G63130.1); similar to deliriumA-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37894.1); contains InterPro domain Leucine-rich repeat, ribonuclease inhibitor type; (InterPro:IPR007091); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.240096939318930 -2.78535681718362 0.0226410554575827 1 3.58419271985857 13.4604865864774 -0.240096939318930 0.077388063499988
AT4G28470_at 8.06362043856419 8.01552842313486 7.81915453504105 7.71216978342254 7.49829938785244 7.8167305665944 7.92613203724108 7.8344666606502 8.21808386180178 8.03690526650238 7.89407075204077 8.21951957604955 7.63049060186975 8.0678705154838 8.02628076792284 7.87817560591265 7.43917958652651 7.67092051472993 7.89059660182601 0.141730336385673 0.141730336385673 0.157597046823628 0.141730336385673 0.153409606957869 0.148942640119989 0.146707162826186 0.143822857947622 0.147594797038422 0.146595210831388 0.147651340382052 0.141730336385673 0.145326357227336 0.141730336385673 0.155703929493865 0.150464385671947 0.175097692522073 0.144206502473537 0.156744903615349 4 4 - 14066911 14067400 14067189.429 14066882 14072549 - gene protein_coding_gene FALSE TRUE AT4G28470.1 AtRPN1b/RPN1B (26S proteasome regulatory subunit S2 1B); binding encoding the RPN subunits of the 26S proteasome similar to AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A), binding [Arabidopsis thaliana] (TAIR:AT2G20580.1); similar to putative 26S proteasome regulatory subunit S2 [Oryza sativa (japonica cultivar-group)] (GB:BAD54002.1); similar to Proteasome/cyclosome, regulatory subunit [Medicago truncatula] (GB:ABE89010.1); similar to 26S proteasome regulatory complex, subunit RPN2/PSMD1 (ISS) [Ostreococcus tauri] (GB:CAL55270.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) -0.221781704156528 -2.78524834798782 0.0226449375970083 1 3.58403680621981 15.7866837624511 -0.221781704156528 0.060830507840475
AT2G29980_at 10.1906273204919 10.2043619592168 7.50753347520668 7.5693749159132 8.91017920718949 8.73034392733123 7.86400177020922 8.42861912026828 10.3262419516892 9.54103028035915 10.9438949966272 11.1232082283886 10.2869726861760 10.4485559939676 11.2305708908780 10.1688402522148 8.9060795594486 10.0983799580970 9.99760108880012 0.152135662512402 0.153577802725558 0.187388166361826 0.174089458282209 0.152584521891356 0.163680754744215 0.170187198750577 0.163850883513021 0.153273960276477 0.152135662512402 0.157683910935199 0.157881653875416 0.159679313286289 0.157396848861375 0.158263755152084 0.156555815512768 0.159519607352845 0.152135662512402 0.155804880713221 2 2|0 -|/ 12788882 12789685 12789240.111 12788668 12792130 - gene protein_coding_gene FALSE TRUE AT2G29980.1|AT2G29980.2 FAD3 (FATTY ACID DESATURASE 3); omega-3 fatty acid desaturase Endoplasmic reticulum enzyme responsible for the synthesis of 18:3 fatty acids from phospholipids. Uses cytochrome b5 as electron donor. Identical to Omega-3 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) (FAD3) [Arabidopsis Thaliana] (GB:P48623); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to Omega-3 fatty acid desaturase, endoplasmic reticulum (GB:P48624); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91879.1); similar to omega-3 fatty acid desaturase [Brassica napus] (GB:AAT09135.1); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261)|Identical to Omega-3 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) (FAD3) [Arabidopsis Thaliana] (GB:P48623); similar to FAD8 (FATTY ACID DESATURASE 8), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT5G05580.1); similar to omega-3 fatty acid desaturase [Descurainia sophia] (GB:ABK91879.1); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261) -0.273344807013914 -2.78352368561587 0.0227067554497209 1 3.58155772040013 18.8535155091488 -0.273344807013914 0.103130486792523
AT1G20090_at 7.85099719170708 8.01884971215759 8.18647223919316 8.28367733986481 8.99776990818417 8.60712488158398 8.64913110522887 8.77173456673204 9.12154412429481 8.22628786905153 9.51492111957322 8.9057826428929 9.09972307265399 9.2721205648238 8.84418628878591 8.51019929544174 8.47278648580624 8.7788934942995 8.56824999961 0.127331766960759 0.122778935344127 0.125277011117662 0.124938989010632 0.124325494464854 0.137257308748382 0.123293949451153 0.12413609036758 0.135345031869798 0.123806437127031 0.127403950044310 0.121020716063532 0.131609424330308 0.129448757109579 0.129835591739720 0.120343993856278 0.132046046338565 0.120880822865211 0.120862579865269 1 1|0 +|/ 6967236 6968348 6967804.1 6966913 6968924 + gene protein_coding_gene FALSE TRUE AT1G20090.1 ARAC4/ATRAC4/ATROP2/ROP2 (rho-related protein from plants 2); GTP binding Member of the Rho GTPase family. Functions to organize the microtubular cytoskeleton in combination with RIC1 and RIC4. These interactions affect pavement cell morphogenesis and pollen tube growth. ROP2 expression is stimulated by brassinosteroid treatment (PMID 16141452). Identical to Rac-like GTP-binding protein ARAC4 (GTPase protein ROP2) (ARAC4) [Arabidopsis Thaliana] (GB:Q38919); similar to AT1G75840.1/ATGP3/ATROP4 (RHO-LIKE GTP BINDING PROTEIN 4), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G75840.1); similar to Rac-like GTP-binding protein 5 (OsRac5) (GTPase protein RacD) (GB:Q6EP31); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.241107785566341 2.78301447895509 0.0227250402297789 1 3.58082575016941 17.2024799271749 0.241107785566341 0.0784032067577212
AT3G56090_at 6.23641614106279 6.90476200865285 5.54739610999009 5.98139592650404 4.66590003701724 4.97263375755674 7.55933040018855 7.19339090999997 4.15507256329246 4.53290879642233 4.80554353549891 6.0111695939669 4.70255521878205 4.73626167102676 6.43232015337812 4.95506049322004 5.71779152035047 4.89151478796008 4.27983381128603 0.212506622570085 0.210065229138219 0.215521541459461 0.213383216613746 0.213032378208532 0.230933612135227 0.207803856541149 0.217350673005756 0.208934234370111 0.217574826463080 0.206370926115565 0.215728873303246 0.208783579974758 0.212296371286537 0.210496569474564 0.206370926115565 0.217063283944861 0.206370926115565 0.207031818070232 3 3|0 -|/ 20825344 20826703 20826226.444 20825026 20827014 - gene protein_coding_gene FALSE TRUE AT3G56090.1 ATFER3 (FERRITIN 3); ferric iron binding Identical to Ferritin-3, chloroplast precursor (EC 1.16.3.1) (FER3) [Arabidopsis Thaliana] (GB:Q9LYN2;GB:Q8WHW6); similar to ATFER4 (FERRITIN 4), ferric iron binding [Arabidopsis thaliana] (TAIR:AT2G40300.1); similar to ferritin [Chorispora bungeana] (GB:ABB22752.1); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin; (InterPro:IPR001519); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Ferritin-like; (InterPro:IPR009040); contains InterPro domain Ferritin and Dps; (InterPro:IPR008331) -0.361360671218184 -2.78075928038147 0.0228062023328591 1 3.57758385708446 10.9347192507581 -0.361360671218184 0.160767626693851
AT3G07568_at 8.61371315175553 8.57453999989684 8.60237450557867 8.44494572192717 8.25938622740561 7.94378877892365 8.86140808557809 8.8945457859907 7.12325663788189 7.4910465863951 8.28434659831972 8.73882832950233 8.04593734581788 7.96084489317548 8.43699311872315 7.93957167197207 7.91523937254456 8.17534377579166 7.34323073454746 0.297164146050321 0.261650214828102 0.261650214828102 0.261650214828102 0.284788334791585 0.275283036586681 0.261650214828102 0.261650214828102 0.287955986083505 0.292731067470198 0.269625028366097 0.265171720141017 0.278317601111441 0.291505015439048 0.261650214828102 0.274933687370639 0.305307927618010 0.261650214828102 0.272887560818354 3 3|0 -|/ 2417645 2417686 2417665.333 2416249 2417796 - gene protein_coding_gene FALSE TRUE AT3G07568.1 unknown protein 0.222266102304763 2.78053651151557 0.0228142356437960 1 3.5772636128174 16.2774958443849 0.222266102304763 0.0616760156038267
AT1G68140_at 8.10698281479512 8.2156282256439 8.45057225407957 8.57583129892424 8.82327143173237 8.80290840953072 7.43111002880636 7.92449622747427 7.7179513810476 7.45239113251534 7.3245139333634 7.19823708581043 7.91638864316204 7.51329732551326 6.77161925588585 7.65510782960284 7.4916593171798 7.3225567066088 7.72492133761172 0.156287406961585 0.156892595376449 0.156924471937798 0.156403170668579 0.157896341486723 0.166030991807367 0.157049549536934 0.159883265743813 0.157044883275063 0.160838224309756 0.159286899845464 0.156910880087065 0.157705839180747 0.160155597327371 0.164842553051812 0.153452713459652 0.156490099791807 0.167799741207524 0.160774631135522 1 1 - 25543124 25543604 25543405 25542650 25545374 - gene protein_coding_gene FALSE TRUE AT1G68140.1|AT1G68140.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77770.2); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.255504709734702 2.77982947162398 0.0228397515589822 1 3.57624718715162 15.8068136509728 0.255504709734702 0.0901444131342061
AT1G78490_at 6.7232201633428 7.06818149312074 5.72603204130764 6.13101521687843 6.58274868405552 5.27490331925989 6.63577921759371 5.75194302316483 4.10529553557931 6.02038765969265 7.97363153375397 7.89359021771903 6.63757327354357 8.38264642290584 7.94634442382297 7.95118241131192 6.32998658469059 7.6143502338739 7.29576036849418 0.253522147732253 0.246193969514628 0.257332705116566 0.253954562822654 0.248640365598812 0.252626157320901 0.252697479247606 0.252141070305429 0.260560489472887 0.247098408232371 0.246193969514628 0.252338955910897 0.246193969514628 0.255507964849632 0.25477383903961 0.246193969514628 0.253901979134469 0.262728315435411 0.255803910689137 1 1 + 29534357 29535253 29534964.182 29533146 29535558 + gene protein_coding_gene FALSE TRUE AT1G78490.1 CYP708A3 (cytochrome P450, family 708, subfamily A, polypeptide 3); oxygen binding member of CYP708A similar to CYP708A2 (cytochrome P450, family 708, subfamily A, polypeptide 2) [Arabidopsis thaliana] (TAIR:AT5G48000.5); similar to E-class P450, group I [Medicago truncatula] (GB:ABE90564.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.58395456209193 2.77914114733515 0.0228646201535687 1 3.57525765016379 12.9358833909862 0.58395456209193 0.288261263403286
AT1G02305_at 10.6099763505731 10.9651585353874 11.1970799182740 11.3121284029915 11.3851694616360 11.0879373207208 10.5673609454836 10.6689186289690 10.1072846166419 10.4957793441587 10.1721717715798 10.0914097881305 10.3582000487449 10.2240344446921 10.1948767054303 10.4370295697913 10.1974123544195 10.3066288370647 10.2794473270147 0.092934768785665 0.0852808087758456 0.0892275819308051 0.0883191977861067 0.0852808087758456 0.0936040464509776 0.085596568612875 0.0880098863274535 0.103236251703040 0.087470201012409 0.0877355901319009 0.0865912969863841 0.0873141911075897 0.092828008370488 0.0917510557939101 0.0852808087758456 0.098905585990588 0.0877424944403432 0.0866116693314469 1 1|0 +|/ 457043 457902 457288 455688 458124 + gene protein_coding_gene FALSE TRUE AT1G02305.1 cathepsin B-like cysteine protease, putative similar to cathepsin B-like cysteine protease, putative [Arabidopsis thaliana] (TAIR:AT1G02300.1); similar to Peptidase C1A, papain; Somatotropin hormone [Medicago truncatula] (GB:ABD32840.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Peptidase C1, propeptide; (InterPro:IPR012599); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.248137585756077 2.77888532846368 0.022873869751875 1 3.57488988008456 21.2451616301311 0.248137585756077 0.0844342637472355
AT2G46330_at 10.0790996305299 10.5976440349890 10.246086763602 10.2861594485501 10.4081616567723 10.1522770251850 9.383010010967 9.72501548270539 11.6013205642133 10.3673658815771 12.2866932824737 11.7938453335406 11.4095988284561 11.7726877045576 11.4779171732974 10.9614258336465 9.42448098299574 11.0980881615941 11.0948618907957 0.0961885364010192 0.08625719935373 0.0896821910011985 0.0922318969788575 0.0865705508076668 0.089746982698458 0.0910127041134326 0.091350193594935 0.102183337735328 0.0889470403506693 0.0883090179414172 0.0883415839630279 0.0884566525997805 0.0888604097854548 0.0897704144181178 0.08625719935373 0.115939271054493 0.0935922764389427 0.0868511981004304 2 2 - 19025830 19026134 19025998.364 19025581 19026328 - gene protein_coding_gene FALSE TRUE AT2G46330.1|AT2G46330.2 AGP16 (ARABINOGALACTAN PROTEIN 16) Encodes arabinogalactan protein (AGP16). Identical to Arabinogalactan peptide 16 precursor (AG-peptide 16) (AGP16) [Arabidopsis Thaliana] (GB:O82337); similar to AGP20 (ARABINOGALACTAN PROTEIN 20) [Arabidopsis thaliana] (TAIR:AT3G61640.1); similar to unknown [Capsicum annuum] (GB:AAM12785.1); similar to Os05g0217000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054936.1); similar to Os01g0657000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043758.1); contains InterPro domain Protein of unknown function DUF1070; (InterPro:IPR009424)|Identical to Arabinogalactan peptide 16 precursor (AG-peptide 16) (AGP16) [Arabidopsis Thaliana] (GB:O82337); similar to AGP20 (ARABINOGALACTAN PROTEIN 20) [Arabidopsis thaliana] (TAIR:AT3G61640.1); contains InterPro domain Protein of unknown function DUF1070; (InterPro:IPR009424) 0.291944158718827 2.77876159720251 0.0228783448572121 1 3.57471200086701 21.2593192273787 0.291944158718827 0.116467049601314
AT4G37510_at 9.84024146710964 9.86606653657488 9.57884764342384 9.4215045683503 9.58916988017108 9.45899574233179 9.72881045367729 9.64994895942569 9.7211645870025 9.54880350419036 9.07127436599551 9.75987298341189 9.43045487076095 9.42904029759005 9.81869580677754 9.6555989336889 9.60795158017138 9.2159036380715 9.65799854157505 0.117496025727983 0.114707498373681 0.117729512552566 0.118911911744551 0.114253382753349 0.112958758761423 0.110932143061212 0.115583818012011 0.111655969064155 0.115683111509917 0.125695361624869 0.114222284433829 0.113956168380563 0.110932143061212 0.116040704308613 0.118096270486078 0.123233943816088 0.128903931509591 0.111390701668991 4 4|0 -|/ 17626344 17626996 17626786 17626098 17628941 - gene protein_coding_gene FALSE TRUE AT4G37510.1 ribonuclease III family protein similar to Ribonuclease III [Medicago truncatula] (GB:ABE82532.1); similar to Os01g0810100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044581.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) -0.201596940162565 -2.77668920102906 0.0229534326656018 1 3.57173259400024 19.2123254582903 -0.201596940162565 0.0381459818503352
AT2G31740_at 6.3493422307517 6.920177853234 6.08314537219194 7.07615213723232 6.62675455743278 5.78572791156721 6.13748590051678 6.51700569782204 6.44319877368357 5.97144322207541 5.03881853628883 5.56183150036433 5.67161829344186 5.69875453315491 4.7230656370116 5.69302436062109 4.68682985312074 5.58587582588276 6.45391665837234 0.250915536842698 0.249035559041343 0.260598886902092 0.261482801269291 0.254285755831682 0.263529104543955 0.258790546859307 0.25401837165983 0.257875881382091 0.250502065252722 0.249035559041343 0.249035559041343 0.257270482512700 0.249285487172217 0.257299369746384 0.249035559041343 0.263073808954454 0.249035559041343 0.252394121884249 2 2|0 -|/ 13498247 13499019 13498546.8 13497985 13502187 - gene protein_coding_gene FALSE TRUE AT2G31740.1 similar to spermidine synthase-related / putrescine aminopropyltransferase-related [Arabidopsis thaliana] (TAIR:AT5G04610.1); similar to putative spermine/spermidine synthase [Medicago truncatula] (GB:ABE91499.1); similar to Os04g0379300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052588.1); similar to putative spermine/spermidine synthase [Glycine max] (GB:AAQ62585.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.522550079933205 -2.77609454632645 0.0229750250001639 1 3.57087765429406 12.2479723920250 -0.522550079933205 0.254530223153761
AT1G79810_at 6.62175345024442 6.76138498336212 7.30317728146753 7.25996165309896 7.39613930384882 7.07285174880076 7.4285888863936 7.05162006416826 5.72017357706741 6.1032573478263 6.31095058816859 6.36064047474914 6.31266630633454 6.28420675121389 6.48737417374116 6.66857336814897 6.16542544671097 6.18689513752209 6.5678487606523 0.178845932908649 0.178041878146593 0.178722586862205 0.176659105276313 0.179048065141932 0.182076774011276 0.180787126424673 0.182334922114638 0.193531371553831 0.189279167623110 0.177911117931670 0.176659105276313 0.183172564134265 0.181657827026761 0.188616326076335 0.177493450930540 0.191397077302931 0.185367565195658 0.179359694798807 1 1 + 30025462 30026997 30026181.909 30024637 30027379 + gene protein_coding_gene FALSE TRUE AT1G79810.1|AT1G79810.2 TED3 (REVERSAL OF THE DET PHENOTYPE); protein binding / zinc ion binding Dominant suppressor of det1 phenotypes. Encodes a peroxisomal protein essential for Arabidopsis growth. Inserted directly from the cytosol into peroxisomes. Identical to Peroxisome assembly protein 2 (Peroxin-2) (AthPEX2) (Pex2p) (PEX2) [Arabidopsis Thaliana] (GB:Q9CA86;GB:Q8LFI7;GB:Q9M9Z9); similar to Zinc finger, RING-type; Pex2 / Pex12, N-terminal [Medicago truncatula] (GB:ABE85545.1); contains InterPro domain Pex2 / Pex12, N-terminal; (InterPro:IPR006845); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.254430309868457 2.77600910438295 0.0229781291673486 1 3.57075481277008 13.3506937177592 0.254430309868457 0.089585652903824
AT3G17240_at 8.92467705787137 8.99476024762268 9.06522708976968 9.27274841734724 9.02423803963626 8.6918212166296 8.7642909222768 8.34677128366168 8.21958177214367 7.83968703588223 8.24825225828957 8.52618295787292 7.63851447710441 8.16890134800015 8.29899500865027 7.91368417830593 8.0814612534396 8.31756060731155 7.54810508582659 0.152570294308161 0.153042333436039 0.153066736321496 0.152149261301960 0.154940562688986 0.152175046193135 0.146847138013944 0.150247862153164 0.159764112238428 0.160946596287938 0.152415580466128 0.146771674218737 0.154567088220806 0.154811368807274 0.151550504820384 0.15135793637253 0.152013932930890 0.155155996685424 0.164603188577119 3 3 - 5890289 5890855 5890561 5889878 5892258 - gene protein_coding_gene FALSE TRUE AT3G17240.1|AT3G17240.2|AT3G17240.3 LPD2 (LIPOAMIDE DEHYDROGENASE 2); FAD binding / dihydrolipoyl dehydrogenase/ disulfide oxidoreductase/ oxidoreductase|LPD2 (LIPOAMIDE DEHYDROGENASE 2); FAD binding / dihydrolipoyl dehydrogenase/ oxidoreductase lipoamide dehydrogenase precursor (lpd2) mRNA, complete Identical to Dihydrolipoyl dehydrogenase 2, mitochondrial precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 2) (Pyruvate dehydrogenase complex E3 subunit 2) (PDC-E3 2) (E3-2) (Glycine cleavage system L protein 2) (LPD2) [Arabidopsis Thaliana] (GB:Q9M5K2;GB:Q8LBH6;GB:Q9ZRQ0); similar to dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) [Arabidopsis thaliana] (TAIR:AT1G48030.2); similar to Dihydrolipoyl dehydrogenase, mitochondrial precursor (Dihydrolipoamide dehydrogenase) (Pyruvate dehydrogenase complex E3 subunit) (PDC-E3) (E3) (Glycine cleavage system L protein) (GB:P31023); similar to ferric leghemoglobin reductase-2 precursor [Glycine max] (GB:AAC26053.1); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027)|similar to dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) [Arabidopsis thaliana] (TAIR:AT1G48030.2); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.267976596412598 2.77510038317188 0.0230111702624957 1 3.56944831171443 16.8947261055549 0.267976596412598 0.0998332463687722
AT1G05055_at 5.96215570463426 5.71773915947521 5.89457418324966 6.22250650225709 6.21239044674721 5.87661188912424 6.00818012176444 6.28908674534882 4.80338561166762 5.18405588402337 5.81920265174353 5.8232940632126 5.53219718687469 5.21147171985082 5.58839587208922 5.16590399279429 5.36776973945798 5.47668453983623 5.03949103777676 0.208283623652274 0.201409314559085 0.212137824920506 0.204290453938047 0.214908579197289 0.205230092644338 0.217111992713357 0.211990899749534 0.22029061256297 0.210403107554667 0.201409314559085 0.203315538762035 0.201409314559085 0.208447046461874 0.201409314559085 0.206852091446628 0.213375834437801 0.211783730540149 0.213669264590485 1 1 - 1448924 1449580 1449296.545 1448717 1450886 - gene protein_coding_gene FALSE TRUE AT1G05055.1 ATGTF2H2/GTF2H2 (GENERAL TRANSCRIPTION FACTOR IIH 2); general RNA polymerase II transcription factor Member of transcription factor TFIIH complex. Involved in transcription and DNA repair and interacts with AtXPD. similar to OSJNBa0043L24.23 [Oryza sativa (japonica cultivar-group)] (GB:CAE04735.1); similar to RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 (ISS) [Ostreococcus tauri] (GB:CAL53494.1); similar to Os04g0508900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053274.1); contains InterPro domain TFIIH C1-like, C-terminal; (InterPro:IPR004595); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain TFIIH basal transcription factor complex, subunit SSL1; (InterPro:IPR012170); contains InterPro domain Ssl1-like; (InterPro:IPR007198); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.273183891057686 2.77412450484953 0.0230467073994681 1 3.56804522584228 11.2764518350193 0.273183891057686 0.103679073143040
AT2G11520_at 7.52390334931872 7.62520996775103 7.91036679895882 7.7353084137229 7.90516432711792 7.59431089248184 6.93082341671771 6.88566560519083 6.11775941251962 6.12497131824361 6.22137594077955 5.8438883949596 5.83017623312421 6.04159038584287 5.8881857356832 5.8301649336564 5.73087012263629 6.08588222373572 5.84543356095409 0.252048991116223 0.240582066731103 0.245332855054888 0.248933572054170 0.240082619202344 0.240838669715514 0.244604767017000 0.242418184696229 0.245618193148334 0.245745992310917 0.245148209855082 0.240082619202344 0.243101610854781 0.241427510584465 0.243702271779134 0.241106022202707 0.257466228586624 0.240082619202344 0.240082619202344 2 2|0 +|/ 4627827 4628499 4628142.889 4625663 4628658 + gene protein_coding_gene FALSE TRUE AT2G11520.1 CRCK3 (calmodulin-binding receptor-like cytoplasmic kinase 3); kinase high overall homology to CRCK1 similar to CRCK1 (CALMODULIN-BINDING RECEPTOR-LIKE CYTOPLASMIC KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G58940.1); similar to Protein kinase [Medicago truncatula] (GB:ABE86346.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.224757836194463 2.77310788256489 0.0230837880490743 1 3.56658352610732 13.4955465181781 0.224757836194463 0.064653360191688
AT3G52120_at 6.5481171482621 6.31793805043011 6.73399498065287 6.62988755881294 7.04402958063228 6.96630127845295 6.46580773134492 6.3949718295834 6.55838882267896 6.37105468174698 6.57688210800346 6.4120502702917 6.29815290885521 6.90191816090001 6.39382572487187 6.18517756402574 6.06643792797956 6.59944239736968 6.34368488017129 0.217700025059686 0.223147144052196 0.217684044098838 0.213462987242876 0.218435538929519 0.223645168730814 0.212538894987112 0.215328715108114 0.224848470668033 0.212538894987112 0.212538894987112 0.21325759953087 0.214181646234935 0.220331119324300 0.216646781453806 0.216886510346762 0.231548588433711 0.214219510886993 0.213358076624183 3 3|0 +|/ 19341773 19342588 19342092.333 19339689 19342948 + gene protein_coding_gene FALSE TRUE AT3G52120.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein Identical to Splicing factor 4-like protein (SF4-like protein) [Arabidopsis Thaliana] (GB:Q94C11;GB:Q9SUZ3); similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G52350.1); similar to PREDICTED: similar to splicing factor 4 isoform a isoform 3 [Canis familiaris] (GB:XP_864993.1); similar to Os09g0281600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062768.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain D111/G-patch; (InterPro:IPR000467) 0.208352207160353 2.77280241860224 0.0230949415892173 1 3.56614432330557 13.0644370252646 0.208352207160353 0.0473551008790567
AT4G39620_at 6.41656734907077 6.59248831954474 5.67340958246722 5.25276549881917 6.61722199969576 6.15325432303711 6.9742288604572 6.31298836687753 6.54812857935002 6.41765025560147 6.40265227358502 6.62169992197031 5.77781997990866 6.50391609566105 7.25889327795504 6.42724337896466 5.74561765012112 6.18330536420888 6.3374306015431 0.199361597560310 0.195119639995419 0.200173617606247 0.192306773439312 0.190782102836094 0.197957075028948 0.198758296954885 0.198760434492572 0.197330868083989 0.191633315938723 0.191497738708408 0.194849635524113 0.189737316122725 0.195429517061414 0.190447660266777 0.194346653959992 0.206152485231103 0.203278194599591 0.193136021090003 4 4 + 18396791 18397497 18396997.182 18395288 18397572 + gene protein_coding_gene FALSE TRUE AT4G39620.1 EMB2453 (EMBRYO DEFECTIVE 2453); binding similar to EMB2750 (EMBRYO DEFECTIVE 2750), binding [Arabidopsis thaliana] (TAIR:AT3G06430.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE94500.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.359582512842049 -2.77017138173204 0.0231912386442263 1 3.5623612344667 12.6488888566437 -0.359582512842049 0.160521109604313
AT3G03890_at 8.71218401395447 8.7427177940917 9.33135871013544 9.2651333404362 9.14657543083632 8.69324074470564 8.95913804776757 8.34756843568205 8.08419101882595 8.00653431707238 8.06355922198676 7.78894426934477 7.9068554072133 8.2442063402279 8.03263450664113 8.70969336683666 8.69211882597477 8.14292354592118 7.86908373605615 0.146463285960902 0.147135905922050 0.154062501500300 0.151746038825677 0.151259612536908 0.149070806473191 0.153184114993679 0.142251475304683 0.157883056374441 0.145915687228802 0.156953980760204 0.154953662386671 0.147153229698212 0.148122487374537 0.154234617482129 0.142251475304683 0.146777562374799 0.142251475304683 0.150244577677247 3 3|0 -|/ 999677 1000687 1000250.7 999474 1002491 - gene protein_coding_gene FALSE TRUE AT3G03890.1|AT3G03890.2 FMN binding similar to FMN binding [Arabidopsis thaliana] (TAIR:AT3G21140.1); similar to root border cell-specific protein [Pisum sativum] (GB:AAF61443.1); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.314844447593967 2.76996029354745 0.0231989823607698 1 3.56205770737933 16.9918495444527 0.314844447593967 0.132344151200341
AT2G29300_at 4.17033857426558 3.99239269944927 4.30358631440434 4.30896646589242 5.14507749334594 4.78008189589319 6.7121578521114 5.83702755601003 5.33983719397763 6.84207279442626 6.70109426729889 6.12215539616836 6.41701102465796 6.2332079491247 5.75792596942767 6.57529020008004 6.8736772539392 6.47685881174652 7.59089467349253 0.230447796828057 0.226557365184961 0.239211361272542 0.235873088115024 0.225554672922264 0.223902233686653 0.230501032526730 0.225759926716698 0.229662157681472 0.233150390143215 0.224607079867290 0.222895386859866 0.221173634658891 0.224928359314466 0.227652622135503 0.221568127588780 0.237417501840412 0.238463856999163 0.225590960843656 2 2|0 +|/ 12595619 12596400 12595947.6 12595274 12596616 + gene protein_coding_gene FALSE TRUE AT2G29300.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29320.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.369916703159245 -2.76851948676749 0.0232519087709114 1 3.55998590995021 11.3989973545986 -0.369916703159245 0.166956813353409
AT4G35450_at 11.3643696682529 11.3611221203122 11.4150807440184 11.1935320094594 11.3741774461305 11.3416443967237 11.9185478680108 12.0078005183677 11.4529450960371 11.7102326986759 11.6708002760418 11.5848960935920 11.5588474404724 11.4718497338752 11.4096557826942 11.5466775411538 11.4853687759484 11.4507866057726 11.6295548822341 0.0790378277652612 0.0793877432897738 0.0785914793931032 0.0862139816937522 0.0793407984088843 0.0831884436481471 0.0789881800633892 0.0838687628747514 0.0919266749881048 0.0794164083823312 0.0794473836675196 0.0790196537290142 0.0790775783018527 0.0804903789617993 0.0809269745927346 0.07856368125461 0.0851240483888003 0.0835489027974723 0.0791518732843707 4 4|0 +|/ 16840573 16841703 16841151.375 16839550 16842082 + gene protein_coding_gene FALSE TRUE AT4G35450.1|AT4G35450.2|AT4G35450.3|AT4G35450.4 AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2); protein binding ankyrin repeat-containing protein 2 (AKR2) mRNA, complete Identical to Ankyrin repeat domain-containing protein 2 (AtAKR2) (AKR2) [Arabidopsis Thaliana] (GB:Q9SAR5;GB:O81128;GB:Q9SVX0); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17390.1); similar to TGB12K interacting protein 2 [Nicotiana tabacum] (GB:AAO91861.1); similar to TGB12K interacting protein 3 [Nicotiana tabacum] (GB:AAO91862.1); contains InterPro domain Ankyrin; (InterPro:IPR002110)|Identical to Ankyrin repeat domain-containing protein 2 (AtAKR2) (AKR2) [Arabidopsis Thaliana] (GB:Q9SAR5;GB:O81128;GB:Q9SVX0); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17390.1); similar to ankyrin-repeat protein HBP1 [Nicotiana tabacum] (GB:AAK18619.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.203534336220720 -2.7679135532607 0.0232742039795402 1 3.55911459252726 23.0570032664976 -0.203534336220720 0.0417197516232764
AT3G57530_at 7.37205417714659 7.63822975987028 7.9592186221777 7.93291991269772 8.58407495720372 8.14331307324742 8.15010490609923 7.81097283321506 7.92035944219424 7.63562671049908 8.29804287069138 8.33839867039023 7.71094245559259 8.05022762383044 7.02967009817021 8.09391082333656 7.74267304870938 8.02512698372504 7.75197385554577 0.197363932324514 0.183658667411253 0.18535336149748 0.194364568308124 0.190713798309517 0.179449451481361 0.189012598572984 0.191241748720104 0.193958195025545 0.191287835075269 0.189490069587469 0.183676616121250 0.186992127435406 0.197460320529794 0.198488982143279 0.184024517231406 0.198374875583152 0.187597954378584 0.179449451481361 3 3 - 21307652 21308475 21308098.3 21307531 21310568 - gene protein_coding_gene FALSE TRUE AT3G57530.1 CPK32 (CALCIUM-DEPENDENT PROTEIN KINASE 32); calcium- and calmodulin-dependent protein kinase/ kinase Calcium-dependent Protein Kinase. ABA signaling component that regulates the ABA-responsive gene expression via ABF4. AtCPK32 has autophosphorylation activity and can phosphorylate ABF4 in vitro similar to CPK14 (calcium-dependent protein kinase 14), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G41860.1); similar to CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12480.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to putative calcium-dependent protein kinase [Isatis tinctoria] (GB:AAZ30035.1); similar to calcium-dependent protein kinase [Fragaria x ananassa] (GB:AAB88537.1); similar to calcium-dependent calmodulin-independent protein kinase isoform 2 [Cicer arietinum] (GB:AAP72282.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.27692264565411 2.76789340348661 0.0232749457626897 1 3.55908561744882 15.7890830674833 0.27692264565411 0.106793470826742
AT1G30820_at 5.46281704807132 5.74754490175697 3.86608532494498 3.55785182481312 5.71953489616054 5.43003804516353 5.80407811922545 4.94729203385878 4.16568405125497 4.58716186874463 4.9512637507557 6.05391704749767 5.63919396260701 4.6768753574067 4.47174625103255 5.8197578678053 4.36227730796862 3.82705249700626 5.90506315285148 0.241324569415074 0.239745157796526 0.245891205200272 0.244856770110582 0.239158394319941 0.243257715346391 0.250966338404584 0.247366396803567 0.262249669682892 0.254923901636872 0.243114768151031 0.239158394319941 0.247332909358168 0.243744558834854 0.24130849882669 0.239158394319941 0.239158394319941 0.256190254283418 0.251337160884129 1 1|0 -|/ 10945241 10946223 10945662.8 10944894 10949439 - gene protein_coding_gene FALSE TRUE AT1G30820.1 CTP synthase, putative / UTP--ammonia ligase, putative similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3G12670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to putative CTP synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61286.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.378882344323983 -2.76663829598432 0.0233211983844997 1 3.55728076597578 9.9975203723545 -0.378882344323983 0.172531999122593
AT1G15810_at 5.23857604470154 6.05773312238012 6.08054460750925 6.21193901004802 6.58143297857948 6.29502756275634 5.65373478865434 4.98847383663286 4.5471351433811 4.46764838452193 4.39286521713262 4.49281005654103 4.61644453732203 4.33762137200109 4.59969588758983 4.35466901528098 5.15557190355984 4.46479931524966 4.60841057481418 0.211552987556985 0.206469960570771 0.206342294585148 0.213993395412535 0.209456171545641 0.214319130721364 0.210459158597268 0.207759927062034 0.208357078429747 0.205559780677171 0.205559780677171 0.206885325729316 0.212626610505509 0.208612429189912 0.209828327933398 0.206237138827998 0.218054464019437 0.210620345359031 0.206091654335631 1 1|0 +|/ 5445287 5446213 5445741.778 5444413 5446559 + gene protein_coding_gene FALSE TRUE AT1G15810.1 ribosomal protein S15 family protein similar to ribosomal protein S15 family protein [Arabidopsis thaliana] (TAIR:AT1G80620.1); similar to Os02g0803200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048424.1); similar to ribosomal protein S15-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44816.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15, bacterial chloroplast and mitochondrial type; (InterPro:IPR005290); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) 0.409175776904979 2.76643010227034 0.0233288797367852 1 3.55698137746103 10.4348699259029 0.409175776904979 0.190586775808401
AT3G52155_at 6.25086622917718 6.23760539169791 6.2929817234741 6.24231895653458 7.28289592080899 6.07091755584171 6.1274800579762 6.24227744085241 5.39600510830878 6.2012095971636 6.46633274478642 6.35949393944608 6.231662676926 6.51983368172067 6.65048696036379 6.7428635279303 5.18898569675399 6.18050879856162 5.39108797049546 0.268236953803740 0.269577805781513 0.284288119168314 0.267853746237181 0.267373594054776 0.308158013603803 0.264706237256527 0.267043978559057 0.304425394116209 0.266557913269813 0.256443261546169 0.263012165105480 0.283145920777035 0.260064854944249 0.265328907482404 0.256443261546169 0.302963110447191 0.267632357326017 0.27521361022412 3 3|0 +|/ 19354792 19355509 19355202.625 19354673 19355827 + gene protein_coding_gene FALSE TRUE AT3G52155.1 similar to hypothetical protein TQR14A11.4 [Oryza sativa (indica cultivar-group)] (GB:AAZ06218.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 0.443737351947042 2.76500374381541 0.0233815752680485 1 3.55493019662481 12.3210621905289 0.443737351947042 0.210872100746525
AT4G15880_at 5.20840207411047 5.66162391813026 5.67934224863009 5.77399944735467 5.52324736427336 5.51372166113202 5.64822887539506 5.7810203165274 5.06547380487028 5.72474517925451 5.97737301638794 6.33724754101813 5.99148591173937 6.11356040079898 5.52284483067536 6.47869533727128 5.91035358251882 5.50791735336073 5.81943505144307 0.220452126132524 0.217505174088899 0.224026610880135 0.225619831051073 0.231439378013200 0.226948334267771 0.221080686626975 0.221159059947321 0.232169845896899 0.219911792583394 0.225339067520669 0.220593966282096 0.222147955975593 0.218232738236179 0.236790213930749 0.229733224382549 0.241655582397630 0.217855980328277 0.236250595302913 4 4|0 +|/ 9014039 9015759 9014816.3 9012660 9016131 + gene protein_coding_gene FALSE TRUE AT4G15880.1 ESD4 (EARLY IN SHORT DAYS 4); cysteine-type peptidase EARLY IN SHORT DAYS 4 Arabidopsis mutant shows extreme early flowering and alterations in shoot development. It encodes a SUMO protease, located predominantly at the periphery of the nucleus. Accelerates the transition from vegetative growth to flowering. similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT3G06910.1); similar to putative SUMO protease [Oryza sativa (japonica cultivar-group)] (GB:BAB19414.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) 0.245571142919390 2.76491418316188 0.0233848880699908 1 3.55480140142433 11.3569412841495 0.245571142919390 0.0833711082111505
AT3G16520_at 11.7683028932898 11.9716150591944 11.5678940496482 11.7066344941333 11.8183624917919 11.6856253990674 12.2388372248396 12.3807722368142 12.1788111658018 12.2449323177260 12.1977674430310 12.1969597089123 12.2032514317294 12.1884380091960 11.8431538829576 12.2613392418428 11.8138126677809 12.3000174103903 12.0499558122331 0.0804385878467063 0.0787036841373428 0.0807470449247666 0.0775251453441576 0.0780993296419468 0.0852180625110579 0.079781743662775 0.0796445110106079 0.0824939282953691 0.079294483019214 0.0772382061782893 0.0772166107120411 0.078811395605622 0.0809552310419812 0.0789897392177225 0.0783140743412997 0.0787786955296973 0.080408820448792 0.0777336828580969 3 3|0 -|/ 5619372 5619920 5619648.1 5618551 5620879 - gene protein_coding_gene FALSE TRUE AT3G16520.1|AT3G16520.2|AT3G16520.3 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01390.1); similar to UDP-glycosyltransferase 88B1 [Stevia rebaudiana] (GB:AAR06919.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G01420.1); similar to UDP-glycosyltransferase 88B1 [Stevia rebaudiana] (GB:AAR06919.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.213780017823933 -2.76427994575923 0.0234083619387253 1 3.55388931146389 24.0340016009642 -0.213780017823933 0.0542711762199003
AT4G14230_at 9.34240320522016 9.30704061761076 8.91713008988771 8.88019729828291 9.67072481293355 8.92750227508325 8.86475613585687 8.72933064696847 8.4038468866466 8.171571845052 8.78524372068238 8.63447221051135 8.50624992459393 8.8979358191346 9.13022910380494 8.36589557855063 8.42653202019358 8.69576282310088 7.70787947547041 0.13836693840974 0.138300969496476 0.142692594123739 0.143241916722280 0.142872903951782 0.159330541808090 0.145168863239177 0.144737804453844 0.153119352377640 0.141892663252575 0.13847980640247 0.140062632518314 0.142017645484149 0.14042105613211 0.140294685537873 0.141409283126354 0.146923330954106 0.138404701214984 0.157128048201801 4 4 - 8200862 8201480 8201136.364 8200688 8203233 - gene protein_coding_gene FALSE TRUE AT4G14230.1 CBS domain-containing protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14240.1); similar to Os05g0395300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055462.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07635.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) 0.311931690990665 2.76194261728280 0.0234950776911602 1 3.55052791734453 17.4672470781277 0.311931690990665 0.131034992506931
AT1G74270_at 8.8916481666293 9.0094672180469 8.72002484159235 8.58584550238416 8.52878964634026 8.41417149462783 8.4637469339319 8.50344223982354 8.18627543395262 8.28052835806304 7.86404285789066 8.53285710418019 7.8735418944771 8.0929644657274 8.690690331721 7.6590246845576 7.89724944010381 7.83072742668363 8.43356249986143 0.165828120394797 0.168494037005882 0.17209198152767 0.172980263911980 0.173998715774325 0.182876341187417 0.173714529649439 0.171914574493306 0.175432357852176 0.171115790929594 0.174528115139293 0.166632575090581 0.178069572322269 0.169400201999665 0.171752806022104 0.170931256475495 0.173655816300944 0.173980416586359 0.170499034178858 1 0|1 /|- 27932082 27932835 27932336.667 27931853 27933158 - gene protein_coding_gene FALSE TRUE AT1G74270.1 60S ribosomal protein L35a (RPL35aC) Identical to 60S ribosomal protein L35a-3 (RPL35AC) [Arabidopsis Thaliana] (GB:Q9C912); similar to 60S ribosomal protein L35a (RPL35aA) [Arabidopsis thaliana] (TAIR:AT1G07070.1); similar to ribosomal protein L33 [Castanea sativa] (GB:AAK25760.1); contains InterPro domain Ribosomal protein L35Ae; (InterPro:IPR001780) -0.199926544998224 -2.76112448825219 0.0235255082314176 1 3.54935129774662 16.8172716919020 -0.199926544998224 0.0373567511374557
AT3G18860_at 8.23652242268235 8.28536298821663 8.54987046380334 8.29901361169367 8.74417301808188 8.48816557055544 8.31747697277823 8.12181382706641 7.99567802764786 7.68863029673265 8.02306993183261 8.40030352689277 7.89916399957012 8.23526205283375 7.65119316374393 8.27335563634427 8.1268021182936 8.00763848431082 8.00192634992589 0.142022410344531 0.151574313798873 0.144122554540265 0.151317697586237 0.146977576410002 0.146184175720839 0.145836065132012 0.147953491825664 0.155304656178441 0.145955664981100 0.150098803715424 0.141087213535863 0.151873402620525 0.142309853376960 0.147161798919225 0.144346871746877 0.153375416219812 0.146044327959442 0.150491510548480 3 0|3 /|+ 6507246 6508326 6507721.111 6501674 6508559 + gene protein_coding_gene FALSE TRUE AT3G18860.1|AT3G18860.2 transducin family protein / WD-40 repeat family protein similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os07g0123700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058799.1); similar to putative phospholipase A2, activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30961.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain PUL; (InterPro:IPR013535)|similar to guanine nucleotide-binding family protein / activated protein kinase C receptor, putative / RACK, putative [Arabidopsis thaliana] (TAIR:AT1G48630.1); similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os07g0123700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058799.1); similar to putative phospholipase A2, activating protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30961.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain PUL; (InterPro:IPR013535) 0.230849334736636 2.76104049623107 0.0235286346213867 1 3.54923050066412 16.3665549455247 0.230849334736636 0.0711712296671373
AT1G22860_at 5.31136829439623 5.70808489728946 4.96017314173455 5.47470139348388 5.27558440823953 5.38001526443007 5.04752115789988 5.09964787333012 5.41979742079989 5.19477301204928 4.83390788815729 4.63586274878877 4.84728898397894 4.94663502886934 4.68901849708227 4.75533265184602 4.74892448640114 5.10984145188554 5.51181430176306 0.245862227596222 0.24432682039606 0.254150488092824 0.238717492617378 0.242032254788195 0.242319957244836 0.250841300313849 0.243707211903536 0.2422064451253 0.240415498879105 0.236252196768983 0.241678082393212 0.238145394869504 0.238090058783791 0.236252196768983 0.240503751400434 0.248593275095814 0.240499188643065 0.238007119550983 1 1|0 +|/ 8087970 8088797 8088412.1 8083389 8089225 + gene protein_coding_gene FALSE TRUE AT1G22860.1 TGF beta receptor associated protein-related similar to Os05g0104100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054400.1); similar to PREDICTED: similar to Transforming growth factor, beta receptor associated protein 1 [Gallus gallus] (GB:XP_416922.2); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.286823557417416 -2.7608601022618 0.0235353507672583 1 3.54897105785505 10.3802935765156 -0.286823557417416 0.114235267615790
AT1G18650_at 4.57513477919288 5.21788924626342 3.46381680858757 3.69648855425879 4.28927965469140 4.96313109461283 5.16614806028355 5.94533251606333 6.76713240552409 6.2451344565718 7.62433562979825 7.22809804519272 6.92692465601764 7.07439087198072 7.38472393051912 6.80932604681155 5.30593359808119 6.86591525932513 7.01656120415856 0.21031132486893 0.217064672080655 0.213920669468324 0.214585159917731 0.210573496666101 0.205690679151077 0.209746270883251 0.207258129731313 0.203412785099724 0.207611066528140 0.203417590252358 0.209765624856535 0.203412785099724 0.203628566719733 0.207886679363291 0.203412785099724 0.207908977959155 0.208387705996774 0.209598387519012 1 1|0 -|/ 6419054 6420354 6419550 6418850 6420549 - gene protein_coding_gene FALSE TRUE AT1G18650.1 glycosyl hydrolase family protein 17 similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G08000.1); similar to glycosyl hydrolase family protein 17 [Arabidopsis thaliana] (TAIR:AT5G61130.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); similar to Os07g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060198.1); contains InterPro domain X8; (InterPro:IPR012946) -0.448383569891085 -2.76077944467974 0.0235383543190001 1 3.54885505571114 11.4540186026445 -0.448383569891085 0.213949995934222
AT4G09320_at 11.6679045615112 11.8418341031502 11.4363851151386 11.6406714301633 11.2685265224143 11.1487376296746 11.7483619390666 11.8392192677603 11.4944848523549 11.5896014186431 11.5521119888638 11.7897473428217 11.2906236500601 11.4288798813649 11.8739730194601 11.2916153839646 11.3133629303400 11.3044329576637 11.4300547611268 0.0886856362639421 0.087619670426893 0.0959870033410061 0.0873383863693467 0.0883379060385106 0.0958196419525007 0.0931243748406569 0.0864460631015054 0.0987589344304995 0.0892424517167373 0.0866490064682296 0.08619848311911 0.0889417741506808 0.0905152819657308 0.0906950221581671 0.0843722431981682 0.0853173327800843 0.0907356518674096 0.0852397295412274 4 4 + 5923443 5924333 5924081.727 5923397 5924529 + gene protein_coding_gene FALSE TRUE AT4G09320.1 NDPK1 (nucleoside diphosphate kinase 1); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase type 1 (NDPK1) gene, complete Identical to Nucleoside diphosphate kinase 1 (EC 2.7.4.6) (Nucleoside diphosphate kinase I) (NDK I) (NDP kinase I) (NDPK I) (NDPK1) [Arabidopsis Thaliana] (GB:P39207;GB:Q41989); similar to NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2), ATP binding / nucleoside diphosphate kinase [Arabidopsis thaliana] (TAIR:AT5G63310.1); similar to nucleoside diphosphate kinase 1 [Brassica rapa] (GB:BAB86292.1); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) -0.212435038290962 -2.75928861713388 0.0235939409222719 1 3.54671090463757 23.066608606956 -0.212435038290962 0.0532234723405465
AT1G64280_at 8.713122722597 8.98458528517105 8.82412497857778 8.9456163926883 8.6215719995161 8.37956275063134 7.46315528864444 7.90530683084844 8.29436080261734 7.51184260241074 8.03311602600478 8.01817213447064 7.7813656270698 7.95077296679529 7.55749744614174 8.03907599203825 8.09715633228469 8.21515599530082 7.74736678993291 0.165888758696752 0.159319724457386 0.152795132136372 0.153883760719500 0.151532419229478 0.165603865348969 0.157776712938344 0.160468078278593 0.161580563272145 0.160712734091537 0.154780386042829 0.152953445671329 0.156028865349756 0.160761891185858 0.163715138322297 0.150745771195111 0.160658544033740 0.169286761036255 0.167789665246399 1 1 - 23857001 23857751 23857329.909 23856411 23859229 - gene protein_coding_gene FALSE TRUE AT1G64280.1 NPR1 (NONEXPRESSER OF PR GENES 1); protein binding This gene is a key regulator of the salicylic acid (SA)-mediated systemic acquired resistance (SAR) pathway. It is similar to the transcription factor inhibitor I kappa B, and contains ankyrin repeats. It confers resistance to the pathogens Pseudomonas syringae and Peronospora parasitica in a dosage-dependent fashion. Although transgenic Arabidopsis plants overexpressing NPR1 acquire enhanced sensitivity to SA and (benzothiadiazole) BTH, they display no obvious detrimental morphological changes and do not have elevated pathogenesis-related gene expression until activated by inducers or pathogens. Identical to Regulatory protein NPR1 (Nonexpresser of PR genes 1) (Noninducible immunity 1) (Nim1) (Salicylic acid insensitive 1) (Sai1) (NPR1) [Arabidopsis Thaliana] (GB:P93002;GB:O04742); similar to ankyrin repeat family protein / BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26120.1); similar to NPR1 [Brassica juncea] (GB:ABC94642.2); similar to putative NPR1 [Brassica napus] (GB:AAM88865.2); similar to putative NPR1 transcriptional factor [Brassica juncea] (GB:AAV52267.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.268262749282201 2.75764450422024 0.0236553987142359 1 3.54434621700426 16.3859953460844 0.268262749282201 0.101280387905302
AT2G27190_at 8.41403966055197 8.36237497589943 8.41032302641475 8.1763257473155 8.95391886507003 8.50962479258432 8.03699837035457 7.67723881588938 6.52069403628726 7.73197503604873 7.09021552496017 7.27996283721474 8.17166030404497 7.47659901174064 6.85609054446943 7.59986939676895 8.1489240798494 7.01283682078152 7.62226306307143 0.165187243779029 0.160583062088118 0.163082962808233 0.167489188054127 0.183408793202630 0.166070541581234 0.165083486931627 0.159141634104964 0.181841762389487 0.163230275946138 0.162887598198815 0.163061921511322 0.164876721394963 0.172271183337295 0.183089739180311 0.166376922025891 0.160408472555804 0.181614162523168 0.159616145785619 2 2|0 -|/ 11628515 11629152 11628746.6 11628300 11630696 - gene protein_coding_gene FALSE TRUE AT2G27190.1 PAP1 (PURPLE ACID PHOSPHATASE 1); acid phosphatase/ protein serine/threonine phosphatase secreted purple acid phosphatase precursor Identical to Iron(III)-zinc(II) purple acid phosphatase precursor (EC 3.1.3.2) (PAP) (PAP1) [Arabidopsis Thaliana] (GB:Q38924;GB:Q42349;GB:Q8VZC6;GB:Q9SHS9); similar to PAP10, acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G16430.2); similar to purple acid phosphatase [Nicotiana tabacum] (GB:BAC55156.1); similar to purple acid phosphatase [Ipomoea batatas] (GB:CAA07280.1); similar to secreted purple acid phosphatase precursor (GB:AAA91803.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.276380461007617 2.75575726664906 0.0237261466657596 1 3.54163175055255 15.6906874618173 0.276380461007617 0.107272693920653
AT1G72310_at 5.45133753374001 5.93429668294637 4.70702329041773 5.06012868945246 5.45012168687628 5.30755817502681 5.41859167625 6.52287293214761 5.13540956260436 6.24305861171909 5.90230341339943 5.98569394768636 5.82104327535585 5.38327692713906 5.74941096807617 5.86798783059522 5.45855411177397 5.65992053155992 6.43922238841823 0.239254874378619 0.239893364818053 0.236151488206107 0.233957982057585 0.236025007084576 0.247631075745704 0.233957982057585 0.24110797334893 0.249599725629411 0.236363591976009 0.242923258634087 0.237973070769957 0.242640053496186 0.246356888368081 0.238855119727709 0.237368122101065 0.242030820774242 0.242638148601662 0.233957982057585 1 1 + 27230484 27231007 27230717.818 27229559 27231207 + gene protein_coding_gene FALSE TRUE AT1G72310.1 ATL3 (Arabidopsis T?xicos en Levadura 3); protein binding / zinc ion binding Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). Identical to RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3) (ATL1P) [Arabidopsis Thaliana] (GB:Q9XF63); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G53820.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE92645.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.455636528854994 -2.75436668295464 0.0237784148117386 1 3.53963156864351 11.3153683649966 -0.455636528854994 0.218740986190322
AT2G20260_at 12.4960381869275 12.5129373839039 12.4319758953378 12.3765145912805 12.8808840890074 12.6147290048505 12.7010567559412 12.6570764153101 12.4548145441619 12.7173838995134 13.2065822664198 13.2725312969740 13.0537897458713 13.0258863576093 13.1109001830543 13.0911705145474 12.6285812461986 12.9455905938455 12.6638062293401 0.0844034402079176 0.0839188645168732 0.0845485267051945 0.0866620347982604 0.0845833356453986 0.0909006734792733 0.0853782092813496 0.088084097984721 0.0915185399991329 0.0870481132690254 0.0863398969726362 0.0839188645168732 0.0847808011558415 0.0852174631343332 0.0854635122528467 0.0839188645168732 0.093135048761425 0.0877309504449478 0.0866396686172133 2 2 + 8743865 8744648 8744072.182 8743815 8744848 + gene protein_coding_gene FALSE TRUE AT2G20260.1 PSAE-2 (photosystem I subunit E-2) Encodes subunit E of photosystem I. Identical to Photosystem I reaction center subunit IV B, chloroplast precursor (PSI-E B) (PSAE2) [Arabidopsis Thaliana] (GB:Q9S714); similar to PSAE-1 (PSA E1 KNOCKOUT) [Arabidopsis thaliana] (TAIR:AT4G28750.1); similar to Photosystem I reaction center subunit IV A, chloroplast precursor (PSI-E A) [Contains: Photosystem I reaction center subunit IV A isoform 2] (GB:Q41228); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375) 0.207063088745802 2.75129198740114 0.0238944027230373 1 3.53520880360345 25.4108418319383 0.207063088745802 0.0477500242785755
AT3G55520_at 8.2458828008777 8.11905227411317 7.95128399175333 7.7433301854576 8.06837643796299 7.97796358609565 8.27337944198666 8.10203029307326 8.04359408595368 8.0418271079579 7.84356139277733 8.013222218101 7.52842906463394 8.04864378433049 7.72042840292189 7.77792837261833 7.63624837160243 7.80664257853457 7.82941406296547 0.136975706751248 0.129268170997659 0.129526263482463 0.130509211574157 0.135224965454211 0.129643202434289 0.133932150446224 0.137247161240004 0.130253363386692 0.139007519894679 0.134074296933572 0.126946370510161 0.133968070704832 0.141304020937433 0.131249302300936 0.126622054126188 0.132421344959036 0.127005095423746 0.132428068095102 3 3|0 +|/ 20605208 20605968 20605536.222 20604640 20606324 + gene protein_coding_gene FALSE TRUE AT3G55520.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative similar to peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G48570.1); similar to Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] (GB:ABE83468.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.21228569064883 -2.7498261952851 0.0239499009770631 1 3.53310025533158 15.9444122641562 -0.21228569064883 0.0538602672459305
AT1G21270_at 9.62001631955949 9.93771089126684 9.275928509931 9.31666869423491 8.79805283874894 8.26258846516163 8.36476742225292 8.1436361978822 10.0661592562945 8.80285193049121 9.15342190194894 9.40577653150036 8.26381620106203 9.44425641230526 8.42075957904603 8.65515437871704 7.71219253949253 9.21864919222135 8.89035648763704 0.192314005700970 0.190991035563143 0.197907517232492 0.198717193928492 0.199026422139251 0.201656725234732 0.190991035563143 0.196467260744536 0.204710827974407 0.205379657577962 0.192120210948323 0.195049115971041 0.197578495336267 0.193103235575094 0.197189744935308 0.198387277387408 0.203510046602867 0.193129263975683 0.199898262094165 1 1 + 7446771 7447233 7447033.727 7444919 7447537 + gene protein_coding_gene FALSE TRUE AT1G21270.1 WAK2 (wall-associated kinase 2); protein serine/threonine kinase cytoplasmic serine/threonine protein kinase induced by salicylic acid. mutant plants exhibit a loss of cell expansion and dependence on sugars and salts for seedling growth, affecting the expression and activity of vacuolar invertase. Identical to Wall-associated receptor kinase 2 precursor (EC 2.7.11.-) (WAK2) [Arabidopsis Thaliana] (GB:Q9LMP1;GB:Q9XGN2); similar to WAK1 (CELL WALL-ASSOCIATED KINASE), kinase [Arabidopsis thaliana] (TAIR:AT1G21250.1); similar to WAK5 (WALL ASSOCIATED KINASE 5), kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21230.1); similar to WAK4 (WALL ASSOCIATED KINASE 4), protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT1G21210.1); similar to serine threonine kinase (GB:AAA32844.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain EGF calcium-binding; (InterPro:IPR013091); contains InterPro domain EGF; (InterPro:IPR006210); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) -0.286046148412728 -2.74890484256529 0.0239848529920651 1 3.5317748547551 17.9836091174685 -0.286046148412728 0.114557837111274
AT2G23840_at 9.69212586175625 9.77241875401644 10.3113312339290 10.0996850077044 10.5810277509123 9.9426487614095 10.5336156824858 10.3074366220012 9.56199234459299 9.6217822278098 9.77493948540353 9.5373298533237 10.1469859298068 10.1222511394594 9.42326602284554 10.1887540314509 10.0907130347011 9.97368131057678 9.21446152549522 0.126634299410709 0.123757222354095 0.128348943903388 0.131005407014129 0.122511622035913 0.135432736022701 0.130736226946719 0.123194579426051 0.134742288715133 0.131842527435663 0.128128079577681 0.123760797810823 0.124653916914524 0.131740697039057 0.132045423793673 0.129018622676693 0.125276756327866 0.130388172846372 0.136939172046233 2 2|0 -|/ 10161821 10162656 10162381.889 10160877 10162727 - gene protein_coding_gene FALSE TRUE AT2G23840.1 HNH endonuclease domain-containing protein similar to Os07g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058990.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL50123.1); contains InterPro domain HNH endonuclease; (InterPro:IPR002711); contains InterPro domain HNH nuclease; (InterPro:IPR003615) 0.29921768003526 2.7485971832008 0.0239965358356617 1 3.53133226993129 19.8416956093995 0.29921768003526 0.123576756001122
AT1G52380_at 6.97936639178567 7.91463093166445 6.7835333561585 7.23731891063021 7.57183073168605 6.92420281700869 7.35474129246522 7.75457874306989 7.88413930112044 7.67000973620846 7.12978058619018 7.52660636165126 7.25178590961107 7.2713141392326 6.60758299133083 7.06382567297457 6.8285307404908 7.0962783291777 7.39294823298096 0.225964054719029 0.218043759628569 0.233466589872734 0.227201207767998 0.222762270595608 0.237378086005437 0.219245732111531 0.214484910263597 0.214484910263597 0.22335030064015 0.222209189866214 0.222325506969605 0.214484910263597 0.227122726555704 0.234130385544132 0.214484910263597 0.230917355446537 0.220445213629466 0.219491853091472 1 1 + 19514382 19514941 19514629.273 19512652 19515208 + gene protein_coding_gene FALSE TRUE AT1G52380.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein similar to Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G15970.1); similar to hypothetical protein DDBDRAFT_0205337 [Dictyostelium discoideum AX4] (GB:XP_642253.1); similar to Os05g0349500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055271.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.461838608989844 -2.74765055676732 0.0240325188990965 1 3.52997047965408 14.6880231541931 -0.461838608989844 0.222960837166520
AT3G52300_at 10.8309556461694 11.1151923157973 11.1141040137039 11.1579005650714 11.0443717708996 10.888290630438 10.9581603034330 11.0933883859394 10.5363390417673 10.8841487708540 11.3429207173611 11.3189207536577 11.1308698455753 11.1403056579851 11.3344146378824 10.9752587720962 10.7563521454545 10.9989554291494 10.7940507958893 0.087918849894115 0.0838497605381381 0.0903885499867235 0.0857339210426137 0.0845828308069166 0.0943891556178861 0.0855996164835038 0.0875805576594842 0.093566342554686 0.0822106068773278 0.0824523099555185 0.0824023524143284 0.0830204224220669 0.0904772968631598 0.0847978445905025 0.0846288768604112 0.0921904481404649 0.0834252669376095 0.082551093064288 3 3 + 19407683 19408998 19408140 19407543 19409355 + gene protein_coding_gene FALSE TRUE AT3G52300.1|AT3G52300.2 ATP synthase D chain-related|ATPQ (ATP SYNTHASE D CHAIN, MITOCHONDRIAL) Identical to ATP synthase D chain, mitochondrial (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9FT52;GB:Q8RW89;GB:Q8W039); similar to ATP synthase D chain, mitochondrial, putative [Solanum demissum] (GB:AAT40531.1); contains domain FAMILY NOT NAMED (PTHR12700)|similar to ATP synthase D chain, mitochondrial, putative [Solanum demissum] (GB:AAT40531.1); contains domain FAMILY NOT NAMED (PTHR12700) 0.219156395459216 2.74673251371837 0.0240674681777320 1 3.52864978515937 21.9567600944642 0.219156395459216 0.0612712688042311
AT4G28100_at 4.64333915558687 5.41700132735072 4.56783932808609 4.45013352622756 4.43115123496053 4.704908759712 4.88772470289731 5.67183098360200 4.84002557409301 4.331777158732 4.47932955374217 4.65616163807701 4.78533857789236 4.33808908162956 4.34372837512277 4.7825407163427 3.93435479873972 4.24399867160909 4.82178398149983 0.228688595023397 0.215871821570576 0.226181566019004 0.218592768372821 0.215567780798129 0.225896457076659 0.227487803977386 0.228747929282369 0.229129447002531 0.225936554751738 0.21924933495438 0.225768135182697 0.216140033184868 0.220299361064574 0.225444208794831 0.215567780798129 0.245095362292986 0.216138179628731 0.216390892035935 4 4 - 13965319 13966298 13965855 13965114 13966866 - gene protein_coding_gene FALSE TRUE AT4G28100.1 Identical to Uncharacterized GPI-anchored protein At4g28100 precursor [Arabidopsis Thaliana] (GB:Q9SUC9;GB:Q8L9X7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18050.1); similar to hypothetical protein MtrDRAFT_AC139526g8v1 [Medicago truncatula] (GB:ABE80139.1); similar to Os07g0557700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059970.1) -0.417776029121601 -2.74578792020296 0.0241034824853739 1 3.52729087128107 9.40172691801257 -0.417776029121601 0.197477563444012
AT1G74880_at 9.09608834832537 9.10021368703912 8.50493160344744 8.59267238321964 9.40150102857545 8.9769729542627 9.84248224284643 9.97611318454957 9.34414445131934 9.8011794653849 9.79811411352651 9.90203223589508 9.9317789888138 9.84232299028481 9.51589282774254 10.3580074427292 9.45519111584253 10.0100042297905 9.93307985151945 0.137613380586372 0.139382662019152 0.154958666556398 0.151590858716911 0.136022918368539 0.140036854070232 0.134690444090717 0.138709670928252 0.151129782750014 0.135757463790426 0.132231649015499 0.133536254483630 0.132184539762721 0.139915808829446 0.136596379243952 0.136228595953272 0.152163002320185 0.144362620660017 0.137782428554560 1 1|0 -|/ 28133902 28134608 28134334.75 28133519 28134738 - gene protein_coding_gene FALSE TRUE AT1G74880.1 NDH-O (NAD(P)H:PLASTOQUINONE DEHYDROGENASE COMPLEX SUBUNIT O) Encodes subunit NDH-O of NAD(P)H:plastoquinone dehydrogenase complex (Ndh complex) present in the thylakoid membrane of chloroplasts. This subunit is thought to be required for Ndh complex assembly. similar to Os01g0959900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045462.1) -0.237919068155127 -2.74480483238622 0.0241410230002263 1 3.5258765530212 18.9586065536096 -0.237919068155127 0.0785059535149364
AT1G50380_at 6.857973702722 7.01427975865166 6.3915474863234 6.52758982437023 6.13522417100477 6.22117417323605 6.19369079888789 6.21821853339817 5.25953029110738 5.64876681300607 4.81410505513835 5.5184080443834 5.64891292071456 5.1616995826831 5.12453953518453 5.72460907632756 6.47116001255067 4.76436196723751 5.74485971748445 0.179184952107456 0.178465097343619 0.175756499904142 0.176541332340389 0.171448557341588 0.173271161996759 0.176481203441424 0.183690874797720 0.177218572993894 0.173889746018279 0.176035186075864 0.179348299558706 0.173711469734847 0.176836361427950 0.172773144444553 0.16844605291337 0.174686458253009 0.173156448396887 0.172722207752433 1 1 + 18668870 18669827 18669290.818 18665977 18670146 + gene protein_coding_gene FALSE TRUE AT1G50380.1 prolyl oligopeptidase family protein similar to prolyl oligopeptidase family protein [Arabidopsis thaliana] (TAIR:AT1G69020.1); similar to oligopeptidase B [Triticum aestivum] (GB:BAE97779.1); similar to Os06g0730600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058657.1); contains InterPro domain Peptidase S9A, prolyl oligopeptidase, N-terminal beta-propeller; (InterPro:IPR004106); contains InterPro domain Peptidase S9, prolyl oligopeptidase active site region; (InterPro:IPR001375); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S9A, prolyl oligopeptidase; (InterPro:IPR002470) -0.199867267134913 -2.74419263456871 0.0241644307988380 1 3.52499580216948 11.9222257051460 -0.199867267134913 0.0390536925174456
AT2G29190_at 5.86734966360874 5.74225294412314 5.96857552772752 6.08739102940527 6.37868064732147 5.91360875543529 5.98194563623423 5.62715061860592 5.20091804338423 5.37150500056238 5.72405653543969 5.48878678725041 5.9539680417653 5.45157840195393 5.34040246288153 5.51471569913355 5.55587467957619 5.34162211417113 5.27888139762584 0.209111737512766 0.206968043669676 0.200528576397097 0.206702991708265 0.211967091858450 0.215466841456508 0.202126850045028 0.205219164452093 0.221417815200310 0.218021415050385 0.210476219623731 0.210443393236339 0.200626261868282 0.201302706049525 0.207430099192818 0.204138672534905 0.210590767378511 0.209878422420121 0.208182395034278 2 2|0 -|/ 12551626 12552341 12551976.8 12550889 12555567 - gene protein_coding_gene FALSE TRUE AT2G29190.1 APUM2 (ARABIDOPSIS PUMILIO 2); RNA binding similar to APUM4 (ARABIDOPSIS PUMILIO 4), RNA binding [Arabidopsis thaliana] (TAIR:AT3G10360.1); similar to APUM1 (ARABIDOPSIS PUMILIO 1), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29200.1); similar to APUM3 (ARABIDOPSIS PUMILIO 3), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29140.1); similar to putative pumilio domain-containing protein PPD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89558.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABD33134.1); similar to Pumilio/Puf RNA-binding [Medicago truncatula] (GB:ABE83476.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Nucleic acid binding NABP; (InterPro:IPR012940); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.272498358705015 2.74107774244868 0.0242838908444703 1 3.5205143454657 11.3609412215388 0.272498358705015 0.105540317890284
AT2G37975_at 6.38743078315402 7.18364591930053 6.73405529976345 6.67547888511108 7.25095647881396 6.85105304008276 6.61895402030374 6.72355596729668 6.57875818348798 5.82558277708398 6.96463565200777 6.81583401176735 6.53723540617696 6.7428465317677 6.95159429709145 6.71712330803394 6.17584757648545 6.66344738639486 6.04579451849194 0.191531401809657 0.183667087693834 0.193652320202210 0.191024567221594 0.190663832355455 0.189539450076001 0.181167087126396 0.181728359363864 0.185021003636417 0.188689577182698 0.185085371010276 0.179364786736908 0.188343791295947 0.181473399173463 0.180634119132633 0.179709738106705 0.197565813616766 0.194419929830002 0.182926039647764 2 2 - 15898983 15899190 15899085 15898813 15900717 - gene protein_coding_gene FALSE TRUE AT2G37975.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G54085.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83862.1); contains domain UNCHARACTERIZED (PTHR15858); contains domain SUBFAMILY NOT NAMED (PTHR15858:SF1) 0.347757307478397 2.74022319029471 0.0243167694515435 1 3.51928484007752 13.2261991396801 0.347757307478397 0.155581250297692
AT3G12570_at 7.76546177112014 7.93656238130258 7.86554399541545 7.87099863997315 7.96112663416549 7.99813476387816 6.636463238002 7.01563274432228 7.62487580426536 7.00527583518195 7.44781671079313 7.15285359392022 7.35317239153847 7.47516101629602 6.94984938920065 7.33904849380804 7.27914648339281 6.77499592543456 7.40898871369853 0.152801293655361 0.157922746402282 0.161688942261571 0.154726593652128 0.162259713129117 0.164923276775676 0.149740808111335 0.148110471719421 0.154993998502799 0.150996668388473 0.148060563673410 0.148542095604445 0.146224766348268 0.162474478055465 0.146807672332384 0.155143466784694 0.151958541655210 0.153724137068516 0.147218645853402 3 3 + 3990300 3990812 3990563.091 3988677 3991086 + gene protein_coding_gene FALSE TRUE AT3G12570.1|AT3G12570.2|AT3G12570.3|AT3G12570.4 similar to SLT1 (SODIUM- AND LITHIUM-TOLERANT 1) [Arabidopsis thaliana] (TAIR:AT2G37570.1); similar to SLT1 protein [Nicotiana tabacum] (GB:AAG39002.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) 0.230273178752011 2.73936253698985 0.0243499288083993 1 3.5180465374835 14.9151833301540 0.230273178752011 0.072278925034855
AT4G30010_at 11.0826108410612 11.1273534239523 11.1742319503543 11.0929099740959 11.1522502090836 10.970835711346 11.1451537791288 11.1231371634412 10.5981779398971 10.7314738799444 11.1834608250518 11.2570384951160 10.9458182850309 11.0220943337528 11.2576427071897 11.0975435500833 10.9627797186506 10.8101260544332 10.6234669388361 0.0710478129077293 0.0662624364694037 0.068801475431543 0.0685003403786556 0.0689151475402591 0.0671518809444636 0.066817188533673 0.0734778634521065 0.0788909328857616 0.0669866718039884 0.0662624364694037 0.0662624364694037 0.0672137358599904 0.0728908222601799 0.071839166868088 0.0674710221448524 0.0750106054913785 0.0743771575667269 0.0676539722105162 4 4 + 14672991 14673198 14673096.545 14672838 14674150 + gene protein_coding_gene FALSE TRUE AT4G30010.1 similar to fiber protein Fb15 [Gossypium barbadense] (GB:AAP34362.1) 0.197008284630844 2.73795836520084 0.0244041281979056 1 3.51602618323054 21.9676116727526 0.197008284630844 0.0354703444896256
AT1G13380_at 6.56422191535847 7.0730550716511 6.02442044334569 6.54124161297576 7.7910036770798 7.44620585364648 6.71743464990736 6.69259336975853 5.89165305436689 6.10315974384435 7.16138920064264 6.98230739717022 6.55195673188594 6.33723233317897 6.69568828621454 6.58736452184517 6.7452096201467 5.92568633454827 6.51368567981948 0.249190861726455 0.237137375910735 0.245479782216797 0.254925718206839 0.253701531322077 0.253882823810365 0.240349821540921 0.261750774993855 0.274155965460317 0.247902278641056 0.253333172931814 0.237137375910735 0.251423046001377 0.240200061039586 0.24716295889868 0.237137375910735 0.249523434918339 0.260204057884727 0.240895975141196 1 1|0 -|/ 4589233 4590333 4589782.7 4589068 4590420 - gene protein_coding_gene FALSE TRUE AT1G13380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27435.1); similar to Os09g0281300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062767.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.321373227810105 2.73722177857475 0.0244326088884304 1 3.51496634567966 13.2526989721559 0.321373227810105 0.139039264926780
AT1G32050_at 10.4264754625096 10.5785153381007 10.5539247838427 10.5289126148526 10.6701738391777 10.4504313571349 10.5912257834216 10.5977423404698 10.4655991428204 10.3578301230955 10.8635886887437 10.9145784231846 10.7611076374966 10.8431927742960 10.7098577322664 10.6363783441487 10.5552281396010 10.6886102946157 10.1940679194426 0.0939238413447094 0.090879141837102 0.0928869869518891 0.093683232616016 0.0899905430295518 0.097794309231941 0.0899905430295518 0.0944486649293513 0.0989350490848765 0.0927926154626794 0.0928420771120089 0.0916146330457902 0.0899905430295518 0.0929829495825158 0.0963732665159603 0.0899905430295518 0.097690708098431 0.090962871382091 0.0918240634096825 1 1|0 +|/ 11529691 11530794 11530300.25 11528425 11531261 + gene protein_coding_gene FALSE TRUE AT1G32050.1 secretory carrier membrane protein (SCAMP) family protein similar to secretory carrier membrane protein (SCAMP) family protein [Arabidopsis thaliana] (TAIR:AT2G20840.1); similar to similarity to SCAMP37 [Pisum sativum] (GB:AAC82326.1); similar to Os02g0697800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047823.1); similar to Os04g0595800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053734.1); contains InterPro domain SCAMP; (InterPro:IPR007273) 0.204886471733881 2.73640564009405 0.0244642052015563 1 3.51379202902892 21.0925419313122 0.204886471733881 0.0464583145764424
AT3G59050_at 6.8936984588553 7.05464763793041 7.16304176249365 7.26165099935303 7.41096071170721 7.16241747181814 7.59183932813315 7.65974389300364 7.44955951335186 7.42278102362325 7.25889097250606 7.01104606343942 6.75623435732547 7.14512632258237 6.92113750907373 6.97548544461175 7.03814307553416 7.1594798476249 7.35043853531478 0.145086271274249 0.142696290470738 0.141962789911360 0.145147672904356 0.146876747970668 0.147560174510694 0.150044135045296 0.154007181210226 0.151034401236206 0.142122664484228 0.144178094300383 0.140153526381429 0.149983066591827 0.154763274302987 0.151128380642978 0.146213791086699 0.155875957264958 0.157684787761479 0.143465067343805 3 3|0 -|/ 21835932 21836459 21836170.6 21835673 21838486 - gene protein_coding_gene FALSE TRUE AT3G59050.1 ATPAO3 (POLYAMINE OXIDASE 3); oxidoreductase similar to ATPAO2 (POLYAMINE OXIDASE 2), amine oxidase [Arabidopsis thaliana] (TAIR:AT2G43020.1); similar to amine oxidase family protein [Musa acuminata] (GB:ABF69974.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); similar to Os04g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053923.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.212432334073508 -2.73493269930686 0.024521334991277 1 3.51167261766558 14.4951430195037 -0.212432334073508 0.0552728013478256
AT2G43330_at 6.38923253971847 6.75955771918219 6.24695342839342 5.96570707595799 6.64016844819702 5.90779331804117 7.6988554335015 7.69165100155678 5.69271619543019 6.4536180280014 6.62842248952303 6.5255357191515 6.29968478113403 6.93379773975694 6.34770740381208 6.48334311928298 6.49191511066691 6.3167011271398 6.5590437943541 0.226204526448070 0.221280155088609 0.225584916735360 0.21565773954552 0.222965799962866 0.215171093721991 0.228676138101440 0.223652787905293 0.227988877941236 0.217192950567779 0.224718947856935 0.215171093721991 0.216779191438889 0.215401865415834 0.222091464723532 0.215171093721991 0.226187058182981 0.23856267997105 0.220446931207215 2 2 + 18010349 18010797 18010581 18007931 18011160 + gene protein_coding_gene FALSE TRUE AT2G43330.1 ATINT1 (INOSITOL TRANSPORTER 1); carbohydrate transporter/ sugar porter Identical to Probable inositol transporter 1 (INT1) [Arabidopsis Thaliana] (GB:Q8VZR6;GB:O22848); similar to ATINT2 (INOSITOL TRANSPORTER 2), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G30220.1); similar to putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum] (GB:AAO74897.1); similar to Major facilitator superfamily [Medicago truncatula] (GB:ABE93354.1); similar to Sugar transporter superfamily; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE89732.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.338203087731245 -2.73305579880752 0.024594330515707 1 3.50897187217444 13.0317470916871 -0.338203087731245 0.150135815863810
AT1G02560_at 12.1896998508014 12.0941950485314 12.6548849151826 12.5028954263074 12.5128677610608 12.4944119797898 12.3331952079739 12.2478746380235 11.7536203223053 11.7602670728701 11.5564548136215 11.1751896815708 11.8534081641806 11.7987064427273 11.4707765171504 11.7674232923268 12.0090585117504 11.659548810666 11.2692089807177 0.0810699156747728 0.0805585368398568 0.0874080190386627 0.0828699283043393 0.0814250258359551 0.089389829630902 0.0805585368398568 0.0816136132768307 0.0908001445807354 0.083460457001295 0.0805585368398568 0.0819268158245254 0.0805585368398568 0.0814535760566705 0.0805585368398568 0.0805585368398568 0.0847354399986315 0.0830728591972442 0.0844435844058064 1 1 + 538470 539762 539072.636 537860 540109 + gene protein_coding_gene FALSE TRUE AT1G02560.1 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to CLPP3 (Clp protease proteolytic subunit 3), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G66670.1); similar to Clp protease 2 proteolytic subunit [Solanum lycopersicum] (GB:CAC67407.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.195989577435413 2.73197427578067 0.0246364934273968 1 3.5074155875717 24.006596222399 0.195989577435413 0.0345425898159346
AT3G51520_at 8.5308220268731 8.6508202337239 8.60118025558163 8.82566392569267 9.24575725597092 8.92759733295918 8.89181801786946 9.0306256680058 7.9633868611555 7.99996411727973 8.34433279045204 7.86432854642992 8.39692427623377 8.53476056983933 7.65360087895998 8.56241674610074 8.52852952341232 8.38580799577998 7.86999524156407 0.169481124411919 0.172619601568835 0.189669825070578 0.173565648760712 0.174279862650871 0.188745439336806 0.178466891472936 0.174038920275956 0.171860495829066 0.169121274780682 0.170839676638480 0.170507301258230 0.181224601838106 0.176057498998887 0.185236043276405 0.166822418516166 0.190675238812046 0.181269645263417 0.178495757811080 3 3|0 +|/ 19122237 19123206 19122744.286 19121575 19123739 + gene protein_coding_gene FALSE TRUE AT3G51520.1 diacylglycerol acyltransferase family similar to Diacylglycerol acyltransferase [Medicago truncatula] (GB:ABE88819.1); contains InterPro domain Diacylglycerol acyltransferase; (InterPro:IPR007130) 0.231708565917139 2.72676596031437 0.0248405752040962 1 3.49992056393563 16.9521787925350 0.231708565917139 0.0744910957280691
AT2G01540_at 8.0380548012948 8.22384544013745 7.87924204251634 8.1910631535364 8.14433725967934 7.46933027661603 5.00098018276052 5.80911108259696 5.51294953282757 5.40810826037331 4.78022738695439 4.85046119346831 5.47335469383221 5.14246593184675 5.22528917147872 5.14954391363473 5.03699975830657 5.02226786154921 5.35172762312218 0.252951442994729 0.244079555931846 0.23772645794516 0.236338518485671 0.241437080285010 0.240969246102724 0.229090779013302 0.228860156613937 0.232337321738183 0.228860156613937 0.237538682096413 0.235884229959108 0.228860156613937 0.233073301484717 0.230301404695447 0.230642910885867 0.232915290827425 0.233273117581807 0.235573017395162 2 2|0 -|/ 242300 243206 242821.4 242122 243492 - gene protein_coding_gene FALSE TRUE AT2G01540.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70790.1); similar to C2 [Medicago truncatula] (GB:ABE89197.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.406904869916222 2.72667454195896 0.0248441727127147 1 3.49978900277726 12.5991645520547 0.406904869916222 0.192741300805919
AT4G37800_at 8.39990186983979 8.93832017314873 8.32493326361505 8.7180952612148 9.14360064135725 9.04255501675485 11.0893231850308 11.2254647803585 11.1784454208074 11.4085167175669 12.0153279520543 12.1217524866885 11.5221147039976 11.6594179648870 11.9848238674872 11.5624147163027 10.8090553904089 12.0689894417229 10.9902876834682 0.127099803504327 0.120759728811099 0.126790833733284 0.117947078925283 0.115649386935981 0.116704711942394 0.111894755586925 0.114453231417898 0.120891189621727 0.113371379273822 0.117308019531823 0.111871530520504 0.112100402432878 0.111871530520504 0.11774197054387 0.111871530520504 0.116437176465804 0.112346843123374 0.112302034118507 4 4|0 -|/ 17775703 17776814 17776133 17775468 17777391 - gene protein_coding_gene FALSE TRUE AT4G37800.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 7 precursor (EC 2.4.1.207) (At-XTH7) (XTH-7) (XTH7) [Arabidopsis Thaliana] (GB:Q8LER3;GB:Q9T067); similar to xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative [Arabidopsis thaliana] (TAIR:AT5G65730.1); similar to endo-xyloglucan transferase [Gossypium hirsutum] (GB:BAA21107.1); contains InterPro domain Beta-glucanase; (InterPro:IPR008264); contains InterPro domain Glycoside hydrolase, family 16, active site; (InterPro:IPR008263); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.290192999098090 -2.7266076644574 0.0248468048232003 1 3.4996927585102 20.8154761102772 -0.290192999098090 0.119045431258258
AT1G30070_at 5.23793738818802 5.72112461598508 5.26819027713737 5.5660817395192 5.32921128773344 5.53962839442249 6.09631961022848 5.97605812363129 4.27085490018019 4.77199543465676 4.38639051145339 4.13909146666788 4.4689180059933 4.59215897483891 4.35369537314374 4.05180679261936 4.45084226491377 3.81765220095055 4.44549292498975 0.222811931191646 0.228307543001091 0.223171817434062 0.237197586853035 0.22494178358724 0.23006918440436 0.234539811009766 0.228669609541192 0.240872166246522 0.227473670166561 0.223687034816606 0.228449532425459 0.222972965017037 0.233631428282800 0.236305758951511 0.222811931191646 0.223997351650703 0.233102938475630 0.225694275235370 1 1 - 10546810 10547604 10547327.273 10546575 10548135 - gene protein_coding_gene FALSE TRUE AT1G30070.1 SGS domain-containing protein similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT1G30060.1); similar to SGS; HSP20-like chaperone [Medicago truncatula] (GB:ABC75374.1); contains InterPro domain SGS; (InterPro:IPR007699); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.272813490462359 -2.72657933796836 0.0248479197600901 1 3.49965199346713 9.9811608639881 -0.272813490462359 0.106810959745327
AT3G09820_at 9.50036948583808 9.59220790407412 8.84852584190667 8.84262137658737 8.92946004165219 9.01443937613085 9.98829905321228 10.2126721177644 9.98186358894693 9.92683104296463 10.4511297956090 10.9528568045268 9.9494790786101 10.2011620570387 11.0507640848873 9.82212287528764 9.57161045242547 10.6027657022447 9.53832556526067 0.114744676122501 0.114994012090857 0.138102803825986 0.139388443363316 0.118707474709295 0.121673086368651 0.126046519338858 0.114129566577644 0.121334732887867 0.114129566577644 0.117840434231149 0.123808298171657 0.114129566577644 0.124001197328581 0.120102132967156 0.115847041747288 0.133098569502650 0.119134145831306 0.117545931781574 3 3|0 +|/ 3013508 3014583 3014136.2 3011995 3014949 + gene protein_coding_gene FALSE TRUE AT3G09820.1|AT3G09820.2 ADK1 (ADENOSINE KINASE 1) Involved in the salvage synthesis of adenylates and methyl recycling Identical to Adenosine kinase 1 (EC 2.7.1.20) (AK 1) (Adenosine 5'- phosphotransferase 1) (ADK1) [Arabidopsis Thaliana] (GB:Q9SF85); similar to ADK2 (ADENOSINE KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G03300.1); similar to adenosine kinase isoform 2S [Nicotiana tabacum] (GB:AAU14833.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Adenosine kinase; (InterPro:IPR001805); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173) -0.202531261940813 -2.72596426969177 0.0248721415936614 1 3.49876683568312 19.4365292773388 -0.202531261940813 0.0444699701852115
AT1G07440_at 9.73634853014922 9.82076675267423 10.17419837167 10.1166638086645 10.2940261455616 10.1901963197743 10.2529255961553 10.2878481563993 9.45905945431585 10.1711794422109 9.78632743889074 9.65233659179714 10.1682235512123 9.9309793359427 9.80549025613828 10.6501058075572 10.4580719948864 9.98578681669413 9.89706449478192 0.0903076590901328 0.08712120968051 0.0890339065848194 0.08712120968051 0.0890938405854375 0.0894591132410595 0.0906044253323509 0.0871428655258759 0.105369550259980 0.0875278858058691 0.0930784472503054 0.08712120968051 0.0871515059855312 0.0922150197104284 0.0881650780039137 0.0883934103455787 0.0914912795007081 0.0963895789811151 0.0892875277328038 1 1|0 -|/ 2286506 2287356 2286905.444 2286146 2287727 - gene protein_coding_gene FALSE TRUE AT1G07440.1|AT1G07440.2 tropinone reductase, putative / tropine dehydrogenase, putative|oxidoreductase Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G29340.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|Identical to Putative tropinone reductase homolog At1g07440 (EC 1.1.1.-) [Arabidopsis Thaliana] (GB:Q9ASX2;GB:Q9LNW5); similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G29340.1); similar to Os03g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049677.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95189.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95190.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.190764831471692 2.72569269822731 0.0248828439506204 1 3.49837600870664 20.0576715540858 0.190764831471692 0.0259217633975142
AT1G72550_at 8.62046467830567 8.72554882371598 8.2571582713691 8.26405966736557 8.96537559358074 8.45572895363642 8.8450529478581 8.84897196857325 8.83652235018665 8.36564749632803 8.41497203179166 8.51656905480456 8.36718024710581 8.36927112458012 8.5365604978936 8.4451578563626 7.9977398016949 8.41730273765234 8.62617412780527 0.154161999258961 0.150141769177263 0.1681195659196 0.14896673294511 0.161608271208597 0.153874878729588 0.153742698514706 0.153524888959652 0.161178499323775 0.14896673294511 0.155127460522444 0.152916045888970 0.154876038919548 0.149995298403155 0.155365928505510 0.14896673294511 0.161756384557899 0.152096607249881 0.150369534114652 1 1|0 -|/ 27323633 27324598 27324131.111 27323350 27327699 - gene protein_coding_gene FALSE TRUE AT1G72550.1|AT1G72550.2 tRNA synthetase beta subunit family protein Identical to Probable phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase beta chain) (PheRS) [Arabidopsis Thaliana] (GB:Q9SGE9); similar to Os05g0558900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056297.1); similar to B3/4 [Medicago truncatula] (GB:ABE85094.1); contains InterPro domain B3/4; (InterPro:IPR005146); contains InterPro domain Phenylalanyl-tRNA synthetase, beta subunit archae/euk cytosolic; (InterPro:IPR004531); contains InterPro domain tRNA synthetase, B5; (InterPro:IPR005147); contains InterPro domain Putative DNA binding; (InterPro:IPR009061) -0.250391402789787 -2.72533202228288 0.0248970650997295 1 3.49785694611506 17.1190661932634 -0.250391402789787 0.0900625025582925
AT3G19660_at 6.05951372351035 6.05556504978304 5.67200103006785 5.80832444120431 5.90505363370867 5.59532525906475 4.55983365927345 4.43740252190614 4.61633430008407 4.99903583953597 4.81827046112323 5.10384516707993 4.51346464044099 5.26674674545043 4.16050689018491 4.52723380894135 4.74196085239898 4.6943534230424 4.66018730724327 0.211973371712274 0.213947376951964 0.199819520054982 0.200867080190351 0.209797310626758 0.210666850792736 0.202500644207736 0.201741331997693 0.203925737199006 0.202032176508301 0.201634215514855 0.200952139205766 0.20099254486958 0.198105979583758 0.199860965030182 0.201860618666986 0.204563887926338 0.206320178288649 0.203137507833951 3 3 - 6825685 6825838 6825743.182 6825527 6826012 - gene protein_coding_gene FALSE TRUE AT3G19660.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89770.1) 0.218437976010744 2.72504693714364 0.0249083116427590 1 3.49744666707928 10.2550358635834 0.218437976010744 0.0622806193500463
AT1G16020_at 4.90225439652424 5.02172113426195 4.46737812494269 4.62433361798063 5.2818770514634 4.3961950708622 6.32270199051571 6.4262566872093 5.03776543718311 5.52204677126048 5.96376642239783 6.0111887259605 5.87131301534144 5.67418435597143 5.25086653348698 5.54275333390347 4.83973694507233 5.32797849004389 5.29129736835488 0.248648056438150 0.236167363017372 0.237096543067033 0.253094218673001 0.241227579293513 0.251535597072202 0.240925932038262 0.237122634601998 0.252986110223389 0.239614490332621 0.236506661129563 0.236167363017372 0.24243621554879 0.259382881821306 0.244609392265806 0.236167363017372 0.253272871913651 0.246023530790709 0.237616915253174 1 1|0 +|/ 5500171 5500987 5500489.5 5498159 5501352 + gene protein_coding_gene FALSE TRUE AT1G16020.1|AT1G16020.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80910.1); similar to Os08g0427300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061842.1); similar to myrosinase precursor [Brassica oleracea] (GB:AAL67437.1); contains domain FAMILY NOT NAMED (PTHR13056); contains domain SUBFAMILY NOT NAMED (PTHR13056:SF2) -0.349633650154748 -2.72405478158973 0.0249474924315961 1 3.49601879654827 10.6023030942392 -0.349633650154748 0.15804576368804
AT3G17160_at 6.44924331396927 6.2782723984254 5.6765377367623 5.68889658558965 6.38911520299077 5.96950091864217 6.13988735061481 5.71516968349923 6.1727436599567 5.84052028042538 5.46094539565178 6.30850548263958 5.61048313300006 5.80807749395924 6.3461465209271 5.98724861710658 5.21961265699933 5.71416206353229 6.40387178072472 0.205102650639001 0.208574410706458 0.203693788102223 0.205992772177423 0.212363508445841 0.207607979385393 0.206412596635663 0.201224901344339 0.221367104649086 0.205310921265609 0.210828904797049 0.202730735785370 0.205650208096007 0.207774053161758 0.201969384942440 0.201224901344339 0.213611038085750 0.217417344978428 0.204428425199292 3 3 + 5852258 5852834 5852563.727 5852158 5853086 + gene protein_coding_gene FALSE TRUE AT3G17160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to hypothetical protein 244.t00012 [Entamoeba histolytica HM-1:IMSS] (GB:XP_650128.1); similar to Os01g0332900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042934.1) -0.273389072761447 -2.72284954883168 0.0249951724736335 1 3.49428424443031 12.0112993542347 -0.273389072761447 0.107495372407677
AT1G04640_at 8.98895220946379 9.17363279466794 8.86085747897541 8.75658481466144 9.40222009876938 8.9834710889213 9.62026229746592 9.25741077637432 9.13247220891364 9.12195345205114 8.93494064660207 8.98003330497128 8.59763987238856 9.00036598119189 9.05694656404898 8.92951437075967 8.99624185816321 8.55477706988668 9.2119687507717 0.110052777020100 0.109565877510065 0.114280631332883 0.113320166582006 0.113529571289785 0.114402631392989 0.110893930789459 0.113687767764500 0.123873960735164 0.113597992612181 0.117147883126079 0.112927111561630 0.119884052507275 0.117815357745681 0.120857410654906 0.111143721031963 0.116810093801832 0.111933581760820 0.117053509106808 1 1 + 1292669 1293210 1292886.636 1292079 1293356 + gene protein_coding_gene FALSE TRUE AT1G04640.1|AT1G04640.2 LIP2 (LIPOYLTRANSFERASE 2) Lipoyltransferase, located in mitochondria but not found in chloroplasts Identical to Lipoate-protein ligase (EC 6.-.-.-) (Lipoate biosynthesis protein) (Lipoyl ligase) (LIP2) [Arabidopsis Thaliana] (GB:Q9SXP7;GB:O23021); similar to lipoyltransferase (LIP2p) [Arabidopsis thaliana] (TAIR:AT4G31050.1); similar to Os03g0321800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049963.1); similar to PREDICTED: similar to CG9804-PA [Tribolium castaneum] (GB:XP_968499.1); contains InterPro domain Lipoate-protein ligase B; (InterPro:IPR000544); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143) -0.266719247285861 -2.72241288926320 0.0250124700658935 1 3.49365580292363 18.1488100761193 -0.266719247285861 0.102671403521842
AT3G04210_at 10.2731368944295 10.5720789767501 10.6160554580951 10.7485969758115 10.4253731503680 10.2968560272180 9.43291093738872 9.4084005941324 11.1743683081597 10.0434404692626 10.7625041225223 10.4242353336405 10.3539931360518 10.8233406814569 9.58251869565022 10.3760600090376 9.72251772207138 10.6657797214718 10.2979005653516 0.101491774949549 0.0979242211506224 0.099718044271945 0.103562571184739 0.102871506716472 0.0990387428114205 0.101634146460191 0.102652305801780 0.110576615786164 0.0995279768675345 0.102603682536997 0.098433860915034 0.100364465284593 0.103825097578574 0.113959377381155 0.0980193225185804 0.111528706784923 0.099184529717204 0.09875047859273 3 3 - 1106252 1106789 1106531.273 1105970 1108076 - gene protein_coding_gene FALSE TRUE AT3G04210.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G38340.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G14080.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G04220.1); similar to disease resistance-like protein [Brassica rapa] (GB:AAV74409.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.216860391172246 2.72193976261067 0.0250312260485608 1 3.49297487319738 20.6437286894387 0.216860391172246 0.0609513734048399
AT1G12090_at 12.6121232248113 13.0152651658627 12.8971486501528 13.0136126720188 13.1763530582209 13.2264106655825 13.1924067335603 13.3868434142079 13.4097303395207 13.3555822283689 14.1233243732314 13.8253545958700 14.1073239445124 13.8797356715838 13.6654189771175 13.6299462314274 13.3482808830117 13.783834697275 13.2714652605260 0.0826033476986198 0.0792231255656413 0.0821781792714617 0.0803578736385443 0.0792231255656413 0.0856714518476078 0.0792231255656413 0.07974913757013 0.0963859038000395 0.0827250295623957 0.0796830631529737 0.0792231255656413 0.0792231255656413 0.0836542100246295 0.0811405297430923 0.0792231255656413 0.0841131737825375 0.0876102964702465 0.0795407712268466 1 1 - 4090189 4090554 4090310.364 4089845 4090723 - gene protein_coding_gene FALSE TRUE AT1G12090.1 ELP (EXTENSIN-LIKE PROTEIN); lipid binding extensin-like protein (ELP) similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to extensin-like protein [Brassica napus] (GB:AAK30571.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.238265719582473 2.72155492467259 0.0250464926301267 1 3.49242100608786 26.6355179636649 0.238265719582473 0.08050273058239
AT4G36500_at 10.4417966486192 10.5758028918433 10.3899611955616 10.6158546329044 10.9524407123265 10.3638456760211 10.1525799675207 10.2296609464074 10.7265829417731 10.2919556605314 10.9527815649662 11.0582091643309 10.6476877038842 11.0170640379360 10.4234851429064 10.7085268080056 10.1501162861691 10.6563482098370 10.0994437398019 0.100305428706254 0.0960111177317493 0.104641930388869 0.0972054914696997 0.0970177110482607 0.10000807257575 0.097530639175479 0.0961646070409184 0.101263765004178 0.0985661015091971 0.101105113354469 0.0960111177317493 0.0962426267377065 0.0968556528347087 0.0997036898830654 0.0960111177317493 0.113774055036048 0.0994894737461372 0.099135880236608 4 4 - 17226147 17226460 17226302 17225915 17226613 - gene protein_coding_gene FALSE TRUE AT4G36500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18210.1); similar to hypothetical protein [Thellun (GB:ABB45855.1) 0.279841012329024 2.71960322300094 0.0251240634983967 1 3.48961202556141 21.0024619066288 0.279841012329024 0.11233515459423
AT4G05020_at 7.37745856843398 7.41328213580403 8.30708829943503 8.4712628103402 6.37859097113158 6.49423711715316 6.51489338119648 7.26931951856573 5.22927274772309 4.72342596419759 4.79913780036761 4.65080421843259 5.24696650699559 5.17917596255483 4.98322565910468 6.04214149513255 5.7388376283972 4.96453846670638 4.57615384842692 0.226215052071305 0.217554129644357 0.220281602597813 0.229082538284823 0.218464182877242 0.219625850056535 0.214555092404899 0.221288436963062 0.232918772801424 0.221560932200194 0.212357057613434 0.220840037426237 0.219589247476958 0.217887568674550 0.213461866212605 0.216918895293326 0.223827695520937 0.223852079637874 0.221139337641696 4 4|0 +|/ 2574876 2576147 2575404.25 2572619 2576593 + gene protein_coding_gene FALSE TRUE AT4G05020.1 NDB2 (NAD(P)H DEHYDROGENASE B2); disulfide oxidoreductase similar to NDB1 (NAD(P)H DEHYDROGENASE B1), NADH dehydrogenase/ disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G28220.1); similar to NDB4 (NAD(P)H DEHYDROGENASE B4), NADH dehydrogenase [Arabidopsis thaliana] (TAIR:AT2G20800.1); similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT4G21490.1); similar to FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Calcium-binding EF-hand [Medicago truncatula] (GB:ABD32606.1); similar to external rotenone-insensitive NADPH dehydrogenase [Solanum tuberosum] (GB:CAB52797.1); similar to Os06g0684000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058394.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.313354506138583 2.71823437452724 0.0251786150865097 1 3.48764186632716 12.3000437605878 0.313354506138583 0.135245228632185
AT3G53500_at 8.93075346064542 8.87289317614727 9.28522718384614 9.19659541548154 9.24566550691641 9.25624326460376 8.87829809666436 8.85424553730227 8.39571167839255 8.5942194827867 8.62781207782487 8.89882764903742 8.56130441076345 8.56913598565056 8.69648663324583 8.6221180499677 8.83936980325335 8.58288271351826 8.99628715269658 0.126634242396232 0.126610690247204 0.131173181419187 0.130946942292289 0.127339376551769 0.127142940735969 0.127721496368800 0.133542429014961 0.140131609596229 0.13864586639174 0.137553481597697 0.127331343723583 0.137507315089325 0.128929466292202 0.140056003652472 0.130193354942427 0.131510751063687 0.138711842171876 0.13008627284357 3 3|0 -|/ 19845543 19846500 19845873.2 19845321 19848066 - gene protein_coding_gene FALSE TRUE AT3G53500.1|AT3G53500.2 RSZ32; nucleic acid binding similar to RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33), nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G37340.1); similar to Os01g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042066.1); similar to Os03g0285900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049771.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33), nucleic acid binding / nucleotide binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G37340.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.187277334568934 2.71790479621156 0.0251917675591324 1 3.48716750424784 17.7333976735507 0.187277334568934 0.01887313047687
AT3G08940_at 13.7137560509289 13.8123401876246 13.5483632799165 13.5206179001446 13.6853406281665 13.5606264091061 14.0441092867864 14.1801897290546 14.6456171732489 14.5183328697110 14.6496831786596 14.6467192212933 14.5105819353728 14.584950561912 14.5464331479622 14.5340995436996 13.9873035516502 14.6210761733142 14.4668846205659 0.0494503088014354 0.0503476007484144 0.0510275161123236 0.0502821755176343 0.0487808733316082 0.0532182846709673 0.0498297866737188 0.0508584647419323 0.0514577885955953 0.0480685151931625 0.048290574795660 0.0480685151931625 0.0487925396934852 0.0486096320056014 0.0503818054628336 0.0482357468285514 0.058243237792375 0.0480685151931625 0.0492944027884757 3 3|0 +|/ 2717994 2718633 2718386.2 2717680 2718874 + gene protein_coding_gene FALSE TRUE AT3G08940.1|AT3G08940.2 LHCB4.2 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding|LHCB4.2 (LIGHT HARVESTING COMPLEX PSII) Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of phototystem II similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|Identical to Chlorophyll a-b binding protein CP29.2, chloroplast precursor (LHCII protein 4.2) (LHCB4.2) (LHCB4.2) [Arabidopsis Thaliana] (GB:Q9XF88); similar to chlorophyll A-B binding protein CP29 (LHCB4) [Arabidopsis thaliana] (TAIR:AT5G01530.1); similar to Chlorophyll A-B binding protein [Medicago truncatula] (GB:ABE80774.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.196183699770409 -2.7169761998838 0.0252288627743855 1 3.48583096337235 28.2850266683368 -0.196183699770409 0.0365305898881916
AT2G44180_at 8.78971099194108 9.04100931608914 9.11476903518467 8.80495158907291 8.79345696568922 8.51779276430812 7.19570907182056 7.05420441365226 8.19025062013245 7.16994571200234 7.48236146580488 7.66709896416652 6.93722551144625 7.37550045431358 7.07853663976512 7.20837133870788 7.1341313785712 7.5528257885882 7.43842124565758 0.157532523364867 0.173858813422193 0.167916100579889 0.164418606419071 0.160951334587649 0.161585724072122 0.165055292211259 0.153920443146238 0.156352161445567 0.161381372298962 0.159398413881578 0.153299355482250 0.170875379725989 0.161231628168119 0.165939084898014 0.153470070969774 0.176160363017936 0.158138280754806 0.161141252539458 2 2|0 -|/ 18276556 18277562 18276935.8 18276337 18278936 - gene protein_coding_gene FALSE TRUE AT2G44180.1 MAP2A (METHIONINE AMINOPEPTIDASE 2A); methionyl aminopeptidase Encodes a MAP2 like methionine aminopeptidase. In MAP1A mutant background plants show an increased sensitivity to fumagillin resulting in defects in development. Phenotype is similar to RNAi lines which knock out all MAP2/MAP1 loci. Identical to Methionine aminopeptidase 2A (EC 3.4.11.18) (MetAP 2A) (MAP 2A) (Peptidase M 2A) (MAP2A) [Arabidopsis Thaliana] (GB:Q9FV49;GB:O80587); similar to MAP2B (METHIONINE AMINOPEPTIDASE 2B), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT3G59990.3); similar to putative methionyl aminopeptidase (EC 3.4.11.18) F6E13.31 [Oryza sativa (japonica cultivar-group)] (GB:BAD03108.1); similar to Methionine aminopeptidase 2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22101.1); similar to methionine aminopeptidase 2 [Ananas comosus] (GB:ABB91775.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 2; (InterPro:IPR002468); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) 0.246275695130485 2.71679620531874 0.0252360595811086 1 3.48557189276872 15.8659733361037 0.246275695130485 0.0874143659111101
AT3G16840_at 6.36272998021301 6.14412560590231 5.89868057622168 5.99841781803681 5.89560891801666 5.52582131230556 6.62468844662714 5.93193699146343 5.69591195287869 6.33461132560459 5.47634963776068 6.10595491333996 6.1495595749531 6.11620378930994 5.62829209887823 6.09788664208864 6.3893720693926 5.49927181900623 6.40121096316478 0.211506609698094 0.215387549246665 0.210030730202843 0.218477057830028 0.218274164431114 0.221250213731381 0.225505429902856 0.216828652530500 0.225546158154847 0.209022629890659 0.20899338423041 0.217623602298044 0.218550791706715 0.224139733908249 0.214004819635182 0.225895675277978 0.21156925164384 0.209764103731012 0.236743903792677 3 3|0 -|/ 5738514 5739390 5738848.286 5737892 5743150 - gene protein_coding_gene FALSE TRUE AT3G16840.1 ATP-dependent helicase Identical to DEAD-box ATP-dependent RNA helicase 13 (EC 3.6.1.-) (RH13) [Arabidopsis Thaliana] (GB:Q93Y39;GB:Q94AW1;GB:Q9LRY9;GB:Q9ZS07); similar to DEAD/DEAH box helicase, putative (RH10) [Arabidopsis thaliana] (TAIR:AT5G60990.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE88833.1); similar to Os04g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053286.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.323644097848904 -2.71630114832735 0.0252558644906331 1 3.48485934162886 12.0861375720853 -0.323644097848904 0.142113902025466
AT3G24500_at 5.91100324382268 6.4939123343404 6.49829836686905 6.72454135327955 6.60564663984162 6.82615661645808 6.53308320550101 6.70527048888923 6.53114819449106 6.81587106468606 7.09623217808518 6.81976169568695 7.00036830710552 6.76717613381627 7.08153791914112 7.30411145108932 7.38952173359801 6.86452316739109 6.80372577413525 0.171072758268854 0.170982613120162 0.175343711973640 0.182910037404232 0.177533447919858 0.174173352849698 0.185679797367175 0.17678336440001 0.187553554789621 0.173079156461547 0.172369600812808 0.173461729921174 0.174560690484506 0.170453924244202 0.175059542624459 0.169956169634449 0.174505233648408 0.178697590672449 0.180996198279893 3 3 + 8918762 8919141 8918927.273 8918686 8919315 + gene protein_coding_gene FALSE TRUE AT3G24500.1 ATMBF1C/MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C); DNA binding / transcription coactivator/ transcription factor One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses. similar to ATMBF1B/MBF1B (MULTIPROTEIN BRIDGING FACTOR 1B), DNA binding / transcription coactivator [Arabidopsis thaliana] (TAIR:AT3G58680.1); similar to ethylene-responsive transciptional coactivator-like protein [Retama raetam] (GB:AAL32037.2); contains InterPro domain Multiprotein bridging factor 1, N-terminal; (InterPro:IPR013729); contains InterPro domain Helix-turn-helix type 3; (InterPro:IPR001387); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.288166244054403 2.71436286688527 0.0253335588881297 1 3.48206946395702 13.4158985732969 0.288166244054403 0.118544592975880
AT2G16600_at 12.4902817379178 12.5493307782996 12.4206305557027 12.4862815358822 12.4735566871935 12.0546555754054 12.0471155387846 11.9923665818296 11.6720225038905 11.3595739166612 11.8173203727984 11.8767853560020 11.5268659570309 11.7439661488374 11.7854782135343 11.5391661342833 11.6468638638972 11.7151905616503 10.9695392775297 0.087415475897656 0.0852120505359119 0.0865058027549697 0.0860493682001674 0.0897425928256197 0.0892934429640486 0.0870614385652752 0.0849139561500247 0.0897966205546872 0.0900286986287835 0.0873656480930607 0.085185361026761 0.0856476644467656 0.0860664272599024 0.0866766963952541 0.0857757742648339 0.0906356374220062 0.0896569109755977 0.091436554114341 2 2 + 7207947 7208419 7208140.545 7207889 7208656 + gene protein_coding_gene FALSE TRUE AT2G16600.1|AT2G16600.2 ROC3 (rotamase CyP 3); peptidyl-prolyl cis-trans isomerase|ROC3 (rotamase CyP 3) Encodes cytosolic cyclophilin ROC3. Identical to Peptidyl-prolyl cis-trans isomerase CYP19-1 (EC 5.2.1.8) (PPIase CYP19-1) (Rotamase cyclophilin-3) (Cyclophilin of 19 kDa 1) (CYP19-1) [Arabidopsis Thaliana] (GB:Q38900); similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to cyclophilin [Thellun (GB:AAR27291.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.230875052990898 2.71431363182494 0.0253355356098228 1 3.48199859617289 23.8343606115593 0.230875052990898 0.0746891639686444
AT4G00755_at 5.3319328284023 5.43694569375419 5.00083671211841 4.55796181160224 6.45929097049584 5.7231417423762 6.92551385650632 7.02138988302702 6.91797457971255 6.33823439617595 7.14195676608335 7.19148812914225 6.83966806064769 6.85524205378887 6.91210391570761 6.4661513149272 6.19443693640188 6.29273680431024 6.74151605216752 0.238969902910204 0.233864036936484 0.228304917980942 0.226245861714499 0.222073217590714 0.227079897654690 0.229055835859701 0.217972622373015 0.221781063924217 0.220141503257386 0.227910014604149 0.224123893908734 0.229392563687016 0.228086436624163 0.221339358781068 0.214533839294729 0.232508688762975 0.221173299097188 0.225119477840365 4 4 + 326010 326713 326341.091 324982 327008 + gene protein_coding_gene FALSE TRUE AT4G00755.1|AT4G00755.2 F-box family protein similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE88268.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.336411550666742 -2.71150569194364 0.0254485316274134 1 3.47795683419081 12.5084423574410 -0.336411550666742 0.150694126997841
AT4G15470_at 10.7106837046156 10.8998195525498 10.8951068566295 11.0293632056271 10.7398287670502 10.7018853040679 10.6070308628969 10.7884247213123 10.2384890485443 10.0580937444018 10.4771191231973 10.4358849360167 10.4822721344847 10.4791808298528 10.3612109781090 10.5052066212979 10.1410217968049 10.4721416275969 9.98870834857956 0.0909595648436134 0.0914171035430717 0.0969977435944286 0.091242891297161 0.092079590083548 0.0986075826946484 0.0930706003135705 0.0921636208005738 0.0958269084466267 0.0986671564400485 0.0977117296530367 0.0909595648436134 0.0935625714082729 0.0935926920139735 0.0926821228929225 0.091818610026487 0.0972776022615902 0.0909595648436134 0.0999398300995725 4 4 + 8843835 8845441 8844935.091 8843565 8845808 + gene protein_coding_gene FALSE TRUE AT4G15470.1 similar to glutamate binding [Arabidopsis thaliana] (TAIR:AT1G03070.1); similar to Os05g0402300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055493.1); similar to putative receptor associated protein [Capsicum chinense] (GB:CAI53895.2); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.207107015872413 2.71119888598283 0.0254609091330887 1 3.47751520687138 21.0536937733913 0.207107015872413 0.0513772963408505
AT1G28510_at 7.55719533236911 7.56329425576913 7.67896681278055 7.48200351638633 7.02432467514442 7.07473033384418 7.76278345141952 7.4053193199682 7.04883642169336 6.32916857176459 6.36296473901869 6.59456303180119 6.14115654218154 6.13067768979346 6.5880203670423 6.2484103165333 6.50915587144326 6.48661255172612 6.35788395978541 0.190933947888021 0.190060778731163 0.187058940801000 0.189388460121945 0.190574741321697 0.190654929646122 0.191007515841898 0.19099803620984 0.189702135523910 0.201099083507039 0.189674392540760 0.187673508189828 0.189788022164579 0.189577362254779 0.188777331020837 0.188180255347135 0.187987729191353 0.186086702349501 0.191977745784648 1 1|0 +|/ 10024033 10025873 10024612.6 10023862 10026281 + gene protein_coding_gene FALSE TRUE AT1G28510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58150.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81625.1); similar to Os01g0242300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042554.1); contains InterPro domain Optic atrophy 3; (InterPro:IPR010754) -0.226538133865629 -2.70943655328937 0.0255321262441544 1 3.47497840798014 13.9242396070970 -0.226538133865629 0.0711743080403316
AT4G27080_at 6.29668650706899 6.45028984316772 5.46879565221687 5.50713536059189 6.43276875966576 5.88763811365844 6.53121642613018 6.21246542550998 5.93816974906266 5.65614807605802 5.59058280033689 6.70642901154223 5.47673579205563 6.21413423243346 6.47726673104994 5.37402727224622 4.366694468823 5.26910229563347 5.4883257994651 0.236075031344711 0.231363876722588 0.242667972331797 0.235762448523051 0.239357984080773 0.232008952852858 0.236296500360049 0.238254132478898 0.249730132420097 0.234500617933997 0.231363876722588 0.235005502323664 0.234635433886973 0.244737244649226 0.241922731171122 0.231363876722588 0.252360819640844 0.236605069297655 0.236029592057690 4 4|0 +|/ 13592537 13593288 13592888.25 13589078 13593555 + gene protein_coding_gene FALSE TRUE AT4G27080.1 ATPDIL5-4 (PDI-LIKE 5-4); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL5-3 (PDI-LIKE 5-3), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G20560.1); similar to thioredoxin-related [Arabidopsis thaliana] (TAIR:AT1G50950.1); similar to Thioredoxin, putative [Medicago truncatula] (GB:ABE91160.1); similar to Os07g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059821.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09970.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) -0.279211522474732 -2.70899652545604 0.0255499397838325 1 3.47434499841738 11.7876675695231 -0.279211522474732 0.112662911056939
AT3G07670_at 9.0324297849809 8.90505516757652 8.75537920635885 8.67450976744155 8.80181307251534 8.66668736566286 9.03089248498011 8.89763997399167 8.70790133068681 8.89683790318873 8.37241763288404 8.75241004044495 8.48444279322281 9.01646411334964 8.9532910323278 8.9246111251238 8.61347055001286 8.29175086368384 8.89390213128861 0.127329631773106 0.125774850922407 0.129284325698671 0.130382479619511 0.125072614682661 0.137455986567564 0.124788185034378 0.132026606530438 0.132042837545162 0.127213245940812 0.135902038016875 0.128062263330822 0.126861003065047 0.127438685124069 0.125848034623806 0.123349610887093 0.126293775900594 0.134183366785385 0.130249259299575 3 0|3 /|+ 2453923 2454584 2454258.778 2451614 2454866 + gene protein_coding_gene FALSE TRUE AT3G07670.1 SET domain-containing protein similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G14260.2); similar to Os02g0725200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047982.1); similar to N-methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL55476.1); contains InterPro domain Rubisco methyltransferase; (InterPro:IPR011192); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.199340093030575 -2.70851661007561 0.0255693825452294 1 3.47365416752376 17.6000447149064 -0.199340093030575 0.0419561557467793
AT1G02150_at 9.80869930236125 9.8825291797232 9.47926533955973 9.40863395466393 9.88373630129811 9.52943637217718 10.1628800927614 9.80303508044485 9.81595331571235 9.83410629882993 9.5136758659327 9.93308434308193 9.52947268316825 9.44534658474371 9.93525967445504 9.66090944012986 9.58156193042812 9.560607914233 9.75322055424254 0.107531922062209 0.106188816650604 0.106906049670044 0.106069912150381 0.106553783681493 0.106487699993714 0.107264564643375 0.112127710634975 0.111386543534145 0.111249730095124 0.113451919146785 0.105146109191376 0.109348195060419 0.111813188659994 0.109081045004566 0.110804567317199 0.108407374179176 0.114479740797046 0.109367018389103 1 1 + 409836 410397 410061.182 408622 410611 + gene protein_coding_gene FALSE TRUE AT1G02150.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G02820.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD28679.1); similar to Os12g0527900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066910.1); similar to Os04g0544400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053460.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.247560753485652 -2.70687369674189 0.0256360561345453 1 3.47128918624179 19.4678185499320 -0.247560753485652 0.0891620413596808
AT4G05460_at 5.93135347781959 5.97541883916225 5.78449828056267 5.83988136348983 6.1457150397531 6.23502419016855 4.74930023204392 5.46337482922015 4.17842337822755 4.76540640033318 4.90857622472132 5.03045134674447 4.93399620801082 4.7339981653514 4.57422081343229 5.02766170769808 5.08082320534013 4.14404266111122 5.10164661721734 0.231337759955961 0.232182668805963 0.230234745606053 0.232205375841922 0.23655628773229 0.233792091975931 0.228780038423564 0.231582157219276 0.244426458244557 0.229603209014312 0.239842009662288 0.237559641272167 0.234240302406265 0.23678250654959 0.253858576881370 0.23091228648383 0.231850891393077 0.237902060598049 0.232774822482113 4 4 - 2761113 2762058 2761393.545 2760878 2762442 - gene protein_coding_gene FALSE TRUE AT4G05460.1 F-box family protein (FBL20) similar to F-box family protein (FBL22) [Arabidopsis thaliana] (TAIR:AT4G05490.1); similar to Os02g0317300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046671.1); similar to Os08g0193900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061182.1); similar to N7 protein [Medicago truncatula] (GB:CAA76808.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.296906850111961 2.706343279616 0.0256576196774035 1 3.47052563772319 10.5085941599328 0.296906850111961 0.125137513018895
AT3G52380_at 9.36978585431169 9.38568821758945 9.01408083277952 9.29056936542447 9.3783865569957 9.14341142156081 10.2307515794985 10.2168183009598 9.72073285759188 9.87064607125368 9.8029293497715 10.2242851934846 9.62387107369042 9.81403401634885 10.4149006754961 9.52508896381574 9.66396098617073 9.64464787788038 9.4474003231968 0.11731915564257 0.119173803566428 0.121532288940533 0.112863883483588 0.109055378281897 0.126878579156785 0.112824276623787 0.121517089604184 0.124742461332158 0.115669483209547 0.116408159838623 0.112657840423354 0.108891026425490 0.109164627261007 0.111070321631407 0.112435707055893 0.124885999063457 0.117489706754817 0.108891026425490 3 3|0 +|/ 19433005 19433779 19433528.4 19432375 19434075 + gene protein_coding_gene FALSE TRUE AT3G52380.1 CP33 (PIGMENT DEFECTIVE 322); RNA binding chloroplast RNA-binding protein similar to RBP31 (31-KDA RNA BINDING PROTEIN), RNA binding [Arabidopsis thaliana] (TAIR:AT4G24770.1); similar to 33 kd chloroplast ribonucleoprotein [Nicotiana sylvestris] (GB:CAA41253.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.217263630415781 -2.70265278902907 0.0258081659764597 1 3.46521294539901 19.2630904416882 -0.217263630415781 0.0628991796242466
AT4G00440_at 4.45023652770147 4.55623130282576 4.35808040397932 4.4132195284272 5.05160218728551 4.77247416370845 5.56968283817563 5.44517771899381 4.31093794254997 4.44486623114974 5.54382462393132 5.03692305343254 5.44179446234109 5.5401396010899 5.33726780526414 5.28067822336999 5.50331915216644 5.80795206643824 5.21653370901941 0.222738374178765 0.219035596811807 0.220850916460336 0.217923565999314 0.220995943093608 0.222807609971456 0.212777160710664 0.217849195305869 0.237242882842231 0.215616067028075 0.214914569898843 0.21581967071675 0.220351675998213 0.215505389481112 0.218027925474355 0.212777160710664 0.235737033520059 0.212777160710664 0.212777160710664 4 4 + 197541 198048 197817.545 193879 198579 + gene protein_coding_gene FALSE TRUE AT4G00440.1|AT4G00440.2|AT4G00440.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45900.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91371.1); contains domain PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT P (DOWN SYNDROME CRITICAL REGION PROTEIN 5)-RELATED (PTHR21726); contains domain RNASE H1 SMALL SUBUNIT (AYP1)-RELATED (PTHR21726:SF4) 0.211276693261891 2.70198762102195 0.0258353959208868 1 3.46425536885267 9.87405475109243 0.211276693261891 0.0567896733327654
AT4G01050_at 11.0756571331840 11.1844013571256 10.7152773461625 10.7329807514022 11.1229259543228 10.7869875195575 11.5293211895665 11.5226271884612 11.6837845904464 11.7520934082177 11.9249924680614 11.9797470369452 11.7138492953288 11.6624986480847 11.8768431191731 11.8113887954334 11.3451963691727 11.6812128838698 11.6399000575972 0.073818585108132 0.0714132829869305 0.0727065067804659 0.0731192785822253 0.0721682752268405 0.0746017894946389 0.0723579898232518 0.0711648630154467 0.073344572921311 0.0764786278570174 0.0736344012058858 0.0708293205858658 0.070644500253599 0.0772950808651046 0.071942552371654 0.0701360325742605 0.0723016948207311 0.0700832762071675 0.0705993309210614 4 4 + 457161 457906 457595.727 455768 458510 + gene protein_coding_gene FALSE TRUE AT4G01050.1 hydroxyproline-rich glycoprotein family protein hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Identical to Putative protein At4g01050 [Arabidopsis Thaliana] (GB:Q9M158;GB:O04623;GB:Q93VZ2); similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G25480.1); similar to Os02g0257300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046473.1); similar to rhodanese domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82378.1); similar to Os01g0889800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045047.1); contains domain CHITINASE (PTHR11177:SF3); contains domain Rhodanese/Cell cycle control phosphatase (SSF52821); contains domain CHITINASE (PTHR11177); contains domain no description (G3D.3.40.250.10) -0.215459382984107 -2.70136078976844 0.0258610833045882 1 3.46335297494943 22.804468352854 -0.215459382984107 0.0611934011797708
AT3G27740_at 6.88293755699485 7.07607428806729 5.94388814819763 6.6751060119056 6.47031761070007 6.31822781893171 7.29427522777162 7.3068173704818 6.10230477024557 6.24269725793041 6.10785592218637 6.70189983231362 6.56608805016406 6.2071515396914 6.93543725605601 6.24668694840282 6.4273389780169 6.32280732674577 6.46133790086637 0.206134768419642 0.198286977147062 0.203486925850537 0.195263648857353 0.189782289853158 0.204634058337171 0.194658433914276 0.205346682174767 0.203233382759552 0.198793312240507 0.198903794249069 0.189782289853158 0.195872778075417 0.197819679551245 0.199245840068237 0.189782289853158 0.213645618544455 0.204403003776233 0.196012106901677 3 3 - 10282899 10283511 10283288.727 10282498 10285103 - gene protein_coding_gene FALSE TRUE AT3G27740.1|AT3G27740.2 CARA (CARBAMOYL PHOSPHATE SYNTHETASE A); carbamoyl-phosphate synthase (glutamine-hydrolyzing)|CARA (CARBAMOYL PHOSPHATE SYNTHETASE A) carbamoyl phosphate synthetase small subunit mRNA (carA), similar to ASB1 (ANTHRANILATE SYNTHASE BETA SUBUNIT 1), anthranilate synthase [Arabidopsis thaliana] (TAIR:AT1G25220.1); similar to putative carbamoyl phosphate synthase small subunit [Nicotiana tabacum] (GB:CAC85725.1); similar to Carbamoyl-phosphate synthase, GATase re (GB:ABE82026.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Carbamoyl-phosphate synthase, GATase region; (InterPro:IPR001317); contains InterPro domain Carbamoyl-phosphate synthase, small subunit; (InterPro:IPR006274); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998); contains InterPro domain Anthranilate synthase component II/delta crystallin; (InterPro:IPR006220); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702); contains InterPro domain Carbamoyl-phosphate synthase, small chain; (InterPro:IPR002474) -0.308756479022733 -2.70090622358106 0.0258797276095748 1 3.46269857172427 13.1000496081536 -0.308756479022733 0.133518146675402
AT3G51840_at 10.8450867319122 10.9608333366611 11.2583718446169 11.3726509453033 11.6556185507812 11.4436420079974 10.8396288891818 10.7404593145301 10.761641199049 10.7197557735481 10.4973664055221 10.3477347890390 10.7747738269773 10.5693298221028 10.1688500437419 10.6999695318063 10.8858999917962 10.650153301993 10.7723858599304 0.0868773277052427 0.0824643023190544 0.0885902199990537 0.0895504556335811 0.0860079323790268 0.0865835861346 0.0849734585523777 0.082795624086538 0.0888745433212126 0.0857725342896228 0.0917579258531212 0.085198447449605 0.0843399266968657 0.0832149763919553 0.0871771914946254 0.0831374195051654 0.0878918086600766 0.0840672753118316 0.0824643023190544 3 0|3 /|- 19236639 19237718 19237329.5 19236337 19240140 - gene protein_coding_gene FALSE TRUE AT3G51840.1 ACX4 (ACYL-COA OXIDASE 4); oxidoreductase Encodes a short-chain acyl-CoA oxidase, which catalyzes the first step of peroxisomal fatty acid beta-oxidation during early, post-germinative growth in oilseed species. Null mutants virtually lack short-chain acyl-CoA and are resistant to 2,4-dichlorophenoxybutyric acid, which is converted to the herbicide and auxin analogue 2,4-dichlorophenoxyacetic acid by beta-oxidation. Despite the almost complete loss of short-chain activity, lipid catabolism and seedling growth and establishment was unaltered in the acx4 mutant. However, double mutants in acx3acx4 (acx3 encodes medium chain acyl CoA oxidase) were not viable and arrested during embryogenesis. Identical to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6) (ACX4) [Arabidopsis Thaliana] (GB:Q96329); similar to IVD (ISOVALERYL-COA-DEHYDROGENASE) [Arabidopsis thaliana] (TAIR:AT3G45300.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08201.1); similar to putative short-chain acyl-CoA oxidase [Tropaeolum majus] (GB:AAT11172.1); similar to Os01g0159400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042084.1); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase, N-terminal; (InterPro:IPR006092); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase; (InterPro:IPR006089); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type 1; (InterPro:IPR006090); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.204533769524959 2.7004299240415 0.0258992780345474 1 3.46201287693021 21.8022967817721 0.204533769524959 0.049320776101173
AT1G49975_at 6.25705976451761 6.78816494397545 5.86376478214681 5.936494227991 7.0239631419283 6.272556788273 6.64338164337668 6.61617464779848 5.70654174619827 6.53851564262834 7.75689886665662 7.65317573478089 7.59802935073775 7.49450639032441 7.85552812625833 7.78662831460157 5.98889902682014 6.33578086953698 6.67870046901167 0.220292965274012 0.226227389563156 0.229895178538887 0.219273461656757 0.225080756827242 0.249013932477858 0.218152138827227 0.218810006348711 0.257963992536353 0.224233523754715 0.224504481131053 0.214965696184337 0.224411327259381 0.226914516454277 0.23349649896345 0.214965696184337 0.230906436689434 0.249486620426725 0.221191576099732 1 1|0 +|/ 18508515 18508688 18508603.1 18508470 18509265 + gene protein_coding_gene FALSE TRUE AT1G49975.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT77883.1); similar to Os03g0731100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051164.1) 0.349380517093108 2.70036891607437 0.0259017832859437 1 3.46192504779301 13.2334950529563 0.349380517093108 0.159803029375794
AT3G57800_at 5.25757327643593 5.47667796310160 4.45379821667217 4.6890977379442 5.60556665785848 5.47625633212954 5.40093545150126 5.19958371838115 6.62013094055491 5.6844927020565 7.03911373040602 6.41595863140986 5.63504126078012 6.3891380586977 5.63573907215006 5.78004454751902 5.03320468397258 6.14605025285961 6.23348626374283 0.214179352088342 0.209929486304216 0.215050830759917 0.211160068549191 0.206945730670344 0.214579340125467 0.208716965917234 0.211901899695952 0.211469188527834 0.214526699921747 0.209417987732250 0.205270475575172 0.203851209743044 0.213866162538431 0.218124953001233 0.203851209743044 0.218797290313281 0.208506308038675 0.210832704555408 3 3 - 21419033 21419247 21419152.818 21418766 21422698 - gene protein_coding_gene FALSE TRUE AT3G57800.1|AT3G57800.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42300.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94659.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.223798277632134 -2.70022873760916 0.0259075405576585 1 3.46172324188554 11.2892642935076 -0.223798277632134 0.0693593958765742
AT1G17760_at 5.29584592436701 5.54496029084483 5.03052382302323 5.05971448175473 5.68939220653963 5.20261308825674 5.40980640257955 5.75030912102724 5.22092494580149 5.06460393535342 4.9356633368077 4.73513303857685 5.06169378918901 4.89652169346771 4.44124138482046 5.27053049069371 4.7642120272554 4.93133216478216 5.24932430992176 0.204132373103514 0.211540353614147 0.214816096766254 0.214914070796230 0.209625766173708 0.209132699797851 0.205293222235035 0.212508726246589 0.204021420151922 0.216431321890271 0.204764437708845 0.201425502203592 0.204700406966603 0.208123990171659 0.213345596410736 0.208126897797344 0.206664209524316 0.205849684281094 0.205646525120256 1 1|0 -|/ 6110208 6110967 6110616.7 6110100 6116610 - gene protein_coding_gene FALSE TRUE AT1G17760.1 ATCSTF77/CSTF77 (Cleavage stimulation factor 77); binding Encodes a homolog of the mammalian protein CstF77, a polyadenylation factor subunit. similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT1G04080.1); similar to Os12g0571900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067088.1); similar to Protein prenyltransferase [Medicago truncatula] (GB:ABE83717.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Suppressor of forked; (InterPro:IPR008847); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.276706470568755 -2.69927675627857 0.0259466739514966 1 3.46035272695344 10.4018083611615 -0.276706470568755 0.111590885093530
AT4G02620_at 10.2061432810410 10.1912019334780 10.3224798379141 10.4370941043164 10.4517245382076 10.1283570467683 10.4087357304396 10.4984379757006 9.96081186477052 9.97443290516747 10.4532711731431 10.3929489887326 10.0991674472979 10.4426495332779 10.3189965951064 10.0681867335218 10.2627320201321 10.3475408122245 9.6929429006222 0.116504419862998 0.107007411720196 0.111504767370688 0.109795432660790 0.111836493553019 0.110777313538566 0.114730016219936 0.109567326586045 0.115333934005032 0.106176769240080 0.106176769240080 0.113174698621166 0.110467987622589 0.113243119492030 0.113795736376762 0.110887959358980 0.112748013050492 0.106428235773804 0.111292630388721 4 4|0 -|/ 1149436 1151107 1149990.444 1149248 1151346 - gene protein_coding_gene FALSE TRUE AT4G02620.1 (VACUOLAR ATPASE SUBUNIT F); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism Identical to Probable vacuolar ATP synthase subunit F (EC 3.6.3.14) (V-ATPase F subunit) (Vacuolar proton pump F subunit) (V-ATPase 14 kDa subunit) (VATF) [Arabidopsis Thaliana] (GB:Q9ZQX4); similar to Os02g0824700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048577.1); similar to putative vacuolar ATP synthase subunit F [Musa acuminata] (GB:ABC60334.1); similar to Os04g0137500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052104.1); contains InterPro domain ATPase, V1 complex, subunit F, eukaryotic; (InterPro:IPR005772); contains InterPro domain ATPase, V1/A1 complex, subunit F; (InterPro:IPR008218) 0.215454128856468 2.6984695163424 0.0259799046610678 1 3.45919057639316 20.4176464158747 0.215454128856468 0.0614216570880845
AT2G47840_at 6.07947059911895 6.38113221752557 5.34793019196296 5.27120794626674 6.11586650018004 6.11595262158426 6.62747324525278 7.0568656406098 6.62182516203605 6.13133432695643 6.70139931860081 6.84940518699431 6.43484124302821 7.00758918151312 7.15719419361657 6.51345320680285 6.103071536246 6.1363150210964 6.11488499617996 0.181539404337301 0.170146244154804 0.17019465789461 0.180004662265945 0.169249022305126 0.176292750281566 0.171265849077418 0.169249022305126 0.173520805762802 0.174386001891709 0.169249022305126 0.172347874256651 0.169249022305126 0.173353642568318 0.169249022305126 0.172232621978203 0.179370244760403 0.179067592272984 0.169249022305126 2 2 - 19601402 19601794 19601575.182 19601257 19602071 - gene protein_coding_gene FALSE TRUE AT2G47840.1 tic20 protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G55710.1); similar to Os02g0726600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047992.1); similar to Profilin (ISS) [Ostreococcus tauri] (GB:CAL54954.1) -0.249967830682567 -2.69708662909709 0.0260369333044722 1 3.45719966493296 12.5756157566684 -0.249967830682567 0.0917783579520319
AT3G56690_at 5.30696993933615 5.70755501059335 5.27231308687855 4.7573835763673 4.67506384648690 5.46063484114315 5.32010860099263 4.99897621982672 4.02248236991433 4.65009370788762 3.83761175714524 3.69881062424039 4.12114380816664 3.78070539077382 3.83745295343121 4.22016491367158 4.4097390641057 3.9172307813743 4.72499442898284 0.226859311618342 0.216036398564038 0.223572329947597 0.218015668262415 0.228243529788593 0.228748100033552 0.217134650838788 0.218666463975867 0.228209041230809 0.23071479790441 0.223187452573041 0.214497838491956 0.222707286876964 0.224779036666435 0.233625026378922 0.217151210154405 0.214918246978565 0.221360636800134 0.216456990836221 3 3|0 -|/ 21004866 21005758 21005378.625 21004672 21009674 - gene protein_coding_gene FALSE TRUE AT3G56690.1 CIP111 (CAM INTERACTING PROTEIN 111); ATPase/ calmodulin binding encodes a protein similar to ATPases and binds to calmodulin in vitro. This is a single-copy gene and is expressed in all tissues examined. similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to ATPase, AAA family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92097.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.39002651447478 -2.69652455483924 0.0260601490694539 1 3.4563904504968 9.40923276380736 -0.39002651447478 0.185246800684123
AT3G05570_at 4.71088036850275 5.2412760760377 5.26182602107717 5.27474420878207 5.42220462015533 4.92488461762936 4.46961967553765 4.25509912528392 4.3729500682167 4.4882893247575 4.8202162971053 4.4359431483441 4.455724540566 4.69488138939508 4.26200777743224 5.12170660500651 4.01574383915339 4.61271836626219 4.62225316989816 0.220372535870301 0.219591941965977 0.225536322585558 0.221000764550316 0.220149054532509 0.239622133408576 0.220938848947908 0.223792499281471 0.220561665677055 0.224469658326455 0.218486823840157 0.21726424729573 0.215901427430491 0.222759738106279 0.215901427430491 0.222791870995362 0.239821713036298 0.218310511363577 0.220580090740508 3 3 - 1616279 1616617 1616437.7 1616108 1617345 - gene protein_coding_gene FALSE TRUE AT3G05570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39235.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05323.1); similar to Os03g0724500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051122.1) 0.304783140010566 2.69638923472125 0.0260657414483842 1 3.45619563029867 9.46849947230852 0.304783140010566 0.131206108550937
AT4G27600_at 9.44843187175221 9.59439434682402 9.27412594117222 9.29160307125632 9.7487977887273 9.50981938550964 9.87830453836244 9.68544291417335 9.82376189779769 9.69818299177598 9.62644831803838 9.74483699769892 9.60405032743856 9.3402361101686 9.7325564412107 9.63203252760971 9.4987708791478 9.48806201263055 9.91858455914355 0.109933510537846 0.108670450044676 0.110564479957227 0.116401872312624 0.110066738566084 0.110215840400132 0.109014423377409 0.109888897613171 0.113731022726424 0.109535991496543 0.110053571264131 0.111399717825387 0.105694810121781 0.124862202811006 0.115987444541485 0.105694810121781 0.116890231621775 0.109091899541180 0.110287206887812 4 4 - 13782781 13783519 13783088.455 13782521 13785118 - gene protein_coding_gene FALSE TRUE AT4G27600.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT1G19600.1); similar to carbohydrate kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66284.1); similar to Os10g0573000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065468.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.212846242803899 -2.69630945395765 0.0260690391241819 1 3.45608076989987 19.2523069912132 -0.212846242803899 0.0589191479289217
AT3G57090_at 9.54140204949835 9.49308719289112 9.72452601451347 9.6739507311793 9.60730825126606 9.5239252288844 8.90492421199387 9.17309496480132 9.09468935416931 8.90661692629308 8.90022248622186 8.81527322310045 9.20445380515676 9.15979314982392 8.64709652491627 9.07799154073527 9.00414525585328 8.8424945118921 8.70247856628907 0.0919231374584114 0.0936440138608047 0.092062218385592 0.0908952807010477 0.0894613196137133 0.0949758070090818 0.0891407233919664 0.0959979671517016 0.100933589556431 0.0940990475983518 0.0937002823348497 0.0903333354909618 0.087619513262176 0.0922600637483174 0.0960626101434871 0.0875075606570395 0.0967009073617177 0.0914237628517388 0.0911614930153141 3 3|0 +|/ 21139628 21140917 21140352.6 21139509 21141168 + gene protein_coding_gene FALSE TRUE AT3G57090.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G12390.1); similar to Tetratricopeptide repeat protein 11, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96021.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.204736324146656 2.69462698441402 0.0261386818921712 1 3.45365849432349 18.3841250445266 0.204736324146656 0.0500844431717732
AT3G46780_at 11.6400645315041 11.5506416645184 11.0525268749178 10.9008863968820 11.7058584027218 11.3184505837156 12.4361144771396 12.2269378918693 12.2263210186225 12.2182743214596 12.6754874438099 12.5216439839710 12.2709908167788 12.4520488163047 12.5467939600315 12.4545257904634 12.0812026578518 12.5045708611572 12.1394820423867 0.0734476622919763 0.0724862367717916 0.0739460710319351 0.077883002198097 0.0722163692064766 0.0783052933761472 0.0712776602142502 0.072416301254812 0.0829597302820725 0.0719411439783911 0.0711307006699473 0.0730775827272406 0.0711574191016829 0.075650183259469 0.0726915313851558 0.0715494596290126 0.0855075660297172 0.0781059101198937 0.0717024267398012 3 3|0 +|/ 17240092 17240878 17240638.8 17239658 17242186 + gene protein_coding_gene FALSE TRUE AT3G46780.1 PTAC16 (PLASTID TRANSCRIPTIONALLY ACTIVE18) similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT3G18890.1); similar to Os05g0291700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055100.1); similar to Tic62 protein [Pisum sativum] (GB:CAC87810.2); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720) -0.237646748112733 -2.69343615840632 0.0261880886261229 1 3.45194401831291 23.9204853539681 -0.237646748112733 0.0820561906747292
AT1G52160_at 5.0619564195335 5.97972346660792 5.50582549752187 5.53093667795954 4.957389671057 4.62755886705504 5.19342514718671 5.06023979586482 3.9596717162889 4.61053691505464 3.79737601140430 3.24681556981931 3.64949793354616 3.61137092537957 4.08579684910213 4.35851824261071 4.06235839727436 4.13341079759049 4.72085365343989 0.236305002694547 0.23427023626319 0.227599676185426 0.231777515751548 0.230334779663041 0.246497414313534 0.227599676185426 0.227599676185426 0.247284103893519 0.236781738828111 0.232941803499998 0.237221587193108 0.227933346151964 0.236112381299428 0.229679307883396 0.227599676185426 0.235615778535516 0.230446515851217 0.233830426778208 1 1 - 19424666 19425201 19424909.455 19424387 19428108 - gene protein_coding_gene FALSE TRUE AT1G52160.1 metallo-beta-lactamase family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G16260.1); similar to unnamed protein product; gb|AAF29402.1 gene_id:MYA6.7 strong similarity to unknown protein-related [Medicago truncatula] (GB:ABE80923.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) -0.365309766493402 -2.6927483983986 0.0262166667976377 1 3.45095381502413 9.38888053573265 -0.365309766493402 0.170391068599614
AT4G37300_at 10.5112836901289 10.5322048529473 10.0560053385995 10.1043341993805 10.9845106565569 10.6558461900284 10.7466789244305 10.7653167098272 10.9751483922515 11.1831744495084 11.0842018366536 10.9084419769565 10.9526788546753 10.8638674139312 10.8435297238048 10.7803373028158 10.6115885621215 11.0029432344173 11.1865403449133 0.085311219940436 0.0848840083250927 0.0926414371478717 0.0869210197515139 0.08540598266132 0.0931990947045692 0.0846135634635147 0.0838903674136504 0.0917803874566518 0.0836929676356773 0.0842489531355567 0.0836929676356773 0.0836929676356773 0.089364082769072 0.0853122621834182 0.0836929676356773 0.0931749950867852 0.0887670053260135 0.0836929676356773 4 4|0 +|/ 17554804 17555398 17554981.6 17554635 17555855 + gene protein_coding_gene FALSE TRUE AT4G37300.1 MEE59 (maternal effect embryo arrest 59) similar to Os05g0451300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055707.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95142.1); similar to Os03g0265900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049653.1) -0.211351365288918 -2.69212579158865 0.0262425651152191 1 3.45005740995308 21.5424740746023 -0.211351365288918 0.0576926648345235
AT2G24570_at 4.6543969103051 5.20742700484893 5.59187239722777 6.00844915562017 4.92055668220421 5.23486047795541 5.32724407227292 5.79872102446942 4.43719780396523 4.59135948504927 4.40804414181241 4.71753559686898 4.91911155833421 4.23658966116813 4.74924587060795 5.59978334284672 5.7460588554228 4.76139814472564 4.18231468040653 0.225279294688895 0.216577920328447 0.219454934261545 0.220834476598460 0.216894779718741 0.219637058696901 0.217575338031707 0.221809724743688 0.240291352208075 0.222130414382591 0.221383216727347 0.215250367327323 0.219152460725551 0.217388234735160 0.214349347357000 0.217893149790466 0.223875264254380 0.227207858256924 0.228019243516627 2 2|0 -|/ 10444779 10445853 10445484.7 10444477 10446377 - gene protein_coding_gene FALSE TRUE AT2G24570.1 WRKY17 (WRKY DNA-binding protein 17); transcription factor member of WRKY Transcription Factor; Group II-d; negative regulator of basal resistance to Pseudomonas syringae. Identical to Probable WRKY transcription factor 17 (WRKY DNA-binding protein 17) (WRKY17) [Arabidopsis Thaliana] (GB:Q9SJA8;GB:Q93WV1); similar to WRKY11 (WRKY DNA-binding protein 11), transcription factor [Arabidopsis thaliana] (TAIR:AT4G31550.1); similar to WRKY transcription factor 11 [Capsella rubella] (GB:AAS66778.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) 0.340292165972068 2.69070663756079 0.0263016946275219 1 3.44801414554414 9.99086340875317 0.340292165972068 0.154828891997965
AT3G09570_at 7.49116550785621 7.87310123111383 7.44156229357645 7.79470868201966 7.94448329263723 7.47140547627478 7.27327818137204 7.66207514063142 6.75309620531146 6.2472560457392 7.05406829187933 7.22503022662469 7.068587621804 7.25755590691102 7.33389601622785 7.09466153607966 6.99266960190761 6.94978080905133 6.73478725889926 0.199857053254312 0.196977822686431 0.205551000962654 0.203594884510265 0.210332165985318 0.198697836379329 0.196907929090549 0.193706490689409 0.214561388396292 0.205062822130183 0.20440018859127 0.198458040821567 0.198726651769781 0.200107596520529 0.202034086148378 0.196572428364092 0.200837098519367 0.203697782262148 0.199320089493559 3 3 + 2941269 2941808 2941501.182 2940451 2942114 + gene protein_coding_gene FALSE TRUE AT3G09570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18520.1); similar to Os01g0836800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044733.1); similar to Os05g0462500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055767.1); similar to unknown [Sorghum bicolor] (GB:AAQ06259.1); contains InterPro domain Lung seven transmembrane receptor; (InterPro:IPR009637) 0.315893167772184 2.69049787999487 0.0263104040338396 1 3.44771357882971 14.4691780196655 0.315893167772184 0.13904303785811
AT2G15290_at 8.99127149924749 8.91726615102607 8.44152356891027 8.36425538152305 8.92293388223456 8.34193877186766 9.5548174665259 9.42620351647797 9.70591374497495 9.40013176509774 9.44536464466628 9.75799323253533 9.33468377896477 9.78084147401758 9.78908714379712 9.51260217478113 9.0923830276852 9.70394455665559 9.03331255834326 0.121774859121498 0.114336251065188 0.129174743353651 0.122164302902724 0.110390826508329 0.132886531410109 0.116019856768717 0.114378010307569 0.115943229598442 0.112691865981517 0.114806265377883 0.110404167059232 0.110351504742711 0.110351504742711 0.113736450798965 0.110496376815640 0.124184050849912 0.111236925538838 0.124813731477784 2 2 - 6649621 6650446 6650096.182 6649382 6651119 - gene protein_coding_gene FALSE TRUE AT2G15290.1 ATTIC21/CIA5/TIC21 (CHLOROPLAST IMPORT APPARATUS 5); protein homodimerization Encodes a protein located in the chloroplast inner envelope. The study of mutant defective in the gene product suggests that the protein is involved in the translocation of protein across the envelope membrane into the chloroplast stroma. similar to Tic21 [Pisum sativum] (GB:ABG00264.1) -0.266200137926453 -2.69016307466170 0.0263243783180755 1 3.44723152867740 18.3359755431982 -0.266200137926453 0.104629260588697
AT4G00955_at 5.51934336038385 5.72357972617827 6.29475179277829 6.3103373004564 6.00225284795487 5.25063321260307 4.96643987081708 4.98102642297174 6.02919082121382 4.7212909014133 5.7848369088317 4.93780243399626 5.41593574858243 6.04481766548198 4.67810141010036 5.65326873873944 5.00916859536537 5.80972680944025 5.64337236510751 0.255182439419342 0.252559569787195 0.261358231427307 0.261663851597585 0.247801135246550 0.261546598618750 0.260031933598047 0.247336875852027 0.257855767751774 0.24875340422477 0.250729018511965 0.247872486005103 0.247472853352939 0.251990500585820 0.253044440052725 0.253881769895981 0.250559386831005 0.25314689125784 0.249264482642735 4 4 + 412379 412925 412596.455 412118 413327 + gene protein_coding_gene FALSE TRUE AT4G00955.1 similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23450.1); similar to WAK-like kinase [Lycopersicon esculentum] (GB:AAS45124.1) 0.309492851466385 2.69003762974275 0.0263296161540441 1 3.44705091362445 11.071708225799 0.309492851466385 0.134838375631556
AT1G17930_at 5.49859179223942 5.48087644152785 5.47366067621469 5.30862934695559 5.60647824615363 5.89660821676184 4.61537676684986 4.70985562257804 4.48022914800079 4.81930735703711 4.43349082760452 4.46522353867863 4.564979647604 4.3358537064085 4.71271016474435 4.58169379931535 4.86630068612319 4.4822715927508 4.57134716707389 0.237881360298367 0.233818175249188 0.23032249950041 0.2282858321151 0.232119344120074 0.241951558279176 0.225517639397062 0.237574383121992 0.240551236723908 0.229299146558815 0.229841451542193 0.235632281557793 0.230309895704992 0.225987223829765 0.229092626764187 0.226273445219235 0.229821508818102 0.229086296726053 0.230713207733194 1 1|0 -|/ 6166715 6167267 6167011.1 6166213 6168832 - gene protein_coding_gene FALSE TRUE AT1G17930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25010.1); similar to Os01g0738500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044189.1); similar to Os07g0507600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059740.1); similar to transposon protein, putative, Mutator sub-class [Oryza sativa (japonica cultivar-group)] (GB:ABA93972.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) 0.213428285211192 2.68915354264377 0.0263665605357363 1 3.44577800238495 9.91323133171391 0.213428285211192 0.0601102397443635
AT2G26910_at 9.7056936065856 9.71825738278384 9.05540159929193 9.05381009047788 10.0466057140880 9.92827169954795 9.97826511384554 9.87260953061987 10.3262459948130 10.10524808138 10.5064983257540 10.3497798840948 10.1017859280359 10.0737398758117 10.1683049515288 9.94870425810886 9.62149093561777 10.2067636429516 10.1755629584424 0.0959480208939327 0.0934399535995307 0.096072397455132 0.0974116864562435 0.0928182437935302 0.0964018919558372 0.0955431758358559 0.0928137792109898 0.0964679556668613 0.0979611072940517 0.0904194183350251 0.0904194183350251 0.0956727120410004 0.0981225791713887 0.0924856890249156 0.0932642334872537 0.101384582244378 0.0961137187810768 0.0952929344463911 2 2 + 11494235 11494903 11494557.818 11488701 11495264 + gene protein_coding_gene FALSE TRUE AT2G26910.1 ATPDR4/PDR4 (PLEIOTROPIC DRUG RESISTANCE 4); ATPase, coupled to transmembrane movement of substances Identical to Probable pleiotropic drug resistance protein 4 (PDR4) [Arabidopsis Thaliana] (GB:O81016); similar to ATPDR12/PDR12 (PLEIOTROPIC DRUG RESISTANCE 12), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15520.1); similar to ATPDR11/PDR11 (PLEIOTROPIC DRUG RESISTANCE 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G66950.1); similar to ATPDR7/PDR7 (PLEIOTROPIC DRUG RESISTANCE 7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G15210.1); similar to Pleiotropic drug resistance protein 6 (GB:Q8GU87); similar to Pleiotropic drug resistance protein 4 (GB:Q8GU89); similar to PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59571.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain Plant PDR ABC transporter associated; (InterPro:IPR013581); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.18895150112389 -2.68849737806183 0.0263940146201450 1 3.44483324742593 19.8321072522133 -0.18895150112389 0.02754039931783
AT4G37330_at 7.32571199242813 7.683845519509 6.9886841991165 7.30783377559331 8.1767377625321 7.48391247897291 8.46388442606314 8.01600496290211 6.59610853277183 8.33002831903131 7.10835824398777 7.42746627077544 7.57917715216181 7.25642997160506 7.2454562469955 8.36308278561284 7.72335595074779 6.84015266777145 8.39111473465665 0.210358594378887 0.214276116923853 0.215391422678777 0.218752725898116 0.209857178226895 0.222067246079773 0.217720021695858 0.216240137555673 0.249556605429201 0.20950189949925 0.217084872332663 0.211827633393175 0.212641725627507 0.216973846960684 0.21056929397463 0.21746338144223 0.218306795376772 0.217769892514827 0.215757603133171 4 4 - 17562553 17563104 17562826.818 17562339 17564590 - gene protein_coding_gene FALSE TRUE AT4G37330.1 CYP81D4 (cytochrome P450, family 81, subfamily D, polypeptide 4); oxygen binding member of CYP81D similar to CYP81D2 (cytochrome P450, family 81, subfamily D, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37360.1); similar to CYP81D8 (cytochrome P450, family 81, subfamily D, polypeptide 8), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37370.1); similar to CYP81D5 (cytochrome P450, family 81, subfamily D, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37320.1); similar to CYP81E8 [Medicago truncatula] (GB:AAQ20042.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.356275977725639 -2.68804389981969 0.0264130052889152 1 3.44418031953342 15.2885029429866 -0.356275977725639 0.165148828618477
AT1G74970_at 9.07874505423575 9.20044856995683 8.3235698122414 8.34635940003777 9.02220114618522 8.88917644702708 9.19195136001847 9.42518565800527 9.812006348973 9.52898432357242 9.94471970015305 10.1607189918543 9.60065258178238 9.84566057115269 10.4191079019745 9.8500625631536 9.0622194708911 9.60796597785237 9.58613612041321 0.105945673693606 0.0979562876151782 0.107468420288534 0.101965206728804 0.100996173525126 0.101962880401509 0.105050538975828 0.101352071281864 0.104437285099425 0.100153911486578 0.0985491226087104 0.101229490516914 0.102636131193281 0.107513263750773 0.101272789209469 0.102687863320896 0.100595465274499 0.104244213713294 0.102678124701747 1 1 - 28161449 28162791 28162171.455 28161191 28162963 - gene protein_coding_gene FALSE TRUE AT1G74970.1 RPS9 (RIBOSOMAL PROTEIN S9); structural constituent of ribosome ribosomal protein S9, nuclear encoded component of the chloroplast ribosome Identical to 30S ribosomal protein S9, chloroplast precursor (RPS9) [Arabidopsis Thaliana] (GB:Q9XJ27); similar to ribosomal protein S9 family protein [Arabidopsis thaliana] (TAIR:AT3G49080.1); similar to 30S ribosomal protein S9, chloroplast precursor (GB:P82278); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754) -0.204871543491173 -2.68428335050743 0.0265710264977827 1 3.43876568906259 18.6615867147158 -0.204871543491173 0.0511682929225786
AT4G23820_at 8.10596879255446 8.26051377028334 5.48954346628851 6.12993203176128 7.53370655734993 7.57139510335777 6.73740982228479 7.24659815842741 9.56127283389272 8.35521743348397 10.0535589233906 9.4345889812024 9.1914124947524 9.36149404842567 10.0597030803245 8.51755348786626 7.4639754563332 9.10994094918623 8.74884281722863 0.16688145593621 0.163860297960775 0.19395568456847 0.186092671257848 0.178532498328679 0.171727516511011 0.180862749676360 0.170190251488783 0.170590504894269 0.166725866950663 0.163156323284006 0.166872562213693 0.163156323284006 0.163156323284006 0.163156323284006 0.163156323284006 0.171349578798934 0.164511343318948 0.166115297688205 4 4 - 12397234 12397796 12397523.273 12397048 12400101 - gene protein_coding_gene FALSE TRUE AT4G23820.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Os05g0587000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056466.1); similar to Os02g0256100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046468.1); similar to putative polygalacturonase [Oryza sativa (japonica cultivar-group)] (GB:AAT44156.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.322947140024033 -2.68323943532414 0.0266150632769325 1 3.43726257322382 16.1531198573986 -0.322947140024033 0.144236141833
AT1G77080_at 4.3317987075341 4.66909444016671 4.94378528790991 5.10057299131528 5.88071591866882 4.78991969779403 4.67550840927843 4.94961274552118 4.43667110935085 4.71453550720946 4.63638729099415 4.96182530511346 4.81739314123814 4.94056056199523 4.57273171271393 5.07590050377862 4.45307502489890 4.67078615359055 4.19006165646131 0.182420008424092 0.186097203897335 0.191203815354641 0.182031998636018 0.187168659230574 0.187473663546163 0.186488969905643 0.185553883386351 0.197136285333235 0.189352244685249 0.190069713075053 0.183386530083266 0.184296054006914 0.185251832786138 0.186083262946524 0.184868922879728 0.187730435553129 0.185134256155909 0.182520033380359 1 1|0 +|/ 28960677 28963916 28962151.9 28960531 28964990 + gene protein_coding_gene FALSE TRUE AT1G77080.2|AT1G77080.3|AT1G77080.4 MAF1 (MADS AFFECTING FLOWERING 1); transcription factor MADS domain protein - flowering regulator that is closely related to FLC. Deletion of this locus in Nd ecotype is correlated with earlier flowering in short days suggesting function as a negative regulator of flowering. similar to MAF3 (MADS AFFECTING FLOWERING 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65060.1); similar to 80C09_24 [Brassica rapa subsp. pekinensis] (GB:AAZ41835.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)|similar to MAF3 (MADS AFFECTING FLOWERING 3), transcription factor [Arabidopsis thaliana] (TAIR:AT5G65060.1); similar to 80C09_24 [Brassica rapa subsp. pekinensis] (GB:AAZ41835.1); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.420618967873368 2.68216752308929 0.0266603584990982 1 3.43571913023454 9.52421196783902 0.420618967873368 0.205003711506359
AT4G16000_at 9.40845327299004 9.94572257731967 9.71556579843464 10.0749529218478 10.5146506701856 9.79716553785932 9.77080096164197 9.66957889235843 6.8501832037865 6.50282529507194 6.23679784800038 6.46673247575398 7.01246715787914 6.97024610176583 4.57930496846194 8.03002200459126 7.99321598767653 6.99157655646547 5.82273541669465 0.235832830841783 0.235832830841783 0.240822753819231 0.239378805848106 0.237874398450424 0.242312543818945 0.241506934458653 0.235832830841783 0.237997731268395 0.243953213895302 0.2362153460925 0.246224049530307 0.246729536805236 0.239329967411757 0.250254511716977 0.23812621394087 0.235832830841783 0.247074902031857 0.243787163455307 4 4 - 9064204 9064392 9064292.273 9063857 9064493 - gene protein_coding_gene FALSE TRUE AT4G16000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G15990.1) 0.36003777753047 2.68167581368037 0.0266811626784282 1 3.43501111453844 16.4505913421257 0.36003777753047 0.168036723037898
AT1G22300_at 11.5242340743866 11.5052498767791 11.4784477432400 11.5187579782277 11.4990567652812 11.2234357212088 11.2862768559447 11.3713883136939 10.9541668569136 10.8023602149011 11.2953502874648 11.3354771625408 11.1775101669468 11.2606546831209 11.2722947266428 11.0669895468510 10.9853775628307 11.3187027125703 10.6854099216263 0.0646347019602199 0.0646347019602199 0.0685352713787309 0.0666701588000379 0.0646347019602199 0.0652438272330189 0.0660162150728048 0.0664370509908852 0.0748840004730685 0.0646347019602199 0.0652255919310258 0.0646347019602199 0.0671720419837653 0.0687489993052117 0.0682113049824022 0.0646347019602199 0.0699827083771119 0.0678966969227456 0.0656372623461495 1 1|0 -|/ 7879639 7880534 7880055.1 7878758 7881208 - gene protein_coding_gene FALSE TRUE AT1G22300.1|AT1G22300.2|AT1G22300.3 GRF10 (GENERAL REGULATORY FACTOR 10); protein phosphorylated amino acid binding 14-3-3 gene Identical to 14-3-3-like protein GF14 epsilon (General regulatory factor 10) (GRF10) [Arabidopsis Thaliana] (GB:P48347;GB:Q9LME5); similar to GRF11 (General regulatory factor 11) [Arabidopsis thaliana] (TAIR:AT1G34760.2); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308)|Identical to 14-3-3-like protein GF14 epsilon (General regulatory factor 10) (GRF10) [Arabidopsis Thaliana] (GB:P48347;GB:Q9LME5); similar to GRF11 (General regulatory factor 11), amino acid binding / protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G34760.1); similar to 14-3-3 protein [Nicotiana tabacum] (GB:BAD10938.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) 0.204101440047861 2.68151933884783 0.0266877865836858 1 3.43478580473213 22.4398677180626 0.204101440047861 0.0505118772713321
AT1G08210_at 5.13259220882224 5.28267989512757 5.25782905416979 5.13954408034767 6.30445858939729 6.41104916473333 5.26013042175705 4.66802870122650 4.93758920386812 5.28155668550138 5.65146990074492 5.40760706795846 5.35710334191505 4.86201702401128 4.9105085314314 5.18950055579049 4.98926633987929 4.52218190167368 5.56193970789508 0.171628642858029 0.175841732755412 0.185876965641576 0.182805808033598 0.179356967060064 0.178027540891315 0.175115676583559 0.181899171688163 0.173047887743856 0.173451464632192 0.176835861003418 0.173100783002809 0.174045245401313 0.174893337303133 0.173522445880865 0.173971408028867 0.178675839284501 0.175246937764302 0.179663886225058 1 1|0 -|/ 2577137 2578387 2577861.25 2577017 2580666 - gene protein_coding_gene FALSE TRUE AT1G08210.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G22850.1); similar to putative aspartic proteinase nepenthesin II [Oryza sativa (japonica cultivar-group)] (GB:BAD53242.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.271603691299694 2.68124119515683 0.0266995651223525 1 3.43438530186134 10.6178233637879 0.271603691299694 0.109238986124966
AT4G15680_at 4.20052374360272 4.58820231198925 4.02883175784985 4.44833953687371 4.19609485784610 4.86828478397599 3.99563198073864 4.81705916259452 7.54157043254927 6.57636604982654 8.1718657597152 8.41268388220678 5.16496161895053 6.3621094578529 8.69088325194168 6.18000171892017 7.36576920990307 8.77102572212634 5.44939902998169 0.229046483382694 0.228253271430239 0.239894194455917 0.239358840183698 0.230230918420325 0.221784460465602 0.241371279626996 0.225983623294449 0.224949323396036 0.230849896871064 0.229084161854377 0.221784460465602 0.230726443144261 0.229402792614610 0.239933428965383 0.223197805734719 0.23253700534758 0.225277469766809 0.221784460465602 4 4 + 8931863 8932095 8931962.545 8931650 8932293 + gene protein_coding_gene FALSE TRUE AT4G15680.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S4 (AtGrxS4) (GRXS4) [Arabidopsis Thaliana] (GB:O23419); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15670.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.426250420660689 2.67985189594087 0.0267584770790077 1 3.43238481674111 11.3490498911778 0.426250420660689 0.208591061316596
AT1G10350_at 7.33980028001064 7.66081406956957 7.33693688601643 7.46403004242481 7.66177459450543 7.68456819303568 7.28256828055554 7.35078187813516 7.04910535703988 6.8731680220229 7.26764796137535 7.46032577865326 7.265641479317 7.45881467671392 6.74371501863759 7.00813232182502 7.20461956153545 7.36308886526317 6.84580823455515 0.157235462384845 0.148857098502511 0.149344967038193 0.156055291492035 0.15177400274667 0.154398012080371 0.155845047749320 0.147681996476114 0.155431914274223 0.168555333708197 0.153310415552187 0.155089264629755 0.148082072245660 0.156245281181409 0.155455949480080 0.152663461567215 0.149007704604699 0.155941367352022 0.154247947793310 1 1 - 3393636 3394382 3393970.455 3393409 3395057 - gene protein_coding_gene FALSE TRUE AT1G10350.1 DNAJ heat shock protein, putative similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G59725.1); similar to potyviral capsid protein interacting protein 2a [Nicotiana tabacum] (GB:AAQ82702.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.213570319318491 2.67966855149359 0.0267662615196084 1 3.43212081292774 14.5447553175922 0.213570319318491 0.0610309521668312
AT2G42520_at 7.83813553796625 7.7349930155035 7.5741300619009 7.89152483771155 7.22854303625241 7.19441445049051 6.21960235377728 7.11357570322376 6.92675664734464 6.73522193550178 6.95839223403605 7.14916640762643 7.23478836624285 7.28024418331574 7.21239921848822 7.02261391760158 7.17554857670967 7.05181740961225 6.34987957271191 0.174335127406386 0.168168022633991 0.176569018921281 0.171985064608732 0.172337127608613 0.172219766786687 0.174368087311016 0.165197890209615 0.172198406339778 0.169532091493876 0.168908830901622 0.166962805706478 0.164984517829626 0.170936177460401 0.169953221215105 0.168409254706469 0.169566901356772 0.173659357670434 0.170034441684453 2 2 + 17714999 17715794 17715500.273 17711910 17716025 + gene protein_coding_gene FALSE TRUE AT2G42520.1 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 37 (EC 3.6.1.-) (RH37) [Arabidopsis Thaliana] (GB:Q84W89;GB:Q9SIN6); similar to ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G58510.3); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G58570.1); similar to Os07g0202100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059135.1); similar to Os03g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051626.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE89166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.355289173994569 2.6794981324944 0.0267734992407315 1 3.43187542053520 14.2524852117984 0.355289173994569 0.165240558035956
AT1G50440_at 8.21410450656732 8.15982165823276 8.02718996209433 7.78467363923527 8.45397992163246 7.9580788989928 7.65775069014687 7.75115686239432 7.4978311998674 7.25119430640461 7.8494631879033 7.91506127416387 7.94287378808678 8.04846456518888 7.73239181928915 7.97296053263511 7.67811346277434 7.71379782343763 7.61890963960404 0.156940833666729 0.156144537096990 0.156052181814410 0.154963140024965 0.154101576794015 0.172473573157119 0.152855112040284 0.168196683928025 0.172901165046025 0.163284072339512 0.154095210810769 0.151807861059175 0.157182466477661 0.159441459954613 0.160285661967626 0.152809946449214 0.160424062774312 0.161271214162565 0.157810978708957 1 1|0 +|/ 18689922 18691240 18690466.556 18689445 18691575 + gene protein_coding_gene FALSE TRUE AT1G50440.1|AT1G50440.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G11020.1); similar to hypothetical protein [Pongo pygmaeus] (GB:CAH89894.1); similar to hypothetical protein 185.t00015 [Entamoeba histolytica HM-1:IMSS] (GB:XP_651061.1); similar to Os02g0132300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045797.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.255467300439796 2.67936877046931 0.0267789945972916 1 3.43168914730935 15.6571541117338 0.255467300439796 0.0973427994880268
AT4G36440_at 6.16391721798625 6.67523967509694 5.75111568791827 5.87573022098699 6.67757220172285 6.03326292573654 5.97611314723524 6.0312281608042 6.01953522346301 6.09338025031852 5.48927191775604 5.69983249595947 5.71033367423221 5.8193264241332 5.42508665867903 5.61023838262395 5.17902521689148 5.67727251036872 6.1688905798883 0.249802471771441 0.240843606749306 0.246167185421511 0.240891351401917 0.235375449861506 0.248796820924982 0.237967947393533 0.237985127636372 0.26981500099685 0.235375449861506 0.235375449861506 0.242870125180181 0.239550358810352 0.240240871720268 0.250805855138728 0.239839872303561 0.245178890313014 0.259932539183401 0.244058428093626 4 4|0 -|/ 17207258 17208204 17207765.6 17206861 17210010 - gene protein_coding_gene FALSE TRUE AT4G36440.1 similar to putative protein [Medicago truncatula] (GB:ABE84072.1) -0.322420616166128 -2.67823634142951 0.0268271497836214 1 3.43005851176971 11.9831392853378 -0.322420616166128 0.144285621375047
AT2G28370_at 7.80017765069755 7.81831020528548 8.01051866770448 8.32927005350915 8.51781192575575 8.41664885748311 7.56516202323557 8.26844916380753 8.07398679955732 7.7355793595064 8.15445167570275 7.78506965398883 8.24941568022284 8.09674239251082 7.90042115494325 8.16091935783892 8.0020160872073 7.86582336141333 7.78952036767099 0.156920738662275 0.152297384680616 0.151830354693084 0.153185478330023 0.155597525542001 0.16479388501365 0.149178316691588 0.152900163350501 0.158451051920236 0.149558066984072 0.146542616124623 0.146056321608353 0.149180362355938 0.152628834457906 0.151193601687333 0.146904976753033 0.162442305737514 0.154612250250102 0.154324026556650 2 2 + 12139174 12140485 12139901.727 12138631 12140781 + gene protein_coding_gene FALSE TRUE AT2G28370.1 similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT2G37200.1); similar to unknown [Solanum tuberosum] (GB:ABB16987.1); similar to Os03g0206600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049320.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.308016430128430 2.67766981605775 0.0268512736980447 1 3.42924274070334 16.0374033664632 0.308016430128430 0.134802585649886
AT3G62700_at 9.950006879045 10.0253908987703 9.54296571751848 9.6113639302271 10.0336263738272 9.6430661424212 10.1808716192682 10.4545525419719 8.23220064547543 9.86211695530471 9.89453053623805 10.4074738614803 10.4667854014578 10.1378325603800 10.1751279831546 10.3445277021534 10.1644023306032 9.90973535563518 9.69993175290723 0.108396897131083 0.105273755476300 0.110313217318041 0.113284125028447 0.108844990743866 0.116312248211406 0.107884816755512 0.109192836823887 0.136240264129005 0.110449642802896 0.115520571832486 0.105273755476300 0.105969722247497 0.111242106804284 0.113392759213452 0.105273755476300 0.114894054404436 0.110691017979796 0.109454012989224 3 3|0 -|/ 23201440 23202212 23201806.444 23201243 23206738 - gene protein_coding_gene FALSE TRUE AT3G62700.1 ATMRP10 (Arabidopsis thaliana multidrug resistance-associated protein 10) member of MRP subfamily Identical to Multidrug resistance-associated protein 10 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 10) (ATP-energized glutathione S- conjugate pump 10) (MRP10) [Arabidopsis Thaliana] (GB:Q9LZJ5); similar to ATMRP4 (Arabidopsis thaliana multidrug resistance-associated protein 4) [Arabidopsis thaliana] (TAIR:AT2G47800.1); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59595.1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59596.1); similar to ABC transporter, transmembrane re (GB:ABE85045.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.238926119030003 2.67632926107145 0.0269084455876642 1 3.42731238698655 19.6563813883563 0.238926119030003 0.0843895896183286
AT3G06060_at 5.5983976180305 6.18953558061414 4.23416816087281 4.79555063191081 5.24355704911409 5.58209070965441 5.59095273957814 5.85967214672223 6.81476470675804 6.37496259482626 7.03041520025184 7.0045998390645 6.81784140095278 7.1489737014477 7.1843638006152 6.35051995601073 5.43265730102435 6.44090370820836 6.37805395809636 0.192209156386976 0.187063430808258 0.202769529862860 0.198634927143799 0.183392667683148 0.189296091497776 0.189132096966876 0.184147942712740 0.190859084424069 0.183537435287486 0.188485759308442 0.182886451815804 0.183727676178844 0.186777586608268 0.184392173107550 0.188540502234231 0.206218696916222 0.18245180001651 0.193393145266751 3 3|0 -|/ 1828459 1829692 1829001.3 1827986 1830206 - gene protein_coding_gene FALSE TRUE AT3G06060.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT5G19200.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE89395.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.346053636564088 -2.67614294786592 0.0269164012698219 1 3.4270441006652 11.9861796378990 -0.346053636564088 0.159680749041464
AT2G46520_at 5.69120999718604 6.53691559306976 6.46972531898912 6.4405110614715 6.73566337372514 6.09400604830328 6.6366409445499 7.03756149954485 5.16399726248795 5.6007646369092 6.73537312485132 6.98114182195922 6.17504654870179 5.83026363277807 6.55915866621817 6.13353714136443 6.41936012984826 5.9117181313618 5.7106046946315 0.263591414693735 0.23790273312707 0.239718004288424 0.245374160012344 0.239491828606515 0.245579202493574 0.238337613837694 0.240799850139877 0.24853120656803 0.246703270234505 0.241533022896598 0.242980739004822 0.245778774949119 0.247630886399859 0.246928055414756 0.239516231122533 0.252141505219106 0.241573755178076 0.250359580936624 2 2 + 19106260 19106813 19106504.545 19103840 19107344 + gene protein_coding_gene FALSE TRUE AT2G46520.1 cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative Identical to Importin-alpha re-exporter (Cellular apoptosis susceptibility protein homolog) (CAS) [Arabidopsis Thaliana] (GB:Q9ZPY7;GB:Q56WE2;GB:Q7GA14); similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to Importin-beta, N-terminal [Medicago truncatula] (GB:ABE93896.1); similar to Exportin-2 (Exp2) (Importin-alpha re-exporter) (Chromosome segregation 1-like protein) (Cellular apoptosis susceptibility protein) (GB:Q8AY73); similar to putative importin-alpha re-exporter [Oryza sativa (japonica cultivar-group)] (GB:BAA92904.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Cse1; (InterPro:IPR013713); contains InterPro domain CAS/CSE, C-terminal; (InterPro:IPR005043); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.405402738496895 2.67573261561498 0.0269339311469949 1 3.42645323118402 12.3727736117607 0.405402738496895 0.196440510556114
AT3G53890_at 10.4128287383526 10.5092386431610 10.1473553753365 10.1453004880391 10.2387828472680 10.0720163105309 10.4500956090506 10.6602170461750 10.4070554556850 10.3255955342824 10.3881211171109 10.6267895476214 10.2372847859372 10.1916003828734 10.9068508687021 10.0215342119123 9.82454086089889 9.9810899903048 10.2282292856861 0.100422342087435 0.0949931903965765 0.104891666360241 0.0990482279110447 0.101673645188172 0.102233164240914 0.100315543976529 0.096664010094001 0.102093011111943 0.0956340650018137 0.0986294145109412 0.09602000681709 0.0978800953011494 0.094938857129498 0.100763035883239 0.0931725531405778 0.100816489761247 0.0922900556199598 0.0964498208652454 3 3|0 -|/ 19966560 19967001 19966773.2 19966322 19967339 - gene protein_coding_gene FALSE TRUE AT3G53890.1|AT3G53890.2 40S ribosomal protein S21 (RPS21B) Identical to 40S ribosomal protein S21-1 (RPS21B) [Arabidopsis Thaliana] (GB:Q9M337); similar to 40S ribosomal protein S21 (RPS21C) [Arabidopsis thaliana] (TAIR:AT5G27700.1); similar to Ribosomal protein S21e [Medicago truncatula] (GB:ABD28456.1); contains InterPro domain Ribosomal protein S21e; (InterPro:IPR001931) -0.202649104219431 -2.67542876647519 0.0269469194349996 1 3.42601569384286 20.6257393301832 -0.202649104219431 0.04933156493648
AT4G25770_at 6.38134175477088 6.24576752005163 6.21457527674366 6.5617088812359 6.33068825512684 6.27211653116863 5.94170045104412 6.49848994891556 6.33314337793835 5.7292356749597 6.34223890519488 5.89929408177179 6.41237675239988 6.38629867470902 6.28184524603853 6.348690723446 6.39400982939168 6.4656627414996 5.4345540057455 0.258472380861624 0.253596244224502 0.278984310547947 0.272865718144784 0.271723537955050 0.265640666924423 0.273869748321026 0.257990760215354 0.263379995674623 0.253596244224502 0.256608981727855 0.259788836515919 0.256727475927261 0.253596244224502 0.256131802469235 0.254548477591230 0.25868162466485 0.257380340597207 0.260473480210206 4 4|0 -|/ 13118486 13119154 13118881.75 13117534 13120123 - gene protein_coding_gene FALSE TRUE AT4G25770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10040.1); similar to Os03g0726800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051137.1); similar to Protein of unknown function DUF676, hydrolase-like [Medicago truncatula] (GB:ABE83409.1); similar to Os08g0143700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Protein of unknown function DUF676, hydrolase-like; (InterPro:IPR007751) 0.280969208565891 2.67535774873761 0.0269499560679989 1 3.42591342941937 12.3801051468093 0.280969208565891 0.116388403264591
AT1G54100_at 10.0952131068765 10.2799288636357 10.7212633421379 10.6142815331558 11.1278652049406 10.5580919360624 10.7627230974118 10.7422363200372 9.97687385181556 10.2591964721388 10.3192756950576 9.80493637079829 10.4442715778814 10.4727779908737 9.73678525651278 10.5178784446540 10.4148148347487 10.5110186039962 9.8589906759858 0.085314776542514 0.083556375563596 0.0839729441278039 0.0824017922721577 0.0833591499176535 0.093433322371467 0.0826349232376026 0.0841994035351264 0.0953521116471733 0.0811708813290713 0.0841452442945458 0.0819739362049611 0.0811708813290713 0.088990908580602 0.0866870055032292 0.0811708813290713 0.0899509565270754 0.084524742138035 0.0816988468569547 1 1|0 -|/ 20199120 20200017 20199516.8 20198932 20202798 - gene protein_coding_gene FALSE TRUE AT1G54100.1|AT1G54100.2 ALDH7B4 (ALDEHYDE DEHYDROGENASE 7B4); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 7B4 (EC 1.2.1.3) (Antiquitin-1) (Turgor- responsive ALDH) (ALDH7B4) [Arabidopsis Thaliana] (GB:Q9SYG7;GB:Q546B7); similar to ALDH5F1 (SUCCINIC SEMIALDEHYDE DEHYDROGENASE), 3-chloroallyl aldehyde dehydrogenase/ succinate-semialdehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G79440.1); similar to aldehyde dehydrogenase family 7 member A1 [Euphorbia characias] (GB:AAX09646.1); similar to Aldehyde dehydrogenase family 7 member A1 (Antiquitin-1) (Brassica turgor-responsive/drought-induced gene 26 protein) (Btg-26) (GB:Q41247); similar to Aldehyde dehydrogenase family 7 member A1 (Turgor-responsive protein 26G) (Antiquitin-1) (GB:P25795); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.265691501959551 2.67513965944108 0.0269592834831068 1 3.42559938391795 20.7674038489299 0.265691501959551 0.105354096614059
AT1G01070_at 5.17047329050643 5.97689344769357 7.24159055293617 7.71438975204198 8.3183856598349 7.60955495132185 8.10170970068446 8.30316271596125 6.35337112521783 7.5176404874561 7.45872937477566 6.35717510530586 6.93887300086059 6.53691556189969 6.23808868212486 7.3862848759284 8.03165711263538 7.3492295385161 7.21533026464708 0.259722701082424 0.261911343784951 0.265325375048606 0.257271587706802 0.249834972955354 0.269318509916447 0.248510085063791 0.251387573643106 0.276416509692570 0.263873306329982 0.252048294993348 0.252637287280586 0.247631944211149 0.257775925298781 0.262645043626020 0.247631944211149 0.260623160596148 0.254303052620733 0.261051283191682 1 1|0 -|/ 38900 39526 39213.9 38752 40944 - gene protein_coding_gene FALSE TRUE AT1G01070.1|AT1G01070.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G11460.1); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os02g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045606.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE82165.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G11460.1); similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT1G11450.2); similar to Os06g0109300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056575.1); similar to Os02g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045606.1); similar to H0523F07.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67024.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.420629485527223 2.67175265053709 0.0271045646033045 1 3.42072207306919 14.3374699000123 0.420629485527223 0.205991528053268
AT1G24360_at 9.71913993750198 9.74775948793748 9.35068364865163 9.3525859629848 9.41739201841538 9.11225442707243 9.75929044946815 9.74632919381519 9.79713105950654 9.58762255333642 9.74354178663699 10.1579173807611 9.3700520968829 9.86250920314345 9.99603080760163 9.48829542687806 9.074452738715 9.47254570145047 9.48095902749576 0.107369826017749 0.106547649709114 0.114867574950764 0.105881645482475 0.111596279785179 0.117517970548465 0.108335429094055 0.108390884262587 0.115708651665103 0.109275471343581 0.105059983728084 0.106316660226954 0.110968291486755 0.112584724472309 0.108739832286735 0.106078864923494 0.118756054237012 0.113530810615384 0.107553242126368 1 1|0 +|/ 8641944 8643115 8642714.857 8640571 8643467 + gene protein_coding_gene FALSE TRUE AT1G24360.1 3-oxoacyl-(acyl-carrier protein) reductase, chloroplast / 3-ketoacyl-acyl carrier protein reductase Identical to 3-oxoacyl-[acyl-carrier-protein] reductase, chloroplast precursor (EC 1.1.1.100) (3-ketoacyl-acyl carrier protein reductase) [Arabidopsis Thaliana] (GB:P33207;GB:O04463;GB:Q9FPJ6); similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29370.1); similar to 3-oxoacyl-[acyl-carrier-protein] reductase 1, chloroplast precursor (3-ketoacyl-acyl carrier protein reductase 1) (Beta-keto acyl-carrier protein reductase 1) (GB:Q93X62); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain 3-oxoacyl-(acyl-carrier-protein) reductase; (InterPro:IPR011284); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.205568411793589 -2.67167177927009 0.027108043196857 1 3.42060561653999 19.1594655688333 -0.205568411793589 0.0530856686402875
AT2G46100_at 10.8152829195744 11.0073633959322 11.2734667298714 11.2757330269754 11.4426869528083 10.9371133911804 11.5882762586856 11.3316114795594 10.2868316913304 10.6014601117004 11.0610308716656 10.8084178787326 10.9052318419296 10.9511386310917 10.7015639153398 11.2182622776209 11.1292159946710 10.7331331819047 10.4902583182508 0.119042791365288 0.119042791365288 0.119122411719079 0.119042791365288 0.119965551560835 0.130570008623921 0.119042791365288 0.119042791365288 0.142271906673461 0.125410268356405 0.123525569039664 0.119042791365288 0.119042791365288 0.119042791365288 0.119042791365288 0.119042791365288 0.135931872307980 0.130283352545211 0.119042791365288 2 2|0 +|/ 18960669 18961085 18960837.2 18960353 18961682 + gene protein_coding_gene FALSE TRUE AT2G46100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04890.1); similar to H0404F02.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66733.1); similar to Os04g0578200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053638.1); contains domain NTF2-like (SSF54427) 0.262799564398307 2.66976042806902 0.0271903904827836 1 3.41785320657805 21.9079497849301 0.262799564398307 0.103599125067402
AT4G02610_at 5.64928474079852 5.90427497758514 6.15271452260585 5.90793257665406 6.64071146245579 6.14122343764875 5.76851392990524 5.49230509920105 5.36458310004264 5.66422986643663 5.5860711321941 5.5100052445008 5.94749266773111 5.55874848654536 5.60000012100875 5.3319972532435 5.47752647024366 5.56163464249506 5.5279106498067 0.209960662261604 0.202801431846523 0.210952172614428 0.203978268318308 0.20273266993709 0.2175119776588 0.215428899401676 0.207112732382597 0.222946337245369 0.200577123252938 0.215098004770102 0.201427491583596 0.201810730801236 0.203805071951198 0.205141328641136 0.202804503912499 0.21003941788172 0.209274960004392 0.200129023017274 4 4|0 +|/ 1148079 1149190 1148679.8 1147634 1149336 + gene protein_coding_gene FALSE TRUE AT4G02610.1 tryptophan synthase, alpha subunit, putative similar to TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN), tryptophan synthase [Arabidopsis thaliana] (TAIR:AT3G54640.1); similar to Os07g0182100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059049.1); similar to tryptophan synthase, alpha subunit (TSA1) [Isatis tinctoria] (GB:CAH56477.1); contains InterPro domain Tryptophan synthase, alpha chain; (InterPro:IPR002028); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Triosephosphate isomerase; (InterPro:IPR000652) 0.279913721559298 2.66808539476658 0.0272627658565522 1 3.41544107288076 11.5024162805271 0.279913721559298 0.116181151325542
AT1G62200_at 7.47598442016303 8.03173560993524 7.82808248761711 7.86867852303356 8.72713593443141 8.17751539004595 7.43103334402373 7.30188712986396 6.75878131640711 7.22056458478616 7.10490944202851 6.91048142273201 7.24410535582336 7.52691615841572 6.40361112345822 7.36369543694147 7.0240697953451 7.29896626777025 7.25931766092403 0.200437746185901 0.193261856659498 0.211433490990505 0.197815326306880 0.207482778077295 0.214546563446042 0.197397913369643 0.19215694816857 0.206255845457605 0.195562042961890 0.192540599954028 0.199610204100278 0.205964841881865 0.198906172517846 0.211062226855322 0.190837631828634 0.214165266933728 0.198605549305393 0.191229775396193 1 1 - 22985866 22986379 22986113.273 22985701 22988024 - gene protein_coding_gene FALSE TRUE AT1G62200.1 proton-dependent oligopeptide transport (POT) family protein similar to ATPTR2-B (NITRATE TRANSPORTER 1), transporter [Arabidopsis thaliana] (TAIR:AT2G02040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT2G02020.1); similar to LeOPT1 [Lycopersicon esculentum] (GB:AAD01600.1); similar to peptide transporter 1 [Vicia faba] (GB:AAP44102.1); similar to amino acid/peptide transporter [Prunus dulcis] (GB:AAF20002.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.310116406197039 2.66383120141658 0.0274474654650789 1 3.40931470079950 14.9498310528993 0.310116406197039 0.137278158829415
AT1G11440_at 6.28315656758144 6.83673784490477 5.28325149596541 5.38314130070835 6.28232821297282 5.59465783524321 6.48096527260057 6.62794415814283 5.48270947073141 6.06991383600172 6.26706182008069 6.85341437460139 5.87169059777845 6.41918415606267 6.1310648521627 6.64021649382707 5.53042613815736 5.08086254888014 6.01135144230318 0.275907440265247 0.264874068352527 0.272652324042804 0.274559558279666 0.262867266331678 0.282908848446896 0.269707841729763 0.263889333396464 0.262280819324662 0.268832158631447 0.263553308538943 0.258884498249836 0.258884498249836 0.264048691943861 0.264450629669108 0.258884498249836 0.285831998860555 0.28945339787992 0.267925306910634 1 1 + 3849939 3850473 3850246.909 3849360 3850662 + gene protein_coding_gene FALSE TRUE AT1G11440.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT3G29075.1); similar to Os06g0232000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057224.1); similar to Stress protein DDR48 , related [Medicago truncatula] (GB:ABE86766.1) -0.338387188284959 -2.66324348292609 0.0274730817562033 1 3.40846832773369 12.0734720222012 -0.338387188284959 0.155837963107837
AT1G22040_at 4.96920133949124 5.75515498331474 5.62074386153594 5.93053502681168 6.39641533400333 5.91008596191572 5.76629111666776 5.46733928143292 5.01230645293632 5.20580396630011 5.4491832550798 5.13879723143904 5.47021091902723 5.48678147629408 4.52565296686012 5.5088240650846 5.58062817450352 4.99363275575559 4.78894227448035 0.229980818510914 0.215839721170966 0.217351473528744 0.228240315356517 0.220640609338604 0.215839721170966 0.226825324788173 0.215839721170966 0.222791023416911 0.225831092888127 0.215839721170966 0.217635751375207 0.221753916179846 0.222521742586516 0.218943425835188 0.220926781728665 0.219402151962557 0.22801408255157 0.230754358037486 1 1 + 7769196 7769745 7769460.909 7767913 7770044 + gene protein_coding_gene FALSE TRUE AT1G22040.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G55270.1); similar to Os10g0363600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064441.1); similar to Os02g0574900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047209.1); similar to putative Kelch motif containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAL84293.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.370905661719952 2.66260558837119 0.0275009125648813 1 3.4075496929233 10.8627532398522 0.370905661719952 0.176446365006944
AT3G09690_at 4.99566744836086 5.15850620064813 4.8075911168154 4.28499544054023 4.97645030506286 4.65938259065448 4.92295321481932 5.0667792829582 5.49000793499294 5.19722210294391 5.34230997885089 5.24943290931168 4.83969023387616 5.07015645119973 4.64410217464864 4.82255276451488 4.93803401431356 5.21071610503381 4.93827602092408 0.195630478220631 0.191038525249708 0.199118487520024 0.195631123464241 0.189324682632945 0.198753919172558 0.191278164885867 0.196926172621522 0.202300747455386 0.189324682632945 0.199119476916474 0.193774847023593 0.190337025042021 0.192102617459033 0.189324682632945 0.189324682632945 0.192582156667474 0.190707184229455 0.196264896562289 3 3|0 +|/ 2973835 2974528 2974213.9 2971878 2974848 + gene protein_coding_gene FALSE TRUE AT3G09690.1|AT3G09690.2 hydrolase, alpha/beta fold family protein|hydrolase similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G02970.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE78305.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.273874682040013 -2.66257168630669 0.0275023924866833 1 3.40750087031537 9.97060387427692 -0.273874682040013 0.112264412995671
AT1G76405_at 4.74648865042527 4.80497092772510 3.98529293032564 4.11365013052428 4.80853376703894 4.1444401741066 5.11690862622969 4.80724742262494 5.07326432038782 4.68705183617275 5.11054170812672 5.54368486204564 4.21773777651306 4.92125042641355 5.44253827711256 5.00558594913043 4.94723566519161 4.70781730857627 5.17033097854823 0.235032125653013 0.228112451025505 0.240966860108122 0.227454545203039 0.227454545203039 0.233024285814901 0.227454545203039 0.231285358640438 0.239686660148421 0.233069360330116 0.236377639853235 0.227454545203039 0.2312496752886 0.227454545203039 0.233462903509717 0.229924508837211 0.227454545203039 0.233984772065945 0.231275539417940 1 1|0 +|/ 28666891 28668541 28667839.667 28666778 28668683 + gene protein_coding_gene FALSE TRUE AT1G76405.1|AT1G76405.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20816.1); similar to chloroplast channel forming outer membrane protein [Pisum sativum] (GB:CAB58442.1); similar to chloroplast channel forming outer membrane protein [Medicago truncatula] (GB:ABE83242.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20816.1); similar to chloroplast channel forming outer membrane protein [Pisum sativum] (GB:CAB58442.1) -0.297879018991627 -2.66223069540016 0.0275172822214359 1 3.40700980633273 9.54790726612922 -0.297879018991627 0.129132424067759
AT4G24920_at 10.1837975948596 10.4235648546299 10.5741427202183 10.6666360652126 10.1962368441455 9.39984475768406 9.56985293190971 9.4208176251828 9.55465345324365 9.23667172660311 10.1454979154085 10.1392261198802 9.42373150228748 9.53304225210754 9.91520503820066 9.71787111076304 9.01698263358267 9.2903318562479 9.133174786918 0.119715459754011 0.118134042865804 0.119512909838443 0.120153279253386 0.116872367148355 0.118716153105399 0.1192997524979 0.121771414501245 0.123667829034883 0.130281323289315 0.117546503835431 0.117425019904003 0.122262418623533 0.124748966745955 0.116644925381643 0.116560446052022 0.128546713093220 0.119184768730699 0.119823620281048 4 4 - 12820288 12820637 12820453.818 12819521 12820746 - gene protein_coding_gene FALSE TRUE AT4G24920.1 protein transport protein SEC61 gamma subunit, putative Identical to Protein transport protein SEC61 gamma-1 subunit (SEC61G2) [Arabidopsis Thaliana] (GB:Q9SW34); similar to protein transport protein SEC61 gamma subunit, putative [Arabidopsis thaliana] (TAIR:AT5G50460.1); similar to Os02g0178400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046076.1); similar to Protein transport protein SEC61 subunit gamma (GB:Q7Z1B8); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_797211.1); contains InterPro domain Protein secE/sec61-gamma protein; (InterPro:IPR001901); contains InterPro domain Protein translocase SEC61 complex gamma subunit; (InterPro:IPR008158); contains InterPro domain SEC61 complex gamma subunit; (InterPro:IPR008159) 0.324638121570546 2.66109060425570 0.0275671251371664 1 3.40536794441074 19.5323130288043 0.324638121570546 0.147095979253244
AT3G56740_at 5.2634694339097 5.49988921882814 5.44324266441922 5.89427167532712 6.34269999719966 5.32649341885905 5.63054388938042 5.19745020687559 4.20319224552795 4.11060877304452 4.36508943063103 4.54672210963973 4.68038185367777 4.82960673441253 4.40924672238858 4.66834729010757 5.48543169638181 4.26022028363829 4.15659858483948 0.251360743477847 0.249694539214757 0.257390527394754 0.256371032820506 0.26039705647772 0.266750085920402 0.249694539214757 0.268252964629347 0.269469709711007 0.253721024996841 0.263117430512756 0.249694539214757 0.250173707694820 0.253117014009877 0.268710524606934 0.249694539214757 0.258226415985315 0.249694539214757 0.251760956401654 3 3|0 +|/ 21027641 21028805 21028291.4 21026350 21029136 + gene protein_coding_gene FALSE TRUE AT3G56740.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G41160.1); similar to UBA/TS-N domain, putative [Medicago truncatula] (GB:ABD33028.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.426334824504239 2.66043211751529 0.0275959549544561 1 3.40441964342629 9.98097287955668 0.426334824504239 0.210499316218346
AT2G23350_at 7.26711012957264 6.92004521382154 6.26175490256303 6.47100133581092 6.49274049689967 6.41567718813309 7.45940617394938 7.59108436382537 6.95964764394154 6.98300232739041 6.97055561078976 7.63227777363362 7.1653397346214 7.19033546012932 7.88816174482079 7.11232305854458 7.15988793955468 6.73989945385134 6.41588802907775 0.158637777034911 0.157925063938175 0.165196173538140 0.160595535278803 0.158932885115708 0.160810174114025 0.157614676543110 0.157972685432239 0.162501277487022 0.157090464199669 0.152798247734644 0.159576496931903 0.154960526657920 0.165537917524506 0.160385705695795 0.153176968914032 0.161077918182878 0.158941610749314 0.157860557565812 2 2 + 9952346 9952967 9952611.273 9950133 9953349 + gene protein_coding_gene FALSE TRUE AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to poly(A)-binding protein [Daucus carota] (GB:AAK30205.1); similar to RNA-binding re (GB:ABE82276.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66823.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515) -0.226474862958634 -2.65932454150585 0.0276445160007491 1 3.4028245919013 13.8691159408035 -0.226474862958634 0.0749380696639212
AT1G17510_at 5.77531094761399 6.00016952226417 5.60977078585048 5.83774183471775 5.82104876303909 5.96572981000918 4.92409745542767 5.09659963642297 5.17184024410392 4.68695126242771 4.76708910411248 4.96838823194993 5.17125852131203 4.696103316812 4.97495911467096 4.92193830284131 5.40655381479414 4.70208926224313 4.76097848690119 0.175734569339271 0.175153657372262 0.170735255497956 0.180715981864341 0.182705703361443 0.169902755579174 0.175686263665118 0.181401832816598 0.182740685002265 0.180882082539740 0.191649178207323 0.174410900647855 0.174236529728340 0.178412570578696 0.175449185979676 0.175874954165815 0.179526167573790 0.170948093685915 0.182549777785277 1 1|0 -|/ 6023698 6024161 6023977.5 6023497 6024302 - gene protein_coding_gene FALSE TRUE AT1G17510.1 unknown protein 0.218659601043162 2.65877272749939 0.0276687424258879 1 3.402029905579 10.5409606559530 0.218659601043162 0.0677397465609857
AT2G34160_at 6.70687773593048 6.15439206607856 6.44845007765637 6.63147401530866 6.65136301384258 6.47479390240857 6.62340285784729 6.20215359547073 5.7316291688494 5.33589602089052 6.06727701049773 6.22317406258778 6.13198790042962 6.39782953292474 5.84105569436796 5.98697828003389 5.72551635634828 5.3529063587468 5.44420725768309 0.196858344690505 0.190773364108792 0.18898979356685 0.197249216036173 0.196288003239665 0.193336518104973 0.195771056744364 0.190618873615777 0.189672013813023 0.191718802999167 0.191345938501308 0.187665598759237 0.187049884984261 0.187591623309403 0.187049884984261 0.191867380256159 0.194627249411151 0.192334876518048 0.192964151363327 2 2|0 +|/ 14433368 14434202 14433755.889 14433282 14434462 + gene protein_coding_gene FALSE TRUE AT2G34160.1 nucleic acid binding Identical to Protein At2g34160 [Arabidopsis Thaliana] (GB:O22969); similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G29250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15498.1); similar to Os06g0602600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058008.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775) 0.295871761078358 2.65862582431384 0.027675195593422 1 3.40181834488042 12.2214891407178 0.295871761078358 0.128033059970881
AT3G26020_at 6.53425053178815 7.14590419775477 6.8525102285484 7.0084301213042 7.59835716051863 7.1100351201558 7.19092726797806 7.01753271798095 6.50182242587024 6.29872951089874 7.40625182747896 6.94179008098692 6.72829334149116 6.87777273727516 6.63006343130832 6.94891646100835 6.59816131978665 6.73299337202609 6.39092683135066 0.212499630003038 0.219079199819324 0.215204667551786 0.221205631758524 0.216385662838614 0.224656578237649 0.214643375837006 0.215415722566967 0.223917418677447 0.223524653267504 0.212144805921796 0.217290803694249 0.212966436281635 0.236223871872597 0.210377747193097 0.217341722022387 0.228709244683866 0.221745873228810 0.211785775389599 3 3 + 9516538 9517677 9516935.909 9514933 9518200 + gene protein_coding_gene FALSE TRUE AT3G26020.1|AT3G26020.2 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative|protein phosphatase type 2A regulator Identical to Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' eta isoform (PP2A, B' subunit, eta isoform) (AtB' eta) (B'ETA) [Arabidopsis Thaliana] (GB:Q9LU89); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT3G21650.1); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) [Arabidopsis thaliana] (TAIR:AT4G15415.1); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os04g0485100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053130.1); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) 0.315525105401632 2.65809537448135 0.0276985099633523 1 3.40105442322251 13.6848383736503 0.315525105401632 0.141329126149322
AT1G04170_at 8.6313120870259 8.70810488549894 8.39485856839821 8.31244981971746 8.2430053825906 8.07996801328652 8.96850332779868 8.88441247344394 7.57019523146162 7.91135862566343 7.99566170180253 8.49888510155286 7.65827300540827 7.34092557149671 8.61273765300634 7.7881651756156 7.51067448549326 7.54257978340894 7.65672672579942 0.17797769070368 0.175047889271401 0.182426509547932 0.180507332201328 0.185172292646898 0.187637179425074 0.176956167500231 0.175047889271401 0.193268967520708 0.180969510906842 0.178395848174832 0.179342975091761 0.182691397974636 0.181327127012704 0.183938771257737 0.185575628970359 0.195805562404843 0.187020949397844 0.179642335226066 1 1|0 +|/ 1099063 1099656 1099285 1096945 1099897 + gene protein_coding_gene FALSE TRUE AT1G04170.1 EIF2 GAMMA (eukaryotic translation initiation factor 2 gamma subunit); translation factor, nucleic acid binding protein synthesis initiation factor eIF2 gamma similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT4G18330.2); similar to eukaryotic translation initiation factor 2 subunit 3, putative / eIF2S3, putative / eIF-2-gamma, putative [Arabidopsis thaliana] (TAIR:AT2G18720.1); similar to Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) (ISS) [Ostreococcus tauri] (GB:CAL53687.1); similar to translation initiation factor 2 gamma subunit [Lithobius forficatus] (GB:CAG29663.1); similar to translation initiation factor 2 gamma subunit [Lepismachilis sp. VK-2004] (GB:CAG29668.1); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.192392566014382 -2.65800672139546 0.0277024083992871 1 3.40092675023444 16.3184508217356 -0.192392566014382 0.0372533241078251
AT2G38800_at 10.2858526551259 10.4788146119806 11.0413291644664 11.0757773622326 11.1492402888911 11.0075440833732 10.7483568441324 10.6226784348963 10.2520569558144 10.7902048425712 10.4687645563204 10.1763130525598 10.6185188536782 10.4698686692499 9.94478228442296 10.8163705932390 10.6791441486930 10.4571678963710 10.7260373083818 0.0944404230955855 0.0944404230955855 0.098815436259963 0.0956001405707983 0.0984315388730315 0.0983639357687936 0.0973773550945263 0.0981986888337927 0.106905296829802 0.0975484696218887 0.0981956181301273 0.0956492334386302 0.0944404230955855 0.097871083589946 0.103995490853726 0.0952569376758762 0.100956895173744 0.101859408644291 0.0944404230955855 2 2 + 16225365 16225891 16225685.636 16224077 16226237 + gene protein_coding_gene FALSE TRUE AT2G38800.1 calmodulin-binding protein-related similar to calmodulin-binding protein-related [Arabidopsis thaliana] (TAIR:AT3G54570.1); similar to Calmodulin-binding, plant [Medicago truncatula] (GB:ABE88376.1); contains InterPro domain Calmodulin-binding, plant; (InterPro:IPR012417) 0.199490154717329 2.65683217082396 0.0277541108907596 1 3.39923522608088 21.3228488268403 0.199490154717329 0.047169340649912
AT1G13190_at 7.24074282905582 7.02715907878003 7.23597672897254 7.2704544071118 7.2550913032226 7.19774642081037 6.40720765997026 6.50561925609831 7.0815860422524 6.91510414965465 6.27630372257273 6.60279708953487 6.85757482247067 7.04366572889536 6.99102834523386 7.1383088643591 7.39920345382135 6.8270671061961 6.83864633812635 0.158771759960107 0.164873955053707 0.165501771830277 0.159516880823978 0.161389499560961 0.168617081291014 0.166266168400561 0.168212776644026 0.164062019297945 0.159764081960352 0.162771698428792 0.162558732594021 0.162288769361922 0.163767450539602 0.162672947588127 0.158720269402561 0.163355335817055 0.160257909341495 0.169823567549825 1 1 + 4500753 4501115 4500877.182 4498878 4501610 + gene protein_coding_gene FALSE TRUE AT1G13190.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55670.1); similar to Os08g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062111.1); similar to Os09g0476100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063463.1); similar to hypothetical protein DDBDRAFT_0205004 [Dictyostelium discoideum AX4] (GB:XP_639372.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.195758237005465 2.65635128581883 0.0277753072690332 1 3.39854267882875 13.9360526196594 0.195758237005465 0.042311779115151
AT1G50940_at 7.78881761845321 7.77823980218964 7.94250779038267 7.8145447880383 8.11250811572842 8.00219418179548 7.56001570828342 7.47805913020185 6.66204665054994 7.31516805471924 6.77610568872844 6.82916462031644 6.92466093751614 7.10536857921188 6.90422038629028 7.21289687158748 7.11566906245172 6.71526673254582 6.68026306932759 0.183146681290602 0.181859260950002 0.192268066926935 0.187781064735938 0.192561523210188 0.19319679295645 0.192942952725458 0.193463194567985 0.201989035974868 0.183664885087050 0.178924841672274 0.178924841672274 0.188845665378197 0.195461372200063 0.179327471633298 0.184647948105915 0.198027408581083 0.193536419460039 0.186969597860086 1 1|0 -|/ 18881760 18882597 18882255.111 18881480 18883671 - gene protein_coding_gene FALSE TRUE AT1G50940.1 ETFALPHA (ELECTRON TRANSFER FLAVOPROTEIN ALPHA); FAD binding / electron carrier Encodes the electron transfer flavoprotein ETF alpha, a putative subunit of the mitochondrial electron transfer flavoprotein complex (ETF beta is At5g43430.1) in Arabidopsis. Mutations of the ETF beta gene results in accelerated senescence and early death compared to wild-type during extended darkness. similar to electron transfer flavoprotein alpha-subunit [Granulibacter bethesdensis CGDNIH1] (GB:YP_745914.1); similar to electron transfer flavoprotein, alpha subunit [Saccharophagus degradans 2-40] (GB:YP_527469.1); similar to Os03g0835400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051818.1); contains InterPro domain Electron transfer flavoprotein, alpha subunit; (InterPro:IPR001308); contains InterPro domain Electron transfer flavoprotein beta-subunit; (InterPro:IPR000049) 0.189374419584811 2.65626541417721 0.0277790940396310 1 3.39841901049532 14.7264834092324 0.189374419584811 0.0325473751693713
AT3G04350_at 6.56829705568325 7.15837967715887 7.12003884721399 7.15440595325798 8.09122032637504 7.73162068507276 6.8256089605911 6.72080304956715 6.49691622531668 6.29618980060261 5.93208179096151 6.10440008688331 6.01863984750226 6.67491340262801 5.34872223492229 6.78524883496974 7.16001891982435 6.25116861568061 6.46456210839534 0.189848589318195 0.198470406213916 0.199813494527087 0.194799949362069 0.199170582801427 0.204567813010522 0.190182393761628 0.201227889880398 0.201872564502136 0.19684676979506 0.194655251354685 0.192095859787654 0.192885507651756 0.203351854000501 0.211684156339843 0.188284421716941 0.215511880607281 0.194090130793356 0.195565348634973 3 3 - 1154047 1154548 1154299.636 1153734 1156783 - gene protein_coding_gene FALSE TRUE AT3G04350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G18490.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43950.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04090.1); similar to pre-mRNA processing protein PRP39, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93921.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE91890.1); similar to Protein of unknown function DUF946, plant [Medicago truncatula] (GB:ABE90426.1); contains InterPro domain Protein of unknown function DUF946, plant; (InterPro:IPR009291) 0.285612886231576 2.65619146502393 0.0277823554729257 1 3.39831251233463 13.5231077834199 0.285612886231576 0.121098057292107
AT3G12800_at 9.55337475656274 9.6586593966882 9.9339521134824 9.86046669489651 9.68168498491014 9.5533613030852 9.64302013402552 9.71197018064652 7.99076459158276 8.940205224981 8.81236542283611 8.49819708232947 8.7470492451026 8.90476357789134 8.51954973372948 8.83713374017996 9.04082379775462 8.60949536889785 8.51448679351097 0.0967297443808016 0.0971724375221302 0.0963565835887258 0.098436991964704 0.0977576747255238 0.0991984157349912 0.096759048049109 0.0995228454292624 0.114521778730864 0.101853003420538 0.101631594097457 0.0951903142194296 0.101827738291764 0.099525142492882 0.101023529964961 0.0973459763593962 0.104438334338072 0.101379650395227 0.104754821333110 3 3|0 -|/ 4063492 4064734 4064141.632 4063330 4064829 - gene protein_coding_gene FALSE TRUE AT3G12800.1 short-chain dehydrogenase/reductase (SDR) family protein Identical to Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34) [Arabidopsis Thaliana] (GB:Q9LTV6;GB:Q67Y37;GB:Q680G7); similar to D2,D4-dienoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G07640.1); similar to Os04g0614000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053860.1); similar to MGC82265 protein [Xenopus laevis] (GB:AAH71136.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.189981766589044 2.65610251083743 0.0277862792003719 1 3.39818440456937 18.3135567535947 0.189981766589044 0.0336038286055100
AT3G57230_at 6.91535163061555 7.1529899279152 6.80348721802648 6.87676022601595 7.26989603827187 6.89823908188106 6.85397225545759 6.8267606674473 5.98966431730734 6.45268517638 6.70564930695201 6.53252799865651 6.38613924827718 7.00580343699439 6.6323713068521 6.90081446350956 6.55675206062463 6.71062740704528 6.29396047948067 0.214268055521321 0.206650116183831 0.206716733832269 0.213423292770601 0.212500758267931 0.215797959421797 0.207893336044729 0.207091501730635 0.239876711791577 0.211858673125874 0.219349581326874 0.214958943562216 0.207507223752338 0.218225666956175 0.213159646172634 0.206650116183831 0.225049370205225 0.218599470546561 0.211657183371059 3 3|0 +|/ 21188811 21191615 21190979 21188689 21191911 + gene protein_coding_gene FALSE TRUE AT3G57230.1|AT3G57230.2 AGL16 (AGAMOUS-LIKE 16); transcription factor|AGL16 (AGAMOUS-LIKE 16) MADS-box transcription factor. Expressed in leaf, root and stem, with higher RNA accumulation in guard cells and trichomes. similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to Os02g0579600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047230.1); similar to MADS-box transcription factor MADS2 [Zea mays] (GB:AAO85643.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487)|similar to AGL21 (AGAMOUS-LIKE 21), transcription factor [Arabidopsis thaliana] (TAIR:AT4G37940.1); similar to Os02g0579600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047230.1); similar to putative transcription factor MADS27 [Oryza sativa (japonica cultivar-group)] (GB:BAD29571.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) 0.229113008290614 2.65606563212324 0.0277879060685008 1 3.39813129351076 13.4118182863722 0.229113008290614 0.0775296980176647
AT2G38540_at 12.2706840347226 12.4329689473790 12.4601931379406 12.5793185263273 13.0824089442164 13.0829360127046 13.4669958652667 13.7643651158078 13.7304950419681 13.5389847837672 14.3930386365972 14.3522987983300 14.0506330682431 14.1508025018022 14.3860435695195 13.5315697727793 13.5509090694361 14.3569045000089 13.1960652099822 0.069104689103599 0.0682539956553556 0.0687391645075705 0.0687252191664128 0.0660416834032542 0.0684019621053284 0.0672425957250635 0.0660416834032542 0.0667137383163258 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0660416834032542 0.0725302106723219 0.0660416834032542 0.0663679563246495 2 2 + 16137510 16137760 16137628.273 16137428 16138252 + gene protein_coding_gene FALSE TRUE AT2G38540.1 LP1 (nonspecific lipid transfer protein 1) Non-specific lipid transfer protein. Binds calmodulin in a Ca2+-independent manner. Localized to the cell wall. Specifically expressed in L1 epidermal layer. Identical to Nonspecific lipid-transfer protein 1 precursor (LTP 1) (LTP1) [Arabidopsis Thaliana] (GB:Q42589); similar to LTP2 (LIPID TRANSFER PROTEIN 2), lipid binding [Arabidopsis thaliana] (TAIR:AT2G38530.1); similar to Nonspecific lipid-transfer protein A precursor (LTP A) (Wax-associated protein 9A) (GB:Q42641); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.212735321093467 2.65557028142534 0.0278097673728921 1 3.39741791094978 26.6850038237933 0.212735321093467 0.0621446984202994
AT1G63260_at 4.32669956066556 4.65387308917485 3.40589614811596 3.11530795169286 5.30173578831896 4.45927217363461 3.95747504236268 3.82934048545999 7.19405696009586 5.74130990987001 7.27237077635162 5.90616622973341 5.48748543077486 6.17717792398141 5.90142213988242 4.93176340259259 4.1884986540826 6.40233382110317 6.16823356672637 0.22710277372802 0.224482893808152 0.235160991548971 0.238949476227754 0.231128927159611 0.228636552737616 0.233805607377052 0.227826548328903 0.231551100827472 0.224482893808152 0.233617340340919 0.224482893808152 0.228130109566200 0.233956399822555 0.242366275874 0.225670739399271 0.241275381868976 0.230927792821116 0.242142882200631 1 0|1 /|- 23470781 23471731 23471098 23470411 23472869 - gene protein_coding_gene FALSE TRUE AT1G63260.1|AT1G63260.2|AT1G63260.3 TET10 (TETRASPANIN10) Member of TETRASPANIN family similar to TET3 (TETRASPANIN3) [Arabidopsis thaliana] (TAIR:AT3G45600.1); similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein DH [Zea mays] (GB:AAV31120.1); similar to Os10g0503600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064999.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301)|similar to TET8 (TETRASPANIN8) [Arabidopsis thaliana] (TAIR:AT2G23810.1); similar to senescence-associated protein DH [Zea mays] (GB:AAV31120.1); similar to Os10g0503600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064999.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) -0.352879271946581 -2.65495970957988 0.0278367378116896 1 3.3965385897308 10.2068345846999 -0.352879271946581 0.165775838393995
AT1G63050_at 5.86272226820212 6.25301278969251 5.68462667559679 5.80936339177422 6.27713232932252 5.3561187926573 6.9356426950705 6.63614874198507 6.06609435976137 5.25084896296802 5.06381085228735 5.6039668714012 5.33122942525693 5.63195050443677 5.67547419403476 5.37400439439163 5.37918938586381 5.45035161717854 5.35011419744588 0.198211752984528 0.185905267601524 0.204098511544941 0.19262755657744 0.187667355134533 0.207556853019447 0.196779885604101 0.191609109586197 0.193273945682158 0.201631308251136 0.189828522823242 0.190879098333473 0.188384665679276 0.188779526716025 0.195081921066066 0.188286161205029 0.190706270930428 0.185905267601524 0.188630163737518 1 1|0 -|/ 23379747 23380735 23380147 23379549 23381956 - gene protein_coding_gene FALSE TRUE AT1G63050.1 membrane bound O-acyl transferase (MBOAT) family protein similar to membrane bound O-acyl transferase (MBOAT) family protein [Arabidopsis thaliana] (TAIR:AT1G12640.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL58542.1); similar to Os02g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047723.1); contains InterPro domain Membrane bound O-acyl transferase, MBOAT; (InterPro:IPR004299) -0.378505005425947 -2.65331318532289 0.0279096015099923 1 3.39416731965629 11.5990624583700 -0.378505005425947 0.181983127760084
AT4G36210_at 9.9672201355646 10.1207565640479 10.0884262237009 10.1515911753356 10.1036172397290 9.70791609537911 9.2198777171615 9.43116449272384 9.28698928208262 8.91762054621265 9.27460158907298 9.29156894314515 9.13916973467745 9.30526736501207 8.57771261501085 9.24874264603242 9.13623178782522 8.97764171291279 8.72700079886456 0.149243142030932 0.142693010252793 0.144520748246216 0.146513943333834 0.142693010252793 0.149079490198723 0.152178034482988 0.142693010252793 0.150661517529261 0.160558827921689 0.144122120125785 0.145489028185596 0.148245433457363 0.147641294830133 0.155340509955010 0.142693010252793 0.164648772324359 0.164498375577244 0.151982208168468 4 4|0 +|/ 17132785 17134266 17133426 17130249 17134659 + gene protein_coding_gene FALSE TRUE AT4G36210.1|AT4G36210.2|AT4G36210.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G18100.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93615.1); similar to Os03g0112800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048731.1); contains InterPro domain Protein of unknown function DUF726; (InterPro:IPR007941) 0.234898231493107 2.65269497672689 0.0279370091972329 1 3.39327699179505 18.8968565012542 0.234898231493107 0.0827745517811722
AT3G17780_at 7.72430212676623 7.51781815787289 6.84718569755522 6.74238366851316 7.13424706761947 7.17174669608116 7.12998575109034 6.94695527642132 6.49576069796585 6.38856569901162 6.78936736984303 6.82008125407294 5.76681014478215 6.62739217266216 7.0242240083941 5.66931192919741 5.66058868619004 6.10155541212945 6.18659665694264 0.200075443320682 0.196825190092905 0.193566700903986 0.208337268374519 0.211460248744425 0.208769894373568 0.205355853852363 0.200212586858570 0.208969306332194 0.200279000899868 0.196526735998591 0.198421030459377 0.203737181056491 0.204724131709983 0.204808607713954 0.195424814735688 0.216894019272112 0.199359773995959 0.196842372362614 3 3|0 +|/ 6087038 6088076 6087493.778 6086919 6088377 + gene protein_coding_gene FALSE TRUE AT3G17780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48440.1); similar to Os02g0734900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048043.1); similar to Os03g0240700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049510.1); similar to Erwinia induced protein 2 [Solanum tuberosum] (GB:AAO32066.1) -0.202716262371619 -2.65247302664441 0.0279468558207499 1 3.39295734454982 13.4840234169728 -0.202716262371619 0.0514893527165389
AT3G25690_at 11.2188682296262 11.3841431115688 11.3413445725510 11.3566940946633 11.6114735955473 11.5570793301205 11.6491503393134 11.7492078859285 11.6438410960343 11.8094529252135 11.3934406750858 11.1633682131968 11.5132826417458 11.3770759766358 11.0721569461221 11.7736250217904 11.4458030029382 11.5295955670331 11.8135538129890 0.0812137762506658 0.0686066003278062 0.0706027039374612 0.0696888049686933 0.0694504767921972 0.0712479811237833 0.072057671154407 0.0739352550145717 0.0788298224430667 0.0700493746596706 0.0711449206500128 0.0716725660814198 0.0701503066041677 0.0745679217707917 0.0742442322771958 0.0697781051328305 0.0766938750009495 0.0690162028932263 0.0692762744802079 3 0|3 /|+ 9358165 9358737 9358461.75 9355076 9359136 + gene protein_coding_gene FALSE TRUE AT3G25690.1 CHUP1 (CHLOROPLAST UNUSUAL POSITIONING 1) actin binding protein required for normal chloroplast positioning similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT4G18570.1); similar to Os12g0105300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065931.1); similar to unnamed protein product; contains similarity to pherophorin gene_id:T5M7.14-related [Medicago truncatula] (GB:ABE90672.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.190383466282872 -2.65133356634962 0.0279974626101392 1 3.3913163165044 23.0655748700719 -0.190383466282872 0.0348358836982328
AT3G18280_at 9.03663015623276 9.38717495917189 8.76297405631039 8.96130244363336 8.35528808113738 8.25705035851296 9.81572662489057 10.0028646334206 9.15698454919042 9.16128405131971 9.8024346977983 9.787306358573 9.12410548015404 9.6123659041941 10.0062502376633 9.1489332013173 9.17513962176806 9.77295967867735 8.79342905070975 0.128464284511542 0.131393431846532 0.138015626528794 0.132992160813844 0.129369995661748 0.140780310149788 0.133271099916690 0.133526469931314 0.140834061134790 0.128160895247662 0.128160895247662 0.128160895247662 0.134983348348531 0.128160895247662 0.129091081810978 0.128160895247662 0.131059450810597 0.128160895247662 0.133184828028548 3 3 + 6267118 6267363 6267250 6267055 6267649 + gene protein_coding_gene FALSE TRUE AT3G18280.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G48750.1); similar to TED4 [Zinnia elegans] (GB:BAA06462.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.22999550570944 -2.65065136150541 0.0280278059424793 1 3.39033381527673 18.3678361381261 -0.22999550570944 0.0787136417952083
AT4G13360_at 8.80527503453565 8.89682837429067 9.03077068720454 9.20431143764636 9.20310311573569 8.5347688655965 8.95121852585568 8.56313302859926 7.63012635160998 8.03069632310796 8.0772252477797 8.14918926147288 8.19418878721074 8.14373121922524 8.34698130302551 8.29942734650787 8.41439594321885 8.09249141907328 7.69312254624456 0.183014740999865 0.175295596964115 0.180890376830901 0.175245129850462 0.175939229144801 0.182525735751024 0.175245129850462 0.177748749526978 0.201183743509976 0.177573931522058 0.181890555579568 0.178404574826397 0.185955951405617 0.180690387550272 0.181604573669954 0.179496744360970 0.182880508173596 0.175245129850462 0.190793508016873 4 4|0 +|/ 7776730 7777439 7777065.7 7775124 7777851 + gene protein_coding_gene FALSE TRUE AT4G13360.1 catalytic similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT3G24360.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABE91609.1); similar to Os06g0594100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057978.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.309590097338605 2.65024715962614 0.0280457999468817 1 3.38975168861028 16.8983522451464 0.309590097338605 0.137986482538277
AT1G59650_at 5.68690308596513 6.31896664953914 6.25759374002853 6.22205851446697 6.25012046186079 6.10496235787125 5.46117643588259 5.80113174990775 5.57572593702286 5.54179738949584 5.97066988632604 6.23046993903447 5.75363650864103 5.94969728142191 5.54960732575003 5.73244472273394 5.34599852532077 5.3569143985769 5.50686745691335 0.252538615507204 0.252270418163662 0.253529318765353 0.260621931661018 0.243855381078756 0.262769354460073 0.242066166066941 0.244823389053076 0.256614804189653 0.247356546162776 0.24708386284963 0.247777732847576 0.242066166066941 0.250260964106111 0.251800949237483 0.24514179176901 0.267352585546569 0.253262275316488 0.245625980306877 1 1 + 21925519 21926299 21925899.727 21923410 21926588 + gene protein_coding_gene FALSE TRUE AT1G59650.1 CW14 Encodes CW14. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10410.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98316.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769) 0.293177758615756 2.64965464900923 0.0280721982011781 1 3.38889836045721 11.6516858334168 0.293177758615756 0.126863066971935
AT1G23260_at 8.76995476758803 9.0128988614052 8.9808100192412 8.95702653773764 9.02311213867176 8.9126235417414 8.70976308943133 8.73460999512196 9.29065037506672 8.83444172356498 9.5349909792894 9.44526732419202 9.1876631420932 9.49971106886335 9.11310444082068 9.35654255205694 8.85537148637146 9.0743301590065 8.94394238499212 0.110959807028970 0.109966305858257 0.112747241427502 0.118932350067945 0.112378204748494 0.115417499892259 0.120009822071059 0.108919141873514 0.121433379082646 0.114705962393645 0.112620788573410 0.10766038592573 0.112597385820205 0.112735362323456 0.109034018908543 0.108545302033223 0.121795397195210 0.117832472275704 0.115252930843378 1 0|1 /|- 8257200 8257716 8257549.5 8256975 8258677 - gene protein_coding_gene FALSE TRUE AT1G23260.1 MMZ1 (MMS ZWEI HOMOLOGE 1); ubiquitin-protein ligase similar to MMZ2 (MMS ZWEI HOMOLOGE 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G70660.1); similar to ubiquitin-conjugating enzyme 2 [Arachis hypogaea] (GB:AAZ20287.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.198473765253392 2.64960819811259 0.0280742688061451 1 3.38883146224288 18.0282919381813 0.198473765253392 0.0465682947485301
AT2G46690_at 9.0972494655694 9.25066688984611 9.31318694820512 9.31927419103401 10.2823045920750 9.78263084332218 10.0998934282488 9.7422294635207 8.3336068179515 9.08995857887123 8.92136272028817 8.73280088998577 8.73496168394822 9.18538570633483 8.4630392710307 9.33090047538702 9.90388462522593 9.01794764697047 8.4526556345385 0.111606239809874 0.106035439245467 0.113012870649336 0.108569361016527 0.106035439245467 0.114440198471534 0.108346570844448 0.109971294653823 0.123814412987735 0.110435395675573 0.111811717393897 0.106035439245467 0.111460682469338 0.110260318953455 0.114835048661044 0.108964513400239 0.108700109297935 0.112733254960613 0.108892695612078 2 2 + 19187998 19188315 19188173.455 19187800 19188537 + gene protein_coding_gene FALSE TRUE AT2G46690.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G61900.1); similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G00880.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.268858849402731 2.64916413317441 0.0280940713814590 1 3.38819192288665 18.4417756716527 0.268858849402731 0.109609513654921
AT2G38280_at 7.3122509916298 7.49797056964384 7.15659217283125 7.13452630129863 7.62534251892994 7.30818099057361 7.59607589942562 7.65966632740153 6.59362620516675 6.86329522026155 6.15130154850419 6.90719011620498 6.51452862960262 6.38869960263215 6.34180001914302 6.93644124003935 6.68597836895868 6.46431704675931 6.84637405888236 0.205677165884025 0.202464913151211 0.215022231003972 0.207157440174718 0.209865999640708 0.207401247832504 0.206517356478358 0.207849914707326 0.224659561343726 0.202804712416832 0.22709835700155 0.204949457503582 0.202555425806966 0.205590356851005 0.229219691616113 0.203313724774293 0.218395818522986 0.207725838869504 0.204793816755303 2 2|0 -|/ 16040861 16041948 16041515.6 16040526 16045954 - gene protein_coding_gene FALSE TRUE AT2G38280.1|AT2G38280.2 FAC1 (EMBRYONIC FACTOR1); AMP deaminase Encodes a protein with in vitro AMP deaminase activity that is involved in embryogenesis. Homozygous mutant embryos fail to develop past the zygote stage. Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EMBRYONIC FACTOR 1) (AMPD) [Arabidopsis Thaliana] (GB:O80452;GB:Q56XX1;GB:Q93ZR9); similar to Adenosine monophosphate deaminase (ISS) [Ostreococcus tauri] (GB:CAL52566.1); similar to Adenosine/AMP deaminase active site [Medicago truncatula] (GB:ABE79614.1); similar to AMP deaminase [Dictyostelium discoideum] (GB:AAF65407.1); contains InterPro domain Adenosine/AMP deaminase; (InterPro:IPR001365); contains InterPro domain AMP deaminase; (InterPro:IPR006329)|Identical to AMP deaminase (EC 3.5.4.6) (AtAMPD) (Protein EMBRYONIC FACTOR 1) (AMPD) [Arabidopsis Thaliana] (GB:O80452;GB:Q56XX1;GB:Q93ZR9); similar to Adenosine monophosphate deaminase (ISS) [Ostreococcus tauri] (GB:CAL52566.1); similar to Adenosine/AMP deaminase active site [Medicago truncatula] (GB:ABE79614.1); similar to AMP deaminase [Dictyostelium discoideum] (GB:AAF65407.1) -0.214656770536595 -2.64837455725499 0.0281293167253393 1 3.38705477855641 14.0695993379255 -0.214656770536595 0.0646617638488377
AT1G76700_at 5.24996160962864 5.16927821653377 5.42483169079383 5.33669260252406 5.42560225364113 5.96569030995677 4.55932110934673 4.23888906880360 4.58964953259364 4.12700693076181 4.1819855697375 3.98992486264162 4.0577768343534 3.65037481078314 4.35760429374838 4.36740326606787 4.43065901871061 4.27032321724051 4.35401118964453 0.237727204165562 0.230565550317086 0.239606866488801 0.232474539807822 0.229958670679317 0.240924108083049 0.231241178927292 0.231399034797337 0.239859244687025 0.244428724391785 0.232590264726730 0.228368576267894 0.231906416077464 0.236222397552946 0.237155524775597 0.233080213854511 0.232168607351135 0.243733792400282 0.233870968728751 1 1|0 -|/ 28785521 28786614 28786064.5 28785302 28788142 - gene protein_coding_gene FALSE TRUE AT1G76700.1 DNAJ heat shock N-terminal domain-containing protein Identical to Chaperone protein dnaJ 10 (AtJ10) (AtDjC10) (ATJ10) [Arabidopsis Thaliana] (GB:Q8GYX8;GB:O04662;GB:Q9SRE3); similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21080.1); similar to DnaJ-like protein [Brassica juncea] (GB:AAW50121.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.270104489822242 2.64776326832986 0.0281566345213579 1 3.38617440048002 9.43135620856708 0.270104489822242 0.110626486157782
AT2G25970_at 8.09073939944183 7.95753088051849 8.20199209467446 7.99374892584078 8.05707320015074 8.32659887267753 7.30423193683869 7.69740918451165 7.40861714223603 7.63465277865913 7.53572951599558 7.61028566019045 7.70031142760302 7.96021294470765 7.52777921304927 7.88083655923493 7.6089245816826 7.40601773975161 7.58422221284454 0.161650941965007 0.153110455619115 0.154135261324447 0.157014049409004 0.152762258463355 0.154746159516327 0.152559821160771 0.154390056198980 0.163268852244375 0.158484980361559 0.153761956859373 0.150815065486909 0.153997562719992 0.157195217874799 0.156815798614621 0.152097459729934 0.154674915500787 0.159853011558317 0.157908799486869 2 2 - 11079013 11079488 11079223.636 11078729 11082747 - gene protein_coding_gene FALSE TRUE AT2G25970.1 KH domain-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to Os08g0110800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060823.1); similar to Os02g0224300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046334.1); similar to PREDICTED: similar to Far upstream element binding protein 1 (FUSE binding protein 1) (FBP) (DNA helicase V) (HDH V) isoform 15 [Canis familiaris] (GB:XP_867803.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.246820125185936 2.64761093921708 0.028163446132121 1 3.38595501588304 15.5517953534268 0.246820125185936 0.0929260301129594
AT3G45100_at 5.28443051364265 4.56828257819434 4.50457622255667 4.16511668655607 5.34138352215416 4.59152353180883 5.28852525161883 4.88838416263563 4.99099866062156 5.28819673162825 4.36740289254342 4.94226233417298 4.49306455498354 4.65766707432231 4.7534824060295 4.58364780182259 4.77524441035473 5.25614461792673 5.28784660687644 0.221279746396603 0.219838598661262 0.220522563845666 0.220068578922762 0.231291910167144 0.232517757255749 0.239043311314439 0.226719843751593 0.251099817421541 0.22465387746924 0.220620323260440 0.219838598661262 0.223729810990845 0.227616246174825 0.226492204632872 0.223936248887269 0.227400478979908 0.226073546517168 0.226382200737408 3 3|0 +|/ 16516843 16517786 16517461.875 16515445 16518389 + gene protein_coding_gene FALSE TRUE AT3G45100.1|AT3G45100.2 SETH2; transferase, transferring glycosyl groups encodes Arabidopsis homolog of a conserved protein involved in the first step of the GPI biosynthetic pathway. similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G73160.1); similar to putative Phosphatidylinositol N-acetylglucosaminyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC10070.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296); contains InterPro domain PIGA, GPI anchor biosynthesis; (InterPro:IPR013234) -0.408577561971603 -2.64622554620614 0.0282254729140982 1 3.38395976626488 9.78784206426 -0.408577561971603 0.201108844711787
AT1G55510_at 5.12218006382471 5.22973770662845 4.87533624989279 4.49418127971173 6.78502469667756 5.71032502016972 5.0032722193918 4.57721762727471 4.36300046883042 5.00158785814999 5.23828063620323 5.18525804437616 5.22326255723292 5.62488216487228 5.02106719498989 4.81621960021527 4.79338677357612 5.22585785597041 4.95384845046253 0.251310162147419 0.242395017759876 0.249319412249370 0.247629798197083 0.249391083465119 0.258079288639301 0.246546626824855 0.242395017759876 0.246613654686335 0.245308063841601 0.251203435241024 0.242395017759876 0.250490083310405 0.252961824617584 0.256212000306614 0.248202362624593 0.251954774240477 0.244548506087789 0.246108923135349 1 1|0 +|/ 20728118 20729028 20728530.4 20726968 20729334 + gene protein_coding_gene FALSE TRUE AT1G55510.1 BCDH BETA1 (BRANCHED-CHAIN ALPHA-KETO ACID DECARBOXYLASE E1 BETA SUBUNIT); 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) branched-chain alpha-keto acid decarboxylase E1 beta similar to DIN4 (DARK INDUCIBLE 4), 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) [Arabidopsis thaliana] (TAIR:AT3G13450.1); similar to branched chain keto acid dehydrogenase E1, beta polypeptide [Gallus gallus] (GB:NP_989988.1); similar to Os07g0170100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058989.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) 0.425664750807458 2.64614274779237 0.0282291843592679 1 3.38384051933409 10.1815789142350 0.425664750807458 0.211477448940875
AT2G17980_at 7.66432753890979 7.69070811511898 7.50844932493707 7.57290971053389 7.31579531072906 7.42024183155142 6.8695954043076 7.35202025925315 7.46980693843046 7.21306557620464 7.62733087366826 8.00416714389842 7.69615570991267 7.90919776309211 7.90570841120897 7.82298395781334 7.71557680044546 7.4707538847215 7.37500827851919 0.144005581742529 0.142569003760863 0.153139440997347 0.145232179016349 0.138619365763609 0.149822634133866 0.145876466733190 0.146016535994922 0.154033885072767 0.141348977058680 0.142597743649358 0.144695083478803 0.146027259911360 0.149032504536850 0.139512769537544 0.142081134772103 0.140742492312471 0.144448321070661 0.140449455442881 2 2 + 7832953 7833460 7833216.182 7831248 7833679 + gene protein_coding_gene FALSE TRUE AT2G17980.1 ATSLY1; protein transporter member of SLY1 Gene Family Identical to SEC1-family transport protein SLY1 (AtSLY1) (SLY1) [Arabidopsis Thaliana] (GB:Q9SL48); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31740.1); similar to Vesicle trafficking protein Sly1 (Sec1 family) (ISS) [Ostreococcus tauri] (GB:CAL52374.1); similar to Os03g0620800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050677.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.238271801042071 2.64382149668475 0.0283334368464324 1 3.38049742400441 14.9850615614909 0.238271801042071 0.0862662992400417
AT3G01690_at 10.6519231243517 10.5173357542798 10.2298546947904 10.1271975866257 10.6964096213103 10.4668661013299 10.7330345691608 10.6237000948392 10.8879030192836 11.1659249708463 11.2105257098495 11.0483466096351 11.2865867672951 11.0201663864369 10.8317792103034 11.2176860803656 10.8941524071993 11.1362815471843 11.6530235075573 0.069220857097188 0.0655852537842914 0.0660376291682394 0.0659128567603006 0.0649353274912649 0.0699067617510072 0.0652626471939753 0.0664811936557971 0.0677876186224455 0.0652941211942708 0.0668396695829257 0.0652923846512407 0.0636105028443215 0.0669156032655473 0.0651851207638395 0.0637290235877391 0.0690810301973343 0.0670228262273124 0.0641792249207636 3 3|0 +|/ 257806 258361 258140.8 256544 258554 + gene protein_coding_gene FALSE TRUE AT3G01690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14390.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.203171480377949 -2.64307817167491 0.0283669038952215 1 3.37942687363499 21.6639440711757 -0.203171480377949 0.0528586389708114
AT2G44065_at 6.40304269195086 6.24731348568347 6.19590228634672 6.488251611507 5.65167672659569 5.93089037896405 5.75032020202538 5.48480840622536 6.19840009933745 5.72013464357923 5.82407131241528 6.4923984596563 6.22995914288346 6.28875192201975 6.37244030249976 6.00463982279545 6.21151820588836 6.09916504056943 5.49733739627065 0.204141026728919 0.204416801824167 0.207432370070649 0.210114810659753 0.204141026728919 0.217881786294373 0.205949856898238 0.212923497620396 0.218128028132746 0.209879010450848 0.206475895196711 0.204277980265644 0.204141026728919 0.204758913158981 0.206651125607656 0.210657469438000 0.227132110261268 0.209640538222235 0.212672627106728 2 2 + 18235993 18237266 18236903.273 18235549 18238483 + gene protein_coding_gene FALSE TRUE AT2G44065.1|AT2G44065.2 ribosomal protein L2 family protein similar to ribosomal protein L2 [Gossypium arboreum] (GB:AAK95391.1); contains InterPro domain Ribosomal protein L2, bacterial and organelle form; (InterPro:IPR005880); contains InterPro domain Ribosomal protein L2; (InterPro:IPR002171); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) 0.240193183705312 2.64276948468188 0.0283808138544070 1 3.37898229638079 12.0168550932390 0.240193183705312 0.0879309276494154
AT3G11945_at 9.2899827250211 9.40720166843628 9.0652586091975 8.9917561801956 8.93245035195445 8.53085969473529 9.92559223910972 9.93299963763504 9.60445242014847 9.4112768433108 9.72812743943896 9.83483053014596 9.4860320098118 9.75261224052944 9.97819970198712 9.9464773537074 9.31506926784724 9.84131418649169 9.254381164198 0.110820321351365 0.10926915276029 0.124523932506852 0.122123694987573 0.110641236878172 0.121881128289961 0.121339798589537 0.116152089879124 0.118080597909902 0.108043350815884 0.110880834061403 0.108043350815884 0.108043350815884 0.110598740460563 0.113071229505465 0.108043350815884 0.122615934647724 0.111456939379011 0.117989819361259 3 3|0 -|/ 3780053 3781462 3780827 3779845 3782960 - gene protein_coding_gene FALSE TRUE AT3G11945.1 prenyltransferase similar to HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1), prenyltransferase [Arabidopsis thaliana] (TAIR:AT2G18950.1); similar to homogentisate phytyltransferase VTE2-2 [Glycine max] (GB:ABB70128.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537) -0.223450079918648 -2.64216799822829 0.0284079377787415 1 3.37811602250786 18.8388641301843 -0.223450079918648 0.0735172413302038
AT2G21790_at 4.47187240008116 5.19169079595301 4.95339412279025 4.86328238966687 3.73361468564449 3.5465307095564 5.64954748509957 5.11110751050207 5.06493157237438 5.07611966400173 4.68473820230256 6.05087991019728 4.07609708298746 4.68587560403966 6.407096992279 5.07237520232558 5.09715259562465 5.17969658406596 4.88290068010585 0.197466672322601 0.195508814872445 0.194871598677310 0.196247019144625 0.199760737749478 0.202220715079914 0.192840434132127 0.196344318593977 0.190121711533986 0.190121711533986 0.190446507287338 0.198066242314932 0.199008382199298 0.195999573606633 0.192728566965602 0.199323024926938 0.193876724279445 0.190537091860089 0.190121711533986 2 2 + 9303667 9304629 9304140.455 9300435 9304922 + gene protein_coding_gene FALSE TRUE AT2G21790.1 R1/RIBONUCLEOTIDE REDUCTASE, REDUCTASE PROTEIN R1; ribonucleoside-diphosphate reductase encodes large subunit of ribonucleotide reductase involved in the production of deoxyribonucleoside triphosphates (dNTPs) for DNA replication and repair Identical to Ribonucleoside-diphosphate reductase large subunit (EC 1.17.4.1) (Ribonucleoside-diphosphate reductase R1 subunit) (AtRNR1) (RNR1) [Arabidopsis Thaliana] (GB:Q9SJ20;GB:O82573); similar to ribonucleotide reductase large subunit A [Glycine max] (GB:AAN87547.1); similar to ribonucleotide reductase [Nicotiana tabacum] (GB:CAA71816.1); similar to putative ribonucleotide reductase large subunit [Musa acuminata] (GB:AAR95994.1); contains InterPro domain Ribonucleoside-diphosphate reductase, alpha subunit; (InterPro:IPR013346); contains InterPro domain Ribonucleotide reductase large subunit; (InterPro:IPR013508); contains InterPro domain Ribonucleotide reductase large subunit, N terminal; (InterPro:IPR013509); contains InterPro domain Ribonucleotide reductase R1 subunit, N-terminal; (InterPro:IPR008926); contains InterPro domain Ribonucleotide reductase large subunit, C-terminal; (InterPro:IPR000788); contains InterPro domain ATP-cone; (InterPro:IPR005144) -0.341547010713666 -2.64155411583326 0.0284356478722818 1 3.37723189453569 9.77249150935594 -0.341547010713666 0.159658911173004
AT1G16000_at 4.89872188364522 5.54756415622676 5.08331678627666 5.06974118866312 4.45808876597847 3.93628697394665 5.1277996237156 5.63207509966228 5.24129011984401 5.00419249748979 4.94995738974425 5.24339524391372 4.63621866315662 5.16430932652499 5.98086487250025 4.83943928724121 5.01051884147953 4.81586428200829 5.13262041759978 0.260286518892155 0.255479814059519 0.262515313681969 0.263524209607925 0.253715235960132 0.260192009672695 0.264294514280507 0.265532928960404 0.268254406152670 0.253817313678792 0.26229207792805 0.2546897300161 0.260692739751264 0.259953791826969 0.253715235960132 0.255980009544523 0.280434855649792 0.258276326133655 0.263827511651653 1 1 + 5494581 5495117 5494803.364 5494527 5495353 + gene protein_coding_gene FALSE TRUE AT1G16000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80890.1); similar to Os12g0556400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067003.1); similar to hypothetical protein LOC_Os12g36930 [Oryza sativa (japonica cultivar-group)] (GB:ABA99557.1) -0.355322559376497 -2.64143650388956 0.0284409599044889 1 3.37706250689426 10.0722519764138 -0.355322559376497 0.168473088846189
AT2G25950_at 6.59385833895013 6.63860893803734 4.94851604433286 6.27278273528421 7.09233537622186 5.79314619409745 6.01814952095077 5.93987857911868 3.38816800045855 5.45600342348383 6.02999613387831 6.36188288577436 6.11246953792728 5.91770943687368 6.58194421699308 5.85246131248746 6.33843386945598 6.39270032340816 5.26550409789206 0.226598259401724 0.226717255331246 0.230560401442689 0.225633287649210 0.222435966341037 0.236757396010637 0.228967874021533 0.224087550369074 0.237538916066491 0.229847277994854 0.239993763281555 0.222435966341037 0.229815461520806 0.236858371433112 0.240410666235 0.223138503946166 0.245341120272491 0.225735518901436 0.226287343527616 2 2|0 +|/ 11075845 11077262 11076574.714 11075722 11077739 + gene protein_coding_gene FALSE TRUE AT2G25950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04780.1); similar to Os01g0559000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043339.1); similar to hypothetical protein DDBDRAFT_0204321 [Dictyostelium discoideum AX4] (GB:XP_642028.1); contains InterPro domain Protein of unknown function DUF1000; (InterPro:IPR010400); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.612147891937419 2.63968263669892 0.0285202944391953 1 3.37453653906974 11.6129969101465 0.612147891937419 0.321420971024535
AT3G05000_at 7.74569365032135 7.71619170713829 6.6946424394973 7.12957410348021 7.62547223014751 7.17026904043063 7.47369250214862 7.65178094967097 7.27263031141647 7.40553871702175 7.25171140416588 7.69751892094253 7.25799346940087 7.24979455208436 7.95474325109782 7.04635140544559 7.05641051538582 6.98481728186344 7.42087893630764 0.189945300578322 0.195872632510035 0.199968754584752 0.204492449263217 0.190168625297103 0.197606198411101 0.196732071631424 0.199696639927691 0.196384866824163 0.191300069439213 0.198693810172749 0.189087287842430 0.190556687439257 0.19816581197661 0.191992149168316 0.194516581864346 0.200429158600828 0.188987256173865 0.190510635780673 3 3|0 -|/ 1387657 1388620 1388015.1 1387181 1388762 - gene protein_coding_gene FALSE TRUE AT3G05000.1 transport protein particle (TRAPP) component Bet3 family protein similar to Transport protein particle (TRAPP) component, Bet3 [Medicago truncatula] (GB:ABE83658.1); contains InterPro domain Transport protein particle (TRAPP) component, Bet3; (InterPro:IPR007194) -0.272890985232277 -2.63860563571624 0.0285691230174736 1 3.37298540854715 14.7402980386695 -0.272890985232277 0.113342396941222
AT3G01850_at 7.05858742310307 6.81696653234814 6.92418532709271 6.88424786488098 7.7583744257119 7.22679980272334 6.18527373383794 6.30808352871255 6.45552747962886 6.38016130656447 6.39978586273259 6.31334483343164 6.46453715527462 6.7191698918332 6.4323216013652 6.50655112713476 6.42830325534144 6.18235613354368 6.71888932521138 0.184246565828837 0.185594356756040 0.189492666312284 0.193000879978333 0.18831515110311 0.189194419206861 0.193499187065903 0.189491913192168 0.187689288667828 0.191506759185011 0.187928223728367 0.183162186565573 0.185810042306850 0.186593054170866 0.187055827424876 0.187624410579207 0.193581272375555 0.186050162270274 0.183862488788247 3 3|0 -|/ 300440 301362 300776 299994 302045 - gene protein_coding_gene FALSE TRUE AT3G01850.1|AT3G01850.2 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative similar to ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative [Arabidopsis thaliana] (TAIR:AT1G63290.1); similar to Ribulose-phosphate 3-epimerase, cytoplasmic isoform (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5-phosphate 3-epimerase) (PPE) (GB:Q9SE42); contains InterPro domain Ribulose-phosphate 3-epimerase; (InterPro:IPR000056); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060) 0.259388789691189 2.63657021314392 0.0286616362491159 1 3.37005392208642 13.3698092979932 0.259388789691189 0.103490375892197
AT3G09630_at 10.3984338858752 10.7009237790847 10.3007782857633 10.2621275666106 10.2982875245095 9.98464997582568 10.6453464726778 10.7373951468949 10.0766820295933 10.2433488563430 10.2305207894613 10.5141619461481 10.020710856998 9.91301942987584 10.5630423658801 9.92607818087637 9.67869728713916 9.87864638663294 10.0878312304957 0.102095411552162 0.0975668271932953 0.0975668271932953 0.0996594631887867 0.100369870403534 0.109565570817591 0.100304421751605 0.0996845444394462 0.122949427486727 0.101107148910627 0.0975668271932953 0.0979195053061302 0.0982602455829998 0.109860636809605 0.102229793556815 0.0975668271932953 0.123836778858758 0.105182102978417 0.100020217609346 3 3 + 2954442 2955386 2954802.273 2953742 2955753 + gene protein_coding_gene FALSE TRUE AT3G09630.1|AT3G09630.2 60S ribosomal protein L4/L1 (RPL4A)|structural constituent of ribosome Identical to 60S ribosomal protein L4-1 (L1) (RPL4A) [Arabidopsis Thaliana] (GB:Q9SF40); similar to 60S ribosomal protein L4/L1 (RPL4D) [Arabidopsis thaliana] (TAIR:AT5G02870.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71290.1); similar to putative 60S ribosomal protein L1 [Trifolium pratense] (GB:BAE71215.1); similar to 60S ribosomal protein L4 (L1) (GB:Q9XF97); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136); contains InterPro domain Ribosomal protein L4/L1e, archeabacterial like; (InterPro:IPR013000) -0.227204183195033 -2.63614793301338 0.0286808676669711 1 3.36944573851300 20.5292746767488 -0.227204183195033 0.077360561143969
AT2G27900_at 5.69982213703444 5.7462812338828 5.67944875063204 5.78836065957185 6.14728346578921 5.69058423716987 5.66435885910366 5.4422451883617 4.99645328338248 4.80844481575383 5.25009441100223 5.0653339165937 5.25402491708707 5.20473459331788 5.10725661647874 5.129656179745 5.06690973366604 5.44413551055795 4.87615356037619 0.130142590661929 0.128616533135237 0.133125665680398 0.133812870787881 0.132168699300923 0.132433479320448 0.131757017031811 0.131038819075747 0.138999695777174 0.132858295218054 0.133292336789946 0.129061419794918 0.12908660806786 0.130353713766789 0.134682383579096 0.128001300652511 0.135752916277124 0.133123746286393 0.134213925368023 2 2|0 +|/ 11885557 11892213 11889321.217 11884507 11893090 + gene protein_coding_gene FALSE TRUE AT2G27900.1|AT2G27900.2 similar to Os10g0546300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065215.1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36336.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79598.1); contains domain Ribosomal protein S5 domain 2-like (SSF54211); contains domain no description (G3D.3.30.970.10); contains domain gb def: Hypothetical protein At2g27890:At2g27900:At2g27910 (At2g27890) (PTHR13258:SF4); contains domain FAMILY NOT NAMED (PTHR13258) 0.242413385998497 2.63608504345313 0.0286837328956141 1 3.36935516259872 10.7742741270983 0.242413385998497 0.090242476847965
AT1G14270_at 8.98809395452895 9.00227436341162 8.60130910252679 8.37999628148202 9.02170332336334 8.7101746637575 9.70162670590345 9.24201084133 8.64096482588199 9.36015789211563 9.3966981704194 9.31094907218818 9.09047072169706 9.07423910570904 9.4099340385782 9.23559875904702 8.7956874589929 8.80698359571991 9.30922433567803 0.158334101415325 0.150410481324092 0.152540299027313 0.161923238434393 0.156610170034603 0.162753031531951 0.153213989836399 0.155061848349061 0.206137697347827 0.147422044808784 0.152847213721966 0.151888572651353 0.149866313845459 0.163714378210307 0.156575486783900 0.151218759343515 0.173958851391810 0.166525497119563 0.149432261032956 1 1 - 4875228 4876162 4875657.091 4874870 4877243 - gene protein_coding_gene FALSE TRUE AT1G14270.1|AT1G14270.2|AT1G14270.3 CAAX amino terminal protease family protein similar to CAAX amino terminal protease family protein [Arabidopsis thaliana] (TAIR:AT5G60750.1); similar to CAAX amino terminal protease family protein, putative [Solanum tuberosum] (GB:AAU90306.2); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.259292263054506 -2.63588462724338 0.0286928657361344 1 3.36906651557668 18.0776582211309 -0.259292263054506 0.103468354172205
AT4G17520_at 8.82682533550532 8.90622305289695 8.58406778385393 8.53662307590609 8.72408451092498 8.4434592643147 8.85713277841708 8.94781559817785 8.86227481867912 9.09717967754937 8.87748148998213 9.08930780819122 8.80418765929393 8.77285742409047 9.20310127373668 8.89725805702551 8.63904321639551 8.74880552210879 8.95917623485263 0.128689224785328 0.126973439078397 0.133029230391915 0.129678604704976 0.124095152378744 0.129541441053074 0.126847683815493 0.124750173608700 0.127901186585995 0.132963602212084 0.133446537513771 0.125460386197981 0.130882711930118 0.134158973236499 0.124095152378744 0.129273597275919 0.129372210124510 0.128441299042195 0.127703406151524 4 4|0 +|/ 9772315 9773300 9772969.3 9771310 9773605 + gene protein_coding_gene FALSE TRUE AT4G17520.1 nuclear RNA-binding protein, putative similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to nuclear RNA binding protein, putative [Brassica oleracea] (GB:ABD65067.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861) -0.20315606825336 -2.63578598708638 0.0286973617911448 1 3.36892445025874 17.6542200333563 -0.20315606825336 0.0534873027609935
AT3G02190_at 7.48440121283577 7.75003077114762 7.8865599332255 8.15371195363292 7.37350616729786 7.01540380760044 6.58151521743349 7.05613782184393 6.25249452831752 6.86495956185129 6.99448422889832 6.82495974125309 6.82743180348792 6.4121984979562 7.09822275294901 6.8432148620118 7.06648089046495 6.22079250423144 6.70270401414296 0.176543032518703 0.176534583157650 0.176391038827946 0.17226619801852 0.174289332336933 0.174985918690139 0.172209360770376 0.172500667057122 0.182802936665448 0.174765717264949 0.175088452852700 0.169646416148086 0.174321679549467 0.176310305618825 0.174800987877391 0.170780183010555 0.182226653802620 0.176701753921211 0.171783966804735 3 3|0 -|/ 406012 406230 406152.4 405823 406408 - gene protein_coding_gene FALSE TRUE AT3G02190.1 60S ribosomal protein L39 (RPL39B) Identical to 60S ribosomal protein L39-2 (RPL39B) [Arabidopsis Thaliana] (GB:Q8L8W6;GB:Q9SRT6); similar to 60S ribosomal protein L39 (RPL39C) [Arabidopsis thaliana] (TAIR:AT4G31985.1); similar to putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD19088.1); similar to Os02g0797200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048394.1); similar to 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD72315.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) 0.284264000838322 2.63430748315054 0.0287648384082692 1 3.36679505067492 14.1090046247574 0.284264000838322 0.121808011293769
AT2G18670_at 7.06673671740242 7.71523885185689 6.61025151265037 6.75985706507792 7.54236890352989 7.34444641921787 5.28459196027263 5.90742151569543 5.56530869852514 5.08854562216412 5.18718935578856 5.41783138328731 5.84400757548904 5.57655519447701 5.22533250559441 5.72741295360268 5.95056999540911 5.25324077545835 5.5676875114952 0.210931082264449 0.212624141549677 0.214369763399415 0.214032815257320 0.231862245493608 0.217700044452744 0.213840882715629 0.212543369894568 0.229199932787291 0.214377351605913 0.215567719409770 0.213470689199307 0.207319188185588 0.207319188185588 0.228871984185595 0.207319188185588 0.220247977979758 0.217060673449929 0.218737895838514 2 2 + 8100551 8100986 8100759.818 8100302 8102046 + gene protein_coding_gene FALSE TRUE AT2G18670.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G30370.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE91399.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.343160285236163 2.63294529149627 0.0288271494137065 1 3.36483316609393 12.2438381572712 0.343160285236163 0.161417131192242
AT2G44530_at 6.94901315583618 7.04924675264638 7.03679602034725 7.41038634424719 7.73665809560227 7.39051247703825 7.33284990708548 7.36622155946553 6.88650020244332 5.8748601599681 6.3437617068323 6.28998184346484 6.65483912724344 6.8086059796771 6.63579729355114 6.64346560056145 6.6651026005663 6.50790127710057 6.15144501856046 0.184390234748568 0.186121702558434 0.18734605732123 0.180956041396515 0.184644791923851 0.178121258007705 0.178205379944433 0.188262673207984 0.180444277362000 0.179578922427329 0.181325482828837 0.178699294233497 0.192734500827083 0.178121258007705 0.188862393816479 0.178121258007705 0.189763194285260 0.183533634312259 0.185953718553979 2 2|0 +|/ 18392011 18392847 18392480 18390591 18393219 + gene protein_coding_gene FALSE TRUE AT2G44530.1|AT2G44530.2 ribose-phosphate pyrophosphokinase, putative / phosphoribosyl diphosphate synthetase, putative Identical to Ribose-phosphate pyrophosphokinase 5 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 5) (PRS5) [Arabidopsis Thaliana] (GB:O64888;GB:Q8L7T8); similar to ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) [Arabidopsis thaliana] (TAIR:AT1G32380.1); similar to ribose-phosphate pyrophosphokinase 1 / phosphoribosyl diphosphate synthetase 1 (PRSI) [Arabidopsis thaliana] (TAIR:AT2G35390.2); similar to Ribose-phosphate pyrophosphokinase 1 (Phosphoribosyl pyrophosphate synthetase 1) (GB:Q9XG98); contains InterPro domain Phosphoribosyl pyrophosphate synthetase; (InterPro:IPR000842); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946)|Identical to Ribose-phosphate pyrophosphokinase 5 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 5) (PRS5) [Arabidopsis Thaliana] (GB:O64888;GB:Q8L7T8); similar to ribose-phosphate pyrophosphokinase 2 / phosphoribosyl diphosphate synthetase 2 (PRS2) [Arabidopsis thaliana] (TAIR:AT1G32380.1); similar to Ribose-phosphate pyrophosphokinase 1 (Phosphoribosyl pyrophosphate synthetase 1) (GB:Q9XG98); contains InterPro domain Phosphoribosyl pyrophosphate synthetase; (InterPro:IPR000842); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) 0.241834429425515 2.63285926983882 0.0288310889207747 1 3.36470927408990 13.7204357335079 0.241834429425515 0.0900128758940605
AT1G35350_at 7.42388414717515 7.7397152472602 7.883109208943 8.14643244434641 8.63129449969097 7.99959915572871 8.32067531168198 8.09484057525828 8.41312410087635 8.25057547616502 8.5414024892125 7.25267644219766 8.04319829844187 8.13966490457566 6.13277996908438 7.12980233192356 7.59033231639784 7.1604165990746 8.47209723191306 0.159171989065337 0.150317523037907 0.155585352387800 0.153160444765435 0.163288983582598 0.159461894420698 0.159470705464250 0.152847986572681 0.168606010476751 0.152562275332418 0.157718378603141 0.161129948665639 0.156966081690340 0.161737858686952 0.179049370254864 0.156519321508257 0.161131370725524 0.161838557595487 0.156461785707181 1 1|0 -|/ 12981451 12981940 12981725.8 12981229 12984561 - gene protein_coding_gene FALSE TRUE AT1G35350.1 similar to SHB1 (SHORT HYPOCOTYL UNDER BLUE1) [Arabidopsis thaliana] (TAIR:AT4G25350.1); similar to EXS family protein / ERD1/XPR1/SYG1 family protein [Arabidopsis thaliana] (TAIR:AT1G26730.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14040.1); similar to SPX, N-terminal; EXS, C-terminal [Medicago truncatula] (GB:ABD32751.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.30474238031063 -2.63174853271518 0.0288820061652328 1 3.36310954326161 15.9686353763514 -0.30474238031063 0.136167602925425
AT2G25570_at 5.9610554285556 6.30574718015458 6.50849498306504 6.65857405575571 6.30517490951927 6.11533984112163 6.36705053985292 6.53366688745312 4.93529139490961 5.41643683865688 5.21037264991966 5.61115151372255 5.47400815549946 5.3887417263423 5.6603698333154 5.21992467999022 5.89869089488851 5.87076790545667 5.22255496927808 0.199652191196485 0.204324595423223 0.203724993185394 0.202617824790736 0.195518724666353 0.203085466086327 0.196320413775368 0.199750645679166 0.201307165541220 0.20169199379317 0.197976969635659 0.195518724666353 0.197042183530500 0.209084151470421 0.201462124948316 0.197360238783844 0.210246389612152 0.195518724666353 0.218469570581380 2 2|0 -|/ 10893032 10894443 10893776.667 10892776 10894999 - gene protein_coding_gene FALSE TRUE AT2G25570.1|AT2G25570.2 binding similar to Os02g0202600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046232.1); similar to Sel1-like repeat [Psychromonas ingrahamii 37] (GB:ZP_01350247.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.227670811985841 2.62822619514359 0.0290440785146027 1 3.35803651906635 11.7109785552714 0.227670811985841 0.0783795297045304
AT1G48950_at 4.95760766875116 5.34498022479714 4.25032395605017 5.16005814597568 5.45042226304629 5.36092659126245 5.81133967408516 6.0272683983074 4.82624309015478 4.8266680840499 4.68521538259665 5.25516856234939 4.56725828405003 4.7147828325741 4.71108784118452 4.84486081982969 4.75644855174815 4.28161406689334 5.27692204286775 0.25721319039048 0.259150313128633 0.268009731205433 0.264418682972540 0.257042696670075 0.277491379827271 0.259687574313723 0.253348653991301 0.270299874437489 0.252901735072153 0.256124421765258 0.253253383383286 0.270688825589033 0.256960038834828 0.264482730302121 0.255761371942682 0.257546699052713 0.251607347818537 0.260606484607899 1 1 + 18112687 18113713 18113122.545 18110565 18113905 + gene protein_coding_gene FALSE TRUE AT1G48950.1 zinc ion binding similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17210.1); similar to Os01g0605600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043521.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52672.1); contains InterPro domain Zinc finger, C3HC-like; (InterPro:IPR012935) -0.364711391052905 -2.62516545554704 0.0291856615565016 1 3.35362830995044 10.1471986727898 -0.364711391052905 0.175828008048978
AT3G47000_at 9.44458920344105 9.25714031794419 9.18478024041372 8.92322243281621 9.49829957162902 9.26073202545988 9.34546704838115 9.3774408242006 9.95079256589398 9.75825417667831 9.619027878052 9.53520210832725 9.37834403695316 9.59644266945696 9.50368064917496 9.59109285349767 9.25249126006604 9.5832133438252 9.70072312072567 0.0751298869717264 0.0754067287655832 0.083320186210146 0.0858902203970939 0.0778954061583254 0.084623130691244 0.0809739161941945 0.0825209749946742 0.0768219157877208 0.0751298869717264 0.0783466376370822 0.0753832638888113 0.0790355236180363 0.0789024217467291 0.0774647426299718 0.0751298869717264 0.0863780515091676 0.0768195618951605 0.0753471811736258 3 3|0 -|/ 17324851 17325435 17325109.7 17324631 17327548 - gene protein_coding_gene FALSE TRUE AT3G47000.1 glycosyl hydrolase family 3 protein similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47050.1); similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G47010.1); similar to glycosyl hydrolase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G47040.1); similar to putative exohydrolase [Oryza sativa] (GB:AAL58976.1); similar to exo-beta-glucanase [Lilium lon (GB:AAR14129.1); similar to beta-D-glucosidase [Gossypium hirsutum] (GB:AAQ17461.1); contains InterPro domain Glycoside hydrolase, family 3, C-terminal; (InterPro:IPR002772); contains InterPro domain Glycoside hydrolase, family 3, N-terminal; (InterPro:IPR001764) -0.217610276046108 -2.6245493521826 0.0292142457835573 1 3.35274097216498 18.9418056935450 -0.217610276046108 0.0694400535141312
AT3G17860_at 7.8515993791664 8.29966410679336 7.4286601984761 7.66366399488137 7.96926136778432 7.89409084472508 8.37618788429426 8.14094853596091 7.21571494228614 7.17019527476573 8.17981195087848 7.83098611185673 8.25749207704163 8.07139709258847 7.88600976093462 8.14097419537853 8.18921661835558 7.95424904219333 7.01925197188896 0.175924442154469 0.171750274531173 0.166373600562185 0.173318513793866 0.162501171044466 0.165334882879479 0.173515893647513 0.165045731542709 0.189634564660171 0.169233917905658 0.166001331429967 0.165404278998323 0.173041973162217 0.163167999523467 0.167387382736978 0.165146148477149 0.179953117502016 0.169208227201937 0.179876037011143 3 3|0 +|/ 6121772 6122661 6122168.556 6119773 6123017 + gene protein_coding_gene FALSE TRUE AT3G17860.1|AT3G17860.2|AT3G17860.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAD04851.1); contains InterPro domain ZIM; (InterPro:IPR010399)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48500.1); similar to hypothetical protein [Nicotiana benthamiana] (GB:BAD04852.2); contains InterPro domain ZIM; (InterPro:IPR010399) 0.250266084043068 2.62363759805649 0.0292565989604695 1 3.35142782658882 15.5524201235771 0.250266084043068 0.0974309964770286
AT2G38670_at 8.98421440225001 9.08122712880443 9.12934135906447 8.94563107320366 9.46285044427315 8.88010783668355 9.26054898420868 8.88065913715831 7.80742517842559 8.09725135196385 8.2887334817659 8.35763378306772 8.52894262064873 8.40594759253706 8.6366764765072 8.16636943341947 8.49983694383542 8.47192855150848 7.78149732869163 0.150907152886974 0.148804357118585 0.158378037735629 0.145872627812363 0.152606360977257 0.153745660209938 0.151563184946506 0.154154301512877 0.165433859753854 0.154585894746126 0.143247737776467 0.148535157697806 0.146733163981736 0.143136429516541 0.144153486382163 0.148773136302150 0.146436658750223 0.147744778179304 0.151120767150713 2 2|0 +|/ 16176950 16178729 16178053.4 16175915 16178996 + gene protein_coding_gene FALSE TRUE AT2G38670.1 PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1); ethanolamine-phosphate cytidylyltransferase Encodes a mitochondrial ethanolamine-phosphate cytidylyltransferase, involved in phosphatidylethanolamine (PE) biosynthesis. similar to cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G32260.1); similar to phosphoethanolamine cytidylyltransferase [Hordeum vulgare subsp. vulgare] (GB:AAO43227.1); similar to Os12g0121300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066024.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.288468794625868 2.62294370862953 0.0292888735784257 1 3.35042845938561 17.2355224940916 0.288468794625868 0.125636515637456
AT1G15140_at 8.50483866022001 8.49915671668441 8.3429193415663 8.08499836834293 8.37247976117104 8.38176298362313 8.95291258556506 9.22955340052086 8.74707800843102 8.64061735347167 8.58229151905031 8.60720174250098 8.57693703498954 8.73123087308387 8.82768981257116 8.46974287979989 8.11767299800203 8.46591391898831 8.03151336635054 0.108164536234581 0.105010733486116 0.109240844079871 0.114548939175528 0.114098897426190 0.110729619788153 0.110204588208513 0.107187642517192 0.108922327358411 0.106177634957401 0.107487365477792 0.107611087348222 0.110203289631576 0.108437043577881 0.109720795619139 0.105616372018512 0.113128297615348 0.111245745060218 0.108230070208707 1 1|0 -|/ 5210587 5211819 5211416.889 5210201 5212344 - gene protein_coding_gene FALSE TRUE AT1G15140.1|AT1G15140.2|AT1G15140.3 oxidoreductase NAD-binding domain-containing protein similar to ATLFNR2 (LEAF FNR 2) [Arabidopsis thaliana] (TAIR:AT1G20020.3); similar to Phenol hydroxylase reductase [Medicago truncatula] (GB:ABE92236.1); contains InterPro domain Phenol hydroxylase reductase; (InterPro:IPR001221); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) -0.213404852891443 -2.62281849216010 0.0292947015747988 1 3.35024811771059 17.0562800639406 -0.213404852891443 0.0654805168172127
AT2G32080_at 9.19359687763191 9.45184398078905 9.51927570379846 9.73636290455427 10.0071943705732 9.65059274538822 9.55273395032978 9.51750528071934 9.45798444627579 9.185987964264 9.5515180901153 9.44541389331199 9.73166295513898 9.63686394829386 9.06169112168575 9.8063576316997 9.56811009183387 9.48499624082075 9.45183095917902 0.118136646951447 0.114834662274587 0.119644358188480 0.115395671888371 0.114631964708123 0.118612497036332 0.116269257359120 0.120258408771240 0.129768353911139 0.120851492313980 0.119593103262263 0.113983913749891 0.113983913749891 0.117165322014975 0.127711927575182 0.113983913749891 0.120191804937997 0.119199571755297 0.114106704489105 2 0|2 /|- 13649799 13650434 13650070.444 13649314 13651243 - gene protein_coding_gene FALSE TRUE AT2G32080.1|AT2G32080.2 PUR ALPHA-1 (purin-rich alpha 1); nucleic acid binding similar to the conserved animal nuclear protein PUR alpha which was implicated in the control of gene transcription and DNA replication similar to At2g32080/F22D22.17 [Medicago truncatula] (GB:ABE90927.1); contains InterPro domain PUR-alpha/beta/gamma, DNA/RNA-binding; (InterPro:IPR006628) 0.234997682708633 2.62196512827886 0.0293344513776919 1 3.34901907020708 19.0291854949824 0.234997682708633 0.085171063598126
AT1G32080_at 10.7557788887219 10.7980661910007 10.6375409546828 10.5495034669665 10.9309778816419 10.6881152441917 11.6756038764200 11.6101678629967 11.6861647680162 11.6869587859187 11.7376482531255 11.9202572495728 11.5139250734361 11.7973575525705 11.9698954266272 12.0874799908005 11.2611522580809 11.8858519416091 11.5952590716739 0.0809831451816944 0.0745448738121717 0.08535511070926 0.0772842021556536 0.0754368404423855 0.082842030099103 0.0755409161886497 0.0773109126147409 0.0813796870986489 0.0764696754647148 0.0770310857047061 0.0754289834849785 0.0765392260647867 0.0794771090531197 0.0828291433238996 0.0742161694338151 0.0905854032709716 0.0756946729292648 0.0751346781144041 1 1|0 -|/ 11537565 11538296 11537908.3 11537322 11539780 - gene protein_coding_gene FALSE TRUE AT1G32080.1 membrane protein, putative similar to Os10g0578800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065502.1); similar to LrgB-like family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48034.1); contains InterPro domain Duffy antigen/chemokine receptor; (InterPro:IPR005384); contains InterPro domain LrgB-like protein; (InterPro:IPR007300) -0.196400695777941 -2.62063308517602 0.029396607618301 1 3.3471006130421 22.6696310508765 -0.196400695777941 0.0466936463642491
AT3G42790_at 9.67805642902568 9.69345844321771 9.6402533009993 9.6954878968229 9.94459404831349 9.55260695223894 8.9407265109385 9.0693300469394 9.06747683367667 8.15379159262457 8.77658452881258 8.69695977671626 8.76629839977782 8.69958016474347 8.51737708552814 8.63190066736392 8.23215297384951 8.70651599785266 8.43353411955004 0.164005973099638 0.162962590284978 0.168366252038507 0.170051890610981 0.163262588715688 0.163367116497394 0.165462900104884 0.164243946069481 0.174138022043965 0.182817453505782 0.166065329569675 0.161732241216970 0.161732241216970 0.164370495129168 0.170251703344050 0.165994110825655 0.191756529635228 0.174327930885144 0.173812090501577 3 3 - 14889194 14890011 14889752.091 14888946 14890769 - gene protein_coding_gene FALSE TRUE AT3G42790.1 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G20510.1); similar to PHD1 [Glycine max] (GB:ABI97246.1); similar to PHD4 [Glycine max] (GB:ABI97243.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.219831521388394 2.61769350572741 0.0295342488388562 1 3.34286693703145 18.1168252275358 0.219831521388394 0.0720790510977321
AT1G66140_at 4.87769720856119 5.78807958803502 5.510502672022 5.6307308683658 6.09463669584141 6.04239458527428 5.67359454278903 6.12416865852614 4.16000297622316 4.68539650254413 4.55615191485252 4.93963464678151 5.63875776291637 5.6420173232187 5.29673898752027 5.87906330590394 5.27113265382338 4.07795417480543 5.05828498729452 0.245271095202553 0.236531112011846 0.235393766596841 0.237057883368189 0.239440661242791 0.247991860769338 0.240750863011106 0.25527586111443 0.261858476650845 0.242221448550551 0.24524989841173 0.233876885014079 0.240635773758986 0.249210980110962 0.238026940219017 0.233383630429784 0.249839923921945 0.261657891440833 0.237092283922030 1 1 - 24623735 24624287 24624046.273 24623500 24625667 - gene protein_coding_gene FALSE TRUE AT1G66140.1 ZFP4 (ZINC FINGER PROTEIN 4); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. Identical to Zinc finger protein 4 (ZFP4) [Arabidopsis Thaliana] (GB:Q39263;GB:Q9C8D2); similar to ZFP7 (ZINC FINGER PROTEIN 7), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G24625.1); similar to zinc finger protein (GB:AAA87300.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.365900531719263 2.61763432055258 0.0295370268013326 1 3.34278169688246 10.6163470198844 0.365900531719263 0.177243560585641
ATCG00280_at 11.8290882571896 11.9260443023298 12.8736709840037 11.8653926900659 12.6329219003653 11.4032019496203 12.3549721308503 12.0500890263400 13.1213635947019 13.2641403370585 14.1973007426041 14.4499540878530 14.2355950186854 13.9004381077325 13.6745378329836 13.9877536859621 13.7826630253658 13.7610792739966 12.8490357074375 0.0780280783095169 0.0787258954059092 0.0770420712053343 0.0850423038287765 0.0770420712053343 0.0823440130043915 0.0802109831797974 0.0788441911993977 0.0886870340501744 0.0784557568063044 0.078727447712973 0.0800921583912706 0.0789780486917301 0.0811139807671996 0.0833097980270766 0.0770420712053343 0.0839686716578661 0.0856324287461856 0.0795080733850818 C C + 34547 35034 34814.545 33720 35141 + gene protein_coding_gene FALSE TRUE ATCG00280.1 chloroplast gene encoding a CP43 subunit of the photosystem II reaction center. promoter contains a blue-light responsive element. Identical to Photosystem II 44 kDa reaction center protein precursor (P6 protein) (CP43) (psbC) [Arabidopsis Thaliana] (GB:P56778); similar to photosystem II 44 kDa protein [Typha latifolia] (GB:AAZ04079.1); similar to photosystem II CP43 chlorophyll apoprotein [Gossypium hirsutum] (GB:YP_538931.1); similar to photosystem II CP43 chlorophyll apoprotein [Glycine max] (GB:YP_538759.1); contains InterPro domain Photosystem antenna protein-like; (InterPro:IPR000932); contains InterPro domain Photosynthetic II protein PsbC; (InterPro:IPR005869) 0.537116897000808 2.61759870737623 0.0295386984975476 1 3.34273040579163 25.6553452059109 0.537116897000808 0.280711012523706
AT4G29950_at 7.19905515712855 7.53062710275232 8.37983793612187 8.31552701474163 7.88581454181941 7.63030519448041 7.5926606080983 7.69084516141143 7.12423223922671 7.17850579437899 7.52005424226164 7.17033339382113 7.22898740500661 7.43974653002567 7.01592108487556 7.07341837350256 6.71288267396065 6.9033020030052 7.40590369839717 0.164010893434232 0.159130714205994 0.166447100555435 0.169046000885500 0.167713234552839 0.176506341332119 0.167474058776328 0.160134999318868 0.180977927010255 0.15911548011586 0.164729004478673 0.160722593282045 0.157651400705146 0.166614047516696 0.16645547214834 0.166733214004420 0.173134569381874 0.170602931590679 0.157651400705146 4 4 + 14659709 14660314 14660013.455 14657054 14660579 + gene protein_coding_gene FALSE TRUE AT4G29950.1|AT4G29950.2 microtubule-associated protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19240.1); similar to microtubule-associated protein-related [Arabidopsis thaliana] (TAIR:AT5G57210.1); similar to Os08g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062249.1); similar to putative microtubule-associated protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45848.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195)|similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19240.1); similar to Os08g0518100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062249.1); similar to putative microtubule-associated protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45848.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) 0.223220483541468 2.61729191056591 0.0295531036361716 1 3.34228854860891 14.9627314015567 0.223220483541468 0.0752342254443762
AT1G28380_at 9.58955272774755 9.5251701227253 9.8599373858653 9.73945332068844 9.8833458908708 9.77801238520203 9.18790677408633 9.15507214293604 9.53980975160011 8.9682445277148 8.90901860935156 9.09612715483447 9.09383940195379 9.14136324345696 8.03531396377943 9.18898428693963 9.37324546975873 9.09401455497613 8.70681450473054 0.105962561415091 0.105231371736187 0.106267617225401 0.106522341491574 0.109646846722895 0.107609178186137 0.109709457944119 0.105646706678205 0.116159518725385 0.115690462674125 0.114474146044424 0.108656410299799 0.106905779072292 0.106877126414365 0.119394812064048 0.107946008232288 0.111796437675281 0.109865332898105 0.117227528334393 1 1 + 9965461 9966008 9965670.273 9963579 9966306 + gene protein_coding_gene FALSE TRUE AT1G28380.1 NSL1 (NECROTIC SPOTTED LESIONS 1) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G24290.2); similar to Os05g0557400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056288.1); similar to Membrane attack complex component/perforin/complement C9 [Medicago truncatula] (GB:ABE79564.1); contains InterPro domain Membrane attack complex component/perforin/complement C9; (InterPro:IPR001862) 0.185313605699512 2.61601408001512 0.0296131788099565 1 3.34044818499661 18.6213619755885 0.185313605699512 0.0303881181985720
AT1G25380_at 6.34016880824582 6.21758794522691 6.90724672986868 6.40150749020696 6.66516684807115 6.1597261975148 6.58691451458822 6.06592047709749 5.14882182793894 5.49323418021133 6.16753752475959 6.45684151257361 5.60952779166979 5.70425772702867 6.33409666093898 5.89326394294132 6.13795063627392 5.31926902069947 5.9265268771183 0.226623498182976 0.224646906436084 0.226333175155027 0.23092024930906 0.227558366884649 0.238405609408208 0.236860696526610 0.224646906436084 0.235617996851906 0.225638705122467 0.229498949170340 0.227770912593970 0.228382484829926 0.240013955600744 0.234994541708964 0.229035624807121 0.258510616023493 0.243113786189270 0.238645357195748 1 0|1 /|+ 8905074 8905763 8905389.8 8903457 8905989 + gene protein_coding_gene FALSE TRUE AT1G25380.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT2G47490.1); similar to Mitochondrial FAD carrier protein (ISS) [Ostreococcus tauri] (GB:CAL55805.1); similar to Os01g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043181.1); similar to Os05g0357200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055296.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.33037301024013 2.61548717008033 0.0296379867254876 1 3.33968931758444 12.1558819082859 0.33037301024013 0.154562451777099
AT1G76150_at 9.69802323859514 9.69506341400453 9.86827039661893 9.87158799700736 9.79577978849152 9.54763076695581 9.03231202143239 9.11588370587385 8.60066829152606 8.63918367577687 8.1188459683107 8.37216636683069 8.79753490350165 8.66267815464607 8.40378597531967 8.71964939948936 8.70028365846404 8.76010291139874 8.4478532159161 0.145141011777843 0.149062695754342 0.144457215187068 0.149339776623210 0.151013873330951 0.147332231555897 0.141408654619786 0.158070338439867 0.179443026949357 0.147213586083963 0.157518935747389 0.145718806897349 0.143738055585568 0.140677098748675 0.147914689384379 0.142663567581236 0.156136233219368 0.146744001296592 0.151007974175598 1 1 - 28580132 28581757 28580807.091 28579634 28582594 - gene protein_coding_gene FALSE TRUE AT1G76150.1 maoC-like dehydratase domain-containing protein similar to Os09g0544900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063833.1); similar to hypothetical protein LOC613082 [Xenopus tropicalis] (GB:NP_001027490.1); contains InterPro domain MaoC-like dehydratase; (InterPro:IPR002539); contains InterPro domain Fatty acid synthase; (InterPro:IPR003965) 0.194904582565349 2.61472054679007 0.0296741184763977 1 3.3385852113262 18.1427935719482 0.194904582565349 0.0453198183509584
AT3G01120_at 11.4437336031524 11.6355803101989 11.5953675978720 11.5345845402250 11.7310917048786 11.4445725281817 12.6362999352650 12.5397314675202 12.0091698329652 12.4533554722714 12.3351169219964 12.2915676602166 12.0729942842566 12.3162584852900 12.1689709144387 12.1763871808055 12.0872402193604 12.5110401590935 12.0707812804097 0.073587686330538 0.0680011950145979 0.0692064185094623 0.0691782029836826 0.0700809770654286 0.0720216245330368 0.0724810712183943 0.0735596048424021 0.0802824845869437 0.0685997224944264 0.0712225609165266 0.0685301435225092 0.0681376505369242 0.0691866392205588 0.0711216429175931 0.0681272030064758 0.0772684729865566 0.0683864434216909 0.0687171980408852 3 3|0 -|/ 39251 40252 39721 38766 41939 - gene protein_coding_gene FALSE TRUE AT3G01120.1 MTO1 (METHIONINE OVERACCUMULATION 1) encodes a cystathionine gamma-synthase, which performs the first committed step in methionine biosynthesis. A conserved motif of 13 amino acids in the first exon is required for posttranscriptional autoregulation. This enzyme shares the same substrate as threonine synthase (TS) and its absence transcriptionally affects 8 genes in the genome. Identical to Cystathionine gamma-synthase, chloroplast precursor (EC 2.5.1.48) (CGS) (O-succinylhomoserine (thiol)-lyase) (CGS1) [Arabidopsis Thaliana] (GB:P55217;GB:P92944;GB:P93038;GB:Q42550); similar to cystathionine gamma-synthase, chloroplast, putative / O-succinylhomoserine (Thiol)-lyase, putative [Arabidopsis thaliana] (TAIR:AT1G33320.1); similar to similar to the metB gene product of Escherichia coli; cloned by functional complementation of a metB mutant strain of Escherichia coli LE392 (GB:AAC49574.1); similar to cystathionine gamma-synthase isoform 1 [Solanum tuberosum] (GB:AAF74981.1); similar to cystathionine gamma synthase [Fragaria vesca] (GB:CAA04772.2); contains InterPro domain Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; (InterPro:IPR000277) -0.210127059972351 -2.61441920222462 0.0296883333962983 1 3.33815120939203 24.0314781309439 -0.210127059972351 0.0628544560706947
AT4G16250_at 5.14016704419102 5.72261159373486 5.09756184898299 4.91853452190102 4.90939853289792 5.10695006191655 4.79766956678005 5.02003899566758 4.80790150832573 5.15600170217311 4.48678774818304 5.01105189885494 3.99814676567325 4.62245798359098 4.87855457283065 5.09421934132327 4.27535360202776 4.47437836377001 5.01994012932755 0.220927804754362 0.215548804123108 0.220303770292519 0.214276950377181 0.213314600431966 0.218142796551229 0.220952754732148 0.213740369759985 0.225453527943221 0.213314600431966 0.221211777117136 0.213545461256191 0.216566977656269 0.218293778846036 0.236767287429912 0.213314600431966 0.234296775164669 0.225993365127354 0.216694061207659 4 0|4 /|- 9195632 9196221 9195946.6 9195617 9199501 - gene protein_coding_gene FALSE TRUE AT4G16250.1 PHYD (PHYTOCHROME DEFECTIVE D); G-protein coupled photoreceptor/ signal transducer Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo. Identical to Phytochrome D (PHYD) [Arabidopsis Thaliana] (GB:P42497;GB:O23472); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to phytochrome B1 [Populus balsamifera subsp. trichocarpa] (GB:AAG25725.1); similar to phytochrome B [Cleome hassleriana] (GB:AAW56607.1); similar to Phytochrome B (GB:P34094); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.27575311037291 -2.61315076472662 0.0297482434941906 1 3.33632438625597 9.88898313632927 -0.27575311037291 0.117341680536048
AT2G37460_at 9.31178863374713 9.43264157663516 10.3401924036265 10.3567292221635 10.1582799838620 10.0955868570039 10.7350191171062 10.6334246844432 9.79505942970568 10.0388068669423 10.140066750988 9.75044545268512 10.2216008632565 9.98090736248378 9.43104295001711 10.2363240965348 10.4691651346896 9.90298329005618 9.73663142275413 0.0875714746131478 0.0875672315720162 0.0888450281736532 0.0861772294314261 0.0871012228431615 0.0932387707310613 0.084265569720055 0.0841875679827456 0.103764318501799 0.0848949681612488 0.0873890936002216 0.0879545326185152 0.0893449860014966 0.0901754458807928 0.0923455094560086 0.0880983357313031 0.0854932994432955 0.0936598789393595 0.0854514696489686 2 2|0 -|/ 15734060 15734551 15734274.333 15733527 15736176 - gene protein_coding_gene FALSE TRUE AT2G37460.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G37450.2); similar to Peptidase M14, carboxypeptidase A [Medicago truncatula] (GB:ABE82104.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.184606514067950 2.61236603116306 0.0297853689898148 1 3.33519420406399 20.0696575901849 0.184606514067950 0.0295365110554762
AT2G33770_at 10.0161805951749 10.1902450611127 10.1668334588279 10.0516660328897 10.4013592689512 10.0942865390306 10.0524784710449 9.98287600878573 9.16054186699165 9.9729013493536 10.0099285397565 9.73801684598506 10.0860542145665 9.95700645184197 9.39598358758723 10.2022557568437 10.4237337364017 10.0398128620617 9.89101913831848 0.136377400471523 0.133590591424730 0.133590591424730 0.133590591424730 0.133590591424730 0.133590591424730 0.139247279842364 0.139259485769971 0.152976927152529 0.142891237771532 0.133590591424730 0.133590591424730 0.136216511784958 0.144528753823333 0.141804573510566 0.133653171610452 0.133590591424730 0.144808739268248 0.144224881213741 2 2 - 14285191 14285733 14285449.333 14284634 14290116 - gene protein_coding_gene FALSE TRUE AT2G33770.1 PHO2/UBC24 (PHOSPHATE 2); ubiquitin-protein ligase Encodes a ubiquitin-conjugating E2 enzyme. UBC24 mRNA accumulation is suppressed by miR399f, miR399b and miR399c. Involved in phosphate starvation response. similar to UBC23 (ubiquitin-conjugating enzyme 22), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G16920.1); similar to Os05g0557700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056291.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58719.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.212434752693972 2.61222321983234 0.0297921304038799 1 3.33498852583188 19.9477005716114 0.212434752693972 0.0653725619545722
AT1G21790_at 5.50641329000094 5.92346214298926 5.48603156884999 5.63603175608684 6.94179698598302 6.51620660176333 7.42439364707902 7.12694774857986 4.64641800018998 5.29034977349415 5.62471686933143 5.6070184809106 5.50549474686221 5.91615195304308 5.57664485772469 6.79112460752289 5.8874754736377 5.42259508672589 4.7271424722736 0.232922780771097 0.227741556238257 0.233651337589922 0.233642945680655 0.232854357897784 0.230963356966424 0.234573435471259 0.232098316019173 0.243960816578298 0.236080787295893 0.231280199602142 0.240339702328393 0.233044618412746 0.228359905924238 0.232014147661058 0.231522127292212 0.227741556238257 0.239706419272349 0.227925927869911 1 1 + 7654977 7655581 7655244.545 7654173 7655872 + gene protein_coding_gene FALSE TRUE AT1G21790.1 similar to Os01g0869600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044928.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81707.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634) 0.276572599246211 2.61046615799569 0.0298754462182599 1 3.33245799586105 11.6598468883944 0.276572599246211 0.118138303436038
AT1G02130_at 8.08624938610524 8.11583119915721 8.27772497800979 8.45381893304464 8.62249532523544 8.28525694349838 8.222663670537 8.4231291800438 8.05426163883048 7.94241012605582 8.25520669479141 8.08666628266269 8.45733615457998 8.44352051978272 8.2201038010453 8.27575239244544 8.0833358143464 8.0306696765708 7.96035288346696 0.122133403811318 0.123498714980846 0.124249804896897 0.120331078588868 0.127918326841756 0.136454253295894 0.123360963638416 0.1289399480153 0.135180487827252 0.126441248214889 0.121664951290421 0.123202022407770 0.121517048932868 0.127224965823448 0.126140173309827 0.120942870534082 0.120377013034902 0.12226800066625 0.133461082009224 1 1|0 -|/ 400356 401631 400946.1 400035 401882 - gene protein_coding_gene FALSE TRUE AT1G02130.1 ATRAB1B (Arabidopsis thaliana responsive to abscisic acid 1B); GTP binding Belongs to the Rab1 GTPase subfamily. This small GTP-binding protein is required in ER to Golgi transportation. Identical to Ras-related protein ARA-5 (ARA-5) [Arabidopsis Thaliana] (GB:P28188); similar to AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b), GTP binding [Arabidopsis thaliana] (TAIR:AT5G47200.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02118.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.221877360114962 2.60974575463793 0.0299096743858677 1 3.33142047105634 16.4195206018602 0.221877360114962 0.0745944517970704
AT3G13410_at 11.0166944673393 11.1496729274715 11.1621242227281 11.2319984548028 11.3698047922828 11.1700951777284 11.3555264325599 11.3312155409755 11.0270374632373 11.0040157102427 11.3526457629486 11.3323688929988 11.0577709863342 11.2977737818773 11.1119255565613 11.1332204075646 11.2765092271974 11.2753493404586 10.5600413647407 0.0990791899412722 0.0919790157908714 0.0972852835696031 0.094897518394986 0.0929927297189162 0.0968362232182125 0.09833201090765 0.0919790157908714 0.0985960139136114 0.0939658724907095 0.0919790157908714 0.0928741016401144 0.0974150017205 0.0919790157908714 0.0964121094786987 0.0919790157908714 0.0970721326753106 0.0942620586864853 0.0986323605596003 3 3|0 -|/ 4362157 4363112 4362633 4361864 4364269 - gene protein_coding_gene FALSE TRUE AT3G13410.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG21861.1); similar to Os12g0123900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066036.1); similar to Os11g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065630.1) 0.193112817442331 2.60930641931451 0.0299305678364778 1 3.33078774159837 22.2700883389358 0.193112817442331 0.0434503797082044
AT2G30170_at 8.97228527347288 9.05109266643793 8.88804722250987 8.73422289989569 9.23291437465746 8.5699832231038 9.83274447762533 9.63525124611477 8.96215671122286 9.7198885917743 9.66541847363002 9.55100690864917 9.41014622232028 9.44297141591725 9.52193165080682 9.84854558351906 9.03712824238931 9.0477647427828 9.79238461356353 0.125251592498663 0.122842341156890 0.125465488414061 0.129945137455503 0.126580628066427 0.136226508701363 0.126892729990878 0.124406670279791 0.135662618404848 0.124721963414732 0.12445053762867 0.123625066134332 0.127509126909678 0.127801867876759 0.122842341156890 0.123383552976453 0.141141587163704 0.135213914202493 0.128642904224782 2 2 - 12886893 12887943 12887549.455 12886752 12888575 - gene protein_coding_gene FALSE TRUE AT2G30170.1|AT2G30170.2 catalytic similar to 5-azacytidine resistance protein -related [Arabidopsis thaliana] (TAIR:AT5G66720.2); similar to Os01g0164600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042103.1); similar to putative senescence-associated protein [Pisum sativum] (GB:BAB33413.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.283706984861372 -2.60858541687432 0.0299648886156834 1 3.32974935802354 18.5806130699049 -0.283706984861372 0.123386132555335
AT1G78420_at 8.03308897052035 7.9210256912416 8.39013613164244 8.35100287804218 8.61048759350698 8.7742943946546 7.50677063438098 7.72721588423719 6.96753569422255 7.31132936150784 6.54948997638891 6.46843651733471 6.75617451732607 6.95379992733998 6.69863853150562 7.0020640710333 7.04578445422974 6.52408728893442 6.97633342759004 0.202723681412126 0.208626700263459 0.209082042876796 0.209810080466893 0.203648654266377 0.212972803489802 0.202723681412126 0.203423592751722 0.207480249766881 0.211760212879307 0.207946082623101 0.203931204275545 0.212435591413863 0.211908957711301 0.202723681412126 0.202723681412126 0.212658556830975 0.206528030666122 0.205877192892411 1 0|1 /|+ 29511706 29512120 29511885.1 29509426 29512379 + gene protein_coding_gene FALSE TRUE AT1G78420.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G17145.1); similar to hypothetical protein DDBDRAFT_0205514 [Dictyostelium discoideum AX4] (GB:XP_642422.1); similar to Os02g0244100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046414.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.199599101885650 2.60852583515665 0.0299677265788193 1 3.32966354889201 15.0816905580875 0.199599101885650 0.0517772978889096
AT1G69620_at 11.3411460664450 11.505177145925 10.9822928068033 11.0373268038494 11.1938873316761 11.1457418623115 11.0953013791590 11.3841224387011 11.4932558184280 11.3069883372779 11.3003799894922 11.4203263697719 11.2758954021147 11.387055729412 11.4098770650090 11.0304438827070 10.7632489916609 11.0666516131907 11.3300766827447 0.077015812696092 0.0725835145988834 0.0742405001667693 0.079880368597871 0.0719005444035308 0.0765585672952399 0.0715169501556302 0.0731875010393243 0.0758039091097806 0.0744365173715422 0.0737581719234328 0.071122642766845 0.0725041236939565 0.0725920033940822 0.0748534447290214 0.0721666773720152 0.084572865252758 0.072871968857673 0.0727978645668455 1 1|0 +|/ 26193581 26194659 26194120.375 26193499 26194986 + gene protein_coding_gene FALSE TRUE AT1G69620.1 RPL34 (RIBOSOMAL PROTEIN L34); structural constituent of ribosome putative 60S ribosomal protein L34 Identical to 60S ribosomal protein L34-2 (RPL34B) [Arabidopsis Thaliana] (GB:Q9FE65); similar to 60S ribosomal protein L34 (RPL34A) [Arabidopsis thaliana] (TAIR:AT1G26880.1); similar to 60S ribosomal protein L34 (GB:P41098); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.205831644397255 -2.60818449361957 0.0299839904255004 1 3.3291719517839 22.5023787259771 -0.205831644397255 0.0588565314052536
AT4G19140_at 8.11782703903388 8.4186227854256 8.24791918518054 8.34167952440263 8.86473438988305 8.5312396608936 8.38399135326475 8.15674477587927 7.1527384830305 7.35353240931045 7.73979354779412 7.99130369183055 7.59627952841911 7.79777516792946 7.20605585220143 7.57520951459995 7.3881835173056 7.36986845625145 7.49720034360896 0.186763612750997 0.183374151700914 0.183374151700914 0.186835582210969 0.189166559279467 0.183374151700914 0.183374151700914 0.188783036650801 0.192724109290264 0.185488052479593 0.183374151700914 0.186112038905639 0.18391505967113 0.187435397852643 0.187574444603938 0.183938474856072 0.194873331903066 0.192593100062437 0.192031437914004 4 4 + 10470345 10471230 10470826.364 10469675 10471401 + gene protein_coding_gene FALSE TRUE AT4G19140.1 similar to Os04g0600400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053760.1) 0.237832474623618 2.60791233107508 0.0299969645279219 1 3.32877998608786 15.8416193750078 0.237832474623618 0.088601423017795
AT3G02560_at 10.1387975908458 10.3169500496026 9.61499149086002 9.74007410395617 9.94383432037128 9.97655255341253 9.8786052788541 9.99086708562307 9.67546162874708 9.77821899497755 9.84213111473317 10.0774305052024 9.7162321430065 9.60719317682973 9.98784563694121 9.44218109137006 9.35362922350998 9.40372150820213 9.94999234451155 0.113912077444633 0.111593146857241 0.129912947500519 0.117551457460400 0.112418913755719 0.120953209852285 0.111887580418511 0.113808295277069 0.125308098726380 0.117677855522106 0.117206582071387 0.111593146857241 0.115908503017939 0.114159175448527 0.123516687481957 0.111593146857241 0.122755070450078 0.123795440538092 0.117703411240341 3 3 + 542671 543144 542834.818 541722 543392 + gene protein_coding_gene FALSE TRUE AT3G02560.1|AT3G02560.2 40S ribosomal protein S7 (RPS7B) Identical to 40S ribosomal protein S7-2 (RPS7B) [Arabidopsis Thaliana] (GB:Q9M885); similar to 40S ribosomal protein S7 (RPS7C) [Arabidopsis thaliana] (TAIR:AT5G16130.1); similar to 40S ribosomal protein S7 (GB:Q9XH45); contains InterPro domain Ribosomal protein S7E; (InterPro:IPR000554) -0.192435328426194 -2.60689285912832 0.0300456138264764 1 3.32731175655779 19.6900939955506 -0.192435328426194 0.0427613678526768
AT3G51600_at 12.8607641465689 12.9253764042854 12.8288644259084 12.8829302827311 13.1623631780265 13.2309247114254 13.0177069217246 13.2268235980968 12.8792882844833 13.100811523672 13.4949559426909 13.4266386182203 13.2859606633037 13.0839924370890 13.3741983070027 12.7552641006875 13.2727423309374 13.2674556692023 12.6649824655992 0.0621002956194628 0.0630361463505798 0.0643126960458684 0.0632127099314926 0.0631323106689939 0.0631255796969494 0.0646317325986475 0.0668718098736024 0.0720325761751945 0.0633777408784696 0.0620425302505055 0.0618861220418402 0.0637761782532642 0.0639991027506565 0.0622780833240727 0.0618861220418402 0.0658956072059026 0.0673234186912752 0.062398249715275 3 3|0 -|/ 19149821 19150045 19149931.9 19149373 19150231 - gene protein_coding_gene FALSE TRUE AT3G51600.1 LTP5 (LIPID TRANSFER PROTEIN 5); lipid transporter lipid transfer protein 5 Identical to Nonspecific lipid-transfer protein 5 precursor (LTP 5) (LTP5) [Arabidopsis Thaliana] (GB:Q9XFS7); similar to LP1 (nonspecific lipid transfer protein 1) [Arabidopsis thaliana] (TAIR:AT2G38540.1); similar to lipid transfer protein [Brassica oleracea] (GB:AAC63372.1); contains InterPro domain Plant lipid transfer protein/Par allergen; (InterPro:IPR000528); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.191029899622066 2.60678371334764 0.0300508270147249 1 3.32715456663233 26.0803917585425 0.191029899622066 0.0407793791902307
AT3G07310_at 10.7838972837707 10.7881159881127 10.6824621638519 10.7774386760659 11.0132146480313 10.9474259474657 11.3309606630795 11.4095323084468 10.7391077796674 11.0590890272282 10.7454098991304 10.6520296776282 11.0561457469835 10.8768181208940 10.5849973119612 10.8809542090996 10.9376598744059 10.6818349403667 11.0284991823073 0.0805378461497207 0.078576541649511 0.0826245495016326 0.0808134529051286 0.0775838868666512 0.0801603714527695 0.0776788357229893 0.0778429614478728 0.0837606372755469 0.0793852554957337 0.0789131039102428 0.0779985783261479 0.0790564312536996 0.079597667990286 0.0801690363297888 0.0786173663914887 0.0818676857763132 0.0795038530642374 0.0795236531586384 3 3 - 2328197 2328613 2328430.455 2327824 2329807 - gene protein_coding_gene FALSE TRUE AT3G07310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48590.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93505.2); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) -0.181620987920489 -2.60605737765099 0.0300855427539196 1 3.32610851181103 21.8387375693329 -0.181620987920489 0.0241905363640912
AT2G44520_at 6.18496519647668 6.48486501112641 6.50340873241671 6.78675284064497 6.63594872979737 5.81588062658333 6.36908712554807 6.68326374897784 4.69266781832692 4.32939932001382 4.97270469564191 5.53343011685834 4.9938584696086 5.53393007637682 4.80696235235464 5.67672531306957 5.17109710373616 5.09547770020736 4.56471832737115 0.251836431528716 0.254988070927635 0.254269743323721 0.245583378287616 0.247159940120420 0.265036559416484 0.262240331892179 0.246838361052633 0.260201026701632 0.259402021815345 0.249608918220663 0.251254066866686 0.249762186861041 0.256320551298129 0.245583378287616 0.245583378287616 0.287819809485703 0.263056701996069 0.246471585947532 2 2 + 18387947 18388719 18388324.545 18386640 18389018 + gene protein_coding_gene FALSE TRUE AT2G44520.1 COX10 (CYTOCHROME C OXIDASE 10); prenyltransferase similar to Os01g0527700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043230.1); similar to Heme A farnesyltransferase (ISS) [Ostreococcus tauri] (GB:CAL51914.1); contains InterPro domain UbiA prenyltransferase; (InterPro:IPR000537); contains InterPro domain Protoheme IX farnesyltransferase; (InterPro:IPR006369) 0.349523600869694 2.60481197154343 0.0301451625469188 1 3.32431490871245 11.3089973599726 0.349523600869694 0.167911403286545
AT3G19770_at 6.00905966886139 6.22681019323819 5.56428263204293 6.43014357264196 5.92248534727854 6.02910621328067 5.27577630373815 5.7802924221554 4.86578482953803 4.59623273898785 5.79283989032993 5.23881298284916 4.89728543967537 5.75953455974348 5.05084688134187 5.57712143247476 5.39016451402354 5.5390153355037 5.0501093255642 0.197647530706373 0.191879275680741 0.203317475552877 0.194476933337998 0.200236596063286 0.201941076665922 0.198182438121646 0.195121100555734 0.197088118267450 0.203209008428687 0.191658876191918 0.192622773160146 0.200474632227143 0.202378158213350 0.194040528083192 0.195710472283659 0.207969324855967 0.208118310414038 0.194525416137278 3 3 + 6868568 6869092 6868808.455 6866812 6869485 + gene protein_coding_gene FALSE TRUE AT3G19770.1|AT3G19770.2 vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein similar to vacuolar sorting protein 9 domain-containing protein / VPS9 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G09320.1); similar to Vacuolar sorting protein 9 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95105.1); contains InterPro domain Vacuolar sorting protein 9; (InterPro:IPR003123) 0.365923396221055 2.60448839931273 0.0301606721256147 1 3.32384890948452 11.0262836745827 0.365923396221055 0.1784255672784
AT3G12180_at 5.76744649649055 5.99336293266987 6.22421746483183 6.34300072996716 6.75739396548505 5.96705319005736 6.53500725393875 6.51187716294004 4.89383111930244 4.49990655915434 4.61784583356782 5.49156475970157 5.58683663971169 5.42423981649171 4.70166615264114 5.56475733411899 4.51116674329775 4.93673629101813 4.40572516937759 0.232480161284828 0.233069168952725 0.241777577534048 0.228660607776094 0.234561281353544 0.265914722978063 0.226075308281177 0.223122276403953 0.243025217083151 0.235086990733950 0.223122276403953 0.228472921386793 0.229403921214490 0.230699426545257 0.229016176016397 0.228345352186947 0.235358812031974 0.240998906354030 0.231733345376213 3 3|0 +|/ 3883490 3884525 3884165.778 3883369 3884812 + gene protein_coding_gene FALSE TRUE AT3G12180.1 cornichon family protein similar to cornichon family protein [Arabidopsis thaliana] (TAIR:AT1G12390.1); similar to Cornichon [Medicago truncatula] (GB:ABE94656.1); contains InterPro domain Cornichon; (InterPro:IPR003377) 0.312761811558011 2.60420089092478 0.0301744598702532 1 3.32343484887778 11.1145062223459 0.312761811558011 0.143783458879581
AT4G16330_at 9.02981566411897 9.2931242334227 9.2858455139914 9.30804921114975 9.74470766109812 9.55887019269113 8.68869573545077 8.77304989321681 8.58632614075269 8.77556255053702 8.41976962885872 8.2240603398519 8.70555736932269 8.57356209155739 8.35166078149339 8.6058461051779 8.66476190683753 8.66055542969353 8.5727532229667 0.179511196416450 0.173030072671989 0.184764374160136 0.170632042919263 0.176833595137337 0.182630231194196 0.180220824971262 0.171084234363591 0.201362911920434 0.173713971286850 0.175363310987303 0.173583067395601 0.175509175651914 0.184861191197046 0.181906800768869 0.169566539327401 0.170106571576031 0.177815720359837 0.169459264800874 4 4 - 9226321 9226844 9226569.636 9226181 9227508 - gene protein_coding_gene FALSE TRUE AT4G16330.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT2G38240.1); similar to naringenin 3-dioxygenase like protein [Brassica napus] (GB:CAC14568.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.204518915846977 2.60408853867607 0.0301798495688298 1 3.32327304281367 17.7955709354848 0.204518915846977 0.0577794240399041
AT1G01080_at 6.59727394321111 6.64551417805144 5.43588618272088 4.99366646639679 6.01068387889784 5.86415409054801 6.12262777474563 6.53283316253635 6.45256592669444 6.71401797156292 7.06618707328558 7.78056753385439 6.73950595608273 6.51363008804983 7.71933545725182 7.63250494098105 5.92589657955168 6.76006855074089 6.7601805771393 0.228934361844207 0.215141944922482 0.227080911526592 0.219008622997476 0.215994847223457 0.241091936322614 0.220632957881671 0.225200015155932 0.232473639369119 0.225160801990408 0.217696944723162 0.219249600593036 0.218259313145890 0.238416784548881 0.228919779130141 0.219569854005736 0.229968221779345 0.219188700784841 0.222782814378540 1 1 - 45529 46458 46055.636 45296 47019 - gene protein_coding_gene FALSE TRUE AT1G01080.1|AT1G01080.2 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative|RNA binding similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to RNA-binding re (GB:ABD32708.1); similar to Os08g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060859.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to 33 kDa ribonucleoprotein, chloroplast precursor (GB:P19684); similar to Os08g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060859.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.261753706326364 -2.60368991670458 0.0301989799159093 1 3.32269896101233 12.855063383442 -0.261753706326364 0.107743010495826
AT3G26900_at 8.85051589917548 9.02016109373115 8.95885828312282 8.91701328017729 9.08748465718194 8.8175604810395 9.3645869773134 9.33386348658258 9.60714355582825 9.4184561473751 9.28791729327423 9.2765095463921 9.34803955018773 9.27694696664232 9.35897854119167 9.394959927452 9.26311465617383 9.3943615435479 9.5745110528840 0.1129560211956 0.107260119333264 0.109902762030893 0.116101667680657 0.116558800390030 0.111327997733551 0.113629757625217 0.111768995535035 0.114719849758848 0.116696782843921 0.109069807333126 0.107292390504434 0.108296133125215 0.11586138639623 0.112335407159072 0.106374570177316 0.11729167420009 0.109004540357027 0.110830526618366 3 3|0 -|/ 9913554 9915069 9914357 9913449 9915715 - gene protein_coding_gene FALSE TRUE AT3G26900.1 shikimate kinase family protein similar to ATP binding / shikimate kinase [Arabidopsis thaliana] (TAIR:AT2G21940.5); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45509.1); similar to Os01g0102600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041750.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) -0.202659718870827 -2.60199014030060 0.0302806923610982 1 3.32025101225409 18.4729923973589 -0.202659718870827 0.0558978592232806
AT4G39220_at 7.73175528979361 8.02327062529394 7.47321224278296 7.86533836202473 7.69492300335425 7.4287206959866 7.18284221972265 7.00664034840728 6.73052206834025 6.68340724090282 6.99949206768526 7.36249140586862 6.85133992912444 7.25491285088674 7.35883041485043 6.56124253508258 6.40055776049204 6.93443294074239 6.35408100388258 0.21855520480032 0.207646016602104 0.216443786416355 0.196646591052201 0.191820811069730 0.242237514005782 0.192403909173753 0.200363745956589 0.223034713559687 0.202344335968155 0.192124588700847 0.196322834647246 0.196554321507813 0.199904299679249 0.207477218488230 0.191820811069730 0.211793209898588 0.198530040683652 0.19981603325185 4 4|0 +|/ 18264307 18265165 18264724.3 18263611 18265765 + gene protein_coding_gene FALSE TRUE AT4G39220.1 ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) Key player of retrieval of ER membrane proteins Identical to Protein RER1A (AtRER1A) (RER1A) [Arabidopsis Thaliana] (GB:O48670); similar to ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) [Arabidopsis thaliana] (TAIR:AT2G21600.1); similar to Retrieval of early ER protein Rer1 [Medicago truncatula] (GB:ABE85945.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.252748586141222 2.60182102731430 0.0302888342941461 1 3.32000746365702 14.3282124779875 0.252748586141222 0.101004470809842
AT1G16080_at 9.02407980973834 9.22607798355084 9.19280981301605 9.33836047000275 9.38730325419248 9.2072996645773 10.2428858119001 10.3600895556938 10.2630039160306 10.2538614137651 10.310864116456 10.2309676742987 10.2135952970581 10.2580220899645 10.3101681540617 10.7128533646598 10.1881562106330 10.3260041737972 10.3636009129681 0.113422821615634 0.108044227152683 0.115190805130416 0.110983773658357 0.109666909270002 0.112024942403413 0.112813363768128 0.105260908481310 0.107990502920325 0.109823945174672 0.103270253259221 0.103080798589752 0.103080798589752 0.107693691233816 0.108438898853591 0.108609499265672 0.107701218947174 0.105028588700262 0.107218433641960 1 1|0 +|/ 5514991 5515713 5515312.8 5514311 5516021 + gene protein_coding_gene FALSE TRUE AT1G16080.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54676.1); similar to Os08g0266300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061403.1) -0.203249926122711 -2.59801039078976 0.0304728868971394 1 3.31451961700029 19.803522111686 -0.203249926122711 0.0569048011845186
AT1G09150_at 8.3776785709709 8.31963707063773 8.0312312954271 8.18953805048974 8.7580827177772 8.06777174642672 8.14610246353255 8.12107166554527 7.24978540443558 7.52483699929719 7.87529495533055 8.04501563993839 7.79766711407336 8.03419462589837 8.2698145355772 8.14521417956513 8.10085726305457 7.67690668594629 7.57399334762162 0.172053430328443 0.168996424648085 0.170013885840328 0.170171957840213 0.168269066025445 0.177806555667475 0.170914018319107 0.181263329937654 0.193736896678491 0.173495700791540 0.172313017062483 0.168269066025445 0.172262340389157 0.192272573086102 0.175857060781613 0.173894434054520 0.182916491697586 0.180995715520149 0.177564580834892 1 1|0 +|/ 2947252 2948750 2947900.333 2946231 2949161 + gene protein_coding_gene FALSE TRUE AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein similar to eukaryotic translation initiation factor SUI1 family protein [Arabidopsis thaliana] (TAIR:AT1G71350.1); similar to MLL [Hordeum vulgare subsp. vulgare] (GB:AAV80392.1); similar to Os01g0314300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042871.1); contains InterPro domain Uncharacterized domain 2; (InterPro:IPR004521); contains InterPro domain PUA; (InterPro:IPR002478) 0.282057775498387 2.5977604671551 0.03048499768734 1 3.31415969596037 15.9727188019548 0.282057775498387 0.123049730148911
AT1G23220_at 8.93395037624203 8.98380221901683 8.97290911154618 9.00740869648221 9.25366181704942 9.27738434921003 9.18853565676102 9.21666706061896 8.7083782451242 8.82669228655914 9.36638543104438 9.3705662144426 8.90499600173273 9.18094873053783 9.18631966368193 9.14044284029411 8.71955557250405 8.97761953540094 8.86104967689391 0.115384784614069 0.10666063490639 0.107661145955953 0.109799872104962 0.106678171620582 0.106972439045754 0.108872135657603 0.109366927991848 0.119938763587228 0.106890343003090 0.109866130310364 0.10666063490639 0.109812692169270 0.10666063490639 0.112327839950391 0.109852105464380 0.119707844666540 0.116346398114914 0.10666063490639 1 1|0 +|/ 8242700 8244091 8243264.6 8242435 8244307 + gene protein_coding_gene FALSE TRUE AT1G23220.1 dynein light chain type 1 family protein similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT5G20110.1); similar to B0812A04.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67632.1); similar to Os02g0580400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047235.1); similar to Os04g0462600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053004.1); contains InterPro domain Dynein light chain, type 1; (InterPro:IPR001372) 0.177124838962329 2.59748324735071 0.0304984369029259 1 3.31376046561749 18.0565704033145 0.177124838962329 0.0122729337879583
AT4G11270_at 6.75970538357131 6.74817484535273 6.78578269966176 6.69537249378703 6.5308998908226 6.23964221795649 6.57398833129004 6.52475550178837 6.02326831239682 6.13082026765098 6.49949222577169 6.98986406337448 6.84872362775222 6.61484480334511 6.37947353762982 6.57653104666987 6.24444874071588 6.56789136583884 6.14947531223712 0.194521189405556 0.197079515023577 0.210115593585338 0.191960262827893 0.193149326810521 0.218749083164262 0.198057484720233 0.194290307172153 0.200681421785273 0.188290131305100 0.190165316668409 0.197584933766866 0.190572590608071 0.198000508747425 0.193953815470069 0.188290131305100 0.203266955274544 0.200377035978137 0.188290131305100 4 4|0 +|/ 6858627 6859456 6859044.4 6854360 6859660 + gene protein_coding_gene FALSE TRUE AT4G11270.1 transducin family protein / WD-40 repeat family protein similar to hypothetical protein DDBDRAFT_0168971 [Dictyostelium discoideum AX4] (GB:XP_644959.1); similar to Os06g0331300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057541.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.200119511174310 2.5962863873723 0.0305565279270431 1 3.31203684819930 12.9529634907699 0.200119511174310 0.0534965296439075
AT1G21630_at 7.56413429874761 7.72681138826401 7.65553904444687 7.82163867195201 8.1190107985291 8.01150481917038 7.66608773645745 7.89481455715366 7.9767926169564 7.54667994857842 8.03720404662815 7.72447615977127 7.79955304671316 7.94352393968208 7.96522627251093 8.0604568095321 7.85613756470215 7.88637199524525 7.53874011103321 0.133836321502595 0.135756980045304 0.138749583240130 0.138726710104198 0.137102684940751 0.135851441248607 0.139382777522817 0.130916192427849 0.153478711507245 0.144517959167542 0.140476908893379 0.137277497122225 0.141173591803416 0.135298416230499 0.137030838594503 0.132016358167598 0.147892653655573 0.133568644364168 0.142949686704233 1 1 + 7587210 7587749 7587483.909 7581141 7588140 + gene protein_coding_gene FALSE TRUE AT1G21630.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G20760.1); similar to EPS15 homology (EH) [Medicago truncatula] (GB:ABE79536.1); similar to Os03g0130500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048855.1); similar to Os06g0728600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058644.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain EPS15 homology (EH); (InterPro:IPR000261) 0.205337921097183 2.59523342717473 0.0306077273516331 1 3.31052047281315 15.6057041417755 0.205337921097183 0.0594276911347968
AT4G09620_at 7.77888868746266 7.97109496197375 7.76082547675977 7.74889635449201 8.02528321207445 7.36599723187114 8.73867144785443 8.69523878521659 7.45922120989491 8.35637334774826 7.99672949691866 8.14527159971914 8.12113610827571 8.1749918963621 7.90521460304094 8.5409331294652 7.79072615003904 7.40293981280097 8.15909973414774 0.191163792198720 0.186486644235413 0.198475558521330 0.192599258058289 0.195059484256904 0.202612300720559 0.205143137348323 0.195277968134179 0.224651332514712 0.191337073896955 0.190574117262489 0.191335656314257 0.191961620293659 0.199079000028182 0.198789035362883 0.186129253229070 0.200241262271752 0.199922388328462 0.189526485367672 4 4|0 -|/ 6077123 6077780 6077419.4 6076989 6079099 - gene protein_coding_gene FALSE TRUE AT4G09620.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57113.1); similar to Os03g0838900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051838.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.276272408090049 -2.59513475530156 0.0306125296541231 1 3.31037837522777 16.0112658264671 -0.276272408090049 0.11909756692315
AT4G27900_at 7.70554452573406 7.88209098944056 6.16117911762023 6.44442092354683 7.02075495121886 7.07900248493362 4.41772445647585 4.90764387438159 6.34439240951817 6.2119967657468 4.90587692663805 5.39005860299882 4.6904714887586 5.08159933378959 6.03695499147473 6.49989237193756 4.37072481822352 4.60199854125181 5.90812703676206 0.222206275780642 0.220726892844648 0.22077220363148 0.225933263244241 0.218279056281174 0.221415131136056 0.219174107563896 0.223580243917311 0.222713363098475 0.226938480983006 0.218412152450903 0.218085713202569 0.227100578523783 0.225588842897869 0.227026323382733 0.218085713202569 0.238118405937628 0.225234897186888 0.227167984002917 4 4 + 13891855 13892714 13892132.455 13890650 13893079 + gene protein_coding_gene FALSE TRUE AT4G27900.1|AT4G27900.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53420.1); similar to CCT [Medicago truncatula] (GB:ABE82748.1); contains InterPro domain CCT; (InterPro:IPR010402) -0.254776597568193 -2.59508886733085 0.0306147632550735 1 3.31031229188641 12.1283131012822 -0.254776597568193 0.103081385164741
AT1G11650_at 11.1817755124098 11.1630618816425 11.3735343489444 11.3960898296927 11.4738527486037 11.3104170288535 11.1999143641844 11.2076548709396 11.2432885921026 11.1793113748560 11.4600166871737 11.3475923812721 11.3727284781411 11.3786591291452 11.4134931813624 11.3707621310936 11.2841813293208 11.3226925241973 11.1875186339604 0.0625373630569359 0.0638357230108276 0.0691169633601361 0.0653498303011474 0.0645556160342358 0.0677522646330748 0.0655246767051395 0.0664997919834633 0.0714123627292176 0.0646344638830335 0.0625373630569359 0.0625373630569359 0.0641019439175035 0.0664571628374052 0.0673063124448604 0.0626807414036553 0.0700110769992643 0.0656253713149751 0.0640772542976656 1 1 + 3915786 3917868 3917115.273 3914774 3918176 + gene protein_coding_gene FALSE TRUE AT1G11650.1|AT1G11650.2 ATRBP45B; RNA binding similar to RNA-binding protein 45 (RBP45), putative [Arabidopsis thaliana] (TAIR:AT4G27000.1); similar to putative RNA Binding Protein 45 [Oryza sativa (japonica cultivar-group)] (GB:BAD05744.1); similar to Os08g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061165.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA-binding protein 45 (RBP45), putative [Arabidopsis thaliana] (TAIR:AT4G27000.1); similar to putative RNA Binding Protein 45 [Oryza sativa (japonica cultivar-group)] (GB:BAD05744.1); similar to Os08g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061165.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.182882347484884 2.59353112597999 0.0306906845200391 1 3.30806899673691 22.574356871752 0.182882347484884 0.0287656726153302
AT1G67890_at 7.45178331969614 7.09569714165606 7.18803807868997 6.81738238070656 7.3890104050715 7.18624973258354 7.83754305207919 7.29937752494636 7.314634532113 7.40614168703433 7.14601983313428 7.0167752790645 6.84023690290879 7.52704998734338 6.94477176572385 7.42229779852065 7.05864700264533 6.67489410805409 7.46635992744224 0.193190277481873 0.196090806095762 0.200292294608482 0.194955392545898 0.200961179037716 0.201626089441046 0.195400046907083 0.205556310074135 0.219066630022869 0.195236721456895 0.193380020967845 0.196731413446749 0.201842192173693 0.198977085218762 0.203631616587406 0.190914946211234 0.217103006933557 0.195635842415601 0.190914946211234 1 1|0 +|/ 25463637 25466059 25464917.111 25460842 25466455 + gene protein_coding_gene FALSE TRUE AT1G67890.1|AT1G67890.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06640.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49470.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06620.1); similar to Os11g0678000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068453.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22048.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98953.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06630.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49470.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06620.1); similar to Os11g0678000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068453.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22048.1); similar to protein kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98953.2); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767) -0.296402787260187 -2.59333944913971 0.0307000396508288 1 3.30779296538717 14.5204095211974 -0.296402787260187 0.133478559566128
AT2G38780_at 6.43246689142742 6.35613569541526 6.60055984684147 6.12614679114308 6.90785148837276 6.06056397011804 7.81747289615865 7.41069935055355 7.72036633724968 7.73401595311031 7.84159188136158 7.82570217814898 7.43509083948258 7.7598946382744 7.3434864974919 8.17949590077914 6.83761640087576 7.80664442119019 7.91602758334216 0.198134344973746 0.190303951238434 0.19134542744739 0.192926648258734 0.184142754360127 0.19199075466324 0.187531118851940 0.180052720697562 0.186676968984897 0.184937957809608 0.178836062884445 0.179529998808965 0.190877139493464 0.186072269806670 0.186358798184747 0.182752453859806 0.205059508833547 0.187815233448299 0.184316843640897 2 2 + 16219383 16221146 16220558.636 16217935 16221299 + gene protein_coding_gene FALSE TRUE AT2G38780.1 binding similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88378.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.37092973206835 -2.59258455985715 0.0307369114870830 1 3.3067058622434 14.4234006008878 -0.37092973206835 0.182673527171948
AT3G57080_at 6.97999532087209 6.99785305672774 6.22074404635198 6.13826975211677 6.88900538772639 6.84139472722142 5.77687648341271 5.52357162539098 5.02261441369227 5.7592521556367 5.61237473592645 5.76940182212521 5.83519685091854 5.7291258603208 5.68426391608418 5.291999863289 6.02954109778982 5.78175307454219 5.80989938808622 0.207310569576267 0.204656281573821 0.214775394392236 0.20544779317219 0.209264474596956 0.220903498739226 0.202713407290328 0.208251200157811 0.225855660491669 0.212690621140443 0.213013254432836 0.202720492335347 0.211909764731995 0.210957801316148 0.218082724876892 0.207070017263036 0.212323575467243 0.212660237126940 0.212478359020252 3 3 + 21136935 21138425 21137561.091 21136836 21138615 + gene protein_coding_gene FALSE TRUE AT3G57080.1 eukaryotic rpb5 RNA polymerase subunit family protein similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT2G41340.1); similar to RPB5d [Brassica napus] (GB:AAF81222.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain RNA polymerase Rpb5, N-terminal; (InterPro:IPR005571) 0.194448928453026 2.59212922428778 0.0307591736106219 1 3.30605014377289 12.0446117025256 0.194448928453026 0.0469329334039118
AT1G28320_at 7.36663942593653 7.48216876663695 7.61046261903016 7.34358487604868 8.56747679850637 7.35733427003882 6.85888635993524 5.8405319741049 6.11173986850345 6.11005520441326 6.31718003531565 6.22664881148842 6.64055941382346 6.30283514353221 6.03326941065714 6.83964437474506 5.94819378990635 6.16775770022206 6.03790609392822 0.23973192156826 0.23973192156826 0.245796973173116 0.243491557269713 0.24327429688394 0.245805132991611 0.240775682523121 0.243593489344322 0.254623867258193 0.247385333800188 0.23973192156826 0.241446931140856 0.241085099345893 0.248895062998773 0.254864330651393 0.23973192156826 0.254366438514664 0.248136387117558 0.249194690149632 1 1 - 9920779 9921663 9921162.727 9920494 9924475 - gene protein_coding_gene FALSE TRUE AT1G28320.1 protease-related similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to putative protease/hydrolase [Lycopersicon esculentum] (GB:ABH07902.1); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.527801019299459 2.59208688980984 0.0307612442447501 1 3.30598917894374 13.5014247065678 0.527801019299459 0.278293280340668
AT2G44360_at 8.19394766400476 8.16117341507014 7.96319488287827 8.1864102146009 8.17180472087643 8.10597637220338 7.44109017755938 7.59909814763963 7.54135278527258 7.30792887586915 7.55157138426051 7.7088713441366 7.24600589088319 7.63229740102396 7.5910837431826 7.16026684437637 7.35739387407213 7.39183917521821 7.11412110710848 0.155707699336473 0.155285813544615 0.163535238518792 0.160427007060082 0.165683737482232 0.155225285699304 0.160653780913379 0.156675923284883 0.166670312908471 0.159080232300064 0.154615674855565 0.149224472610005 0.159009051632595 0.15282471298629 0.155352526458859 0.155930129968310 0.166300732190757 0.170364350916252 0.163842503657029 2 2 - 18327937 18328626 18328145.545 18327808 18328772 - gene protein_coding_gene FALSE TRUE AT2G44360.1 similar to Os09g0553800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063883.1); contains domain BRCT domain (SSF52113) 0.195900573816027 2.58975379399988 0.0308755776735632 1 3.30262937172084 15.3658621809679 0.195900573816027 0.0490081292890549
AT1G43700_at 9.56816291229205 9.60804971280458 10.0528958597568 10.0047544304370 10.4345835340892 10.1810340008485 9.9086856589301 9.56387296932247 9.26105886418087 9.63177438774455 9.55780233110316 9.31610186307268 9.5967889207145 9.52889497150396 8.93768412113748 9.49101889612283 9.8136666590488 9.28659100835793 9.62601596114035 0.103543745139480 0.102248523540500 0.107007409919128 0.108428563542549 0.10859374058886 0.108536683735713 0.108046935247698 0.107542070684790 0.127061733125316 0.107398521953959 0.104407910088647 0.104752321201978 0.108043530963305 0.109914881665232 0.106961451765602 0.102248523540500 0.106677872597780 0.113557925940210 0.104251765454764 1 1 + 16487251 16488418 16487897.818 16486671 16488681 + gene protein_coding_gene FALSE TRUE AT1G43700.1 VIP1 (VIRE2-INTERACTING PROTEIN 1); transcription factor Encodes a VirE2-interacting protein. VIP1 mediates nuclear translocation of VirE2 via its amino half, and interacts with histone H2A via it carboxyl half. similar to bZIP transcription factor, putative (bZIP69) [Arabidopsis thaliana] (TAIR:AT1G06070.1); similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31370.5); similar to bZIP transcriptional activator RSG [Nicotiana tabacum] (GB:BAA97100.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.220454834153143 2.58971651559412 0.030877407994177 1 3.30257568885603 19.3889307185124 0.220454834153143 0.074853236161546
AT1G22400_at 6.32027534558004 6.91805670435097 7.30583056906672 8.29298287553055 6.01489249808868 6.10807608975296 5.37060459625088 6.21044748275664 6.6340687621897 5.11247167654011 6.56647923651584 5.83911581239079 6.26985040167451 6.10612295612237 4.75729415163032 6.06805582686947 5.36482350649173 5.31521908733175 4.93349623761003 0.250127311414676 0.246417268475736 0.268712453785304 0.255159700757606 0.246417268475736 0.265733447538197 0.258239284268987 0.246417268475736 0.254109659282567 0.249939273646819 0.246417268475736 0.25589618436167 0.246417268475736 0.253264482097592 0.256478417488518 0.248603015341055 0.272100973232165 0.262113906741543 0.252861906605665 1 1 - 7903863 7904287 7904111.8 7903649 7906662 - gene protein_coding_gene FALSE TRUE AT1G22400.1 UGT85A1 (UDP-glucosyl transferase 85A1); UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Identical to Cytokinin-O-glucosyltransferase 2 (EC 2.4.1.-) (Zeatin O- glucosyltransferase 2) (UGT85A1) [Arabidopsis Thaliana] (GB:Q9SK82); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22360.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G22380.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); similar to glycosyltransferase NTGT5a [Nicotiana tabacum] (GB:BAD93689.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.475728686403414 2.58929758769965 0.0308979843639706 1 3.30197241159634 12.2405869440847 0.475728686403414 0.247524525696853
AT1G16740_at 8.48623227153436 8.48715704772084 8.50346636619397 8.59730567092578 8.45086130654857 8.29175085187393 8.35020368775872 8.30950818074862 7.24036447989833 7.70958597782541 8.18271684930785 8.14728595795746 7.09578443423087 7.7593101475705 8.61041555148361 7.89179598372511 7.69443784569269 7.61454977828498 7.72335826562779 0.131721246898181 0.131040710200267 0.132067627665172 0.130247209684109 0.131817776123524 0.131266490179786 0.130181291256617 0.129077063955685 0.146675151298025 0.129264566695519 0.129058001491874 0.128250722665412 0.137888542906128 0.127897922291372 0.133213705157911 0.126276270215941 0.143445873007116 0.130820686223823 0.126680044653477 1 1|0 +|/ 5727850 5728919 5728643.2 5727683 5729073 + gene protein_coding_gene FALSE TRUE AT1G16740.1 ribosomal protein L20 family protein similar to Os01g0734100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044164.1); similar to 50S ribosomal protein L20 [Ehrlichia canis str. Jake] (GB:YP_302783.1); similar to Os05g0528200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056116.1); contains InterPro domain Ribosomal protein L20; (InterPro:IPR005813); contains InterPro domain Ribosomal protein L20, bacterial and organelle form; (InterPro:IPR005812) 0.184669123013025 2.58879055395586 0.0309229067913597 1 3.30124225980692 16.1507139944042 0.184669123013025 0.0327338426712065
AT4G23010_at 9.17544337635723 9.47663776927507 9.7469938261163 9.98397769851656 9.63329385340063 9.10860038607143 8.21923029894192 8.16393754348364 8.6215292163362 8.31151083800751 8.27358488438925 7.45361136265893 8.13668776355817 8.18798517344563 7.26453004462407 8.02814554994352 8.34154220712147 8.30315406020164 8.03944061720036 0.133736032359408 0.137964288998519 0.140411706378070 0.145427346182653 0.137612824608057 0.148977566910123 0.136483755183703 0.133675342522154 0.139563479397164 0.130979657478580 0.129347364650148 0.131301964719568 0.131296309643449 0.134868832313527 0.138341108354458 0.130003461910563 0.128833724665638 0.131178865972616 0.133262984006239 4 4|0 -|/ 12060382 12061411 12060830.778 12060142 12062827 - gene protein_coding_gene FALSE TRUE AT4G23010.1|AT4G23010.2 ATUTR2/UTR2 (UDP-GALACTOSE TRANSPORTER 2) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G12600.1); similar to hypothetical protein LOC664769 [Danio rerio] (GB:NP_001035084.1); similar to Os03g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048771.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.266949550453289 2.58758530756463 0.0309822305258237 1 3.29950666028446 17.3499220213158 0.266949550453289 0.112849680253817
AT3G60620_at 5.84463223802823 5.53398435663356 4.52813330302947 5.14659088450114 5.73585318544907 4.88893414757427 6.35487381669046 6.21234822307045 6.09612094477553 5.54205260378725 5.90172939473307 6.24939900003782 5.62316518947777 5.87035457278003 6.41268259221166 6.36963370505733 5.17108910310168 6.02510247112244 5.78414729999149 0.183712424710744 0.179184148412028 0.201539659341661 0.191164379306751 0.176536833039456 0.180265274266852 0.196243335532924 0.178463385747810 0.192107706282938 0.176536833039456 0.179878488353307 0.176754021272470 0.180503760233685 0.177414604828515 0.181981456837018 0.181445859796865 0.184821363593868 0.179967582690015 0.18027641761843 3 3|0 +|/ 22418366 22419182 22418753 22417381 22419572 + gene protein_coding_gene FALSE TRUE AT3G60620.1 phosphatidate cytidylyltransferase family protein similar to phosphatidate cytidylyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G45150.1); similar to putative phosphatidate cytidylyltransferase domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08021.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) -0.383063778876693 -2.58677417897772 0.0310222201936836 1 3.2983386134604 11.4108361625804 -0.383063778876693 0.190876806435407
AT2G42620_at 7.67998354197668 7.98890927389856 7.33331518883693 7.59855568345872 8.17407825142918 8.3655404019899 7.06003280036041 7.47472782898509 8.35799527378303 8.17755953673728 8.45874198163974 8.329305302479 8.67719209824841 8.5536048884564 7.9902934884524 8.6422202518032 8.45994992512354 8.37597151416309 8.17773371002285 0.132605241445342 0.135609753846070 0.142133971078184 0.136393360236388 0.135353383380182 0.132974848420123 0.144625436595060 0.134716242569258 0.136052220555497 0.131727191248107 0.130583177474193 0.131587390111632 0.131863181542136 0.132065632566650 0.136011390375306 0.130344781674656 0.130392074612211 0.138877719821477 0.136435848547028 2 2 + 17764768 17765304 17765072.364 17763217 17765545 + gene protein_coding_gene FALSE TRUE AT2G42620.1 MAX2 (MORE AXILLARY BRANCHES 2); ubiquitin-protein ligase The mutations at MAX2 cause increased hypocotyl and petiole elongation in light-grown seedlings. Positional cloning identifies MAX2 as a member of the F-box leucine-rich repeat family of proteins. MAX2 is identical to ORE9, a proposed regulator of leaf senescence. similar to F-box family protein (FBL4) [Arabidopsis thaliana] (TAIR:AT4G15475.1); similar to RAMOSUS4 [Pisum sativum] (GB:ABD67495.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.257553055619082 2.58611900908441 0.0310545590767351 1 3.2973951563843 16.0462292571053 0.257553055619082 0.105891546344321
AT1G17720_at 6.44387138054759 5.93827720466841 6.18255431153696 5.02662459918744 5.83225036758382 4.54863903262348 5.4690866038989 4.78209096112622 5.55988765241505 4.87464232655771 6.71979564459066 6.74161500974441 6.96979124922849 7.01122494874288 6.79774594975527 6.56352540026405 6.47747868309991 5.52792167123943 4.86540431141299 0.244706763557695 0.238245853363859 0.245844420992110 0.239918517086563 0.249419545334563 0.244020668794922 0.237612135509634 0.242300941141571 0.240541328821906 0.238475513301503 0.235871454721708 0.240713949161379 0.235871454721708 0.245686409734680 0.236316214390770 0.23945466244409 0.256946295764308 0.244797316103668 0.24411860380392 1 1|0 -|/ 6094000 6095169 6094455.286 6093201 6098376 - gene protein_coding_gene FALSE TRUE AT1G17720.1|AT1G17720.2 ATB BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor); nucleotide binding type 2A protein serine/threonine phosphatase 55 kDa B Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (PP2A, subunit B, beta isoform) (AtB beta) (PP2AB2) [Arabidopsis Thaliana] (GB:Q39247;GB:Q9FZ61); similar to ATB ALPHA (protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G51690.1); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046)|Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform (PP2A, subunit B, beta isoform) (AtB beta) (PP2AB2) [Arabidopsis Thaliana] (GB:Q39247;GB:Q9FZ61); similar to ATB ALPHA (protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G51690.2); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009) 0.620172381480264 2.58604532831317 0.0310581980613503 1 3.29728905496249 11.3784820158358 0.620172381480264 0.333390608990176
AT4G02890_at 10.9499540617959 11.3868603488572 11.5137324329481 11.7216581220451 11.6758616264107 11.4205245319995 11.8351053964118 12.0107831585479 11.6078887827803 11.6756122825279 12.3082805997974 12.1572632378617 11.9766247275552 12.0983300084986 12.0053631202306 12.3198098898220 11.9298927032689 12.0249049756374 11.6409268717702 0.122603732756438 0.108728361536685 0.110732549126144 0.105817872383764 0.108331279629877 0.113780622096711 0.114467852414095 0.110601927387993 0.116701052309136 0.112236164596343 0.105817872383764 0.105817872383764 0.105817872383764 0.108027343459027 0.107040958754965 0.106389433921257 0.120264343232951 0.111270623734626 0.108385708253869 4 4 - 1278758 1279179 1278906 1278530 1280029 - gene protein_coding_gene FALSE TRUE AT4G02890.1|AT4G02890.2|AT4G02890.3 UBQ14 (ubiquitin 14); protein binding Polyubiquitin gene containing 4 ubiquitin repeats. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ10 (POLYUBIQUITIN 10) [Arabidopsis thaliana] (TAIR:AT4G05320.6); similar to ubiquitin-like protein [Phaseolus vulgaris] (GB:AAB36545.1); similar to pentameric polyubiquitin (GB:AAA34124.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626)|Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ11 (UBIQUITIN 11), protein binding [Arabidopsis thaliana] (TAIR:AT4G05050.2); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to ubiquitin [Antirrhinum majus] (GB:CAA48140.1); similar to ubiquitin-like protein [Phaseolus vulgaris] (GB:AAB36545.1); similar to pentameric polyubiquitin (GB:AAA34124.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.249175557877744 2.58558808845323 0.0310807901244075 1 3.29663062397628 23.4363272783071 0.249175557877744 0.0994394300193066
AT2G43810_at 5.60561839729037 5.95982350364011 5.42443010431423 5.83132068640016 6.1477818024872 5.90162730574531 5.4977248806717 5.88430782878525 5.11063999747817 4.79515971927612 5.4521226280668 5.52642287011325 5.97308602071365 5.41214698669849 5.64696257754449 5.95858605070494 5.52425635278779 4.79822644936124 5.29221825650683 0.211731283116023 0.210281735114256 0.208170841488553 0.209840433527631 0.209027673097377 0.217175355654824 0.210370901144597 0.221497235989712 0.218459111213296 0.21951913227493 0.213057495101285 0.206745087038283 0.217093024800934 0.216789366689266 0.206226855858100 0.203768322683054 0.216204782169166 0.205049526223309 0.218273367823998 2 2|0 +|/ 18156829 18157932 18157370.556 18156388 18158372 + gene protein_coding_gene FALSE TRUE AT2G43810.1|AT2G43810.2 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative [Arabidopsis thaliana] (TAIR:AT3G59810.1); similar to Os02g0510100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046930.1); similar to putative Sm protein F [Oryza sativa (japonica cultivar-group)] (GB:BAD23667.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.279945786525828 2.58539686374029 0.0310902434078753 1 3.29635525872465 11.0828204302097 0.279945786525828 0.122497720798505
AT3G51850_at 7.16007952298594 7.2154210817936 6.55230750257937 6.84213307713919 7.06867166841233 6.9428136680044 7.60859952724148 7.75053629461861 6.92670467042711 7.15139986758179 7.64691780400227 7.33174829295326 7.18602841055936 7.13996346748898 7.18553259615164 7.54173191500063 6.9939401317024 7.4856883284123 7.3514148259268 0.255401690063628 0.238184063842595 0.231725942971261 0.235388869691967 0.239598649931526 0.267638867293933 0.241745511689538 0.233881260263924 0.259958079851423 0.236100679467677 0.235349089381377 0.22839040426927 0.234885053327976 0.24420744923121 0.236234581959691 0.22839040426927 0.259010367762652 0.237852226607089 0.234580447281267 3 0|3 /|+ 19245103 19246474 19245751.222 19243444 19246862 + gene protein_coding_gene FALSE TRUE AT3G51850.1 CPK13 (calcium-dependent protein kinase 13); calcium- and calmodulin-dependent protein kinase/ kinase member of Calcium Dependent Protein Kinase similar to ATCDPK1, calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G18890.1); similar to CPK30 (calcium-dependent protein kinase 30), calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G74740.1); similar to CDPK19 (CALCIUM-DEPENDENT PROTEIN KINASE 19), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19450.2); similar to putative calcium dependent protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB92912.1); similar to calcium-dependent protein kinase 8 [Nicotiana plumba (GB:CAG27839.1); similar to calcium-dependent protein kinase [Arachis hypogaea] (GB:AAY67978.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.205703440327067 -2.58481727212284 0.0311189135889193 1 3.29552064419318 14.3711287876447 -0.205703440327067 0.0607044172911352
AT3G13740_at 7.40200092505578 7.62015349666688 7.27837480263781 7.0886010510566 7.80768253609072 7.71690864090446 8.01530442747752 7.67937072838666 6.57244706960154 7.21962207960593 7.16863033263719 6.92928459094864 6.70572580564739 6.88113374424772 6.58769357723062 7.24014827071664 7.15922585837003 6.42074047347246 7.59128857685204 0.238731070996767 0.229278040663858 0.233738484723883 0.228274504435155 0.230084391421188 0.231894788137014 0.228274504435155 0.233077222185680 0.246361738656598 0.236670443209581 0.232529160407033 0.233645855838305 0.240904820497145 0.230681102376619 0.247743063581802 0.231577510849830 0.248902638401076 0.262645489294574 0.242954444500904 3 3|0 +|/ 4504484 4505766 4505089.889 4504278 4506243 + gene protein_coding_gene FALSE TRUE AT3G13740.1 URF 4-related similar to RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT1G55140.1); similar to Similar to At1g55140 [Oryza sativa (japonica cultivar-group)] (GB:AAX92894.1); similar to Os05g0318300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055182.1); contains InterPro domain Ribonuclease III; (InterPro:IPR000999) -0.223764356875988 -2.58420732062875 0.0311491144817424 1 3.29464231531527 14.5832289462072 -0.223764356875988 0.0782957080377979
AT1G73760_at 7.53749809460826 7.81135276861652 7.35471357171651 7.09469003496123 7.77684152172796 7.59433229734547 7.00641663224372 6.68044127587814 6.72839053061085 7.09066448088098 7.21545716473936 7.21021146265734 6.90188478546766 7.39458466004353 7.00104977862525 7.09080184009172 7.37201362869522 7.60649156560939 7.00500407683644 0.177829254411395 0.166677917274043 0.167064110876481 0.170416261176263 0.166972654563801 0.169639068268850 0.166062298636250 0.175516754132757 0.179410976033454 0.166091741265228 0.166752307854616 0.164213845946439 0.169278131413772 0.166926040682124 0.176990865062046 0.168946685656311 0.178331143115360 0.169352022275176 0.169135760844816 1 1|0 -|/ 27743040 27743734 27743437.222 27742829 27744868 - gene protein_coding_gene FALSE TRUE AT1G73760.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G17970.1); similar to RING-H2 finger protein RHG1a-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82497.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.239462997449782 2.58178332148196 0.031269429134743 1 3.2911518034057 14.4397432197292 0.239462997449782 0.091927408223889
AT3G62820_at 8.17996307823943 8.62280113327497 7.78812087744183 8.04281411748034 8.66693108318365 8.4581040139018 7.91221854330053 8.11889280567827 7.78513906973595 7.2162939538033 8.17605747963323 8.77179578804281 7.69305403755416 7.13632304842907 8.47441039673766 8.0518934889359 7.69711113224241 7.71049423892511 7.46955592309478 0.175431783561535 0.174324960972625 0.172679782901634 0.180655974826518 0.176758772820294 0.177443229060053 0.177046215720265 0.170602829131800 0.174264836750026 0.188185237435861 0.178464146366311 0.176363455344023 0.170602829131800 0.184042605304664 0.172760629242190 0.173444312997502 0.184852245976612 0.173787557752755 0.179550676490749 3 3 + 23240770 23241303 23241080.182 23240724 23241476 + gene protein_coding_gene FALSE TRUE AT3G62820.1 invertase/pectin methylesterase inhibitor family protein similar to invertase/pectin methylesterase inhibitor family protein [Arabidopsis thaliana] (TAIR:AT2G47670.1); similar to Pectinesterase inhibitor [Medicago truncatula] (GB:ABE84986.1); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.252043217656568 2.58163392974792 0.0312768595403264 1 3.2909366844341 15.9508417566579 0.252043217656568 0.101984445667165
AT1G49410_at 6.84914039101569 7.0590500503055 6.48424999682123 6.73295372905726 6.40758383048986 6.29607994834153 7.43039852756782 7.24898570248885 5.74552801689003 5.8862201133464 5.95343815091296 6.7209430778543 5.53453375170406 5.87533321371421 6.49792996936872 5.9773473401001 6.27553396727937 5.5673038406674 5.7903273483231 0.156030028538999 0.156030028538999 0.162107907439954 0.163717598362423 0.159385813697163 0.169863722034885 0.166823759867746 0.168107331509308 0.159249670360389 0.162203620465857 0.161820825527475 0.168446544617484 0.163096293336298 0.168293055941798 0.158220288591326 0.160283294216939 0.176121588843093 0.171024979647224 0.162360506635395 1 1 - 18290406 18290546 18290480.818 18289409 18290570 - gene protein_coding_gene FALSE TRUE AT1G49410.1 TOM6 (TRANSLOCASE OF THE OUTER MITOCHONDRIAL MEMBRANE 6) Identical to Mitochondrial import receptor subunit TOM6 homolog (Translocase of outer membrane 6 kDa subunit homolog) (TOM6) [Arabidopsis Thaliana] (GB:Q9XIA7;GB:P83432) -0.211869935285016 -2.58156138064534 0.0312804686129974 1 3.29083221631097 12.7423822254126 -0.211869935285016 0.0673045475374088
AT1G11090_at 5.43627935886431 5.74255130924883 5.88045969109231 5.82156781696091 6.40956114358085 6.11920290125683 6.40629689671823 6.57808617226839 5.15143549099741 5.10635913729467 5.5774598304896 5.47405514594269 5.37123093635802 5.72418251647114 5.30530053399472 5.59696822686293 5.59471782238435 5.63844204719033 5.04963190812553 0.207050338617578 0.201364113617138 0.196636564144714 0.205142003088309 0.198413841431349 0.204599240285216 0.200209134828273 0.209780303132190 0.215766363467722 0.207558772933735 0.203998003139918 0.199167430322267 0.207791444341665 0.196007143336598 0.204865508567984 0.196399906314454 0.202431957621886 0.210211128115401 0.210932812231663 1 1 + 3703068 3703524 3703243.727 3702608 3703779 + gene protein_coding_gene FALSE TRUE AT1G11090.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G16120.1); similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT2G39420.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Os07g0565700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060014.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.224856787135154 2.58117331936765 0.0312997805133162 1 3.29027342296100 11.3681357335493 0.224856787135154 0.0795091972842837
AT4G34120_at 11.7341762408097 11.7024515040044 11.8831599331338 11.8868768256345 12.0375434693691 11.5725045625370 11.5390190177166 11.4979084263414 10.8451478409715 10.7410343726668 10.9359618501869 10.9146400812727 11.1263265170163 11.2062162175197 10.7421297369041 10.8308876315858 10.6921976460867 10.9874434456625 10.5233319774793 0.101000217735573 0.0984320334405362 0.102897799108881 0.102448473476719 0.10075789444318 0.106404688963574 0.0985859784085003 0.096586528254684 0.102657773691509 0.0991531340187934 0.100592719509069 0.098688689829829 0.095051106601721 0.0999294131715491 0.105137049119589 0.0977984421450664 0.109221604757916 0.0972276137051942 0.0992520491888256 4 4|0 +|/ 16341370 16342844 16342048.778 16341013 16343122 + gene protein_coding_gene FALSE TRUE AT4G34120.1 LEJ1 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 1) similar to LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) [Arabidopsis thaliana] (TAIR:AT4G36910.1); similar to CBS [Medicago truncatula] (GB:ABE82274.1); contains InterPro domain CBS; (InterPro:IPR000644) 0.226468197095353 2.58062940156157 0.0313268689516660 1 3.28949020523269 22.5480283913526 0.226468197095353 0.0809798828505061
AT1G74530_at 6.55190301658238 6.74937036340143 6.2941912065813 6.48167544368446 7.0365511343734 6.71512679970398 7.47370634125756 7.2468011126711 6.7362562466861 6.86469710882332 6.79506936787026 6.80998749475297 6.45534867503462 6.84936729550103 6.56390256542448 7.08020537334837 6.50771197380998 7.09098768238242 6.95605487287685 0.213937867699078 0.201623141706511 0.208275680270587 0.216842384419932 0.200688557145906 0.213964812574021 0.204728718183059 0.217878878409243 0.213854487564226 0.198675976988214 0.206157362958976 0.201335109363541 0.212161564823398 0.206146256661491 0.206714007320623 0.198675976988214 0.215242272407394 0.208053532965405 0.198675976988214 1 1 - 28013594 28014502 28014064.091 28013184 28015823 - gene protein_coding_gene FALSE TRUE AT1G74530.1|AT1G74530.2|AT1G74530.3 similar to Os08g0171000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061095.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54773.1) -0.228411292502784 -2.57906645671849 0.0314048396361319 1 3.28723965348502 13.6293699921041 -0.228411292502784 0.0828032258304397
AT3G27890_at 9.63823396627362 9.57330969956866 10.1567412455733 9.95078975215318 9.90301015166543 9.36661011088758 9.6952512171471 9.47203522925245 9.24776539064022 8.98256588188796 9.02710400914378 9.25333871716383 9.04463688039962 9.47750110038664 9.14153248426056 9.18946649730114 9.1644838658513 9.22609167477508 8.53837477846838 0.140194399538997 0.140694509369037 0.140475499334038 0.141361909671703 0.139858003520638 0.150365548436391 0.142578820668269 0.139419241344394 0.146121611584327 0.137462044170739 0.148228499236035 0.137462044170739 0.140393927983716 0.138063949289423 0.153683036223916 0.141711655935543 0.149987620317106 0.144139190271829 0.148452139873125 3 3|0 -|/ 10352053 10353130 10352440.667 10351893 10353270 - gene protein_coding_gene FALSE TRUE AT3G27890.1 NQR (NADPH:QUINONE OXIDOREDUCTASE); FMN reductase Encodes NAD(P)H:quinone reductase which is an FMN binding protein that catalyzes the reduction of quinone substrates to hydroquinones.The enzyme activity was confirmed by in vitro assay. Identical to NADPH:quinone oxidoreductase (EC 1.6.5.2) (NQR) [Arabidopsis Thaliana] (GB:Q9LK88;GB:Q9XFI5); similar to NAD(P)H:quinone oxidoreductase (NAD(P)H:QR) (GB:Q8H9D2); contains InterPro domain NADPH-dependent FMN reductase; (InterPro:IPR005025) 0.258598836835400 2.57858046606041 0.0314291243016208 1 3.28653986075046 18.7762083818947 0.258598836835400 0.107263401564659
AT4G25360_at 7.24027362706001 7.19869054279209 7.18035093055691 7.3121178336322 7.38434283044419 7.74023786094066 6.80651563207639 6.93601631464667 6.69748420018322 6.12763751776318 6.48891829783879 6.67945066217362 6.3947309146848 6.67674143330895 6.66237392289657 6.33354170889036 6.70418007419076 6.53471126829657 6.64507981533646 0.163775604811178 0.167533114765559 0.165577450981025 0.165601419747654 0.175376752292376 0.168795776471453 0.166757793642897 0.166225156137418 0.174449785475043 0.173122549232139 0.174434142724114 0.170412384539762 0.168937758956249 0.169590048959181 0.170690783577247 0.164139787356982 0.171599399746795 0.166897935083897 0.170308160269816 4 4 + 12971960 12972333 12972144.364 12969587 12972676 + gene protein_coding_gene FALSE TRUE AT4G25360.1|AT4G25360.2 similar to YLS7 (yellow-leaf-specific gene 7) [Arabidopsis thaliana] (TAIR:AT5G51640.1); similar to unknown [Gymnadenia conopsea] (GB:ABD66519.1); similar to Os01g0914800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045183.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.214076096136903 2.57788135830335 0.0314640916585978 1 3.28553319947137 13.7495173030416 0.214076096136903 0.0697655811703432
AT1G06840_at 5.14576460296529 4.45502418857263 5.02732146719025 5.03737488748959 6.0079141050545 5.72123242197203 4.49849851378124 4.50227823901038 6.12434063365596 4.94652937278533 5.50674937894899 5.47260394033657 5.16515156471189 5.82374076262048 5.39862270307568 5.18031755239081 4.44910601880556 5.09993028718304 5.37657323541278 0.206517610295221 0.203411148110352 0.222882921880461 0.215212270445535 0.211446402927486 0.216174118317025 0.208645306295895 0.210697941913992 0.214968204522306 0.207192799762846 0.203292835166538 0.201398893481317 0.202335352234966 0.203772002985842 0.20597459511041 0.204398152617478 0.208389574619313 0.208815248553614 0.203639680133051 1 1 - 2097871 2098583 2098247.091 2097746 2103478 - gene protein_coding_gene FALSE TRUE AT1G06840.1 leucine-rich repeat transmembrane protein kinase, putative similar to ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G01950.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G37450.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53590.1); similar to Protein kinase; Adipokinetic hormone [Medicago truncatula] (GB:ABE77704.1); similar to Protein kinase [Medicago truncatula] (GB:ABE77702.1); similar to unkown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56867.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.288808014867658 2.57732013011195 0.0314921911803176 1 3.28472507867362 10.4216804815681 0.288808014867658 0.129435641467605
AT1G11020_at 6.80631099528418 6.6377393383556 6.85721629118256 7.04484074696321 7.08448110309184 7.08799911677496 6.52928169701295 7.01451526686876 6.48681880689998 6.1037161496773 6.28991150699562 6.72307282175913 6.17663778992825 6.89926758369934 6.44446448453029 6.76323287252346 6.68161861580915 6.35600576708825 6.39561004854558 0.227621756851188 0.220212873094607 0.223201115572634 0.227877647688256 0.222255726056517 0.243095677942536 0.225685133394483 0.214429953463079 0.225317558620428 0.223051320332276 0.214429953463079 0.21727363601276 0.223031998593317 0.22210526514576 0.215566508702812 0.219485433622084 0.229120797399789 0.217027202406241 0.22981652951339 1 0|1 /|+ 3677815 3678292 3678057.111 3676691 3678524 + gene protein_coding_gene FALSE TRUE AT1G11020.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G22120.1); similar to zinc finger, C3HC4 type [Tetrahymena thermophila SB210] (GB:XP_001015280.1); similar to Os01g0610700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043547.1); similar to Os08g0384900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061703.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.242366959353419 2.57722684924765 0.0314968640200986 1 3.28459076256844 13.3180437854414 0.242366959353419 0.094641020455699
AT1G27190_at 6.75134578621553 7.27941596602334 7.09867931733804 7.07405720841262 8.04689585584238 7.72224311596706 7.44460928065021 7.72014467074515 8.06727779094772 7.53682438132265 8.57092306481884 8.3941633770321 8.27513499949406 7.83010816579652 8.10617771944355 8.24041791578103 7.767212289702 8.35498716048133 7.9000732328931 0.203358440825785 0.188067920985515 0.209300359051801 0.197434547300863 0.190404354710066 0.192006086228525 0.191605080382768 0.184647108696140 0.193107337133427 0.192245138899478 0.192459341124077 0.193431099847139 0.187245091388261 0.208710618875572 0.182695556522705 0.191162335703839 0.194002701820733 0.188396749764569 0.188908509798758 1 1 - 9446920 9447464 9447221.455 9446644 9448812 - gene protein_coding_gene FALSE TRUE AT1G27190.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G28450.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G69990.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78632.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.272127699997828 2.5771181441189 0.0315023104134174 1 3.28443423704419 15.4057317609609 0.272127699997828 0.117471300031795
AT1G74690_at 7.51712652939296 7.68232856004726 6.12163313503266 6.41690916193837 6.73978392875908 6.46126362640201 7.68838724463613 7.5843854986663 7.76022790094598 7.42324678601817 8.76050715356336 9.12508476442324 8.00351522359259 8.18825476901482 9.00863255930014 8.05782570020408 7.27283040015413 8.64817113092244 7.75132792448878 0.210671719879713 0.208387580886733 0.228302317520112 0.210910693927868 0.209720239361527 0.217204178112664 0.214388066353600 0.207785298685052 0.217914713071574 0.212382140286238 0.205387090354956 0.208621442156049 0.206271499070481 0.206476664312043 0.210488061109452 0.206518189721511 0.210605369924748 0.206930267260253 0.206103486184337 1 1 - 28065386 28065853 28065626.909 28064820 28068286 - gene protein_coding_gene FALSE TRUE AT1G74690.1 IQD31 (IQ-domain 31); calmodulin binding similar to IQD30, calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G18840.2); similar to IQ calmodulin-binding re (GB:ABE84487.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.222495493161712 -2.57402873245117 0.0316574967809298 1 3.27998583014120 15.0404956688416 -0.222495493161712 0.0779456273721935
AT2G31040_at 11.0940424441895 10.8694287488734 11.1943801742047 11.0449886522177 11.3694815923612 11.1082040230634 11.4268686093783 11.0573164360016 10.9523998436005 11.0499308293116 11.1926661345624 11.1990407400128 11.3951481635193 11.4407557888112 11.2122602089122 11.4129956062771 11.4827641188799 11.5688038240146 10.8622645325873 0.0743601246883314 0.0741117063687474 0.0788590349479644 0.0756180725684256 0.0766272148251904 0.0805113171891622 0.073540347882248 0.0740281101416955 0.0766647048590254 0.0731583812107703 0.0758515978377544 0.0736187142605096 0.0740227132499366 0.0766025033183811 0.0737442401447529 0.0744480650669496 0.0755303961305968 0.0731583812107703 0.0751654174916679 2 2|0 -|/ 13216191 13217335 13216703.5 13215983 13218162 - gene protein_coding_gene FALSE TRUE AT2G31040.1 ATP synthase protein I -related similar to hypothetical protein MtrDRAFT_AC135231g19v1 [Medicago truncatula] (GB:ABE82903.1) 0.237769402737488 2.57329960463103 0.0316942348463192 1 3.27893598668317 22.3045485308480 0.237769402737488 0.0911792681678596
AT4G02450_at 9.32134004703317 9.14844076796709 9.3994829541184 9.07631140360144 8.9622838547099 8.68929907314133 9.24193238691129 9.08192928484513 9.57215038175782 9.54928066178018 9.13936451275895 9.1934505431968 9.40299197357786 9.255075444126 9.34644583963508 9.3732651495249 9.14732316738398 9.14719268869867 9.5034742425897 0.118980611069438 0.112923571104805 0.115233374737001 0.116147223838560 0.124544683466289 0.121902000556068 0.121864505124686 0.120344447921277 0.118710941441454 0.113424003010681 0.115800636512886 0.114211377998050 0.115479349155980 0.126679147448071 0.113806244957587 0.112923571104805 0.128508885166396 0.123282659531998 0.115068178899076 4 4|0 -|/ 1074007 1074844 1074391.5 1073753 1075878 - gene protein_coding_gene FALSE TRUE AT4G02450.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03773.1); similar to putative p23 co-chaperone [Cryptomeria japonica] (GB:BAE92292.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052) -0.228781365404757 -2.57039505498153 0.031841013286391 1 3.27475391090634 18.5112643516603 -0.228781365404757 0.0837941503207863
AT3G11290_at 5.96035719730109 5.93231946017292 6.09636348942326 5.96051008335402 6.22827631545566 6.61106970596966 5.94514335228645 5.68816163732228 5.86667494042211 5.61985374813594 5.71000323774195 5.42661311045828 5.65529319537212 5.97485442628352 5.85008185973231 5.71360845207463 5.97852623782161 6.05377918183866 5.55817350668893 0.167444351948012 0.172151017825792 0.173934937105651 0.168192083254502 0.175931737127292 0.171546665740156 0.170490653919187 0.176156946508504 0.178214851843473 0.180556868835400 0.180747440984917 0.167642285160309 0.184223457419588 0.176633944685487 0.180973476837449 0.167444351948012 0.182883159915963 0.169822875411621 0.171003176366061 3 3 - 3535785 3536338 3536127.091 3535616 3537849 - gene protein_coding_gene FALSE TRUE AT3G11290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G11310.1); similar to PIF-like orf1 [Daucus carota] (GB:ABB83643.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.228168525514845 2.56963050166928 0.0318797634595074 1 3.27365309981326 11.7912313357012 0.228168525514845 0.0833205001995712
AT4G38690_at 8.27671957792476 8.42847755606573 8.41627401192197 8.55610976046635 9.17663621209755 9.25065776087715 9.35281507223129 9.44960403213386 9.38256643804857 8.76803843671426 9.94041397843673 9.25168748092196 9.77791679781423 9.57515874732861 9.29441329130595 9.21798517321638 8.91333537958769 9.57786016440474 8.96707181916005 0.113432287211958 0.113305273976226 0.116192193028847 0.115914962292803 0.107840648406977 0.109391370453157 0.116378107606839 0.11253686210875 0.112528320676693 0.116733907617078 0.112203133464213 0.107570149425298 0.112443126086514 0.113321024186360 0.113733064373193 0.115050560195836 0.112056768513351 0.113382517717587 0.121069968872150 4 4 - 18074750 18075295 18075072.818 18074469 18075759 - gene protein_coding_gene FALSE TRUE AT4G38690.1 1-phosphatidylinositol phosphodiesterase-related similar to 1-phosphatidylinositol phosphodiesterase-related [Arabidopsis thaliana] (TAIR:AT4G34920.1); similar to Ki1 protein [Beta vulgaris] (GB:AAO92349.1); contains InterPro domain Phosphatidylinositol-specific phospholipase C, X region; (InterPro:IPR000909) 0.188693094368964 2.56841199841494 0.0319416200338625 1 3.27189870542784 18.1048227185988 0.188693094368964 0.0414724384144142
AT2G36630_at 4.96260661958082 4.93170426532304 6.31107263357908 5.99501672931623 7.4334474572471 5.91627839004323 7.29611547662433 7.41923969296874 7.03303908207419 6.41447058931138 7.48080190100955 7.7889072319629 7.94193981797882 7.40287343084704 7.99101744920554 8.153255193822 6.1694859859978 7.35142074432573 6.89691322856995 0.267133809122294 0.264727720945583 0.268336134265775 0.261631586970668 0.255587952078540 0.257451845353525 0.257571779706714 0.255596111078421 0.267655831890789 0.251753296603723 0.251513658643835 0.255034740699581 0.261868844540386 0.273337201122448 0.253045224244615 0.251513658643835 0.279648934583680 0.252878599753644 0.265535502601102 2 2 - 15360226 15361398 15360854.9 15359570 15362256 - gene protein_coding_gene FALSE TRUE AT2G36630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25737.1); similar to Os03g0726500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051136.1); similar to membrane protein-like protein [Glycine max] (GB:ABC47859.1); contains InterPro domain Protein of unknown function DUF81; (InterPro:IPR002781) 0.507512854165338 2.56786778370389 0.0319692859844563 1 3.27111515533692 13.4414036677747 0.507512854165338 0.269087918245564
AT4G22220_at 10.7084756511118 10.6676130686206 10.8938486995671 10.8298097239198 10.7962833568570 10.7538420248151 10.7829271499279 10.7818251801674 9.54312592158324 9.82034384174546 9.89385106125064 9.8398905387358 9.93513337927443 9.87901207898467 9.9239145783109 9.88524304914333 10.3181975803332 9.8502999580672 9.65371169738357 0.0979053595864573 0.091268384121757 0.0925985671871021 0.09155959588439 0.0901974554158213 0.0948445924048878 0.0932672621886973 0.0948960348605314 0.108261678574466 0.0902667775197611 0.096987831974044 0.0942924987234815 0.0979527067216911 0.0924720201515234 0.0892994340858112 0.0950556827138067 0.0980498766564128 0.0932519510186672 0.0929789811796844 4 4|0 -|/ 11759552 11760858 11760519.6 11759167 11760972 - gene protein_coding_gene FALSE TRUE AT4G22220.1 ISU1 (Iron-sulfur cluster assembly complex protein) Encodes a mitochondrial protein similar to E.coli IscU. In bacteria, IscU is a scaffold protein accepting sulfur and iron to build a transient Fe-S cluster,which is subsequently transferred to a target apoprotein. similar to ATISU3/ISU3 (IscU-like 3), structural molecule [Arabidopsis thaliana] (TAIR:AT4G04080.1); similar to Os05g0568100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056355.1); similar to iron-sulfur cluster assembly protein IscU [Chlamydomonas reinhardtii] (GB:AAL29442.1); similar to Os01g0662600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043783.1); contains InterPro domain FeS cluster assembly scaffold IscU; (InterPro:IPR011339); contains InterPro domain Nitrogen-fixing NifU-like, N-terminal; (InterPro:IPR002871) 0.175767323303961 2.56757934569173 0.0319839589828405 1 3.27069986956912 20.5833714059983 0.175767323303961 0.0150599542805110
AT3G14010_at 8.26515049360293 8.25408167229532 8.21863729935603 8.21836828756097 8.93495035152417 8.501965575878 8.03278124427753 7.47889365560655 8.9216461950836 8.81629245386442 9.14131486755183 8.7604791620739 8.89307966109465 9.13846547618344 8.6440207365096 9.18815311871944 9.01809173072646 8.86093476607328 8.849803119041 0.108694409817317 0.108038262920289 0.111876147655257 0.115001215110209 0.109251606397382 0.110457315779568 0.111271276989207 0.120467095202874 0.122263841499316 0.109810568099052 0.105527264491317 0.10891570836775 0.105816250787458 0.105527264491317 0.108920368234647 0.105527264491317 0.111139768383281 0.111638924066473 0.106734057183036 3 3|0 +|/ 4639718 4640505 4640088.333 4636372 4640988 + gene protein_coding_gene FALSE TRUE AT3G14010.3|AT3G14010.1|AT3G14010.2 CID4 (CTC-Interacting Domain 4)|CID4 (CTC-Interacting Domain 4); protein binding hydroxyproline-rich glycoprotein family protein, similar to Mrs16p (GI:2737884) (Saccharomyces cerevisiae); weak similarity to ataxin-2 related protein (GI:1679686) (Homo sapiens). Included in a family of CTC interacting domain proteins found to interact with PAB2. similar to CID3 (CTC-Interacting Domain 3) [Arabidopsis thaliana] (TAIR:AT1G54170.1); similar to Os02g0480900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046850.1); similar to Ataxin-2, N-terminal [Medicago truncatula] (GB:ABE81532.1); contains InterPro domain Ataxin-2, N-terminal; (InterPro:IPR009604); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920) 0.276870231335558 2.56742951973783 0.0319915833995371 1 3.27048415445176 17.1471775871108 0.276870231335558 0.121679688393900
AT2G02870_at 6.81836482207081 6.17083321937222 7.09282834695191 6.60130090348986 6.61690386498775 6.58265605518973 6.70747010313487 6.01780588160324 5.70105505864416 6.13682110598848 6.811346444807 6.68566527137479 6.11563641260664 6.79396092542079 6.16797640149205 6.4320477719825 6.52739331251936 5.96431853368359 6.13660112853082 0.154148307191877 0.157866230732790 0.166226799579748 0.154587492798815 0.162304355578830 0.157127296727069 0.152029075007401 0.157156500688304 0.166463200107523 0.162121421565873 0.152968438537113 0.152076470263710 0.162319756948222 0.152990692349146 0.162936876118082 0.163281097556423 0.152679080812556 0.163481008054587 0.152705231400431 2 2 + 839331 839734 839549.273 837811 840152 + gene protein_coding_gene FALSE TRUE AT2G02870.1|AT2G02870.2|AT2G02870.3 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G14330.1); similar to kelch repeat-containing F-box family protein, putative [Solanum demissum] (GB:AAT40540.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch motif; (InterPro:IPR006651); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.370302244645441 2.56730991382794 0.0319976712838758 1 3.27031194953857 12.7904131822452 0.370302244645441 0.184585823208318
AT3G58050_at 6.75063012798486 6.77539532488397 6.56967314305604 6.78107088743221 6.98750789801754 6.23990324373975 6.49327218364632 5.86247854878237 5.61261053031973 6.00393455183974 6.49141054706384 6.47546535755894 6.19589272700451 6.86007427503575 6.41160075712918 6.48452027964432 6.13020321777844 6.20444797919239 6.01218829190544 0.243613814180593 0.230188106672271 0.241673518650801 0.236045597442165 0.238429122201920 0.248966347026268 0.241568398957117 0.234289502015162 0.279284336459247 0.228862921068798 0.228094271862450 0.233084045267877 0.229755384728160 0.229295411935051 0.238220400738933 0.247313469860733 0.243801555333833 0.248480736512299 0.240887009132156 3 3 + 21507427 21507970 21507683.909 21503516 21508134 + gene protein_coding_gene FALSE TRUE AT3G58050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41960.1); similar to Os03g0226600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049440.1); similar to Os10g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064024.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK00428.2) 0.352276090633146 2.5644249347423 0.0321448710202879 1 3.26615831383033 12.6989645949792 0.352276090633146 0.173237628655488
AT3G08550_at 8.14856999603331 8.3379026178208 8.3103593134616 8.34616910566714 8.21536776773889 7.92805265803987 8.38445641297344 8.23853475421159 7.46861776624622 7.40072027880361 7.85958378755098 8.17188560894885 8.0281623964412 7.91506551172393 7.90168723731739 7.83522484634331 7.71964787269977 8.0498921406222 7.4554776199321 0.139084591982295 0.142274788505100 0.144610761107859 0.139622016545575 0.142695973847268 0.154404468795889 0.150849938532881 0.141541285857340 0.146666822323107 0.15204020301073 0.141339493917902 0.14055626773798 0.141168778802752 0.145599062787683 0.148247671907570 0.141495139827814 0.151351155243430 0.146683970900752 0.151004906796609 3 3|0 +|/ 2598376 2599470 2599113.9 2596434 2599825 + gene protein_coding_gene FALSE TRUE AT3G08550.1 KOB1 (KOBITO) mutant is Dwarfed; Cellulose deficient; Plasma Membrane Protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57200.1); similar to SDL-1 protein [Nicotiana plumba (GB:CAD21166.1); similar to SDL-1 protein [Medicago truncatula] (GB:ABD33320.1) 0.208079859756201 2.56345326660523 0.0321946023353387 1 3.26475938925127 15.9270510266766 0.208079859756201 0.0649755820512039
AT3G09980_at 8.25555538605081 8.38534519422597 8.59500333012693 8.48795405787148 9.32113032208177 8.63777910925337 8.77687977649166 8.71430343423032 7.88553878264048 8.70570336745447 9.16138188074086 8.70966721536596 9.01278939919589 8.77626715740017 8.36929996970833 8.94150465953519 8.64760251034055 8.1696231731998 8.59868001721352 0.166123894728979 0.166969967331296 0.16299484974857 0.165136186788813 0.165416465652688 0.176136155361399 0.168165886670604 0.178062201270318 0.18426553755402 0.163244367107825 0.158909819385374 0.164143916879644 0.164438075616816 0.174465030147313 0.169155871403089 0.158909819385374 0.179351253089762 0.177733341347003 0.158909819385374 3 3|0 +|/ 3069373 3070519 3069592.75 3069236 3071425 + gene protein_coding_gene FALSE TRUE AT3G09980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03660.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033); contains InterPro domain t-snare; (InterPro:IPR010989) 0.277161015166694 2.56259481689093 0.0322386037300597 1 3.26352347987298 17.2068226853525 0.277161015166694 0.122268921362233
AT1G78100_at 7.689613862531 7.80599229837461 8.10346518576611 8.18136050499318 8.30639887705829 8.18388830951382 8.77353571638282 8.3829403900344 8.14249281464495 8.13118730831155 8.57273980854722 8.22528567277053 8.703541449075 8.53080417583725 8.53043110305277 8.76119374620876 8.83020795083597 8.28064176980508 8.17323040299144 0.164701288788834 0.161947632427417 0.171676189877501 0.167671649560559 0.16538620221027 0.163637169272371 0.158987517442666 0.162072284009767 0.173927669703778 0.160867488232675 0.156826292006905 0.158753101301509 0.157754945176776 0.162389748579198 0.173047171197768 0.163274721426343 0.159220100040242 0.159832365184894 0.155477240213688 1 1 + 29393218 29393747 29393501.364 29392688 29394005 + gene protein_coding_gene FALSE TRUE AT1G78100.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G22220.1); similar to P0432B10.4 [Oryza sativa (japonica cultivar-group)] (GB:BAB90386.1); similar to Os05g0490300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055899.1); similar to Os01g0812200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044594.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.218071593351367 2.5614846575507 0.032295597174135 1 3.26192520272249 16.5300623354981 0.218071593351367 0.0748719296452442
AT4G11830_at 4.74658812121338 5.11545033010571 5.00912010527592 4.82912318981098 5.31476031931116 5.05440502853599 4.96270184571485 4.57020359202981 4.64073358076606 4.89242812472828 5.21368712035669 5.16788851322278 5.01489838488829 5.27738123254846 4.7810700768923 5.78901350787875 4.47711207673446 5.20853295528208 4.87756360210197 0.161361900045192 0.158842049027464 0.163059521973555 0.160515987472684 0.165773044087688 0.165372816277234 0.159080838409648 0.160788125888431 0.163946120287511 0.163116459746045 0.160620995914491 0.168863616166833 0.161085566606954 0.158670092482171 0.164966519037013 0.159813980331761 0.162610404768709 0.159522960103977 0.165821603051611 4 4|0 -|/ 7115989 7121031 7118075.474 7115730 7121239 - gene protein_coding_gene FALSE TRUE AT4G11830.1|AT4G11830.2 phospholipase D gamma 2 / PLD gamma 2 (PLDGAMMA2) Encodes one of three phospholipase D enzymes of the gamma class. Identical to Phospholipase D gamma 2 (EC 3.1.4.4) (AtPLDgamma2) (PLD gamma 2) (PLDGAMMA2) [Arabidopsis Thaliana] (GB:Q9T051;GB:Q9XH77); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D [Gossypium hirsutum] (GB:AAD43343.1); similar to phospholipase PLDb2 [Lycopersicon esculentum] (GB:AAG45488.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973)|similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D [Gossypium hirsutum] (GB:AAD43343.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); similar to phospholipase PLDb1 [Lycopersicon esculentum] (GB:AAG45487.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.257869534705471 2.56022931383576 0.0323601668928620 1 3.26011793153363 9.91018060950351 0.257869534705471 0.108113880883262
AT3G16770_at 12.4609576060804 12.5236078345211 12.5037112045167 12.3158690597259 13.0167548614698 12.9126675520513 11.7975804057423 11.809302561175 12.5746447882462 12.4799296996845 12.5692695104013 11.9850507422834 12.8456337657541 12.4482502344696 12.0159848546886 12.5503505921438 12.7772311371205 12.3649383821140 12.7799104324801 0.0824348755959335 0.0840688244107038 0.0817851519758568 0.0839782676616126 0.083943104470338 0.083005923914417 0.0852773382549646 0.0854929687012554 0.0848574516696767 0.0817851519758568 0.0826367246763734 0.0822388426943322 0.0817851519758568 0.083297369517004 0.0826278418173075 0.0817851519758568 0.0841024368804643 0.0822037923633596 0.0817851519758568 3 3 + 5706339 5706707 5706524.727 5705668 5707029 + gene protein_coding_gene FALSE TRUE AT3G16770.1 ATEBP/RAP2.3 (RELATED TO AP2 3); DNA binding / protein binding / transcription factor/ transcriptional activator Encodes a member of the ERF (ethylene response factor) subfamily B-2 of the plant specific ERF/AP2 transcription factor family (RAP2.3). The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.It is localized to the nucleus and acts as a transcriptional activator through the GCC-box. It has been identified as a suppressor of Bax-induced cell death by functional screening in yeast and can also suppress Bax-induced cell death in tobacco plants. Overexpression of this gene in tobacco BY-2 cells confers resistance to H2O2 and heat stresses. Overexpression in Arabidopsis causes upregulation of PDF1.2 and GST6. It is part of the ethylene signaling pathway and is predicted to act downstream of EIN2 and CTR1, but not under EIN3. Identical to AP2 domain transcription factor RAP2.3 (Related to AP2 protein 3) (Cadmium-induced protein AS30) [Arabidopsis Thaliana] (GB:P42736;GB:O23105); similar to RAP2.2, DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G14230.3); similar to AP2/EREBP transcription factor ERF-2 [Gossypium hirsutum] (GB:AAV51937.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.186241123231432 2.55967574326735 0.0323886817554078 1 3.25932098547000 24.9455981985814 0.186241123231432 0.0387662917036617
AT3G04490_at 5.70097259317325 6.42207952753609 6.09082133021718 6.20663764257557 6.22691584329942 5.56680233847972 6.27542485268763 6.19351945093244 7.24287070472837 6.78321551393126 6.26140912381891 6.51959266434609 6.35840687618124 7.17447126303418 5.77783343098712 7.05222202460886 5.89049728403703 6.41368237267331 6.97782649381544 0.312662196884460 0.27777734845949 0.27804708263909 0.289118882507673 0.277820413398423 0.293739499829169 0.269419075854337 0.265364119509112 0.272297267209119 0.28974386019581 0.271829609962950 0.275877051188194 0.265364119509112 0.268121531730446 0.265364119509112 0.265364119509112 0.329156376104179 0.281913215116756 0.27060830755769 3 3 + 1209374 1209630 1209521.8 1200648 1209875 + gene protein_coding_gene FALSE TRUE AT3G04490.1 exportin-related similar to Os10g0477000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064853.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK13158.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.347747337485112 -2.55694743479098 0.0325295907885001 1 3.25539326453292 12.8015560060889 -0.347747337485112 0.170953743708548
AT1G47310_at 8.14652352247516 8.56755438841464 8.3926432129496 8.33191995118915 9.0143765116781 8.60813266791692 8.18233833272635 8.15444906356277 8.34539459044953 8.26362319766163 8.58447283096267 8.5096052971287 8.29079217848069 8.07197111214183 8.34632320533654 8.52804906300965 8.49352036870977 8.43169844876331 8.08760640989837 0.185120229151211 0.184711881307861 0.190488185820243 0.183946646367405 0.188392416849296 0.185994302932512 0.185557353208218 0.188717269261516 0.188513695706146 0.181206506233204 0.189934863295058 0.184173676175693 0.182753194183849 0.186652034713665 0.183797739406423 0.179295646684453 0.189216619144011 0.186454485238573 0.203148002417552 1 1 + 17346465 17347029 17346670 17345354 17347242 + gene protein_coding_gene FALSE TRUE AT1G47310.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81232.1) 0.249448878101091 2.55607625028577 0.0325747153322827 1 3.25413912037315 16.744373270899 0.249448878101091 0.101906450027793
AT4G02430_at 5.22972089653193 4.38168968753825 5.37344622557587 5.06344150153305 5.37733395825347 5.24651408195115 4.93143076526592 4.28404117316507 4.60743987129729 4.9299003553618 4.87523786400929 4.99234050464802 5.04233421850313 5.07316839738179 4.65009040626082 5.72869681463772 5.36192908023582 4.91517701350293 5.08129288821151 0.237519101235659 0.232289087308063 0.232539240637419 0.227286246668465 0.233946223183605 0.227819017549521 0.228763464691132 0.232466814206379 0.237868395006795 0.23820079233885 0.238900446403856 0.233129073578643 0.236320728945723 0.250805122976049 0.226833727355942 0.231506360875448 0.236474049408466 0.24273418434253 0.226833727355942 4 4|0 +|/ 1069919 1070852 1070538.375 1068974 1072215 + gene protein_coding_gene FALSE TRUE AT4G02430.1|AT4G02430.2 pre-mRNA splicing factor, putative / SR1 protein, putative similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to ribonucleoprotein (GB:AAA32856.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.2); similar to ribonucleoprotein (GB:AAA32856.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.382728696821834 2.55566207233626 0.0325961906052758 1 3.25354288091777 9.962327032404 0.382728696821834 0.193596043133128
AT2G04400_at 10.0499951350222 10.0598686860317 10.5755290398413 10.585275301279 9.58773461946835 9.2600682814216 9.22103564536841 9.14587351553209 8.76704535804011 8.84395076708133 8.73611787685666 9.09562723216794 8.71381464478999 8.85935990531155 8.51613547039244 8.8974402404586 8.63551765183904 8.73239144272723 8.6518898713971 0.128940205280911 0.130555658747522 0.135014583935748 0.131179645068808 0.131722558883532 0.132288309431655 0.132514491398851 0.123627400200109 0.132189642946372 0.126043749875261 0.132094339023915 0.124449917109430 0.12688308650552 0.121367043510911 0.127456251917262 0.126702669719210 0.135504475990581 0.133237489582314 0.130021882950946 2 2|0 +|/ 1532413 1533366 1532795.5 1531147 1533734 + gene protein_coding_gene FALSE TRUE AT2G04400.1 indole-3-glycerol phosphate synthase (IGPS) Identical to Indole-3-glycerol phosphate synthase, chloroplast precursor (EC 4.1.1.48) (IGPS) [Arabidopsis Thaliana] (GB:P49572;GB:Q8LBV5;GB:Q9SJC9); similar to indole-3-glycerol phosphate synthase, putative [Arabidopsis thaliana] (TAIR:AT5G48220.1); similar to indole-3-glycerol phosphate synthase (GB:AAA60380.1); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060); contains InterPro domain FMN/related compound-binding core; (InterPro:IPR003009); contains InterPro domain Indole-3-glycerol phosphate synthase; (InterPro:IPR001468) 0.200981895454523 2.55394525852817 0.0326853607584477 1 3.25107143611122 18.5744704731160 0.200981895454523 0.0582264144831545
AT1G35680_at 11.1453246730798 11.1342192250656 10.5860258825185 10.5772515895694 10.9126155545436 10.9046286809636 11.2506929934746 11.2788709976579 11.4396116499409 11.3596683007361 11.5820577478795 11.8232757514721 11.1916191532953 11.3862172339542 12.1142540313366 11.4999027280092 11.1420808410412 11.4239196114073 11.4285687600404 0.0835923624496531 0.0832818043323976 0.0847058962511407 0.0862240894106094 0.081957475587893 0.0893921155815421 0.0852487679667694 0.085972997762398 0.0948489891147182 0.085451350584104 0.0835504160949489 0.0835115282690678 0.0840665959885643 0.0857895199182537 0.0882310951738931 0.0824115001877596 0.0882000960767188 0.0871036473970938 0.0845094786146313 1 1 + 13210081 13211420 13210641.818 13209948 13211630 + gene protein_coding_gene FALSE TRUE AT1G35680.1 50S ribosomal protein L21, chloroplast / CL21 (RPL21) Identical to 50S ribosomal protein L21, chloroplast precursor (CL21) (RPL21) [Arabidopsis Thaliana] (GB:P51412;GB:Q9SMM2); similar to NFD1 (NUCLEAR FUSION DEFECTIVE 1), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G30930.1); similar to Os02g0259600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046479.1); similar to 50S ribosomal protein L21, chloroplast precursor (CL21) (CS-L7) (GB:P24613); contains InterPro domain Ribosomal protein L21; (InterPro:IPR001787) -0.173006780846889 -2.55268789096513 0.0327508239961431 1 3.24926142418560 22.4385530950451 -0.173006780846889 0.00562922445753035
AT3G11590_at 5.03709900161519 5.38116351145044 5.30688494882216 4.82925804836124 5.17993826412448 5.58964635227388 5.1536931089385 5.17933195126006 4.88307716368658 5.04384425735005 5.56370510759802 6.36134592294505 5.04975132163637 5.31415766148478 5.75142833087625 5.59130123665246 5.30995315011971 5.51062583802363 5.18617043561945 0.209356074347123 0.21669906818941 0.209958545678649 0.215751335631338 0.210250308914755 0.212356082519626 0.208878248261855 0.210124123342692 0.215241477982329 0.215243439093031 0.216860089594226 0.213188171463741 0.212723061592307 0.217528875963234 0.208878248261855 0.211170656771487 0.210956419146237 0.217636219790284 0.211334775798702 3 3 + 3662978 3663488 3663235.182 3660383 3663740 + gene protein_coding_gene FALSE TRUE AT3G11590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22310.1); similar to Os04g0382800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052610.1); similar to OSJNBa0072D21.15 [Oryza sativa (japonica cultivar-group)] (GB:CAD40733.2); similar to unnamed protein product; gb|AAF24581.1 gene_id:MBK23.17 strong similarity to unknown protein [Medicago truncatula] (GB:ABE79740.1) 0.278723147847202 2.55251406104687 0.0327598846516689 1 3.24901119408918 10.5042423267153 0.278723147847202 0.124193208569948
AT1G22140_at 9.62708626647907 9.94045635584075 10.3380419779013 10.4542147075898 10.6780593846620 10.2673122862608 10.6082551548047 10.6802846154011 10.7057206174981 10.4755119028968 10.9378576423165 10.5874395290740 10.7882587456283 10.9030840441370 10.5383508989959 10.9191667507605 11.0513730703061 10.6311679399635 10.4393668620311 0.0866694959035691 0.0801934165857264 0.0814030343935982 0.079851324523209 0.0788806596796827 0.0845356888033955 0.0808819433583139 0.0804694795539848 0.0841849422705026 0.0788806596796827 0.0788806596796827 0.0788806596796827 0.0793192124584748 0.0806031274600232 0.086201561818456 0.0788806596796827 0.0788910192079289 0.08272373979329 0.0788806596796827 1 1 - 7815147 7815541 7815305.273 7814754 7815620 - gene protein_coding_gene FALSE TRUE AT1G22140.1|AT1G22140.2 |unknown protein contains domain ZINC FINGER-CONTAINING PROTEIN P48ZNF (PTHR12681)| 0.237387012238909 2.55217557023551 0.0327775353111659 1 3.24852393449669 20.9916074045123 0.237387012238909 0.0924828374814422
AT2G46180_at 7.52365839686893 7.77904474968907 7.44283133858581 7.34721874975313 7.91227942739106 7.4294161972779 7.69139235349739 7.7047239629358 7.75012407989959 7.8727964615356 7.52511836716857 8.00770746440622 7.40317206610954 7.3232150109454 7.50429137459365 7.63010397454209 6.7957159297525 7.46653343646542 7.77275219401137 0.201491448901868 0.193360102839668 0.193615786685722 0.200911531138536 0.203014679908933 0.206065170395737 0.209119272201607 0.199284115417748 0.200789702401624 0.198007412958808 0.206653279808973 0.199507283868671 0.197425866579370 0.195384546248778 0.202258514804423 0.193360102839668 0.228253267322298 0.202831328079621 0.199852457149585 2 2 - 18974555 18975774 18974951.889 18974432 18978423 - gene protein_coding_gene FALSE TRUE AT2G46180.1 intracellular protein transport protein USO1-related similar to intracellular protein transport protein USO1-related [Arabidopsis thaliana] (TAIR:AT3G61570.1); similar to hypothetical protein DDBDRAFT_0216773 [Dictyostelium discoideum AX4] (GB:XP_646811.1); similar to Os08g0386900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061711.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.241671906490038 -2.55216780473809 0.032777940357098 1 3.24851275604190 15.2315905377399 -0.241671906490038 0.095994435498038
AT3G59950_at 6.7076963489605 6.42572279000321 6.6236374422586 6.31143577149376 6.78918427888537 6.90318070862969 7.28110797938642 6.99666839617724 6.35346806280113 6.79070447245271 6.53257567019723 6.2631289693609 6.78533537301167 6.41245799980239 6.31793621301097 6.46873203245245 6.64782505366748 6.4417994958117 7.12573913460548 0.198515271181087 0.186496634806549 0.189990073823812 0.195668173877994 0.185932115853703 0.189325252868515 0.187575554286901 0.187673929402833 0.205158510384775 0.181715729293929 0.183745254286167 0.190683606508205 0.195805628791760 0.198826959489994 0.19197834948164 0.182161897320571 0.198805516209776 0.18582669350678 0.186146741566234 3 3|0 -|/ 22155547 22156656 22156098.778 22155257 22158668 - gene protein_coding_gene FALSE TRUE AT3G59950.1|AT3G59950.2 autophagy 4b (APG4b) similar to autophagy 4a (APG4a) [Arabidopsis thaliana] (TAIR:AT2G44140.1); similar to Os03g0391000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050279.1); similar to Os04g0682000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054293.1); similar to putative autophagy protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAR87271.1); contains InterPro domain Peptidase C54; (InterPro:IPR005078)|similar to autophagy 4a (APG4a) [Arabidopsis thaliana] (TAIR:AT2G44140.1); similar to H0124B04.9 [Oryza sativa (indica cultivar-group)] (GB:CAJ86292.1); contains InterPro domain Peptidase C54; (InterPro:IPR005078) -0.234426350343540 -2.55148906971033 0.0328133625195769 1 3.24753571967525 13.3750097515747 -0.234426350343540 0.090068266748143
AT2G43510_at 8.18468293102588 8.13068800666878 7.97404999909071 8.15920054711068 7.45072221162654 6.23911083807206 5.22939968616546 4.75634209412635 2.78198441293483 7.53573343227947 2.68897944047638 2.31722680932259 1.87159372147466 2.6730058235712 2.60879680159265 2.03698330529607 3.24233574192777 2.42594102837349 2.39042548886032 0.322678221607871 0.3173302907813 0.336046348818999 0.326464059993490 0.318671959839879 0.339897123891054 0.323013933169762 0.31712531275855 0.327610673783827 0.321008395985835 0.31712531275855 0.323989097729071 0.333399809280837 0.328237969868121 0.321251368235475 0.319626901222656 0.329546912912058 0.326701594643303 0.320676968321782 2 2|0 +|/ 18074289 18074672 18074536.5 18074249 18074879 + gene protein_coding_gene FALSE TRUE AT2G43510.1 ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1) Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. Identical to Trypsin inhibitor ATTI-2 precursor (diDi 4T-1) (ATTp) [Arabidopsis Thaliana] (GB:Q42328;GB:O22865); similar to trypsin inhibitor, putative [Arabidopsis thaliana] (TAIR:AT2G43535.1); similar to rapeseed putative trypsin inhibitor 1 [Brassica napus] (GB:CAJ44305.1); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.436223612271072 -2.55117560123259 0.0328297350283655 1 3.24708448611141 10.3751023452504 -0.436223612271072 0.227550878621647
AT1G05385_at 6.98273617745517 7.28514585328426 6.47799621155098 6.45201815958597 7.73380324842154 6.7203672593853 7.92724043595017 7.93279398380363 7.79991640134353 7.85600202772405 8.11459578606934 8.01499192752014 7.80056232151073 7.99323121605482 7.8480515619499 8.07674091575124 6.93467551938845 7.41409800583673 7.80355747992421 0.177472706658678 0.171207613052128 0.185890546325626 0.178392026031195 0.175314797658007 0.184455862677782 0.182669431918899 0.174908668322768 0.184735759923523 0.175967349400126 0.177794458861163 0.179334369367793 0.177190657753772 0.184849500258635 0.176716110795095 0.173762494376099 0.188775715142460 0.179491720978167 0.180469966930519 1 1|0 -|/ 1582808 1583612 1583193.4 1582670 1583717 - gene protein_coding_gene FALSE TRUE AT1G05385.1 photosystem II 11 kDa protein-related similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK71543.1) -0.365569894562224 -2.55072342801598 0.0328533666552341 1 3.24643359241138 14.9862345210583 -0.365569894562224 0.183079224194417
AT4G01310_at 11.0058457665919 10.9536251764034 10.3488569297594 10.2553811545275 10.8391032163964 10.6921868785761 10.9857040729925 11.052453759887 10.8665011395188 11.2740330825510 11.2533501799720 11.6136129353818 11.0634384268819 11.1761958305200 11.7846263369666 11.2583658519267 10.7165143292006 11.0052192226183 11.2589242018974 0.077480942309728 0.075633469694579 0.0771165900403689 0.0772956349147125 0.0796952079139395 0.07765491913646 0.0778210824837941 0.0777790111895764 0.0940026233482539 0.0781042214046549 0.077304332788944 0.075633469694579 0.0769971703560988 0.0826993164642412 0.0788149036602368 0.0782152412731771 0.092894640859825 0.0784312645236979 0.0759261853237505 4 4|0 -|/ 544221 545266 544634.7 543970 545547 - gene protein_coding_gene FALSE TRUE AT4G01310.1 ribosomal protein L5 family protein Identical to 50S ribosomal protein L5, chloroplast precursor (RPL5) [Arabidopsis Thaliana] (GB:O04603); similar to 50S ribosomal protein L5, chloroplast (GB:P82192); contains InterPro domain Ribosomal protein L5; (InterPro:IPR002132); contains InterPro domain Mitochondrial ribosomal protein L5; (InterPro:IPR003236) -0.182381283979718 -2.55055756117602 0.0328620395527608 1 3.24619483165268 21.9501787179781 -0.182381283979718 0.0335139654721008
AT3G55920_at 7.03517666450807 6.4617194307941 6.03869191039983 5.32740859057394 6.42023744536934 5.67379875362434 6.83580820346981 6.34694004232212 6.54274530774978 6.4366604262198 6.5745629361741 6.95617036796593 5.96283753143726 6.53761870077487 6.9709532746587 6.11911753700276 5.99702084093202 6.40539526818071 6.47916705227648 0.253461124118572 0.251706804373256 0.253604737748429 0.265315562045506 0.263118965283101 0.257305069531459 0.258050443424514 0.251706804373256 0.272901204676229 0.259594599285704 0.257081067458329 0.268827162856007 0.251706804373256 0.259617891402339 0.252932826053068 0.255569563027735 0.258498141607810 0.257867930396720 0.257948971607672 3 3|0 -|/ 20754573 20755824 20755047.667 20754422 20756053 - gene protein_coding_gene FALSE TRUE AT3G55920.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to CYP5 (cyclophilin 5), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G29960.1); similar to putative cyclophilin [Lycopersicon esculentum] (GB:AAW22880.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.425304140944774 -2.54901579067250 0.0329427669409171 1 3.24397552180501 12.7307978730774 -0.425304140944774 0.221005099476966
AT1G35560_at 5.26123650276291 5.14102663309601 6.08239219249198 6.18870026203639 6.21273418372815 6.05600239191958 6.63443605813666 6.73398137532301 5.83112277749922 6.64307302341177 5.21707823024196 5.12285020001771 5.9622279526976 5.79771186168446 4.8102484303406 6.42530303113475 6.39202404900847 5.42313046333269 6.16174967362962 0.235575205896866 0.238552298368705 0.239923924332643 0.236601069652456 0.234282902451016 0.242415000057793 0.242407453041922 0.239327029953458 0.244020034591256 0.233406139249725 0.241203724640534 0.233406139249725 0.242398696175178 0.233406139249725 0.259644385158293 0.233825005699402 0.239682484048057 0.247523111362622 0.236784394392650 1 1 - 13116155 13116647 13116446.636 13115804 13117213 - gene protein_coding_gene FALSE TRUE AT1G35560.1 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.187936466162607 -2.54872141745020 0.0329582031495309 1 3.24355179015978 11.9667155010139 -0.187936466162607 0.0424693009915737
AT3G57470_at 6.98647106592753 7.0861768181376 6.40517640796026 6.24221190238431 7.67932654707324 7.03751788959649 6.85357975447271 6.16237825078864 6.31467181050351 6.28494096280888 7.0742246691389 7.66053794284695 7.09223180183518 6.73516462507288 7.22476392244414 7.35181007611867 6.48764941593193 7.11878284560586 6.8477676532138 0.208390868330399 0.204365452961745 0.200329872987174 0.207208564838120 0.198465391797418 0.205738577651479 0.201097421808692 0.192726926141205 0.219145768049588 0.204495427283284 0.200907926709670 0.194071882186388 0.197416881325775 0.213842017727191 0.200911987024953 0.193170486027892 0.219342950651707 0.20097529721714 0.194720757216403 3 3|0 -|/ 21281093 21281855 21281455.111 21280238 21286907 - gene protein_coding_gene FALSE TRUE AT3G57470.1 peptidase M16 family protein / insulinase family protein similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT2G41790.1); similar to putative insulin degrading enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAD52843.1); similar to insulin degrading enzyme [Solanum lycopersicum] (GB:CAC67408.1); similar to putative insulin degrading enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAC79699.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.339796117310437 2.54776925982031 0.0330081820341848 1 3.24218123160582 13.5944077318174 0.339796117310437 0.166544461921952
AT3G57000_at 6.45966866826083 6.50071304033425 5.71415269244148 6.37540102421469 6.3018314125181 6.11431318027855 6.50102344439062 6.8475193708288 4.85134240541693 5.07212580548132 4.65705493090195 5.21777915411198 4.66049657224656 4.49940753248047 5.44656067903936 5.34846531413432 4.70848360548527 5.18128681383461 5.36511434738905 0.237096581668673 0.236094034425868 0.238824018631603 0.240318668051378 0.242401924104699 0.2513220448859 0.243413113939252 0.239624150762386 0.238561385801109 0.241528597854092 0.236094034425868 0.238116388446585 0.236094034425868 0.241762695968997 0.236094034425868 0.236094034425868 0.240487932091854 0.236094034425868 0.240889740534382 3 3|0 +|/ 21103996 21105026 21104422.857 21103247 21105272 + gene protein_coding_gene FALSE TRUE AT3G57000.1 nucleolar essential protein-related similar to Os02g0290400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046590.1); similar to Protein required for 18S rRNA maturation and 40S ribosome biogenesis (ISS) [Ostreococcus tauri] (GB:CAL58628.1); contains InterPro domain Suppressor Mra1; (InterPro:IPR005304) -0.291029457203435 -2.54738397701383 0.0330284273413262 1 3.24162665160211 11.3823958598460 -0.291029457203435 0.133393214537853
AT2G44210_at 10.2228981633320 10.4978645704424 10.0677158663291 10.2736486334647 10.5374022962884 10.3321604289489 11.0951575797171 11.1849424665378 11.4878810719920 11.2090799012656 11.3508832789667 11.4580609091659 11.1252229874231 11.2855396046956 11.3169805036472 11.2406940248214 10.6710075650550 11.6979250987875 11.04145475183 0.08223535782317 0.0792621697263265 0.0835773315706805 0.0850378701763662 0.0798080492296435 0.0818585756008268 0.078828357905019 0.0790948908980094 0.0835911501820615 0.079934910881168 0.0828594265579594 0.0784819533992113 0.0784397205780871 0.0858467085681763 0.0841884247120925 0.0797858088807598 0.0895635533824889 0.0807845245161691 0.0816843154424445 2 0|2 /|+ 18288927 18289617 18289240.1 18287699 18289952 + gene protein_coding_gene FALSE TRUE AT2G44210.1|AT2G44210.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55360.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13510.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55360.1); similar to Protein of unknown function DUF239, plant [Medicago truncatula] (GB:ABE82132.1); contains InterPro domain Protein of unknown function DUF239, plant; (InterPro:IPR004314) -0.212666608604222 -2.54600608731983 0.03310093351579 1 3.23964332848135 21.7836876614323 -0.212666608604222 0.070973593346073
AT3G01920_at 8.76730462957294 8.49007893871937 8.88821118434281 8.58168580313241 8.81135141576643 8.56835398410069 9.28471611367306 9.16102477087519 7.49488173013756 8.35783776198152 8.8986133303212 8.8822954947193 8.45193029858317 8.47218673819997 8.8124801471893 9.25478621334192 8.22856340069682 8.22789858143364 8.09529739583135 0.242519349337462 0.228418376962842 0.230042071107073 0.228418376962842 0.228418376962842 0.246631649075088 0.234793926415148 0.228418376962842 0.256445029256189 0.242028818768491 0.230509225623513 0.228418376962842 0.228850484094302 0.243244958173928 0.234295587854929 0.228418376962842 0.270392458771486 0.245510392077051 0.240654655525413 3 0|3 /|+ 317869 318636 318311.429 317439 319128 + gene protein_coding_gene FALSE TRUE AT3G01920.1 yrdC family protein similar to yrdC protein-related [Arabidopsis thaliana] (TAIR:AT5G60590.2); similar to RNA binding/translational regulation protein of the SUA5 family (ISS) [Ostreococcus tauri] (GB:CAL55017.1); similar to Os08g0531300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062333.1); contains InterPro domain Sua5/YciO/YrdC/YwlC; (InterPro:IPR004388); contains InterPro domain SUA5/yciO/yrdC, N-terminal; (InterPro:IPR006070) 0.228770731601319 2.54586387675302 0.0331084259534141 1 3.2394386340336 17.1372241407949 0.228770731601319 0.0856855126860342
AT3G52040_at 5.43414395791387 5.62223403987952 5.48439463264424 5.71426885349908 5.1984982462097 4.62173691075808 5.29405052485178 5.86054024654646 4.8069814712504 4.9194751180621 4.71556211814083 4.90832823343555 4.59995416375229 4.43326967531367 5.08842863686862 4.32909537583238 4.43872674674951 4.0869417456241 4.98505602801509 0.207584093899838 0.210694299284296 0.208974713187562 0.212895174777029 0.215396605992594 0.216527802654411 0.206053282246248 0.204025400468265 0.207306504410497 0.211656421575018 0.204222081052525 0.201597463504244 0.210895587533183 0.204790040370213 0.207312792318953 0.202486876768532 0.212709104534238 0.203543009620468 0.20510903350827 3 3|0 -|/ 19315349 19315745 19315502.333 19315148 19315839 - gene protein_coding_gene FALSE TRUE AT3G52040.1 similar to unknown [Hyacinthus orientalis] (GB:AAS20983.1) -0.313408366832354 -2.54561918457843 0.0331213216988917 1 3.23908643104397 10.1431713645747 -0.313408366832354 0.149046616124883
AT4G12030_at 9.65026688582036 9.693672867407 8.9334830155475 8.74335781722608 9.66806550233112 9.1194888388576 9.65375223392014 9.63411631926623 7.04334735341032 9.37774529225987 9.5397458046894 9.49642006216196 9.36703830346709 9.7206058604538 8.53484427357127 8.99135555872878 9.21025565442156 9.5619853607694 8.3797094868914 0.176378461572128 0.172904851213967 0.187645955090568 0.166136509515395 0.172777338928033 0.180532602272779 0.184827286178633 0.168145605246706 0.202707548612153 0.172134980222847 0.163294932153816 0.167292302403711 0.165954817576625 0.175845381072595 0.172536244299657 0.172224058040285 0.176718041911041 0.183217883378375 0.172138617636708 4 4|0 +|/ 7211975 7212659 7212282.4 7210912 7212986 + gene protein_coding_gene FALSE TRUE AT4G12030.1|AT4G12030.2 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT4G22840.1); similar to Os02g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046843.1); similar to Os09g0520600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063701.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) 0.246997016241424 2.54511765617048 0.0331477690686092 1 3.23836454923334 18.1718831370321 0.246997016241424 0.100811374295643
AT3G25470_at 9.41689126503432 9.48189274263308 9.65693186291105 9.55869429421118 9.79327521001542 9.46180568764203 9.6583036278463 9.46565786961312 9.2919425407936 9.57684491917082 9.77224781173688 9.75735937284424 9.7497983353318 9.58914404761108 9.85370817963757 9.76314720123006 9.88524924300865 9.72632979936188 9.48781741746934 0.0955449025586767 0.0915937300357134 0.093752826728724 0.0938645416988828 0.0961234196881711 0.0979895184063372 0.098155394905839 0.0933281550115547 0.0973965571989048 0.0968369486031268 0.0969998448907882 0.0936559063733653 0.0929734922547372 0.093221082652286 0.0915937300357134 0.0915937300357134 0.0982747005349928 0.0970104597166413 0.0987924310291643 3 3|0 +|/ 9235227 9236206 9235671.3 9234156 9236450 + gene protein_coding_gene FALSE TRUE AT3G25470.1 bacterial hemolysin-related similar to Os11g0247400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067614.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53423.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Ribosomal RNA methyltransferase RrmJ/FtsJ; (InterPro:IPR002877); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Hemolysin A; (InterPro:IPR004538) 0.210955880223616 2.54468810044855 0.0331704380270464 1 3.23774626657547 19.1688438823166 0.210955880223616 0.0694077027059884
AT2G43210_at 6.5202362639347 7.13562071830116 6.63316072628806 6.80059178680004 8.11452942105524 7.03424553722395 6.30418865282721 5.86663804373607 6.39474851896617 5.93673134900174 6.42586702035179 6.51553119980128 6.54596743136134 6.75615577360411 6.12075706589904 6.59284795773024 6.29524749733323 6.52339999323314 6.51903357116575 0.219739460175509 0.220835059315303 0.231831776982440 0.217870961101869 0.223498799077765 0.229954119534611 0.223380560875672 0.233582785609163 0.250074095181916 0.221154659458328 0.216572440798495 0.215001475419676 0.215001475419676 0.226388766502813 0.240103548348596 0.219435261829427 0.221441844405043 0.224661840660404 0.216682958297325 2 2 + 17969824 17970576 17970253.636 17967777 17970804 + gene protein_coding_gene FALSE TRUE AT2G43210.1|AT2G43210.2 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to UBX domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96153.1); similar to Os11g0293900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067713.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.438714105422544 2.54337470145394 0.0332398472822103 1 3.23585584545993 13.1788895048335 0.438714105422544 0.229921535566572
AT1G25570_at 6.1493984741686 6.35851941431799 5.80190781580206 5.68124615764858 6.24433849918236 5.94216689885992 6.05286424439668 6.30692154159734 6.18807588031404 6.1864552374025 6.48164955926908 6.54508003923762 5.93060378735601 6.40292103167306 5.80250226255414 6.04952461989587 5.65432263216524 6.22697871811686 6.46999090428187 0.209887473713669 0.215087067774683 0.231589509941615 0.217123315504015 0.210387600806562 0.227055602138476 0.209887473713669 0.219380942216917 0.214056233059328 0.228690787860232 0.213630691141996 0.210500226929939 0.223042156163508 0.215891947142229 0.214107261557643 0.209887473713669 0.222752575308877 0.213304635472026 0.222807675289026 1 1 - 8992171 8993996 8992969.4 8991813 8995469 - gene protein_coding_gene FALSE TRUE AT1G25570.1 leucine-rich repeat protein-related similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G28340.1); similar to Os07g0501800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059721.1); similar to Os01g0140400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041980.1); similar to leucine-rich repeat family protein [Lycopersicon esculentum] (GB:ABH07898.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.222160292564788 -2.54293406542425 0.0332631664506293 1 3.23522163102632 12.2762729667215 -0.222160292564788 0.0800821726592613
AT1G73920_at 10.1536623637511 9.97819042886861 10.4154201715469 10.3740776977678 10.6408742637033 10.4788654352531 10.5488223603752 10.4458787002557 9.90966926369825 10.6417278770669 10.5658331551288 10.5359318545708 10.5312827947777 10.5866671186697 10.1619443822356 10.4817439174717 10.8372481939597 10.5507227174979 10.4918541620408 0.0728469840780845 0.0713525800040042 0.0727985266674851 0.0751510195037146 0.071361428617836 0.0719311412154642 0.0713525800040042 0.0733922929738141 0.087303774360209 0.0748370451458796 0.0784316009680799 0.0729844064801666 0.0743101043162881 0.076394552847078 0.0794347745906134 0.071725061018086 0.0732585036811615 0.0793666962043565 0.0740439453827335 1 1 + 27797801 27798245 27798002.636 27794537 27798575 + gene protein_coding_gene FALSE TRUE AT1G73920.1|AT1G73920.2 lipase family protein similar to lipase family protein [Arabidopsis thaliana] (TAIR:AT1G18460.1); similar to Esterase/lipase/thioesterase; AB-hydrolase associated lipase re (GB:ABE91610.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain AB-hydrolase associated lipase region; (InterPro:IPR006693) 0.189671130637746 2.54202723131008 0.0333112095901542 1 3.23391642373957 20.8190600282190 0.189671130637746 0.0455708686824162
AT3G07550_at 5.09459162820623 4.46593466474005 4.14593713563551 4.1280944196297 4.80476718597477 4.93253056341582 4.53827891705706 5.03657883163699 4.84665101807887 5.25723891797067 5.05665456735726 4.50077832225151 4.88795181212464 4.76196546582503 4.40917353877768 4.66484856272237 4.70090926095342 4.5469148573248 4.92972226263798 0.214058123440942 0.213435278797454 0.219494112154116 0.216111941886925 0.210143925886943 0.216252824526258 0.213477056882885 0.218628034248172 0.227153144846559 0.219270464982602 0.211361171274281 0.210143925886943 0.225109712468847 0.217970151063943 0.214801532041465 0.210353807819052 0.225190541390456 0.210143925886943 0.216779050571642 3 3 + 2410562 2411012 2410772.273 2409483 2411300 + gene protein_coding_gene FALSE TRUE AT3G07550.1|AT3G07550.2 F-box family protein (FBL12) similar to protein binding [Arabidopsis thaliana] (TAIR:AT5G23340.1); similar to Os11g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067651.1); similar to F-box-like protein [Musa acuminata] (GB:AAR96013.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.300534101029107 -2.54056548949027 0.0333887987723714 1 3.23181257575881 9.49451597561015 -0.300534101029107 0.14060669876946
AT2G32440_at 6.52523390126657 6.2424238072151 5.45570112826944 4.87453234309934 6.76757492526711 5.78405824913286 6.84283470521713 6.3099466634595 5.56758673961533 6.78896696113111 6.18747967509508 6.3888030641224 6.13071019227102 6.25685809715694 6.07597072006292 6.37911811643751 6.26599280829732 5.82341450449925 6.49771360549577 0.220091239407811 0.224227743814888 0.221478208330053 0.221567881522341 0.220091239407811 0.225929641968116 0.220091239407811 0.224484406629065 0.224967542897155 0.220091239407811 0.220091239407811 0.224504332102039 0.224939311344732 0.223641394437892 0.229294967182066 0.220091239407811 0.228884594964624 0.227115763778552 0.246087051169501 2 2|0 +|/ 13783849 13784792 13784422.7 13782656 13785079 + gene protein_coding_gene FALSE TRUE AT2G32440.1 KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2); oxygen binding ent-kaurenoic acid hydroxylase (KAO2) Identical to Ent-kaurenoic acid oxidase 2 (EC 1.14.13.79) (AtKAO2) (Cytochrome P450 88A4) (KAO2) [Arabidopsis Thaliana] (GB:Q9C5Y2;GB:Q9ZV72); similar to CYP88A3 (ENT-KAURENOIC ACID HYDROXYLASE 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G05160.1); similar to ent-kaurenoic acid oxidase [Cucurbita maxima] (GB:AAG41777.1); similar to ent-kaurenoic acid oxidase [Pisum sativum] (GB:AAO23064.1); similar to ent-kaurenoic acid oxidase [Pisum sativum] (GB:AAO23063.1); contains InterPro domain B-class P450; (InterPro:IPR002397); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.427927739675993 -2.54008702254583 0.0334142354086190 1 3.23112394085596 12.3369377983610 -0.427927739675993 0.223569843495512
AT4G12230_at 8.01357815436018 7.72467682481272 7.78632804142158 7.86633276983888 8.37463772797857 8.11208211036706 8.0477342771678 8.03999622983334 7.82790801990864 7.48239483779598 8.01502687659653 7.8437504946109 8.06258175387152 8.04410729046469 7.88042566993984 7.97868003220485 8.05140511764853 7.73911890242723 7.51988987102743 0.139423565202791 0.136379173488966 0.140121579441899 0.137566579002742 0.141219700186143 0.152348914230815 0.146928115828260 0.136677835375053 0.146961016304998 0.141029843558845 0.136234573814047 0.133229524665268 0.133229524665268 0.137351999265228 0.139748914393933 0.133229524665268 0.137624699558524 0.142080969240368 0.137540056106744 4 4|0 +|/ 7286394 7287181 7286886.8 7284513 7287536 + gene protein_coding_gene FALSE TRUE AT4G12230.1 esterase/lipase/thioesterase family protein similar to Os10g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064230.1); similar to esterase/lipase/thioesterase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB46874.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.210085782583922 2.53946841591378 0.0334471512750053 1 3.23023361722985 15.7766463970381 0.210085782583922 0.068974835797465
AT4G01650_at 4.84628188441804 4.77600965464577 5.28899517523966 4.87796405770649 5.09675973587631 5.15616267613139 5.3224971511557 5.16759902052115 4.60222570284821 4.57053653963707 5.17985164916877 4.86279710051276 5.48578791004411 5.09491503852722 4.71613291562557 5.10774951719005 5.25364482631039 4.66123954951372 4.87852671834337 0.256685346904038 0.254945433041997 0.260225194859536 0.265270073057436 0.261236292759959 0.265237338701363 0.261900189210966 0.261280711022687 0.292123486032295 0.26548899214337 0.265151514703742 0.259382916125081 0.254945433041997 0.266407221142093 0.277060734685125 0.254945433041997 0.263461762298324 0.258500329288730 0.260455267275166 4 4|0 -|/ 704664 705511 705139.556 704407 706965 - gene protein_coding_gene FALSE TRUE AT4G01650.1|AT4G01650.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08720.1); similar to COG2867: Oligoketide cyclase/lipid transport protein [Nostoc punctiforme PCC 73102] (GB:ZP_00109164.1); similar to Os01g0971700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045536.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) 0.219187654985994 2.53930800928150 0.0334556918076890 1 3.2300027549603 9.93104756961404 0.219187654985994 0.0776641309631406
AT2G35100_at 5.17154411272328 5.51784572629496 5.26485507999063 5.17297557078828 5.65386090843178 5.65231024077312 4.91750994813739 5.39236760022906 4.99525042322539 4.72592665590867 5.22854820007084 4.9080248853938 4.98057691242696 5.2514189833636 5.06829355364234 5.03588482716447 5.38332201229906 5.44962918414902 4.83273766799021 0.223075458588096 0.221391275430545 0.224193113628604 0.226244958620691 0.221635656354087 0.222762062678707 0.218546931546166 0.218310794354712 0.23741244023045 0.220838549520699 0.220145533476688 0.231302839919358 0.227599836080476 0.223192195227925 0.218438966840727 0.221927133111655 0.222076799737861 0.223072298490196 0.2218506540321 2 2 - 14800949 14801679 14801336.091 14800730 14802708 - gene protein_coding_gene FALSE TRUE AT2G35100.1 ARAD1 (ARABINAN DEFICIENT 1); catalytic Putative glycosyltransferase, similar to other CAZy Family 47 proteins. The protein is predicted to be a type 2 membrane protein with a signal anchor and is predicted to be targeted to the secretory pathway and to have a single transmembrane helix near the N terminus; hence, the protein has the features expected for a type II membrane protein targeted to the Golgi vesicles. The gene was shown to be expressed in all tissues but particularly in vascular tissues of leaves and stems. similar to ARAD2 (ARABINAN DEFICIENT 2), catalytic [Arabidopsis thaliana] (TAIR:AT5G44930.2); similar to Exostosin-like [Medicago truncatula] (GB:ABC75371.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.249045503627725 2.53849737371545 0.0334988861913203 1 3.22883607181336 10.3501672661820 0.249045503627725 0.102943359351540
AFFX-r2-P1-cre-5_at 12.9513773295377 13.2934387974376 13.4738496590209 13.3635309363190 13.2045957123623 13.0839873579990 13.213246046307 13.3774931323214 0.224527353908237 0.250713694255623 0.436164489855419 0.645665574986355 0.992014481121235 0.318909156826148 0.377417134463877 0.590250573315078 0.665285626399825 0.605652686272873 0.203843628206107 0.234436887748784 0.227714088317140 0.232940111288573 0.231760569441407 0.22711939280336 0.238419220629593 0.22811541257386 0.228293167113096 0.23721951864345 0.237614766489898 0.232304217996587 0.231121127188352 0.238557643158038 0.232839762710566 0.241784053529119 0.233650510782819 0.237250449542914 0.239223682459792 0.230358600898374 NA NA NA NA NA FALSE FALSE 0.212580248319723 2.53849586034981 0.033498966883037 1 3.22883389376103 13.6478306335106 0.212580248319723 0.0714989639945134
AT3G03570_at 5.80573166934407 6.40891484017619 5.96662736033 6.1612335716911 6.34380472158636 6.33075607728531 5.21215117407623 5.59683073259945 4.88512277855495 4.63794017815117 4.83972227037767 5.16743336928355 5.0515111077318 5.01407330493433 4.72982951488164 4.8768376424533 5.13922200692504 5.0036784679053 5.04869612724515 0.209716533405400 0.206577113165403 0.218382357181503 0.210733916473944 0.214433210693242 0.217792279481735 0.214648374107223 0.210385886702151 0.219959890465697 0.209981012466361 0.205412853152481 0.205412853152481 0.205412853152481 0.212699075566356 0.209861566626612 0.20881019494494 0.213862826137577 0.209718477220332 0.216905755988567 3 3 + 859344 860016 859699.091 856883 860476 + gene protein_coding_gene FALSE TRUE AT3G03570.1 similar to signal transducer [Arabidopsis thaliana] (TAIR:AT4G40050.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54686.1); contains domain FAMILY NOT NAMED (PTHR21243); contains domain SUBFAMILY NOT NAMED (PTHR21243:SF2) 0.282616880626014 2.53589600687736 0.0336378796807832 1 3.22509223538321 10.8957770126588 0.282616880626014 0.128323288298701
AT3G17510_at 10.0417756654738 10.2858911487016 10.4881148884417 10.5003895980842 10.9083679421534 10.7069031344788 11.2216749389984 11.2358579887761 10.6498961291358 11.1624357341733 10.5503810862510 10.6820149347741 10.8692745415916 10.6233710924899 10.3162848102267 11.0102158101755 11.0014213351925 10.5854018316789 11.3455354627482 0.0940578234609091 0.091185880828908 0.091185880828908 0.091185880828908 0.0934805108415876 0.091185880828908 0.0953197805680674 0.0922847709482206 0.102100508082558 0.091185880828908 0.0941767756057068 0.091185880828908 0.0915569511595053 0.0913825573144271 0.0982602445092843 0.091834594257304 0.0967189657620166 0.0984428457606512 0.0914364839960838 3 3 - 5989324 5990267 5989895.455 5988997 5992918 - gene protein_coding_gene FALSE TRUE AT3G17510.1|AT3G17510.2 CIPK1 (CBL-INTERACTING PROTEIN KINASE 1); kinase Encodes a CBL-interacting protein kinase. Specifically interacts with ECT1 and ECT2. Identical to CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (SOS2- like protein kinase PKS13) (SNF1-related kinase 3.16) (CIPK1) [Arabidopsis Thaliana] (GB:Q8RWC9;GB:Q9FUK2;GB:Q9LUP6); similar to CIPK17 (CIPK17), kinase [Arabidopsis thaliana] (TAIR:AT1G48260.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to CBL-interacting serine/threonine-protein kinase 1 (EC 2.7.11.1) (SOS2- like protein kinase PKS13) (SNF1-related kinase 3.16) (CIPK1) [Arabidopsis Thaliana] (GB:Q8RWC9;GB:Q9FUK2;GB:Q9LUP6); similar to CIPK17 (CIPK17), kinase [Arabidopsis thaliana] (TAIR:AT1G48260.1); similar to CBL-interacting protein kinase 1 [Populus trichocarpa] (GB:ABJ91209.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.19659140320974 -2.53543263268603 0.0336626992395777 1 3.22442537308411 21.5523309742968 -0.19659140320974 0.0548701367133214
AT1G69830_at 10.2891622083491 10.3452905610273 9.54402260896417 9.71553058975548 10.2354779881522 9.88202292688897 10.0505992791833 9.92033688302835 9.30429709861481 9.72615518453713 10.2763970328513 10.4165088446183 10.2703879116229 10.2855828328211 10.3200352936505 10.0926421971022 10.0830627544673 10.2779194976257 9.52916920032252 0.106052473531501 0.101141094146605 0.109142862278413 0.105971648840171 0.113390418838651 0.109769892572061 0.106570603063126 0.099722153527512 0.126366760905017 0.102972274536113 0.103416071630173 0.103485802243136 0.099926447400739 0.108428882356173 0.101340461339573 0.101927419588838 0.110299781694622 0.109171730500984 0.101291444457060 1 1|0 -|/ 26292218 26292976 26292569 26291944 26296716 - gene protein_coding_gene FALSE TRUE AT1G69830.1 AMY3/ATAMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase Encodes a plastid-localized α-amylase. Expression is reduced in the SEX4 mutant. Loss of function mutations show normal diurnal pattern of starch accumulation/degradation. Expression follows circadian rhythms. similar to AMY2/ATAMY2 (ALPHA-AMYLASE-LIKE 2), alpha-amylase [Arabidopsis thaliana] (TAIR:AT1G76130.1); similar to Os01g0715400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044062.1); similar to plastid alpha-amylase [Actinidia chinensis] (GB:AAX33233.1); similar to plastid alpha-amylase [Malus x domestica] (GB:AAX33231.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Alpha-amylase beta-sheet, C-terminal; (InterPro:IPR012850); contains InterPro domain Glycoside hydrolase family 13; (InterPro:IPR006046) 0.212929756656648 2.53299194175895 0.0337937346754663 1 3.22091295239144 19.8841508173785 0.212929756656648 0.072283040019488
AT2G14120_at 7.16511594803418 7.26097522703625 6.93453161405039 7.03739264038942 7.30616919603496 7.38936405711743 6.63810674643783 6.40515672866573 5.92956582017962 6.56182604166670 6.30063500949138 6.51216527057524 6.03451066670271 6.40011294238676 6.2716101222317 6.5581710394884 6.58836327800006 5.89601456041543 6.2171911191126 0.21140275671116 0.211456426847937 0.219229504545831 0.216768525723569 0.209637562458260 0.213873599916167 0.209637562458260 0.217016586679997 0.231958908342668 0.209637562458260 0.209874891882074 0.209637562458260 0.215223737799497 0.211649891712062 0.217286507688770 0.213548511698634 0.217955181000044 0.214622464973852 0.211403695080534 2 0|2 /|- 5961336 5962260 5961751.125 5960278 5967205 - gene protein_coding_gene FALSE TRUE AT2G14120.1|AT2G14120.2 dynamin-like protein 2b (ADL2b) Identical to Dynamin-related protein 3B (Dynamin-like protein 2b) (DRP3B) [Arabidopsis Thaliana] (GB:Q8LFT2;GB:Q8LPH8;GB:Q8S8A4;GB:Q8S943;GB:Q9SI47); similar to ADL2 (ARABIDOPSIS DYNAMIN-LIKE 2), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT4G33650.1); similar to OSJNBa0072D21.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE02157.2); similar to Dynamin central re (GB:ABD28549.1); similar to Os01g0920400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045220.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.191764624264852 2.53268827242585 0.0338100740087033 1 3.22047594925377 13.2952976137947 0.191764624264852 0.0492389901428373
AT1G24180_at 6.34757661873227 6.95348391162836 6.03384852887222 6.65735088368929 5.97426520510381 5.59489875845918 6.00328925932559 6.69641406736481 5.60829636895665 5.8312166260398 7.13197911731718 7.59063999298158 6.88926126805416 6.59895320590458 7.2036157914852 6.92657927649669 6.63078259948996 6.32528393377223 5.6255138301007 0.266215890340969 0.263863492120103 0.268563549913439 0.266582527668616 0.264324445476768 0.274980290859039 0.265563574395249 0.266263428122343 0.275712669818259 0.263863492120103 0.269796728916591 0.26435670896206 0.263863492120103 0.273521065629452 0.271247498313205 0.263863492120103 0.282817752142219 0.272994185164934 0.270619587450466 1 1|0 -|/ 8560968 8562718 8561943.667 8560519 8563484 - gene protein_coding_gene FALSE TRUE AT1G24180.1 IAR4 (IAA-conjugate-resistant 4); pyruvate dehydrogenase (acetyl-transferring) Arabidopsis thaliana pyruvate dehydrogenase E1a-like subunit. 81% identical to a previously characterized Arabidopsis mitochondrial PDH E1a-subunit, At1g59900 Identical to Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial precursor (EC 1.2.4.1) (PDHE1-A) (IAR4) [Arabidopsis Thaliana] (GB:Q8H1Y0;GB:O48685); similar to AT-E1 ALPHA (pyruvate dehydrogenase complex E1 alpha subunit), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G59900.1); similar to pyruvate dehydrogenase E1 alpha subunit (GB:AAA86507.1); similar to Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial precursor (PDHE1-A) (GB:P52902); similar to pyruvate dehydrogenase [Citrus x paradisi] (GB:AAY86036.1); contains InterPro domain Dehydrogenase, E1 component; (InterPro:IPR001017) 0.394347251461841 2.53165560160247 0.0338656979371377 1 3.21898987493216 12.582880490757 0.394347251461841 0.203309383914486
AT2G31440_at 7.32852066069458 7.82884634437023 7.3644219963617 7.29558931909674 8.10894325367037 7.6192753973354 7.31187479338775 7.74724099356442 7.79615303499282 7.05958455876296 6.47764327861455 6.8387862723423 6.99702884422925 7.08146094180587 6.53917234396503 7.01346798422891 6.18705857315961 6.67007321599901 7.26763206049872 0.184315055247773 0.174917581980325 0.184740087805035 0.175508876203518 0.179116393847001 0.186209330456943 0.177876516677415 0.177287171471588 0.176685849738652 0.172708003799905 0.180356858303533 0.182939288975889 0.183089143480501 0.180897371360911 0.194779419793308 0.176089191098867 0.213469102544358 0.174870687724387 0.172708003799905 2 2|0 -|/ 13406448 13407654 13407057.2 13406386 13408048 - gene protein_coding_gene FALSE TRUE AT2G31440.1 protein binding Identical to Gamma-secretase subunit APH1-like [Arabidopsis Thaliana] (GB:Q8L9G7;GB:Q8VZI0;GB:Q9SIC5); similar to PREDICTED: similar to CG2855-PA [Tribolium castaneum] (GB:XP_966461.1); similar to Os02g0272600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046527.1); contains InterPro domain Aph-1; (InterPro:IPR009294) -0.302966663006645 -2.53008198709814 0.0339506370211055 1 3.21672540204203 14.6256105864158 -0.302966663006645 0.143163602394077
AT1G68160_at 7.02891896440581 7.15473931922835 7.62934249793409 7.2542294969902 7.78872623882696 7.46555516936403 7.12137554340295 6.91849430969031 6.10085751218026 6.63906448713746 6.1334003651336 6.30372996499083 6.56185186461421 6.57460621283432 6.0374929449807 6.61472832744852 6.7878407239524 6.55837962524443 6.60422584421306 0.194552220922665 0.197326446565198 0.201511956531100 0.194098092262133 0.188066271900066 0.195440870273718 0.187580224426251 0.201444999148236 0.205825926914795 0.189200150969645 0.184355645965381 0.186846473273383 0.187706612373352 0.188475822837751 0.189791737161343 0.185028572418482 0.201748113088846 0.191439554027624 0.185126292775440 1 1|0 -|/ 25549837 25551808 25550800.222 25549471 25552557 - gene protein_coding_gene FALSE TRUE AT1G68160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10820.2); similar to OSJNBa0067K08.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE03109.1); similar to H0322F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67770.1); similar to Os02g0631200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047499.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.238517894534957 2.53006761634374 0.0339514137022143 1 3.21670472243475 13.7424492098937 0.238517894534957 0.09512354758797
AT1G66430_at 5.44124707341047 5.12400911973507 2.99437768729961 3.14114463815029 3.78385792614889 2.77815374617544 6.0886567267317 6.0555505002872 3.46688915504234 5.81423894984092 7.11051814129314 8.12364636577368 5.46934273197834 7.0478506517151 7.966948157618 5.83307414597414 4.43299468503486 6.66914127376003 5.14194697381006 0.237479134659015 0.227429613620616 0.233119535844496 0.229178203892094 0.23909295203688 0.235781517824343 0.227429613620616 0.233495546253507 0.240812218913865 0.227429613620616 0.227429613620616 0.230179318530743 0.230896730514139 0.232999373905189 0.227429613620616 0.228542472280272 0.246317361601824 0.238604544771303 0.227429613620616 1 1 + 24783024 24784030 24783379.364 24781934 24784292 + gene protein_coding_gene FALSE TRUE AT1G66430.1 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51830.1); similar to fructokinase 3 [Lycopersicon esculentum] (GB:AAR24912.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.364492264675956 -2.52962198273113 0.0339755072979866 1 3.21606345543193 10.1205652832629 -0.364492264675956 0.184343216434469
AT3G07810_at 6.48899695530649 6.65775801128852 5.91187207096969 6.30225775222994 5.7485777081481 6.40966038452875 5.57269785399539 6.38271390944605 5.63590940824082 6.1704566231419 6.60001155213759 7.02142490126413 6.56582009239574 7.03392493441154 7.01232599018323 6.74921006378545 6.44154346998076 5.89181552987778 5.35147996580266 0.194911301193381 0.184060242177446 0.197831376483059 0.192482729075257 0.188905476637539 0.193879406073601 0.187219350040451 0.189931812222584 0.197045438267124 0.189872873826387 0.189686897555646 0.194353280069343 0.193100951138761 0.186129690403207 0.186533113037647 0.184060242177446 0.189920637138756 0.205474212567973 0.190038897231767 3 3 + 2494002 2494494 2494313.091 2492279 2495756 + gene protein_coding_gene FALSE TRUE AT3G07810.1|AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT5G47620.2); similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G26650.2); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.381388932076371 2.52864912422995 0.0340281657745508 1 3.21466352919045 12.3762126136473 0.381388932076371 0.19533246415532
AT1G05010_at 11.1232934370495 11.3868429891639 11.3315634935907 11.4698541466404 10.3687699838083 10.0176640518147 10.2261357782355 10.2013493499570 10.8565974890683 9.97811808082074 10.8751187733874 11.5145134978197 10.3902364990848 10.5592806056182 11.2246183569709 11.2478757066951 9.55123099092142 10.7795925203955 10.3330086424648 0.103057597207454 0.101681407700748 0.105132158419787 0.102539991445409 0.102001678661643 0.108472116080926 0.102450258981668 0.102435873186872 0.107989986158429 0.105837986082837 0.100615921180296 0.101389002687231 0.106374438910963 0.102480967112209 0.100421452047611 0.101213646809613 0.113051796864300 0.106537708476171 0.104387203940822 1 1 - 1431495 1432073 1431809.909 1431189 1432857 - gene protein_coding_gene FALSE TRUE AT1G05010.1 EFE (ethylene forming enzyme) Encodes 1-aminocyclopropane-1-carboxylate oxidase Identical to 1-aminocyclopropane-1-carboxylate oxidase (EC 1.14.17.4) (ACC oxidase) (Ethylene-forming enzyme) (EFE) (ACO) [Arabidopsis Thaliana] (GB:Q06588;GB:Q94K94;GB:Q9S9K8); similar to ACO2 (ACC OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT1G62380.1); similar to 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative [Arabidopsis thaliana] (TAIR:AT1G12010.1); similar to putative 1-aminocyclopropane-1-carboxylate oxidase [Brassica oleracea] (GB:AAO13735.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.220562247552869 2.52859345873271 0.0340311813034431 1 3.21458342825693 21.3442090402723 0.220562247552869 0.0797690800869075
AT4G25520_at 5.07622096606057 4.90373316173968 4.68572667472682 4.93544543592251 5.47923730789928 5.43928824172496 4.87130616860176 4.72460139101017 5.12044782618739 4.59803403960707 5.21029376009939 5.38077890159421 5.61999505585453 4.9233423091623 4.23181763622151 5.45174832312827 5.43755592434659 4.76922170881622 5.19199730085234 0.269434267998664 0.255405613844178 0.260184584540664 0.260997983856586 0.258661165846884 0.26344674965829 0.261000311071904 0.253251012866396 0.253251012866396 0.256980390287887 0.272487120356779 0.25525208635055 0.26148286846003 0.255974310342372 0.253251012866396 0.253251012866396 0.253251012866396 0.256870172748561 0.270439873658264 4 4 - 13032540 13032850 13032730.222 13032192 13036220 - gene protein_coding_gene FALSE TRUE AT4G25520.1 transcriptional co-regulator family protein similar to transcriptional co-regulator family protein [Arabidopsis thaliana] (TAIR:AT4G25515.1); similar to SEU1 protein [Antirrhinum majus] (GB:CAF18247.1) 0.199446736701313 2.52855502861549 0.0340332633092562 1 3.21452812855029 10.0635718807700 0.199446736701313 0.0587442772672223
AT1G32360_at 8.5177664985476 8.31809960210257 8.1858311586704 8.12867366841181 9.005072528259 8.45860624243592 7.85303057229202 8.03857339456978 8.2301757175533 8.10923838645476 8.22045532929458 8.32744546929716 8.63726019043087 8.40300984040567 8.1841272411875 8.50802001278517 8.4835744154014 8.17904025816482 8.03977466366166 0.147037042302600 0.146409138080815 0.142548709161457 0.148891929866917 0.142738866944076 0.142534978404588 0.150508904235232 0.146544405774969 0.159022715018821 0.149991616331006 0.150063171685611 0.142534978404588 0.148926433612926 0.152017633976291 0.158148015535946 0.142534978404588 0.148100353514604 0.143586389396030 0.146171325732067 1 1 + 11673882 11675042 11674632.182 11672911 11675319 + gene protein_coding_gene FALSE TRUE AT1G32360.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G35430.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE79187.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.25207436064864 2.52789541828475 0.0340690186748533 1 3.21357897638926 16.5603381334165 0.25207436064864 0.106141267521489
AT4G03060_at 8.83537520408992 8.8233642925498 7.85319139964935 7.26806311235395 9.15960823742574 8.53365885787325 9.24007516142466 8.85801121028636 5.6241434212054 9.04375770693447 9.3851060525238 9.02619238979515 8.85623104280598 9.77788090562608 8.17146680367817 8.66041229568239 9.02544496814861 9.22047483666503 8.18850541645878 0.164045553103277 0.163885569143059 0.174353348783119 0.188038056488954 0.159832150936158 0.167832685509957 0.161749088782541 0.164869126765749 0.219701016863859 0.160826843204348 0.162348382489044 0.164102865060792 0.165875235463137 0.166796238012388 0.169459665028678 0.159790464534606 0.172548998791709 0.162990233914712 0.167405954315570 4 4|0 -|/ 1351990 1352900 1352343.8 1351687 1354023 - gene protein_coding_gene FALSE TRUE AT4G03060.1 AOP2 (ALKENYL HYDROXALKYL PRODUCING 2); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors encodes a 2-oxoglutarate-dependent dioxygenase that catalyzes the conversion of methylsulfinylalkyl glucosinolates to alkenyl glucosinolates. involved in glucosinolate biosynthesis and secondary metabolism. similar to AOP3 (2-oxoglutarate?dependent dioxygenase 3), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT4G03050.2); similar to 2-oxoglutarate-dependent dioxygenase [Brassica oleracea] (GB:AAK95851.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.330511457535326 2.52502392184567 0.0342251155607779 1 3.20944714384411 16.8885201061559 0.330511457535326 0.162367782154295
AT1G60070_at 8.13109051124715 8.03559349559766 8.08345675141062 7.88424955844663 8.16922156532138 7.98651427655286 8.41830740531708 8.07021410348943 7.76520608782757 7.80919524827699 8.34576663602988 8.77662787886657 8.2204093294037 8.26938595402503 8.62346767493215 8.34718391714757 7.9348604396279 8.42408649304394 7.82068626452486 0.142533506228779 0.140192650694078 0.143204352317529 0.144558654252677 0.143611585732711 0.143843332618060 0.138121530590859 0.138826665648877 0.154713065316618 0.138704612134575 0.135897087426706 0.139701371909463 0.134653988526121 0.146738933350742 0.133510574063181 0.134316630974707 0.140377738101694 0.142471220285942 0.136345730857808 1 0|1 /|- 22147215 22147674 22147481.222 22146270 22153191 - gene protein_coding_gene FALSE TRUE AT1G60070.1 clathrin binding similar to GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1), clathrin binding [Arabidopsis thaliana] (TAIR:AT1G23900.2); similar to adaptor-related protein complex 1, gamma 1 subunit isoform a [Homo sapiens] (GB:NP_001025178.1); similar to PREDICTED: similar to adaptor protein complex AP-1, gamma 1 subunit isoform 2 [Rattus norve (GB:XP_341687.2); similar to Putative gamma-adaptin 1 [Oryza sativa] (GB:AAK98709.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Alpha/gamma adaptin, C-terminal; (InterPro:IPR008152); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Gamma-adaptin, C-terminal; (InterPro:IPR008153) 0.218210082930750 2.52328464690350 0.0343200146965297 1 3.20694458609247 16.1803739953867 0.218210082930750 0.078038652074147
AT3G04730_at 10.3143143252796 10.4850175576620 10.1148336687242 10.1443622400787 10.8491572407822 10.8142516184045 10.3007625459402 10.3618400748058 10.4034563592162 10.0625839286113 10.7136366828562 10.5377191512524 10.8185361289853 10.5819913881613 10.6425884668834 10.7411619244481 10.4639957048580 10.711598167524 10.7549880426498 0.0841664806215269 0.0820637530224656 0.0836813907992281 0.0835673032844327 0.0807262922948767 0.0824938314935553 0.0818538801005767 0.0807262922948767 0.0829554373337178 0.0826052029482417 0.0812804782107313 0.0815077878434372 0.0813352956754945 0.0824968127297107 0.0807262922948767 0.0807262922948767 0.0828279778288459 0.082297959743591 0.0807262922948767 3 3|0 -|/ 1289518 1290278 1289715.125 1288618 1290608 - gene protein_coding_gene FALSE TRUE AT3G04730.1 IAA16 (indoleacetic acid-induced protein 16); transcription factor early auxin-induced (IAA16) Identical to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (IAA16) [Arabidopsis Thaliana] (GB:O24407); similar to IAA7 (AUXIN RESISTANT 2), transcription factor [Arabidopsis thaliana] (TAIR:AT3G23050.1); similar to auxin-regulated protein [Populus tremula x Populus tremuloides] (GB:AAM21317.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.179780787227083 2.5231592047204 0.0343268693872575 1 3.20676409663282 20.9522738566414 0.179780787227083 0.0323572412038533
AT1G08110_at 9.90896383196455 10.1532431595971 10.3711349109683 10.3481503204148 10.6034985735718 10.6202285179933 10.4539357363929 10.4188958540036 10.2603437944663 10.0465660750315 10.5141672198972 10.1262493207081 10.4294377554299 10.3298553754227 10.0346002299982 10.3721249493752 10.1752044144227 10.2982294019919 10.1857268551303 0.0831307360843542 0.0769266946836204 0.0829298119244836 0.0802669539969038 0.0774762749994417 0.0817612223787779 0.0795747659102905 0.0801373050853183 0.0856302293991578 0.0774035777950829 0.0790511140493877 0.079180858051028 0.0769266946836204 0.0839636337221032 0.0835920208707996 0.0777792530583463 0.0817128717901214 0.081917307783551 0.0785350100269877 1 1|0 +|/ 2535731 2537335 2536595.167 2535325 2537928 + gene protein_coding_gene FALSE TRUE AT1G08110.1|AT1G08110.2|AT1G08110.3|AT1G08110.4 lactoylglutathione lyase, putative / glyoxalase I, putative|calmodulin binding / lactoylglutathione lyase Identical to Lactoylglutathione lyase (EC 4.4.1.5) (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D- lactoylglutathione methylglyoxal lyase) [Arabidopsis Thaliana] (GB:Q8H0V3;GB:Q9LMZ7); similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.2); similar to glyoxalase I [Arachis hypogaea] (GB:ABJ88950.2); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.186382388555247 2.52274554781017 0.0343494831366018 1 3.20616891940926 20.5843542755875 0.186382388555247 0.0429888007963828
AT1G55500_at 4.93516480190428 4.87882210614483 4.83299829988449 4.92645642486353 5.11485410294982 4.60156895212357 5.81615863161968 5.05075413208798 3.94060079032757 4.07435186099958 4.31568868679449 4.57396977791557 5.04967883900156 4.66796077218126 4.7212253533565 5.16810653037411 5.39842484598122 4.52801137891814 3.52485665660007 0.213647936873395 0.210819085294388 0.215064634595382 0.209916050558799 0.213357916076243 0.223285883933817 0.217001052135845 0.22412520452399 0.223483141027191 0.220160987107873 0.215919555757477 0.209916050558799 0.214240115873046 0.210671717535105 0.224169891538972 0.209916050558799 0.224501689311171 0.211923709270133 0.214514779649744 1 1|0 +|/ 20725353 20726089 20725651.556 20723241 20726399 + gene protein_coding_gene FALSE TRUE AT1G55500.1 similar to ECT2 [Arabidopsis thaliana] (TAIR:AT3G13460.4); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE87461.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.327512348719554 2.52223233969507 0.034377560030859 1 3.20543051258588 9.34434036930115 0.327512348719554 0.160597582502752
AT1G26800_at 8.33184425470478 8.57815158963222 8.28267155393828 8.18421458095541 9.30286801100094 8.77079489989682 7.68162974242174 7.8074354410525 8.19092003672408 7.76205151901872 7.94530005742157 7.42201734611248 8.21253992967286 8.03186757397272 7.20209705190181 8.20047450228724 8.36269302357683 7.88100811643448 7.87429131002358 0.181503514454351 0.180014870049740 0.188705162374576 0.193856384074531 0.194458855719273 0.194211687999188 0.186756627512493 0.187725900397864 0.186714874130788 0.185397743231411 0.186489192867310 0.189171100254264 0.182500233752401 0.180738821396183 0.194723476140323 0.184456148603123 0.187417217577287 0.186308080775877 0.193035704189787 1 1 - 9285594 9286082 9285893.091 9285086 9286311 - gene protein_coding_gene FALSE TRUE AT1G26800.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14200.1); similar to Os03g0324900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049982.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.250100374706046 2.52059523003107 0.0344672788096620 1 3.20307507831306 16.2922865869143 0.250100374706046 0.105163989048602
AT4G39850_at 7.75353390970083 8.05609223062331 7.71459465624342 7.88860088635115 8.16117262556093 7.67504715029845 7.8616590362846 7.95666846101556 7.81072147536147 7.56424596836905 7.02817842578504 7.0504989777492 7.19963538185636 7.3563327902111 6.78536140412472 7.87226207701216 6.56257124318438 7.01068955938122 7.30636632396352 0.217172882939142 0.214564258121082 0.228372674312921 0.222665560739663 0.211187221478712 0.226305980580058 0.217956517806980 0.219390148390700 0.230079964164447 0.212119525073597 0.210203934096458 0.215655002727168 0.219100178146045 0.215817830852378 0.229186228607897 0.213195790859460 0.267533891258538 0.228976599239797 0.212849736045144 4 4|0 +|/ 18495767 18496714 18496159.889 18488513 18497130 + gene protein_coding_gene FALSE TRUE AT4G39850.1 PXA1 (PEROXISOMAL ABC TRANSPORTER 1) Encodes a peroxisomal protein of the ATP binding cassette (ABC) transporter class (PMP subfamily) with significant identity to the human X-linked adrenoleukodystrophy protein (ALDP). The gene product promotes germination and represses embryo dormancy. ABI3, ABA1, FUS3 and LEC1 are epistatic to this gene. Mutants accumulate fatty acyl CoA suggesting a defect in uptake of fatty acyl CoA into the peroxisome. similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G54350.1); similar to putative ABC transporter [Oryza sativa (indica cultivar-group)] (GB:AAO33768.1); similar to AAA ATPase [Medicago truncatula] (GB:ABE94092.1); similar to putative ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD88253.1); contains InterPro domain ABC transporter, N-terminal; (InterPro:IPR010509); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.249693968305457 -2.52038253657217 0.0344789524061730 1 3.20276906552414 15.2177390303320 -0.249693968305457 0.104860912999948
AT2G34750_at 8.09370670898945 8.36255233950804 8.02559292742637 7.81908665901656 8.30761389383657 8.00239201781532 7.8440734443427 7.81383331068733 7.9677775253299 7.92402310286998 7.59895483772565 7.94270924740097 7.63204329605235 7.75493331586012 7.77969474535841 7.60811681062915 7.04468957381772 8.02389777519754 8.4727483459815 0.220501503347747 0.205446298936537 0.227363114515493 0.22293686093602 0.209241377734834 0.214718548141628 0.218086392158932 0.207075066677898 0.229294507443144 0.218306371718261 0.200008216244594 0.205630618868991 0.208318314744841 0.211244388253237 0.205948632842081 0.206754252533992 0.245838358427583 0.217154620073116 0.204271517419432 2 0|2 /|- 14667545 14668038 14667816.444 14667378 14671345 - gene protein_coding_gene FALSE TRUE AT2G34750.1 RNA polymerase I specific transcription initiation factor RRN3 family protein similar to RNA polymerase I transcription factor [Arabidopsis thaliana] (TAIR:AT2G39240.1); similar to RNA polymerase I specific transcription initiation factor RRN3 family protein [Arabidopsis thaliana] (TAIR:AT1G30590.1); similar to putative RNA polymerase I transcription factor RRN3 [Oryza sativa (japonica cultivar-group)] (GB:BAD45608.1); contains InterPro domain RNA polymerase I specific transcription initiation factor RRN3; (InterPro:IPR007991) -0.219128225415032 -2.52037483542433 0.0344793751554353 1 3.20275798551876 15.9309295501940 -0.219128225415032 0.0791141254229032
AT1G69730_at 8.72604537804174 8.77966328778738 8.80946990843804 8.82446283025592 7.94440912152594 7.97391925416266 8.32995014059599 8.80459791487382 9.04256744934035 8.51361581960045 8.31201254922038 8.53753537165686 8.48295183476413 8.72198864031759 8.22303363278017 8.9176225610783 8.32940578539099 8.63503354596226 8.52728963819737 0.0975912617875894 0.0963667081382148 0.0910857869403616 0.0917593467337644 0.0981466691934886 0.104349712675032 0.0988360264199627 0.0949687029331395 0.0994490868101298 0.0918514022292839 0.100826322061983 0.0966542196594436 0.0932280062770901 0.101438029222455 0.103651989581398 0.0984504722377888 0.0950258370850095 0.0983837907791269 0.0910857869403616 1 1 - 26232398 26232922 26232625.364 26232295 26235002 - gene protein_coding_gene FALSE TRUE AT1G69730.1 protein kinase family protein Identical to Putative wall-associated receptor kinase-like 9 precursor (EC 2.7.11.-) (WAKL9) [Arabidopsis Thaliana] (GB:Q9C9L5); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G19390.1); similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31110.1); similar to wall-associated kinase, putative [Arabidopsis thaliana] (TAIR:AT1G79680.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) -0.223270940314406 -2.52029708612553 0.0344836434430623 1 3.2026461240209 17.1312842090564 -0.223270940314406 0.0828606667046926
AT3G06190_at 7.19434398398484 6.88889622595058 6.96413977869748 6.8003158104095 7.04482617384037 7.23335478162599 6.5546428403643 6.0113478650556 6.13787584726352 6.6637361760771 6.99403583704893 6.78903366813745 6.13444687576101 6.9616559871003 6.93205680001737 7.08342076470537 7.092291712157 5.96698730789152 6.89042572390957 0.211403793334045 0.215825567122461 0.213386624935829 0.21244820655632 0.223949709011118 0.227299492995702 0.212199520248016 0.224267790213109 0.231115047337916 0.221346142400694 0.216180687076116 0.216125534183405 0.22044258345975 0.212866181325742 0.217745086779603 0.216902804770286 0.230064225663233 0.219830771367218 0.219591352405206 3 3|0 -|/ 1874651 1875748 1875132 1874297 1876919 - gene protein_coding_gene FALSE TRUE AT3G06190.1|AT3G06190.2 ATBPM2; protein binding similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to Os07g0101400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058677.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); similar to Os07g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060495.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|similar to ATBPM1 (BTB-POZ AND MATH DOMAIN 1), protein binding [Arabidopsis thaliana] (TAIR:AT5G19000.1); similar to BTB/POZ; MATH [Medicago truncatula] (GB:ABD28533.1); similar to Os07g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060495.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.264289971995072 2.51894850968739 0.0345577625574597 1 3.20070589207043 13.4906102832506 0.264289971995072 0.116198068078472
AT1G62710_at 4.7092279339252 5.2327108365256 5.59695420514042 5.93918302107741 5.61878798966424 5.14902820071735 6.61445617763491 7.1748965507738 2.85136803176926 4.89691245533322 2.6438178701285 3.31766873449303 4.35155554217944 3.76925792728501 2.48431214175754 3.68361217063232 4.51616234720028 3.28340142531067 3.71516567607104 0.244332037761272 0.237380415391614 0.240836291773270 0.233500928912098 0.233130792712551 0.247494720103508 0.233130792712551 0.239084473202000 0.243700435607542 0.235875519154703 0.248328071111700 0.242537878382684 0.233130792712551 0.238675805121226 0.235026694592011 0.235460599205243 0.236802009474880 0.250683520563020 0.234917921921303 1 1|0 -|/ 23227749 23228488 23228091.5 23227539 23230581 - gene protein_coding_gene FALSE TRUE AT1G62710.1 BETA-VPE (vacuolar processing enzyme beta); cysteine-type endopeptidase Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. Identical to Vacuolar-processing enzyme beta-isozyme precursor (EC 3.4.22.-) (Beta- VPE) [Arabidopsis Thaliana] (GB:Q39044;GB:Q93VS7;GB:Q9SI79); similar to GAMMA-VPE (Vacuolar processing enzyme gamma), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT4G32940.1); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49045); similar to Vacuolar-processing enzyme precursor (Pv-VPE) (GB:O24326); similar to Vacuolar-processing enzyme precursor (VPE) (GB:P49042); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) -0.335879860874756 -2.51866186499264 0.034573537532465 1 3.2002934955417 9.41809173489796 -0.335879860874756 0.166521627284008
AT1G68070_at 7.56032814360871 7.85033836065296 7.20418303862175 7.67464239894288 8.54640001421852 8.01910260318483 7.32285032779693 7.29472973415016 7.02670077334484 7.04546389455822 7.14721715819877 7.40308021149306 6.97897492676493 7.27767732160943 7.04438730671587 7.23601809318023 7.47191395421102 7.43715362752473 7.02167981755973 0.211227413231606 0.207795960190173 0.218486799222037 0.202826191861839 0.217164297494271 0.213090230138326 0.209326205487105 0.21857017877872 0.217735167756526 0.213156111225074 0.205941612143347 0.210331141139224 0.213387985787563 0.212042470705361 0.212748760698351 0.217590656408013 0.215852926816775 0.209251619341215 0.212649656097611 1 1|0 -|/ 25519104 25519803 25519451.7 25518895 25520531 - gene protein_coding_gene FALSE TRUE AT1G68070.1 zinc finger (C3HC4-type RING finger) family protein similar to RIE1 (RING-FINGER PROTEIN FOR EMBRYOGENESIS), zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01735.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE90731.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.286145850998901 2.51827535958085 0.03459481966147 1 3.19973743282743 14.8244889877054 0.286145850998901 0.132278898922897
AT1G03520_at 5.10921647814138 5.41688897942283 4.81025051633255 4.84673926717425 6.85241247424959 5.91183687257552 6.18248411699789 6.06893346742162 5.94407897495649 5.95100358111549 5.62873900873646 5.55478227941042 5.78137587962055 5.9809687391007 5.20031560447578 5.49905293406519 4.76947655455631 5.93849823064685 6.53898883790469 0.198408608261262 0.196994695505032 0.202863709762636 0.193492812183639 0.196638361447531 0.213786652617182 0.203398741123073 0.195086957620678 0.209555142395040 0.197451942700822 0.197381688850168 0.196195754665256 0.197275783816867 0.200121713312429 0.196562105595110 0.199284130333934 0.204079488397545 0.206650754614846 0.194135607875669 1 1|0 -|/ 877979 878560 878248 877863 880159 - gene protein_coding_gene FALSE TRUE AT1G03520.1|AT1G03520.2 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G03340.1); similar to Os08g0143500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060977.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); similar to Os12g0639700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067391.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406)|similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G03340.1); similar to Os08g0143500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060977.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) -0.344805144372654 -2.51818477810030 0.0345998092559580 1 3.19960711448335 11.4942660807822 -0.344805144372654 0.172497396635434
AT4G40030_at 12.0477995358134 12.0676726887349 12.0265358159119 12.0495729114878 12.3891927049158 12.2670088934658 12.1707444094068 12.3877369420119 11.6836303883079 11.8808621164534 12.2178121430544 12.3186778820365 12.4353593944101 12.2029215549708 12.2086987449689 12.2794093598138 11.9956480128673 12.0629169150126 12.0073018402574 0.0694981219816231 0.0647808054760325 0.0649159769509465 0.0658068483032778 0.0660422478317713 0.0685950663275038 0.0650014880640816 0.0667793085786094 0.072399999664654 0.0660157257995492 0.0650912318691344 0.0647808054760325 0.066463423897242 0.0669882122834388 0.0661404765075799 0.0648577743708472 0.0666305607028704 0.0647808054760325 0.0652865862967868 4 4|0 -|/ 18555844 18556378 18556054.333 18555571 18556966 - gene protein_coding_gene FALSE TRUE AT4G40030.1|AT4G40030.2|AT4G40030.3 histone H3.2 Identical to Histone H3.3 (HTR8) [Arabidopsis Thaliana] (GB:P59169;GB:Q6NR95); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10980.1); similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G40040.2); similar to disease-resistent-related protein [Oryza sativa] (GB:AAL78367.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.186252453336219 2.51693919320431 0.0346684947650721 1 3.19781513234801 24.2120056290009 0.186252453336219 0.0434157880123682
AT2G44760_at 8.13373817723796 8.24747399879634 7.94975519013664 8.1172598164498 7.66742938770479 7.92872904861778 8.14825365780312 7.69970087298973 7.44992114520288 8.1204137258566 7.32475610944443 7.55712876613369 7.21289359089799 7.01909574213157 7.63089692804799 7.45725691338077 7.72102828668462 6.92949759057986 7.50701162001103 0.173097312742615 0.171062645850769 0.170474751692626 0.171560002500940 0.168788964059845 0.175785199559574 0.165444728322599 0.166682218484992 0.185105549757338 0.171312794660159 0.168106772579870 0.165672854575034 0.169737973604947 0.181498084715500 0.164253768413960 0.169223399690581 0.175010284289498 0.180333889337334 0.176554433926629 2 0|2 /|- 18460131 18460617 18460344.2 18459926 18461884 - gene protein_coding_gene FALSE TRUE AT2G44760.1 similar to OSJNBb0038F03.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04351.2); similar to Os04g0545200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053466.1); similar to OSIGBa0101C23.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67252.1) -0.238688952711878 -2.51512753170321 0.0347686410469185 1 3.19520883474191 15.5110515543517 -0.238688952711878 0.0964258894871114
AT1G74920_at 10.1185227824912 10.2034842485653 9.88259607903755 9.8043587449999 10.1350425129679 9.790130591215 9.87644081227368 10.0491164173558 9.9619057095223 10.357896852142 9.97507385584014 9.74369648069497 9.8522141362466 9.86480313207432 10.0659301900435 9.93809220128064 9.6195324114345 10.0306691693048 10.1146834805756 0.0761669341247647 0.0742269992118651 0.0806678383284982 0.0788908424361078 0.0742372478347528 0.0825650168690323 0.0784594750462397 0.075377671285394 0.0849535116578344 0.0734294981081461 0.0761323550381356 0.0731206851693535 0.0756435406263006 0.0768923848279091 0.0732035153978538 0.0739335264912804 0.0783965256027118 0.0788569618932232 0.0733531944993033 1 1|0 -|/ 28142872 28144106 28143435.556 28142670 28146405 - gene protein_coding_gene FALSE TRUE AT1G74920.1 ALDH10A8 (Aldehyde dehydrogenase 10A8); 3-chloroallyl aldehyde dehydrogenase Arabidopsis thaliana similar to betaine aldehyde dehydrogenase Identical to Betaine-aldehyde dehydrogenase 1, chloroplast precursor (EC 1.2.1.8) (BADH) (Aldehyde dehydrogenase 10A8) (ALDH10A8) [Arabidopsis Thaliana] (GB:Q9S795;GB:Q56ZQ8); similar to ALDH10A9 (Aldehyde dehydrogenase 10A9), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G48170.1); similar to betaine-aldehyde dehydrogenase [Chorispora bungeana] (GB:AAV67891.2); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE82378.1); similar to betaine-aldehyde dehydrogenase [Gossypium hirsutum] (GB:AAR23816.2); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.208718158374050 -2.51440900781506 0.0348084408516062 1 3.19417517656184 19.9980015875441 -0.208718158374050 0.0696790865510545
AT1G31220_at 5.51871780784953 5.84937641813942 5.75724270829897 6.08232680587114 4.94441687584373 4.91834754614232 4.83458608090768 5.83135715401958 6.0562618706436 5.33328432811464 4.48381469852083 5.1085098503609 5.15535391866983 4.94419333875456 4.99768188942926 4.95118525962702 4.7014842356915 5.32209353963239 5.46409708627492 0.199445848888856 0.200918829590056 0.204106645269073 0.202217748052237 0.190001873325882 0.203796190371669 0.196298591303779 0.196645057130837 0.197402121284293 0.194591837517988 0.200277490950563 0.192832951928101 0.197741187057061 0.193220598051294 0.203680296300107 0.196553475064321 0.192590430846133 0.204269078695251 0.19289545131302 1 1|0 +|/ 11157631 11158332 11157997.8 11156783 11158664 + gene protein_coding_gene FALSE TRUE AT1G31220.1 phosphoribosylglycinamide formyltransferase N10-formyltetrahydrofolate-dependent phosphoribosylglycinamide formyltransferase that catalyzes the conversion of phosphoribosyl glycineamide to phosphoribosyl N-formylglycineamide Identical to Phosphoribosylglycinamide formyltransferase, chloroplast precursor (EC 2.1.2.2) (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) (PUR3) [Arabidopsis Thaliana] (GB:P52422); similar to formyltetrahydrofolate deformylase, putative [Arabidopsis thaliana] (TAIR:AT4G17360.1); similar to Phosphoribosylglycinamide formyltransferase, chloroplast precursor (GART) (GAR transformylase) (5'-phosphoribosylglycinamide transformylase) (GB:P52423); contains InterPro domain Phosphoribosylglycinamide formyltransferase, active site; (InterPro:IPR001555); contains InterPro domain Phosphoribosylglycinamide formyltransferase; (InterPro:IPR004607); contains InterPro domain Formyl transferase, N-terminal; (InterPro:IPR002376) -0.37138369243264 -2.51389981900884 0.0348366731705393 1 3.19344267409928 10.7550067678075 -0.37138369243264 0.190300886658282
AT1G33040_at 7.93561577174796 8.16369529634793 7.64614744803326 7.42565024765692 8.0995401737868 7.65834136788242 8.54293131684453 8.5830385861069 8.46440525788081 8.64018085724931 8.87762091408104 9.07576657887592 8.63136277748296 8.56134215618355 9.21502733250817 8.66335922335778 8.34442470405278 8.55995567176868 8.73789985215224 0.124506405696209 0.128116628052549 0.135009057210134 0.131232832186093 0.119481534044131 0.134198156456617 0.120061587030953 0.121476977890781 0.135437647273825 0.121588096242069 0.130480596952989 0.119154538518096 0.126858966643953 0.125294650848595 0.118638647643572 0.120860356763947 0.123615298864436 0.126111479210956 0.122565843158217 1 1 + 11967174 11967637 11967446.091 11966450 11967823 + gene protein_coding_gene FALSE TRUE AT1G33040.1 nascent polypeptide-associated complex (NAC) domain-containing protein Identical to Nascent polypeptide-associated complex subunit alpha-like protein 5 (NAC-alpha-like protein 5) (Alpha-NAC-like protein 5) [Arabidopsis Thaliana] (GB:Q8LGC6;GB:Q9MAN9); similar to nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative [Arabidopsis thaliana] (TAIR:AT4G10480.2); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABE85161.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.235977501363622 -2.51370468459495 0.0348474986486312 1 3.19316196212129 16.6845047304923 -0.235977501363622 0.094295621134149
AT3G16260_at 6.30567963639963 6.62627118754939 6.04362709837525 5.89792480406759 6.54315462310196 6.03709982554768 6.35648387220672 6.29084210730951 5.67793619506879 6.75057730785626 6.11350302238215 6.45189412801371 6.2456005471411 6.01890575659208 6.24495717890421 6.6940380512642 5.88205971793797 5.88111191267914 6.86222465207267 0.226380513783678 0.221511408599567 0.221123275148857 0.228813256227298 0.221169245010841 0.226169785053094 0.216039878454764 0.226305047812948 0.237284997279658 0.228882195549161 0.217610914362938 0.215685247160236 0.222054447070211 0.221096649549328 0.225713158516285 0.218813549460267 0.223561897625288 0.223979522370321 0.221381727984833 3 3|0 +|/ 5512448 5513100 5512746.8 5509380 5513210 + gene protein_coding_gene FALSE TRUE AT3G16260.1 catalytic similar to metallo-beta-lactamase family protein [Arabidopsis thaliana] (TAIR:AT1G52160.1); similar to unnamed protein product; gb|AAF29402.1 gene_id:MYA6.7 strong similarity to unknown protein-related [Medicago truncatula] (GB:ABE80923.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) -0.251552437697389 -2.50791499401155 0.0351702411489626 1 3.18483368823084 12.5735128148348 -0.251552437697389 0.107295063954414
AT4G28570_at 8.17531105841845 7.99978990831879 8.03738690296489 8.22925155478786 7.8587402342539 7.62271483582707 7.29747765121909 7.11751024030813 7.10507377287785 7.25330949902375 5.55296708486941 6.08465232482066 6.10837791506856 6.8050660880276 5.90683622405495 6.79827419823479 6.78734794696132 6.52624856664914 6.714220334471 0.223857679395346 0.221527672155959 0.223731574944963 0.219566911326703 0.223582913830876 0.223101421264186 0.226525396021083 0.220686923391407 0.232682856818054 0.219566911326703 0.223185404781028 0.219566911326703 0.222798882661744 0.228638872055994 0.238936005416738 0.219566911326703 0.231184037407595 0.224880775862483 0.220261369721131 4 4 + 14121340 14121863 14121615.091 14119431 14122093 + gene protein_coding_gene FALSE TRUE AT4G28570.1 alcohol oxidase-related similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT1G03990.1); similar to alcohol oxidase-related [Arabidopsis thaliana] (TAIR:AT3G23410.1); similar to putative alcohol oxidase [Oryza sativa] (GB:AAL31024.1); similar to Os02g0621800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047464.1); similar to Os10g0474100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064836.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain GMC oxidoreductase; (InterPro:IPR007867); contains InterPro domain Glucose-methanol-choline oxidoreductase; (InterPro:IPR000172); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953); contains InterPro domain Long-chain fatty alcohol dehydrogenase; (InterPro:IPR012400) -0.206739370573042 -2.50724497595064 0.0352077848460983 1 3.18386995695791 14.4649840461173 -0.206739370573042 0.068288865023615
AT4G34370_at 5.24208580091488 5.57425845840390 5.00868736189661 5.38642055007853 6.05425133639694 5.81706232363494 4.72424338647096 4.17813155222022 5.53311193493065 5.24286745023064 5.37396053503429 5.03881496397455 4.99133312966465 5.14653966905435 5.34817660981627 5.75778489004105 5.63075055414572 5.61131118218769 5.49197260426265 0.211313278370169 0.207329991195571 0.203654101692461 0.204268899212160 0.203654101692461 0.221627730726080 0.208605448555673 0.211682308736147 0.211996254986363 0.208022147244131 0.203654101692461 0.204348974951169 0.205058265275553 0.224676989950928 0.209625991055638 0.208367465083477 0.224276360384008 0.210069316453474 0.213065977534903 4 4|0 +|/ 16436510 16437007 16436744.4 16434337 16437313 + gene protein_coding_gene FALSE TRUE AT4G34370.1 IBR domain-containing protein similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G27710.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G16090.1); similar to Putative RING zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19129.1); similar to Os03g0233500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049474.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.288304436048888 2.50530950140653 0.0353164639471092 1 3.1810861159927 10.6406348986927 0.288304436048888 0.134884737541339
AT3G15710_at 9.5118876995464 9.52523970265956 9.24373299485457 9.31829160492863 9.53895311209343 9.12572534873535 8.6516665398162 8.70851928552322 8.95756786822959 8.47607607006616 8.85607146490227 8.91963333032825 8.61824734965453 8.74372028687091 8.85490074035653 8.67092812878824 8.3563925132525 8.65914122620297 8.04775060271176 0.143255377485378 0.143820092660277 0.148824123841625 0.143378478768207 0.142759596937340 0.148217641618904 0.1441148837234 0.139268527610913 0.143104303881410 0.147195985014521 0.143673026873511 0.143210393652653 0.140103977288633 0.143890230442445 0.140023819620965 0.145479100398410 0.148014808273338 0.142783501073241 0.153606078933817 3 3|0 -|/ 5323588 5324728 5324256.6 5323365 5324915 - gene protein_coding_gene FALSE TRUE AT3G15710.1 signal peptidase, putative similar to signal peptidase, putative [Arabidopsis thaliana] (TAIR:AT1G52600.1); similar to Peptidase S24, S26A and S26B [Medicago truncatula] (GB:ABD28715.1); contains InterPro domain Peptidase S26B, eukaryotic signal peptidase; (InterPro:IPR001733); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) 0.211714328987671 2.50526396077835 0.035319025171752 1 3.18102061522212 17.8048408162098 0.211714328987671 0.0733651121322118
AT1G04690_at 10.4767396985174 10.422244339295 10.7382310628051 10.6835669855729 10.6765944777337 10.4049745315187 10.4554430978152 10.5301819984112 10.2456079100706 10.0156803434331 10.2294279969015 10.2250303512971 10.334272101252 10.3429728520058 10.2386171099420 10.2340645829249 10.1941023699727 10.4623417532661 9.9065194049413 0.0862243987607064 0.0847284324431862 0.0877005131312522 0.089022182881991 0.0851948762867941 0.095051886050099 0.0866108431731104 0.087345161825052 0.0894155107428627 0.0875973604451026 0.08792526232376 0.0847284324431862 0.0869521225431492 0.0892278669522047 0.088113845562357 0.0851633547104122 0.0903197310571298 0.0860036846166095 0.0886484023900938 1 1 + 1314525 1315343 1314984.818 1313563 1315749 + gene protein_coding_gene FALSE TRUE AT1G04690.1 KAB1 (POTASSIUM CHANNEL BETA SUBUNIT); potassium channel similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to K+ channel protein (GB:AAA87294.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395); contains InterPro domain KCNAB voltage-gated K+ channel, beta subunit; (InterPro:IPR005399) 0.190678617222408 2.50478274633297 0.0353461003205839 1 3.18032849189538 20.7177667868805 0.190678617222408 0.0505489100388049
AT2G27090_at 6.74740898364216 6.61753168866072 6.88108716481936 6.93992595020656 6.95627739532199 7.15585792084639 6.4603427563082 6.16219378491484 5.9487075004901 5.94744344377897 5.64920851645458 5.87129795308951 5.99078909776038 6.03180027600821 6.00435280680274 6.11560696900507 6.48197608324194 5.70787549174307 6.2776189512993 0.184666738932352 0.185960162973194 0.190074193655825 0.195103781776577 0.184666738932352 0.193280281515273 0.189597729461804 0.204675321594640 0.200985278565658 0.196145049542074 0.185278683030265 0.189828685716489 0.188950798188416 0.192777900453744 0.19426401742937 0.187971277813019 0.190697599323113 0.184871164709919 0.190670351209724 2 2 - 11574960 11575285 11575120.091 11574514 11578934 - gene protein_coding_gene FALSE TRUE AT2G27090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39790.1); similar to Protein of unknown function DUF630 [Medicago truncatula] (GB:ABE82615.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.205053952578744 2.50436165970313 0.0353698095816833 1 3.17972285561509 12.7598465544830 0.205053952578744 0.0668123940185493
AT2G30080_at 4.52803360583599 4.99190435425035 4.92842671026151 5.07351677785228 4.90229302015038 4.79148863981339 6.00086596948537 5.99512325571159 4.71460274515211 5.13830552189884 4.85811874780772 4.40910300373439 4.94903523093457 5.1684921557406 4.54120927254836 5.27467361696207 4.96938961418783 4.62384634001661 4.68358343249127 0.255691813314636 0.245022387133438 0.25441221869416 0.251452417989712 0.246057533302025 0.257386961750302 0.244447004058195 0.266821354389332 0.248635877801473 0.249103073723941 0.244447004058195 0.244447004058195 0.252075199941937 0.254511473567002 0.254599405961645 0.244447004058195 0.262151229697760 0.247794069031999 0.257744255640948 2 2|0 -|/ 12845825 12846541 12846083 12845807 12847189 - gene protein_coding_gene FALSE TRUE AT2G30080.1 ZIP6 (ZINC TRANSPORTER 6 PRECURSOR); cation transporter member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. Identical to Zinc transporter 6, chloroplast precursor (ZRT/IRT-like protein 6) (ZIP6) [Arabidopsis Thaliana] (GB:O64738); similar to ZIP5 (ZINC TRANSPORTER 5 PRECURSOR), cation transporter [Arabidopsis thaliana] (TAIR:AT1G05300.1); similar to root iron transporter protein [Pisum sativum] (GB:AAC17441.1); similar to Os05g0164800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054742.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) -0.225657122370326 -2.50375477726612 0.0354040082576516 1 3.17885000491045 9.99882190713124 -0.225657122370326 0.0862739182827629
AT4G09580_at 4.95344870377143 5.55954762518084 5.38916699534736 5.97300718160682 6.4837257622344 5.63294509192645 5.95587851589433 6.32089796927554 4.10844132706928 3.53779595595984 4.20951926849085 4.29103839270805 4.65610567656894 4.65367943375926 4.00801922532539 4.80140573859319 4.25473136119501 4.18065754112216 3.55267003057692 0.244801635723867 0.235440145482060 0.237449242233422 0.24700791548474 0.251525161337594 0.256718275689849 0.256943694279170 0.242499421348192 0.240719850423503 0.243542823061712 0.239573495677854 0.235440145482060 0.236471169383169 0.240304366055886 0.248103747205781 0.24246853374396 0.257249300473304 0.237179169100276 0.241840940958668 4 4 - 6053250 6054284 6053829.727 6052349 6054394 - gene protein_coding_gene FALSE TRUE AT4G09580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71940.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE85136.1); similar to Os03g0703900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051019.1); contains domain UNCHARACTERIZED (PTHR12677) 0.410596764716616 2.50332449169265 0.0354282756348931 1 3.17823115250547 9.8410090727825 0.410596764716616 0.216511525887186
AT3G17300_at 6.28237870653879 6.82608001730478 6.48759403329573 6.7135921574206 6.40187784568672 6.60157032160914 6.03135499843425 6.18710559008338 6.32638201859015 6.19451095578392 6.71107274156716 6.62798919656815 5.83746889377761 6.6150519744008 7.06488884576717 6.44574803446237 6.97743835590471 6.38130659997594 6.3508308188468 0.198729481333725 0.195237973436207 0.192262621858822 0.192224263777266 0.198016054519709 0.199114819240211 0.195033504094479 0.197578815196351 0.202734827033462 0.19540186752048 0.195392839423370 0.189232443707419 0.197081570890523 0.192894131797836 0.203766852380908 0.190996120892142 0.197188298073671 0.191594012900092 0.193543086777502 3 3|0 +|/ 5907646 5908676 5908326.444 5907240 5908899 + gene protein_coding_gene FALSE TRUE AT3G17300.1|AT3G17300.2 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98984.1); similar to Os12g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067050.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011)|similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98984.1); similar to Os12g0566100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067050.1) 0.255737371987719 2.50320414418591 0.0354350660289461 1 3.17805806541462 12.8780417978183 0.255737371987719 0.110920020812207
AT2G23430_at 6.19168436603698 5.91109694432765 6.05041530882253 5.81286164295262 6.64995357020902 6.25701016337042 6.43843162416721 6.61671037111138 6.85993147742779 6.91203075912849 6.22763771367667 6.36503284849853 6.38074962165503 6.52963957919437 6.39661603123695 7.00743854714527 6.41237349248108 6.42851794422643 6.78030260046729 0.20694626532839 0.196343151070825 0.199689359825044 0.204138629081217 0.202992161197455 0.207463829203421 0.209666994498311 0.201550028725557 0.204824057919942 0.211435553579693 0.199833032231025 0.200721050929938 0.198665960787772 0.200388590686912 0.203611639139531 0.19470840995021 0.200375507834324 0.198389445208863 0.205376384904717 2 2|0 -|/ 9984118 9984941 9984690 9983826 9985101 - gene protein_coding_gene FALSE TRUE AT2G23430.1 ICK1 (KIP-RELATED PROTEIN 1) Encodes a cyclin-dependent kinase inhibitor protein that functions as a negative regulator of cell division and promoter of endoreduplication. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. similar to ICK2 (KIP-RELATED PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT3G50630.1); similar to CDK/cyclin inhibitor [Nicotiana sylvestris] (GB:CAC82732.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) -0.239587439241195 -2.50312719385802 0.0354394085015702 1 3.17794739358724 12.9006483328441 -0.239587439241195 0.0981006086559138
AT3G23700_at 11.0309667742730 11.1181372227394 10.8850348447241 10.9001340194640 11.0953279087537 11.0868031346348 11.4928295517800 11.4594522594315 11.2117190914370 11.4815922272879 11.5020332028031 11.3451637506688 11.2823124994352 11.1516301386704 11.3890842781073 11.3742502796500 11.2511060656378 11.1307680876482 11.3963119905373 0.0780417425486007 0.0776518683606426 0.081976981876139 0.0775145767908245 0.0814265054663303 0.08568639335038 0.0812780865024895 0.078399629580951 0.0933168616489277 0.0784409092743951 0.080587479246076 0.0773998245759728 0.0800392349352782 0.0817216691565593 0.0842840801387763 0.0773998245759728 0.0849942350711567 0.085223147458364 0.0796346558437123 3 3|0 -|/ 8531705 8532935 8532305 8531436 8533795 - gene protein_coding_gene FALSE TRUE AT3G23700.1 S1 RNA-binding domain-containing protein similar to RPS1 (ribosomal protein S1), RNA binding [Arabidopsis thaliana] (TAIR:AT5G30510.1); similar to putative ribosomal S1 protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07358.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.171717853544127 -2.50294618718279 0.0354496252117434 1 3.17768706616305 22.4668363682659 -0.171717853544127 0.0164296129044062
AT3G18350_at 4.73965266458753 5.16719532381471 5.12197766980678 5.1234263224832 5.58458385904312 5.42639458553155 5.55822422099008 4.94016340984204 4.46001461383560 5.24651149436281 5.57802681697879 5.27899151562987 5.28371739819365 5.0500525774462 5.35207934702140 5.43031169116458 5.6664168590021 5.35150786837051 5.3424051895514 0.231824024964055 0.232829724953196 0.229999090020896 0.235393904947508 0.229010767446972 0.251323688241450 0.235527292752204 0.247975236676398 0.244878007478715 0.227569657104440 0.237028215677039 0.2342104327239 0.243725083176965 0.235289298317626 0.227569657104440 0.229811099611064 0.248454976821722 0.24237239346817 0.240337954019552 3 3|0 +|/ 6299905 6300457 6300174.8 6296856 6300679 + gene protein_coding_gene FALSE TRUE AT3G18350.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48840.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01350.1); similar to Os10g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064086.1); similar to Os05g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055043.1); contains InterPro domain Protein of unknown function DUF639; (InterPro:IPR006927) 0.285182140525094 2.50214055807071 0.0354951340110611 1 3.17652840730619 10.4028014779170 0.285182140525094 0.132905287398782
AT3G12260_at 10.8039329856996 10.9173843365504 11.0487769933041 11.0076807506145 10.9387150354338 10.8754164801539 11.1029495200981 11.1764626166518 10.2877281190390 10.4802897257954 10.7371065670287 10.7783996061591 10.8510969187406 10.6176829015284 10.9725183751241 10.7620359900638 10.5707275632219 10.7893210139539 10.3609450412619 0.0782202140460595 0.0774310478576729 0.0776369504357357 0.081020370511398 0.0780248713212891 0.0770968200535728 0.078287781277803 0.0782020122553133 0.0952875002866446 0.0784907699416715 0.0769219823638135 0.0769219823638135 0.0798969326728729 0.0827660156567047 0.078429788736448 0.0775874902500332 0.0872366045546791 0.0777091106775447 0.078278207871401 3 3|0 -|/ 3909325 3910317 3909959.9 3908947 3910427 - gene protein_coding_gene FALSE TRUE AT3G12260.1 complex 1 family protein / LVR family protein similar to Os07g0640100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060420.1); similar to Complex 1 LYR protein [Medicago truncatula] (GB:ABE85498.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) 0.175502552536029 2.50203979530845 0.0355008300901993 1 3.17638349142314 21.5520058793181 0.175502552536029 0.0267933068126389
AT3G23640_at 9.3461105854615 9.48451591988979 9.4455226996365 9.34996074991661 10.1614553660322 9.848039811559 9.0377939480463 9.01534415264739 8.72761551684881 9.31010055458808 9.24809578325366 9.02172864595856 9.5208035467042 9.0600839301153 8.9382295371534 9.14622952091862 9.015998173132 9.19734450214077 9.63393878058366 0.130980437368180 0.117548150177739 0.128717771013564 0.126107230118179 0.123797772750629 0.123900975118064 0.127636914808701 0.119417776948123 0.129420299540398 0.123356494637168 0.119446313490502 0.119250324961898 0.121410441155907 0.131163269828260 0.133812101690904 0.122100685173674 0.135706267158363 0.127753503546133 0.119958775479283 3 3|0 +|/ 8508078 8509296 8508727 8501935 8509591 + gene protein_coding_gene FALSE TRUE AT3G23640.1 HGL1 (HETEROGLYCAN GLUCOSIDASE 1); hydrolase, hydrolyzing O-glycosyl compounds similar to RSW3 (RADIAL SWELLING 3), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT5G63840.1); similar to Os07g0421300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059483.1); similar to Os07g0420700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059480.1); similar to putative alpha-glucosidase II [Oryza sativa (japonica cultivar-group)] (GB:BAD31751.1); contains InterPro domain Glycoside hydrolase, family 31; (InterPro:IPR000322) 0.199991379761695 2.50187201117634 0.0355103169042165 1 3.17614218689688 18.6448174819465 0.199991379761695 0.0616767953016623
AT4G33650_at 6.92244099594712 6.76621413083506 6.92978354587199 6.56320900943657 6.51216644424932 6.61591249641622 7.04380665001791 6.95081190108566 6.75173760436087 6.73171841555215 6.48378036831988 6.37996410256655 6.64007011393825 6.52403224083077 6.36115999863614 6.86912500879646 6.37018622402838 6.4650103651466 6.52059046978838 0.162216743168187 0.161138511036404 0.158775711921671 0.165883157227642 0.157425197930616 0.162525551871163 0.161759231072546 0.166206413767505 0.164488501768464 0.164676687731992 0.155905740152760 0.160123068006413 0.162862110876797 0.166536209486699 0.159347653247233 0.157872317440087 0.164368295731217 0.162524703230171 0.164974419891115 4 4|0 +|/ 16165535 16166514 16166056 16160938 16166932 + gene protein_coding_gene FALSE TRUE AT4G33650.1 ADL2 (ARABIDOPSIS DYNAMIN-LIKE 2); GTP binding / GTPase Encodes a protein with high sequence similarity to the dynamin superfamily. Among those members ADL2 was most closely related to Dnm1p of yeast and likely a member of the Vps1p subfamily. Widely expressed in various tissues with highest expression in flower tissues. Chloroplast localized. Identical to Dynamin-related protein 3A (Dynamin-like protein 2) (Dynamin-like protein 2a) (DRP3A) [Arabidopsis Thaliana] (GB:Q8S944;GB:O22403;GB:O81882;GB:Q94CF3); similar to dynamin-like protein 2b (ADL2b) [Arabidopsis thaliana] (TAIR:AT2G14120.1); similar to OSJNBa0072D21.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE02157.2); similar to Dynamin central re (GB:ABD28549.1); similar to Os01g0920400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045220.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.210949994631083 -2.50004602614126 0.0356137266289393 1 3.173516144188 13.3778839214075 -0.210949994631083 0.073051822258848
AT2G21960_at 9.4331203966014 9.43547702807248 9.2394737690911 9.02366112161623 9.62768274584165 9.3480727947413 10.0294725996694 10.0470208106906 10.1247596264785 9.96562730859192 10.0304867974243 10.0679462351844 9.75046602723188 10.1089486508381 9.98988687377696 10.1349657454245 9.7881750159578 10.1337983462347 9.828133560074 0.124101981029138 0.113803103110064 0.118361733860325 0.123194052527225 0.120882727705869 0.117757919655685 0.122661136340337 0.126707456022259 0.118620971919337 0.116503135506336 0.118527343604411 0.115525867547650 0.118875804731376 0.116551402773626 0.121569770931338 0.113803103110064 0.119182110585527 0.116162445350675 0.119077040409985 2 2|0 +|/ 9363062 9364014 9363385.571 9361922 9364171 + gene protein_coding_gene FALSE TRUE AT2G21960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56180.1); similar to Os04g0639300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054033.1); similar to OSJNBb0003B01.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE03618.3); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58559.1) -0.199403027237472 -2.49996122173714 0.0356185366613329 1 3.17339418533596 19.5097098465691 -0.199403027237472 0.061201269844521
AT3G45190_at 6.81879340194813 7.18098788495169 7.19930807995286 7.43838088165061 7.86817878504922 7.38546313646389 7.1254934336938 6.89556253927679 6.47070731028541 6.57118931364398 6.63279822387188 6.52441991611576 6.98669539123376 6.6887485804715 6.40261713990623 7.01776010099927 7.20463363909229 6.57964893280464 7.02772388674531 0.198344911430236 0.188918857877272 0.192935927587409 0.192339590923929 0.199502224419648 0.193691470730379 0.201994703932600 0.205231163767644 0.214492742481396 0.194292482471693 0.202555063803349 0.190243769974102 0.198094254162827 0.205448860539408 0.199932489139964 0.194537906058593 0.204241713368024 0.201549121436076 0.194889220662443 3 3 - 16553050 16553535 16553302.636 16552658 16559146 - gene protein_coding_gene FALSE TRUE AT3G45190.1 SIT4 phosphatase-associated family protein similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT2G28360.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G30470.1); similar to SIT4 phosphatase-associated family protein [Arabidopsis thaliana] (TAIR:AT1G07990.1); similar to Os05g0592500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056496.1); similar to H0714H04.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66980.1); similar to OSJNBa0058K23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAD41753.2); contains InterPro domain SIT4 phosphatase-associated protein; (InterPro:IPR007587); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.266207571407613 2.49965881436954 0.0356356942731023 1 3.17295928942817 13.9612903899334 0.266207571407613 0.119172139028306
AT2G28470_at 8.8466480556199 8.89662103673096 9.37104231836245 9.46240935716182 9.29610932984619 9.0847170327901 10.8543703069835 10.7207398945292 10.1993721131376 10.3249780070968 10.3889550731026 10.5409067327065 10.3382816861201 10.4325795383752 10.364611264828 10.3182790294964 10.2456689956909 10.4241428629514 10.1672792342831 0.0691381643214547 0.0675505041871557 0.070149991787957 0.0703944494328501 0.069626365185435 0.0674465005587998 0.0652237559520657 0.0661324895707991 0.0665830601472235 0.0662510906123399 0.0681018725247505 0.0668744015329813 0.0655633195411121 0.0667861786739025 0.0687936751658656 0.0649215998102089 0.0712061849771616 0.0664394180130452 0.0665615226448901 2 2|0 -|/ 12176146 12176829 12176421.222 12175917 12180647 - gene protein_coding_gene FALSE TRUE AT2G28470.1 BGAL8 (beta-glactosidase 8); beta-galactosidase putative beta-galactosidase (BGAL8 gene) similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL9 (BETA GALACTOSIDASE 9), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G32810.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.1); similar to beta-galactosidase [Fragaria x ananassa] (GB:CAC44501.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91083.1); similar to beta-galactosidase [Raphanus sativus] (GB:BAD20774.2); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -0.187445142094683 -2.49927741378675 0.0356573455741773 1 3.17241079676362 19.8726927995437 -0.187445142094683 0.0468812159096902
AT1G05150_at 6.66250248943944 7.29318068183782 6.84858206757823 7.12555730457326 7.90235103125032 7.40449500114224 7.38242257678108 7.40776435671837 6.81182913754927 6.44425764724209 7.6749585315153 7.52453096942615 7.16970290729739 7.40430311743886 6.99966517055134 7.58062656611496 6.57966426745644 6.73782478060071 6.94329622002539 0.232456827182512 0.22252693046762 0.232285376080951 0.233527977654209 0.228305191208988 0.241378894566876 0.234444236776625 0.229259570430296 0.241562039580768 0.230361335159238 0.22252693046762 0.226767615411576 0.224933278006835 0.250810828551634 0.232453814778719 0.228848918485380 0.253748930920766 0.240777515042215 0.230093287083009 1 1 - 1484301 1484814 1484619.727 1484066 1486959 - gene protein_coding_gene FALSE TRUE AT1G05150.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT2G32450.1); similar to Os03g0263900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049638.1); similar to O-GlcNAc-transferase-like protein [Castanea sativa] (GB:AAL15891.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.304780347734863 2.49774263774997 0.0357446055622129 1 3.17020368327622 14.2243755422013 0.304780347734863 0.147144616127229
AT1G07020_at 6.04485858972923 6.05764346638139 5.57178253114238 5.21724919005635 5.79201415821824 5.6374743157351 4.36355635531621 4.60150183820021 5.37936331486025 5.02468873006204 5.64591997759189 5.45483681986236 4.88515142215904 5.80005058222991 5.85580677860168 4.86912150017455 4.54499518733709 5.40407923571151 5.08196152301249 0.227303517574247 0.226347796752425 0.237807941886714 0.231892566781914 0.239090642896363 0.231823932380491 0.226347796752425 0.227894756360552 0.24659308877883 0.226347796752425 0.226347796752425 0.226441716434662 0.226347796752425 0.234597814001071 0.232434428607071 0.229692855584582 0.235567673232115 0.231796586488724 0.229627843814677 1 1 - 2155367 2155726 2155566.909 2155212 2156007 - gene protein_coding_gene FALSE TRUE AT1G07020.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45080.1) 0.216615325847419 2.49769960784248 0.0357470551328008 1 3.17014180446793 10.6455099108991 0.216615325847419 0.078612918481733
AT1G15860_at 7.4541658672506 7.04515383317769 8.19691481719877 7.96901512653424 8.03896065502951 7.32140192264268 7.79992376197672 8.0316628360455 6.80919997724511 6.81612226982356 7.38323426196775 7.04866960177817 7.42421457164901 7.47475117127417 6.86508471419863 7.44614605445977 7.32885624230365 6.84603413333379 7.06801266149941 0.192754242364431 0.186605439171416 0.183764021203671 0.188465714672837 0.189416891120953 0.194742956413923 0.190633067765428 0.199174514463493 0.192934455978301 0.182628090208635 0.189747409987557 0.186482481457040 0.191519148508972 0.181136374364592 0.196898022971325 0.185369545154225 0.186947510557364 0.192810824103413 0.191941340439801 1 1|0 +|/ 5455479 5456673 5456199.333 5455050 5456926 + gene protein_coding_gene FALSE TRUE AT1G15860.1 calcium ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12760.1); similar to hypothetical protein DDBDRAFT_0185973 [Dictyostelium discoideum AX4] (GB:XP_638588.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein of unknown function DUF298; (InterPro:IPR005176) 0.314096048376633 2.49768062867679 0.0357481356165993 1 3.17011451165334 14.7946009258453 0.314096048376633 0.153602236140674
AT1G53580_at 8.9198782225936 9.1937491203817 9.19614237867234 9.37308690259118 9.35308577435723 9.41983359520325 8.55592586287698 9.09788253826416 8.34803356006958 8.65897256747118 8.1860432732619 8.62659586588797 9.11947179893022 8.61324825471663 8.07357945194787 8.58005816923728 9.13586483563796 8.76998783287728 8.56403273672744 0.151238195501970 0.147780665998577 0.149110202456568 0.151419367859142 0.149856139752355 0.144894437786548 0.150208482595693 0.151615091741181 0.164072348865300 0.144424790076377 0.149692671530460 0.150890157075291 0.143555496655919 0.152052980606779 0.160942384068205 0.149447390467622 0.155952704195676 0.155712478253565 0.145478424804423 1 1|0 -|/ 19995214 19996345 19995814.667 19994943 19997002 - gene protein_coding_gene FALSE TRUE AT1G53580.1|AT1G53580.2 ETHE1/GLX2-3 (GLYOXALASE 2-3); hydroxyacylglutathione hydrolase Identical to Putative hydroxyacylglutathione hydrolase 3, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLY3) [Arabidopsis Thaliana] (GB:Q9C8L4;GB:Q93VR2;GB:Q96332;GB:Q9LPH3); similar to GLX2-2 (GLYOXALASE 2-2), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT3G10850.1); similar to hypothetical protein LOC405865 [Danio rerio] (GB:NP_998094.1); similar to Os01g0667200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043807.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.254052395283149 2.49754404616685 0.035755912228207 1 3.16991810079562 17.719590952735 0.254052395283149 0.110061533949270
AT2G32250_at 5.48813855006993 4.7186250142777 5.84626450977294 5.13244370177135 5.8336182237665 5.0434535376356 5.05132226723134 4.67731306310425 5.04701481817996 4.8972757863603 5.41624473462972 5.98386860656619 5.10126839733063 5.2492449489114 4.92093160182974 5.39395493309959 5.51281958987968 4.6222572174643 4.67542354715512 0.199226298758043 0.191366113835636 0.19289744236565 0.189584132048641 0.194666120746532 0.189584132048641 0.195752630953279 0.191964151838864 0.202342460216537 0.192996931421350 0.191418419636624 0.194478603329717 0.190216583761299 0.192457985103383 0.202352945587919 0.191553796126727 0.199019281812856 0.197054535634553 0.19923288728689 2 2 + 13702114 13702493 13702296.9 13700182 13704036 + gene protein_coding_gene FALSE TRUE AT2G32250.1|AT2G32250.2|AT2G32250.3 FRS2 (FAR1-RELATED SEQUENCE 2); zinc ion binding similar to FHY3 (far-red elongated hypocotyls 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G22170.1); similar to transposon protein, putative, unclassified [Oryza sativa (japonica cultivar-group)] (GB:ABA95414.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.440965486357284 2.49685293453230 0.0357952882465641 1 3.16892426573570 10.2980532605932 0.440965486357284 0.236391298972928
AT2G47960_at 7.52660992355923 7.3726349130319 7.43665642668816 7.45412873252707 7.94467283997067 7.8789474742915 7.50667227686678 7.13790565837101 7.41222553879206 7.16992963794827 7.42848952520239 7.19691106541368 7.44835479311737 7.55839161853492 7.29155745356854 7.37363925155003 7.53453452832061 7.27972084541112 7.21633628316382 0.163417648504771 0.158246748180785 0.161444827234435 0.154619163068675 0.160161043636062 0.156263776585233 0.156407099385952 0.162513192338255 0.170574118455556 0.156118332336799 0.163737871359796 0.160641131439265 0.169236814081254 0.160591680323956 0.173966369705095 0.158239367526605 0.158898799482167 0.157541798601048 0.161940178624285 2 0|2 /|+ 19634548 19635324 19634886 19632684 19636253 + gene protein_coding_gene FALSE TRUE AT2G47960.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93677.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Protein of unknown function DUF974; (InterPro:IPR010378) 0.207715870291954 2.49665242305417 0.0358067205389687 1 3.16863592851374 14.8598353832172 0.207715870291954 0.070150612178997
AT1G45050_at 7.52543326450544 7.37469800193854 7.4833817140574 7.56061476603428 7.96974735758654 7.18284252253852 7.11097142955926 7.08177323569525 6.18920259887904 6.19687470660736 6.46788787859639 6.44597752015092 6.72606927090585 6.62116815284128 6.31322657989737 6.39525363531425 6.4834748944414 5.99676045572926 5.97430299033066 0.240799022888186 0.243331890980875 0.244978305242496 0.244670889813197 0.240987819747225 0.265792480845755 0.240733626691107 0.242771405640735 0.254077339028792 0.242907450918145 0.242864960147059 0.244188353121611 0.24750221539974 0.252061097863204 0.240733626691107 0.240733626691107 0.256671614491789 0.249026363794887 0.24196993260042 1 1|0 +|/ 17033948 17035311 17034380 17033721 17035638 + gene protein_coding_gene FALSE TRUE AT1G45050.1 ATUBC2-1 (Arabidopsis thaliana ubiquitin-conjugating enzyme); ubiquitin-protein ligase member of ubiquitin-conjugating E2-proteins Identical to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42) (UBC2-1) [Arabidopsis Thaliana] (GB:P42743;GB:O48952;GB:Q9MAK4); similar to UBC18 (ubiquitin-conjugating enzyme 16), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G42990.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89644.1); similar to Os12g0636800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067367.1); similar to Os03g0681400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050906.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.293514070170899 2.49575836705344 0.0358577404875866 1 3.16735028526753 13.6868598183679 0.293514070170899 0.139387750751995
AT3G50920_at 5.85077719447495 6.0317566985064 5.74223219445258 5.470136397438 5.25280385957527 4.1387216852149 5.13391925759945 4.88226623335844 4.21701124922088 4.57696923044203 3.96170977892695 4.26923379301829 3.66990979059605 3.77477866974834 4.25646387616759 4.24079964355706 4.29565642872446 3.6624619440933 4.63725564681633 0.249480243623324 0.246904464552987 0.255562846432476 0.266482583253346 0.251816934917723 0.266262076996054 0.248832304027354 0.248595822593608 0.256289734389452 0.251792359113871 0.247603805360361 0.249335937233362 0.246904464552987 0.264790190256854 0.257887813664673 0.248428890431596 0.272970905156536 0.247436555577539 0.246904464552987 3 3|0 -|/ 18933419 18934066 18933782.8 18933353 18934697 - gene protein_coding_gene FALSE TRUE AT3G50920.1|AT3G50920.2 phosphatidic acid phosphatase-related / PAP2-related similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT5G66450.1); similar to hypothetical protein [Thellun (GB:ABB45850.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934)|similar to phosphatidic acid phosphatase-related / PAP2-related [Arabidopsis thaliana] (TAIR:AT5G66450.2); similar to hypothetical protein [Thellun (GB:ABB45850.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) -0.392204140018514 -2.49520882548671 0.0358891367914042 1 3.16656006399013 9.55955441479271 -0.392204140018514 0.205585593069814
AT1G66530_at 6.33627767740069 6.14315853876 5.60934105391447 5.57341126298918 5.83445528537805 5.84069422320939 5.89367896615478 6.05978010789715 5.50706485161828 5.50340055651165 5.66816315876903 6.28655710970752 5.85191147103291 5.67872313462648 5.91980974873693 5.29625944017363 5.09329774141622 5.25527502694668 5.81422921712414 0.203315694195316 0.201207615146377 0.202563882626978 0.209070785707344 0.197189350626566 0.204962926009064 0.198167285695321 0.203272372365558 0.214034098893200 0.205198640901935 0.200942039552788 0.209981203173594 0.197189350626566 0.211690972765680 0.200298195820063 0.203532342622151 0.222494208966089 0.199150284054376 0.202343635319916 1 1|0 -|/ 24822731 24823837 24823147.375 24822574 24826005 - gene protein_coding_gene FALSE TRUE AT1G66530.1 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative similar to EMB1027 (EMBRYO DEFECTIVE 1027), ATP binding / arginine-tRNA ligase [Arabidopsis thaliana] (TAIR:AT4G26300.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08191.1); similar to ar (GB:ABE90423.1); similar to Ar (GB:ABE80787.1); contains InterPro domain Arginyl-tRNA synthetase, class Ic; (InterPro:IPR001278); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Arginyl tRNA synthetase, N-terminal; (InterPro:IPR005148); contains InterPro domain DALR anticodon binding; (InterPro:IPR008909); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080) -0.185365152002780 -2.49433574435588 0.0359390744270658 1 3.16530462602073 11.5310902123017 -0.185365152002780 0.0445307229505185
AT4G33890_at 7.92604187518311 8.26782919979175 8.12742756274052 8.3418541982124 8.42232348339774 8.33490685273444 7.88282698178096 7.62214154814332 7.06647895485246 7.16934930781024 7.24497974376324 7.00998412923876 6.98603845909143 7.25022847612694 7.20490176694664 7.45332781850196 7.55107014330242 7.0832488980731 7.24234800517686 0.168354469939528 0.166543935120321 0.168371303370140 0.168880224733098 0.169861525588649 0.170772114145523 0.167617493935557 0.161241121723772 0.168333831220420 0.161241121723772 0.165476819870864 0.165676487674491 0.168150529572516 0.163884359507938 0.169446811668617 0.162611009972983 0.174014160612738 0.166058130601104 0.163289748619008 4 4 + 16250520 16251055 16250725.455 16249648 16251384 + gene protein_coding_gene FALSE TRUE AT4G33890.1|AT4G33890.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14850.1); similar to hypothetical protein MA4_8L21.20 [Musa acuminata] (GB:ABF70007.1) 0.222749231573601 2.49379374043964 0.0359701106248102 1 3.16452527058708 15.3068512220782 0.222749231573601 0.0844953320754933
AT3G63250_at 6.50437579632245 6.32704423201928 6.65827106958077 6.41436362408346 6.93717154386651 7.11104294306356 6.21415610210667 6.06377559665389 6.31998063533767 6.49267599065466 6.3507248895271 6.16282233808704 6.4263728060456 6.50162489045094 6.50765149682771 6.20459374971054 6.69508904654256 6.22695524865096 6.63120878192521 0.1717117519302 0.178750964787712 0.179228691109245 0.172549993397193 0.177050805584747 0.174584590967845 0.175308223948848 0.176142304380058 0.179178979874460 0.178258380993005 0.171091210933956 0.170041435130924 0.181711195617323 0.173830161360642 0.170041435130924 0.178597480557391 0.186208834449080 0.178342607187347 0.180076273397049 3 3 - 23381555 23382552 23381995.909 23381283 23383657 - gene protein_coding_gene FALSE TRUE AT3G63250.1|AT3G63250.2 ATHMT-2/HMT-2; homocysteine S-methyltransferase Identical to Homocysteine S-methyltransferase 2 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 2) (SMM:Hcy S- methyltransferase 2) (AtHMT-2) (HMT-2) [Arabidopsis Thaliana] (GB:Q9M1W4;GB:Q9SDL6); similar to HMT3 (Homocysteine S-methyltransferase 3), homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G22740.1); similar to selenocysteine methyltransferase [Brassica oleracea var. italica] (GB:AAX20123.1); contains InterPro domain Homocysteine S-methyltransferase; (InterPro:IPR003726) 0.203032601148730 2.49369914366726 0.035975530185065 1 3.16438924955432 12.9616590022302 0.203032601148730 0.0656201026700694
AT4G35830_at 11.2136604135069 11.3241624886989 11.5912987507734 11.6198743085523 11.7820329285697 11.3518133981007 11.6815675384313 11.5379502861726 11.5162729545703 11.6549914976016 11.8571274278625 11.7054893459481 11.8346338532930 12.0013227637469 11.6978483006812 11.8269240698807 11.792802296483 11.9531333700106 11.4580594262752 0.0678877034508172 0.0657229157120543 0.0745912367594484 0.0691890942873355 0.0671464735176584 0.0701750935692978 0.0678529735166781 0.0657229157120543 0.0790675794874181 0.0671721641833078 0.0666950067788379 0.0657229157120543 0.0657229157120543 0.0699209611845127 0.0678794769385032 0.0657229157120543 0.0666785746719772 0.0685385845666135 0.0663236328768306 4 4|0 -|/ 16973053 16974075 16973525.7 16972602 16978061 - gene protein_coding_gene FALSE TRUE AT4G35830.1 aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) Identical to Aconitate hydratase 1 (EC 4.2.1.3) (Citrate hydro-lyase 1) (Aconitase 1) (ACO1) [Arabidopsis Thaliana] (GB:Q42560;GB:Q9SZT1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT2G05710.1); similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:P49608); similar to cytosolic aconitase [Nicotiana tabacum] (GB:AAG28426.1); similar to putative aconitase [Prunus avium] (GB:AAL13084.1); contains InterPro domain Aconitase/homoaconitase; (InterPro:IPR012084); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573); contains InterPro domain Aconitate hydratase 1; (InterPro:IPR006249) 0.218735941901235 2.49304939470772 0.036012777288897 1 3.16345498179829 23.201179083086 0.218735941901235 0.080937433279818
AT2G47790_at 6.78795168723059 6.83969985226098 6.88006464997531 6.72844550889211 7.55556142338111 7.14314630255588 6.95971919096206 6.65572302253062 5.23651277004872 6.11514021558835 5.98940004704861 5.81905825223593 6.10594496179377 5.78959591007739 6.32619272627938 6.11125000274968 6.44387156717094 6.35003992334767 6.40306579225433 0.239719972250515 0.226712478523783 0.229565164721131 0.226727737472812 0.235491806150004 0.236117812914333 0.226712478523783 0.226712478523783 0.244628363092961 0.242592266577713 0.233288919177654 0.230973596880879 0.231940312612412 0.238979634877670 0.236117269192563 0.232193855180276 0.234004900615233 0.23511817844497 0.227319795628278 2 0|2 /|- 19578172 19578645 19578382.5 19578034 19580097 - gene protein_coding_gene FALSE TRUE AT2G47790.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G02730.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97498.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.232355307081247 2.49280858575869 0.0360265916114304 1 3.16310872874318 12.9613683379578 0.232355307081247 0.092897661498711
AT2G42490_at 8.0952885265091 7.97461585667561 8.09909137552616 8.01467200544256 8.79037301326942 8.54903672421015 8.40856612620204 8.32539427819636 9.07767194051473 9.04135708805564 8.87160000753538 8.2612430763743 8.35844384151539 8.47557264955269 7.78770254951864 8.44570447954994 8.46839305247274 8.70742092958268 8.77460790576351 0.118526093851855 0.112555354367605 0.109754682295549 0.119655921323763 0.115195234655891 0.114258341612855 0.112931481124003 0.118269537335567 0.127125164447345 0.115195319806697 0.117435941985208 0.112086479255378 0.115020989545642 0.115167825948216 0.123620769879043 0.117483744929057 0.123284057326418 0.114078430997714 0.110157079722051 2 2|0 -|/ 17698698 17699676 17699089.5 17698485 17702927 - gene protein_coding_gene FALSE TRUE AT2G42490.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to peroxisomal copper-containing amine oxidase [Glycine max] (GB:AAD40979.1); similar to Copper amine oxidase [Medicago truncatula] (GB:ABE82492.1); similar to OSJNBa0022H21.18 [Oryza sativa (japonica cultivar-group)] (GB:CAE05498.2); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) -0.190104244399473 -2.49255522647362 0.0360411316596633 1 3.16274443210923 16.9754075972743 -0.190104244399473 0.0509995599983012
AT3G01400_at 6.68700745165745 6.97204613195307 6.84264451531447 6.95129165485537 6.76197739207888 7.38472567347945 5.89527558737954 6.5584907849975 6.6731907896013 6.48956352895615 6.79361647972485 6.69918262011258 6.66214452327658 6.92163568225708 6.49977530123655 6.89796331202538 7.16136777542304 6.56216521661028 6.54215300626358 0.175006456207562 0.179400592702066 0.186921690558122 0.182667798957872 0.176336384506651 0.187534319098651 0.184624965060663 0.182439017593400 0.185253469511856 0.184431088057682 0.186105662378123 0.179057786994436 0.175842940155132 0.178854766918262 0.192825990903884 0.178800736770051 0.182409814737775 0.176171619852888 0.187545007071443 3 3 + 152395 152964 152691.818 151769 153224 + gene protein_coding_gene FALSE TRUE AT3G01400.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT5G58680.1); similar to Os07g0587500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060138.1); similar to Os03g0435300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050437.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88245.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.331691871080717 2.49246141771964 0.0360465167532842 1 3.16260954829738 13.4281993016846 0.331691871080717 0.166053238130405
AT4G23710_at 7.74350428895356 7.41968116607941 7.53264087364836 7.54802388843222 7.28677196030896 7.26525730035008 6.95909712172984 7.03125589023924 7.45461033750457 7.2731626055511 7.87423663058822 7.91913545770444 7.49782368730618 7.706806721744 7.68877845223952 7.32340996953545 6.24219304036501 7.46390418615506 6.851742403116 0.144864081426322 0.142929193609536 0.152688276365774 0.148131152428974 0.143879844171881 0.152549474032646 0.146757687973050 0.150276104696711 0.149173865586237 0.147264774062045 0.14230119502652 0.144353232759734 0.145582873235151 0.141651908722818 0.145498007495409 0.144187351562602 0.160991654604314 0.143490049241587 0.145445512010072 4 4|0 +|/ 12350589 12351252 12350931.875 12350099 12351634 + gene protein_coding_gene FALSE TRUE AT4G23710.1 (VACUOLAR ATP SYNTHASE SUBUNIT G 2, VACUOLAR ATP SYNTHASE SUBUNIT G2); unknown protein Identical to Vacuolar ATP synthase subunit G 2 (EC 3.6.3.14) (V-ATPase G subunit 2) (Vacuolar proton pump G subunit 2) (VATG2) [Arabidopsis Thaliana] (GB:O82629;GB:Q9SUQ6); similar to VMA10 (VACUOLAR MEMBRANE ATPASE 10) [Arabidopsis thaliana] (TAIR:AT3G01390.2); similar to Vacuolar ATP synthase subunit G 1 (V-ATPase G subunit 1) (Vacuolar proton pump G subunit 1) (GB:O82702); contains InterPro domain Vacuolar (H+)-ATPase G subunit; (InterPro:IPR005124); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019) 0.195576562540951 2.49226795455365 0.0360576250685922 1 3.16233137643121 14.6771329613487 0.195576562540951 0.0575957069425651
AT2G26540_at 7.49445795284523 7.19925224972824 6.30374092661101 5.70813171983142 6.96860478672374 6.93468193363417 7.55246403151249 7.38408793883972 6.62335251523286 7.0813386896852 7.38245937893798 7.76668346201789 6.66348293793528 7.29682952187452 7.88669348480133 7.49332591797158 6.73894679374734 7.22921881196034 7.01995103167436 0.176798743322796 0.161626416102546 0.171997832207609 0.175400938345303 0.161603148902364 0.173719220219853 0.161618738576586 0.167065427701585 0.167969224056573 0.171397686189172 0.165060129332353 0.163061349113187 0.165439986784722 0.166737711744435 0.166045901106955 0.168474314485405 0.172962833922018 0.167130694016629 0.163478751322658 2 0|2 /|- 11294753 11296363 11295438.2 11294443 11297438 - gene protein_coding_gene FALSE TRUE AT2G26540.1 HEMD; uroporphyrinogen-III synthase similar to Os03g0186100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049201.1); similar to DNA replication licensing factor, MCM5 component (ISS) [Ostreococcus tauri] (GB:CAL57202.1); contains InterPro domain Uroporphyrinogen III synthase HEM4; (InterPro:IPR003754) -0.264892370869843 -2.49173943500439 0.0360879893030015 1 3.16157144909716 14.0508872512257 -0.264892370869843 0.118816615452761
AT3G15350_at 6.92610070115249 6.69109624577388 7.26608594301788 7.11828490212715 7.06391022318345 6.31731583962747 7.31386436094534 6.97323809189486 5.07191605420358 5.60521306432966 6.0365638120428 6.45164959747698 6.03697497778608 6.17176275487716 6.07533224133529 5.31500042443993 6.10758532776502 6.34835772877954 5.57477190892977 0.196797555275322 0.191040487705085 0.194095167589449 0.194143415677851 0.195941217787299 0.191644707284724 0.190036738090346 0.193455027312243 0.197453102365555 0.190237877834765 0.188144620619891 0.189823147939963 0.194361793942775 0.203096710389399 0.192177308106907 0.190685060371027 0.189448730938505 0.188144620619891 0.188144620619891 3 3 + 5168123 5168634 5168419.182 5166213 5169158 + gene protein_coding_gene FALSE TRUE AT3G15350.1|AT3G15350.2 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to acetylglucosaminyltransferase [Arabidopsis thaliana] (TAIR:AT1G53100.1); similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G27480.1); similar to glycosyl transferase family 14 protein [Musa balbisiana] (GB:ABF70128.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) 0.307963696311265 2.49119956983486 0.0361190319353083 1 3.16079521891745 12.7013388887406 0.307963696311265 0.149919850203878
AT1G14580_at 5.04243024998201 5.9802069938216 4.43006519466759 4.44424131069834 5.85294825306043 4.79364486601618 4.95666152001906 5.51805748912032 4.23629202586799 4.14922766801569 5.54335244679767 7.01783990327494 6.4341141410987 5.22888156517548 5.87726660758475 5.02099963871437 3.90937832575501 5.29819402947316 3.85781986000124 0.291246790008189 0.287528982310003 0.323382754908817 0.305790432339851 0.287528982310003 0.297844490875112 0.294881819165908 0.292124274061093 0.314370810323736 0.297045005108461 0.287528982310003 0.299658276203227 0.290772004126677 0.292970929630643 0.287528982310003 0.287528982310003 0.308247677972508 0.290236994591838 0.287528982310003 1 1 + 4991917 4992397 4992145.455 4989558 4992727 + gene protein_coding_gene FALSE TRUE AT1G14580.1 zinc finger (C2H2 type) family protein similar to ATIDD4 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 4), transcription factor [Arabidopsis thaliana] (TAIR:AT2G02080.1); similar to Os08g0554400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062466.1); similar to INDETERMINATE-related protein 7 [Zea mays] (GB:AAV51391.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.483012995240422 2.49020306343359 0.0361764023796486 1 3.1593624474323 9.93846524310447 0.483012995240422 0.263413716107087
AT2G25920_at 6.0479446256996 6.13210155067206 5.9414367060878 6.31733894047793 6.32838518362476 6.93497698104316 5.72236995449482 6.10143248988226 5.00884146856674 5.87796598355224 6.02337192530529 5.8757322299873 5.97673764804481 5.63325792115372 5.62605858551408 6.22404868321458 6.26043760856202 5.79167292387597 6.26407497262584 0.215247487741604 0.214309024586924 0.212708630519891 0.210838221900988 0.221847644518148 0.212374451889857 0.215953621199834 0.226119592761564 0.217532401316605 0.230718012151137 0.214296102781464 0.214932771304048 0.213238960746770 0.218891820007881 0.224498656520558 0.214176938245157 0.224282990601887 0.220340379016005 0.223034531321836 2 2 - 11061554 11062170 11061825.727 11061369 11063120 - gene protein_coding_gene FALSE TRUE AT2G25920.1 similar to 3'-5' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G25910.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84422.1) 0.294513090040087 2.48982843171054 0.0361979942342057 1 3.15882381329742 12.0124360534755 0.294513090040087 0.1405931376969
AT2G17520_at 8.3953045750975 8.88532097167196 8.63446433546478 8.3924651154683 9.0504818670349 8.921531865393 7.90718724285363 7.87853724052064 7.86474044786043 7.23117586854331 7.64162770620581 7.35525069824687 7.65097015228408 7.51618914178545 6.7778090841198 7.7327432708552 7.64300616936301 7.72504972478444 7.44546580192309 0.170341721438819 0.167347102289773 0.180670857164219 0.179467081138989 0.176794264885196 0.176719760786350 0.168634702516204 0.173078336536907 0.175347935410313 0.178914959508324 0.177722640298937 0.172442457190109 0.177325179030212 0.165644454844803 0.192163924099796 0.165644454844803 0.197614710604847 0.186315655256004 0.170313338576173 2 2|0 +|/ 7627252 7627945 7627584.5 7624292 7628175 + gene protein_coding_gene FALSE TRUE AT2G17520.1 IRE1A (Yeast endoribonuclease/protein kinase IRE1-like gene); kinase Encodes a endoribonuclease/protein kinase IRE1-like protein that is predicted to form a type I transmembrane protein structure and contain kinase/endoribonuclease domains at their C-terminal halves. similar to protein kinase family protein / Ire1 homolog-1 (IRE1-1) [Arabidopsis thaliana] (TAIR:AT5G24360.1); similar to Protein kinase; PUG; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE78057.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Ribonuclease 2-5A; (InterPro:IPR010513); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PUG; (InterPro:IPR006567) 0.237342496158810 2.48981044981387 0.036199030944853 1 3.15879795960003 16.0177240431370 0.237342496158810 0.0973005317370003
AT1G10610_at 3.65653298266658 3.79716654903103 4.4711146361851 4.05899027238726 5.75489683684218 4.9710940277781 4.40432768377842 3.39771601070822 5.06233235296691 4.76394747679012 4.82562436109204 4.55709206301126 5.22483881981934 5.04645998209937 4.82981254290824 5.33573789428671 4.95417077043933 4.71211368377917 5.37258459010067 0.203029437485109 0.198744323406346 0.206666819983553 0.197413812027086 0.199478315106280 0.197153777086330 0.191865966570586 0.20627352151517 0.200837776799050 0.194027829879951 0.195169391365561 0.189703088975428 0.189703088975428 0.196476607336492 0.210696123004294 0.191044837089845 0.209905147481444 0.190142908608271 0.204268848416153 1 1 + 3507884 3508560 3508201.6 3506187 3509007 + gene protein_coding_gene FALSE TRUE AT1G10610.1 DNA binding / transcription factor similar to AMS (ABORTED MICROSPORES), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16910.1); similar to bHLH transcription factor [Brassica napus] (GB:CAD54298.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.434765630739482 2.48962181964083 0.0362099078451625 1 3.15852675491441 9.31498957723811 0.434765630739482 0.233286300561784
AT3G01980_at 7.6294376208846 7.58728661505292 6.89170693689002 6.61538253165079 7.72576775805188 7.5629902916927 7.85808083681967 7.86321130138484 7.53007913328113 8.06408272274267 7.8026168179106 8.15875276427383 7.62503375172662 8.19802892064072 8.42818986808031 8.09144366721205 7.4307971688422 8.2645100176558 7.96235078840655 0.193744810211369 0.191007807547446 0.213944174344073 0.205979152740451 0.188104246788715 0.204362724456901 0.191850167180653 0.200925162616077 0.218388432665132 0.191101266510967 0.198768020370086 0.196281938556219 0.192852778419144 0.201866756204058 0.202473971840199 0.186675849965327 0.200392059523292 0.204287708959654 0.192440617249813 3 3|0 -|/ 327799 328480 328111.8 327462 329038 - gene protein_coding_gene FALSE TRUE AT3G01980.1|AT3G01980.2|AT3G01980.3|AT3G01980.4 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G55290.2); similar to alcohol dehydrogenase [Prunus mume] (GB:BAE48662.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347)|similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G17845.1); similar to alcohol dehydrogenase [Prunus mume] (GB:BAE48662.1); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.19389573669909 -2.48852806097868 0.0362730416459005 1 3.15695421946632 15.3927792383132 -0.19389573669909 0.0559838415725046
AT1G67940_at 7.9959729392852 8.31319657139113 8.22908326776525 8.29602649561454 7.8139213740177 7.60101783518232 7.39468207891908 8.19657454052858 6.85489118751316 6.95062388178169 5.81322535833727 6.12661178628956 6.49854929871091 6.51306013675085 5.28197618700293 6.62872802337773 6.82645095381518 6.01402549980466 6.74505390129434 0.222993226933314 0.216483295923731 0.221346067489681 0.221961793955554 0.214713689060414 0.234673494466830 0.217740485254587 0.211929941766009 0.223205609046625 0.222982824235329 0.213494648675175 0.219519625829588 0.217514945090478 0.222639712494493 0.21508478037844 0.216927461511029 0.234556132958354 0.220241097327292 0.218591434665245 1 1 + 25481685 25482300 25481989.727 25481333 25482466 + gene protein_coding_gene FALSE TRUE AT1G67940.1 ATNAP3 (Arabidopsis thaliana non-intrinsic ABC protein 3) member of NAP subfamily Identical to Non-intrinsic ABC protein 3 (MRP-related protein 1) (NAP3) [Arabidopsis Thaliana] (GB:Q9C9W0); similar to (P-GLYCOPROTEIN 7, PGP7), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G46540.1); similar to putative multidrug resistance protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53904.1); similar to Os06g0695800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058453.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.313727770368985 -2.48842142386620 0.0362792028640943 1 3.15680090587462 14.5115684190251 -0.313727770368985 0.154151948776025
AT3G56200_at 6.98741935226977 7.59965060846555 8.50749356237004 8.69143480236756 7.9479872796168 7.37888696449505 8.79823191023492 8.68395767502516 7.40281038726223 7.28220076162086 7.10742818841861 4.83642867815943 6.75230482886162 6.95368559262609 4.98000676975118 6.26914819907191 7.13493757953866 6.67320371847355 6.51331958936195 0.193858576986251 0.183867221394407 0.190588960752186 0.193342541332720 0.189352496176414 0.190118847544825 0.197380046612819 0.189291930570786 0.191042454027426 0.183867221394407 0.186094959612193 0.192768841771670 0.188754571028011 0.195453333098159 0.197777282306434 0.184757775470585 0.207197295270209 0.195952777187242 0.197703602435111 3 3|0 +|/ 20862142 20862733 20862358.2 20861008 20863001 + gene protein_coding_gene FALSE TRUE AT3G56200.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G40420.1); similar to Amino acid/polyamine transporter II [Medicago truncatula] (GB:ABE86055.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.306790768002767 -2.48741287208936 0.0363375265039336 1 3.15535091836675 14.7766343645778 -0.306790768002767 0.149428995592235
AT4G26630_at 9.62328174976658 9.54533786122457 10.1370278306533 10.0181132774093 10.0801086218153 9.87003190547379 10.0824518515792 9.84305054838926 10.0311294284310 10.0474916624558 10.0241573696016 10.1820900504825 9.99353319690012 10.1568477419114 10.1229458940743 10.3755353131639 10.1353228505225 10.2994140366197 9.97760106665125 0.0824921133285285 0.0807373375512328 0.0835784575498774 0.080854018944355 0.0845014404872941 0.0881286592520696 0.0827713235329371 0.080332171535274 0.0861288348413838 0.0795646604994039 0.080928544848482 0.0795769778589909 0.0774590368853009 0.0785734654788127 0.080698926572321 0.0789565419686077 0.077890989116026 0.0830599221454542 0.0780509658239543 4 4|0 -|/ 13430892 13431895 13431551.7 13430533 13435776 - gene protein_coding_gene FALSE TRUE AT4G26630.1|AT4G26630.2 GTP binding / RNA binding similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71219.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897) 0.197639996789082 2.48738093379227 0.0363393750074557 1 3.15530500152611 19.9899112187083 0.197639996789082 0.0603613901952365
AT1G47830_at 7.57110009229957 7.99135727816112 8.13469663757774 7.8867331825314 8.06843532915508 7.89079627611963 8.10981082777429 7.96829563270941 7.13365282854786 7.29123852217119 7.9016632694224 8.01804358421243 7.39757890027512 7.53764273757719 7.74438697508156 7.66229782770841 7.28652098868427 7.35892287379487 7.27760197768771 0.172282394689001 0.169526074500307 0.174082507657483 0.176107336985648 0.169835056018609 0.172354889536929 0.169854350967481 0.170839984029487 0.186831125210317 0.175224882134392 0.176552346251823 0.171166967623210 0.174193385815545 0.179560562647718 0.175456230051899 0.167617074105080 0.173927403317071 0.179413327433086 0.174142699076394 1 1 - 17615791 17617084 17616636.273 17615538 17617356 - gene protein_coding_gene FALSE TRUE AT1G47830.1 clathrin coat assembly protein, putative similar to AP19 (associated protein 19), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT2G17380.1); similar to clathrin adaptor complex small chain family protein [Arabidopsis thaliana] (TAIR:AT4G35410.2); similar to clathrin coat assembly protein [Gossypium barbadense] (GB:AAP40645.1); similar to Os12g0207300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066387.1); contains InterPro domain Clathrin adaptor complex, small chain; (InterPro:IPR000804); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.232121050201069 2.48719833609682 0.0363499450926822 1 3.15504248640128 15.3764264507394 0.232121050201069 0.0931420265530926
AT4G33460_at 7.07878448634385 7.39017697852443 6.85176558359727 6.92589748308817 7.8181399780646 7.12739332482749 7.40737773161474 6.88029210476298 6.08189447908686 6.0950375060237 6.3020934034986 6.5665598524519 7.0403459522934 6.78606665832138 6.7366597947634 6.8941604625014 6.78471573580462 6.47700700922819 5.9593325463964 0.215100651652309 0.212199825315124 0.204990855498189 0.204850797674788 0.206030341181972 0.208230754126393 0.199773908858261 0.204084179081164 0.213592688734464 0.207576951426626 0.206740286113903 0.199773908858261 0.199773908858261 0.205715608042591 0.201339646065113 0.205227532540581 0.207849430777395 0.205497347198367 0.202726287655458 4 4 - 16098370 16099872 16099206 16098073 16100269 - gene protein_coding_gene FALSE TRUE AT4G33460.1 ATNAP13 (EMBRYO DEFECTIVE 2751) member of NAP subfamily Identical to Non-intrinsic ABC protein 13, chloroplast precursor (NAP13) [Arabidopsis Thaliana] (GB:Q8H1R4;GB:Q9SZC3); similar to MDR3 (P-GLYCOPROTEIN 3) [Arabidopsis thaliana] (TAIR:AT4G01820.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL56381.1); similar to Os01g0770500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044378.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.322335432594212 2.48636691263119 0.0363981130721265 1 3.15384719000067 13.5569147684080 0.322335432594212 0.160242546681815
AT3G02870_at 9.67486002081178 9.9625528515557 9.83521009831035 9.63577341719112 10.5390058206788 10.0660551903298 10.7906197691914 10.7331775051943 10.4566311282382 10.4258725213136 11.4120891149083 11.4901366724052 11.0733276784049 11.3446427239768 11.3141980155535 10.9855432539537 10.3114072277163 10.8348189101653 10.1321885200075 0.0769910916409391 0.0752888673440606 0.084463370928523 0.0810023563754894 0.076945670400099 0.0826813709498316 0.081239174149625 0.0769260055352537 0.083304650710455 0.0752888673440606 0.0760073090214199 0.0758429271795454 0.0754740848160541 0.0785103016805486 0.0767303806086242 0.0752888673440606 0.085225754717197 0.0778833942689188 0.0752888673440606 3 3|0 -|/ 627759 628883 628188.143 627519 629852 - gene protein_coding_gene FALSE TRUE AT3G02870.1|AT3G02870.2 VTC4; 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis| similar to inositol monophosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G31190.1); similar to L-galactose-1-phosphate phosphatase [Actinidia deliciosa] (GB:AAV49506.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) 0.243124160694157 2.48613898346495 0.0364113292146985 1 3.1535195120204 20.8716574205689 0.243124160694157 0.102310887171615
AT2G21170_at 11.0214299326716 11.1103269993289 10.8750918057280 10.8540002950309 10.8219731880029 10.7559917031158 11.7075008700327 11.6296520253127 11.7698029497965 11.7939276066293 12.1419401177410 12.15296501598 11.5824395493717 11.8654540596542 12.1772767307746 12.0716513444078 11.6682429246971 11.8758298661413 11.6788378461625 0.0637392349642504 0.0598967704538393 0.061281882414563 0.0599074216191387 0.0600556211417209 0.0627875584056282 0.0587642310098042 0.0635397659013668 0.0671751230650692 0.0641014939936586 0.0587642310098042 0.0591514088099034 0.0607025150951186 0.0635465447297973 0.06197856016634 0.0587642310098042 0.0591188056335061 0.0619360031247966 0.0621114521094408 2 2|0 -|/ 9078466 9079154 9078702.556 9077835 9080314 - gene protein_coding_gene FALSE TRUE AT2G21170.1|AT2G21170.2 TIM (TRIOSEPHOSPHATE ISOMERASE); triose-phosphate isomerase|TIM (TRIOSEPHOSPHATE ISOMERASE) Encodes a nuclear triosephosphate isomerase. Identical to Triosephosphate isomerase, chloroplast precursor (EC 5.3.1.1) (TIM) (Triose-phosphate isomerase) (TIM) [Arabidopsis Thaliana] (GB:Q9SKP6); similar to ATCTIMC (CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE), triose-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT3G55440.1); similar to Triosephosphate isomerase, chloroplast precursor (TIM) (Triose-phosphate isomerase) (GB:P48496); contains InterPro domain Triosephosphate isomerase; (InterPro:IPR000652) -0.173005529316947 -2.48527736632695 0.0364613324792807 1 3.15228084234063 22.9417447283823 -0.173005529316947 0.0237037763694765
AT4G23260_at 9.01983681105964 8.99508954216376 9.7046424954768 9.28022885384006 9.4446982171717 8.83774592147084 8.88991411079318 8.6867572401062 8.20630891318706 8.54221339813114 6.95018193818149 5.77276984017757 8.14426194566968 8.27007913751758 6.2920460229849 8.81229450869766 8.86970421868525 7.61219528360156 8.97805300922216 0.170501614461250 0.175804823086586 0.167480828939534 0.172955977806512 0.179914645218923 0.17716078300466 0.168835471844067 0.167480828939534 0.187786638626959 0.170259835242262 0.181089521718339 0.183615941603059 0.172411633140168 0.174728606508725 0.188601413709224 0.169696175466336 0.173204486662971 0.188055222608904 0.170934580676459 4 4 - 12167539 12168366 12167903.182 12167433 12169904 - gene protein_coding_gene FALSE TRUE AT4G23260.1 protein kinase family protein similar to EMB1290 (EMBRYO DEFECTIVE 1290), kinase [Arabidopsis thaliana] (TAIR:AT4G23250.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11460.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G11470.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.283077024474085 -2.48287295180767 0.0366012364928098 1 3.14882437991859 17.1903475084034 -0.283077024474085 0.132971218433060
AT2G26080_at 11.6989977683885 11.8428322736032 12.1546774303736 12.2455554933819 11.8641586480083 11.9299577374983 12.8137059458787 12.9781630013866 12.6430536526297 12.8564762396494 12.6710908969353 12.3640440697888 12.7007470519112 12.6888486473226 12.3499778678560 13.0868446819061 12.7135785259378 12.7288859444207 12.7328608282794 0.0547483337498627 0.0530741296678034 0.0562540762738961 0.0523711441711125 0.0527400727236037 0.0606699888317666 0.0553336774157124 0.0540518007785711 0.0609503398073824 0.0533435793871723 0.0523711441711125 0.0523711441711125 0.0539515472818166 0.0569015925239633 0.0523711441711125 0.0523711441711125 0.0592823495299808 0.0567458146630307 0.0546116793730761 2 2|0 -|/ 11116454 11117415 11116966.333 11116081 11120906 - gene protein_coding_gene FALSE TRUE AT2G26080.1 glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative Identical to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P- protein) (GDCSP) [Arabidopsis Thaliana] (GB:O80988); similar to glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative [Arabidopsis thaliana] (TAIR:AT4G33010.1); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:P26969); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49954); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49850); contains InterPro domain Glycine cleavage system P-protein; (InterPro:IPR003437) -0.182982724712532 -2.48122542718394 0.0366974115650543 1 3.14645611133451 24.8945722627879 -0.182982724712532 0.0425034481098548
AT3G19553_at 8.97741218749984 9.34131128292124 9.33213812138288 9.29148300929957 9.99348295847657 9.58954091558078 9.3671830573214 9.20718572721898 9.31919635370945 8.98277010379186 9.57450425261528 9.152207526929 9.08067190617657 9.55395233783604 8.81382858107914 9.20722850632138 9.00087835820363 9.247760238076 8.86989364049604 0.144796784396201 0.133488336552323 0.141737480765728 0.144535379436599 0.137889882968725 0.142384996841914 0.140495785709364 0.133488336552323 0.146102350883055 0.133649976513670 0.137656132272876 0.142684740326586 0.147856733628604 0.133488336552323 0.144071560794229 0.134898562439178 0.142931788690955 0.134208899865404 0.136486685005789 3 3 - 6791113 6791636 6791357.909 6790748 6792925 - gene protein_coding_gene FALSE TRUE AT3G19553.1 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31830.2); similar to putative amino acid permease [Oryza sativa (japonica cultivar-group)] (GB:AAR10855.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97257.1); similar to Os03g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050538.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.237490225758382 2.47833423238146 0.0368668013807702 1 3.14230035887939 18.5180499888312 0.237490225758382 0.0983285131934718
AT1G62330_at 4.42674315467222 5.25195818795377 3.71268963698038 3.9008571383172 5.20896776159018 4.17082391521287 5.57492635271893 5.49394019085014 4.20320922912105 5.10430880522087 5.08494685716159 5.19169637482351 4.90452699110461 4.81127510193019 4.89289422682607 4.67497399868719 4.25330638116649 4.64790977016976 4.88426718606048 0.236286017026075 0.218636404000324 0.221837817266987 0.221417676569491 0.217403935972713 0.218750722212868 0.217381762892950 0.220513911673043 0.251589507574687 0.221957834552005 0.221386075392416 0.215545703692329 0.21838899132736 0.226329106971416 0.224840546483394 0.215545703692329 0.237952152235762 0.218568015769024 0.222800833070304 1 1|0 +|/ 23052931 23053651 23053259.778 23050558 23053858 + gene protein_coding_gene FALSE TRUE AT1G62330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G11990.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD37877.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.430730609628698 -2.47611699408473 0.0369972378950455 1 3.13911356395695 9.48675643538753 -0.430730609628698 0.232221579681729
AT3G13790_at 9.64492844538274 9.84213430719361 9.21551255845267 9.29692434283981 8.79941609073648 8.46546926428824 2.50525400925219 2.79025295004329 7.56949946679285 6.09481070384541 4.63967823058605 6.78510384214473 2.75331681472456 4.03173287983233 3.865151898668 2.49706655869046 2.60297821436013 3.53998461685845 4.77329196347624 0.217588189783418 0.215688551058277 0.216469429609971 0.215688551058277 0.217032560082012 0.225301739282107 0.216157085297242 0.222839750461608 0.244346321316968 0.226749878473695 0.218833241859597 0.217465488350827 0.219920377269668 0.216425203120694 0.215688551058277 0.225139191850045 0.217986326019609 0.22643950151022 0.216510803225135 3 3|0 -|/ 4533094 4534143 4533642.625 4532918 4535874 - gene protein_coding_gene FALSE TRUE AT3G13790.1 ATBFRUCT1/ATCWINV1 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 1); beta-fructofuranosidase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein with invertase activity. similar to ATCWINV5 (ARABIDOPSIS THALIANA CELL WALL INVERTASE 5), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G13784.1); similar to ATFRUCT5 (BETA-FRUCTOFURANOSIDASE 5), hydrolase, hydrolyzing O-glycosyl compounds / levanase [Arabidopsis thaliana] (TAIR:AT1G55120.1); similar to cell wall invertase precursor [Fragaria x ananassa] (GB:AAD10960.1); similar to cell wall apoplastic invertase [Vitis vinifera] (GB:AAT09980.1); similar to Sialidase [Medicago truncatula] (GB:ABD28503.1); contains InterPro domain Glycosyl hydrolase family 32, C-terminal; (InterPro:IPR013189); contains InterPro domain Glycoside hydrolase, family 32; (InterPro:IPR001362); contains InterPro domain Glycosyl hydrolases family 32, N terminal; (InterPro:IPR013148); contains InterPro domain Sialidase; (InterPro:IPR011040) 0.221098695028131 2.47560945553618 0.0370271607733625 1 3.13838411609721 12.5626085010343 0.221098695028131 0.0844717572029215
AT4G29790_at 5.93620041433449 6.01762207975264 5.66568126381914 6.05438440615887 5.76918322747513 6.34846578891026 4.95088348643647 4.95739052111398 5.19214239597042 4.38631247141739 5.08746904864054 4.9277285113575 4.68611427993185 4.7360319012458 4.39245504962928 4.98111789083832 5.0823733589646 4.21484742475644 4.59344986950564 0.253444496647699 0.240670521032774 0.243561184594416 0.242311012030646 0.246189767909878 0.273297086059318 0.247229977232024 0.24102131779206 0.262828058673362 0.252648226456774 0.247865959321662 0.242096831207497 0.244496996142427 0.246043069510275 0.255315116385390 0.242059464579983 0.251224951509818 0.278650958287698 0.242687373435253 4 4 + 14589633 14590088 14589848.909 14582994 14590581 + gene protein_coding_gene FALSE TRUE AT4G29790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19390.1); similar to Os01g0967100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045507.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44129.1); similar to Os05g0350700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055276.1); contains domain DHS-like NAD/FAD-binding domain (SSF52467); contains domain no description (G3D.3.40.50.740) 0.266726741860423 2.47497716258740 0.0370644728231707 1 3.13747538248387 10.4562191129010 0.266726741860423 0.121549221119160
AT1G54270_at 9.45208376893378 9.59943801052183 9.91252755676547 10.0309908848009 9.92000330265745 9.68302361876049 9.92909469156406 9.86559468059405 9.28094773290131 9.27226748823912 9.3438106775846 9.49848907410508 9.36179803548432 9.4310681573665 9.67033955507874 9.39620059963047 9.12026937023854 9.27985275601345 8.99037645715688 0.103587065542626 0.0995374807381086 0.109949611438436 0.102526195136086 0.0997469355724278 0.110375078978596 0.100231059456941 0.104362307211395 0.10075766667099 0.101330780113489 0.102341957705816 0.0991720410699436 0.0970282565119023 0.098544533707993 0.09985575757904 0.0970282565119023 0.100541309824471 0.101524808610797 0.0999693084610522 1 1 + 20265105 20265656 20265412.636 20263359 20265933 + gene protein_coding_gene FALSE TRUE AT1G54270.1 EIF4A-2 (eukaryotic translation initiation factor 4A-2); ATP-dependent helicase member of eIF4A - eukaryotic initiation factor 4A Identical to Eukaryotic initiation factor 4A-2 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (DEAD-box ATP-dependent RNA helicase 19) (TIF4A-2) [Arabidopsis Thaliana] (GB:P41377); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G72730.1); similar to EIF4A1 (eukaryotic translation initiation factor 4A-1), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT3G13920.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE81297.1); similar to Eukaryotic initiation factor 4A-2 (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (GB:P41379); similar to Eukaryotic initiation factor 4A-14 (ATP-dependent RNA helicase eIF4A-14) (eIF-4A-14) (GB:Q40467); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.190807427465635 2.47435620230016 0.0371011529186187 1 3.13658295201725 19.0835574414682 0.190807427465635 0.0536018361885163
AT4G18590_at 5.45553115294612 5.5918563310093 4.74525211885825 5.26257305831943 5.85362266433624 5.16871338449496 5.41078755665112 5.85617602707726 6.13138772356788 5.48077489415656 5.88656954161011 6.31398651899296 5.54820176687544 5.95237438372755 5.74959402066104 5.71219870375602 4.07032757263412 5.398941416679 6.16255123551568 0.265248385598092 0.268018643977993 0.272626211884835 0.265952142593828 0.264091767887826 0.281107202822332 0.264091767887826 0.270186702469950 0.269668252042362 0.279509445274443 0.272783237902675 0.265210041048899 0.264091767887826 0.274712894045451 0.271065199146322 0.268190724163474 0.274559254718137 0.264091767887826 0.264091767887826 4 4|0 +|/ 10236539 10237087 10236748.778 10236236 10237196 + gene protein_coding_gene FALSE TRUE AT4G18590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G52630.2); similar to Os01g0253600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042613.1); similar to ENSANGP00000012334 [Anopheles gambiae str. PEST] (GB:XP_319355.3); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.333463918774202 -2.47317262881304 0.0371711676556627 1 3.13488198986017 11.1700284658935 -0.333463918774202 0.168998943517655
AT4G04860_at 7.23957209792651 7.35412916289712 7.18479799119227 7.37162588207114 8.32264482242986 7.42130694053359 7.29002198873512 6.90735488394328 5.5302554406919 5.10037288424409 5.8616593958571 5.64851685795 5.86619563659815 5.66785206503308 5.01249008625552 5.58535506932932 5.71209781150654 6.13753383474761 5.51879706388968 0.258185242013079 0.254825139651683 0.270922588035996 0.254742506804048 0.261080018672986 0.273851371615872 0.266827554214886 0.254742506804048 0.275210890770115 0.260990733833506 0.258109725741421 0.254742506804048 0.256083656086302 0.269555850234875 0.254742506804048 0.258038036233292 0.266248459072064 0.270641446528719 0.254742506804048 4 4|0 +|/ 2460384 2461327 2460915.8 2459878 2461737 + gene protein_coding_gene FALSE TRUE AT4G04860.1 Der1-like family protein / degradation in the ER-like family protein Identical to Derlin-2.2 (AtDerlin2-2) (DER2.2) [Arabidopsis Thaliana] (GB:Q9ZS88); similar to Der1-like family protein / degradation in the ER-like family protein [Arabidopsis thaliana] (TAIR:AT4G21810.1); similar to Os03g0852200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051921.1); similar to Derlin-2.2 (ZmDerlin2-2) (GB:Q4G2J3); contains InterPro domain Der1-like; (InterPro:IPR007599) 0.340322587032824 2.47296737091279 0.0371833232730299 1 3.13458701113611 12.9212339166836 0.340322587032824 0.173648267821793
AT3G07140_at 7.69875289071336 8.2991962382877 6.2898361571874 7.10299208901658 7.25936386223069 7.05900340809477 7.22272765197128 7.25835581226001 6.02379698917868 6.98659312396096 6.89930309011786 6.85032997962588 6.42691938994441 6.05391265785877 6.39010897568329 6.62806731550186 7.01844036393031 6.16564733192044 6.66057108993672 0.242073800737987 0.246363161478299 0.25500859945866 0.246232589488558 0.245040991464421 0.249060559023679 0.250987049414444 0.242768713346952 0.283453483460712 0.24811171358823 0.255080161726236 0.242073800737987 0.249481335236702 0.242073800737987 0.252830743997645 0.24464900166353 0.251143053045216 0.259185379582216 0.246069369062807 3 3 + 2262939 2263598 2263171.636 2261203 2263743 + gene protein_coding_gene FALSE TRUE AT3G07140.1|AT3G07140.2 GPI transamidase component Gpi16 subunit family protein similar to Gpi16 subunit, GPI transamidase component family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93627.1); contains InterPro domain Gpi16 subunit, GPI transamidase component; (InterPro:IPR007245) -0.347427599397497 -2.47272388545519 0.0371977479538908 1 3.13423709735654 13.8293176166027 -0.347427599397497 0.178436768794308
AT4G36870_at 5.67752169727902 5.82080327902715 5.96609256220022 6.32375694003237 6.74517591686049 6.58379621768478 6.089056077926 6.18219620471436 6.12381570315648 6.02823183801868 6.34665732406028 5.83206587405949 6.0149846370506 6.39476883962698 5.30338300037271 6.16417368320622 6.3568827925115 5.87874335546919 6.08636290178956 0.190090731097291 0.193531625044094 0.187617280296615 0.186873187873099 0.188569299192405 0.199507595516827 0.183745429520983 0.194208390111198 0.191797281193564 0.185141017896096 0.183796034262567 0.182684772327801 0.190122963613040 0.181617873508078 0.196374977041272 0.179699404069425 0.194031255622629 0.187502530364057 0.182253832993407 4 4|0 +|/ 17371590 17373375 17372088.5 17368964 17373927 + gene protein_coding_gene FALSE TRUE AT4G36870.1|AT4G36870.2 BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor|BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding Encodes bel1-like homeodomain 2 (BLH2). similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to homeodomain protein [Malus x domestica] (GB:AAF43095.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.209649192548776 2.47233604366252 0.0372207362789223 1 3.13367973364986 12.2315136549403 0.209649192548776 0.074064951746844
AT1G28250_at 6.34617574383472 6.48618841238646 5.5028427877921 6.28556762671646 7.77443349552457 6.44609896186425 5.91677279759354 6.32592342628251 5.66072150637126 4.35872647285616 5.49535056134735 6.03920775299339 5.55681543613794 5.73776654434978 5.60313185898278 5.72686363477882 5.58955383702107 5.4242082363465 4.61176979412519 0.252434821491854 0.259057836438397 0.286889665783802 0.260798777838908 0.252434821491854 0.270638555960773 0.255292641236725 0.255961199318068 0.290047962974173 0.259972872926147 0.255066026949669 0.253807785628073 0.252434821491854 0.260030889082401 0.258609558945136 0.252434821491854 0.287413428313742 0.273351002656521 0.255474681727172 1 1|0 +|/ 9874312 9875123 9874609.889 9874234 9875566 + gene protein_coding_gene FALSE TRUE AT1G28250.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84779.1) 0.5015051322886 2.47228461989984 0.0372237853623847 1 3.13360583352244 11.6473428184304 0.5015051322886 0.277111184992425
AT3G52730_at 10.43565130138 10.6211402328581 10.6689334242976 10.6737811369186 10.4671119162935 10.3059420562842 10.3540249373176 10.6416026246046 10.1765196520987 10.4206068283461 10.9140672661712 10.9951183375430 10.7464215224654 10.5571952826742 10.8237622700746 10.8273831991454 10.4035775885130 10.4449079470788 10.3861819771165 0.087236246249391 0.087236246249391 0.0910143767246483 0.0889188040995424 0.0875721933579212 0.0900841995699455 0.0883678033407505 0.0936770080687698 0.0997788812010607 0.090515987808566 0.089290013377694 0.087236246249391 0.0908913397475118 0.0989953397176364 0.0907260510203894 0.0873095002091434 0.0939165587798184 0.0879955489967984 0.0909536835287891 3 3|0 -|/ 19554129 19555119 19554777.889 19553909 19555242 - gene protein_coding_gene FALSE TRUE AT3G52730.1 ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein similar to Ubiquinol-cytochrome C reductase, UQCRXQCR9 like [Medicago truncatula] (GB:ABE77853.1); contains InterPro domain Ubiquinol-cytochrome C reductase, UQCRXQCR9 like; (InterPro:IPR008027) 0.201061025131407 2.47128310176782 0.037283218745321 1 3.1321665924182 21.0419352850253 0.201061025131407 0.0654655280874192
AT1G50360_at 5.54301151334702 4.48216785036244 5.47263035275914 5.13056515371667 5.72148256366471 4.89903467995467 3.95440307247797 4.30336435814891 4.82530837414799 4.8951615612066 5.4753204011564 5.2735210509793 4.71885835644615 5.48880687510105 4.94852371940949 4.88535310901577 4.52557454165604 4.47947528834977 4.68726100841521 0.199470011850535 0.207385687829695 0.207355783981720 0.208035161357917 0.199134471711426 0.207458876607172 0.214159050020955 0.202350947438291 0.209462547876955 0.196639792708228 0.201181424326691 0.201949733639518 0.212915735095447 0.199622282207009 0.19793931823568 0.199285987335125 0.223222898979836 0.213978291743885 0.202661291372482 1 1 + 18660223 18660830 18660494.5 18653417 18661044 + gene protein_coding_gene FALSE TRUE AT1G50360.1 VIIIA (Myosin-like protein VIIA); motor member of Myosin-like proteins similar to ATM2 (ARABIDOPSIS THALIANA MYOSIN 4) [Arabidopsis thaliana] (TAIR:AT5G54280.2); similar to ATATM (myosin 1), motor [Arabidopsis thaliana] (TAIR:AT3G19960.1); similar to VIIIB (Myosin-like protein VIIB), motor [Arabidopsis thaliana] (TAIR:AT4G27370.1); similar to unconventional myosin [Helianthus annuus] (GB:AAB71526.1); similar to myosin VIII ZMM3 [Zea mays] (GB:AAD31926.1); similar to putative myosin [Oryza sativa] (GB:AAL31066.1); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.453521837723680 2.47116661718219 0.0372901375136268 1 3.13199919985057 9.82683551756436 0.453521837723680 0.247207383561214
AT3G50430_at 5.50131014963054 5.27699967361895 5.13056840276236 5.12789791676604 5.79185967641854 5.65758747687745 5.41629052920524 5.61738869187168 5.45216428236895 5.44938640266155 5.51515955615923 5.13966615009127 5.27573660347960 5.05780457331958 5.0510502341625 5.23905615461142 5.41766400415657 4.90970981936789 5.78321120271169 0.266775282689692 0.266300711075418 0.269696223226892 0.27867845835763 0.283828814005022 0.278938199582203 0.279188909349347 0.267795722694589 0.275956880186034 0.265746149190573 0.265746149190573 0.273027618895629 0.265923998454937 0.269573000333748 0.271914860820037 0.265746149190573 0.265746149190573 0.271421350840397 0.272341494693575 3 0|3 /|+ 18727431 18728238 18727908.25 18724678 18728390 + gene protein_coding_gene FALSE TRUE AT3G50430.1 similar to Os07g0120700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058781.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79736.1); contains domain FAMILY NOT NAMED (PTHR16057); contains domain gb def: Wins2 protein (Fragment) (PTHR16057:SF4) -0.193437650935531 -2.47067136137553 0.0373195683507607 1 3.13128750564525 10.8211469060601 -0.193437650935531 0.0570796656598434
AT3G51950_at 8.07523419302976 8.27430633803298 8.39853906769883 8.23509330342847 8.7803814809489 8.59947390949393 8.74867938056675 8.67021188766513 8.51732568700361 8.93890418574431 9.40347036723005 9.4020890961322 9.4538716193929 9.22018313589848 9.1277738631202 9.3444316331863 9.15375359226476 9.0425256841144 9.37731576287082 0.138943257739941 0.135046212550003 0.135803557676306 0.1473750745761 0.132479986886991 0.151751368360609 0.138199444511929 0.131804602958365 0.159142683699060 0.141298167361422 0.139712565339444 0.136665452876181 0.143649728396757 0.146684617461381 0.135671508729953 0.134537732259660 0.140163042005527 0.141098910946453 0.141819145788478 3 3 - 19289227 19290050 19289628.091 19288756 19292324 - gene protein_coding_gene FALSE TRUE AT3G51950.1|AT3G51950.2 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G63450.2); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14273.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.192630576306685 2.47062464435203 0.0373223457392569 1 3.13122037271639 17.5792537380033 0.192630576306685 0.056137218804968
AT1G10650_at 6.9332273800779 7.23418186744876 7.07870830766977 7.29456125701565 7.49577878427757 6.93542667083812 8.30411919743494 8.27772861974893 6.83281994992663 7.25542382966835 7.235182227065 6.81281763674304 7.28416043552382 7.51270925212982 6.3458480309343 7.85607479553306 6.62066732619936 6.7186454862789 7.15397309507098 0.185832167826513 0.192690600466307 0.190327636499071 0.216049178048705 0.192999819283447 0.202645270026448 0.204205746377898 0.199305334893081 0.199467536457828 0.192138078581959 0.195745352058563 0.188935183416367 0.189711699095833 0.197496210200905 0.197093478763991 0.189368129561338 0.212505655178769 0.192633493996099 0.188921404056936 1 1|0 -|/ 3524129 3524783 3524408 3524019 3526347 - gene protein_coding_gene FALSE TRUE AT1G10650.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G60610.2); similar to Os02g0130300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045784.1); similar to putative S-ribonuclease binding protein SBP1 [Oryza sativa (japonica cultivar-group)] (GB:BAD07738.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.259335660324213 -2.47011662483017 0.0373525615849618 1 3.1304903484119 14.5087175640754 -0.259335660324213 0.116327887299637
AT1G51510_at 9.31210255747839 9.31444955077948 9.21552746469787 9.23627560809115 9.3971363568769 9.10334390926763 9.27276767492 9.4341021668707 8.69832590485167 8.71026991601495 9.06944814002256 9.20143079972726 9.19318828356705 9.21448265601926 9.31092026502833 8.88824861203184 9.04287535859851 8.93252949428804 8.46038937484009 0.121910519519318 0.118474994077273 0.120699119159260 0.126809121847102 0.124768802109617 0.120900554433909 0.117956751749171 0.123143195894271 0.132352186413132 0.123082085287038 0.119434234163219 0.114944635439412 0.118837946503983 0.115243720438419 0.123330105035129 0.117126011932839 0.126315637941688 0.118885717828227 0.130012785023874 1 1|0 -|/ 19107057 19108320 19107868.333 19106467 19108518 - gene protein_coding_gene FALSE TRUE AT1G51510.1 RNA-binding protein, putative similar to ATSC35 ("Arabidopsis thaliana arginine/serine-rich splicing factor 35, 35 kDa protein"), RNA binding [Arabidopsis thaliana] (TAIR:AT5G64200.2); similar to salt tolerance protein 4 [Beta vulgaris] (GB:CAC85245.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA binding motif protein 8; (InterPro:IPR008111); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.194180366573017 2.46873359276534 0.0374349458250954 1 3.12850298568327 18.1505309193207 0.194180366573017 0.0581161813553574
AT2G30000_at 7.2750632884442 7.38666458360595 6.91056129553177 7.06572811569797 6.92571600576663 7.54238947674381 6.4196027668736 6.26435448544723 5.91095891599838 6.39268260325223 6.11997841017458 6.23893657054733 6.52757905489667 6.20123903205265 6.72981379799438 6.21692715554334 7.03479232694816 6.13939264856295 6.18002331749347 0.192897366425902 0.18765146263922 0.191839431343958 0.188271932593503 0.191021821674024 0.182917534365578 0.194683208933622 0.187241291902614 0.202639249189857 0.189877476000084 0.190061133974209 0.186869033419314 0.185998521025695 0.187310522613552 0.185373205411977 0.187152416556735 0.183991582860815 0.186410059872761 0.187010104429759 2 2 - 12811143 12811377 12811245.909 12810930 12812054 - gene protein_coding_gene FALSE TRUE AT2G30000.1 Identical to Hypothetical protein At1g07170/At2g30000 [Arabidopsis Thaliana] (GB:O80873); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07170.2); similar to Os04g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054163.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_799069.1); contains InterPro domain PHF5-like; (InterPro:IPR005345) 0.257269102342143 2.46795808338649 0.0374812211313831 1 3.1273886446164 13.2549119956829 0.257269102342143 0.114911396838026
AT4G03410_at 8.29959083192518 8.1484400517677 8.61865198346166 8.2532986433875 9.11250986894152 8.50455244470944 8.56500965835268 8.2480251408753 7.27420713144954 7.53970036768306 7.75544681944121 7.371874778222 8.18413955296711 7.90599107835927 6.7025190265246 8.25787519567884 7.79804514804557 7.33804176276205 7.37949955385475 0.187338420385593 0.187338420385593 0.188213865974095 0.188388256351069 0.189462436474386 0.195950485137118 0.188014061599718 0.192578882187765 0.217187000492715 0.207809966721613 0.189851935920527 0.190638231804779 0.187338420385593 0.196560393621968 0.209756764506369 0.187849688773972 0.212427705235732 0.221756079425486 0.187338420385593 4 4|0 +|/ 1502163 1503083 1502625.75 1501167 1503560 + gene protein_coding_gene FALSE TRUE AT4G03410.1|AT4G03410.2 peroxisomal membrane protein-related similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT1G52870.2); similar to peroxisomal membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD34004.1); similar to Os03g0583800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050563.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.286713066824558 2.46650039130217 0.0375683584969793 1 3.12529413444971 15.9997818385506 0.286713066824558 0.136967167480928
AT2G26300_at 6.87750392520826 7.23929712449796 7.53047045332998 7.48457207567571 7.95320045695617 7.51759885189542 6.93847294458529 6.1459559115018 6.25577634348477 6.48398755807302 6.47430264737788 6.41190506960872 6.44324132398463 6.14665011170548 5.69116022889922 6.57055129762663 6.54754273931847 6.33694363857725 6.71439695964799 0.202691162606764 0.198705509616341 0.203747100458995 0.204075086497305 0.204223147714389 0.204620562348780 0.198793647611661 0.206147361064093 0.209093294903269 0.202329006936725 0.201411431298143 0.200143776041444 0.202622669146025 0.206149926616740 0.198010426270054 0.197116988997422 0.210768786637688 0.208725092070859 0.199063816182262 2 2|0 +|/ 11206606 11207871 11207388 11204074 11208180 + gene protein_coding_gene FALSE TRUE AT2G26300.1 GPA1 (G PROTEIN ALPHA SUBUNIT 1); signal transducer Encodes an alpha subunit of a heterotrimeric GTP-binding protein. Positive regulator in abscisic acid (ABA) inhibition of stomatal opening. Recessive alleles have complex phenotypes including: reduced brassinolide response, reduced cell divisions, round leaves, short hypocotyls. Identical to Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (GPA1) [Arabidopsis Thaliana] (GB:P18064); similar to XLG3 (extra-large GTP-binding protein 3), signal transducer [Arabidopsis thaliana] (TAIR:AT1G31930.2); similar to Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (GB:P93564); similar to G protein alpha subunit [Phaseolus lunatus] (GB:BAF30964.1); similar to Guanine nucleotide-binding protein alpha-1 subunit (GP-alpha-1) (GB:P49082); contains InterPro domain Plant G-protein, alpha subunit; (InterPro:IPR002976); contains InterPro domain G protein alpha subunit, helical insertion; (InterPro:IPR011025); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019) 0.332109914042342 2.46588303051613 0.0376053241924689 1 3.12440709640269 13.6171376775593 0.332109914042342 0.168746754143932
AT3G21670_at 9.55799845422538 9.85402025798733 10.6814137979074 10.9135907869798 11.1524479763070 10.9492042189231 11.4081382005673 11.5928948921292 10.9510213760836 11.0919706087694 10.9056458521354 10.5773720915619 11.5244039987924 11.0745412733949 10.6031306732066 11.5019554595076 11.6934953301947 11.1959543831954 11.0280072329727 0.0857323184461128 0.083029773102065 0.083831386878752 0.0844080251664992 0.0831501978823816 0.0878666460840162 0.0871979769033653 0.08473584241933 0.0954446059487156 0.0820860393013298 0.0849699084172108 0.084996116614215 0.0862298997003657 0.0865751100474544 0.0837812048967055 0.081634567651518 0.0828714052053987 0.0824773933037232 0.081634567651518 3 3 - 7627103 7627434 7627295 7626764 7629158 - gene protein_coding_gene FALSE TRUE AT3G21670.1 nitrate transporter (NTP3) similar to nitrate transporter (NTP2) [Arabidopsis thaliana] (TAIR:AT2G26690.1); similar to Os02g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047240.1); similar to nitrate transporter [Prunus persica] (GB:BAC81420.1); similar to nitrate transporter [Prunus persica] (GB:BAD22820.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.215898610304386 2.46474151942605 0.0376737707110858 1 3.12276699067861 21.8428279674736 0.215898610304386 0.0806104381119816
AT3G19740_at 8.29640296313302 8.36428774512663 8.09652566535222 8.1885974683168 7.9004763065415 8.02829416784505 7.96482855396984 7.87147389225002 7.96321453841365 7.71732222650486 7.50186828729009 7.41466453534346 7.12163249553058 7.65156273124833 7.67855174955983 7.61104270139705 7.65715153901973 7.26411316165374 7.62808365302506 0.151222912574550 0.145216700406493 0.147453002511908 0.143726500886650 0.156974685028833 0.152913249912148 0.160130596827745 0.153179501245518 0.162642401822494 0.143229597064646 0.151072969132775 0.145736053963775 0.147919974458076 0.151694203640584 0.145090798737981 0.143210703212663 0.155514999540781 0.144289407365231 0.143828689765534 3 3|0 -|/ 6856025 6857003 6856495.9 6855843 6859040 - gene protein_coding_gene FALSE TRUE AT3G19740.1 ATPase similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G50140.1); similar to transitional endoplasmic reticulum ATPase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16461.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.176370812895082 -2.46432657907119 0.0376986820925504 1 3.12217082474060 15.7174176150393 -0.176370812895082 0.0337957898941911
AT4G26720_at 6.80540292129254 6.92376641882792 6.68531559925433 6.65990451678125 7.07245646372 6.50017967220795 6.73891616753023 7.30369652077727 6.49417049470232 6.46118441123621 6.18762107605764 6.28802274559073 6.56936320990968 6.07690875937888 6.15392587812232 6.05438554335058 6.12157622000328 6.01360926419814 6.7032066254547 0.152933492088626 0.151186294208009 0.150563848413688 0.146882140384798 0.154809624566264 0.148344926393974 0.151615247066425 0.152072331581592 0.159349377361046 0.14310133964701 0.149132677259619 0.151084188978253 0.145548479346205 0.157455582818993 0.151261521114731 0.153253244792074 0.164991333893055 0.152842876389520 0.155421170402820 4 4|0 -|/ 13470541 13471227 13470834.778 13470040 13472348 - gene protein_coding_gene FALSE TRUE AT4G26720.1 PPX1 (protein phosphatase x-1); protein serine/threonine phosphatase Encodes catalytic subunit of protein phosphatase X. Expressed at very low levels in A. thaliana flowers, leaves, stems and roots. Identical to Serine/threonine-protein phosphatase PP-X isozyme 1 (EC 3.1.3.16) (PPX1) [Arabidopsis Thaliana] (GB:P48529); similar to PPX2 (protein phosphatase x-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G55260.1); similar to hypothetical protein LOC394540 [Xenopus tropicalis] (GB:NP_988943.1); similar to Os09g0284200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062774.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.291579350418722 -2.46363770781758 0.0377400757534442 1 3.12118110493677 13.2042200004860 -0.291579350418722 0.140710917855657
AT3G29280_at 4.14552817037916 4.35176189434919 4.36725301241954 4.44050787512532 4.85265424311036 4.30506345220255 5.1378486422506 5.47043855559638 4.34389466949832 4.47714014285213 5.26426432298232 5.10686201047061 5.17211156822129 5.896415753945 4.98743520752859 5.01059358206599 4.82068998676073 5.39304853284851 4.38525991887881 0.206747386092600 0.1985617718352 0.198757476588393 0.1985617718352 0.215672825789255 0.208202850896329 0.22177628718132 0.205946859183202 0.1985617718352 0.1985617718352 0.1985617718352 0.202271357802293 0.202689990224851 0.211930286574391 0.203570621390226 0.201648267533019 0.208933616051434 0.200378189267025 0.206440375297572 3 3|0 -|/ 11237963 11239001 11238577.556 11237851 11239232 - gene protein_coding_gene FALSE TRUE AT3G29280.1 similar to Os03g0257000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049601.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95053.1) 0.259652353465203 2.46277734078447 0.0377918385765549 1 3.11994502178151 9.43814491285212 0.259652353465203 0.117163292037717
AT2G25450_at 12.2473912513637 12.4051884268055 12.4489714741521 12.3359875801369 12.6242912911669 12.2368892412443 12.6282656926542 12.5778917750473 11.1573265138411 12.2689903253909 12.0923376672328 11.7047898659125 12.2720635444378 12.3308723857469 11.4168197907784 11.8286345091161 12.4137609868313 12.3196938193444 11.2949334569341 0.102309999732337 0.0955195295553262 0.100163583207659 0.104492055642391 0.100109507360150 0.0990791803891424 0.10042182055054 0.0971635499685327 0.102522807166539 0.0962471319672808 0.0974964200532419 0.0987029549428268 0.0967507061098697 0.098377704282416 0.0999944644015928 0.0955195295553262 0.104750883952526 0.096200152112211 0.100497909828169 2 2 - 10837373 10837876 10837616.818 10836995 10838733 - gene protein_coding_gene FALSE TRUE AT2G25450.1 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT2G30830.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.210236041330178 2.46195488097241 0.0378413874378233 1 3.11876343017151 24.2486704265199 0.210236041330178 0.0754889732315825
AT1G76400_at 7.63234607070037 8.07479957870636 7.69364284316682 7.31531422631006 7.9547007000337 7.5040466036528 8.20494247054919 7.94931286708709 7.74554873371295 7.18832431503176 7.02313801989327 7.4733791973267 7.0036279910769 6.42268465293028 7.57928540505245 6.7486548342844 6.90331289040883 7.48517017921461 6.95934631887448 0.228827205290377 0.220215511791039 0.235047584643419 0.238233920737311 0.220428887248044 0.226208965846164 0.220194450369295 0.221447438508663 0.225933338252867 0.215082730459969 0.225359428817840 0.217514355259136 0.215263267144956 0.220178624026531 0.239496008878037 0.222299697788126 0.234887681060536 0.223554877650594 0.214939673020562 1 0|1 /|- 28663673 28664274 28664047.556 28663448 28666604 - gene protein_coding_gene FALSE TRUE AT1G76400.1 ribophorin I family protein similar to ribophorin I family protein [Arabidopsis thaliana] (TAIR:AT2G01720.1); similar to Os05g0301500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055134.1); similar to Ribophorin I [Medicago truncatula] (GB:ABE83243.1); contains InterPro domain Ribophorin I; (InterPro:IPR007676) -0.283128648201438 -2.46057743902398 0.0379245172487624 1 3.11678458753524 14.9799613877657 -0.283128648201438 0.134864249504483
AT3G10230_at 9.50870880971502 9.90980186320323 9.75691993359526 9.889452272832 10.0978133539239 9.59875960717553 10.6422738246116 10.8080268567262 10.3351013224254 10.4017220912875 10.3018145330138 10.1982933824154 10.4157081933482 10.4449771012925 9.79148742998186 10.7253082627441 9.8369193712208 10.0727714358775 10.3419136146513 0.117708978325774 0.112610118679989 0.120585398682330 0.114761524735724 0.112610118679989 0.131999847643436 0.116266649522156 0.116390667120258 0.128450987726137 0.116416513398393 0.112610118679989 0.112610118679989 0.112747051256839 0.118926959494844 0.118585645535674 0.112610118679989 0.132897771409306 0.113671158942128 0.115545256969495 3 3 - 3164379 3164836 3164623.545 3164080 3166043 - gene protein_coding_gene FALSE TRUE AT3G10230.1|AT3G10230.2 LYC (LYCOPENE CYCLASE); lycopene beta cyclase|LYC (LYCOPENE CYCLASE) Encodes a protein with lycopene β-cyclase activity. This enzyme uses the linear, symmetrical lycopene as substrate. However, unlike the ε-cyclase which adds only one ring, the β-cyclase introduces a ring at both ends of lycopene to form the bicyclic β-carotene. Identical to Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-) (LCY1) [Arabidopsis Thaliana] (GB:Q38933;GB:Q39145); similar to LUT2 (LUTEIN DEFICIENT 2), lycopene epsilon cyclase [Arabidopsis thaliana] (TAIR:AT5G57030.1); similar to lycopene cyclase (GB:AAA81880.1); similar to lycopene beta-cyclase allozyme 2 [Citrus sinensis] (GB:ABF69942.1); similar to lycopene beta-cyclase [Carica papaya] (GB:ABD91578.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Lycopene cyclase, beta and epsilon; (InterPro:IPR010108); contains InterPro domain Lycopene beta and epsilon cyclase; (InterPro:IPR008671)|Identical to Lycopene beta cyclase, chloroplast precursor (EC 1.14.-.-) (LCY1) [Arabidopsis Thaliana] (GB:Q38933;GB:Q39145); similar to LUT2 (LUTEIN DEFICIENT 2), lycopene epsilon cyclase [Arabidopsis thaliana] (TAIR:AT5G57030.1); similar to lycopene cyclase (GB:AAA81880.1); similar to lycopene beta-cyclase allozyme 2 [Citrus sinensis] (GB:ABF69942.1); similar to lycopene beta-cyclase [Carica papaya] (GB:ABD91578.1); contains InterPro domain Lycopene cyclase, beta and epsilon; (InterPro:IPR010108); contains InterPro domain Lycopene beta and epsilon cyclase; (InterPro:IPR008671) -0.258817796200151 -2.46023570853376 0.0379451693618117 1 3.11629366825658 20.3179640518186 -0.258817796200151 0.116727797623853
AT1G08570_at 8.62818001266524 8.59011834527615 9.03623295487639 8.9889549273672 9.23381258990942 8.97774026888368 8.89549848655315 9.08240307776021 7.82753583099466 8.1686068829253 7.8041596544202 7.45487258277883 8.52965840554462 8.08967498296603 7.12741351009723 8.73702715850469 9.02183721072877 8.10538961469019 7.96124832618706 0.168812636981099 0.156552861447505 0.161436016769517 0.161213734557449 0.160711325937909 0.162540791458637 0.158856993780927 0.161613824345359 0.171295858484108 0.159646416964368 0.156552861447505 0.165768102706879 0.158821003950014 0.160128434563079 0.165574319837573 0.163131512149302 0.166383114710665 0.162417683986793 0.167013511930521 1 1|0 +|/ 2713639 2714262 2714019.111 2712895 2714737 + gene protein_coding_gene FALSE TRUE AT1G08570.1|AT1G08570.2 thioredoxin family protein Identical to Thioredoxin-like 1 [Arabidopsis Thaliana] (GB:O64654); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G33270.1); similar to thioredoxin (GB:AAA33400.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.191546165646399 2.45971509914222 0.0379766535421217 1 3.11554578723727 16.9763931595791 0.191546165646399 0.0558594780715366
AT4G14190_at 5.17467278490153 5.0692976603639 5.01978752740397 4.50320961974516 5.49830250290738 5.42082699552853 5.59412147778764 5.16089495810833 5.11279609483755 5.52891986142563 4.49665055361081 4.59876332247009 4.41110349929802 4.81509897969356 4.95607584294766 5.05990171280762 5.37875891051193 5.01206812927555 5.03246280900021 0.169306779810379 0.172337015898815 0.173523962473227 0.172117895368446 0.169306779810379 0.173967516688062 0.169306779810379 0.181256268691998 0.182334521615847 0.174309365062069 0.169499036028677 0.169306779810379 0.182777724280788 0.171405815448466 0.177396787320083 0.169756041077024 0.182132747425602 0.182284898244301 0.177439721357567 4 4 - 8183695 8184090 8183917.909 8183539 8185182 - gene protein_coding_gene FALSE TRUE AT4G14190.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G42630.1); similar to pentatricopeptide repeat protein [Capsella rubella] (GB:ABA18107.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.261444347577491 -2.45892307208842 0.0380246022034303 1 3.11440802477582 10.2130286278007 -0.261444347577491 0.118847654103852
AT1G69340_at 8.96180903641742 8.96398169822745 8.96090780462901 8.80461132030296 9.31905498540003 9.06530881212 8.86201242044665 8.39151898949658 8.21557270406442 8.2248235059589 8.49061510004247 8.29702365703505 8.48326465894142 8.22502909624083 8.61902024682824 8.50150596079476 8.47532487746953 8.50558531315895 8.2367487301758 0.147758752189971 0.144178611059224 0.150287770844125 0.14662012624035 0.140888544475404 0.141154565650131 0.140927984573006 0.149194672703181 0.169599114952436 0.145456485317568 0.140778500672534 0.139980311145663 0.144813630923457 0.141199648995089 0.145516933444914 0.139110138431103 0.147354589588362 0.144527846633117 0.141527582334386 1 1|0 +|/ 26072152 26073121 26072647 26069387 26073484 + gene protein_coding_gene FALSE TRUE AT1G69340.1 appr-1-p processing enzyme family protein similar to appr-1-p processing enzyme family protein [Arabidopsis thaliana] (TAIR:AT2G40600.1); similar to appr-1-p processing enzyme family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53991.1); similar to Os10g0444400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064706.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Appr-1-p processing; (InterPro:IPR002589) 0.233298164106759 2.45888076101789 0.038027165390643 1 3.11434724488625 17.2538436803201 0.233298164106759 0.096381427526622
AT3G48740_at 11.0286658348238 11.0866634033383 11.8420048506119 11.9132361276907 11.8006201117334 11.5688327475819 11.1626627828351 11.3065589430543 10.3020873097034 9.84969545127632 9.21294497117582 9.37900888821 10.2383852174221 9.67253389962218 8.90930524585064 9.9777567664392 10.3227227825698 8.8805874910837 9.35710258353225 0.147138285697667 0.149917805640848 0.149206895336269 0.151503946480370 0.154882694776153 0.149775270269618 0.150135159324806 0.147773838685390 0.144249027506558 0.155838401681850 0.157454377868891 0.144889859680318 0.142499592935013 0.144043305429379 0.153059791721761 0.143424434661222 0.154221125515783 0.154594503398491 0.157514919129782 3 0|3 /|- 18063814 18064932 18064242.556 18063492 18065738 - gene protein_coding_gene FALSE TRUE AT3G48740.1 nodulin MtN3 family protein similar to MTN3 (ARABIDOPSIS HOMOLOG OF MEDICAGO TRUNCATULA MTN3) [Arabidopsis thaliana] (TAIR:AT5G23660.1); similar to MtN3 [Medicago truncatula] (GB:CAA69976.1); similar to Os12g0476200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066755.1); similar to Os11g0508600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067955.1); contains InterPro domain MtN3 and saliva related transmembrane protein; (InterPro:IPR004316) 0.186448130675495 2.45663427769383 0.0381635058915541 1 3.11112028641525 21.1688809865257 0.186448130675495 0.0498172349480278
AT4G15560_at 11.723772991677 11.6572264810783 11.5212632969593 11.4521422307786 11.7301963946011 11.5836800932003 12.2059542500636 12.0961643953875 12.3154612949593 12.2933901533286 12.3370826195893 12.3829070557881 12.1921295305892 12.1823466835123 12.3405184233783 12.4096991979649 12.1800024834912 12.4351248369997 12.3283034256169 0.0668101087549442 0.0644113554107963 0.071917852592664 0.0675753688584926 0.0646786245061748 0.069696706073432 0.06532674788764 0.0668046641763261 0.0690507193946459 0.0663680797310316 0.0642364377805288 0.0642364377805288 0.064821144271452 0.0680995837072045 0.066398312100041 0.0642364377805288 0.0675966138163673 0.0687003654964067 0.069356636403535 4 4 + 8886489 8887223 8886941.182 8883905 8887563 + gene protein_coding_gene FALSE TRUE AT4G15560.1 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis Identical to Probable 1-deoxy-D-xylulose-5-phosphate synthase, chloroplast precursor (EC 2.2.1.7) (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) (CLA1) [Arabidopsis Thaliana] (GB:Q38854;GB:O23407;GB:O49738); similar to DXPS3 (1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 3), 1-deoxy-D-xylulose-5-phosphate synthase [Arabidopsis thaliana] (TAIR:AT5G11380.1); similar to DXPS1, 1-deoxy-D-xylulose-5-phosphate synthase [Arabidopsis thaliana] (TAIR:AT3G21500.2); similar to DEF (GB:AAC49368.1); similar to 1-D-deoxyxylulose 5-phosphate synthase [Lycopersicon esculentum] (GB:AAD38941.1); similar to CLA1-like protein [Brassica rapa] (GB:ABE60813.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Deoxyxylulose-5-phosphate synthase; (InterPro:IPR005477); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Transketolase, N-terminal; (InterPro:IPR005474) -0.176933814860457 -2.45654877852332 0.038168704575959 1 3.11099747577783 24.0562306726594 -0.176933814860457 0.0357712816984737
AT3G46630_at 9.62628699798599 9.73622256725796 9.48958608624128 9.60278075677926 10.0625704729621 9.6243301490951 9.73502637732045 9.88054516944865 9.79207979179046 9.5016567251709 10.1593461334458 10.2538134837439 9.89526133183996 10.1321607978527 9.89953821385226 10.3819311325803 9.81145969702966 9.85760489418296 9.38889405064589 0.155076316257203 0.141734682599173 0.148757134671342 0.142073638065349 0.153537056987686 0.146188733763442 0.156898658165147 0.153334053872029 0.160732960647028 0.158906438034647 0.148441929257492 0.143205902012638 0.144171307885168 0.146206320220069 0.155688706480090 0.143586461732451 0.164505773199312 0.152944136055728 0.162352549601124 3 3 - 17192165 17193266 17192758 17191919 17193442 - gene protein_coding_gene FALSE TRUE AT3G46630.1 similar to defective chloroplasts and leaves protein-related / DCL protein-related [Arabidopsis thaliana] (TAIR:AT1G45230.1); similar to putative defective chloroplasts and leaves (DCL) protein [Oryza sativa (japonica cultivar-group)] (GB:AAQ56405.1) 0.219154596481522 2.45413513512028 0.0383157572769089 1 3.10753066792442 19.5245517303539 0.219154596481522 0.084448045176105
ATCG00340_at 13.5575589857180 13.7272300328459 14.1003383085716 13.7108924247472 13.7806127041233 13.4062094823189 13.5108607234849 13.473615450928 14.8290054572714 14.7423838606255 15.1324793997215 15.1546183576076 15.0922821653747 15.0255486784607 14.9257615674117 14.9237523352533 14.6267018952489 14.8485509024607 14.4641210810084 0.0575024588939549 0.0559702982852116 0.0576103952842032 0.0574873047426427 0.0562497482439664 0.0658685301544623 0.0580367899014656 0.059252643775593 0.059198811624142 0.0569372189484153 0.0566927486694636 0.0567613884452291 0.0566407657582471 0.0583900965605174 0.0574466302332952 0.0566535380981254 0.0598093811526806 0.0571590643144244 0.0588806174927632 C C - 37381 37894 37601.364 37375 39579 - gene protein_coding_gene FALSE TRUE ATCG00340.1 Encodes the D1 subunit of photosystem I and II reaction centers. Identical to Photosystem I P700 chlorophyll a apoprotein A2 (PsaB) (PSI-B) (psaB) [Arabidopsis Thaliana] (GB:P56767); similar to photosystem I P700 apoprotein A2 [Ranunculus macranthus] (GB:AAZ04114.1); similar to photosystem I P700 apoprotein A2 [Nandina domestica] (GB:YP_740649.1); similar to photosystem I P700 apoprotein A2 [Spinacia oleracea] (GB:NP_054932.1); contains InterPro domain Photosystem I psaB; (InterPro:IPR006244); contains InterPro domain Photosystem I psaA and psaB; (InterPro:IPR001280) 0.234952689043338 2.45342104385634 0.0383593726622118 1 3.10650504330489 28.4807724535893 0.234952689043338 0.0982031993349706
AT2G39450_at 9.7142223774022 10.1326982608113 9.63911557930104 9.71575598100437 10.452986301334 10.0955630528474 10.7157027256030 10.7489417839140 9.93272328771462 10.2820549958929 10.4101700687042 10.0278098198248 10.1905566787649 10.3455309375160 9.65800846530852 10.2206416896166 9.8537221933408 9.8007320441979 10.3144807661130 0.0997903922209114 0.0985561373480116 0.103998765869001 0.103092000945299 0.100096152542168 0.105923352834395 0.100678860925535 0.100804157422997 0.113567169609917 0.098806777461066 0.0993897546465895 0.0985561373480116 0.100001756033604 0.0991178003585846 0.101534200438622 0.100085002827086 0.110140437497523 0.105257055859728 0.0989809116349918 2 2|0 -|/ 16478829 16479411 16479146 16478710 16480896 - gene protein_coding_gene FALSE TRUE AT2G39450.1 cation efflux family protein similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT1G79520.1); similar to Os01g0837800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044741.1); similar to Os05g0461900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055764.1); similar to cation diffusion facilitator 10 [Stylosanthes hamata] (GB:AAO38709.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.232529627195942 -2.45142636214441 0.0384814683924587 1 3.10364027757406 20.2717813429769 -0.232529627195942 0.0963297605373543
AT1G65070_at 5.56734883480974 5.263996308021 5.19000268585094 5.28565124398028 6.0957348278929 5.8684684727711 5.87996727698854 5.51839047109768 5.6674032204274 5.95311971923104 5.1320913677156 5.56153436407532 5.41028475872858 5.22922940034417 5.2351316153787 6.01365089225936 5.72551571193378 5.61375008626586 6.37324880178347 0.180036996767825 0.171643901749363 0.175504256206550 0.172848701792467 0.173375778486553 0.185784994673865 0.176217464611923 0.172630634604687 0.176683620962189 0.185606633159902 0.174729342985063 0.170498452262516 0.185129996106488 0.186437273491807 0.175658560912566 0.173105340665209 0.175928552107732 0.176555971574995 0.181369020971322 1 1|0 -|/ 24176832 24177453 24177102.4 24176795 24179907 - gene protein_coding_gene FALSE TRUE AT1G65070.1 DNA mismatch repair MutS family protein similar to DNA mismatch repair MutS family protein [Arabidopsis thaliana] (TAIR:AT5G54090.1); similar to H0901F07.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86270.1); similar to OSJNBb0017I01.21 [Oryza sativa (japonica cultivar-group)] (GB:CAE05741.1); contains InterPro domain DNA mismatch repair protein MutS, C-terminal; (InterPro:IPR000432); contains InterPro domain MutS III; (InterPro:IPR007696) -0.227618402165867 -2.45127564288686 0.0384907098495629 1 3.10342382191316 11.3277312343773 -0.227618402165867 0.0921520853792812
AT3G20970_at 5.62310123357252 6.1968763090361 6.07795808475675 6.0144951583655 6.55935192274711 6.2073611412954 6.65265835993369 6.9030718893301 4.81113037079622 5.18572197325495 5.60166080570408 5.69490184857742 5.41906671740766 5.35391245401888 6.26370382993784 5.75334798904212 5.2836224778367 5.56821371668772 4.85706702163599 0.224120974179813 0.201186039624848 0.212317862241394 0.211317831635904 0.212523532943832 0.212305331830737 0.204858792922428 0.201901539203215 0.215343375148718 0.202855789179626 0.203814799183823 0.204029265815103 0.204854517335997 0.207537867983075 0.205974329968232 0.201186039624848 0.217789697381325 0.202835544610676 0.211601311373011 3 3|0 +|/ 7348697 7349769 7349004.3 7348203 7350311 + gene protein_coding_gene FALSE TRUE AT3G20970.1|AT3G20970.2 NFU4 (NFU domain protein 4) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU5 than to NFU1,2, and 3. Targeted to the mitochondrion. Identical to NifU-like protein 4, mitochondrial precursor (AtNfu4) (AtNfu-III) (NIFU4) [Arabidopsis Thaliana] (GB:Q9LIG6); similar to NFU5 (NFU domain protein 5) [Arabidopsis thaliana] (TAIR:AT1G51390.1); similar to Os05g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054690.1); similar to hypothetical protein UM04972.1 [Ustilago maydis 521] (GB:XP_761119.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) 0.268430951747793 2.45119779539618 0.0384954839955173 1 3.10331202155822 11.5636643549449 0.268430951747793 0.124773471834576
AT4G30470_at 4.25186614257751 4.92003073979316 5.03724726632999 5.68241891154697 5.99237363329966 5.24292794145324 5.99369739038881 6.58963007865782 7.04931846037409 6.75961598123753 8.5910539680957 7.42389010183783 7.77372280665617 8.50253039480149 7.41880004811055 6.84821541999119 6.50240813217544 7.38714529079238 6.46344578631781 0.284306400792547 0.273607154628585 0.267657518190207 0.272110338264050 0.269523137932119 0.299217062351091 0.272480677400250 0.26762259700482 0.269726366393115 0.266805211439612 0.268548440830429 0.264106311605729 0.268513498024917 0.277214719722642 0.262989568330753 0.264968717367416 0.275019619829682 0.281211460776648 0.26293737837013 4 4|0 +|/ 14894851 14896485 14895876.889 14894111 14896821 + gene protein_coding_gene FALSE TRUE AT4G30470.1 cinnamoyl-CoA reductase-related similar to cinnamoyl-CoA reductase-related [Arabidopsis thaliana] (TAIR:AT2G23910.1); similar to Ribosome-binding factor A [Medicago truncatula] (GB:ABE85146.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.42422327231713 2.45098056836715 0.0385088090011281 1 3.10300005337041 12.6204894361479 0.42422327231713 0.230850964501332
AT3G62310_at 6.38566243878622 6.69625762235637 6.00688055694591 6.17857376964866 7.02339874988397 6.61964028899057 6.79652508383583 6.8685909969485 6.33296380855268 6.49974973981449 6.27805032211069 6.74824002261006 6.14565931497689 6.32907609186015 6.42003981535501 6.57963004959482 5.98094438931 6.31372227829748 6.90372678477102 0.202348680715659 0.198367417554252 0.216193750722160 0.213383762837498 0.198367417554252 0.207132308394696 0.207569069463082 0.204874787925521 0.209376182563473 0.204107763713705 0.203696387812278 0.198398064164649 0.201587050489750 0.207161085307228 0.206892469662596 0.204822219208744 0.217147996057120 0.202858781793136 0.199943669143477 3 3 - 23068562 23069277 23068905 23068221 23071706 - gene protein_coding_gene FALSE TRUE AT3G62310.1 RNA helicase, putative similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G47250.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95605.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE87664.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL50218.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.229514426489728 -2.45030060193487 0.0385505490129042 1 3.10202354162122 13.0360580533714 -0.229514426489728 0.0938591955195111
AT1G77420_at 7.48199788177052 7.69143860741069 7.31261649198744 7.12659237347554 7.53408946222646 6.18896946972117 5.7368614840639 5.46232258626463 6.21922336219993 6.41194583122461 6.88332055070717 7.0761675615615 6.71433875980455 7.23588009295007 6.17060760132768 7.07903090842112 6.07456399830489 6.8210126248093 6.32948643166549 0.222879835769292 0.223393859155865 0.219790341585715 0.228972880768396 0.226219717284461 0.249098427977551 0.217176162218491 0.238273059288963 0.228714351960065 0.219257932825882 0.216276206500952 0.225344255992869 0.224557584558468 0.235588791664321 0.218886644731478 0.219530326352145 0.239052961238161 0.221521433396945 0.225651432844484 1 1|0 +|/ 29099510 29100289 29099970.4 29098393 29100610 + gene protein_coding_gene FALSE TRUE AT1G77420.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G16120.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE93241.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.442029265007162 2.44901361506543 0.0386296755619182 1 3.1001753375789 13.3554029465813 0.442029265007162 0.242473594970130
AT1G36160_at 8.12502756319786 8.23231578087888 8.00223868317993 7.47733452135732 8.86626078793802 8.72816528762408 9.28803612254019 8.88419238907125 8.97410708831824 9.39256924562928 9.67478685165755 9.42827031169614 9.04252095158887 9.03034753331773 9.16200867653397 8.99924868689328 8.42639322954284 9.18288680179704 9.45582313461216 0.166744438090603 0.161319290573657 0.172854178066431 0.181086852297748 0.155604370437069 0.171136171256019 0.155604370437069 0.160096707872141 0.163977854435160 0.162605200531558 0.160262578453790 0.155776404750052 0.160550808958440 0.158369549073347 0.163098291329956 0.155604370437069 0.177068980676901 0.163872542357125 0.159417757391755 1 1 + 13544328 13544735 13544520 13535377 13545220 + gene protein_coding_gene FALSE TRUE AT1G36160.1 ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase Encodes acetyl-CoA carboxylase. Mutant displays uncoordinated cell divisions which are enhanced by cytokinins. Mutant also has aberrant organization of the apical region in the embryo and abnormal root and shoot development. similar to MCCA (3-methylcrotonyl-CoA carboxylase 1) [Arabidopsis thaliana] (TAIR:AT1G03090.2); similar to acetyl-CoA carboxylase [Brassica napus] (GB:CAC19875.1); similar to acetyl-CoA carboxylase [Brassica napus] (GB:CAA54683.1); similar to acetyl CoA carboxylase (GB:AAA75528.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763); contains InterPro domain Acetyl-CoA carboxylase, central region; (InterPro:IPR013537); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Biotin carboxylase, C-terminal; (InterPro:IPR005482); contains InterPro domain Carboxyl transferase; (InterPro:IPR000022); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, N-terminal; (InterPro:IPR011762); contains InterPro domain Biotin carboxylation region; (InterPro:IPR011764); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) -0.259875876519337 -2.44795601320886 0.0386948210458305 1 3.09865660617132 17.6466835769226 -0.259875876519337 0.118538689114708
AT3G02900_at 6.5614351206884 6.48196209480709 6.043465749891 5.97138546758078 6.28682862493003 6.0259000908795 7.24883428570317 6.65717439613741 6.88031116794731 6.62943917236445 7.08752179773638 7.19407394772823 6.36895248965564 6.69825532712122 7.5618838187389 6.31811095326352 6.26427319647753 6.8219206585928 6.41165187393398 0.186196400177331 0.186599645615893 0.188711910269271 0.188809225933168 0.185907859658930 0.201841675627628 0.182618221861442 0.184356058637285 0.196048530277379 0.193669968128563 0.187783890309821 0.184428377892936 0.193060849919418 0.195563912674848 0.195449178714815 0.182770364170520 0.200405149138575 0.18759939592362 0.201786327025461 3 0|3 /|+ 646317 647407 646885.1 645817 647655 + gene protein_coding_gene FALSE TRUE AT3G02900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16660.1); similar to hypothetical protein [Plantago major] (GB:CAH59416.1) -0.253274936048995 -2.44780200672718 0.0387043166302080 1 3.09843545516284 13.1245439430336 -0.253274936048995 0.113434217331391
AT2G47450_at 10.1763179444574 10.1005632191335 9.95594379632623 9.81200051556277 10.0572093290684 10.0716946291724 10.3193399646762 10.6729791550876 11.5217701249362 11.2006840553963 11.5964513100201 11.445898086964 11.3454936123019 11.3116443491332 11.4075455114532 11.3459583561587 10.8264606002796 11.0343872290713 11.3204402774665 0.102231571418308 0.103504234692214 0.0991384983354005 0.106399905261475 0.105928823890135 0.108069081186918 0.102507265804519 0.101838739166601 0.109868554323111 0.0995812119433898 0.0993125849196045 0.0974267673203526 0.0974267673203526 0.0998595755222454 0.098535860553439 0.0977929535046393 0.113921580149387 0.109417678756046 0.0974267673203526 2 2 + 19480377 19480928 19480664.364 19479751 19481384 + gene protein_coding_gene FALSE TRUE AT2G47450.1 CAO (CHAOS); chromatin binding A component of the chloroplast signal recognition particle pathway that is involved in LHCP targeting. Downregulated in response to high light. Identical to Signal recognition particle 43 kDa protein, chloroplast precursor (CpSRP43) (Chromo protein SRP43) (CAO) [Arabidopsis Thaliana] (GB:O22265;GB:Q93V50;GB:Q940I7;GB:Q9SAU3); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G03430.1); similar to Probable signal recognition particle 43 kDa protein, chloroplast precursor (GB:Q8LSQ2); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Chromo; (InterPro:IPR000953) -0.200744803658226 -2.44479031818321 0.0388904790919999 1 3.09411094746001 21.4641867531135 -0.200744803658226 0.0674089450492195
AT4G31160_at 5.52829270213350 5.05694917280010 4.96618156948058 5.16647063465993 5.19119237351819 5.01892828628566 4.76490744205177 4.74604486518135 4.62453976980592 4.34638464717764 5.32349928747481 5.09321163733165 5.08639734680366 5.23074760761656 4.84901641856067 5.4009242434198 4.88546566644974 4.29137719255008 4.90306719613433 0.209328362736907 0.209328362736907 0.218628785072436 0.209328362736907 0.209328362736907 0.225714362972299 0.210754077681599 0.223537516837854 0.221409112944817 0.216619404954661 0.209328362736907 0.210516134811191 0.219102060908222 0.214355371365397 0.21961744070239 0.209328362736907 0.210206036130532 0.222663100028829 0.217285746265411 4 4 + 15152380 15152921 15152528.1 15145942 15153081 + gene protein_coding_gene FALSE TRUE AT4G31160.1 transducin family protein / WD-40 repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to Os04g0691200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054357.1); similar to B0518A01.3 [Oryza sativa (indica cultivar-group)] (GB:CAH68098.1); similar to OSJNBb0020J19.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE05773.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.228530362215494 2.4434739388376 0.0389721307615086 1 3.09222088773881 9.87724277879647 0.228530362215494 0.0935633999282883
AT2G37120_at 7.40854181688576 7.66902856777113 6.90584412381003 6.85564524420804 7.73006777842242 7.47638285975401 6.67423215809177 6.88847751676702 6.80924538304484 6.74558912912631 7.68179894673699 7.31715829835779 6.86365060218243 7.19836095921879 7.39566898874984 6.9802029416118 7.029414034002 7.01923413236792 7.00798805829397 0.169605941360785 0.165515900291249 0.176185761228811 0.168437788556956 0.166606001833874 0.162221165782858 0.181146099998113 0.176971781595208 0.184515570915841 0.170178032567933 0.169941201417737 0.175173544431603 0.176226649967185 0.165691955403288 0.167725055863615 0.164172720773934 0.162756674696509 0.177163813033814 0.171424220447745 2 0|2 /|- 15601336 15601499 15601428.222 15601109 15602040 - gene protein_coding_gene FALSE TRUE AT2G37120.1 DNA-binding S1FA family protein Identical to DNA-binding protein S1FA2 (S1FA2) [Arabidopsis Thaliana] (GB:Q42337;GB:Q9ZQC9); similar to DNA-binding S1FA family protein [Arabidopsis thaliana] (TAIR:AT3G53370.1); similar to DNA-binding protein S1FA (GB:P42552); contains InterPro domain DNA binding protein S1FA; (InterPro:IPR006779) 0.206663454709053 2.44329203033422 0.038983427600542 1 3.0919597099511 14.2210076597430 0.206663454709053 0.0735493287840196
AT2G27840_at 4.86759353504521 5.15577877104157 5.28123815110031 5.0160423086263 4.62859574518999 4.74138631570096 4.79981760391456 5.51758007320822 3.42218660062843 4.25344194353306 4.82176841956741 5.54834633538091 4.59347265432855 4.29602615769327 5.10192206399126 4.55944876695129 4.84958226743716 4.49465204888512 4.41604610648794 0.240499416279872 0.244584412198686 0.237661273262735 0.239675003193244 0.237661273262735 0.237661273262735 0.237661273262735 0.253770828936633 0.262338932399647 0.245759434411620 0.244109239033322 0.237661273262735 0.237661273262735 0.244338651180937 0.243025414135016 0.238444654452954 0.241065080646103 0.240045606612439 0.241057402326259 2 2|0 +|/ 11869781 11870759 11870109.7 11869071 11870963 + gene protein_coding_gene FALSE TRUE AT2G27840.1|AT2G27840.2 HDT4 (histone deacetylase 13) Belongs to the plant specific HD2 type proteins; similar to nucleolar Zea mays histone deacetylase; HD2-p39 Identical to Histone deacetylase 2d (HD-tuins protein 4) (HD2D) [Arabidopsis Thaliana] (GB:Q9M4T3;GB:Q9ZUY5); similar to HD2A (HISTONE DEACETYLASE 2A), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G44750.1); similar to Histone deacetylase 2a (HD2a) (ScHD2a) (GB:Q6V9I6); contains domain Glycosyl hydrolase domain (SSF51011) 0.292108628374113 2.44317315268575 0.0389908118869709 1 3.09178903052172 9.40785934105965 0.292108628374113 0.142839223089654
AT3G20250_at 8.73463033333919 8.84344234367198 9.05396118428197 9.06927581747065 9.3947668304111 9.15273922160024 7.75208094484706 7.73846210255414 7.72050496128128 7.62477884449855 6.98963407311834 6.62335236368087 7.94118975359334 7.57236045622028 6.15428396552566 7.49809423781428 7.74352578619242 7.20311230819288 7.90805288595396 0.175954765289709 0.175850004871000 0.174729199625777 0.172208789164054 0.175501927848790 0.179369321858693 0.174738331971110 0.163670886050073 0.188353149933455 0.168875192300085 0.163670886050073 0.169216485305841 0.176361275523143 0.179545420591207 0.172278197235575 0.169104902673658 0.176141377576792 0.176817262753789 0.179207243480991 3 3|0 -|/ 7059237 7060027 7059712 7058908 7063246 - gene protein_coding_gene FALSE TRUE AT3G20250.1 APUM5 (ARABIDOPSIS PUMILIO 5); RNA binding similar to APUM6 (ARABIDOPSIS PUMILIO 6), RNA binding [Arabidopsis thaliana] (TAIR:AT4G25880.1); similar to putative pumilio-family RNA-binding domain-containing protein(PPD1) [Oryza sativa (japonica cultivar-group)] (GB:BAD09696.1); similar to pumilio domain-containing protein PPD1 [Populus tremula x Populus tremuloides] (GB:AAF71823.1); similar to Os08g0519800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062262.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.182556859901116 2.44201234830197 0.0390629909991342 1 3.09012243439951 16.2008230215821 0.182556859901116 0.0460590206893877
AT4G17830_at 9.53050483693592 9.71127335041307 9.7507363037029 9.70069807667054 9.57626647396447 9.28068045097094 9.74476345846362 9.42264008349665 9.04061595590775 9.30601828757721 8.69434931901494 8.51149820502765 8.82198370042339 8.64933462578062 8.61986840834969 8.88806409633508 8.88627242927533 8.88705908962442 9.10507337402668 0.123114235287831 0.118739446724478 0.126437681053145 0.120510043502118 0.123356991645382 0.132379588048832 0.124493716814024 0.12489141134903 0.143028034652175 0.126027004478077 0.123047944388636 0.121921789762778 0.120546192560352 0.123621920415173 0.127097959915330 0.121340901617843 0.120994119517764 0.127542102128158 0.119482019288807 4 4|0 +|/ 9917041 9917990 9917496.125 9915844 9918256 + gene protein_coding_gene FALSE TRUE AT4G17830.1 peptidase M20/M25/M40 family protein similar to DIP-1 [Citrullus lanatus] (GB:BAA95409.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65618.1); similar to acetylornithine deacetylase, putative [Brassica oleracea] (GB:ABD65173.1); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain Peptidase dimerisation; (InterPro:IPR011650) -0.215482788804213 -2.43891998242124 0.0392559298273776 1 3.08568297738336 18.5373818493603 -0.215482788804213 0.0823266790679783
AT1G70060_at 6.20286081379816 6.2733493220443 6.92782961291967 6.46153658770881 6.99326052799892 6.8240766025737 7.06520557927984 5.26208783020375 3.81010898078921 5.64029174065587 6.32222243843165 5.39437126626808 5.7718813219997 5.4194076678755 4.91226422936716 5.95311386615507 6.25582842547404 4.82055195126025 5.75499776292333 0.266367387841392 0.264099466581319 0.264039326293138 0.265056158996994 0.264039326293138 0.271577566616090 0.264387915401378 0.279167927952889 0.292766348109994 0.270379297538954 0.273871078855978 0.264325191849196 0.267528051433303 0.27138820473875 0.26991911384009 0.272144705853160 0.281877504770043 0.298960343473042 0.269584759801197 1 1 + 26392482 26393206 26392765.6 26387452 26393579 + gene protein_coding_gene FALSE TRUE AT1G70060.1 paired amphipathic helix repeat-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01320.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to transcriptional repressor protein-related [Musa balbisiana] (GB:ABF70137.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE86951.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.569269465433279 2.43785487420359 0.0393226050711122 1 3.08415400101521 11.8386115132209 0.569269465433279 0.323859892374554
AT4G39400_at 9.39111196371983 9.38720275886693 9.20842818359767 9.20957373189828 9.5264478667504 9.48842928273759 9.17074040039546 9.3241981290419 10.2548437677183 9.91961543924807 10.7559013131396 10.4903424432657 10.7433830191875 10.4794308469397 10.6156107455435 10.3447127937132 10.2061596451084 10.1840778750862 10.3504514718335 0.0684802648044707 0.0688889726640789 0.0739832090601423 0.0713239950451769 0.0668953950522702 0.0715140225506246 0.0685390449690588 0.0676571894740427 0.0723620353864799 0.0712208838471357 0.070143751892934 0.0681973764663873 0.0682181693231592 0.0760810493911504 0.0704391544798848 0.0684370045286834 0.0702845894818909 0.0698060506755234 0.0698797714779297 4 4 + 18327814 18328297 18328061.182 18324655 18328820 + gene protein_coding_gene FALSE TRUE AT4G39400.1 BRI1 (BRASSINOSTEROID INSENSITIVE 1); kinase Encodes a plasma membrane localized leucine-rich repeat receptor kinase involved in brassinosteroid signal transduction. BRI1 ligand is brassinolide which binds at the extracellular domain. Binding results in phosphorylation of the kinase domain which activates the BRI1 protein leading to BR responses. Residue T-1049 and either S-1044 or T-1045 were essential for kinase function in vitro and normal BRI1 signaling in planta. Although BAK1 and BRI1 alone localize in the plasma membrane, when BAK1 and BRI1 are coexpressed, the heterodimer BAK1/BRI1 they form is localized in the endosome. Identical to BRASSINOSTEROID INSENSITIVE 1 precursor (EC 2.7.11.1) (AtBRI1) (Brassinosteroid LRR receptor kinase) (BRI1) [Arabidopsis Thaliana] (GB:O22476); similar to BRL3 (BRI1-LIKE 3), protein binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G13380.1); similar to BRL1 (BRI 1 LIKE), kinase [Arabidopsis thaliana] (TAIR:AT1G55610.1); similar to BRL2 (BRI1-LIKE 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G01950.1); similar to brassinosteroid receptor [Pisum sativum] (GB:BAC99050.1); similar to Protein kinase [Medicago truncatula] (GB:ABE81680.1); similar to Systemin receptor SR160 precursor (Brassinosteroid LRR receptor kinase) (GB:Q8L899); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.171194281110655 2.43694766716155 0.0393794853242238 1 3.08285173967654 19.6644778203833 0.171194281110655 0.0273685178690715
AT3G25560_at 4.51517796761094 4.81436885151106 5.09037845903249 5.16015325496754 5.39096369557142 5.14975365254934 6.83065403684185 7.14257116072882 5.36786835272191 7.08739256286244 6.7353058741804 6.92173571030012 5.99956011030999 6.40824035538039 6.24265931024965 6.70276581646496 6.93233334474835 6.90438826345282 6.79804309590398 0.210276206165263 0.199632638306272 0.205853011587826 0.196020874222725 0.198499688829143 0.197278650201886 0.204661072002434 0.199301829594751 0.213524889606978 0.201127927786894 0.194183906640209 0.207230889229514 0.200524365425043 0.210232947575515 0.201279068986581 0.194738652615265 0.214918652833396 0.202024078556280 0.198135880079954 3 3 - 9280937 9281579 9281281.636 9280750 9283925 - gene protein_coding_gene FALSE TRUE AT3G25560.1|AT3G25560.2 NIK2 (NSP-INTERACTING KINASE 2); protein kinase similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to NIK3 (NSP-INTERACTING KINASE 3), kinase [Arabidopsis thaliana] (TAIR:AT1G60800.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96908.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.219887572168290 -2.43691597391522 0.0393814739245595 1 3.08280624598819 12.0235734358343 -0.219887572168290 0.0865028038462286
AT1G22910_at 5.59374182945445 6.09614340160971 5.86267302227066 6.11264450300405 6.13725403568916 6.22505741268339 6.51782240992283 7.08950500818154 5.23747102129335 5.56149065816405 6.2173726366648 6.49220458955018 6.44940756942788 6.90955316380313 6.23018660490581 6.06034908567843 5.48928698587789 6.20070984095925 5.52999035682283 0.233584421360428 0.215686058071386 0.239592421967057 0.234421639064836 0.215078296294964 0.232846079211363 0.220434420818449 0.232999931001683 0.224904071697204 0.219549418028941 0.225940748898335 0.217280731909402 0.228111601980708 0.221136306224385 0.215078296294964 0.219604819052558 0.243251959827251 0.225102026159887 0.224399789923725 1 1|0 +|/ 8106135 8107447 8106927.875 8105578 8108153 + gene protein_coding_gene FALSE TRUE AT1G22910.1|AT1G22910.2|AT1G22910.3 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to Os01g0958500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045454.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G33470.2); similar to Os01g0876800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044971.1); similar to Os01g0958500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045454.1); similar to RNA-binding re (GB:ABE82599.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.286626939317350 2.43636083169366 0.0394163227886518 1 3.08200938218931 12.0539141137029 0.286626939317350 0.139459245195269
AT1G04510_at 6.91067664796163 7.27059606004014 7.24951346204543 6.85110328787122 7.49031943455647 7.17248833551664 7.46274369556332 7.66500812804093 6.10451850782323 5.88825015569464 5.53267443728727 6.12072383086843 6.0022813970369 5.91477655595588 5.89858193352752 5.8474995101912 5.28515558383029 5.52146643468849 6.40705202098553 0.221816737912541 0.218439457289841 0.226152222579707 0.224535430212159 0.222970482837367 0.219565932152905 0.227062473217146 0.219584243598652 0.220381596973505 0.225255271938854 0.218582597490038 0.222384403798896 0.221714703834622 0.22474198320361 0.227318631755472 0.218415043372353 0.235685053714548 0.224059974181722 0.221802174880335 1 0|1 /|+ 1229549 1230487 1230008.125 1226574 1230826 + gene protein_coding_gene FALSE TRUE AT1G04510.1|AT1G04510.2 transducin family protein / WD-40 repeat family protein|nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G33340.2); similar to Os10g0466300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064804.1); similar to hypothetical protein MtrDRAFT_AC146759g5v1 [Medicago truncatula] (GB:ABE87995.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain U box; (InterPro:IPR003613) -0.252139301990976 -2.43594486264438 0.0394424553661032 1 3.08141230118252 13.2083903924117 -0.252139301990976 0.113505940324384
AT4G02030_at 7.4779457263726 7.74176803839841 7.12133539752377 7.30108204729574 7.76520969748872 7.01188388927963 7.53317586257403 7.03274085061559 6.95889622909674 6.89261685857753 6.61374103483949 6.95265092925423 6.59880020481189 5.86462822401206 6.29038116884669 6.50933440454805 6.25633193081342 6.4313540522805 6.97205558343758 0.210034813121521 0.201813319730425 0.217391523562949 0.205661045358930 0.201813319730425 0.208704249931002 0.205273051278221 0.207711551980800 0.214441001536798 0.209099826469593 0.202272009760642 0.205468207876968 0.209021491275785 0.218690468250890 0.212094085051314 0.205530699368638 0.215750744010129 0.210826804398234 0.210669704358228 4 4|0 +|/ 896287 897095 896764.8 892176 897318 + gene protein_coding_gene FALSE TRUE AT4G02030.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21170.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAR07074.1); similar to Os03g0737800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051205.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP03421.1); contains domain FAMILY NOT NAMED (PTHR15954); contains domain SUBFAMILY NOT NAMED (PTHR15954:SF2) -0.324033337477343 -2.43577059930056 0.0394534083387846 1 3.08116216664983 14.0635638390501 -0.324033337477343 0.165974313373681
AT3G47620_at 8.82528471412051 9.21024275366503 8.66095678431961 9.01053567383066 9.65092462548626 9.26787858952479 9.25383509895069 9.00385120861834 8.53170470340057 8.7232172545703 9.42147103232906 9.28331573305587 9.48321006818295 9.26552184577352 8.93837426992278 9.31981963545403 9.31603321146267 8.23622266241563 8.88090696691352 0.111961758520352 0.106089768432775 0.110661888794572 0.107673127923139 0.107156891617440 0.110732663064389 0.109980749460375 0.108364212567091 0.120556762796853 0.109870226658481 0.107926592533088 0.109188926957181 0.107761509736567 0.112151355082380 0.106089768432775 0.107234324383966 0.112220874160506 0.114613276926011 0.108936642337159 3 3 + 17570925 17571367 17571149.091 17569834 17571752 + gene protein_coding_gene FALSE TRUE AT3G47620.1 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G69690.1); similar to TCP-domain protein [Antirrhinum majus subsp. majus] (GB:CAE45599.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.260161778407392 2.43465093564627 0.0395238553247048 1 3.07955505884663 18.0454081972075 0.260161778407392 0.119847608182922
AT1G21590_at 9.24483638221321 9.4420193151792 8.98426594027983 8.7909628618776 9.29983086079016 8.88690138176264 9.1840269163682 9.24746693302428 8.97666719554259 8.85327249153793 8.59488067910196 9.11838316565391 8.92821123989924 8.66374905020463 8.61494965102436 8.93587344288748 8.67558341084892 8.54418077124439 8.89980383963083 0.123256141552002 0.132149101984034 0.128433169886566 0.131951084517575 0.127606472470364 0.133823196524554 0.125965057801813 0.124899407874512 0.130802910805260 0.119819172948461 0.126099467713136 0.122864082121701 0.123037289013967 0.130842154600083 0.131652678758531 0.122813561676831 0.141052879751258 0.129164269729 0.127873785568682 1 1 - 7566605 7567459 7566936.545 7566221 7569890 - gene protein_coding_gene FALSE TRUE AT1G21590.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G77280.1); similar to At5g63940 [Oryza sativa (japonica cultivar-group)] (GB:AAX96058.1); contains InterPro domain UspA; (InterPro:IPR006016); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.219767604032164 -2.43361706993961 0.0395890160485917 1 3.0780711591699 17.9697342915678 -0.219767604032164 0.0866626551254864
AT3G09850_at 9.15464392692586 9.26647284862743 9.16711096668194 9.3392571687943 9.40354789669383 9.22127423887224 9.41947128796867 9.4591762140771 9.70365125421205 9.62149614747332 9.31466492514864 9.13535422064206 9.28367275530073 9.30760094740758 9.04891344506045 9.4042751535784 9.4533212790734 9.38986623333406 9.52507514758056 0.0894146587880811 0.0860480375150169 0.087158606515339 0.0857762247194906 0.0896845494809042 0.0884587849996522 0.0876431545711679 0.0858277873160591 0.100583903709680 0.089156124777557 0.0904398369868051 0.087540398409564 0.086046003020433 0.086518074783528 0.091970884475642 0.086086763281822 0.091693946495596 0.0942301435082876 0.086066117715624 3 3 - 3023424 3023875 3023589.545 3023216 3025856 - gene protein_coding_gene FALSE TRUE AT3G09850.1 D111/G-patch domain-containing protein similar to D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G17070.1); similar to Tuftelin-interacting protein TIP39, contains G-patch domain (ISS) [Ostreococcus tauri] (GB:CAL55018.1); similar to Os08g0288500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061456.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.183337865725665 -2.43358205242775 0.0395912249570801 1 3.07802089977998 18.7583440534294 -0.183337865725665 0.0480020666444533
AT3G55140_at 6.8495418588774 7.09623135218415 6.18049887663681 6.0170165865248 6.73040695414405 6.83471474523304 6.88826447775852 7.02922662905793 6.62311919204924 6.7199799654813 6.91041547049565 6.98334003978581 7.17791991691161 7.08730576814749 6.86797302264901 6.8575638950085 6.4314550278775 6.79249874693802 6.90265473220713 0.235075785914204 0.226152301983082 0.232771228375656 0.233374045929515 0.226152301983082 0.234751620664956 0.234649300808344 0.234853929128732 0.240491076400117 0.229411248525453 0.231307867025254 0.226152301983082 0.227995784795072 0.226152301983082 0.235607730857106 0.226152301983082 0.256239901152163 0.23099714542391 0.228765729969479 3 3|0 +|/ 20450368 20451170 20450866.111 20449749 20451406 + gene protein_coding_gene FALSE TRUE AT3G55140.1|AT3G55140.2 pectate lyase family protein similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G09540.1); similar to Os01g0546800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043284.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD73403.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022)|similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G09540.1); similar to Os01g0546800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043284.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD73403.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.192591216385339 -2.43300434809953 0.0396276844460615 1 3.07719175060625 13.5218094929967 -0.192591216385339 0.059529951313346
AT3G16500_at 6.49670290356018 6.77038940542211 5.54790150731895 5.72092604801665 6.7213355750648 6.03087153551529 6.40929774361078 6.59186220847654 5.41645651441257 5.71607057738756 5.42275617506138 5.92141103719915 5.73611376962369 5.1181775416738 5.31861953098821 5.62734770441306 5.6190380823653 5.60820030470838 5.50768853483334 0.214608488803580 0.210280479299863 0.221324346459214 0.213272019762716 0.219294369089518 0.220039776875971 0.214697075008551 0.213340777130134 0.220247292251802 0.217929021593555 0.220656314779900 0.220693071600135 0.213686338920516 0.238652133436971 0.217853680491477 0.210280479299863 0.228945521923727 0.221753589427435 0.215597505839132 3 3|0 -|/ 5613441 5613980 5613717.222 5612506 5614416 - gene protein_coding_gene FALSE TRUE AT3G16500.1 PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1); transcription factor phytochrome-associated protein 1 (PAP1) Identical to Auxin-responsive protein IAA26 (Indoleacetic acid-induced protein 26) (Phytochrome-associated protein 1) (IAA26) [Arabidopsis Thaliana] (GB:Q8LAL2;GB:Q9LK75;GB:Q9ZSY7); similar to IAA18 (indoleacetic acid-induced protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51950.1); similar to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (GB:P0C127); similar to Os02g0228900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046357.1); similar to Os05g0523300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056086.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) -0.281042461372757 -2.43253773310276 0.0396571575461613 1 3.07652205505476 11.8327591461058 -0.281042461372757 0.135703125706390
AT4G37000_at 10.0499550028302 10.0967874803299 10.2362267971749 10.2347579627296 10.4635838568609 10.2609465604282 10.77485383788 10.779604617178 10.0399935855958 10.3895895169198 10.676567039251 10.5214464408777 10.8802586708927 10.7774263714018 10.4910525220443 10.8276603326666 10.7544171362853 10.7651251100161 10.2746751112715 0.0813056012369006 0.0789896927323656 0.0853163828331084 0.0824449939722459 0.0804725831782015 0.0847500151238707 0.0791048027777894 0.0788201971033961 0.0906698756879672 0.079626593749803 0.0796365284503022 0.0793600524408805 0.0793705744963087 0.0809801071330054 0.0791468286062698 0.0787103850884439 0.0885457512530983 0.0820720675027618 0.0793682342083209 4 4 + 17443263 17443695 17443407.636 17442606 17443849 + gene protein_coding_gene FALSE TRUE AT4G37000.1 ACD2 (ACCELERATED CELL DEATH 2) Mutants have spontaneous spreading cell death lesions and constitutive activation of defenses in the absence of pathogen infection. Its product was shown to display red chlorophyll catabolite reductase (RCCR), which catalyzes one step in the breakdown of the porphyrin component of chlorophyll. The enzyme was further assessed to be a Type-1 (pFCC-1-producing) RCCR.Upon P. syringae infection, ACD2 localization shifts from being largely in chloroplasts to partitioning to chloroplasts, mitochondria, and to a small extent, cytosol. Overexpression of ACD2 delayed cell death and the replication of P. syringae. Identical to Red chlorophyll catabolite reductase, chloroplast precursor (EC 1.-.-.-) (RCC reductase) (AtRCCR) (Accelerated cell death protein 2) (RCCR) [Arabidopsis Thaliana] (GB:Q8LDU4;GB:O23185); similar to red chlorophyll catabolite reductase [Brassica napus] (GB:CAJ80767.1); contains InterPro domain Red chlorophyll catabolite reductase; (InterPro:IPR009439) 0.175285012372125 2.43180931226314 0.0397032111828735 1 3.07547663333126 20.8353379848557 0.175285012372125 0.0360019764242766
AT3G15260_at 7.21892089616605 7.1136230401083 6.86548077033226 7.0159149619697 7.00177961630528 6.68240518653056 6.64433078399132 6.27237559987648 6.0496029516336 6.3616192073382 6.28068482499213 6.2190494558302 5.69505211308334 5.92610651926052 5.40596614593925 5.89667039897344 5.6550356908201 5.08930166561623 6.48278592584043 0.196905234285892 0.206195900799141 0.203882217844467 0.206025199406735 0.201963199501427 0.202937664700052 0.197764543722113 0.199652014467729 0.207984234603553 0.205380588469793 0.20083874706749 0.202365530512332 0.206293145682999 0.214832225696946 0.197824098569981 0.200462850028980 0.204988501591325 0.204460022008068 0.210005071025634 3 0|3 /|+ 5139682 5140217 5139940.778 5138693 5142651 + gene protein_coding_gene FALSE TRUE AT3G15260.1|AT3G15260.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G28400.1); similar to protein phosphatase type 2C [Lotus japonicus] (GB:AAD17805.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.223968394687047 -2.43112508341621 0.0397465196505625 1 3.07449466112926 12.8863468802859 -0.223968394687047 0.0905968469734777
AT2G34310_at 9.26556156473629 9.4632143003006 9.50192423109043 9.40483395592603 9.9190593194787 9.50127280757974 10.3654602244858 10.5144677053064 9.53515290921095 10.0163350689785 9.68148899855496 9.40650925186525 9.63822725978485 9.82096208734528 9.38229811211643 9.73735244414299 9.78165593766174 9.45454455343715 9.63657785896392 0.112494697567958 0.110594580325838 0.122546839261868 0.120014759429013 0.109782546330325 0.127828665232950 0.107078287843490 0.112471237325445 0.132984135952669 0.108806556505688 0.109921188103766 0.108961116376529 0.114106404639986 0.11769368519382 0.108364692256159 0.108952421332353 0.132593417809015 0.116061616593005 0.108083654240942 2 2|0 -|/ 14485678 14486292 14486007.5 14484794 14487041 - gene protein_coding_gene FALSE TRUE AT2G34310.1|AT2G34310.2|AT2G34310.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29530.1); similar to expressed protein, putative [Medicago truncatula] (GB:ABE81136.1) -0.218439409313049 -2.43071467522608 0.039772519271736 1 3.07390567507421 19.4130918184454 -0.218439409313049 0.085699969144063
AT1G13980_at 7.66073112115778 8.26422905820883 7.47804392529408 7.35568062872206 7.87755530417737 7.69073903375881 7.31879695791985 7.6305636158204 7.99767681084088 7.95305868553687 7.9633732303165 8.08119374005848 7.40029518793955 7.42692179565843 7.29938923819895 7.8496564764276 7.34354475328039 7.69991449343672 8.18119695638066 0.177691166368973 0.174623456100111 0.190620112601615 0.190655530630873 0.179791737753441 0.19118269743608 0.18522674571321 0.179916336176909 0.185910428950205 0.186145379922792 0.177031711146802 0.174282360073300 0.185049347450574 0.184079498173754 0.175788243827027 0.182787648462311 0.202630064939061 0.187212867772161 0.175602591291103 1 1 + 4793815 4794344 4794085 4788556 4794651 + gene protein_coding_gene FALSE TRUE AT1G13980.1 GN (GNOM) Encodes a GDP/GTP exchange factor for small G-proteins of the ADP ribosylation factor (RAF) class, and as regulator of intracellular trafficking. Homologous to Sec7p and YEC2 from yeast. Involved in the specification of apical-basal pattern formation. Essential for cell division, expansion and adhesion. Identical to Pattern formation protein EMB30 (EMB30) [Arabidopsis Thaliana] (GB:Q42510;GB:Q38883); similar to sec7 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19610.1); similar to pattern formation protein, putative [Arabidopsis thaliana] (TAIR:AT5G39500.1); similar to putative pattern formation protein GNOM [Oryza sativa (japonica cultivar-group)] (GB:BAD15695.1); similar to H0207B04.10 [Oryza sativa (indica cultivar-group)] (GB:CAH65909.1); similar to GNOM gene product (GB:AAA91150.1); contains InterPro domain SEC7-like; (InterPro:IPR000904) -0.264508417563431 -2.42778035207757 0.0399589077400186 1 3.069694824981 15.4980492549661 -0.264508417563431 0.123740898221795
AT1G16170_at 5.9671812248965 6.7900531639046 6.23632551068828 6.4117524798951 7.48571912348944 6.98752179336814 7.50972828924739 7.730198036213 8.45805140030028 7.77982013185657 8.22461362274522 7.7289852186393 7.8291765172473 7.91684181524792 7.40237220822663 7.61301721171864 7.28441339631034 7.71897924119204 8.2516265691574 0.225342221941750 0.200725630757633 0.222435716890578 0.215363668817126 0.200930704139961 0.205375329449754 0.212025500258123 0.200725630757633 0.206383184809592 0.20079069389235 0.210196507916496 0.203784791147002 0.205238962761599 0.207234032045308 0.200725630757633 0.205013190537607 0.206092050139055 0.204616242164015 0.202558555668455 1 1 - 5538882 5539122 5538994.182 5538726 5539790 - gene protein_coding_gene FALSE TRUE AT1G16170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79660.1); similar to Os08g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061402.1) -0.333663290780311 -2.42656245536883 0.0400365254378654 1 3.06794723999034 14.8287929215565 -0.333663290780311 0.173460894772677
AT2G29390_at 6.43495863774348 6.32826168308824 5.91694631200997 5.91352789330947 6.43477617553999 6.48142531020902 6.7213079279578 6.58188883175718 6.23618376995012 6.4169088343468 6.87873106497219 7.16843281553398 7.18515783160455 7.05132061121001 6.74700694107046 6.83173551648924 6.9786067996106 6.70580268699415 6.15331343980403 0.208057953323136 0.213695603911522 0.226273392733187 0.208057953323136 0.208675508662344 0.217296427634276 0.210789093465501 0.212298960793945 0.233628871091441 0.212735286649383 0.216265800651085 0.212117978858407 0.211597357718323 0.208057953323136 0.219619855987787 0.208057953323136 0.221664205250131 0.216052294935582 0.211585330246729 2 2|0 -|/ 12617990 12618798 12618383.111 12617620 12619971 - gene protein_coding_gene FALSE TRUE AT2G29390.1|AT2G29390.2|AT2G29390.3|AT2G29390.4|AT2G29390.5 SMO2-1 (sterol 4-alpha-methyl-oxidase 1); C-4 methylsterol oxidase|SMO2-1 (sterol 4-alpha-methyl-oxidase 1) Encodes a sterol 4-alpha-methyl-oxidase, specifically a 4-alpha-methyl-delta-7-sterol-4alpha-methyl-oxidase. similar to SMO2-2 (sterol 4-alpha-methyl-oxidase 2), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT1G07420.1); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088)|similar to SMO2-2 (sterol 4-alpha-methyl-oxidase 2), C-4 methylsterol oxidase [Arabidopsis thaliana] (TAIR:AT1G07420.2); similar to putative sterol 4-alpha-methyl-oxidase [Gossypium arboreum] (GB:AAO13795.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.172305960682888 2.42490584281787 0.0401423454307212 1 3.06557026279908 12.9577122455199 0.172305960682888 0.0314415854909781
AT1G76090_at 4.99027386146363 5.63795356071935 3.67375086972411 3.96899895901867 4.83448819204234 5.00780091522038 3.00689764968396 3.20455587216263 7.59136996331931 3.11989787123943 7.95863535935302 5.47859024177242 4.9389393463649 5.78328728857627 7.12937815489251 3.69024950908814 2.8740045612727 4.55602334568007 4.03103793280225 0.266394430075896 0.257305233482778 0.257582770265407 0.257305233482778 0.263220422259841 0.275839610888704 0.259051471848730 0.262970676292758 0.274423099821801 0.257305233482778 0.257466098056674 0.257305233482778 0.257305233482778 0.257305233482778 0.261992887695173 0.257305233482778 0.263692945472501 0.265804147063564 0.260219976568445 1 1 - 28555529 28556041 28555852.455 28555303 28556675 - gene protein_coding_gene FALSE TRUE AT1G76090.1 SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3); S-adenosylmethionine-dependent methyltransferase Encodes S-adenosyl-methionine-sterol-C-methyltransferase, an enzyme in the sterol biosynthetic pathway. Identical to 24-methylenesterol C-methyltransferase 3 (EC 2.1.1.143) (24-sterol C- methyltransferase 3) (Sterol-C-methyltransferase 3) (SMT3) [Arabidopsis Thaliana] (GB:Q94JS4;GB:O23655); similar to SMT2 (STEROL METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT1G20330.1); similar to S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum] (GB:AAB62808.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Sterol methyltransferase C-terminal; (InterPro:IPR013705) 0.274188025707663 2.42445377680346 0.0401712708336308 1 3.06492164572894 9.39821018416872 0.274188025707663 0.131312631384515
AFFX-r2-Ec-bioC-5_at 10.1557436890495 10.3366866301744 10.6900248324141 10.4800511497798 9.98994793753837 10.2556978956844 10.2489462185096 10.2375878610491 0.355406671393689 1.03455652242979 0.743935183187257 0.924757786846942 0.958495855478341 1.41610500320053 1.26048205208472 1.18613108814378 1.06133483593360 0.424498214422778 0.739975843173198 0.264303723075696 0.267230457037887 0.268775319977469 0.265429537645622 0.265572264705118 0.267702383446716 0.26426208659027 0.267054546243558 0.259901911155494 0.272709614825018 0.258615534223615 0.264335924588862 0.268533271938848 0.265650324714317 0.290435550747904 0.253817240270696 0.275704041998752 0.256003936438658 0.253305984196897 NA NA NA NA NA FALSE FALSE 0.198088588785937 2.42309438182537 0.0402583774447922 1 3.06297127574505 11.1528093674805 0.198088588785937 0.0664812297410877
AT4G29530_at 4.98442826826288 4.93264802752155 4.75621139748485 4.57924265195983 5.02071958463445 5.13226713607803 4.52586021967157 4.67806983738328 5.1258351135604 4.86108155591557 4.729212352708 4.30829279241017 4.48581314638622 4.43601603577767 4.86871404363137 4.1225271166452 4.59620966440806 4.11116086170811 4.74547354107461 0.215144211744045 0.214621275257093 0.217153297698890 0.21564374979906 0.225649228082697 0.220806821349563 0.215812321296284 0.218023993484253 0.221483647310764 0.218408623194369 0.210619365311139 0.215913380589308 0.213596283270074 0.215415629361492 0.223231096122519 0.210367549538408 0.219493849671592 0.216925950297249 0.213629219105427 4 4 + 14496676 14497264 14496922.091 14496085 14497460 + gene protein_coding_gene FALSE TRUE AT4G29530.1 2,3-diketo-5-methylthio-1-phosphopentane phosphatase family similar to phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT1G17710.1); similar to putative phosphatase [Solanum lycopersicum] (GB:CAD30863.1); contains InterPro domain HAD-superfamily hydrolase subfamily IB, PSPase-like; (InterPro:IPR006383); contains InterPro domain HAD-superfamily subfamily IB hydrolase, hypothetical 1; (InterPro:IPR006384) -0.180847440405687 -2.42294450848175 0.0402679925232381 1 3.06275625366734 9.51020088465433 -0.180847440405687 0.0456581549933607
AT3G16750_at 5.98382760782328 5.96290932282295 5.8615363626082 5.49636478036684 5.9922595691329 5.57057370792256 5.39469588519543 6.00223044760613 5.97428142511326 6.64600552735955 6.29205011006619 6.3437716776617 6.0866658011133 6.21207540733502 5.73431186505064 6.80773863834265 6.1475057451211 5.78464242302462 7.32750371983091 0.242631619300991 0.230674502161377 0.232501100536897 0.239589226372086 0.239114123849292 0.246144023621492 0.232862825586511 0.245553491236626 0.247473570154959 0.234358212730545 0.233306897114878 0.231540494519205 0.234570526645930 0.235634285907034 0.247732912047244 0.228814640976794 0.237446780374988 0.238800523905229 0.228814640976794 3 3|0 -|/ 5701280 5701754 5701526.7 5701020 5702330 - gene protein_coding_gene FALSE TRUE AT3G16750.1 similar to shell matrix protein [Pinctada fucata] (GB:BAD00044.1) -0.289450279912249 -2.42163870813770 0.0403518631224235 1 3.06088288548633 12.1957290933843 -0.289450279912249 0.14277849518309
AT3G14860_at 7.02241851804914 7.13218476334084 6.91289972909462 6.94024320316891 7.54446845248532 7.16201657503456 6.78712632890289 6.96129779396764 5.96259471974562 6.32407803010835 6.36495747167785 6.51642197664692 6.64651534676836 6.57974893430441 6.62162170797954 6.5336781373642 6.56837798068597 6.32269075851844 6.52425712609522 0.195208376471669 0.191353930997784 0.196340637433630 0.189484058760433 0.184698511727392 0.198807215317814 0.187349321706436 0.181322169893237 0.203625408787349 0.184280331800906 0.181322169893237 0.181799377794939 0.181322169893237 0.183289600523720 0.187675724365476 0.181322169893237 0.185936257426503 0.184224686916666 0.183807115327080 3 3 - 4998600 4999119 4998885.636 4998364 5001053 - gene protein_coding_gene FALSE TRUE AT3G14860.1|AT3G14860.2 NHL repeat-containing protein similar to NHL repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70280.2); similar to Os02g0234200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046378.1); similar to NHL repeat [Medicago truncatula] (GB:ABE85368.1); similar to Os02g0730400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048013.1); contains InterPro domain NHL repeat; (InterPro:IPR001258) 0.206545859737104 2.42082960481854 0.0404039189993032 1 3.05972215228913 13.4526126694520 0.206545859737104 0.0753138652688395
AT4G04340_at 10.7110713399292 10.7994960765729 10.5714038584103 10.5019616961142 11.1291952886309 10.9107111970478 10.8565867231834 10.8797500794781 10.2472257478707 10.4246652881607 10.9077432267396 10.7187306856329 10.6795748765568 10.8500000389895 10.6256126315852 10.4277391545299 10.4007017182306 10.7155421114543 10.1530097860648 0.101288805687546 0.096467782066013 0.105698490822574 0.104315359807948 0.0974549926371135 0.100790292530310 0.101154325383046 0.0976965302614873 0.110267130138283 0.0963594056659915 0.0977391712198778 0.0984143235268648 0.100234422594703 0.0989231165260154 0.103970402521181 0.096801274056227 0.111743657305292 0.0978267012612453 0.0975047300811443 4 4|0 +|/ 2125851 2126568 2126168.111 2122683 2126842 + gene protein_coding_gene FALSE TRUE AT4G04340.1|AT4G04340.2|AT4G04340.3 early-responsive to dehydration protein-related / ERD protein-related similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT1G62320.1); similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT4G22120.2); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os05g0594700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056508.1); similar to Os01g0534900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043256.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.178665285012994 2.42080889673734 0.0404052521926804 1 3.05969244512353 21.2653582805026 0.178665285012994 0.0427108542142994
AT3G46510_at 9.65783943659418 9.90446297162804 9.5671269802622 9.70559330437396 9.72335488760746 9.46063670684498 8.98134500471876 9.0512127990533 9.24820683633354 8.49022377265796 9.0505769848903 9.10745546997675 8.90599653083044 9.10269486163308 8.76263912863694 9.19223131017229 8.74434677416171 9.04843371422346 8.6813166600834 0.130139819178014 0.131884969355642 0.133929933076106 0.137078505039208 0.138898772344109 0.128665654239013 0.136054921583732 0.135664004455860 0.139784311011094 0.145207961978516 0.130600732720125 0.129101777004091 0.131549244531836 0.137384004845174 0.138880889128633 0.130875912663126 0.165028406851475 0.139298497442272 0.134194183651227 3 3 - 17135189 17135635 17135432.182 17134724 17137676 - gene protein_coding_gene FALSE TRUE AT3G46510.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G28830.1); similar to Spotted leaf protein 11 (Spotted leaf11) (Cell death-related protein SPL11) (GB:Q64HA9); similar to Spotted leaf protein 11, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99652.1); similar to Spotted leaf protein 11, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22055.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.199088670282119 2.41907644824536 0.0405169439692935 1 3.0572072145078 18.4043861463057 0.199088670282119 0.0678891576038277
AT3G51040_at 8.22102836439027 8.32519872339204 8.22723409011572 8.34055259281697 8.63729878665061 8.37164862864738 8.15761456355693 7.97400861787627 7.84534636945722 8.14218567959104 8.2135463941279 8.24897468290084 8.19147180201708 7.898694224376 8.15891897751461 8.30080301800983 8.27344163639755 8.2349961830698 8.09557501105525 0.148904760229591 0.154464321287018 0.148003487217825 0.152284406161981 0.160607756126812 0.165599475534467 0.154989964373903 0.155669733756270 0.162283116347314 0.147551854514433 0.148481845386407 0.159267098798013 0.150857100119023 0.154397346005502 0.151319509759877 0.143409094009299 0.158461779225366 0.143409094009299 0.156925460361750 3 3|0 -|/ 18963300 18963872 18963491 18963125 18964782 - gene protein_coding_gene FALSE TRUE AT3G51040.1|AT3G51040.2|AT3G51040.3 RTH (RTE1-HOMOLOG) Encodes a protein of 231 amino acids with 51% identity to RTE1 over 209 amino acids. similar to RTE1 (REVERSION-TO-ETHYLENE SENSITIVITY1) [Arabidopsis thaliana] (TAIR:AT2G26070.1); similar to green ripe-like 2 [Lycopersicon esculentum] (GB:ABD34617.1); contains InterPro domain Protein of unknown function DUF778; (InterPro:IPR008496) 0.193562234343829 2.41887479745957 0.0405299645619623 1 3.05691795364078 16.3907271550155 0.193562234343829 0.0619075568720919
AT2G39970_at 7.97771389540586 8.15484807496355 7.80398845869184 8.21502426299953 8.6268280880845 7.57809063225545 8.67544573144155 8.33879230161569 7.1690265006931 7.38704349560789 6.78413698112332 6.77687275620216 6.67792158128549 6.83377502537193 6.3946663871858 6.93502166440116 6.60572584620785 6.94966980480062 7.26756048618116 0.253808207655909 0.241765508223908 0.251495470056235 0.247104023204863 0.244463153969999 0.243380241280729 0.245802911476336 0.251639819348397 0.24482977225981 0.248614206039741 0.241763683635242 0.241763683635242 0.256849578099028 0.256660576916888 0.246601735407204 0.242614412435526 0.248874140451103 0.255149785806181 0.246573749363376 2 0|2 /|- 16691115 16692029 16691532.3 16690910 16693787 - gene protein_coding_gene FALSE TRUE AT2G39970.1 peroxisomal membrane protein (PMP36) similar to ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1), binding / folic acid transporter [Arabidopsis thaliana] (TAIR:AT5G66380.1); similar to Os09g0508900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063624.1); similar to putative peroxisomal membrane protein [Oryza sativa (japonica cultivar-group)] (GB:BAD17070.1); similar to Os03g0265300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049647.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.380268439343626 -2.41772871465669 0.0406040467497317 1 3.05527398271889 15.1809750556738 -0.380268439343626 0.205746838461824
AT3G03210_at 5.5915656335851 5.77518811878068 5.80543090575894 5.84739103513123 5.03368326968987 5.53562273041549 5.43554722703631 5.6001002725414 5.5972786390005 5.40352900179226 4.76237063622325 5.11961374054463 5.32781427312856 5.15245253804885 5.15810412670724 5.1492272192598 5.34169671158585 5.13415019173801 5.67433469922466 0.229070751375936 0.219573538952542 0.227267366133165 0.228698313255745 0.221228820821990 0.227358638334335 0.219363897443229 0.226185679767388 0.223547139060328 0.221208132408847 0.219363897443229 0.219363897443229 0.219363897443229 0.225728293759401 0.224745361657864 0.222099692258058 0.225296753790412 0.227848651950082 0.224320852188563 3 3 + 741570 742050 741900.818 740777 742316 + gene protein_coding_gene FALSE TRUE AT3G03210.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83277.1) -0.230135214044135 -2.41729714909136 0.0406319780449468 1 3.05465495333428 10.9288458789475 -0.230135214044135 0.0970493882035973
AT2G40460_at 6.54855521140058 6.99008769538024 8.12097042372243 7.87917146058672 7.50605168313847 6.94551353042675 8.85812435695303 8.67035124029199 6.81900050293822 7.39299565636413 7.59410725438618 7.40251436338277 8.26218406462183 7.78147903452604 7.0067261573908 8.83102166314772 8.67020779731558 7.55981777518566 7.327223110133 0.203283821514824 0.197239321428011 0.196088862899457 0.199242244387892 0.199593048801975 0.195077700855482 0.204005170825065 0.199158766826261 0.207262220723560 0.195331122101088 0.205021862868397 0.196594624428105 0.190717692909375 0.200026572858714 0.199624409631654 0.200020514502178 0.196869777746064 0.194527298391791 0.196931883359096 2 2 + 16907650 16908225 16907915 16903985 16908358 + gene protein_coding_gene FALSE TRUE AT2G40460.1 proton-dependent oligopeptide transport (POT) family protein similar to ATPTR3/PTR3 (PEPTIDE TRANSPORTER PROTEIN 3), transporter [Arabidopsis thaliana] (TAIR:AT5G46050.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE86036.1); similar to peptide transporter [Lotus japonicus] (GB:AAB69642.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024) 0.277457327864128 2.41709498314393 0.0406450690147261 1 3.05436497404377 15.2239767103490 0.277457327864128 0.134368832466422
AT1G79990_at 6.9477341061414 6.7760565309374 6.33537670922296 6.39459012386954 6.55992078556934 6.34121133870067 6.58152368875865 6.22152755679525 7.30297256599094 6.88659123491611 7.20524700388855 7.23992049537468 6.63886188627494 6.67139129853433 7.10771995951496 6.32466653183614 6.15678620644813 6.7331947038818 6.68022415552332 0.188116260510433 0.190814636945109 0.195326340273061 0.206099276286853 0.187803912767566 0.200088963027259 0.187803912767566 0.202751047501126 0.197234459296467 0.200463024339116 0.195610226574182 0.195760630680587 0.198922861664576 0.191903469952354 0.19979964245622 0.193669480857435 0.220207239390473 0.192888383252003 0.189458204288871 1 1|0 +|/ 30095419 30096486 30095822 30090676 30097131 + gene protein_coding_gene FALSE TRUE AT1G79990.1 coatomer protein complex, subunit beta 2 (beta prime), putative similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT3G15980.3); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G52360.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); similar to coatomer protein complex, subunit beta 2 [Danio rerio] (GB:NP_001001940.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.210404103037573 -2.41681250586439 0.0406633675033567 1 3.05395980310768 13.3779023530974 -0.210404103037573 0.079381073226038
AT4G17770_at 7.83007782344942 8.1319656516843 8.71283184874528 8.4776400299332 8.9568276672355 8.88443566278944 9.39980364459764 9.57736508927896 8.76944715743592 9.0835813845561 9.28403770267525 9.5901679284516 9.43193233027559 9.37430613473025 9.04877634156808 9.00194980241449 9.11368229699015 9.26074216080885 8.77631221375348 0.142762059906975 0.128664730210161 0.124531044150415 0.131423337254974 0.122791333365330 0.122791333365330 0.122791333365330 0.122791333365330 0.137116381759891 0.129776549016844 0.129049159287690 0.122852722273385 0.123668503490171 0.122791333365330 0.130558886034971 0.122791333365330 0.126713427830458 0.129911159999140 0.123474224606176 4 4 + 9879523 9880065 9879807.636 9876251 9880267 + gene protein_coding_gene FALSE TRUE AT4G17770.1 ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS7 (Arabidopsis thaliana trehalose-phosphatase/synthase 7), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G06410.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to trehalose-6-phosphate synthase, putative [Brassica oleracea] (GB:ABD65165.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Putative trehalose-6-phosphate synthase [Oryza sativa (japonica cultivar-group)] (GB:AAN52740.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.204941584290362 2.41670495116829 0.0406703369160047 1 3.05380553336864 17.8161915551248 0.204941584290362 0.0740746982975249
AT2G35410_at 9.01697635151885 9.3193991431667 8.72459707641534 8.78642415956002 9.26044371832244 8.9064761462711 9.5626696037579 9.66860677464271 9.442856615186 9.55476811025635 9.4084364768531 9.7557320922121 9.26881986421437 9.22577308897034 9.80077464109809 9.63934194190006 9.10574243392848 9.54612214394803 9.27863175802016 0.108405473220198 0.112387893189116 0.130082983862003 0.118151216653029 0.108397223251455 0.116501007134520 0.111993218642484 0.111797501369989 0.115968221853736 0.107224220961197 0.109115536001421 0.108699645975253 0.108025183218787 0.114595791285221 0.109306802602750 0.109431506637963 0.125688480556864 0.107224220961197 0.110786756401765 2 2 + 14905900 14906368 14906239.455 14905403 14906829 + gene protein_coding_gene FALSE TRUE AT2G35410.1 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G09040.1); similar to RNA-binding re (GB:ABE85149.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.214501842779792 -2.41574883058453 0.0407323449488369 1 3.05243416302388 18.6028299533126 -0.214501842779792 0.083317843080235
AT4G25960_at 9.41217407906084 9.43940288261603 8.58081569299577 8.93099505074328 9.78184611490512 9.55674386216707 9.74408108326134 9.88554268742392 10.6431978666273 10.1974166478367 10.7552976655140 10.6323677882032 10.4583172175150 10.6225231415533 10.3199768786015 10.1298511317829 9.75715544631795 10.3452846528635 10.3113433429323 0.076139557634348 0.0786896045092803 0.0859816183687732 0.0825798766506929 0.0766003961894414 0.078711370593559 0.0883453691353647 0.0777770305016993 0.082189762026076 0.077218775165908 0.076897670370203 0.0759099948912995 0.0779752299195665 0.0792277394598922 0.083052277238269 0.0763081720591122 0.080477349341861 0.0790361466275758 0.0783237216320262 4 4 + 13182640 13183357 13183030.818 13177418 13183640 + gene protein_coding_gene FALSE TRUE AT4G25960.1 PGP2 (P-GLYCOPROTEIN 2); ATPase, coupled to transmembrane movement of substances Identical to Multidrug resistance protein 2 (P-glycoprotein 2) (MDR2) [Arabidopsis Thaliana] (GB:Q8LPK2;GB:O04711); similar to PGP10 (P-GLYCOPROTEIN 10), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G10680.1); similar to PGP13 (P-GLYCOPROTEIN 13), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G27940.1); similar to ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19), ATPase, coupled to transmembrane movement of substances / auxin efflux transporter [Arabidopsis thaliana] (TAIR:AT3G28860.1); similar to H0423H10.7 [Oryza sativa (indica cultivar-group)] (GB:CAC09461.2); similar to P-glycoprotein [Gossypium hirsutum] (GB:AAF23176.1); similar to MDR-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59582.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.207044607529626 -2.41570101199539 0.0407354486488885 1 3.05236557787797 19.7972415280263 -0.207044607529626 0.076232376715428
AT3G09320_at 5.87968018004153 6.3032492759445 5.79012049799725 6.25804215683189 7.9057600805885 6.86021906435534 5.92330866478222 6.02581527536129 5.27532039416155 4.96747302522007 4.80327835175795 5.30998259462517 5.03869694419505 5.56488627083092 5.22051992146899 5.44451227049978 5.68597935029816 4.72552541144483 5.10481785418746 0.228066391355742 0.222993908805646 0.23951545891902 0.231764118450642 0.224624680317603 0.245736558058833 0.225960501241536 0.223388184882810 0.222519934340313 0.225303404010075 0.224552482918765 0.221262171140556 0.224827685990160 0.230376352154334 0.223890115329319 0.2205707707737 0.225854161282945 0.225674228738357 0.227962748058939 3 3 - 2862180 2863143 2862509.455 2861749 2864251 - gene protein_coding_gene FALSE TRUE AT3G09320.1 zinc finger (DHHC type) family protein similar to zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G04270.1); similar to Os05g0458000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055742.1); similar to Os01g0844400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044780.1); similar to Zinc finger, DHHC-type [Medicago truncatula] (GB:ABE87833.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.389412157888971 2.41501184432914 0.0407802058751903 1 3.05137713462842 11.5382959314444 0.389412157888971 0.212090834117293
AT1G03590_at 5.83188250592792 6.40055422578188 5.48247341927946 6.089918239935 6.46964503516103 6.34769049140265 4.4535038873357 5.3190632637691 6.11569759053201 5.03989484559131 6.36330131416048 5.71970661165239 5.52372700536545 6.38488594085336 5.77580137157713 6.4044347638236 5.32043776672058 5.92403771491938 6.10819795877885 0.257498027013034 0.268655734440981 0.260731079213065 0.26584894961487 0.255791924459694 0.267403198611744 0.253504089074731 0.268639873505546 0.25234102568126 0.252904244726271 0.254914988945332 0.252398084899218 0.261714858528811 0.260213523703379 0.260035112719301 0.257399548792336 0.255019423875061 0.265806631299909 0.250462490035565 1 1 - 894506 895140 894848.455 894254 896439 - gene protein_coding_gene FALSE TRUE AT1G03590.1 protein phosphatase 2C family protein / PP2C family protein similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT4G03415.1); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABE77622.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.384312794287107 2.41375450296031 0.0408619893748287 1 3.04957385563148 11.6401605632915 0.384312794287107 0.208847848946925
AT1G01470_at 11.7243484488574 11.7926291712787 11.9424145685161 11.8971556914476 12.0213969110906 11.7717729663966 11.8019651499242 11.9097405752046 10.8428804852525 11.0967290382692 10.9775727246813 10.7852311782924 11.4743033130396 11.2911222986019 10.5071291647396 11.1713727782894 11.6942455829377 11.1526542495371 10.6631850968700 0.0652123993679753 0.0646890935688923 0.0629233120182158 0.0646804034999367 0.0651355091544552 0.072401436207496 0.0649697407650894 0.0650606210327831 0.0668229216871082 0.0646537242290457 0.0674071889310252 0.065375964601114 0.0636518744368735 0.0659700721583252 0.0677251797871746 0.0633485432785307 0.0656189456797117 0.0671467358996894 0.0638533224002103 1 1|0 -|/ 172359 172733 172528.3 172146 172948 - gene protein_coding_gene FALSE TRUE AT1G01470.1 LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) Encodes late-embryogenesis abundant protein whose mRNA levels are induced in response to wounding and light stress. Might be involved in protection against dessication. Identical to Putative desiccation-related protein LEA14 (LEA14) [Arabidopsis Thaliana] (GB:O03983;GB:Q42314); similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT2G46140.1); similar to Late embryogenesis abundant protein Lea14-A (GB:P46518); contains InterPro domain Late embryogenesis abundant protein 2; (InterPro:IPR004864) 0.182559951257065 2.41207454717833 0.0409715179959140 1 3.04716460731617 22.8573289943705 0.182559951257065 0.0491421251233328
AT1G52290_at 8.30605211547587 8.03895589209197 8.05594194703963 7.70676419875829 7.00127077486192 6.92124018777858 7.7070537209353 7.26812229463426 8.11186692564667 7.33389538007673 8.04198988088334 7.77380427736579 7.76706573708519 8.12072353700445 6.93638894016922 7.33164624380239 7.0611602009949 7.77739606667754 7.59155808803311 0.137752561363744 0.139170096790768 0.137328499716213 0.146608676662169 0.14261131288475 0.148074154188918 0.138471799425387 0.150540014487613 0.151820383163457 0.140912008191895 0.144327695102441 0.140386127566550 0.142701434053673 0.140181538991695 0.149552074462296 0.141327647863618 0.151459658521075 0.142716294374525 0.140421855670521 1 1|0 -|/ 19473958 19474611 19474262.111 19473702 19476118 - gene protein_coding_gene FALSE TRUE AT1G52290.1 protein kinase family protein similar to ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1), ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT3G24550.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.243288333047865 -2.41201664163141 0.0409752985165032 1 3.04708156711072 15.2658644706553 -0.243288333047865 0.108395118032508
AT2G41640_at 5.20483277263103 6.1297246446831 6.45507917518634 6.45937004488589 6.25346023285185 5.9533854393828 4.85488251896095 4.92712873752351 3.9143397197128 4.1180264086065 3.07948626693019 2.64897697595746 4.00494833926688 3.39378312998713 2.73114720912831 4.3497437540311 4.95375080499592 3.70049094301531 3.84600943243246 0.278716504466214 0.287848730391799 0.286234140104407 0.284243533518525 0.273803273031429 0.284809337122042 0.280294923692567 0.286658343239758 0.276883593534352 0.281663637025412 0.278951859494423 0.288179628665703 0.27718226528012 0.28897455266536 0.286489738099117 0.276931642874434 0.281377517094043 0.285696307122332 0.273820502450267 2 2 + 17368878 17369400 17369106.909 17367569 17369613 + gene protein_coding_gene FALSE TRUE AT2G41640.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57380.1); similar to glycosyltransferase [Medicago truncatula] (GB:CAI30145.1); contains InterPro domain Protein of unknown function DUF563; (InterPro:IPR007657) 0.324756981145263 2.41140693029640 0.0410151263698775 1 3.04620721462155 9.5633576698455 0.324756981145263 0.168735643831562
AT4G00740_at 7.83633227026625 7.8877046539629 7.59578392616679 7.7774937389627 8.27346952253436 7.96254414172401 8.5244412088544 8.62470354512064 7.39306610928594 7.67556838374257 8.32265701822654 8.56237165035887 8.49680753884942 8.22581551216999 8.28752291044811 8.18707453751726 8.12339356355472 8.14651032035033 7.68935556790586 0.151583122771789 0.148683809882217 0.160781683725919 0.160423066011235 0.148780267878598 0.160135300690036 0.152805378957602 0.151065388160373 0.176659267209733 0.150682224687162 0.145281967038057 0.150485758712777 0.152790379777633 0.153884490332511 0.146843576882434 0.145281967038057 0.150375493515691 0.170006189604488 0.156672423826245 4 4 - 307921 308628 308337.818 307431 310482 - gene protein_coding_gene FALSE TRUE AT4G00740.1 dehydration-responsive protein-related similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to OSIGBa0139P06.9 [Oryza sativa (indica cultivar-group)] (GB:CAH67036.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE88263.1); similar to OSJNBb0032E06.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE02253.2); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) 0.196024928626102 2.41125858383883 0.0410248225858401 1 3.04599448269214 16.0003170351553 0.196024928626102 0.0653002704529996
AT1G63130_at 5.9332252583992 6.55470804298728 6.00533040482352 5.94844055342354 6.7794843750874 5.56885084643011 7.10092843546342 6.6223837203107 5.95805288099176 7.26954312912704 7.01661417148958 6.54390528822299 6.56296026607128 5.83337242882070 6.13225459594982 6.9119450726062 6.21242793908474 5.9476425050021 7.2015324820938 0.404619440914454 0.404619440914454 0.404619440914454 0.404619440914454 0.405581593076576 0.431343318092656 0.419524531004055 0.404619440914454 0.435156431750088 0.404619440914454 0.427712375777045 0.404619440914454 0.421560638005845 0.475171358147006 0.431040583948788 0.404619440914454 0.449181795370734 0.445800016878994 0.404619440914454 1 1 + 23417886 23418211 23417992.25 23416395 23418814 + gene protein_coding_gene FALSE TRUE AT1G63130.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT1G62930.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62910.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to fertility restorer homologue [Raphanus sativus] (GB:CAD61286.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.445927016673637 -2.40769842185261 0.0412582110629364 1 3.04088952871105 12.9165938450207 -0.445927016673637 0.249829800169122
AT2G20810_at 5.8555417057942 6.56192885967812 6.17531317833167 6.05879802943273 6.46737400720185 6.87729791033077 7.11588308728597 7.21539817804642 6.45373306180325 6.58830178230582 6.61843897657828 6.45145788638314 6.3772953339671 6.22416322597741 6.51568401196525 6.424761579016 5.65286986262186 6.13984835203784 6.71680685063778 0.227445189795266 0.214093203665339 0.220380893294592 0.211985820449194 0.215384613830200 0.220575628861919 0.216962258893170 0.216282663185336 0.224533869453724 0.213295072191462 0.213962714574848 0.215928469360923 0.221737894565177 0.21869950156129 0.217691138105337 0.212256012919554 0.237378734714795 0.226384411408192 0.218175116231476 2 2 + 8966108 8966655 8966384.727 8964874 8966861 + gene protein_coding_gene FALSE TRUE AT2G20810.1 GAUT10/LGT4 (Galacturonosyltransferase 10); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT4 (Galacturonosyltransferase 4), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G47780.1); similar to H0410G08.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67658.1); similar to Os04g0636100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054014.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.289103918862092 -2.40700216725928 0.0413040095011133 1 3.03989125072482 12.9843646037547 -0.289103918862092 0.143802016707557
AT3G19720_at 7.40224304614248 7.52221778980222 7.2288949547731 7.15116067578525 7.93988175335488 7.73410807319508 8.9452666825074 8.61555111235792 7.62845208299148 7.59142749725694 8.22218124565067 8.01422156133103 7.7513501049796 7.68441734758645 7.91557794049039 7.67702320421806 7.49841951303243 7.7068714410713 7.59332983193034 0.141324826859375 0.138759339460545 0.141569271495671 0.142707940697203 0.142803848464635 0.146447141820514 0.149591159236678 0.145775559964064 0.146987295362873 0.149290810521901 0.143446417756804 0.138911718911197 0.144563199470177 0.145192790128049 0.139730001587865 0.140265520178240 0.149493952043061 0.146494055784200 0.148452752512805 3 3 - 6850600 6855328 6853018.952 6850377 6855519 - gene protein_coding_gene FALSE TRUE AT3G19720.1|AT3G19720.2 ARC5 (ACCUMULATION AND REPLICATION OF CHLOROPLAST 5); GTP binding / GTPase Encodes a novel chloroplast division protein. Mutants of exhibit defects in chloroplast constriction, have enlarged, dumbbell-shaped chloroplasts. The ARC5 gene product shares similarity with the dynamin family of GTPases, which mediate endocytosis, mitochondrial division, and other organellar fission and fusion events in eukaryotes. Phylogenetic analysis showed that ARC5 is related to a group of dynamin-like proteins unique to plants. A GFP?ARC5 fusion protein localizes to a ring at the chloroplast division site. Chloroplast import and protease protection assays indicate that the ARC5 ring is positioned on the outer surface of the chloroplast. Facilitates separation of the two daughter chloroplasts. similar to dynamin family protein [Arabidopsis thaliana] (TAIR:AT1G53140.1); similar to Vacuolar sorting protein VPS1, dynamin, and related proteins (ISS) [Ostreococcus tauri] (GB:CAL51904.1); similar to Os12g0178700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066307.1); similar to hypothetical protein [Physcomitrella patens subsp. patens] (GB:BAE45852.1); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.201726818011675 -2.40695360365935 0.0413072058285383 1 3.039821622154 15.5239959770837 -0.201726818011675 0.0716646342084382
AT1G79670_at 5.55245712786676 5.56815406188902 5.96846884281496 5.72142157917812 6.52617174250222 5.66449318919469 4.78549267609719 4.61922434301114 4.94904943260423 4.6518643537233 4.84008372979541 4.69582789225505 4.56403149510175 5.05953730739019 4.18336663790731 5.26534198656482 4.72846890768887 4.20318256543507 5.14180071770608 0.215408787080001 0.210341376898260 0.214014913792994 0.219875562958521 0.212244272194924 0.223410297863252 0.210341376898260 0.210412895046526 0.211430665762137 0.210341376898260 0.216544830999668 0.216889696807115 0.219285052921348 0.220061752850042 0.213571719637079 0.21110934457605 0.224737062775365 0.216142395029425 0.230096276218097 1 1 - 29981788 29982336 29982066.545 29981618 29984243 - gene protein_coding_gene FALSE TRUE AT1G79670.1|AT1G79670.2 RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1); kinase|RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1) Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races. Identical to Wall-associated receptor kinase-like 22 precursor (EC 2.7.11.-) (WAKL22) [Arabidopsis Thaliana] (GB:Q8RY17;GB:Q4JQ55;GB:Q9MA08); similar to WAKL2 (WALL ASSOCIATED KINASE-LIKE 2), kinase [Arabidopsis thaliana] (TAIR:AT1G16130.1); similar to WAKL4 (WALL ASSOCIATED KINASE-LIKE 4), kinase [Arabidopsis thaliana] (TAIR:AT1G16150.1); similar to WAKL5 (WALL ASSOCIATED KINASE-LIKE 5), kinase [Arabidopsis thaliana] (TAIR:AT1G16160.1); similar to Wall-associated receptor kinase-like 4 precursor (GB:Q9S9M2); similar to Wall-associated receptor kinase-like 5 precursor (GB:Q9S9M1); similar to Wall-associated receptor kinase-like 3 precursor (GB:Q9S9M3); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Wall-associated kinase; (InterPro:IPR013695) 0.308524341731290 2.40652699687667 0.0413352945923589 1 3.03920997633726 10.3540945619585 0.308524341731290 0.157794525117364
AT1G62810_at 8.9143008228036 9.33975471268728 9.42499152789893 9.55118622445133 9.87568242893021 9.51463900256486 7.64856720197436 8.38525539186393 6.55640148557145 7.16987824416139 6.35135751801321 5.55767302237676 6.76525800079464 7.01236040142008 5.19699611064284 6.8077372963041 7.04275197411686 6.34996306391311 6.60749029451199 0.244493402241875 0.250444392263953 0.251220263708035 0.252389504103791 0.254097437595484 0.256148233146876 0.245091534711192 0.244493402241875 0.248544579884590 0.244493402241875 0.245355414936756 0.250740214953561 0.244493402241875 0.250645365754395 0.252438712102647 0.244493402241875 0.250045867473303 0.256944479909572 0.249214885965613 1 1|0 -|/ 23261920 23262577 23262204.1 23261391 23265631 - gene protein_coding_gene FALSE TRUE AT1G62810.1 copper amine oxidase, putative similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT3G43670.1); similar to copper amine oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G12290.1); similar to amine oxidase [Canavalia lineata] (GB:AAD49420.1); similar to copper-containing amine oxidase [Solanum lycopersicum] (GB:CAI39243.1); similar to Os04g0269600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052338.1); contains InterPro domain Copper amine oxidase; (InterPro:IPR000269) 0.3136220478309 2.40633817302052 0.0413477332852487 1 3.03893925438709 15.6635149215781 0.3136220478309 0.161414455261302
AT1G24100_at 9.75793946389166 10.0620136293572 9.92015760833473 9.97707896667902 10.1393045469578 9.65132606704025 10.1816920478612 10.1085306742718 8.61317074895462 9.83770124547852 9.98726177905613 9.83680310892686 9.86517883160976 9.92454977456393 9.46453348293059 9.9305696925559 9.71037449477958 9.90655697511003 9.31609896187067 0.112225632395699 0.109867809422845 0.111524940391600 0.11142895459556 0.109253713654924 0.115619020140820 0.112921092317773 0.108769868121457 0.136380962467398 0.108769868121457 0.108769868121457 0.112758288224527 0.108769868121457 0.113854465016936 0.115423557417447 0.108804912258346 0.112741236511223 0.115191659299419 0.114769567376947 1 1 - 8525565 8526096 8525928.909 8525424 8527076 - gene protein_coding_gene FALSE TRUE AT1G24100.1 UGT74B1 (UDP-glucosyl transferase 74B1); UDP-glycosyltransferase/ thiohydroximate beta-D-glucosyltransferase/ transferase, transferring glycosyl groups Encodes a UDP-glucose:thiohydroximate S-glucosyltransferase, involved in glucosinolate biosynthesis similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT2G43840.1); similar to thiohydroximate S-glucosyltransferase [Brassica napus] (GB:AAL09350.1); similar to thiohydroximate S-glucosyltransferase [Brassica rapa subsp. pekinensis] (GB:AAZ15016.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.233497187707239 2.40633440199492 0.0413479817381219 1 3.03893384778611 19.5166981269873 0.233497187707239 0.100785099212741
AT3G07440_at 5.2488629001514 5.35378847640089 4.72634668897819 4.67700074196522 4.54780463968032 4.78126343673841 4.77534412313044 5.02607026157178 5.02926288017159 4.52392355560746 5.12183545931765 4.97037844859476 4.73474094179785 5.0049221216609 4.85982758502360 5.14085018024182 4.84210845343764 4.61320920528767 5.08412096105231 0.252727088218677 0.258535819609533 0.26536650818304 0.250023295270937 0.251109762065816 0.260215700218600 0.257599462981848 0.255872316296 0.253952883006002 0.26196955828758 0.255937462663147 0.255237357471053 0.250023295270937 0.250023295270937 0.254452338559553 0.250517876981704 0.271187413349601 0.258069854562488 0.25232421836137 3 3|0 +|/ 2381531 2382868 2381978.571 2381343 2383213 + gene protein_coding_gene FALSE TRUE AT3G07440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48530.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD22058.1) -0.193015489831655 -2.40445689867048 0.0414718661150476 1 3.03624213810995 9.78710341609242 -0.193015489831655 0.062590071821187
AT4G10040_at 6.82391434060486 7.18155088242735 7.69898466820849 7.7483565192232 6.3439561040297 6.38051833826143 7.89585654526385 7.95273182030127 6.79210510998907 7.0910234119859 7.89884526209098 7.68027975962479 7.05217874411282 7.66735450500145 7.59334606157511 7.71676483095453 7.78420629603333 7.46043494582999 6.51215478729174 0.181480995138824 0.172738832644004 0.170327488240890 0.181124160441362 0.174900075143683 0.173864244511140 0.174586746455723 0.180580560991401 0.179616293722907 0.176610611170729 0.175134627586308 0.1726835449328 0.174951847484514 0.174436907763084 0.172531073455148 0.177295588538004 0.183873536098017 0.177508861711112 0.187265019314087 4 4|0 +|/ 6277081 6278238 6277555.1 6276995 6278506 + gene protein_coding_gene FALSE TRUE AT4G10040.1 CYTC-2 (CYTOCHROME C-2); electron carrier Encodes cytochrome c. Promoter directs preferential expression in vascular tissues of cotyledons, leaves, roots, and hypocotyls, and in anthers. Identical to Probable cytochrome c At4g10040 [Arabidopsis Thaliana] (GB:Q9T0G2); similar to ATCYTC-A/CYTC-1 (CYTOCHROME C-1), electron carrier [Arabidopsis thaliana] (TAIR:AT1G22840.1); similar to Cytochrome c (GB:P00051); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c; (InterPro:IPR012125); contains InterPro domain Cytochrome c, class I; (InterPro:IPR003088); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Cytochrome c, class IA/ IB; (InterPro:IPR002327) 0.193844520589340 2.40389657192857 0.0415089103580718 1 3.03543885933294 14.4557856874942 0.193844520589340 0.0635638683977288
AT3G55380_at 6.82857400086622 6.91639916873054 6.46333985899827 7.01214192325046 7.00325789157152 6.8285573816912 5.8578330588042 6.68678343840056 6.09115793373826 5.59206656161053 5.83894448504759 5.97276954525987 6.42271582158871 6.35926901901591 6.51998876773296 6.41086624033744 6.06345004233924 6.07574255644544 5.7052732743382 0.184586012456072 0.180291669715953 0.183896871625023 0.178903423420968 0.182724124007935 0.186934548840633 0.186092656778128 0.183345257110690 0.178727274959715 0.178727274959715 0.186508842201223 0.193278890562871 0.180382759597885 0.199530266323644 0.185499661812840 0.178727274959715 0.194414480392291 0.187700751475248 0.189158703633854 3 3|0 +|/ 20542505 20543753 20543051.111 20542384 20544150 + gene protein_coding_gene FALSE TRUE AT3G55380.1 UBC14 (ubiquitin-conjugating enzyme 14); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2 14 (EC 6.3.2.19) (Ubiquitin-protein ligase 14) (Ubiquitin carrier protein 14) (TAYO29) (UBC14) [Arabidopsis Thaliana] (GB:P42747); similar to UBC13 (ubiquitin-conjugating enzyme 13), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G46460.1); similar to ubiquitin-conjugating enzyme [Arachis hypogaea] (GB:ABI84264.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.333114616834689 2.40282870114888 0.0415796009404781 1 3.03390802394846 12.7016779567641 0.333114616834689 0.175339132758428
AT2G22740_at 7.8495563544711 8.07094026298697 7.85066566417042 7.86080318381502 8.22438550590258 8.19039278264055 8.12358503147547 8.0522985197052 8.19513367425233 8.43238734558505 8.11605481408423 8.05013280179898 8.03873634660767 7.87566398160205 7.77643649869462 8.0900371833646 8.05189694728925 7.80879880999315 8.37881845163758 0.137576555163434 0.134958424660498 0.138365729841223 0.134958424660498 0.138677525852219 0.135874486033748 0.140843932333659 0.142001307986302 0.148173535381477 0.141327130369090 0.142774187281462 0.135665373671289 0.148507978085366 0.145236168696914 0.152030320475961 0.138304354589448 0.136267378452177 0.144379411801148 0.139986384254350 2 2 - 9671344 9671895 9671524 9669718 9674061 - gene protein_coding_gene FALSE TRUE AT2G22740.1|AT2G22740.2 SUVH6 (SU(VAR)3-9 homolog 6) Encodes a SU(VAR)3-9 homolog, a methyltransferase involved in histone methylation. Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 6) (H3-K9-HMTase 6) (Suppressor of variegation 3-9 homolog protein 6) (Su(var)3-9 homolog protein 6) (Protein SET DOMAIN GROUP 23) (SUVH6) [Arabidopsis Thaliana] (GB:Q8VZ17;GB:Q9C5P2;GB:Q9ZQ40); similar to SUVH5 (SU(VAR)3-9 HOMOLOG 5) [Arabidopsis thaliana] (TAIR:AT2G35160.1); similar to Os09g0362900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062989.1); similar to putative histone-lysine N-methyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAC98666.1); similar to Os08g0400200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061753.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) -0.176005037794941 -2.40232140427824 0.0416132249935423 1 3.03318081827164 16.1835364948564 -0.176005037794941 0.0407141674278806
AT1G19690_at 4.6964544634847 4.52108997483061 4.42303126341847 4.04827079690951 4.99749662002903 4.96662746742467 4.68346008143787 4.14926369877269 5.18011113966236 4.489343873145 5.42917173603427 5.45302705734656 4.89764595086075 5.11340003983947 5.58275166258641 4.90085734980549 5.04120868488024 4.84979655941683 4.57688132556579 0.214850445849035 0.204991350584768 0.215609574907796 0.205155908935757 0.214400983311508 0.216281540435644 0.212960169133376 0.21066329298306 0.215223465266314 0.213543079944606 0.206050395898751 0.205382515999623 0.213606152805793 0.204991350584768 0.211378353976487 0.208438691794078 0.206303315090407 0.208224930924218 0.210970899586431 1 1|0 -|/ 6808003 6808694 6808343.375 6807706 6809560 - gene protein_coding_gene FALSE TRUE AT1G19690.1 catalytic/ coenzyme binding similar to hypothetical protein, 5' partial [Musa acuminata] (GB:ABF70040.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.252996541476246 2.40096271133775 0.0417034142735236 1 3.03123322222746 9.51434237556543 0.252996541476246 0.117054152979252
AT2G47880_at 8.46756466274331 8.86424733431166 6.14193620774463 7.17105832333866 7.89552440821114 7.86701836329721 6.72032418762134 7.40585735943738 6.29436674736809 4.26188562471817 6.96414041874524 8.18001387277903 7.39908397582869 6.50809511142034 7.58725607869249 8.85512792610681 6.69091537565359 6.78566835445875 7.3331859650544 0.194928592251117 0.197425641980818 0.203176137753934 0.198459488087604 0.191970443772249 0.191421474853655 0.196556254386317 0.189095216882491 0.205038181041238 0.209742126042343 0.206584461853767 0.190240532788971 0.194950902548067 0.213965321997778 0.190904233630474 0.191045627273959 0.198294230472575 0.210366696837706 0.196874761172471 2 2 + 19612201 19612470 19612343.455 19612110 19612741 + gene protein_coding_gene FALSE TRUE AT2G47880.1 glutaredoxin family protein Identical to Glutaredoxin-C13 (AtGrxC13) (GRXC13) [Arabidopsis Thaliana] (GB:O82255); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT3G62960.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.406263733224943 2.40053927645037 0.0417315615745013 1 3.03062627991645 14.2339082316336 0.406263733224943 0.224785804540015
AT4G08960_at 5.72956970641906 6.19259818630751 5.24266531674117 5.47566275235635 5.63541981658633 5.36573391345828 5.73809780567418 5.56733067474016 5.57826925919041 5.26413726808256 5.24654458319669 5.39863862632568 4.88244524227638 5.82251682428453 5.45281634397898 5.27296777529395 4.87957798890468 5.1268118818642 5.23783008728231 0.203395404771255 0.197754593517447 0.196082693822446 0.200554291928782 0.199826752041313 0.205855821553236 0.193537945839216 0.201292442486726 0.206601997796612 0.196892498821427 0.197861490402381 0.195336318060680 0.206557378909786 0.195403087633201 0.204457770059545 0.196253875333392 0.203226642048804 0.205257050494196 0.203058074507153 4 4 + 5746940 5747467 5747213.364 5746286 5748282 + gene protein_coding_gene FALSE TRUE AT4G08960.1 phosphotyrosyl phosphatase activator (PTPA) family protein similar to Phosphotyrosyl phosphatase activator, PTPA [Medicago truncatula] (GB:ABE93204.1); contains InterPro domain Phosphotyrosyl phosphatase activator, PTPA; (InterPro:IPR004327) -0.23840880337624 -2.40053016568839 0.0417321674096435 1 3.03061322087226 10.9285691614274 -0.23840880337624 0.105346815523993
AT4G23180_at 9.89949225311041 9.81975165377558 9.96385716561385 9.69922635423115 9.74488040188023 9.55598830430263 8.81840438919453 8.5030725163632 10.0570987946281 9.1350805497682 9.49804213097978 10.1089155027591 8.90334013744942 9.6535984051095 9.28057358202155 9.16598808901303 9.13507333147577 9.58722892082062 9.24503390971735 0.100047108431736 0.0982297147328435 0.096587692974639 0.100724114308082 0.0982103083149076 0.102100093038476 0.101523831904211 0.103895858314839 0.0997483384477094 0.103445197417358 0.102656558678229 0.097490900067573 0.0987970002973343 0.100876056223160 0.100359752435952 0.098726484445914 0.102333148648879 0.0997618088768212 0.0997574864064302 4 4|0 +|/ 12140267 12140762 12140592.1 12138148 12140932 + gene protein_coding_gene FALSE TRUE AT4G23180.1 CRK10 (CYSTEINE-RICH RLK10); kinase Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23160.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23150.1); similar to CRK6 (CYSTEINE-RICH RLK 6), kinase [Arabidopsis thaliana] (TAIR:AT4G23140.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.209165890572537 2.40012505317749 0.0417591149251240 1 3.0300325521589 18.9484171783880 0.209165890572537 0.0795867926837277
AT3G10650_at 6.23268805754975 6.4677021333121 6.19438503658325 6.58826620826849 6.59908228759848 6.33791351999737 6.38404033097003 6.4153238183778 5.65139901055969 5.49825499579089 6.09612161050043 6.37301806229385 5.95076233158814 6.35436799650959 6.24771744497503 6.27842889715718 5.5470055383021 5.45616122262058 5.79709367499385 0.22262640194168 0.225402569166769 0.223630610401498 0.222931851515046 0.223967990667958 0.231542645358644 0.228853304684119 0.223101755398822 0.245726712273951 0.23805912270412 0.224603899746920 0.221592440089261 0.226498320756516 0.233933796893617 0.236430850137629 0.226128097399004 0.245659643292097 0.235343009155274 0.230273829024378 3 3 - 3325631 3326094 3325893 3325175 3330897 - gene protein_coding_gene FALSE TRUE AT3G10650.1 similar to structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to Os03g0788300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051501.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99255.1) 0.222002586135683 2.39874102579773 0.041851309801735 1 3.02804883167991 12.2458570649696 0.222002586135683 0.0915002335514195
AT4G25230_at 7.10249093722322 7.27789419539093 7.15924132206603 6.95911952324301 7.28872148905772 6.95382795390589 6.69016244461095 6.98322118583939 5.91084623119041 5.85961650272572 6.41782269007138 6.07929583997573 5.96522635552564 6.54250257700893 6.1641200935696 5.93049917773773 5.87038109523895 6.56226311748195 5.71469311520261 0.212242448471065 0.203935002085645 0.210277208575396 0.208120230744697 0.207018357171433 0.211593536506804 0.210378151791507 0.210276891530513 0.224099384871703 0.20567539998398 0.202940523781727 0.202940523781727 0.215805201138222 0.207670143137642 0.206916553650533 0.204287340792101 0.216787698538134 0.222768937210061 0.202940523781727 4 4 + 12927514 12928308 12927798.636 12923929 12929166 + gene protein_coding_gene FALSE TRUE AT4G25230.1|AT4G25230.2 RIN2 (RPM1 INTERACTING PROTEIN 2); protein binding / zinc ion binding RPM1 interacting protein 2, has a CUE domain which is sufficient for the interaction with RPM1.Positive regulator of RPM1 and PRS2 mediated hypersensitive response.Functions as ubiquitin ligase and binds to RPM1. similar to RIN3 (RPM1 INTERACTING PROTEIN 3), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G51450.1); similar to hypothetical protein DDBDRAFT_0205731 [Dictyostelium discoideum AX4] (GB:XP_641804.1); similar to Os07g0484300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059649.1); contains InterPro domain Ubiquitin system component Cue; (InterPro:IPR003892); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.219956983294348 2.39811659705091 0.0418929717622983 1 3.02715388007423 13.0617844571001 0.219956983294348 0.089730494121696
AT1G48110_at 6.54600977596905 6.84519371439632 7.05003251441456 6.96498228414594 7.12182679474356 6.42971016631834 6.98221423364439 7.2307495504847 6.88780392941649 6.52272328731153 7.30278389709965 7.73637390331986 7.1307937571661 7.5183355628419 7.25594748499515 7.48261433176683 7.00579430541402 6.9575519840158 6.77575170622842 0.207998081231227 0.205513100904403 0.212468173901754 0.215797389872828 0.209340040990199 0.208440393190802 0.213252326772682 0.211392816101585 0.219288055710765 0.204902748395520 0.207872395135198 0.205954316329044 0.203286750446814 0.219995579990011 0.212248680558292 0.203286750446814 0.242175946978162 0.207400836415597 0.205114408300909 1 1 - 17774011 17774445 17774159.273 17773607 17777136 - gene protein_coding_gene FALSE TRUE AT1G48110.1 ECT7 (evolutionarily conserved C-terminal region 7) similar to ECT6 (evolutionarily conserved C-terminal region 6) [Arabidopsis thaliana] (TAIR:AT3G17330.1); similar to rubisco subunit binding-protein beta subunit-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73484.1); similar to Os03g0317000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049941.1); similar to Os01g0679900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043869.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.280305441811958 2.39735135462106 0.041944085372458 1 3.02605714329442 13.9101069014210 0.280305441811958 0.138177381847496
AT3G45740_at 4.58606142468457 5.07134013727583 4.98900869420342 5.09081732573861 5.27767152940696 5.06325879535575 4.88729369108453 4.85840808343121 4.49135641217268 4.51634343579748 4.98706760239417 4.9440377419603 4.66433024092878 4.81754729953028 5.19302732452527 4.57219197728206 4.63945916455276 4.88218249378492 4.92272177604163 0.211613273101416 0.204628213112066 0.203746779084217 0.213836018413334 0.206090461278451 0.219634043674724 0.207091273770045 0.209192660182658 0.213738831670684 0.212124527257775 0.204819112866247 0.205799267642464 0.208573606272705 0.205911548078547 0.211692547533863 0.205249378742947 0.202356419971959 0.211819055990076 0.202356419971959 3 0|3 /|+ 16803424 16804233 16803895.75 16801746 16804519 + gene protein_coding_gene FALSE TRUE AT3G45740.1 hydrolase family protein / HAD-superfamily protein similar to Peptidase S26A, signal peptidase I; HAD-superfamily hydrolase, subfamily IIA [Medicago truncatula] (GB:ABE81736.1); contains InterPro domain HAD-superfamily subfamily IIA hydrolase, CECR5; (InterPro:IPR006353); contains InterPro domain HAD-superfamily hydrolase, subfamily IIA; (InterPro:IPR006357) 0.224209929003186 2.39658296704157 0.0419954717858939 1 3.02495593626121 9.71845963779282 0.224209929003186 0.0936204339371725
AT1G63940_at 8.91403739871588 9.03583984319389 8.51766444813662 8.61308280618 8.61410715674873 8.39437153589868 9.52134585785998 9.63015977659623 8.86694614234125 8.95177103757115 9.28823651494606 9.76531793194614 8.91037225187112 9.29706928732973 9.77640096963848 8.86390888109307 8.64634562092774 9.36849998923579 8.7708446310961 0.107548886983298 0.108671998354338 0.123503603459907 0.111844240771199 0.106682595191827 0.116572871138816 0.111161945389641 0.109456869014157 0.109721793157796 0.109374023419958 0.103768647514306 0.108926393761841 0.106564391337107 0.111776027062475 0.108708589547499 0.106014329861772 0.120065380842787 0.105727515951060 0.108139442512722 1 1|0 +|/ 23735939 23737171 23736445.375 23733642 23737555 + gene protein_coding_gene FALSE TRUE AT1G63940.1|AT1G63940.2|AT1G63940.3|AT1G63940.4 monodehydroascorbate reductase, putative Identical to Monodehydroascorbate reductase, chloroplast precursor (EC 1.6.5.4) (MDAR) [Arabidopsis Thaliana] (GB:P92947;GB:Q94CE2;GB:Q9CAK5); similar to monodehydroascorbate reductase, putative [Arabidopsis thaliana] (TAIR:AT5G03630.1); similar to monodehydroascorbate reductase [Spinacia oleracea] (GB:BAB63925.1); similar to monodehydroascorbate reductase [Brassica juncea] (GB:AAD28178.1); similar to monodehydroascorbate reductase [Brassica oleracea] (GB:BAD14933.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027)|Identical to Monodehydroascorbate reductase, chloroplast precursor (EC 1.6.5.4) (MDAR) [Arabidopsis Thaliana] (GB:P92947;GB:Q94CE2;GB:Q9CAK5); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] (TAIR:AT3G52880.1); similar to monodehydroascorbate reductase [Spinacia oleracea] (GB:BAB63925.1); similar to monodehydroascorbate reductase [Brassica juncea] (GB:AAD28178.1); similar to monodehydroascorbate reductase [Brassica oleracea] (GB:BAD14933.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.182103785906565 -2.39584970090911 0.0420445681080637 1 3.02390509819715 17.9564292035211 -0.182103785906565 0.0501753220723995
AT3G60260_at 6.23764749446267 5.91699851018721 5.14449564603044 4.70984092242176 5.67939497381675 4.72453721463447 5.12830612755353 4.67097789537878 4.66038334396255 4.25447324280723 4.28826588291289 4.21625541130605 4.08898589693119 4.44541181422344 4.36260129780731 4.31173085218813 4.01792387880364 4.19736182861976 4.79507265935472 0.217311822621709 0.216245862650281 0.214343423877739 0.217045581009557 0.214343423877739 0.219258371022492 0.222848633917063 0.214343423877739 0.221674914080738 0.219034068359185 0.219243587856922 0.214343423877739 0.215637732466175 0.226004269618866 0.219363753469617 0.214343423877739 0.225972866668272 0.214343423877739 0.220923382106619 3 3|0 +|/ 22286296 22287782 22286940.6 22284818 22288123 + gene protein_coding_gene FALSE TRUE AT3G60260.1|AT3G60260.2|AT3G60260.3|AT3G60260.4 phagocytosis and cell motility protein ELMO1-related similar to phagocytosis and cell motility protein ELMO1-related [Arabidopsis thaliana] (TAIR:AT2G44770.1); similar to Os04g0545100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053465.1); similar to Os02g0652300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047599.1); similar to phagocytosis and cell motility protein ELMO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93689.2); contains InterPro domain Engulfment and cell motility, ELM; (InterPro:IPR006816) -0.376412312597737 -2.39381191119692 0.0421813111320114 1 3.02098493799111 9.68204660967264 -0.376412312597737 0.205683527315274
AT1G67930_at 6.25258092192404 6.64865885198478 5.68580208878007 6.09399099108403 6.1633548843159 6.31924397336172 6.80225290617685 6.9227014021483 6.59250759995428 6.42626944918943 6.91546255295195 7.06145232023965 6.13096597098297 6.4368563440859 7.05625048745122 6.47767187484983 5.60041844709446 6.58155617123883 6.22321625138827 0.236259544489008 0.236853111775132 0.245345725427621 0.240661937471716 0.236903202351415 0.246656204754817 0.230205154814382 0.233613079743870 0.253497733535955 0.247560346540262 0.237269119462092 0.229457345682703 0.233466532307874 0.235898297329481 0.244585379323617 0.233203824291324 0.260887502183706 0.2370372640572 0.252765290183617 1 1 - 25477917 25478433 25478248 25477803 25481086 - gene protein_coding_gene FALSE TRUE AT1G67930.1 Golgi transport complex protein-related similar to Os05g0378900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055390.1); similar to component of oligomeric gol (GB:NP_006339.2); contains InterPro domain Steroid nuclear receptor, ligand-binding; (InterPro:IPR008946) -0.236184515952602 -2.39248151364409 0.0422708253120754 1 3.01907861760225 12.8343617714499 -0.236184515952602 0.104164699333159
AT4G00370_at 9.37190500421192 9.39955998627114 9.35225914920525 9.23101429145176 9.11041371245631 9.08497269134104 9.75890284565494 9.70486323045166 8.91021492929957 9.39962108239098 8.99785196826017 9.33735402673006 9.1738402085149 9.13120764728971 9.18197203721857 9.44701374310866 9.39820653193334 8.84815017386999 9.1653128468701 0.111683390246636 0.112816748872560 0.121681509581908 0.115157935667365 0.112515167927002 0.124778963060283 0.115008217002562 0.112361443842016 0.117332979352885 0.122236216437082 0.112602618592393 0.114027413168004 0.116144210858506 0.111683390246636 0.117386224544392 0.115685901839753 0.117842334780042 0.122297736433316 0.120440674993658 4 4|0 -|/ 163177 164447 163843.125 162897 166357 - gene protein_coding_gene FALSE TRUE AT4G00370.1 ANTR2 (anion transporter 2); organic anion transporter similar to inorganic phosphate transporter, putative [Arabidopsis thaliana] (TAIR:AT2G29650.1); similar to Na+/Pi transporter [Thellun (GB:ABK51380.1); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE91392.1); similar to Os09g0570400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063986.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.166538108135848 -2.39141702402708 0.0423425848840628 1 3.01755339807178 18.5506526113651 -0.166538108135848 0.023874419168723
AT2G25710_at 6.67391750611584 6.73513048220221 6.706112817442 6.71266689508751 7.21363133628911 6.89199469488106 7.1381074307681 6.95661828244742 5.0600841782402 5.78388086652481 5.88929617598162 6.0793470161374 5.85140069398235 5.97506456025489 6.11439311008843 6.1439374527188 5.84180942263198 5.16650572583551 5.65680082114665 0.232650428256921 0.234632468288078 0.231125203709686 0.231622592004029 0.231125203709686 0.236777113151817 0.234806114090200 0.237021589047452 0.255353621770055 0.242725521844522 0.242109211935218 0.236009000062241 0.240451595632127 0.236569132560831 0.235792574345609 0.231125203709686 0.242295803219102 0.239656231965834 0.241746893167888 2 2|0 +|/ 10960656 10961933 10961149 10959639 10962455 + gene protein_coding_gene FALSE TRUE AT2G25710.1|AT2G25710.2 HCS1 (HOLOCARBOXYLASE SYNTHASE); catalytic Encodes holocarboxylase synthase. similar to holocarboxylase synthetase 2 (HCS2.d) [Arabidopsis thaliana] (TAIR:AT1G37150.2); similar to Os02g0167000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046003.1); similar to putative holocarboxylase synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD26236.1); contains InterPro domain Biotin protein ligase, C-terminal; (InterPro:IPR003142); contains InterPro domain Biotin/lipoate A/B protein ligase; (InterPro:IPR004143); contains InterPro domain Biotin--acetyl-CoA-carboxylase ligase; (InterPro:IPR004408) 0.193810995804090 2.38972119300494 0.0424571560546933 1 3.01512373411631 12.5700097098247 0.193810995804090 0.0647923743451409
AT1G22450_at 8.89798727713982 8.8267746019869 8.87629762709306 8.9763517383561 8.38332643119548 8.75235432049887 8.90789938539145 8.853264475151 8.04929928485902 8.28356880895126 8.56348324161142 8.96651025586464 8.4503739415899 8.36858674535131 9.10844966274253 8.52788993089256 8.62147455025297 8.61502496819601 8.0717076631743 0.121704074657940 0.122970136493766 0.117407555638897 0.122999274298647 0.116282215697449 0.123379607533244 0.118615567646208 0.127795896293049 0.132688268928222 0.123135125992109 0.119349590084872 0.119005848490898 0.117209174559701 0.127398421145216 0.122624967309205 0.118073868288217 0.120580144768966 0.119345992632946 0.127532359740470 1 1|0 +|/ 7925441 7926876 7926232.625 7925110 7927267 + gene protein_coding_gene FALSE TRUE AT1G22450.1 COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase subunit 6b of cytochrome c oxidase similar to cytochrome c oxidase subunit 6b, putative [Arabidopsis thaliana] (TAIR:AT5G57815.1); similar to putative cytochrome c oxidase subunit [Triticum aestivum] (GB:AAM92706.1); similar to Os03g0390400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050275.1); contains InterPro domain Cytochrome oxidase c, subunit VIb; (InterPro:IPR003213) 0.196733335384863 2.3895765190756 0.0424669446227047 1 3.014916464506 17.2030733559637 0.196733335384863 0.0679663521227075
AT3G53420_at 12.6905461206611 12.8843735156705 13.3326379816311 13.4750257270392 13.4073830081784 13.3289819311802 13.7862760465289 14.0031858411928 13.4548341192306 13.9012361068807 14.1862443991762 14.0171066508268 14.1295406799437 13.9580474136385 13.9486569961380 14.0127360049633 13.9564241987987 14.1646420551971 13.7937159608712 0.0667970521258023 0.0658106417258011 0.0686044675666488 0.0683630874084717 0.0647101153511413 0.0719738372335392 0.067000848750912 0.0671716791957752 0.0765836580651623 0.066039240265097 0.0705928317212079 0.0656063979333128 0.0671488096222274 0.066338935279096 0.0669299311059517 0.0650483729303706 0.0698714948919816 0.0702198500903785 0.0687716565517595 3 3 - 19814912 19815611 19815327.545 19814633 19816691 - gene protein_coding_gene FALSE TRUE AT3G53420.1|AT3G53420.2 PIP2A (plasma membrane intrinsic protein 2;1); water channel|PIP2A (plasma membrane intrinsic protein 2;1) a member of the plasma membrane intrinsic protein subfamily PIP2. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed specifically in the vascular bundles and protein level increases slightly during leaf dev Identical to Aquaporin PIP2.1 (Plasma membrane intrinsic protein 2a) (PIP2a) (PIP2.1) [Arabidopsis Thaliana] (GB:P43286); similar to PIP2B (plasma membrane intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT2G37170.1); similar to plasma membrane intrinsic protein 1 [Brassica napus] (GB:AAD39373.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.187495592584179 2.38853818826941 0.0425372637696223 1 3.0134289223246 27.2451863692583 0.187495592584179 0.0576664042646462
ATMG00640_at 3.22399203184458 4.86507811035139 5.32512524191599 5.95482623985928 5.58262625399391 6.62053085983194 4.1985440568126 5.73037368136049 4.83605060377038 4.73243381065252 5.19667122473641 3.52978011854226 5.31964349116252 4.79651879439393 3.28140059282474 5.85926082051054 6.30507144663547 4.79959442625348 4.71407877319535 0.298375000273945 0.274212038021885 0.268330449466537 0.277604692742940 0.279766480999608 0.27273581562208 0.273059572457348 0.272269185473668 0.285231146509408 0.269061307919837 0.274144243363122 0.272921157689823 0.272364817203621 0.28014235802091 0.307530950077554 0.273954426310657 0.274087846178915 0.2825408790651 0.268477190863582 M M - 188160 188595 188356.273 188084 188662 - gene protein_coding_gene FALSE TRUE ATMG00640.1 encodes a plant b subunit of mitochondrial ATP synthase based on structural similarity and the presence in the F(0) complex. similar to Uncharacterized mitochondrial 22 kDa protein AtMg00640 (ORF 25) (GB:Q04613); contains InterPro domain ATPase, F0 complex, subunit B, mitochondrial; (InterPro:IPR008688) 0.745709198658843 2.38849845283305 0.0425399570925367 1 3.01337199762337 10.0110605646239 0.745709198658843 0.441660280761909
AT4G15110_at 9.19746937227467 9.26335671127227 8.78091038332043 8.75327750474015 9.26813174533992 8.61403825289377 9.73301003471938 9.32911274413865 9.3131619472013 9.61645396028878 9.64301026798032 9.87842440292 9.25394956614681 9.42897319297873 9.58843746928487 9.12472104410188 9.05182997911391 9.46819489960007 9.41832957635889 0.138561225308465 0.12759734759846 0.142599919179118 0.134781637667014 0.130166074171043 0.140432810363360 0.129397871132694 0.129723115034136 0.146640802638033 0.132094102223570 0.131970679105825 0.128139830839244 0.126620481121042 0.140863423720758 0.139734004045852 0.129350854112595 0.135937442770865 0.136929354275139 0.126620481121042 4 4 - 8629960 8630900 8630321 8629770 8633047 - gene protein_coding_gene FALSE TRUE AT4G15110.1 CYP97B3 (cytochrome P450, family 97, subfamily B, polypeptide 3); oxygen binding member of CYP97B Identical to Cytochrome P450 97B3 (EC 1.14.-.-) (CYP97B3) [Arabidopsis Thaliana] (GB:O23365;GB:Q8W4B8); similar to CYP97A3/LUT5 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3), carotene beta-ring hydroxylase/ oxygen binding [Arabidopsis thaliana] (TAIR:AT1G31800.1); similar to Cytochrome P450 97B2 (GB:O48921); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94036.1); similar to putative cytochrome P450 [Oryza sativa (japonica cultivar-group)] (GB:BAD26183.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.273135151272419 -2.38825160025600 0.0425566929189845 1 3.01301836072906 18.5569172256118 -0.273135151272419 0.133608515603143
AT1G26230_at 6.36874500894677 6.22896174957859 5.68415945291873 4.9926281539036 6.3681470613446 5.83561385539988 6.99482214131667 6.53397729940458 5.35784345288813 6.26417053771577 5.45947195587 6.45312015755079 5.64555803454853 5.82015933048867 6.61800355144667 6.84313334567602 6.66657076977892 5.37987037098803 6.23768375378501 0.225997126797121 0.222562852103823 0.221147288854046 0.22560908744328 0.218955170711871 0.223423712430041 0.220978266267925 0.228109410532254 0.224583849970380 0.231945011014088 0.224668679086560 0.223417823118056 0.223003217955356 0.218955170711871 0.225355242178676 0.22110435231939 0.221968893012726 0.228082458716238 0.220988172208744 1 0|1 /|- 9072375 9073043 9072589.6 9072375 9075266 - gene protein_coding_gene FALSE TRUE AT1G26230.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G13470.1); similar to CPN60B (CHAPERONIN 60 BETA), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT1G55490.2); similar to ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT5G56500.2); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P08927); similar to RuBisCO large subunit-binding protein subunit beta, chloroplast precursor (60 kDa chaperonin subunit beta) (CPN-60 beta) (GB:P21241); similar to chaperonin-60 beta subunit (GB:AAB39827.1); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain chaperonin GroEL; (InterPro:IPR012723) -0.32699303041973 -2.38795885252980 0.0425765488170054 1 3.01259898043222 12.1578661008549 -0.32699303041973 0.172510805292473
AT2G33530_at 9.12620854013396 9.5646528911473 9.17662061483178 9.45099882633548 8.4837388166084 8.38055542339793 8.79418143747003 9.05212494750419 8.93041836678325 8.7885408137463 8.41060746010724 8.75913350441107 8.42884533825886 8.60606748976138 8.30171364386592 8.59236813880177 8.71708002790658 8.88568346575072 8.65549186061309 0.147620601972495 0.145854949343774 0.149667120313666 0.147880439386274 0.144004078888251 0.156984439818539 0.147340978693277 0.141791618258358 0.148022484801303 0.144007699046848 0.165319184159379 0.143101327735029 0.148391805614402 0.150295172817329 0.154241752059372 0.145925852537564 0.149757926270613 0.141076011171855 0.141876117499699 2 2|0 -|/ 14204960 14205859 14205311.4 14204722 14207633 - gene protein_coding_gene FALSE TRUE AT2G33530.1 SCPL46 (serine carboxypeptidase-like 46); serine carboxypeptidase similar to SCPL45, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT1G28110.2); similar to Os04g0396800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052663.1); similar to Serine carboxypeptidase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93967.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.232554915271705 -2.38666343058254 0.0426645231989421 1 3.01074327185985 17.6932207191730 -0.232554915271705 0.101602177726370
AT1G53050_at 7.45752189798154 7.74059311217497 6.83243566209146 6.76066175840021 7.69108817750078 7.310209954534 7.67699577837692 7.68352918687581 7.1025366387297 7.44249281158946 7.69398635252412 7.73989395078805 7.55269787354767 7.57897613984268 7.33896637882416 7.67521957331208 6.99276314986888 7.14013841427175 7.64376714589111 0.179297515611499 0.178854475270152 0.179269133069133 0.172844048853276 0.171967560456290 0.181194495261456 0.179801649615924 0.179350172635055 0.187947178801184 0.177890956929305 0.179884013222185 0.171967560456290 0.183221454098977 0.183860175382747 0.176573603027094 0.171967560456290 0.182839988152106 0.177803286910109 0.175001839234953 1 1 + 19778523 19779146 19778794.636 19775713 19779415 + gene protein_coding_gene FALSE TRUE AT1G53050.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G09600.1); similar to Os08g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060831.1); similar to putative CRK1 protein(cdc2-related kinase 1) [Oryza sativa (japonica cultivar-group)] (GB:BAC20085.1); similar to Os01g0201000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042320.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.21162320433418 -2.38636619410702 0.0426847346467798 1 3.01031749253866 14.8243023215882 -0.21162320433418 0.0830647445254039
AT3G14410_at 5.60889177474423 5.95170016166345 5.96941130170317 5.41239401941104 6.44667073814839 6.20621829157611 5.86350803712651 5.65921553964516 5.70478513326726 5.28975172454186 5.96000749103672 5.50846463577889 5.68782041775810 5.94277446987194 6.08991525889128 5.22444548949052 5.77757315185844 5.69408911824563 5.35218021251123 0.197281153379258 0.190571658638018 0.190177103897618 0.195986926869374 0.189189422327101 0.200642316220766 0.189327127654137 0.197502963614780 0.206209911824762 0.190821268453950 0.188973267105412 0.199778590692127 0.188100633070146 0.189460769617113 0.187136267014166 0.189710368313536 0.200750617276039 0.192049351573396 0.189614251767579 3 3|0 -|/ 4816265 4816634 4816402.556 4815818 4817987 - gene protein_coding_gene FALSE TRUE AT3G14410.1 transporter-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G53660.1); similar to Os08g0135100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060938.1); similar to putative phosphate/phosphoenolpyruvate translocator [Sorghum bicolor] (GB:AAL73533.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.262287636712251 2.38450478053894 0.042811524444916 1 3.00765122667513 11.4820222051139 0.262287636712251 0.125668985197684
AT1G48920_at 9.92192417069442 10.2046491975920 9.7986067266939 9.84513545730442 9.7132441050375 9.44781296924643 9.9456213459285 10.2846945591254 9.27105375285236 9.58600976511374 9.36901304624154 9.69913887499227 9.22809583050863 9.30172067555483 9.66183760410704 9.3982266707702 9.28053268374566 9.19562800275215 9.46476093173861 0.134779062082999 0.137828717611628 0.139219153377199 0.133293398590590 0.137128025433691 0.14656957441317 0.138911865731065 0.134236007950904 0.140826567066696 0.143921489037132 0.137804909641436 0.136446581170827 0.147947132182688 0.145291581872841 0.138942306579649 0.138098517903208 0.139676698268874 0.143762086986795 0.138718462536511 1 1|0 +|/ 18104209 18105066 18104629.444 18101763 18105291 + gene protein_coding_gene FALSE TRUE AT1G48920.1 nucleolin, putative The predominant form of the two nucleolin genes in Arabidopsis. Plays a role in ribosome synthesis. Knock-out mutant plants accumulate increased level of unprocessed rRNA. The sugar-induced expression of ribosome proteins are reduced in the mutants. similar to ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G18610.1); similar to tobacco nucleolin [Nicotiana tabacum] (GB:BAC02896.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.218428240041030 -2.38413746928913 0.0428365881709136 1 3.00712512204583 19.3114022281956 -0.218428240041030 0.0895083649003184
AT3G22520_at 6.85833939244722 7.39601214508251 6.83755665487267 7.0161218392352 7.18878934295098 6.8986007947864 7.42171022018163 7.61366712624751 6.14335322967474 5.81835248675829 6.3341450098999 5.99568385898669 6.18066123422658 5.28071720919739 6.38807499862495 6.46928712997468 5.88280378546781 5.78790419633519 6.63840917188592 0.276629523148668 0.280857708069016 0.272484596123295 0.277623231909701 0.269893769263415 0.283263933166487 0.269893769263415 0.279798548942137 0.288626882783021 0.274127780452605 0.275376611133633 0.269893769263415 0.269893769263415 0.284706678241810 0.275511494581262 0.269893769263415 0.277758730101570 0.278470659477624 0.273379015014110 3 3 + 7976834 7977381 7977118.364 7974769 7977597 + gene protein_coding_gene FALSE TRUE AT3G22520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14840.1); similar to CDPK adapter protein 1 [Mesembryanthemum crystallinum] (GB:AAK69758.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.248646840647786 -2.3835028513581 0.0428799262780518 1 3.00621617205449 13.2738236764482 -0.248646840647786 0.115056543555637
AT3G27050_at 8.50482496636973 9.0045026250273 8.39856789634762 8.45036029048333 9.2198398033254 8.40506594082604 10.0033842635788 9.6426072975647 9.48148590999866 9.8208139998046 9.9922513374062 9.89385792815996 9.42901218403064 9.87442137368296 9.48907470569031 9.9723686512006 9.10455583046693 9.24741281976905 9.55871416850293 0.159091898372478 0.156102958266975 0.159256944774438 0.163238762854551 0.153508046115802 0.163520251906468 0.154559029964988 0.150047955036560 0.160885704409572 0.153997833851212 0.154210127136348 0.154987055253471 0.153952375643480 0.153806055809067 0.16338924060157 0.149438438824475 0.159767320648737 0.157251341725034 0.155728090545767 3 3 - 9979528 9980804 9980108.727 9979332 9980936 - gene protein_coding_gene FALSE TRUE AT3G27050.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93800.1) -0.332669988845381 -2.3821840195072 0.0429701294887673 1 3.00432732393691 18.5764978253918 -0.332669988845381 0.177022037161044
AT2G31070_at 6.71457884544173 7.66193764011068 6.92478064747071 6.96028465242467 8.00275257937451 7.1067639499692 8.86168886943758 8.91171883724252 7.61037661590873 7.76366789311584 8.14663563674288 7.86136388214166 8.39216180779771 7.88338596834219 6.72674046922066 7.80153845244683 6.66901569646021 6.80977009479208 7.29603759143927 0.244733556557005 0.239725057530940 0.243092205978058 0.241448009573929 0.251117085044420 0.241357483976589 0.24868070414786 0.24370357629575 0.236374975918317 0.243371232487715 0.238111209837642 0.241422113880443 0.241581585669363 0.256324495277382 0.255800863292153 0.241418214457631 0.256871331259721 0.245050663143439 0.241384179200358 2 2 - 13228087 13228595 13228339.273 13227555 13229686 - gene protein_coding_gene FALSE TRUE AT2G31070.1 TCP10 (TCP domain protein 10); transcription factor similar to TCP4 (TCP family transcription factor 4, maternal effect embryo arrest 35), transcription factor [Arabidopsis thaliana] (TAIR:AT3G15030.2); similar to TCP transcription factor [Medicago truncatula] (GB:ABE91915.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) -0.404601561621636 -2.38076256115377 0.0430675641305843 1 3.00229162526762 15.1895735199244 -0.404601561621636 0.225904145082444
AT1G28580_at 8.8810195278546 8.9083573482611 8.51067301623488 8.72820891423684 9.06068951509762 8.86722393228984 7.32508804354492 7.58106351744652 7.53780094456274 7.49238134648669 6.96996576245738 7.23511153447451 7.29232638267284 7.39260260542221 7.13140316016211 7.37889217384536 7.20621452558776 7.1837023092159 7.32272290552951 0.152865321229274 0.150807258028476 0.153742449649079 0.149871476323963 0.152875836901291 0.162054721674253 0.152304450951540 0.153935288003868 0.162320883858899 0.154112910401475 0.15793167493232 0.149515931000081 0.154832353838136 0.157264556158996 0.158992693626417 0.151098952490599 0.16856837252704 0.157994703664837 0.156930966612579 1 1 - 10044613 10045311 10044850.818 10044323 10046428 - gene protein_coding_gene FALSE TRUE AT1G28580.1|AT1G28580.2 GDSL-motif lipase, putative similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28570.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.195312821529062 2.38041794874706 0.0430912189772437 1 3.00179811980498 15.8201633296655 0.195312821529062 0.067251633743624
AT1G55370_at 7.182057737009 7.64628774265113 6.81802782500681 6.7086904282517 8.02415165361531 7.19999363764994 8.63059379324785 8.14433183133152 8.27375793389037 8.72004493420687 8.58160197067037 8.8324747569843 8.11296793085187 8.64152583388103 9.04663665120091 8.96582867632077 8.56377236149663 8.43639119957504 8.87331549436 0.182016281823107 0.175891237405501 0.192520282897601 0.186358141620785 0.172769750079207 0.184077139855802 0.199060371284952 0.181127162254840 0.189582631813715 0.172769750079207 0.172769750079207 0.178642418403354 0.176837754944869 0.181678773475561 0.180238620045778 0.179327560093103 0.186684963662644 0.191768058065425 0.185060287189803 1 1 + 20679164 20679698 20679416.8 20678449 20680115 + gene protein_coding_gene FALSE TRUE AT1G55370.1|AT1G55370.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64770.2); similar to Os03g0748300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051267.1); similar to Os03g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049021.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G64770.1); similar to Os03g0748300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051267.1); similar to Os03g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049021.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN06836.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013) -0.343912377396031 -2.37991079434789 0.0431260546051822 1 3.00107185935003 16.1792781861496 -0.343912377396031 0.185027024325272
AT3G56490_at 8.3376556908656 8.49518408752684 8.52454135655873 8.47836150435687 8.3836860944752 8.43094165650591 8.09694695398287 8.40843706065453 7.93780794732288 8.10323512205705 8.19285921070678 8.19244812975417 8.36168786849565 8.33209818393427 8.40470532950716 8.42480925386877 8.15236237814509 8.33677666499715 8.07733712151275 0.134824411960127 0.131873187817575 0.132864178243605 0.133774657330219 0.129888703006113 0.136150379815867 0.131840790272064 0.136984562565887 0.142735832611279 0.132904832481009 0.133944091993006 0.127668245699753 0.131863775546331 0.127668245699753 0.129877778854238 0.129804186027463 0.13821768047822 0.133322797861582 0.136405408189418 3 3|0 +|/ 20952511 20954079 20953298.375 20952481 20954448 + gene protein_coding_gene FALSE TRUE AT3G56490.1 zinc-binding protein, putative / protein kinase C inhibitor, putative similar to zinc-binding protein, putative / protein kinase C inhibitor, putative [Arabidopsis thaliana] (TAIR:AT1G31160.1); similar to Histidine triad (HIT) protein [Medicago truncatula] (GB:ABE83728.1); contains InterPro domain Histidine triad (HIT) protein; (InterPro:IPR001310) 0.190042509255977 2.37957655488792 0.0431490283493306 1 3.00059322798107 16.5640585211443 0.190042509255977 0.0614787377670684
AT3G58760_at 6.4245404152761 6.0456387021135 6.41579383114442 6.07252015388179 6.59738336732301 6.06108890195822 6.13592934154576 5.40466508625161 5.15824512149294 5.52599676700705 6.28926795229613 6.07141126294806 5.32350349437736 6.02109859320905 5.87031409988656 5.67779062273555 5.95740591635085 5.42431704564931 5.63532133103553 0.216720999033163 0.203760934413033 0.213684804491608 0.201843061269577 0.206312671126706 0.205346914817647 0.205571905767927 0.205018422758309 0.202068959547937 0.204470981958636 0.201000969800644 0.206345946182046 0.220186355600648 0.211885457952107 0.205524707946647 0.204884276506106 0.21738324034181 0.205382438543388 0.206774931199798 3 3|0 +|/ 21741525 21742691 21742227.333 21739691 21742905 + gene protein_coding_gene FALSE TRUE AT3G58760.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G18950.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06435.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.336768697099942 2.37922802463174 0.0431729973742991 1 3.00009414035868 11.7793164899085 0.336768697099942 0.180156678334947
AT2G03150_at 7.02542419596997 7.35496461227896 7.05900529242967 7.02554033852123 7.11433720006233 6.74720838292022 7.02266958942586 6.92507005518158 6.98420965543443 7.27288491861722 7.16864670986744 7.18319563250661 6.66820048960108 6.93497063626957 6.61770352357786 7.07576309795552 6.64426947617639 6.55860202677183 7.31799640885813 0.192576095085598 0.193675863632381 0.199228273342788 0.192639900461812 0.200365160872058 0.205410548042039 0.196681211400509 0.193035521578893 0.21173040049556 0.189361725055764 0.189593712429749 0.194383047464825 0.194425031768876 0.204182460905529 0.206490717140571 0.200502274274419 0.204567406454853 0.193881655586957 0.198598952558337 2 2|0 +|/ 958104 958917 958515.75 951930 959162 + gene protein_coding_gene FALSE TRUE AT2G03150.1 EMB1579 (EMBRYO DEFECTIVE 1579); binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to calmodulin-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53749.1); similar to Os06g0562700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057877.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.215393677471599 -2.37844572984947 0.0432268455382403 1 2.99897394202347 14.0583354300458 -0.215393677471599 0.0872212719194356
AT2G29650_at 11.0290696168746 11.0917456637541 11.2723528883398 11.1535828729376 11.3387397640041 11.1371328531469 11.8486974692163 11.9126216939355 11.7541869329831 11.6361397545308 11.6855105355920 11.5086503750006 11.6247652298821 11.7513159096352 11.1856161814649 11.6629920358580 11.3048601544991 11.5691694912236 11.539590729421 0.0690529901410625 0.0656507407350954 0.0696766144931932 0.0669537667289048 0.0656507407350954 0.0670749090314475 0.06968952894749 0.0676509772072171 0.0723392048012778 0.0656507407350954 0.0677231186001186 0.066812156669285 0.0676457594522533 0.0679435910534512 0.066534392358447 0.0665025924637483 0.0770990718698258 0.0657852897258857 0.066073719482664 2 2 - 12680797 12681718 12681219.273 12680460 12683126 - gene protein_coding_gene FALSE TRUE AT2G29650.1|AT2G29650.2|AT2G29650.3 inorganic phosphate transporter, putative similar to ANTR2 (anion transporter 2), organic anion transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to Na+/Pi transporter [Thellun (GB:ABK51380.1); similar to Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE91392.1); similar to Os01g0279700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042749.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701)|similar to ANTR2 (anion transporter 2), organic anion transporter [Arabidopsis thaliana] (TAIR:AT4G00370.1); similar to Na+/Pi transporter [Thellun (GB:ABK51380.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.175888666419275 -2.37742611393911 0.0432971300111202 1 2.99751397787810 22.9379507501708 -0.175888666419275 0.0433557218463463
AT2G02230_at 5.72248987024452 6.26733574982338 6.47595028244785 6.38697753773763 6.02546746427912 6.0563593751501 6.48345605240547 6.34877955644247 5.36997409555192 5.07847690943927 5.14872186245822 5.88423898855762 5.22897459685668 5.43624632152952 5.77604171319927 5.56724144310782 5.6842988783557 5.52252405880851 4.86913272908869 0.202055071299157 0.203837928134548 0.204450973645042 0.202787181547608 0.204844007196459 0.206028182064801 0.223899214962802 0.201893577625898 0.212991944670128 0.212445402227505 0.198629418189401 0.198629418189401 0.215634440283692 0.205431277482218 0.213750343088434 0.203532535607124 0.210587103026309 0.219668861968361 0.220744568520463 2 2 - 590576 591076 590823.727 590220 591649 - gene protein_coding_gene FALSE TRUE AT2G02230.1 ATPP2-B1 (Phloem protein 2-B1) similar to MEE66 (maternal effect embryo arrest 66) [Arabidopsis thaliana] (TAIR:AT2G02240.1); similar to Os02g0813300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048484.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE85685.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.227924047920298 2.37662154490770 0.0433526713101212 1 2.99636198528328 11.5393005998425 0.227924047920298 0.0984839557172954
AT1G07380_at 5.10257667063279 5.52231572385466 5.54139952179196 5.71265648488342 6.54128280109808 6.73931324165053 4.83255612552113 4.98603089305148 4.62987129336016 4.6879888735514 3.61660839651630 3.87221205515903 4.31272905954841 4.44423403888634 3.90057677899277 3.84917631057847 4.49942135382859 4.42405536869762 4.78796687559712 0.240267365466909 0.242020228112521 0.242864464670487 0.242411176025582 0.246948679565209 0.245094480966771 0.253683643125907 0.242202792619328 0.246893021239926 0.240267365466909 0.246863447391055 0.247498767692939 0.240267365466909 0.240703070337434 0.244758294067820 0.240267365466909 0.256916154825759 0.240828963450727 0.240267365466909 1 1 - 2264837 2265734 2265224.636 2264827 2268304 - gene protein_coding_gene FALSE TRUE AT1G07380.1 ceramidase family protein similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT5G58980.1); similar to ceramidase family protein [Arabidopsis thaliana] (TAIR:AT2G38010.1); similar to Os01g0624000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043618.1); similar to Neutral/alkaline nonlysosomal ceramidase [Medicago truncatula] (GB:ABE89511.1); contains InterPro domain Neutral/alkaline nonlysosomal ceramidase; (InterPro:IPR006823) 0.217863740932017 2.37644673158934 0.0433647484863411 1 2.99611169122110 10.0306759416999 0.217863740932017 0.0896350291982594
AT1G30210_at 6.71416825944522 6.83868202189803 5.99284796705905 6.45045142031021 6.8805724874813 6.63817902337543 6.50613251180529 6.29355909814571 5.75646161212335 6.44084328167963 7.09664374594111 7.20299013343383 6.69127227727846 6.80395855379256 7.1875713278661 6.36602844272961 5.86126713745158 6.74870997458685 6.37190317305412 0.188394179761478 0.186951147801754 0.202738416845035 0.200619983470464 0.187362613535077 0.192739668416947 0.186951147801754 0.204448037392186 0.212141756504995 0.194915505319412 0.190527683160338 0.191399885009337 0.189974921005037 0.198303742036006 0.195999569062484 0.187412178331566 0.195289999612894 0.197135792911465 0.193386199512226 1 1 - 10628754 10629286 10629005 10627169 10630594 - gene protein_coding_gene FALSE TRUE AT1G30210.1|AT1G30210.2 TCP24; transcription factor similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT4G18390.2); similar to putative transcription factor [Solanum tuberosum] (GB:CAD91129.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.228723214291123 2.37579625445682 0.0434097169353908 1 2.99518037037327 13.0065947094004 0.228723214291123 0.0992384599017823
AT2G21880_at 5.15768181804861 5.33992969926972 5.40569603967436 5.27962468548257 5.67646813209229 5.20351628361823 5.58646352041034 5.44820278745392 4.85135859022917 4.91632597643449 5.90066833904426 5.0729366301695 6.01499775180293 6.49411345236912 4.84371647696823 5.23635073534285 5.50146557861393 5.39672021141706 5.59762557629696 0.227988932954288 0.230792069015853 0.230961583446302 0.235948465977302 0.226201610402806 0.228226742166283 0.229910231836144 0.231091513260431 0.237239512950784 0.229180598143354 0.232206201535173 0.231327501582849 0.226669208857495 0.230676018723918 0.240022196368866 0.231568864938615 0.237773576918627 0.229741465826848 0.229930662786279 2 2|0 -|/ 9332022 9332801 9332460.3 9331713 9333401 - gene protein_coding_gene FALSE TRUE AT2G21880.1 AtRABG2/AtRab7A (Arabidopsis Rab GTPase homolog G2); GTP binding similar to AtRABG3a, GTP binding [Arabidopsis thaliana] (TAIR:AT4G09720.1); similar to Ras-related protein Rab7 (GB:Q43463); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.222053964116829 2.37500868036218 0.0434642253864992 1 2.99405280053518 10.7268934680660 0.222053964116829 0.0934988192719434
AT1G54090_at 6.05379385725012 6.58987279676295 6.74231945130676 6.96408351306758 7.00929971236751 6.90200568105909 6.42187123526078 7.11147679720856 6.59339828608044 5.82129088324917 6.88334144929663 6.83141438430793 6.21498678259203 6.50321642376489 6.22903432336762 6.58466261231471 6.12249265038161 6.23824342217163 6.19823539022813 0.219256155018513 0.211726427677249 0.224690134974933 0.22173528541752 0.208396929333468 0.217966356629582 0.208936461457868 0.208396929333468 0.221340915326958 0.214720960175738 0.209048359099738 0.208396929333468 0.214162262888568 0.223454124657244 0.213451497694320 0.209850235930695 0.235805560606173 0.221142975204826 0.214505374014355 1 1 + 20194751 20195210 20195013.818 20193235 20195568 + gene protein_coding_gene FALSE TRUE AT1G54090.1 ATEXO70D2 (exocyst subunit EXO70 family protein D2); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70D1 (exocyst subunit EXO70 family protein D1), protein binding [Arabidopsis thaliana] (TAIR:AT1G72470.1); similar to ATEXO70D3 (exocyst subunit EXO70 family protein D3), protein binding [Arabidopsis thaliana] (TAIR:AT3G14090.1); similar to putative leucine zipper protein [Oryza sativa (japonica cultivar-group)] (GB:BAB86177.1); similar to Os08g0455700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061962.1); similar to Os09g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063276.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.303394618667507 2.37454967474422 0.0434960249238228 1 2.99339566226549 13.0519564768074 0.303394618667507 0.157053926348333
AT4G23640_at 7.11112002382429 6.88051531591166 6.55590075309054 6.8502495493847 6.87760658684705 6.87075603665277 6.46582680239563 7.11970462316649 6.45945666403742 5.97532401034369 6.92801944032555 6.70885419968301 7.05912914310555 6.75332795385359 6.87687459303684 6.8693199985934 6.96497037565807 6.43329498782099 6.11739149010753 0.180438202566053 0.179648086706279 0.185334334425669 0.177590564820825 0.175602970002613 0.181835904139532 0.187078340070635 0.180931621022946 0.187273932477388 0.182346144093232 0.175875304484295 0.175602970002613 0.175917058272763 0.185361310185443 0.17752713209903 0.181045404242339 0.175602970002613 0.185237571837236 0.182860741697079 4 4 - 12320533 12321051 12320829.636 12320162 12324496 - gene protein_coding_gene FALSE TRUE AT4G23640.1 TRH1 (TINY ROOT HAIR 1); potassium ion transporter Functions as a potassium transporter and is required for the establishment of root tip growth. Identical to Potassium transporter 3 (AtPOT3) (AtKUP4) (AtKT3) (Tiny root hair 1 protein) (POT3) [Arabidopsis Thaliana] (GB:Q9FE38;GB:O22399;GB:Q9SUR2); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to putative high-affinity potassium uptake transporter [Populus tremula x Populus tremuloides] (GB:CAC39168.1); similar to putative potassium transporter [Cymodocea nodosa] (GB:CAD20319.1); similar to potassium transporter HAK4 [Hordeum vulgare] (GB:ABE99812.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.267251494257995 2.37418944102260 0.0435209978827617 1 2.99287994178006 13.3456005737454 0.267251494257995 0.130357712149199
AT4G22570_at 10.9638940988307 10.9065874110921 12.0308975378690 11.9012192516199 11.9665704375362 11.6451727754589 12.2417830961780 12.1612514910611 12.0353916032356 12.0162649576108 12.0059010046323 11.8706133046362 12.1673743554385 12.2480704892909 11.7552578515845 12.4010712837790 12.0077508442392 12.0100653018778 11.9337717590607 0.0742659455204825 0.0710210839050904 0.0714036663078565 0.070824606919977 0.0730118184936698 0.0766149025443 0.0741148346058032 0.0719422591419699 0.0769407927685366 0.0708849037075688 0.070824606919977 0.070824606919977 0.070824606919977 0.070824606919977 0.0723377897050864 0.070824606919977 0.0780362134695631 0.0742335711547594 0.0720646110158467 4 4|0 -|/ 11882502 11885216 11883191 11882137 11885432 - gene protein_coding_gene FALSE TRUE AT4G22570.1 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1. similar to APT4, adenine phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT4G12440.2); similar to adenine phosphoribosyltransferase-like [Solanum tuberosum] (GB:ABB86271.1); contains InterPro domain Adenine phosphoribosyl transferase; (InterPro:IPR005764); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Purine/pyrimidine phosphoribosyl transferase; (InterPro:IPR002375) 0.190353128731472 2.37373180549297 0.0435527437894497 1 2.99222479138125 23.7538749263243 0.190353128731472 0.0623674965520414
AT2G46910_at 8.32120743440333 8.25057453800482 7.6165087524506 7.59017196446576 8.77450134704194 7.47264913987378 9.20906987342772 9.1116995383043 8.66705964935299 8.97239627287162 9.21084245534848 8.91980828132979 8.84173751817498 9.02299375724328 8.99352899085767 8.91507601449767 8.26885408602523 8.7111765204698 8.78690435389953 0.16856530966125 0.164655103873695 0.184857450916392 0.173814169112315 0.168928795163125 0.187569320203943 0.173822603468860 0.172580237385506 0.193997082018825 0.168221038094354 0.165811838747262 0.164655103873695 0.164655103873695 0.181900108396205 0.174863232864404 0.168467598702769 0.186777100419958 0.175305198115258 0.165970522417890 2 0|2 /|+ 19279999 19280894 19280510.444 19279350 19281071 + gene protein_coding_gene FALSE TRUE AT2G46910.1 plastid-lipid associated protein PAP / fibrillin family protein similar to plastid-lipid associated protein PAP, putative [Arabidopsis thaliana] (TAIR:AT4G22240.1); similar to fibrillin 8 [Coffea canephora] (GB:ABD39695.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.403982300395854 -2.37364295684971 0.043558909845297 1 2.99209759749819 17.1279423043472 -0.403982300395854 0.226297198202806
AT1G11780_at 5.58534333114804 5.94576853183547 5.55499675027047 5.56263663222013 5.74224325536442 5.74967589201555 5.55853816899218 5.21495518183315 4.07358253370218 4.78590641738677 4.45043322160766 5.20188635285043 4.81196741962762 4.71697389407158 4.6493933570451 4.77693909620881 5.35953329382866 4.62432651676989 4.55834677788664 0.248553542446117 0.253546496242788 0.253327355285908 0.24227115025156 0.247334320661795 0.248933292061369 0.254587422698809 0.243974288124037 0.258050218455085 0.243849384368979 0.249575569270775 0.242868237857535 0.251652676629746 0.256419578540892 0.258231291728668 0.243406105117546 0.24227115025156 0.249918599667574 0.253343150124382 1 1|0 -|/ 3977660 3978468 3978140.556 3976838 3979194 - gene protein_coding_gene FALSE TRUE AT1G11780.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein Identical to Alkylated DNA repair protein alkB homolog [Arabidopsis Thaliana] (GB:Q9SA98); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G14160.1); similar to Os11g0488500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067920.1); similar to DNA alkylation damage repair protein (ISS) [Ostreococcus tauri] (GB:CAL50217.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.213778281679062 2.37293069572833 0.0436083719362614 1 2.99107795935461 10.2625414947898 0.213778281679062 0.0861925513952707
AT2G41040_at 6.11707921229906 6.27355719519884 7.0923980746393 6.74883214558024 7.14747272520267 6.5606031322721 8.12044272740984 8.13148193714062 6.8154671327344 6.6901818757182 7.29349676084848 6.7580541609785 7.2223985737347 7.60306387563165 6.7715297104286 7.79924261085706 7.39782988363264 7.49479163444342 6.02406715061399 0.215194897465237 0.197703952542098 0.19985083914785 0.202306604145093 0.196481060308368 0.208258682461198 0.209963894760877 0.207410299540104 0.204805128574983 0.211271930381088 0.205850836027089 0.209700303960474 0.196481060308368 0.196481060308368 0.204940846564827 0.196481060308368 0.212932176832322 0.20294939325252 0.209434963451291 2 2|0 +|/ 17128896 17129699 17129365.667 17128454 17130282 + gene protein_coding_gene FALSE TRUE AT2G41040.1 methyltransferase-related similar to methyltransferase-related [Arabidopsis thaliana] (TAIR:AT1G78140.1); similar to SAM-dependent methyltransferases (ISS) [Ostreococcus tauri] (GB:CAL54388.1); similar to Os08g0411200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061786.1); similar to Os06g0646000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058196.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) 0.254665883187666 2.37221299582544 0.0436582683975343 1 2.9900505716766 13.9252115375553 0.254665883187666 0.120774388658135
AT4G31300_at 10.3773718683442 10.5482288009408 10.8459276336926 10.6881084217523 10.6207972961235 10.6784417789863 10.3952650304235 10.4613631623286 10.3288751103727 10.1590806774679 10.2441761080255 10.1182094016572 10.3555515478460 10.2357229623551 10.2884896317707 10.1931855702701 9.90917869231876 10.3607824880686 9.88818901400323 0.0805322741641074 0.0777986492886481 0.083125212072489 0.0842030665634232 0.0793246209086871 0.0812128807536849 0.0805674026070962 0.0783837947484555 0.0800857559202445 0.084884084677619 0.0820427240396854 0.081873569950503 0.0811504511384709 0.0812417660915298 0.081963013838174 0.0776361575901253 0.0974601024382607 0.0805933364872392 0.0856558322189974 4 4|0 +|/ 15189256 15190898 15190086.25 15188769 15191159 + gene protein_coding_gene FALSE TRUE AT4G31300.1|AT4G31300.2 PBA1 (20S proteasome beta subunit A 1); peptidase Encodes 20S proteasome subunit PBA1 (PBA1). Identical to Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) (PBA1) [Arabidopsis Thaliana] (GB:Q8LD27;GB:O23716); similar to PBB2 (20S proteasome beta subunit B 2), peptidase [Arabidopsis thaliana] (TAIR:AT5G40580.2); similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) (GB:P93395); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353)|Identical to Proteasome subunit beta type 6 precursor (EC 3.4.25.1) (Proteasome subunit beta type 1) (20S proteasome beta subunit A-1) (Proteasome component CD) (PBA1) [Arabidopsis Thaliana] (GB:Q8LD27;GB:O23716); similar to PBE1 (20S proteasome beta subunit E1), peptidase [Arabidopsis thaliana] (TAIR:AT1G13060.1); similar to Proteasome subunit beta type 6 precursor (Proteasome delta chain) (Tobacco cryptogein-induced protein 7) (tcI 7) (GB:P93395); contains InterPro domain Peptidase T1A, proteasome beta-subunit; (InterPro:IPR000243); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.175271008401892 2.37209385524726 0.0436665568873 1 2.98988002543478 20.7462098245258 0.175271008401892 0.0430175204124768
AT2G25190_at 7.1628693952114 7.33787274922173 7.56422577005948 7.60159544549888 7.6488720375278 7.35358096737143 7.55164940731591 7.02126480576592 7.04085798411987 6.78141523885064 7.42905098155118 7.17434212474222 6.80613269815872 7.39391934692598 6.68152063072953 7.203416380527 7.02639965515621 7.00428663122783 6.82624926006941 0.219776886831532 0.225619332469258 0.228572834287241 0.228119575660004 0.210734195336205 0.230365412069221 0.208134451794420 0.223483169099504 0.218393749051519 0.211152754530029 0.221947321436596 0.209078551460467 0.223359987091104 0.208567400382416 0.218334925634177 0.205762416554277 0.233030905475120 0.217838462377944 0.208289268789999 2 2|0 +|/ 10742071 10742464 10742292.7 10741025 10742778 + gene protein_coding_gene FALSE TRUE AT2G25190.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31980.1); similar to hypothetical protein 25.t00041 [Brassica oleracea] (GB:ABD64953.1); similar to Os03g0198500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049279.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) 0.240348597091510 2.36929890963174 0.0438614494310086 1 2.98587943352431 14.3916035141502 0.240348597091510 0.10952149765995
AT3G02420_at 6.99281097018192 7.8009699962418 6.86032966713996 7.46571606628154 7.52589274661586 7.05065741578729 6.90490569405622 6.74773189288875 5.36552470467182 4.45765094880119 4.7141545190057 5.55239747466303 5.43491069759903 5.84523858878594 5.0775152406165 5.32509997651551 5.66989105557921 5.38443169261029 4.50441559320727 0.260037515882976 0.251353595715080 0.276908743807602 0.256096971962598 0.253884491390358 0.258861886196441 0.248408411114945 0.260816131739027 0.268272228162515 0.248958970006143 0.256402233099749 0.252997558512596 0.250610385219788 0.253944601352588 0.258854699702670 0.254164965346489 0.2643139033173 0.258817108256591 0.254363273965122 3 3|0 -|/ 496201 497544 496973.75 495892 498841 - gene protein_coding_gene FALSE TRUE AT3G02420.1 similar to hypothetical protein [Cleome spinosa] (GB:ABD96906.1) 0.356817746196231 2.36861597580847 0.0439092024052765 1 2.98490199005743 12.2442861334318 0.356817746196231 0.195035441235421
AT1G09795_at 7.96086836633775 7.74657330068253 7.86290796125266 7.38294364505869 7.90022369061386 7.78819942272856 7.98425878615779 7.7257980507065 7.24075806652534 7.2761291340196 7.8170821566757 7.92060682508843 7.67637827688533 7.5245885788023 7.97778752243294 7.85623636125907 8.02367774454606 7.71666661261342 7.1671045670729 0.155564696135389 0.162791043901071 0.166428081144211 0.168907797019485 0.155127741536906 0.162459883060899 0.155843006993845 0.163769210858760 0.164505561026891 0.176323790702531 0.159292592452303 0.159542868504809 0.156132488063454 0.161134311516486 0.157804095711674 0.156192983571935 0.159023050428792 0.164677297035751 0.181059650878375 1 1|0 +|/ 3175386 3176663 3176071.375 3173536 3176912 + gene protein_coding_gene FALSE TRUE AT1G09795.1 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2); ATP phosphoribosyltransferase ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis similar to ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE) [Arabidopsis thaliana] (TAIR:AT1G58080.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum montanum] (GB:AAT74598.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum] (GB:AAT74590.1); similar to ATP phosphoribosyltransferase [Thlaspi goesingense] (GB:AAB88880.1); contains InterPro domain Histidine biosynthesis HisG: ATP phosphoribosyltransferase; (InterPro:IPR001348); contains InterPro domain Histidine biosynthesis HisG, C-terminal; (InterPro:IPR013115) 0.232662403928794 2.36838350278929 0.043925469508844 1 2.98456927262067 15.3150342857725 0.232662403928794 0.103202046294679
AT2G43280_at 4.70773627038089 5.08804475428262 5.00639281924738 4.95785396454688 5.41206166186304 5.8845022903374 5.0735918815993 5.01884845798039 4.10588700933498 4.64793808973686 5.17000844554123 4.35434767221471 4.59913127493466 4.65856422962124 4.30702861036211 5.09055763324782 4.5432172583156 3.69072590840602 4.51851707613174 0.205822802483923 0.205189250754307 0.203565696922607 0.202811911593622 0.204528456860998 0.21431052557943 0.207309238281424 0.206719407594238 0.206949301024020 0.204033022464848 0.206978713553648 0.209222210368435 0.207798963168506 0.209348073137842 0.204224185009119 0.203789230408784 0.205566986271719 0.212574959047120 0.206179586887709 2 2|0 +|/ 17997358 17997887 17997546.3 17996775 17998099 + gene protein_coding_gene FALSE TRUE AT2G43280.1 far-red impaired responsive family protein / FAR1 family protein similar to far-red impaired responsive family protein / FAR1 family protein [Arabidopsis thaliana] (TAIR:AT3G07500.1); similar to FAR1 [Medicago truncatula] (GB:ABD33394.1); contains InterPro domain FAR1; (InterPro:IPR004330) 0.235365456808555 2.36542329417449 0.0441331338883244 1 2.98033293875429 9.63153485627054 0.235365456808555 0.105717499707719
AT2G32800_at 8.428437417138 8.54735943828429 8.79936000680089 8.66274282978435 9.33112634141507 9.18982530113522 8.47677193928012 8.39740241298989 8.6547594124755 8.38860530011913 8.86768901128706 8.60981793876494 8.66086561980693 8.41864445896595 8.05572225703067 8.0771004810316 8.14671376274618 8.0868106172067 8.60781385825783 0.176432474977058 0.168430504391956 0.171844432514479 0.173100634211448 0.178188613997299 0.172354245796495 0.164988999027368 0.175748199316558 0.175869988148552 0.170691885338096 0.164789974284144 0.170919811995046 0.174736185467461 0.172208988690576 0.170172472310192 0.168893075415520 0.171625971003528 0.172529272698308 0.177078115737515 2 2 + 13925524 13925943 13925712.6 13923529 13926256 + gene protein_coding_gene FALSE TRUE AT2G32800.1 AP4.3A; ATP binding / protein kinase similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to putative receptor kinase Lecrk [Oryza sativa (japonica cultivar-group)] (GB:BAD10609.1); similar to putative receptor-type protein kinase LRK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD08845.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.174149239632497 2.36532623655984 0.0441399592190338 1 2.98019405109444 17.1870348985064 0.174149239632497 0.0420605456256502
AT1G78560_at 4.91157593293727 5.13773724752127 4.65475631774674 4.5466682469282 4.73334760640038 4.71221544092271 5.3153035200217 4.66740492443333 3.99740752710649 4.61032100887281 5.45896895999731 5.36399127818787 5.14444106590164 5.22942966766806 5.41230105572158 5.13007038835463 4.85419739497436 4.76564010652761 4.34401463192966 0.199748058155308 0.193767384951465 0.197272238420797 0.201120153245883 0.212457165948378 0.195585329391426 0.189818421981353 0.197267138883992 0.195816721211856 0.192350269314245 0.194106596082696 0.188436680348494 0.202523239734027 0.19201537175997 0.203088216178001 0.189731975695805 0.200046263414467 0.194160114091807 0.195542355359660 1 0|1 /|- 29551835 29552542 29552182.25 29551498 29553717 - gene protein_coding_gene FALSE TRUE AT1G78560.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT2G26900.1); similar to Os04g0381100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052601.1); similar to OSIGBa0092E09.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66374.1); similar to Na+-bile acid cotransporter (ISS) [Ostreococcus tauri] (GB:CAL53689.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657) 0.253186881900713 2.36430913127131 0.0442115479066363 1 2.97873863369017 9.57844001076542 0.253186881900713 0.120276244464611
AT3G48690_at 9.54799295168354 9.8549312438156 9.64998781148667 9.93585554579407 9.79901910720384 9.6227346586259 10.5477498801297 10.6518106471516 9.23999860331699 10.3677366047586 9.81027505831 9.6011965962024 10.0647829850224 10.0319784549680 9.38709149992358 10.0451256104393 10.3375049718119 9.90967261996284 10.1341342328922 0.0927314826359525 0.0944401153655428 0.097467704195311 0.0935839070113421 0.0961092352719946 0.100552772898093 0.100819281781600 0.0973843278909138 0.0993007198101142 0.0974869407736386 0.0925746611385166 0.0945957207176112 0.0940974604344022 0.0936263870971073 0.095998358218775 0.0919376508900666 0.0962083364901558 0.0947962660858625 0.0952785734242612 3 3 - 18048190 18048724 18048498.182 18048032 18049219 - gene protein_coding_gene FALSE TRUE AT3G48690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G48700.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABE83378.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) -0.207112452830016 -2.36255335514980 0.0443354002451715 1 2.97622640128123 19.8574652081877 -0.207112452830016 0.0807696982793724
AT1G60800_at 8.16599966530786 8.20892981427104 7.0617909134157 7.24333264573339 8.26341112950945 7.96032229473651 8.3432531054886 8.52583626470996 8.46011012142814 8.74987736474051 8.90431470144597 9.10626544986634 9.16986997008347 9.26287777890908 8.72856778777828 9.0725633356623 8.67960706209186 8.57301150931291 8.7388091605007 0.151340471043575 0.151802735144022 0.176439812464452 0.172015652089464 0.148256408143589 0.165715668896047 0.152569955228457 0.152019572852455 0.150624523641887 0.150062144338542 0.146876338683676 0.147087306823057 0.146876338683676 0.148307909141201 0.150935108208605 0.14737546594534 0.153716883282611 0.164515117668787 0.152905742059778 1 1 - 22387329 22388084 22387699.455 22387118 22391122 - gene protein_coding_gene FALSE TRUE AT1G60800.1 NIK3 (NSP-INTERACTING KINASE 3); kinase similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.1); similar to leucine-rich repeat receptor-like kinase [Ipomoea batatas] (GB:BAD18102.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.195627324712472 -2.36189458630134 0.044381958941343 1 2.97528386815208 16.764976269955 -0.195627324712472 0.0692218330891437
AT3G57870_at 11.7052953194683 11.8183634800528 11.9650946247356 11.9535769358995 11.9734942120067 11.6349312149745 11.8376331293433 11.8978867728263 11.6482329088346 11.6685998605125 12.0531292674515 11.8908960383169 11.9714762242917 11.8689873672477 11.9702740289891 11.9266662354591 11.7231586268063 11.8265894244627 11.4577829435657 0.082962893886991 0.082962893886991 0.082962893886991 0.0842563058553396 0.082962893886991 0.0875423202730416 0.083192514240038 0.082962893886991 0.091565712188654 0.082962893886991 0.0836095707736575 0.0832105824578265 0.082988329988594 0.082962893886991 0.082962893886991 0.082962893886991 0.0901673555530899 0.0886553564099624 0.082962893886991 3 3|0 -|/ 21439980 21441056 21440350.5 21439473 21441177 - gene protein_coding_gene FALSE TRUE AT3G57870.1 AHUS5 (EMBRYO DEFECTIVE 1637); ubiquitin-protein ligase Encodes a ubiquitin-conjugating enzyme. similar to ATUBC2 (UBIQUITING-CONJUGATING ENZYME 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G02760.1); similar to Os03g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048802.1); similar to SUMO E2 conjugating enzyme SCE1 [Nicotiana benthamiana] (GB:CAE45567.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.189669076069285 2.36182496380829 0.044386882379862 1 2.97518425769463 23.5960023224629 0.189669076069285 0.0626764885637627
AT3G57650_at 8.95313640854677 8.98694590684317 8.71658743949798 8.92315490991906 8.86199051470747 8.82809303254346 8.90326227932037 9.04863179750316 8.11506930237558 8.12754753733157 7.88296992526096 8.30970439756782 7.94372890498099 7.96562672305117 7.62972684504693 7.837373194373 7.64081209587243 8.14075349421348 8.14490623383501 0.138614807692812 0.135534421604556 0.143082490565673 0.141508853803970 0.135173688172783 0.136012372234133 0.14247407459389 0.136081455040452 0.140602595583917 0.145978324275129 0.134781303592850 0.135808595363342 0.147151922250814 0.137426742189732 0.152000811249139 0.134781303592850 0.145386494654726 0.137127699003059 0.137819578967253 3 3|0 +|/ 21362566 21363698 21363337.5 21360484 21364151 + gene protein_coding_gene FALSE TRUE AT3G57650.1 LPAT2 (Lysophosphatidyl acyltransferase 2); 1-acylglycerol-3-phosphate O-acyltransferase Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity. Identical to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 2) (LPAT2) [Arabidopsis Thaliana] (GB:Q8LG50;GB:Q9SVX9); similar to LPAT3 (Lysophosphatidyl acyltransferase 3), 1-acylglycerol-3-phosphate O-acyltransferase [Arabidopsis thaliana] (TAIR:AT1G51260.1); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (Lysophosphatidyl acyltransferase 2) (GB:Q6IWY1); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 2 (Lysophosphatidyl acyltransferase 2) (GB:Q9XFW4); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.175437517093957 -2.36111181430759 0.0444373449668123 1 2.97416395951916 16.9267309388068 -0.175437517093957 0.0444903778348586
AT3G13845_at 5.85077956534932 5.84616625028985 5.43005959886733 5.1848379004972 5.37167719567641 5.92735674198774 6.16526023145240 6.07803075285859 5.80958037015242 5.40339055049797 5.90572930919648 5.98301084230449 5.1321428737049 5.6935418198444 5.76062335036534 5.3358616826312 5.335990433316 5.29305632503172 5.34516302143091 0.22276226559881 0.218493791163222 0.221327337613726 0.220534823094159 0.221020526440580 0.239034135454652 0.218226075204459 0.217120539334897 0.216606157483698 0.218381195774521 0.212445258795345 0.216240780048695 0.223899778351700 0.226520621534133 0.228923336841277 0.215833943036425 0.229616876448026 0.232231305866650 0.218134916952390 3 3 - 4557547 4557721 4557634.909 4557332 4558586 - gene protein_coding_gene FALSE TRUE AT3G13845.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79767.1) -0.235479870937409 -2.36087310947066 0.0444542485348486 1 2.97382245458254 11.2689573097439 -0.235479870937409 0.106191805113666
AT3G01520_at 9.94988978887248 9.99167203673987 10.1153754663770 10.1416837679957 10.5411026615445 10.4580032900747 9.74483331923554 9.84828636806261 10.0944489419840 9.88565546676701 10.1232138736738 9.71847351637401 9.92531648377487 9.80800714853628 9.7004826189371 9.62341211785234 9.82411765199163 9.96317946300857 9.83043890887197 0.093644491522469 0.0933296148854917 0.0923010710182518 0.0916245451922823 0.0994096564736057 0.0922232137654038 0.096685436913059 0.0902229194461721 0.101161932806533 0.0907773677366931 0.0905671551029241 0.0900371140857967 0.0916733722079116 0.0945272082885802 0.0912574440331981 0.092298445842666 0.0926480787142062 0.0937777085563016 0.0911361125405844 3 3 + 208538 209901 209191.364 208446 210144 + gene protein_coding_gene FALSE TRUE AT3G01520.1 universal stress protein (USP) family protein Identical to Universal stress protein A-like protein [Arabidopsis Thaliana] (GB:Q8LGG8;GB:Q940U0;GB:Q9SSA2); similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G14680.1); similar to Os02g0707900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047879.1); similar to putative ethylene response protein [Capsicum chinense] (GB:CAJ13711.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.164649252498955 2.36077904108232 0.0444609116240211 1 2.97368787607662 19.9851674032676 0.164649252498955 0.0245017059856633
AT4G25390_at 4.84082291159114 5.56499416222544 5.79824449932701 6.13084953644813 5.606151894316 6.00829800518987 4.50543368022806 5.0215805621513 4.64297268225699 4.18181631098185 4.27789776307786 4.02498828401777 4.25403159801802 4.45969748693005 3.58588076169877 4.58347278379494 4.19190678465935 3.86700967666293 4.36090396577227 0.241365061672396 0.253050972398755 0.240692395382426 0.251914533306082 0.24908445721376 0.239669837390143 0.258371546088069 0.238431309525957 0.245501759118226 0.23850616285909 0.244004100126977 0.241486395717414 0.241316370891953 0.244910026221086 0.237799118770244 0.237208187783414 0.256603297845829 0.245526369389769 0.246483297512102 4 4 + 12978880 12979412 12979152.091 12977351 12979578 + gene protein_coding_gene FALSE TRUE AT4G25390.1|AT4G25390.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51770.1); similar to Os03g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049573.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94994.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.331528905395849 2.35955998192744 0.0445473505943465 1 2.97194389455244 9.70996772078186 0.331528905395849 0.178437670793096
AT2G42220_at 11.2807720780565 11.4057169187256 10.6708871917944 10.6049952256665 11.104854894184 10.9398650797040 11.5865408933154 11.5734805906685 12.0816712301313 11.9365107430569 12.6138448921415 12.7326832407368 12.0482611907939 12.3960272642032 12.5109693032766 12.3038968429993 11.4842208979430 12.0949396614063 11.9324450597455 0.0859662580136346 0.0822936077792529 0.0891087085333002 0.0831784565292059 0.0856419633998817 0.0915174752905907 0.0877378365578125 0.0856806667713192 0.0921597653368306 0.0862836387776125 0.083871241156369 0.0839801922860612 0.0844637680866627 0.0866337539502558 0.0836698203587679 0.0822936077792529 0.0873781422825339 0.0964710244664435 0.0845546053835345 2 2|0 +|/ 17599409 17600351 17599905.375 17599116 17600578 + gene protein_coding_gene FALSE TRUE AT2G42220.1 rhodanese-like domain-containing protein similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08920.1); similar to Os09g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062759.1); similar to Os03g0289400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049793.1); similar to Os02g0596000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047318.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.170956977488983 -2.35864031508746 0.0446126715857917 1 2.97062829631566 23.2742129870138 -0.170956977488983 0.0376548715228362
AT1G22890_at 9.64232074242573 9.4707770358409 9.06289024755987 9.31578819006875 10.1328039625447 9.4885922297596 7.0834925612191 6.5614040476396 10.4222231007041 9.35191918234306 9.8499601627709 9.82960560197365 8.4202849769333 9.45508663929703 9.25072633806008 8.40179591660135 8.0356131484599 8.74499171551446 9.37969879459133 0.150764717240282 0.147241460104533 0.152584624739824 0.149388445061668 0.156090194269313 0.155474004115171 0.156034804539981 0.176631381749921 0.155858568604178 0.153068704715653 0.151873250208816 0.146541809035432 0.157038293938072 0.148549944206453 0.146041473109067 0.151542843862598 0.157370937372896 0.16269364434085 0.147339363567489 1 1|0 +|/ 8102895 8103193 8103023.111 8102807 8103521 + gene protein_coding_gene FALSE TRUE AT1G22890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44568.1); contains domain FAMILY NOT NAMED (PTHR12953); contains domain SUBFAMILY NOT NAMED (PTHR12953:SF10) 0.295540548636873 2.35742398998682 0.044699209891797 1 2.96888842152276 18.2029861712977 0.295540548636873 0.152932723928739
AT1G15170_at 4.52123439316685 5.46480445115506 5.583359406853 5.62314749515558 6.17573260829119 5.49906071849733 5.52974704758671 5.15963710064042 4.52130616028825 4.79583347664464 4.59122429823068 4.49864352404233 4.81252508851615 4.76292382289846 4.44548027265961 5.20400217957767 5.28625280432405 4.54110804410227 4.36982695895125 0.29611583602255 0.294122058842131 0.297787623546379 0.30090530437833 0.304059205746212 0.301726332328196 0.292323608424412 0.294364987396618 0.303782290781886 0.292323608424412 0.292323608424412 0.293821325930547 0.292983889849401 0.292841904323562 0.292323608424412 0.292323608424412 0.298402798644536 0.292323608424412 0.298283404635222 1 0|1 /|+ 5221832 5222204 5222064.5 5220636 5222968 + gene protein_coding_gene FALSE TRUE AT1G15170.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15180.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15150.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); similar to Os01g0504500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043143.1); similar to Os01g0684900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043893.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.378458557363937 2.35696081332796 0.0447322076432403 1 2.96822590652385 10.1096365041292 0.378458557363937 0.211011319206883
AT3G01490_at 7.30608750440182 7.17489986885394 6.20428970673007 6.0880779005885 8.25919683606472 7.94717001405506 6.66699843577998 5.98952169502317 6.83044900468011 6.9082380339156 7.59632241037948 7.5478413799943 8.15288189502382 7.57942192108157 7.44962696026785 7.58167835825882 6.7706760457543 7.45047087665888 8.22245611443754 0.171511358962098 0.174201350039238 0.180549475563774 0.176403027851643 0.178541404677182 0.185816637540359 0.175684455656520 0.176152435507271 0.182478650261613 0.174523909811113 0.172974989526057 0.178766216864161 0.17718685902847 0.180532681883996 0.176973761390582 0.171511358962098 0.186763798504109 0.171511358962098 0.172888584009829 3 3|0 -|/ 191119 191862 191472.444 190879 193544 - gene protein_coding_gene FALSE TRUE AT3G01490.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G50000.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06450.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.268020334130578 2.35514578355879 0.0448617485464307 1 2.96562989554942 14.3727782611564 0.268020334130578 0.13259317471361
AT2G39140_at 4.67540268195098 5.10874551130004 4.82554803037795 4.47609100778955 5.1592184794786 5.15321159709757 4.91217561673049 4.82902557711094 4.74293331912031 4.87613312364626 3.98637927557082 4.17004140208869 4.48091724944871 4.18265244253157 4.80530554131848 4.51771122483763 4.67643602956317 4.44440106083307 5.01915021799612 0.156569292822182 0.160623054805916 0.156853961693495 0.153088109909598 0.15980274276472 0.163781778136378 0.160751642401539 0.156308319738931 0.157233546486497 0.156250782099675 0.155210129574444 0.153981116859118 0.153720601653462 0.156287728291957 0.155127617770424 0.151772450786294 0.160205841687111 0.151943918538507 0.155599992097394 2 2|0 +|/ 16337708 16340204 16339025.312 16337261 16340438 + gene protein_coding_gene FALSE TRUE AT2G39140.1 pseudouridine synthase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G43340.1); similar to pseudouridine synthase family protein (ISS) [Ostreococcus tauri] (GB:CAL53753.1); similar to Os03g0152700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048994.1); contains InterPro domain Pseudouridine synthase; (InterPro:IPR006145); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Pseudouridine synthase, Rsu; (InterPro:IPR000748) -0.224622546700371 -2.35502913771312 0.0448700864743918 1 2.96546306726178 9.5361203536603 -0.224622546700371 0.0974124426068183
AT1G19730_at 6.89606483135016 7.165201809048 7.11495662298165 7.28748476307635 7.73340426270554 7.20390464451816 7.44576732408678 7.12175716250236 6.12153786345136 6.65005515727078 6.77727282894278 6.65338183011272 6.95908015169407 7.06506941935341 6.55499423401623 7.11839716698241 7.03547031327535 6.24103806626236 6.64607912036723 0.175533961045602 0.172754103851816 0.174393191348676 0.174717166362781 0.173618400241734 0.172627630404366 0.174544663772292 0.177810617119508 0.183556024250273 0.180004757231983 0.166499213061699 0.169163278079466 0.171060606761583 0.169916550197522 0.182546233583125 0.168422996875607 0.176178859627936 0.176558038810155 0.170402383871864 1 1 - 6823155 6823964 6823457.636 6822913 6824062 - gene protein_coding_gene FALSE TRUE AT1G19730.1 ATTRX4 (thioredoxin H-type 4); thiol-disulfide exchange intermediate encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells. Identical to Thioredoxin H-type 4 (TRX-H-4) (TRX4) [Arabidopsis Thaliana] (GB:Q39239;GB:Q38880;GB:Q9FXH2); similar to ATTRX5 (thioredoxin H-type 5), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G45145.1); similar to thioredoxin h (GB:AAC49355.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) 0.252885206270197 2.35490859278375 0.0448787047338291 1 2.96529066355067 13.8826403683801 0.252885206270197 0.120835423945275
AT1G19130_at 7.94288426262329 8.18081110132004 8.19524653820011 8.12894401940963 8.70533596801637 7.99959163411586 7.55420840803531 7.30386348264059 7.94082044846679 7.85314230608901 8.25067934624396 7.99690411993173 7.81246354629 8.01899833609564 8.06764149338367 7.8786892802982 7.37183012092855 7.94225369698913 7.85549529044459 0.141787698889427 0.137529216234445 0.144594178454076 0.141224698668337 0.147116504071356 0.149551487220319 0.139701039360933 0.143173819820726 0.147711721937496 0.144815414181599 0.138229136956813 0.135316340667189 0.148637474626277 0.141619276065180 0.146003746554572 0.139049638914278 0.175646869686566 0.141185268910355 0.140334275229335 1 1 - 6609495 6610026 6609677.818 6609360 6610604 - gene protein_coding_gene FALSE TRUE AT1G19130.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36638.1); similar to Os08g0455800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061963.1); contains InterPro domain Protein of unknown function DUF985; (InterPro:IPR009327) 0.273058768567000 2.35484542740905 0.0448832213482123 1 2.96520032469044 15.9016532638886 0.273058768567000 0.136455863088471
AT1G64810_at 8.4392139700643 8.5537219510909 8.34013283409943 8.90606092827039 8.66559532153157 8.2438206372906 8.65903301201218 8.69571058014116 8.09384770310218 7.77952340749139 7.29569953702242 6.82094072526246 7.51183238879889 7.33360891074722 6.28654639788883 7.8091490252408 7.62500747182128 7.42122030696876 7.31206232051879 0.234505910899345 0.233833820405385 0.230213086539933 0.235573399672261 0.239401634754606 0.240754869668838 0.247499060653458 0.239381481470808 0.236497523125046 0.233688198034541 0.240289093159671 0.242664086647450 0.231784195307232 0.240345714233806 0.240972733671301 0.230160979498336 0.252861854875437 0.234087662961714 0.238801714552754 1 1 + 24091340 24091910 24091692.727 24090221 24092201 + gene protein_coding_gene FALSE TRUE AT1G64810.1|AT1G64810.2 APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1) chloroplast APO1 Identical to APO protein 1, chloroplast precursor (Accumulation of photosystem I protein 1) (Protein ACCUMULATION OF PHOTOSYSTEM ONE1) (APO1) [Arabidopsis Thaliana] (GB:Q9XIR4); similar to APO2 (ACCUMULATION OF PHOTOSYSTEM ONE 2) [Arabidopsis thaliana] (TAIR:AT5G57930.2); similar to H0525G02.2 [Oryza sativa (indica cultivar-group)] (GB:CAJ86305.1); similar to OSJNBa0008M17.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE04336.2); contains InterPro domain Protein of unknown function DUF794, plant; (InterPro:IPR008512) -0.256747331465542 -2.35464440073328 0.0448975986930190 1 2.96491281919377 16.0586503572324 -0.256747331465542 0.123903491281328
AT3G13490_at 7.30060819963589 6.84671995318587 6.90505590092547 6.67789281680004 6.77061814529284 6.93141069730708 7.36694287164736 7.09138879716151 6.54605092987754 6.51646291726096 6.32104380638439 6.47126239856387 6.06558566712499 6.3897433878399 6.97267698662824 6.45775375557268 6.4533291590939 6.23671216568185 6.59979746425769 0.195069762453954 0.189030366309274 0.190065858245896 0.195692838351252 0.189499417871096 0.196030781518828 0.198148427547302 0.191655925765416 0.19704720616532 0.193037225046274 0.193946612108135 0.193970512863424 0.1936639885265 0.189561877236299 0.199158504000866 0.190994732061535 0.193171173132082 0.187756486764685 0.187756486764685 3 3|0 -|/ 4396009 4397027 4396651.222 4395732 4399332 - gene protein_coding_gene FALSE TRUE AT3G13490.1 OVA5 (OVULE ABORTION 5); ATP binding / aminoacyl-tRNA ligase similar to lysyl-tRNA synthetase, putative / lysine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT3G11710.1); similar to lysyl-tRNA synthetase [Synechocystis sp. PCC 6803] (GB:NP_440803.1); similar to Os02g0623500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047472.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364); contains InterPro domain Lysyl-tRNA synthetase, class-2; (InterPro:IPR002313) -0.231630459965234 -2.35135074824062 0.0451338137912288 1 2.96020272666898 13.4738882659078 -0.231630459965234 0.103746509074608
AT4G25910_at 8.38187949791025 8.50600266438413 8.22744451324052 8.18563797055863 8.80472001713158 8.71140498111478 8.80688022638741 8.77916218356721 8.87977312050206 9.04521971913236 8.80307620634804 8.88452662138565 8.88169640466271 8.89758869855477 8.4442240276327 9.0006313170008 8.82615252790886 8.780122949855 9.10411328251597 0.116847443136662 0.116033621255365 0.12042272916716 0.115207678445888 0.121667985054034 0.112149688618815 0.126953044176974 0.115250259761465 0.114544859028324 0.114099253603704 0.119127706293302 0.119632918447682 0.112149688618815 0.112149688618815 0.120995598844775 0.114570107112603 0.117291910986228 0.120926375816654 0.114959215919971 4 4 + 13164336 13165077 13164735.091 13163938 13165214 + gene protein_coding_gene FALSE TRUE AT4G25910.1 NFU3 (NFU domain protein 3) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU1 and 2 than to NFU4 and 5. Targeted to the chloroplast. Identical to NifU-like protein 3, chloroplast precursor (AtCNfu3) (AtCnfU-IVa) (NIFU3) [Arabidopsis Thaliana] (GB:Q84RQ7;GB:Q0WN92;GB:Q8LCL7;GB:Q9SZG6); similar to NFU2 (NFU domain protein 2) [Arabidopsis thaliana] (TAIR:AT5G49940.1); similar to Os06g0694500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058443.1); similar to Os11g0181500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065900.1); similar to Similar to seven transmembrane protein Mlo4 [Oryza sativa (japonica cultivar-group)] (GB:AAX96187.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) -0.165564484549551 -2.35131303604978 0.0451365256004413 1 2.96014880114882 17.4626186992295 -0.165564484549551 0.0282404497628279
AT4G17880_at 5.32090206079475 6.15033597121214 6.21227184853542 6.46929543022092 6.7528087118066 6.20829901949535 7.79153707817974 7.51404436536014 6.37770443792143 6.98174094370094 6.47548621771057 6.77360681636704 6.09178160419457 6.86510119345322 5.84351584315202 6.66714005330163 6.46450990476372 6.66894071830667 7.26126434476412 0.248714555380766 0.224862884414959 0.231353867506756 0.223141891719731 0.223417823305443 0.240820849249877 0.221685570120146 0.225884070890779 0.231673982797160 0.233388635407081 0.223816069274266 0.227368930166071 0.225936739660407 0.231725909242048 0.2378378283134 0.224543445202766 0.233044474642542 0.231040975019781 0.23280765179934 4 4 - 9933735 9934229 9933955.182 9933379 9935599 - gene protein_coding_gene FALSE TRUE AT4G17880.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT5G46760.1); similar to basic helix-loop-helix (bHLH) family transcription factor [Brassica oleracea] (GB:ABD65632.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.337922865630717 -2.35105049712907 0.045155408753915 1 2.95977339382960 13.2298519120515 -0.337922865630717 0.183757224601372
AT2G07360_at 6.68936447000495 7.11466543766454 7.00522534445548 7.26812518843991 7.59555913070592 7.14114450294864 7.04621250773017 7.13621402598392 6.2921810730217 6.40504363548582 6.55510902027739 6.48641695925651 6.48850974805177 6.56293840315095 6.35599578161095 6.72518893278712 6.37709749078559 6.74573172023912 6.18915091550462 0.169735782137808 0.168320463908569 0.170390771536901 0.170362757652502 0.167939324482073 0.177708438303823 0.172968511343302 0.169479436336696 0.179728808582358 0.171278434121572 0.169117144486092 0.169622746181619 0.165632267070472 0.169774397984073 0.169186489006157 0.166319030824339 0.167681117884611 0.169387194478101 0.172912832686288 2 2|0 -|/ 3047625 3052453 3050363.765 3047303 3057180 - gene protein_coding_gene FALSE TRUE AT2G07360.1 SH3 domain-containing protein similar to SH3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95139.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06840.1); similar to SH3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95138.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Src homology-3; (InterPro:IPR001452) 0.248782198487071 2.35031528049993 0.0452083312049261 1 2.95872212791947 13.5408548501703 0.248782198487071 0.117955532483273
AT4G31180_at 9.89088550604118 10.0869588989523 9.95713977590682 10.0910370888264 10.1443959762498 9.88433297149286 9.56671079500292 9.37693778080929 9.69963632194582 9.27571557107492 9.76751093491852 9.40912428529284 9.41436016139456 9.69056297837174 9.45145581910005 9.63616008307771 9.47900211165726 9.63559399566417 9.40461639088851 0.101798848512958 0.0952792546372478 0.101839526737825 0.0991206757346976 0.0960089759868237 0.097193260089271 0.0929501667791746 0.0980720273085424 0.0969605711112068 0.108276940456635 0.0929551643369543 0.0929501667791746 0.0977749486092834 0.0947894308513584 0.0994942181273072 0.0929501667791746 0.094059878500682 0.0989349318587396 0.0964788186168703 4 4 + 15158645 15159314 15158980.909 15155885 15159595 + gene protein_coding_gene FALSE TRUE AT4G31180.1|AT4G31180.2 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative similar to aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G26870.1); similar to Os02g0686400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047770.1); similar to Aspartyl-tRNA synthetase, class IIb; tRNA synthetase, class II (D, K and N) [Medicago truncatula] (GB:ABE93908.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Aspartyl-tRNA synthetase, class IIb; (InterPro:IPR002312); contains InterPro domain Aspartyl-tRNA synthetase archea/euk type; (InterPro:IPR004523); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365); contains InterPro domain tRNA synthetase, class II (D, K and N); (InterPro:IPR004364) 0.194667538066202 2.35025785110490 0.0452124676946054 1 2.95864001298895 19.3850302112374 0.194667538066202 0.0692261548052497
AT1G28240_at 7.54243242198408 7.3294264428449 7.22197404309799 7.39416978398928 7.63438763013625 7.20760171157114 7.17494658132343 7.42667299376078 7.33415878035604 7.74738706043854 8.48332891616574 7.94397079368678 8.09083894496868 8.11741783271975 8.08790485496172 8.07362537619708 7.96494815514228 7.64076778319178 7.70975058309791 0.181767863700174 0.1796917174401 0.185451036783266 0.179260464033316 0.195033918568639 0.192384490965971 0.185379458873993 0.187896399476939 0.207187301498074 0.187595093299373 0.184550451667654 0.177796603686808 0.186118581415649 0.189105036975401 0.187337191834731 0.185332250153684 0.185058950744881 0.190913667439466 0.18366839433983 1 1|0 -|/ 9868533 9869185 9868772.222 9868303 9872198 - gene protein_coding_gene FALSE TRUE AT1G28240.1 similar to hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Arabidopsis thaliana] (TAIR:AT1G53040.2); similar to Os01g0304300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042838.1); similar to Os05g0531500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056134.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT47075.1); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) 0.224707603192714 2.34915586750898 0.0452919137489135 1 2.95706440100968 15.1901760211352 0.224707603192714 0.0979763505736297
AT4G38740_at 11.9175397855116 12.0152001977667 12.3904869588227 12.4897803136002 12.2230185283154 12.2901665715372 12.7702951234606 12.8711623600491 12.1520992570873 12.4735223333450 12.6767785269579 12.4911519028497 12.6820631878863 12.4139461841582 12.1616015986992 12.7107844199020 12.9935009939797 12.6071566885710 12.0123488586256 0.0617530726466994 0.061240835852579 0.0651441557595032 0.0631895187493024 0.0630257364367737 0.0656828141364222 0.0633257054670148 0.0615170374468948 0.0687378212759886 0.0619834045200239 0.0620085397416909 0.0622979084087768 0.0624942096478424 0.067349819214892 0.0649237115334117 0.061240835852579 0.0636174761073318 0.0614771420916412 0.0624905004404707 4 4 - 18083620 18084107 18083885.545 18083389 18084245 - gene protein_coding_gene FALSE TRUE AT4G38740.1 ROC1 (rotamase CyP 1); peptidyl-prolyl cis-trans isomerase Encodes cytosolic cyclophilin ROC1. Identical to Peptidyl-prolyl cis-trans isomerase CYP18-3 (EC 5.2.1.8) (PPIase CYP18-3) (Rotamase cyclophilin-1) (Cyclophilin of 18 kDa 3) (Cyclosporin A-binding protein) (CYP18-3) [Arabidopsis Thaliana] (GB:P34790); similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to cyclophilin [Cucumis sativus] (GB:AAX94775.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.167139923947371 2.34865610724306 0.0453279891105915 1 2.95634987698169 24.773346106997 0.167139923947371 0.0319471215867565
AT1G73720_at 6.42198842447654 7.35407382296125 6.34653893357561 6.74361061002146 6.9885334744814 6.82413566254266 6.73522199198795 7.24509767567846 6.75402036621845 6.98969277067714 6.2662327498543 6.59364300920758 6.15332452803348 6.24265696226092 6.19777335956535 6.34950918060223 6.59265045641797 6.29150298661796 6.77494771848241 0.235158842994156 0.230946868745096 0.228253658491359 0.227764020616159 0.245256749631533 0.233764462078095 0.234957078134104 0.227764020616159 0.240238249697621 0.227764020616159 0.230684057517117 0.231476669151751 0.233053563938338 0.235356547190283 0.229984644361977 0.227764020616159 0.233004770636140 0.232686075833554 0.232292476689073 1 1|0 +|/ 27731873 27733330 27732609.333 27728663 27733592 + gene protein_coding_gene FALSE TRUE AT1G73720.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to WD-40 repeat protein [Lycopersicon esculentum] (GB:AAK52092.1); similar to Smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans) [Homo sapiens] (GB:AAI10655.1); similar to PREDICTED: similar to smu-1 suppressor of mec-8 and unc-52 homolog isoform 1 [Canis familiaris] (GB:XP_531971.2); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) -0.358516386505062 -2.34816873370674 0.0453631978897151 1 2.95565308154791 13.4201327107303 -0.358516386505062 0.198330683432510
AT2G34770_at 7.446409286379 7.9128457413856 6.65209351815924 6.98704992544138 8.15669684816413 7.53133093130227 8.0969517997315 8.28377210681524 8.9606576433211 7.7481084292926 9.48997791334627 8.42721247194937 8.3907156585671 8.85865671192247 8.12230021118208 7.73676047002228 6.54876605849844 8.38097355441171 7.96064188652532 0.192384631604635 0.188510566785467 0.232840702198052 0.199779637568983 0.188605453059250 0.206985571304934 0.187437753510218 0.190904879225783 0.200113137112465 0.195518410474384 0.192432757255229 0.189770642649101 0.189644657742328 0.190807937619605 0.193775215375045 0.188580773247470 0.224585579231400 0.191468641783068 0.194662602384766 2 2|0 +|/ 14674283 14675094 14674644.2 14672746 14675329 + gene protein_coding_gene FALSE TRUE AT2G34770.1 FAH1 (FATTY ACID HYDROXYLASE 1); catalytic fatty acid hydroxylase Fah1p (FAH1) homologous to S. cerevisiae FAH1, involved in the hydroxylation of fatty acids. similar to fatty acid hydroxylase, putative [Arabidopsis thaliana] (TAIR:AT4G20870.1); similar to Fatty acid hydroxylase, putative [Medicago truncatula] (GB:ABE90051.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Fatty acid hydroxylase; (InterPro:IPR006694) -0.290958766476643 -2.34790664564025 0.0453821428818847 1 2.95527838330727 15.8671719534809 -0.290958766476643 0.150442453890989
AT1G58080_at 8.03731616372015 7.86415121743371 7.5254558243207 7.75471774430144 7.69347598408212 7.7532952439639 8.56133669494742 8.8258210641299 8.55564892725502 8.97615106674431 9.32770395809767 9.24176333274767 8.98949451352493 9.20856940685172 9.21700022350239 9.1977046758852 8.888100151485 8.36211155814906 8.87086923053057 0.131434453653071 0.131718901692041 0.143274452563445 0.134501361857386 0.138419456940382 0.144942129302534 0.13534492197757 0.141985411725979 0.148932424951175 0.134564532108540 0.134488717663728 0.142907549962932 0.130192830483708 0.139371130122450 0.141133016961227 0.133832066625789 0.142789203951376 0.146643167976994 0.131237556916722 1 0|1 /|- 21508244 21508730 21508520.429 21507979 21511205 - gene protein_coding_gene FALSE TRUE AT1G58080.1 ATATP-PRT1 (ATP PHOSPHORIBOSYL TRANSFERASE) ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis similar to ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2), ATP phosphoribosyltransferase [Arabidopsis thaliana] (TAIR:AT1G09795.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum montanum] (GB:AAT74597.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum] (GB:AAT74589.1); similar to chloroplast ATP phosphoribosyl transferase [Alyssum lesbiacum] (GB:AAT74590.1); contains InterPro domain Histidine biosynthesis HisG: ATP phosphoribosyltransferase; (InterPro:IPR001348); contains InterPro domain Histidine biosynthesis HisG, C-terminal; (InterPro:IPR013115) -0.19362692493513 -2.34733318725236 0.0454236227069335 1 2.95445854855077 16.9294191016326 -0.19362692493513 0.0683680811867063
AT2G26690_at 9.2313053412109 9.731384854714 10.1691424769236 10.1481386328345 10.2098916310779 9.90185911652916 11.4829312206673 11.3219800468788 9.89551337051144 10.3660926916872 11.2545833124392 10.8500763768861 10.9207940936252 10.9010510605089 10.6547046817656 11.0086876363048 11.0494476064128 11.2407392175524 10.2902664609801 0.108348003368080 0.103327536402745 0.104505601425730 0.107399465043334 0.103409028703461 0.108696859012585 0.102520734978885 0.104274961888356 0.117809479456365 0.105837594516181 0.109680789893966 0.104803000240147 0.105279755983397 0.103873397635723 0.103494899481459 0.104568229089003 0.107556406086112 0.109148608532055 0.105590429439512 2 2|0 -|/ 11354555 11355069 11354755 11354225 11358071 - gene protein_coding_gene FALSE TRUE AT2G26690.1 nitrate transporter (NTP2) similar to NRT1.1 (nitrate transporter 1.1), transporter [Arabidopsis thaliana] (TAIR:AT1G12110.1); similar to putative dicarboxylate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD87491.1); similar to dicarboxylate transporter [Alnus glutinosa] (GB:CAD32549.1); similar to Os01g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043326.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.233205294467088 2.3468895748051 0.0454557363110956 1 2.95382436356196 20.8590631680611 0.233205294467088 0.105451224210950
AT1G48300_at 11.6928826926075 11.8107672913184 11.6582137027109 11.6393664496556 12.5058035889917 12.3162068464691 12.1632027079384 12.1408428127943 12.3255879766441 12.7431071551168 12.1834509654547 12.1256810377785 12.4019153607263 12.3050903287419 11.8282072872020 12.2978735641254 12.1648315984670 11.9453794976917 12.6597213760010 0.0807739393023244 0.078277743774865 0.0828126397383904 0.0858011640196674 0.079402756778639 0.0815004306458371 0.0794824989727575 0.0788196258432818 0.0801432512321437 0.0784278855781549 0.080598929518659 0.0781347750151723 0.0781528059148034 0.079340313602685 0.0807518395325125 0.0775352540142352 0.0823290011710131 0.0812945249614649 0.0786846228856521 1 1 + 17851411 17851980 17851687.909 17851024 17852232 + gene protein_coding_gene FALSE TRUE AT1G48300.1 similar to soluble diacylglycerol acyltransferase [Arachis hypogaea] (GB:AAX62735.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.170805680052516 -2.34589786110565 0.0455276093549443 1 2.95240667345527 24.3572570320328 -0.170805680052516 0.0389657035143214
AT3G59760_at 8.33421719897733 8.50890237924749 7.98035944451186 7.9778167854052 7.6108963681817 7.64191885395064 8.08214449822828 8.31493331880573 6.62425974386713 7.59900868075447 8.15786087446216 8.43715869020727 7.79102434309221 8.1029559263332 8.42420766423954 7.9758090874184 7.80071733049025 8.18834189238366 7.51232749706527 0.13929501232692 0.139631402116957 0.137413152880433 0.142487786774231 0.137413152880433 0.139989285577263 0.138977569619683 0.139841321346932 0.15440996530665 0.141803856458226 0.140930740109297 0.137463792451779 0.144844168410927 0.143841565138571 0.144582011496648 0.139045096342807 0.142538557529119 0.144153179982333 0.151089969945419 3 3 - 22083672 22085158 22084411 22082925 22086393 - gene protein_coding_gene FALSE TRUE AT3G59760.1|AT3G59760.2|AT3G59760.3 OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C); cysteine synthase Arabidopsis thaliana O-acetylserine (thiol) lyase (OAS-TL) isoform oasC Identical to Cysteine synthase, mitochondrial precursor (EC 2.5.1.47) (O- acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase C) (CS-C) (OAS-TL C) (AtCS-C) (OASC) [Arabidopsis Thaliana] (GB:Q43725;GB:Q8L4A2;GB:Q9M1Z8;GB:Q9M440); similar to OASB (CYSTEINE SYNTHASE 1), cysteine synthase [Arabidopsis thaliana] (TAIR:AT2G43750.1); similar to plastidic cysteine synthase 1 [Solanum tuberosum] (GB:BAB20862.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) 0.178629674856844 2.34548685300326 0.0455574297352869 1 2.95181914556129 15.7338776642338 0.178629674856844 0.05065343028088
AT1G67140_at 6.25733276308735 6.62204422480228 6.11384408424832 6.28131461913165 6.69238576206287 6.29743535578113 6.4408284600135 6.31333984703843 6.33867125762882 6.87998985709296 6.67399280547747 6.55095110462793 5.95190012852698 6.53668761064676 6.2822245513634 6.56102846261789 5.40443227375977 5.98160007650824 6.68278742753742 0.189817840745555 0.188831540311975 0.197905288907732 0.191913454327219 0.186770602533078 0.207041665065239 0.187582257900957 0.186782653360691 0.197702824702624 0.190507051202430 0.190158945396112 0.186115865595597 0.189967157046284 0.188381477480890 0.187256429941614 0.190254552461271 0.209864428582103 0.190902264591496 0.190768912437392 1 1 - 25104756 25105252 25105015.545 25104571 25121035 - gene protein_coding_gene FALSE TRUE AT1G67140.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Os06g0505100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057715.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45654.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.226552711245708 -2.3452287519008 0.0455761660030459 1 2.95145020203677 12.8156497932428 -0.226552711245708 0.099908160986035
AT3G47490_at 7.95766396574817 8.10079080441117 8.04900523024886 8.26200052128025 8.30217473928877 8.01433042157027 8.64501234876919 8.78431210163969 7.98359576267096 8.43635252184414 7.85768960321022 8.13746918456267 8.10430340010254 7.84912343884966 7.9403427960021 8.13119637833393 7.75439280377199 7.85322096398297 7.97020083555977 0.145011564561203 0.134468105458317 0.15200460906819 0.140552084417978 0.136421128958285 0.139959707134227 0.137284710229922 0.143045311747204 0.143580040464648 0.138708270787166 0.133224515526025 0.133375319870864 0.137422470543906 0.140916028055247 0.136406052023537 0.132790968721558 0.143317782064278 0.146136283365236 0.140082786829175 3 3|0 +|/ 17509448 17511682 17510477.333 17509322 17511901 + gene protein_coding_gene FALSE TRUE AT3G47490.1|AT3G47490.2 HNH endonuclease domain-containing protein similar to HNH endonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18680.1); similar to HNH endonuclease family protein [Tetrahymena thermophila SB210] (GB:XP_001023127.1); similar to Os03g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049103.1); similar to Os10g0335200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064372.1); contains InterPro domain HNH endonuclease; (InterPro:IPR002711); contains InterPro domain HNH nuclease; (InterPro:IPR003615)|similar to HNH endonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G18680.1); similar to HNH endonuclease family protein [Tetrahymena thermophila SB210] (GB:XP_001023127.1); similar to Os03g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049103.1); similar to Os10g0335200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064372.1) -0.195824731317312 -2.34459223697815 0.0456224051607779 1 2.95054035620888 16.3061697805164 -0.195824731317312 0.0709547459012167
AT4G22750_at 9.76251199000768 9.90369429801272 9.96176502028367 9.91605763683652 10.2176352449825 10.0998841737597 9.57149332723641 9.53743143806245 9.40629838910067 9.52428854782626 9.8223699089413 9.30373401729407 9.41621820365367 9.37005891645205 9.6432794443088 9.34259382496283 9.46997706377655 9.36230958066293 9.52843354191083 0.107335264121251 0.104152096706992 0.103955130103446 0.103813371283189 0.111557924907714 0.105729280565832 0.107467339163915 0.107427521817202 0.116335907604453 0.109351916100262 0.104435755118273 0.105712094614841 0.119101989006854 0.104395396438913 0.105203488102576 0.103813371283189 0.111282235898795 0.106972696800840 0.111956301158937 4 4|0 -|/ 11949379 11950477 11949996.111 11949191 11951435 - gene protein_coding_gene FALSE TRUE AT4G22750.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT3G60800.1); similar to DHHC zinc finger domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99421.1); similar to Os03g0804300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051618.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.167515108014856 2.34415392367550 0.045654273255365 1 2.94991384210336 19.3476380309573 0.167515108014856 0.0333089258843115
AT4G11120_at 5.0287799186962 5.53401076376988 4.94803275370731 5.12472186532617 5.41890133826362 4.24214158621902 5.86678532337467 5.43920491474152 4.20703414256521 4.53024955377177 3.79360197220708 3.9921639089354 4.18668579615336 4.05870081923396 4.47201872476511 3.96876173509525 3.70454206036240 3.62007216646485 4.06203641165097 0.210263080644126 0.215432173191753 0.203918780599638 0.205686449143653 0.204819874589815 0.210759461216844 0.211821567457750 0.211354578333490 0.212184931853700 0.207908226601899 0.203997804505732 0.200309796601473 0.200309796601473 0.211205392147171 0.202043587232245 0.200309796601473 0.209615249776758 0.212562569929537 0.212188075708366 4 4 + 6778952 6779898 6779331 6777798 6780162 + gene protein_coding_gene FALSE TRUE AT4G11120.1 translation elongation factor Ts (EF-Ts), putative similar to EMB2726 (EMBRYO DEFECTIVE 2726), translation elongation factor [Arabidopsis thaliana] (TAIR:AT4G29060.1); similar to ethylene-responsive elongation factor EF-Ts precursor [Lycopersicon esculentum] (GB:AAD46403.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.41280874118017 -2.34379120345929 0.0456806620187642 1 2.94939539047371 9.32082652496138 -0.41280874118017 0.235638297269912
AT4G14350_at 5.80731257917934 6.43246320405751 6.21092254406604 6.37491950030131 6.5758809500964 6.26276603773928 6.60473572725766 6.14793032664123 5.91553221022543 6.03895037660756 6.83101051004177 6.55743725464879 6.27264035629218 6.78773062209445 6.24174316445106 6.56636069257776 6.43515214535281 6.18600343002403 6.1085963353079 0.187552714611948 0.184412227634202 0.186760352979058 0.180877849734596 0.187918418546866 0.184200999604922 0.184217776340758 0.192407915991175 0.188418359525772 0.192535742118453 0.184611939015257 0.184332352010671 0.192522344688840 0.182465911292921 0.195214711824096 0.182752058722024 0.189761232285635 0.182455236525464 0.187141977805936 4 4 - 8256445 8258126 8257287.909 8256082 8260783 - gene protein_coding_gene FALSE TRUE AT4G14350.1|AT4G14350.2|AT4G14350.3 protein kinase family protein similar to kinase [Arabidopsis thaliana] (TAIR:AT2G20470.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G23310.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G03920.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE90852.1); similar to protein kinase MK6 [Mesembryanthemum crystallinum] (GB:CAB82852.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95893.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.285872631660939 2.34116741972126 0.0458720012008085 1 2.94564541769836 12.5550093983252 0.285872631660939 0.147291828027788
AT3G62400_at 8.53949364371156 8.96524967250087 9.01698142797219 9.13196381398282 8.98072535508981 8.45936341862403 9.07410021077854 9.08526073139674 9.2761262774026 9.00762514836852 9.76041361975797 9.7762356925884 9.54858730178817 9.9531971009657 9.37888665123016 9.95719804570177 8.98326765649178 9.30843864816941 8.92233157830892 0.172659294882818 0.166393557738945 0.170737394048207 0.175423762004187 0.169397618565328 0.186405982950086 0.168765055774063 0.167869099869085 0.173878699017568 0.164068721696378 0.166579638242531 0.166198465769464 0.164038692315884 0.165236275447864 0.170814038858032 0.167763146383192 0.186056331658960 0.170073665751902 0.173068452421775 3 3 + 23101429 23101612 23101505.455 23100617 23101713 + gene protein_coding_gene FALSE TRUE AT3G62400.1|AT3G62400.2 unknown protein 0.247908097106806 2.33931678780797 0.0460074378323276 1 2.94300078580286 18.2326284963971 0.247908097106806 0.118189110339902
AT3G09860_at 11.1210231151132 11.0480589145581 10.9402028105786 10.9543179144015 11.1560288122576 11.0118406067548 10.7060801364630 10.8765466375815 10.8326550084370 10.9480027796767 11.2465488187391 11.1146148856586 11.2196781290795 11.0827724062561 11.2978388513969 11.0841493708468 11.0968572745158 10.8542437503942 10.7978853382196 0.106585805983438 0.0994441586258656 0.112425305208283 0.109707060041181 0.0994441586258656 0.114954833663532 0.106296684609561 0.0994441586258656 0.116600819120677 0.0994441586258656 0.103693994790890 0.104833345163369 0.099812816075963 0.106315557873281 0.10041182402325 0.101697664413565 0.115256569048397 0.103740977335733 0.101016882289784 3 3 + 3026174 3026269 3026221 3026060 3027239 + gene protein_coding_gene FALSE TRUE AT3G09860.1 unknown protein 0.171371947742797 2.33901772419438 0.0460293618163566 1 2.94257343726791 21.9688135241162 0.171371947742797 0.0407219640671706
AT4G15420_at 7.57574939473469 8.01177202646928 8.12053583932117 8.38270888071431 8.48104062839284 8.30378286524056 8.0887591247075 7.95175536762588 8.12937241884468 7.9536670282455 8.03856776061961 8.1408248010082 7.93531631572679 8.35071493937186 7.65052096938778 8.06808954424956 8.00761329233582 8.10280474575826 7.942857505611 0.158217247695095 0.149834775248076 0.150585192403472 0.146868858850675 0.153799840401532 0.159488286147993 0.155584917885152 0.152190114255501 0.163429175075736 0.148821620185775 0.149269869648323 0.146868858850675 0.153907049008457 0.154840985831837 0.158182253400261 0.146868858850675 0.168196630718282 0.157633141082655 0.146868858850675 4 4 + 8825270 8825910 8825631.364 8823725 8826096 + gene protein_coding_gene FALSE TRUE AT4G15420.1 PRLI-interacting factor K similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.3); similar to Os01g0534800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043255.1); similar to hypothetical protein AN6987.2 [Asper (GB:XP_664591.1); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854); contains InterPro domain Peptidase, archaeal and bacterial C-terminal; (InterPro:IPR007280); contains InterPro domain SIAH-type; (InterPro:IPR013323) 0.221591151761534 2.33761179082645 0.0461325684341384 1 2.94056451916960 16.1372324477129 0.221591151761534 0.0962035738316997
AT1G02270_at 8.41984691205022 8.41020515814765 8.89608894523896 8.93348320320955 8.67547772973873 8.68696684700119 8.9005943718225 8.58762038563159 8.31746038706809 8.21976032415673 8.30938657518984 8.20649390527478 8.36012602551452 8.27642500032858 8.30079997176318 8.14581619763765 8.45804917094895 8.11290414505231 7.84580584280392 0.129609104093944 0.127867943654092 0.129226147251200 0.130488306900611 0.128206026640258 0.130843653952424 0.126614043099833 0.131536049016312 0.130085043533708 0.134022372230472 0.142197560226567 0.129688469200585 0.134787419400717 0.133184725458949 0.135345053708533 0.130423575031494 0.133531712848212 0.134014417493599 0.130718149594941 1 1 - 443312 444490 443905.091 443149 446235 - gene protein_coding_gene FALSE TRUE AT1G02270.1 endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family protein Identical to Putative uncharacterized calcium-binding protein At1g02270 [Arabidopsis Thaliana] (GB:O81916); similar to calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54130.2); similar to Calcium-binding EF-hand; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE85174.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.181006040169131 2.33708105247099 0.0461715886545504 1 2.93980619679141 16.8882482650917 0.181006040169131 0.0546085528406093
AT3G63410_at 11.2950947524610 11.3662214487887 11.1067431417953 11.0853295294348 11.0973804797396 11.1196773633938 11.9889152695509 11.9151829821144 12.0802116717234 11.9711764256969 12.1732221391863 12.3582281746234 12.0642302737922 12.1309313721071 12.2281785204324 12.3265926139891 12.0130473580515 12.2899658885933 11.8908731520331 0.0619150753604823 0.0609021718242603 0.0613782189455031 0.0627603068112631 0.0613540203901619 0.061949024200533 0.0611537007296518 0.0622143874694963 0.0628913347675446 0.0626528479649183 0.0626505274535631 0.0615588395554829 0.0623083979712766 0.0606791322896925 0.0636869164178452 0.0600133664958146 0.0649886376811652 0.0642422515799511 0.0633095574713147 3 3|0 -|/ 23426798 23427461 23427125.556 23426564 23428094 - gene protein_coding_gene FALSE TRUE AT3G63410.1 APG1 (ALBINO OR PALE GREEN MUTANT 1); methyltransferase Encodes a MPBQ/MSBQ methyltransferase located in the chloroplast inner envelope membrane. Mutant plants lack plastoquinone (PQ), suggesting that the APG1 protein is involved in the methylation step of PQ biosynthesis. The gene product is also involved in tocopherol (vitamin E) biosynthesis. similar to MPBQ/MSBQ methyltransferase 1 [Helianthus annuus] (GB:ABB52806.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.160887595929407 -2.33647167343624 0.04621643108078 1 2.9389355406373 23.4612197671172 -0.160887595929407 0.0185185883525569
AT1G32810_at 5.40427497755698 5.74397738849305 5.96567016763828 5.80649433568897 6.16339502266877 6.32812410547607 5.75383991700297 5.49754369692917 5.01076426464634 4.62574251857583 4.44782007213445 4.76431695773006 5.14024345851643 4.63071129871118 4.34158176513398 4.96123085304369 5.25966441275667 4.7476324069629 4.87530388913317 0.199933350649157 0.197560089208378 0.197355240188806 0.203008972426565 0.205093607906604 0.204786976390531 0.201853073529184 0.201149669214982 0.201550752990373 0.197800666923053 0.196114961188070 0.196287093960139 0.195110391087433 0.199000984271373 0.199500335826447 0.197222444902213 0.201064881589639 0.199119662563548 0.205464050107519 1 1|0 +|/ 11882422 11885795 11884120.95 11881790 11885823 + gene protein_coding_gene FALSE TRUE AT1G32810.2 protein binding / zinc ion binding similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT4G10600.1); similar to Leishmania major strain Friedlin proteophosphoglycan 5 [Leishmania major strain Friedlin] (GB:XP_843163.1); similar to OSJNBb0045P24.2 [Oryza sativa (japonica cultivar-group)] (GB:CAD39984.3); similar to Os04g0221600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052269.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.207695920938851 2.33538442003368 0.0462965465212659 1 2.93738219286240 10.6448751400528 0.207695920938851 0.0836335962061688
AT1G11430_at 9.38710191728108 9.66848460376336 9.09035724219535 9.27564441001458 9.57106198078302 9.00217656136761 9.76175933542575 9.83505974824205 9.24701395273804 9.64170605570785 9.07097126490383 9.54422608272197 9.43965584126298 9.20779586116388 9.79842149392844 9.35491487211407 9.34152560367853 9.32788345572831 9.44516963585998 0.107607913737200 0.110045635481554 0.122415026625429 0.111231580951326 0.111950645587078 0.120526258687752 0.112271906822769 0.118133911765247 0.121658386593882 0.110892201837659 0.118561009662860 0.112886721168869 0.111319042632272 0.109665831064355 0.111465227576125 0.110963597101218 0.118416847374765 0.110690321359499 0.110604196151491 1 1|0 +|/ 3847420 3848909 3848199.1 3847243 3849162 + gene protein_coding_gene FALSE TRUE AT1G11430.1 plastid developmental protein DAG, putative similar to plastid developmental protein DAG, putative [Arabidopsis thaliana] (TAIR:AT3G06790.2); similar to DAG protein, chloroplast precursor (GB:Q38732); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) -0.243623462292729 -2.33462002762690 0.0463529542870611 1 2.93629017175862 18.8641078203206 -0.243623462292729 0.115118574514847
AT3G06760_at 7.2316407478624 7.53923735209608 7.62816632133589 7.34874060369843 8.1480126214751 7.92549758961722 7.2141657116656 7.64089462057244 7.74349979056744 7.48940275966414 8.22026021518682 7.75617563402161 7.82540322407563 7.94883397052255 7.39566491510578 7.92509200658297 7.30361710262262 7.83258985436692 7.73886028780553 0.159540820324667 0.154619737017083 0.168901311368716 0.152717114469185 0.150765767352776 0.157117280375088 0.153845744586549 0.158404050672499 0.166467214208973 0.163331005522909 0.152418809939331 0.155824657961451 0.164887290546214 0.152391682314541 0.154009344594638 0.153900644187179 0.172455849220813 0.154575872688296 0.153587964589239 3 0|3 /|+ 2133207 2134316 2133991 2132843 2134562 + gene protein_coding_gene FALSE TRUE AT3G06760.1 similar to HRB1 (HYPERSENSITIVE TO RED AND BLUE) [Arabidopsis thaliana] (TAIR:AT5G49230.1); similar to fiber protein Fb2 [Gossypium barbadense] (GB:AAN77145.1); contains InterPro domain Drought induced 19; (InterPro:IPR008598) 0.237410005973722 2.33422853543838 0.0463818706258149 1 2.93573089959073 15.3011488933685 0.237410005973722 0.110036764603094
AT1G76850_at 8.75256328145416 8.5836930769137 8.83573842004986 8.61132710459522 8.78343271253888 8.75742289445264 8.58620596041946 8.09705593250934 8.32852325490205 8.21813897237661 8.6694121500627 8.40822598643406 8.34734936103602 8.15566020047082 8.52079715112775 8.34949136261016 8.5853463594518 8.4632375019857 8.15443206675409 0.16207508372135 0.158664012473525 0.161348475778794 0.15950019984052 0.157575684516057 0.161194266529565 0.154061290188985 0.173656888226352 0.170278918123470 0.169762507735660 0.159189441357071 0.155902421364491 0.157679094950546 0.160332757397552 0.159348790339695 0.155736505072683 0.161796579365205 0.174049304919964 0.169834313193709 1 0|1 /|+ 28858381 28859150 28858783.556 28852845 28859393 + gene protein_coding_gene FALSE TRUE AT1G76850.1 SEC5A (EXOCYST COMPLEX COMPONENT SEC5) Identical to Exocyst complex component 2 (Exocyst complex component Sec5) (SEC5A) [Arabidopsis Thaliana] (GB:Q8S3U9;GB:Q9C6K6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21170.1); similar to H0525E10.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66927.1); similar to Os04g0421900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052787.1); similar to OSJNBa0028I23.20 [Oryza sativa (japonica cultivar-group)] (GB:CAE04638.3); contains domain SUBFAMILY NOT NAMED (PTHR13043:SF3); contains domain FAMILY NOT NAMED (PTHR13043) 0.222921315610722 2.33359998151791 0.0464283343146971 1 2.9348329958801 16.9614989764458 0.222921315610722 0.0977141240731637
AT3G55070_at 8.16229724767729 8.20642087455907 8.10200208106578 8.05386300553695 8.50600589364365 8.32800264903827 8.33306132751173 8.31356129192131 8.21575731855154 8.11641809220644 7.66865333217173 7.61767907991717 7.77116049230495 7.94318316765866 7.47678715645355 7.9699006906507 7.82780768526629 7.84066667726693 7.9416386826047 0.135008213714969 0.129556464686573 0.13579225630223 0.143569264576490 0.132257179416693 0.131802644994778 0.131777479129037 0.129556464686573 0.141549885410465 0.133202171208975 0.136448513703497 0.131492735273325 0.130265085767268 0.129556464686573 0.144765691108714 0.133521294009543 0.135730504442090 0.140211662395518 0.133812286184621 3 3|0 +|/ 20420804 20421812 20421380.5 20419263 20422117 + gene protein_coding_gene FALSE TRUE AT3G55070.1|AT3G55070.2 similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE91354.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G37880.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif [Medicago truncatula] (GB:ABE91354.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) -0.166579178669583 -2.33339580348586 0.0464434374330032 1 2.93454132994493 16.178527371202 -0.166579178669583 0.0329848143121888
AT2G21270_at 8.82119670331967 8.82697660969003 9.2676685642503 9.25380108010975 9.40802077715 8.86146634291871 8.80710191203758 8.76148957884985 7.79128842856964 8.39676219500848 8.10888401710639 8.25354656119098 8.45778383527504 8.07766133958671 7.97090762859771 8.28282677567215 8.40322359597373 8.09296637005129 8.29391955629547 0.178950262095045 0.179365376335284 0.179299987737098 0.179755445828627 0.178497969768046 0.185238657640105 0.178497969768046 0.185221783103053 0.194645435828890 0.19270964262425 0.194546422978557 0.180768734299677 0.181354347630180 0.191622011122148 0.179403163765328 0.178497969768046 0.193594204651311 0.181709995442354 0.180965598079552 2 0|2 /|+ 9116432 9117037 9116674.333 9114629 9117342 + gene protein_coding_gene FALSE TRUE AT2G21270.1|AT2G21270.2|AT2G21270.3 ubiquitin fusion degradation UFD1 family protein similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT4G38930.2); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) 0.219433139470067 2.32970825194888 0.0467170493367617 1 2.92927430605951 17.1842810670689 0.219433139470067 0.0949481960308615
AT3G22170_at 7.71828996688352 8.13296032096041 8.24410500990037 8.28289088683812 8.9697124547109 8.24136095386075 8.17237663978283 7.92569870277174 7.70451597978491 7.46702064992299 7.51161434229886 7.80160045224687 7.89882424786386 8.08495394786818 7.28323664519815 7.89346582780965 7.32632416875808 7.55248011048117 7.43810794733078 0.203000029115195 0.191587490203752 0.197785062161881 0.192344240445404 0.196907880171969 0.213414021484975 0.192380226944023 0.191587490203752 0.210080738574646 0.196638194404734 0.194421109667673 0.191587490203752 0.200742220331224 0.193290880946461 0.198754248692830 0.195031658139031 0.214354995158779 0.192589090397857 0.208157641536360 3 3 - 7822366 7823543 7823075.3 7822025 7825891 - gene protein_coding_gene FALSE TRUE AT3G22170.1 FHY3 (far-red elongated hypocotyls 3); zinc ion binding A component of the PHYA signaling network, mediates the FR-HIR response to far-red light in concert with FAR1 similar to FAR1 (FAR-RED IMPAIRED RESPONSE 1), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G15090.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.289850097098644 2.32918306289807 0.0467561479032598 1 2.92852425823858 15.8137296970445 0.289850097098644 0.15134140008918
AT3G12390_at 10.4983057393567 10.4969786853754 10.1310149055837 10.0769963090610 10.3346029536317 10.2300554216104 10.4933204107917 10.5860136480980 10.1268449177771 10.1753378656410 10.2790120996181 10.3441007102680 10.1990092835683 10.1048252363305 10.376802747437 9.9935225660042 9.9117691190051 10.1649793196285 10.2135216782198 0.0600760753422981 0.0590359605406034 0.0604779709180549 0.0613491940388469 0.0602266856273256 0.0615858650373469 0.0607479597844007 0.0627979177534176 0.0725625205026945 0.0612985894635634 0.0625776127999519 0.0590359605406034 0.0598218661603468 0.064080295509012 0.0601164366169174 0.061878651679866 0.0625417958367458 0.0610752553996328 0.0593595264188719 3 0|3 /|+ 3943079 3943567 3943377.556 3942264 3943816 + gene protein_coding_gene FALSE TRUE AT3G12390.1 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative Identical to Nascent polypeptide-associated complex subunit alpha-like protein 1 (NAC-alpha-like protein 1) (Alpha-NAC-like protein 1) [Arabidopsis Thaliana] (GB:Q9LHG9); similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G49470.1); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABD32881.1); similar to Os01g0938900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045343.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.162818037706956 -2.32636503325316 0.0469664970045206 1 2.92450009410139 20.5277380704111 -0.162818037706956 0.0259247164366405
AT1G16920_at 6.17012322500886 6.81554300805692 5.36518620687677 5.29746170674460 5.75383615368066 6.3640794003577 6.22212185615602 7.00852864403632 7.41202964152141 7.0771140826035 7.75554056150423 8.23238031626368 7.38057873707508 7.39415013893893 7.89643988923567 6.61483585569629 6.21414467194209 7.67327519221334 7.3133796014971 0.231615312700211 0.224402445922892 0.227990016067777 0.236017925971393 0.225558509330979 0.230961487055617 0.227848782631774 0.233603745449474 0.240288774452289 0.226546890561082 0.222319017705072 0.229392322559839 0.226604866928942 0.230608768996649 0.232879264489060 0.225670152701861 0.239911800233857 0.227865081695340 0.224542269072003 1 1|0 -|/ 5787482 5789041 5787942.6 5787323 5789242 - gene protein_coding_gene FALSE TRUE AT1G16920.1 RAB11 (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding small GTP-binding protein (Rab11)similar to YPT3/RAB11 proteins in yeast and mammals, respectively. YPT3/RAB11 is involved in intracellular protein trafficking. Identical to Ras-related protein Rab11 (RAB11) [Arabidopsis Thaliana] (GB:Q39222); similar to AtRABA1d/AtRab11B/AthSGBP (Arabidopsis Rab GTPase homolog A1d), GTP binding [Arabidopsis thaliana] (TAIR:AT4G18800.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02113.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.365638960624131 -2.32573913152809 0.0470133443490719 1 2.92360639445046 13.4559479978977 -0.365638960624131 0.205635677563966
AT1G11530_at 9.58986466345405 9.93810166098192 9.87894212354115 9.91470158734409 10.5191965222155 10.0323304235946 9.48804302874924 9.42935776452364 9.07066064488559 9.11906709328346 9.18549897311913 8.64269325735798 9.48279282528017 9.3364945180721 8.73284370992856 9.37183780877512 9.36406395230501 9.03285262999367 9.28773988618084 0.14390598929604 0.138028482088252 0.142783047024910 0.136983885623410 0.146311147951583 0.147754993456319 0.143118198835142 0.135207863393892 0.151587217558394 0.140221721644930 0.141362486157401 0.141267956034484 0.140351791438970 0.141120940784352 0.135576509987008 0.137274165038169 0.145699164655219 0.139772234948490 0.140412893179908 1 0|1 /|+ 3874875 3875280 3875073.3 3874437 3875484 + gene protein_coding_gene FALSE TRUE AT1G11530.1 ATCXXS1 (C-TERMINAL CYSTEINE RESIDUE IS CHANGED TO A SERINE 1); thiol-disulfide exchange intermediate Encodes a single cysteine active site thioredoxin-related protein, similar to thioredoxin H-type from Arabidopsis thaliana SP:P29448, Nicotiana tabacum SP:Q07090; contains Pfam profile: PF00085 Thioredoxin; Identical to Thioredoxin-like 4 [Arabidopsis Thaliana] (GB:Q8LDI5;GB:Q9SYX9;GB:Q9XH49); similar to ATTRX1 (Arabidopsis thaliana thioredoxin H-type 1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G51030.1); similar to thioredoxin h [Hevea brasiliensis] (GB:AAD33596.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.229714859658651 2.32571202311784 0.0470153744019546 1 2.92356768821109 19.0002125138692 0.229714859658651 0.104268889364665
AT3G54660_at 10.6125289534628 10.5881456793254 10.6311383368364 10.6643572388471 10.6379704183175 10.3728740153787 11.7059786583359 11.5105303667699 11.0260764511912 11.2152752429557 11.254071417556 11.2452737924284 11.2665278204818 11.2324183121093 11.3410983655745 11.3920153429383 11.4008439436428 11.4420686933389 11.2350732788392 0.0699955287903745 0.067605875800639 0.0704581272271174 0.0691013093977424 0.0685792415297576 0.0739569770110446 0.0696282961771358 0.0710150668109346 0.072410182623812 0.0691957791821491 0.0683203186594398 0.067605875800639 0.067605875800639 0.0710060931171586 0.067605875800639 0.0683992207046962 0.0693853239486295 0.067605875800639 0.0694937334412544 3 3|0 -|/ 20241499 20242286 20241717.333 20240722 20244160 - gene protein_coding_gene FALSE TRUE AT3G54660.1 GR (GLUTATHIONE REDUCTASE); glutathione-disulfide reductase Encodes glutathione reductase that is most likely localized in the chloroplast. Identical to Glutathione reductase, chloroplast precursor (EC 1.8.1.7) (GR) (GRase) [Arabidopsis Thaliana] (GB:P42770); similar to ATGR1, glutathione-disulfide reductase [Arabidopsis thaliana] (TAIR:AT3G24170.2); similar to glutathione reductase [Brassica juncea] (GB:AAD28177.1); similar to glutathione reductase [Brassica juncea] (GB:AAK27157.1); similar to glutathione reductase (NADPH) [Vitis vinifera] (GB:AAB70837.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Glutathione reductase, plant; (InterPro:IPR006324); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.182364762724250 -2.32550677614394 0.0470307474485232 1 2.92327463218265 22.0807394760779 -0.182364762724250 0.057441161832624
AT1G65295_at 5.76362764386855 6.42728508923362 6.05987908545692 6.2829566636484 7.21837191488589 6.9015888081945 7.51988150326567 7.3888348931911 7.40789976702841 7.04797428585686 8.33743377872038 8.1148368789638 8.1175930938375 8.17837032502501 7.76100324818866 7.5752242493562 6.86466316097492 7.74656908703611 6.9718032542559 0.235089991866917 0.218910406096590 0.239868284000148 0.230365532614412 0.223848566411194 0.241558954006651 0.239497275746948 0.229757604096397 0.241059900868384 0.226291688516137 0.222593702806904 0.224024456276744 0.236595025827462 0.244984943641927 0.235216615483061 0.218910406096590 0.239308257365970 0.229728672356463 0.229888852603911 1 1|0 +|/ 24255252 24255693 24255546.1 24255174 24255966 + gene protein_coding_gene FALSE TRUE AT1G65295.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01015.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28368.1) 0.267597230519565 2.32510279121611 0.0470610206100239 1 2.92269782441032 14.1850636152897 0.267597230519565 0.134908243854846
AT4G14110_at 8.29593502292816 8.22440235782378 8.43666148605013 8.54863024202034 8.82025944568944 8.08791057105093 7.80020489237672 7.71761501568097 6.626798305608 7.01127042930539 6.55273535979351 7.03310483989967 6.96290486847207 7.01106581134838 7.33601203596932 7.16316911339195 7.27845648437562 6.61167892714255 7.1699427541869 0.186568346801562 0.183292603699568 0.193957922810756 0.186005518165583 0.196230862027498 0.188904166905187 0.192135801690399 0.186671271709352 0.219973528132155 0.187090875244275 0.200672526687677 0.184910448151982 0.191335252677174 0.190786535630303 0.189163717536853 0.187610746740326 0.198945108645798 0.188603630371184 0.185012777400057 4 4|0 -|/ 8133050 8134812 8133934.25 8132881 8134915 - gene protein_coding_gene FALSE TRUE AT4G14110.1 COP9 (CONSTITUTIVE PHOTOMORPHOGENIC 9) Represses photomorphogenesis and induces skotomorphogenesis in the dark. A component of the COP9 signalosome complex. Identical to COP9 signalosome complex subunit 8 (CSN complex subunit 8) (Constitutive photomorphogenesis protein 9) (FUSCA protein 7) (FUSCA7) (CSN8) [Arabidopsis Thaliana] (GB:P43255;GB:Q8GWZ4); similar to COP9 (GB:AAA96516.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.26073160717467 2.32493748539212 0.0470734136102842 1 2.92246180557948 15.2062747590772 0.26073160717467 0.129595863143739
AT1G64430_at 6.70227819176601 6.51000697379281 6.49703871125499 5.52537344024507 7.03576047811465 6.69819947619045 7.32159839587519 7.25612199174958 7.37844473424708 7.309509481149 7.3147043755187 7.46203409792013 7.15541933755687 7.23878652057592 7.38765346941705 7.72205521582072 7.05115295672063 6.97838880075228 7.6369142282711 0.201090806327285 0.185318576900792 0.215589071675780 0.207489579712032 0.188481527450599 0.200565174890789 0.185752233964855 0.194388274413224 0.19545028320965 0.183127486171474 0.184457633591667 0.183127486171474 0.184612645808497 0.198995740922234 0.189302529491098 0.183127486171474 0.207114406539956 0.20411048932396 0.184657422198600 1 1|0 +|/ 23938788 23939968 23939152 23937043 23940530 + gene protein_coding_gene FALSE TRUE AT1G64430.1|AT1G64430.2 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01686.1); similar to Os08g0332700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061569.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.330628414807522 -2.32300641919331 0.0472184263675553 1 2.91970486013101 14.0584957880441 -0.330628414807522 0.181446491274137
AT2G43235_at 5.97745382213076 6.49317789150667 5.95624598989657 6.16930779809618 6.33169176327056 6.24493972902417 7.05203814339098 6.5931548709884 6.1459998026367 5.73573502962426 5.36166945013568 5.24679419506354 5.95119277301853 6.00105509763784 5.30873730471534 5.94066532069172 6.21379557599738 5.68153041423318 5.730076893667 0.224173082155735 0.225351653686930 0.221111237834000 0.218373018412358 0.231992926377336 0.223176205811393 0.229423318448681 0.229523600285256 0.230776882195286 0.227134363974307 0.225488942268894 0.222302760520731 0.229054151456930 0.222139349094302 0.223888708952882 0.220761595333922 0.218373018412358 0.231405668321548 0.222320656597081 2 2 - 17975995 17977348 17976829.1 17975775 17977912 - gene protein_coding_gene FALSE TRUE AT2G43235.1 sugar porter similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55664.1); similar to Os05g0299200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055128.1); contains InterPro domain Nucleotide-sugar transporter; (InterPro:IPR007271) -0.255416877069166 -2.31913490800109 0.0475104945170269 1 2.91417855493202 12.1441432135777 -0.255416877069166 0.125922262977261
AT1G54115_at 8.31016563015186 8.86218695492146 8.77358153436541 8.87973609254738 9.06051063896986 8.58180534035218 8.29452993972097 8.36420936191712 7.17870409078334 7.89222676859872 7.88972072403064 7.56821600267315 8.28634082155332 7.60770416779647 8.01166207617831 8.13780722626992 7.81598393926702 7.98360902832906 8.21529974318168 0.179769934563369 0.177087960182979 0.183350479712304 0.183585554028677 0.176360956458773 0.183747829468031 0.177358939002196 0.18507614276366 0.212575280491303 0.177080822266262 0.194845862060640 0.175330958195546 0.182120224658672 0.192073341901250 0.181207835161805 0.178646310369154 0.18927902707809 0.189599971995513 0.181645221987141 1 1 + 20207151 20207633 20207395.909 20205786 20207845 + gene protein_coding_gene FALSE TRUE AT1G54115.1 cation exchanger, putative similar to CAX9 (CATION EXCHANGER 9), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G14070.1); similar to Sodium/calcium exchanger membrane re (GB:ABE92415.1); similar to Os03g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049159.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) 0.258344530310921 2.31788922740518 0.0476048501783297 1 2.91240071427211 16.4781943695100 0.258344530310921 0.128341977427621
AT1G07170_at 7.9659047486812 8.26718835178725 8.19614279704104 8.26068954615467 8.60993182234099 8.69769023616796 6.94501637817003 7.02875527912088 7.92851320594003 7.54630596435324 7.35915770943104 6.91833162633606 7.11719863497444 7.47617034473385 6.77657805436197 7.43117407219547 7.37267309225722 7.41626917065285 7.80436287740511 0.208727154492448 0.200822588817044 0.202837059262586 0.207332334985441 0.195514637211840 0.209167544758903 0.195514637211840 0.197579272263883 0.208577323564939 0.208512460491120 0.1998162489548 0.204295385586650 0.200984018674481 0.204659535184733 0.196932142790218 0.199445937178736 0.212491280346204 0.200967422999298 0.201968767894851 1 1 + 2200685 2200962 2200818.818 2200133 2201145 + gene protein_coding_gene FALSE TRUE AT1G07170.1|AT1G07170.2 Identical to Hypothetical protein At1g07170/At2g30000 [Arabidopsis Thaliana] (GB:O80873); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30000.1); similar to Os04g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054163.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_799069.1); contains InterPro domain PHF5-like; (InterPro:IPR005345) 0.181557074935697 2.31661079791861 0.0477018799743901 1 2.91057627673771 15.4930006136083 0.181557074935697 0.0573048341632018
AT3G20060_at 9.16990339138234 9.52147306922008 9.22491829653014 9.39038027052155 9.38269074524334 9.27601385027948 9.48093842979466 9.5044759742479 9.30948163045896 9.48966432357723 9.24191786381941 9.00737612254752 9.26084009752807 9.09911816939614 9.0497212001386 9.44407499017777 9.0035940034622 9.13605523059555 9.51720232184451 0.122358074786113 0.121063781127759 0.125617741562544 0.133281105717815 0.126942502379452 0.122584757965115 0.125720920423452 0.123105800687992 0.132229846643814 0.125760832773018 0.131379311646291 0.125310701157787 0.131049783664354 0.131349721749227 0.126866882920985 0.122379997903377 0.127910608240046 0.130479373818286 0.123169686449965 3 3|0 -|/ 7002936 7004249 7003595 7002823 7004456 - gene protein_coding_gene FALSE TRUE AT3G20060.1|AT3G20060.2 UBC19 (ubiquitin-conjugating enzyme 19); ubiquitin-protein ligase|UBC19 (ubiquitin-conjugating enzyme 19) Encodes one of two ubiquitin-conjugating enzymes belonging to the E2-C gene family (the other being UBC19). Transcript is always found in dividing cells, but also in other non-dividing cells. Protein is localized to the cytoplasm as well as to the nucleus. similar to UBC20 (ubiquitin-conjugating enzyme 20), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G50490.1); similar to hypothetical protein DDBDRAFT_0206182 [Dictyostelium discoideum AX4] (GB:XP_641954.1); similar to Os01g0273100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042713.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) -0.192071237218183 -2.31197019085 0.0480557443636484 1 2.90395492322100 18.6659092375700 -0.192071237218183 0.0698491326224934
AT1G73670_at 7.82554914980881 7.83956362580486 7.79842409799798 7.63846863316439 8.24896777891812 7.81222620726416 8.86100393281006 8.81342791338733 8.42972330924378 7.36009168556944 7.83779613222155 7.49624654658518 8.4871462318239 8.29446276689223 7.25674669550761 7.75932291644601 7.79174912433086 7.93976641513065 7.61965004219847 0.192318598242495 0.178416519239208 0.186719738761948 0.186288347449578 0.182587411956585 0.191187659353329 0.180755944345751 0.190760231611008 0.186212761544585 0.186118792938647 0.178355910727223 0.181706100798775 0.181683390150354 0.178355910727223 0.192669643615719 0.178796161173658 0.190931510840263 0.184326209483103 0.178927660689505 1 1|0 +|/ 27704738 27705870 27705273.444 27703711 27707101 + gene protein_coding_gene FALSE TRUE AT1G73670.1 ATMPK15 (Arabidopsis thaliana MAP kinase 16); MAP kinase/ kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 15 (EC 2.7.11.24) (MAP kinase 15) (AtMPK15) (MPK15) [Arabidopsis Thaliana] (GB:Q9C9U4;GB:Q94EY5); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to MPK9 (MAP KINASE 9), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G18040.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to double HA-tagged mitogen activated protein kinase 15 [synthetic construct] (GB:ABG54342.1); similar to double HA-tagged mitogen activated protein kinase 8 [synthetic construct] (GB:ABG54335.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.202807442418290 -2.31140363589688 0.0480991245199037 1 2.90314667853338 15.9352337253717 -0.202807442418290 0.080946091797487
AT3G05520_at 8.0251347931322 7.8290552440193 7.79692247507657 7.6556249858934 8.15621744215081 8.22446620998309 8.35068921793028 8.09179097381652 6.8419377693903 7.73179653161912 8.07399709327684 7.8409686032151 7.92170303009125 7.81890395212158 7.8703821758586 7.4074195081522 7.80827662289944 7.75421826992877 7.40234355195988 0.128080678760547 0.125588974133254 0.136987691839884 0.129103932681955 0.133427141699121 0.132182192533143 0.123848362492345 0.129258396662814 0.154502967966329 0.131667620793983 0.134076120204105 0.126866291996025 0.130434333961466 0.138448032995415 0.132276289136663 0.127138552991733 0.132451268035487 0.129936052595468 0.126696350828833 3 3|0 +|/ 1599830 1601061 1600529.25 1598553 1601306 + gene protein_coding_gene FALSE TRUE AT3G05520.1 F-actin capping protein alpha subunit family protein Identical to F-actin capping protein subunit alpha (CapZ-alpha) [Arabidopsis Thaliana] (GB:O82631;GB:Q9MA66); similar to F-actin capping protein, alpha subunit [Medicago truncatula] (GB:ABE92863.1); contains InterPro domain F-actin capping protein, alpha subunit; (InterPro:IPR002189) 0.185382296835633 2.31119112975205 0.0481154057798042 1 2.90284352572676 15.5849091383833 0.185382296835633 0.0624193479447671
AT2G28350_at 5.77721017524105 5.63686842738867 7.19920013243352 7.21911452602854 7.0970533526599 6.2426144714889 7.2214129236324 6.76760151018961 5.52472248139525 6.00062616815677 5.60216327803655 6.09007816562746 6.12017265435774 6.35238605459036 4.95740304623416 6.31784613956802 6.67616849241326 5.48327081570396 6.22031950459952 0.192479433345224 0.185516181983679 0.191978012825777 0.186066668311668 0.195757823795981 0.188050515103405 0.195344987811879 0.184882974616548 0.197225801056977 0.193907812010970 0.188553479871723 0.184644739552172 0.186712362097147 0.184644739552172 0.201112265722578 0.184644739552172 0.195938535925918 0.197058699666471 0.186720174311435 2 2 + 12122999 12123358 12123171 12121408 12123925 + gene protein_coding_gene FALSE TRUE AT2G28350.1 ARF10 (AUXIN RESPONSE FACTOR 10); miRNA binding / transcription factor Involved in root cap cell differentiation. Identical to Auxin response factor 10 (ARF10) [Arabidopsis Thaliana] (GB:Q9SKN5;GB:Q9SQ86); similar to ARF16 (AUXIN RESPONSE FACTOR 16), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G30080.1); similar to Auxin response factor 16, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54297.2); similar to Os06g0685700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058399.1); similar to auxin response factor 10 [Oryza sativa] (GB:BAB85919.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.311717862152854 2.30969379606430 0.0482302798924523 1 2.90070760510305 12.5777138393163 0.311717862152854 0.169213748454380
AT2G44090_at 7.33338124230278 7.18992859121627 6.89168716584586 6.88270855544746 6.87821166488972 6.88761956658383 7.43608266128909 7.3242258908971 6.64900675995336 7.0554813096621 7.04210389732787 7.2372515258114 6.74345474255347 6.8702141105111 6.9155124974026 7.22683505926485 7.19033893811874 7.15907192087327 7.1171201240943 0.162158172435949 0.166419751034997 0.18753972602907 0.169000756196654 0.170217016835483 0.179072234345902 0.169858513425408 0.178235233145819 0.180809787537181 0.165972263217771 0.166912602338565 0.169961723057384 0.176305372592418 0.173591264076126 0.168764096831507 0.175178749026476 0.176769329447635 0.163226485411586 0.174567419399727 2 2 - 18245790 18246324 18246103.182 18245436 18248392 - gene protein_coding_gene FALSE TRUE AT2G44090.1|AT2G44090.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G59910.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96769.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA92347.2); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84657.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.1641430431608 -2.30921189216025 0.0482673090061889 1 2.90002022084644 14.0972976178354 -0.1641430431608 0.0315604095355715
AT1G21900_at 8.82475871989973 8.96775804581167 9.52684202725377 9.50803368516438 9.09546427372741 8.80906423929214 8.59632659778511 8.5822353455388 7.96912898564218 7.41838000123012 7.1048232664822 7.2770872392937 7.87122468810839 7.82587881492189 7.10188659641379 7.77157861973488 7.520823251601 7.43667387798342 7.4787545673047 0.199086505561499 0.199053232312751 0.205364969038085 0.199225331039292 0.198948461549680 0.215283602696868 0.195595304210635 0.200072733287755 0.20449498160314 0.198314680415060 0.197130126685255 0.197317520331589 0.199191235646562 0.206505534309623 0.205456115212526 0.195595304210635 0.199980443173631 0.195595304210635 0.195595304210635 1 1|0 -|/ 7691215 7692210 7691833.6 7690791 7692427 - gene protein_coding_gene FALSE TRUE AT1G21900.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G09580.1); similar to Os06g0210100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057112.1); similar to Os02g0768200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048237.1); similar to emp24 protein [Hyacinthus orientalis] (GB:AAT08688.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.179370286012836 2.30651982594931 0.0484746848923744 1 2.89618066736454 16.544227814664 0.179370286012836 0.0555465316542337
AT4G37930_at 13.0529742184770 13.1393149666081 12.9830435076759 13.0271089493519 13.1017599582219 12.8995797699449 13.6754479875335 13.7290079126928 13.8740424945194 14.0410139199023 14.0680460574225 14.0603566950043 13.9860206096457 13.995472690149 13.9646078489160 14.2365792508414 13.6719660784208 14.1042796153974 13.9390879548810 0.0697217905456127 0.0652160830078947 0.0722377203055973 0.065910826421094 0.067327660940761 0.0704266288887644 0.072360631512185 0.0663278377485409 0.0722309109926246 0.0668653799853016 0.0673783174775086 0.0666989381304519 0.0652160830078947 0.069355432239394 0.0672951969514422 0.066290910251577 0.071785561275058 0.0665688538786464 0.066864159199697 4 4|0 -|/ 17831923 17832849 17832353.7 17831725 17834921 - gene protein_coding_gene FALSE TRUE AT4G37930.1 SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1); glycine hydroxymethyltransferase Encodes a protein with mitochondrial serine hydroxymethyltransferase activity, which functions in the photorespiratory pathway, catalyzes the conversion of serine and tetrahydrofolate to glycine and 5,10-methylene tetrahydrofolate. Involved in controlling cell damage caused by abiotic stress, such as high light and salt and the hypersensitive defense response of plants. Identical to Serine hydroxymethyltransferase, mitochondrial precursor (EC 2.1.2.1) (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) (SHM1) [Arabidopsis Thaliana] (GB:Q9SZJ5;GB:Q940M9); similar to SHM2 (SERINE HYDROXYMETHYLTRANSFERASE 2), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT5G26780.1); similar to Glycine hydroxymethyltransferase [Medicago truncatula] (GB:ABE84180.1); similar to Serine hydroxymethyltransferase, mitochondrial precursor (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) (GB:P50433); similar to Serine hydroxymethyltransferase 1, mitochondrial precursor (Serine methylase) (Glycine hydroxymethyltransferase) (SHMT) (GB:P49357); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) -0.168389287869427 -2.30514734077000 0.0485807505318893 1 2.89422341965556 27.1821784398927 -0.168389287869427 0.0398935038573403
AT1G71130_at 6.55517680586488 7.00689596344515 6.80341286439157 6.61647965611224 7.88041920214887 7.82423905390993 7.07012431948979 6.59101820387727 6.99725311039695 6.60379131854744 7.04150221323783 6.42516482287105 6.30947879181625 7.23105485274329 6.52801059207853 7.03285381861373 7.29893493018677 6.1328502359863 6.60585275729255 0.205292296223743 0.201861536899842 0.202672527879148 0.202969467442752 0.217767585746854 0.210459897605569 0.204542188216780 0.201861536899842 0.217048231754405 0.204387635767324 0.203235447451945 0.204481463821307 0.218972667286425 0.201861536899842 0.206198615246303 0.214746774466701 0.215007861498153 0.212854300679397 0.206850640086596 1 1 + 26826574 26826996 26826791.273 26826450 26827192 + gene protein_coding_gene FALSE TRUE AT1G71130.1 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G22985.1); similar to TSI1 [Nicotiana tabacum] (GB:AAC14323.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.244841378875393 2.30269882608628 0.0487705438298099 1 2.89073212121517 13.7862775974570 0.244841378875393 0.118853799576140
AT2G19430_at 7.0919621798331 7.02433336265697 7.16300686633437 7.23488419490264 7.10997248108806 7.16461206870865 6.75178092316373 6.25249366266772 5.74489886430245 5.94372140264434 5.78518839830332 5.55820429329968 6.02652385035916 5.74021527879477 5.77034613905349 6.14146848239613 6.63488900990968 5.77490271642561 6.00263092179505 0.267216246189962 0.270335568034132 0.262192124431259 0.259856938609094 0.266392222184508 0.259340045101483 0.25931794982415 0.266958779838125 0.276397864483326 0.265137040140561 0.260542911483427 0.25931794982415 0.25931794982415 0.25931794982415 0.268401513748985 0.25931794982415 0.263530129755499 0.262111556984609 0.265006311929353 2 0|2 /|+ 8423062 8424780 8423873.111 8422241 8425042 + gene protein_coding_gene FALSE TRUE AT2G19430.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to Os09g0363600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062993.1); similar to MGC130957 protein [Xenopus laevis] (GB:AAI08528.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.209929956082582 2.30218004667398 0.0488108506482989 1 2.88999247346181 12.8871562177436 0.209929956082582 0.0885818902775133
AT3G21790_at 6.85437165291594 6.87227374270684 7.0160720177703 6.57221097615299 7.10004199580729 6.62515901949992 5.61518684696414 5.6874759240517 5.31900594437553 6.06835780810621 4.5086815548517 4.63604645872977 5.04936998707987 4.9923082561937 4.52651693498895 5.31735315385996 5.00677136862182 4.1194611142517 6.06123898965425 0.218628556398135 0.222315827363344 0.212257794608482 0.221505707177574 0.222405847792580 0.222677538622577 0.210825726811011 0.222489205956518 0.223911991518035 0.218936977864842 0.215805644716454 0.222854967871784 0.218265029218355 0.215589983492102 0.220146814557783 0.210825726811011 0.217088805689667 0.218672645488810 0.216204979057918 3 3 - 7677003 7677499 7677247.091 7676934 7678421 - gene protein_coding_gene FALSE TRUE AT3G21790.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT3G21800.1); similar to UDP-glycosyltransferase 71E1 [Stevia rebaudiana] (GB:AAR06914.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.237796674912591 -2.30063933464973 0.0489307519028818 1 2.88779595763167 11.8357312807924 -0.237796674912591 0.113224928249151
AT2G34680_at 7.64473854117222 7.89868108358675 5.98284336391828 7.02907484133993 7.74308910531972 7.91816819816988 7.95575449855329 8.39819885835643 8.89424696113622 9.14530858308757 9.36922797765091 9.37972608213975 8.90265605675071 9.4081379409712 9.20473028534031 9.14921933579336 8.55334049867603 9.4429298254577 9.22391483966824 0.203219131493817 0.175042826681863 0.225344042945101 0.187555138737699 0.175459351851923 0.18931539445568 0.180348531312375 0.172798419446540 0.181126480675729 0.178462427075742 0.168647603352170 0.170501722371288 0.177233513249201 0.167837218070571 0.167837218070571 0.167837218070571 0.187972447323667 0.181579965398945 0.171746372420424 2 2|0 -|/ 14624045 14624963 14624297.125 14623701 14636208 - gene protein_coding_gene FALSE TRUE AT2G34680.1 AIR9 (Auxin-Induced in Root cultures 9); protein binding isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G78230.1); similar to putative leucine rich repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30535.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.358813414590033 -2.29996880593149 0.0489830249605934 1 2.88684008805433 16.7033532921245 -0.358813414590033 0.203697676205304
AT3G02880_at 6.40219025204719 7.15115579720565 6.74536850892618 6.71366466936653 6.49426398656788 7.19614687868886 6.81151099827518 7.37230931063364 7.1199620813608 6.23859313677188 7.65622869613031 7.97333885385516 7.7920859723702 7.87685377835316 7.9828315926671 7.61794001990907 7.09748445603142 7.36480495148583 7.06927566379236 0.193456963442527 0.185902342597327 0.197553806413896 0.189675573470226 0.180894793126378 0.191281428993548 0.181205156715641 0.184877315871682 0.195590574490695 0.187009313642406 0.185273619522989 0.180894793126378 0.183760771388197 0.182157058302657 0.189150902973497 0.180894793126378 0.199250930074153 0.186042248564089 0.185696957572529 3 3|0 +|/ 636346 636944 636677.4 634660 637289 + gene protein_coding_gene FALSE TRUE AT3G02880.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G16590.1); similar to Os03g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049422.1); similar to Putative leucine-rich repeat transmembrane protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAN05336.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.356994250402776 2.29938904625573 0.0490282664895677 1 2.88601364805281 14.1005628005849 0.356994250402776 0.202487923513006
AT1G49240_at 10.0847170592719 10.1148006363604 9.46094953146201 9.60596841816493 10.3792627833679 10.2740031266999 9.67807693987168 9.981714782194 10.3373935261226 9.84345444653673 10.0408172293631 9.9711793302017 10.0297829681341 9.86678223318907 9.72222900157668 9.60072571530187 9.47687593099822 9.76368338339296 10.2416951705175 0.105849459432236 0.104105528110240 0.105886385175786 0.104158508962461 0.106288357230221 0.114292769466024 0.104384049468233 0.106480983005077 0.112189786307796 0.100935285692017 0.102478104416705 0.103054271351172 0.100292229439014 0.110128214663586 0.105948555674858 0.108092893091537 0.102042780541711 0.102158396216104 0.100940238033380 1 1 + 18221018 18221576 18221201 18219540 18221981 + gene protein_coding_gene FALSE TRUE AT1G49240.1 ACT8 (ACTIN 8); structural constituent of cytoskeleton Member of a subclass of actins composed of ACT2 and ACT8. Its mRNA is strongly expressed in strongly expressed in leaves, roots, stems, flowers, pollen, and siliques. However, protein expression, assayed by a ACT8:GUS fusion reporter, is very low in pollen. Identical to Actin-2 (ACT2) [Arabidopsis Thaliana] (GB:Q96292;GB:Q42056); Identical to Actin-8 (ACT8) [Arabidopsis Thaliana] (GB:Q96293;GB:Q41933;GB:Q9M9C2); similar to ACT2 (ACTIN 2), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G18780.2); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin 8 (GB:AAC49523.1); similar to actin [Brassica oleracea] (GB:AAD02328.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.183309814936682 -2.29783454852324 0.0491497762800173 1 2.88379788811724 19.9223652538801 -0.183309814936682 0.0612356889704321
AT1G07320_at 11.0463433668264 11.0089824686334 10.3693375552846 10.3637567449722 11.0399867795896 10.8214567640653 11.3174229433422 11.2554586190379 11.2898266186334 11.2738913752152 11.5570804212504 11.7477200703940 11.3402581041813 11.2282680108767 11.9948022359615 11.4625401399833 11.0624092591527 11.4084143597236 11.3432939737865 0.0590784419302569 0.0578800220816704 0.058730026255227 0.0578995622607341 0.0593389781708735 0.0594336577552817 0.0601510842372765 0.0589188163260986 0.0591972426045748 0.0589753558986075 0.0582595661702767 0.0588131535222578 0.0596270774574574 0.0621180285157173 0.0582982435028487 0.0578800220816704 0.0625603054824232 0.0578800220816704 0.0588347993530938 1 1 + 2249442 2249963 2249688.818 2249132 2250526 + gene protein_coding_gene FALSE TRUE AT1G07320.1|AT1G07320.2|AT1G07320.3|AT1G07320.4 RPL4 (ribosomal protein L4); structural constituent of ribosome encodes a plastid ribosomal protein L4 Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV1); similar to ribosomal protein L4 family protein [Arabidopsis thaliana] (TAIR:AT2G20060.1); similar to 50S ribosomal protein L4, chloroplast precursor (R-protein L4) (GB:O49937); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136)|Identical to 50S ribosomal protein L4, chloroplast precursor (CL4) (R-protein L4) (RPL4) [Arabidopsis Thaliana] (GB:O50061;GB:Q8LF27;GB:Q8VZS1;GB:Q9LNV1); similar to ribosomal protein L4 family protein [Arabidopsis thaliana] (TAIR:AT2G20060.1); similar to ribosomal protein L4 [Spinacia oleracea] (GB:CAA63651.1); similar to 50S ribosomal protein L4, chloroplast precursor (R-protein L4) (GB:O49937); contains InterPro domain Ribosomal protein L4/L1e, bacterial like; (InterPro:IPR013005); contains InterPro domain Ribosomal protein L4/L1e; (InterPro:IPR002136) -0.167784067918332 -2.29723083595260 0.0491970468967403 1 2.88293742616074 22.2916051040867 -0.167784067918332 0.0398484160432707
AT3G55040_at 9.81091464114967 9.71484939886638 9.81243015359419 9.7237088599024 10.0260441907152 9.60121996226546 10.4971000914350 10.4256410607936 10.3505353966394 10.3204261328053 10.0943010944642 10.0198692715256 10.1893791712776 10.2613611730591 10.2059394555760 10.5243294974423 10.2010634317994 10.1785102079727 10.1841117154425 0.0841817067366528 0.084113835240491 0.0897468746328443 0.0902056001636272 0.0905821961340859 0.0861386121549475 0.0936438522525384 0.0871824769515873 0.0880980871829 0.0877912998196125 0.0886424111981219 0.0877955919025663 0.0845091378402093 0.0847106564916671 0.0877287472811748 0.0878630179597041 0.0856460656350327 0.088365834159085 0.0847557384704563 3 0|3 /|- 20409696 20410286 20409995.667 20409515 20411323 - gene protein_coding_gene FALSE TRUE AT3G55040.1 In2-1 protein, putative similar to In2-1 protein, putative [Arabidopsis thaliana] (TAIR:AT5G02790.1); similar to Os03g0283100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049751.1); similar to IN2-1 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95327.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.198477879257324 -2.29658241690115 0.0492478682334824 1 2.88201328336013 20.1986728337662 -0.198477879257324 0.0779095895957414
AT1G13170_at 4.65084373702714 4.42938839995141 4.21668384615573 4.20684866720257 4.2960400416758 4.41071375563292 4.23851729398318 4.44268261889904 4.67107617944889 4.88477874301566 5.60779565731228 5.86308075021884 4.84389477259826 4.93324124381258 5.59906855444363 4.9835880295372 5.00491068791481 5.38988502513421 4.7326715773815 0.201443468946447 0.201443468946447 0.207801904907578 0.209838584422789 0.216558826218011 0.207232090265418 0.220018724306866 0.206536615526825 0.211404806915982 0.207004416763698 0.203217000614763 0.205458076922439 0.203009875138949 0.202032992871307 0.213228179553326 0.204611542255043 0.201443468946447 0.203318387202461 0.21204898063041 1 1|0 -|/ 4488847 4489567 4489286.667 4488622 4492578 - gene protein_coding_gene FALSE TRUE AT1G13170.1 oxysterol-binding family protein similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22540.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.178777244353843 2.29633212065093 0.0492674996995573 1 2.88165656569178 9.38197742343439 0.178777244353843 0.0558011369265962
AT4G10300_at 10.4794576375430 10.4232209819128 10.3668938932898 10.3708816510295 10.5125183563674 10.3341240770361 11.1032815015845 10.8966134620567 10.6918994198813 10.7904589641362 10.7098235890535 10.6713181297097 10.5453441015324 10.6907781582181 10.7411019113195 10.8073270697863 10.6937899641568 10.6668730574111 10.6402491534843 0.0781629469668978 0.0737820445821797 0.0790382553055005 0.0762537698799902 0.0747171346508766 0.0775741642850521 0.0767679262105621 0.0789359026088222 0.082558439678402 0.0760441453825092 0.078873817285486 0.0772186034995795 0.0737820445821797 0.0771590252319898 0.0773895391367998 0.0742897920379545 0.082272976691444 0.0744773891473755 0.0770305444436261 4 4|0 +|/ 6384560 6385885 6385121.8 6384458 6386185 + gene protein_coding_gene FALSE TRUE AT4G10300.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04300.1); similar to Os04g0445200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052900.1); similar to Cupin, RmlC-type [Medicago truncatula] (GB:ABE82642.1); similar to OSIGBa0140O07.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67236.1); contains InterPro domain Protein of unknown function DUF861, cupin_3; (InterPro:IPR008579); contains InterPro domain AraC protein, arabinose-binding/dimerisation; (InterPro:IPR003313) -0.173140124764538 -2.29598663569235 0.0492946098400991 1 2.88116419662117 21.2600391168437 -0.173140124764538 0.0482430533306258
AT3G06500_at 9.40871107923826 9.4586348145171 9.62632168374794 9.45356799820546 10.0573712938582 9.79896813497375 9.28920565996055 9.2147841156241 8.95428364146832 9.31045831412832 9.10959359943993 8.90947303714395 8.65165755473866 9.26436564301988 8.51474221055253 8.77009419523541 9.30141944990167 9.37368586237895 8.79634734555108 0.109301682482485 0.107069191531032 0.106721737154114 0.106850815588381 0.112726094074900 0.109903003901896 0.109505535793617 0.110019809463658 0.120505512752344 0.107911021561483 0.105506515617351 0.106386078365343 0.11381105550355 0.106806502194163 0.117395366939436 0.109439400983043 0.111582008060713 0.112991472116107 0.108385714106292 3 3|0 +|/ 2014745 2015441 2015140.444 2012085 2015711 + gene protein_coding_gene FALSE TRUE AT3G06500.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G56560.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT5G22510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G05820.1); similar to invertase [Oryza sativa (indica cultivar-group)] (GB:AAO25633.1); similar to neutral invertase [Daucus carota] (GB:CAA76145.1); similar to Plant neutral invertase; Glycoside transferase, six-hairpin [Medicago truncatula] (GB:ABE94613.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) 0.178869602015065 2.29569806971314 0.0493172648937727 1 2.88075295456263 18.5420666197326 0.178869602015065 0.055981772539265
AT4G22590_at 5.51584611404956 5.54526413029093 4.99702520822357 5.10050025263847 4.36366373624551 4.42044906200023 4.55307051961082 4.76131277284705 4.78986970907079 3.98921182241454 4.54264454276858 5.17272775614539 4.23901086252087 4.46953905001825 4.19318135107849 4.126280934025 4.20736260139020 4.3693120684396 4.35841903603734 0.212350153482038 0.210465885204784 0.220957164298716 0.205931624615305 0.208754910303101 0.213653554072568 0.210522271073545 0.204359760250516 0.214108569044762 0.205972830557021 0.204359760250516 0.211333790718041 0.211425820634275 0.205156359189636 0.205750531819575 0.20584097559711 0.207201722122169 0.211763117053068 0.206223226318674 4 4|0 -|/ 11893894 11894541 11894201.5 11893510 11896491 - gene protein_coding_gene FALSE TRUE AT4G22590.1 trehalose-6-phosphate phosphatase, putative similar to trehalose-6-phosphate phosphatase, putative [Arabidopsis thaliana] (TAIR:AT4G12430.1); similar to trehalose-phosphate phosphatase [Nicotiana tabacum] (GB:AAU03490.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379) -0.168811639732617 -2.29558060317839 0.0493264900408819 1 2.88058555256281 9.30422860030786 -0.168811639732617 0.0417352147013193
AT3G26400_at 5.51398613662426 5.886613339224 5.48908370631608 5.73583287830729 5.26215177963045 5.17281569694486 5.32206222111954 5.61189884456863 5.36432745894761 4.99829472201931 4.68982607617785 4.99364120686765 5.19507451281119 5.13900520906591 4.45520368511553 5.09728876792525 4.69713785010887 5.23443728720168 5.23189382807851 0.215527162131587 0.214571308596272 0.22085111069902 0.220020473961908 0.212473224256711 0.221296227697172 0.223140711240465 0.216321661374317 0.212473224256711 0.230599782091065 0.218182777318666 0.219025911935418 0.220261123655705 0.215811129162645 0.221285315431999 0.220355658375202 0.223120410374441 0.212473224256711 0.212473224256711 3 3|0 +|/ 9668902 9670106 9669861.5 9667853 9670399 + gene protein_coding_gene FALSE TRUE AT3G26400.1 EIF4B1 (eukaryotic translation initiation factor 4B1) member of eIF4B - eukaryotic initiation factor 4B similar to eukaryotic translation initiation factor, putative (EIF4B5) [Arabidopsis thaliana] (TAIR:AT1G13020.1); similar to Os02g0595800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047316.1); similar to Os04g0480100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053098.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC28254.1); contains InterPro domain Plant specific eukaryotic initiation factor 4B; (InterPro:IPR010433) -0.214569649345169 -2.29530628154416 0.0493480403497247 1 2.88019462091051 10.5672424890541 -0.214569649345169 0.0934691276532105
AT1G55900_at 6.34522305231438 6.60282865418438 6.3244828476251 6.63746572582446 5.89881542921093 5.97846167316382 6.72411234652237 6.64462219245883 4.07060906074631 5.28632645747841 4.58485495083989 5.12054407804746 4.34557072271919 4.66591791646645 5.57201004652476 4.41324023206356 4.80471881075469 4.91265100560586 5.10268055553552 0.215956576253118 0.217527144556329 0.219851847285569 0.230917464984909 0.221997936347846 0.232229992283718 0.220244287664624 0.227048447204621 0.229664965362440 0.233387825482064 0.236700863100676 0.218059196896179 0.218156216978686 0.221099065313552 0.219532040883108 0.220695131002496 0.220450282405584 0.226645394642973 0.215546347624640 1 1|0 +|/ 20907979 20909059 20908532.2 20906733 20909393 + gene protein_coding_gene FALSE TRUE AT1G55900.1 TIM50 (EMBRYO DEFECTIVE 1860) component of a translocase in the mitochondrial inner membrane Identical to Import inner membrane translocase subunit TIM50, mitochondrial precursor (TIM50) [Arabidopsis Thaliana] (GB:Q8VYE2;GB:Q56X01;GB:Q9LG22); similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to Os05g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056025.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAV59298.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.193411848311462 -2.29498692466274 0.0493731403201337 1 2.87973951927472 11.2056567376453 -0.193411848311462 0.072802584709198
AT1G56070_at 11.9894327049953 12.262962257557 11.8093636225383 12.1309839164581 11.8196561039089 11.5911270269776 12.1019740067863 12.3775444865193 11.8245731813414 12.0472297267340 11.9472915749487 12.0976209340264 11.9886712094485 11.8141691610387 12.0491518554427 11.6792851008778 11.6451697692547 11.4336247571876 11.89077118516 0.0732196653476482 0.0725480982594585 0.0753276259958791 0.0725480982594585 0.0732783844703501 0.0818446525171992 0.0776506727872272 0.075347467335378 0.0865959572677703 0.0748015298704782 0.0725480982594585 0.0725480982594585 0.0725480982594585 0.0729165925550751 0.07459877671157 0.0725480982594585 0.0836881251185808 0.0778045114066693 0.0725480982594585 1 1 - 20971928 20972412 20972113.091 20971595 20975407 - gene protein_coding_gene FALSE TRUE AT1G56070.1 LOS1 (Low expression of osmotically responsive genes 1); translation elongation factor/ translation factor, nucleic acid binding encodes a translation elongation factor 2-like protein that is involved in cold-induced translation. Mutations in this gene specifically blocks low temperature-induced transcription of cold-responsive genes but induces the expression of CBF genes and mutants carrying the recessive mutations fail to acclimate to cold and is freezing sensitive. similar to MEE5 (maternal effect embryo arrest 5), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G06220.1); similar to Elongation factor 2 (EF-2) (GB:O23755); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE88775.1); similar to Translation factor; Elongation factor G, III and V [Medicago truncatula] (GB:ABE88774.1); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Elongation factor G, domain IV; (InterPro:IPR005517); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.217090341147031 -2.29490491647234 0.0493795878256885 1 2.87962265453699 23.8867460538959 -0.217090341147031 0.0957951993746954
AT1G70770_at 8.55682122745766 8.92330833038176 8.7615656966183 8.94821983632517 9.14508424997816 8.56590780116618 8.39074254057488 8.65947026449015 8.02684871599339 7.66494334234146 8.20674693671891 8.18564221078945 8.11413974175655 8.28889486902285 8.04931652272558 7.93305246256514 7.76305513641198 8.05447314356684 7.64166705303774 0.164025250238833 0.169419130824997 0.1715028590683 0.166230343089406 0.165540630778704 0.163511064429847 0.163182912315093 0.16211616840825 0.175972738312444 0.170812914964751 0.165630810557117 0.164977262787545 0.164688590927253 0.165955034749160 0.173639609565360 0.166300608652649 0.182072514347472 0.164788144783695 0.173935181782006 1 1 - 26692290 26693025 26692577.182 26691892 26694939 - gene protein_coding_gene FALSE TRUE AT1G70770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23170.1); similar to Os01g0128400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041912.1); similar to hypothetical protein [Platanus x acerifolia] (GB:CAL07978.1); contains domain FAMILY NOT NAMED (PTHR13448); contains domain gb def: Hypothetical protein F5A18.5 (F15H11.2 protein) (Hypothetical protein At1g70770) (PTHR13448:SF2) 0.259602114724822 2.29414314911732 0.049439518073827 1 2.87853713839582 16.6700074092418 0.259602114724822 0.131431857134313
AT1G23490_at 10.8494293250102 10.7725406442414 10.5535589765477 10.4590683854996 10.4152544830047 10.4706261662193 10.6194528548139 10.5354573291582 10.6877689069351 10.562615500281 11.4053376735722 11.4327039066992 11.1503101983670 10.9618027486154 11.2743200620668 10.9976044894474 10.7668285510756 10.6764455137980 10.3736415937574 0.0867821783210844 0.084188879227815 0.0857384707054266 0.084720591505443 0.0849205650282026 0.0848353267775943 0.0855841580816274 0.0849603911285688 0.0906717266906011 0.084188879227815 0.0853293349801242 0.084188879227815 0.0858348816032511 0.0883436441806196 0.0863246661476365 0.084188879227815 0.0869425358458299 0.0865001230333479 0.089158425284912 1 1|0 +|/ 8337221 8338224 8337856.25 8336690 8338661 + gene protein_coding_gene FALSE TRUE AT1G23490.1 ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. A member of ARF GTPase family. Arabidopsis has 21 known members, known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G70490.2); similar to ADP-ribosylation factor [Gossypium hirsutum] (GB:CAD12855.1); similar to ADP ribosylation factor 002 [Daucus carota] (GB:ABB03801.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.161117053571306 2.29366313113154 0.0494773193798673 1 2.8778531428687 21.3966790922017 0.161117053571306 0.0273413294443177
AT4G21470_at 8.65901761772204 8.86663773331602 9.25621425027236 9.25284412467238 9.3293977300832 8.8857071071757 9.12436414805532 8.9551239258449 7.8636508244261 8.52969160604894 8.16602171564345 8.33026133111668 8.47836761015984 8.54508026129735 8.10077562701145 8.62360936644393 8.42041683533581 8.33947997722498 8.31051330163196 0.160938048127075 0.157303997400111 0.162675198838978 0.151781463295726 0.156151387767804 0.166035418490641 0.157464016459750 0.159636706737755 0.183152970584481 0.157688890296605 0.162050140031434 0.152517657532809 0.157772715669880 0.156149284964782 0.166911629245409 0.151495413815284 0.163640809136567 0.157843329149752 0.162059376062218 4 4|0 +|/ 11431735 11433154 11432443.111 11431116 11433333 + gene protein_coding_gene FALSE TRUE AT4G21470.1 ATFMN/FHY (RIBOFLAVIN KINASE/FMN HYDROLASE); FMN adenylyltransferase/ riboflavin kinase Bifunctional enzyme that catalyzes hydrolysis of FMN to riboflavin, and phosphorylation of riboflavin to FMN. similar to GS1 (GLYCEROL-3-PHOSPHATASE 2), hydrolase [Arabidopsis thaliana] (TAIR:AT5G57440.1); similar to GPP1 (GLYCEROL-3-PHOSPHATASE 1), hydrolase [Arabidopsis thaliana] (TAIR:AT4G25840.1); similar to HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66125.1); similar to Os10g0464400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064794.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Riboflavin kinase / FAD synthetase; (InterPro:IPR002606); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) 0.210318979988263 2.29348593583577 0.0494912807071226 1 2.87760065628657 17.3462234135918 0.210318979988263 0.08969192869264
AT3G05030_at 7.63329685097462 7.66349583527599 8.75033495837542 8.4918713083777 8.73888884668161 8.63374845030732 9.45680653438395 9.30254092938719 8.4541617616185 9.0439332976969 8.98789049927574 8.51311705096463 9.0722964727698 8.94204455034173 8.68382520679988 8.8813416391995 9.26354504486845 8.95996445069743 8.5912747307399 0.105046248946471 0.100794151023899 0.100334771974451 0.10171478119814 0.0993836252929955 0.0998770096633893 0.0972064377980053 0.101391278856629 0.101183452297301 0.100659862223707 0.0963438611071093 0.0976026798543632 0.0985600247190848 0.103965452007395 0.103972908627472 0.0959406807121584 0.102152364154003 0.106672561141381 0.103573592585332 3 3 - 1393544 1394429 1393888.273 1393302 1396790 - gene protein_coding_gene FALSE TRUE AT3G05030.1|AT3G05030.2 NHX2 (sodium proton exchanger 2); sodium:hydrogen antiporter|NHX2 (sodium proton exchanger 2) member of Sodium proton exchanger family Identical to Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2) (NHX2) [Arabidopsis Thaliana] (GB:Q56XP4;GB:Q9CAW6); similar to NHX4 (sodium proton exchanger 4), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT3G06370.1); similar to NHX1 (NA+/H+ EXCHANGER), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G27150.1); similar to sodium proton exchanger [Thellun (GB:ABF48496.1); similar to Na+/H+ vacuolar antiporter [Brassica napus] (GB:AAO38856.1); similar to Na+/H+ antiporter [Thellun (GB:ABJ97691.1); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153)|Identical to Sodium/hydrogen exchanger 2 (Na(+)/H(+) exchanger 2) (NHE-2) (NHX2) [Arabidopsis Thaliana] (GB:Q56XP4;GB:Q9CAW6); similar to NHX1 (NA+/H+ EXCHANGER), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G27150.1); similar to sodium proton exchanger [Thellun (GB:ABF48496.1); similar to Na+/H+ vacuolar antiporter [Brassica napus] (GB:AAO38856.1); similar to Na+/H+ antiporter [Thellun (GB:ABJ97691.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.178111185554812 2.29156774641546 0.049642666186978 1 2.87486761122556 17.3886028197454 0.178111185554812 0.0554228511711305
AT2G37920_at 7.58975640482454 7.82066584711566 7.47261716092769 7.43349281402252 8.05977690234504 7.59923428302769 7.3065411865638 7.02171703266585 7.40762796211736 6.85880521545357 7.52288780352639 7.74285875597389 7.20724293995608 7.43463746081548 7.48657812438868 7.6229028193602 7.2900608786374 6.71824985476681 7.14523057071631 0.218064178339668 0.217626808831651 0.207212262896786 0.215282203279781 0.205905234696671 0.228044599405159 0.205905234696671 0.224553615498819 0.217902127784194 0.216263101469250 0.215064521517127 0.211265936568036 0.216306676275755 0.21433390745099 0.211531572371719 0.210137035593422 0.233569442244648 0.218571676869849 0.220884512039658 2 2 - 15876400 15876910 15876700.273 15875658 15877149 - gene protein_coding_gene FALSE TRUE AT2G37920.1 EMB1513 (EMBRYO DEFECTIVE 1513); copper ion transporter similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G07750.1); similar to Os02g0564300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047159.1); similar to Os02g0826100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048584.1) 0.223783126268653 2.29083949918202 0.0497002603176939 1 2.87383009452293 14.7956744934902 0.223783126268653 0.102098466067743
AT2G01670_at 10.2210106324764 10.556190880584 10.5584770175373 10.7297659684435 11.0766820302424 10.7393923189670 10.2509567190167 9.99386715393791 9.85976259463534 9.70861715586686 9.69745767986183 9.96349337728218 9.77358529464508 9.8114706820507 9.81615525611593 9.99313747863117 9.38150140989693 9.7111954710503 9.98350724246758 0.108932046525200 0.109810071154834 0.111154915515246 0.111793417375064 0.110576584674548 0.114808190373789 0.112546794899029 0.108742122022660 0.125531562814407 0.111002330688299 0.110062438992049 0.109464321600532 0.111246890104710 0.112081882275421 0.113501984619096 0.108342104672166 0.112520872332408 0.112828516525568 0.109330202355859 2 2|0 -|/ 296942 297780 297441.429 296509 298093 - gene protein_coding_gene FALSE TRUE AT2G01670.1 ATNUDT17 (Arabidopsis thaliana Nudix hydrolase homolog 17); hydrolase Identical to Nudix hydrolase 17, mitochondrial precursor (EC 3.6.1.-) (AtNUDT17) (NUDT17) [Arabidopsis Thaliana] (GB:Q9ZU95;GB:Q8L979); similar to ATNUDT18 (Arabidopsis thaliana Nudix hydrolase homolog 18), hydrolase [Arabidopsis thaliana] (TAIR:AT1G14860.1); similar to MutT-like protein [Cucumis sativus] (GB:AAP57672.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.219221785414486 2.29000411002986 0.0497664094173297 1 2.87263999872786 20.3253571295748 0.219221785414486 0.0981305547542551
AT2G25010_at 6.06074651193015 6.15617565457691 6.37364986658455 6.21626752753591 6.53067270990042 6.24965028801999 5.60953834620136 5.90422118966633 5.33742161730777 5.61752502891922 5.54468622937352 5.5477126978279 5.66714353281897 5.6119235758328 5.63044599142076 5.71615448661931 5.72730239884537 5.56533553249567 5.96975479510798 0.221407346862053 0.215381058550242 0.221509349493242 0.217673995030835 0.224644105032509 0.218002017634558 0.217529173883153 0.212461711309125 0.234094552982667 0.211878595021113 0.211878595021113 0.213145536755945 0.216618451066415 0.221909135131167 0.211878595021113 0.217707178741159 0.220885846263787 0.222029007981402 0.214751999352233 2 2 + 10639973 10640583 10640289.5 10638610 10640738 + gene protein_coding_gene FALSE TRUE AT2G25010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G17930.1); similar to Os07g0507600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059740.1); similar to H0124B04.19 [Oryza sativa (indica cultivar-group)] (GB:CAJ86302.1); similar to putative polyprotein [Oryza sativa (japonica cultivar-group)] (GB:AAV25047.1); contains InterPro domain Protein of unknown function DUF1723; (InterPro:IPR013541) 0.197330290479581 2.28985991523037 0.0497778361026269 1 2.87243458562355 11.7715678631849 0.197330290479581 0.0773319123103138
AT3G02770_at 8.81794311699787 9.06007630120482 9.07960381555714 9.10269047675057 8.82988355015097 8.64465691445436 8.10956693346535 8.13321054391443 8.5852142386051 8.1821826388518 8.44953025045262 8.26095181485469 8.3231091961963 8.51154031826623 8.14621549158093 8.53189589211623 8.33053155769884 8.16840265741265 8.3490516941865 0.158554652324449 0.150113918267232 0.152689012773379 0.154182581353793 0.149970561348284 0.162695308643545 0.153706191847331 0.156975669169503 0.167202145939027 0.166556722499251 0.148682719132276 0.158596395430305 0.149790667128039 0.154185547045640 0.149056334470643 0.145540667775438 0.155187440216873 0.159179280193025 0.149786883256581 3 3 - 601043 601856 601395.091 600900 602266 - gene protein_coding_gene FALSE TRUE AT3G02770.1 dimethylmenaquinone methyltransferase family protein Identical to Regulator of ribonuclease-like protein 1 [Arabidopsis Thaliana] (GB:Q9M8R9); similar to dimethylmenaquinone methyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G16450.2); similar to Dimethylmenaquinone methyltransferase [Medicago truncatula] (GB:ABE89807.1); contains InterPro domain Protein of unknown function 1935; (InterPro:IPR010203); contains InterPro domain Dimethylmenaquinone methyltransferase; (InterPro:IPR005493) 0.176066044386913 2.28843761119259 0.0498906856503232 1 2.87040854721575 17.0784147921637 0.176066044386913 0.0530658517938446
AT3G23580_at 7.96142555102649 8.59417863440154 9.06685147869523 8.81008157112663 8.85248382146125 8.63806116403287 9.47826291041344 9.4304660997154 7.74678441054436 8.28763594400223 7.01760264550655 7.06725370182057 8.00520066887221 7.39551042230886 7.03521597533147 8.02071972795012 8.39130039626276 7.56331794229984 8.0778681186982 0.202323374330059 0.193544163041361 0.193544163041361 0.200357428175281 0.19743742980779 0.193544163041361 0.193544163041361 0.20113730353072 0.208328252800111 0.208078811918111 0.202927921080381 0.203186792888413 0.199596922698631 0.207908857829187 0.210719860012476 0.194356899383701 0.205674842149550 0.193544163041361 0.201527506692278 3 3|0 +|/ 8461486 8462512 8461900.667 8460052 8462822 + gene protein_coding_gene FALSE TRUE AT3G23580.1 RNR2/RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development. Identical to Ribonucleoside-diphosphate reductase small chain A (EC 1.17.4.1) (Ribonucleotide reductase small subunit A) (Ribonucleoside-diphosphate reductase R2A subunit) (Protein R2at) (AtRNR2) (RNR2A) [Arabidopsis Thaliana] (GB:P50651;GB:Q9LUH0); similar to TSO2 (TSO2), ribonucleoside-diphosphate reductase [Arabidopsis thaliana] (TAIR:AT3G27060.1); similar to ribonucleotide reductase small subunit [Glycine max] (GB:AAD32302.1); contains InterPro domain Ribonucleotide reductase; (InterPro:IPR000358); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) -0.249814048048887 -2.28839350290540 0.0498941893735314 1 2.87034571916931 16.6536987419219 -0.249814048048887 0.124138089928249
AT2G47170_at 11.6235139418447 11.5624578355086 11.8450503505460 11.7759514589999 11.7250721668150 11.6148355968397 11.6795027090816 11.8123305430988 11.6046562460775 11.4318538490041 11.8226113129048 11.7666590624892 11.7016633297615 11.7498052317179 11.6774948058982 11.6231719437711 11.6311023186487 11.6885532318706 11.3159940125635 0.073510903139707 0.0691776679849804 0.0724464980434781 0.0734914826118734 0.0682143190317934 0.0713801272115232 0.0698597525569333 0.0691055214034802 0.0777028855212866 0.070084318763678 0.0700961036453584 0.0682143190317934 0.0692043963767878 0.0692318724538907 0.0726976938994106 0.0682143190317934 0.0765312385315099 0.0725677652321048 0.0684864919268662 2 2|0 +|/ 19374354 19375427 19374876.556 19373693 19375910 + gene protein_coding_gene FALSE TRUE AT2G47170.1 ARF1A1c (ADP-RIBOSYLATION FACTOR 1); GTP binding / phospholipase activator/ protein binding Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. Members of this family are known to be essential for vesicle coating and uncoating and functions in GTP-binding. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ADP-ribosylation factor, putative [Arabidopsis thaliana] (TAIR:AT1G10630.1); similar to ATARFA1E (ADP-ribosylation factor A1E), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT3G62290.1); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806) 0.163787044000549 2.28799201345399 0.0499260927294511 1 2.86977384452361 23.2840730039323 0.163787044000549 0.0338665102180407
AT1G60940_at 8.48730459653894 8.97461614788948 8.86387020296398 8.86940786111314 8.84211903453685 8.80449806345244 9.03741175711894 9.02785926186028 9.20920049599908 9.34979818532747 9.0996061023769 8.93040619882909 9.00164440859379 8.77293863494874 8.69397221034439 9.00195533375583 8.95368533209956 8.80279835590332 9.27849241156657 0.126036519011346 0.127867924532998 0.126806579457686 0.126459075920933 0.123933892121751 0.128512198340685 0.128184864561474 0.133375973607910 0.132136416886957 0.130353138194999 0.129864992557905 0.131314426995861 0.123371365562787 0.136007543998942 0.128740386102980 0.127348564558912 0.133581392014452 0.129766631559321 0.125896562306957 1 1 - 22443064 22444272 22443417.636 22442804 22445882 - gene protein_coding_gene FALSE TRUE AT1G60940.1|AT1G60940.2 SNRK2-10/SNRK2.10/SRK2B (SNF1-RELATED PROTEIN KINASE 2.10, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10); kinase encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. similar to ASK1 (ARABIDOPSIS SERINE/THREONINE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G10940.1); similar to serine/threonine protein kinase (GB:AAA33003.1); similar to serine/threonine protein kinase (GB:AAA33004.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.204431012929944 -2.28745696894291 0.049968640119002 1 2.86901176094459 17.956530625553 -0.204431012929944 0.0846040519945627
AT1G43790_at 4.09707381159311 4.72172261254147 3.47551078670957 3.61860246221269 3.68722168869364 3.76540380229703 4.16857221610788 4.08607385800949 5.54205993831933 4.03416685026571 5.55267675684747 6.65523143086083 5.44443745692171 6.03043897619657 6.6746665796082 5.50557166915756 5.16902335599145 6.29470548327511 4.86204327743758 0.2314285537085 0.2314285537085 0.235598390765963 0.241444722268628 0.239344736372358 0.237829519466809 0.231715196666803 0.233008579623449 0.242818901204658 0.2314285537085 0.237394892192023 0.2314285537085 0.232798995940900 0.235240399412067 0.239604372012644 0.236710305734799 0.24290494079076 0.233798976229663 0.231884552006684 1 1 + 16578393 16578712 16578519.091 16578335 16578857 + gene protein_coding_gene FALSE TRUE AT1G43790.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT5G48920.1) 0.235705667674202 2.28727893813630 0.0499828053082119 1 2.86875819135514 9.3168229809114 0.235705667674202 0.112629178175375
AT3G53180_at 7.83969215575687 8.04009538963464 7.71642698214162 7.80391365814486 8.313348909016 7.58438537675058 8.70449651158083 8.45081404675991 8.12566211032395 8.257500629121 7.90761188031331 7.95707737494031 8.12024283982664 7.99210861843596 7.4467513018164 8.02050804219483 8.08818189104165 8.100278141589 7.87517849151997 0.153114614343667 0.159938087289787 0.167487633490605 0.151511013766703 0.154604607190029 0.159626067260903 0.158685716840456 0.157460590622572 0.157444791786164 0.146783281636769 0.151091519780580 0.153930532023187 0.152767995854657 0.156482091731769 0.156693548177385 0.154181779359039 0.157466470516191 0.150928667443035 0.153651888318352 3 3|0 +|/ 19721350 19722142 19721685.556 19717872 19722417 + gene protein_coding_gene FALSE TRUE AT3G53180.1 glutamate-ammonia ligase similar to glutamine synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47747.2); similar to glutamine synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66111.1); similar to glutamine synthetase [Saccharum officinarum] (GB:AAW21277.1); contains InterPro domain Amidohydrolase 2; (InterPro:IPR006992); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) -0.268137263402504 -2.28611590583478 0.0500754409972364 1 2.8671017592069 16.0767510061855 -0.268137263402504 0.138828027872396
AT2G44060_at 9.72334524778478 9.9003215614566 9.7742533134132 9.893026345632 9.66694900401418 9.45642869439921 10.4487272953577 10.4183946294034 10.2005154374974 10.5162025247428 10.5698797163001 10.5298647897358 10.2054817306492 10.4951501482095 10.5142143016823 10.3150614470635 9.97188003564677 10.3240260965655 10.1556950148155 0.0828233906093028 0.0815445935465564 0.0828708820663892 0.0822920306906073 0.0800517313687628 0.0911150791196761 0.0792527579908015 0.0856171552467467 0.0858207742839355 0.0838225028761034 0.0817042680461361 0.0819393275088941 0.080945701143778 0.0858818304717713 0.0833691004350249 0.0817874082359346 0.093478443083042 0.082218148342275 0.0832294137942492 2 2 + 18234437 18234893 18234653 18233393 18235227 + gene protein_coding_gene FALSE TRUE AT2G44060.1|AT2G44060.2 late embryogenesis abundant family protein / LEA family protein similar to LEA14 (LATE EMBRYOGENESIS ABUNDANT 14) [Arabidopsis thaliana] (TAIR:AT1G01470.1); similar to Os03g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051862.1); similar to salt tolerance protein [Sesuvium portulacastrum] (GB:AAV71142.1); contains InterPro domain Late embryogenesis abundant protein 2; (InterPro:IPR004864) -0.175071193294808 -2.28478208580903 0.050181889324647 1 2.865202249551 20.2384303158911 -0.175071193294808 0.0521082852379143
AT1G32550_at 9.76999568162328 9.5892584599885 9.04151370428051 9.12451782158376 9.64597748782809 9.3003038745813 10.0042810003529 9.67665887812635 9.88849417026663 9.92971323431114 9.82363291506648 10.1643005721733 9.8124207154316 9.9519303524993 10.3213315470308 9.93111120189579 9.56051882184122 9.90245182765752 9.79094275870803 0.122682979220503 0.120313970385273 0.125935720738543 0.120743637116708 0.123377640863705 0.131274594252071 0.122998743872512 0.122374709309598 0.130366688158743 0.123739277320948 0.122868391794141 0.118196095485933 0.115629163815039 0.118505352044715 0.120092626858675 0.115198446146939 0.131900618646046 0.118551869658681 0.119531079604204 1 1|0 -|/ 11771964 11774073 11773290.4 11771746 11774167 - gene protein_coding_gene FALSE TRUE AT1G32550.1 ferredoxin family protein similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to Os03g0685000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050923.1); similar to putative ferredoxin [Chlamydomonas reinhardtii] (GB:ABC88605.1); similar to COG0633: Ferredoxin [Nostoc punctiforme PCC 73102] (GB:ZP_00109422.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.209112379925047 -2.28467005311561 0.0501908405271927 1 2.86504271042461 19.4206528461930 -0.209112379925047 0.0893173543608702
AT1G64900_at 9.68151403637954 9.80800426946857 9.89757949089564 10.0447748901285 9.43035976394157 9.46655203805313 10.1873537119593 10.3622248564887 9.51067942579975 9.92436336317006 9.52455819659085 9.44522480774464 9.550289100012 9.5717136210017 9.38271678512898 9.85266075757006 9.83738533729075 9.67716377068456 9.50342492163894 0.090092115315538 0.0913939092661587 0.0964006352999524 0.0912789533010445 0.0918854662020051 0.0918530747096963 0.0915397536753654 0.0946223882359837 0.106361212976158 0.0916933762652387 0.0925431435053526 0.0911852826332141 0.0879408913043232 0.0934953717928534 0.0941139009149019 0.0886165176467213 0.0928972411302678 0.0942970757760684 0.0879408913043232 1 1 + 24117890 24118397 24118177.364 24116878 24118647 + gene protein_coding_gene FALSE TRUE AT1G64900.1 CYP89A2 (CYTOCHROME P450 89A2); oxygen binding Encodes cytochrome P450 (CYP89A2). Identical to Cytochrome P450 89A2 (EC 1.14.-.-) (CYPLXXXIX) (ATH 6-1) (CYP89A2) [Arabidopsis Thaliana] (GB:Q42602;GB:Q9XIQ6); similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.17044976467631 -2.28379625792146 0.0502607094143634 1 2.8637984331938 19.4854803574340 -0.17044976467631 0.0456405429843868
AT3G21060_at 5.53756825843573 5.80264472503894 5.10613936170190 5.39295231783978 5.95576333714698 5.60904504873648 5.66998106183895 5.79931654930655 4.11435909880781 4.77296063134412 5.22957843985228 5.09548328061379 4.98435967273845 5.10366605288406 5.39334494264479 5.07340070166203 5.38527653825948 4.90727757091115 4.71456950236234 0.251698849332773 0.249855469698641 0.258160808833879 0.255725795351931 0.248979763809888 0.268822816192371 0.248979763809888 0.256458859813612 0.25669560907211 0.254456250729286 0.258726151037958 0.253956912248303 0.254426410866211 0.254188876697506 0.254483410960389 0.25074709125561 0.259196266148920 0.265242884188255 0.24915027291767 3 3 + 7378913 7379539 7379186 7377440 7380219 + gene protein_coding_gene FALSE TRUE AT3G21060.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to hypothetical protein MtrDRAFT_AC147431g31v2 [Medicago truncatula] (GB:ABE88086.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.213091345071119 2.28369667406264 0.050268678277172 1 2.86365663141036 10.4494320712309 0.213091345071119 0.0931073405391098
AT3G05490_at 4.71108378024791 5.24981308109564 4.5289319980845 5.10413456752449 5.41834933950653 5.41053640410129 5.91670251474012 6.70015823568926 6.84399762191 5.44649461466012 8.93517868310548 7.32084762687075 7.19817176936615 8.2308285313649 7.35359473190415 6.66142258605842 5.83983034629687 6.82724736511471 5.97106351526119 0.203515672114404 0.204347476184093 0.203593347583496 0.202289859132808 0.206073929554816 0.206886965921058 0.207194424621769 0.201697456249730 0.207355586625575 0.204272549728516 0.205538733308980 0.205154700199802 0.201697456249730 0.206508475280992 0.205200534448455 0.206262588010152 0.216776079785498 0.201697456249730 0.202190458060487 3 3 + 1591412 1591701 1591558.727 1591283 1591989 + gene protein_coding_gene FALSE TRUE AT3G05490.1 RALFL22 (RALF-LIKE 22) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to RALF precursor [Nicotiana tabacum] (GB:AAL26478.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.339876814380355 2.281547303169 0.05044097970216 1 2.86059628998064 12.0715014679340 0.339876814380355 0.192312803917897
AT2G39360_at 5.57470556285637 6.14070022001288 5.6864751620374 5.93910700259306 5.54184313930769 5.43481877322681 5.14604109854857 5.43951969728979 6.55473954585919 5.53398678943114 6.0355948185432 5.81022665062507 5.46007686058507 5.71710218197903 5.05090040888084 5.07316311498564 4.18047864177117 5.30768209406913 5.58878053900374 0.222235290724814 0.214252764474869 0.221613948912416 0.221207664119643 0.216720327916049 0.232656322644511 0.213770175521683 0.216023678755659 0.223825133908170 0.217147725307398 0.213018371722443 0.215590941246086 0.215708819285297 0.223796471211795 0.219424268245348 0.213913803882667 0.224600988303379 0.219139027500875 0.214926028829267 2 2 - 16444696 16445191 16444907.091 16444550 16447232 - gene protein_coding_gene FALSE TRUE AT2G39360.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G46290.1); similar to receptor-like protein kinase [Catharanthus roseus] (GB:CAA97692.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT07653.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.24388991019356 -2.27932761883401 0.0506195314865266 1 2.85743632034867 11.2238540259147 -0.24388991019356 0.12011498472095
AT2G43100_at 10.0135319916401 10.3304351532590 9.84074020384283 9.91810751658212 10.2300714580217 10.2839187328792 10.4843302998489 10.9959973299019 8.76242770781817 10.6689454813854 10.6955902326850 10.0220696187162 10.5195260483406 10.7276084440398 9.97347295059853 10.1875310233982 10.5655454908759 10.8875894189480 9.38897954414967 0.109648835898893 0.107882185356181 0.115033581513133 0.111701008406688 0.110133675951791 0.110889681298182 0.112971892392922 0.108535168855995 0.128489875701931 0.107733508202388 0.107733508202388 0.109526654745442 0.109306754413037 0.112624557731177 0.108876005596246 0.107733508202388 0.121059673377157 0.111201129911818 0.115660580914035 2 2 + 17927949 17928445 17928168.364 17927737 17928766 + gene protein_coding_gene FALSE TRUE AT2G43100.1 aconitase C-terminal domain-containing protein similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43090.1); similar to putative protein [Oryza sativa] (GB:CAC39061.1); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573) 0.226359096584093 2.27831126889427 0.0507014955548016 1 2.85598959810738 20.2892170346976 0.226359096584093 0.105423673097298
AT1G79600_at 9.8808753574401 9.80207706739015 10.0056962220111 9.9056295506422 10.2326670132967 9.81917950523232 10.7670954255962 10.5630134024180 10.5533181329910 10.6447137897350 10.6003985045406 10.3117786463830 10.3313426929102 10.6207627763712 10.0444399834073 10.7260632873704 10.3959159167413 10.3153664183234 10.4798562762669 0.102130781326032 0.102155725461398 0.105044319638792 0.113238157289301 0.0999607668768513 0.107710330870068 0.103288271951138 0.103777746277975 0.111493394302091 0.107394352428358 0.098472501088379 0.0992535456073487 0.103624666910159 0.100058420010808 0.107638944426920 0.098472501088379 0.099801404508562 0.107524012554080 0.106767798804134 1 1 - 29955027 29955652 29955357.818 29954818 29957583 - gene protein_coding_gene FALSE TRUE AT1G79600.1 ABC1 family protein similar to ABC1 family protein [Arabidopsis thaliana] (TAIR:AT1G71810.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44178.1); similar to Predicted unusual protein kinase (ISS) [Ostreococcus tauri] (GB:CAL54536.1); similar to Os05g0323800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055194.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.201754889245275 -2.27828616142464 0.0507035220216748 1 2.85595386023016 20.6108064902968 -0.201754889245275 0.0827852527274032
AT1G06110_at 8.40431873605173 8.26514725160592 8.23244109693036 8.45662027865076 8.89099224827312 8.65605169870994 8.26690611375326 8.15535178725161 7.23365430078659 7.99369091040764 7.8531542898632 7.71675507561556 8.03825904178105 7.88536328352257 7.66649388623356 8.01470790239667 7.99502704099125 7.88665563850214 8.17234953231422 0.161079061533330 0.154563792198168 0.159762323061252 0.157777796084985 0.150542712553524 0.161510278155750 0.154428122849030 0.155703671203987 0.183107388983384 0.152285821128587 0.158748639854181 0.151346037855899 0.152855448197618 0.157925198724253 0.155264664313252 0.152379908838245 0.166592045303583 0.158844161542004 0.153817108959905 1 1 - 1853247 1854039 1853683.727 1853076 1855030 - gene protein_coding_gene FALSE TRUE AT1G06110.1 SKIP16 (SKP1/ASK-INTERACTING PROTEIN 16) similar to Os11g0265200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067658.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96082.1); contains InterPro domain ApaG; (InterPro:IPR007474) 0.184124565251256 2.27748747878784 0.0507680269211447 1 2.85481705176447 16.2569537852530 0.184124565251256 0.0641158624842175
AT4G34640_at 8.16871967173102 8.2255497152077 8.01713132537412 7.81076693501027 8.74516957211366 8.18330241672607 8.87330257487093 8.7543349295753 8.63806387890636 8.47006856048423 8.96606893697263 8.42989491011915 8.37524806135997 8.68416364952037 8.42723085288022 8.3553922856836 7.99062412703026 8.43835206462992 8.67983968245581 0.146961654286721 0.142553671127288 0.1557233047899 0.154921127437767 0.144106444060564 0.157738323450791 0.14251564986049 0.144249984044312 0.152912173732494 0.150868650715757 0.148087987448766 0.143872892329174 0.141714384840455 0.149230041015403 0.142647558661789 0.143482673987039 0.178193638425116 0.150884604076215 0.152515304646366 4 4|0 +|/ 16540298 16541626 16540952.889 16538287 16541931 + gene protein_coding_gene FALSE TRUE AT4G34640.1 SQS1 (SQUALENE SYNTHASE 1); farnesyl-diphosphate farnesyltransferase Encodes squalene synthase, which converts two molecules of farnesyl diphosphate (FPP) into squalene via an intermediate: presqualene diphosphate (PSPP). It is generally thought to be one of the key enzymes of sterol biosynthesis, since it catalyzes the first pathway-specific reaction of the sterol branch of the isoprenoid pathway. Identical to Squalene synthetase (EC 2.5.1.21) (SQS) (SS) (Farnesyl-diphosphate farnesyltransferase) (FPP:FPP farnesyltransferase) (SQS1) [Arabidopsis Thaliana] (GB:P53799); similar to SQS2 (SQUALENE SYNTHASE 2), farnesyl-diphosphate farnesyltransferase [Arabidopsis thaliana] (TAIR:AT4G34650.1); similar to squalene synthase [Glycine max] (GB:BAA22559.1); similar to squalene synthase [Glycyrrhiza glabra] (GB:BAA13083.1); similar to squalene synthase [Panax noto (GB:ABA29019.1); contains InterPro domain Squalene/phytoene synthase; (InterPro:IPR002060); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949); contains InterPro domain Farnesyl-diphosphate farnesyltransferase; (InterPro:IPR006449) -0.227001503398914 -2.27730730893179 0.0507825894056784 1 2.85456061515861 16.8744659267295 -0.227001503398914 0.106067674917911
AT4G24830_at 7.24178710457815 7.60782874656649 6.63980594003434 6.7643175356545 7.0391232053929 6.82570326987447 8.43350011559894 8.01848857844636 6.24615586516831 7.45811725165832 7.49376672558504 8.10535757289902 7.1281134332734 7.26766357642996 8.18483786889312 7.29785464177954 6.95991635292992 7.49782609356202 7.10074781353813 0.188270698744448 0.188505402267960 0.198583510948926 0.201428933863881 0.198205613624644 0.195610448047303 0.195402668760715 0.199120655382353 0.212918776194733 0.192866935862872 0.194140117910612 0.189809438725863 0.197307320142638 0.195686415744705 0.193694659580263 0.193935228516083 0.192230025676841 0.188270698744448 0.193592319748988 4 0|4 /|- 12793129 12793591 12793355.8 12792883 12795984 - gene protein_coding_gene FALSE TRUE AT4G24830.1 arginosuccinate synthase family Identical to Argininosuccinate synthase, chloroplast precursor (EC 6.3.4.5) (Citrulline--aspartate ligase) [Arabidopsis Thaliana] (GB:Q9SZX3;GB:Q8VZ47); similar to Ar (GB:ABE78918.1); similar to Os12g0235800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066459.1); contains InterPro domain Argininosuccinate synthase; (InterPro:IPR001518) -0.225626796088843 -2.27727289241575 0.0507853716397636 1 2.85451163034448 14.5347813169969 -0.225626796088843 0.104876304353953
AT2G40430_at 7.95012337961812 8.03192089961927 7.88049904313452 7.63387258072029 8.14303648822615 7.488045574275 8.35245847581823 7.91490340611144 6.93599923956811 7.71893302200454 6.72762423373046 7.50094205502917 7.096174184768 7.02842389278856 7.72048265662461 7.16445185825889 7.36171163055955 7.09763976864161 7.79185082232897 0.162358333296449 0.160068341337207 0.1529444197707 0.156691340350305 0.153889947777556 0.159960491311221 0.157881245533927 0.167198837660269 0.156640906960392 0.156456043421898 0.156290381128266 0.151587609652175 0.164974148141630 0.160652108106092 0.159017376853447 0.153178966679757 0.160256272300905 0.154708035588678 0.1565250054799 2 2|0 -|/ 16886647 16887825 16887124.429 16886294 16889505 - gene protein_coding_gene FALSE TRUE AT2G40430.1|AT2G40430.2 Identical to Protein At2g40430 [Arabidopsis Thaliana] (GB:O22892;GB:Q93XZ8); similar to Os05g0144200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054623.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90201.1); contains InterPro domain P60-like; (InterPro:IPR011687); contains InterPro domain Tumor suppressor protein Gltscr2; (InterPro:IPR011211)|Identical to Protein At2g40430 [Arabidopsis Thaliana] (GB:O22892;GB:Q93XZ8); similar to Os05g0144200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054623.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90201.1); contains InterPro domain P60-like; (InterPro:IPR011687) -0.273033930809939 -2.27604070558641 0.0508850811819671 1 2.85275794593299 15.2715786374490 -0.273033930809939 0.143539740252542
AT3G57785_at 7.87705238645274 7.983041934229 7.63749846708767 7.70001168376155 7.42948585645347 8.03404663101188 7.63184300064526 8.17490516252966 7.62301498912888 7.46200329224296 7.42238597614401 7.05561839485868 7.40703107080779 7.33225161028619 7.30327341097295 6.97232173888515 6.95559585596272 6.89938942811129 7.39878829893506 0.185807255326490 0.186709631017675 0.194175516890794 0.190237903399737 0.181276718824435 0.193515017009597 0.183473612368262 0.185610100719510 0.185478115077061 0.189952250249800 0.185134886444148 0.181276718824435 0.182175745999475 0.191369479887135 0.185778499487190 0.181276718824435 0.191588687532251 0.188225261000409 0.197112896256553 3 3 - 21415825 21416120 21415971.909 21415551 21416194 - gene protein_coding_gene FALSE TRUE AT3G57785.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42310.1); similar to Os09g0487500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063525.1); similar to BAC19.9 [Lycopersicon esculentum] (GB:AAG01124.1) -0.271284359533778 -2.27551703969431 0.0509275152888749 1 2.85201269619915 15.1400284548660 -0.271284359533778 0.142237030525784
AT1G65270_at 8.68894011804811 8.9452026055574 8.8867074303809 8.93891203382463 9.02322587272793 8.5667952589232 8.44614589304976 8.50179954658215 7.9512894992689 7.6286912001728 8.24879165484827 8.24346715992683 8.00443517635203 8.01748828714685 8.02228610115765 7.96072237870175 7.7490542639799 8.0276329913061 7.88406689803492 0.176158643560309 0.169283118440002 0.168351130592382 0.170185603595038 0.168988400787670 0.179226146262195 0.173141962692226 0.170165705626233 0.174080061410486 0.178012654901855 0.166919941799859 0.170612487188514 0.171384013580304 0.174035619541073 0.173444327520883 0.17121767707078 0.180282717539764 0.177427064042990 0.174273457347654 1 1|0 +|/ 24246197 24248138 24247391.556 24245386 24248651 + gene protein_coding_gene FALSE TRUE AT1G65270.1|AT1G65270.2|AT1G65270.3 similar to Unknown (protein for IMAGE:6863324) [Xenopus laevis] (GB:AAH84304.1); similar to Unknown (protein for IMAGE:8320811) [Xenopus laevis] (GB:AAI24845.1); similar to Os11g0264600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067654.1) 0.210636830336678 2.27544092594995 0.0509336859120224 1 2.85190437803977 16.6775080703049 0.210636830336678 0.0915428121778762
AT1G24706_at 5.34824904809829 5.42935165333307 5.34473737551504 5.31107853554269 5.36452484771702 5.47139656386145 5.49350013833194 5.58856449510658 5.53829819848338 5.32736057767601 5.19116327606356 5.24417656802891 5.14825415862698 5.14446641528455 5.15868897648698 4.94957937722524 5.29580299580106 5.3067244694703 5.36118488270722 0.140533244353679 0.144628274894214 0.143408678940349 0.146088750158121 0.143330889684285 0.146333074636135 0.139776864639407 0.140558359567542 0.144426830703782 0.143877773092297 0.142791221838434 0.140981764504613 0.144233371085626 0.143180030031909 0.152371581297113 0.141808860930913 0.141320145800253 0.141658188338116 0.146075863713758 1 1|0 +|/ 8742197 8754985 8750314.643 8741926 8755544 + gene protein_coding_gene FALSE TRUE AT1G24706.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to F5A9.21, related [Medicago truncatula] (GB:ABE85730.1); similar to putative THO complex 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD87730.1); similar to Eukaryotic DNA topoisomerases I, dispensable insert [Medicago truncatula] (GB:ABE94293.1); contains domain THO2 PROTEIN (PTHR21597); contains domain Prion-like (SSF54098) -0.160536429861922 -2.27487569329136 0.0509795330868048 1 2.85110000887729 10.7133277901444 -0.160536429861922 0.0290450205426055
AT1G64790_at 6.03476626758184 6.79001693882686 5.38880894342983 5.87255807455003 6.06044261076774 5.64403085581508 5.9565683530716 6.65348368944606 6.2410213865511 6.28593308606074 5.84140189847775 6.32958971838212 6.3017645963095 6.00575921073159 6.27272854863755 6.2385391466925 5.80214777384972 5.94823471549042 6.07597707455576 0.210551250650148 0.210941596745767 0.210303481943175 0.214456169675895 0.206680713004842 0.220700161867570 0.211518672226781 0.209872297458356 0.217346505808154 0.203774145455588 0.207313302023427 0.203269299167293 0.207158245998417 0.213377270891361 0.20301504667787 0.20301504667787 0.218196165439474 0.21235422698257 0.208669477968657 1 1 - 24069227 24069998 24069642.455 24068600 24085571 - gene protein_coding_gene FALSE TRUE AT1G64790.1 translational activator family protein similar to putative translational activator [Oryza sativa (japonica cultivar-group)] (GB:AAT77858.1); similar to HEAT repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98589.1); similar to HEAT repeat, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95705.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.362852586204364 -2.27445428146632 0.0510137412318439 1 2.85050032903298 12.1968334084164 -0.362852586204364 0.209353700043067
AT3G09540_at 5.16709614167957 5.51093404287564 3.907338824827 3.84236550463005 4.82871608012526 4.01338628701014 6.71703145058133 6.3239669418045 4.28545078759372 5.42255007540234 5.95008182551124 7.14050945709349 6.00854033081025 6.7732484513346 6.3704540299214 5.7043626860216 4.92412218031032 5.85685408891076 5.04994659454327 0.226338604160433 0.220128301997215 0.229791133505293 0.227847151740415 0.220628237306244 0.229206431835165 0.220781813460306 0.222469271922152 0.220958538410979 0.222927559206159 0.218297328349216 0.218474852902654 0.218967252427688 0.220375584767111 0.220570696574725 0.218297328349216 0.233724804295113 0.227538180916462 0.22934347156604 3 3 - 2929134 2929725 2929405.364 2928817 2931234 - gene protein_coding_gene FALSE TRUE AT3G09540.1 pectate lyase family protein similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G55140.1); similar to Os01g0546800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043284.1); similar to putative pectate lyase [Oryza sativa (japonica cultivar-group)] (GB:BAD73403.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.305049829013858 -2.2731333462163 0.0511211155277548 1 2.84862072251169 10.5440231344012 -0.305049829013858 0.167935121740158
AT1G61010_at 6.74172790543719 6.96747634880595 6.60920546750614 6.8769210344556 7.1560099306873 7.43021945506579 6.87550298144414 6.52654391201332 6.17469957807158 6.43847721515381 6.78090443282995 6.77908444918448 6.92657465681678 6.72654788156986 6.60887524179615 6.71315477006225 6.34355307227357 6.57830037802717 6.85088474900503 0.187455874486837 0.189698559954826 0.190373530867240 0.189480754514532 0.193132290223652 0.197527993236855 0.198913770390177 0.197345997104068 0.202565333096097 0.195991403426429 0.192155712135845 0.187455874486837 0.192515283144835 0.200538268266655 0.195484511564255 0.187455874486837 0.215050018976606 0.193689859213882 0.193849023620376 1 1 - 22478633 22479174 22478939.091 22477963 22481396 - gene protein_coding_gene FALSE TRUE AT1G61010.1|AT1G61010.2|AT1G61010.3 cleavage and polyadenylation specificity factor, putative|hydrolase similar to ATCPSF73-II (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73 KDA SUBUNIT-II), catalytic [Arabidopsis thaliana] (TAIR:AT2G01730.1); similar to PREDICTED: similar to Cleavage and Polyadenylation Specifity Factor protein [Gallus gallus] (GB:XP_419942.2); similar to unnamed protein product [Macaca fascicularis] (GB:BAE01170.1); similar to Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase [Medicago truncatula] (GB:ABE87741.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279); contains InterPro domain RNA-metabolising metallo-beta-lactamase; (InterPro:IPR011108) 0.217190015623390 2.27222671586161 0.0511949417797173 1 2.84733074946473 13.4830233166253 0.217190015623390 0.0978328815091945
AT1G28400_at 5.90982558070049 6.20679128697287 3.92641696941819 4.01917174555128 4.63946397465633 5.43561379582025 5.90448214416227 6.09227858673277 4.72078411050715 7.77596257804073 6.96724596625862 7.86995116572216 5.88058867290625 7.42911112720386 8.43973108902967 7.06622637274162 6.67093738332551 7.51445204947519 6.31927769389844 0.251806196456418 0.240614283805924 0.248226362245855 0.249062278488538 0.246511865367074 0.256588873678629 0.242359818252994 0.242327837782798 0.252365674520069 0.241816528806109 0.238000090782626 0.239179409494749 0.242668027637808 0.246756407975387 0.237986554737092 0.238853361076735 0.237311790322584 0.248748036877510 0.245655278854435 1 1 - 9972723 9973291 9972948.909 9972370 9973779 - gene protein_coding_gene FALSE TRUE AT1G28400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33850.1); similar to unknown [Brassica napus] (GB:AAC06020.1) -0.282702713714913 -2.27058522428082 0.0513288757136941 1 2.84499541658590 12.0176498134093 -0.282702713714913 0.151451418821045
AT3G53620_at 4.31791858849638 3.42261982594330 2.74126054373938 2.80565474292768 3.13214875971171 3.22009261629930 5.11948857400756 5.23329707195172 5.22610339231786 4.9243089009333 6.35417248172365 7.1753319326822 5.05643252881018 6.35208423623631 7.40168339775422 5.86136092104095 5.23545407218758 6.08457873102413 5.51705836430322 0.257130165171359 0.245107141010356 0.249858252839014 0.263508183555446 0.255805965127583 0.252529138751732 0.242621406535860 0.249815156914029 0.244496953740843 0.243041396695397 0.245415474310906 0.251676748560038 0.246099613274416 0.248583203874148 0.252881838389447 0.245419965417446 0.250004880995222 0.245188739888568 0.246661837481041 3 3|0 +|/ 19892540 19894093 19893472.75 19891482 19894650 + gene protein_coding_gene FALSE TRUE AT3G53620.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT1G01050.1); similar to putative inorganic pyrophosphatase [Arachis hypogaea] (GB:CAG30522.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) -0.290447390466308 -2.27047598347033 0.0513378012712915 1 2.84484001075354 9.45537384381823 -0.290447390466308 0.157317348680332
AT1G43900_at 8.07813174489175 8.41933332917003 8.26674110861272 8.26098513896814 8.00204418117388 8.10133277586836 8.12140916731947 8.36136924030754 8.36970549632456 8.03303587920475 8.15799725501246 7.98694879837537 7.98305798930383 8.03613965083185 8.15830269217614 7.93262016725942 7.6233671114017 8.0619605007141 8.46898147481487 0.152623548986001 0.152869060672617 0.151488059109673 0.154667994517894 0.149914778114771 0.155522350627739 0.154876478948229 0.15683899106783 0.169216907563786 0.148763111019538 0.146963975649665 0.146910674939181 0.152708145241925 0.156694480687001 0.162334825741476 0.146910674939181 0.175793361504508 0.155247062865079 0.155417624406632 1 1|0 +|/ 16657362 16658216 16657806.75 16656470 16658368 + gene protein_coding_gene FALSE TRUE AT1G43900.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31750.1); similar to protein phosphatase 2C [Mesembryanthemum crystallinum] (GB:BAB88944.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.192655041040063 -2.27031082143162 0.0513512988072926 1 2.84460505381265 16.3429801128302 -0.192655041040063 0.0742101325804618
AT1G80750_at 6.51829067297066 6.94474425433261 6.10133228975793 6.30462437078904 6.4079187089058 5.84101397312453 6.95051881102137 6.80611468457415 4.71254848586974 5.88723596593897 5.27016535879844 6.10349575573867 5.40290175936759 5.0076919276295 6.51555236684034 5.45357537379197 5.67547276759507 4.93519199124239 5.64469760907646 0.21111572351891 0.213034125251606 0.207953852481772 0.213034115672445 0.215693299032459 0.212147221971370 0.211748971304794 0.213816540104021 0.218907380778589 0.213093623704268 0.208948028832363 0.210286223522072 0.207953852481772 0.215253793774440 0.207992741133806 0.211940502012883 0.217325805098521 0.218101926739832 0.220193850538283 1 1|0 +|/ 30354513 30355220 30354793.1 30353693 30355456 + gene protein_coding_gene FALSE TRUE AT1G80750.1 60S ribosomal protein L7 (RPL7A) Identical to 60S ribosomal protein L7-1 (RPL7A) [Arabidopsis Thaliana] (GB:Q9SAI5); similar to 60S ribosomal protein L7 (RPL7D) [Arabidopsis thaliana] (TAIR:AT3G13580.1); similar to putative 60S ribosomal protein L7-like protein [Solanum tuberosum] (GB:ABC01902.1); contains InterPro domain Ribosomal L30, N-terminal; (InterPro:IPR012988); contains InterPro domain Ribosomal protein L30; (InterPro:IPR000517); contains InterPro domain Ribosomal protein L7, eukaryotic form; (InterPro:IPR005998) -0.255258105541634 -2.27019892286589 0.051360445487635 1 2.8444458702707 11.9644863538115 -0.255258105541634 0.130127885536820
AT1G68570_at 9.58616854338908 9.77965504280074 10.1098463213484 10.2266259433007 10.1228528061721 9.93330321074965 10.3717851530954 10.1168742291614 8.94386916421605 8.65079377392809 8.54113465887463 8.81823593752678 9.10691426211575 8.82493132066527 8.57999486766327 9.46149717400027 8.99664629749547 8.24356897506879 8.15657878664529 0.142447093473138 0.140859627442696 0.145594643907572 0.144858431642523 0.140859627442696 0.142394254512496 0.140859627442696 0.143105717608198 0.149710936374032 0.142082608096639 0.144620434088833 0.148579195050895 0.140859627442696 0.153403618053329 0.154307155067135 0.142668071900249 0.160135886146631 0.151304633433315 0.147048933358394 1 1|0 +|/ 25753050 25753686 25753245.6 25750399 25753938 + gene protein_coding_gene FALSE TRUE AT1G68570.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to Os06g0264500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057335.1); similar to nitrite transporter [Cucumis sativus] (GB:CAA93316.2); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.186202261680436 2.26707313091276 0.0516166025144768 1 2.83999974084932 18.7335702453886 0.186202261680436 0.0674653853949455
AT1G08640_at 8.44419865609812 8.62797720483909 8.28228014106225 8.3643205954359 8.87075029630297 8.18459412407658 9.38263570563207 9.18633207393722 8.57335230601098 9.01665571635098 8.68292502160208 8.83589278417298 8.6975927010661 8.78515819044735 9.01644627408771 8.5704632177529 8.74355022571028 8.77269940432149 8.76034396365886 0.168696316422624 0.160779823391830 0.187142563765678 0.189685519763396 0.158017531785292 0.176801562700937 0.158264801516573 0.162374344439633 0.188047689558210 0.163739986632029 0.159995972831221 0.166129845880297 0.161025744154785 0.163645780564446 0.161488500531537 0.159731019155825 0.189541105956205 0.161344194806132 0.162466095678766 1 0|1 /|- 2748737 2750356 2749595.5 2748401 2751281 - gene protein_coding_gene FALSE TRUE AT1G08640.1 heat shock protein binding similar to Os10g0478100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064859.1); similar to Os08g0127600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060904.1); similar to unknown protein [Oryza sativa] (GB:AAG13571.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.252579652759515 -2.26637405458353 0.0516740641143134 1 2.83900551422443 17.4411569193741 -0.252579652759515 0.128323341356510
AT3G15190_at 11.2011133103747 11.1891273400809 10.3687526515420 10.3433378425636 11.1469765900934 10.6293564991190 11.2495793719310 11.2150890435495 11.3363991403322 11.3989231274233 11.6109571759690 11.9038264353025 11.3134710977145 11.3659439554988 12.2172364650785 11.4391794901956 10.9445717732890 11.4495166263736 11.3299186516694 0.0932184600791236 0.0906437546696432 0.0965544845802682 0.101519009780391 0.0930928073465407 0.0995633965837569 0.0921973427903447 0.0907711380462405 0.100741505306621 0.0909308691740114 0.0894577379106832 0.0901133372513984 0.0894577379106832 0.0928805885721992 0.089773694994337 0.0913158581237196 0.0976181610565132 0.0950901691110474 0.0903345752507216 3 3|0 +|/ 5116232 5117393 5116787.4 5116148 5117622 + gene protein_coding_gene FALSE TRUE AT3G15190.1 chloroplast 30S ribosomal protein S20, putative Identical to 30S ribosomal protein S20, chloroplast precursor (RPS20) [Arabidopsis Thaliana] (GB:Q9ASV6;GB:Q9LIL6); similar to Os01g0678600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043859.1); similar to ribosomal protein rpS20 [Bigelowiella natans] (GB:AAP79183.1); contains InterPro domain Ribosomal protein S20; (InterPro:IPR002583); contains InterPro domain Ribosomal protein S20p; (InterPro:IPR010013) -0.208056899850936 -2.26634323103039 0.0516765991567728 1 2.83896167813985 22.3607506731081 -0.208056899850936 0.0899068057611057
AT1G63770_at 11.2951543128695 11.2074997551080 11.6351334718777 11.6577657752881 11.7709766989557 11.392790271319 11.6807761257809 11.3681478319148 10.8017519014575 11.3159103648747 11.1987927302769 11.1223816684488 11.4441583039853 11.0190505444404 10.9667191215358 11.4723839041169 11.6764970482623 11.4269935291092 11.2077886575100 0.0763481359171437 0.0702762892390108 0.072927091347687 0.071071530331187 0.0701754240710797 0.0717728209324281 0.0701754240710797 0.0713213775095713 0.0770804033065868 0.0729489785185148 0.0701754240710797 0.0707501255531227 0.0743559054231707 0.0827838260066896 0.0763296174653576 0.0709535749149322 0.0730399986842258 0.0782452919056745 0.0711114660059893 1 1|0 -|/ 23661703 23662352 23662084.667 23661169 23667906 - gene protein_coding_gene FALSE TRUE AT1G63770.1|AT1G63770.2 peptidase M1 family protein similar to APM1 (Aberrant peroxisome morphology 1) [Arabidopsis thaliana] (TAIR:AT4G33090.1); similar to Peptidase M, neutral zinc metallopeptidase, zinc-binding site [Nitrosococcus oceani ATCC 19707] (GB:YP_343342.1); similar to Puromycin-sensitive aminopeptidase and related aminopeptidases (ISS) [Ostreococcus tauri] (GB:CAL56589.1); similar to putative aminopeptidase N [Oryza sativa (japonica cultivar-group)] (GB:BAD09617.1); contains InterPro domain Peptidase M1, alanyl aminopeptidase; (InterPro:IPR012779); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930) 0.20433025646652 2.26629096085453 0.0516808983295149 1 2.83888734171327 22.7007084041656 0.20433025646652 0.0863466414874214
AT3G29075_at 8.23354064717533 8.27555625191218 8.6167500609226 8.55715727798878 8.71281619303481 8.12690761813545 7.96236649456193 8.03145327050927 8.58553727871154 8.67889614469378 8.75539283196286 8.99688714257292 8.80880005362372 8.72835212909079 8.14223596560338 8.57947165221044 8.48603312096054 8.02234762857522 8.23062239876929 0.143534696169536 0.137684101924683 0.142210309563365 0.141129278495071 0.142045886770485 0.143954323741102 0.151814240310839 0.142471332351291 0.157361154303191 0.137636093913128 0.143268008298690 0.141069252961903 0.140825703730957 0.145147001690783 0.146906792713806 0.138842116551259 0.151456144749076 0.156643471178768 0.145271401720420 3 3 - 11052882 11053557 11053358.273 11052726 11053931 - gene protein_coding_gene FALSE TRUE AT3G29075.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56660.1); similar to Stress protein DDR48 , related [Medicago truncatula] (GB:ABE86766.1) 0.222133373165425 2.26499085607782 0.0517879445905604 1 2.83703848064573 16.8462144799300 0.222133373165425 0.102873458284593
AT3G54350_at 7.82333843696715 8.098384180557 8.2416265070445 8.36173348262324 8.85171732384713 8.6650287425251 8.2616624343411 8.16533608801239 7.20065868193897 7.54183308152868 7.16701389153842 7.36956616852222 7.68747434727045 7.20557327324649 7.04139244618315 7.66122441642155 7.74569106186464 7.35575197469362 7.70421520337361 0.186085654846160 0.184351223122483 0.184353230403992 0.184351223122483 0.186378350512536 0.188608634813995 0.184351223122483 0.184351223122483 0.194676942805837 0.186546527672815 0.188403745037142 0.185063171487232 0.189333993424280 0.187653723343753 0.190362256913906 0.186865467713134 0.190507273832984 0.184351223122483 0.184351223122483 3 3|0 -|/ 20133529 20134462 20133991 20133061 20137850 - gene protein_coding_gene FALSE TRUE AT3G54350.1|AT3G54350.2|AT3G54350.3 EMB1967 (EMBRYO DEFECTIVE 1967) similar to forkhead-associated domain-containing protein / FHA domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75530.1); similar to Forkhead-associated [Medicago truncatula] (GB:ABE89642.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) 0.182410760447198 2.26385777164717 0.0518814177253996 1 2.83542728279519 15.7518267010304 0.182410760447198 0.0633973751898639
AT2G04340_at 6.1954662735754 6.19500233835748 6.52389597071663 6.14118508139827 6.67737093652356 6.67005928014984 6.59704352867968 6.02394170715503 5.82828312225928 5.73286026826477 5.87083871207485 5.64441295575871 6.1905859569445 6.13464369443218 6.0675377605751 5.84530291197237 6.4886522268844 6.18350004397304 5.90320495947125 0.158080564506543 0.160055392975022 0.166854996562741 0.156733592340002 0.162172851584344 0.165386496833709 0.167494004743964 0.161241931268732 0.16705760535908 0.154544991454633 0.162567927330224 0.161533100879754 0.160789198426594 0.157286778936308 0.161373723851995 0.160240323258992 0.159468350192093 0.156110358446229 0.156873486891692 2 2 + 1514422 1515141 1514756.273 1513509 1515537 + gene protein_coding_gene FALSE TRUE AT2G04340.1 similar to Os09g0478400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063471.1) 0.240999594041821 2.26190130466993 0.0520432081023884 1 2.83264559134563 12.3153125059822 0.240999594041821 0.119265552785734
AT1G06400_at 9.27959318736504 9.5232202689871 9.58431338093302 9.72337666988046 9.9387436743349 9.62145914887045 9.39935077767694 9.37646542595607 8.44277056723553 8.81392446206403 8.9652175987035 8.20445517712611 8.9450767398877 8.82856260581213 8.24758981399536 8.96820484104656 9.09007818111028 8.69612037728444 8.79287809198087 0.161319835559235 0.161383494664007 0.164747385906059 0.161062347141789 0.163887713913366 0.168494815624496 0.162017965079272 0.157799381617877 0.175454898066186 0.158900420648834 0.157813122641780 0.167489159406928 0.161207124908083 0.165354105346146 0.158498052267634 0.15695128743114 0.162925701628403 0.166900070377259 0.164882073741736 1 1 - 1951088 1952607 1951739.091 1950843 1952784 - gene protein_coding_gene FALSE TRUE AT1G06400.1 ARA2 (Arabidopsis Rab GTPase homolog A1a); GTP binding small GTP-binding protein (ara-2) Identical to Ras-related protein ARA-2 (ARA-2) [Arabidopsis Thaliana] (GB:P28185); similar to AtRABA1c (Arabidopsis Rab GTPase homolog A1c), GTP binding [Arabidopsis thaliana] (TAIR:AT5G45750.1); similar to Ras-related protein Rab11D (GB:Q40194); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.191143964976185 2.26149049401605 0.0520772434629233 1 2.83206155544407 18.2689924203993 0.191143964976185 0.073397614532757
AT3G10160_at 6.24481732534836 6.13197952982938 5.35482826273304 5.21972424807838 7.28438640611882 5.78720407244066 7.3157481031074 6.74026569530018 6.4914876431044 6.59983283053633 6.03622156249202 6.56891429754432 6.56179559418215 6.62065744607651 6.00636317530943 6.32118839369522 6.32564754451539 5.96543384389962 6.49165968380033 0.235138842613700 0.236730565562783 0.239157364363676 0.233798553314575 0.233658566110454 0.245356926910450 0.239563535905738 0.233658566110454 0.241454109742236 0.233658566110454 0.244348816640330 0.239035049594512 0.235462253285912 0.243414132062357 0.2444021664576 0.233658566110454 0.244283011394469 0.247028765862629 0.243023281574329 3 3|0 -|/ 3139845 3140341 3140115.375 3139388 3144528 - gene protein_coding_gene FALSE TRUE AT3G10160.1 ATDFC (A. THALIANA DHFS-FPGS HOMOLOG C); dihydrofolate synthase similar to ATDFB (A. THALIANA DHFS-FPGS HOMOLOG B), tetrahydrofolylpolyglutamate synthase [Arabidopsis thaliana] (TAIR:AT5G05980.2); similar to putative folylpolyglutamate synthetase [Oryza sativa (japonica cultivar-group)] (GB:AAG13624.1); similar to Os03g0111100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048721.1); contains InterPro domain Folylpolyglutamate synthetase; (InterPro:IPR001645) -0.461774618159814 -2.26096746808690 0.0521206076136326 1 2.83131801294452 12.6740880977169 -0.461774618159814 0.279241833734948
AT1G12840_at 10.5424756149661 10.6072911400727 10.6547389202807 10.7666158665366 10.7996059443423 10.4060492342349 10.9488717545883 10.922441709728 9.99540321745926 10.2073594889267 10.6684068215836 10.5395601322599 10.6622484515158 10.6504811800791 10.7091578102949 10.6084616822399 10.5457372907108 10.4838234265282 10.1894133962933 0.0790839742649179 0.0769592282243777 0.0796969633083061 0.0791319586496645 0.0794342869315693 0.0812443854119379 0.0799393626799551 0.0775867953534377 0.0972964004504939 0.0811372073241725 0.0791645846238163 0.0787453140795811 0.0769592282243777 0.0806206641452413 0.0794275591922975 0.0769592282243777 0.0830683599616974 0.0834294451042635 0.0817222708928846 1 1|0 +|/ 4376851 4378177 4377456.111 4375513 4378512 + gene protein_coding_gene FALSE TRUE AT1G12840.1 DET3 (DE-ETIOLATED 3) Encodes subunit C of the vacuolar H(+)-ATPase (V-ATPase). Bound and phosphorylated by AtWNK8. Identical to Vacuolar ATP synthase subunit C (EC 3.6.3.14) (V-ATPase C subunit) (Vacuolar proton pump C subunit) (VATC) [Arabidopsis Thaliana] (GB:Q9SDS7); similar to vacuolar H+-ATPase subunit C [Gossypium hirsutum] (GB:ABH07428.1); contains InterPro domain ATPase, V1 complex, subunit C; (InterPro:IPR004907) 0.189620834175823 2.26064702412980 0.0521471932945756 1 2.83086247888597 21.0756162565743 0.189620834175823 0.071833933005379
AT2G41600_at 5.92725183126787 5.97411636964633 5.7679173765922 5.76876708152385 6.53665670581696 5.45859959510342 5.9042822258533 5.36754415193184 4.17227139424826 4.73953269078099 4.73451900348138 5.35980925801964 4.96671545038401 4.31134371735296 6.02313871188288 5.5000666158255 5.57989736806652 4.83683312183971 4.6921664343468 0.231586555771483 0.236990264297428 0.239330715720785 0.240180418769188 0.231586555771483 0.235658628720312 0.236024924879167 0.253120183645888 0.247341509104089 0.231586555771483 0.231586555771483 0.235248483607703 0.231586555771483 0.240403537825348 0.237087126406461 0.233633905165536 0.248195054304279 0.238429403373289 0.236085640754167 2 2|0 -|/ 17353118 17353744 17353323.8 17352455 17353815 - gene protein_coding_gene FALSE TRUE AT2G41600.1|AT2G41600.2|AT2G41600.3 similar to Os11g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065708.1); similar to Mitochondrial glycoprotein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22358.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428)|similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT1G80720.1); similar to Os11g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065708.1); similar to Mitochondrial glycoprotein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22358.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428) 0.359535055574418 2.26064667879001 0.0521472219529715 1 2.83086198796665 10.6874905400413 0.359535055574418 0.208564393911199
AT2G44150_at 6.44841153566207 6.64834869187576 6.09692670196782 5.89332337453637 7.28734414240043 7.12261750622131 6.72609611329814 6.18957660620812 5.84859158211029 5.92980227251632 6.67539918094519 6.64098212695907 5.88077093943061 6.21359339423581 6.60665465045329 6.19677003000578 6.17353484742956 6.06803712299239 6.06212229770286 0.192193676183835 0.191066659804795 0.190380706262612 0.199414950169875 0.194976927118737 0.190946249987938 0.201357623698201 0.196633177591297 0.19617355500977 0.196959470383475 0.192130216637425 0.186202387822807 0.186202387822807 0.202927223765656 0.186202387822807 0.186202387822807 0.189606965743777 0.197861570916620 0.190623509127010 2 2|0 +|/ 18266989 18268030 18267481 18265686 18268518 + gene protein_coding_gene FALSE TRUE AT2G44150.1 SET domain-containing protein (ASHH3) Identical to Histone-lysine N-methyltransferase ASHH3 (EC 2.1.1.43) (ASH1 homolog 3) (Protein SET DOMAIN GROUP 7) (ASHH3) [Arabidopsis Thaliana] (GB:Q945S8;GB:O80584;GB:Q94AQ1); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G59960.1); similar to SET domain protein 110 [Zea mays] (GB:AAN41254.1); similar to Os09g0307800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062827.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain AWS; (InterPro:IPR006560); contains InterPro domain SET-related region; (InterPro:IPR003616) 0.228536881816884 2.25930588095642 0.0522586069406382 1 2.82895606742468 12.6784838360211 0.228536881816884 0.108958111654566
AT3G03960_at 7.84328228308724 7.92247984046145 7.63296066780016 7.4782931462646 7.40826266026991 7.71380033944127 7.94365319417186 8.34724113821552 7.23203784451045 7.75469183279479 7.32087971866663 8.06439099232564 7.33539240343203 7.00953723167285 8.19912330586992 7.5389795984644 7.35344221417551 7.57549872136374 7.55610215280165 0.172131666039253 0.168180640801792 0.172766159155608 0.17677994257937 0.168974113284895 0.175582604062111 0.16612879404812 0.164423728059784 0.167908213839766 0.173686108501731 0.171754643805853 0.167951955435944 0.164928872799939 0.180575084491304 0.16688898668381 0.171337490778939 0.173850710880170 0.168181888811801 0.166307362448262 3 3 + 1026474 1027577 1026873.091 1024265 1027898 + gene protein_coding_gene FALSE TRUE AT3G03960.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to hypothetical protein DDBDRAFT_0217758 [Dictyostelium discoideum AX4] (GB:XP_643258.1); similar to Os03g0804800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051623.1); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, theta subunit; (InterPro:IPR012721) -0.210228331997995 -2.25864015849621 0.0523139982613185 1 2.82800982658857 15.3182130586883 -0.210228331997995 0.0926175234380208
AT1G32230_at 10.6203160460488 10.4172068346890 10.8960782789660 10.8643991077297 10.8143481445403 10.3655500120415 10.2759087737792 10.1876315607046 10.167595577655 10.2001102642450 10.3075415186742 10.3110407444690 10.1769448700975 10.2975466832779 10.0368324022132 10.572353704403 10.1724714895492 10.2174311450926 10.2720035058395 0.0915788889960407 0.0908109131939132 0.0925162653983219 0.092445367720023 0.092255052640022 0.0969259045217502 0.0910862075229665 0.0918444305942858 0.10034819458703 0.0953097757102533 0.095772950732733 0.0908109131939132 0.0921970746520488 0.0950432429090408 0.094033169671264 0.0908109131939132 0.0980529511296067 0.096933841220369 0.0945475375376288 1 1 + 11614730 11615688 11615318.636 11612117 11616198 + gene protein_coding_gene FALSE TRUE AT1G32230.1|AT1G32230.2 RCD1 (RADICAL-INDUCED CELL DEATH1) Encodes a protein belonging to the (ADP-ribosyl)transferase domain-containing subfamily of WWE protein-protein interaction domain protein family. Superoxide radicals are necessary and sufficient to propagate cell death or lesion formation in rcd1 mutants. Without stress treatment, RCD1 is localized in the nucleus. Under high salt or oxidative stress, RCD1 is found not only in the nucleus but also in the cytoplasm. similar to SRO1 (SIMILAR TO RCD ONE 1), NAD+ ADP-ribosyltransferase [Arabidopsis thaliana] (TAIR:AT2G35510.1); similar to Os10g0577800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065494.1); similar to putative CEO protein (alternative splicing products) [Oryza sativa (japonica cultivar-group)] (GB:AAO66528.1); contains InterPro domain WWE; (InterPro:IPR004170); contains InterPro domain PARP, catalytic; (InterPro:IPR012317); contains InterPro domain Poly(ADP-ribose) polymerase, catalytic region; (InterPro:IPR001290) 0.204055976244789 2.25827670829419 0.0523442635509938 1 2.82749324798374 20.7925582292967 0.204055976244789 0.0867812720515126
AT4G35090_at 12.3544937537240 12.6039039805953 13.2146699177221 13.3486852599067 12.7682084873456 12.7028180192874 13.6928841862193 13.933310372918 13.5550653678660 13.8996602003797 13.4817614738345 13.1168182883053 13.7664993724388 13.4556624799213 12.8613354935783 13.7513549301875 13.6456487003688 13.7302440524687 13.6623727021218 0.0630734319821683 0.0615006557242363 0.0621072515966207 0.0629687475459375 0.0646892077714793 0.0628522301847357 0.061031497620745 0.064803702509954 0.0697114147507962 0.0616055565820356 0.0633863821471628 0.0612097306394522 0.0617084689419526 0.0652955016485225 0.0632106828526101 0.0616725944654795 0.0714814488588585 0.063932021610924 0.061031497620745 4 4 - 16701141 16701901 16701550.182 16700347 16703330 - gene protein_coding_gene FALSE TRUE AT4G35090.1|AT4G35090.2 CAT2 (CATALASE 2); catalase Encodes a peroxisomal catalase, highly expressed in bolts and leaves. mRNA expression patterns show circadian regulation with mRNA levels being high in the subjective early morning. Identical to Catalase-2 (EC 1.11.1.6) (CAT2) [Arabidopsis Thaliana] (GB:P25819;GB:O49615); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT3 (CATALASE 3), catalase [Arabidopsis thaliana] (TAIR:AT1G20620.1); similar to catalase [Raphanus sativus] (GB:AAF71742.1); similar to catalase [Brassica juncea] (GB:AAD17934.1); similar to catalase (GB:1906388A); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226)|Identical to Catalase-2 (EC 1.11.1.6) (CAT2) [Arabidopsis Thaliana] (GB:P25819;GB:O49615); similar to CAT1 (CATALASE 1), catalase [Arabidopsis thaliana] (TAIR:AT1G20630.1); similar to CAT3 (CATALASE 3), catalase [Arabidopsis thaliana] (TAIR:AT1G20620.5); similar to catalase [Raphanus sativus] (GB:AAF71742.1); similar to catalase [Brassica juncea] (GB:AAD17934.1); similar to catalase (GB:1906388A); contains InterPro domain Catalase, N-terminal; (InterPro:IPR011614); contains InterPro domain Catalase; (InterPro:IPR002226) -0.18354323843332 -2.25806151487800 0.0523621913292858 1 2.82718739626691 26.6683042583866 -0.18354323843332 0.0652685105923827
AT1G49500_at 11.9550244136726 12.1807219609696 12.2445666534606 12.4139310464755 12.7418766087548 12.6248393871978 12.3058351516772 12.6703905826875 12.2464810854441 12.5737409039473 12.9859557994902 12.5470304304216 12.8092341777153 12.7130465772913 12.3845796570586 12.4604784112261 12.7575583046341 12.5631717087643 12.6257735240928 0.0814102447400561 0.078295082624001 0.0815541392636713 0.078295082624001 0.0808395840466312 0.0821254157182202 0.0810420117080743 0.0785487448696764 0.0905642280301752 0.0794188905946915 0.0827753801723144 0.0784185030324328 0.0798409485554099 0.081818943730051 0.0820952686988177 0.079879374692632 0.084084549328207 0.0819654410759792 0.0792342849156435 1 1 - 18325684 18325810 18325743 18325476 18325952 - gene protein_coding_gene FALSE TRUE AT1G49500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G19030.1) 0.199471887775436 2.25789528726858 0.0523760439161666 1 2.82695114247018 24.9594634195219 0.199471887775436 0.0823096544819387
AT3G27260_at 8.9212329413988 8.67145086337384 9.27942162931118 9.02889275414061 9.30936790610671 9.27088182817253 8.8903881105293 8.47900808015154 8.66762045867601 8.92542857986355 8.97008246949405 8.6743415467418 8.8659940450063 8.66580696473381 8.51075464006652 9.03698636554024 9.104215048661 8.89583127372085 9.10268729370872 0.099754262856381 0.0995676694849518 0.103049094191890 0.102898494036363 0.104613289233097 0.106523244476224 0.107324606692788 0.103445962602500 0.114344093556990 0.100125358903275 0.099903208279495 0.100322251035286 0.0992379457148522 0.104594976324205 0.101395956863439 0.0967120466098855 0.0967120466098855 0.102137470839869 0.0967120466098855 3 0|3 /|+ 10073142 10073596 10073401 10068875 10073898 + gene protein_coding_gene FALSE TRUE AT3G27260.1 GTE8 (GLOBAL TRANSCRIPTION FACTOR GROUP E8); DNA binding Kinase like protein with similarity to yeast BDF1 and human RING3 protein, which have two bromodomains GTE8 has a single bromodomain similar to ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G14270.1); similar to putative bromodomain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08859.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.211771898699435 2.25774855614873 0.0523882747709327 1 2.8267426008741 17.8508706749789 0.211771898699435 0.094131320075117
AT4G24810_at 6.26099133339013 6.15260000860626 6.76371330009232 6.51363564588858 7.22880241271304 6.57614838809913 7.11151046116939 6.4848195733072 6.24748676528967 7.15751653532944 5.52901473286479 5.84105579368597 6.35099741703891 5.9495441279155 5.32764414412492 6.75512856811466 6.39824007995955 5.90591726818788 7.20175456589114 0.237621636266363 0.215575040165741 0.228009273009717 0.227792404821896 0.226066995209007 0.219575782754549 0.222084620956564 0.218348726386625 0.222629264623372 0.217963834661480 0.217848418921141 0.217573484836615 0.217878685193478 0.231071076719348 0.227040964463803 0.215575040165741 0.226077123090286 0.215896684513694 0.218161871810471 4 4 - 12786938 12788230 12787325.182 12786618 12789792 - gene protein_coding_gene FALSE TRUE AT4G24810.1|AT4G24810.2 ABC1 family protein|ATP binding / electron carrier/ heme binding / iron ion binding / protein kinase similar to ABC1 family protein, contains InterPro domain ABC1 protein (InterPro:IPR004147) similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT5G50330.1); similar to Os01g0904200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045121.1); similar to ABC transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain ABC-1; (InterPro:IPR004147)|similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT5G50330.1); similar to Os01g0904200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045121.1); similar to ABC transporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.296815964885101 -2.25572411031419 0.0525573119226377 1 2.82386559584595 13.0745836680699 -0.296815964885101 0.163533109843068
AT1G04390_at 4.75849380443303 5.04240600716016 4.41459901708896 4.35547553197032 5.29622672569167 5.034163093813 5.27354510703252 4.69176541053501 4.92692932309864 4.93373627352134 4.58117571258463 4.60227025539815 4.88012791952796 4.24437073277008 4.35221602459296 4.60067836978486 5.5008885032754 4.77255824480575 5.17048737201421 0.217449469209633 0.222540211834457 0.222675509956969 0.226037663776567 0.226967095044689 0.224456840582395 0.22895918226265 0.233135133258521 0.225918847438174 0.219972750859346 0.220524260852516 0.217449469209633 0.217449469209633 0.217449469209633 0.224599905012457 0.225029823152063 0.231670030634754 0.224498081950825 0.224090698001360 1 1 - 1179707 1180580 1180112 1179362 1183703 - gene protein_coding_gene FALSE TRUE AT1G04390.1 binding / protein binding similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46540.1); similar to Os06g0674800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058343.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.242517546342392 -2.25322263360259 0.0527669245612848 1 2.82031128424271 9.70941935882585 -0.242517546342392 0.121292270437221
AT1G19220_at 5.04888365738619 5.09342678290328 5.21477204976439 5.34373291386574 6.42849918782874 6.16882184099729 6.09611167806152 5.45957027984753 4.72715730600155 4.75763835710082 4.7879014323736 5.34015381029283 5.18283256742396 5.46602335484556 4.24188125137856 5.17867753556373 5.64261689986774 4.53054615051844 5.29249112920311 0.217404386190583 0.211129260773995 0.212211151313743 0.216236350089976 0.216051956230502 0.231200001632047 0.211840793419469 0.212278656420765 0.212780504807014 0.218349082912729 0.220853512173463 0.211129260773995 0.212991248569363 0.219944298134784 0.228007824382143 0.220087142819986 0.221342236583703 0.213320230713487 0.221163892362665 1 1 - 6628396 6629113 6628865.455 6628059 6632988 - gene protein_coding_gene FALSE TRUE AT1G19220.1 ARF19 (AUXIN RESPONSE FACTOR 11); transcription factor Encodes an auxin response factor that contains the conserved VP1-B3 DNA-binding domain at its N-terminus and the Aux/IAA-like domains III and IV present in most ARFs at its C-terminus. The protein interacts with IAA1 (yeast two hybrid) and other auxin response elements such as ER7 and ER9 (yeast one hybrid). ARF19 protein can complement many aspects of the arf7 mutant phenotype and , together with ARF7, is involved in the response to ethylene. In the arf7 arf19 double mutant, several auxin-responsive genes (e.g. IAA5, LBD16, LBD29 and LBD33) are no longer upregulated by auxin. Identical to Auxin response factor 19 (Auxin-responsive protein IAA22) (ARF19) [Arabidopsis Thaliana] (GB:Q8RYC8;GB:O49961;GB:Q9LMA4); similar to NPH4 (NON-PHOTOTROPHIC HYPOCOTYL), transcription factor [Arabidopsis thaliana] (TAIR:AT5G20730.2); similar to auxin response factor 2 [Cucumis sativus] (GB:BAD19062.1); similar to Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation [Medicago truncatula] (GB:ABE90964.1); similar to auxin response factor 1 [Cucumis sativus] (GB:BAD19061.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.242512629872818 2.25319695156096 0.0527690808790287 1 2.82027479656189 10.5927729935243 0.242512629872818 0.121290490574708
AT1G08660_at 6.15963763435775 6.46698719404647 5.93402178003578 6.19632675782302 6.7184718907215 5.9663645512666 6.11686480849108 6.20699968975939 5.37912591711427 6.3421657377525 6.94119438519557 6.62254757117528 6.05970887419717 6.62890180191544 6.83458874245693 6.75617604402858 6.08878878431634 5.72685355503118 5.8910665998262 0.232192179226999 0.230355632457057 0.230782745284134 0.233258843280427 0.227432930102643 0.239280952625203 0.226304611672611 0.235324392095284 0.23765715630625 0.227219744996407 0.229963974364474 0.222852930421424 0.233469198547685 0.224372778576250 0.230212951765073 0.222386457485438 0.244675526497798 0.24502538801024 0.231235943072832 1 1|0 -|/ 2757613 2758665 2758068.667 2757044 2759797 - gene protein_coding_gene FALSE TRUE AT1G08660.1|AT1G08660.2 glycosyl transferase family 29 protein / sialyltransferase family protein similar to glycosyl transferase family 29 protein / sialyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G48820.1); similar to sialyltransferase like protein [Aquile (GB:CAJ44461.1); similar to sialyltransferase-like protein [Solanum lycopersicum] (GB:CAJ15147.2); similar to sialyltransferase-like protein [Solanum tuberosum] (GB:CAJ15155.1); contains InterPro domain Glycosyl transferase, family 29; (InterPro:IPR001675)|similar to glycosyl transferase family 29 protein / sialyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G48820.1); similar to sialyltransferase-like protein [Solanum tuberosum] (GB:CAJ15155.1); contains InterPro domain Glycosyl transferase, family 29; (InterPro:IPR001675) 0.276366399094978 2.24975915647928 0.0530585121899618 1 2.81539121626630 12.3847748156563 0.276366399094978 0.148570971581346
ATCG00330_at 10.7014154192323 11.0768580013915 10.9147954592844 11.4874239555443 9.6651737556524 10.2588645186998 10.3589059256791 11.4292722635322 11.4634824314784 11.7415654565032 11.1603007778081 11.6558657631198 11.2471278381570 11.3412277537336 10.5168169672131 11.5472518127241 10.2235857474792 11.5637411926285 11.7741320078423 0.0977048886391014 0.101202788596153 0.101307247690685 0.100090366817683 0.102959362117019 0.103778414049835 0.0970248940476887 0.10186473098718 0.097510045157895 0.0962978361004096 0.102404914075418 0.0972518217204952 0.0984444424529854 0.103663947825724 0.103489004012538 0.096522076963668 0.118407266481994 0.0997546661689881 0.0962978361004096 C C - 36959 37161 37047.273 36938 37240 - gene protein_coding_gene FALSE TRUE ATCG00330.1 30S chloroplast ribosomal protein S14 similar to ribosomal protein S14 [Gossypium hirsutum] (GB:YP_538933.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) -0.406392690248455 -2.24969105558678 0.0530642614758889 1 2.81529448834745 22.1449468441516 -0.406392690248455 0.24270960381725
AT4G36780_at 7.31914124514226 7.55815096115698 6.84831610941284 6.50840869883886 7.89107777047435 7.82131809361772 7.27727064231183 6.38768277421674 6.17484553136945 5.77359158313402 6.25156383109111 6.44029452438941 7.159171365162 5.86121352834378 6.48091804331492 6.31341917926182 6.56797706178021 6.38923672250574 5.9149945995414 0.240769364943498 0.239394419168309 0.238632761100938 0.253176404992954 0.244007727950047 0.250335940714538 0.24030115367405 0.243809627947546 0.252762058605298 0.235777196516323 0.237408533878818 0.241658249361727 0.234308035229537 0.234179142992652 0.240862543717019 0.234621721060871 0.246450756985892 0.240427826430027 0.23862685839931 4 4|0 -|/ 17333285 17334163 17333670.3 17332523 17334347 - gene protein_coding_gene FALSE TRUE AT4G36780.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 2 (BEH2) [Arabidopsis Thaliana] (GB:Q94A43;GB:Q7FC21); similar to brassinosteroid signalling positive regulator-related [Arabidopsis thaliana] (TAIR:AT3G50750.1); similar to Os06g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057840.1); similar to Os01g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042330.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB33003.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) 0.305107903172578 2.24947854866380 0.0530822059159329 1 2.81499265490448 13.3951465468945 0.305107903172578 0.170342029675706
AT4G04870_at 5.62217875350122 5.32893651786742 5.56251596265847 5.52530598629215 5.13507957724362 4.97383833106299 5.06843717748872 5.63693775631407 3.94984418686825 4.25439449313564 4.20131731237421 4.9452733274173 4.24237811768066 4.46951028314988 4.55234846112793 4.71043589940063 4.94670519394464 4.60271732408569 3.80047323343528 0.233031148512297 0.226062450604747 0.225999288932936 0.226519757856544 0.224766908796336 0.225436337061784 0.224327733330465 0.219889069477314 0.233059381095165 0.222378210629743 0.223280370236022 0.224247438768074 0.221290761046971 0.234916843170178 0.219904276828218 0.221662371038952 0.241334278460633 0.219889069477314 0.221778601245152 4 4|0 -|/ 2461960 2463524 2462850.5 2461672 2464141 - gene protein_coding_gene FALSE TRUE AT4G04870.1 CLS (CARDIOLIPIN SYNTHASE); cardiolipin synthase/ phosphatidyltransferase Cardiolipin synthase. similar to PGPS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE+SYNTHASE+1), CDP-alcohol phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT2G39290.1); similar to Os01g0789100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044486.1); similar to CDP-alcohol phosphatidyltransferase/Phosphatidylglycerol-phosphate synthase (ISS) [Ostreococcus tauri] (GB:CAL56910.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.233663757553005 2.24794419577366 0.0532119471550826 1 2.81281349144572 9.64935694665892 0.233663757553005 0.114342814745154
AT1G50670_at 8.54211899268114 8.74835085442385 8.98922672539585 9.01556167544711 9.4005468054462 9.07763146453413 9.11663082423603 9.13685449542087 9.0031009344621 8.80356682278217 9.08837932542415 9.0142978950179 9.1321902280679 9.09229733351734 8.869253610231 9.02642188677354 8.71570966228856 9.06419144100373 8.79593462092355 0.128244330389495 0.121027741237118 0.132128504639547 0.124595996613515 0.126527214646299 0.136094413961179 0.126526678831167 0.122524763077958 0.139471621810382 0.127299119761558 0.124994290452836 0.124614299071833 0.122859689908994 0.130333003737626 0.129197062136304 0.124452813277617 0.129698656227019 0.132349980101042 0.130733743662090 1 1|0 -|/ 18778787 18780160 18779224.571 18778524 18780627 - gene protein_coding_gene FALSE TRUE AT1G50670.1 OTU-like cysteine protease family protein similar to Myosin class II heavy chain (ISS) [Ostreococcus tauri] (GB:CAL55371.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.183780711374965 2.24729085385144 0.0532672871842529 1 2.81188566283603 17.9373036291214 0.183780711374965 0.066554858396319
AT4G16360_at 8.02550940888354 8.0314836644237 7.8056492860438 7.92513725482359 8.29813552481397 7.92271629672468 8.47247390060959 8.27789252205618 5.9340553674363 7.26629703112688 7.12826045314989 7.35338711133929 7.34130054457416 7.14407682918917 7.08285998662655 7.40407614444241 8.14533134045115 7.16755498041842 7.04081681583945 0.194613949822055 0.194613949822055 0.198863040093368 0.194894675513155 0.194699059550779 0.199472683716519 0.196157332365170 0.194613949822055 0.215606569774145 0.199771012927520 0.205412387048809 0.195507311612448 0.203167765766576 0.204957245651453 0.201644951008142 0.198191287610581 0.218406559931048 0.201332388241887 0.204244550248559 4 4 + 9245984 9246817 9246606 9245139 9247270 + gene protein_coding_gene FALSE TRUE AT4G16360.1|AT4G16360.2 5'-AMP-activated protein kinase beta-2 subunit, putative|AMP-activated protein kinase Identical to SNF1-related protein kinase regulatory subunit beta-2 (AKIN beta2) (AKINB2) (KINB2) [Arabidopsis Thaliana] (GB:Q9SCY5;GB:O23481); similar to 5'-AMP-activated protein kinase beta-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT5G21170.1); similar to AKIN beta2 [Medicago truncatula] (GB:AAO61677.1); contains InterPro domain 5-AMP-activated protein kinase, beta subunit, complex-interacting region; (InterPro:IPR006828) 0.192434617790627 2.24727870897787 0.0532683164293249 1 2.81186841602306 15.1413308965848 0.192434617790627 0.0760485320864197
AT4G15630_at 8.75963150814063 9.02819316902937 8.60963585815897 8.92263267029726 9.60844547175665 8.93426557100297 10.283931795183 10.2066292176248 8.80648784738026 9.51149622220312 9.52903038738634 9.39730752288029 9.4223602757109 9.2691634209082 8.94737646018813 8.81858486093339 8.84563244765515 9.12172245028695 9.10648845325988 0.172702090629304 0.154111265700326 0.176735557423874 0.163128620966308 0.156576725855215 0.170428195781357 0.161679624363172 0.158064528147635 0.161853503129075 0.155608951143264 0.153749828877329 0.153749828877329 0.158204065533278 0.158245311871466 0.162906636127805 0.153749828877329 0.164173940425668 0.156518237832062 0.155229404603289 4 4|0 +|/ 8917648 8918628 8918264.6 8917428 8918850 + gene protein_coding_gene FALSE TRUE AT4G15630.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G15620.1); similar to Os01g0363300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043031.1); similar to hypothetical protein MA4_106O17.50 [Musa acuminata] (GB:ABF69990.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.261722571197288 -2.24658182924515 0.0533274079885339 1 2.81087881177730 18.4493646922449 -0.261722571197288 0.137421813638252
AT4G15660_at 4.93812875190091 5.79032618051726 5.26192124140396 5.74440732328832 6.40379827036701 6.09661872266459 5.27831471547844 5.91588672663199 7.38183222328052 7.57938489641771 8.21689179050951 8.35866692165413 6.42998185422579 7.3658800660719 8.23788629687023 7.57311491532068 7.20017441168034 7.80741339368563 7.0253912544687 0.201647319627684 0.189312738221575 0.196999497700709 0.191495003739123 0.185055622973642 0.196047024081661 0.192447200014685 0.185055622973642 0.194244693037693 0.185055622973642 0.185055622973642 0.192699775397725 0.187491355542638 0.188798253125218 0.191990461021875 0.189565836443270 0.189199398821331 0.187500764866067 0.185055622973642 4 4 + 8925961 8926206 8926041.909 8925804 8926308 + gene protein_coding_gene FALSE TRUE AT4G15660.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S8 (AtGrxS8) (GRXS8) [Arabidopsis Thaliana] (GB:O23417); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15670.1); similar to Glutaredoxin-like family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99336.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.357952021997724 2.24601294350276 0.0533756943293803 1 2.81007100579782 13.1674855736855 0.357952021997724 0.209094913005428
AT1G45474_at 10.6972334785677 10.6792336940266 10.5003368752473 10.5259198950901 10.9304428724301 10.4510714862100 11.4637579386292 11.3167724649129 11.4533640825706 11.4064474573883 11.4620713166830 11.4675241461558 11.2790610239967 11.4725903147233 11.3170866381309 11.4172715197354 11.3584280645694 11.3777934051124 11.2285233191623 0.0769494216780637 0.073704349438435 0.0779952073962195 0.0758220806224414 0.0777176546223803 0.0784518317432955 0.0772514265494674 0.0736072038259666 0.082379044289593 0.0753222508893703 0.0777410697567835 0.0753937265341892 0.0776299953300113 0.082229340470328 0.0744621283096908 0.0736353403661452 0.0801585773394455 0.0759962108196725 0.0767520209767904 1 1|0 +|/ 17182121 17182840 17182591.6 17181742 17183246 + gene protein_coding_gene FALSE TRUE AT1G45474.1|AT1G45474.2 LHCA5 (Photosystem I light harvesting complex gene 5) Encodes a component of the light harvesting complex of photosystem I. similar to LHCA4 (Photosystem I light harvesting complex gene 4), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G47470.1); similar to light-harvesting chlorophyll-a/b protein of photosystem I [Chlamydomonas reinhardtii] (GB:BAD06921.1); similar to Os02g0764500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048216.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.203053297262542 -2.24539505147976 0.0534281891567151 1 2.80919365310175 22.1989743831453 -0.203053297262542 0.0869382502576212
AT3G03860_at 7.97934104158045 8.38814079902886 7.8629511322694 8.3761396259291 8.67387682120125 8.29754407711806 8.63616035615606 8.57848062042142 7.45387779171582 7.9727296936606 8.46831400882801 8.67412980608965 8.33809090928931 8.42242477682904 8.35245084905512 8.52865785559083 8.21063357852045 8.40981497354363 8.04910481846304 0.197300392775235 0.182993945652204 0.195636781954469 0.184602833316629 0.195579281533735 0.200769678867968 0.209513176985263 0.184966308791952 0.218710638581011 0.191936986203034 0.188814378936873 0.182993945652204 0.187343335241028 0.194578769625757 0.195532750853985 0.187554163014463 0.20451049376443 0.191319810643879 0.186205719388160 3 3|0 +|/ 993186 994288 994011.2 992135 994587 + gene protein_coding_gene FALSE TRUE AT3G03860.1 ATAPRL5 (APR-LIKE 5); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. similar to ATAPRL7 (APR-LIKE 7) [Arabidopsis thaliana] (TAIR:AT5G18120.1); similar to Thioredoxin domain 2; Thioredoxin fold [Medicago truncatula] (GB:ABE86406.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.253712184968928 2.24381749211092 0.0535624465683432 1 2.80695385168974 16.4744803238788 0.253712184968928 0.1312745911073
AT3G46830_at 7.45565354418406 7.63751502176093 7.34437374900542 7.28150025254579 8.00856923456153 7.68186144092921 7.78228508639865 7.7480883476577 7.37148678154292 6.44026898759714 7.56080657939448 7.4376331825095 7.56173089876048 7.3970671664659 7.38427523196284 7.07289283859871 6.90195081723227 7.1021295638741 6.767589309404 0.131816919369990 0.131816919369990 0.139889457015001 0.133723447200985 0.134104418808831 0.135394075715948 0.134732789545290 0.131816919369990 0.139583629729079 0.143389176789117 0.138107079151230 0.138867801419748 0.140073332386975 0.136464281242584 0.135104490582087 0.133384386328504 0.133434189337264 0.135195546380968 0.141639050625921 3 3 - 17257691 17258141 17257926.636 17257329 17259682 - gene protein_coding_gene FALSE TRUE AT3G46830.1 AtRABA2c/AtRab11A (Arabidopsis Rab GTPase homolog A2c); GTP binding Identical to Ras-related protein Rab11A (RAB11A) [Arabidopsis Thaliana] (GB:Q96283); similar to AtRABA2d (Arabidopsis Rab GTPase homolog A2d), GTP binding [Arabidopsis thaliana] (TAIR:AT5G59150.1); similar to Ras-related protein Rab11C (GB:Q40193); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.182859880630960 2.24315635894914 0.0536188109323347 1 2.80601526571963 14.6985270734793 0.182859880630960 0.0658822702909593
AT1G56500_at 9.62111770005307 9.61986319900157 9.52643209781722 9.35680338782682 9.56204521336108 9.38743970997992 10.5309558958220 10.2049558565095 9.85039835560226 10.1116711565189 10.2575479985548 10.1949160489139 9.95778497831929 10.2003093325390 10.1760695513964 10.4931966884825 9.97905177426101 9.98004060252657 10.0147730611986 0.0679554194877301 0.0660369032149835 0.0671536619786093 0.0683445318504204 0.0680870598604445 0.0681433581638156 0.0685085466015812 0.067715198487525 0.078819760617524 0.0737845739440251 0.0669421550301392 0.0660607824837737 0.0673445427489093 0.0676650420108817 0.0708285632119124 0.066903427897082 0.0709664554022532 0.0730958915659502 0.0709293350084792 1 1|0 +|/ 21163758 21170731 21167584.6 21163409 21170986 + gene protein_coding_gene FALSE TRUE AT1G56500.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G39970.1); similar to HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95582.1); similar to HAD-superfamily hydrolase, subfamily IA, variant 3 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95581.1); similar to Os03g0311300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049921.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Low-density lipoprotein receptor, YWTD repeat; (InterPro:IPR000033); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833); contains InterPro domain NHL repeat; (InterPro:IPR001258) -0.186729648249668 -2.24160012987241 0.0537517170915254 1 2.80380614131151 19.7997743723701 -0.186729648249668 0.0704097693007990
AT3G16310_at 5.9271035060858 5.93837276670695 5.52103034978058 5.85048470432019 6.37514425309288 6.45855657080317 4.91822795961964 5.51395770610892 5.8003742265966 5.23533664189503 5.50860691003279 5.51350188761986 5.91561644254221 5.72796135577858 5.87428187360537 5.33113157249429 5.59465039443328 5.24803888965437 5.73386872349355 0.219394364447288 0.219295584886976 0.220553253669325 0.221463946680297 0.223901804193714 0.224480122664252 0.21678758168994 0.220620197996700 0.222666901966314 0.218552543901971 0.223117353793866 0.221015511788637 0.219089179689960 0.221750454204523 0.21678758168994 0.220857369748916 0.219549333501685 0.216931611994774 0.218986175482652 3 3|0 -|/ 5526627 5527627 5527025 5526420 5528606 - gene protein_coding_gene FALSE TRUE AT3G16310.1 mitotic phosphoprotein N' end (MPPN) family protein similar to MPPN [Medicago truncatula] (GB:ABE80936.1); contains InterPro domain MPPN; (InterPro:IPR007846) 0.238126143321952 2.24120376564656 0.0537856195692927 1 2.80324353172061 11.4024014919473 0.238126143321952 0.118705750592562
AT3G61080_at 8.99134779057025 8.76755172238192 8.49318507554766 8.5154281020144 9.20207363462388 8.62525612485438 9.99452504539441 9.82901128099664 9.29405536635532 9.76742809178648 9.96205532298479 9.86947292561242 9.72431250469138 9.92695808285076 9.7202318468211 9.96701265658497 9.53973396417075 10.1431652331815 9.8220818665513 0.122764774069757 0.117014607152490 0.1268637251617 0.119750407134517 0.118294580582549 0.121730400616845 0.119081223991309 0.122493667357694 0.141126090137869 0.123188168469666 0.122844053401953 0.117805129944467 0.115485690068854 0.115485690068854 0.118223151801883 0.120632065329005 0.124766968502950 0.119114706336697 0.117222159686010 3 3 + 22619140 22619799 22619521.8 22618105 22620074 + gene protein_coding_gene FALSE TRUE AT3G61080.1 fructosamine kinase family protein similar to hypothetical protein alr5126 [Nostoc sp. PCC 7120] (GB:NP_489166.1); similar to Os03g0117800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048768.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Fructosamine kinase; (InterPro:IPR005581) -0.228930258347273 -2.24100861542437 0.0538023192291798 1 2.80296653704661 18.7945338097196 -0.228930258347273 0.110902615391566
AT2G18630_at 5.68943029165928 6.07152817824596 5.70322200393236 5.55413660832405 6.41789898258766 5.77859591314939 6.96650452254407 6.9887534405527 6.59320046329605 6.18893858208862 5.9414815054344 6.50953870499194 6.44956901626713 6.4217330483967 5.9715424571119 6.29536971021378 6.31199176002903 6.3398385048588 5.88341896210769 0.229409043757837 0.215734320746222 0.225394390947557 0.227394737181233 0.211659321639468 0.224499768651719 0.217074379420315 0.213911281951445 0.230499913169067 0.221038371108455 0.215090640999364 0.213310628981363 0.232699532017751 0.218278969588351 0.224828850331099 0.220012018790565 0.238779654919894 0.232136306310273 0.224957407704178 2 2 + 8088915 8089366 8089107.818 8087585 8089780 + gene protein_coding_gene FALSE TRUE AT2G18630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66675.1); similar to Protein of unknown function DUF677 [Medicago truncatula] (GB:ABE78510.1); contains InterPro domain Protein of unknown function DUF677; (InterPro:IPR007749) -0.253655156001647 -2.24082017990742 0.0538184491436256 1 2.80269907729382 12.3972516214130 -0.253655156001647 0.131502037860772
AT4G21430_at 5.9220812284612 6.22793449959256 4.86187037965109 4.66870488952376 4.90013882512679 5.10851452988118 4.87937185343788 4.76992954495997 5.22583594155835 5.55205681066015 5.66670957026597 6.39525038306326 5.5726853200834 5.73036197550919 5.73805240696559 5.4772365205751 5.13453266540431 5.18258821329725 5.5064251151831 0.201906003034035 0.199324854660292 0.201508292078148 0.199860605649782 0.193535107271826 0.206043455927815 0.196653125150612 0.195240249029633 0.204111928661875 0.206461237546996 0.190863136647713 0.196753142457105 0.190863136647713 0.199034167243055 0.194476989692924 0.190863136647713 0.203746096994163 0.196804005952505 0.194020660816128 4 4 - 11407863 11408778 11408280 11407815 11412170 - gene protein_coding_gene FALSE TRUE AT4G21430.1 B160; transcription factor similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G62310.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC; Zinc finger, C2H2-type [Medicago truncatula] (GB:ABD32344.1); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.190475474736111 -2.23938420687862 0.0539415239688188 1 2.80066103326935 10.6874597626773 -0.190475474736111 0.0746861071597745
AT4G18040_at 8.5459651376164 8.5147228865261 8.67640061278188 8.58221843222485 8.69138180415046 8.42207449791 9.00779234817697 8.93764340895673 7.75172798562387 7.51506916452269 8.1720086399467 8.28520035896784 7.65485427274426 8.20494832350141 8.59177500770328 7.80932331797593 7.56347356350602 8.21851303180556 7.4202954519529 0.172821020558706 0.170503182172825 0.172102614737114 0.176964075737787 0.169242252797057 0.184526710683413 0.178989296401793 0.176363782246836 0.175770758505321 0.176886355522339 0.170252448865887 0.168515141022423 0.174748155631512 0.168890723540729 0.174879606597626 0.174788277859526 0.175082929097603 0.170927878568034 0.183638013315457 4 4|0 -|/ 10016736 10017984 10017479.4 10016579 10018240 - gene protein_coding_gene FALSE TRUE AT4G18040.1 EIF4E (EUKARYOTIC TRANSLATION INITATION FACTOR 4E); RNA binding / translation initiation factor eIF4E protein. The cum1 mutation affects the local spreading of CMV within the inoculated leaf, delaying accumulation of cucumber mosaic virus coat protein. Identical to Eukaryotic translation initiation factor 4E-1 (eIF4E-1) (eIF-4E-1) (mRNA cap-binding protein) (eIF-4F 25 kDa subunit) (eIF-4F p26 subunit) (EIF4E1) [Arabidopsis Thaliana] (GB:O23252); similar to eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G29550.1); similar to eukaryotic translation initiation factor 4E; eIF4E [Pisum sativum] (GB:AAR04332.2); contains InterPro domain Eukaryotic translation initiation factor 4E (eIF-4E); (InterPro:IPR001040) 0.170817877633403 2.23846256695791 0.0540206624118913 1 2.79935309504452 16.4847130236523 0.170817877633403 0.0511298666424173
AT4G16660_at 8.20409940502921 8.19437729340668 8.72490270829404 8.85999189583698 7.72783954105178 6.7785867215336 6.49222140357947 6.27627656387213 6.4863263897208 5.89278917339381 5.96716833186553 6.73099544183317 5.39408343443191 6.04918014667693 6.4534795007353 5.55985662634793 5.33918184685982 6.14730930141815 5.86006615223287 0.226423970174820 0.229423278141516 0.226203212977406 0.221557149529466 0.215306463437069 0.233663212267878 0.219333452604285 0.220506307603801 0.216839897688693 0.221545817019096 0.215306463437069 0.216373592724535 0.217351836197277 0.222836605973043 0.218303463423151 0.215306463437069 0.241035214329016 0.215306463437069 0.215460704386571 4 0|4 /|+ 9380194 9381125 9380626 9376759 9381529 + gene protein_coding_gene FALSE TRUE AT4G16660.1 heat shock protein 70, putative / HSP70, putative similar to heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G11660.1); similar to PREDICTED: similar to CG2918-PA [Tribolium castaneum] (GB:XP_973490.1); similar to Os02g0710900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047898.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 0.303258070264579 2.23830475649378 0.0540342245999361 1 2.79912914931668 13.6747289751856 0.303258070264579 0.170092285137117
AT2G36250_at 9.10147459150928 8.91789465701108 8.73098051001158 8.73278519727405 8.89239588157161 8.56108918047015 9.35910368287987 9.2061889882356 9.09574232862554 9.189038426693 9.11814053455804 9.13813328886518 9.2049892633335 9.09388053193589 9.30204338529824 9.43474061947206 9.06788118118904 9.31799396254265 9.21318320449476 0.094012435259678 0.0947153918963566 0.100662084757447 0.095759276571896 0.0925893141403479 0.104388529165881 0.0943070983437423 0.0921882685317107 0.103044774854815 0.0938699307650373 0.0902488139109912 0.0918617369336415 0.0916771716507121 0.0973744813060325 0.0911745727055894 0.0902488139109912 0.0963337600818226 0.096927209061771 0.0941488901378386 2 2|0 -|/ 15204749 15205977 15205220.2 15204448 15207682 - gene protein_coding_gene FALSE TRUE AT2G36250.1|AT2G36250.2 FTSZ2-1 (FtsZ homolog 2-1); structural molecule Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division. similar to FTSZ2-2 (FtsZ2-2), structural molecule [Arabidopsis thaliana] (TAIR:AT3G52750.1); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE77845.1); similar to FtsZ protein [Gentiana lutea] (GB:AAF23771.1); similar to FtsZ-like protein [Nicotiana tabacum] (GB:CAC44257.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Cell division protein FtsZ; (InterPro:IPR000158); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280) -0.186557714141108 -2.23651973198084 0.0541878631350718 1 2.79659625583360 18.1255957523723 -0.186557714141108 0.0706885160130466
AT3G19900_at 7.97956116993469 7.82756371055379 7.8367144433012 7.7280482768446 8.58985219837429 8.1805824876951 8.60627104602615 8.69677800761194 8.17995998633796 8.15105061509504 7.87293524157062 7.70719042363773 8.0106956777363 8.15862690859191 7.61979286172907 8.33926035018957 7.73653174392538 8.01573076465086 8.05352908702413 0.155904326735345 0.161146942152347 0.157914918195664 0.161923434353494 0.163927898397867 0.159359010740498 0.167666150041317 0.166529599366803 0.161463163713957 0.161473004525320 0.157112982033273 0.158376886059312 0.160823348154741 0.156538202584733 0.155082463051487 0.153601197212003 0.162622142207464 0.163284749362365 0.162787321148829 3 3|0 -|/ 6923092 6924453 6923936.375 6922573 6925072 - gene protein_coding_gene FALSE TRUE AT3G19900.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD22944.1) -0.194664265813145 -2.23560774379162 0.0542665249165785 1 2.79530231541091 16.2110591138709 -0.194664265813145 0.0794177189835578
AT2G41770_at 6.25989739690773 6.71157166687731 5.688380803361 5.82773399679981 5.77138863217906 6.05796038895599 7.32426452373417 7.84188902124063 6.54345504573798 6.36111268307956 7.52260080925773 8.06438088392964 7.36115787495115 7.28742354829776 6.76427680195209 6.99934860430128 6.8826100228509 6.7989833352233 6.6464205522681 0.228978340175474 0.228978340175474 0.235626778944458 0.234835621684186 0.245631461902448 0.246876420335227 0.234976784587174 0.228978340175474 0.249391378505658 0.237844167011262 0.235888608314834 0.228978340175474 0.239591237971500 0.264054608417994 0.240342229905841 0.231056850345733 0.237278389613026 0.231514506187145 0.228978340175474 2 2 - 17431630 17432056 17431819.091 17431436 17434360 - gene protein_coding_gene FALSE TRUE AT2G41770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57420.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC16125.1); similar to Os07g0656400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060503.1) -0.252469027732865 -2.23524992445738 0.0542974186806955 1 2.79479466311734 13.2989327181523 -0.252469027732865 0.131052487149953
AT4G02630_at 6.4937451713995 7.1417749945857 6.99683278984424 6.96119124362161 7.12329682006423 7.09435590152559 8.51124763497282 8.67531513314445 7.66508283948575 8.06170289271608 8.36184593915257 8.01986341479933 8.727141586215 8.45852922500986 7.79455450743545 8.15330550727024 8.04585489133706 7.91073811416139 8.24533032883683 0.195165433156240 0.171734338057733 0.188259952494783 0.186905295959113 0.171734338057733 0.180864557773162 0.178089796685437 0.177216156031309 0.174820959958020 0.17658932386014 0.181055879485833 0.175059484857858 0.180316089022156 0.172921683195537 0.183320059960068 0.171734338057733 0.182150192552512 0.171734338057733 0.175110154781412 4 4 + 1152612 1153101 1152797.545 1151613 1153356 + gene protein_coding_gene FALSE TRUE AT4G02630.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01540.2); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.234163875134322 -2.23454014604523 0.0543587515690184 1 2.79378771668893 15.4620622120708 -0.234163875134322 0.115955495696775
AT3G48760_at 8.7050183476465 8.84643810400937 9.08296896782129 9.07776501690747 9.33221591989775 8.95295648580294 8.70231576033417 8.57102665323913 8.90935464990958 8.94575429602968 8.98145650748574 9.1253976610607 8.95414902629263 9.13394847555614 8.51165342848354 8.9508769076915 8.34770760492908 8.90456628672434 8.81749076350556 0.128682878722080 0.121615201763834 0.123036166819924 0.121953610527948 0.124979792943132 0.134478561298591 0.126848797824864 0.128383513807783 0.132952181591605 0.129323028496915 0.127543775909441 0.125120662906081 0.121482982913597 0.124824297258407 0.128649720680584 0.121482982913597 0.137993842628755 0.130992142595558 0.127787223573684 3 3 + 18088494 18088971 18088761 18086779 18089276 + gene protein_coding_gene FALSE TRUE AT3G48760.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT3G26935.1); similar to Os09g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063622.1); similar to Os08g0535400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062355.1); similar to P0482D04.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB89658.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.189064899381546 2.23418382376627 0.0543895675965561 1 2.79328223248793 17.7861311855038 0.189064899381546 0.0736451148729505
AT1G55255_at 6.79467652403602 6.98840244804835 7.25871912413379 7.2634655297229 7.36148857818722 6.58456677390718 7.08908190070271 6.80766763945067 6.73346261528767 6.90710640857517 5.98977093207624 6.05866258476629 6.10572995236607 6.38926370830322 5.71579782745869 6.66923427996127 6.33454687148416 5.99353008697219 7.05409239663044 0.227470054373687 0.226483502493641 0.227268730780622 0.226483502493641 0.23986475541312 0.245415507932491 0.241807311912038 0.239380236218181 0.234134037151850 0.235206248164116 0.226790611370786 0.226483502493641 0.226483502493641 0.228911959046879 0.232003615507907 0.226483502493641 0.244048827312471 0.230997593360802 0.232859093436463 1 1 + 20615260 20615926 20615623.545 20613786 20616314 + gene protein_coding_gene FALSE TRUE AT1G55255.1 HUB2 (HISTONE MONO-UBIQUITINATION 2); protein binding / zinc ion binding AT1G55250 and AT1G55255 will likely be merged in the TAIR8 genome release. The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. similar to HUB1 (HISTONE MONO-UBIQUITINATION 1), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G44950.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47998.1); similar to Os10g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065421.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.272025284822953 -2.23210957363356 0.054569298444924 1 2.79033996369155 13.5461523167342 -0.272025284822953 0.146877819047641
AT4G14870_at 8.79614937459983 8.86817579736522 8.71452960892136 8.41300537994237 8.99066787214811 8.76101515658358 9.11449005104497 8.97585736407956 9.39404272150717 9.2405553820648 9.19606668829358 9.06200242384626 9.10691181621585 9.07936288727412 9.42906937496462 9.20603809206241 8.81556518046985 9.02832583164461 9.1726213541588 0.126985748384024 0.127975508848134 0.127736493529771 0.129534534903202 0.124656078235949 0.128511094923411 0.127651143131478 0.128155214768810 0.135066108672904 0.127371800000965 0.135803990185522 0.125101348959332 0.128953642260106 0.133378490685071 0.128634600654509 0.126615874310622 0.128545346409488 0.135077138977594 0.126828823394506 4 4 + 8517264 8517719 8517498.182 8517187 8517897 + gene protein_coding_gene FALSE TRUE AT4G14870.1 protein translocase similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77495.1); contains InterPro domain SecE subunit of protein translocation complex; (InterPro:IPR005807) -0.186259504052024 -2.23017576820749 0.0547373872561931 1 2.78759736588635 18.0214817952973 -0.186259504052024 0.0709448264542667
AT3G07570_at 5.27231512851704 5.23838957575129 4.77798137243191 4.83803271453972 5.30037903600319 5.00318130456568 4.19397065553007 2.53317401437594 5.27956030983007 4.16610287044192 5.30488274634711 5.27613618906998 5.08791044136497 4.7541311738279 5.52467369037208 4.98158169713346 4.71738582642608 4.35330893321481 4.71942799876705 0.237941748579558 0.231991623689257 0.239979226222968 0.255899888525421 0.230670776513045 0.235004916134477 0.255032059871752 0.240368144488788 0.237601898665105 0.235419546483913 0.237072434775036 0.231365390477031 0.238917215188599 0.234429523161388 0.231796062996615 0.230670776513045 0.259315571959807 0.237730536352785 0.230670776513045 3 3|0 -|/ 2418241 2418635 2418419.667 2418055 2420302 - gene protein_coding_gene FALSE TRUE AT3G07570.1 membrane protein, putative similar to auxin-responsive protein -related [Arabidopsis thaliana] (TAIR:AT3G61750.1); similar to P0696G06.19 [Oryza sativa (japonica cultivar-group)] (GB:BAC06262.1); contains InterPro domain DOMON related; (InterPro:IPR005018); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593); contains InterPro domain DOMON; (InterPro:IPR013050) 0.474367770440707 2.23014210376402 0.0547403179269726 1 2.78754962556214 9.50552717366397 0.474367770440707 0.292218010613298
AT2G29180_at 7.56428447558665 8.04511784718264 6.53436746509881 6.40874342322897 7.96811250035599 7.76857522772653 7.913288622978 8.16193703867389 7.27257622278937 7.85869685399596 7.79011021973602 8.0909283520772 7.71446422230972 7.816418866209 8.41182712163385 8.22780394836853 7.79769491597892 7.42529926222205 7.65064769824364 0.205821566674055 0.186936936666191 0.204228102698428 0.195879463884659 0.203588255672353 0.200764320109304 0.197734840425371 0.195561566254895 0.209666273766184 0.194505976863999 0.193922615314082 0.189077658778981 0.196411609886849 0.197911810200655 0.196719863178708 0.186150142329035 0.202508132209583 0.192901190186003 0.205191707066895 2 2 + 12550178 12550753 12550396.1 12550100 12550912 + gene protein_coding_gene FALSE TRUE AT2G29180.1 similar to 80C09_19 [Brassica rapa subsp. pekinensis] (GB:AAZ41830.1) -0.217931285056065 -2.23002006570715 0.0547509432924346 1 2.78737656169682 15.2971993027256 -0.217931285056065 0.102178966548951
AT4G35020_at 7.50563630806971 7.83610808904205 7.23438885917966 7.22173808505499 8.20928435607056 7.85434119206572 6.42269252085119 6.88243719991322 7.1700162326494 6.32469184918893 6.8831217973612 7.06426380867628 6.68761171771538 6.8546567670128 6.84850856734928 7.01020584731235 6.70388391078117 6.63075381486643 7.01629623675459 0.234918163368921 0.230849013960332 0.241550291953364 0.240528667862513 0.231245970575733 0.232869560509737 0.222550185782458 0.222200259950857 0.243147424230805 0.238167305812724 0.222512195749344 0.222900819278545 0.235651436046183 0.24117198079409 0.230170006911031 0.222200259950857 0.226460093789565 0.230429505687917 0.236535623822848 4 4|0 +|/ 16673213 16674464 16673838.556 16672944 16674776 + gene protein_coding_gene FALSE TRUE AT4G35020.1 ARAC3/ATROP6/RHO1PS/ROP6 (rho-related protein from plants 6); GTP binding / GTPase A member of ROP GTPase gene family; Encodes a Rho-like GTP binding protein. Identical to Rac-like GTP-binding protein ARAC3 (GTPase protein ROP6) (ARAC3) [Arabidopsis Thaliana] (GB:Q38912;GB:P92989;GB:Q84W42); similar to ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) [Arabidopsis thaliana] (TAIR:AT2G17800.2); similar to rac-like small GTP binding protein [Brassica rapa] (GB:AAB97458.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras small GTPase, Ras type; (InterPro:IPR003577); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.233296966488538 2.22952344467689 0.0547942030697846 1 2.78667231462190 14.2320169354886 0.233296966488538 0.115664934394332
AT1G30540_at 6.47176041994053 5.8878486243164 6.42371849142909 6.08593242296082 6.37717789632411 5.6247781028124 5.79225230862215 5.44697673359336 5.8824573131946 5.41165202629629 5.71750353455628 5.81306302243309 5.65923555983425 6.10430669499421 6.05842409423532 5.86604004556691 6.08790853866101 5.91466591408603 5.16860367406334 0.222175844865932 0.216042991584616 0.235011076352793 0.212475322744645 0.217474523705019 0.221123183737077 0.211952289100677 0.209725189479545 0.215356069625 0.211687982204446 0.213272806199461 0.209083981468163 0.209044660430685 0.206649774890175 0.207184591709205 0.208877249658146 0.221910588988261 0.215861367931159 0.209248683385950 1 1|0 -|/ 10817097 10818175 10817601.6 10816756 10819344 - gene protein_coding_gene FALSE TRUE AT1G30540.1 ATPase, BadF/BadG/BcrA/BcrD-type family similar to Os09g0133700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062632.1); similar to hypothetical protein DDBDRAFT_0186012 [Dictyostelium discoideum AX4] (GB:XP_638627.1); similar to Os07g0147700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058888.1); contains InterPro domain ATPase, BadF/BadG/BcrA/BcrD type; (InterPro:IPR002731) 0.321632313895655 2.22784499603666 0.0549406592147185 1 2.78429236020371 11.7089128400318 0.321632313895655 0.184802051183770
AT3G24050_at 5.8105662396621 6.0306984122005 5.43914919263948 5.5462464401612 6.58205402256224 5.50639017566522 6.21530943588764 6.44291630861912 6.08202948226532 5.70667517147144 7.55034694981744 7.388073086054 7.15587202184084 7.97532750159766 6.74096718982604 7.25535510249403 6.69958306442869 5.66908001141805 6.29301525746478 0.20127721845974 0.192135133659127 0.199634045674374 0.194832716018875 0.189933109486104 0.200428941322734 0.190688260877322 0.188760695037137 0.210416828453131 0.206309066723182 0.198327590821646 0.20085470342574 0.196259484527758 0.205120359490547 0.197180644077269 0.191593309238267 0.20650987818409 0.189630783397652 0.192865601295692 3 3 + 8686894 8687424 8687208.727 8685880 8687684 + gene protein_coding_gene FALSE TRUE AT3G24050.1 GATA transcription factor 1 (GATA-1) Identical to GATA transcription factor 1 (AtGATA-1) (GATA1) [Arabidopsis Thaliana] (GB:Q8LAU9;GB:O49740); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT3G51080.1); similar to AG-motif binding protein-2 [Nicotiana tabacum] (GB:BAC98492.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.335336502099389 2.22698603657779 0.0550157584623454 1 2.78307452874652 12.4874490715922 0.335336502099389 0.194929436546819
AT3G25040_at 8.93984512636728 8.84985498004986 8.40831703029779 8.52442768328136 8.7965070691292 8.72951260146398 8.80207240908168 8.86043006941491 7.9130677675607 7.8052814690452 8.34011908810433 8.64719578852444 8.31079359753598 8.36251819173948 8.74614297736838 8.16081161128436 7.99462221094099 8.18772414601989 7.62355917062785 0.18654505156054 0.181118683934014 0.185847194805233 0.188439081099828 0.18038994957291 0.181902935041285 0.185489757813466 0.180302844514825 0.193443074223572 0.186613181167764 0.191075087496122 0.183462967485572 0.177976892890515 0.208840934266384 0.186754843654984 0.181258458760978 0.190407912385925 0.180949141448904 0.194917013599274 3 0|3 /|+ 9124927 9125902 9125388.8 9124311 9126305 + gene protein_coding_gene FALSE TRUE AT3G25040.1 ER lumen protein retaining receptor, putative / HDEL receptor, putative similar to ERD2 (ER lumen protein retaining receptor 2), receptor [Arabidopsis thaliana] (TAIR:AT1G29330.1); similar to ER lumen protein retaining receptor (HDEL receptor) (PGP169-12) (GB:Q9ZTN2); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) 0.157372632754896 2.22588941019228 0.0551117840595 1 2.78151986102101 16.8010594147279 0.157372632754896 0.0297099052278115
AT1G53320_at 10.4599812008149 10.6300940941164 10.2280216272095 10.2370452231333 10.4944381532953 10.4643572274500 9.59502146582697 9.88796009393784 9.93161422118044 9.81769042552324 10.0907794716325 9.94051237615666 10.0039567883272 10.0432805990286 9.7669761747116 9.93194990190923 9.72700982953078 10.0715514446550 9.67626010053136 0.0779099723378835 0.077287509654739 0.0796089325189519 0.0793109942060184 0.0800875006124045 0.079736259297835 0.0785307777857615 0.0810261450433287 0.0813909801950826 0.0780578786496339 0.0776881394271184 0.0777557497265176 0.0760438731646381 0.0801400314548467 0.0778554293285046 0.0752758657839902 0.0835124858954881 0.0755698574041258 0.0779925434008295 1 1 - 19894906 19895376 19895078.455 19894682 19897172 - gene protein_coding_gene FALSE TRUE AT1G53320.1 AtTLP7 (TUBBY LIKE PROTEIN 7); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP3 (TUBBY LIKE PROTEIN 3), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G47900.2); similar to Tubby; Di-trans-poly-cis-decaprenylcistransferase; Cyclin-like F-box [Medicago truncatula] (GB:ABD32973.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) 0.175590917465136 2.22481959226075 0.0552056213024991 1 2.78000333742163 20.1273767135508 0.175590917465136 0.0588736248608576
AT4G35570_at 7.09357903263982 7.40647945725095 7.52683358659625 7.3270991664923 7.6604036640184 7.24296743211588 7.10935512424084 6.60757003357048 6.6630796255145 6.57205502609157 6.78918496733413 6.94914988291406 6.70178450405709 7.05308167674689 6.6346389977972 7.21595713237024 6.73244467636831 6.98885845279966 7.07011365725246 0.188888051370876 0.192857104746997 0.195701771172857 0.188898492816282 0.190303124785114 0.203177904935446 0.195518930242714 0.191424753223206 0.191146645250691 0.193950832365546 0.18918589153692 0.185382697769022 0.184434276512403 0.186382532909820 0.183892643279458 0.183038333572168 0.193109447117022 0.19697059030773 0.196996983881733 4 4|0 -|/ 16887519 16888144 16887834.571 16887170 16888361 - gene protein_coding_gene FALSE TRUE AT4G35570.1 HMGB5 (HIGH MOBILITY GROUP B 5); transcription factor Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Cannot be phosphorylated by CK2alpha. similar to HMGB4 (HIGH MOBILITY GROUP B 4) [Arabidopsis thaliana] (TAIR:AT2G17560.3); similar to HMG1/2-like protein (SB11 protein) (GB:P26585); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.249900741862896 2.22453793836601 0.0552303522536386 1 2.77960410086421 14.0725627567413 0.249900741862896 0.129945708725712
AT2G17800_at 7.44870086827491 7.31519616929218 7.25769052989822 6.62111465161492 7.27239037380806 7.14131067009662 7.75707230547451 7.94655914034276 8.02425913211194 7.66353652540789 7.9711011410587 8.33752516138818 7.52007331176857 7.88539638313828 8.09651107203752 8.06717148355644 7.57947943022633 7.58682900999897 7.74557937350516 0.23770677165448 0.214637051186312 0.224049610213673 0.211765332841582 0.208865325616269 0.228475320806067 0.215683124131722 0.222228257075774 0.221865417107019 0.22571362565908 0.213747976601345 0.214134861155883 0.211847370251806 0.216895145073948 0.211452590809588 0.214486688371199 0.227006304509669 0.215715458436923 0.222094838787917 2 2|0 +|/ 7747416 7748997 7748349.222 7746938 7749238 + gene protein_coding_gene FALSE TRUE AT2G17800.1|AT2G17800.2 ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3); GTP binding|ARAC1/ATGP2/ATRAC1/AtROP3/RAC1/ROP3 (Rho-related protein from plants 3) A member of ROP GTPase family. Rac-like GTP-binding protein ARAC1/ATGP2. Encodes a geranylgeranylated GTP binding protein. Involved in the auxin-activated 26S proteasome-dependent Aux/IAA proteolysis pathway. Identical to Rac-like GTP-binding protein ARAC1 (GTPase protein ROP3) (ARAC1) [Arabidopsis Thaliana] (GB:Q38902); similar to ARAC6/AtROP7/RAC2 (rho-related protein from plants 7), GTP binding [Arabidopsis thaliana] (TAIR:AT4G35950.1); similar to Rac-like GTP-binding protein RHO1 (RHO1Bv) (GB:Q39435); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.237184850343337 -2.22446027473513 0.0552371735194012 1 2.77949401649977 15.1908222808444 -0.237184850343337 0.11941267165107
AT3G18370_at 8.90134058571043 9.02459575307912 8.85431634588392 8.88415896106436 9.22343336655352 9.00361441870198 8.18277855834274 8.18832422178891 8.38319086416572 8.3705942062881 8.49146348719983 8.70071442368976 8.29592131773008 8.43112631445296 8.07908085205768 8.30883688485723 7.77383690917394 8.31207233600425 8.4058937535861 0.140117267577319 0.136115812345308 0.140069704652886 0.135968149245135 0.144591206884656 0.139448083919960 0.137874447666353 0.137688687484564 0.160383793957052 0.135146685140936 0.135562953532574 0.13892406228228 0.147123247659487 0.141983777628666 0.139612339810961 0.134028241733709 0.149785735865367 0.145561261495152 0.140888358163415 3 3 + 6309785 6310211 6309976.455 6305981 6310626 + gene protein_coding_gene FALSE TRUE AT3G18370.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G11100.1); similar to NtermTM-C2Type3.1 protein [Physcomitrella patens] (GB:CAL64987.1); similar to Os01g0128800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041914.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.164846475476531 2.22334827433748 0.0553349325592432 1 2.77791789013603 17.1256658632201 0.164846475476531 0.0439277856463307
AT3G60350_at 5.17918205998809 5.29015419367109 5.21193513140603 5.23327208739483 5.34206136079406 5.55553419889698 5.33269972481112 5.13798598671218 4.36044754529608 4.591616216862 4.96663300263872 4.92285720814632 4.84731198299566 4.56388918878913 4.57091558746157 4.71205283647359 4.83957842080658 4.27941576074093 4.45972582500956 0.187500868956864 0.192795561300551 0.194644414854654 0.19310820842079 0.190331749556852 0.194403279321729 0.187897657154771 0.186546465111615 0.201103902336027 0.193550808792548 0.192363954851569 0.190181794097995 0.188416113839047 0.192168680721516 0.190990610212332 0.186448456334274 0.189224030548751 0.201658399555413 0.195998723992236 3 3|0 -|/ 22317864 22318487 22318073.1 22317463 22322161 - gene protein_coding_gene FALSE TRUE AT3G60350.1 armadillo/beta-catenin repeat family protein / F-box family protein ARABIDILLO-2 and its homolog, ARABIDILLO -1, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-2 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-2-overexpressing lines produce more lateral roots than wild-type seedlings. similar to armadillo/beta-catenin repeat family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT2G44900.1); similar to Os10g0563200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065399.1); similar to putative arm repeat protein [Oryza sativa] (GB:AAG60190.1); similar to armadillo/beta-catenin repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47988.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.171465211389018 2.22268847601979 0.055393017796387 1 2.77698277587423 9.87706723174052 0.171465211389018 0.0536899612456753
AT1G14710_at 5.7629293456704 5.89198317947978 5.24043576593411 5.56060719172465 5.93905563256542 5.55356824120332 6.00812779865915 5.49490100977185 5.12910575981432 5.80012516238413 6.02786460343802 7.22808958953404 5.20314038548737 5.59142363146627 7.32954386438755 6.52482166978269 5.7858416275353 5.68232460411267 5.46734148207473 0.21561062524475 0.216100952691691 0.225138845514320 0.214901425245124 0.215317857233541 0.217174249023605 0.218427137197702 0.213636863951079 0.216048053156290 0.211726878363666 0.211726878363666 0.212390309768486 0.214911744534715 0.223366677946610 0.220737299829477 0.215524308459191 0.218070235405439 0.217526654459152 0.214926393175295 1 1|0 -|/ 5062173 5062827 5062496 5061861 5065173 - gene protein_coding_gene FALSE TRUE AT1G14710.1|AT1G14710.2 hydroxyproline-rich glycoprotein family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02940.1); similar to hydroxyproline-rich glycoprotein family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94870.1); similar to Os03g0238800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049502.1) 0.245019243335922 2.22250566328598 0.0554091223076834 1 2.77672368961572 11.5000287114889 0.245019243335922 0.126124311877771
AT2G21240_at 9.43678079499658 9.88989308856966 9.72232993485043 9.86157261792581 10.2028828657508 9.9779619347166 9.49164202293337 9.63902480892408 9.4949525421703 9.12658765263022 9.4935920665861 9.47515178503397 9.49772873408515 9.44844735299101 9.15674214056422 9.4250118723035 9.40729991125943 9.37705160976678 9.33839257617006 0.122626435659669 0.118120420942881 0.120121516324334 0.117442781108534 0.117537847411117 0.122384983662535 0.116280462609628 0.120483114247643 0.124855499164038 0.123589754510999 0.117686851859277 0.118970335236149 0.118431457768442 0.123242361316697 0.129423125245394 0.116433856715468 0.133895040096917 0.127794915543383 0.124188300372211 2 2 - 9108598 9109171 9108881.636 9108394 9110127 - gene protein_coding_gene FALSE TRUE AT2G21240.1|AT2G21240.2 ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4); DNA binding / transcription factor|ATBPC4/BBR/BPC4/BPC4 (BASIC PENTACYSTEINE 4) similar to ATBPC5/BBR/BPC5/BPC5 (BASIC PENTACYSTEINE 5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G38910.1); similar to GAGA-binding transcriptional activator [Medicago truncatula] (GB:ABL10371.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.208501126602619 2.22082722036345 0.0555571969652061 1 2.77434515158690 19.1428138957821 0.208501126602619 0.094312471577597
AT1G32310_at 5.78708383802538 6.40668601125215 5.76476818057556 6.32375852717465 6.8927902532136 6.37072846065488 6.12925574519333 6.39011999465432 5.45094165669136 5.57133677737797 6.18174084008795 6.15024397643927 5.98548408418311 6.40376475174338 5.20975779461193 6.08489911550746 6.40436644771114 5.81910502691762 5.69327028499846 0.241118817454237 0.241264571896668 0.245683971118419 0.240922764705826 0.2454638807085 0.260318425553614 0.242028975485338 0.241344711747171 0.257606867052802 0.24752063312564 0.251101178466576 0.250276850017938 0.249161722668425 0.248693464056292 0.261890378928657 0.241656151036199 0.248363621866110 0.244779373999158 0.245318473863034 1 1|0 +|/ 11653611 11654494 11653926 11653544 11654774 + gene protein_coding_gene FALSE TRUE AT1G32310.1 similar to unknown protein [Oryza sativa] (GB:AAL67597.1) 0.308897819875509 2.21959939566151 0.0556657641657407 1 2.77260540502575 12.0590337901794 0.308897819875509 0.176225034611732
AT1G05430_at 7.39326450985674 7.61047560517302 7.65978803327008 7.53609387196846 7.76073282604672 7.488806483012 8.02110533636317 7.1432528096114 6.71651814041794 7.00837791522092 7.50782065247641 7.30821957495577 6.9180200382413 7.21525704425616 7.41979366503472 7.5133907114986 7.49591031914702 7.30270261190726 6.7260618255441 0.207157118124244 0.202203671801514 0.217048610560869 0.206555552292352 0.213401858165359 0.215966421961738 0.203350555346668 0.209679898916080 0.221733498528128 0.213904929892928 0.204235245676857 0.212571685725717 0.214229108294215 0.221554797956649 0.2048140642762 0.208538587991843 0.217215852363778 0.218369907671502 0.214152838400211 1 1|0 -|/ 1594241 1595013 1594651.3 1594056 1595817 - gene protein_coding_gene FALSE TRUE AT1G05430.1 similar to hypothetical protein MtrDRAFT_AC135320g13v1 [Medicago truncatula] (GB:ABE82965.1) 0.293742052559283 2.21954392556732 0.0556706738933376 1 2.77252681188360 14.6527525782047 0.293742052559283 0.164815820917094
AT2G19710_at 5.19113261356797 5.91947156801774 6.26804805982738 6.11277372836878 4.59519308347824 5.17841204981562 4.77398700145133 4.6064485354207 5.1786132331012 4.61175583994284 5.21757890007387 4.93770112201062 4.75244817460982 4.60006347179647 5.02999375457205 5.16919329970848 5.00100542433998 5.02916569012192 4.58490657162564 0.232304530492173 0.238073572342046 0.235468808926729 0.236031801161925 0.231865167823400 0.235019786359066 0.236535610008665 0.239134204129108 0.235620501474895 0.231087986887275 0.232463175754808 0.230601319980397 0.233784017131264 0.237512682068383 0.230931526174011 0.237751253899336 0.238164774824432 0.230654639273717 0.230601319980397 2 2 + 8516312 8516859 8516589.909 8513212 8517163 + gene protein_coding_gene FALSE TRUE AT2G19710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29440.1); similar to MAPK activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82253.1); similar to Os01g0706400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044016.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.295615991094495 2.21951493789308 0.0556732397983668 1 2.77248574066885 10.2101344689322 0.295615991094495 0.166240713909329
AT2G45980_at 9.84660430196206 9.85369489155303 9.80638292758163 9.94410773060095 10.2967104259244 10.2268442375157 9.65745945695755 9.72986077852355 9.4940768462985 9.47251729875621 9.54946361604896 9.3028716028033 9.48641258259593 9.56701324055197 9.47616954709665 9.79537394246837 9.57720951997547 9.46358266063682 9.56540049923839 0.0978535388152182 0.0946606848647594 0.100778067409016 0.097650488578433 0.102328251084992 0.104632954024108 0.0976125138369515 0.0946606848647594 0.106341158344517 0.102495361342240 0.101071832114289 0.0946606848647594 0.100704316711736 0.099099345862932 0.0985736895102953 0.0946606848647594 0.101982925013908 0.100999143446867 0.101904029856395 2 2 - 18924775 18925446 18925088.545 18924425 18926182 - gene protein_coding_gene FALSE TRUE AT2G45980.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00355.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80179.1) 0.156601840373883 2.2160375891463 0.0559818908976724 1 2.76755959911654 19.4391715790540 0.156601840373883 0.0295420244876913
AT1G06830_at 7.95150766443913 8.05206201364916 7.04615531295115 7.27839271107028 8.13600307591114 8.3032751935398 8.58979547496364 9.07347187987875 9.3368656735251 8.31552273174233 9.77539706315398 9.00858932362893 8.80005311118418 8.76357647671028 9.51426029066166 9.68545483535438 8.89563418035009 9.37455940007677 9.12872400227746 0.118097794840701 0.118886779044033 0.153080317411353 0.13645721611384 0.120739152517218 0.118834300219789 0.118388378102581 0.115039141166410 0.120964090067122 0.120395923680692 0.119267402358914 0.114987864666154 0.121696677906858 0.124893961046613 0.11747114714459 0.11933985010641 0.132790759506163 0.114512686945962 0.118764700624963 1 1 + 2097235 2097456 2097340.091 2097150 2097654 + gene protein_coding_gene FALSE TRUE AT1G06830.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S11 (AtGrxS11) (GRXS11) [Arabidopsis Thaliana] (GB:Q9M9Y9); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT2G30540.1); similar to glutaredoxin 1 [Plantago major] (GB:CAH59431.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.212799784453087 -2.21530786261393 0.0560468752794402 1 2.76652602932631 17.1309469429612 -0.212799784453087 0.0988031824187829
AT4G34200_at 7.99781993814188 8.1250904731932 8.48461209693381 8.67930436736295 6.84167969321229 7.29760381448203 7.93039279286675 8.19478767102441 6.62983176154261 7.44480325770103 7.51888879094729 8.7611409365197 7.33659818616256 7.54209442025109 8.0715417196802 7.43814224106729 7.26975336192532 8.12125752669494 7.20642090085587 0.153046628139573 0.148655182056297 0.152909357422017 0.151011157385265 0.151919727854993 0.156317264722003 0.148655182056297 0.149620433859239 0.176212239299735 0.153733780232452 0.149641709220190 0.148655182056297 0.155683317352900 0.153027322380766 0.160994233568462 0.152948195305210 0.154071839632187 0.150196756271684 0.151271846617949 4 4 - 16374047 16374592 16374348.636 16373823 16376626 - gene protein_coding_gene FALSE TRUE AT4G34200.1 EDA9 (embryo sac development arrest 9); NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase similar to PGDH (3-PHOSPHOGLYCERATE DEHYDROGENASE), phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G17745.1); similar to D-3-phosphoglycerate dehydrogenase, putative / 3-PGDH, putative [Arabidopsis thaliana] (TAIR:AT3G19480.1); similar to D-isomer specific 2-hydroxyacid dehydrogenase, catalytic re (GB:ABE86334.1); similar to H0212B02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68268.1); similar to putative D-3 [Oryza sativa (japonica cultivar-group)] (GB:BAD37553.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain D-3-phosphoglycerate dehydrogenase; (InterPro:IPR006236); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) 0.213759557698712 2.2152112467153 0.0560554847851083 1 2.76638918944432 15.3694675832051 0.213759557698712 0.0996942557781358
AT3G61440_at 12.1403165398623 12.2163808192727 12.4054066881726 12.3698276445282 12.0076945902859 12.0215241834106 12.2855440624537 12.3988575361398 12.0659354700329 12.2957826789524 12.4960498343796 12.5229689865449 12.4198007712641 12.5217170212252 12.5661415192589 12.7198549736055 12.5028471828295 12.4937357853784 12.1249418685803 0.0575705596304009 0.0570694931916979 0.0580012978761048 0.0581942177805299 0.060452451482031 0.0573715171248422 0.0614986155799802 0.0598282094544045 0.0611396113472273 0.0619701349537154 0.0563322405744536 0.0563172056624819 0.0564659276174743 0.057745487715998 0.0564859822092987 0.0563172056624819 0.0616796485570309 0.0578266678748695 0.0583829905258335 3 3|0 +|/ 22747687 22748693 22748031.75 22746722 22748953 + gene protein_coding_gene FALSE TRUE AT3G61440.1|AT3G61440.2 ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1); L-3-cyanoalanine synthase/ cysteine synthase|ATCYSC1 (BETA-SUBSTITUTED ALA SYNTHASE 3;1) Encodes a cysteine synthase isomer AtcysC1. The isomer is however less effective in cysteine biosynthesis. It is involved in beta-cyanoalanine biosynthesis, an intermediate of cyanide detoxification pathway. similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.1); similar to Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula] (GB:ABE80163.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859)|similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.1); similar to beta-cyanoalanine synthase [Hevea brasiliensis] (GB:AAP41851.1); contains InterPro domain Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) 0.154504020311383 2.21519445294022 0.056056981422135 1 2.76636540405381 24.5769987655987 0.154504020311383 0.0245242601510538
AT2G31090_at 8.69293393420919 8.9737820901954 8.56407353524692 9.10657173535643 9.13522311341848 8.82236595350632 7.63672631105716 7.83488055054461 8.97663105800543 8.57704411059453 8.78087258808608 8.8656728245528 8.6636864996953 9.04801403720676 8.19500376484398 8.82141087038105 8.74558623528757 8.62648946610492 9.02171884393888 0.13114366607028 0.129163237304372 0.161627408523919 0.129957947821172 0.129163237304372 0.133737771528697 0.137530138207469 0.132651407845548 0.149324962770288 0.129163237304372 0.140338925603740 0.134577354087054 0.139179858653109 0.141977933534612 0.147651976102027 0.131968368065560 0.132829090699156 0.144748724537100 0.130253595977996 2 2|0 +|/ 13263360 13263648 13263545.6 13263215 13263788 + gene protein_coding_gene FALSE TRUE AT2G31090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20562.1); similar to hypothetical protein MtrDRAFT_AC135231g3v1 [Medicago truncatula] (GB:ABE82887.1) 0.241177613901990 2.2149127191761 0.0560820949940862 1 2.76596638354555 17.3842230062499 0.241177613901990 0.123625083451773
AT4G32130_at 6.06288277902541 6.887876071012 6.43109893416246 6.62831145046332 7.35166246690341 6.52243001385485 5.60666088461476 6.1487389447177 5.8519671306311 4.75884126679809 4.87784037763938 4.93640412525053 5.42065915896934 5.62321204517623 5.42792083141563 5.34828412643727 5.2676732805846 5.72316747121261 4.7878479931650 0.306900375574939 0.310112106443569 0.295275160243316 0.295275160243316 0.311596653022997 0.344534472698453 0.305812375803536 0.315017503850116 0.315638112183244 0.302179339326214 0.295275160243316 0.295275160243316 0.303102276179853 0.295275160243316 0.295867342093131 0.295275160243316 0.314885335682 0.302255301285425 0.295275160243316 4 0|4 /|- 15521416 15521465 15521437.333 15520037 15522599 - gene protein_coding_gene FALSE TRUE AT4G32130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25310.1); similar to Os06g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058183.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_794143.1); contains InterPro domain Carboxypeptidase regulatory region; (InterPro:IPR008969) 0.376047880028924 2.21442357719009 0.0561257231100344 1 2.76527363327761 11.6854730134028 0.376047880028924 0.225700821849553
AT2G33380_at 9.66477509644643 9.93679987915287 10.3169847065209 10.3910325088466 9.88305704408795 9.62942126015962 11.1566167299384 11.1906880403920 7.86658747414281 9.49122759815797 9.34183111817307 8.97935746732326 9.82332895517568 9.35626853908096 7.85926824969836 10.0332332203781 10.2867751487030 9.6074740153532 8.49590722350498 0.151964965521114 0.142652159814128 0.146809596684904 0.149548823698513 0.144390111103641 0.145413417207685 0.154181340472884 0.151171506230308 0.179843453133829 0.145232083104935 0.153148285000956 0.147603755304646 0.148258016276583 0.146286530175619 0.179648108612945 0.142652159814128 0.148737928908376 0.151223803948131 0.154606485413920 2 2|0 -|/ 14152063 14152962 14152566.6 14151907 14153547 - gene protein_coding_gene FALSE TRUE AT2G33380.1|AT2G33380.2 RD20 (RESPONSIVE TO DESSICATION 20); calcium ion binding Encodes a calcium binding protein whose mRNA is induced upon treatment with NaCl, ABA and in response to dessication. mRNA expression under drought conditions is apparent particularly in leaves and flowers. similar to ATS1 (ARABIDOPSIS THALIANA SEED GENE 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G26740.1); similar to Ca+2-binding EF hand protein [Glycine max] (GB:AAB71227.1); contains InterPro domain Caleosin related; (InterPro:IPR007736)|similar to Ca+2-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G29560.1); similar to caleosin [Sesamum indicum] (GB:AAF13743.1); contains InterPro domain Caleosin related; (InterPro:IPR007736) 0.180469300360898 2.21373958321805 0.056186786705473 1 2.76430497220984 19.2855966687786 0.180469300360898 0.0658910091234225
AT3G15220_at 5.5424641356833 5.20232039213242 5.12630960939766 5.1840710914528 5.46109448519727 5.42709105888427 4.74177983297706 5.10270379874633 4.69548064070589 5.36280616301635 5.45660149190512 5.56416621381227 5.24199189570231 5.20622123955599 5.0776708197316 5.42094604885948 5.62437379229613 4.71046480781374 5.06301489131795 0.213348446505554 0.226555078092835 0.22378531698541 0.212483888673863 0.212738940003762 0.215694664859148 0.227328093241742 0.215634796359894 0.214877120346623 0.215542302080517 0.217304092427643 0.212483888673863 0.221377318445384 0.212483888673863 0.221036772991634 0.221348914839027 0.242284067445014 0.225238650346907 0.214941772541705 3 0|3 /|- 5126912 5127847 5127314.778 5126604 5132313 - gene protein_coding_gene FALSE TRUE AT3G15220.1 protein kinase, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53165.2); similar to BnMAP4K alpha1 [Brassica napus] (GB:CAA08757.1); similar to putative MAP4 kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83751.1); similar to BnMAP4K alpha2 [Brassica napus] (GB:CAA08758.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.199847580855534 2.21366213151869 0.0561937053292602 1 2.76419529002281 10.3875985190870 0.199847580855534 0.0866062948369407
AT4G18010_at 7.06481960047912 7.29978685264443 6.73382707288622 6.59090742822092 7.00804060084169 6.25433191430041 5.21830174296701 4.92585427917798 4.56894299245946 4.77644149640011 5.03925205840416 4.12525576631778 4.43296236072166 5.00256561798259 3.73970271134744 5.09394289782576 4.7648901859119 4.40719608781618 4.3164212689084 0.250160902802321 0.254188114748757 0.256402290988307 0.264764382015196 0.260201020582701 0.250160902802321 0.258840405777046 0.255781544103653 0.255699503128650 0.252745588932645 0.250160902802321 0.250160902802321 0.253166723833188 0.258952705613697 0.262468531539212 0.250160902802321 0.255350734138133 0.268703837767352 0.251272876159416 4 4|0 -|/ 9991208 9992085 9991726 9991033 9994432 - gene protein_coding_gene FALSE TRUE AT4G18010.1|AT4G18010.2 IP5PII (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE II); inositol-polyphosphate 5-phosphatase inositol polyphosphate 5-phosphatase II (IP5PII) mRNA, Identical to Type I inositol-1,4,5-trisphosphate 5-phosphatase 2 (EC 3.1.3.56) (At5PTase2) (IP5P2) [Arabidopsis Thaliana] (GB:Q9FUR2;GB:O49700;GB:Q9SNF1;GB:Q9ZSC3); similar to inositol polyphosphate 5-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G71710.1); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE93059.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135)|Identical to Type I inositol-1,4,5-trisphosphate 5-phosphatase 2 (EC 3.1.3.56) (At5PTase2) (IP5P2) [Arabidopsis Thaliana] (GB:Q9FUR2;GB:O49700;GB:Q9SNF1;GB:Q9ZSC3); similar to inositol polyphosphate 5-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G71710.1); similar to IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I), inositol-polyphosphate 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G34120.2); similar to Inositol polyphosphate related phosphatase [Medicago truncatula] (GB:ABE93059.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.270685921723391 2.21170504375998 0.0563688070274624 1 2.76142403292054 10.9518117931299 0.270685921723391 0.147780773402317
ATCG00650_at 9.39340606410494 9.97820888830489 9.16305738742589 9.37287493583774 9.50874022805104 9.59396277124802 9.89736762452728 10.3861501893119 11.3245628951621 10.9244821177383 11.4177642251942 11.5763040612158 10.9319068487439 11.0744448983311 11.1008814535738 11.2892268585479 10.4638893848159 11.0089498092098 11.1085747985491 0.232928964219295 0.232477298235529 0.242807166280256 0.249069859824856 0.229974879370575 0.251526345304988 0.219934982483462 0.227756546001652 0.215420391118645 0.208623325036665 0.215380816453491 0.2145491609523 0.214139127783286 0.219880413791656 0.215044272533240 0.218079498645664 0.226830940520665 0.218199042890270 0.208623325036665 C C + 67926 68191 68060.364 67917 68222 + gene protein_coding_gene FALSE TRUE ATCG00650.1 chloroplast-encoded ribosomal protein S18 Identical to Chloroplast 30S ribosomal protein S18 (rps18) [Arabidopsis Thaliana] (GB:P56807); similar to Ribosomal protein S18 [Gossypium barbadense] (GB:BAF41269.1); contains InterPro domain Ribosomal protein S18; (InterPro:IPR001648) -0.257705011142021 -2.21023561191317 0.0565006306500822 1 2.75934361455435 20.7752847842367 -0.257705011142021 0.137596308881899
AT1G16570_at 6.8709374716464 6.36939321769226 6.76177557367267 6.72340767902538 6.72048329368408 6.74518067193818 6.16637104635216 6.18933497668596 6.02438937148764 6.2839322231906 5.96652878597 5.92336963685011 6.02503620504933 6.20222850761514 6.27691821178532 6.16744467741459 6.10942534685042 6.45257554764338 5.92813100169208 0.186726451592620 0.182619719813337 0.186495868310808 0.187173584971209 0.185713075690475 0.185490966188199 0.182619719813337 0.190255843710667 0.193797008078105 0.187166834692547 0.185704739911490 0.187371645607724 0.186758328638934 0.18915771916206 0.189718493873917 0.185604552679423 0.188845306736046 0.182827845986831 0.194574203037206 1 1|0 -|/ 5670904 5671724 5671428.556 5670570 5673593 - gene protein_coding_gene FALSE TRUE AT1G16570.1 glycosyl transferase family 1 protein similar to Myb, DNA-binding; Glycosyl transferase, group 1 [Medicago truncatula] (GB:ABE88776.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.200162979629865 2.21001368533607 0.056520566162302 1 2.75902943479387 12.6779896898475 0.200162979629865 0.0872435889021036
AT3G26000_at 8.24465750924398 8.5052194662729 8.53178783483378 8.3767260015305 8.81831684322642 8.1191941258004 8.59976297772449 8.68417901125621 8.65872319944919 8.62071547211767 8.27267790099579 8.1778472379016 8.53732320970305 8.03166363321139 7.40838996770482 8.27646284042958 8.47534572884813 7.80928108531885 8.45994116170464 0.176194859208683 0.170324766244435 0.179886613489801 0.181637922568921 0.178780119279706 0.179922073308154 0.170324766244435 0.170324766244435 0.182524749995613 0.174022042942947 0.172126183560343 0.174543258291156 0.170324766244435 0.182449872066297 0.176031033231117 0.174504170080633 0.191443933887529 0.177536753098389 0.173560711942448 3 3 - 9508297 9508977 9508598.545 9508015 9510495 - gene protein_coding_gene FALSE TRUE AT3G26000.1 F-box family protein similar to F-box family protein-related [Arabidopsis thaliana] (TAIR:AT3G27290.1); similar to H0811E11.8 [Oryza sativa (indica cultivar-group)] (GB:CAC09492.2); contains domain no description (G3D.1.20.58.140); contains domain F-box domain (SSF81383); contains domain F-BOX/LEUCINE RICH REPEAT PROTEIN (PTHR23125); contains domain N7-RELATED PROTEIN (PTHR23125:SF23) -0.251558933509816 -2.20954208386680 0.0565629527779755 1 2.75836181262451 16.8366890853717 -0.251558933509816 0.132681739383405
AT1G78240_at 9.18120259661914 8.99240797171675 8.57784937820377 8.51772639528682 8.79944299170953 8.8945873023086 8.19904222800302 8.64320607078284 8.27332172382783 8.40303345655474 9.05647093417421 8.95692050188698 8.9030829759171 8.81832115070076 8.85810402335843 9.09491743688577 8.64259183528876 8.31500694901005 8.45507814222722 0.130609973750222 0.130050774090571 0.128718198473165 0.131449392647635 0.137742715741002 0.134453036256087 0.136658076111960 0.130125173108381 0.133270605482387 0.138725912175723 0.126610665149112 0.132710219852736 0.130250178676473 0.128823691409741 0.137276710400653 0.122687698059375 0.140171986210599 0.138755130662022 0.131036534793088 1 1 - 29438088 29438741 29438512.455 29437722 29441377 - gene protein_coding_gene FALSE TRUE AT1G78240.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G13860.3); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G03480.1); similar to Os02g0755000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048160.1); similar to Putative methyltransferase, putative [Medicago truncatula] (GB:ABE90949.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) 0.198484667564784 2.20798283330093 0.0567033178826368 1 2.75615465926432 17.3295938252151 0.198484667564784 0.0857611393275022
AT3G05010_at 8.29494391074732 8.71348020769268 8.480907701652 8.5176900087465 9.07378923603755 8.47845962601237 8.29861185399954 8.2188549607193 7.70056179546435 7.39398583476466 7.87406230482849 7.88644478646669 7.91108336730171 7.9595641123624 7.46980970861388 8.0670643433655 7.22076706494778 7.53567286389642 7.43028672422107 0.174856672523403 0.171608041356541 0.182946175309164 0.170677118477674 0.174475853806411 0.183509117951989 0.183329232473607 0.171657971241553 0.183072622097813 0.174486386987009 0.174882725256639 0.166069252728337 0.164701752699050 0.17184177963144 0.1762536899646 0.170387532355104 0.191505437402480 0.171408779600352 0.179776118300728 3 3|0 +|/ 1390286 1391440 1390851.4 1389455 1391681 + gene protein_coding_gene FALSE TRUE AT3G05010.1 transmembrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G27210.1); similar to putative expressed protein [Sorghum bicolor] (GB:AAM47585.1); similar to Os03g0756400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051317.1) 0.244259680322616 2.20768050989043 0.0567305729296759 1 2.75572674915458 16.1340105317623 0.244259680322616 0.126850848282184
AT1G66980_at 8.83584089558711 8.74441104361878 8.65290494777962 8.49217018394769 8.84888648969349 8.442710801209 8.29940494287372 8.10211077650208 8.13628669833887 7.79687745606515 8.3567048603195 8.62675649001363 7.70190049724923 8.35091840593488 8.31140898873643 8.25963826174105 8.09970599823158 8.12983657944488 7.91474521291606 0.145817875965037 0.14415091953682 0.143013467609427 0.150708388761303 0.14047364356067 0.146464174673256 0.141145957694529 0.140129419711330 0.150565450217712 0.149367022637072 0.144383435781614 0.138946080816389 0.153557557823967 0.141481142393226 0.139466734442098 0.139005951654263 0.149194364209392 0.144334893305985 0.142639531368454 1 1 - 25001154 25001605 25001425.545 25000972 25005624 - gene protein_coding_gene FALSE TRUE AT1G66980.1 protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66970.1); similar to MRH5/SHV3 (morphogenesis of root hair 5), glycerophosphodiester phosphodiesterase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26690.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); similar to B0806H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67272.1); similar to Os04g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053060.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.197015914390451 2.20628191794367 0.0568568264978131 1 2.75374732461408 16.6417609514759 0.197015914390451 0.0844426540734305
AT4G33210_at 8.16512288759243 8.368454522759 8.17957307980079 8.33038832325688 8.69862573670288 8.44597463208664 7.96230668909787 8.42178700743065 7.70819816933087 7.398871902955 7.95649974337377 7.82052987330422 7.8534546343847 7.80029035048505 7.61967566807819 7.95995521084565 7.9417375359919 8.02813696909631 7.7788418753047 0.189355260815201 0.169584576376732 0.182768511839718 0.175361472269708 0.176306512494169 0.169481198811763 0.181164642704477 0.173340899738094 0.182018252141089 0.179864062844386 0.164320894388683 0.168288492152477 0.178226867979999 0.167565818350441 0.182573465766369 0.173550989856856 0.186844272547922 0.166024878036494 0.181010179177953 4 4|0 -|/ 16015989 16017148 16016576.5 16015974 16020700 - gene protein_coding_gene FALSE TRUE AT4G33210.1 F-box family protein (FBL15) similar to F-box family protein (FBL3) [Arabidopsis thaliana] (TAIR:AT5G01720.1); similar to F-box family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47515.2); similar to Os10g0396400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064532.1); similar to Putative F-box protein family [Oryza sativa (japonica cultivar-group)] (GB:AAM01146.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.214060174286630 2.20624605908474 0.0568600671761474 1 2.7536965768808 16.0721152668701 0.214060174286630 0.100765338909997
AT3G50630_at 5.78914554604303 6.09588034963287 5.5840467392944 5.51743154570217 6.3478186568736 6.05651121575171 6.1687305231456 6.08373561159443 5.09600616275447 6.02463382800723 5.25641952032322 5.55963892874217 5.86835598682784 5.62881511644917 4.98271885257415 6.09003214850329 5.5358006150488 5.52065999129383 6.20108454651015 0.201172760432951 0.19685542027761 0.197091983748903 0.201220902314619 0.204799654322315 0.212580905764375 0.19685542027761 0.210332386471639 0.224172102498559 0.19685542027761 0.203922861960059 0.196970960799742 0.19685542027761 0.203082052551393 0.207765537198739 0.199074479909834 0.211186591125994 0.205107875896943 0.199149521575789 3 3 + 18811593 18812144 18811785.727 18811361 18812568 + gene protein_coding_gene FALSE TRUE AT3G50630.1 ICK2 (KIP-RELATED PROTEIN 2) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI), negative regulator of cell division. A member of seven KRP genes found in Arabidopsis thaliana. Differential expression patterns for distinct KRPs were revealed by in situ hybridization. Gene was isolated from a yeast two hybrid screen as an interacting protein of CDC2A. Recombinant protein has a strong kinase inhibitor activity in vitro. Transcript is expressed in all tissues examined but is differentially distributed from ICK1. Controls the onset of the endoreduplication cycle through inhibition of CDKA;1. The KRP2 protein abundance is regulated by proteolysis through CDKB1;1 phosphorylation. similar to ICK1 (KIP-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G23430.1); similar to cyclin dependent kinase inhibitor [Pisum sativum] (GB:BAB20860.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) -0.18826200115941 -2.20392946941446 0.0570698100455732 1 2.75041846603225 11.6200191855352 -0.18826200115941 0.0755533720003928
AT2G45590_at 7.86097902938098 8.27415782222044 7.18625417480363 7.45559459635844 7.55143210692257 7.64862195142717 7.23050924264343 7.82385739789497 7.74970949111105 7.47377875667796 7.49272912943807 7.93077703640274 7.57888000032818 7.6736207620207 7.58131480848176 7.4550648874719 7.15854259776819 7.8469164168986 8.0537831422146 0.169980168919273 0.170423134471427 0.178583425656797 0.172706187166871 0.174726074956723 0.190659532389565 0.178386552528523 0.169263845006387 0.191678135345846 0.173205930513958 0.173355979209329 0.171857374268611 0.177690560904017 0.177623418487108 0.170006388692285 0.170204707171493 0.187547711196885 0.174290143386805 0.174584865367376 2 2 + 18795393 18795773 18795577.182 18793732 18796062 + gene protein_coding_gene FALSE TRUE AT2G45590.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G51770.1); similar to Os03g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049573.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94994.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.253129962070133 -2.20291346660693 0.0571620382373656 1 2.74898097704487 15.3033363742994 -0.253129962070133 0.134579225452994
AT2G35020_at 6.38308445132484 6.71854492610803 5.76577548084028 5.59403014302445 5.95384094628912 5.4624594122526 3.67539794759752 4.27420962752169 6.59383316959402 5.66968041323977 5.49469575704862 6.42390377309941 4.84825894703354 5.04910573511134 5.9191236806929 4.99867007797557 4.04682932817433 5.28962456255829 6.43388388642108 0.251975555524619 0.24495714276847 0.25356169749996 0.244542592948417 0.243041638197182 0.239678121599106 0.240248829560836 0.238085700450794 0.257809091278963 0.243268258821088 0.237534976302734 0.234951678609902 0.246820534561184 0.248790976821015 0.238805570032265 0.234951678609902 0.248990896656583 0.249843675479225 0.2495274973198 2 2|0 +|/ 14766601 14767512 14767197.2 14763790 14767785 + gene protein_coding_gene FALSE TRUE AT2G35020.1 UTP--glucose-1-phosphate uridylyltransferase family protein Identical to Probable UDP-N-acetylglucosamine pyrophosphorylase (EC 2.7.7.23) [Arabidopsis Thaliana] (GB:O64765); similar to UDP-N-acetylglucosamine pyrophosphorylase-related [Arabidopsis thaliana] (TAIR:AT1G31070.2); similar to Os08g0206900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061242.1); similar to Os04g0613700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053857.1); similar to hypothetical protein CC1G_06565 [Coprinopsis cinerea okayama7#130] (GB:EAU92554.1); contains InterPro domain UTP--glucose-1-phosphate uridylyltransferase; (InterPro:IPR002618) -0.271236041454804 -2.20279269074040 0.0571730114704906 1 2.74881010635684 11.2240390197682 -0.271236041454804 0.149074457582084
AT1G07090_at 6.06086976168254 6.34362794525929 4.87760817676912 4.84161015398224 6.64543629478787 6.5099758730988 3.61918329621035 4.25154689249949 3.97535401332031 4.63953205564503 4.8597031607313 4.18420600684509 4.73298922557633 4.3723263685521 4.38227708218391 4.47069295776286 3.7486295350608 4.34830890809216 5.06739799524133 0.242227581771704 0.241009748420140 0.244898011514205 0.242586197282308 0.239466884599535 0.24918104497382 0.244794967627591 0.240764236373875 0.245424374124421 0.240421953354434 0.242036953841945 0.244149041003454 0.243012323704927 0.239576643361588 0.240793051070468 0.239883205420834 0.248559885337183 0.242845430506696 0.247109101639777 1 1 - 2174233 2174764 2174531.636 2173951 2174893 - gene protein_coding_gene FALSE TRUE AT1G07090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58500.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB68109.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) 0.238240475805806 2.20234899926556 0.0572133413611282 1 2.74818239867411 9.86780880445427 0.238240475805806 0.122304636472986
AT3G10860_at 10.9403512248321 11.0702879972866 11.4304911093652 11.406032189251 11.2534568262774 10.954704282355 11.1454398107771 11.1517048933583 11.1079534259766 11.0910805304448 11.2807991205397 11.3385683322403 11.1949491029833 11.1002266588979 11.2126653192892 11.3064680518592 11.1098903277598 11.2314241565195 10.9874729293354 0.0719027513141995 0.0715842977295957 0.0741096345404029 0.073607408966461 0.0707395678251797 0.0756684866052785 0.0704205784090613 0.0708293574995596 0.0821326412619033 0.0723516312837575 0.071764731715464 0.0710455790305733 0.0703209185147958 0.0806638832402442 0.0728165740366367 0.0725148731340938 0.0783993222320297 0.0709453946555618 0.0729347680462724 3 3|0 +|/ 3399880 3400495 3400032.889 3399741 3400746 + gene protein_coding_gene FALSE TRUE AT3G10860.1 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative similar to ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative [Arabidopsis thaliana] (TAIR:AT5G05370.1); similar to Ubiquinol-cytochrome c reductase complex ubiquinone-binding protein QP-C (Ubiquinol-cytochrome c reductase complex 8.2 kDa protein) (GB:P46269); contains domain Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) (SSF81508) 0.171965021045422 2.2015871339638 0.0572826573083305 1 2.7471046166575 22.3110799645278 0.171965021045422 0.0565478820830575
AT3G12350_at 7.24933518874595 7.41766834976774 7.44662809888374 7.2894092094734 7.548421739684 7.64674679721217 7.66340102261957 7.67178565780341 8.04739784005236 7.87251884631672 7.55261249143668 7.3567375565973 7.68629198884862 8.01913998946513 7.19810795504935 8.03087908389287 7.86876637063312 7.55929692221599 7.98048846749196 0.182532033550435 0.178606999856959 0.191396659915961 0.189428934383161 0.176930227632181 0.193477227781131 0.184808066053266 0.183952354974482 0.189019087131908 0.176915507619352 0.186228721884454 0.181770013977965 0.183595243534189 0.183583365437042 0.182183979184971 0.176661546143956 0.18675351272375 0.184865648548248 0.190282554361555 3 3 + 3932405 3933014 3932799.091 3931571 3933363 + gene protein_coding_gene FALSE TRUE AT3G12350.1 F-box family protein similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99041.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.162784383303566 -2.20022640814519 0.0574066641574181 1 2.74517983411515 15.3045648893843 -0.162784383303566 0.0433645953034367
AT1G49590_at 5.25132333976414 4.99895617221477 5.5804076411238 5.31754895983282 5.76758803778805 5.61104684845308 5.47131490210749 5.1935597634449 4.87058389576467 5.2321641610007 5.35522238582937 5.05851043023513 5.35263078518467 5.53670251590259 5.16905275693722 5.36024607235671 5.3017980343002 5.0620986970014 5.56719760863592 0.176447680602660 0.171132615584497 0.174794763963540 0.171392440593313 0.172582487025135 0.170949051987645 0.175386840886177 0.179287715688760 0.183966158671664 0.178529783288697 0.173039289446685 0.176212300948239 0.179771862056526 0.170949051987645 0.184352076191945 0.174269838703849 0.177841882200120 0.172509603851363 0.176118903396061 1 1|0 +|/ 18359133 18359904 18359675.8 18358454 18360310 + gene protein_coding_gene FALSE TRUE AT1G49590.1 formin-binding protein-related similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G54230.1); similar to Os06g0215200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057136.1); similar to hypothetical protein LOC506275 [Bos taurus] (GB:NP_001068719.1); contains InterPro domain Zinc finger, C2H2-type matrin; (InterPro:IPR000690) 0.195788407667298 2.19975107203599 0.0574500450560506 1 2.74450751463015 10.6478921738506 0.195788407667298 0.0837907977104522
AT2G43540_at 5.10879719407896 5.49223930834322 5.41728624019771 5.88610852466702 6.39480382535873 5.74415072579774 5.34711585366993 5.09980048512588 4.89637413636307 5.00364625809477 4.56226775401413 5.04799379144434 4.4090481634701 5.36652765629497 4.80681623044513 4.91006475929288 4.7725920614602 4.38969990359709 4.53907025292682 0.251403454443540 0.253525168208106 0.278701941284415 0.252100954627728 0.260938165580977 0.260303506025610 0.273970944069646 0.258969621941239 0.251403454443540 0.265848013279267 0.251403454443540 0.261232408399476 0.251403454443540 0.251571674884428 0.264754399862272 0.251403454443540 0.274504248339161 0.257448613878528 0.257656008436209 2 2 + 18079481 18079931 18079721.364 18079448 18080040 + gene protein_coding_gene FALSE TRUE AT2G43540.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91484.1) 0.284347596454136 2.19901894756676 0.057516924427173 1 2.74347204830791 10.3593660225535 0.284347596454136 0.159673904136387
AT4G32120_at 6.41042677017486 6.63375059523586 6.02622051973134 6.29926095407261 7.2880283183638 6.69318537582882 6.92817552263106 6.17262333859535 4.79818706853259 5.64292461467778 5.98487176650036 5.93119038135471 5.56110010255736 6.06415714276052 5.659299840641 5.92967728633146 6.18152544999109 5.16134619921276 5.26344806296936 0.210762694826196 0.20875647286609 0.209096542812469 0.205746646342172 0.205746646342172 0.210310424552944 0.208898928253996 0.210908202965225 0.222350213326993 0.207157632477295 0.205746646342172 0.205746646342172 0.213323310456099 0.205746646342172 0.2083329081137 0.205746646342172 0.211207000133519 0.218745578841961 0.210765858406008 4 4|0 -|/ 15517443 15518549 15517903 15516790 15519861 - gene protein_coding_gene FALSE TRUE AT4G32120.1 galactosyltransferase family protein similar to transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT2G25300.1); similar to Os06g0176200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056954.1); similar to beta 1,3-glycosyltransferase-like protein II [Oryza sativa] (GB:CAD44838.2); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.307361253890974 2.19874717910031 0.0575417698704444 1 2.74308769530789 12.0784585592768 0.307361253890974 0.177254092756320
AT2G19650_at 7.0044877893839 7.38656493869734 7.70067533027454 7.74758167673926 7.74848158509299 7.41418312918456 8.60001079241828 8.45963731915462 7.38389498571581 7.9265366111067 7.24349292829724 7.32139765606138 8.02150203006904 7.47956491024108 6.54803912508133 8.07934146641939 8.1241867139945 7.46641421352533 7.88693035463695 0.192048540786490 0.187215147289054 0.205700972389540 0.197152642906774 0.187244751494742 0.188609715524276 0.192615734280802 0.194796866647791 0.208306251762251 0.183106156220077 0.190240928996144 0.18905934356346 0.187074153442439 0.186687084473331 0.207158250867869 0.186011711036284 0.194283084341356 0.201628340118328 0.190910058141813 2 2 - 8500781 8501312 8501016.636 8500557 8502905 - gene protein_coding_gene FALSE TRUE AT2G19650.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G19660.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G37620.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G04680.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) -0.203453191474680 -2.19816532565535 0.0575949991729301 1 2.7422648315743 15.3916760022587 -0.203453191474680 0.0915135778622226
AT2G36240_at 7.65699705320725 7.81497358462051 7.86646356095468 7.86954771211144 8.47746390944171 7.78782642732798 7.9109645889986 8.0049587323326 7.46375300705672 7.40986709391593 7.73609435837278 8.32502359674331 7.92508060680608 7.86209114062804 7.85984698658196 8.12343987666442 7.6840302790757 7.44317162666242 7.76069313772987 0.160690155611815 0.157769679711581 0.168084609524337 0.158740659167676 0.161811017264132 0.167753565769904 0.163407771130812 0.162389644483545 0.175987332766606 0.172593182427714 0.161840079683618 0.157769679711581 0.157769679711581 0.169381682620745 0.176855923012061 0.158533120157705 0.168204727325501 0.162528174099153 0.165002245125807 2 2 + 15203672 15204176 15203903.091 15202732 15204343 + gene protein_coding_gene FALSE TRUE AT2G36240.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE77859.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.239214071021772 2.19810173432248 0.0576008195878326 1 2.74217490263928 15.6309586403790 0.239214071021772 0.123513134002441
AT1G44810_at 6.18504545427639 6.33540611776116 6.21695919337865 6.25372803404891 6.86760771789568 6.0836405900933 5.9309846404526 6.31358436370852 6.11230648162288 6.11906756354849 6.55590034570393 6.41045700471979 6.16497472504933 6.32832653307371 6.30199084513816 6.46334784070554 6.23129405315512 6.55297743081933 5.73440103232181 0.198090327714446 0.190726006871517 0.197548801825753 0.198108331906348 0.194095361241238 0.190214323216906 0.191920492041281 0.192336111065869 0.209036225715568 0.189787621287602 0.194208415270018 0.197998708053209 0.191430937610001 0.200605203313126 0.195967584404255 0.192477480147424 0.206151304762037 0.204400632685272 0.196310080823892 1 1 + 16926492 16926913 16926704.455 16925983 16927261 + gene protein_coding_gene FALSE TRUE AT1G44810.1 transcription regulator similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT4G00250.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.275897822301177 2.19677982896064 0.0577219424797025 1 2.74030562254213 12.4557446588486 0.275897822301177 0.153321674277902
AT2G45540_at 7.55500078654282 7.73670414942318 7.30781776692666 6.94488867492682 7.19287787972951 6.69799776061794 7.25301566626197 6.15582990142805 6.54300229597246 6.70111753318477 7.84648499430175 8.19201585836977 7.57753006385652 7.38849082786144 7.79078671071557 7.65751721932752 7.55868369858629 7.22442402545085 7.1137807660995 0.237208905755965 0.229541713125413 0.229541713125413 0.236783364849824 0.237111437929066 0.242423889901226 0.229541713125413 0.234091090651411 0.263441717657187 0.246217256585196 0.235067919893667 0.229541713125413 0.242784836739178 0.236689523023191 0.236251070072486 0.229541713125413 0.247939790086037 0.241969325954808 0.243922221859940 2 2|0 -|/ 18765206 18765756 18765510.5 18764563 18779303 - gene protein_coding_gene FALSE TRUE AT2G45540.1 WD-40 repeat family protein / beige-related similar to beige/BEACH domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G60920.1); similar to Lysosomal trafficking regulator LYST and related BEACH and WD40 repeat proteins (ISS) [Ostreococcus tauri] (GB:CAL53426.1); similar to Os02g0663300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047656.1); similar to OSJNBb0012E24.4 [Oryza sativa (japonica cultivar-group)] (GB:CAE01863.2); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Beige/BEACH; (InterPro:IPR000409); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985) 0.364641352179680 2.19529334179566 0.0578584445279119 1 2.73820388115394 14.3257458431793 0.364641352179680 0.21981734004837
AT2G43780_at 6.01707911201336 6.14378519426025 5.89450978082214 6.12902464939523 5.98512343063148 5.51661987438511 5.76540409897123 5.94499825868173 4.97544120314613 5.04489345701816 5.76811193122462 5.5420250154333 5.58473186035321 5.54173296931597 5.61865987911801 5.82251823997169 5.3891302557751 5.3371334000837 5.18497045944981 0.20892084880998 0.222111600056936 0.224301821423254 0.206194634207252 0.209102522137923 0.218656756271841 0.204022415462822 0.209473446328837 0.216268341222576 0.213003308083 0.206913989457206 0.212619138881082 0.206050426341776 0.211067762230342 0.205860174108744 0.204356144823744 0.212994721939524 0.213840947568672 0.205516681086705 2 2 - 18143523 18143680 18143596.273 18143521 18143724 - gene protein_coding_gene FALSE TRUE AT2G43780.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99375.1); similar to Os12g0611700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067254.1) 0.210286585932468 2.19452235558005 0.0579293679651734 1 2.73711389837845 11.2465382917855 0.210286585932468 0.0983220545486319
AT2G02860_at 5.20016084571911 5.09762784709070 5.12165878963829 4.46827207595367 4.76400746207132 4.54469598182807 5.20114929404375 5.02642470283782 5.26748856643895 5.04759223308599 4.87983625266238 5.68764230925281 4.74465347071489 4.7765605944202 5.41925872338605 4.98836905178408 4.59302688298611 5.36527484983879 5.07335556315693 0.238448722581684 0.240148322225179 0.24652146836249 0.242818956912491 0.239790040341171 0.245287321522499 0.250589644264768 0.238448722581684 0.249631738736020 0.239507066335402 0.242283453792842 0.238448722581684 0.242105698581408 0.240796933535642 0.239440510806161 0.238448722581684 0.250822595937077 0.240610684633526 0.241392867957936 2 2|0 -|/ 828568 829460 829042.4 828351 832454 - gene protein_coding_gene FALSE TRUE AT2G02860.1|AT2G02860.2 SUT2 (sucrose transporter 3); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter|SUT2 (sucrose transporter 3); carbohydrate transporter/ sugar porter encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. Identical to Sucrose transport protein SUC3 (Sucrose permease 3) (Sucrose-proton symporter 3) (Sucrose transporter 2) (SUC3) [Arabidopsis Thaliana] (GB:O80605); similar to SUT4 (SUCROSE TRANSPORTER 4), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G09960.1); similar to sucrose transporter 2A [Hevea brasiliensis] (GB:ABJ51934.1); similar to sucrose transporter 2B [Hevea brasiliensis] (GB:ABJ51932.1); similar to sucrose transporter type 2 [Manihot esculenta] (GB:ABA08445.1); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002)|Identical to Sucrose transport protein SUC3 (Sucrose permease 3) (Sucrose-proton symporter 3) (Sucrose transporter 2) (SUC3) [Arabidopsis Thaliana] (GB:O80605); similar to SUT4 (SUCROSE TRANSPORTER 4), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G09960.1); similar to sucrose transporter 2A [Hevea brasiliensis] (GB:ABJ51934.1); similar to sucrose transporter 2B [Hevea brasiliensis] (GB:ABJ51932.1); similar to sucrose transporter type 2 [Manihot esculenta] (GB:ABA08445.1); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) -0.239666557864984 -2.19349084841415 0.0580243904429562 1 2.73565572503251 10.0211529021185 -0.239666557864984 0.124317033686473
AT4G01940_at 8.70225005318161 8.69939231584715 8.71634812099618 8.72867343979353 9.18988286655529 8.52457371513562 8.77013847094281 8.48402055473457 7.78782042536702 7.89335563486048 8.18405906995084 8.13718545233366 8.19483322482783 8.0711671179 8.27681041952015 8.27958138814216 8.37568140546283 8.07170524895621 7.84787380146979 0.148045895262754 0.154998577118213 0.159373855826530 0.159812065539215 0.157195674723952 0.153960340080089 0.152577392410325 0.154608991055352 0.166359057504761 0.162929821730187 0.161415145118107 0.148045895262754 0.157333076965255 0.156568429165523 0.153868574382505 0.154597574434068 0.184260754117083 0.152146448830463 0.159064327887893 4 4|0 -|/ 842358 843266 843015.6 841989 843459 - gene protein_coding_gene FALSE TRUE AT4G01940.1 NFU1 (NFU domain protein 1) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast. Identical to NifU-like protein 1, chloroplast precursor (AtCNfu1) (AtCnfU-IVb) (NIFU1) [Arabidopsis Thaliana] (GB:Q93W77;GB:Q9SYJ1); similar to NFU2 (NFU domain protein 2) [Arabidopsis thaliana] (TAIR:AT5G49940.1); similar to Nitrogen-fixing NifU, C-terminal [Medicago truncatula] (GB:ABE87765.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) 0.240890241132282 2.19344302503539 0.0580287996460164 1 2.73558812366239 16.7478572103746 0.240890241132282 0.125349384684584
AT1G80530_at 6.21109353327632 7.05087039083734 6.11579940936116 6.61132526570885 7.19285149348421 6.84060179555686 7.24140715929376 7.1491042588653 6.18113395240752 5.39294511951347 6.71386161476091 6.93836689564377 6.43247858237196 6.35378780738325 6.90056491868523 6.47889048420634 6.72263036425933 5.93768713611668 5.573809195295 0.241042993481438 0.232608246332661 0.235616556905146 0.235826866660943 0.232705720385292 0.244521616832151 0.231303538991188 0.239793262102864 0.25865989277493 0.249530684657259 0.231303538991188 0.23136414770571 0.234372837656787 0.25286069508818 0.243325593553396 0.234084305353459 0.233362257157755 0.241155721942542 0.245751461304558 1 1 - 30283148 30283721 30283400 30282844 30285216 - gene protein_coding_gene FALSE TRUE AT1G80530.1 nodulin family protein similar to nodulin family protein [Arabidopsis thaliana] (TAIR:AT2G16660.1); similar to nodulin-like protein [Poncirus trifoliata] (GB:AAN62343.1); similar to Nodulin-like [Medicago truncatula] (GB:ABE93291.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) 0.310423187574682 2.19340622591056 0.0580321926628313 1 2.735536105976 12.9395047788815 0.310423187574682 0.180124112875868
AT3G23540_at 6.43894662796921 6.59533623201204 6.90032360759425 7.00655322589888 7.41907925972985 6.99185422695482 6.65743506809898 6.4039436464256 6.51681725372612 6.07564458180461 5.76479424515014 6.00243944645753 6.29126305462513 5.84281481997308 5.48015837072127 6.43512677784269 6.64344539106485 6.2939703304176 6.13691015251551 0.200898156980855 0.186038878439133 0.194205789293214 0.196187019617193 0.195123354658613 0.193316893403282 0.188099211728243 0.196269376355730 0.203745507893055 0.191258696926461 0.199943146255576 0.194869662704615 0.194542586123698 0.194374854633085 0.196070381002485 0.187631270196119 0.191533489103669 0.186038878439133 0.192051198296217 3 3 + 8447453 8447993 8447767.182 8443452 8448077 + gene protein_coding_gene FALSE TRUE AT3G23540.1|AT3G23540.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14290.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14290.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96061.1); similar to Os03g0359000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050149.1); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) 0.20333237246706 2.19161526342866 0.0581975618189869 1 2.73300469160942 12.9703717621089 0.20333237246706 0.0919833268663527
AT1G23130_at 12.8307807582137 12.874493148468 13.2544308084304 13.2912609519247 13.3107957396545 13.1210725480981 13.3525958185014 13.3561953147878 12.9618422006996 13.0105954836270 13.1211482148947 12.8222530615495 13.3319448293558 13.0312561117125 12.5763109673302 13.1075283227239 13.4292030895149 13.0352125532703 12.6783595144867 0.082136306599348 0.0755451620596526 0.0783182487814862 0.076794247757518 0.0755629885477432 0.0789360320922591 0.0792355576585118 0.0774903413378849 0.0832968381815843 0.0777181731450227 0.0805555856124235 0.0831409554746759 0.0755451620596526 0.0807484736841733 0.0838262779301684 0.0816636461379159 0.0767562810402506 0.0772595259763648 0.0762702832039616 1 1|0 +|/ 8200439 8200961 8200736.8 8200372 8201224 + gene protein_coding_gene FALSE TRUE AT1G23130.1 Bet v I allergen family protein similar to Bet v I allergen family protein [Arabidopsis thaliana] (TAIR:AT1G70840.1); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.157065914778544 2.19112479104108 0.058242930428819 1 2.7323115127764 26.1441812410424 0.157065914778544 0.0342958710719924
AT3G01720_at 7.60885021247924 7.97928575733929 7.7538375052657 7.82538416212756 7.2557872619613 7.33800589616089 6.75067340988312 6.46649874949594 6.91279341830724 6.3817394331464 6.68604000824919 7.16305234190751 6.42957275748691 6.71847392379002 6.25103086150776 6.46751970627971 6.65213657103855 6.7641063427693 6.49054405396807 0.193047819048237 0.191573491645543 0.190457528726424 0.194927644628303 0.195582422398616 0.196457525280292 0.206304678198526 0.193090757066781 0.198779866044056 0.199460258512657 0.202677981567078 0.187981865424556 0.187981865424556 0.187981865424556 0.196486357531035 0.194161009333183 0.187981865424556 0.189411834660147 0.19816688240176 3 3 - 262440 262971 262733.545 262258 265912 - gene protein_coding_gene FALSE TRUE AT3G01720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13500.3); similar to Os01g0904500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045124.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL50270.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448) 0.194196301533759 2.19091540050681 0.0582623095936 1 2.73201559324960 13.9905489689737 0.194196301533759 0.0829682171487337
AT2G16640_at 8.0594928369568 8.52005920158127 7.46297800432552 7.25393132973723 7.90264520446476 7.77205611061623 6.81157821053442 6.92133716250919 6.35710220787276 7.05082372658539 6.0502970671826 6.98411284146962 6.65988558327202 5.99106392390688 6.26306113660902 6.93035112046492 6.27822313132606 6.38218679451184 7.20047593042753 0.229249003496034 0.222767289170475 0.216409888543991 0.219534349678165 0.224621497923346 0.226884838952727 0.215894603667983 0.218067565197773 0.231696759485877 0.215894603667983 0.218659058038716 0.215894603667983 0.224860023873666 0.229983041652801 0.225208771852898 0.222014724852696 0.232290998728985 0.225125918458554 0.215894603667983 2 2 - 7218589 7219052 7218795.182 7218194 7222635 - gene protein_coding_gene FALSE TRUE AT2G16640.1 ATTOC132/TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132); transmembrane receptor similar to TOC159 (translocon outer membrane complex 159) [Arabidopsis thaliana] (TAIR:AT4G02510.1); similar to ATTOC120 (Arabidopsis thaliana translocon outer complex protein 120), GTP binding / protein translocase [Arabidopsis thaliana] (TAIR:AT3G16620.1); similar to chloroplast Toc125 [Physcomitrella patens] (GB:AAS47583.1); similar to putative chloroplast outer envelope 86-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44144.1); similar to AAA ATPase; AIG1 [Medicago truncatula] (GB:ABE87459.1); contains InterPro domain Chloroplast protein import component Toc86/159; (InterPro:IPR005690); contains InterPro domain AIG1; (InterPro:IPR006703) -0.203641889530923 -2.19059858087694 0.0582916433961927 1 2.73156786137749 14.2439422516597 -0.203641889530923 0.0923733354965597
AT1G66330_at 10.1092945527608 10.0787794958827 10.6363760315468 10.5810278240982 10.5889912636876 10.3403061165603 11.1434571183522 10.8874812832538 10.5155198823224 10.6344715322014 10.1352372237108 9.88639463887798 10.3211678891603 10.3237889792253 9.88234453873515 10.5604388727056 10.5921845028324 10.1646150846038 10.5513037933517 0.0797422379915564 0.07748464443493 0.0785580522327062 0.0783671588084214 0.0783111861416693 0.079440803300583 0.0787990735534224 0.0851755514369184 0.0833421114045506 0.0840856402216565 0.0794861359110694 0.0797467940982559 0.0806360221980352 0.0826837335134958 0.0856131460826984 0.0798894763598352 0.08347029201006 0.0793675393220026 0.0819386336471521 1 1 - 24733657 24734409 24734075.182 24733292 24736154 - gene protein_coding_gene FALSE TRUE AT1G66330.1|AT1G66330.2 senescence-associated family protein similar to NTA15 protein [Nicotiana tabacum] (GB:AAP41026.1); contains domain ARM repeat (SSF48371) -0.175952369991468 -2.19055949261639 0.0582952635180924 1 2.73151262247183 20.9458991451961 -0.175952369991468 0.0627218773755554
AT1G29440_at 4.03253610469377 5.17572083930466 5.7859034837716 5.84927288470678 7.45290876405733 6.92674467624519 6.90479774363991 6.96187690949336 8.0648143903564 7.5236155240712 8.55782604551197 8.7298415400778 7.98339115072789 7.77867930433887 8.6357980553106 8.11966908866807 7.56983592829231 7.8490675053796 8.90693091944125 0.217576303207207 0.212697093003661 0.216754126082403 0.205459402407852 0.206482525007956 0.208654151158199 0.216517369888123 0.206199822829569 0.226646929515049 0.205193822839454 0.213116307890314 0.207383644255081 0.206472242174548 0.223297315543107 0.208841916924268 0.206986062439833 0.212247109384009 0.208368606329798 0.210551579160401 1 1 - 10304557 10304775 10304695.091 10304557 10304955 - gene protein_coding_gene FALSE TRUE AT1G29440.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G29430.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.361433926122201 2.18872808676261 0.0584651251179429 1 2.72892473513795 14.2952871033614 0.361433926122201 0.218281805590737
AT3G09970_at 7.42432408236618 7.84682382513066 7.56205909662748 7.80815708075239 7.90307735477953 7.13132460201502 7.61202597061861 7.47201749136482 7.07210380025664 7.3726592748233 6.66206764849333 7.00668555946408 6.55407594649188 6.84738873013457 6.19795006235304 7.03863223675994 6.50657712132536 6.33164181309374 7.22150567472526 0.242537276244184 0.227277501682173 0.237015278243076 0.234754700866518 0.234585143128098 0.233959466764223 0.230167728655518 0.222447089974846 0.233928338230183 0.228866405191662 0.233067945980924 0.222473534967290 0.228615190155066 0.232066953497603 0.239858691729328 0.222328205711634 0.234115932944564 0.232736833954322 0.237421950339953 3 3|0 +|/ 3064226 3065301 3064971.3 3063779 3065580 + gene protein_coding_gene FALSE TRUE AT3G09970.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT3G09960.1); similar to ACI14 [Lycopersicon esculentum] (GB:AAY97872.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.283302751165186 -2.18819800836321 0.0585143801308698 1 2.72817578509943 14.5275846744733 -0.283302751165186 0.159949225057248
AT4G33490_at 7.13138476835775 7.24838002422394 5.56122856740987 5.37157112449452 6.41159203729617 6.19455610065107 5.36802355553102 4.92595681524514 4.95882356430586 4.42857849912924 6.26929465278146 5.51738667679767 4.9732336614502 5.12303193167529 5.86844333157356 4.71491253622177 4.72952648941709 5.97975951876728 4.72482984184366 0.20583612934742 0.201828880137818 0.201815789138645 0.198114912254642 0.201272921472449 0.203355571317168 0.203487567257017 0.203026637592568 0.202372678979966 0.199960659563634 0.201217170597527 0.196940134366956 0.209142691565594 0.206412429715623 0.199701995102668 0.198208076020746 0.196940134366956 0.196940134366956 0.201635189911051 4 4|0 -|/ 16108813 16109668 16109216.333 16108762 16110679 - gene protein_coding_gene FALSE TRUE AT4G33490.1 pepsin A similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G44130.1); similar to nucellin-like protein [Daucus carota] (GB:BAD80835.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.2045859823497 2.18768197836287 0.0585623688947326 1 2.72744671991642 11.0770995749487 0.2045859823497 0.093543279260747
AT1G64180_at 4.38724681096662 4.8151684270022 4.78468432519423 5.11213305105163 5.61087553721147 5.25459676352334 4.67721428305685 4.90896866918409 3.9017002946808 4.78928364738334 5.15037677275976 4.31335981466614 4.70567903451742 4.50282818986408 4.18387280237855 4.50901299191089 4.64404142041905 4.24149074019238 4.98860266598598 0.218170917383509 0.217081993131212 0.220339443138562 0.220060641393882 0.223342146173939 0.236790264475395 0.222063398132581 0.228266840878802 0.230221763563951 0.221535268186288 0.219314815295238 0.217081993131212 0.217081993131212 0.218426792639802 0.219264971610769 0.217081993131212 0.230159877104227 0.217081993131212 0.232297455760465 1 1 + 23827267 23827813 23827553.909 23825179 23828022 + gene protein_coding_gene FALSE TRUE AT1G64180.1 intracellular protein transport protein USO1-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41620.1); similar to unnamed protein product; gb|AAF24581.1 gene_id:MBK23.17 strong similarity to unknown protein [Medicago truncatula] (GB:ABE79740.1) 0.232446694923945 2.18710667746068 0.0586159151671663 1 2.72663395644882 9.48945844515976 0.232446694923945 0.118764458905601
AT3G15160_at 6.38469088146858 6.51936230451938 5.85832404249515 5.59246672521667 6.96788990275873 6.16955142308796 5.36274658838254 4.97699459078078 6.31642502576188 6.42824013147569 6.62712627092269 7.28351563922828 6.11569479770613 6.66792757404627 6.87039925740011 6.62103785977837 5.95810094363834 6.63054360373603 6.34046337806944 0.209245591528354 0.206312494991393 0.208057662912476 0.209780687989083 0.200336150310626 0.200394453772753 0.208693303811823 0.210772016677074 0.211132084641389 0.209736465910235 0.200336150310626 0.201237012095423 0.205302559404948 0.201702134918317 0.228680405163708 0.202180218367743 0.203776657020544 0.220647739678086 0.205033024622411 3 3|0 +|/ 5107132 5108259 5107751.444 5104374 5108480 + gene protein_coding_gene FALSE TRUE AT3G15160.1 similar to hypothetical protein DDBDRAFT_0219917 [Dictyostelium discoideum AX4] (GB:XP_628907.1); similar to Os04g0626900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053950.1); similar to OSJNBb0060E08.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04752.3); contains domain ARM repeat (SSF48371) 0.285596581819916 2.18675072716841 0.0586490693918987 1 2.72613110532105 12.4582546848767 0.285596581819916 0.161874618136687
AT1G47740_at 6.64790366692837 6.87704901088538 6.35398926919803 6.3836460111426 7.16182348129838 6.80920042869195 7.36047075115655 7.42819826548378 7.3860567422687 7.02274811074969 7.54071977619927 7.62595559855321 7.07932675010292 7.46707362027423 7.6305404492705 6.98174773472903 6.44720178636297 7.58555496556107 7.38299973727358 0.192053849082176 0.178431425428328 0.183834299029967 0.18701770924849 0.183934200633952 0.186402479591418 0.180148389362010 0.179030027712308 0.178843715466696 0.172400069320714 0.173208860975134 0.175614296408816 0.178265985913413 0.174192780553071 0.174925169840849 0.17288685194071 0.182655688414929 0.174550232690098 0.175496611547703 1 1 + 17570699 17571420 17571133.636 17568951 17571737 + gene protein_coding_gene FALSE TRUE AT1G47740.1|AT1G47740.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25170.1); similar to UPF0326 protein hag1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94476.1); similar to Os03g0198500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049279.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) -0.185205202164893 -2.18592844850163 0.0587257291628931 1 2.72496953645605 14.1571350848793 -0.185205202164893 0.0738919389932721
AT3G01770_at 8.27323171194122 8.14695186365225 8.31397423427032 8.2897585511299 8.9651883900153 8.67894225205668 7.1613405704582 7.17035700568375 8.74173641142632 8.58136879771312 8.27680047241015 8.22760200540215 8.31953745274355 8.1834438670027 7.72348069971196 8.5618192258156 8.55243906353255 8.20220237246023 9.05261746602634 0.162924923985938 0.164007612341475 0.165032107480058 0.163538903149144 0.163641201146155 0.169124276016828 0.160549911199446 0.171094015652596 0.159894612326620 0.158911987191144 0.16776576626617 0.170674968721751 0.166325891068788 0.175982848179113 0.175094613663185 0.166625947597463 0.164210113556198 0.159119922453013 0.158415108473386 3 3|0 -|/ 275609 276378 275900.9 275418 278792 - gene protein_coding_gene FALSE TRUE AT3G01770.1 ATBET10 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 10); DNA binding similar to ATBET9 (ARABIDOPSIS THALIANA BROMODOMAIN AND EXTRATERMINAL DOMAIN PROTEIN 9), DNA binding [Arabidopsis thaliana] (TAIR:AT5G14270.1); similar to kinase-like protein [Oryza sativa] (GB:BAB41205.1); similar to Os02g0601800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047353.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.169001827715228 2.18475071549874 0.058835698727655 1 2.72330600228639 16.6488796740377 0.169001827715228 0.0543268031232103
AT1G50010_at 7.5444916854044 6.86357892631081 5.15601893557817 5.32756057095887 6.2374202546994 5.73931561366918 7.15614369170685 7.25036798279659 8.41389720508206 6.84544754712557 9.19535022483367 9.67417561245542 7.84577332709368 8.9935996909265 9.83850610740833 8.43665235887936 7.9073647306845 8.68602090253567 8.06141956769893 0.172667670595707 0.174598924425840 0.184241460015326 0.185451031426281 0.179196658983344 0.185353364079758 0.171812467856739 0.175358980915091 0.183289003122097 0.188577879970591 0.175190038168931 0.174582444251940 0.174518226232827 0.176764355215005 0.181417423326679 0.174129088849029 0.176514531260439 0.170773091790235 0.173280561825442 1 1 + 18522886 18523333 18523019.727 18521254 18523668 + gene protein_coding_gene FALSE TRUE AT1G50010.1 TUA2 (tubulin alpha-2 chain) Encodes alpha-2,4 tubulin. TUA2 and TUA4 encode identical proteins. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA6 (tubulin alpha-6 chiain) [Arabidopsis thaliana] (TAIR:AT4G14960.2); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to TUA4 (tubulin alpha-4 chain) [Arabidopsis thaliana] (TAIR:AT1G04820.1); similar to Tubulin alpha chain (GB:P33629); similar to alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] (GB:AAV92352.1); similar to putative tubulin alpha-2/alpha-4 chain [Brassica napus] (GB:AAQ81585.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) -0.269987232555815 -2.18445311974327 0.0588635183854888 1 2.72288568111986 14.7072464456344 -0.269987232555815 0.149875247072413
AT3G09050_at 6.77413851312646 6.87403817586066 5.73612600126816 5.70674706172209 6.81939947046124 6.51017787207208 6.84496818715875 6.76199758064692 6.25552681555603 6.42087445805231 6.63442966311826 6.99513960846234 6.08270274922338 6.54731595689 7.72610017097425 6.60340885035679 6.22575733469508 5.86705361861682 6.2487903800687 0.216712652722071 0.212382653567727 0.212382653567727 0.212382653567727 0.218119859716198 0.223048728728696 0.218330127648127 0.228579721428365 0.226151125553392 0.213774748531554 0.225779368474109 0.212382653567727 0.213962541270814 0.214520693387509 0.222423134296715 0.212382653567727 0.220564669307901 0.219357449589032 0.220501554679546 3 3|0 +|/ 2765047 2765836 2765342.3 2764656 2766149 + gene protein_coding_gene FALSE TRUE AT3G09050.1 similar to Os01g0853000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044830.1) -0.171915868333768 -2.18424597585381 0.05888289009888 1 2.7225931202395 12.9502669637568 -0.171915868333768 0.0582619266742886
AT1G07510_at 7.46793228646693 7.83374605666639 7.82325870934857 8.03008861466708 7.67723026204121 7.85610414397036 7.6885702890975 8.10510866194958 7.87802117060484 8.03551689334802 7.37170815484609 7.30267371891452 7.59251031982175 7.45758399554812 7.05245905498436 7.82663872090356 7.55315548646992 7.47742982849223 7.979005662015 0.145897733449673 0.144197291856465 0.143116554727364 0.146380727544676 0.144600108143774 0.144296455431270 0.154883239327808 0.142496019541182 0.161776676553556 0.150517813372437 0.151281293331833 0.148824672340255 0.139263444987050 0.155690767834824 0.152019241728937 0.14069075005451 0.140109222298455 0.144347360168982 0.144326168864357 1 1 + 2308406 2309353 2309061.455 2305375 2309541 + gene protein_coding_gene FALSE TRUE AT1G07510.1 FTSH10 (FtsH protease 10); ATPase encodes an FtsH protease that is localized to the mitochondrion similar to FTSH3 (FtsH protease 3), ATP-dependent peptidase/ ATPase [Arabidopsis thaliana] (TAIR:AT2G29080.1); similar to AAA ATPase; Bacterial luciferase-like; Peptidase M41, FtsH extracellular [Medicago truncatula] (GB:ABE82014.1); similar to AAA-metalloprotease FtsH [Pisum sativum] (GB:AAK77908.1); similar to AAA ATPase; Peptidase M41, FtsH extracellular [Medicago truncatula] (GB:ABE78727.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.218540111515007 -2.18236652336863 0.0590589391438785 1 2.71993892792019 15.5194804540194 -0.218540111515007 0.106972198342595
AT3G11500_at 6.76771835351165 7.11297673982547 6.71110080632883 6.7378422810789 7.05032257432074 6.87542036133519 6.67050863271423 6.84336738291757 6.83442152412282 6.83633276366145 7.3562547448976 7.57757748432353 7.44707218050849 7.41284553403836 7.31185110252384 7.34738394933079 6.69147795652903 6.9043563237992 6.97653127972648 0.143324804735109 0.143994686154304 0.139138304278258 0.142451281855424 0.140192181691894 0.138058391685371 0.14908560893747 0.143597101619504 0.151343836474499 0.153896565649859 0.141257385879584 0.139195884884941 0.138059761457621 0.149610410764509 0.139240622198681 0.140677621977751 0.139429787253055 0.149781624894629 0.143281599064974 3 3|0 -|/ 3621634 3622443 3621808.143 3621415 3622612 - gene protein_coding_gene FALSE TRUE AT3G11500.1 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative similar to small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative [Arabidopsis thaliana] (TAIR:AT2G23930.1); similar to TonB box, N-terminal; Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABD32677.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.184351307756979 2.18002895661950 0.059278620660744 1 2.71663844405537 13.9154226075028 0.184351307756979 0.0735002480392061
AT1G33270_at 7.63361183135659 7.30028984334195 7.67641517768614 7.86095444705352 8.02577057345475 7.52742538145134 8.04902635862119 7.93019831651525 6.73121720777342 7.0125314178186 6.78145663841773 6.81177804357726 7.09820166087956 7.03485871092607 6.61367935542546 7.53758234367755 7.62274366549533 7.29929613136331 6.35585087243012 0.228448871534214 0.227637449207442 0.228565305773455 0.226241710683846 0.223614420819656 0.234457671285953 0.226166293026551 0.218663168019388 0.247758868113943 0.223808883961335 0.228905529369696 0.224447022038937 0.221102043273285 0.22978377402314 0.225267554537433 0.218663168019388 0.233777266827052 0.225129942640844 0.235077612876117 1 1|0 -|/ 12068323 12069477 12068902.667 12068043 12070354 - gene protein_coding_gene FALSE TRUE AT1G33270.1|AT1G33270.2 patatin-related similar to patatin, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94222.2); similar to Os11g0546300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068065.1); contains InterPro domain Patatin; (InterPro:IPR002641) 0.222221438416135 2.17990816630889 0.0592899941348019 1 2.71646791652271 14.6503695252156 0.222221438416135 0.11048782363139
AT1G32400_at 9.70571073678253 9.78052225817407 10.1225949148031 10.1092751192243 10.6065814541917 9.99899606115479 10.1598383588250 10.1643776665409 10.1119597508681 9.65485137939885 10.2511986864691 9.83396014673785 10.1600624108697 10.0940742504674 10.0661010655750 9.98246951899636 9.56374549251425 10.2366289484161 9.77127032897084 0.102661044453849 0.099774022307692 0.104552911908043 0.0982017868370308 0.0996359043249978 0.110984462043668 0.0962587222946491 0.0975542372553372 0.0999804371814205 0.102947513616636 0.0962587222946491 0.0962587222946491 0.096941762258275 0.100688218491455 0.096729111596132 0.0962587222946491 0.107968766627159 0.0989998637979699 0.0981315478239183 1 1|0 -|/ 11689373 11690457 11689833.3 11689088 11691511 - gene protein_coding_gene FALSE TRUE AT1G32400.1|AT1G32400.2|AT1G32400.3 TOM2A (TOBAMOVIRUS MULTIPLICATION 2A) TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20230.1); similar to CD9/CD37/CD63 antigen [Medicago truncatula] (GB:ABE93060.1); contains InterPro domain CD9/CD37/CD63 antigen; (InterPro:IPR000301) 0.217126272094640 2.17934718779377 0.059342843275711 1 2.71567597264596 20.0157656802545 0.217126272094640 0.105967518511049
AT1G79770_at 6.13069804450936 6.3991885767136 5.0686979724168 5.03677137690529 5.62234786583535 6.18852911606202 5.13914459425395 5.94019442675587 6.13238321252209 5.80393322813835 5.61822237992685 5.21754716573186 5.43886895002004 5.73761092291244 5.27272413981062 6.04382906781927 5.64987141019233 5.82793105333047 5.41368435687934 0.226848262580838 0.228828031134031 0.233621416357543 0.226873469132548 0.226065813939798 0.231920658495553 0.224889406770287 0.224929719577991 0.223377781377661 0.235655890278562 0.229891177142305 0.224929416676446 0.228487143455403 0.235079090132224 0.228713305674703 0.223356984615077 0.224719244156145 0.225539662041852 0.237246285760472 1 1 + 30019294 30019740 30019537.273 30019254 30019971 + gene protein_coding_gene FALSE TRUE AT1G79770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25840.1); similar to Os06g0554200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057846.1); similar to Os01g0199700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042311.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26169.1); contains InterPro domain Protein of unknown function DUF1677, plant; (InterPro:IPR012876) -0.302863895357638 -2.17754738000205 0.0595127132203278 1 2.713135439272 11.3827761143805 -0.302863895357638 0.176086714625096
AT3G45900_at 7.38519611339357 7.60701409543454 7.34851446205053 7.32864541363722 8.2365643664665 7.45107387124958 8.50418435697704 8.44544049156915 8.12069409633807 8.47201585694 8.25616891575177 8.33193237196862 8.36697099050427 8.35950391114807 7.65901152318065 8.37092025736158 8.1311552132052 7.70746858704828 8.22049054102317 0.18084437276376 0.176624636929444 0.191987501313125 0.183427515577006 0.177710576508779 0.181611408946508 0.189892640716653 0.181586108319419 0.196423084860846 0.174691428495642 0.176406709028472 0.175373552894984 0.172188815991942 0.174297608408997 0.181480412196402 0.172188815991942 0.190646286811119 0.172188815991942 0.182857980383494 3 3 - 16885551 16886126 16885806.364 16885387 16887068 - gene protein_coding_gene FALSE TRUE AT3G45900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53020.1); similar to Os03g0853600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051930.1); similar to putative 200 kDa antigen p200 [Oryza sativa (japonica cultivar-group)] (GB:BAD88062.1); contains domain TRANSCRIPTION FACTOR X1-LIKE (PTHR21596:SF1); contains domain RIBONUCLEASE P PROTEIN SUBUNIT P38-RELATED (PTHR21596); contains domain Tubulin chaperone cofactor A (SSF46988) -0.258717298077653 -2.17612710292952 0.0596470987559087 1 2.71113094769041 15.9978082976997 -0.258717298077653 0.141656014867338
AT3G07330_at 4.61724354269115 4.77209412644954 4.70862109181242 4.43459218524953 4.86528876387241 5.01258482248439 5.19051007373631 5.55990670686009 5.02799520887529 4.23652370617575 5.41193821364246 5.46527453029084 5.4673067896127 5.24258885477157 5.05391230734112 4.83306700406009 5.14129157093303 5.08252443831522 4.34766249133032 0.252195530859906 0.248482887257452 0.259833238075474 0.257912958694941 0.256227180418791 0.264581448990736 0.253465552249007 0.259906719915993 0.26847215822165 0.250593245465428 0.249760386054632 0.248635651158115 0.254075007583061 0.250383879526076 0.248482887257452 0.250086706644078 0.252487148512136 0.259643491524976 0.255998894306881 3 3 - 2336154 2336691 2336436.727 2335618 2339106 - gene protein_coding_gene FALSE TRUE AT3G07330.1 ATCSLC06 (Cellulose synthase-like C6); transferase, transferring glycosyl groups encodes a gene similar to cellulose synthase similar to ATCSLC08 (Cellulose synthase-like C8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G24630.1); similar to ATCSLC12 (Cellulose synthase-like C12), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G07960.1); similar to ATCSLC05 (Cellulose synthase-like C5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G31590.1); similar to putative glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAT44138.1); similar to putative CSLC9 [Oryza sativa (japonica cultivar-group)] (GB:BAC10759.1); similar to cellulose synthase-like C3 [Physcomitrella patens] (GB:ABI55235.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.197588632457087 2.17580143160551 0.0596779554436511 1 2.71067135416869 9.76992104701848 0.197588632457087 0.087767986689844
AT3G16370_at 11.1367130692126 11.4702203970890 9.66891211671178 9.94645529278173 11.2578543774861 11.0434292537089 11.3750316562935 11.8217099709744 12.2431166156993 11.4653792069009 12.9031816788035 13.0799670482840 12.4737481833571 12.3881956224558 12.8084513998878 11.9385280127502 11.1788585760519 12.4267011953717 11.9293236298041 0.109625665924417 0.101290595077647 0.135441581216785 0.116114681404378 0.102759579220028 0.112131893535007 0.103366448190928 0.105162259622964 0.114083563491644 0.101947989087689 0.103596190342537 0.103052162562904 0.101340681543567 0.108869877606387 0.102162458039618 0.101290595077647 0.111753872614327 0.102207259360774 0.101837718787001 3 3|0 +|/ 5557628 5558326 5558037.4 5556716 5558595 + gene protein_coding_gene FALSE TRUE AT3G16370.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT5G22810.1); similar to Lipolytic enzyme, G-D-S-L [Medicago truncatula] (GB:ABE90349.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.225662599700725 -2.17500753156350 0.0597532414384098 1 2.70955104842391 23.1045293244931 -0.225662599700725 0.113974201355987
AT1G65420_at 5.07024781323508 5.92330985392408 5.21775085391516 5.3509844606047 5.53428717182709 6.24312084732344 5.47722571677815 5.90372570132411 4.96412288715703 5.25330015205912 6.22574337052076 5.76505431685949 5.74763237937151 5.37998087454576 6.13412351567383 5.70502840738603 5.58059320125859 5.58426870162873 4.99558399738991 0.239290530882063 0.24542295825579 0.232756216308089 0.239068722611486 0.230146781917572 0.229984859271991 0.229647162880291 0.229647162880291 0.250868940176792 0.235973012752910 0.230817444740547 0.236203638631992 0.239145742172730 0.241829763983097 0.233779449311944 0.229727979532725 0.242724935392987 0.245174666484746 0.232054710736250 1 1 - 24301354 24301991 24301638.818 24301148 24302233 - gene protein_coding_gene FALSE TRUE AT1G65420.1 Identical to Ycf20-like protein [Arabidopsis Thaliana] (GB:O80813); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56830.3); similar to Protein of unknown function DUF565 [Medicago truncatula] (GB:ABE93092.1); contains InterPro domain Protein of unknown function DUF565; (InterPro:IPR007572) 0.343604656236238 2.17442856219858 0.0598082041452126 1 2.70873409501718 11.0082342730869 0.343604656236238 0.206929780881657
AT1G73660_at 6.438945934311 6.38127261142407 6.3323323222451 6.09380054347733 6.67110346054245 6.00127400523834 7.42754821549787 6.94358971911147 6.68774430362801 7.10029646479022 6.75983025852385 7.16863234900847 6.9714700284677 7.19726341900102 6.2956081602995 7.42542941494134 7.09372708962384 6.84836252770825 7.15948952510363 0.171373760551298 0.169935556300069 0.169527947007728 0.169911118882250 0.181840447845307 0.193198986848117 0.179163654496592 0.170867605398860 0.185071532818239 0.173647356635544 0.165906377183165 0.170008075108293 0.173374962550059 0.166628187069729 0.175734256921678 0.165576614457418 0.187228676877183 0.181320813908037 0.174743021066434 1 1 - 27695958 27696993 27696452 27695554 27700872 - gene protein_coding_gene FALSE TRUE AT1G73660.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G11850.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G18160.1); similar to putative CTR1-like kinase kinase kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD38153.1); similar to CTR1-like kinase kinase kinase [Brassica juncea] (GB:AAP86285.1); similar to hypothetical protein MtrDRAFT_AC139526g23v1 [Medicago truncatula] (GB:ABE80154.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) -0.267840614552083 -2.17414441933062 0.059835196518912 1 2.70833317274597 13.5125086033746 -0.267840614552083 0.149179840182967
AT1G72340_at 7.65176871703662 7.873884427347 7.16643697047069 7.12773648247935 7.71789338100338 7.50243296017302 6.85805925112595 7.3041169354472 7.08538407728057 7.14012044584504 6.90069640812098 7.04022313075448 6.25914236947177 6.71548318088957 6.6003816323656 6.7945850206652 6.43571152597915 6.59857089619679 6.87210406747699 0.219742596919032 0.209917734671805 0.223785387774805 0.22550555678836 0.215467584521128 0.214293247929166 0.230331556872787 0.213040770501659 0.223887587901989 0.217849597243478 0.216323435799374 0.209841262047536 0.226598285157839 0.234688965246278 0.217864968120895 0.214268783558010 0.229312230849319 0.215608035019035 0.228867646107956 1 1 + 27241369 27242120 27241825.636 27240537 27242274 + gene protein_coding_gene FALSE TRUE AT1G72340.1 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G53880.1); similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G53900.1); similar to Initiation factor 2 subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98593.1); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) -0.203884655259839 -2.17303874627333 0.0599403444967593 1 2.70677318689544 14.2506088743469 -0.203884655259839 0.0941874975541167
AT4G13640_at 8.97389148836743 8.94779134435022 8.42684368533281 8.32233035367036 9.18125234998033 9.04939280329278 8.15127805925402 8.04208399143037 8.14757330705135 7.96596660959428 8.50729881431956 8.2026317150303 8.21483845078067 8.36847526156005 8.13802419856637 7.88988868764857 8.15423757227163 7.8144904146394 8.08212058071528 0.14998314625347 0.152905065394457 0.158246794605148 0.157294618233307 0.154769845236279 0.163798424631629 0.156829579510247 0.153955156534461 0.166306989635830 0.159018113047182 0.153603232541558 0.14998314625347 0.161750634317728 0.153694279783261 0.151846343900018 0.152418896112712 0.1638707994274 0.165119934557434 0.156852041728045 4 4 - 7936874 7937660 7937183.182 7936588 7938641 - gene protein_coding_gene FALSE TRUE AT4G13640.1|AT4G13640.2 UNE16 (unfertilized embryo sac 16); transcription factor|UNE16 (unfertilized embryo sac 16) similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G24120.1); similar to myb family transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26189.1); similar to Os02g0174000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046045.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G24120.2); similar to myb family transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26189.1); similar to Os02g0174000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046045.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.156104525391830 2.17277509752418 0.0599654438615948 1 2.70640123176962 16.7500859120293 0.156104525391830 0.0350043595835611
AT4G30490_at 8.74452707087789 8.63035472171616 9.0437657871536 9.01039942754878 8.75981792748162 8.2938778377253 8.3159225841375 8.21217348212103 7.48110405767645 7.73599921069149 7.80368616689313 7.74428901714946 7.77685102464113 7.43601547309908 7.44877318384717 7.71802288359077 8.10444411000885 7.9682632158995 7.76902521451862 0.174111686197504 0.172007498738359 0.175266076338633 0.184056003878986 0.184499652070506 0.17750785348836 0.183126908184887 0.179989113413665 0.196038668037982 0.172759647709639 0.176415436492001 0.171158768537002 0.176680440701303 0.181009444612210 0.176746487927232 0.172634282695285 0.178184066487002 0.169807280314405 0.175683075245408 4 4|0 -|/ 14899235 14900057 14899742.8 14899040 14902150 - gene protein_coding_gene FALSE TRUE AT4G30490.1 AFG1-like ATPase family protein similar to ATPase [Arabidopsis thaliana] (TAIR:AT4G28070.2); similar to PREDICTED: similar to lactation elevated 1 [Gallus gallus] (GB:XP_419799.2); similar to Os08g0265500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061401.1); contains InterPro domain AFG1-like ATPase; (InterPro:IPR005654) 0.194610543513231 2.17175714666578 0.0600624495145218 1 2.70496519899651 16.3323978358552 0.194610543513231 0.0851338690129203
AT4G18130_at 8.16709119936827 8.12281698387005 8.12718047123697 8.13730249127542 8.46237159669476 8.04574898529583 8.73090023008266 8.54206911004213 8.1960504986676 8.51836186439132 8.27212062485997 8.23759354434 8.28283679503628 8.16440115474829 8.0275988914839 8.67851862934306 8.56939847731598 8.11993800618842 8.71026421899778 0.115060424578300 0.114524160156020 0.110957730821061 0.120336752446083 0.119864388047623 0.121210769340991 0.119588762110862 0.111020907713346 0.11684471409952 0.114609971793837 0.116369682089270 0.110925693260025 0.116591057415596 0.125251843049409 0.118095263585006 0.113589262476908 0.121351684503929 0.114934330523464 0.113524218041501 4 4 - 10042385 10042819 10042663.727 10042149 10046094 - gene protein_coding_gene FALSE TRUE AT4G18130.1 PHYE (PHYTOCHROME DEFECTIVE E); G-protein coupled photoreceptor/ signal transducer member of Histidine Kinase Identical to Phytochrome E (PHYE) [Arabidopsis Thaliana] (GB:P42498); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to Phytochrome E (GB:P55004); similar to phytochrome e [Medicago truncatula] (GB:ABD33241.1); similar to phytochrome E [Lycopersicon esculentum] (GB:AAF25812.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.189204961659724 -2.17150303063278 0.060086689489986 1 2.70460673753094 16.6764066132000 -0.189204961659724 0.0795476127933616
AT2G23980_at 5.34608572125534 5.62514324325184 5.32520265751773 5.43800412612581 6.79424685901909 6.12988946442807 5.2533181331464 5.40821221805465 5.5882865606273 5.36084003286358 5.95060907730041 5.94467675187071 5.74783477402194 5.77646553671858 5.30091966983986 5.56845075825742 5.29042157686185 5.59313645872687 6.07443219532552 0.241310912535704 0.235694691145164 0.238794126572916 0.244254433104006 0.241804938334194 0.234342746051779 0.240106758992086 0.243342935596166 0.241776528795447 0.23067453969572 0.245770000704383 0.232020858164348 0.231830545240997 0.236980309419002 0.252470162631798 0.230158898847333 0.232601327163824 0.234799413500748 0.234477979036445 2 2 - 10208371 10208832 10208638.091 10208184 10211547 - gene protein_coding_gene FALSE TRUE AT2G23980.1 ATCNGC6 (CYCLIC NUCLEOTIDE GATED CHANNEL 6); calmodulin binding member of Cyclic nucleotide gated channel family Identical to Probable cyclic nucleotide-gated ion channel 6 (AtCNGC6) (Cyclic nucleotide- and calmodulin-regulated ion channel 6) (CNGC6) [Arabidopsis Thaliana] (GB:O82226;GB:Q9XFS4); similar to ATCNGC5 (CYCLIC NUCLEOTIDE GATED CHANNEL 5), calmodulin binding / cyclic nucleotide binding / potassium channel [Arabidopsis thaliana] (TAIR:AT5G57940.2); similar to ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT4G30560.1); similar to ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT1G19780.1); similar to Cyclic nucleotide-gated ion channel 9, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97880.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.242845338511594 2.17142532909002 0.0600941033074019 1 2.70449713187499 11.3255547637108 0.242845338511594 0.129034296430982
AT1G27310_at 9.2803842884996 9.25616408116693 9.11614290940058 9.20094093658922 9.3947954441756 9.32872931334598 8.68285637562086 9.06775239516637 8.76438431003416 8.55110967333085 8.85938795695354 8.88480790383076 8.90344289214238 8.8564937254192 9.0977289345002 8.64620254685098 8.4393825725376 8.65438565468684 8.5483924520256 0.141308326176519 0.137231023946275 0.134687300626816 0.142497836830234 0.141880535047229 0.137357296019082 0.128404285638691 0.137645160878974 0.140620976559829 0.139724475078067 0.131362600425710 0.129668740617849 0.132193679946526 0.139577443292762 0.131238857750312 0.135746591582250 0.146888371432852 0.146638373285993 0.133400613269221 1 1 - 9484626 9485747 9485554.091 9484303 9485883 - gene protein_coding_gene FALSE TRUE AT1G27310.1 NTF2A (NUCLEAR TRANSPORT FACTOR 2A); Ran GTPase binding / protein transporter Encodes an ortholog of yeast NTF2, a nuclear envelop transport protein that functions as the nuclear import receptor for RanGDP, an essential player in nucleocytoplasmic transport. similar to NTF2B (NUCLEAR TRANSPORT FACTOR 2B), Ran GTPase binding / protein transporter [Arabidopsis thaliana] (TAIR:AT1G27970.1); similar to Os01g0788200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044479.1); similar to hypothetical protein SPAC1B9.01c [Schizosaccharomyces pombe 972h-] (GB:NP_593753.1); similar to Os08g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062338.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075) 0.179898205333030 2.17134199162852 0.0601020558670338 1 2.70437957713337 17.87298296891 0.179898205333030 0.0692839217962417
AT2G37220_at 10.7080099623406 10.8154768249844 10.3298065515363 10.4908348100707 10.6421380101440 10.5868577391225 10.5027270419890 10.7300832868188 10.8577828275334 10.7772561741536 11.1514125034762 11.2910373807765 11.4107939754872 11.2780801295480 11.4165436986685 11.3727684071911 11.2747631482106 10.7447633995402 10.562661735919 0.0851341762722593 0.0837816766709663 0.0905620473499345 0.0863810226083632 0.0857154768804286 0.0898218166854165 0.0900415787669746 0.0853455105629649 0.0848082567545966 0.0879732218619153 0.083874547997658 0.0837816766709663 0.0837816766709663 0.087393841005159 0.0837816766709663 0.0837816766709663 0.0868665502343154 0.086032089752757 0.0868187845491264 2 2 - 15642068 15643089 15642496.364 15641604 15643488 - gene protein_coding_gene FALSE TRUE AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative Identical to Putative ribonucleoprotein At2g37220, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU4); similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA binding [Arabidopsis thaliana] (TAIR:AT3G53460.2); similar to 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A) (GB:Q08935); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.166644208256070 2.17069741482593 0.0601636000971015 1 2.70347037803757 21.5882853998246 0.166644208256070 0.0525545095483418
AT3G05990_at 4.1049460427463 4.8786633361867 4.63462761819335 4.48896681255377 4.97940312526515 5.31886114816994 4.42723239214994 5.21288315802663 5.2640316665146 5.71395545544282 4.815799765184 5.15531399993568 4.8380126294286 4.62018310277397 4.09195936979097 5.02415244276223 4.78737838166832 4.57608045041026 5.84847013420848 0.235438829990525 0.214462171062896 0.221411669026946 0.222176230532409 0.219101820258121 0.226147600171811 0.226554575462694 0.212168506582443 0.238147677286269 0.222028324835099 0.212168506582443 0.216383980030500 0.214495470833098 0.234959729718822 0.219449908304069 0.216324692640388 0.228499361779806 0.218433881119172 0.221790865100962 3 3|0 -|/ 1797284 1798548 1798073.111 1796858 1799876 - gene protein_coding_gene FALSE TRUE AT3G05990.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G19230.1); similar to Os03g0184400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049189.1); similar to Putative protein with similarity to putative protein kinases [Oryza sativa] (GB:AAK92623.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.335337811938109 -2.17068674117909 0.0601646197371999 1 2.70345532295519 9.92941250572791 -0.335337811938109 0.201245118668878
AT4G32060_at 11.8926900182859 11.7607485355223 11.9810820709988 11.7689623684936 12.0556191874769 11.8878842762919 11.6359923618857 11.4045090054841 11.7442206994912 11.6854759553921 11.8354443932108 11.8477897066048 11.8862007875834 11.7944497515908 11.6477626069634 11.9678877841944 11.9588589116521 11.7841144141297 11.7803421786827 0.0587415678268489 0.0569251072424246 0.0569251072424246 0.057297515018331 0.0589628817727696 0.0569541409460611 0.0579332260272618 0.0584581638716593 0.0625236239297562 0.0615261939716124 0.0577688836186321 0.0569251072424246 0.0574801865759864 0.0655629277183385 0.0605308512458628 0.0576662470524048 0.0652921712830081 0.0576075790285307 0.0584633962333112 4 4 + 15502829 15503265 15503069.909 15501084 15503599 + gene protein_coding_gene FALSE TRUE AT4G32060.1|AT4G32060.2 calcium-binding EF hand family protein similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE93293.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.176767964411654 2.17031643354031 0.0602000052497016 1 2.70293301718911 23.5869325558948 0.176767964411654 0.0656976379652518
AT4G13100_at 6.46211605978442 6.24011861843135 6.02525625757284 5.57776353304229 6.5722993902637 5.89540394967072 6.8398111583203 6.34915342901061 5.89380832086303 6.50217706431059 5.77221541586246 6.7417348045414 6.01782705519452 6.02116477797726 5.90047707169145 6.68830689718091 6.65048594630753 5.70343019759336 6.55123828010026 0.244517044059337 0.241585750593574 0.249898952391612 0.252509540180975 0.242283785212403 0.245652053672952 0.246900081848418 0.249928545173543 0.246166368197299 0.248169074193854 0.238451038719482 0.242015423007915 0.244619021265826 0.255967680871315 0.241728639279818 0.241824525715681 0.245622828864650 0.238431138895789 0.241751660294870 4 4 - 7636570 7637283 7637016.182 7636435 7639034 - gene protein_coding_gene FALSE TRUE AT4G13100.1|AT4G13100.2|AT4G13100.3 zinc finger (C3HC4-type RING finger) family protein similar to calmodulin binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G25030.2); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE85544.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to calmodulin binding / protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G25030.2); similar to zinc finger-like protein [Phaseolus vulgaris] (GB:AAO49653.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.291952492356816 -2.16973894737650 0.0602552288433105 1 2.70211853156776 12.4965885457878 -0.291952492356816 0.168536501084620
AT1G13090_at 8.37866682491591 8.6184165723255 8.70214570166176 8.58707082763553 8.84157392239287 8.54742701157453 8.92279292166798 8.60488599908101 7.96971671772409 8.7358770452516 7.5812678381113 7.74510345890198 7.95537937952723 7.98994902749147 7.89747273402685 8.28493166351802 8.43028226128852 8.02785063847809 8.5594188721582 0.143399252143333 0.140839755089589 0.145669877782315 0.145669633021562 0.145440223308955 0.148593087706646 0.143968439864495 0.147012357052616 0.156682459394302 0.141578178792398 0.155313903118099 0.144456260840137 0.143786867945706 0.155058730734001 0.146888197219303 0.140839755089589 0.152554345682467 0.145100556673298 0.144024040180152 1 1 + 4462826 4463359 4463130.545 4461804 4463541 + gene protein_coding_gene FALSE TRUE AT1G13090.1 CYP71B28 (cytochrome P450, family 71, subfamily B, polypeptide 28); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B28 (EC 1.14.-.-) (CYP71B28) [Arabidopsis Thaliana] (GB:Q9SAE3); similar to CYP71B7 (cytochrome P450, family 71, subfamily B, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13110.1); similar to PAD3 (PHYTOALEXIN DEFICIENT 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26830.1); similar to CYP71B29 (cytochrome P450, family 71, subfamily B, polypeptide 29), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G13100.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.197138733445728 -2.16880621058755 0.0603445290500104 1 2.70080309919311 16.8557227244298 -0.197138733445728 0.0879535554929621
AT3G50790_at 7.91133795267215 7.58546824060879 7.22425854775105 7.19510797806256 7.76742196245974 7.37956012617143 8.59823328435896 8.30187186062343 8.39769444915387 8.42860260776187 8.89846027710713 8.87154011010663 8.46637974303687 8.7540579376561 8.93696346406969 8.76011932025642 8.4106059371459 8.50330735180433 8.41948371991107 0.138816113588352 0.128383351176148 0.141456608783535 0.134165395790030 0.130835123445388 0.135742597489385 0.131938467199889 0.13056995939307 0.131939106296207 0.130659527347726 0.133855142827030 0.135498366981599 0.13501842570993 0.130036197438229 0.132082506447852 0.125489327236275 0.139927317380936 0.12735840215697 0.128951125881258 3 3|0 -|/ 18891154 18891924 18891472.125 18890904 18892963 - gene protein_coding_gene FALSE TRUE AT3G50790.1 late embryogenesis abundant protein, putative / LEA protein, putative similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G34340.1); similar to putative late embryonic abundant protein EMB8 [Oryza sativa (japonica cultivar-group)] (GB:BAD25578.1); contains InterPro domain Protein of unknown function UPF0017, hydrolase-like; (InterPro:IPR000952); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain AB-hydrolase YheT, putative; (InterPro:IPR012020); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.211360836124511 -2.16816109948688 0.0604063678287625 1 2.69989337446897 16.3031272573836 -0.211360836124511 0.101691921494357
AT1G74910_at 9.29807133200362 9.3111435778157 9.00162298725026 9.00536284481997 9.76044843471612 9.37015462117822 9.60794256783195 9.3603113336753 9.668881861648 9.67632818198533 9.38847206504925 9.33729685033741 9.43230666206156 9.36098883000573 9.33526295524696 9.21389135170868 9.35014849246383 9.32384141153297 9.48920526044775 0.100508432646436 0.098719552910254 0.103976728780122 0.100143221761214 0.097303095050593 0.0997360348582019 0.10145783653352 0.100026695344122 0.103419301781624 0.0960237419209104 0.100747509913251 0.100413802508143 0.0959468329774725 0.0998689994312031 0.103821853914416 0.0968849583929669 0.101466025885030 0.100825977830066 0.0968523768838946 1 1|0 -|/ 28139476 28140589 28140073.3 28139022 28142487 - gene protein_coding_gene FALSE TRUE AT1G74910.1|AT1G74910.2|AT1G74910.3 ADP-glucose pyrophosphorylase family protein similar to ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana] (TAIR:AT2G04650.1); similar to putative GDP-mannose pyrophosphorylase [Linum usitatissimum] (GB:ABF48494.1); similar to Os03g0208900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049332.1); similar to Nucleotidyl transferase; Trimeric LpxA-like [Medicago truncatula] (GB:ABE79911.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835)|similar to ADP-glucose pyrophosphorylase family protein [Arabidopsis thaliana] (TAIR:AT2G04650.1); similar to putative GDP-mannose pyrophosphorylase [Linum usitatissimum] (GB:ABF48494.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.189332835783363 -2.16780246998338 0.0604407720285653 1 2.69938766641389 18.8165061350753 -0.189332835783363 0.0800245182212544
AT3G21175_at 5.37904622348238 5.45154063170048 5.01948258910425 5.03309784486374 5.43475920470218 5.30428504335809 5.00968531168082 4.78107532361341 4.81111186433655 4.43132652372703 4.63307748566491 4.7854295870565 4.99666013923618 5.02690686247842 4.90743721959559 5.16769426613539 4.94791775596945 4.75493067068389 4.61577529087294 0.181634194976676 0.177094061077992 0.177594289843403 0.181558839950051 0.175403335258595 0.178767085702958 0.173729886046003 0.173373809462899 0.182935465919483 0.181802547843679 0.182010932830571 0.175227336146195 0.182145446093686 0.172711235786067 0.173384728744851 0.178124379577208 0.179874642736386 0.184037197140135 0.175527258815869 3 3|0 +|/ 7423253 7424379 7423640.5 7422042 7424911 + gene protein_coding_gene FALSE TRUE AT3G21175.1|AT3G21175.2 ZML1 (ZIM-LIKE 1); transcription factor member of a novel family of plant-specific GATA-type transcription factors. Identical to GATA transcription factor 27 (ZIM-like 1 protein) (ZML1) [Arabidopsis Thaliana] (GB:Q8GXL7;GB:Q8LF08;GB:Q94B66;GB:Q9LU42); similar to ZML2 (ZIM-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51600.2); similar to male-specific transcription factor M88B7.2 [Marchantia polymorpha] (GB:AAT12424.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain ZIM; (InterPro:IPR010399); contains InterPro domain CCT; (InterPro:IPR010402) 0.162835743297413 2.16747792533847 0.060471922932953 1 2.69893003738377 9.9375771755622 0.162835743297413 0.0473065895169232
AT1G24610_at 7.15728666128625 7.31629630155293 6.66838858767908 6.58093456723412 7.05608278890173 6.78231285496591 7.5628052213119 7.41154669094735 6.89381132020445 7.63178653975252 7.4775389732595 7.96560502561711 7.10843818145668 7.75371294550167 7.85886854188662 7.55738914533031 7.08182252512969 7.32650062767639 7.29651124274533 0.186285778593729 0.176565788664867 0.191092940906043 0.192895301768146 0.179216454190420 0.184243563013624 0.180056425676167 0.174858610180548 0.190847717672412 0.187912568906481 0.18521555687617 0.177693356621126 0.175730570955157 0.183595056481797 0.190068783301812 0.182921041113132 0.207723532379782 0.181144700834730 0.187464146131039 1 1 - 8720892 8721441 8721155.727 8720637 8722732 - gene protein_coding_gene FALSE TRUE AT1G24610.1 SET domain-containing protein similar to ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G14030.1); similar to Os02g0733800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048036.1); similar to N-methyltransferase (ISS) [Ostreococcus tauri] (GB:CAL58003.1); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.173927945457295 -2.16679610545718 0.0605374175798523 1 2.69796867517958 14.4620921408847 -0.173927945457295 0.0625782010338164
AT3G09410_at 5.22966036847384 4.87658822701696 4.9043514008287 4.99346153778108 5.22311817981016 4.72547644513125 4.74196427635244 4.35594686193873 4.08521175083235 4.13059100122546 4.35267389988303 4.76877590171822 4.80362845312305 4.74196081689391 4.1911669634647 4.48681764883534 4.60935261345461 4.86902643458274 4.64397973956282 0.16676599001457 0.163681810200348 0.172184399229461 0.170710625297923 0.164549459560863 0.166743632128587 0.163122526344203 0.165084479715363 0.169467634649983 0.165772206986764 0.163624335602922 0.165894263528877 0.161405522283886 0.164040802258821 0.161919127821296 0.161567496637355 0.166931750076562 0.162739886378101 0.163183929662189 3 3|0 -|/ 2895015 2899418 2896969.4 2895015 2901025 - gene protein_coding_gene FALSE TRUE AT3G09410.1|AT3G09410.2|AT3G09410.3 pectinacetylesterase family protein similar to pectinacetylesterase family protein [Arabidopsis thaliana] (TAIR:AT5G23870.1); similar to pectin acetylesterase [Eucalyptus globulus subsp. globulus] (GB:ABG34283.1); similar to Os01g0974500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045555.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963)|similar to pectinacetylesterase family protein [Arabidopsis thaliana] (TAIR:AT5G23870.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); similar to Os01g0974500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045555.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) 0.238446567531605 2.16531408027890 0.0606800185885397 1 2.6958792533645 9.32608066485064 0.238446567531605 0.125897392082231
AT1G70490_at 10.6629233844686 10.7592643711176 11.0401898608745 11.1446855995506 10.7583105774654 10.7887396742192 11.1215671672757 11.1765274857409 10.9554562020397 10.9434620182225 11.2828256562677 11.3384593160275 11.0767940494376 11.1626456410657 11.2046259494314 11.1757336360731 10.9395558560586 11.2694855436730 10.7422021880920 0.102774465893845 0.102449093816894 0.104526388441442 0.103580526550851 0.102887888334195 0.104282414687067 0.101072122855898 0.105483452458946 0.115245804147960 0.102170453965775 0.104515526029891 0.102238493924614 0.103151316154644 0.105847101317128 0.113278269149685 0.101481979863512 0.104563311916600 0.107785154419317 0.108510673605108 1 1|0 -|/ 26567956 26568784 26568345.875 26567587 26569473 - gene protein_coding_gene FALSE TRUE AT1G70490.1|AT1G70490.2|AT1G70490.3 ADP-ribosylation factor, putative A member of ARF GTPase family. A thaliana has 21 members of this family, known to be essential for vesicle coating and uncoating and functions in GTP-binding. Gene encoding ADP-ribosylation factor and similar to other ARFs and ARF-like proteins. The gene is shown to play a role in cell division, cell expansion and cellulose production using antisense construct. Identical to ADP-ribosylation factor 2 (AtARF2) (ARF2-B) [Arabidopsis Thaliana] (GB:Q9SRC3;GB:Q9S9K6;GB:Q9SGY6); Identical to ADP-ribosylation factor 1 (ARF1) [Arabidopsis Thaliana] (GB:P36397); similar to ATARF/ATARF1/ATARFA1A (ADP-RIBOSYLATION FACTOR 1), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT1G23490.1); similar to ADP-ribosylation factor [Gossypium hirsutum] (GB:CAD12855.1); similar to ADP ribosylation factor 002 [Daucus carota] (GB:ABB03801.1); similar to ADP-ribosylation factor [Capsicum annuum] (GB:AAF65512.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.151901531214844 2.16501966645373 0.0607083863466808 1 2.69546421312745 21.9623456028169 0.151901531214844 0.0268917769299951
AT3G44880_at 10.4506698116958 10.5581551355429 10.9630944812076 11.0782582806034 11.1544235753355 10.6701523841782 10.7968180395689 10.7496563761750 10.4578951782499 10.4757111453470 10.4302689555916 9.97430512417037 10.6193204057093 10.5968836548752 9.7056805171884 10.5539315784904 10.5342537808705 10.4916759695977 9.95529280572511 0.0855301020312468 0.0813119883863193 0.0859566703019425 0.0833531401749616 0.0834107030600737 0.0824160426731347 0.0810802986694492 0.0806434597326633 0.0833248976143219 0.0818666044581717 0.0821209835735711 0.0826507592652476 0.0808093703915631 0.0838122670634369 0.0895649332657668 0.081593285039588 0.0871161340977167 0.0806434597326633 0.0813722955813905 3 3 + 16396451 16397109 16396856.455 16394580 16397297 + gene protein_coding_gene FALSE TRUE AT3G44880.1 ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) Encodes a pheide a oxygenase (PAO). Accelerated cell death (acd1) mutants show rapid, spreading necrotic responses to both virulent and avirulent Pseudomonas syringae pv. maculicola or pv. tomato pathogens and to ethylene. Identical to Pheophorbide a oxygenase, chloroplast precursor (EC 1.-.-.-) (Pheide a oxygenase) (AtPaO) (Accelerated cell death 1) (Lethal leaf-spot 1 homolog) (Lls1) (PAO) [Arabidopsis Thaliana] (GB:Q9FYC2;GB:O04422); similar to ACD1-LIKE, electron carrier [Arabidopsis thaliana] (TAIR:AT4G25650.1); similar to chloroplast pheophorbide a oxygenase PaO1 [Brassica napus] (GB:ABD60317.1); similar to lethal leaf spot 1-like protein [Lycopersicon esculentum] (GB:AAL32300.1); similar to chloroplast pheophorbide a oxygenase PaO2 [Brassica napus] (GB:ABD60316.1); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) 0.197323814061589 2.16478004175384 0.0607314845777723 1 2.69512641909141 21.1324483645813 0.197323814061589 0.0885050015219114
AT3G51270_at 5.22949281413492 5.53856021336665 5.18014360959549 5.37436192902677 5.84559253974463 5.48803477228418 5.16618056124633 4.89219638338377 5.80089653571972 5.27112457862559 5.66031695005569 5.87187111460432 5.11435093468259 5.66082838974511 5.95878745504317 5.54192221440336 5.58961770432002 5.7407937679581 5.39394091418545 0.202033842903374 0.199868287489258 0.201204031536486 0.200126475190167 0.203263552431233 0.197239382843837 0.192459248953991 0.196142595907284 0.203422434720813 0.194233192493810 0.193978173345840 0.192933611382980 0.197271931624815 0.198342745085662 0.193103578913008 0.198087738524266 0.210586146864114 0.200813825054598 0.202939186908217 3 3|0 +|/ 19046655 19047724 19047342.7 19044547 19047751 + gene protein_coding_gene FALSE TRUE AT3G51270.1 ATP binding / protein serine/threonine kinase similar to RIO1 family protein [Arabidopsis thaliana] (TAIR:AT2G24990.1); similar to Os01g0888700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045041.1); similar to putative RIO kinase 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD82370.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein of unknown function RIO1; (InterPro:IPR000687) 0.209541388235574 2.1644085246429 0.0607673133822415 1 2.69460271505301 10.9048028907787 0.209541388235574 0.100335640452698
AT2G30320_at 5.24659360581986 4.91566196842124 5.18182891537717 4.52569141236663 3.94655643306033 5.12080654087913 5.69854746581831 5.66792626009789 4.82378373059601 5.03640452997161 4.74850810655427 5.07684321785989 4.6943374267392 4.93649797581689 5.43526413746946 5.21003524525095 5.07155741342391 5.17822671167823 5.52768782855417 0.229400986166511 0.212957735930952 0.218623162930523 0.215595680410992 0.219917006924501 0.219532549774557 0.223204929773510 0.225401024858835 0.224475528766171 0.223382693518749 0.216537081154343 0.216101112617762 0.216764106770078 0.226454275563837 0.216498767563115 0.215712734501866 0.215773442106798 0.212732265870514 0.218276035619913 2 2 - 12932815 12933452 12933151.636 12932805 12934973 - gene protein_coding_gene FALSE TRUE AT2G30320.1 tRNA pseudouridine synthase family protein Identical to Putative tRNA pseudouridine synthase (EC 5.4.99.-) (tRNA-uridine isomerase) (tRNA pseudouridylate synthase) [Arabidopsis Thaliana] (GB:O22928); similar to tRNA pseudouridine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G76120.1); similar to tRNA pseudouridine synthase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95839.1); similar to Os03g0338600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050056.1); contains InterPro domain tRNA pseudouridine synthase; (InterPro:IPR001406) -0.386922374988336 -2.16433927259694 0.0607739942814599 1 2.69450509700547 10.1245519797582 -0.386922374988336 0.23978115658566
AT1G68720_at 7.13975583173169 7.52486217865633 7.09892620485443 7.00184991360036 7.87433911727896 7.54986356260881 7.60081943618668 7.59861960161584 7.43656392192557 7.56131891339829 7.46920289575137 7.38342366292147 7.10052135435357 7.34746874912693 6.78255541339315 7.31685976661731 7.12302486571276 6.99708493967667 7.50241680216636 0.180853496759102 0.178383486558214 0.183908816393241 0.187631791967507 0.175789135071899 0.178886292374437 0.171288480368238 0.182634577889949 0.183128731718335 0.172237659254790 0.175456804945055 0.188629590307349 0.176354800254239 0.194040382441232 0.181143261797899 0.173813296456935 0.182769391587077 0.175256128200084 0.171288480368238 1 1|0 +|/ 25811588 25812451 25812006.8 25808081 25812645 + gene protein_coding_gene FALSE TRUE AT1G68720.1 cytidine/deoxycytidylate deaminase family protein similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT5G28050.1); similar to hypothetical protein pc0648 [Candidatus Protochlamydia amoebophila UWE25] (GB:YP_007647.1); similar to Os06g0489500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057673.1); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125) -0.197425867840620 -2.16318824321834 0.0608851420546716 1 2.69288269931478 14.7686882733704 -0.197425867840620 0.0887518953815079
AT4G14950_at 5.05896420880228 5.2447597566256 5.60213543915712 5.32828424128188 6.09597612639182 5.4219452750202 5.66553977566854 5.65483150369346 4.77377722306904 4.44705201248777 4.94870073242573 4.5188987761871 5.23462959313687 4.93085055470975 4.95980066207001 5.11673777373838 4.45189831413903 4.85670176808026 4.57146068235562 0.206590470819321 0.217767262896193 0.212283064378213 0.216368409639293 0.213208991363077 0.215479724679069 0.209438097021383 0.206924807564577 0.231486165634879 0.21970819476155 0.205841935806359 0.207819101423130 0.218534151025992 0.213605964133751 0.208713642641245 0.213086501595757 0.228446380310217 0.206845594083926 0.209199534539639 4 4|0 +|/ 8546768 8547616 8547123.3 8545167 8548051 + gene protein_coding_gene FALSE TRUE AT4G14950.1|AT4G14950.2|AT4G14950.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05360.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91712.1); contains domain VACUOLE MEMBRANE PROTEIN 1 (PTHR10281:SF1); contains domain MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-RELATED (PTHR10281) 0.24295437921935 2.16257538979854 0.0609444027031259 1 2.69201894741655 10.2464081630543 0.24295437921935 0.129957798422222
AT2G20610_at 10.9230888730893 10.9533060066274 10.8431339949125 10.8122683401783 10.7873015949048 10.5669775259743 11.0384161089002 10.8861151934114 9.67471829309829 10.6751857988037 10.7588952050326 10.799240266474 10.6646813653385 10.8737142914673 10.4382541584933 10.7265851967473 10.4713534621147 10.8664680086965 10.1830429327301 0.085197303761306 0.0831351302846033 0.084780795658228 0.0894857822849112 0.082893390041241 0.086615957476066 0.0820762384189625 0.0820762384189625 0.097984305375393 0.0847300727434993 0.0825097690833483 0.0820762384189625 0.0820762384189625 0.0829876707981387 0.0849835576195348 0.0820762384189625 0.0841306139968851 0.0824627660045986 0.084063442397375 2 2|0 -|/ 8885301 8886182 8885906 8885041 8887466 - gene protein_coding_gene FALSE TRUE AT2G20610.1|AT2G20610.2 SUR1 (SUPERROOT 1); transaminase Confers auxin overproduction. Mutants have an overproliferation of lateral roots. similar to transaminase [Arabidopsis thaliana] (TAIR:AT4G28420.2); similar to putative nicotianamine aminotransferase A [Oryza sativa (japonica cultivar-group)] (GB:BAD23582.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Tyrosine/nicotianamine aminotransferase; (InterPro:IPR005958); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.162219402285127 2.16234371120303 0.060966819872023 1 2.69169243489453 21.2900999560029 0.162219402285127 0.0469498380953808
AT3G11200_at 8.28421443060541 8.37088158682886 8.43239277584897 8.40022066594081 8.14530086282829 8.42517309216278 8.03177789744364 8.38061960503534 8.01126808331619 7.82054897788601 8.33086094213585 8.41627638721625 8.20637949537227 8.42026707010386 8.38176057753595 8.44823143920827 8.34248797264118 7.92127894554385 8.21818074949244 0.132987865422209 0.129409668671744 0.129395002112257 0.132646350462410 0.135922218938264 0.130282306652183 0.136642799553835 0.127410925177154 0.140949857600348 0.141668447035989 0.139207349706347 0.127410925177154 0.137177707318372 0.131034907429840 0.139864427848601 0.132705199922209 0.138802888792651 0.132054062694412 0.131325231888187 3 3 - 3508416 3510064 3509121.818 3508048 3510633 - gene protein_coding_gene FALSE TRUE AT3G11200.1|AT3G11200.2 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT5G05610.2); similar to PHD4 [Medicago truncatula] (GB:ABJ99761.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.187837693019185 2.16135846069082 0.0610622427071714 1 2.69030397308222 16.4713770098957 0.187837693019185 0.0790322370739978
AT1G52600_at 9.68845527429483 9.7674159830993 10.0553508340123 10.1601763631708 9.86891026096438 9.29928788717968 9.5708379703253 9.40169057552818 8.70953837105636 8.6168795185686 8.6069844857509 8.97712884329116 8.71902021668416 8.72415433823024 8.73626154382688 8.70588193601924 8.84192678844064 8.88110751784954 8.424629014057 0.133994864672747 0.135259849220193 0.132326495223835 0.132993546994665 0.135496859645725 0.134556465752447 0.136029799190937 0.135718239464558 0.159174503009300 0.135182727796269 0.148197064582317 0.132595977615779 0.135397929047316 0.130116744795609 0.140161587675860 0.134107408726719 0.143138238229774 0.134610767427284 0.141104177774963 1 1|0 +|/ 19594320 19596114 19595314.625 19594194 19596364 + gene protein_coding_gene FALSE TRUE AT1G52600.1 signal peptidase, putative similar to signal peptidase, putative [Arabidopsis thaliana] (TAIR:AT3G15710.1); similar to Peptidase S24, S26A and S26B [Medicago truncatula] (GB:ABD28715.1); contains InterPro domain Peptidase S26B, eukaryotic signal peptidase; (InterPro:IPR001733); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) 0.214603646527080 2.16126096844422 0.0610716929098673 1 2.6901665898909 18.4053858985663 0.214603646527080 0.105308231395708
AT3G09735_at 8.52630912622782 8.86433277447682 8.29391857284436 8.36645702832833 8.62024927117229 8.23880568092143 7.60422721640669 7.52127192076663 8.00267490353916 7.47921802845347 8.44940592281659 8.35785883128734 7.86673385389838 7.74305314081383 7.77521030519398 7.85370300874631 7.63968929277012 7.39584765533442 7.73409070308599 0.199153752307773 0.197064089450025 0.210304588313276 0.204635500851318 0.211351479689712 0.209310694981885 0.201948930603082 0.213498619088281 0.237055521354111 0.206455804182020 0.210881050717244 0.201704657115573 0.209372335698584 0.202157381695887 0.199633672238914 0.197617519001824 0.226844715755783 0.221069556930725 0.200331355431061 3 3 - 2986828 2986978 2986913.455 2986631 2987974 - gene protein_coding_gene FALSE TRUE AT3G09735.1 DNA-binding S1FA family protein Identical to DNA-binding protein S1FA3 (S1FA3) [Arabidopsis Thaliana] (GB:Q93VI0); similar to DNA-binding S1FA family protein [Arabidopsis thaliana] (TAIR:AT2G37120.1); similar to DNA-binding protein S1FA (GB:P42552); contains InterPro domain DNA binding protein S1FA; (InterPro:IPR006779) 0.198674459255929 2.16050111672239 0.0611453966054295 1 2.68909587574851 16.0663709304183 0.198674459255929 0.0902381108145022
AT2G43030_at 11.8508796378942 11.9910142663169 11.3770930638021 11.4509186660824 11.7002704363388 11.8455833928790 11.9858859684073 12.1419415295467 12.4446430191084 12.2698979587117 12.5209573453467 12.6417328097759 12.2207573208465 12.3320162768743 12.7712605775522 12.3570387316683 11.9387352280519 12.3126708902214 12.2177209729761 0.0626267740052725 0.061892033412393 0.062420950033876 0.0626364375985286 0.0625589966123445 0.0654629900752964 0.0628263074182306 0.0624815950699408 0.0678333265783393 0.0645738033063497 0.0615722432856892 0.0614324388960479 0.0617736728360429 0.0656023244794323 0.0627080804863036 0.0614324388960479 0.0642782996333738 0.0652425233648801 0.0626189445863612 2 2 + 17902203 17902738 17902460.182 17901913 17902943 + gene protein_coding_gene FALSE TRUE AT2G43030.1 ribosomal protein L3 family protein Identical to 50S ribosomal protein L3-1, chloroplast precursor (RPL3A) [Arabidopsis Thaliana] (GB:Q9SKX4;GB:Q8LEQ9); similar to RPL3P (ribosomal protein large subunit 3P), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G17465.1); similar to 50S ribosomal protein L3, chloroplast precursor (GB:O80360); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Ribosomal protein L3; (InterPro:IPR000597) -0.161410898411150 -2.15992137396978 0.0612016887502965 1 2.68827901026084 24.1417734357289 -0.161410898411150 0.0459678035554632
AT1G29510_at 5.9395547342337 6.83642812034089 4.1278073964598 5.61262545261606 6.75829012111232 6.60123925311658 7.52622701688643 8.28605451746457 7.96026896408057 8.11253215521324 9.01392529718437 9.2626420332626 9.16159750309063 8.90360679481332 8.81788407264373 9.28558823196876 7.66674192799172 8.80223621065156 9.47271279349461 0.279131790970698 0.26401669751479 0.286186910760465 0.289936645880844 0.266663082606891 0.262448143527658 0.264980965924338 0.264247534210054 0.257081215632388 0.261884587891120 0.257081215632388 0.259595097737334 0.257081215632388 0.261793105679059 0.263532339278716 0.26538015881117 0.276018686480153 0.257081215632388 0.257081215632388 1 1 + 10322852 10323055 10322995.4 10322560 10323175 + gene protein_coding_gene FALSE TRUE AT1G29510.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT1G29450.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12781.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.51148454335859 -2.15987448156062 0.0612062441496340 1 2.68821294031303 15.1507528581356 -0.51148454335859 0.328852555962558
AT1G26560_at 7.43070469787865 7.47209140287747 7.71095222898993 7.757358114462 8.02667020779235 8.21734504149444 9.92207416771084 9.54868486823279 9.04990422798415 9.46796606370145 9.88088749221667 9.74827553458132 9.29288395273853 9.28420628275994 9.83066898160646 9.58999161708152 9.24474008571522 9.72656344755116 9.30529210687113 0.184038567800272 0.175770582001189 0.174770781251944 0.169148801876413 0.173901041797259 0.178087708236847 0.171821573133243 0.164765232302661 0.173447968125144 0.161102647755869 0.167644931843541 0.162381284184285 0.174595456613968 0.172970327661311 0.164597807745943 0.160175077285981 0.170999949364283 0.167276852174176 0.171444305167178 1 1 + 9180860 9181683 9181320.909 9178365 9181822 + gene protein_coding_gene FALSE TRUE AT1G26560.1 glycosyl hydrolase family 1 protein similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G54570.1); similar to Os03g0212800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049358.1); similar to beta-glucosidase, putative [Medicago truncatula] (GB:ABE90952.1); similar to Putative beta-glucosidase [Oryza sativa] (GB:AAK92581.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.182458838947243 -2.15925787791947 0.0612661754762191 1 2.68734419420198 17.6853174114133 -0.182458838947243 0.0733479952326491
AT3G02200_at 7.981573953473 8.21432387942412 7.60961185390522 7.42253899064767 8.33348791413103 8.11535639278452 8.03464788567643 7.89764909834298 8.00688131076358 7.563009405032 7.6750938251754 7.66980533860525 7.78182379234558 7.58875823160992 8.06160940236658 7.3512849997164 7.55384511267348 7.05952389907976 7.79062537320696 0.201324422027569 0.186520526363377 0.202498862741365 0.210469855319123 0.190707499848323 0.206591093920277 0.190239171157719 0.191709773356976 0.216321161648145 0.194898032089479 0.196059058547945 0.186826086857606 0.192669126460976 0.188235378391032 0.188984373085232 0.202591375283360 0.213442934255603 0.200433213436453 0.192420071483147 3 3|0 +|/ 407872 408888 408286.75 406601 409170 + gene protein_coding_gene FALSE TRUE AT3G02200.1|AT3G02200.2 proteasome family protein similar to proteasome family protein [Arabidopsis thaliana] (TAIR:AT5G15610.1); similar to unknown [Solanum tuberosum] (GB:ABB29949.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717)|similar to proteasome family protein [Arabidopsis thaliana] (TAIR:AT5G15610.2); similar to unknown [Solanum tuberosum] (GB:ABB29949.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) -0.177960268749828 -2.15867101161969 0.0613232698133998 1 2.68651739624506 15.6409271318135 -0.177960268749828 0.0682456184516604
AT3G16780_at 6.06735731364322 6.56304198379296 5.93160810198856 5.42710744555892 5.43723313665852 5.60574403018084 6.30878333164442 6.74601849560661 5.80179199925936 5.39022605291598 5.80620266817601 6.52693986086242 5.8350363218528 5.72486650643516 6.99347275960584 5.4838051911758 5.54483933416455 5.61433278732993 5.7467969032635 0.173270291138922 0.174052246924811 0.176788667657413 0.176063732377668 0.174989119899242 0.180664440934255 0.178378492424966 0.177616975312358 0.179877241252868 0.178190375757599 0.173241722621363 0.172457398876443 0.172457398876443 0.179755744829483 0.179916712035444 0.172657551079417 0.175942175187015 0.172457398876443 0.176159385997109 3 3|0 +|/ 5709056 5710095 5709577.222 5708931 5710585 + gene protein_coding_gene FALSE TRUE AT3G16780.1 60S ribosomal protein L19 (RPL19B) Identical to 60S ribosomal protein L19-2 (RPL19B) [Arabidopsis Thaliana] (GB:Q9LUQ6); similar to 60S ribosomal protein L19 (RPL19C) [Arabidopsis thaliana] (TAIR:AT4G02230.1); similar to 60S ribosomal protein L19 [Capsicum annuum] (GB:AAR83877.1); contains InterPro domain Ribosomal protein L19e; (InterPro:IPR000196) -0.262980912843863 -2.15847521095632 0.0613423302160616 1 2.68624155634651 11.8045910201409 -0.262980912843863 0.146820816385014
AT3G19950_at 7.62447805377429 8.42493137419033 8.20931108277047 8.32196298263948 8.39073086694135 7.96032849414328 7.96270725017737 8.11459828168128 7.76268996540821 7.46508732411138 7.93696888495599 7.99395657699133 8.01300177577083 8.18609638771317 7.55316255979345 7.98540305130537 7.6198173042144 7.74870562655184 7.29607516137221 0.208259457409162 0.201721823495391 0.215069114301706 0.216219223965826 0.200783302524548 0.216504723186682 0.211100311449796 0.212457170409285 0.225273289693265 0.219565407664218 0.202822454709147 0.197334803016647 0.201581054107787 0.207149811815499 0.205641662959546 0.206924763041594 0.207330220559761 0.212294486315124 0.212143908238228 3 3 + 6943254 6943765 6943532.727 6942775 6945230 + gene protein_coding_gene FALSE TRUE AT3G19950.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G55530.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78566.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.280296410307971 2.15814063039076 0.0613749137031802 1 2.68577021894547 15.8199259672277 0.280296410307971 0.160645914265149
AT3G62840_at 9.45260564504007 9.43389384886053 9.60648557413713 9.47935399367424 9.75376978274682 9.4787649505103 9.78530681837618 9.66303497506203 9.04150873281977 9.12400413628934 9.57232695471487 9.50771809832668 9.58272587951082 9.1962028153225 9.6960105736044 9.34079685848088 9.37689052866423 9.26128944543327 9.1361246177316 0.10698044258672 0.103367689638284 0.0993041011294326 0.109317753094352 0.101649780703057 0.105269046686057 0.0989597965987971 0.108671462503208 0.108637613061882 0.110768899856365 0.106288446101562 0.104293262171770 0.0989597965987971 0.122181741094067 0.107255696659701 0.102882165919815 0.115974162165730 0.108783344610533 0.101256329851738 3 0|3 /|- 23246726 23247046 23246891.6 23246465 23247791 - gene protein_coding_gene FALSE TRUE AT3G62840.1|AT3G62840.2 similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.4); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649)|similar to small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative [Arabidopsis thaliana] (TAIR:AT2G47640.3); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.168541284371362 2.15695688285769 0.0614903302809663 1 2.68410275428831 18.8527974351530 0.168541284371362 0.0566316281558941
AT1G62250_at 9.1868252000919 9.03368285545398 9.52410458612727 9.31438277915734 9.67662713955335 9.35415605013061 10.6591386427336 10.3485848895150 9.89090059131656 10.2857216524316 10.0924905975610 9.86759715588024 10.0545091915716 10.1563521036585 9.71198226511268 10.3704341889541 10.2118936854374 10.1173765040590 10.2081969129247 0.0810929288600647 0.0781780425122088 0.0790585582779368 0.0806624869462371 0.0772193685832228 0.0765469616790477 0.079740497014824 0.0751415212938435 0.081651736783811 0.0775343240822751 0.0751465575997335 0.0754002319754468 0.0758552459340492 0.0749674759912192 0.0787634741471174 0.0751025320640234 0.0763120223758278 0.0785746738483931 0.0782635830828867 1 1|0 -|/ 22999287 23000334 22999741.5 22999102 23001278 - gene protein_coding_gene FALSE TRUE AT1G62250.1|AT1G62250.2 similar to Os03g0744700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051239.1) -0.197591924450714 -2.15607904972747 0.061576057045832 1 2.68286634077667 19.7377390247222 -0.197591924450714 0.0895659540608617
AT3G45980_at 10.0629103632927 10.2166360443713 9.90562587389294 9.90710620596807 10.4025777808947 10.2025468340957 10.0853277443203 10.0309736047257 10.5850887119972 10.1332295043195 10.8715107587913 10.9311201582235 10.5131848723178 10.7059964654401 10.7490743005026 10.7100670833244 9.97955522999782 10.3933203223284 10.1576380026550 0.109050322546968 0.106896189738005 0.109634430089105 0.107575289490212 0.109302549862780 0.116447588825786 0.108021816874455 0.111661256466959 0.126041913157586 0.118571535349571 0.112747364986726 0.111417232704885 0.113631259389813 0.114831210608871 0.113373245655364 0.111306269424658 0.115279922226813 0.113789438316901 0.110885841538815 3 3 - 16908485 16908866 16908591.455 16908272 16908998 - gene protein_coding_gene FALSE TRUE AT3G45980.1 histone H2B Identical to Histone H2B.6 (HTB9) (H2BAt) (H2B) [Arabidopsis Thaliana] (GB:O23629); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT5G59910.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) 0.160122738538614 2.15359204489917 0.0618195666480701 1 2.67936404041262 20.55107008404 0.160122738538614 0.0446603524359739
AT1G50030_at 8.44557929204514 8.639236914527 8.59917805834557 8.63635773442525 9.3122734797801 8.69648224950332 8.44945108207349 8.10354178157112 8.39215797285643 8.68214166457858 8.7731290943835 8.45290040438907 8.35003437803616 8.43288867854386 8.67271986543228 8.83501186811915 8.6695488953357 8.84333744116203 8.58702389147055 0.186173537353781 0.182781573462951 0.185170528371309 0.185300979988085 0.186556805520732 0.198576987031863 0.177868643295319 0.191555307176169 0.207544305358760 0.185859445002114 0.181195895656459 0.186533603737582 0.180880403381593 0.187400056129518 0.177868643295319 0.179958432339089 0.195134688324304 0.194368410121339 0.184538634612187 1 1 - 18526423 18526986 18526716.7 18526109 18543663 - gene protein_coding_gene FALSE TRUE AT1G50030.1 TOR (TARGET OF RAPAMYCIN) Related to TOR proteins from yeast and mammals, regulators of cell growth in response to nutrient availability. TOR proteins belong to the family of phosphatidylinositol 3-kinase and are targets of the antiproliferative drug rapamycin. AtTOR binds the yeast FKBP12 protein in the presence of Rapamycin, is involved in embryogenesis and is expressed in embryos, endosperm and meristems. similar to ATR (ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED), inositol or phosphatidylinositol kinase [Arabidopsis thaliana] (TAIR:AT5G40820.1); similar to target of rapamycin [Zea mays] (GB:AAW78347.1); similar to PIK-related kinase, FAT; PIK-related kinase, FATC; Peptidase M, neutral zinc metallopeptidases, zinc-binding site; FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding [Medicago truncatula] (GB:ABE89775.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93990.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain PIK-related kinase, FATC; (InterPro:IPR003152); contains InterPro domain PIK-related kinase, FAT; (InterPro:IPR003151); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain HEAT; (InterPro:IPR000357); contains InterPro domain FKBP12-rapamycin-associated protein, FKBP12-rapamycin-binding; (InterPro:IPR009076) 0.238271215749706 2.15301148839626 0.0618765460682507 1 2.67854660654538 17.2014979929391 0.238271215749706 0.126902022932591
AT1G26750_at 6.25862616036575 6.17715913318103 5.94735730181066 6.15616273641002 5.99463448576059 5.39234034814905 6.38341271234426 6.07522691601035 5.93444376511717 5.27678838952865 5.45615736948325 5.82469250186348 5.32330755706795 5.15619316453161 5.79303552478564 5.17195978734729 5.54549733004899 5.49808436874282 5.55284096208156 0.211370130543868 0.21608857280208 0.219004542360852 0.210429786942124 0.217692958466164 0.223618034881093 0.212320552400689 0.216064179010865 0.222966771712722 0.208595724625623 0.210330471847309 0.209026072530781 0.21380495357739 0.213811696413362 0.212490044580416 0.212555643729725 0.225531237412153 0.212337256728696 0.209324216965758 1 1|0 +|/ 9246881 9247933 9247418.7 9246774 9248261 + gene protein_coding_gene FALSE TRUE AT1G26750.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96148.1) -0.233945467100672 -2.15153948149170 0.0620212483581515 1 2.67647421468999 11.5776851356171 -0.233945467100672 0.123339945015070
AT4G21710_at 8.37376224960126 8.41805407783262 8.2074125376061 8.17874395675408 8.73327746320467 8.68604901195216 8.25080401474916 8.29498335021356 8.02472155451789 7.98440969786168 7.61406010271815 7.63511070838182 7.73536233924248 7.73751595004515 7.63536144863322 7.63972132636283 7.42654527480032 7.83181164739687 8.19548876203009 0.153090257891458 0.159178163279383 0.153090257891458 0.161848680448744 0.160465848865744 0.155650712268871 0.159202510307241 0.157903408045037 0.159057939040895 0.153090257891458 0.163234460427703 0.156764700430885 0.158305894001062 0.163214190257069 0.165494317090332 0.154565701834666 0.177404012372030 0.155393850042358 0.153090257891458 4 4 - 11535715 11536393 11536040.909 11535537 11542280 - gene protein_coding_gene FALSE TRUE AT4G21710.1 NRPB2 (EMBRYO DEFECTIVE 1989); DNA binding encodes the largest subunit of RNA polymerase II complex (aka RNA polymerase B). Identical to DNA-directed RNA polymerase II 135 kDa polypeptide (EC 2.7.7.6) (RNA polymerase II subunit 2) (RPB135) [Arabidopsis Thaliana] (GB:P38420;GB:Q9SVS6); similar to NRPC2 (nuclear RNA polymerase C 2), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G45140.1); similar to NRPD2a (NUCLEAR RNA POLYMERASE D 2A), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G23780.1); similar to RNA polymerase II second largest subunit [Rhododendron macrophyllum] (GB:AAZ08457.1); similar to RNA polymerase II second largest subunit [Petunia x hybrida] (GB:AAY89347.1); similar to DNA-directed RNA polymerase II 135 kDa polypeptide (RNA polymerase II subunit 2) (GB:Q42877); contains InterPro domain RNA polymerase beta subunit; (InterPro:IPR007644); contains InterPro domain RNA polymerase Rpb2, domain 7; (InterPro:IPR007641); contains InterPro domain RNA polymerase Rpb2, domain 2; (InterPro:IPR007642); contains InterPro domain RNA polymerase Rpb2, domain 6; (InterPro:IPR007120); contains InterPro domain RNA polymerase Rpb2, domain 4; (InterPro:IPR007646); contains InterPro domain RNA polymerase Rpb2, domain 3; (InterPro:IPR007645); contains InterPro domain RNA polymerase Rpb2, domain 5; (InterPro:IPR007647); contains InterPro domain RNA polymerase, beta subunit; (InterPro:IPR007121) -0.147150376246086 -2.15153679388262 0.062021512859966 1 2.67647043117947 16.2554572183229 -0.147150376246086 0.0144435800201135
AT1G64040_at 9.82985675111449 10.0098279108405 9.99887586465123 10.0568069021465 10.3465755805267 10.1447189468256 9.7249753213333 9.87278687348036 9.70101317488005 9.54113095319394 9.71756431676162 9.51941865620603 9.84703064246335 9.64321036738943 9.54824713135714 9.78458332011332 9.52503341896494 9.79926308506538 9.6108728992784 0.0917326453145548 0.0921987751339687 0.0936356237147554 0.0924702776777382 0.0910224867952664 0.0935970397936136 0.0910224867952664 0.0961874378239073 0.110992401780381 0.0923677764288892 0.0964199695389238 0.0916053977676034 0.0941842101418313 0.0942216503257827 0.094304535407725 0.0914884026521366 0.101002374888101 0.095388365362376 0.0910224867952664 1 1 - 23762473 23763014 23762797.091 23761946 23764221 - gene protein_coding_gene FALSE TRUE AT1G64040.1 TOPP3 (Type one serine/threonine protein phosphatase 3); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 3 (EC 3.1.3.16) (TOPP3) [Arabidopsis Thaliana] (GB:P48483;GB:Q9SH54); similar to TOPP7 (Type one serine/threonine protein phosphatase 7), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT4G11240.1); similar to Serine/threonine-protein phosphatase PP1 (GB:P48488); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.16637706709235 2.15136090790182 0.0620388251281293 1 2.6762228280975 19.6434111237353 0.16637706709235 0.0542685682026595
AT2G32970_at 5.39858120043648 6.03400081651565 4.74733721356535 4.64764363050076 6.31161778744359 5.43241139524092 5.48853443017546 6.00341510329727 6.66420506897561 5.7483052466201 5.94345776881689 6.27096343362905 5.4939710699846 6.00008593255027 5.66592967607606 5.99981750685281 5.10369391988463 5.95416054872381 5.71214830385591 0.298889935920478 0.279272430543714 0.291041566467457 0.298956965426736 0.279272430543714 0.292929434217687 0.307058165260523 0.287748498994424 0.293737021055721 0.280167600071356 0.289321520934915 0.284043880021288 0.293219246039789 0.287031443004965 0.284403764057584 0.282238335769089 0.305874108508921 0.279272430543714 0.282204345309016 2 2|0 -|/ 13999329 13999688 13999515.625 13998661 14002826 - gene protein_coding_gene FALSE TRUE AT2G32970.1 similar to Os02g0771800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048261.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD16855.1) -0.341961636002170 -2.15056817520730 0.0621169116371103 1 2.67510691661837 11.4307241247546 -0.341961636002170 0.20851492000748
AT2G47070_at 8.49525801070994 8.91175753634667 8.67002761760603 9.00208130540457 9.3484995433723 9.19932221551771 9.50224414469633 9.53142276881789 8.17798930541833 8.1218516340665 8.51541385641753 8.4608512061299 8.815796357153 8.6818564905139 8.64732021396766 8.82898436076328 8.71080563979894 8.70526946024522 8.32650194478408 0.171853754569696 0.176641583822863 0.171853754569696 0.179424583833908 0.182134424901129 0.181476799062576 0.182202347109464 0.183849225050654 0.191513583808701 0.195530247213816 0.174831382204894 0.176508145880733 0.171853754569696 0.173394743794196 0.175636224462564 0.174425302024845 0.177837667120875 0.173763643130568 0.193933364402654 2 2|0 +|/ 19344445 19347564 19346292.389 19343765 19347939 + gene protein_coding_gene FALSE TRUE AT2G47070.1 SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1); DNA binding / transcription factor member of SPL gene family, encodes DNA binding proteins and putative transcription factors. All have the SBP-box, which encodes the SBP-domain, required for and sufficient for interaction with DNA. Identical to Squamosa promoter-binding-like protein 1 (SPL1) [Arabidopsis Thaliana] (GB:Q9SMX9;GB:O80717;GB:O80718;GB:O82651); similar to SPL12 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 12), transcription factor [Arabidopsis thaliana] (TAIR:AT3G60030.1); similar to Os03g0833300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051808.1); similar to SBP [Medicago truncatula] (GB:ABE82410.1); contains InterPro domain SBP; (InterPro:IPR004333); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.203409146016577 2.14956903715538 0.0622154666309693 1 2.67370058419295 17.5223607225822 0.203409146016577 0.0958599088705407
AT1G32340_at 6.78727141682826 6.63058219618682 6.85837430400718 6.9995101729468 6.77857478956427 6.85303792427451 6.1218464242075 5.91680754370863 6.32899892203889 6.25236545894582 6.26276934556222 5.71528620451937 5.97971078365198 6.35538541498633 5.51043283738301 6.1677824786971 6.41982531224708 6.18186718280245 6.17599264246061 0.168347419662108 0.174149635834541 0.179090980973682 0.172932552610507 0.167111223500913 0.176571303809526 0.169707309335523 0.172528482701227 0.180084306795928 0.165824108806165 0.172071646197927 0.174386815898239 0.170537173675648 0.181859980050042 0.179744551299831 0.166497427672233 0.173291647563443 0.168540516384173 0.165824108806165 1 1 - 11663534 11664235 11663877.636 11663050 11666038 - gene protein_coding_gene FALSE TRUE AT1G32340.1 NHL8 (NDR1/HIN1-like 8); protein binding / zinc ion binding Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not detected under normal conditions and in response to cucumber mosaic virus or spermine. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G14250.1); similar to OSJNBa0006A01.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE05472.3); similar to Predicted E3 ubiquitin ligase (ISS) [Ostreococcus tauri] (GB:CAL52288.1); similar to OSJNBa0006A01.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05471.3); contains InterPro domain RWD; (InterPro:IPR006575); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.164963753149069 2.14924861361760 0.062247105589149 1 2.67324960445125 12.7815429895303 0.164963753149069 0.0525062070390041
AT1G75820_at 9.5148816070309 9.7757699334615 9.3613086956842 9.40924409290245 10.2908175009777 10.1522698126044 10.1162769335664 10.2548372361308 10.0146048925022 9.8056465860049 9.82490503653667 10.0008957116292 9.7944476335864 9.80779727154254 9.51206549149316 9.74193284407188 9.23529340466505 9.7079183891465 9.96267314818983 0.0863139122573456 0.082427877956324 0.084422249455729 0.0888533168071076 0.085728178527201 0.0945596002258606 0.086542213644161 0.0850675654734887 0.0918949619803413 0.0839808283097907 0.0813048188706346 0.0809462503580832 0.0828093385065946 0.0842545794370794 0.0920710321500039 0.0835318996839757 0.108692559661535 0.087870459093263 0.0859786438032678 1 1|0 -|/ 28467303 28467868 28467550.8 28467123 28470632 - gene protein_coding_gene FALSE TRUE AT1G75820.1 CLV1 (CLAVATA 1); ATP binding / kinase/ protein serine/threonine kinase Putative receptor kinase with an extracellular leucine-rich domain. Controls shoot and floral meristem size, and contributes to establish and maintain floral meristem identity. Negatively regulated by KAPP (kinase-associated protein phosphatase). Identical to Receptor protein kinase CLAVATA1 precursor (EC 2.7.11.1) (CLV1) [Arabidopsis Thaliana] (GB:Q9SYQ8;GB:O04380;GB:Q9LQT2); similar to BAM2 (big apical meristem 2), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT3G49670.1); similar to BAM1 (big apical meristem 1), ATP binding / kinase/ protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT5G65700.1); similar to BAM3 (big apical meristem 3), ATP binding / protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT4G20270.1); similar to LRR receptor-like kinase [Glycine max] (GB:BAC41332.1); similar to receptor protein kinase-like protein [Glycine max] (GB:AAF59906.1); similar to CLV1-like receptor kinase [Brassica napus] (GB:AAP49010.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.168257985701806 -2.14915772035157 0.0622560833506744 1 2.67312167957377 19.6748249840779 -0.168257985701806 0.0570699912161817
AT3G50380_at 6.75656152645867 7.19663293377415 6.88345281276533 6.45405164997483 7.30404789081051 6.82628645592833 7.17709416659444 7.05661197745279 7.5935540125417 7.20911829669546 6.99251026157134 7.77400339030526 7.12870461212786 7.59557933550425 7.01708359975552 7.54635382260378 6.82657901648367 7.08262380564308 7.8883802061187 0.196883448356013 0.190645439477792 0.195205402397615 0.197376451897335 0.186955105369655 0.204835269943538 0.195153581800119 0.186371131463000 0.202805079584575 0.192400470435663 0.196097834174377 0.183625924184044 0.186692907664183 0.191635011130528 0.194359191044704 0.188490374307936 0.208005670410275 0.191699568466747 0.189580679669921 3 0|3 /|- 18697561 18698043 18697748.1 18697424 18711514 - gene protein_coding_gene FALSE TRUE AT3G50380.1 similar to Os12g0594200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067177.1); similar to vacuolar protein sorting-associated protein vps13 [Asper (GB:XP_751674.1); contains InterPro domain Vacuolar protein sorting-associated protein; (InterPro:IPR009543) -0.249009944993103 -2.14851261044966 0.062319838911885 1 2.67221377477166 14.3613993778622 -0.249009944993103 0.136353474757193
AT4G12460_at 5.25479031652234 4.70469364736579 5.60774348786427 5.15115090134027 6.46616088579943 5.65846032248263 5.67935588838498 5.44880799527417 5.02788258951413 5.18461375064516 5.32374215964184 5.11511905431799 5.4469850507329 5.59237401225922 5.23456877415916 5.80852672368269 5.43347261720935 4.65960331194159 5.20651002427728 0.189765043521715 0.183751428974000 0.183491621999716 0.183059481240778 0.181319595780586 0.190655245944986 0.187325353471184 0.187447053078370 0.189346254555412 0.185636107662218 0.181605052076051 0.192599441500782 0.183578108131742 0.188672368573866 0.182109215540339 0.181711222301288 0.184112855000725 0.185237992273884 0.180527726491244 4 4 + 7395151 7395992 7395599 7391274 7396506 + gene protein_coding_gene FALSE TRUE AT4G12460.1|AT4G12460.2 oxysterol binding| similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G08180.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT2G31020.1); similar to oxysterol-binding family protein [Arabidopsis thaliana] (TAIR:AT4G22540.1); similar to putative oxysterol-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAK15443.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); similar to oxysterol-binding related protein 1 [Petunia integrifolia] (GB:ABB43279.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993)|similar to oxysterol binding [Arabidopsis thaliana] (TAIR:AT4G22540.3); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98451.1); similar to Oxysterol-binding protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98450.1); similar to putative oxysterol binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM97165.2); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648) 0.318048556166199 2.14770899946753 0.0623993482870704 1 2.67108288686181 10.7296293061985 0.318048556166199 0.190879817150166
AT4G33640_at 10.3525044544897 10.5432680952684 10.4797694902586 10.5910756095689 10.8435092038679 10.6426267973889 10.2641995641363 10.4928755933649 10.4910856748597 10.6086414349947 10.8578471290405 10.7068321093412 10.6710314245942 10.7651227134435 10.6112954838014 10.6262287016337 10.5282161679431 10.6550673940760 10.5654713380079 0.0737754984292134 0.0700795577618685 0.0747973811237244 0.0722911968301546 0.0697094492275547 0.073668119989421 0.0724805969375425 0.0708138974595425 0.0717191176838553 0.0692034780340096 0.0702223748187257 0.0690598704012844 0.0740598609280767 0.0696954593390783 0.0725512138546526 0.0690598704012844 0.075128187107342 0.0690598704012844 0.0720714635639754 4 4|0 -|/ 16159778 16160155 16159907.1 16159551 16160330 - gene protein_coding_gene FALSE TRUE AT4G33640.1 similar to hypothetical protein MtrDRAFT_AC148971g9v1 [Medicago truncatula] (GB:ABD28547.1); similar to Os03g0690000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050950.1); contains domain SUBFAMILY NOT NAMED (PTHR22739:SF6); contains domain FAMILY NOT NAMED (PTHR22739) 0.174336169826510 2.14669115232824 0.0625001966079052 1 2.66965065017124 21.1426142459288 0.174336169826510 0.0650801247698002
AT4G35510_at 5.65630949642317 5.51585936164757 5.55016725045965 5.53775468956287 5.67283226027809 6.11341920180659 5.91132994820707 5.83514691425832 4.97767936937066 4.78676648245429 5.63733442450388 5.60326123104894 5.48821359674573 4.93202667186392 5.00571647237372 5.55353565512229 5.27434131082112 5.18719961138862 5.07713076483744 0.201348924929990 0.208885040823589 0.205365781788934 0.200459765532554 0.198542926209361 0.201818452182188 0.20278311785473 0.200959439365425 0.219734041148551 0.212990238381164 0.207963964451425 0.203640542674447 0.199335195056535 0.202539276802318 0.200740725913008 0.205405950883597 0.204820790895987 0.207799302085199 0.205940251950879 4 4 - 16860720 16861259 16860966.455 16860457 16862377 - gene protein_coding_gene FALSE TRUE AT4G35510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17540.1); similar to Os06g0728500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058643.1) 0.188446668286084 2.14572257711456 0.0625963110310017 1 2.66828788741169 10.8653003039742 0.188446668286084 0.0811331166801183
AT2G45140_at 9.21311613407948 9.37753725428225 9.32306407048587 9.55345863661699 9.82320052346018 9.32385342895204 8.8880455227884 9.29336467562253 8.62358118410636 8.602508067749 8.94866871704912 8.59508345208269 8.8041153501717 8.87516918567727 8.5071002420024 8.93884623827625 8.38734061131963 8.56108928778036 8.4316668207962 0.180053008952605 0.178627896285539 0.17715572760142 0.178192335861689 0.171571756860205 0.181819627620920 0.169644622817533 0.173746342993456 0.186246601834414 0.171633391276509 0.166716032040907 0.174486200216928 0.167409840075180 0.174987105544962 0.165476281754925 0.167605566521029 0.179204912173360 0.177815549014476 0.173781810679653 2 2|0 +|/ 18618453 18620000 18619247.625 18617881 18620365 + gene protein_coding_gene FALSE TRUE AT2G45140.1 vesicle-associated membrane protein, putative / VAMP, putative similar to VAP27-1 (VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1), protein binding [Arabidopsis thaliana] (TAIR:AT3G60600.1); similar to Major sperm protein [Medicago truncatula] (GB:ABE80895.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.231234773090003 2.1450956062791 0.0626586041257944 1 2.66740582817339 17.9768360273337 0.231234773090003 0.121600563012385
AT1G01970_at 7.89730249961576 7.9122437470634 7.17252686102869 7.24169697879901 7.8445221353462 7.43343641229447 8.28016496055339 8.19377625079924 7.51249717880462 7.61428961603225 7.72677295537256 8.388728538589 7.44130236167167 7.78749907875999 8.63836788347019 7.91270065341875 7.44234518132451 7.2903099467595 7.50478938360461 0.159855293512360 0.166270612429922 0.161003238705219 0.167861565051933 0.160489962414304 0.166693872200561 0.159454693002798 0.163442618827466 0.182064946917608 0.157989020056986 0.158673747576939 0.158795487713969 0.159441377139936 0.159992299655558 0.161127413748014 0.157888509163187 0.167376059052702 0.176238412009128 0.162405145574486 1 1 + 339367 339872 339589.091 338291 340077 + gene protein_coding_gene FALSE TRUE AT1G01970.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G19525.1); similar to pentatricopeptide repeat protein [Physcomitrella patens] (GB:BAF34329.1); similar to Os07g0661900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060542.1); similar to Os02g0611400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047406.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.181590834433621 -2.14509154946013 0.0626590073909457 1 2.66740012099314 15.4331397562215 -0.181590834433621 0.0737184892036926
AT3G58730_at 10.0267284561744 10.2621745596887 10.2372028781208 10.3382045964169 10.2145011404432 10.1356170465178 10.2660059223741 10.5098597299896 10.1871662558299 10.1364472661218 10.6780746579792 10.5189925225281 10.4447409580701 10.4210726540980 10.6405699497217 10.4740854090692 10.0554161755478 10.3578724554542 9.88501256006564 0.0876612416715916 0.087005797332855 0.0913703386285232 0.0908881496258245 0.0911141692290426 0.091374686104565 0.0880152835486585 0.087005797332855 0.0983223083209213 0.0887762157775374 0.0931526117057159 0.0884029172431277 0.0880510329704305 0.0967910442702589 0.0901185331968136 0.087005797332855 0.098314392892647 0.0901633882430488 0.0906292303999118 3 3 - 21729511 21730045 21729821.364 21729234 21730957 - gene protein_coding_gene FALSE TRUE AT3G58730.1 (VACUOLAR ATP SYNTHASE SUBUNIT D); hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism Identical to Vacuolar ATP synthase subunit D (EC 3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D subunit) (VATD) [Arabidopsis Thaliana] (GB:Q9XGM1;GB:Q9LXS8); similar to mitochondrial ATP synthesis coupled proton transport protein [Solanum melongena] (GB:ABF00095.1); similar to Os04g0643100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054048.1); contains InterPro domain ATPase, V1/A1 complex, subunit D; (InterPro:IPR002699) 0.172250159393710 2.14456024761445 0.0627118429964204 1 2.66665270048235 20.5079843537895 0.172250159393710 0.0627125829886444
AT1G06200_at 9.63482097512613 9.73156644833291 9.75250452911235 9.78872618380055 9.9910924935786 9.75216005263736 9.8321066632189 9.84764402479895 8.93279093907005 9.5423657426638 9.649186812865 9.55618131716555 9.64272587360227 9.62735424014787 9.59773116681327 9.49454233093825 9.44362814138815 9.50837141819667 9.44010599529116 0.102398224147324 0.0997934829692489 0.100523247701320 0.0987114622012299 0.101790059406966 0.105138091361096 0.0995486130570825 0.09902328762906 0.108320178583936 0.104048831751718 0.102668258208247 0.0994301169778867 0.103248239677703 0.103069577944970 0.103815097824735 0.101043997093286 0.103827902932466 0.106889207246268 0.101973501274618 1 1 - 1894643 1895896 1895311.818 1894336 1896934 - gene protein_coding_gene FALSE TRUE AT1G06200.1 serine-type peptidase similar to serine-type peptidase [Arabidopsis thaliana] (TAIR:AT2G31140.1); similar to Mitochondrial inner membrane protease, subunit IMP2 (ISS) [Ostreococcus tauri] (GB:CAL55762.1); similar to OSJNBa0068L06.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01583.2); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056) 0.159731945272144 2.14446316967242 0.0627215016706606 1 2.66651613849333 19.2263540321497 0.159731945272144 0.0451277377292694
AT4G25340_at 5.31420692071629 5.61394657917809 5.21221173169312 5.03184366922744 4.93863220144229 4.52100719986503 5.63627164684765 4.92742990116563 4.16979065210877 4.8135044748721 4.5739164330709 4.59053726065438 4.11014244572921 4.44902602316713 4.70100910585909 4.45578194591135 4.43802025945195 4.05992873773822 4.56882196287840 0.248884114569503 0.252217307516971 0.241398738292246 0.241398738292246 0.255491729637959 0.255046613887321 0.269884737909861 0.262410225506081 0.278199232896123 0.250587141001886 0.250157901007908 0.241398738292246 0.245080949549583 0.252788982774136 0.245277241032081 0.252177949304387 0.256388418328477 0.271417490233459 0.251369720363335 4 4|0 -|/ 12959696 12960783 12960365.375 12959452 12962709 - gene protein_coding_gene FALSE TRUE AT4G25340.1 immunophilin-related / FKBP-type peptidyl-prolyl cis-trans isomerase-related similar to immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative [Arabidopsis thaliana] (TAIR:AT5G05420.1); similar to OSIGBa0140O07.15 [Oryza sativa (indica cultivar-group)] (GB:CAH67247.1); similar to putative immunophilin/FKBP-type peptidyl-prolyl cis-trans isomerase [Helianthus annuus] (GB:AAR23804.1); similar to Os04g0446500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052910.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.271058574129294 -2.14443246928354 0.0627245564782556 1 2.66647295177380 9.61927755113404 -0.271058574129294 0.154711620817438
AT1G74680_at 7.36992761932797 8.14975942048433 7.67064941911105 8.00704167470269 8.56352213979648 8.04919896503718 7.51526806320855 7.21420105057601 7.0839737052859 6.67464117983232 6.77247519244806 7.23858729233576 7.22129653063184 6.91195176491715 6.56869179448995 7.05077987678987 7.36731445847261 7.37278883809387 7.14582561541034 0.219007365185735 0.208763715895699 0.219611340381560 0.208919713803006 0.213452542011107 0.215859455304792 0.207930369225021 0.209729917175925 0.222195489269151 0.222984983578617 0.208264881512335 0.214657953672054 0.209920080449537 0.207492912836630 0.215089711504726 0.206198443964433 0.209673007130330 0.209904066701023 0.213788174665787 1 1 + 28063999 28064553 28064350.727 28062849 28064780 + gene protein_coding_gene FALSE TRUE AT1G74680.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT3G45400.1); similar to secondary cell wall-related glycosyltransferase family 47 [Populus tremula x Populus tremuloides] (GB:AAX33321.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.302576448137751 2.14323663945928 0.0628436594018429 1 2.6647908683285 14.8330123200465 0.302576448137751 0.179549285335241
AT1G22520_at 6.69903132486498 6.6261406672198 6.72219302222182 6.42632600859486 6.79946529234745 6.37351083233916 6.95076331268985 6.7776017519792 6.17081581364905 5.97880758124845 6.65070985417761 6.88898782081617 6.40316016090354 6.66157717941725 6.95481789252857 6.46891693777272 5.95838238290688 6.14451152058527 5.63627221578098 0.144698485096133 0.141422027842186 0.149229811574183 0.137946096452172 0.141925127498806 0.143976962058116 0.147752038816779 0.143098003983242 0.147735724273230 0.141938942324587 0.14487454914716 0.141018195334939 0.141057714678649 0.155259751454654 0.138069039906494 0.14170965191505 0.151381985231774 0.165734169020795 0.145862304383525 1 1|0 -|/ 7953798 7954255 7953972.2 7953011 7954407 - gene protein_coding_gene FALSE TRUE AT1G22520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G72170.1); similar to Os03g0840900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051850.1); similar to hypothetical protein MtrDRAFT_AC125481g48v1 [Medicago truncatula] (GB:ABE94329.1); contains InterPro domain Protein of unknown function DUF543; (InterPro:IPR007512) 0.202370311549853 2.14297168557105 0.0628700783253622 1 2.66441820655835 12.8943864459645 0.202370311549853 0.0954585064346467
AT3G14270_at 8.26157352918751 8.49328749883487 8.6387263516926 8.90962776958466 9.20328870758065 8.85189008416611 8.77031950243849 8.80407760716786 8.90537706046285 9.08489184671755 9.20868078163446 8.87496756017623 9.02117785532084 9.2007971260335 8.47315707487541 9.23519793643196 9.2367389180236 9.2717941469114 8.9996018981367 0.124122412875601 0.123415825689569 0.129289787708226 0.126462701304380 0.120172039191909 0.120361728895598 0.129416412340587 0.125569904517080 0.130646976028590 0.121648124021466 0.129715577017203 0.118776107953884 0.123539575949041 0.124362598224578 0.132081654801600 0.118776107953884 0.120164108185828 0.118776107953884 0.128960019457677 3 3|0 +|/ 4760612 4761157 4760952.3 4753932 4761463 + gene protein_coding_gene FALSE TRUE AT3G14270.1 phosphatidylinositol-4-phosphate 5-kinase family protein Encodes a FYVE domain protein containing the following domains: FYVE + Chaperonin + PIP5K. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33240.2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34260.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71010.1); similar to putative phosphatidylinositol 3,5-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP12926.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.193629508501193 2.14245721849882 0.0629214075631998 1 2.66369463053939 17.7725676446807 0.193629508501193 0.0868209477735088
AT1G50370_at 9.61902630636806 9.62144716283869 9.74752147442608 9.7515127660254 9.57676076315134 9.73445054060555 9.52992726491969 9.82513728576246 8.60027903270478 8.6632419660615 9.09003285783116 8.91004993865498 9.29115989169459 8.85707015248538 8.73496339571555 9.1392220133312 9.20221585520415 8.6575042686402 8.84327540501133 0.166082279908767 0.163576422601358 0.166253686892748 0.171105468844876 0.165677869076327 0.169532717705889 0.163882437273723 0.163931374528943 0.180684563684051 0.178910605589256 0.178449030067512 0.174634062969871 0.165670447523662 0.169105451987803 0.175852696664800 0.166557259747897 0.173674881440779 0.178346674369864 0.172409160219785 1 1|0 +|/ 18664101 18665315 18664579.444 18662315 18665642 + gene protein_coding_gene FALSE TRUE AT1G50370.1 serine/threonine protein phosphatase, putative similar to ATFYPP3 (SERINE/THREONINE PROTEIN PHOSPHATASE), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G19980.1); similar to Ser/Thr protein phosphatase homologous to PPX [Malus x domestica] (GB:CAA87385.1); similar to serine/threonine protein phosphatase 2A [Pisum sativum] (GB:AAM21172.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.168344354924328 2.14209743291751 0.0629573283048864 1 2.66318863094778 18.5194943278224 0.168344354924328 0.0579246851310867
AT4G33666_at 9.88874848909004 10.2285861198685 9.58501071533155 9.85673413729365 10.1835553780281 9.99562030589227 10.6484577794324 11.3351821835351 11.4402948973973 11.3742132649004 11.7629559511527 11.692978566489 11.3448026894676 11.6133609602048 11.3171575186788 11.7056836195566 11.0447360402216 11.5094764551281 11.3693601573541 0.125396822367033 0.112565748297785 0.128011896475287 0.121715982631599 0.108364040639660 0.117544818822559 0.117992453439528 0.111685194035531 0.113660638072389 0.111568158575385 0.109174745277959 0.110474514024346 0.109675146236819 0.112740504927801 0.115538782628637 0.111415559833622 0.117972847668301 0.108265964263098 0.108265964263098 4 4 + 16169171 16169368 16169282.364 16169051 16169538 + gene protein_coding_gene FALSE TRUE AT4G33666.1 unknown protein -0.25787115347499 -2.14090714161408 0.0630763090369005 1 2.66151475277198 21.6619952627238 -0.25787115347499 0.144397835193089
AT3G61820_at 8.32926676036528 8.75330773877325 6.0381153408505 7.02554465112566 6.33418237927487 6.50730794666028 7.572898733252 8.28173697860598 6.54513986680705 6.93496314125629 7.71412649851901 9.2949301055342 7.03451752030628 7.8748023559555 8.70197591677395 7.85357434063902 7.22554496277269 7.75149083995476 7.21386024370175 0.214684892998579 0.206947796024669 0.225790639223548 0.207432231380481 0.214911618752421 0.207165407561152 0.208471669765636 0.213306814657655 0.229752852508395 0.212709560847478 0.210786820456709 0.207978627478223 0.210942220114281 0.202891837605744 0.21355450284149 0.202891837605744 0.207457177515348 0.210470373777787 0.205901404953599 3 3 - 22891090 22891592 22891350.455 22890779 22892605 - gene protein_coding_gene FALSE TRUE AT3G61820.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G01300.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAT38006.1); similar to Os05g0590000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056485.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.362316203151367 -2.14084325837927 0.0630827009719989 1 2.66142492131198 14.7699741001861 -0.362316203151367 0.224788050720058
AT1G32060_at 12.7174809630643 12.8656029225126 12.7039830513413 12.7834890954127 12.7927523507999 12.5758464549787 13.5196247152722 13.5001003751934 13.3388407480208 13.6389926336383 13.6613585799752 13.6335037439361 13.5249970388369 13.3457289882848 13.5143041077077 13.7274443001603 13.4851719582392 13.6700077630847 13.3892256926160 0.0752625390821218 0.070626196755711 0.0739182700912426 0.0721717495432009 0.069925848782655 0.076762902562723 0.0754976463162209 0.0704077843819978 0.0822588745204936 0.069925848782655 0.069925848782655 0.069925848782655 0.070823917283376 0.0741144472475656 0.0737524669991593 0.069925848782655 0.07829459923355 0.0746812589950616 0.069925848782655 1 1|0 +|/ 11533683 11534338 11534072 11532517 11534619 + gene protein_coding_gene FALSE TRUE AT1G32060.1 PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding Identical to Phosphoribulokinase, chloroplast precursor (EC 2.7.1.19) (Phosphopentokinase) (PRKase) (PRK) [Arabidopsis Thaliana] (GB:P25697); similar to uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative [Arabidopsis thaliana] (TAIR:AT3G27440.1); similar to Phosphoribulokinase, chloroplast precursor (Phosphopentokinase) (PRKase) (PRK) (GB:P26302); similar to phosphoribulokinase; ribulose-5-phosphate kinase [Triticum aestivum] (GB:CAA41020.1); similar to phosphoribulokinase (EC 2.7.1.19) - wheat (GB:S16585); contains InterPro domain Phosphoribulokinase; (InterPro:IPR006082); contains InterPro domain Phosphoribulokinase/uridine kinase; (InterPro:IPR006083) -0.161028151970522 -2.14081191596212 0.0630858372170871 1 2.66138084839054 26.4453604501318 -0.161028151970522 0.0476106981544222
AT1G77140_at 4.78173214894804 5.13937465811642 4.72218559461738 4.94888132719743 5.40119747626026 5.19543254333624 5.06452771907836 4.36599741412232 4.66630334268973 4.37048440709116 5.36056310268583 4.77364569604325 4.85827437679 4.43012677557937 5.23796097744629 4.75584800227416 4.67900253607990 4.79586382653958 4.67772840916009 0.209296775198265 0.211495565711919 0.218772137064199 0.216820185396295 0.22216407084162 0.225764385380708 0.213021486470543 0.212973788592505 0.229622298978497 0.221500545265762 0.206485356762519 0.206630942638480 0.209851786361403 0.210274496042322 0.206485356762519 0.206485356762519 0.228496283085217 0.210799118004649 0.215997253419721 1 1|0 +|/ 28991361 28992259 28991794.111 28988919 28992877 + gene protein_coding_gene FALSE TRUE AT1G77140.1 VPS45 (VACUOLAR PROTEIN SORTING 45); protein transporter A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face. Identical to Vacuolar protein sorting-associated protein 45 homolog (AtVPS45) (VPS45) [Arabidopsis Thaliana] (GB:O49048;GB:O80650); similar to SEC1A, protein transporter [Arabidopsis thaliana] (TAIR:AT1G02010.1); similar to vacuolar protein sorting 45A [Xenopus tropicalis] (GB:NP_001072504.1); similar to Os02g0437800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046739.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.259460762826341 2.14010746124751 0.0631563679257859 1 2.66039030073918 9.66887413420628 0.259460762826341 0.145775615174422
AT1G07110_at 10.9336093073798 10.872015991284 10.7083343108450 10.6184741307677 11.1185058928248 10.6707911315275 11.2688130453588 11.1313323910499 10.5126048829458 10.9434705655177 10.4941854806843 10.6092301793357 10.7394310985094 10.6905101353638 10.4818077491710 10.8829826497689 10.8054010448155 10.4865923735527 10.8124150179621 0.0734227810240515 0.0715500817047283 0.0746384345396922 0.0741570978591497 0.071806684556623 0.0750473894754727 0.0746537132836198 0.073620381916994 0.0874544228916676 0.0723689294420713 0.073436867253307 0.0713500309835304 0.0713500309835304 0.0713500309835304 0.0763692223766062 0.0724789092524411 0.0761485539376679 0.0757260088516987 0.0724441593975773 1 1|0 -|/ 2178577 2180306 2179140.429 2178103 2184147 - gene protein_coding_gene FALSE TRUE AT1G07110.1 F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase Encodes the bifunctional enzyme fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase. similar to fructose-6-phosphate 2-kinase-related / fructose-2,6-bisphosphatase-related [Arabidopsis thaliana] (TAIR:AT3G30200.1); similar to fructose-6-phosphate 2-kinase /fructose-2,6-bisphosphatase [Spinacia oleracea] (GB:AAC18055.1); similar to fructose-6-phosphate 2-kinase/fructose-2,6-bisphosphatase [Bruguiera gymnorrhiza] (GB:BAB55655.1); similar to 'putative 6-phosphofructo-2-kinase (EC 2.7.1.105) / fructose-2, 6-bisphosphate 2-phosphatase (EC 3.1.3.46)' [Oryza sativa (japonica cultivar-group)] (GB:AAT07663.1); contains InterPro domain Fructose-2,6-bisphosphatase; (InterPro:IPR003094); contains InterPro domain 6-phosphofructo-2-kinase; (InterPro:IPR013079); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.189906108592638 -2.13987087825196 0.0631800721297175 1 2.66005765345544 21.6177000639840 -0.189906108592638 0.0832135697153988
AT3G25540_at 6.4242101198595 6.49213649616875 6.69655803724438 6.21151307956488 7.25211426508488 5.8632354826341 6.3966248704776 6.1453995143381 4.71834838716993 4.97049163599802 5.57014963338643 5.59120949770296 5.54531918362802 5.66277371510626 5.34363793769636 5.71463552209141 5.03314561223167 5.50038598978607 4.77055228016519 0.253229969084405 0.242074888858645 0.253996627610497 0.247447743631254 0.244725685360428 0.252767998329798 0.252294624270334 0.243094076125529 0.265008513807868 0.247119394810128 0.244952441155161 0.246395880465747 0.248404012713369 0.249321629298261 0.259464470192297 0.242659058776217 0.258861766339260 0.250627535181383 0.247037264170814 3 3|0 +|/ 9276733 9277281 9276935.444 9275813 9277922 + gene protein_coding_gene FALSE TRUE AT3G25540.1 LAG1 (Longevity assurance gene 1) LAG1 homolog 1 Identical to LAG1 longevity assurance homolog 1 (LAG1 homolog 1) (LAG1) [Arabidopsis Thaliana] (GB:Q9LDF2); similar to LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) [Arabidopsis thaliana] (TAIR:AT1G13580.2); similar to ASC1-like protein (Alternaria stem canker resistance-like protein) (GB:Q8W4Y5); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Longevity-assurance protein (LAG1); (InterPro:IPR005547) 0.408311083965168 2.13980265224716 0.0631869095828631 1 2.65996172591352 11.5927012686205 0.408311083965168 0.258540485516369
AT4G14480_at 5.01511806696345 5.49001146025594 4.40566699731465 4.43059658379049 5.6666010158512 5.34754625236596 4.52324886754714 4.8856897573155 4.82453342247657 4.39458985561285 4.69412187722081 5.16609020760223 3.81510736671751 3.7297824495688 4.15773221810555 4.25225724983096 3.83781561799806 3.88046561114706 4.66222153351925 0.268706650913603 0.268832913160904 0.260727961639202 0.267887965203292 0.264309298420229 0.283428520568259 0.260727961639202 0.269371494575932 0.271995741582133 0.260727961639202 0.260727961639202 0.262154408445181 0.264218321217635 0.260727961639202 0.266864837776206 0.260727961639202 0.276839241780832 0.265380395756461 0.262688011930508 4 4 - 8330098 8330652 8330436.1 8330077 8331540 - gene protein_coding_gene FALSE TRUE AT4G14480.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14720.1); similar to Os03g0678100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050891.1); similar to putative Ste-20 related kinase, 3'-partial [Oryza sativa] (GB:AAL54869.1); similar to Os06g0486400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057665.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.225678844059477 -2.1392601640372 0.0632413022373141 1 2.65919899827325 9.37995313116392 -0.225678844059477 0.117282627384046
AT2G32860_at 8.0258498849548 7.9662526984528 7.81452284008692 7.64582900687562 8.37983464374273 7.85443931259063 9.03525836397141 8.71125146761829 8.5284173883001 8.36446178391448 8.90547837645858 9.1521493245598 8.3794623560375 8.43875044091288 9.00670873877694 8.87049854406784 8.01587111189394 8.23105033041628 8.76195249045609 0.130123888504566 0.124475074432033 0.130231622407939 0.134629278593095 0.135027177562067 0.129246165830475 0.131522201663888 0.125509891649613 0.131289152618275 0.121767010694603 0.122280266349778 0.124119631900688 0.130347204436770 0.136054690092466 0.122572377716900 0.125608665382771 0.127964656997726 0.132404771256775 0.128416832137171 2 2 + 13949483 13950628 13950253.182 13947264 13950881 + gene protein_coding_gene FALSE TRUE AT2G32860.1|AT2G32860.2 glycosyl hydrolase family 1 protein similar to DIN2 (DARK INDUCIBLE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G60140.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85996.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to DIN2 (DARK INDUCIBLE 2), hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G60140.1); similar to OSIGBa0106G07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67305.1); similar to putative prunasin hydrolase isoform PHA precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD61620.1); similar to OSJNBa0022H21.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE05483.2); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.218805527129219 -2.13848410554484 0.0633191933845867 1 2.65810795254493 16.7674581308437 -0.218805527129219 0.111217771597712
AT3G14650_at 8.99929095247604 9.34163545784704 9.20889119620366 9.35565203357063 9.792641365203 9.54936945457665 9.91606136355224 9.99614417825471 9.21042203146586 9.56458651447804 8.83239726572554 8.94755500463078 9.43332905658387 8.85161928032997 8.72912698526214 9.59611821006714 9.31744023784911 9.15348561204021 9.3981950903115 0.124549466724499 0.129263957961552 0.133046863289046 0.133170217141939 0.129921272200564 0.128214995020420 0.128803040121936 0.130672932425455 0.131070577715145 0.127796968195925 0.129772724483955 0.124549466724499 0.128317674715204 0.136982734448298 0.134149647802155 0.124695424888659 0.138239329571854 0.127085747474547 0.132532434964324 3 3 + 4923550 4924056 4923823.273 4922138 4924699 + gene protein_coding_gene FALSE TRUE AT3G14650.1 CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.185039198917363 -2.13771679924969 0.0633962982329728 1 2.65702930072885 18.7693116678669 -0.185039198917363 0.0782262562104108
AT1G54610_at 8.21815567491625 8.3926741417626 8.40526147393296 8.64826601950502 8.82608374636612 8.78342353945495 8.47133770822157 8.40294939636079 8.56841399303702 8.40810351396288 8.50280726354864 8.36706456462737 8.56790458559136 8.5151152041546 8.2429994574051 8.46899355655534 8.5009786066462 8.7675981000706 8.39307301526255 0.0950588492062675 0.0923843228069059 0.097623808109084 0.0975530081372674 0.0928832857824118 0.106837717955826 0.0985278100742284 0.0994367311141808 0.0981431496487612 0.098748026844716 0.0977695065510206 0.0947886348838367 0.096569048010380 0.095007734266418 0.0958312942275513 0.0923843228069059 0.0947126725939482 0.0930636763750736 0.0992210706713844 1 1 - 20397692 20399106 20398383.727 20397429 20400860 - gene protein_coding_gene FALSE TRUE AT1G54610.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G05050.1); similar to Protein kinase [Medicago truncatula] (GB:ABE83648.1); similar to CRK1 protein [Beta vulgaris subsp. vulgaris] (GB:CAB89490.1); similar to putative CRK1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD89473.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.164815978868440 2.13713387811311 0.0634549359391223 1 2.6562099104905 16.9926253832712 0.164815978868440 0.0536203554529419
AT4G24510_at 6.3151286170846 6.74701089090688 4.42594762803195 4.82058967000043 6.7395719258787 6.65141664212719 6.70157447338889 7.29260241483793 8.38598544745706 7.59500426691448 9.54323325458616 9.37062770669604 8.40960336003179 9.24731146397637 8.97256421897897 7.59139167257628 6.95470029258038 8.15425895801695 7.8429561464935 0.211616019324549 0.208309743669138 0.217455390789838 0.208717340106464 0.198634177676553 0.213127643194719 0.200129486648009 0.202374696096566 0.208235504734749 0.204230743057270 0.212578251079681 0.213409041401406 0.216817938743036 0.205504040323356 0.206517548415155 0.208272629269440 0.209747717556397 0.206431996623311 0.208568127083427 4 4 + 12661990 12662485 12662205.727 12660759 12662666 + gene protein_coding_gene FALSE TRUE AT4G24510.1 CER2 (ECERIFERUM 2); transferase Involved in C28 to C30 fatty acid elongation. similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT3G23840.1); similar to Os04g0611200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053836.1); similar to orf [Zea mays] (GB:CAA61258.1); contains InterPro domain Transferase; (InterPro:IPR003480) -0.257775776784824 -2.13684419935054 0.0634840952569868 1 2.65580273912288 14.4476186092248 -0.257775776784824 0.144720683250369
AT4G37270_at 8.47134560110863 8.58886675733405 8.4362029828138 8.53220732534892 8.32649230307652 7.8833956053356 8.45495777726893 8.5047646409659 8.9571701557769 8.30599694768839 8.57907086352266 8.4434416475114 8.0569800269116 8.5635750586887 8.19396467231818 8.54873204931546 7.75062068712602 8.62063681009358 8.26748158850515 0.144561739778241 0.142822251782954 0.150330906665204 0.147288295072111 0.139951353526624 0.151776464864976 0.145344762596788 0.144053615303328 0.148768414939509 0.145427009593399 0.139401232164102 0.145081657656509 0.142614776532824 0.144262024051561 0.145419678203984 0.14068055330121 0.161764065486705 0.149346945386726 0.144319069637463 4 4|0 -|/ 17542014 17542726 17542376.7 17540484 17546478 - gene protein_coding_gene FALSE TRUE AT4G37270.1 HMA1 (Heavy metal ATPase 1); copper-exporting ATPase Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions. Identical to Putative cadmium/zinc-transporting ATPase HMA1, chloroplast precursor (EC 3.6.3.3) (EC 3.6.3.5) (HMA1) [Arabidopsis Thaliana] (GB:Q9M3H5;GB:Q5JZZ1;GB:Q9SW66); similar to HMA2 (Heavy metal ATPase 2), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT4G30110.1); similar to putative cadmium-transporting ATPase [Glycine max] (GB:AAB81947.1); similar to Os06g0690700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058417.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; (InterPro:IPR006404); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.187998821873265 -2.13659246032780 0.0635094461562455 1 2.65544890603628 16.8272011029529 -0.187998821873265 0.0815091991615188
AT3G46980_at 7.00967737318811 7.48131080214622 6.94407216464623 7.06871346619637 7.65698790838669 6.88489481856665 7.76883460395563 8.18800858583633 7.10181731785054 7.0568721186347 6.89086977008876 6.7674858216574 6.94380937284457 7.30111086266545 7.1844567348811 6.97803758656256 6.30834615384428 6.85055158966977 6.89558607095766 0.202837242313706 0.196953259235529 0.19794394747483 0.203529150417981 0.195092015507899 0.208181372194593 0.206339751851195 0.195894575109577 0.207787180797486 0.203811219143175 0.195092015507899 0.195092015507899 0.203671547436799 0.211070706958962 0.204801340129379 0.199435045044727 0.219247898895067 0.201732881636284 0.206690254942597 3 3 - 17318437 17319262 17318773 17317988 17320923 - gene protein_coding_gene FALSE TRUE AT3G46980.1|AT3G46980.2|AT3G46980.3 transporter-related|carbohydrate transporter/ sugar porter similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G38060.1); similar to putative glutamate transporter [Oryza sativa (japonica cultivar-group)] (GB:BAB84388.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.294149550560076 -2.13509008132758 0.0636609460857991 1 2.65333742946734 14.3359001265358 -0.294149550560076 0.173901262736660
AT2G33250_at 8.4679872227498 8.79182513746647 8.83266985064538 8.87678669458582 8.88484412096277 9.12550682376646 8.97714509736254 9.44199425465652 9.46571791416043 9.73377114448827 9.22734035193803 9.01575541327014 9.25577729209222 9.4329359097118 8.86217385065234 9.72144809411023 9.39001156276744 9.16324445607786 9.88781997959413 0.133893875402372 0.127813564995911 0.140135782933931 0.129354624421458 0.132771210558540 0.140590777554195 0.140767420535585 0.131855590188639 0.146777179375588 0.126393237611280 0.129542629064802 0.129994272729135 0.131409569329625 0.128603548391552 0.14260992727441 0.127822692436333 0.143255526420588 0.132289161700112 0.128657885801881 2 2 + 14104871 14105707 14105418.636 14104509 14105788 + gene protein_coding_gene FALSE TRUE AT2G33250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04310.1); similar to Os01g0680600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043873.1) -0.213484934327746 -2.13382485619057 0.0637888051356471 1 2.65155952058674 18.4020226731454 -0.213484934327746 0.106793176701724
AT4G16515_at 5.4596446814569 4.99493909835648 3.95925703615063 3.53126236869584 4.36079568110332 4.74640880979351 4.76219702225411 5.24957840398853 4.16095690327715 4.80237712849634 6.59957646435556 8.13910737447088 6.52866140124264 5.99629164076666 8.40654771971366 6.47781741205683 5.30650413426227 6.61416019414742 6.8027925709796 0.270857719164458 0.267659486744354 0.284505452289471 0.282917440343379 0.267709602280539 0.267659486744354 0.267886156754976 0.27300969957037 0.282855826993559 0.267659486744354 0.268024313195605 0.271995564152217 0.270606143826126 0.275302952337217 0.274206488405116 0.267659486744354 0.269065788153183 0.275433175914311 0.268706643683625 4 4 - 9305413 9305645 9305538.364 9305277 9305786 - gene protein_coding_gene FALSE TRUE AT4G16515.1 unknown protein 0.268024465398889 2.13368325777855 0.0638031301490005 1 2.65136056006592 10.6399898011639 0.268024465398889 0.153362836739765
AT4G01370_at 9.6851071267856 9.82554504329472 9.81211634384155 9.86078510674742 9.42936251445562 8.9648135730293 9.041903661134 8.95207660804906 8.68480631268193 8.41696662003269 8.93159553014445 9.2075219013247 8.61970622690213 9.03388651181401 8.73701684507486 8.7347763518628 8.1266353797539 8.23117675363607 8.2773926441408 0.186971467752653 0.185314405007281 0.18732003603634 0.188294689979104 0.186584416025125 0.196380081160294 0.179879383861646 0.200708413311268 0.209994006806087 0.189212345019124 0.181429181915077 0.184549547241726 0.185730248268512 0.183518903965621 0.186012060137525 0.18612463412754 0.219086800313858 0.198961537547596 0.188583582194889 4 4 + 568155 568800 568499.091 567095 569088 + gene protein_coding_gene FALSE TRUE AT4G01370.1 ATMPK4 (MAP KINASE 4); MAP kinase/ kinase Encodes a nuclear and cytoplasmically localized MAP kinase involved in mediating responses to pathogens. Identical to Mitogen-activated protein kinase 4 (EC 2.7.11.24) (MAP kinase 4) (AtMPK4) (MPK4) [Arabidopsis Thaliana] (GB:Q39024;GB:O04597;GB:Q45V20;GB:Q9M136); similar to ATMPK12 (Arabidopsis thaliana MAP kinase 12), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT2G46070.1); similar to double HA-tagged mitogen activated protein kinase 4 [synthetic construct] (GB:ABG54331.1); similar to double HA-tagged mitogen activated protein kinase 11 [synthetic construct] (GB:ABG54338.1); similar to mitogen-activated protein kinase 4 [Brassica napus] (GB:ABB69023.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain MAP kinase; (InterPro:IPR003527) 0.191839426657470 2.13335600697893 0.0638362489812841 1 2.65090075031725 18.0277193954251 0.191839426657470 0.0858264034349793
AT3G08680_at 5.71379302991332 5.85709060238587 4.64430375803924 4.67731468283228 5.19038230608282 5.86860440766577 6.04006852177288 6.25755602387758 6.67120506641779 6.10424914707401 7.34018730702426 7.31652668702443 6.59855522208037 6.8812735102608 7.19654356194613 6.40877406367663 5.85587403865322 6.90743939122753 6.4566954837321 0.191248268303207 0.188511387946791 0.189217446532136 0.200782535961218 0.184463372255210 0.190999733681596 0.195433177913581 0.189533258970382 0.196189711878884 0.184227261804047 0.180990713699144 0.192539011375528 0.185630150989703 0.183995656455548 0.187332327553836 0.184230744284592 0.198257122165347 0.185260358477836 0.180990713699144 3 3 + 2640032 2640572 2640290.091 2637566 2640844 + gene protein_coding_gene FALSE TRUE AT3G08680.1|AT3G08680.2 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G58300.1); similar to Os01g0819100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044637.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB62593.1); similar to Os05g0480400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055854.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.234772799418508 -2.13238848837615 0.0639342631760118 1 2.64954141631609 12.1430708108102 -0.234772799418508 0.125856072754783
AT3G62720_at 4.79334688544261 5.08316236085416 4.38779955435774 4.01786862447186 4.47275886306554 4.87075194176415 5.1861041036291 5.15004251429504 6.40896615171236 4.60390148773083 6.8123222996352 5.68341580655677 5.76378909159027 5.98648301318561 5.72336774045895 4.94381048204818 4.43451281063486 5.29944277428365 5.16148504446361 0.243027113352524 0.242703887733069 0.24505923817942 0.238675473161701 0.240150014607739 0.242763065106282 0.238675473161701 0.241324840777390 0.244501212632118 0.241289390611562 0.246612648700080 0.241692690055576 0.238675473161701 0.243087552859531 0.238675473161701 0.238858619958048 0.248073398395607 0.243951734311377 0.242284642657065 3 3 + 23213109 23213655 23213441.545 23212093 23213889 + gene protein_coding_gene FALSE TRUE AT3G62720.1|AT3G62720.2 ATXT1; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups|ATXT1; transferase/ transferase, transferring glycosyl groups Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. Identical to Xyloglucan 6-xylosyltransferase (EC 2.4.2.39) (AtXT1) (XT1) [Arabidopsis Thaliana] (GB:Q9LZJ3); similar to ATXT2, UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G02500.1); similar to alpha-1,6-xylosyltransferase [Gossypium raimondii] (GB:CAI11451.1); similar to alpha-1,6-xylosyltransferase [Vitis vinifera] (GB:CAI11449.1); similar to Glycosyltransferase 5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95475.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.213213556238410 -2.13153721417092 0.0640206227627141 1 2.64834552073019 10.2314013044524 -0.213213556238410 0.106753946591064
AT2G25280_at 6.7847002817231 7.46140147805234 7.57393122271367 7.35164156868247 7.55640286167207 7.33071788358489 6.91836550415824 6.99319862354432 6.52052201873962 6.42850679287783 6.53384180272637 6.23907916165984 6.27829557198678 6.39634212219767 6.65448862821101 6.6394533763563 6.43679507083988 6.26278386365477 6.14654911099203 0.214550172972748 0.210292316513627 0.210111941905564 0.213582668734655 0.205173626640760 0.214498389406665 0.214206488922937 0.205282098499021 0.206138000639599 0.213638275070319 0.201618277399962 0.204328894630699 0.212217422839513 0.210210080442869 0.209044596230381 0.200984247290142 0.218916012279423 0.204882667929037 0.207614671512546 2 2|0 -|/ 10769732 10770906 10770388.7 10769434 10771889 - gene protein_coding_gene FALSE TRUE AT2G25280.1 similar to Os08g0299000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061484.1); similar to CG8031-PA [Drosophila melanogaster] (GB:NP_650252.1); contains InterPro domain Protein of unknown function DUF52; (InterPro:IPR002737) 0.239349610564011 2.1305800402735 0.0641178616137386 1 2.64700098696774 13.6439587233033 0.239349610564011 0.129949062553542
AT1G74300_at 5.85396737431327 6.07881161819268 5.67450522580513 5.45312436408395 5.67880098989912 5.28888478526564 5.00448112976553 5.68976375962224 5.455585100801 5.28059086069044 4.68943416985075 4.41849922414394 5.26090485124335 5.62659963350317 4.0134264564889 5.14479175561469 5.6274769161521 5.23893155903174 5.43051248802865 0.249023063078312 0.235377004653443 0.245552535521814 0.231279987172314 0.225552000019646 0.236516562051743 0.238617906291101 0.242552550517799 0.234724985065639 0.226225631551434 0.22856172284899 0.225602455388382 0.23199344169056 0.235875366738273 0.238937389301556 0.226791433780938 0.234840645241794 0.231633297917336 0.235840347389767 1 1 + 27939756 27940080 27939909.182 27938959 27940269 + gene protein_coding_gene FALSE TRUE AT1G74300.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT1G74280.1); similar to Os02g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047024.1); similar to H0717B12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67158.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.259657604148209 -2.12974949789376 0.0642023528373362 1 2.64583444562104 10.7859945161653 -0.259657604148209 0.146965225103506
AT1G67865_at 12.9344890975553 12.9940644969189 13.7819237208669 13.8709249544481 13.5909780892591 13.5325502113337 13.7136722504723 13.7305394049968 13.2392319772697 13.6704156539532 13.2754868991492 12.975881377084 13.5776493370843 13.3369636944281 12.8013860103016 13.7511011741505 13.9554525334145 13.3995555097197 13.4108580507061 0.0648560775498065 0.0652076606964738 0.0694608252939156 0.0690789395668414 0.0676950790145525 0.0664343546755603 0.0689591790664889 0.066716438366118 0.0716405834406551 0.0648560775498065 0.0691077367151211 0.0677254491322135 0.0663038205708535 0.0698808567356778 0.0738553075223233 0.0648560775498065 0.0717139093590498 0.067094375643698 0.0654664831508306 1 1 - 25450150 25450315 25450228.818 25449952 25450400 - gene protein_coding_gene FALSE TRUE AT1G67865.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67860.1) 0.147459468882311 2.12958961726132 0.064218629991425 1 2.64560989689458 26.9308193420111 0.147459468882311 0.0213136793724748
AT3G47370_at 9.11244594041141 8.95971610390132 8.95146568523081 8.96494953257795 8.27382750647844 8.32534549469695 9.1584670308058 9.34542715944303 8.38684680739036 8.09570328071609 8.37307386381327 8.90903561664978 8.31935622788623 8.21787281094826 9.19246346365768 8.11880691610985 8.2112202393742 7.99417930944226 8.16632875458613 0.121161593822365 0.114597626763980 0.118748352623527 0.115434557868346 0.120299532518601 0.126559800772141 0.120002706274973 0.118953450813916 0.122722806714887 0.125045804348000 0.119241385918705 0.115307586215201 0.119803239788349 0.117678263749806 0.115096501914944 0.118610903185225 0.126090054544087 0.125025871800512 0.116428939814916 3 3 - 17464659 17465396 17464970.273 17464463 17465706 - gene protein_coding_gene FALSE TRUE AT3G47370.1|AT3G47370.2|AT3G47370.3 40S ribosomal protein S20 (RPS20B)|structural constituent of ribosome Identical to 40S ribosomal protein S20-2 (RPS20B) [Arabidopsis Thaliana] (GB:Q9STY6); similar to 40S ribosomal protein S20 (RPS20A) [Arabidopsis thaliana] (TAIR:AT3G45030.1); similar to 40S ribosomal protein S20 (RPS20C) [Arabidopsis thaliana] (TAIR:AT5G62300.2); similar to Os10g0170200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064232.1); similar to Os03g0249400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049560.1); similar to 40S subunit ribosomal protein [Oryza sativa (japonica cultivar-group)] (GB:BAA02157.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, eukaryotic and archaeal form; (InterPro:IPR005729) -0.157204447736675 -2.12946021791083 0.0642318068512042 1 2.64542816132532 17.2031025584679 -0.157204447736675 0.0427821125114796
AT3G23610_at 5.06492156428838 5.55049441452101 5.49396146497946 5.37110187570906 6.17050535808444 5.77320852139905 5.55028993785143 5.3128654489233 4.25314026414663 5.08700528261694 4.97733417827434 4.86079683255798 5.02298949933777 4.85566376320181 4.38197036830232 5.18403284283383 4.65115678475512 5.12588646179935 4.9526461837462 0.232413499172203 0.229371596659490 0.231845990037174 0.234535474397952 0.226205523756251 0.230317398692436 0.231278943403639 0.241849046711411 0.258652419583443 0.228374749823329 0.227639640911729 0.234770818816986 0.228291819910901 0.227324706120648 0.234185993238662 0.227433228313695 0.241613501517729 0.244359951469462 0.228336395054228 3 3 + 8478532 8479503 8479052.636 8478129 8479864 + gene protein_coding_gene FALSE TRUE AT3G23610.1 dual specificity protein phosphatase (DsPTP1) similar to dual specificity protein phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G06110.2); similar to dual specificity protein tyrosine phosphatase 1 [Solanum tuberosum] (GB:BAE44441.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.225383197429934 2.12858044624659 0.0643214648290355 1 2.64419263012685 10.3592899489959 0.225383197429934 0.118019047647530
AT1G69960_at 7.99628461853367 8.2146476581498 8.22490040898554 8.20710740866486 8.75095150473864 8.19829352522415 8.30960235034065 7.9040318768371 7.88132275384328 7.12583151584581 7.90645507969754 8.04595436106507 7.40691025937275 7.75011623732651 7.37404077827466 7.67413991941376 7.3127391740337 7.53641342717355 7.19098836459682 0.185416146922759 0.180684820376442 0.187983024132714 0.188785804704347 0.192576267253911 0.197210889086273 0.183725490376548 0.186313047207488 0.182572709270175 0.184687445879461 0.181375398465277 0.174449630199791 0.179757426536697 0.187628934923106 0.201243000845142 0.183322728467712 0.199669576908501 0.179705873494328 0.182650708770167 1 1 - 26352564 26353215 26352870.091 26352384 26354360 - gene protein_coding_gene FALSE TRUE AT1G69960.1 PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A); protein phosphatase type 2A type 2A serine/threonine protein phosphatase (PP2A) mRNA, Identical to Serine/threonine-protein phosphatase PP2A-5 catalytic subunit (EC 3.1.3.16) (PP2A5) [Arabidopsis Thaliana] (GB:O04951;GB:Q42544); similar to PP2A-2 (protein phosphatase 2a-2), protein phosphatase type 2A [Arabidopsis thaliana] (TAIR:AT1G10430.1); similar to PP2A-1 (protein phosphatase 2A-2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G59830.1); similar to protein phosphatase 2A catalytic subunit [Lycopersicon esculentum] (GB:AAQ67226.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.232818431193691 2.12844667786173 0.0643351079263975 1 2.64400477934439 15.7383409352543 0.232818431193691 0.124541330166500
AT2G18040_at 10.3795868161732 10.564588615984 10.8243349221004 10.7052223021643 10.9198691701026 10.5267058230555 10.7370017187419 10.5351655526202 10.0717065753168 10.0199749263062 10.1198627457033 10.1642697619130 10.1459208247115 10.1354647970337 10.1489751655602 10.1957326907819 10.2110263364611 10.2503099148412 9.8465214501154 0.0745519867875006 0.0720879206775319 0.0729610603452923 0.0770015155645558 0.0718550239939682 0.075310465468352 0.0724707767476172 0.0714349089406693 0.0805100758714105 0.0737691195494652 0.0731835989909566 0.0722951070678362 0.0711236915803481 0.0762856021072102 0.0726455673269265 0.0730544176557151 0.0796502267351212 0.0744171724764788 0.0725008941394031 2 2|0 +|/ 7849438 7850530 7849643.3 7849246 7850952 + gene protein_coding_gene FALSE TRUE AT2G18040.1 PIN1AT (parvulin 1At) phosphorylation-specific peptidyl prolyl cis/trans isomerase (PPIase) with specificity for phosphoserine-proline bonds Identical to Peptidyl-prolyl cis-trans isomerase 1 (EC 5.2.1.8) (Rotamase Pin1) (PPIase Pin1) (PIN1At) (PIN1) [Arabidopsis Thaliana] (GB:Q9SL42;GB:Q42334); similar to peptidyl-prolyl cis-trans isomerase PPIC-type family protein [Arabidopsis thaliana] (TAIR:AT1G26550.1); similar to Peptidyl-prolyl cis-trans isomerase 1 (Rotamase Pin1) (PPIase Pin1) (MdPin1) (GB:Q94G00); contains InterPro domain PpiC-type peptidyl-prolyl cis-trans isomerase; (InterPro:IPR000297) 0.190995837094390 2.12817800006957 0.0643625190277628 1 2.64362748380741 20.7244824968870 0.190995837094390 0.0854351679476102
AT3G07300_at 7.38211725996213 7.43454665291274 7.34205660313715 7.28125069667531 7.29932877744882 7.27133208802545 7.70133360286237 7.32729508589077 5.59018303463311 6.26629903622524 5.82687714718336 6.70685440552984 6.64744262869856 6.34667590463784 6.73130332646023 6.52384202486698 6.64221014200204 5.93074231411202 5.87025099895208 0.218061081378609 0.217192211511514 0.223453518644795 0.217370486668791 0.217192211511514 0.224415898741714 0.217192211511514 0.22560718959237 0.230652905688201 0.219326450649156 0.221209949866604 0.227805783005511 0.232072905300888 0.230749172443520 0.233848354916078 0.230848038620663 0.220281158326468 0.220809535423452 0.226633914407655 3 3|0 -|/ 2325170 2325946 2325469.667 2324623 2327630 - gene protein_coding_gene FALSE TRUE AT3G07300.1|AT3G07300.2 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein|GTP binding / translation initiation factor similar to eukaryotic translation initiation factor 2B family protein / eIF-2B family protein [Arabidopsis thaliana] (TAIR:AT2G44070.1); similar to putative translation initiation factor 2B beta subunit [Nicotiana tabacum] (GB:AAD52847.2); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) 0.173875677165447 2.1279270073821 0.0643881361523943 1 2.64327503298633 13.5441098508426 0.173875677165447 0.0663805808718236
AT2G18700_at 11.2721619642864 11.5372718267348 11.2686372715720 11.2638483264268 11.6054976588886 11.4410577333502 11.067860297568 11.1602278458198 11.8390229496467 11.5798572643013 11.4783642210264 11.1140616837315 11.2835045424036 11.2743927995357 11.0536245654272 11.5199930536085 11.1059804447421 11.4322191915465 11.8307017030304 0.0680397946916065 0.0681094396608614 0.0690513761725957 0.0716930371338780 0.0684185942647431 0.0750877992692926 0.0692606503398184 0.0718559409931374 0.0758254440094809 0.0701211173856834 0.0667716331109747 0.0667716331109747 0.0715109946062534 0.0692481586572012 0.0729427061647464 0.0667716331109747 0.0777371514983943 0.0706913126979075 0.0699647159321216 2 2 + 8118207 8118832 8118611 8116125 8119092 + gene protein_coding_gene FALSE TRUE AT2G18700.1 ATTPS11 (Arabidopsis thaliana trehalose phosphatase/synthase 11); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS5 (Arabidopsis thaliana trehalose phosphatase/synthase 5), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT4G17770.1); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to Glycosyl transferase, family 20; Trehalose-phosphatase [Medicago truncatula] (GB:ABE86430.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) -0.165856656141469 -2.12561113736645 0.0646249712252617 1 2.64002348589072 22.8433844664536 -0.165856656141469 0.0563101969980381
AT1G80380_at 9.85199592583141 10.0178762960817 9.8830588603539 9.74356820725268 10.1999860587315 9.42927471471184 10.9234978388277 10.6889316043937 10.8778974135104 10.8590436671059 11.1365620900947 11.1657458963889 10.5334729245928 10.8971169437475 11.0364673691470 11.2083369600630 10.2631146869108 10.7699127693233 10.7577083353444 0.114311737594915 0.113853133526390 0.121920278515038 0.123613566685754 0.117454628679472 0.13057845878998 0.116391373389971 0.118117086060105 0.125794378026942 0.113853133526390 0.114613119953142 0.113853133526390 0.117931502462686 0.117796788099457 0.118673617724351 0.113853133526390 0.125878811792755 0.118380423516154 0.114754955851450 1 1|0 +|/ 30223037 30224619 30224181.778 30222111 30224896 + gene protein_coding_gene FALSE TRUE AT1G80380.1|AT1G80380.2|AT1G80380.3 phosphoribulokinase/uridine kinase-related encodes a glycerate kinase which catalyzes the last step of photorespiration C2 cycle. Identical to D-glycerate 3-kinase, chloroplast precursor (EC 2.7.1.31) (AtGLYK) (GLYK) [Arabidopsis Thaliana] (GB:Q944I4;GB:Q8LFL2;GB:Q9C5L9;GB:Q9C967); similar to Predicted kinase (ISS) [Ostreococcus tauri] (GB:CAL53463.1); similar to Os01g0682500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043886.1); contains domain C-type lectin-like (SSF56436)|Identical to D-glycerate 3-kinase, chloroplast precursor (EC 2.7.1.31) (AtGLYK) (GLYK) [Arabidopsis Thaliana] (GB:Q944I4;GB:Q8LFL2;GB:Q9C5L9;GB:Q9C967); similar to Predicted kinase (ISS) [Ostreococcus tauri] (GB:CAL53463.1); similar to Os01g0682500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043886.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897) -0.255906028153922 -2.12484496939567 0.0647035112116149 1 2.63894794803678 20.9462191934499 -0.255906028153922 0.144372737962548
AT1G12800_at 10.2884008798725 10.2418312913597 10.1043864038518 9.87552700107808 10.6296711689629 9.89131433708052 11.0987062598156 10.8041353460347 11.077861934853 11.0348173706776 11.0829065842284 11.2697152890857 10.8173147336403 10.9971536386401 11.2358337194761 11.0624453147306 10.5068438506477 11.0298174906793 10.9666114590550 0.0790835433749756 0.076301251990356 0.0837543827628702 0.0782842625072966 0.0774618480123249 0.0821180090612981 0.0762813155726206 0.0768631897833509 0.0815588668662409 0.0762813155726206 0.0762813155726206 0.0762813155726206 0.0762813155726206 0.0783609567952661 0.0775924527275916 0.0764774502560392 0.0827523779911047 0.0794317632208112 0.0777902348714447 1 1|0 -|/ 4361958 4362930 4362528.429 4361549 4365329 - gene protein_coding_gene FALSE TRUE AT1G12800.1 S1 RNA-binding domain-containing protein similar to S1 RNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G23700.1); similar to putative ribosomal S1 protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07358.1); similar to Os02g0115600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045672.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029) -0.254610071874068 -2.12403133621566 0.0647870188132547 1 2.63780587936165 21.3800886272584 -0.254610071874068 0.143383719523083
AT2G34520_at 7.55295047861008 7.51997453530373 7.09582898455425 7.22304977554423 7.4449176928159 7.4505955358075 6.66641117840576 7.04525826916979 6.37652480698969 6.00698152716816 6.4577421439635 6.67542908672901 6.30337354773509 6.24300426274261 6.84697855194476 6.12450693770865 6.75314351436322 6.5194040970162 6.35499457638537 0.212550779764281 0.212977544168782 0.214672716019341 0.218630234169064 0.209544264217678 0.209544264217678 0.216275292686184 0.21993562605538 0.217934402710869 0.214593516355877 0.216227636721525 0.216784636028208 0.210738853324435 0.219375872874683 0.214823047929009 0.215301781710119 0.221340940350682 0.212204213503157 0.218018882470201 2 2 - 14555335 14555683 14555503 14554863 14555837 - gene protein_coding_gene FALSE TRUE AT2G34520.1 RPS14 (ribosomal protein S14); structural constituent of ribosome nuclear-encoded mitochondrial ribosomal protein S14 similar to ribosomal protein S14 [Brassica napus] (GB:YP_717170.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) 0.175865089701219 2.12146678572456 0.0650509210718538 1 2.63420678705975 13.6181806752546 0.175865089701219 0.0694011556109577
AT1G50450_at 8.1581667292884 7.68775957047533 7.73024771099581 7.23823104437356 8.1785309010904 7.57775224891481 8.80737009650509 8.26780835772438 8.3259786901218 8.48898836563346 8.32719696498912 8.46283987428779 7.81662326271363 8.3654847468713 8.56967057394181 8.70019502883435 8.3766631091571 7.96892962259305 8.3286667903333 0.146353848849179 0.149416074670618 0.155621112509765 0.147209545482765 0.141953696456700 0.152361456329647 0.147077240511270 0.144721406673113 0.149736895143895 0.151533640429003 0.138337747783463 0.141041802312460 0.147274199979946 0.150826407450402 0.1447507491089 0.141552622532561 0.158102964458827 0.138287601391663 0.136923742686548 1 1|0 -|/ 18691750 18692469 18692174.75 18691453 18694039 - gene protein_coding_gene FALSE TRUE AT1G50450.1 similar to saccharopine dehydrogenase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91413.2); similar to Os12g0137200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066107.1); contains InterPro domain Saccharopine dehydrogenase; (InterPro:IPR005097) -0.303423298130327 -2.11988963684553 0.065213736153725 1 2.63199392844841 16.3080641723975 -0.303423298130327 0.18276941638241
AT1G03250_at 6.88574779488589 7.10061626869052 7.2314979067831 7.35627997017755 7.69271693152016 7.16843269118534 7.68235398799787 7.73717069819033 6.33619591557262 6.54625729585807 6.66640875840875 6.72767965949704 6.98879020829514 7.21410562371238 6.32672941820403 7.27963606750490 6.5644372431457 6.78273525956332 6.37198052000042 0.183381762434685 0.187545099578496 0.189376720421029 0.181780080497296 0.186421006306769 0.18875014172929 0.188748639067895 0.183902636660162 0.200714538945205 0.191062753449853 0.185855046212238 0.190233684416202 0.185695479250061 0.188696006215886 0.187859731527014 0.181780080497296 0.190658508792636 0.185964769309728 0.19060245081271 1 1|0 -|/ 793597 794580 794060.778 793353 795368 - gene protein_coding_gene FALSE TRUE AT1G03250.1 similar to At1g03250/F15K9_13 [Medicago truncatula] (GB:ABE77455.1); contains domain R3H domain (SSF82708) 0.205715195061547 2.11931566069100 0.0652730884620283 1 2.63118869411107 13.9753319596464 0.205715195061547 0.100850619197647
AT1G74020_at 6.73304659314188 7.14258369165897 6.84017354345864 6.80054039115155 5.38609924088519 5.41046691406165 5.36943879344422 5.67904098110929 4.51010998488741 4.58781506874809 3.8614631730844 4.11697452315647 4.25700346644603 3.91684458419381 4.11404921494318 4.22046756316474 4.33716659955235 4.55309692314776 4.2157764721223 0.24237154328664 0.238084203729772 0.232475741094456 0.238002245096107 0.221094776588771 0.222924714338515 0.221094776588771 0.223155671357907 0.225654664868808 0.221094776588771 0.229814413866610 0.228554072439877 0.231965797130324 0.228442684103663 0.226916692422151 0.22300877527691 0.231898429096484 0.22301504170322 0.221094776588771 1 1 - 27838954 27839404 27839182.364 27838792 27840978 - gene protein_coding_gene FALSE TRUE AT1G74020.1 SS2 (STRICTOSIDINE SYNTHASE 2); strictosidine synthase Encodes AtSS-2 strictosidine synthase. Identical to Strictosidine synthase 1 precursor (EC 4.3.3.2) (SS-1) (SS1) [Arabidopsis Thaliana] (GB:P94111;GB:Q9C9C3); similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT1G74010.1); similar to strictosidine synthase (GB:AAB40593.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) -0.193737372537085 -2.11784970385067 0.0654249156363232 1 2.62913233174546 10.4751906508874 -0.193737372537085 0.0892094223693296
AT1G63290_at 7.65116578452419 7.41701170650975 7.21914401272876 7.15380682350976 7.47528890396693 7.36939438021537 6.88601028077419 7.03815853467103 6.81519664734095 7.08165859460208 7.16038219733958 7.5026301631212 7.15756916461385 7.38736821175901 7.15790440633072 7.33312178935163 6.80816158992912 7.20547574676943 6.93749606434334 0.163551521890736 0.157535478670873 0.160169893128565 0.157535478670873 0.164285949252821 0.159523117145239 0.160521231115570 0.158139324088268 0.169868198996822 0.169288381501330 0.166642683958756 0.160347024912923 0.157535478670873 0.165817868704726 0.171127050571494 0.167913515929043 0.164695413965015 0.166526980265439 0.162400068967298 1 1|0 -|/ 23475786 23476716 23476079.111 23475514 23477304 - gene protein_coding_gene FALSE TRUE AT1G63290.1 ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative similar to ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative [Arabidopsis thaliana] (TAIR:AT3G01850.2); similar to Ribulose-phosphate 3-epimerase, cytoplasmic isoform (Ribulose-5-phosphate-epimerase) (Cyt-RPEase) (RPEcyt) (Pentose-5-phosphate 3-epimerase) (PPE) (GB:Q9SE42); contains InterPro domain Ribulose-phosphate 3-epimerase; (InterPro:IPR000056); contains InterPro domain Ribulose-phosphate binding barrel; (InterPro:IPR011060) 0.162807421687554 2.11756073663184 0.0654548841772251 1 2.62872702487548 14.3556777670695 0.162807421687554 0.0529048859468765
AT2G20860_at 9.8285140252978 9.9131107075705 9.7053967342886 9.77593977505107 9.78356553705927 9.65111489345691 9.93000375138629 10.2262735171741 10.2799124157226 10.3225602155934 10.3066339477137 10.2542839988379 10.0786867023875 10.1760918752338 10.3102209083069 10.4604767682402 9.95426130298993 10.1588534331273 10.3023069530517 0.0766313926742429 0.0766313926742429 0.085531293478466 0.0780045366446131 0.0766313926742429 0.0807881433006553 0.0799127885570504 0.0783358212901717 0.0818342519179305 0.0772838961867407 0.0787483737215495 0.077019140622908 0.0775274014935746 0.0855415441587605 0.0806192206255756 0.0766313926742429 0.0788759537369054 0.0793391317271777 0.0767133407976824 2 2 + 8987484 8987977 8987716.364 8986660 8988307 + gene protein_coding_gene FALSE TRUE AT2G20860.1 LIP1 (Lipoic acid synthase 1); lipoic acid synthase LIP1,Lipoic acid synthase, similar to lipoic acid synthase family protein [Arabidopsis thaliana] (TAIR:AT5G08415.1); similar to putative lipoic acid synthase [Pisum sativum] (GB:ABA29156.1); similar to putative lipoic acid synthase [Pisum sativum] (GB:ABA29155.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Lipoate synthase; (InterPro:IPR003698); contains InterPro domain Elongator protein 3/MiaB/NifB; (InterPro:IPR006638) -0.167312921538881 -2.11578552643227 0.0656392835168127 1 2.62623739746570 20.1087557736075 -0.167312921538881 0.0593079986693223
AT3G13445_at 6.05862457568284 6.9158807172486 7.05919510768793 7.09099928400038 7.07976951572863 6.93486496959352 6.80879333211188 6.83344790499217 5.65935895953675 5.65137502071714 5.88718056412733 5.80315440515325 6.4770188576828 5.53422387474944 5.918327742969 6.01117377624557 6.30427674465762 5.56211874051986 6.08820917004214 0.247681710070509 0.241966650643626 0.246016374450309 0.239428526684422 0.237586058505684 0.237586058505684 0.237586058505684 0.242202267183622 0.246040466796088 0.248079180236801 0.244228116163876 0.237586058505684 0.242197939994287 0.266182488656683 0.251145597597477 0.239233167197070 0.2433889339507 0.248216743006323 0.240056357017508 3 3|0 +|/ 4380357 4381733 4381175.857 4379803 4382231 + gene protein_coding_gene FALSE TRUE AT3G13445.1|AT3G13445.2 TBP1 (TRANSCRIPTION FACTOR IID-1); DNA binding / RNA polymerase II transcription factor TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex Identical to TATA-box-binding protein 1 (TATA-box factor 1) (TATA-binding factor 1) (TATA sequence-binding protein 1) (TBP-1) (Transcription initiation factor TFIID TBP-1 subunit) (TBP1) [Arabidopsis Thaliana] (GB:P28147); similar to TBP2 (TATA binding protein 2), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT1G55520.2); similar to TATA-box-binding protein 2 (TATA-box factor 2) (TATA-binding factor 2) (TATA sequence-binding protein 2) (TBP-2) (Transcription initiation factor TFIID TBP-2 subunit) (GB:P50159); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain TATA-box binding; (InterPro:IPR000814); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295)|Identical to TATA-box-binding protein 1 (TATA-box factor 1) (TATA-binding factor 1) (TATA sequence-binding protein 1) (TBP-1) (Transcription initiation factor TFIID TBP-1 subunit) (TBP1) [Arabidopsis Thaliana] (GB:P28147); similar to TBP2 (TATA binding protein 2), DNA binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT1G55520.2); similar to TATA-box-binding protein (TATA-box factor) (TATA-binding factor) (TATA sequence-binding protein) (TBP) (Transcription initiation factor TFIID TBP subunit) (GB:P26357); contains InterPro domain Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal; (InterPro:IPR012294); contains InterPro domain TATA-box binding; (InterPro:IPR000814); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.262278604120759 2.11474136873079 0.0657479814268217 1 2.62477326260527 12.7161129533950 0.262278604120759 0.150617694267701
AT1G77350_at 7.85671153556493 8.07913688744002 8.07155394027509 7.96170681526143 8.24714056051477 7.93287397282912 7.89706922522817 7.64843650382764 7.27053854252722 7.11735979325876 7.30596095326832 7.79155674000701 7.36544014812618 7.07942042184688 7.45470157133853 7.36743693986598 7.02988947026845 7.1775217276049 7.00915422378333 0.194616538879567 0.1812972104707 0.1812972104707 0.183474139938376 0.181604930004885 0.191712294155667 0.185339808501447 0.186132054401162 0.188717063126019 0.195518699863690 0.185877800410219 0.1812972104707 0.185336656270744 0.192669311728921 0.193511344871775 0.1812972104707 0.194087423297135 0.188307896974518 0.192043639595025 1 1|0 +|/ 29075417 29076397 29075823 29075183 29076793 + gene protein_coding_gene FALSE TRUE AT1G77350.1|AT1G77350.2 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01331.1); similar to Os05g0486200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055878.1) 0.186060213777965 2.11401970521351 0.0658232098529039 1 2.62376143616575 15.1887496049829 0.186060213777965 0.0815601960505869
AT2G41650_at 4.99606354267769 4.79326411123751 5.10610114378307 5.05922688290243 4.97695034852248 4.94118265078367 5.20572072200745 5.23384134162103 4.92220316884613 4.80398887377442 5.61521270782996 5.45351631427059 5.21534622358787 4.94214797937497 5.7403114546995 5.16679714875425 5.11162490446249 5.0349124582032 5.10369089397875 0.176083284031106 0.172206041787902 0.1782394557792 0.175886038954056 0.172696380072348 0.183674817994847 0.173929782991087 0.173591293520175 0.176222821674942 0.184967878218891 0.177000567447869 0.176502727421637 0.172914036199392 0.172615741576389 0.186576905501676 0.173178772043444 0.184095522018336 0.176767600798084 0.174069682974626 2 0|2 /|+ 17371146 17371273 17371213.889 17370985 17371512 + gene protein_coding_gene FALSE TRUE AT2G41650.1 unknown protein 0.152666081905039 2.11188469267570 0.0660462615895716 1 2.62076847722888 10.1531828234907 0.152666081905039 0.0368711645783391
AT3G61790_at 6.92774288770996 7.81569803999004 7.2094686507049 7.25075489809739 8.28786651435825 7.48363874569883 7.10333844027956 7.1293262942623 6.79298618833162 6.35952223295391 7.33690276205972 7.07924944181002 6.89712139500892 7.35515891706997 6.25393225667785 7.1562610047982 5.85079511966206 6.74305240282589 6.28586555520793 0.231198090506475 0.234144416169479 0.238765278380156 0.235439138272488 0.240745684185827 0.253725034188760 0.242180234691479 0.243055138811908 0.244614281169136 0.233115667201237 0.226221436751984 0.228265221278291 0.226221436751984 0.235297723496113 0.236465388906790 0.226221436751984 0.270367492676845 0.242345939866716 0.242678975841738 3 3|0 -|/ 22882952 22883830 22883511.5 22882766 22884761 - gene protein_coding_gene FALSE TRUE AT3G61790.1 seven in absentia (SINA) family protein Identical to E3 ubiquitin-protein ligase SINAT3 (EC 6.3.2.-) (Seven in absentia homolog 3) (SINAT3) [Arabidopsis Thaliana] (GB:Q84JL3;GB:Q8LFQ3;GB:Q9M359); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT4G27880.1); similar to Zinc finger, RING-type; Seven in absentia protein [Medicago truncatula] (GB:ABE82758.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.334253478489484 2.11054766657696 0.0661863198752934 1 2.61889454584439 14.0577378862144 0.334253478489484 0.207494387850206
AT4G16210_at 8.1468172898742 8.04463280344061 8.09105519997988 8.03993354294039 8.62777363415255 8.26735448194244 7.79795259351704 7.33986591584078 6.35258283710832 6.10975771740329 5.98178593951025 5.38805686557671 6.47756199939669 5.63349315454984 6.07294967223558 6.0857858153174 6.49742289222088 6.94442828263694 5.97498300233897 0.237835166104414 0.237472039842117 0.236822963497002 0.234136329969846 0.238730148170849 0.237734284610475 0.234136329969846 0.235932538170827 0.244718693892866 0.234444892163496 0.24090377017493 0.239564984507963 0.234136329969846 0.238827274495412 0.236214107246211 0.240052142247007 0.244164438655635 0.234982989686158 0.237759613691105 4 4 - 9177074 9177826 9177592.909 9176688 9178063 - gene protein_coding_gene FALSE TRUE AT4G16210.1 enoyl-CoA hydratase/isomerase family protein similar to naphthoate synthase, putative / dihydroxynaphthoic acid synthetase, putative / DHNA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G60550.1); similar to putative enoyl CoA hydratase [Cicer arietinum] (GB:CAB61740.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.206811561408003 2.10966570433774 0.0662788669167546 1 2.61765857481437 14.1849032310264 0.206811561408003 0.102789293483413
AT3G07010_at 7.55979819146347 7.61332055922575 3.19337068920975 3.26095226515289 4.73182946788075 4.39549846474094 3.57735495445108 3.89780932284068 6.71716057998254 5.12941950577251 9.24012873630837 9.38165303631398 8.74548880187101 8.2329059295611 9.3847559045792 8.0377674842143 4.78784628048096 7.16443498060203 8.33319765756945 0.235948799169659 0.234323321715264 0.236486912817043 0.239679682534184 0.244089740385762 0.248107065623182 0.241753997336533 0.248535597875884 0.248002980937014 0.263430274197817 0.233467420234664 0.232493760340054 0.235316614409335 0.240764118166908 0.231067258082656 0.231265243319757 0.256395943391915 0.235876650466477 0.239009201656883 3 3 - 2213003 2213822 2213334 2212734 2216489 - gene protein_coding_gene FALSE TRUE AT3G07010.1 pectate lyase family protein Identical to Probable pectate lyase 8 precursor (EC 4.2.2.2) [Arabidopsis Thaliana] (GB:Q9M8Z8;GB:Q8LF66); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT3G24670.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT4G13210.1); similar to pectate lyase family protein [Arabidopsis thaliana] (TAIR:AT5G48900.1); similar to pectate lyase [Fragaria x ananassa] (GB:AAK66161.1); similar to ripening-related pectate lyase [Man (GB:AAX88800.1); similar to pectate lyase 2 [Musa acuminata] (GB:AAF19196.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Pectate lyase/Amb allergen; (InterPro:IPR002022); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) -0.185688986057980 -2.10762922393949 0.0664930429204188 1 2.61480515755344 12.2029743520454 -0.185688986057980 0.0817656200074014
AT3G15760_at 6.62492212526336 6.6152789843485 7.51110277176374 7.39482433588502 6.27154670723545 6.61815640149983 5.2173914919206 6.09931912168878 5.85385057408484 4.60611066342955 4.19815319898263 3.64950872343572 5.24792080555444 5.73942013505315 3.40585805858701 5.74543602239451 5.94450335687824 5.42868784540432 5.05269878846921 0.192280818178588 0.198746895430764 0.190400619502864 0.193777610501366 0.194878326855943 0.201849313893092 0.195176372252623 0.192587203454011 0.200000030052718 0.191641961047353 0.196549866210485 0.225926502463667 0.194988087873647 0.190400619502864 0.194518732047912 0.190400619502864 0.200548421272947 0.194099023838831 0.204854286465772 3 3|0 +|/ 5337743 5338192 5337962.8 5337554 5338474 + gene protein_coding_gene FALSE TRUE AT3G15760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52565.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28733.1) 0.279364483124544 2.10705004656944 0.0665540778259331 1 2.61399376542041 11.5894790892577 0.279364483124544 0.165224006125982
AT2G37050_at 5.91492410282826 6.64024224642966 5.5691571675895 5.1175463580782 5.46676383836267 6.05748588477977 6.80500366414653 6.75749989240051 6.46642198989025 6.5765516992996 6.52069861067914 7.14134794697446 7.09128595530199 7.10132145435293 7.13806596647944 7.28867362293013 6.9897626786707 6.29169244253813 6.648737183375 0.1981560686845 0.193201939538077 0.198848282826500 0.202821291563317 0.192379054136852 0.200811908239414 0.195069145267124 0.195981731769204 0.203859935781152 0.192889112986777 0.198633406017241 0.194072561489325 0.202339674043777 0.190565100718780 0.197030034627987 0.192424522014733 0.20391459575072 0.203701574533303 0.205483703480178 2 2 + 15579814 15580531 15580242.364 15576065 15580805 + gene protein_coding_gene FALSE TRUE AT2G37050.1|AT2G37050.2|AT2G37050.3 kinase| similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67720.1); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95578.2); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91110.1); similar to Os11g0102900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065520.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67720.1); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95578.2); similar to leucine-rich repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91110.1); similar to Os11g0102900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065520.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.297613351848062 -2.10448490237019 0.0668250544748725 1 2.61040081265844 12.7957077487915 -0.297613351848062 0.179947551584183
AT1G15880_at 9.33036651230439 9.46216598316496 9.58956237385386 9.4879245655082 10.1200993878956 9.83717829724013 9.31447040780773 9.08586519353963 9.37289793946952 8.86054548545991 9.11327557382684 8.79429424779987 8.91383440854692 9.13422194551393 8.85907134508949 9.20015941068725 8.94830241849398 9.04279774504128 9.10460476959865 0.120941922288536 0.11744795445085 0.123514408857331 0.121925273229209 0.119129671116875 0.124035434331118 0.124078549616628 0.122393373231625 0.129362988022436 0.12131091403786 0.122413099396782 0.128005084465786 0.123722279310516 0.121271860332485 0.123093587235018 0.120280515720066 0.124906596838606 0.125831554703616 0.124232656133277 1 1|0 -|/ 5458745 5459656 5459156.222 5458529 5460327 - gene protein_coding_gene FALSE TRUE AT1G15880.1 GOS11 (GOLGI SNARE 11); SNARE binding Golgi SNARE 11 protein (GOS11) Identical to Golgi SNARE 11 protein (AtGOS11) (Golgi SNAP receptor complex member 1-1) (GOS11) [Arabidopsis Thaliana] (GB:Q9LMP7); similar to GOS12 (GOLGI SNARE 12), SNARE binding [Arabidopsis thaliana] (TAIR:AT2G45200.1); similar to Os08g0440000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061900.1); similar to hypothetical protein [Cicer arietinum] (GB:CAB71130.1); similar to Os09g0416700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063180.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.174268018642924 2.10400078516581 0.0668763159890947 1 2.60972283883580 18.5851677743565 0.174268018642924 0.0692231703728795
AT2G04940_at 5.66189506349654 5.88033333940712 5.70907787349602 5.75915310977107 6.06102357494701 6.15348040892983 5.41372277434312 5.22112505832726 5.14389464312168 4.86141454491364 5.29419514459832 4.88841376999302 5.25648538448949 5.13900544510813 4.98557351564647 4.98531535577561 4.93852129391764 5.04107983180274 5.34892546818425 0.183845834670029 0.18537946021111 0.184767709134055 0.192734068578467 0.187897209839668 0.195729083506086 0.192100630293410 0.186891898759776 0.190848972087355 0.193669646472544 0.183845834670029 0.191439852878039 0.187475306085643 0.190138045482724 0.189713715291709 0.183992514185998 0.194615336004585 0.194282822668897 0.192474058614426 2 0|2 /|- 1736674 1738014 1737184.857 1736482 1740385 - gene protein_coding_gene FALSE TRUE AT2G04940.1 scramblase-related similar to scramblase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29081.1); similar to Os04g0599400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053750.1); similar to Os02g0238500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046399.1); contains InterPro domain Scramblase; (InterPro:IPR005552) 0.162205090909524 2.10363169636496 0.0669154232538905 1 2.60920598043066 10.8245523685429 0.162205090909524 0.0535813000458462
AT2G38410_at 5.87265397255012 6.32032259028038 6.02028594038771 6.63104244773778 7.27818590890288 6.90848227469151 5.7449619565025 5.47983247193813 5.95252210789029 5.39025241025906 5.0025416142026 4.84047378308477 5.2143297230396 5.50902026428101 4.54285756130528 5.70019090581861 5.65497635581486 5.58502795157629 5.41039965054519 0.204803158335363 0.201035329988009 0.213471805354465 0.211094109726054 0.212693495189028 0.212841959816607 0.206241127117713 0.208463874989205 0.216332529080458 0.206399239218645 0.208362455514502 0.209222168724767 0.207358005811334 0.20837945552047 0.206538762077447 0.200996398098742 0.221990642707333 0.202999869662258 0.205274678835029 2 2 - 16094130 16094557 16094321.818 16093708 16097286 - gene protein_coding_gene FALSE TRUE AT2G38410.1 VHS domain-containing protein / GAT domain-containing protein similar to VHS domain-containing protein / GAT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G01760.1); similar to Epsin, N-terminal; GAT; ENTH/VHS [Medicago truncatula] (GB:ABE88894.1); contains InterPro domain GAT; (InterPro:IPR004152); contains InterPro domain VHS; (InterPro:IPR002014); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.263421137718860 2.10175718691296 0.0671143831013892 1 2.60658133175861 11.7022552751015 0.263421137718860 0.152877426714969
AT3G52190_at 6.36732207342393 6.19359160326422 5.81420053748108 6.06393576333505 5.45110173364378 5.46651909327151 5.67210102131423 5.92103026624063 4.65905115924898 4.80411185518518 4.64912687838299 5.01651240125629 4.84275840886564 4.78738892946602 4.6503102958616 4.65958491326135 4.8412125776235 4.1228809744784 4.64524136184653 0.23671818364909 0.236091151268026 0.230442870650362 0.230442870650362 0.230442870650362 0.242136820845232 0.230442870650362 0.233678593415779 0.233646066498944 0.230442870650362 0.231562114092072 0.231596185132436 0.234798223525085 0.234882413687086 0.230442870650362 0.232647836655332 0.230442870650362 0.243509966746349 0.234904318626657 3 3|0 -|/ 19365116 19366002 19365464.4 19364950 19368052 - gene protein_coding_gene FALSE TRUE AT3G52190.1 PHF1 (PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR1); nucleotide binding Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. Identical to Sec12-like protein 1 (Protein PHOSPHATE TRANSPORTER TRAFFIC FACILITATOR 1) (PHF-1) (PHF1) [Arabidopsis Thaliana] (GB:Q8GYE0;GB:Q9SUY6); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50650.1); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50550.1); similar to STL2P (SEC12P-LIKE PROTEIN), nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G01470.1); similar to Os07g0187700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059077.1); similar to putative membrane protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37546.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.173075747744325 -2.10110947810733 0.0671832644610691 1 2.60567455805007 10.5682369520767 -0.173075747744325 0.0680774751545996
AT1G04080_at 8.76983019370268 8.4960800622505 8.54366233390262 8.21564946402208 8.90273840541707 8.2586207895488 8.7135231592572 8.52157316458552 8.55834840192214 8.46799713009263 8.0898921855852 8.10990857367931 8.28950278240743 8.17642434792599 8.23230203260042 8.3526202445925 8.26836800941557 8.2108331544116 8.65809606524476 0.147154037814321 0.144190514891963 0.145196623501604 0.151787367840417 0.159133898739670 0.149788907586606 0.149372182191546 0.145711583619091 0.159996648834194 0.156589191748258 0.147365548591241 0.147815891432929 0.159799764001299 0.147431435054521 0.147106267859632 0.147564354598889 0.157579405500143 0.163692667969464 0.156216904491487 1 1|0 +|/ 1055852 1056512 1056122.3 1051342 1056750 + gene protein_coding_gene FALSE TRUE AT1G04080.1 hydroxyproline-rich glycoprotein family protein similar to binding [Arabidopsis thaliana] (TAIR:AT5G46400.1); similar to Protein prenyltransferase [Medicago truncatula] (GB:ABE92037.1); similar to Os03g0210400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049340.1); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.245166506409463 -2.10041295741538 0.0672574135476376 1 2.60469952639587 16.9415656709594 -0.245166506409463 0.137821920778167
AT3G15470_at 5.51083162921631 5.67714612331285 5.26093188945639 5.33815548188758 5.59964842864577 5.58173159314661 6.08355636182457 5.87480703926551 6.40544875757375 5.72628880550200 6.29843653383589 6.26772475299778 5.59573971413974 5.87955534720314 6.66397043572603 5.71398981615969 5.74573811432862 6.13017508977256 5.90467055657113 0.160926807226416 0.163358117956157 0.167655320255504 0.158887054704604 0.166370965526356 0.166004727404982 0.163537581637247 0.167687402794529 0.162742945483352 0.164050910997862 0.165286410820769 0.166729501859226 0.171015566767463 0.166813744941543 0.163643630067155 0.167584688791311 0.178079948369821 0.162467368154344 0.165187585645605 3 3 - 5216640 5217202 5216950.091 5216269 5220225 - gene protein_coding_gene FALSE TRUE AT3G15470.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54200.1); similar to OSJNBa0074L08.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE02139.2); similar to Os04g0678300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054272.1); similar to H0801D08.5 [Oryza sativa (indica cultivar-group)] (GB:CAJ86247.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.158344127241290 -2.10028837673829 0.067270684351341 1 2.60452513930790 11.6403772010458 -0.158344127241290 0.0481829953210615
AT2G39630_at 5.62179410388284 6.28356732538073 5.81042037213285 6.36773306131545 6.53196828688701 6.22189478009104 5.80840129667203 6.03125231503036 5.02728919683119 5.57262025636305 5.96934693968312 6.06495956167312 5.91937931816826 5.45259310690816 5.20574657143597 6.04661547652681 5.74732118198595 5.37528702191252 5.79965350617864 0.287432463010727 0.300872078897412 0.295206055847247 0.300293014489511 0.28915831963435 0.286585552965073 0.27282886029754 0.278083919931048 0.284142357092757 0.287586106633636 0.286454455758484 0.277427093700051 0.284140671955137 0.278608139508132 0.284670260547962 0.276181718514377 0.285959993253403 0.277605684256742 0.282485264749007 2 2 - 16529123 16529743 16529460.273 16528822 16531765 - gene protein_coding_gene FALSE TRUE AT2G39630.1|AT2G39630.2 glycosyl transferase family 2 protein similar to dolichyl-phosphate beta-D-mannosyltransferase, putative / dolichol-phosphate mannosyltransferase, putative / mannose-P-dolichol synthase, putative [Arabidopsis thaliana] (TAIR:AT1G20575.1); similar to Os03g0821800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051729.1); similar to putative dolichyl-phosphate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAO18453.1); contains InterPro domain Glycosyl transferase, family 2; (InterPro:IPR001173) 0.276442762847107 2.09971457750728 0.0673318405109913 1 2.60372197264601 11.6792175095462 0.276442762847107 0.163657877565588
AT4G34540_at 5.06968057270712 5.11699826986945 5.43492060025734 4.97389728440511 5.30281099589794 5.31107970739116 5.36064127285779 5.36406479645166 4.6654129972884 4.23040910333049 4.40299398267607 4.2560811786874 4.6857406837851 4.93298426513743 4.8660930918938 4.63149357552775 5.14929867589866 4.64165111437331 4.1737991298996 0.246091895600515 0.235846174446655 0.244499096398932 0.241776639204123 0.240841827393537 0.247133407546286 0.247557732841499 0.237905346912113 0.268119415938147 0.238508188311245 0.239383201437785 0.237502661548290 0.234887366654265 0.254044661653059 0.247776898303135 0.241656100197153 0.240801750332846 0.233848605762591 0.235997794912597 4 4 + 16501187 16501903 16501528.455 16498396 16502179 + gene protein_coding_gene FALSE TRUE AT4G34540.1 isoflavone reductase family protein encodes a protein whose sequence is similar to pinoresinol-lariciresinol reductase from pine. similar to isoflavone reductase, putative [Arabidopsis thaliana] (TAIR:AT1G75280.1); similar to NmrA-like [Medicago truncatula] (GB:ABE85942.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) 0.183541289920497 2.09947790712171 0.0673570808589273 1 2.60339071278964 9.76792792806483 0.183541289920497 0.0802163070944793
AT3G02710_at 6.39805205639551 6.4779152566063 6.86306700255006 6.4379548365377 6.6488876746604 5.86372795917516 6.51426034769973 6.51780389846361 5.53351780192598 5.56421132787347 4.69848115786422 4.60056267222056 5.14921408241616 4.81791996771295 5.15149632945196 5.33219323859612 5.54630698474199 4.80275204109111 5.46366016545281 0.196150647235130 0.206836794143432 0.210975186547712 0.196726328428526 0.198971838788143 0.209256840059172 0.199283476533846 0.195711519394917 0.205320569490331 0.199538416633497 0.203940526868833 0.198860536270873 0.201919277474913 0.201994578912612 0.206706977433245 0.200685687278494 0.213793716718723 0.198125370574461 0.203185823652964 3 3 + 583959 584907 584302.2 583120 585955 + gene protein_coding_gene FALSE TRUE AT3G02710.1 nuclear associated protein-related / NAP-related similar to PREDICTED: similar to CG11964-PA [Apis mellifera] (GB:XP_393169.1); similar to Os02g0831300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048618.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Protein of unknown function DUF1716, eukaryotic; (InterPro:IPR013180); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.265847905357999 -2.09914406934943 0.0673926995354919 1 2.60292346667908 11.7316230828507 -0.265847905357999 0.155131399530095
AT1G08510_at 9.88667712059746 9.86061089611557 9.62449916432418 9.52436528843699 9.99046187761984 9.9413538452888 9.8877189545411 10.1936226689295 10.4918233183159 10.0270932474602 11.1273095450947 10.6146257551637 11.1090611727208 10.8670225901712 10.5602348610727 10.6919526571452 10.4556409133030 10.6249061215926 10.2056276003318 0.0906568289790176 0.0877195199198345 0.0902988486000422 0.0918269953911093 0.0870833960600679 0.0938242041897525 0.089455417792697 0.0902398579208313 0.09701518141738 0.0897291036036935 0.0874373038102814 0.0865815079377497 0.085634331723498 0.0874324391723073 0.0858924181783386 0.085634331723498 0.0879646560784535 0.087298333525278 0.0882230541469148 1 1|0 -|/ 2691550 2692432 2691872.5 2691083 2694380 - gene protein_coding_gene FALSE TRUE AT1G08510.1 FATB (FATTY ACYL-ACP THIOESTERASES B); acyl carrier/ acyl-ACP thioesterase Encodes an acyl-acyl carrier protein thioesterase. Hydrolyzes primarily saturated acyl-ACPs with chain lengths that vary between 8 and 18 carbons. Involved in saturated fatty acid synthesis. Nuclear-encoded, plastid-targeted globular protein that is functional as dimer. similar to ATFATA (ARABIDOPSIS FATA ACYL-ACP THIOESTERASE), acyl carrier/ acyl-ACP thioesterase [Arabidopsis thaliana] (TAIR:AT3G25110.1); similar to palmitoyl-ACP thioesterase [Brassica juncea] (GB:ABI18986.1); similar to palmitoyl-ACP thioesterase [Brassica napus] (GB:ABH11710.1); contains InterPro domain Acyl-ACP thioesterase; (InterPro:IPR002864) 0.163921056934264 2.09879838416893 0.0674296015789336 1 2.60243965817569 20.3625931890162 0.163921056934264 0.0565269019762875
AT3G55500_at 6.03039357377707 6.3977380413105 5.70800576951535 6.25846982924297 5.40615710240004 5.99204211215442 4.4084773299813 4.95215177866111 3.94706802165073 3.63300835296396 4.58732249941779 5.63571071634011 5.12439244461565 3.87983751615541 4.72902050883017 2.99266020341462 4.34467631190786 4.43070076038905 5.22127534271785 0.239741983587369 0.230525042245712 0.233763197230255 0.229769338468605 0.228850436085274 0.235579839080531 0.227785179523416 0.227753340773962 0.234323975927496 0.240619296323131 0.227753340773962 0.231677586832462 0.227753340773962 0.235005784825277 0.231330717713342 0.23224025179945 0.236756878114095 0.23961081828372 0.234041474160506 3 3|0 -|/ 20586097 20586737 20586459.6 20585810 20587161 - gene protein_coding_gene FALSE TRUE AT3G55500.1 ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16) expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A16 precursor (AtEXPA16) (Alpha-expansin-16) (At-EXP16) (AtEx16) (Ath-ExpAlpha-1.7) (EXPA16) [Arabidopsis Thaliana] (GB:Q9M2S9;GB:Q680J2); similar to ATEXPA4 (ARABIDOPSIS THALIANA EXPANSIN A4) [Arabidopsis thaliana] (TAIR:AT2G39700.1); similar to ripening-related expansin [Cucumis melo] (GB:ABI94060.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.296200701709343 2.09782865901456 0.0675332251159408 1 2.60108257176172 10.0105081217527 0.296200701709343 0.179576698311325
AT1G54060_at 6.9515297065875 7.1368258164281 6.94726658573777 7.0614063386881 7.4201316665337 7.53810906284683 7.12934739307836 6.9658124011603 6.7641339234086 6.58636368002104 6.98883964050173 6.52992942681409 6.79921833452849 6.72663676681689 7.16649663082522 7.09249644907455 7.25172099266326 6.80058030227759 7.03438779021688 0.169787403317051 0.165991409620691 0.167985375792532 0.163784933779574 0.170768423416991 0.173154234909069 0.171004074112547 0.172282750008356 0.183891129778665 0.175914226403641 0.169717060223353 0.168431484352637 0.164130617175809 0.168752261366134 0.173111467399074 0.163784933779574 0.168529845634505 0.179108818946133 0.176465912435056 1 1 + 20185192 20185566 20185394.909 20184347 20185992 + gene protein_coding_gene FALSE TRUE AT1G54060.1 transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G14180.1); similar to Os02g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047163.1); similar to OSIGBa0140O07.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67239.1); similar to 6b-interacting protein 1 [Nicotiana tabacum] (GB:BAB83610.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.160188802096796 2.09729791561234 0.06759000522891 1 2.60033988663817 14.0010294292925 0.160188802096796 0.051343569263302
AT4G27680_at 7.1642698218462 7.5723524867286 7.35816291361541 7.62195418562019 7.66352605373913 7.67921943608116 8.1222172794069 8.03919494156327 6.3616553620869 6.8618596738972 5.93136956344422 6.02610545626032 6.98086143722338 6.3575155867806 6.51566509871676 6.78063009818415 7.13405186932505 6.49698756520481 7.05693286641741 0.208288166923992 0.201207387381808 0.206951812467553 0.202362038525203 0.199742759594468 0.204483913177727 0.199920904931647 0.206971695470955 0.205666759689302 0.196526089275384 0.194297459801117 0.202170993795985 0.205155337729222 0.202141088257775 0.208839130679807 0.197836377302175 0.207598418344436 0.195639895565362 0.200737474320108 4 0|4 /|+ 13822517 13823051 13822788.667 13821112 13823348 + gene protein_coding_gene FALSE TRUE AT4G27680.1 MSP1 protein, putative / intramitochondrial sorting protein, putative similar to MSP1 protein, putative / intramitochondrial sorting protein, putative [Arabidopsis thaliana] (TAIR:AT5G53540.1); similar to Os06g0714500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058575.1); similar to AAA+-type ATPase (ISS) [Ostreococcus tauri] (GB:CAL52837.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.188021975765178 -2.09591853346265 0.0677377918735536 1 2.59840989549773 14.2966359574216 -0.188021975765178 0.085352322894643
AT1G01910_at 8.49367630042464 8.54389860638928 8.55329774950799 8.5120135802473 8.69428087395746 8.6103666459169 8.47025495324077 8.28542864411192 7.67828578343287 8.1363822877945 8.23748091234043 8.2974786658846 8.16158699202818 7.9536636286473 8.18038046369051 8.30633123888149 8.02218310559562 8.03470635514016 8.15681889816158 0.135526105192577 0.137976916356699 0.142339498116614 0.13406792257383 0.130657661127989 0.148103348910821 0.137270507759871 0.141316667439074 0.147666339694999 0.132499855197093 0.134863690406984 0.130600329050278 0.137102501011487 0.145350075798381 0.13439187450006 0.131526392272337 0.136429146281887 0.146575582014218 0.130433561731378 1 0|1 /|- 313640 314500 313987.889 313101 315902 - gene protein_coding_gene FALSE TRUE AT1G01910.1|AT1G01910.2|AT1G01910.3|AT1G01910.4 anion-transporting ATPase, putative|ATP binding similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to arsenical pump-driving atpase [Aedes aegypti] (GB:EAT35519.1); similar to Os09g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063707.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348)|similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to PREDICTED: similar to CG1598-PA [Tribolium castaneum] (GB:XP_974589.1); similar to Os09g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063707.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348) 0.151452925089407 2.09500511149248 0.0678358285882676 1 2.59713203711778 16.5902632075940 0.151452925089407 0.0368850193277537
AT4G36730_at 8.48341010226282 8.3656201919256 8.58956921131776 8.6754060981719 9.06376207759536 9.075249912528 8.87059938725821 8.87930472027168 8.68872700462607 8.3816690193072 9.0543390697747 8.81381849564388 8.95559046721532 8.77098576567125 8.63521635390314 8.70462927708926 8.69131609032773 8.34996598771932 8.8961466289979 0.0932745426361605 0.095005641541155 0.0909133066446948 0.091488871991253 0.0893606733219084 0.0991544525026828 0.096061576793867 0.0894664292905584 0.0993668258792613 0.0911862497680845 0.0945912218350583 0.0893624739218658 0.0931487786314806 0.0945026405900236 0.0913919589053198 0.0893606733219084 0.093255473986025 0.0991818361649354 0.0942273612076395 4 4|0 -|/ 17310260 17310926 17310511.625 17309616 17312492 - gene protein_coding_gene FALSE TRUE AT4G36730.1|AT4G36730.2 GBF1 (G-box binding factor 1); transcription factor member of a gene family encoding basic leucine zipper proteins (GBFs) which bind the G-box Identical to G-box-binding factor 1 (AtbZIP41) (GBF1) [Arabidopsis Thaliana] (GB:P42774;GB:Q940I9;GB:Q944J1;GB:Q96263); similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G35530.1); similar to G-box binding factor 1A [Brassica napus] (GB:CAA58774.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.146365847624012 2.09432017534867 0.0679094326540315 1 2.59617391731038 17.4516136656973 0.146365847624012 0.0253453826492361
AT2G24180_at 9.58126968462632 9.77574963803005 9.66610065797494 9.85483205670728 9.40572276383868 8.97055013593283 8.74475891888993 8.9201526588601 9.0919534212732 8.96491385141069 8.28376778422673 8.21785526923607 8.44728599570961 8.51064768077663 7.9390461362211 8.57412939905456 8.52620706362888 8.45205307074978 8.8820729396844 0.128852201156321 0.127163007088938 0.129877026378764 0.129074673796101 0.130631374081595 0.139459524979148 0.127487603226277 0.126465769653310 0.136275322143511 0.132583971068932 0.127299896919803 0.129936653263308 0.133078248282432 0.129224571284013 0.135568895790297 0.124607728902763 0.140513413174924 0.136741065513641 0.122914880290347 2 2 + 10290205 10290645 10290438.364 10288927 10290815 + gene protein_coding_gene FALSE TRUE AT2G24180.1 CYP71B6 (CYTOCHROME P450 71B6); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B6 (EC 1.14.-.-) (CYP71B6) [Arabidopsis Thaliana] (GB:O65787); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.195977004496921 -2.09324508367717 0.0680251199488754 1 2.59467018893936 18.0391524580608 -0.195977004496921 0.093766276257804
AT1G29310_at 6.31232140781034 6.73630195611088 6.74391551032894 6.64534627591703 5.67850226967004 5.31110776126465 4.39890958749174 4.95479949231322 4.09849538209535 4.03487036690592 3.9399736610741 4.94859216066063 3.44595630417566 4.30123990571306 4.77284671015263 3.57698027518383 3.39199732759786 3.70467774276593 3.91550081310036 0.230088649289942 0.230066236310639 0.241709994359160 0.238157455725149 0.234192289446879 0.235205738082338 0.229633892754219 0.241632002406887 0.250416256001277 0.232130146060295 0.23020446159216 0.238548539056914 0.23445723789467 0.231707114998411 0.230831724867341 0.232382960115018 0.238933420661597 0.229633892754219 0.231895981238386 1 1|0 +|/ 10253669 10254482 10254132 10252280 10254676 + gene protein_coding_gene FALSE TRUE AT1G29310.1 protein transport protein sec61, putative similar to protein transport protein sec61, putative [Arabidopsis thaliana] (TAIR:AT1G78720.1); similar to protein translocase [Arabidopsis thaliana] (TAIR:AT2G34250.2); similar to putative integral membrane protein [Phaseolus vulgaris] (GB:AAF18411.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE84066.1); similar to SecY protein; ABC transporter related [Medicago truncatula] (GB:ABE85367.1); contains InterPro domain SecY protein; (InterPro:IPR002208) 0.244064500122602 2.09184365252457 0.0681762113676082 1 2.59271030208297 9.86093646508803 0.244064500122602 0.137735391973314
AT3G23605_at 6.2757676444879 7.11025476418077 6.58584667178488 7.39561862339634 7.70128263257173 6.88514507447055 6.30102466462103 6.90027803900264 5.8302045981181 5.72102388343533 6.30208008802481 5.65171058618734 6.21522069102627 6.21305657771573 5.24579194222153 6.08759016254078 5.98644487415351 5.74621780601647 5.26529460162524 0.241935797677019 0.246689139346346 0.247388855725407 0.250458632735508 0.267786437829877 0.25742550772355 0.237924295882231 0.250464721289418 0.253534026199967 0.243218241719219 0.241356595376779 0.244715004026085 0.249818249012905 0.260474872952141 0.241970865504148 0.240753231628449 0.251271109330922 0.240225667992400 0.246469500526115 3 3 + 8476710 8477115 8476889.909 8476578 8477399 + gene protein_coding_gene FALSE TRUE AT3G23605.1 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G14250.1); similar to Os04g0670800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054216.1); similar to OSJNBa0043A12.36 [Oryza sativa (japonica cultivar-group)] (GB:CAE02831.2); contains InterPro domain UBX; (InterPro:IPR001012) 0.410324184537854 2.09165296721750 0.0681967947767403 1 2.59244365624897 12.6626631570038 0.410324184537854 0.266823382988948
AT3G56080_at 7.6941503886543 7.65784053750451 8.36728288162889 8.0456356878551 8.7389685722234 7.76036113841575 9.42132223862983 9.17618680244704 8.6006999677172 8.60943476001277 7.96976710744666 8.16232374400496 8.7349578314056 8.33505209510138 7.94034880839811 8.39347133435803 8.51273724742506 8.1731683080512 8.64565729612823 0.168711895746774 0.164495428399757 0.160555249237837 0.171315640765632 0.160579373521455 0.169353840500293 0.170808580111323 0.166455134924654 0.1692071958126 0.168065480255318 0.163194623277859 0.171028472729335 0.159492571645342 0.166625097955527 0.165199102125964 0.163089517881971 0.164798533537956 0.168865630014817 0.161216945969950 3 3|0 -|/ 20821508 20822243 20821794.5 20821288 20824015 - gene protein_coding_gene FALSE TRUE AT3G56080.1 dehydration-responsive protein-related similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G40280.1); similar to Os05g0472200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055814.1); similar to Os01g0828300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044685.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93959.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.300090976770163 -2.09143551170260 0.068220275253004 1 2.59213958363799 16.8058813563248 -0.300090976770163 0.183351331709934
AT1G77130_at 6.53198379699991 6.68474697174421 6.57441577046685 6.57716973569216 6.88549084563258 6.37755331322701 6.5692479819941 5.94108595905174 5.60039953302333 6.31658988791333 6.82508339453613 6.95428680478569 6.03136244245346 6.77791468976718 6.10005247977265 5.99821598088231 6.16375442239644 5.54497160120243 6.00153526060257 0.254762837487302 0.254053790100423 0.253230300121243 0.251132473274864 0.251132473274864 0.254945673279677 0.259902483836114 0.251132473274864 0.270373074152298 0.263421677297370 0.251132473274864 0.254677599750059 0.259273042930201 0.256115082198615 0.252010833523663 0.252859579407847 0.262362870401274 0.263272308447239 0.259589236507962 1 1 - 28984009 28984372 28984207.818 28983788 28986239 - gene protein_coding_gene FALSE TRUE AT1G77130.1 glycogenin glucosyltransferase (glycogenin)-related similar to glycogenin glucosyltransferase (glycogenin)-related [Arabidopsis thaliana] (TAIR:AT3G18660.1); similar to putative glycogenin [Oryza sativa (japonica cultivar-group)] (GB:AAS90653.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33316.1); similar to secondary cell wall-related glycosyltransferase family 8 [Populus tremula x Populus tremuloides] (GB:AAX33317.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.249252452634309 2.09031590221277 0.0683412932345021 1 2.59057413664193 12.6538601905949 0.249252452634309 0.142277061641451
AT3G05070_at 6.54683757835898 6.89510296329516 6.57686325703389 6.99465432577733 7.30258724206623 7.06991372988078 7.22467544979174 7.08417782651175 6.7457504122363 6.4195591332588 6.333966563873 6.0730606763673 5.85663848153695 6.05067798252326 6.31227813020122 6.10133490392127 6.00670765996618 5.95903791700386 6.48416169822594 0.206783220355907 0.195317824401350 0.192431033410033 0.192824618833451 0.186896056245782 0.196821402615107 0.197504611713491 0.192178216537017 0.192213445520565 0.202225954649889 0.190270682273007 0.189327471206378 0.190087597323030 0.193433266788301 0.194403156397707 0.186896056245782 0.194620615027856 0.187032397283732 0.196169699148772 3 3 + 1416518 1417503 1417002.636 1416154 1417812 + gene protein_coding_gene FALSE TRUE AT3G05070.1 similar to coiled-coil domain containing 12 [Danio rerio] (GB:NP_001003589.1); similar to Os06g0730800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058658.1); contains InterPro domain mRNA splicing factor, Cwf18; (InterPro:IPR013169) -0.207402387141363 -2.08962783563797 0.0684157694793687 1 2.58961218165121 13.2801198152551 -0.207402387141363 0.105224450830557
AT3G53800_at 9.17136757985974 9.19913059026533 7.63879591018513 7.93497680462833 8.98043151837376 8.41747671049795 8.46296837095646 8.34460565050623 8.21187330898453 8.56672184922906 9.03863626128565 8.7426752824509 8.28028891009035 8.31908677439058 8.57041063314192 7.77084972814325 8.22725172251962 8.58921200755415 8.18184212509947 0.190408585522337 0.194083581936759 0.201237945154954 0.191662083192053 0.196513585080226 0.190321564453554 0.199013667203885 0.196234891103134 0.216957059918841 0.186664639168897 0.192727650464295 0.185970113434287 0.199888603059144 0.207398562249064 0.193557688691068 0.193548251898324 0.209493748585987 0.200762386519331 0.189580368746865 3 0|3 /|+ 19943017 19943649 19943355.4 19941839 19943870 + gene protein_coding_gene FALSE TRUE AT3G53800.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G09350.1); similar to Os03g0271400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049691.1); similar to putative stress-induced protein [Solanum commersonii] (GB:CAJ19270.1); similar to Os03g0822700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051736.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.214721079066471 -2.08948763380402 0.0684309545813308 1 2.58941618160003 16.8999427299348 -0.214721079066471 0.112075009727169
AT2G25070_at 9.56342706614245 9.70281722176029 9.81540679667717 9.82741798155 10.2058128130912 10.0631022330440 9.67719000963595 9.79577453108952 9.46866632301275 9.53588833885405 9.71372831712533 9.19178632961941 9.6183524703222 9.61016014929696 9.38780112599645 9.75818552530749 9.51189680336031 9.38363935529423 9.52395107324546 0.0864226158254858 0.0844189952430618 0.0891888094960894 0.0844313903961614 0.0853529110863856 0.0833198306402705 0.083944884431874 0.082951417309129 0.0934977779854415 0.0861825650635023 0.0869037183584827 0.0899223773004733 0.0863060147150387 0.0859788720410676 0.0883863902805384 0.082951417309129 0.0878014508563474 0.0938490998583742 0.091511302775522 2 2 - 10670622 10671507 10671022.636 10670319 10673043 - gene protein_coding_gene FALSE TRUE AT2G25070.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31860.1); similar to Os06g0651600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058229.1); similar to Os02g0180000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046088.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE93914.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.152787298384873 2.08916452055385 0.0684659630871612 1 2.58896448684054 19.347091417246 0.152787298384873 0.0402151941887282
AT3G57340_at 7.33050463502847 7.85984367816761 7.3927285016211 7.57817551498694 8.2718323587647 7.6889645969576 7.03561251679948 7.38545405440682 7.34668841270875 6.19427630289559 6.80114208999716 6.80154932637815 6.71941775779026 7.35448810256826 6.85112708590044 6.87859572214198 6.47893782995126 6.98038360165681 6.456359094817 0.22212567144832 0.211281109041053 0.211674915812338 0.219470993715285 0.212829670590035 0.224305386093827 0.209562501156319 0.206245715003286 0.212369765910407 0.220856760558532 0.208665941307737 0.203856338988599 0.204570482326789 0.205294171006401 0.208243813534837 0.203856338988599 0.221434878379344 0.203856338988599 0.205663061042493 3 3 + 21230679 21231200 21230903.273 21229951 21231463 + gene protein_coding_gene FALSE TRUE AT3G57340.1|AT3G57340.2 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G05750.1); similar to dnaJ-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89081.1); similar to Os01g0556400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043324.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.261251054028129 2.08794397934202 0.0685983627810662 1 2.58725839655705 14.3298793786025 0.261251054028129 0.152515496013362
AT4G00040_at 6.46804511113676 6.22515066805698 6.45482476363713 6.6368215918567 6.41005719388153 6.16049700128734 5.47687266174922 5.49993462360649 6.47390669141457 7.23757833292272 6.24741735332307 5.7299278130688 6.33902583963682 6.2238390603878 5.98330838320462 6.8482469685598 6.65272889569725 6.25316588845009 7.66872212431576 0.197702370222748 0.200638669382097 0.203497419658525 0.207840020362814 0.207361034667730 0.197524827248115 0.199579570016129 0.198362797207219 0.208413361712398 0.203727991214126 0.193995630062909 0.197785978484278 0.197455850484219 0.201868777913495 0.221024645450565 0.194291948065158 0.201049063048458 0.206393574163790 0.198705654129283 4 4 + 15310 15860 15524.364 14627 16079 + gene protein_coding_gene FALSE TRUE AT4G00040.1 chalcone and stilbene synthase family protein similar to chalcone and stilbene synthase family protein [Arabidopsis thaliana] (TAIR:AT1G02050.1); similar to anther-specific protein [Nicotiana sylvestris] (GB:CAA74847.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain Type III polyketide synthase; (InterPro:IPR011141); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.171989409699171 -2.08752824867808 0.0686435164544219 1 2.58667734002732 12.8722470726559 -0.171989409699171 0.0681168964483475
AT1G34260_at 7.67148036817932 8.14372757808313 7.37203261586882 7.6985619160313 7.7331007496753 7.81188034549271 7.41572912436144 7.50277759537544 7.6828671623869 7.05905690355502 6.92509858999816 6.90096370979896 6.67706579763466 7.332564844447 6.05100352467743 6.79510358345293 6.69847539132207 6.43240622192221 6.56744553050025 0.166590308390202 0.167189148741235 0.165871739880723 0.16055767625431 0.159778555935276 0.164106026845291 0.166351219991840 0.175866898803631 0.162925770427767 0.160085667152457 0.156946646719349 0.157948529024763 0.158663961713222 0.163224760572225 0.193051412709183 0.161042170254653 0.168728276643829 0.172377494336745 0.171733816299147 1 1 + 12490987 12491744 12491382.364 12485945 12492126 + gene protein_coding_gene FALSE TRUE AT1G34260.1 phosphatidylinositol-4-phosphate 5-kinase family protein similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33240.2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71010.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Phosphatidylinositol-4-phosphate 5-Kinase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96911.2); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498) -0.203036375320095 -2.08572065123286 0.0688401806913508 1 2.58415124816825 14.5835154899938 -0.203036375320095 0.101413941730888
AT4G00760_at 6.15808251769002 5.23134585431281 6.39253826923643 5.81405536109881 7.26601953111069 6.515677368856 6.1228815229175 5.23249242942793 5.282366167954 6.47102149406616 6.22831776120543 5.60166854803524 5.79816099587964 6.25707608689885 5.93548297774246 5.86055375107505 5.80425083583007 6.08949453783044 5.98870055996132 0.162929202521725 0.171274244515308 0.169030916097155 0.168400343728855 0.177030310173248 0.168999396504781 0.166937823029981 0.168701248981573 0.173254829062083 0.162929202521725 0.174447906028508 0.168274927449909 0.164954252535583 0.169885279240357 0.170729134867447 0.168551008593791 0.170249929777502 0.174031433669730 0.16491432661094 4 4 - 327246 327948 327425 327025 329048 - gene protein_coding_gene FALSE TRUE AT4G00760.1 APRR8 (PSEUDO-RESPONSE REGULATOR 8); transcription regulator Encodes a response-regulator like protein. Identical to Putative two-component response regulator-like APRR8 (Pseudo-response regulator 8) (APRR8) [Arabidopsis Thaliana] (GB:O23100); similar to ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT4G31920.1); similar to SRR391 [Striga asiatica] (GB:ABG35773.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.421859165486701 2.08502403917976 0.0689161172183557 1 2.58317789174404 12.0220891539009 0.421859165486701 0.276307631101767
AT4G39240_at 7.55858140747836 7.693408393785 7.64349999069496 7.72867186751621 8.1377510547276 7.60876897052062 7.79578460687873 7.55995577234046 7.1386221128135 7.60722680622179 7.5502405886992 7.65505330648284 7.35963003623107 7.90992713317556 7.52811021532718 7.69180615906947 7.36546908183674 7.63580350663203 7.164767394863 0.170223516525173 0.18238602692387 0.175431183931284 0.175737620633614 0.171256809899806 0.173736753307337 0.168625139482382 0.185844784842543 0.208983248545966 0.169805910279186 0.169752307838121 0.168447177964293 0.179389833581281 0.174636046745836 0.169633042520768 0.168587217209217 0.173340294224998 0.178494359786483 0.174401912336945 4 4 - 18269609 18270163 18269848.727 18269144 18270781 - gene protein_coding_gene FALSE TRUE AT4G39240.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14905.2); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.205603328938269 2.08489366679681 0.0689303379334314 1 2.58299573531243 15.1610746453583 0.205603328938269 0.103958165522598
AT1G69370_at 6.95702963317001 7.29360550819307 6.01154854233117 6.58842123098613 7.0890828578997 6.77176639552766 5.6886126955376 6.42606323783283 6.33482096794266 5.56171313282015 6.27561116244914 6.21990582019777 6.42582466083611 6.63827726911956 6.09171030998299 7.08313997765953 6.14589678342295 6.57674222390663 5.69763144505658 0.254532807919773 0.25068838450996 0.255230202404640 0.250128884160631 0.250720793388223 0.253231826176035 0.252280803071625 0.240639415183336 0.252428123416656 0.257836097368282 0.243320914898238 0.240639415183336 0.243193003897591 0.240639415183336 0.249765469625803 0.242485871875366 0.246713875382882 0.241046233078823 0.24764672388606 1 1|0 +|/ 26084401 26085156 26084782.889 26083619 26085390 + gene protein_coding_gene FALSE TRUE AT1G69370.1 CM3 (CHORISMATE MUTASE 3); chorismate mutase Encodes chorismate mutase 3 (CM3). similar to CM1 (chorismate mutase 1), chorismate mutase [Arabidopsis thaliana] (TAIR:AT3G29200.1); similar to putative chorismate mutase [Fagus sylvatica] (GB:ABA54871.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) 0.295646832671578 2.08365104580108 0.0690660232765832 1 2.58125969024870 12.7516964499614 0.295646832671578 0.180723137045104
AT2G23760_at 8.1357451964539 8.79546940564146 8.76363107657567 8.99894648601547 9.55777458295477 9.25773682814877 8.83300994996867 9.17044223053823 9.24500692629789 8.99368914178554 9.78916426781623 9.53860192318366 9.74723081020277 9.09179268009283 8.97427050527694 9.13768405496207 8.31644877580765 9.14087931325964 9.14125694461915 0.166727943001128 0.143340744518035 0.167532741435176 0.15001784758647 0.144871848195893 0.159261942974934 0.155973209478095 0.143642005829509 0.159472614272774 0.153552935580564 0.143340744518035 0.143340744518035 0.147555469679662 0.165556772946586 0.152884431539470 0.147631650443687 0.195717287895487 0.160237494896896 0.146132752611674 2 2|0 -|/ 10115049 10117730 10115596.222 10114789 10120293 - gene protein_coding_gene FALSE TRUE AT2G23760.1|AT2G23760.2|AT2G23760.3 BLH4 (BLH4); DNA binding / transcription factor|BLH4 (BLH4); DNA binding BEL1-like homeobox 4 (BLH4) similar to BLH2 (BEL1-LIKE HOMEODOMAIN 2), DNA binding [Arabidopsis thaliana] (TAIR:AT4G36870.2); similar to homeodomain protein [Malus x domestica] (GB:AAF43095.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.250606792432071 2.08237910461590 0.0692051788543842 1 2.57948295726432 18.1109244923168 0.250606792432071 0.144217217014738
AT1G15180_at 5.24171606296845 5.25961431031542 4.95087597564337 4.95297152868859 6.27384634434664 5.84495692524303 6.1950948632955 6.7263222529776 5.71962401102163 6.05403046409849 5.86954251397251 5.93556531772101 6.23773510508549 6.03708926907971 5.89841830243044 5.77507823552633 5.94863467923594 5.7489190660618 6.29440979704908 0.16894574458714 0.164396046785881 0.176053628892008 0.168212825811444 0.167135439947377 0.173756127445264 0.164617847944061 0.174252708485862 0.175766406637795 0.167916325795000 0.177951104851904 0.168049044867228 0.168706765696842 0.165125817559088 0.176130817086168 0.172865281382564 0.174310302124098 0.176254442379935 0.167972814549613 1 0|1 /|+ 5225608 5225876 5225717.1 5224380 5226697 + gene protein_coding_gene FALSE TRUE AT1G15180.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15150.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15160.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G15170.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE93671.1); similar to Os01g0504500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043143.1); similar to Os01g0684900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043893.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) -0.220669729246375 -2.08223460716882 0.0692210046817528 1 2.57928113113507 11.6577052338659 -0.220669729246375 0.118194360562753
AT4G33350_at 7.24078820300109 7.81403299215302 7.78022041128036 7.55891222395985 8.04391707991589 7.29113453956843 8.3605700558924 7.89483606916992 6.76971709357696 6.78152366922856 7.48564173140155 7.64609783595229 6.85344458101006 7.45020862267218 7.81823310305774 7.37191477537021 7.05755444062286 7.1499633016007 6.21826468621746 0.215500248477279 0.209720177405704 0.226246252043780 0.208291928883176 0.219835313320995 0.237332594544497 0.212288714664748 0.208213218650451 0.228903238253415 0.206581258592184 0.211839027888402 0.206438487800372 0.203331451923809 0.207908503180771 0.205442503137837 0.213557243773909 0.230650014805565 0.203331451923809 0.210663592351303 4 4|0 -|/ 16065435 16066481 16066078.125 16064552 16066740 - gene protein_coding_gene FALSE TRUE AT4G33350.1 chloroplast inner membrane import protein Tic22, putative similar to chloroplast inner membrane import protein Tic22, putative [Arabidopsis thaliana] (TAIR:AT3G23710.1); similar to Tic22 [Pisum sativum] (GB:AAC64606.1); contains InterPro domain Chloroplast protein import component Tic22; (InterPro:IPR005692); contains InterPro domain Tic22-like; (InterPro:IPR007378) 0.302643191456824 2.08154975512623 0.0692960597087938 1 2.57832461624773 14.7200351711853 0.302643191456824 0.186480079625585
AT4G19420_at 9.34075589709221 9.56324514982373 10.5484515562471 10.4224069699012 11.0003166275278 10.3089986776964 9.9677846635875 9.5362737061191 8.59236922782577 8.80097359720945 6.70939124615947 4.15418880777111 8.28768421903455 8.11659966875823 4.31024629871397 8.52287760930682 8.67424889371481 7.53875022657093 8.15621329467623 0.220994197509923 0.227074752419943 0.228635187249692 0.228283999982466 0.228885931437091 0.232234138971188 0.228832477388232 0.229881824278057 0.238277765854914 0.225213559534571 0.23745300896177 0.238599635471931 0.232683132207343 0.236162452066294 0.257028506221384 0.222633729335198 0.225144145494921 0.236032159481038 0.226127461432834 4 4|0 -|/ 10587539 10589279 10588692 10587177 10590561 - gene protein_coding_gene FALSE TRUE AT4G19420.1|AT4G19420.2 pectinacetylesterase family protein similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT4G19410.1); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.254620865814632 -2.08017128057075 0.0694473706450584 1 2.57639958267135 17.8639126949115 -0.254620865814632 0.147808430830867
AT1G34030_at 8.80071968244899 8.88155113432216 8.29876238120015 8.38148125820577 8.94148522928694 8.02415348349434 9.35992354922167 9.22265387491265 7.52046892199304 8.22601912058708 7.84678213556348 8.78797291562687 8.03316538942816 7.8318218215549 8.83366614210866 7.82763312847674 7.73146281873532 7.63070915404238 8.11381495595736 0.174157633984969 0.170760568485912 0.175168311037023 0.167975372807336 0.170787991196480 0.175074932000005 0.173871986959946 0.177431128576895 0.199240740198515 0.170793957410789 0.181270237436328 0.167849238886566 0.173762183607362 0.171932337692542 0.174110819248423 0.169747640659060 0.209496444793096 0.195707845809732 0.170462769856977 1 1 - 12370318 12371138 12370709.545 12370045 12371530 - gene protein_coding_gene FALSE TRUE AT1G34030.1 40S ribosomal protein S18 (RPS18B) Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to RPS18C (S18 RIBOSOMAL PROTEIN), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G09800.1); similar to PFL (POINTED FIRST LEAVES), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G22780.1); similar to Ribosomal protein S13 [Medicago truncatula] (GB:ABE81204.1); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.271387058416664 -2.07903722909018 0.0695720924906437 1 2.57481613154642 16.7482593346555 -0.271387058416664 0.161759058083015
AT1G63780_at 5.20579285795938 5.57374290834132 5.84491945367488 5.64322060530154 5.21685382299255 5.0474441548813 5.69036718706488 5.73466493047139 4.004645982615 3.71711497715495 3.66255387743818 3.54492670359748 3.51753061611593 3.74386562351905 3.74881399823301 3.97259214526829 4.57312171486053 3.71819860859453 4.45196042914529 0.233137993042143 0.230108070060211 0.239970081374458 0.237364819484371 0.230108070060211 0.252583502815054 0.239692478205349 0.240758400478757 0.242285199602162 0.230261548051555 0.233378590661794 0.235838296213691 0.230349110828019 0.233572592633858 0.230108070060211 0.230108070060211 0.231699510158612 0.234450307513354 0.236512609619059 1 1|0 -|/ 23668732 23670282 23669528 23668497 23671030 - gene protein_coding_gene FALSE TRUE AT1G63780.1 IMP4 Small nucleolar ribonucleoprotein protein involved in ribosomal RNA processing. Located in nucleolus and cajal bodies. similar to MEE49 (maternal effect embryo arrest 49) [Arabidopsis thaliana] (TAIR:AT4G01560.1); similar to putative U3 snoRNP protein IMP4 [Oryza sativa (japonica cultivar-group)] (GB:BAC99390.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.180369590215857 -2.07902902424147 0.0695729956436003 1 2.57480467610976 9.4286795103818 -0.180369590215857 0.078684054620994
AT2G34460_at 9.89537357460931 10.0731232146035 10.0908732056890 10.1265876472586 10.1928517409781 9.7776763480788 11.3108548640397 11.3324465477032 10.0317000763553 10.8267675261339 10.8612033203736 10.8018442817142 10.7379492007853 11.0282099495451 10.7453155299175 10.9524255459189 10.2867439625100 10.7323098347444 10.7092717617405 0.113380484255540 0.107581604948242 0.113902082549884 0.116403658930955 0.112552385666948 0.119138708922975 0.118368127387052 0.109426089594288 0.129496871872453 0.111662318719973 0.110752249066180 0.110178190778366 0.112389184916635 0.109877934684712 0.108773731100934 0.109211341310170 0.124122364865908 0.110351676520266 0.109467496326998 2 0|2 /|+ 14537243 14537758 14537486.7 14536687 14538037 + gene protein_coding_gene FALSE TRUE AT2G34460.1 flavin reductase-related similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT3G18890.1); similar to NAD-dependent epimerase/dehydratase [Medicago truncatula] (GB:ABE78360.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.180140949812875 -2.07841165049843 0.069640986037817 1 2.57394274546489 20.9953883885026 -0.180140949812875 0.0784888781028214
AT3G13040_at 9.76704875263985 9.92897770047023 10.1634111597798 10.2732726445414 10.5212107751868 10.2394289911580 10.9037597009851 10.7852904828409 10.8836408257265 10.9723947446249 10.7178093225752 10.5396464017711 10.6779622414256 10.7927381851117 10.2885506680398 10.7571054663299 10.6436735060174 10.6469254057424 10.9040726849117 0.0738972907353035 0.068798108526637 0.0745080491005822 0.0680642230735413 0.0689761999534402 0.0707596158910302 0.0693789054884263 0.068823273316619 0.0705255067231688 0.0682405930749853 0.0702572545771033 0.0693203950324404 0.068656478612073 0.0696850594060676 0.0699448454048643 0.0685217483425604 0.0706950958137824 0.0707165980310738 0.0680642230735413 3 0|3 /|- 4172449 4173284 4172637.5 4172149 4175255 - gene protein_coding_gene FALSE TRUE AT3G13040.1|AT3G13040.2 myb family transcription factor similar to PHR1 (PHOSPHATE STARVATION RESPONSE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT4G28610.1); similar to transfactor [Nicotiana tabacum] (GB:BAA75684.1); similar to Os06g0703900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058503.1); similar to Os02g0139000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045841.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.166961476014301 -2.07778965812343 0.0697095503022423 1 2.57307443365988 21.0993437683074 -0.166961476014301 0.062808701865527
AT1G64950_at 7.51951731268321 7.68947539521225 8.20114899643353 7.95499877752641 7.36499405039669 6.84934241516727 7.6618909905947 7.48122685008384 6.87613397631231 7.73514196730937 6.73890158270597 6.68535933891124 7.09947304401795 6.75302904926126 6.10980076229544 7.22426979764959 7.66002793516371 6.68691343890078 7.2653115811821 0.183408919295504 0.179511128686691 0.179511128686691 0.183274569174607 0.191828689448254 0.189829582323808 0.196871189589811 0.179511128686691 0.183120816490269 0.193987708534461 0.191982399943187 0.185515840526373 0.186530177044759 0.183552981533391 0.185396828290582 0.179511128686691 0.185227089459925 0.193613034148318 0.179511128686691 1 1 + 24132659 24132669 24132664.125 24131224 24133121 + gene protein_coding_gene FALSE TRUE AT1G64950.1 CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5); oxygen binding member of CYP89A similar to CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64940.1); similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to CYP89A7 (cytochrome P450, family 87, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.208940275125272 -2.07778225063719 0.0697103672485282 1 2.57306409309038 14.6712832036195 -0.208940275125272 0.107796779501964
AT1G25520_at 8.08830337019879 8.88203086383367 8.03463681315493 8.6088804952529 8.55818019779352 8.06992410809575 8.02231411752484 8.49605919681272 7.4213816338966 7.21148137175138 6.81272222826304 6.57719202300349 6.89928431490299 6.54594404007187 5.99442015736055 7.35611545390423 6.63717798127674 6.42522124152866 7.13729091169798 0.238845640966170 0.231346905293502 0.237221136829131 0.228145691075139 0.233608562385288 0.241793590144857 0.245522880268112 0.229626542429943 0.245670562535234 0.236921330670506 0.243636443616822 0.232521527910308 0.237895164876099 0.231528414512546 0.233355420885328 0.228145691075139 0.257509645982497 0.249295603726785 0.231349472767779 1 1|0 +|/ 8962838 8964125 8963646.625 8962112 8964549 + gene protein_coding_gene FALSE TRUE AT1G25520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68650.1); similar to Os08g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061871.1); similar to PREDICTED: similar to conserved hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_798718.2); contains InterPro domain Protein of unknown function UPF0016; (InterPro:IPR001727) -0.327489887963966 -2.07673963944463 0.0698254460234955 1 2.57160874285351 15.3014049715772 -0.327489887963966 0.206406233903384
AT4G02680_at 8.21929978251095 8.43637114635824 7.91557225240172 8.09917149688717 8.75629231794326 8.56720191979229 7.96940967640633 8.18746573431347 8.07224597915832 8.38133697767076 8.5590153268502 8.68183903378667 8.55819355638277 8.3501309967145 8.20621806653047 8.6030303043774 8.49503357670166 8.50774264837442 8.38995660481717 0.157059364915609 0.156611094247971 0.162370983542278 0.161600832275944 0.160811505432444 0.169972482037651 0.157294938988319 0.157348500476267 0.163776766946885 0.160446003616143 0.168502023130436 0.160580571248253 0.160185044936077 0.161847388028712 0.166286159729025 0.155781779745467 0.170589652784887 0.166235289618281 0.159869201918368 4 4|0 -|/ 1181223 1182056 1181530.889 1181049 1184930 - gene protein_coding_gene FALSE TRUE AT4G02680.1 EOL1 (ETO1-LIKE 1); binding Encodes a paralog of ETO1, which is a negative regulator of ACS5 (a key enzyme in ethylene biosynthesis pathway). EOL1 also interacts with and inhibits the activity of ACS5. Identical to ETO1-like protein 1 (Ethylene overproducer 1-like protein 1) (EOL1) [Arabidopsis Thaliana] (GB:Q9ZQX6); similar to ETO1 (ETHYLENE OVERPRODUCER 1) [Arabidopsis thaliana] (TAIR:AT3G51770.2); similar to EOL2 (ETO1-LIKE 2), binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G58550.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE80301.1); similar to ethylene-overproducer1-like protein [Lycopersicon esculentum] (GB:ABB46489.1); similar to ethylene overproducer-like 1 [Lycopersicon esculentum] (GB:AAZ08351.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.172696748345772 2.07614445828989 0.0698912221203701 1 2.57077803206451 16.6570131871251 0.172696748345772 0.0701100557897637
AT1G18890_at 7.51507633019106 7.90418058392036 7.98467400693325 8.21211407949055 7.51134555141656 7.25801156894988 6.15940640376467 6.38934920988421 7.28585839533823 6.44192444762182 6.46357681748072 6.95004496053394 6.16616121092057 6.65928374836433 6.43912753581756 6.03119023608279 5.49788478306557 6.24898102214899 6.25079870298688 0.187146321204450 0.186842891815522 0.203445384789985 0.201298617188587 0.186945430682198 0.195383403774821 0.181819337223795 0.188018866664862 0.187598404272248 0.193361657366383 0.187010135847332 0.186177927636619 0.185447767101755 0.181819337223795 0.192448525997450 0.187623739780638 0.193737157212667 0.189332849793248 0.189620255229927 1 0|1 /|- 6523471 6524214 6523879.8 6522755 6525953 - gene protein_coding_gene FALSE TRUE AT1G18890.1 ATCDPK1; calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase encodes a calcium-dependent protein kinase whose gene expression is induced by dehydration and high salt. Kinase activity could not be detected in vitro. similar to CPK7 (CALMODULIN-DOMAIN PROTEIN KINASE 7), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12480.1); similar to CPK13 (calcium-dependent protein kinase 13), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT3G51850.1); similar to CPK30 (calcium-dependent protein kinase 30), calcium- and calmodulin-dependent protein kinase/ kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT1G74740.1); similar to calcium-dependent protein kinase 4 [Capsicum annuum] (GB:AAX07129.1); similar to calcium-dependent calmodulin-independent protein kinase isoform 2 [Cicer arietinum] (GB:AAP72282.2); similar to calcium-dependent protein kinase 8 [Nicotiana plumba (GB:CAG27839.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.198518638538489 2.07593940455741 0.0699138974391269 1 2.57049184723796 13.8500489524609 0.198518638538489 0.0979224746210181
AFFX-BioDn-5_at 9.83661361803375 9.61765522142893 10.0639633892767 9.78078074586996 9.31726534936988 9.71333610049157 9.47594426453601 9.85338853396433 0.440866295361453 0.513769504728033 0.72411382796088 0.676478110963599 0.994251716658417 0.551229467950304 0.781213264215085 0.786961800713564 1.12973065907996 1.09309746841688 0.354140695897533 0.339490402377475 0.335492106688492 0.337807115888678 0.33817580877318 0.335398556931042 0.336761881102452 0.330901990080619 0.339654454856537 0.326535971731859 0.326535971731859 0.327655178233962 0.32719075725981 0.328656064330746 0.327905600692731 0.327554798038252 0.326985335220575 0.326535971731859 0.327683105936143 0.326723194562742 NA NA NA NA NA FALSE FALSE 0.214405847130218 2.07517034756784 0.0699990051721843 1 2.56941857243206 10.3465650886166 0.214405847130218 0.113145384466055
ATCG00720_at 13.7581093660551 13.9784213987434 14.1686422963712 14.1557360757239 13.9150158577103 13.9804161839103 14.0789062338516 14.2267443637028 14.5717515356547 14.4686956956362 14.8738440535894 14.8330338781885 14.7380002708539 14.7638620965330 14.6434488333267 14.7356335875108 14.5218302775437 14.7271078226689 14.3465041513349 0.0542634500163698 0.0515280168591459 0.0540003355296586 0.0515280168591459 0.0518218733674275 0.0585773158710787 0.0516787237968497 0.0522368977656563 0.0584200698307664 0.0525389470223089 0.051718361964225 0.0516122843796267 0.0525614750345270 0.05216830413955 0.0518937249405959 0.0519854311672595 0.0572078344667174 0.0546631619619756 0.051562378173002 C C + 75713 76220 75966.909 74841 76292 + gene protein_coding_gene FALSE TRUE ATCG00720.1 Encodes the cytochrome b(6) subunit of the cytochrome b6f complex. Identical to Cytochrome b6 (petB) [Arabidopsis Thaliana] (GB:P56773); similar to cytochrome b (MTCYB) (COB) (CYTB) [Arabidopsis thaliana] (TAIR:AT2G07727.1); similar to cytochrome b6 [Spinacia oleracea] (GB:NP_054964.1); similar to Cytochrome b6 (GB:P06247); contains InterPro domain Cytochrome b6; (InterPro:IPR012232); contains InterPro domain Cytochrome b/b6, N-terminal; (InterPro:IPR005797) 0.155842618912811 2.07410430805755 0.0701171447874841 1 2.56793100834996 28.628705087043 0.155842618912811 0.0473415309494057
AT2G27020_at 9.52191093506175 9.65187183591765 9.78902874992737 9.88931151526764 9.76055467272958 9.09074815750862 9.650942728369 9.61967299967486 8.44769629684022 8.92478901015439 9.06559562775804 9.20847302075803 8.80004114038718 8.97298506896793 9.42474781712732 8.94431701750163 8.9045583322696 8.87805401859126 8.43876286127987 0.131461174171288 0.127169537293446 0.132033077563671 0.132769601947495 0.126841197278728 0.140742886455052 0.132454429875545 0.135827749371844 0.144852953683444 0.125811586834826 0.125653262397359 0.134050351363868 0.133819770533156 0.135323316605892 0.127550975160296 0.124861874528616 0.133918671207712 0.130816794000030 0.130540743907677 2 2|0 -|/ 11535611 11537302 11536700.444 11535426 11538054 - gene protein_coding_gene FALSE TRUE AT2G27020.1 PAG1 (20S proteasome alpha subunit G1); peptidase Encodes 20S proteasome subunit PAG1 (PAG1). Identical to Proteasome subunit alpha type 3 (EC 3.4.25.1) (Proteasome subunit alpha type 7) (20S proteasome alpha subunit G-1) (Proteasome component 8) (DiDi 17A-2a) (PAG1) [Arabidopsis Thaliana] (GB:O23715;GB:O81151;GB:Q9M3S3); similar to PAE2 (20S proteasome alpha subunit E2), peptidase [Arabidopsis thaliana] (TAIR:AT3G14290.1); similar to Proteasome subunit alpha type 3 (20S proteasome alpha subunit G) (20S proteasome subunit alpha-7) (Proteasome component C8) (GB:O24362); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.221204132548894 2.07403011907674 0.0701253736852185 1 2.56782749159362 18.4360531467295 0.221204132548894 0.119466019774554
AT3G44140_at 6.32155768364341 6.6556716266451 6.27750478912962 6.56520087652669 6.27822144653825 6.51154873708952 6.67479484461275 6.96393744728836 7.64991609304244 7.6101186701004 7.3880072001579 7.24454286318007 7.35166480508725 7.79403596709294 7.2183135877689 7.56606637147743 7.34751697078965 7.77160784514772 7.58228846118677 0.251059820398565 0.228180374395243 0.231735468109276 0.242043823013144 0.22835001870447 0.233514359081311 0.215873546348596 0.240408597404980 0.216071095823980 0.219687191187298 0.222103659420167 0.219049449013152 0.215873546348596 0.223648032159643 0.215873546348596 0.216452198427256 0.224871493174153 0.218803702416661 0.220460263893563 3 3|0 -|/ 15896110 15896342 15896197.5 15896064 15896367 - gene protein_coding_gene FALSE TRUE AT3G44140.1 unknown protein -0.199879864165928 -2.07046797993786 0.0705215836856797 1 2.56285833729877 14.0682182778247 -0.199879864165928 0.0997801189427497
AT3G10760_at 6.56692386448165 6.69872753247798 7.15259160345973 6.77150206918003 7.03740717156051 7.12615546202227 7.70693966042774 7.64349762851127 6.68149657832415 6.51623282914873 7.42344954349395 7.46912503872709 7.29975289688595 7.3331077675246 6.90245954759613 7.44616192547474 6.99750228022207 7.17310923392813 7.12842315004282 0.164167595297159 0.155882248022032 0.158942100243429 0.156627068426557 0.156194622479768 0.166016428273666 0.161401050886385 0.152316048871968 0.173442501231455 0.163624571193368 0.161603176775027 0.153673907015541 0.158016372444734 0.165510418146208 0.164279188351381 0.156706423086747 0.161861411357574 0.157968300647466 0.159394338792690 3 3 + 3370347 3370794 3370526.909 3369585 3371232 + gene protein_coding_gene FALSE TRUE AT3G10760.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G05090.1); similar to induced protein MgI1 [Oryza sativa (japonica cultivar-group)] (GB:AAS90600.1); similar to Os05g0412000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055539.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.174045624236996 2.07034972813587 0.0705347737823433 1 2.56269341544387 14.1034519815502 0.174045624236996 0.072291002473768
AT4G34680_at 5.77919201637456 5.80123566155983 6.04272399646644 6.0211855576844 5.88378863046404 6.26548513186088 6.23033128892039 6.68652310097082 4.97066032131522 5.09209450034103 4.82667476426369 4.79995249771115 4.95171618384583 4.94812041290953 4.0467877373173 5.40493095628095 5.01920467788839 4.61959725070081 5.42478419747878 0.216101147889810 0.203979110594782 0.212919234773672 0.207158387199976 0.203979110594782 0.213750026494794 0.213863821032172 0.203979110594782 0.211981453615941 0.210733793870979 0.206164773443237 0.21204601714665 0.210808877078511 0.207219438477128 0.209874064343419 0.20464333484315 0.212096858734598 0.216947143094594 0.210925047272336 4 4|0 +|/ 16553937 16554474 16554236.1 16553395 16554745 + gene protein_coding_gene FALSE TRUE AT4G34680.1|AT4G34680.2 GATA transcription factor 3, putative (GATA-3) Identical to GATA transcription factor 3 (AtGATA-3) (GATA3) [Arabidopsis Thaliana] (GB:Q8L4M6;GB:O49742;GB:O65690); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT5G66320.2); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT4G36240.1); similar to Zinc finger, GATA-type [Medicago truncatula] (GB:ABE89629.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) -0.203207317050548 -2.06990224167192 0.0705847091863846 1 2.56206934337376 11.0836262062842 -0.203207317050548 0.103073341540956
AT2G03980_at 9.22437058112502 9.58256778588446 8.89923787486263 8.96767998929771 8.97513785209493 9.04458028408638 8.93889449441604 9.20855692866295 8.48109855964889 8.52242686275126 8.29410209096122 8.45873084012664 8.38779894013946 8.50627986007126 8.33843988517648 8.19335775147765 8.36630515130594 8.01997001015407 8.23875808521365 0.151756244931479 0.154952824067117 0.153741419048276 0.151756244931479 0.157452193210423 0.151756244931479 0.163881698000850 0.162570866061186 0.165521370940389 0.153260998190717 0.15676089810848 0.155528767500825 0.159758104975994 0.163560993222938 0.152949987010666 0.155091143743174 0.168786079967782 0.161863042818443 0.151756244931479 2 2 + 1261822 1262346 1262175.182 1259196 1262549 + gene protein_coding_gene FALSE TRUE AT2G03980.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G04020.1); similar to GDSL-like Lipase/Acylhydrolase [Medicago truncatula] (GB:ABE91416.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.180204941899024 -2.06969693278768 0.0706076312565688 1 2.56178302806119 17.4724870081610 -0.180204941899024 0.0794035523417337
AT3G12670_at 7.4680568471452 7.82527777662771 7.11860444895165 6.84532649942036 8.09634061797714 7.30038416527507 7.5883955651099 7.53492391351974 7.04629543449564 6.89837217217925 6.6361907702683 6.85628553439588 6.8135224953556 6.74601221373121 7.65653145472374 6.6720590071441 6.26164553233707 6.71435686714691 7.24331246806117 0.191598137575927 0.187532182257838 0.202351530130427 0.188726345939071 0.192129853164463 0.207909403677026 0.190433771159653 0.188712310477138 0.194448230525276 0.193173946691226 0.188553871846739 0.188812349098889 0.187535444995426 0.192849438057904 0.187532182257838 0.187532182257838 0.205356576718801 0.194091839754995 0.188493727468155 3 3|0 -|/ 4020483 4021359 4020928.333 4020127 4024275 - gene protein_coding_gene FALSE TRUE AT3G12670.1 EMB2742 (EMBRYO DEFECTIVE 2742); CTP synthase similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT2G34890.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to putative CTP synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAD61286.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.266042066609375 -2.06863677591050 0.0707261092652916 1 2.56030469596493 14.4007814839033 -0.266042066609375 0.158483827926324
AT4G33580_at 5.67930308723225 5.89055435765259 5.3441091284567 5.47129475430578 5.87409784261627 5.67173000265853 6.79920290362174 6.81129654947034 6.39853978759346 6.25943165635029 6.84556964274228 6.99769202722121 6.7730488546225 6.55565740053403 6.8222824267148 6.60304021101238 6.35252313987252 6.6273779413027 6.28243734791969 0.142291473847424 0.139094683016936 0.151810801093768 0.157941689296965 0.143343922906266 0.139149474824915 0.138013409844617 0.140984293028295 0.152185423812495 0.145804829585690 0.137107188856456 0.140088607833258 0.137537732764194 0.144254207942307 0.139666083339518 0.136179304753658 0.147018810243746 0.143529358458685 0.136633952535531 4 4|0 +|/ 16138363 16141227 16139977.467 16138361 16141626 + gene protein_coding_gene FALSE TRUE AT4G33580.1|AT4G33580.2 carbonic anhydrase family protein / carbonate dehydratase family protein|carbonate dehydratase/ zinc ion binding similar to carbonate dehydratase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G58180.3); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); similar to carbonic anhydrase 2 [Flaveria pringlei] (GB:ABC41657.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) -0.160550967134961 -2.06726375068430 0.0708798384885255 1 2.55839038262302 12.4480078546471 -0.160550967134961 0.0552427464684494
AT3G54480_at 7.99281876983108 7.9083482450376 8.09592876539188 8.29002269143115 8.78571569575924 8.35036352669015 7.9640503842446 7.71575456920403 7.62360094766596 7.61915715007602 7.49726100857626 7.43484957173725 7.94673353813562 7.77880130711489 7.36286844846251 7.7653368323714 8.03264055635766 7.73814387921025 8.13331575999447 0.150143925778509 0.144776802806575 0.157869140313870 0.147508510536406 0.151532700758819 0.152991269699808 0.145997543858463 0.152179997276761 0.148578652804111 0.147140388215008 0.148996567437453 0.151093884760984 0.145447527396184 0.150684520357355 0.147752075794305 0.144769268869672 0.152030352584928 0.147799736960289 0.144585539736550 3 3|0 -|/ 20181878 20183572 20182267.625 20181663 20184394 - gene protein_coding_gene FALSE TRUE AT3G54480.1|AT3G54480.2 SKIP5 (SKP1-INTERACTING PARTNER 5) Encodes an SKP1 interacting partner (SKIP5). similar to SKIP5-like protein [Lycopersicon esculentum] (GB:AAL05932.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)|similar to SKIP5-like protein [Lycopersicon esculentum] (GB:AAL05932.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.193909725619512 2.06711558740628 0.0708964467784105 1 2.55818382896587 15.8811773369443 0.193909725619512 0.094150332919045
AT3G27240_at 9.39894684020937 9.64787368214675 9.82026136441551 9.82005247727353 9.06161429235357 9.10495931983259 9.90347046973413 10.0300309827604 8.31261843624564 9.22533321908964 9.49386600745104 9.526283350618 9.49089027109616 9.24941553085374 9.55016011332277 9.26765088849063 9.38054744728965 9.26277385269248 8.85319521387447 0.106551999861145 0.0996107922601565 0.0996107922601565 0.0997745744709885 0.0996107922601565 0.106993515354860 0.0996107922601565 0.101760004583905 0.120305636036675 0.105443127125462 0.101665184891713 0.0996107922601565 0.100329576658359 0.107224135805737 0.104114429791517 0.103478379794677 0.105007487405409 0.114372451436217 0.108487151060305 3 3|0 -|/ 10057393 10058394 10057954.222 10057026 10059953 - gene protein_coding_gene FALSE TRUE AT3G27240.1 cytochrome c1, putative similar to cytochrome c1, putative [Arabidopsis thaliana] (TAIR:AT5G40810.1); similar to Cytochrome c, monohaem [Medicago truncatula] (GB:ABE81122.1); contains InterPro domain Cytochrome c, monohaem; (InterPro:IPR009056); contains InterPro domain Cytochrome c region; (InterPro:IPR012282); contains InterPro domain Cytochrome c1; (InterPro:IPR002326) 0.156145423039844 2.06507166060998 0.0711259451476651 1 2.55533480127031 18.6982748731558 0.156145423039844 0.0489047002698286
AT3G59020_at 8.42560951325696 8.27431392122337 8.38870426381758 8.28571015700617 7.90882184563322 7.98316686588482 7.78837841614359 8.05889770141619 7.47879398853273 7.65295550582674 8.00611500011894 8.04170792638314 7.64079119337253 8.00438725614232 8.1343304481879 7.79633371643299 8.0252670495929 7.48797297632928 7.58529957461013 0.152065337367237 0.161176291957648 0.161375880132956 0.166731883564544 0.152575907455462 0.161957696551635 0.149115532532882 0.153531160774994 0.163833656594533 0.159751196013116 0.156290914131087 0.148697578761340 0.162463615388912 0.162557570793176 0.150213418344282 0.155430969026497 0.167926591245074 0.156697896870658 0.159827476925912 3 3|0 -|/ 21822031 21822751 21822414.7 21821237 21828532 - gene protein_coding_gene FALSE TRUE AT3G59020.1|AT3G59020.2 protein transporter similar to SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2), protein transporter [Arabidopsis thaliana] (TAIR:AT2G31660.1); similar to Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) (ISS) [Ostreococcus tauri] (GB:CAL58278.1); similar to OSIGBa0137O04.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66582.1); similar to OSJNBa0008A08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01598.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494)|similar to SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2), protein transporter [Arabidopsis thaliana] (TAIR:AT2G31660.1); similar to Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) (ISS) [Ostreococcus tauri] (GB:CAL58278.1); similar to OSIGBa0137O04.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66582.1); similar to OSJNBa0008A08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01598.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Exportin 1-like; (InterPro:IPR013598); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) 0.162282200619445 2.06455628018217 0.0711839272421179 1 2.55461653096762 15.871431778286 0.162282200619445 0.0579684067014487
AT1G76520_at 10.7528666981947 10.8071652850891 10.8840244019673 11.0038927531979 11.0650367096856 10.7351210714819 9.93411860682353 9.88444144865066 10.4692934520446 9.98092396625702 9.5713547590309 9.56974238839678 10.2084175982106 10.1606157734248 9.31227133027181 10.3001255288408 9.88785949082078 9.76026298073148 9.82897058560504 0.0775273435312056 0.076556701213754 0.0820723302175311 0.0785180345846545 0.0783664916048591 0.0832816676928648 0.0807584449535383 0.0808377111865248 0.0817166266133988 0.0793160439393199 0.0767724560314871 0.0763192783247145 0.0763192783247145 0.0789922557762964 0.0877869077552165 0.0763192783247145 0.0892142376623176 0.0808817397955007 0.0778725545405798 1 1 + 28721389 28722120 28721763.636 28719972 28722310 + gene protein_coding_gene FALSE TRUE AT1G76520.1|AT1G76520.2 auxin efflux carrier family protein similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT1G76530.1); similar to Auxin Efflux Carrier [Medicago truncatula] (GB:ABE88820.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.165319643820391 2.06443192465118 0.0711979245328075 1 2.55444322751119 20.6030303214788 0.165319643820391 0.0620658341925203
AT4G11220_at 9.05123520556659 9.04965472563744 8.91012614994668 8.99069925014113 9.32645653463788 8.79250241557181 8.88174864202628 8.67948020586696 8.1868432722184 7.99086667010061 8.1663147856524 8.46259982403479 8.54832983221669 8.34624935347967 8.36913105723148 8.27245450177747 8.43625469257019 8.41303932105252 8.025202541352 0.123207338125045 0.117514547780712 0.122745157709627 0.127294654909532 0.125393115492643 0.126110612368494 0.120306425232697 0.118649132979782 0.123385819070193 0.119950737842348 0.120047151255119 0.119787613837130 0.117246156408159 0.126942815755309 0.120559689647874 0.117837609367041 0.128628176259607 0.120960528704402 0.118663561098786 4 0|4 /|- 6838448 6838925 6838691 6837907 6839791 - gene protein_coding_gene FALSE TRUE AT4G11220.1 BTI2 (VIRB2-INTERACTING PROTEIN 2) similar to BTI1 (VIRB2-INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT4G23630.1); similar to Os01g0736900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044177.1); similar to putative 24 kDa seed maturation protein-like protein [Solanum tuberosum] (GB:ABC01908.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.199287784622476 2.06422778726481 0.071220907746073 1 2.55415874505681 17.1824549739538 0.199287784622476 0.0997902945079505
AT1G79880_at 5.39201183644377 5.67499004279095 5.49072065129659 5.44351482860123 5.8570265900202 5.7025193262839 5.35189383186086 5.11318949669489 5.62497125670951 5.73966229005656 5.01238479582066 5.2883981754483 4.99259511614911 4.92660196076822 4.60572761928664 5.20807212356633 5.35869043797795 4.88837666349436 5.49018718548006 0.222348053859137 0.224789353821998 0.214023780076864 0.220883997912608 0.214176921300846 0.213223131395985 0.213457448126091 0.217351329901754 0.225672866134892 0.221036782627849 0.218697395915187 0.218689926167863 0.215459253893555 0.220331517734155 0.226507839636900 0.219116512778706 0.220283270787589 0.211515805828711 0.222560438885883 1 0|1 /|- 30051356 30051827 30051656.111 30050921 30053271 - gene protein_coding_gene FALSE TRUE AT1G79880.1|AT1G79880.2|AT1G79880.3 La domain-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G32720.1); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to Os04g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053207.1); similar to hypothetical protein DDBDRAFT_0204655 [Dictyostelium discoideum AX4] (GB:XP_640625.1); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT4G32720.1); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to Laa-A-prov protein [Xenopus laevis] (GB:AAH98983.1); similar to Unknown (protein for IMAGE:6932222) [Xenopus laevis] (GB:AAH84839.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RNA binding [Arabidopsis thaliana] (TAIR:AT4G32720.2); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to RNA binding protein required for maturation of tRNA and snRNA precursors; acts as a molecular chaperone for RNAs transcribed by polymerase III; homologous to human La (SS-B) autoantigen; Lhp1p [Saccharomyces cerevisiae] (GB:NP_010232.1); similar to Os04g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053207.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.171371834374286 -2.06228977129182 0.0714394616228787 1 2.55145833134045 10.8299230449887 -0.171371834374286 0.0699015128421859
AT4G33520_at 6.08466810174445 6.00211723352973 5.86688011001163 5.50827025030882 5.75657606019232 5.83286501435277 6.48630343533856 6.61689696963454 6.10771781256145 6.17383579410681 6.39773438144426 6.38259766838825 6.38980835861607 6.26950182473542 6.70585334940713 6.57240782579769 6.2605618285858 6.14469472997797 6.2435939270639 0.126454788188912 0.12766606169405 0.138208245796248 0.132369210759424 0.128694592918347 0.127547470850138 0.132541116265217 0.129625995151738 0.127970781790328 0.129141296860096 0.128737960363764 0.129774181706591 0.129857133743681 0.126551373694494 0.126737110056963 0.128643847344264 0.129750674415143 0.129979968213997 0.128530474416274 4 4|0 +|/ 16119167 16125749 16122735.8 16118899 16126154 + gene protein_coding_gene FALSE TRUE AT4G33520.1|AT4G33520.2|AT4G33520.3 PAA1 (metal-transporting P-type ATPase 1); ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism|PAA1 (metal-transporting P-type ATPase 1) Encodes a putative metal-transporting P-type ATPase. similar to PAA2 (P-type ATPase of Arabidopsis 2), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT5G21930.2); similar to putative potential copper-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD09318.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121)|Identical to Putative copper-transporting ATPase PAA1 (EC 3.6.3.4) (PAA1) [Arabidopsis Thaliana] (GB:Q9SZC9;GB:O48600;GB:O81870); similar to PAA2 (P-type ATPase of Arabidopsis 2), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT5G21930.2); similar to Na+/K+ ATPase, alpha subunit (ISS) [Ostreococcus tauri] (GB:CAL55853.1); similar to putative potential copper-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD09318.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P type cation/copper-transporter; (InterPro:IPR006403); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type copper-transporter; (InterPro:IPR001756) -0.170501379193541 -2.06220580585206 0.0714489452465296 1 2.55134134994383 12.302044233779 -0.170501379193541 0.0688510443069328
AT1G67700_at 11.188819442753 11.1288145658325 10.7226423323108 10.6531004545184 11.3241663463479 11.0205935415662 11.6092836506822 11.5570577795131 11.5664210823452 11.5257867515881 11.8149756537373 11.8120587990089 11.5888049073533 11.7121160478989 11.8993671286923 11.6636161418716 11.2083421566758 11.6173803149271 11.541204136007 0.0704111729450777 0.0665533808771892 0.0672031214423814 0.0671035215945014 0.0675044796645428 0.0675335368558971 0.0686262080880991 0.0657942141549861 0.0688605702429692 0.068177837587451 0.0658159707147665 0.0657886605639633 0.0685763441940377 0.0680451206326268 0.066100041703732 0.0657886605639633 0.0770008254928157 0.0659595093227607 0.0678353577763662 1 1|0 +|/ 25378083 25379316 25378723.9 25377893 25379696 + gene protein_coding_gene FALSE TRUE AT1G67700.1|AT1G67700.2 similar to At1g67700/F12A21_30 [Medicago truncatula] (GB:ABE84614.1); contains domain OLIGOPEPTIDASE (PTHR11804:SF2); contains domain PROTEASE M3 THIMET OLIGOPEPTIDASE-RELATED (PTHR11804) -0.160378101942759 -2.06158372840142 0.0715192448858323 1 2.55047470571526 22.7550864143992 -0.160378101942759 0.0556258765286924
AT4G38220_at 9.21752967190549 9.51258455126488 9.3765104623445 9.50865493349949 9.53351700686643 9.29184407985441 9.95472714138314 10.0581915688525 9.63549888633592 9.90799405039817 9.53423837881036 9.56920315408749 9.52065892188414 9.65202874387045 9.85515788941706 9.7043842345236 9.60751382135987 9.98731640822052 9.75722832255903 0.100843223115317 0.100444010829023 0.109919220685007 0.103393114239081 0.100444010829023 0.107488110191023 0.104310775395359 0.107157181057408 0.104901165407720 0.103624950871424 0.104087622765335 0.106088521792594 0.101350544918301 0.108497963957080 0.101412027703789 0.103421548631367 0.110121774143164 0.104372808747685 0.103209961814072 4 4 + 17926264 17926710 17926526.889 17925174 17927091 + gene protein_coding_gene FALSE TRUE AT4G38220.1|AT4G38220.2 aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative similar to aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT1G44820.1); similar to ArgE/dapE/ACY1/CPG2/yscS [Medicago truncatula] (GB:ABE89211.1); contains InterPro domain Peptidase M20; (InterPro:IPR002933); contains InterPro domain ArgE/dapE/ACY1/CPG2/yscS; (InterPro:IPR001261); contains InterPro domain Peptidase dimerisation; (InterPro:IPR011650); contains InterPro domain N-acyl-L-amino-acid amidohydrolase; (InterPro:IPR010159) -0.173110502559828 -2.06104109305159 0.0715806216731405 1 2.54971879290818 19.2795548172227 -0.173110502559828 0.0721100810802649
AT4G07450_at 5.53080483720499 5.48067895165863 5.23217363694501 6.75521874247182 3.67001167410124 4.0674337892231 3.97744060985733 5.90367109171015 5.3940731764832 6.55583604817527 5.73064687488379 5.13229616356386 5.23825829681531 5.73685750974438 4.65733915745738 4.95212739245684 5.2720549856252 5.51238370685959 6.77971729866586 0.474606844043177 0.474606844043177 0.474606844043177 0.483040559257923 0.479110402606577 0.497885915590896 0.474606844043177 0.474606844043177 0.522165707979166 0.474606844043177 0.474606844043177 0.502748324711165 0.474606844043177 0.479802693365039 0.474606844043177 0.513304651261462 0.474606844043177 0.474606844043177 0.474606844043177 4 4 - 4229158 4229724 4229394.667 4229152 4231217 - gene protein_coding_gene FALSE TRUE AT4G07450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G30550.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05890.1); similar to hypothetical protein 31.t00031 [Brassica oleracea] (GB:ABD65118.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.628076371052396 -2.06100532706994 0.0715846689097688 1 2.5496689713298 10.8382813426635 -0.628076371052396 0.430571939322292
AT4G33060_at 6.416008541436 6.3646442545439 5.92733033067051 5.84678083005408 6.51518983908273 6.14866028982283 6.14176601980203 6.21794358683685 6.11444606458853 6.0681276437678 6.21127042864011 5.97237871749157 5.74636558082296 5.66562509211258 6.14680084120803 5.67846460268176 6.41340102619973 6.07273599272827 6.26847808028959 0.193140026266108 0.183098277211699 0.194071909619418 0.185558116984484 0.197906789691021 0.186787563279676 0.190357215260122 0.188460243601328 0.202849716000257 0.187972709490286 0.194664443725440 0.190376043871715 0.194594632425007 0.196456375933541 0.196228169162209 0.185190577227740 0.188531295068305 0.184669903065762 0.183098277211699 4 4|0 +|/ 15950248 15951583 15951102.143 15948493 15952226 + gene protein_coding_gene FALSE TRUE AT4G33060.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G44600.1); similar to peptidyl prolyl cis trans isomerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53160.1); similar to Os01g0582400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043413.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.168785294613419 -2.06092773035773 0.071593450425304 1 2.54956088084637 12.2666559022566 -0.168785294613419 0.0668612643312402
AT4G33300_at 10.8138109738025 11.0186507264625 11.1018627837286 11.1084429225344 10.7936580037591 10.6834131144801 9.74833835050724 9.82521895717604 10.3458763430805 9.82570123866045 9.81163363072542 9.47935791396313 9.63049781366478 9.9560410304081 9.14331387751657 9.5015881555246 9.91476459900614 9.8922272985055 9.62686526456436 0.0830729833377981 0.083034970395651 0.0828431092912576 0.0824191207465148 0.0846622761563822 0.0861709709429304 0.0836694647217933 0.0824130561701729 0.0914365135225418 0.0813185338182067 0.0831737289003953 0.0855286083472342 0.0837863064311376 0.085288254633187 0.0829876741878555 0.082984710349985 0.0877494334704879 0.0893385713074374 0.0818035940339706 4 4 - 16051170 16051650 16051432.455 16050460 16056530 - gene protein_coding_gene FALSE TRUE AT4G33300.1|AT4G33300.2 ADR1-L1 (ADR1-LIKE 1); ATP binding / protein binding Identical to Probable disease resistance protein At4g33300 [Arabidopsis Thaliana] (GB:Q9SZA7;GB:Q56WJ3); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G04720.1); similar to ADR1 (ACTIVATED DISEASE RESISTANCE 1) [Arabidopsis thaliana] (TAIR:AT1G33560.1); similar to ADR1-L3 (ADR1-LIKE 3), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G47280.1); similar to Probable disease resistance protein At4g33300 (GB:Q9SZA7); similar to Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABE81238.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99732.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) 0.151851605975503 2.05978147034717 0.0717232927830857 1 2.54796429319976 20.4361706400643 0.151851605975503 0.0424132888898255
AT3G44260_at 4.70840431579645 4.69383815785311 4.56483776742014 4.57180894261033 4.19997139787824 4.57723316214086 4.46384820529105 4.54266656667252 5.45361720581064 4.84283586236117 5.54830027058719 5.64453044970435 5.16364325010267 5.53060068002592 5.59446157232856 4.92958563782262 5.50966513882965 5.21405306498804 4.49746390657162 0.204468252452290 0.200478538573079 0.211605475620277 0.219571994761505 0.208386039071832 0.209344092074396 0.206047067107242 0.204416450151189 0.210908122290265 0.208594730157147 0.204771292322621 0.200459186851833 0.202855689009125 0.205381002905365 0.217286949469299 0.202501985966193 0.203785385515816 0.202669306247971 0.203736717896827 3 3 - 15963279 15963755 15963554.091 15963032 15964071 - gene protein_coding_gene FALSE TRUE AT3G44260.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT5G22250.1); similar to CCR4 associated factor 1-related protein [Capsicum annuum] (GB:ABG66307.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.168411427954961 2.05739956620548 0.0719938324329642 1 2.54464737987238 9.70190639760606 0.168411427954961 0.0667550471274007
AT4G29220_at 8.56413516002505 8.5179949775551 8.53459987484551 8.65814293967436 8.79108591924378 8.58694319808533 8.52536862313757 8.5252635610829 8.39968355418833 8.46915340143438 8.55313788615644 8.65176155872399 8.66260758292251 8.45042484153087 8.4708644797452 8.74977129500275 8.6852557859248 8.66173886559754 8.38317556018453 0.128295261412714 0.123246633037718 0.130415695542944 0.135613113944582 0.123246633037718 0.123246633037718 0.134842866568162 0.132770393805039 0.132841545133909 0.128429829689148 0.126128145339817 0.126934690245526 0.125527890381795 0.132067233508407 0.134863272752034 0.123746841513381 0.134660975611490 0.126898938660782 0.127850701960565 4 4|0 -|/ 14403699 14404468 14404148.1 14403353 14406598 - gene protein_coding_gene FALSE TRUE AT4G29220.1 phosphofructokinase family protein similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G32840.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT5G56630.1); similar to phosphofructokinase family protein [Arabidopsis thaliana] (TAIR:AT4G26270.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE84859.1); similar to Phosphofructokinase, putative [Medicago truncatula] (GB:ABE90419.1); similar to Phosphofructokinase [Medicago truncatula] (GB:ABE80791.1); contains InterPro domain Pyrophosphate-dependent phosphofructokinase TP0108; (InterPro:IPR012004); contains InterPro domain Phosphofructokinase; (InterPro:IPR000023) 0.151430092096761 2.05676730624595 0.0720658111607326 1 2.54376710155740 17.101958177816 0.151430092096761 0.0420583600573874
AT4G16130_at 7.88717237301563 8.2988226989672 8.2963013988895 8.39993748174235 8.40952978738981 8.19528086698812 7.42155708453054 7.64799786753936 8.36337082597037 7.916025144817 8.10526149746371 7.66823886134353 7.81578374294823 8.2426224161343 7.63679881409531 7.93624502757314 7.7122500861835 8.23380519887047 7.87181646630834 0.136248682035518 0.137574093387068 0.132120982679451 0.132927023471959 0.131830760174148 0.134363777735912 0.127096847685346 0.130891423594104 0.134094997470964 0.133179128705289 0.127096847685346 0.127096847685346 0.139265788117287 0.129999777440938 0.137049226321386 0.129240722540658 0.144729991129177 0.127096847685346 0.135370386581886 4 4|0 +|/ 9126713 9127623 9127273.111 9120879 9127950 + gene protein_coding_gene FALSE TRUE AT4G16130.1 ARA1 (ARABINOSE SENSITIVE 1); ATP binding / galactokinase Similar to galactokinase. similar to galactokinase, putative [Arabidopsis thaliana] (TAIR:AT3G42850.1); similar to Os06g0702500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058491.1); similar to arabinose kinase-like protein [Nannochloris bacillaris] (GB:BAD42339.1); similar to Os02g0141300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045858.1); contains InterPro domain Galactokinase, glycosyltransferase N-terminal; (InterPro:IPR012369); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Galactokinase; (InterPro:IPR000705); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.189923218808606 2.05587024594332 0.0721680553093109 1 2.54251827409031 16.0542148705204 0.189923218808606 0.0911415772990528
AT1G67310_at 7.35600415454337 7.80720972379762 7.53951424209713 7.60848575587327 8.385493506237 7.76810118212865 7.00115346340763 6.37358660075402 6.93391455797852 6.68325068577163 6.45098248393048 6.78469477729627 6.86440095287135 6.65815851402402 5.81059027497654 7.34291376953398 6.83384426503672 6.78790355733415 6.84857713964453 0.192233528327742 0.190602927051287 0.200561067566805 0.190663862094066 0.193701778100763 0.195334745426580 0.193527566726247 0.199770639021770 0.210470194695495 0.19725192399567 0.203586178701054 0.192912904923715 0.197645740429544 0.196338063418836 0.207466363963457 0.190602927051287 0.213474121018290 0.198659772034468 0.199876796123503 1 1|0 -|/ 25201845 25202616 25202259 25201845 25206789 - gene protein_coding_gene FALSE TRUE AT1G67310.1 calmodulin binding / transcription regulator Identical to Calmodulin-binding transcription activator 4 (Signal-responsive protein 5) (Ethylene-induced calmodulin-binding protein d) (EICBP.d) (Ethylene-induced calmodulin-binding protein 4) (EICBP4) (AtFIN21) (CMTA4) [Arabidopsis Thaliana] (GB:Q9FYG2); similar to calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G64220.2); similar to anther ethylene-upregulated protein ER1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94398.1); similar to OSJNBa0053B21.7 [Oryza sativa (japonica cultivar-group)] (GB:CAE05533.2); similar to Os04g0388500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052630.1); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.280341066267779 2.05538978749073 0.0722228742265148 1 2.54184947237149 14.2367436796917 0.280341066267779 0.171608545890401
AT1G11480_at 7.58885627392058 7.60799541084983 7.46170017503464 7.51626388827607 7.8582507661514 7.72573373689768 7.19338481367788 7.52168763589673 7.29732155724819 7.3553444234935 6.67947899804113 6.71089045645257 6.72695629509932 6.77912168298582 6.82023540955568 6.97956410225418 6.85409763701048 6.60141289831102 7.12929407015107 0.180870972776083 0.176965451800873 0.186907264473412 0.186228772621596 0.17757296889241 0.185397060790949 0.174283627376861 0.177549522078440 0.188374021227710 0.187856562681622 0.187464742761975 0.173439338668525 0.186426735229914 0.177945921431731 0.177196828853143 0.173234073962108 0.190425349688723 0.175575521436555 0.180358523339553 1 1|0 -|/ 3864401 3865111 3864657.5 3864153 3866969 - gene protein_coding_gene FALSE TRUE AT1G11480.1|AT1G11480.2 eukaryotic translation initiation factor-related similar to Os07g0546100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059920.1) -0.164588778665064 -2.05517244634314 0.0722476854656679 1 2.54154694575828 14.5740456052188 -0.164588778665064 0.0620798509664014
AT4G02640_at 7.9157172317701 8.30802649038791 7.94890555307288 8.0812450100245 8.21334525621 8.03473979679254 7.74893371272926 7.91091439961641 7.39576048146373 7.31086454180233 6.54787782638518 6.80068882768811 7.08208112608798 6.96056039288756 6.44158542741095 7.55083975350378 6.8842079125829 7.07322230941008 7.43457453896396 0.207228854957267 0.203593407299513 0.208530994341472 0.207760506739924 0.204665477565400 0.208812598551508 0.205546512196712 0.208006450616485 0.208193775987799 0.203777512567333 0.203913444134932 0.204231518205537 0.202414603745253 0.203350340317920 0.205224409177004 0.19984521000667 0.214697315586153 0.206922636426215 0.209663147757814 4 4|0 +|/ 1155396 1155908 1155734.9 1153997 1156320 + gene protein_coding_gene FALSE TRUE AT4G02640.1|AT4G02640.2 BZO2H1 (basic leucine zipper O2 homolog 1); DNA binding / sequence-specific DNA binding / transcription factor|BZO2H1 (basic leucine zipper O2 homolog 1); DNA binding / transcription factor Encodes bZIP protein BZO2H1. similar to BZO2H4 (basic leucine zipper O2 homolog 4), transcription factor [Arabidopsis thaliana] (TAIR:AT3G54620.1); similar to bZIP transcription factor bZIP89 [Glycine max] (GB:ABI34655.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.182052980841523 -2.05447184294579 0.0723277211724095 1 2.54057180424414 15.1692448318611 -0.182052980841523 0.0829143053819828
AT3G45240_at 6.44185475820372 5.77028666426948 6.82253239989488 6.23905540594067 6.3124277302142 5.67886506287341 6.20236155634923 5.74307409245322 5.2833491237364 5.35058530442279 5.83793818301522 6.06261155611299 5.4425022907772 5.8160674209147 5.60444724578908 6.00603888145318 5.75201486526381 5.43767256173146 5.33951451860549 0.203454110242883 0.205259011922 0.208179258764479 0.212134354999335 0.210392906068429 0.222915212923463 0.204701426485563 0.200683110486514 0.200018763176215 0.209536364224138 0.203578025620476 0.200798802708060 0.199444314213399 0.210204561478703 0.201676463654472 0.199263608827861 0.207551608669651 0.214338852024141 0.208364582366922 3 3|0 -|/ 16581809 16582698 16582179.222 16581463 16584725 - gene protein_coding_gene FALSE TRUE AT3G45240.1|AT3G45240.2 GRIK1 (GEMINIVIRUS REP INTERACTING KINASE 1); kinase similar to GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT5G60550.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79890.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.322127262644595 2.05383085515388 0.0724010216940777 1 2.53967971810015 11.6860045127184 0.322127262644595 0.205038429800174
AT4G02150_at 5.65440228540749 6.11933619658515 5.50718903533581 5.76857714701404 6.0365011185882 5.98268610062237 5.01117079869336 5.60248701220284 4.77451007298438 4.80618438469912 4.943886590578 5.64039285452047 4.61514823692206 4.99701157362652 5.32459333979434 5.13540986035052 4.84554140583019 5.62910690472865 5.08601992737619 0.244131549659261 0.242762964851777 0.254997216128448 0.245419458355962 0.239201953507231 0.246037630861931 0.238870097169037 0.241282798569923 0.251089420033249 0.253522770669817 0.244429721132649 0.240415593528211 0.250262011147681 0.247928016501313 0.245626791275782 0.238630271215136 0.2601006833363 0.246538987588294 0.243667404069432 4 4 - 950888 951427 951103.636 950611 953690 - gene protein_coding_gene FALSE TRUE AT4G02150.1 ATIMPALPHA3/MOS6; protein transporter Encodes IMPORTIN ALPHA 3. Mutant plants act as suppressors of snc1 response and salicylic acid accumulation. Located in the nucleus. Involved in protein import. Identical to Importin alpha-2 subunit (Karyopherin alpha-2 subunit) (KAP alpha) (KAP2) [Arabidopsis Thaliana] (GB:O04294;GB:O04255;GB:Q94F55); similar to importin alpha-1 subunit, putative (IMPA4) [Arabidopsis thaliana] (TAIR:AT1G09270.2); similar to importin alpha-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G02690.1); similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to Importin subunit alpha (Karyopherin subunit alpha) (KAP alpha) (GB:O22478); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.23968541397092 2.05047946943853 0.0727854438194644 1 2.53501670263515 10.7254392822130 0.23968541397092 0.138123014530287
AT4G18810_at 8.45916084883025 8.59406461531172 8.12802392167419 8.2635115245863 8.8601838135762 8.23791316181891 9.38143006792184 9.34125424050723 8.02731704494318 8.81396048718865 8.36734555864907 8.196200711529 8.53820222941536 8.90061300727984 8.31202490625541 8.57349952804474 8.71313779441194 8.74072078277374 8.34104130554612 0.153660690188422 0.151219231126977 0.165371820389081 0.162505502716918 0.149908826733500 0.156765765393764 0.156468519287183 0.155874074524369 0.163013303728901 0.155281173669615 0.160563536820461 0.161075798783083 0.153149740456295 0.155493888065914 0.154147563286854 0.151551070509770 0.156243451854989 0.157576523774507 0.158796301318545 4 4|0 -|/ 10322721 10323451 10323103.444 10322449 10325781 - gene protein_coding_gene FALSE TRUE AT4G18810.1 transcriptional repressor similar to oxidoreductase/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT1G16720.1); similar to Os02g0234500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046381.1); similar to UOS1 [Pisum sativum] (GB:AAM19355.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.211478776079978 -2.04969095312853 0.0728761776070747 1 2.53391988644656 17.1266049462888 -0.211478776079978 0.112869692864547
AT1G08700_at 7.05677384893146 7.4638141542274 7.17800262723512 7.33129070428069 6.9264226494565 6.71125371760049 6.54590681292837 7.11721770048712 7.6875775862039 7.53358401400182 7.5148586501081 7.705757176797 7.07223747459215 7.36174657926606 6.97069912777868 7.4848578996174 6.75807661215906 7.01064538596389 7.83566776778434 0.170731749353598 0.155697745215251 0.166231578840445 0.163981127973286 0.164906181005691 0.171806934335046 0.17392427270671 0.155697745215251 0.177812684651044 0.162305766036333 0.155697745215251 0.170441665438733 0.166627607268194 0.160664037952240 0.171915559774813 0.162305398914542 0.190264162682351 0.162762781719001 0.162300907167951 1 1 - 2769909 2770323 2770087.545 2769818 2771480 - gene protein_coding_gene FALSE TRUE AT1G08700.1 presenilin family protein Identical to Presenilin-like protein At1g08700 [Arabidopsis Thaliana] (GB:O64668;GB:Q8L9V0); similar to presenilin family protein [Arabidopsis thaliana] (TAIR:AT2G29900.1); similar to putative presenilin [Oryza sativa (japonica cultivar-group)] (GB:BAD81114.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22A, presenilin; (InterPro:IPR001108) -0.229967815272557 -2.04938268315778 0.0729116796798586 1 2.53349111812897 14.5015701032010 -0.229967815272557 0.129718622852443
AFFX-Athal-GAPDH_3_s_at 11.4701305001326 11.6531324975917 11.8687937130421 11.6526522219928 11.5155296767346 10.9827843011892 11.5493815769480 11.5689658853008 11.7256431252533 11.5192042957983 12.2389223216306 12.3950102980137 11.9429046098122 12.1357213540445 12.1963264486701 11.9665846910013 11.4435875443446 11.786973325843 11.4134573984320 0.0829991587583049 0.0839886630455154 0.0803951019191842 0.0828104507111347 0.0802183427143874 0.0964208087764136 0.0797565430933506 0.0817225818586416 0.085807660370552 0.0797565430933506 0.0814607970618136 0.0797565430933506 0.082341583020685 0.0837274377329239 0.0822696129479391 0.0801619489131075 0.0803800144645772 0.0842971621965151 0.0801208255052357 NA NA NA NA NA FALSE FALSE 0.202511457127584 2.04823376450518 0.0730441429807131 1 2.53189325876777 23.3156823452821 0.202511457127584 0.104466559623373
AT4G28980_at 6.43692456497135 7.06330285865049 6.65518561214562 6.73605636480643 7.31147109746652 7.40877860223432 6.58599415900924 7.11773403299369 6.51701287989656 6.60957854024395 6.79694237969692 7.0859103888227 7.14047426061405 6.61358174478582 6.65944449644581 6.96404809999643 6.79980390730552 6.3964798866675 6.49965644670402 0.193302305464596 0.182627625092596 0.187499291785855 0.181330838380002 0.187712418576477 0.185301041764387 0.184542128175364 0.180209084743258 0.180645259840042 0.180063306528956 0.179115773426004 0.181927466816791 0.180338322519869 0.191811210464817 0.179595711649287 0.181873182164183 0.181958097152790 0.189561811499292 0.182630639466810 4 4 + 14289532 14289955 14289731.455 14288445 14290712 + gene protein_coding_gene FALSE TRUE AT4G28980.1|AT4G28980.2 CAK1AT (CDK-ACTIVATING KINASE 1AT); kinase/ protein serine/threonine kinase|CAK1AT (CDK-ACTIVATING KINASE 1AT); kinase Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription. similar to CDC2/CDC2A/CDC2AAT/CDK2/CDKA,1 (CELL DIVISION CONTROL 2), cyclin-dependent protein kinase/ kinase/ protein binding [Arabidopsis thaliana] (TAIR:AT3G48750.1); similar to CDK-activating kinase [Euphorbia esula] (GB:AAF34804.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.245943519258679 2.04704663376989 0.073181256490408 1 2.53024251357909 13.5890150454464 0.245943519258679 0.143865150702011
AT2G38730_at 5.83501777567813 5.99969998891962 5.8400637089456 5.9689038303614 5.85108426193964 6.01334917057895 6.61754160018618 6.53507687642341 5.47931571721911 5.46864034057605 6.04419669721174 6.24608805147539 6.26876097611529 6.10827252935959 6.3081970426526 5.47572473808326 5.71107214368183 5.83607889386621 5.14089638645688 0.235198051130358 0.231665633233014 0.238804409113560 0.226648361017644 0.230782346241997 0.233833821862947 0.237931071807689 0.229987522577496 0.232487195889667 0.233191439625160 0.235430370359713 0.226591694935248 0.230434240228150 0.232289981583354 0.227096845306723 0.226591694935248 0.231140283657148 0.231939520193694 0.234110913311602 2 2 - 16199696 16201085 16200692.364 16199434 16201181 - gene protein_coding_gene FALSE TRUE AT2G38730.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamase [Arabidopsis thaliana] (TAIR:AT2G21130.1); similar to Peptidyl-prolyl cis-trans isomerase, cyclophilin type [Medicago truncatula] (GB:ABE85500.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.154182125979812 2.04680696587884 0.0732089683088336 1 2.52990927915011 11.7639670010323 0.154182125979812 0.0479740300862708
AT4G23890_at 11.0092001258359 11.2589353521759 10.9359993313409 11.1543722343607 11.2049544614517 11.0529851225415 11.6192716112821 11.6937554124563 11.2648769880308 11.7030241600786 11.3872857586445 11.5883700556765 11.4972041678475 11.5058470420859 11.2606063205276 11.7962786726520 11.4937859807036 11.5524399149304 11.6319325991962 0.0828080571328116 0.075777690038555 0.079991032785513 0.0775207358939 0.0766155961915574 0.0792955591764828 0.0796260667669364 0.0785602230788993 0.084501061823411 0.076122904954411 0.0845634077260875 0.075777690038555 0.075777690038555 0.0815155644889993 0.0805959683504593 0.0759899818448627 0.0835317100511998 0.0782064816258217 0.075777690038555 4 4 - 12420624 12420980 12420788 12420424 12421474 - gene protein_coding_gene FALSE TRUE AT4G23890.1 similar to Os07g0196200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059119.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28447.1) -0.165631757324454 -2.04555476538742 0.0733539202903238 1 2.52816839279303 22.7629367838816 -0.165631757324454 0.0644490802221135
AT1G24350_at 5.23412850213116 5.58095081023847 5.79705369584442 5.54486515856465 6.93237714559206 5.71294695169027 5.99410642666304 5.76212163686715 4.55785076070075 4.94010257840742 5.60038074170102 4.91030612244955 5.15168277587721 5.14839447584661 4.78938326395465 5.29554593721400 5.49428360410422 5.12068306532209 5.03505582348843 0.208871767863795 0.198283051343314 0.201252794417299 0.196837799477203 0.206251733324227 0.202430843716194 0.192421351891021 0.192669662348726 0.215319642666011 0.195374510265303 0.210817483252792 0.192154856588802 0.194780943561173 0.203180257890007 0.197808512116694 0.194646208919471 0.227039753320237 0.215383874629566 0.204539817022346 1 1|0 -|/ 8639112 8640239 8639846.8 8638509 8640476 - gene protein_coding_gene FALSE TRUE AT1G24350.1|AT1G24350.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os08g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060903.1); similar to Acid phosphatase/vanadium-dependent haloperoxidase related [Medicago truncatula] (GB:ABD32415.1); similar to Os01g0901800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045113.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67600.1); similar to Os08g0127500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060903.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82772.1); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase related; (InterPro:IPR003832) 0.349240002362183 2.04459808117857 0.0734648509892624 1 2.52683854881583 10.8364032338693 0.349240002362183 0.227269713406678
AT1G54150_at 6.56403042596987 7.36461066079148 6.65354698684664 6.4612207808939 6.62401324083549 6.42542742815228 5.62760807480415 6.04578118529784 6.59735110600026 5.4801888595687 5.41633731224658 5.38827542443324 5.3725593258481 5.22101427131979 4.89935131274836 5.31542450301408 5.18636608279581 5.05581211714823 5.65286588083427 0.234757165242393 0.234587870031571 0.238046228542016 0.234540340244841 0.233252152395022 0.242449737747398 0.24440473439576 0.22977323445379 0.247036038229079 0.236827147628592 0.229606078609613 0.228531499598566 0.228100195723025 0.232073551702174 0.228100195723025 0.2391579233614 0.245587480701395 0.239952915567415 0.231698313836918 1 1|0 +|/ 20220037 20220915 20220537.889 20219099 20221151 + gene protein_coding_gene FALSE TRUE AT1G54150.1 zinc finger (C3HC4-type RING finger) family protein similar to ZCF61, protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G59560.1); similar to C3HC4 zinc finger containing protein [Medicago truncatula] (GB:CAJ00009.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.268849107986946 -2.04382573536276 0.0735545253953678 1 2.52576507042320 12.0417937608633 -0.268849107986946 0.163463221430880
AT4G03180_at 4.73102430974715 5.18812569002138 5.33216310397063 5.24549309486486 5.36971544893194 5.47863006801628 5.00198778889956 5.20801997106842 4.90694398504068 4.64146147246987 5.18972501284427 4.95688834041855 4.68945345262727 4.75530816890766 4.99130513228109 4.68819787507334 4.7866125630136 4.75259632366629 4.85228833805905 0.217420059213444 0.221291554404243 0.223905846814837 0.219638873157716 0.21796853535375 0.217726938552343 0.212576828939435 0.2195391018747 0.220555092588646 0.217977681747586 0.217645361375751 0.215081391038056 0.221965576507486 0.219274375078915 0.223833316021021 0.213850216101432 0.21693389585965 0.230855442272955 0.212646493519188 4 4|0 +|/ 1403319 1404637 1403978.9 1403117 1404937 + gene protein_coding_gene FALSE TRUE AT4G03180.1 similar to hypothetical protein DDBDRAFT_0185878 [Dictyostelium discoideum AX4] (GB:XP_638709.1); similar to Os12g0538100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066939.1) 0.187620291212970 2.0422518222937 0.0737375947829302 1 2.52357784548508 10.0201409963370 0.187620291212970 0.0900491430019103
AT3G26640_at 5.92613818124118 6.0345592222238 5.7057969451637 5.7600540053736 5.96068426506967 5.89887617300828 5.5033931948016 5.6131417252129 5.39652684855491 4.85298744081276 5.11772337360146 5.3797999150504 5.23415005316528 5.31962768179376 5.30955964394275 5.6298554453052 5.17326279863208 5.52531707751367 5.07795266577514 0.242739462620692 0.236030493468998 0.234618132163141 0.225789485523235 0.221723285391527 0.242763621428035 0.223143355449706 0.229299473483669 0.235213630762764 0.221723285391527 0.227517556518012 0.227555943066707 0.223852406021549 0.228777080929974 0.228352335686577 0.221723285391527 0.242769178917413 0.224065805501615 0.221723285391527 3 3 + 9795008 9795526 9795359.091 9794459 9795694 + gene protein_coding_gene FALSE TRUE AT3G26640.1 transducin family protein / WD-40 repeat family protein similar to ATAN11 (ANTHOCYANIN11), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G12910.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.144525556597623 2.04100774358530 0.0738826112365501 1 2.52184931236865 11.0229892891818 0.144525556597623 0.0302543559683963
AT4G38840_at 10.2202714669444 10.5748980382601 10.4917569191775 10.7893706344134 11.4108768224851 11.1298414475822 11.0888266651856 11.2526479191154 11.0076872715346 11.1652309026877 11.4116354251423 11.3759310904837 11.5472608628099 11.3218784835137 11.3299294886678 11.5862907123032 11.5167835023579 11.2584791733593 11.4257826060421 0.0896407740148534 0.0866063649449579 0.0891620763392183 0.088207699913401 0.0921416108006956 0.0906433240422834 0.0866063649449579 0.0925121770801385 0.101556539219937 0.0866063649449579 0.089680639855848 0.0877140332044768 0.0888335732758905 0.0924589382425115 0.0885724137349743 0.0874614389906362 0.0893063014133174 0.0922927528199295 0.0866063649449579 4 4 - 18125174 18125430 18125317.091 18124972 18125553 - gene protein_coding_gene FALSE TRUE AT4G38840.1 auxin-responsive protein, putative similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G21210.1); similar to auxin-induced SAUR-like protein [Capsicum annuum] (GB:AAM12778.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.195128549556561 2.04053757269798 0.0739374886282321 1 2.52119612910255 22.1788564986877 0.195128549556561 0.097917780910831
AT2G46260_at 7.22716018060507 7.44088441406783 6.65682863066992 6.79428965851301 7.7567303597347 7.11339821415158 6.66733597922673 6.76256530749367 7.25462358358025 6.93485918849433 6.86301382004233 6.64641748192337 6.30200917063829 6.76818779840566 6.37858251533141 7.15096463293429 6.59444490118586 6.56229934134384 7.26644349937296 0.171729798742923 0.163271760305849 0.161410490476665 0.166584826760337 0.168052616910359 0.182319522811747 0.167236045815821 0.164325879578399 0.168086419000244 0.161410490476665 0.165217982005981 0.165319319760056 0.165601841783989 0.161479117882686 0.16555167517651 0.161410490476665 0.178889025178082 0.164005659301162 0.168111391698805 2 2 + 19005027 19005495 19005238.636 19003041 19005706 + gene protein_coding_gene FALSE TRUE AT2G46260.1 BTB/POZ domain-containing protein similar to ATPOB1 (Arabidopsis thaliana POZ/BTB containing-protein 1), protein binding [Arabidopsis thaliana] (TAIR:AT3G61600.1); similar to putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61652.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAT40121.1); similar to Os06g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057726.1); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.218955110335617 -2.03898964873115 0.0741184377264025 1 2.51904597638605 13.9575067838286 -0.218955110335617 0.120831130563058
AT2G23940_at 7.80899318743048 7.88306733014647 7.5988168599293 7.70588465222425 7.98470828344330 7.60703884881792 7.95317925102932 7.72284796243018 6.67324961914513 6.73257111724336 7.47893786327003 7.41604509454631 6.81910609399358 7.06120782522146 7.18315150604728 7.11992780022769 6.89670802429237 7.17980764182614 6.60627283136496 0.167971115075018 0.16984817757976 0.177548870183814 0.170520740883945 0.167248474866231 0.171076640758686 0.171118486393460 0.1752829820584 0.198619655244983 0.20062768311464 0.173697729561908 0.168535492939951 0.168207098574106 0.191132941193251 0.181093618000543 0.172992531792417 0.178007741859513 0.192064682294846 0.178048970956018 2 0|2 /|+ 10191486 10191958 10191682.333 10191046 10192411 + gene protein_coding_gene FALSE TRUE AT2G23940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30500.1); similar to Protein of unknown function DUF788 [Medicago truncatula] (GB:ABE94694.1); contains InterPro domain Protein of unknown function DUF788; (InterPro:IPR008506) 0.177876926802436 2.03892094332504 0.0741264791593446 1 2.51895055125895 14.6905967154794 0.177876926802436 0.079800006264461
AT1G70810_at 10.5913047393813 10.7369023597270 11.1460595769552 11.1037570068278 10.8488106305959 10.5171506993520 10.3338054155831 10.2834349945331 8.9427765113052 9.6737389586712 9.12924705358194 8.4848832002453 9.29041138320567 9.25135208495372 8.27795013371787 9.3510429137199 9.66583652388473 8.95833779186405 8.80273336250053 0.150997540881570 0.144061749896087 0.150033272977932 0.151929159746967 0.147996325249135 0.149950404653633 0.144345013705850 0.147066727627651 0.157714115746568 0.142531432875455 0.151815292245163 0.154502264631644 0.147545990081158 0.145944097174487 0.159575037686527 0.146035636512308 0.150001603978312 0.149368150980896 0.151426665443361 1 1 + 26707875 26708729 26708337.273 26707792 26708898 + gene protein_coding_gene FALSE TRUE AT1G70810.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G70800.1); similar to C2 [Medicago truncatula] (GB:ABE81436.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.164482812973813 2.03841286970899 0.0741859714018742 1 2.51824491419975 19.7905943011056 0.164482812973813 0.0637075457839835
AT4G16280_at 4.92123923383873 4.72623769105449 5.24918281344045 4.93847298789903 5.44909731925276 5.21684531744437 4.49218201350715 4.67608204639703 4.90171099156663 4.56737565781833 4.56554606623517 4.80148701555669 4.82103139740345 4.5512116527553 4.60263057019193 4.93698117523415 4.66177666193762 4.67281626372484 5.0880888397498 0.238760404577988 0.231153280996188 0.239591340799101 0.240156650959141 0.236492624018419 0.241833880982062 0.239093024981415 0.234487631057384 0.248801171595592 0.238839651762523 0.235104380515502 0.231153280996188 0.248161757768953 0.233893222867228 0.244626651468211 0.231966205111288 0.239214178955835 0.241001380749631 0.235800233577644 4 4|0 -|/ 9207381 9208618 9208239.5 9206613 9214841 - gene protein_coding_gene FALSE TRUE AT4G16280.1|AT4G16280.2|AT4G16280.3 FCA (FCA); RNA binding Involved in the promotion of the transition of the vegetative meristem to reproductive development. Four forms of the protein (alpha, beta, delta and gamma) are produced by alternative splicing. Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|Identical to Flowering time control protein FCA (FCA) [Arabidopsis Thaliana] (GB:O04425;GB:O04424;GB:O04727); similar to flowering time control protein-related / FCA gamma-related [Arabidopsis thaliana] (TAIR:AT2G47310.1); similar to FCA gamma [Brassica napus] (GB:AAL61622.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.179378816989055 2.03772052429860 0.074267115013024 1 2.51728343047381 9.73570589289999 0.179378816989055 0.0815978728515517
AT2G30350_at 5.64104173891823 6.11396809839062 5.1460665744856 5.85724689360048 6.01163942647531 6.28966403872584 5.34402008919875 5.55813994574378 4.35021690018857 4.12635386297308 4.41289635586049 4.97884765580305 4.74682652377425 4.75269080809534 4.56712892032296 4.81285842584922 5.09461127636999 4.45738034053474 4.61165932816448 0.236342756577044 0.226023816181883 0.228381087714124 0.229749105096586 0.225475518163931 0.232626559877465 0.224901522321198 0.226929680679673 0.236124390220555 0.228143066553259 0.232542720256049 0.233200903345758 0.226891475757622 0.244633101636867 0.224901522321198 0.230882183433764 0.247388552005831 0.224901522321198 0.224901522321198 2 2 - 12941325 12941886 12941630.364 12941227 12942850 - gene protein_coding_gene FALSE TRUE AT2G30350.1|AT2G30350.2 endo/excinuclease amino terminal domain-containing protein similar to Os07g0230500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059231.1); contains domain SUBFAMILY NOT NAMED (PTHR20208:SF5); contains domain FAMILY NOT NAMED (PTHR20208)|similar to PREDICTED: similar to GIY-YIG domain containing 2 isoform 1 isoform 1 [Canis familiaris] (GB:XP_849594.1); similar to Os07g0230500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059231.1); contains InterPro domain Excinuclease ABC, C subunit, N-terminal; (InterPro:IPR000305) 0.263511719904920 2.0368020193588 0.0743748971483475 1 2.51600801188035 10.2905475517431 0.263511719904920 0.159790638873435
AT1G54110_at 6.41033239620235 5.93981565103039 6.3878590133326 5.93684869483562 6.15016833331415 5.92199789451219 6.98077994118555 6.64374820862458 6.13857513360133 6.30296063752025 5.96257236967147 6.0438282243124 5.97982349972129 6.61069617126436 6.07223372243653 6.48040674362628 6.40498122174395 6.07595432235458 6.37835563953705 0.1785300306648 0.169492213135868 0.181114870081017 0.176938649264248 0.173505690205112 0.183917729990304 0.170810725930473 0.189437768307942 0.177023665928522 0.172123446177295 0.179346368347629 0.171461979141605 0.174755173041672 0.174888212369648 0.174772870948958 0.172223686173743 0.173382412920148 0.182610607685050 0.173840352431407 1 0|1 /|+ 20204486 20205264 20204871.25 20203086 20205363 + gene protein_coding_gene FALSE TRUE AT1G54110.1 cation exchanger, putative (CAX10) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55600.1); similar to Os09g0272500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062740.1); similar to Os08g0533700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062347.1); similar to cation exchanger-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13159.1); contains domain no description (G3D.1.20.5.110) -0.231967833878467 -2.03454291020377 0.0746406361896673 1 2.51287173963345 12.5349983522685 -0.231967833878467 0.132976317664614
AT4G38750_at 7.06917315642613 7.22610907767601 6.48387026719505 6.66356169391198 7.18847577514928 6.98053449796248 7.53722481920577 7.33879901720666 6.73725048100621 6.84514308074389 6.88791961840528 7.3182301918543 6.78167807199412 7.17778941080012 6.7388999655072 7.18079813745355 6.86467829409275 7.11487198824465 7.03929760095286 0.204920138700814 0.197279318487103 0.204929359764178 0.199356691115911 0.199852065117531 0.223789512306791 0.202424114889351 0.21386921451949 0.219876136937567 0.206076682385879 0.199845856610066 0.202199266255058 0.202310053753765 0.211286046872063 0.206721266464421 0.197279318487103 0.214512220363027 0.204369372222607 0.199936248852714 4 4|0 -|/ 18085038 18085834 18085526.1 18084902 18090840 - gene protein_coding_gene FALSE TRUE AT4G38750.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM46049.1) -0.164752401757134 -2.03285299256886 0.0748400207265306 1 2.51052630169962 14.0019711701058 -0.164752401757134 0.0646424069383868
AT1G80680_at 7.63399411114318 8.001235846531 7.60679448353855 7.68179053368829 8.02006705238369 8.01923200598889 7.2042942784536 7.36909850087295 6.6924775266344 6.91329373868121 7.01499025730554 7.13943947066808 7.05741729038367 6.40593800653073 6.9367273700736 7.03132412038193 6.92776584885844 6.97091212126578 7.02260895627123 0.180157046955068 0.177467245907705 0.183016402200693 0.176665700253467 0.176665700253467 0.177138353595479 0.176665700253467 0.178156654934048 0.188315739643793 0.181291095149967 0.179390243943049 0.178043264118198 0.182627140926791 0.187412569797031 0.182873136501462 0.179525952262476 0.194970182655248 0.178360960292081 0.178967362683635 1 0|1 /|+ 30332170 30333357 30332938.889 30328900 30333661 + gene protein_coding_gene FALSE TRUE AT1G80680.1 PRE (PRECOZ, SUPPRESSOR OF AUXIN RESISTANCE3) Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens. similar to transporter [Arabidopsis thaliana] (TAIR:AT1G10390.2); similar to Peptidase S59, nucleoporin [Medicago truncatula] (GB:ABE79927.1); similar to Os03g0172000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049116.1); contains InterPro domain Peptidase S59, nucleoporin; (InterPro:IPR007230) 0.169626452402098 2.03187621808262 0.0749554997506407 1 2.50917088557659 14.5979088771812 0.169626452402098 0.0708578082278503
AT3G15480_at 9.24788843877907 9.58933662423085 8.3918276246801 8.53790709947846 9.30069956680328 9.20647998576441 9.57501389416656 9.8182639841643 9.70510357653501 9.40878865886028 10.3325479635627 10.1626805613230 9.7678791173264 9.84057427419193 10.1583456731861 9.68542888783267 9.22601111925377 9.6687806958552 9.41217268680698 0.113399468504427 0.108301434400044 0.116083718750670 0.115847936472402 0.115142445544820 0.111541688594346 0.112737463113920 0.110354065707186 0.112067022300717 0.112703884399015 0.109623238052234 0.110856374560807 0.115022617614534 0.112355021105126 0.113477363883700 0.108370228675506 0.113797629467306 0.111251616608201 0.112320130979396 3 3 - 5226502 5227626 5226858 5226255 5227796 - gene protein_coding_gene FALSE TRUE AT3G15480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52910.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) -0.175902218493955 -2.02899273955796 0.0752974032630512 1 2.50517071343282 18.890411824242 -0.175902218493955 0.0785397513880373
AT2G29630_at 11.8152188798075 11.7369299560759 12.0007102928045 11.8224540901901 11.769841289653 11.8745698370985 11.3930326091607 11.3818794449169 10.1443824399435 11.0506637340508 10.1597146949759 9.9263495522169 10.8410998580910 10.565439203919 10.1316569911050 10.5797760397774 11.5094033182907 10.5856417496129 10.3882912258176 0.0947447302157363 0.090150079721315 0.092164158291619 0.0894859167664246 0.092282335114911 0.0905087093602876 0.0932926408054457 0.0933865510548507 0.100232339195483 0.0922501031013899 0.0886741055280758 0.0882534324603752 0.0920450162112994 0.0930398098222173 0.0927028565992895 0.0882534324603752 0.0948426324558806 0.0921323075270111 0.0940314487905569 2 2 + 12676059 12676427 12676249 12674063 12677388 + gene protein_coding_gene FALSE TRUE AT2G29630.1|AT2G29630.2 Encodes ThiC involved in thiamine biosynthesis. Translation of ThiC is regulated by a riboswitch in the 3' of untranslated region of the messenger RNA.|thiamine biosynthesis family protein / thiC family protein similar to putative thiamin biosynthesis protein [Oryza sativa] (GB:AAK26130.1); similar to thiamine biosynthesis protein ThiC [Bacillus halodurans C-125] (GB:NP_242799.1); similar to putative thiamine biosythesis protein ThiC [Poa secunda] (GB:AAG49550.1); contains InterPro domain Thiamine biosynthesis protein ThiC; (InterPro:IPR002817) 0.147367348837122 2.02863835769147 0.0753395272489187 1 2.50467919985086 22.256911704598 0.147367348837122 0.0383060675449563
AT4G15940_at 8.65001268818735 8.3333866244759 8.7607819385918 8.81546574477431 8.80734114616529 8.53913437389731 9.08191740400392 8.86626563647143 7.83330567621936 8.38675787935373 8.5045203301827 8.3693252014129 8.43899975396112 8.49341472498286 8.50711665069223 8.22298363815425 8.53808338938233 8.27074819028082 7.95693585215303 0.128078764982537 0.118760830072093 0.124802399277258 0.120564029269186 0.119988312740834 0.126217146486212 0.126937051566099 0.129411606831687 0.157472627803379 0.118786782656799 0.123570351278941 0.121251741020926 0.122056438512659 0.121117446844341 0.116215891964499 0.123887346548822 0.121338788960836 0.136373059999580 0.120072685960784 4 4|0 +|/ 9038658 9040152 9039548.889 9038304 9040758 + gene protein_coding_gene FALSE TRUE AT4G15940.1 fumarylacetoacetate hydrolase family protein similar to fumarylacetoacetate hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G16700.1); similar to isomerase-like protein [Arachis hypogaea] (GB:AAZ20293.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (InterPro:IPR002529) 0.178467197439151 2.02856621477127 0.0753481053823802 1 2.50457914346351 16.9703625882992 0.178467197439151 0.0814797043798626
AT2G14880_at 7.70497758157714 8.00497294863373 7.28279387804811 7.53448196698532 7.96209582783282 7.54947555855797 8.3611768800859 8.54936821463471 7.476343417747 7.76068367289619 7.25376000670888 7.94209237703908 7.7522183868094 7.44987106457096 8.59524210994701 7.76897618586597 7.95465791401011 7.32744204856563 7.50898989989748 0.158259385469959 0.152693702258543 0.153049455279145 0.158232175683807 0.153935219502775 0.164077747642365 0.157643898129226 0.164662721397269 0.178050996705802 0.163978050646324 0.170292169408163 0.155968766856267 0.159045405131239 0.165875860990048 0.154227228380369 0.155573409265016 0.153461797892839 0.170177744277774 0.156850323237159 2 2 - 6400779 6401890 6401579.909 6400414 6402020 - gene protein_coding_gene FALSE TRUE AT2G14880.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G34290.1); similar to Os03g0761000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051349.1); similar to SWIb domain-containing protein [Solanum chacoense] (GB:AAQ24534.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.199692625100372 -2.02771586781078 0.0754492867315292 1 2.5033998571193 15.5374369446461 -0.199692625100372 0.103690735620050
AT3G25570_at 6.21725390108592 6.5783658639731 6.03316285674689 6.19235870042551 6.27317714441143 6.03489336896983 7.90671888729455 6.99657784934324 5.6865897589664 5.90977836661648 5.36633226555773 6.19094607110588 6.16832783841158 5.80590117264288 4.96958588654195 7.07523518587477 7.33157510937398 5.71573937336121 5.95767749288493 0.204914156514324 0.208976147451108 0.212248694818180 0.208544040540656 0.211192319730521 0.207335605577828 0.208466724219164 0.212670307905335 0.226831609258043 0.207131065553627 0.205871653822790 0.201557080072556 0.212688751685844 0.207751231772782 0.214768503415194 0.207240814151099 0.217124201642579 0.201557080072556 0.212938788254245 3 3 - 9288650 9289152 9288864.818 9288470 9290575 - gene protein_coding_gene FALSE TRUE AT3G25570.1 adenosylmethionine decarboxylase family protein similar to SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) [Arabidopsis thaliana] (TAIR:AT3G02470.3); similar to S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC) [Contains: S-adenosylmethionine decarboxylase alpha chain; S-adenosylmethionine decarboxylase beta chain] (GB:Q9M4D8); contains InterPro domain S-adenosylmethionine decarboxylase; (InterPro:IPR001985) -0.282362142208155 -2.02601494780311 0.0756520700398596 1 2.50104139219273 12.4937155227053 -0.282362142208155 0.176556558744770
AT3G56360_at 10.4431499712420 10.5380705284301 10.5879217113865 10.458431267175 11.1552858976157 11.1030796847242 10.8481889315796 11.0665476114861 11.2982498441072 11.6738617720925 11.0093150807306 10.9323709930384 11.3095586121805 11.3049519729197 10.7412478422169 11.2766777355685 11.3656234056139 10.7966413736288 11.5252551429909 0.0919770019658382 0.09020174954145 0.0948595032933235 0.0890142768219589 0.0907293100208169 0.101420067256087 0.0914684214694506 0.0934100989723452 0.102435246464681 0.0888530137585608 0.092563821229247 0.0918370565976227 0.0899655739760487 0.0917436703969535 0.0943793607844522 0.0916024874568748 0.0959133245570314 0.0998632026681765 0.0905187842923129 3 3 + 20907771 20908292 20908004.636 20907460 20908572 + gene protein_coding_gene FALSE TRUE AT3G56360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP03420.1) -0.152441748267735 -2.02540059877904 0.0757254418276242 1 2.50018968534232 22.0706697654802 -0.152441748267735 0.0477654977127546
AT1G20980_at 9.2480853432769 9.6998200085711 9.53753163821327 9.55453860161568 9.81513345595802 9.70899133898052 8.9060068061271 9.23172983406774 9.5773340527388 9.22842482618428 9.4898024294834 9.36800170193872 9.3195822095908 9.46260106399915 8.93437764013046 9.62908355873255 9.21607197439223 9.18225204422209 9.15520941701474 0.118926466576977 0.111462052060943 0.119044660109922 0.120184016648513 0.110412507991624 0.111467337877773 0.113085813891692 0.109205647955704 0.116200090336454 0.114958084113013 0.114578822982235 0.110020499111747 0.121203174115968 0.113369564022494 0.112387954322119 0.109905140018358 0.120558566719275 0.116493690731602 0.118571674733271 1 1 + 7328250 7328808 7328513.091 7324577 7329374 + gene protein_coding_gene FALSE TRUE AT1G20980.1 SPL14 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 14); DNA binding / transcription factor Encodes a nuclear plant-specific protein with features characteristic of a transcriptional regulator, including a nuclear localization signal sequence, a plant-specific DNA binding domain (the SBP box), and a protein interaction motif (ankyrin repeats). It unctions as a transcriptional regulator that plays a role not only in sensitivity to FB1, but also in the development of normal plant architecture. Identical to Squamosa promoter-binding-like protein 14 (SPL1-related protein 2) (SPL14) [Arabidopsis Thaliana] (GB:Q8RY95;GB:Q9SMW6;GB:Q9SMX0;GB:Q9SYN9); similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G76580.1); similar to Squamosa promoter-binding-like protein 16 (SPL1-related protein 3) (GB:Q700C2); similar to SBP [Medicago truncatula] (GB:ABE79674.1); similar to putative SPL1-Related2 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10073.1); contains InterPro domain SBP; (InterPro:IPR004333); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.193768536589866 2.02385023698466 0.0759109072020533 1 2.49804065839334 18.7855017999132 0.193768536589866 0.098156490069734
AT1G13080_at 8.83762609154393 9.11594990425241 9.21504679161598 9.3046393267739 9.52058606732706 9.1585362742051 10.3829980060414 10.5182981393578 10.1112288028743 10.2974263690269 10.2456808697355 10.3370646636198 10.2330600203204 10.2342087247264 9.80162767519261 10.6027662273324 9.9418737481447 10.3650063785903 10.0904029394422 0.133221324931764 0.128857357920499 0.131637525688525 0.131302092286166 0.12918362157011 0.135683645783779 0.123449793749378 0.131284163132535 0.124060549768968 0.128336870553153 0.127645079704397 0.127409238162237 0.128874190223718 0.129922504777096 0.124103927135452 0.123449793749378 0.131810508908125 0.128276325032261 0.126046401374358 1 1 + 4460295 4460780 4460555.182 4459164 4460938 + gene protein_coding_gene FALSE TRUE AT1G13080.1|AT1G13080.2 CYP71B2 (CYTOCHROME P450 71B2); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B2 (EC 1.14.-.-) (CYP71B2) [Arabidopsis Thaliana] (GB:O65788;GB:Q41953;GB:Q8VZK5;GB:Q9SAE2); similar to CYP71B20 (cytochrome P450, family 71, subfamily B, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26180.1); similar to CYP71B19 (cytochrome P450, family 71, subfamily B, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26170.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|similar to CYP71B20 (cytochrome P450, family 71, subfamily B, polypeptide 20), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26180.1); similar to CYP71B19 (cytochrome P450, family 71, subfamily B, polypeptide 19), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26170.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.180103792820861 -2.02272756603465 0.0760454826716289 1 2.49648476660428 19.6999669462591 -0.180103792820861 0.0838694294178179
AT2G44670_at 8.28340743956566 8.86359758766447 8.07771428207886 8.04617526507571 8.94074297235856 8.566865342178 9.26330440102945 9.30787570053966 9.30167263015477 8.31019314170063 9.25203814371954 9.5079590032674 8.62242039628985 9.15109902573632 8.63647235067202 9.2207502818385 7.7176370223418 8.67442214913008 8.66242729990625 0.148250251032049 0.143404848596462 0.153581382041587 0.163309894598039 0.149020563503922 0.149896153690482 0.150081833044079 0.149992469578222 0.154058525805182 0.153624571302127 0.147980514212170 0.150642453888642 0.145825363412057 0.148129270234868 0.148895530454063 0.153852118545671 0.170060587970981 0.143404848596462 0.152896127109663 2 2 + 18432354 18432720 18432496.545 18432255 18433135 + gene protein_coding_gene FALSE TRUE AT2G44670.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT4G17670.1); similar to hypothetical protein 40.t00027 [Brassica oleracea] (GB:ABD65149.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) -0.215959855369904 -2.02128736042020 0.0762184583416588 1 2.49448917053344 17.4716841174171 -0.215959855369904 0.119819130264402
AT1G76990_at 10.3597143037970 10.3893735728537 10.1446681181626 10.0452030578551 10.8971257914363 10.4150755179204 10.3392232702513 10.2933315156983 10.6524147475063 10.9135847548877 10.4622433019126 10.4406314495168 10.4137241823470 10.4301152340415 10.1567586696877 11.0478393374332 10.1345501958137 10.3580417568476 10.9054847722289 0.0760435264555182 0.0726960213120804 0.0770727116432204 0.0800253420222639 0.0751048463004055 0.0813088222679418 0.0733512142660783 0.076041631656755 0.0854942346984186 0.077889598833686 0.07615013189898 0.0736079085296578 0.0735555672435773 0.0726960213120804 0.0792973404295172 0.0730093195452464 0.0756607997045166 0.0762275513164198 0.0772843763133861 1 1 + 28939433 28940017 28939675 28937056 28940444 + gene protein_coding_gene FALSE TRUE AT1G76990.1|AT1G76990.2|AT1G76990.3|AT1G76990.4 ACR3 (ACT Domain Repeat 3) similar to ACR4 (ACT REPEAT 4), amino acid binding [Arabidopsis thaliana] (TAIR:AT1G69040.2); similar to Os02g0555600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047123.1); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os03g0413100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050359.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.181616309948697 -2.02094348529250 0.0762598155077913 1 2.49401274617517 20.9876224472423 -0.181616309948697 0.085701640467231
AT4G26555_at 8.17835124611797 7.9278817982279 7.92176634148897 7.73996689155443 8.80610955060932 8.06985902925203 8.72392600897289 8.59445078282199 8.7345475845845 8.8382796003717 8.72038820884245 8.46277782118868 8.73423305683925 8.57250338410915 8.64009502636164 8.75619829667819 8.62315857592904 8.61548525557348 9.11387887372805 0.125963363408439 0.126505616444856 0.129376806364512 0.134092294984136 0.122590257744299 0.124264738934297 0.132269791534993 0.124275956864763 0.130805762475404 0.122724586249909 0.134319144028057 0.118979650726806 0.121249212750717 0.123141984749201 0.131642400590141 0.125019793977652 0.134569563542746 0.121837406729711 0.122717501706852 4 0|4 /|- 13404649 13405975 13405430.7 13404471 13406251 - gene protein_coding_gene FALSE TRUE AT4G26555.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G19830.1); similar to Os02g0199300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046213.1); similar to FKBP-type peptidyl-prolyl cis-trans isomerase (ISS) [Ostreococcus tauri] (GB:CAL56186.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.238345369423424 -2.02056501319048 0.0763053586046665 1 2.49348841608377 17.0133757758398 -0.238345369423424 0.140015516812613
AT4G29380_at 6.44177005754371 6.35601037038468 6.47676436086314 6.62557657376929 7.09213211395043 6.70375280088676 6.19362465816795 5.64936590565609 6.22376677337634 5.935112063861 5.47402738051042 5.50759283779384 6.02846849232619 5.93948236234612 5.46978976914271 6.41174163092531 6.37033223962913 6.06998797087094 5.96840159773402 0.191716327081995 0.186269010865884 0.194641305008767 0.191622476804410 0.205616809003030 0.192792810043013 0.197452818274582 0.192878878494086 0.196804420454231 0.189528322893673 0.196658822921517 0.194377417772620 0.187756231031054 0.204579979898981 0.18778644799946 0.192797000822386 0.199707288674837 0.192054012340271 0.187900217956747 4 4|0 +|/ 14463693 14464607 14464284.25 14458828 14464865 + gene protein_coding_gene FALSE TRUE AT4G29380.1 protein kinase family protein / WD-40 repeat family protein similar to ATMPK17 (Arabidopsis thaliana MAP kinase 17), MAP kinase [Arabidopsis thaliana] (TAIR:AT2G01450.4); similar to protein kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19085.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain HEAT; (InterPro:IPR000357) 0.215432369107632 2.01992512962811 0.0763824180910706 1 2.49260199430213 12.4180519287029 0.215432369107632 0.119464872476768
AT1G49670_at 9.05690777152014 9.26089249037832 9.4573399164538 9.42889188880143 9.5758798486641 9.09972092960249 9.3805252513778 9.19537939070788 8.59898817777461 9.03131374150045 9.04583788224238 9.01796946536817 8.85474154837752 9.01751111715337 8.89999662025143 8.95772084073322 8.95370337348357 9.19213229238194 8.70460483636018 0.132768297130351 0.130440063894108 0.132955695223721 0.130286821255422 0.137911063185824 0.132887050270415 0.132603919293205 0.138033244020106 0.135642472760618 0.134050475799659 0.130027784700340 0.137037923054969 0.140633674222123 0.141739805291136 0.136185890181045 0.130709305893632 0.141577316751683 0.134088136952433 0.130046910836867 1 1|0 -|/ 18385275 18386391 18385973.625 18384926 18389776 - gene protein_coding_gene FALSE TRUE AT1G49670.1 ARP protein (REF) similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT3G56460.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE83367.1); similar to NADPH oxidoreductase homolog [Cicer arietinum] (GB:BAA78050.1); similar to Alcohol dehydrogenase superfamily, zinc-containing; Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE83366.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Quinone oxidoreductase/zeta-crystallin; (InterPro:IPR002364); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.190590655252477 2.0196011874607 0.0764214582021616 1 2.49215327251368 18.1923191331269 0.190590655252477 0.095325534080045
AT2G16380_at 6.71201721527873 6.69034010324447 6.50894260737052 6.67405232381437 6.96991232036573 6.99206839980113 6.29413379068671 6.0622967419946 6.86387918878122 6.49462181965214 6.92278507603139 7.112031514041 6.42204447420846 6.58093012241842 6.48912159387297 6.64613427036444 6.68510593472995 6.47928044004346 6.76429589796146 0.161880317466803 0.154056634809991 0.155251352067907 0.152454088216718 0.156400192085133 0.161103143703951 0.155583840835033 0.155416024617802 0.170240695148875 0.163401076454379 0.162079193432876 0.156785394273901 0.156167155916942 0.171112102780686 0.160201544546412 0.156786380062959 0.160238510479794 0.167067971352644 0.168354476492871 2 0|2 /|+ 7095139 7095616 7095388.5 7092866 7096239 + gene protein_coding_gene FALSE TRUE AT2G16380.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to transporter [Arabidopsis thaliana] (TAIR:AT4G34580.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79641.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.153063579726151 2.01900808090201 0.0764929867215274 1 2.49133176030201 13.3003595113255 0.153063579726151 0.0495463767255016
AT2G21940_at 5.52371600283944 5.62033211200914 5.47520756602195 5.19463327116523 5.86473511682187 5.36867912011612 6.15788796610084 5.73938063175361 4.82320891749563 5.40548253057191 5.0971230955694 4.71440633689093 4.87230428761573 5.45249309116012 4.33098689637907 4.90941785672783 5.48448077632393 4.7991100580991 5.10711838057109 0.219073362576540 0.210650608948011 0.2223781898679 0.216903629765905 0.216774164517083 0.221688322302042 0.214630084828884 0.225509471831751 0.231987583297779 0.225463232001836 0.216114121327789 0.210650608948011 0.228116359055423 0.222145570312039 0.224187058077297 0.217542107168335 0.224031935508550 0.210650608948011 0.223963312377228 2 2|0 +|/ 9358819 9359773 9359426.625 9357632 9360311 + gene protein_coding_gene FALSE TRUE AT2G21940.1|AT2G21940.2|AT2G21940.3|AT2G21940.4|AT2G21940.5 shikimate kinase, putative|ATP binding / shikimate kinase Identical to Probable shikimate kinase, chloroplast precursor (EC 2.7.1.71) [Arabidopsis Thaliana] (GB:Q9SJ05); similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623)|similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to Shikimate kinase, chloroplast precursor (GB:Q00497); contains InterPro domain Shikimate kinase; (InterPro:IPR000623)|similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39540.2); similar to putative shikimate kinase [Fagus sylvatica] (GB:ABA54868.1); contains InterPro domain Shikimate kinase; (InterPro:IPR000623) -0.219455859672458 -2.01669747921988 0.0767722609329421 1 2.48813200831542 10.6528099280495 -0.219455859672458 0.123498063253826
AT2G22080_at 8.00780725960623 7.838147637956 7.24617455598872 6.810848657379 7.88378874338166 6.95778081894967 8.07734789904484 7.60704641838737 6.85491510224065 7.7630658010565 7.06171554957644 7.91296967369669 7.60774693052469 7.7271985228587 7.15889960223742 7.73293490467488 7.46786710113755 6.81763716628414 7.55353936606324 0.179257559660602 0.188229431944287 0.191091488104924 0.193217956538373 0.206293948636050 0.182017905307411 0.190737182020351 0.181183200404903 0.195007558929493 0.186418703266558 0.191468970525187 0.179257559660602 0.187523539689234 0.190514117470261 0.182835739052324 0.179257559660602 0.179531061663418 0.196382643649771 0.179257559660602 2 2 + 9394676 9395035 9394834.4 9393596 9395263 + gene protein_coding_gene FALSE TRUE AT2G22080.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G11910.2); similar to calcium-binding protein [Brassica napus] (GB:AAD02824.1) -0.306287342451752 -2.01627681669394 0.0768232105898027 1 2.48754958315101 14.9668067177503 -0.306287342451752 0.197082381624997
AT1G18700_at 6.08306759789004 6.2313025137217 5.96301506004097 5.97801083413841 5.69077165062778 5.90974584868944 5.34118766655991 5.35967051871062 5.63649205119783 5.96211596202998 6.16925539996399 6.6999799269268 6.4979911151125 6.11532498347978 5.9858911871814 6.32417000166867 6.35139323213148 4.98555127289422 6.31590295612738 0.209150216111587 0.200671440458759 0.201058430036186 0.199269882768510 0.199034660766281 0.205699929249991 0.199016576044691 0.200093806258021 0.217410326355047 0.202507332718097 0.200792347793826 0.208143264134360 0.200602607024299 0.209390937198948 0.204807689367367 0.20330743289229 0.223628404083384 0.211575323882377 0.203881188639701 1 1|0 +|/ 6442280 6443012 6442742.1 6437523 6444068 + gene protein_coding_gene FALSE TRUE AT1G18700.1|AT1G18700.2 DNAJ heat shock N-terminal domain-containing protein|heat shock protein binding similar to galactosyl transferase GMA12/MNN10 family protein [Arabidopsis thaliana] (TAIR:AT1G18690.1); similar to Os07g0632600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060367.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL52843.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.150634878810854 2.01589534416668 0.0768694418288674 1 2.48702144860762 11.8759456094831 0.150634878810854 0.0459458596604714
AT3G14210_at 12.3072291004599 12.6375664891909 12.3343199506507 12.4405559873294 12.7772220381958 12.6493885315315 12.9290050240199 12.9087140531892 13.4909903577104 13.5085183868257 13.1669882747374 13.5988177705032 13.0993081966412 12.9087242624691 13.7822144892767 13.1201644936749 13.0139408234697 13.3492107106536 13.3071740554851 0.0801504848824077 0.0810705568045393 0.0802823358677493 0.0803528384027869 0.0779601143221779 0.0819722286513603 0.0785021465421348 0.0779601143221779 0.0888988845610666 0.0795947115263713 0.0841677524406429 0.0793434717285657 0.0816101819645973 0.0779601143221779 0.0818379533670198 0.0779601143221779 0.0811037765503847 0.0779601143221779 0.0816181180289603 3 3 + 4730895 4731527 4731258.636 4729830 4731810 + gene protein_coding_gene FALSE TRUE AT3G14210.1 ESM1 (EPITHIOSPECIFIER MODIFIER 1); carboxylic ester hydrolase A semidominant QTL which has an epistatic effect on the Epithiospecifier gene. Represses nitrile formation and favors isothiocyanate production during glucosinolate hydrolysis. The functional allele deters the insect herbivory T. ni. similar to myrosinase-associated protein, putative [Arabidopsis thaliana] (TAIR:AT1G54010.1); similar to myrosinase-associated protein [Brassica napus] (GB:CAA71238.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.162948422725163 -2.01578360860615 0.0768829883101219 1 2.48686676035325 25.9682411773302 -0.162948422725163 0.064091470487487
AT2G43950_at 7.14877054108145 7.84234361854483 7.23900221438727 7.02065170962660 7.7440305876959 7.72405164581919 7.82904202674987 7.9937444878601 6.74539923590651 7.07069491916242 6.7930810303383 6.71368126996179 6.82950488601139 6.21973016634635 6.83432100845352 6.86070437216008 6.64023822046272 6.35641370045349 6.6893253189597 0.203590709502974 0.197381848557549 0.203403903483701 0.202150059759863 0.198086335543111 0.200313357086268 0.202849739041876 0.210568304152784 0.217900752914153 0.204055098016535 0.198464398926232 0.201438168587976 0.200795424332301 0.202858079982873 0.206864970623409 0.197663083548998 0.204766601181993 0.210944907085263 0.209078112021521 2 2|0 -|/ 18207693 18208827 18208330 18207400 18209805 - gene protein_coding_gene FALSE TRUE AT2G43950.1|AT2G43950.2|AT2G43950.3 OEP37; ion channel|OEP37 Constitutes a peptide sensitive ion channel in chloroplast outer membranes. Accumulates in germinating seeds and developing embryos. similar to outer envelope protein [Pisum sativum] (GB:CAB50915.1) -0.225360811039784 -2.01475673426442 0.0770075912533647 1 2.48544525767642 14.3132541821955 -0.225360811039784 0.129067529951861
AT1G55110_at 7.8231410547956 8.08064383808986 8.44908747092244 8.32391679964332 8.91261580198166 8.58610549068873 8.22324470512267 7.3900630454655 7.28359984540014 7.24728379501134 6.67126178789382 6.99269750714968 7.70421687778942 7.4216129203229 6.47476041162427 7.72877474807352 7.70594934506901 6.52963198353576 7.4125658761953 0.200693346527589 0.19315830450452 0.199794067651761 0.192034717725771 0.200673438670954 0.198605997029731 0.192525880688327 0.19226646330858 0.207308548737338 0.189441329222975 0.188236642667573 0.189932479298255 0.189820882022538 0.191590948534345 0.201580640236875 0.196268926214682 0.195368561525307 0.190049020600316 0.187241763817451 1 1 - 20564113 20564631 20564394.636 20563951 20566838 - gene protein_coding_gene FALSE TRUE AT1G55110.1 ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 7/ATIDD7; nucleic acid binding / transcription factor/ zinc ion binding similar to ATIDD11 (ARABIDOPSIS THALIANA INDETERMINATE(ID)-DOMAIN 11), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G13810.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE79766.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.263894127710335 2.01401396020759 0.0770978422111378 1 2.48441716614642 15.457650460781 0.263894127710335 0.16259552064197
AT2G33845_at 8.10486859523067 7.80004118562551 7.88434619722238 8.05614281766015 7.09845678272598 7.00202013731804 6.89910072104887 7.2072657488322 6.65613754329065 6.06629417958308 6.83114598556747 6.68285953325546 6.5143488778319 6.77916207724522 6.8209122570615 6.81225506834454 6.63618740049603 6.44854394047182 6.30419107182426 0.212907766127645 0.20879867142454 0.220821955382705 0.211741809992209 0.204626950468126 0.215307788344626 0.205528751600957 0.205806624240971 0.222743626582361 0.217558224520203 0.214586995215482 0.207603288237739 0.205593320729505 0.209014576700006 0.205855654961483 0.204626950468126 0.222895339041068 0.209949477543306 0.219260797446631 2 2 + 14324878 14325735 14325272.545 14324752 14326465 + gene protein_coding_gene FALSE TRUE AT2G33845.1 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT4G28440.1); similar to Os01g0238600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042538.1); similar to unknown [Medicago sativa] (GB:AAZ32857.1); similar to Os01g0754100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044277.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.177945857674455 2.01335609063809 0.0771778619514748 1 2.48350668493845 14.0229725185914 0.177945857674455 0.0823964739131749
AT4G16143_at 8.07377048941252 8.05750194563221 7.90438522374675 7.92856477557703 8.26724544877115 7.74330627082368 8.39434088368499 8.35297972394934 6.82978360211832 6.93597918323512 7.24157246003275 7.23781242182154 7.88542978504257 7.55725043440567 7.64602704297481 7.46113852102563 7.0522273924238 7.20373995558811 6.5744367848551 0.165425175447518 0.168409275401500 0.175165267316826 0.165425175447518 0.168130351505301 0.179511066107741 0.166479264388730 0.165496013066528 0.177882329016731 0.181271137203621 0.178832673299500 0.165425175447518 0.16922471015914 0.169050787009581 0.169501872096582 0.177336125877524 0.191031904000460 0.174278338073903 0.173606697793070 4 4 - 9134783 9135998 9135502.818 9134003 9137215 - gene protein_coding_gene FALSE TRUE AT4G16143.1 importin alpha-2, putative (IMPA-2) similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); similar to importin [Oryza sativa] (GB:AAQ13406.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.185905198660702 2.01288443866775 0.0772352804349064 1 2.48285397921938 15.1856199827333 0.185905198660702 0.0910919253764308
AT3G02050_at 8.62665951080958 8.6311589332471 8.7147319193068 8.74802763005193 8.82537776535224 8.59466595336396 9.1252922452855 9.18684565336351 8.13639446103575 8.76296022672312 8.41899082496353 8.05566906764845 8.48893446468138 8.72982221922815 8.03642332288598 8.66292333957565 8.10148499478575 8.38628641926497 8.55343161005024 0.121606063689307 0.121576013630488 0.125788036967653 0.12530319979384 0.121931490815961 0.129645232108595 0.125034481179764 0.123335863125059 0.139445380807226 0.122655969975269 0.123198549162712 0.123225934243854 0.125175349973985 0.127826327594424 0.127649535887281 0.121850473306951 0.129146470130288 0.123550554236451 0.129436937829863 3 3 + 353644 354038 353802.909 350623 354352 + gene protein_coding_gene FALSE TRUE AT3G02050.1 KUP3 (K+ uptake permease 3); potassium ion transporter potassium transporter KUP3p (KUP3) Identical to Potassium transporter 4 (AtPOT4) (AtKUP3) (AtKT4) (POT4) [Arabidopsis Thaliana] (GB:Q9LD18;GB:O22400;GB:Q9SGA3); similar to TRH1 (TINY ROOT HAIR 1), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT4G23640.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to potassium transporter [Phragmites australis] (GB:BAE93236.1); similar to potassium transporter [Phragmites australis] (GB:BAE93235.1); similar to potassium transporter HAK4 [Hordeum vulgare] (GB:ABE99812.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.147991768149078 -2.01250539611600 0.0772814545654555 1 2.48232946529295 17.2287594167970 -0.147991768149078 0.0417293652544191
AT3G28130_at 5.72686419715954 5.90990882423635 6.1041430575621 5.76985392059716 6.67165447568855 6.02487349754299 7.68133720366282 7.38570714749117 6.75632405595313 7.3406541160187 7.29489768431552 7.47126343553675 6.9405784563712 7.38114446672622 6.83234276738424 7.24597368540285 6.82094548194361 6.62058615746142 6.95258996091913 0.191799053189216 0.183271436747841 0.187170319619523 0.187904438698629 0.181466902977977 0.184111719714912 0.184441750212701 0.185030181898501 0.199868631020663 0.182385122815666 0.183570178327136 0.180259804755364 0.184808048381104 0.185617319121846 0.182801311826089 0.180259804755364 0.180607682164339 0.191144433319312 0.186994668912407 3 3 + 10469132 10469878 10469439.545 10466753 10470148 + gene protein_coding_gene FALSE TRUE AT3G28130.1|AT3G28130.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28100.1); similar to Os01g0803300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044551.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58856.1); similar to putative nodulin MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAB92246.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620)|similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G28100.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.236939649680346 -2.01240290025861 0.0772939449539883 1 2.48218763786062 13.4555374044208 -0.236939649680346 0.139625981546558
AT2G28380_at 5.68177123015167 5.75588006117181 4.87612417503199 5.18304767640829 5.11733037226968 5.52819513879197 5.31943469340824 6.12937640932091 5.20443740127559 5.28983427960533 5.63237852831916 5.25774511120301 5.30918158058483 5.20658840156718 5.31526422520395 5.57930200635804 4.96507631563043 5.26616152468511 5.4278662350727 0.192686119702881 0.186393708619907 0.188387991677836 0.190322791209948 0.184007945919105 0.186381751544832 0.187839108776306 0.188130421294894 0.204101936110467 0.194020078149531 0.194063997486215 0.184007945919105 0.185396727489040 0.191088367685290 0.195774256286686 0.184007945919105 0.193476517263709 0.185126900767816 0.185717432992842 2 2 - 12141320 12141732 12141556.909 12140888 12143257 - gene protein_coding_gene FALSE TRUE AT2G28380.1 DRB2 (DSRNA-BINDING PROTEIN 2); double-stranded RNA binding Encodes a cytoplasmic dsRNA-binding protein. similar to DRB5 (DSRNA-BINDING PROTEIN 5), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT5G41070.1); similar to Double-stranded RNA binding [Medicago truncatula] (GB:ABE80978.1); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.268179175755794 -2.01213520028376 0.0773265766846208 1 2.48181722110718 10.7608157280752 -0.268179175755794 0.166394519984762
AT3G27310_at 6.89515822981101 7.35538459359877 6.78203116486425 6.7092781386314 7.76436979742569 7.10915920812132 6.51990782134163 6.79827204339927 6.53888713142359 6.59321917225506 7.08173746074987 7.00848849283147 6.7548141306102 7.20936288151494 6.48434877119816 7.00427679901637 6.63064321678294 6.54117926051967 6.5093292538534 0.226368270581181 0.214191831789984 0.224750831397363 0.218973671316867 0.222230540733389 0.238762612458609 0.225037225230653 0.219025404184143 0.228457677356309 0.219699888602159 0.215463933611453 0.217328376543749 0.219111047868526 0.228555408973308 0.223240727733825 0.213416570003688 0.235714515942808 0.227312347355775 0.222831343795608 3 3|0 -|/ 10088653 10089807 10089165.3 10088438 10090338 - gene protein_coding_gene FALSE TRUE AT3G27310.1 PUX1 (PLANT UBX DOMAIN-CONTAINING PROTEIN 1) encodes a protein that contains a UBX domain and regulates AtCDC48 by inhibiting its ATPase activity and by promoting the disassembly of the active hexamer. Phenotypic analysis of pux1 plants revealed that the loss of PUX1 accelerated the growth of various plant organs including roots and inflorescence shoots. AtCDC48 and SYP31 colocalize at the division plane during cytokinesis and to interact in vitro and in vivo. similar to PUX2 (PLANT UBX DOMAIN-CONTAINING PROTEIN 2), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01650.1); similar to H0811E11.4 [Oryza sativa (indica cultivar-group)] (GB:CAC09488.2); similar to OSJNBa0081L15.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE03155.2); similar to Os04g0485200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053131.1); contains InterPro domain UBX; (InterPro:IPR001012) 0.245620048015966 2.01202857173368 0.0773395780444295 1 2.48166968306257 13.6849459058977 0.245620048015966 0.147237778478307
AT3G57040_at 8.08504887218393 8.26647750742302 7.92441345761031 8.16915708361279 9.0729028457932 8.81800236449132 10.1783565175152 9.74022235464037 8.6026240705547 9.59712953273383 9.49981946295758 9.4515552243224 9.57514905660826 9.62834721028805 9.6279696369098 9.69767487690826 9.76957416138038 9.31256708456458 9.97750498061627 0.126181768447133 0.121757298869726 0.137942869536895 0.127800201343804 0.119276377941085 0.129605128375630 0.123117562553641 0.127474601804799 0.151320248327436 0.121843770836645 0.129035144861708 0.119276377941085 0.119276377941085 0.119276377941085 0.120546385358145 0.120010418481358 0.123031938985752 0.129220532452173 0.122773346847755 3 3|0 +|/ 21121244 21122180 21121853.1 21120593 21122411 + gene protein_coding_gene FALSE TRUE AT3G57040.1 ARR9 (RESPONSE REACTOR 4); transcription regulator response regulator ARR9, A two-component response regulator-like protein with a receiver domain with a conserved aspartate residue and a possible phosphorylation site and at the N-terminal half. Appears to interact with histidine kinase like genes ATHP3 and ATHP2 Identical to Two-component response regulator ARR9 (Response reactor 4) (ARR9) [Arabidopsis Thaliana] (GB:O80366); similar to ATRR3 (RESPONSE REGULATOR 3), transcription regulator [Arabidopsis thaliana] (TAIR:AT2G41310.1); similar to SRR198 [Striga asiatica] (GB:ABG35780.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.196747406894791 -2.01155833333149 0.077396939965463 1 2.48101905849023 18.2631984340141 -0.196747406894791 0.10234418174584
AT2G03690_at 7.4813075879122 7.32495195622679 7.14926896306635 7.10540152092034 7.37482841183755 7.5121162233231 7.28051505140845 7.17485919295887 7.44298397868568 7.42497411514216 7.19395384300682 6.68455752859985 7.06316091629057 7.04131235807427 7.45811840561684 7.1214419695718 7.34010440767459 7.31935333250141 7.38572521792169 0.164930899919961 0.163073598637257 0.182356416895447 0.171408701884292 0.167904305419364 0.16710443109053 0.167009251653974 0.171586113822497 0.162294248562297 0.165299905981863 0.165369477474432 0.171149211497082 0.170365654218211 0.169422660278987 0.165620490369240 0.162808441105573 0.180949536073568 0.164853023724805 0.164875838163297 2 2 - 1122204 1122891 1122461.727 1121897 1123168 - gene protein_coding_gene FALSE TRUE AT2G03690.1 coenzyme Q biosynthesis Coq4 family protein / ubiquinone biosynthesis Coq4 family protein Ubiquinone biosynthesis protein COQ4 homolog. Identical to Ubiquinone biosynthesis protein COQ4 homolog [Arabidopsis Thaliana] (GB:Q9ZPR0); similar to Os04g0674200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054237.1); similar to H0403D02.13 [Oryza sativa (indica cultivar-group)] (GB:CAH68184.1); contains InterPro domain Coenzyme Q biosynthesis Coq4; (InterPro:IPR007715) -0.147574379711285 -2.01151166398394 0.077402635150503 1 2.48095448893045 14.5857285046651 -0.147574379711285 0.0410918434584643
AT4G02500_at 8.75738684645862 9.09650889191146 7.27161463082559 7.90064362122721 8.54529150287451 8.37141019618207 9.14805422112588 9.32792397114999 8.65100436009109 8.60484818619631 9.22833133147713 9.7065379586508 9.1220560501047 9.21274926513134 9.18743822656979 9.07219733392916 8.7039489772856 9.24750345413039 8.48124769525105 0.153306630033533 0.146417042243854 0.15920264531051 0.151246321226650 0.156355011359144 0.148000662368386 0.145540244928444 0.146901589729073 0.153619150292531 0.154789964966336 0.155757850968472 0.146627304125459 0.146462408098372 0.152761978509048 0.149247383873769 0.145468574856863 0.151196116661019 0.146818077545994 0.160764207155055 4 4 + 1102483 1103297 1102811.182 1101507 1103610 + gene protein_coding_gene FALSE TRUE AT4G02500.1 ATXT2; UDP-xylosyltransferase/ transferase/ transferase, transferring glycosyl groups Encodes a protein with xylosyltransferase activity, which is specific for UDP-xylose as donor substrate and for oligosaccharides with a degree of polymerization >4. Although the enzyme utilizes either cellopentaose or cellohexaose, its activity is four-fold higher with cellohexaose as an acceptor compared to cellopentaose. The enzyme is able to add several xylosyl residues to the acceptor forming mono-, di- and trixylosylated polysaccharides. Identical to Putative glycosyltransferase 2 (EC 2.4.-.-) (AtGT2) (GT2) [Arabidopsis Thaliana] (GB:O22775;GB:Q9SYY3); similar to ATXT1, transferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G62720.2); similar to alpha-1,6-xylosyltransferase [Gossypium raimondii] (GB:CAI11451.1); similar to alpha-1,6-xylosyltransferase [Vitis vinifera] (GB:CAI11449.1); similar to Glycosyltransferase 5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95475.1); contains InterPro domain Galactosyl transferase; (InterPro:IPR008630) -0.227083292035215 -2.01074123300334 0.0774967112730688 1 2.47988861929856 17.4344186044724 -0.227083292035215 0.131027532542157
AT4G17270_at 8.29900565369749 8.34641549699635 8.11376167052831 8.51831186097629 8.54778979688174 7.97153153699104 7.95654343224088 7.9872017288093 7.23363629323734 7.38542469957375 7.555938288405 7.89468881970064 7.50692966707757 7.91018105592205 7.62883182392245 7.64906884685858 7.75009190530802 7.27803032934408 7.43843781545643 0.175224388044917 0.176252641645214 0.186350917643867 0.169422022911421 0.169585993247851 0.170172691494208 0.176994553173385 0.172090037251157 0.198339326399952 0.171706319834428 0.173024087731776 0.170840589004807 0.165331031883444 0.175184260702809 0.170620307178598 0.172047568038958 0.170383828217742 0.182131237575916 0.181877354792542 4 4|0 +|/ 9677185 9678546 9677903.6 9676140 9678790 + gene protein_coding_gene FALSE TRUE AT4G17270.1 Mo25 family protein Identical to Putative MO25-like protein At4g17270 [Arabidopsis Thaliana] (GB:Q9M0M4;GB:O23570); similar to Mo25 family protein [Arabidopsis thaliana] (TAIR:AT5G47540.1); similar to MO25 protein -related [Brassica oleracea] (GB:ABD64974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.217388813859902 2.01027670499339 0.0775534872879525 1 2.47924601547163 15.7171799945517 0.217388813859902 0.122236150005214
AT4G18070_at 8.49614041391874 8.58400280498917 8.09487355842541 7.76441799713938 8.79797966610028 8.66486403755852 9.18855571383875 9.1729099832694 8.94935751905068 8.3628005757097 9.09618356620121 8.75956294963947 8.8872119548516 8.98703406379535 8.5885698635333 8.85728286824767 8.17766644410841 8.8671882917448 8.4031370454125 0.114452511680949 0.112603957803016 0.122092280239399 0.122044461797342 0.113855283738341 0.114985602917712 0.115485677418937 0.117020374530724 0.118475668650175 0.124011549670354 0.112921531083345 0.112603957803016 0.116475023958587 0.112627690431557 0.119616898396855 0.116110762795184 0.128839153245019 0.118303290538993 0.127815366735533 4 4|0 +|/ 10031794 10032105 10031939.7 10030644 10032975 + gene protein_coding_gene FALSE TRUE AT4G18070.1|AT4G18070.2|AT4G18070.3|AT4G18070.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29530.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_500773.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29530.1) -0.162022980328590 -2.00933394841915 0.0776688370557424 1 2.47794198867031 17.2701442953997 -0.162022980328590 0.063557311484416
AT4G11740_at 7.68573455719498 7.30000082542098 7.92645201416297 7.92837749042468 7.74322183327037 7.34511341258495 7.08925767980194 7.0664598608552 7.43823701499342 7.312705519491 7.20197440468539 6.8831040179198 7.03885471474007 7.38960858951491 7.00161120334278 7.39522477592573 7.07342100556414 6.90351114641924 6.79192954069943 0.186259552690356 0.177999690212036 0.189777840660207 0.188363711439573 0.182844317434430 0.195359422612648 0.183306917373828 0.178720471794780 0.21238189004174 0.184313737073917 0.184971656094909 0.184181612791424 0.190422375534113 0.185203284986642 0.183714830030571 0.179288261968859 0.197226334630538 0.196730835607441 0.183467597850364 4 4|0 +|/ 7073971 7075226 7074517.222 7071854 7075495 + gene protein_coding_gene FALSE TRUE AT4G11740.1 SAY1 Isolated as a suppressor of a dominant mutant in the Ara4 gene that was expressed in yeast ypt1 mutant strains. A novel protein with a small region of similarity to coil-coiled domain of yeast VSP27 protein. similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to Os08g0546400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062421.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46494.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.190192165330924 2.00834898240465 0.0777895278331291 1 2.47657976885362 14.6565127545438 0.190192165330924 0.0960109200094799
AT3G18500_at 9.09621792452781 9.03429255071277 9.13381984522724 8.95482506709297 9.35663963263305 8.20713331523384 10.0204905007207 9.61745476767454 8.80616065835397 9.65830304756466 9.22431957036675 9.1963520305348 9.24815394297777 9.38109796026663 8.67313599527879 9.4626020924695 9.23702678143895 9.25698796730195 9.5307392473209 0.117560475497191 0.120843286095410 0.120888330860539 0.124171637220343 0.119146181162353 0.128960287367426 0.117466520943128 0.121169332713362 0.144911920784369 0.120064700400287 0.124364871552633 0.117408915549163 0.121319269217373 0.120662879716933 0.134547549955394 0.117408915549163 0.140444284841410 0.122455132724534 0.117408915549163 3 0|3 /|+ 6354257 6355251 6354824.111 6352495 6355446 + gene protein_coding_gene FALSE TRUE AT3G18500.1|AT3G18500.2 similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G73875.1); similar to Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE91612.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.325392123014649 -2.00828061255746 0.0777979120926491 1 2.47648521980191 18.4484561306408 -0.325392123014649 0.213333410265918
AT3G05910_at 9.10417440154182 9.2978594862165 8.49355401061482 8.42805282993445 9.477040005176 9.48865982372146 9.51905272671846 9.38367152328025 10.4878248535297 10.1094737810563 10.7659122730320 10.5069134717470 10.2966501423912 10.3812446192112 10.7849965648856 10.0188489157253 9.20592239934617 10.6048815843425 10.1901370992171 0.106255985800087 0.101573914424127 0.108869727978382 0.115062707558271 0.101166191880382 0.10685736504902 0.106349950836399 0.100399343437367 0.106555930243159 0.104002731102474 0.098786670382156 0.0995964352578018 0.0986600429423853 0.107366118113198 0.096513811545445 0.0983584778965076 0.117540092467416 0.100295931489476 0.101938803835762 3 3|0 -|/ 1764519 1765501 1764958.4 1764300 1767581 - gene protein_coding_gene FALSE TRUE AT3G05910.1 pectinacetylesterase, putative similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G26670.1); similar to Pectinacetylesterase [Medicago truncatula] (GB:ABD33181.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.148085099338398 -2.00816344303553 0.0778122827268055 1 2.47632318759714 19.4405830130352 -0.148085099338398 0.0424839179719398
AT2G44950_at 4.68423928017361 4.92121618423807 5.33402324762485 4.91220992783437 5.45237924163857 5.33544839152424 5.19239102249022 4.83612310743973 4.02273869418938 4.23807249602023 4.47325675603426 4.22501084405561 4.34656125157878 4.29833707451095 4.38103738938834 4.64158138331325 4.24893695746241 4.25972289596307 4.66736421276526 0.155349037397056 0.152999362012267 0.156001933114298 0.157552694990193 0.155450353627188 0.158074779236405 0.150889027790898 0.15157010861955 0.160902996913834 0.157830737911876 0.157649802196423 0.153005518516681 0.157520686473005 0.153477492871177 0.153543869839515 0.152569167580277 0.164050112820481 0.156324992753049 0.158287767322204 2 2|0 -|/ 18549714 18554744 18551875.588 18549369 18555666 - gene protein_coding_gene FALSE TRUE AT2G44950.1 HUB1 (HISTONE MONO-UBIQUITINATION 1); protein binding / zinc ion binding The gene encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. similar to HUB2 (HISTONE MONO-UBIQUITINATION 2), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G55255.1); similar to OSJNBb0034G17.7 [Oryza sativa (japonica cultivar-group)] (GB:CAD41603.3); similar to Zinc finger, RING-type; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE92765.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.199968285808404 2.00751880075492 0.0778913926992468 1 2.47543176981378 9.41785248538543 0.199968285808404 0.105929271796711
AT1G02475_at 10.1953847653391 10.4185357630845 10.7462369660871 10.7006315438806 10.9837108795989 10.4704696178744 10.8609094560565 10.5258111825840 10.2865149974130 9.99786302140169 10.2672646085731 9.93067729757301 10.3114722423056 10.2985553070718 9.99776963136512 10.4838306662808 10.3579519523118 10.1965979070288 9.83819625102188 0.110151853123045 0.108774920594105 0.114457120652095 0.110586440946646 0.108434748139966 0.125600859146160 0.110389852426058 0.108955808347362 0.122416768426046 0.116237122258258 0.110811698721735 0.108434748139966 0.108434748139966 0.113501224761609 0.113952686852278 0.108434748139966 0.113163531323015 0.115482128059204 0.113638644328169 1 1|0 -|/ 514120 515241 514806.286 513843 515404 - gene protein_coding_gene FALSE TRUE AT1G02475.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01883.1); similar to Streptomyces cyclase/dehydrase [Medicago truncatula] (GB:ABE82400.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) 0.207379410856224 2.00701305541065 0.0779535115719616 1 2.47473247894205 20.7483977925678 0.207379410856224 0.113160240613929
AT4G10360_at 6.74657175978881 7.55782340543579 7.4042978782558 7.04042143320583 7.7355639646516 7.31177244011965 7.92975602548619 8.09303683088921 6.20093089835492 7.03664550907963 6.97046927815916 7.58991097228078 7.93289895853081 7.54657901731945 6.5220263809316 7.99680730163375 7.95999776343387 7.43340442444761 6.96743186600226 0.275113002245526 0.254718904772999 0.279595917236068 0.272899807602434 0.260588170297018 0.263128332553715 0.273085061539276 0.262898400058303 0.301758930016659 0.254561976953063 0.265198058896382 0.270161572965357 0.254561976953063 0.268976297379819 0.27685134673727 0.25728670064841 0.270719108374065 0.263197920913059 0.259142878460961 4 4|0 +|/ 6421052 6421997 6421585.222 6420451 6422376 + gene protein_coding_gene FALSE TRUE AT4G10360.1|AT4G10360.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G31300.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53332.1); similar to Os05g0485300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055873.1); similar to Os01g0817100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044622.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Protein of unknown function DUF887, TLC-like; (InterPro:IPR010283) 0.275112963969039 2.00674791203896 0.077986097233821 1 2.47436588757942 14.5919127271813 0.275112963969039 0.172777136536243
AT3G62650_at 10.7294125777276 10.9786850924734 10.9328854381072 10.9965364293901 11.4343347573309 11.5131767486490 10.2568546278687 10.4612933335414 10.6375248971627 10.2102175814611 10.2140399039916 9.84379225638011 10.4487301286567 10.3630085437986 9.4130367970607 10.3588737744905 10.1545794887707 10.2234303560879 10.4240702862937 0.0987218430131133 0.09220137670031 0.0998253233578423 0.0960654116678427 0.0960168730062646 0.0999061874777217 0.0956477990577146 0.0962144474303387 0.102981617227578 0.100076410200388 0.093863725548827 0.0970844389641452 0.09220137670031 0.0947223925081063 0.101685069807307 0.0934419462773357 0.103157849903032 0.100203701248847 0.0995823475666328 3 3 + 23179561 23179936 23179753.182 23179037 23180163 + gene protein_coding_gene FALSE TRUE AT3G62650.1|AT3G62650.2 binding similar to binding [Arabidopsis thaliana] (TAIR:AT2G47485.1); similar to At2g47485 [Medicago truncatula] (GB:ABE84411.1); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.158085376657631 2.00655286586895 0.0780100764443412 1 2.47409622279391 21.1885843728663 0.158085376657631 0.058481078038873
AT3G05100_at 6.31469519511303 6.46471743592766 6.06548332592698 6.28363405303859 6.83340153283588 6.71042288506324 7.36431478853836 7.30432563401266 6.90075594749106 6.0003519744197 6.29144920177155 6.56770747642578 6.52573804789058 6.2281337013352 6.43253722155676 6.50510111876156 6.47107863403216 6.43267347899336 6.14775027633719 0.227495882291435 0.212960023913222 0.2242738367677 0.226900372342536 0.219287185610129 0.214689841398127 0.211885730557099 0.223228697582076 0.222785124586257 0.2153072621219 0.230865576495586 0.224705480369007 0.213283936561407 0.217548343160831 0.222659892850663 0.215961268056559 0.212285567078742 0.217739103944161 0.217740397565504 3 3 + 1425135 1425500 1425305.727 1424099 1426006 + gene protein_coding_gene FALSE TRUE AT3G05100.1 similar to hypothetical protein WH5701_03239 [Synechococcus sp. WH 5701] (GB:ZP_01084496.1); similar to Os07g0667400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060575.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) -0.153297426750935 -2.00512634635187 0.0781856704477745 1 2.4721241957734 13.0583352360630 -0.153297426750935 0.0515746040816124
AT3G43610_at 5.06502938178051 5.45420485114413 4.24626144928002 3.79506223397532 5.19032846837246 5.36071078854515 5.54265353836754 5.22385901426428 5.63085900301909 5.05651833643450 5.54299160534603 6.01025224222257 4.99448857288023 5.58735950143592 6.09508537653377 5.18811578580055 4.90167597236507 5.30231866401486 4.94051824178219 0.208694858498927 0.202669358113483 0.210183917015856 0.211131159318864 0.208444318183186 0.223164682143404 0.220303877647781 0.2053121281048 0.206882771518339 0.202650002176429 0.204003918290730 0.202308487905370 0.210485677094618 0.203958635772742 0.205046541092785 0.202308487905370 0.209656057859638 0.202308487905370 0.216123063016521 3 3|0 -|/ 15528770 15530542 15529503.75 15528760 15534915 - gene protein_coding_gene FALSE TRUE AT3G43610.1 tubulin family protein similar to SPC98 (SPINDLE POLE BODY COMPONENT 98) [Arabidopsis thaliana] (TAIR:AT5G06680.1); similar to OSJNBa0005N02.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD41288.2); similar to tubulin family protein, related [Solanum demissum] (GB:AAK91898.2); contains InterPro domain Spc97/Spc98; (InterPro:IPR007259) -0.214929261674798 -2.00375610641082 0.0783546951409262 1 2.47023035937226 10.3158059617929 -0.214929261674798 0.120605364949031
AT2G29450_at 10.0943001198835 10.2254474786490 9.76480833166666 9.78740625135534 10.4658654519528 10.0292990686401 11.1598475666299 10.8612382716988 9.77168086629676 10.2147314835831 10.2794861608363 9.9771677157164 10.1237160971626 10.0394268888084 10.0199922272330 10.3330144596802 10.4192067309977 10.2484499647478 9.96279138534436 0.101071544092437 0.100369630809977 0.101721727627733 0.101521428692669 0.100005508185215 0.109833350758039 0.101329682113511 0.100335693584964 0.114255693228827 0.100501435013191 0.101351433054302 0.0999575015535082 0.103340509576314 0.102648994281107 0.105028664894988 0.0994187967055382 0.105432186715842 0.0994187967055382 0.103201009234864 2 2 - 12631908 12632540 12632313.909 12631663 12632712 - gene protein_coding_gene FALSE TRUE AT2G29450.1 ATGSTU5 (Arabidopsis thaliana Glutathione S-transferase (class tau) 5); glutathione transferase Encodes a member of the TAU glutathione S-transferase gene family. Gene expression is induced by exposure to auxin, pathogen and herbicides. Naming convention according to Wagner et al. (2002) Identical to Glutathione S-transferase 103-1A (EC 2.5.1.18) (103-1A) [Arabidopsis Thaliana] (GB:P46421); similar to ATGSTU6 (GLUTATHIONE S-TRANSFERASE 24), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29440.1); similar to glutathione S-transferase GST 13 [Glycine max] (GB:AAG34803.1); similar to glutathione S-transferase [Euphorbia esula] (GB:AAF64450.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, omega-class; (InterPro:IPR005442) -0.188186982202597 -2.00371159367384 0.078360191864036 1 2.47016884382860 20.3800892887541 -0.188186982202597 0.0943851009777898
AT1G44170_at 8.02552326862177 8.19478510422085 7.51496159704794 7.77774120335431 7.9604527751981 6.99604192702412 8.77726184562036 8.74275299663576 8.25248894625458 8.14962235247192 8.69831894922138 8.49498314199887 7.98308708790071 8.72947407929576 8.39853284621262 8.44545272010118 7.6343667186407 8.57518780737992 7.75745201955428 0.17667707756846 0.171362681283652 0.194478058493675 0.173663487327882 0.175473666016822 0.197128695960415 0.170028393600708 0.175394923388052 0.173300132695775 0.179307061913805 0.175524235836218 0.173543502017845 0.181606998330678 0.182218068349009 0.180018250968878 0.174337827394519 0.186327333516025 0.179927476198415 0.178961580503065 1 1|0 -|/ 16799005 16799779 16799383.667 16798840 16802761 - gene protein_coding_gene FALSE TRUE AT1G44170.1|AT1G44170.2|AT1G44170.3 ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD)|ALDH3H1 (ALDEHYDE DEHYDROGENASE 4); 3-chloroallyl aldehyde dehydrogenase|ALDH3H1 (ALDEHYDE DEHYDROGENASE 4) Encodes a protein similar to the aldehyde dehydrogenase cp-ADH from C.plantagineum. Constitutively expressed at low levels. Identical to Aldehyde dehydrogenase 3H1 (EC 1.2.1.3) (AtALDH4) (ALDH3H1) [Arabidopsis Thaliana] (GB:Q70DU8;GB:Q8LFT7;GB:Q9C6Y7); similar to ALDH3I1 (Aldehyde dehydrogenase 3I1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT4G34240.1); similar to Aldehyde dehydrogenase (Cp-ALDH) (GB:Q8VXQ2); contains InterPro domain Aldehyde dehydrogenase NAD(P)-dependent; (InterPro:IPR012394); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086)|Identical to Aldehyde dehydrogenase 3H1 (EC 1.2.1.3) (AtALDH4) (ALDH3H1) [Arabidopsis Thaliana] (GB:Q70DU8;GB:Q8LFT7;GB:Q9C6Y7); similar to ALDH3I1 (Aldehyde dehydrogenase 3I1), 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) [Arabidopsis thaliana] (TAIR:AT4G34240.1); similar to Os11g0186200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065921.1); similar to aldehyde dehydrogenase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96616.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.278021891017469 -2.00364502463123 0.0783684129363192 1 2.47007684774896 16.2102466855175 -0.278021891017469 0.175544473716851
AT2G42760_at 6.07821939508466 6.39600351310241 6.78007680051091 6.7977814936451 6.00095318878159 5.32160141016579 6.76594579472411 7.42921742694051 5.85751617699084 7.27123288272523 6.42389261998240 6.50008399412029 6.41109617429121 6.92156833135634 5.82483882711543 7.13234006809733 6.49137270387966 6.43359642776212 6.74661463879742 0.207082608545498 0.207020520175707 0.208952409217514 0.208683351677151 0.203574033414848 0.209914706308485 0.213047332939768 0.206871889658385 0.251336769211033 0.211187157594256 0.210200013738339 0.208633196077664 0.203477170752823 0.208539966270653 0.222223370191148 0.203477170752823 0.212655743034660 0.203477170752823 0.210823554282074 2 2 - 17803479 17803992 17803752.636 17803061 17804308 - gene protein_coding_gene FALSE TRUE AT2G42760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G31560.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80754.1) -0.275007949349654 -2.00146623022987 0.0786379460945788 1 2.46706632980681 13.0174598159511 -0.275007949349654 0.173292303629257
AT1G01960_at 8.30266751954781 8.36482624202412 8.12117024178466 8.20127382226113 8.53312518499703 8.08271464678292 8.03466068930326 8.04830893318471 8.39001002762247 8.18144468933134 8.59913806416149 8.7776838442154 8.62018004880384 8.48569506023483 8.63033433270088 8.46522718929873 8.49316307240047 8.60066370425628 8.27356271136254 0.119385780306092 0.119385780306092 0.120353827111929 0.122859658804481 0.120552539578842 0.126205309500017 0.121875475056859 0.134760133460618 0.132299232821438 0.122473496621231 0.119385780306092 0.122340228094222 0.119385780306092 0.124893265998824 0.122348840451691 0.124473879647783 0.127541977870897 0.123439689343108 0.124117529214082 1 1 - 330846 331347 331156.727 330588 337582 - gene protein_coding_gene FALSE TRUE AT1G01960.1 EDA10 (embryo sac development arrest 10); guanyl-nucleotide exchange factor similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT3G60860.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G35380.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain SEC7-like; (InterPro:IPR000904) 0.174646658172500 2.00058401229559 0.0787473366285505 1 2.46584761407885 16.6439349802929 0.174646658172500 0.079931065769601
AT1G60950_at 13.3445691439582 13.5397239788280 13.3201037821856 13.3177232461344 12.9762561922367 12.7887656961372 13.9243294591925 13.9819730453148 13.7472890575053 13.9325379792877 14.3775378245136 14.4370398758396 13.8775320294900 13.9461668305338 14.2907647252866 13.7631479087259 13.6508694245791 14.3107453359896 13.6780534237261 0.0664668718267944 0.0647248233246898 0.0656930974473047 0.0655850111126314 0.0656577734053776 0.0650296118973994 0.0655188620144565 0.0647248233246898 0.0680860605640788 0.0662657211221091 0.0663482337704658 0.0647649467582632 0.0647248233246898 0.0692304063211406 0.0659921689516571 0.0647248233246898 0.0682254546416159 0.0661659177326938 0.0647248233246898 1 1 + 22448254 22448595 22448443.364 22448185 22448826 + gene protein_coding_gene FALSE TRUE AT1G60950.1 FED A (FERREDOXIN 2); electron carrier/ iron ion binding encodes a ferredoxin gene Identical to Ferredoxin-1, chloroplast precursor (PETF1) [Arabidopsis Thaliana] (GB:P16972); similar to ATFD1 (FERREDOXIN 1), electron carrier/ iron ion binding [Arabidopsis thaliana] (TAIR:AT1G10960.1); similar to chloroplast ferredoxin I [Nicotiana tabacum] (GB:AAS58496.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Ferredoxin [2Fe-2S], plant; (InterPro:IPR010241); contains InterPro domain Ferredoxin; (InterPro:IPR001041); contains InterPro domain 2Fe-2S ferredoxin subdomain; (InterPro:IPR006057) -0.150585668393247 -1.99977642741838 0.0788476014083478 1 2.46473213810521 27.3330233919365 -0.150585668393247 0.0478853686347882
AT1G30510_at 5.58071514240606 5.51084128925148 5.7181833112027 5.9894174415442 5.50588203004582 5.1557048136873 6.49738870239453 6.62570092592138 4.77587567106215 5.28567231823517 6.38815661990525 6.40939511590035 6.01080117917028 6.4804842022829 5.60533775538780 5.76616282789233 5.9686669389187 6.4966681881978 5.92502688428158 0.198736898581132 0.190900876764284 0.193367623037005 0.198868018159418 0.196986045474332 0.194038713515179 0.206373963328282 0.189467998528523 0.219825454098383 0.195338326257472 0.189467998528523 0.192913035634537 0.197942164618580 0.199837942494686 0.196716902506955 0.197446380697813 0.197235220475809 0.199317783923897 0.191348866802040 1 1 - 10807133 10807761 10807430.636 10806967 10809170 - gene protein_coding_gene FALSE TRUE AT1G30510.1|AT1G30510.2|AT1G30510.3 ATRFNR2 (ROOT FNR 2); oxidoreductase Encodes a root-type ferredoxin:NADP(H) oxidoreductase. similar to ATRFNR1 (ROOT FNR 1), oxidoreductase [Arabidopsis thaliana] (TAIR:AT4G05390.1); similar to ferredoxin-NADP reductase (EC 1.18.1.2) - garden pea (fragment) (GB:T06773); similar to Ferredoxin--NADP reductase, root isozyme, chloroplast precursor (FNR) (GB:Q41014); contains InterPro domain Ferredoxin--NADP reductase; (InterPro:IPR012146); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.175243098195300 1.99956912505961 0.0788733586030912 1 2.46444582349214 11.5577629043816 0.175243098195300 0.0807144499171995
AT1G19710_at 5.2866243505488 5.84823283315103 5.06276966451006 4.85415568908023 5.3437055123623 4.37223997175891 5.17846296471703 5.55830473299167 5.50519875869265 5.4733916518248 5.78831833432043 5.76015754772186 5.12777918514233 5.71261806886877 5.38794744567965 4.99707178680577 5.15973310929737 5.19017260621545 5.41852878811675 0.232016248592508 0.224238071843368 0.216054080983602 0.225203809688135 0.222011834023629 0.230936204978856 0.232520071177613 0.212022565232215 0.229204374528677 0.214374650913829 0.214678384242706 0.224096639665075 0.217742320734843 0.216850774335012 0.213130683687097 0.215264542703768 0.230887010364494 0.227151442922636 0.228145203066048 1 1 + 6816118 6816673 6816443.545 6814784 6816867 + gene protein_coding_gene FALSE TRUE AT1G19710.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G75420.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Putative first mannosyl transferase, WbaZ [Burkholderia xenovorans LB400] (GB:YP_558793.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.317460074981267 -1.99921870277381 0.0789169167741561 1 2.46396185959898 10.6161525449156 -0.317460074981267 0.208166054858308
AT3G03490_at 6.6759036110823 7.10214456041941 7.01094243081523 7.14575624516662 6.90820819950443 6.52779029876382 6.45804293492859 6.61128390742228 6.6059510975296 7.03237772022172 6.45938199828335 6.46711486267309 6.42541169538212 6.31241130600538 5.61774038913634 6.48262373502773 6.12685409879345 5.86962444837377 6.76796776788632 0.142785022698683 0.137611076907487 0.149769515104055 0.146337723581413 0.139673120178633 0.145788347146886 0.140346633914471 0.141428191645575 0.147482016510708 0.141920329374666 0.138160362392028 0.13861305739523 0.142935689657031 0.143343734556998 0.154755393169439 0.137611076907487 0.146766936399584 0.151835458155989 0.143956868741579 3 3|0 -|/ 830313 831160 830626.3 830172 831895 - gene protein_coding_gene FALSE TRUE AT3G03490.1 peroxisomal protein PEX19 family protein similar to peroxisomal protein PEX19 family protein [Arabidopsis thaliana] (TAIR:AT5G17550.1); similar to Pex19 protein [Medicago truncatula] (GB:ABE80886.1); contains InterPro domain Pex19 protein; (InterPro:IPR006708) -0.197811502535217 -1.99539373370782 0.0793938752639678 1 2.45868088849735 13.3161311128071 -0.197811502535217 0.104988242053655
AT2G30960_at 5.3893635994345 5.05693266531281 5.37678268579559 4.70551752478167 5.22849682815487 5.12121165307235 5.33812931535315 5.25070191482181 5.96076702531733 5.71709259367159 5.30595016556881 5.47639884919827 5.27590277688174 5.2926900057732 5.31478343258789 5.4702660691364 5.15941455892314 5.51381683462488 5.28005410018815 0.198106196054657 0.194172398256928 0.194082371782391 0.205932268695579 0.210172051462315 0.201383140420262 0.212792389031546 0.200569018227080 0.19901191318604 0.200432413570018 0.193857627416550 0.196826589490262 0.201638819794869 0.197838674924831 0.192753953076443 0.192753953076443 0.198795657176394 0.193753365090291 0.196840160503149 2 2 - 13184684 13185112 13184914.545 13184256 13185405 - gene protein_coding_gene FALSE TRUE AT2G30960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06420.1); similar to Putative positive regulator of mannosylphosphate transferase (Mnn6p), involved in mannosylphosphorylation of N-linked oligosaccharides; expression increases in late-logarithmic and stationary growth phases; Mnn4p [Saccharomyces cerevisiae] (GB:NP_012721.1); similar to MNN4 [Saccharomyces cerevisiae] (GB:CAA82046.1) -0.226132385292505 -1.99453940123490 0.0795007853075938 1 2.45750176172715 10.6852873948304 -0.226132385292505 0.131824144690162
AT2G21120_at 8.08828405266918 8.415253077287 8.61419881809098 8.65714183689095 8.84020186755748 8.54588009736588 8.21258648671921 8.49301695358636 7.90230352693264 7.82273033433168 8.20927720993287 7.94586110419958 8.30480023729504 8.08783136443613 7.24696422693184 7.94051334581873 7.8773893659204 7.76515128997707 8.02599469286147 0.177150727887247 0.161140441831692 0.174211049598513 0.165684982617962 0.161520283942998 0.166155085460073 0.164684500316650 0.163135421047372 0.184563074125327 0.173243699878201 0.168092636747546 0.164388387445712 0.161690580129052 0.176453861475454 0.175431873199828 0.164984050458432 0.176457093703019 0.168448593115524 0.164147237108002 2 0|2 /|- 9059417 9060319 9059870.4 9058829 9061694 - gene protein_coding_gene FALSE TRUE AT2G21120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38730.1); similar to Os06g0715700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058587.1); similar to Os05g0430700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055625.1); similar to Protein of unknown function DUF803 [Medicago truncatula] (GB:ABE83665.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.183642256216455 1.99347688435104 0.0796339404325838 1 2.45603551589356 16.4029369168238 0.183642256216455 0.0905886862073794
AT1G13690_at 7.96442867202513 8.06442973681699 7.66716887419125 7.69285151634138 7.79106050045947 7.95527053855424 7.92380680998598 7.95686070634052 7.22504714088044 7.43952658226064 7.25450221674629 7.55304194672052 7.40117748223711 7.24356200252511 7.41577868947333 7.2464438961569 7.46991030082811 7.2630863441898 7.6573258516202 0.151074052360543 0.151517716700954 0.151413096217735 0.149894123155623 0.157288551228473 0.158074716326568 0.151027345589430 0.151437852892516 0.161839075363118 0.150540065206817 0.148217853893364 0.147241939187629 0.150345537883469 0.161637422294141 0.148843943608051 0.147533233752199 0.155325942497323 0.153429591039792 0.147939482429160 1 1|0 +|/ 4693598 4694152 4693895.8 4693286 4694405 + gene protein_coding_gene FALSE TRUE AT1G13690.1 ATE1 (ATPase E1); nucleic acid binding AtE1 - stimulates the ATPase activity of DnaK/DnaJ similar to GR-RBP3 (glycine-rich RNA-binding protein 3), RNA binding [Arabidopsis thaliana] (TAIR:AT5G61030.1); similar to putative peptidyl-prolyl cis-trans isomerase [Oryza sativa (japonica cultivar-group)] (GB:AAP12903.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.142744477816507 -1.99287893616719 0.0797089698541562 1 2.45521046612358 15.2752701950627 -0.142744477816507 0.0340514714195099
AT2G42320_at 8.87935359672464 8.88719806387803 8.41590379708105 8.58611374456576 9.29258937930358 9.14474611394692 9.54844339202224 9.3813765269914 9.60285492809447 9.62630318126526 9.98217856797167 9.62171642388494 9.44271090579106 9.74540430493028 9.6929394835120 9.31986918388443 9.11665387001473 9.68899910515892 9.45984537076294 0.0986059113592002 0.0969761329410475 0.102494812778193 0.106786582567318 0.0969761329410475 0.102906213768073 0.097823392085581 0.0987022192920683 0.103492872807018 0.0998127619610275 0.0969761329410475 0.0969761329410475 0.104553103304397 0.0985023230163142 0.100273505775417 0.0978631947308597 0.103992343373731 0.100941415993383 0.101087263694108 2 2|0 +|/ 17636980 17637707 17637395 17634420 17637875 + gene protein_coding_gene FALSE TRUE AT2G42320.1|AT2G42320.2 nucleolar protein gar2-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G57780.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94664.1); similar to hypothetical protein [Nicotiana tabacum] (GB:BAC53933.1) -0.150473407788569 -1.99269144945122 0.079732509330218 1 2.45495178701625 18.5866206471564 -0.150473407788569 0.0485793540971772
AT1G02500_at 11.092387520098 11.3031782671281 11.3143855041735 11.5291149175007 11.1608276864984 11.2902003708363 10.7623702202001 11.0801270547214 11.2160046152101 10.9938678283300 11.3148502741957 11.2563614226976 11.1956027281236 11.1121302883647 11.0822875420729 11.2093947173259 11.1432817470890 11.1583702037516 11.0971134520037 0.0791169532439368 0.0755773320406388 0.0783788332709256 0.0821262799150358 0.0766723213580592 0.0807397835930207 0.0755773320406388 0.0771455208759765 0.0813080485749778 0.0821743352986291 0.0808980300984921 0.0770601742746791 0.0789775190610288 0.0791766713116916 0.0755773320406388 0.0760605977263541 0.0772470291608726 0.0778347004383977 0.0797242654577568 1 1 + 519649 520169 519849.182 518251 520437 + gene protein_coding_gene FALSE TRUE AT1G02500.1|AT1G02500.2 SAM1 (S-adenosylmethionine synthetase 1); methionine adenosyltransferase encodes a S-adenosylmethionine synthetase. SAM1 is regulated by protein S-nitrosylation. The covalent binding of nitric oxide (NO) to the Cys114 residue inhibits the enzyme activity. Identical to S-adenosylmethionine synthetase 1 (EC 2.5.1.6) (Methionine adenosyltransferase 1) (AdoMet synthetase 1) (SAM1) [Arabidopsis Thaliana] (GB:P23686;GB:Q941A8;GB:Q9FEE0); similar to MTO3 (S-adenosylmethionine synthase 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT3G17390.1); similar to MAT2/SAM-2 (S-adenosylmethionine synthetase 2) [Arabidopsis thaliana] (TAIR:AT4G01850.2); similar to MAT3 (METHIONINE ADENOSYLTRANSFERASE 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT2G36880.1); similar to S-adenosylmethionine synthetase (GB:AAA32868.1); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71235.1); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71233.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) 0.172911293910019 1.99020344005043 0.0800455192570857 1 2.45151972624236 22.3347556912948 0.172911293910019 0.0789721372471415
AT3G16480_at 5.87021096911126 6.22705467781726 5.30717751658931 5.45422168733008 5.57826724381771 4.79131260215281 6.18137632136834 6.51115750863935 4.95622993379789 5.51679902843498 5.91655134780802 6.49828107669982 5.53701255964978 5.87378030345499 6.02089335639672 5.84020129417709 5.31176843165705 5.30789146854398 5.70695186654277 0.24102839990247 0.230870252233135 0.229592963620748 0.2325896524625 0.227895076222322 0.232588153344103 0.228417758014568 0.226247683420344 0.232506362123478 0.230266374313934 0.227383293680438 0.225450189466996 0.228187546261035 0.227218133780851 0.237007060461325 0.225450189466996 0.237637671849063 0.228544272448735 0.225652581303696 3 0|3 /|+ 5601485 5602680 5601978.429 5599784 5602992 + gene protein_coding_gene FALSE TRUE AT3G16480.1 MPPALPHA (mitochondrial processing peptidase alpha subunit); metalloendopeptidase Identical to Probable mitochondrial-processing peptidase alpha subunit 2, mitochondrial precursor (EC 3.4.24.64) (Alpha-MPP 2) [Arabidopsis Thaliana] (GB:O04308;GB:Q94C54); similar to mitochondrial processing peptidase alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G51980.1); similar to Mitochondrial-processing peptidase alpha subunit, mitochondrial precursor (Alpha-MPP) (Ubiquinol-cytochrome-c reductase subunit II) (GB:P29677); similar to Os05g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056089.1); similar to Os01g0739000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044193.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) -0.259867284944179 -1.98804630891874 0.0803178578490651 1 2.44854514140632 11.3309095272151 -0.259867284944179 0.162063882652852
AT1G66970_at 11.6071369877735 11.9329124699434 11.4883228342808 11.5555093723123 11.2556731091970 11.0989709480602 11.3065796842627 11.3796765786961 11.9624869562177 11.3713993110786 11.6198338029122 11.7913021496731 11.3024145366633 11.5018003110812 11.3725335267475 11.4034162272392 11.205537073481 11.8861687496966 11.5440948240037 0.0726538235327655 0.0665765458918807 0.069846636003743 0.0683839921195517 0.0682051888582833 0.0675851506179906 0.0680670417093829 0.0691683491499295 0.0854653402029681 0.0709653641855895 0.068209599025822 0.0665765458918807 0.0683539514942948 0.0700559524734965 0.0699257413150308 0.0673643298658778 0.0696505488730963 0.0700638489127152 0.071824790779522 1 1 - 24996449 24997001 24996707 24996216 24999780 - gene protein_coding_gene FALSE TRUE AT1G66970.1 glycerophosphoryl diester phosphodiesterase family protein Identical to Probable glycerophosphoryl diester phosphodiesterase 3 precursor (EC 3.1.4.46) (GPDL3) [Arabidopsis Thaliana] (GB:Q7Y208;GB:Q9FZI1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66980.1); similar to MRH5/SHV3 (morphogenesis of root hair 5), glycerophosphodiester phosphodiesterase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26690.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); similar to B0806H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67272.1); similar to Os04g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053060.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) -0.161287632059793 -1.98791847818317 0.0803340244406497 1 2.44836889936537 23.0212824952091 -0.161287632059793 0.0648764414178237
AT4G19530_at 8.30966246412776 8.66808092439959 8.54377788908003 8.50516544759653 8.99815653182195 9.04805649742464 9.94247176902348 9.78635341845904 9.52523610350816 9.82852970066174 10.4247184607378 9.9963536460897 9.89642410505824 10.0359794303011 9.67296346038346 9.66567248852643 9.21131172229112 9.79029549301514 9.9316314564381 0.150846699966100 0.144340060944347 0.146777257443282 0.153077217232151 0.139164068118515 0.140221136504883 0.140633955116790 0.139855310547715 0.148459673983525 0.145434487873953 0.143420003553563 0.139344766289282 0.138869092049220 0.145361363456581 0.140005053791535 0.139431468156800 0.147994807445938 0.142235707425613 0.144904194678758 4 4 + 10656505 10656991 10656741.364 10651754 10657292 + gene protein_coding_gene FALSE TRUE AT4G19530.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G51570.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45060.1); similar to TIR-NBS-LRR type disease resistance protein [Populus trichocarpa] (GB:ABF81419.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.163968644295317 -1.98624652060696 0.0805457628914793 1 2.44606406470378 18.7744725865765 -0.163968644295317 0.0685300094200513
AT4G19450_at 7.57850505469472 7.68724250225646 7.67788681252753 7.52162399235921 7.82437080842617 7.522871184268 8.3147178033569 8.24431618187513 6.32753399726226 6.58813763694043 6.62894487053487 6.00153126880218 7.07339848468903 6.46052446132761 5.37527901561048 6.97904943503583 7.30318274113325 6.40535696295745 6.66868925294593 0.237070623093089 0.227790915266353 0.229453108147936 0.23477912452599 0.230524141831204 0.234690006778138 0.235817170933972 0.238136785163569 0.252015200777726 0.23189374389504 0.228603547160999 0.240590835013646 0.246935075021999 0.230075218190467 0.231760636934742 0.228387753059317 0.246428142421454 0.243700572021566 0.237230045294001 4 4 + 10608605 10609135 10608902.091 10606464 10609346 + gene protein_coding_gene FALSE TRUE AT4G19450.1 nodulin-related similar to NFD4 (NUCLEAR FUSION DEFECTIVE 4) [Arabidopsis thaliana] (TAIR:AT1G31470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45275.1); similar to Nodulin-like; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE77921.1); similar to Os11g0107400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065544.1); similar to Os12g0106500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065940.1); contains InterPro domain Nodulin-like; (InterPro:IPR010658) -0.15960953842772 -1.98547721346913 0.0806433687567573 1 2.44500375398158 14.3247061428343 -0.15960953842772 0.0628977676048703
AT3G59380_at 7.4663158498097 7.6742793876784 7.20820103754531 7.40765044381062 8.09121957186176 7.53926404121503 7.42654846439812 7.40356240857049 7.598694358912 7.14927392315622 6.87121391685293 6.9818205306225 6.34568126283592 7.185297548957 6.76859533445954 6.86890269204402 6.81339440548037 6.69961938869973 7.10712689753525 0.176132824622099 0.184021158166082 0.186432878787228 0.175901392660303 0.178853860268657 0.184345529492204 0.189423809119794 0.181176573179629 0.187637115905878 0.184585100754661 0.177580728085888 0.178339164388809 0.186458228486176 0.186333392507845 0.184194694508531 0.175901392660303 0.179936152305756 0.178853397834099 0.184413196578864 3 3 + 21956170 21956670 21956441.727 21955155 21956915 + gene protein_coding_gene FALSE TRUE AT3G59380.1 FTA (FARNESYLTRANSFERASE A); protein prenyltransferase Encodes the alpha-subunit shared between protein farnesyltransferase and protein geranylgeranyltransferase-I. Involved in protein prenylation: covalent attachment of the C-15 isoprene farnesyl or the C-20 isoprene geranylgeranyl groups to the C-terminal end of some proteins. Involved in shoot and flower meristem homeostasis, and response to ABA and drought. Also regulates leaf cell shape. Mutant is epistatic to era1. Identical to Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit (EC 2.5.1.58) (EC 2.5.1.59) (CAAX farnesyltransferase alpha subunit) (Ras proteins prenyltransferase alpha) (FTase-alpha) (Type I protein geranyl-geranyltransferase alpha subunit) (GGTase-I-alpha) (FTA) [Arabidopsis Thaliana] (GB:Q9LX33;GB:O65346); similar to protein binding / protein prenyltransferase [Arabidopsis thaliana] (TAIR:AT4G24490.2); similar to Protein prenyltransferase, alpha subunit [Medicago truncatula] (GB:ABE85981.1); contains InterPro domain Protein prenyltransferase, alpha subunit; (InterPro:IPR002088); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.199654422773245 -1.98515972333873 0.0806836834381899 1 2.44456620423977 14.5780538313754 -0.199654422773245 0.107824605614323
AT1G73170_at 9.22869082648503 9.15757315961415 9.2952897708262 9.22467028840726 9.60278258704595 9.35851168736577 9.65187185357073 9.6636794112191 9.39510154813785 9.8964860492181 9.63233200153913 9.5168625201676 9.51886266088891 9.43863793707943 9.2625189128866 9.80777190717586 9.52256323215592 9.42849047415186 9.98025238356997 0.0880038193359074 0.0835546516862764 0.0862738308165835 0.0867990165559015 0.0854834874199748 0.086661653177289 0.0878244466007196 0.0884882135635684 0.0939743142557748 0.0860479325530256 0.0869403722901084 0.0861590271116777 0.087199868451689 0.0888534657116695 0.087699932144788 0.0893127737806693 0.0892138490607368 0.093202025211499 0.0889992681399922 1 1 - 27515385 27516060 27515690.273 27515322 27518458 - gene protein_coding_gene FALSE TRUE AT1G73170.1|AT1G73170.2 ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase similar to sporulation protein-related [Arabidopsis thaliana] (TAIR:AT3G10420.2); similar to ATPase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79945.1); similar to Os07g0187400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059076.1); similar to Os06g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056852.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.148207633598632 -1.98502855440921 0.080700344830421 1 2.44438543970635 19.0345261727656 -0.148207633598632 0.0457377042303864
AT4G24490_at 5.04305935560784 5.3841500611268 5.30506545354648 5.36970514761088 5.7564028520276 5.03744432109722 4.99035529479322 4.8798358189562 4.53522526672203 4.4822229360952 4.68112740982144 5.04431050135286 4.42341713267602 4.66772171063707 4.80989263994377 4.54377062269361 4.29942998021678 4.80396906070214 4.43765494392533 0.210648556899316 0.222801825020494 0.217488312479044 0.210923864823312 0.209699093029945 0.219712242361260 0.208281856043192 0.216664367954771 0.216011445866426 0.211859402354610 0.206847354420703 0.203983031955728 0.20847666593068 0.205134621873050 0.208397392448965 0.201984964306848 0.227066277021822 0.216926995923299 0.205435821816821 4 4 - 12655464 12656196 12655809.273 12655069 12658346 - gene protein_coding_gene FALSE TRUE AT4G24490.1|AT4G24490.2 protein binding / protein prenyltransferase similar to geranylgeranyl transferase alpha subunit-related / RAB geranylgeranyltransferase alpha subunit-related [Arabidopsis thaliana] (TAIR:AT5G41820.1); similar to Rab geranylgeranyl transferase, a subunit [Rattus norve (GB:NP_113842.1); similar to Os06g0677500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058357.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein prenyltransferase, alpha subunit; (InterPro:IPR002088); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.233487405478735 1.98445052906632 0.080773806374472 1 2.44358890357938 9.79287192034727 0.233487405478735 0.139482175314846
AT3G20550_at 7.1585594005017 7.54833869925708 7.27086875064261 7.29928907385803 7.82012346052215 7.60965228793493 6.81923244526517 7.25558571611848 7.00415410418213 7.12458727735941 6.1564578553326 6.47813695182954 6.64658142930702 6.54086563584411 6.26516485828011 6.54650919310523 6.67162895870263 6.65623030162068 7.46646322291358 0.2052977479164 0.204909644007014 0.203316208054662 0.201170689739624 0.214462900146203 0.207487233610343 0.207906481345803 0.201170689739624 0.209561399134316 0.201369744600111 0.205774740167953 0.201170689739624 0.203765224502312 0.211580735631833 0.204743721340974 0.201170689739624 0.226166955769683 0.210372541396701 0.204295001897197 3 0|3 /|- 7174701 7176455 7175590.375 7174470 7177948 - gene protein_coding_gene FALSE TRUE AT3G20550.1 DDL (DAWDLE) mutant has Delayed growth, curly leaves, abnormal flowers; FHA Domain Protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24410.1); similar to Smad nuclear interacting protein [Danio rerio] (GB:NP_001020641.1); similar to Os05g0545600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056214.1); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) -0.199325154430907 -1.98296851663037 0.0809624496661289 1 2.44154696988386 14.1945054456731 -0.199325154430907 0.107717028281643
AT4G23050_at 7.42045778149082 7.2205140060789 7.53596679553699 7.4327921049778 7.59576579154221 7.39149906918342 7.1926298515946 7.09879089617332 6.82786781972638 7.00554189705552 7.04536833648804 6.67094748335882 6.93456083091408 7.02110005565744 6.423250695585 7.01945370225545 7.2647551383879 7.46186041188338 6.95199669339209 0.157499983746286 0.152218045357248 0.168012537378707 0.153637028830915 0.163915666447615 0.157438881235158 0.159119488058991 0.156650858149864 0.160315412414496 0.156785740379981 0.168531354279953 0.156906210919951 0.157586224174155 0.169266037059719 0.16469451130497 0.153511227724453 0.167334559635264 0.158808520186277 0.161524777303603 4 4|0 +|/ 12082773 12083676 12083241.2 12080071 12084267 + gene protein_coding_gene FALSE TRUE AT4G23050.1|AT4G23050.2 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67890.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06412.1); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G67890.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G06620.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06412.1); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.153800542450311 1.98210112620953 0.081073054779139 1 2.44035208581759 14.3153674796761 0.153800542450311 0.0550393205900802
AT3G22320_at 8.64820822917589 8.9008151057924 9.24974793099384 9.07814074220658 9.39369335852609 8.8058946597449 9.11994941935144 9.0581261671642 8.21434600594875 8.61320766715099 8.72322059143427 8.92107316618246 8.73847831690699 8.71470282063921 8.8315503966631 8.57441363190403 8.34387445962604 8.5618458366924 8.56018190091806 0.166008577423336 0.171038469013015 0.167901438836642 0.171406540562821 0.172471182322003 0.186207602835923 0.168469166237479 0.166539980184690 0.197871009031121 0.174540122611108 0.170818984511956 0.160574004638219 0.165458757580739 0.170092077749151 0.161640182440684 0.168970826082592 0.176811313443221 0.173404756306963 0.169786404410263 3 3|0 -|/ 7891064 7891993 7891390.667 7890871 7892354 - gene protein_coding_gene FALSE TRUE AT3G22320.1 ATRPABC24.3 ("Arabidopsis thaliana RNA polymerase I, II and III 24.3 kDa subunit"); DNA binding / DNA-directed RNA polymerase RNA polymerase I, II and III 24.3 kDa subunit (AtRPABC24.3) similar to eukaryotic rpb5 RNA polymerase subunit family protein [Arabidopsis thaliana] (TAIR:AT5G57980.1); similar to RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago truncatula] (GB:ABE89784.1); similar to RNA polymerase subunit, RPB5; RNA polymerase Rpb5, N-terminal [Medicago truncatula] (GB:ABE84760.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain RNA polymerase Rpb5, N-terminal; (InterPro:IPR005571) 0.206830410165166 1.98193510709783 0.0810942412086795 1 2.44012340244839 17.6011836652088 0.206830410165166 0.115128663201862
AT2G38140_at 9.44492486355417 9.56622333902215 8.65510006527571 8.72906456749388 9.30872269229554 9.3467571866658 9.32764575786892 9.45429442776014 10.3958609083018 10.0304500516441 10.4535904621699 10.6968520095667 9.7367222888873 10.2372833644770 10.8115134162049 10.4243895097570 9.77680247053008 10.0837334034861 9.94167276169698 0.117583978969322 0.115179065414784 0.117817808199142 0.122721883879401 0.118666954268758 0.119338871281486 0.119476622782595 0.118679419578329 0.117961414939975 0.111651284741317 0.110820119668205 0.113364487662922 0.111755555594515 0.115401976794213 0.118744552893618 0.114032730619829 0.112193629369337 0.115903781099949 0.110820119668205 2 0|2 /|+ 15988251 15988503 15988354.571 15987961 15988690 + gene protein_coding_gene FALSE TRUE AT2G38140.1 PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4); structural constituent of ribosome plastid-specific ribosomal protein 4 (PSRP4) mRNA, complete Identical to 30S ribosomal protein S31, chloroplast precursor (Plastid-specific 30S ribosomal protein 4) (PSRP-4) (RPS31) [Arabidopsis Thaliana] (GB:O80439); similar to 30S ribosomal protein S31, chloroplast precursor (Plastid-specific 30S ribosomal protein 4) (PSRP-4) (GB:P47910) -0.141705672015686 -1.98126064423407 0.0811803670624636 1 2.43919442253830 19.4292276655833 -0.141705672015686 0.0335880227673866
AT2G21210_at 9.32302448394837 9.55298476854894 9.88646717110878 9.90564603140057 10.8485423543592 10.5769499388282 10.6803253630629 10.7261010251318 10.6753326765124 10.6291245415904 11.0999423226502 10.8504811536743 10.8088970487923 10.7971620733113 10.7036805352471 10.8421430335108 10.7286086064984 10.6503456914338 10.8764695855996 0.110247296088091 0.108412237471146 0.119113150265318 0.115524420801005 0.105732099782866 0.108934950775779 0.108231859564438 0.108126104502580 0.115535241349401 0.104113542044347 0.106421500863198 0.104969368611353 0.103911975935002 0.107423391563266 0.104236188306456 0.103223552559284 0.104367561563217 0.103223552559284 0.103223552559284 2 2 - 9092617 9092857 9092757 9092291 9092990 - gene protein_coding_gene FALSE TRUE AT2G21210.1 auxin-responsive protein, putative Putative auxin-regulated protein whose expression is downregulated in response to chitin oligomers. similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G38840.1); similar to hypothetical protein [Malus x domestica] (GB:CAB07785.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.158487210328412 1.97805954140305 0.0815903322023828 1 2.43478666772072 20.9560717217356 0.158487210328412 0.0621811710505641
AT1G20220_at 6.95485462618261 7.04693523622919 6.88117012525467 6.67281897738256 6.87931004857062 6.7253869730868 7.3982095973323 7.24302781190185 6.80693585120609 6.90206289216386 6.97520497299136 7.2524812316783 6.89261821956836 6.87688822850711 7.39726409534676 6.6906448047241 6.86326244700042 6.60155496891445 6.92794547870622 0.182477521409424 0.194803898140568 0.192425682913246 0.189137183218963 0.190485919398297 0.199503554446919 0.194368926917918 0.195163479487462 0.189879644458905 0.187199253233145 0.183629573768370 0.188958108612140 0.185395396323645 0.196117050629235 0.191529375304847 0.183166411997725 0.182970913562604 0.185490379298039 0.192504879689965 1 0|1 /|- 7005088 7006144 7005480.889 7004870 7007642 - gene protein_coding_gene FALSE TRUE AT1G20220.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G76010.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71254.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775); contains InterPro domain Alba, DNA binding; (InterPro:IPR011574) -0.153163411552593 -1.97738376627568 0.08167713237333 1 2.43385644046895 13.8865748137176 -0.153163411552593 0.0546323293498336
AT1G75500_at 8.50805371382526 8.96917032938789 8.44313491216054 8.57173450987948 9.30484359065956 8.3972862356857 8.9363428255534 9.35974060133482 9.0658886654025 8.25909798536657 10.0011556375529 10.1431542970825 9.75285365648088 9.70022477486547 9.97103311846806 9.60171041383088 8.6717219554752 8.83021656945202 8.87089776999116 0.151188837091488 0.14327907844843 0.148457629824118 0.149169015764155 0.147569656672322 0.157552041023849 0.14327907844843 0.144160982094242 0.145819988831275 0.1533946201296 0.147033464548635 0.149640346288705 0.14525975991728 0.159350256719807 0.150050038175861 0.14327907844843 0.177892898309981 0.147274704244709 0.147517684140710 1 1 - 28342004 28342708 28342445 28341453 28343902 - gene protein_coding_gene FALSE TRUE AT1G75500.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT3G53210.1); similar to putative MtN21 [Oryza sativa (japonica cultivar-group)] (GB:BAD13218.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.293985136942613 1.97529808042535 0.0819455881551592 1 2.43098604265468 17.9692734780547 0.293985136942613 0.192090085854037
AT1G78920_at 9.29103072393774 9.17480638272516 9.26958795633088 9.259719829025 9.30948121479316 9.05567863420916 8.57193327391739 8.54480805638925 8.8932756201801 8.6608665555959 8.59600819339107 8.6810024728439 8.58680633015821 8.63650278393195 8.88803852673361 8.55716088190066 8.56994643120527 8.66446292709404 8.47750371298198 0.106230330673464 0.103712696785227 0.11697095459678 0.105540140536639 0.106911215904679 0.113136023971597 0.102926433394219 0.106983551443718 0.111142318726357 0.107170241553249 0.114202266819900 0.107291887816637 0.102817720651112 0.114004125466251 0.110298263116835 0.103654705084781 0.109016903979039 0.106849978596200 0.108661949838506 1 1 + 29680834 29681616 29681267.545 29676386 29681885 + gene protein_coding_gene FALSE TRUE AT1G78920.1 AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) vacuolar-type H+-translocating inorganic pyrophosphatase Identical to Pyrophosphate-energized membrane proton pump 2 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 2) (H(+)-PPase 2) (Vacuolar proton pyrophosphatase 2) (AVP1-like protein 1) (AVPL1) [Arabidopsis Thaliana] (GB:Q56ZN6;GB:Q9LDJ4;GB:Q9MB70;GB:Q9ZVB1); similar to vacuolar-type H+-translocating inorganic pyrophosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G16780.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51797.1); similar to vacuolar-type H+-translocating inorganic pyrophosphatase [Cyanidioschyzon merolae] (GB:BAE19660.1); similar to H+-translocating pyrophosphatase [Zea mays] (GB:ABK51382.1); contains InterPro domain Inorganic H+ pyrophosphatase; (InterPro:IPR004131) 0.149124035750921 1.97493292791183 0.0819926751881941 1 2.43048360268554 17.7219839412460 0.149124035750921 0.0485655043789787
AT3G05210_at 7.51896538826653 6.89987167511121 7.0855794274078 7.01646669535404 7.54963535594348 6.66412076305775 7.4497309582253 6.89185490820755 6.41801710678088 6.04398619547308 5.98045315612385 5.41957353292602 5.83723501358601 5.77710994949597 5.51773667572759 6.27210691899868 6.27315634098312 5.74549517882408 6.66381863672373 0.236403759790448 0.223747540783722 0.230085316630110 0.223747540783722 0.229784347934968 0.259817390790835 0.231106744846584 0.224113236357034 0.235320270854244 0.227938741436325 0.233834425138571 0.226396234351591 0.225113580933454 0.230932758515898 0.230395937038908 0.223747540783722 0.230860897140836 0.223747540783722 0.230623173240468 3 3|0 +|/ 1480874 1481704 1481410.375 1479544 1482048 + gene protein_coding_gene FALSE TRUE AT3G05210.1 ERCC1 (UV REPAIR DEFICIENT 7) encodes a homolog of human ERCC1 protein (yeast RAD10), which is a DNA repair endonuclease. Mutants are sensitive to UV-B and gamma radiation (G2 cell cycle phase arrest) and are defective in dark-repair of pyrimidine pyrimidone dimers. This protein incises the 5' end of damaged DNA, similar to ERCC1/RAD10. Identical to DNA excision repair protein ERCC-1 (EC 3.1.-.-) (AtERCC1) (AtRAD10) (Ultraviolet hypersensitive 7) (ERCC1) [Arabidopsis Thaliana] (GB:Q9MA98); similar to DNA repair protein rad10, putative [Medicago truncatula] (GB:ABE77985.1); contains InterPro domain RuvA domain 2-like; (InterPro:IPR010994); contains InterPro domain DNA repair protein rad10; (InterPro:IPR004579); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445) -0.316785402918973 -1.97470839489382 0.0820216419866901 1 2.43017466561958 13.2485943091929 -0.316785402918973 0.210772863733401
AT2G16480_at 4.61598762577411 4.97507214632351 4.80645770389653 5.2932333488083 5.19404499363334 5.11958479930746 4.93709500211417 4.66350175223034 4.43832386277784 5.19383912248433 4.90026490690018 5.11453872608591 5.30252612678869 4.9870998797771 4.82046409352301 5.26041071899495 5.17097029926212 4.26871280004491 4.9795264183232 0.203269752544696 0.200185104276269 0.199662839893369 0.20912426060661 0.197621401290295 0.205394865418634 0.19702378791461 0.194700661176768 0.210678984634901 0.199564446222479 0.197559911272764 0.202158391611863 0.199263504707245 0.204164314148790 0.204016654414734 0.2001843153566 0.213817815539029 0.194700661176768 0.196384330378545 2 2|0 -|/ 7147359 7148012 7147797.1 7147357 7148931 - gene protein_coding_gene FALSE TRUE AT2G16480.1 SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT3G51120.1); similar to Plus-3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54582.2); similar to Os10g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065041.1); contains InterPro domain Plus-3; (InterPro:IPR004343); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) 0.206488194597264 1.97387798352201 0.0821288579129934 1 2.42903218950389 9.87496546073625 0.206488194597264 0.115609039387525
AT2G32450_at 4.19459625014272 4.778521571213 3.81530249101643 4.28075056416361 5.247499983523 4.36710637181275 5.2404928292916 5.22578095713209 5.7377266054536 5.25553671870349 6.01032461644515 5.58127136971744 5.71285056831875 5.79590144526867 5.32062607821677 5.47570968072505 4.83439727907872 4.78576730366338 5.84740855625807 0.212872240352849 0.211449107650781 0.215363460249770 0.211957929763169 0.208230124268784 0.215759993871564 0.216994274802757 0.207248209975594 0.219588827488391 0.212813139572632 0.217077806822061 0.210021193738302 0.206449229912659 0.236849393048724 0.208965259539896 0.205654560852516 0.217173806615032 0.207860307894235 0.212326017422719 2 2 + 13787567 13787963 13787784.909 13785526 13788335 + gene protein_coding_gene FALSE TRUE AT2G32450.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G05150.1); similar to Os03g0263900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049638.1); similar to O-GlcNAc-transferase-like protein [Castanea sativa] (GB:AAL15891.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_4; (InterPro:IPR011717); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.303067150054194 -1.97327491342964 0.0822068056468193 1 2.42820258192709 10.1703380453624 -0.303067150054194 0.199795340997803
AT4G10925_at 5.27981687793946 5.11802854720605 5.31007471076521 5.17080601178968 5.95475918093171 6.12814809381763 4.97030915640749 4.81044198949581 4.48868779229229 4.53796711397374 4.37717790872975 3.9316889502437 4.38759304653285 5.08319001831725 4.00751776400566 4.46278009005908 5.45976398464024 4.03570310074031 5.24817298859028 0.222617671845697 0.232505615080613 0.229594850623556 0.223269277558813 0.224776430522372 0.244371232529865 0.228905812192952 0.229930188150236 0.241287010202816 0.227416372000403 0.234598496482112 0.224200801588573 0.223978034708702 0.234814556487698 0.228317146774921 0.226778797254080 0.234671054280190 0.225250056124166 0.228687300997778 4 4 - 6703006 6704136 6703567.727 6702739 6704618 - gene protein_coding_gene FALSE TRUE AT4G10925.1|AT4G10925.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G23960.1); similar to Os01g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043300.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19863.1); similar to Os01g0753200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044272.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.153099374760179 1.97297304072206 0.0822458498017126 1 2.42778734320459 9.95602448247448 0.153099374760179 0.0550500079805669
AT4G24470_at 8.79330411900002 9.02273798527298 9.16070182067816 9.20813390331433 9.02447693829951 9.14942570143457 8.64286332401036 8.67201768376546 8.28873483049129 8.17116069071519 8.31458634828162 8.02258289998615 8.00738668366006 7.791563949069 8.1536793787533 8.31493154061723 8.58618212807764 8.05203953852145 8.17968087317895 0.140316123811686 0.137188638061880 0.141993034588135 0.137188638061880 0.139324962533485 0.140842461347342 0.137188638061880 0.145060111713430 0.137288558976736 0.145024667905943 0.144376483429212 0.142962069774104 0.145036389608452 0.152060144442811 0.140734185524864 0.138840350348681 0.144444745583254 0.142362823346281 0.139465619896631 4 4|0 +|/ 12646297 12647693 12646988.6 12645552 12647975 + gene protein_coding_gene FALSE TRUE AT4G24470.1|AT4G24470.2 ZIM (ZINC-FINGER PROTEIN EXPRESSED IN INFLORESCENCE MERISTEM); transcription factor ZIM is a putative transcription factor containing an atypical GATA-type zinc-finger motif. Identical to GATA transcription factor 26 (Protein ZIM) (ZIM) [Arabidopsis Thaliana] (GB:Q9LRH6;GB:Q9STU8); similar to ZML2 (ZIM-LIKE 2), transcription factor [Arabidopsis thaliana] (TAIR:AT1G51600.2); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53990.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679); contains InterPro domain ZIM; (InterPro:IPR010399); contains InterPro domain CCT; (InterPro:IPR010402) 0.147565369914218 1.97264642358557 0.0822881144287265 1 2.42733808970491 17.1434882793882 0.147565369914218 0.0462259656840819
AT2G35510_at 7.61933525101195 7.40244617980957 7.82717944402595 7.55671501406576 7.81481556382992 7.47241013071576 7.25842220899394 6.75018162417293 5.8294456177069 6.56935704144101 6.43285924387847 6.4994837544229 6.35385471833617 6.32231178878081 6.48446729068207 6.53803309200568 6.45623841406572 6.20929575829772 6.79062914976507 0.180788795633471 0.184088052589467 0.183709577202100 0.180715806435997 0.183099033455984 0.192377925669735 0.180715806435997 0.184963616207992 0.210388365376177 0.183812282634582 0.188256968858493 0.187829749236456 0.186755843939702 0.192535654164324 0.183787277228192 0.181435669700267 0.198345343665770 0.196109926133653 0.189130280884087 2 2|0 -|/ 14924224 14924984 14924613.4 14923802 14927456 - gene protein_coding_gene FALSE TRUE AT2G35510.1 SRO1 (SIMILAR TO RCD ONE 1); NAD+ ADP-ribosyltransferase Encodes a WWE domain-containing protein with 76% similarity to RCD1. The protein also contains a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. similar to RCD1 (RADICAL-INDUCED CELL DEATH1) [Arabidopsis thaliana] (TAIR:AT1G32230.2); similar to Os10g0577800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065494.1); similar to putative CEO protein (alternative splicing products) [Oryza sativa (japonica cultivar-group)] (GB:AAO66528.1); contains InterPro domain WWE; (InterPro:IPR004170); contains InterPro domain PARP, catalytic; (InterPro:IPR012317); contains InterPro domain Poly(ADP-ribose) polymerase, catalytic region; (InterPro:IPR001290) 0.212887230041642 1.97247783677560 0.0823099379027752 1 2.42710621191646 13.8669608156764 0.212887230041642 0.121845950301894
AT2G31810_at 9.40076152136395 9.6287474099648 9.0041377607177 8.91596808107116 9.79417751793083 9.16692654325422 8.81070202654619 8.63908277067071 9.43544060280775 8.83814839809444 8.75202837227478 9.05453766453812 8.67678810977966 8.63164734462756 8.6039345427737 9.06217853110514 8.11810577199909 8.68844379263475 9.38997646889348 0.161429831790849 0.163491523200498 0.159461366705045 0.16334698660507 0.167715487434978 0.173359136313636 0.158488494750544 0.164580999537182 0.174383924671118 0.155944663662346 0.165103252667799 0.156833711287 0.159328009706751 0.174219401759561 0.175924290096359 0.155460741628872 0.205365191488385 0.168689656828925 0.155367009843139 2 2 + 13533509 13535298 13534398.2 13531298 13535634 + gene protein_coding_gene FALSE TRUE AT2G31810.1|AT2G31810.2|AT2G31810.3 acetolactate synthase small subunit, putative similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT5G16290.2); similar to acetolactate synthase, small subunit, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96859.1); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912)|similar to acetolactate synthase small subunit, putative [Arabidopsis thaliana] (TAIR:AT5G16290.2); similar to acetolactate synthase small subunit [Nicotiana plumba (GB:CAB56614.1); contains InterPro domain Acetolactate synthase, small subunit; (InterPro:IPR004789); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.211125715054111 -1.97202755707212 0.08236825358944 1 2.42648691810905 18.1298862070142 -0.211125715054111 0.120226097095334
AT4G28706_at 8.2693868943193 8.39129558885556 7.84852512233692 7.64676170996058 8.13369185345212 7.8968269749024 8.74133184354444 8.73880201703204 7.96735308501348 8.61213960530323 8.68326912312941 9.116219335716 8.29851735475192 8.64846930725186 8.615572542266 8.63715473656075 8.09872447492117 8.60905000012311 8.15351304904736 0.174609492912924 0.178542796665136 0.187918478469275 0.188956572148874 0.189098655725521 0.189105256312335 0.180937476128820 0.179863722144071 0.197325396266761 0.175702929481441 0.176454296874354 0.174609492912924 0.174609492912924 0.189139901735794 0.197896499781534 0.180669004472441 0.189605348107995 0.19055878845579 0.175676275082133 4 4|0 +|/ 14169390 14170585 14169809.75 14167740 14170807 + gene protein_coding_gene FALSE TRUE AT4G28706.1|AT4G28706.2|AT4G28706.3 pfkB-type carbohydrate kinase family protein similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT5G43910.2); similar to Os08g0566400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062541.1); similar to Carbohydrate kinase, PfkB [Medicago truncatula] (GB:ABE82653.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139)|similar to pfkB-type carbohydrate kinase family protein [Arabidopsis thaliana] (TAIR:AT5G43910.2); similar to Os08g0566400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062541.1); similar to Carbohydrate kinase, PfkB [Medicago truncatula] (GB:ABE82653.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Ribokinase; (InterPro:IPR002139) -0.154857903944744 -1.97129783253821 0.0824628442992608 1 2.42548338230725 16.6246814284478 -0.154857903944744 0.057832780531395
AT4G20110_at 8.84735096487881 9.18679926098618 9.6079262027294 9.85306722789566 8.99992240031482 8.59714128714524 6.4165980718058 6.34384579971925 7.13514457563253 6.5484047554206 4.6493974668916 3.65380031393425 5.93534737013425 5.99128346060897 3.62946175328027 6.27968635616777 7.4977356421048 6.59632139204062 6.45095854635473 0.205809243899211 0.205809243899211 0.205809243899211 0.212915528773532 0.205809243899211 0.210721906633502 0.215861923588549 0.215273571911297 0.213716464497134 0.207731253508446 0.217389784914613 0.210841903597916 0.220954618095048 0.220099615128684 0.222571383740251 0.208903262421567 0.224351720895082 0.209360350019037 0.208753827989853 4 4|0 +|/ 10877541 10878529 10878065.556 10875299 10878740 + gene protein_coding_gene FALSE TRUE AT4G20110.1 vacuolar sorting receptor, putative Identical to Vacuolar sorting receptor 7 precursor (AtVSR7) (Epidermal growth factor receptor-like protein 3) (AtELP3) (BP80-like protein f) (AtBP80f) (VSR7) [Arabidopsis Thaliana] (GB:Q8L7E3;GB:O49438); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT1G30900.1); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G34940.1); similar to VSR-2 (Vacuolar sorting receptor 2), calcium ion binding / peptidase [Arabidopsis thaliana] (TAIR:AT2G14720.2); similar to Vacuolar sorting receptor 1 precursor (BP-80) (80 kDa proaleurein-binding protein) (GB:P93484); similar to Putative vacuolar sorting receptor protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05373.1); similar to Vacuolar sorting receptor 6 precursor (AtVSR6) (Epidermal growth factor receptor-like protein 6) (AtELP6) (BP80-like protein d) (AtBP80d) (GB:Q9FYH7); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) 0.191746174383231 1.97059727226832 0.082553752583742 1 2.42452006282942 14.6018973245334 0.191746174383231 0.101328609414171
AT4G32160_at 5.35097037748893 6.04792720420318 6.22735123632385 6.15567042281146 6.22174895987352 6.18810597158602 5.50052283268328 5.52733723648027 5.09749658774355 5.35550027373055 5.21991355345787 5.1275340977358 5.19280841302849 5.02499567592304 5.07410759870111 5.60943663420251 5.11288086515337 5.20022401726394 5.63435776903 0.198960500643717 0.208393162343425 0.202775606837135 0.202113630257130 0.216759803775103 0.211128132526764 0.216299706912327 0.215690136892399 0.206565855086984 0.198676042801879 0.196416382492558 0.197760506554868 0.198979688027818 0.200992791789837 0.202273203756439 0.195543108299943 0.207741644976909 0.196791387600341 0.199169675370134 4 4|0 +|/ 15532039 15532799 15532442.9 15528811 15533106 + gene protein_coding_gene FALSE TRUE AT4G32160.1 phox (PX) domain-containing protein similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25350.1); similar to Phox-like [Medicago truncatula] (GB:ABE81779.1); contains InterPro domain Phox-like; (InterPro:IPR001683); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.212157899183346 1.96934531166580 0.082716452757209 1 2.42279879533538 11.1812988553986 0.212157899183346 0.121476216516244
AT3G51800_at 9.74354081656246 9.71071753761852 9.59760647985842 9.56874407364534 9.46334888397459 9.28277270127284 10.0848733074699 10.0129806941956 9.13816026974106 9.38969665688632 9.27721292941995 9.71320116719113 9.2320110582776 9.27517190581896 9.97524064441767 9.14090447214188 9.09178285890566 9.1416382198611 9.15606752298232 0.085370048163169 0.0837482357044208 0.0837482357044208 0.0839195898950103 0.087179757101595 0.0844254189092519 0.0846789595378282 0.0871681537180086 0.0912985140814877 0.0868882419453851 0.0861837730919831 0.0839927982584442 0.0874000486534326 0.0844677137121546 0.086610939709456 0.0837482357044208 0.0893185531721282 0.0870647615233936 0.0893358347153424 3 3|0 -|/ 19222255 19223144 19222639.556 19222004 19224686 - gene protein_coding_gene FALSE TRUE AT3G51800.1|AT3G51800.2 ATG2 (G2p-related protein); metalloexopeptidase putative nuclear DNA-binding protein G2p (AtG2) mRNA, similar to MAP2A (METHIONINE AMINOPEPTIDASE 2A), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT2G44180.1); similar to cold-induced cell cycle-related nuclear protein [Ammopiptanthus mongolicus] (GB:ABF66654.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Proliferation-associated protein 1; (InterPro:IPR004545); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) -0.140994731903080 -1.96580346128283 0.0831784051352483 1 2.41793111035449 18.9750081735951 -0.140994731903080 0.0344751263352481
AT1G53840_at 9.11847916060329 9.20073865461263 8.11801114688238 8.24457081922657 9.03061171560614 8.75125591844481 9.40284739359474 9.09235329049731 8.75031451662409 8.51784476890974 9.08740447838851 9.22479293572933 9.21973426359757 9.00895830447418 9.16034137687404 9.16089916219012 8.565989667689 8.98337384448016 8.8963030603629 0.133446369324609 0.130288460102044 0.144038428654415 0.140334107863461 0.130350518871917 0.140994206732082 0.139224069008936 0.137648700746163 0.154036258475538 0.134719880501595 0.130466007657411 0.131579087866066 0.137410606780161 0.129005759042898 0.134503256283978 0.130046932954553 0.159296198609302 0.141731821517020 0.127819406788518 1 1 + 20106534 20107063 20106784.545 20105113 20107335 + gene protein_coding_gene FALSE TRUE AT1G53840.1 ATPME1 (Arabidopsis thaliana pectin methylesterase 1); pectinesterase encodes a pectin methylesterase Identical to Pectinesterase-1 precursor (EC 3.1.1.11) (Pectin methylesterase 1) (PE 1) (PME1) [Arabidopsis Thaliana] (GB:Q43867); similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT3G14300.1); similar to Pectinesterase-3 precursor (Pectin methylesterase 3) (PE 3) (GB:Q43111); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE86450.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.168771459620697 -1.96309518449205 0.0835333041274258 1 2.41421089183673 17.7563206138385 -0.168771459620697 0.0768546311357258
AT3G10520_at 9.87702704087485 9.89727937072586 8.74116226872862 8.68084326942202 10.0922734737792 9.72791572544455 9.57776975172829 9.4456941697405 10.4192941653055 9.92011727987744 10.4060066339655 10.5101878766852 10.2062588272420 10.2283969646240 10.3310905062028 10.4614403250016 9.5109640126198 9.93709910449767 10.0600529359852 0.102720725346684 0.103831670775988 0.106115775371746 0.105490127977540 0.103187963775743 0.101869448984155 0.102521441109211 0.104118993158731 0.108930108855437 0.103038882172639 0.106078311170418 0.104851891206674 0.103943478240139 0.104953780731878 0.101203651539657 0.104937415380629 0.105039287547398 0.105500566484561 0.101656069271604 3 3|0 -|/ 3276541 3277682 3277120.3 3276235 3277865 - gene protein_coding_gene FALSE TRUE AT3G10520.1 AHB2 (NON-SYMBIOTIC HAEMOGLOBIN 2) class 2 non-symbiotic hemoglobin Identical to Non-symbiotic hemoglobin 2 (Hb2) (ARAth GLB2) (AHB2) [Arabidopsis Thaliana] (GB:O24521); similar to AHB1 (ARABIDOPSIS HEMOGLOBIN 1) [Arabidopsis thaliana] (TAIR:AT2G16060.1); similar to Non-symbiotic hemoglobin 2 (Hb2) (BRAna GLB2) (GB:Q941Q2); contains InterPro domain Globin-like; (InterPro:IPR009050); contains InterPro domain Globin; (InterPro:IPR000971); contains InterPro domain Globin-related; (InterPro:IPR012292); contains InterPro domain Leghaemoglobin; (InterPro:IPR001032) -0.161559080645815 -1.96233956048318 0.0836325814419778 1 2.4131732191567 19.6710382963442 -0.161559080645815 0.0679664490360126
AT3G10220_at 7.29055246914742 7.32129878763724 7.13747362876251 7.1945165494173 7.91272759832853 7.38717121234329 6.76338542247768 6.56767836284966 5.96425076649705 6.3926676609392 6.4476644043165 6.28729341600878 6.1227370507618 6.40865347713145 6.47240319100073 5.93980706547192 5.81603806229123 6.2419774426675 6.43695509826665 0.223571895665281 0.225374330351454 0.221839268936815 0.224054609860958 0.224314192459249 0.237337793829441 0.225798226732953 0.232441297348770 0.263939904606345 0.226209111734452 0.22168015607881 0.225859206127895 0.229891198339985 0.23797106160374 0.22598975223664 0.223382084710349 0.235869892441870 0.232684062802404 0.224513465505535 3 3|0 +|/ 3162221 3163574 3162625.7 3161762 3164236 + gene protein_coding_gene FALSE TRUE AT3G10220.1 tubulin folding cofactor B similar to Os04g0692100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054365.1); similar to tubulin-folding cofactor [Plantago major] (GB:CAJ38389.1); contains InterPro domain CAP-Gly; (InterPro:IPR000938) 0.187345370911756 1.96135290842668 0.0837623824148603 1 2.41181847361612 13.4376986400074 0.187345370911756 0.09769698300847
AT1G34640_at 6.34948187460956 6.32689494542357 6.5672616702583 6.77766207167029 7.51666624282582 7.39517207821648 7.13151941732722 7.13258021981142 7.62293696310604 7.0787350411558 7.26696093639324 7.45823807386033 7.55379520951585 7.75479031820363 7.32005064262109 7.2030379270745 7.15490793197493 7.39229251441897 7.5826084404669 0.190762335966105 0.172077122423896 0.181590282381001 0.174500101121385 0.186164063767306 0.187041549086593 0.193046736938526 0.175150766195054 0.178068053624612 0.175741249187888 0.174553574717191 0.174812835377035 0.179298019009292 0.175986782018937 0.183027892173126 0.172077122423896 0.179722054360083 0.176447824326562 0.177273537386355 1 1|0 -|/ 12687716 12688372 12688109.8 12687530 12688521 - gene protein_coding_gene FALSE TRUE AT1G34640.1 similar to Os07g0622900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060318.1) 0.144493557065678 1.96132964779169 0.0837654448408398 1 2.41178653766099 14.3077061529349 0.144493557065678 0.0422269179933301
AT1G19110_at 9.6708013237144 9.67465171730498 9.59106818698221 9.5617308732085 9.72202613787955 9.59463595807005 9.83647978717082 9.9516505220396 10.0998233768316 9.81010349039236 10.0505147374691 9.91384755547166 9.83025020325 9.8159381974167 9.76965094585592 9.84620681853265 9.56565726579142 9.72438772789742 9.86848486904006 0.0809715744446213 0.0781055928910028 0.078473757053117 0.080330002637736 0.0786851979367348 0.0840465828665238 0.0778436834814036 0.0788494368933738 0.083689447553034 0.0778410613565154 0.0771616591806991 0.0764260337063266 0.0785522132328302 0.0764284807715478 0.0781851593854279 0.0764807623195869 0.0797642941856081 0.0764260337063266 0.0777572330800151 1 1 + 6604868 6605719 6605470.091 6602117 6605899 + gene protein_coding_gene FALSE TRUE AT1G19110.1 inter-alpha-trypsin inhibitor heavy chain-related similar to inter-alpha-trypsin inhibitor heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G72500.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE78212.1); similar to von Willebrand factor type A domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89244.1); similar to von Willebrand factor type A domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96527.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) -0.138805556241559 -1.96077547253189 0.0838384376254542 1 2.41102571185163 19.5707275267372 -0.138805556241559 0.0301572564733734
AT1G55270_at 6.62764205294603 6.71833216472231 6.4795109473926 6.47476229538739 7.39956904158141 7.28406527130627 7.1078274957592 7.30831274350513 6.45853338557914 6.68480738987545 6.5568383902095 6.38250272936459 6.35090794408489 6.69963134318817 6.07642601518107 6.37150041568657 6.65269659223188 6.44036355454464 6.95649916068042 0.214108869354143 0.2026055707218 0.2223982421934 0.21626727781696 0.207803572470073 0.216871042557237 0.207391058488477 0.202012194889712 0.218742006981201 0.212355112033149 0.216492565271799 0.200586142036366 0.211509371942306 0.204136594679804 0.222099876508442 0.206935917254711 0.211673682008334 0.204486477249697 0.219949100788523 1 1 - 20622074 20622562 20622302.364 20621621 20623803 - gene protein_coding_gene FALSE TRUE AT1G55270.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G22040.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE78679.1); similar to Os10g0409900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064574.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE86510.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.144819998816587 -1.95999490314641 0.083941353077801 1 2.40995418566745 13.4956552607949 -0.144819998816587 0.0430146858456589
AT2G03890_at 6.669518543464 6.61257749759003 6.24853750437662 6.3485776908228 6.9378245516219 6.85940486802965 6.14194946101757 6.12017046595768 5.83420792362437 5.93729992601199 6.34876252721975 5.99701109538626 5.91890175237463 5.85846494968613 5.63193972371246 6.51510800591251 6.37106845456671 5.71187635472457 6.17858206819334 0.197694978064644 0.206653835265950 0.199016985958980 0.196280204000299 0.198904893750591 0.211632601023032 0.191892285451903 0.191493416169153 0.205056046305898 0.213843224693568 0.19841597206803 0.196633552909146 0.195858748903219 0.201500671084056 0.201464371909975 0.198371084476782 0.199473817040558 0.204095480652269 0.208180153277282 2 2 + 1187636 1188115 1187855.909 1185522 1188542 + gene protein_coding_gene FALSE TRUE AT2G03890.1|AT2G03890.2 phosphatidylinositol 3- and 4-kinase family protein similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G26270.1); similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13640.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); similar to Os06g0283400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057397.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96840.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403)|similar to phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13640.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic [Medicago truncatula] (GB:ABE92357.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403) 0.136655231855035 1.95988750230709 0.0839555229825715 1 2.40980676181225 12.5060725298056 0.136655231855035 0.0243965913781103
AT1G48760_at 4.46403435334869 5.02251102009191 4.39959325546652 4.39673821048804 4.65665945879948 4.4971852032214 4.62692299257811 4.31456778953388 5.53772027990352 5.66958004800681 5.54197537204052 5.64914820691619 4.95889961854935 4.94759699144064 5.1395440691247 5.59318121210793 5.200899022196 5.41859433339031 5.57123453825677 0.191093346625983 0.198448428948007 0.201390934734269 0.191186623064981 0.191995410216760 0.198751497351877 0.195828407315030 0.190693120501323 0.205351605334693 0.199499457079397 0.199775993183080 0.20253742682129 0.197139914560123 0.201251993892434 0.190693120501323 0.195451218861078 0.202357389616139 0.191404813213968 0.200677905766062 1 1 - 18040542 18040856 18040712 18039635 18043073 - gene protein_coding_gene FALSE TRUE AT1G48760.1|AT1G48760.2|AT1G48760.3 DELTA-ADR (DELTA-ADAPTIN); clathrin binding similar to clathrin binding [Arabidopsis thaliana] (TAIR:AT1G60070.1); similar to Adaptin, N-terminal [Medicago truncatula] (GB:ABE78888.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.203040054531304 -1.95548139520276 0.0845388199455311 1 2.40376093008110 9.99681393974587 -0.203040054531304 0.114124551852597
AT1G29470_at 10.2903640908515 10.4217869346552 10.0670697498138 10.0816793045414 10.1556573369173 10.2546189797834 10.5624450127787 10.8257375319017 10.8097564251711 10.9302984075906 11.3085462746028 11.2440885832538 10.8613184337889 10.9906866153281 11.1022255987254 10.9729863578892 10.2536013716721 11.0448540096942 10.9254657758631 0.0781619091304592 0.0771046541342286 0.0779387044183127 0.0787055243222792 0.0779545046034622 0.0788603678980122 0.0794233438306084 0.0767955857607645 0.0842889776539015 0.0767955857607645 0.0772839025119282 0.0767955857607645 0.0785722870760741 0.0767955857607645 0.0790262943538589 0.0767955857607645 0.0873716864120246 0.0777893996929992 0.0797474703180131 1 1|0 -|/ 10310412 10311160 10310647.125 10310231 10314034 - gene protein_coding_gene FALSE TRUE AT1G29470.1|AT1G29470.2 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G51070.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G64030.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT2G34300.2); similar to dehydration-responsive protein, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA96619.1); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22395.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82580.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.150772756852563 -1.95364046342496 0.0847836765696473 1 2.40123618501389 21.2628175052358 -0.150772756852563 0.0537868150083765
AT1G68490_at 9.31279435885948 10.3464378578206 9.82592812494847 10.1268934733497 10.2469060126607 10.122909099058 9.96496847022783 10.3599457094607 9.65398713062713 9.94521395660707 10.4697610767312 10.6080034489518 10.5742560548640 10.4275827722534 9.91163281908382 10.4609681099462 10.4659952685494 9.71262395276547 9.84285658076114 0.112977030783318 0.112489431269708 0.120022207414736 0.118511475439055 0.112429328243301 0.118744677648277 0.110728719267263 0.112351193888617 0.121971573097721 0.115087196987363 0.115020264852372 0.110402649455612 0.117032611436016 0.114219759936240 0.113303577935732 0.111465338196707 0.127532453788465 0.121545625658312 0.114536360725949 1 1|0 +|/ 25697591 25698423 25697941 25697112 25699139 + gene protein_coding_gene FALSE TRUE AT1G68490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13390.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96883.1) 0.299728146820052 1.95303413078823 0.0848644714535936 1 2.40040479704707 20.1097839685773 0.299728146820052 0.199604979015491
AT4G34760_at 6.53540917347489 6.57880917283534 5.3114781953318 5.76024547538718 6.68861206497863 7.22353025504948 6.85770880933405 7.25987150281493 8.08374673084454 7.12603735837857 8.42203212467325 8.54157984989587 7.76336789642523 7.71443077153048 8.5060946136986 7.80951658360388 7.26277769242134 8.24326342161725 8.58215927283038 0.210869091279048 0.201724031917139 0.229085006107452 0.223069730192618 0.197476731255860 0.196861152203443 0.189268428673385 0.196246386958580 0.201101467623428 0.199136041331500 0.190712340872465 0.210032764196077 0.198592739614035 0.196309289283434 0.210435172522785 0.194927394152042 0.195031837361246 0.215132715299261 0.206526613498848 4 4 - 16582478 16582761 16582599.091 16582188 16582884 - gene protein_coding_gene FALSE TRUE AT4G34760.1 auxin-responsive family protein similar to auxin-responsive protein, putative [Arabidopsis thaliana] (TAIR:AT2G16580.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE79956.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.22987404252298 -1.95222115450604 0.0849729175743463 1 2.39929019440503 14.508723409443 -0.22987404252298 0.139644276845842
AT3G56110_at 6.73166551265597 7.24282235112354 6.48304927848648 6.78546824686766 6.97951856887145 6.68088344557208 6.23096793037268 6.72636166026247 5.72313296619701 5.25168959413082 5.5789416242709 5.65339534302555 5.78949951549543 5.82602157687794 5.93086832519770 5.78465545306106 5.61317578936354 5.45075141718071 4.72937915691975 0.256494842411528 0.262529179820611 0.257465441017038 0.260196068619423 0.256494842411528 0.274339737613173 0.258479116830329 0.2696113466045 0.275888445325383 0.27296722931285 0.260728533159737 0.262664093543546 0.26577998034209 0.277021191501744 0.266340601274246 0.256494842411528 0.257835529976747 0.266988123228135 0.269906362984451 3 3 - 20833253 20833711 20833475 20832913 20833987 - gene protein_coding_gene FALSE TRUE AT3G56110.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT2G40380.1); similar to Os05g0474400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055824.1); similar to prenylated Rab acceptor protein 1 [Oryza sativa (indica cultivar-group)] (GB:AAV65110.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.233977623077832 1.95108827324326 0.0851242582009145 1 2.39773724574643 12.2016658924307 0.233977623077832 0.143472276557226
AT1G50600_at 7.76887913570816 8.35545075009864 8.2117323493136 8.3356896434847 8.90370868198475 8.04985355025484 8.23710197456548 7.86964837559713 7.05161735884127 7.13107435346946 7.5470090542459 7.11457961265213 7.62536126255853 7.50259066031639 6.83587861637118 8.12663483157269 6.95048186356419 6.90640574445437 7.01062356969991 0.222423580458723 0.217802911774067 0.226856119907933 0.214629518554065 0.217257476991973 0.250993524295325 0.219610679777633 0.221779688524666 0.243734223123307 0.214629518554065 0.222217220017214 0.224513548309677 0.222584305360786 0.227862853681220 0.216243860666050 0.214629518554065 0.256307105217437 0.240286090722810 0.225616119728643 1 1 - 18741074 18741641 18741391 18740800 18743215 - gene protein_coding_gene FALSE TRUE AT1G50600.1 SCL5; transcription factor Encodes a scarecrow-like protein (SCL5). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to Putative SCARECROW gene regulator-like [Oryza sativa (japonica cultivar-group)] (GB:AAM08829.1); similar to Chitin-inducible (GB:ABB47346.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.289577637823579 1.95107438071680 0.0851261156908806 1 2.39771820373031 15.4117861241528 0.289577637823579 0.191420863449470
AT1G59840_at 6.29474118458412 6.71542704217322 5.55500135587998 5.44957022231168 6.79967602903807 6.22527420186226 7.01125821292115 7.18998485962417 5.93023242748494 6.34212639538613 5.69751728711171 7.09813015467634 5.93633822152915 6.91661873173686 7.04621340121985 7.24104183807025 6.45213136499845 6.51821208657051 6.48517279996825 0.278701768251440 0.267332264876713 0.280717472578923 0.270188441135942 0.266378920796688 0.286756105032534 0.268173944272144 0.269557283566340 0.269805420468897 0.269701572405781 0.275641150113709 0.26803719003325 0.271556375317633 0.270461359860333 0.273717954778428 0.268821963889189 0.282065099696068 0.272912761957319 0.273012080314357 1 1|0 +|/ 22030841 22031773 22031303.875 22030172 22033044 + gene protein_coding_gene FALSE TRUE AT1G59840.1|AT1G59840.2 similar to Os04g0650500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054091.1); similar to H0212B02.11 [Oryza sativa (indica cultivar-group)] (GB:CAJ86182.1) -0.217353763879984 -1.95015835451817 0.0852486778889134 1 2.39646273386986 12.8380096018921 -0.217353763879984 0.128337621973096
AT3G60370_at 7.35116094243208 7.63297371375155 6.86936161024174 7.3948570950468 8.20219719311297 7.43035069127198 7.89933173606041 7.68795948095296 7.80338318427475 7.65271356519826 7.25070447504989 7.43258289310344 6.93506601221318 7.44643526022248 7.66863224679719 7.29635495427395 6.97960134449516 7.37295863288059 7.53441883434409 0.186597515133234 0.180845837657776 0.185172461240076 0.197321750465091 0.182299025667523 0.180754364663920 0.184021825973042 0.180863436591353 0.186833375827081 0.177187380682566 0.177301601717495 0.181700328136240 0.183056114198479 0.177187380682566 0.184176810370817 0.179334408873133 0.209974822642824 0.183594434654339 0.181105261702966 3 3|0 -|/ 22325980 22327147 22326552.6 22325707 22327525 - gene protein_coding_gene FALSE TRUE AT3G60370.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Encodes an immunophilin, FKBP20-2, that belongs to the FK-506 binding protein (FKBP) subfamily functioning as peptidyl-prolyl isomerases (PPIases) in protein folding. FKBP20-2 has a unique pair of cysteines at the C terminus and was found to be reduced by thioredoxin (Trx) (itself reduced by NADPH by means of NADP-Trx reductase). The FKBP20-2 protein, which contains only two of the five amino acids required for catalysis, showed a low level of PPIase activity that was unaffected on reduction by Trx. Genetic disruption of the FKBP20-2 gene provide evidence that FKBP20-2 participates specifically in the accumulation of the PSII supercomplex in the chloroplast thylakoid lumen by means of a mechanism that has yet to be determined. similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT2G43560.1); similar to Os07g0490400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059674.1); similar to FKBP-type peptidyl-prolyl cis-trans isomerase (ISS) [Ostreococcus tauri] (GB:CAL51684.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.267189019053547 -1.94954480006461 0.0853308644269301 1 2.39562192617461 15.0391726438514 -0.267189019053547 0.172707270896816
AT1G10290_at 6.57005323822626 6.28329093225674 6.47037839432067 6.5473312953391 6.08054323890367 6.24262018241737 6.09292876561663 5.44006616605121 5.64675811151833 5.89148673030653 6.01039626580057 6.02578401027855 5.82392477121229 6.12301739236033 5.99067100931045 5.89537181078301 6.26750504716915 5.54596370566355 5.76233444703767 0.200723764612103 0.205620523970694 0.211390130202420 0.20699769922764 0.203738319562527 0.210107721257038 0.216964101269532 0.211731477827263 0.218922202484439 0.216826433201171 0.209097891627351 0.20871269119209 0.203476026314724 0.209737064707623 0.205128513792765 0.204549682661448 0.204452674757972 0.225529069031409 0.202166200700864 1 1 + 3376257 3377092 3376832 3370560 3377465 + gene protein_coding_gene FALSE TRUE AT1G10290.1 ADL6 (DYNAMIN-LIKE PROTEIN 6) involved in trafficking from the trans-Golgi Network to the central vacuole. Identical to Dynamin-2A (EC 3.6.5.5) (Dynamin-related protein 2A) (Dynamin-like protein 6) (DRP2A) [Arabidopsis Thaliana] (GB:Q9SE83;GB:Q9SY71); similar to ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) [Arabidopsis thaliana] (TAIR:AT1G59610.1); similar to putative dynamin homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD16041.1); similar to DRP [Cucumis melo] (GB:AAU04752.1); similar to dynamin homolog [Astragalus sinicus] (GB:AAF19398.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.216051495412774 1.94892954584930 0.08541335474002 1 2.39477887478442 12.0794960339047 0.216051495412774 0.127245539626384
AT1G01540_at 8.25854046529887 8.1073418229531 8.34407409956965 7.97749560780575 8.37066198490256 8.27476553766603 9.00742303619402 8.81744997668731 9.29759780106156 8.92208105538478 9.57592928602911 9.16633983309291 9.03891291192766 9.18277706168458 9.15335635045046 9.13047747349577 8.8759110549364 8.82076314976251 9.22690449909163 0.119269236231768 0.116239009720322 0.118205127218390 0.123485944368342 0.121647214701188 0.113559856677284 0.112334699169753 0.116955570471831 0.128946737086703 0.116760460146711 0.121735018668982 0.116652968185769 0.112326041868783 0.123003974874118 0.119728703634643 0.11232234551491 0.112280618024712 0.116153373019077 0.116441819423212 1 1 + 197560 198343 198051.455 195780 198641 + gene protein_coding_gene FALSE TRUE AT1G01540.1|AT1G01540.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G01330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048818.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G02630.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048818.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.168371123068777 -1.94850686318423 0.0854700701758085 1 2.39419974408905 17.5281788207272 -0.168371123068777 0.0778797348082982
AT4G33865_at 11.6453027656125 11.7011432143581 11.4349024589154 11.5184173135022 11.5146411579118 11.4613701014581 11.5414075334261 11.8098730277474 11.7550191462645 11.6597303397164 11.7491732466457 11.7417740314016 11.6483150930788 11.4127590154164 11.9281593784829 11.4224112666066 11.6745772717042 11.2417541576979 11.7050708791626 0.0704658174664333 0.0687290104808317 0.068890316936531 0.0687290104808317 0.0687477046851605 0.0698077489369992 0.0691519081546721 0.073713160227067 0.0687290104808317 0.0744315903774659 0.0716417705013681 0.0687290104808317 0.0691410142432437 0.0731775248867213 0.0687290104808317 0.0689433230104879 0.0721025490596604 0.0725450028021002 0.0721295754579886 4 4|0 -|/ 16233552 16234082 16233768.6 16233214 16234201 - gene protein_coding_gene FALSE TRUE AT4G33865.1 40S ribosomal protein S29 (RPS29C) Identical to 40S ribosomal protein S29 (RPS29C) [Arabidopsis Thaliana] (GB:Q680P8;GB:Q9LDT9); similar to 40S ribosomal protein S29 (RPS29B) [Arabidopsis thaliana] (TAIR:AT3G44010.1); similar to 40S ribosomal protein S29 (RPS29A) [Arabidopsis thaliana] (TAIR:AT3G43980.1); similar to Os11g0634500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068325.1); similar to ribosomal protein S29 [Triticum aestivum] (GB:AAW50992.1); contains InterPro domain Ribosomal protein S14; (InterPro:IPR001209) -0.148170116545527 -1.94714392655253 0.0856531939803235 1 2.39233261849789 23.2328683071217 -0.148170116545527 0.050454980916384
AT1G75400_at 5.21789087420427 5.38659164845622 4.75605836088076 5.17109409353371 5.25955453729669 5.36955773337390 5.05951350557883 5.23931063126814 3.98765778987274 4.52595137187537 4.18395985216765 3.86025429400655 4.34165938857415 3.90493860495932 3.94126364508284 3.94330593725991 4.22055487729321 4.02481388000777 4.43363764395322 0.247398187923874 0.249678358634582 0.258636695037039 0.243999800806437 0.26135545067596 0.258669994783384 0.244220867505493 0.245088476279455 0.257777617603078 0.254179384229028 0.249264136171439 0.245331329743787 0.246644074690567 0.253811815758295 0.256042113288656 0.252033275463755 0.244980017093051 0.253994856270101 0.255467623406614 1 1 + 28302462 28303100 28302736.455 28300580 28303347 + gene protein_coding_gene FALSE TRUE AT1G75400.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G19680.1); similar to Os01g0261100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042647.1); similar to putative C3H2C3 RING-finger protein [Triticum tur (GB:AAR32739.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.174957804460224 -1.94703836695433 0.0856673925815673 1 2.39218802703155 9.3666177956504 -0.174957804460224 0.085682564012664
AT1G28060_at 7.49284535252166 7.2303239445502 7.09805992877394 7.05118250349576 7.32956047536668 7.24436571616913 6.46706760682233 6.44671004866048 6.31427605698574 6.35693168487337 6.39404192541132 6.82205184950075 6.64603864038467 6.37284889930001 6.26277719445721 6.32906395227669 6.10627833370637 6.18946865233153 6.43247633788727 0.197591056840172 0.181322791033680 0.177903042458032 0.184280787253801 0.183061947724149 0.205570390146900 0.185589407559352 0.182432849187907 0.193218982044125 0.185172080936165 0.182173653773222 0.188713504694310 0.182076984085216 0.181644818041748 0.185442659930387 0.180019063785972 0.195015076559219 0.192325230794086 0.180805791722386 1 1 + 9781890 9782442 9782172.455 9779125 9782687 + gene protein_coding_gene FALSE TRUE AT1G28060.1 small nuclear ribonucleoprotein family protein / snRNP family protein similar to RNA splicing factor-related [Arabidopsis thaliana] (TAIR:AT3G55930.1); similar to Putative u4/u6 small nuclear ribonucleoprotein (ISS) [Ostreococcus tauri] (GB:CAL53657.1); similar to Os09g0249600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062673.1); contains domain U4/U6-ASSOCIATED RNA SPLICING FACTOR-RELATED (PTHR14212) 0.146990952742490 1.94660892705749 0.0857251788478474 1 2.39159982297647 13.4241223841299 0.146990952742490 0.0485749243504482
AT1G26150_at 8.90398522999957 8.91980069399415 8.81760321565365 8.74731920099838 9.09267003673773 9.03260768206459 9.30429353640087 9.2116406804313 9.48926930149362 10.1858247754435 10.0310592912393 9.73575495721897 9.8725131317737 9.98166907914976 9.47932045385817 10.1388681877321 9.79087861915445 9.84984298294888 10.2290969095684 0.0891020830141777 0.0905520875228623 0.0904464630789732 0.092189664925895 0.090136366896602 0.0921729919053768 0.0882901239363723 0.0936315374952593 0.0940785675734799 0.087266862968386 0.0897940306880584 0.0888314370153274 0.0912175248008115 0.0939571824628052 0.090061508199211 0.0873920830983661 0.0975018004947963 0.0881887460993161 0.0893510807042949 1 1|0 -|/ 9039883 9040558 9040229.222 9039615 9043275 - gene protein_coding_gene FALSE TRUE AT1G26150.1 protein kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38560.1); similar to protein kinase family protein [Musa balbisiana] (GB:ABF70139.1); similar to Os01g0110500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041798.1); similar to protein kinase family protein [Musa acuminata] (GB:ABF70054.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.135227662813491 -1.94654244300534 0.0857341284015373 1 2.39150876348944 18.9177660345615 -0.135227662813491 0.0228156740106254
AT1G67480_at 7.56747336213131 7.42009237649669 7.44413499167183 7.36950990556927 7.79119612047213 7.50669618019612 8.23795980461314 7.80661333348462 7.43981158035428 8.08124713174682 7.65647570975288 7.89193910553635 7.72621591344614 7.53022278382581 7.3936033762878 8.14796793597957 8.08358634972858 7.63984727241535 8.1581162964511 0.137702513666802 0.145601207315035 0.144698015836391 0.144491841822609 0.140894550027523 0.143896496768977 0.146405377085996 0.147188671131198 0.166045295885256 0.145340928776652 0.140578442986819 0.145260496627759 0.149369474406150 0.142284283186509 0.151048773156098 0.146264547509276 0.14391680851339 0.151519621055563 0.149955175798735 1 1 + 25281488 25282168 25281926.091 25279957 25282381 + gene protein_coding_gene FALSE TRUE AT1G67480.1|AT1G67480.2 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G27420.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE78679.1); similar to Os04g0380300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052597.1); similar to Os02g0504900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046914.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.182238225008303 -1.94537697085371 0.085891160124761 1 2.38991264515281 15.4688548303572 -0.182238225008303 0.093879571634786
AT2G30260_at 7.59491341660204 7.67909999432914 6.98332558483464 7.18986876357388 7.7631600471768 7.33680314221054 7.01369809264045 7.01802370989811 7.71699313445929 7.22477576326248 7.38550927652369 7.3289957809131 7.14239251750424 7.16018937463702 7.13662409097696 7.01521681407039 6.68439986496108 6.99609635392121 7.38836190415774 0.176287726636604 0.177608776899764 0.192597188563748 0.197437314264736 0.176437843621977 0.186660359608692 0.181395671323802 0.176902577474408 0.190613010597321 0.186625530483955 0.179108102452400 0.176287726636604 0.183544114054570 0.188611051737686 0.183188793167925 0.180802545896856 0.189224389398704 0.201816099030476 0.179108573331727 2 2 - 12912644 12914013 12913140.364 12912479 12914586 - gene protein_coding_gene FALSE TRUE AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding encodes U2B", which is a component of the U2 snRNP complex. Its precise role in pre-mRNA splicing is still unknown. It has been suggested that U2B0 may not be required for the splicing reaction itself but may have a role in U2 snRNP biogenesis. Deletion analysis of the U2B0 gene fusion has identified the N-terminal RNP-80 motif as sufficient for localization to the coiled body and the nucleus. similar to small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative [Arabidopsis thaliana] (TAIR:AT1G06960.1); similar to spliceosomal protein (GB:AAA33847.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.172671671844926 -1.94509424085715 0.0859292956131633 1 2.38952549211602 14.5971390654823 -0.172671671844926 0.0832726357833419
AT1G11410_at 7.17194293188471 7.54711261339467 7.8091139497052 7.68668192491742 7.82727028466555 7.75256779530641 8.71894825000366 8.67240609567925 8.02014929440608 8.29001299061302 8.27628828518161 8.0551034995438 8.38603327526007 8.32505348003015 7.59524994629761 8.58283347248115 8.18318273577748 7.98717948690038 8.40523112308407 0.164033915295573 0.154081743778672 0.153723139813550 0.161601832580577 0.158662993405178 0.155672560029956 0.156851822594588 0.160265673956650 0.176325111938367 0.159066022929118 0.159772329919000 0.157997623634718 0.163389990757620 0.159773723786731 0.156111036190966 0.153723139813550 0.166022409327061 0.174938169264662 0.157121757947797 1 1 + 3843547 3844253 3844013.091 3841286 3844432 + gene protein_coding_gene FALSE TRUE AT1G11410.1 S-locus protein kinase, putative similar to S-locus lectin protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11340.1); similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to ARK2 (Arabidopsis Receptor Kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G65800.1); similar to serine/threonine kinase [Brassica oleracea] (GB:CAA73134.1); similar to receptor protein kinase [Ipomoea trifida] (GB:AAC23542.1); similar to unnamed protein product [Brassica oleracea var. acephala] (GB:CAA55950.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.161646465387812 -1.94458958815874 0.0859974049440712 1 2.38883449719877 16.1044204767205 -0.161646465387812 0.0699724282312666
AT4G20300_at 4.56023346649282 4.93739002693311 4.5113176296364 4.78032531105953 4.98581927932932 5.08517055166743 4.93670875308772 5.27712181488689 5.25478569372319 5.9222249393734 6.66855930495623 6.34038431050848 6.47886434876218 6.21356951109128 5.7027754414244 6.13995119234491 6.09187639910717 5.33451421858900 5.7921454140529 0.181380388415003 0.187042360730150 0.186232581477083 0.18142172893088 0.187523190285584 0.189962108980810 0.188173550434494 0.185841584665135 0.190068880671935 0.205163417621551 0.194358597529632 0.183291215190041 0.190018242566749 0.187651206756060 0.189451190620819 0.181380388415003 0.197145138904599 0.186090190119748 0.187319623992641 4 4|0 +|/ 10957730 10958851 10957981.556 10955448 10959223 + gene protein_coding_gene FALSE TRUE AT4G20300.1|AT4G20300.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73751.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD73751.1); similar to Os01g0680700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043875.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) 0.188860584685580 1.94457863882494 0.085998883268347 1 2.38881950548587 10.7731094490855 0.188860584685580 0.100961332514408
AT2G45200_at 7.17345909325104 7.26537896810265 7.07266335062119 6.63686361213424 7.2315217830618 7.22629617534263 6.87417964248837 6.97393953296648 6.29230058804388 6.6318294195398 7.2333340156522 6.97275408374998 6.65793925560003 6.74988115156638 7.20758957586501 6.72457991417508 6.88570288545815 6.56012660732221 6.59443929299085 0.21443358476155 0.207897210753595 0.201028194215102 0.200295071714167 0.198127048684648 0.211830749634598 0.201752590984747 0.198127048684648 0.210209561106278 0.199835345274016 0.204583434135403 0.204875939624709 0.198127048684648 0.204884847716856 0.204254245385506 0.200936545740799 0.208455630036624 0.206031741238568 0.204145635984678 2 0|2 /|- 18644768 18646101 18645225 18644582 18646882 - gene protein_coding_gene FALSE TRUE AT2G45200.1 GOS12 (GOLGI SNARE 12); SNARE binding Encodes a member of the GOS1 (Golgi SNARE) gene family. Identical to Golgi SNARE 12 protein (AtGOS12) (Golgi SNAP receptor complex member 1-2) (GOS12) [Arabidopsis Thaliana] (GB:O22151); similar to GOS11 (GOLGI SNARE 11), SNARE binding [Arabidopsis thaliana] (TAIR:AT1G15880.1); similar to Os02g0126800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045755.1); similar to PREDICTED: similar to p28 [Strongylocentrotus purpuratus] (GB:XP_797717.2); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.168947795201644 1.94439659646142 0.0860234652767653 1 2.38857025900992 13.7468768712620 0.168947795201644 0.0789914487904929
AT2G24050_at 4.86780586603938 5.46095731566404 4.36888373733806 4.7606845729995 5.129597782557 4.57775932757966 5.29176825397661 6.03440825282756 5.11674591348016 5.27132527087078 5.30695405158532 5.89089494267205 5.18619419330749 5.5376942342731 5.63063971304885 5.60816874273175 4.80071856425968 4.82038451048994 5.34771605586691 0.196336291912779 0.182499874165760 0.194440800717947 0.192323937228973 0.187501318438221 0.195497471821308 0.184837608269151 0.182499874165760 0.191645856998447 0.187669430186589 0.188434641981462 0.186984240127412 0.184326940608041 0.185535860049937 0.191324525226717 0.182499874165760 0.208282422243396 0.197727573337583 0.182499874165760 2 2 - 10232582 10233154 10232850.273 10232305 10235718 - gene protein_coding_gene FALSE TRUE AT2G24050.1 MIF4G domain-containing protein / MA3 domain-containing protein similar to eukaryotic translation initiation factor 4F, putative / eIF-4F, putative [Arabidopsis thaliana] (TAIR:AT5G57870.2); similar to Initiation factor eIF-4 gamma, middle; Initiation factor eIF-4 gamma, MA3 [Medicago truncatula] (GB:ABE79486.1); similar to Eukaryotic initiation factor iso-4F subunit p82-34 (eIF-(iso)4F p82-34) (GB:Q03387); similar to initiation factor (iso)4f p82 subunit (GB:AAA74724.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) -0.301029930684134 -1.94336375488400 0.086163061758428 1 2.38715626954571 10.3579674048487 -0.301029930684134 0.201916781221845
AT4G09720_at 8.90691595871333 8.79896168986744 9.06254857628517 8.99776162407931 9.38173495139866 8.92923477703562 9.33627440213005 9.16950500111406 8.81929996870923 8.59198483136547 9.14110745589845 9.1130184317428 8.97368416791149 8.84770022066838 9.21482163000239 9.02196228633293 8.6844300336529 8.96957454129827 8.64533316827252 0.110671625110114 0.102718514995225 0.106548575667715 0.104402609441012 0.100498245276950 0.105914312637676 0.101642406887131 0.105107512511437 0.118516306702263 0.107281943860298 0.106081187176710 0.104784330202119 0.101220531442121 0.106857800583604 0.109285250990924 0.106812008847889 0.109159225070668 0.105366577467795 0.105932698308934 4 4|0 +|/ 6133120 6134932 6134181.333 6132914 6135180 + gene protein_coding_gene FALSE TRUE AT4G09720.1|AT4G09720.2 AtRABG3a; GTP binding similar to RAB7 (Ras-related protein 7), GTP binding [Arabidopsis thaliana] (TAIR:AT1G22740.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753)|similar to RAB7 (Ras-related protein 7), GTP binding [Arabidopsis thaliana] (TAIR:AT1G22740.1); similar to RAB7A [Lotus japonicus] (GB:CAA98168.1); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.175076871199757 1.94274798812125 0.086246390350452 1 2.38631338365328 17.9135304569384 0.175076871199757 0.0862534572661235
AT3G59540_at 9.67170983072333 9.8355492732641 8.99744764559134 9.23467839595425 9.45421557227126 9.27971512332542 9.66683691271186 9.90151783996527 9.01246345272057 9.16354583622118 9.6209886537296 9.88699852520163 9.2700999556499 9.31019916108183 10.1079140455240 9.22594290177381 8.81828805910707 8.67450380321135 9.30849433872614 0.144677472163823 0.144239486980759 0.147657923931618 0.145742778874097 0.13877463238851 0.151820707091249 0.142472113863145 0.144473885576719 0.149970280386255 0.148499034566127 0.141336930945083 0.141059032452471 0.139291437884385 0.149236204112789 0.143406983812786 0.13877463238851 0.153458294407914 0.150988492555176 0.141270699446452 3 0|3 /|- 22007209 22007341 22007272.2 22006655 22007813 - gene protein_coding_gene FALSE TRUE AT3G59540.1 60S ribosomal protein L38 (RPL38B) Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38A) [Arabidopsis thaliana] (TAIR:AT2G43460.1); similar to Ribosomal L38e protein [Medicago truncatula] (GB:ABE93319.1); similar to 60S ribosomal protein L38 (GB:P46291); contains InterPro domain Ribosomal L38e protein; (InterPro:IPR002675) -0.16226180047165 -1.94168207208012 0.0863908174119628 1 2.3848545213368 18.7681428729171 -0.16226180047165 0.0710678293536181
AT1G27100_at 8.96500886354442 9.1888739656476 9.0570447539837 9.3546601378688 9.19351831463639 9.25605462639612 8.51747593620809 8.8176966728764 8.58460456959888 8.1579026529586 8.40823166517953 8.37841252203598 8.54472628004226 8.59545858864088 8.26365216438216 8.56479777113647 8.26330826080381 8.33384177126395 8.50865823347306 0.144914792641737 0.136007385518403 0.149779309265834 0.141056716693168 0.142569907319486 0.141730309647327 0.138788415196649 0.138347279678711 0.146457642515944 0.141729257213547 0.136482497919235 0.142187333253836 0.139243020441289 0.13938724022014 0.143891978307989 0.145810881918919 0.149977253716572 0.140944032365302 0.152374408070975 1 1 - 9407560 9408155 9407861.1 9407112 9411159 - gene protein_coding_gene FALSE TRUE AT1G27100.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69890.1); similar to Cytosolic fatty-acid binding; Actin-crosslinking proteins [Medicago truncatula] (GB:ABE82702.1); contains InterPro domain Protein of unknown function DUF569; (InterPro:IPR007679); contains InterPro domain Actin-crosslinking proteins; (InterPro:IPR008999) 0.172527037288787 1.94138015884561 0.0864317673404597 1 2.38444135627834 17.4618460488681 0.172527037288787 0.0834858784420374
AT3G15790_at 8.32681006317802 8.27079253738626 7.79157589961718 7.63880179163884 7.91867867409505 7.83704309504155 8.9364946810699 8.78053137238527 6.15312298794612 7.91322735568348 7.59738982406053 7.4608101076668 7.71869486218118 7.53645609993334 7.04118754774757 7.40427717337664 7.96881053247293 7.08518360995622 6.87280710651107 0.158606220330315 0.161587399394637 0.158424671633175 0.168185474668453 0.157961747675285 0.161952945189369 0.157617670772319 0.165503221179328 0.167937642446201 0.157802568404197 0.157310775603862 0.154110274788509 0.160136454447856 0.168570538528882 0.176862776846301 0.155560061483534 0.157390044546301 0.158786251106646 0.158943111685662 3 3 + 5343830 5344335 5344000.455 5343216 5344707 + gene protein_coding_gene FALSE TRUE AT3G15790.1 MBD11 (methyl-CpG-binding domain 11); DNA binding Protein containing methyl-CpG-binding domain.Has sequence similarity to human MBD proteins. similar to MBD10 (methyl-CpG-binding domain 10), DNA binding [Arabidopsis thaliana] (TAIR:AT1G15340.1); similar to methyl binding domain protein MBD109 [Zea mays] (GB:AAM93219.1); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739) -0.142625114389599 -1.94126403003244 0.0864475233818199 1 2.38428244081265 15.4157511991622 -0.142625114389599 0.0414850734297182
AT2G29970_at 9.67900368602338 10.1391979143224 9.6227289415354 9.61770076507809 10.1556906802278 9.71526093708233 10.2968552520913 10.2082707236950 9.79936490141973 10.2044948005980 10.2874272041819 10.3268311521716 10.1274529377308 10.0203771904795 9.03464338384564 10.1966332599898 9.89670890566217 9.80197128935505 10.1638627818229 0.129287812821612 0.128573118846743 0.134668507030993 0.136907767731380 0.126883619659377 0.137534550004602 0.127284920255075 0.131348841929485 0.137562550049270 0.137138056215119 0.126883619659377 0.127198978636722 0.131331922905466 0.133379787754685 0.143250528726297 0.126883619659377 0.139638559825003 0.139048801350700 0.133865072381834 2 2 + 12786369 12786828 12786619.545 12783463 12787015 + gene protein_coding_gene FALSE TRUE AT2G29970.1 heat shock protein-related similar to ATP-dependent Clp protease ClpB protein-related [Arabidopsis thaliana] (TAIR:AT1G07200.2); similar to Os11g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065527.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91056.1); similar to Os12g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065925.1) -0.198694196119317 -1.94113466481643 0.0864650785333444 1 2.38410541576011 19.9380451925273 -0.198694196119317 0.111298447524702
AT4G18950_at 5.02452206140516 5.65249450410741 5.67796573445443 5.86344257935946 5.56054572620377 4.47496123021002 5.52670318321279 5.29550580658439 4.94612730759258 4.67348843643873 5.38912830685402 5.86050642119573 4.80902347440748 5.18993892624515 5.4025025932293 5.39269857711874 4.6690683434133 5.85206904001437 4.44274417929751 0.216393054647954 0.220879008197636 0.220196021438381 0.215165297785167 0.215752592576199 0.214218351348397 0.222718740041889 0.223870149144566 0.233064048078822 0.214194555054419 0.224873750856445 0.214290353517702 0.219961561065692 0.228507571930155 0.228255531223056 0.222469768214147 0.234369730941414 0.220120498466686 0.215737075499105 4 4|0 +|/ 10377070 10378116 10377716.667 10375375 10378401 + gene protein_coding_gene FALSE TRUE AT4G18950.1 ankyrin protein kinase, putative similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G58760.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06434.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.326293040631485 1.94086506598446 0.08650167464823 1 2.38373650557262 10.3885527372352 0.326293040631485 0.223012139976033
AT3G42050_at 10.8257650472463 10.8411476652862 11.0769951874970 11.0275420747228 11.0070058258674 10.8187246889336 11.1474963393289 11.0457374058774 10.7640291189249 10.9447989288958 11.1172026731310 11.0757221568482 11.1251081463196 11.0460687423608 11.1404641489118 11.0020781170349 11.1076551435961 11.2229982727797 10.8128050039295 0.0675795517426024 0.0660792543459845 0.0701564669978251 0.068770743990164 0.0658197483953217 0.0706825846866193 0.0665379264268571 0.0658197483953217 0.081357036275395 0.0672510378424498 0.0681494417194058 0.068874200812406 0.0658197483953217 0.0701509604168411 0.0674369846655751 0.067320001082167 0.0678500476164359 0.0680975491054934 0.0667999288019028 3 3|0 -|/ 14239839 14240573 14240159.889 14239481 14244231 - gene protein_coding_gene FALSE TRUE AT3G42050.1 vacuolar ATP synthase subunit H family protein Identical to Probable vacuolar ATP synthase subunit H (EC 3.6.3.14) (V-ATPase H subunit) (Vacuolar proton pump subunit H) [Arabidopsis Thaliana] (GB:Q9LX65); similar to putative vacuolar ATPase subunit H [Mesembryanthemum crystallinum] (GB:CAD27445.1); similar to Probable vacuolar ATP synthase subunit H (V-ATPase H subunit) (Vacuolar proton pump subunit H) (GB:Q84ZC0); similar to putative vacuolar ATPase subunit H protein [Suaeda maritima subsp. salsa] (GB:AAO65974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain ATPase, V1 complex, subunit H, C-terminal; (InterPro:IPR011987); contains InterPro domain ATPase, V1 complex, subunit H; (InterPro:IPR004908) 0.14082407717993 1.93990196689310 0.0866325293509532 1 2.38241876914751 21.9464050421981 0.14082407717993 0.0381061899354111
AT1G22270_at 6.89125279763166 6.84944606195463 6.5128401835265 6.57462471893685 6.5292737381691 6.89923229800709 6.94788591392951 6.95643430199385 6.19962946244887 6.12216284660546 6.2233148169308 6.3125432334674 5.90573613988633 5.96281031833068 6.09880200480674 6.21027887956034 5.99570275752721 6.11108300847444 6.08405605246796 0.186367348410695 0.192949710412080 0.183864399015470 0.184554837566626 0.192648105600363 0.184311755501354 0.192396014466165 0.189771382484890 0.188759935116622 0.188338381364086 0.184005406176596 0.186336524893735 0.193410947138236 0.18568544303524 0.186571013462686 0.178217199787230 0.184096926228382 0.195457970221492 0.197577324790389 1 1 + 7865551 7865875 7865708.182 7865470 7866128 + gene protein_coding_gene FALSE TRUE AT1G22270.1 Identical to TRM112-like protein At1g22270 [Arabidopsis Thaliana] (GB:Q8LFJ5;GB:Q9LME3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78190.1); similar to Protein of unknown function DUF343 [Medicago truncatula] (GB:ABE93747.1); contains InterPro domain Protein of unknown function DUF343; (InterPro:IPR005651) -0.157505463259313 -1.93718256087006 0.0870030320260105 1 2.37869916561478 12.8890320927922 -0.157505463259313 0.065328431935358
AT3G06780_at 6.90757164391733 7.19210412399554 7.29352004196557 7.32575316976484 8.176998321829 7.2325087195125 7.78873451861564 7.42717957077716 7.1135207368486 7.12260066611846 7.66513471339352 7.26464435406912 7.78095038424737 7.91337252914646 6.80600480354211 7.95563497416183 7.56498553223521 7.33213734499303 7.24755343408535 0.203183478070280 0.181305247858652 0.186953575431395 0.184332068064509 0.182388933186534 0.192722395046664 0.185131409026330 0.186274436078639 0.199753449821243 0.183603465836914 0.186705028597718 0.185288537507113 0.179779330203099 0.181595039190604 0.193582137903528 0.179779330203099 0.200298286016893 0.201250362938352 0.188381166007752 3 3 + 2143661 2144216 2143885.182 2143494 2144527 + gene protein_coding_gene FALSE TRUE AT3G06780.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G75550.1); similar to RNA-binding re (GB:YP_729253.1); similar to Os01g0346700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042964.1) 0.276215366365503 1.93698987379505 0.087029341807015 1 2.37843567317894 14.7663377763761 0.276215366365503 0.181895212245172
AT4G15545_at 12.4392865723188 12.4119339190999 12.7760230373244 12.7661962154128 12.9230160146574 12.5736607240743 13.0077533112202 12.9566446045165 12.4897736188921 12.9016255861680 13.0018319056925 12.9233410568274 13.1679462431136 13.0179435874791 12.7714013689031 13.2110996270753 12.9827103644503 13.0150683682779 12.8829042054821 0.0737920087147276 0.0720034467841501 0.0772793150181252 0.0739920795107298 0.0720034467841501 0.0784559959523107 0.0722119380926066 0.0739890412798567 0.081963508467414 0.0720034467841501 0.0750806494552528 0.0720034467841501 0.0720034467841501 0.0744943112487705 0.0788414996694789 0.073724816786918 0.0816786753914333 0.0743491183499323 0.0724734231944062 4 4 + 8876652 8877530 8877046.818 8875916 8877797 + gene protein_coding_gene FALSE TRUE AT4G15545.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16520.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85086.1); contains InterPro domain DNA topoisomerases I, dispensable insert, eukaryotic-type; (InterPro:IPR009054) 0.154568037229183 1.93690917496699 0.0870403628024737 1 2.37832532307967 25.6165737758655 0.154568037229183 0.0613077631495546
AT4G27180_at 7.81040727322089 8.34202674591345 7.68609154731853 7.7252467610103 8.90288846071747 8.15171614179775 8.96701379379994 8.78791240496358 7.97134867207924 8.77537653320965 8.58419114440674 8.55973203337513 8.62634489933506 8.04836511653876 8.0827919439728 8.60864649975841 8.08240068920415 8.58813183088058 8.88617728020803 0.187402936446699 0.175228831005251 0.185141562162762 0.184621747866269 0.174348456450944 0.181262933192056 0.175672765023566 0.172818786983364 0.208098988347628 0.180889960394868 0.171909672706053 0.173604241519323 0.172595456937449 0.190710361933147 0.180026142076520 0.171909672706053 0.181920207754738 0.186633010727621 0.179323154115540 4 4|0 -|/ 13615076 13615884 13615389.667 13614866 13619162 - gene protein_coding_gene FALSE TRUE AT4G27180.1 ATK2 (ARABIDOPSIS THALIANA KINESIN 2); microtubule motor kinesin heavy chain subunit Identical to Kinesin-2 (Kinesin-like protein B) (ATK2) [Arabidopsis Thaliana] (GB:P46864;GB:Q9T047); similar to ATK5 (Arabidopsis thaliana kinesin 5), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G05190.1); similar to ATK3 (ARABIDOPSIS THALIANA KINESIN 3), microtubule motor [Arabidopsis thaliana] (TAIR:AT5G54670.1); similar to ATK1 (ARABIDOPSIS THALIANA KINESIN 1), microtubule motor [Arabidopsis thaliana] (TAIR:AT4G21270.1); similar to H0323C08.7 [Oryza sativa (indica cultivar-group)] (GB:CAJ86215.1); similar to Kinesin, motor re (GB:ABE93171.1); similar to Os04g0629700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053970.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) -0.253539817789233 -1.93683118677119 0.0870510148745812 1 2.37821868101897 16.7676010651842 -0.253539817789233 0.162384813975973
AT3G52030_at 7.26217520644183 7.19767146629968 7.66663637722424 7.35846554873831 7.91690139450947 7.32562814224197 7.71754122384448 7.48090204804701 7.27510466800314 7.44772933729121 7.03527142494238 6.83861521469412 6.95860687724536 7.00433185716909 6.54520504082847 7.16246228978637 6.85798273334843 6.95245809019202 7.75192340861559 0.188702204562403 0.189207795348394 0.186873070832651 0.187009170903006 0.185423320026573 0.199948295953851 0.190412692146459 0.184826807972683 0.194868351135189 0.184302186893948 0.185164440222780 0.180123089802640 0.181968898335753 0.193589323712758 0.191122265021659 0.179706856085824 0.185138826535754 0.186036937984938 0.187111107976315 3 3 + 19314508 19315145 19314754.364 19312850 19315205 + gene protein_coding_gene FALSE TRUE AT3G52030.1 F-box family protein / WD-40 repeat family protein similar to Os11g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065906.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.209941867045308 -1.93456981050192 0.0873604283691587 1 2.37512706052363 14.6962164237496 -0.209941867045308 0.122945827008893
AT3G17700_at 7.31555772245965 7.35817705983667 7.16821708930591 7.19972377729518 6.82406925925434 6.10022136012387 5.68877249256096 5.65415883785285 6.91806198676291 5.9052222760136 5.52217004137191 6.21686717694989 5.42198589693104 5.60628183984967 5.21724137852096 5.70210551029607 5.85734255444045 5.76263909535672 6.40053361966682 0.213590430114494 0.212422699057077 0.202175922119905 0.206521998469335 0.210347388216490 0.212971304832556 0.207079265646091 0.207429880530792 0.217988695855492 0.220354848227245 0.206242726420767 0.207481282823869 0.203846276111814 0.209461518202077 0.204087858783280 0.213016422111786 0.218796418427350 0.202660526649385 0.205920678542967 3 3|0 +|/ 6051891 6052427 6052221.8 6048922 6052556 + gene protein_coding_gene FALSE TRUE AT3G17700.1 CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1); calmodulin binding / cyclic nucleotide binding / ion channel cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels. Identical to Probable cyclic nucleotide-gated ion channel 20, chloroplast precursor (Cyclic nucleotide-binding transporter 1) (CNGC20) [Arabidopsis Thaliana] (GB:Q9LD37); similar to ATCNGC19 (cyclic nucleotide gated channel 19), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G17690.1); similar to Os06g0207700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057101.1); similar to Putative cyclic nucleotide-gated ion channel 8 (Cyclic nucleotide- and calmodulin-regulated ion channel 8) (GB:Q9FXH6); similar to Os02g0773400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048268.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821) -0.212859382057947 -1.93443182840754 0.0873793417567809 1 2.37493845804087 12.6992464402674 -0.212859382057947 0.125743353276075
AT4G02530_at 10.4612860311115 10.3833402991601 10.0632875466218 9.88327225695327 10.4883817988297 9.98915896732547 11.4383449052349 11.0945181186974 10.9092087129455 11.0727097747887 11.4877819189800 11.5340018767560 10.8871818410463 11.1633349551448 11.8422716560135 11.2701981468941 10.8914978911172 11.2687136465198 10.8639196396861 0.0919463356188583 0.091387900856413 0.0938699836774335 0.0930131777150888 0.0892203566156566 0.095830143526444 0.0908519154911505 0.0900796898302656 0.099899609744589 0.091645770817596 0.0942273155938462 0.0898050151607145 0.0933188895481855 0.0902381327201203 0.0913297502965562 0.0910304681588571 0.0936651542870407 0.0915807362569207 0.0894600242805992 4 4|0 -|/ 1112388 1113910 1113337.1 1112141 1114029 - gene protein_coding_gene FALSE TRUE AT4G02530.1 chloroplast thylakoid lumen protein Identical to Thylakoid lumenal 16.5 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O22773;GB:Q8L985;GB:Q94BU6;GB:Q9M110); similar to Os06g0705100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058514.1) -0.196918581849775 -1.93396076155608 0.087443940965053 1 2.37429460809202 21.5960664658413 -0.196918581849775 0.110256511608728
AT1G24575_at 7.50133927313217 7.97941890045689 7.00039347588903 7.03594249246109 5.45480304256594 5.50126774159521 5.20561941569577 5.32108175096853 4.44255889640749 4.32072569551754 4.40452603570000 4.02931118966877 3.88042290724135 4.26271901493772 3.6847860733409 4.41935456289854 4.82557984766697 3.16082005603216 3.76852404566226 0.211596020227834 0.225630131806194 0.216975627406649 0.224219307944202 0.210013452996578 0.214624156853888 0.209428135844541 0.222069327602258 0.220568270937054 0.209428135844541 0.215125928619934 0.2182876773 0.212253441685592 0.211911709194291 0.219912293900550 0.209428135844541 0.216938801035081 0.215402306211030 0.209428135844541 1 1 - 8711199 8711438 8711337.364 8711023 8711515 - gene protein_coding_gene FALSE TRUE AT1G24575.1 unknown protein -0.173796365931077 -1.93381932645623 0.087463345400375 1 2.3741013059657 10.5053380149947 -0.173796365931077 0.0857126283707605
AT1G66670_at 11.6337892136776 11.6266677511882 11.8287298365164 11.7506004652174 11.8850592398727 11.4712734238950 11.3676074652931 10.9757553870447 10.6336601835805 10.6047552423375 10.4074119994908 10.3560562073968 10.5101765700265 10.6020815902535 10.2582605333046 10.7016495425787 10.6318922463121 10.4497513037579 10.1107169284640 0.0933003663100591 0.0880655449377115 0.0905805046374171 0.0901875209073405 0.0880655449377115 0.090535873808008 0.0882041478316378 0.0903743029375344 0.0942298698944828 0.0880655449377115 0.0886300710810915 0.0880655449377115 0.089845377881998 0.0897383256993758 0.0961289340938554 0.0880655449377115 0.0976105970562834 0.0913798740255474 0.0891012836961068 1 1 - 24867693 24868434 24868058.182 24867448 24869365 - gene protein_coding_gene FALSE TRUE AT1G66670.1 CLPP3 (Clp protease proteolytic subunit 3); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to CLPP4 (Clp protease proteolytic subunit 4), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT5G45390.1); similar to ClpP putative protein [Brassica napus] (GB:CAC80640.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.186455000710284 1.93366272174813 0.08748483585138 1 2.37388727668241 22.0371207398052 0.186455000710284 0.0995510647613233
AT1G58180_at 9.8419451868178 9.82875362775306 10.4362099007438 10.2229707706884 10.6814079481954 10.3611246935248 9.72590942983425 9.61824141527947 9.7439943343739 9.49490160637855 9.4611353606374 8.45084834387172 9.44169214760304 9.55460878773604 8.20684608694712 9.43804969385244 9.2785103721685 9.51332454387381 9.32001614017932 0.12289752696314 0.119911525775247 0.126347309023783 0.125203041415075 0.127105896514612 0.123416556205212 0.125301941165301 0.125547374285108 0.134575872345695 0.128201400454517 0.119911525775247 0.137994878487814 0.122978780114071 0.125990577189173 0.132969331399568 0.126079558788446 0.14059953507879 0.126157960981849 0.119911525775247 1 0|1 /|- 21542173 21542532 21542405.429 21541600 21543579 - gene protein_coding_gene FALSE TRUE AT1G58180.1|AT1G58180.2|AT1G58180.3 carbonic anhydrase family protein / carbonate dehydratase family protein|carbonate dehydratase/ zinc ion binding similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); similar to carbonic anhydrase 3 [Flaveria linearis] (GB:ABC41659.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765)|similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to carbonic anhydrase 3 [Flaveria pringlei] (GB:ABC41658.1); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); similar to carbonic anhydrase 3 [Flaveria linearis] (GB:ABC41659.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765)|similar to carbonic anhydrase family protein / carbonate dehydratase family protein [Arabidopsis thaliana] (TAIR:AT4G33580.1); similar to carbonic anhydrase 3 [Flaveria pringlei] (GB:ABC41658.1); similar to Os09g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063409.1); contains InterPro domain Carbonic anhydrase, prokaryotic and plant; (InterPro:IPR001765) 0.160102735071330 1.93335469082678 0.0875271208288236 1 2.37346631218690 19.4334525103031 0.160102735071330 0.0691826377126161
AT2G42670_at 5.21980430802488 5.28753828334574 4.80440777232127 5.23593455271878 5.03281533897727 5.1715471286781 4.2617918896026 4.70580475904547 5.14195435228305 4.59974885006087 5.04817192179884 5.11493836162166 5.3687995255091 5.44582633449731 4.7823062967765 5.30615056548875 5.07994693395747 5.06076896992847 5.10762844172662 0.205632147843686 0.208892801054065 0.213221702891733 0.218060153689219 0.207287288034057 0.207621239994082 0.204602588821456 0.204268640103551 0.207330548008630 0.213055327685377 0.204268640103551 0.204268640103551 0.213655400632451 0.205751689027680 0.207592603256283 0.20466558773834 0.208502968901849 0.217060912571501 0.212777449510843 2 2 - 17779126 17780309 17779602.727 17778853 17781724 - gene protein_coding_gene FALSE TRUE AT2G42670.1|AT2G42670.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58670.2); similar to OSJNBb0040D15.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04411.2); similar to Os04g0151900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052116.1); similar to H0820C10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65971.1); contains InterPro domain Protein of unknown function DUF1637; (InterPro:IPR012864); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.196763893588134 1.93074793605801 0.0878857451570184 1 2.36990472952942 10.0152759182830 0.196763893588134 0.110429649788801
AT1G67870_at 12.3109372298206 11.8336724316936 12.4625782649435 11.7956832786639 12.0154238513472 11.3762241797785 12.5889212963168 11.9773627487399 12.2278938192512 12.61919552225 11.7498357856900 11.8998911062203 12.6013398510482 12.0990245990778 11.4087993108875 12.6351640721 12.5606991404385 11.7961807699176 12.4823845102398 0.0632871340727098 0.0631186628278116 0.0642707238104685 0.0633576677787496 0.0628826142841124 0.065910797735578 0.0628679901708837 0.0637450312480425 0.0663814839399577 0.0634325776603177 0.0629876140139783 0.0624229676154801 0.061328964723294 0.0643336342399381 0.063061487458631 0.061328964723294 0.0709653961483429 0.0654579279572618 0.0637002320656139 1 1|0 -|/ 25453273 25454318 25453538.2 25453030 25454675 - gene protein_coding_gene FALSE TRUE AT1G67870.1 glycine-rich protein similar to ATEM1 (Early methionine labelled) [Arabidopsis thaliana] (TAIR:AT3G51810.1); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT2G05440.2); similar to ENSANGP00000018997 [Anopheles gambiae str. PEST] (GB:XP_309858.3) -0.307268577058629 -1.93058617057939 0.0879080461871366 1 2.36968376344965 24.3136128001644 -0.307268577058629 0.208752325999364
AT4G01320_at 9.11019487958565 9.12409339609079 8.92557034889947 8.84323067531395 8.94850190739647 8.69726903359555 8.7118487993199 8.65114549093451 8.54104143332226 8.07934813669504 7.77767415839344 8.12406888806651 8.0597838432575 7.97815321055981 8.00884750618965 7.6553422290818 8.221156549696 7.46333492940444 7.84440929128988 0.150949854756195 0.148491746802384 0.148407457995484 0.153291383822251 0.148508184330117 0.150439255884577 0.160568041046013 0.148810661074411 0.165741721826100 0.154746553547417 0.155791060768732 0.157943523804449 0.151283693888662 0.14838216765951 0.163252051603300 0.149677971501851 0.162062916402664 0.162481600423326 0.155624173031453 4 4|0 +|/ 547894 548773 548410.222 545796 549261 + gene protein_coding_gene FALSE TRUE AT4G01320.1 ATSTE24 CAAX protease with broad substrate specificity. Localized exclusively to the endoplasmic reticulum. similar to Os02g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047739.1); similar to CAAX peptidase [Hordeum vulgare subsp. vulgare] (GB:CAL26913.1); contains InterPro domain Peptidase M48, Ste24p; (InterPro:IPR001915) -0.144782719809632 -1.92949713362348 0.0880583216774118 1 2.36819633635366 16.9094708754421 -0.144782719809632 0.047004602778992
AT3G61900_at 4.37043197506039 5.43239614691296 5.7061950436049 6.22280742950712 5.94468847033593 6.0636822100304 4.76998928226244 5.82041473300693 4.56403734851034 5.16294734464406 4.51043437356005 3.79706737264011 4.68866465309464 4.94558748455348 3.37850789327535 5.19048694762868 5.49223564850977 4.3148595027845 4.22327929706541 0.292108299495685 0.283152991478731 0.285384918890734 0.288967732374373 0.288171472708187 0.308175938365102 0.286622463796186 0.292236524746831 0.287073331738209 0.288893365329583 0.290139659660429 0.284828222611406 0.283518473950024 0.281741037060043 0.294371380518235 0.281741037060043 0.293162292520693 0.293799338900751 0.292587035990404 3 3|0 +|/ 22936803 22937320 22937034.5 22936788 22937354 + gene protein_coding_gene FALSE TRUE AT3G61900.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G46690.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE91172.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.387838870912399 1.92938283905162 0.0880741073120068 1 2.36804024684510 10.1362349019630 0.387838870912399 0.274290790361783
AT2G47320_at 10.4136840935115 10.4885235756187 10.2766181337703 10.4144405136457 10.5673780826238 10.2381405908395 10.1813412393699 10.1745431803191 9.91457496388298 9.63778420546712 9.93997356629756 10.0071396582294 9.90654171065987 9.96207912754672 10.2354764466165 9.8157175745449 9.81006289990792 10.2042725873601 9.65049412024958 0.109719345506838 0.103869082385697 0.109256386498819 0.107935891333023 0.108113967189029 0.105882058439736 0.106223224141776 0.105513751248397 0.110127623398944 0.109985211461616 0.106157413865043 0.107402687125402 0.103869082385697 0.105123914864789 0.111201917836784 0.104604837320594 0.11199165665424 0.106719165685593 0.107282643268841 2 2|0 +|/ 19434907 19435871 19435411.4 19434442 19436003 + gene protein_coding_gene FALSE TRUE AT2G47320.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein Identical to Peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial precursor (EC 5.2.1.8) (PPIase CYP21-3) (Rotamase CYP21-3) (Cyclophilin of 21 kDa 3) (CYP21-3) [Arabidopsis Thaliana] (GB:Q94A16;GB:O22906); similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT3G66654.2); similar to Os07g0476500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059626.1); similar to hypothetical protein DDBDRAFT_0216615 [Dictyostelium discoideum AX4] (GB:XP_646869.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.155247412271900 1.92921579038100 0.08809718386101 1 2.36781211778561 20.2040548643433 0.155247412271900 0.0631209611933763
AT1G23310_at 13.0191935349663 13.1676648497276 13.2359548136180 13.2941314459529 13.3486698109756 13.3395041526180 13.6276931275466 13.5807463050215 13.8653542218861 13.8025051401523 13.6594001376540 13.6129207951571 13.7034828809879 13.6197777203807 13.2876854416301 13.7488090829550 13.5939006006963 13.7641507346798 13.8867325462443 0.0790485994993439 0.0772511744503328 0.0812719838770552 0.081067444625297 0.0776263314768372 0.0821611250968701 0.0824067402144423 0.0784230348614993 0.0882501320852111 0.0811530117168362 0.08681720788995 0.08037780360171 0.0805800635083932 0.0847796801873911 0.081914796650367 0.0786412319673332 0.0852553200474605 0.0772511744503328 0.0781069472757362 1 1|0 -|/ 8268803 8269701 8269251.4 8268393 8271922 - gene protein_coding_gene FALSE TRUE AT1G23310.1|AT1G23310.2 GGT1 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 1) Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway. similar to AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2), alanine transaminase [Arabidopsis thaliana] (TAIR:AT1G70580.4); similar to AlaT1 [Vitis vinifera] (GB:AAZ43369.1); similar to AlaT1 [Vitis labrusca] (GB:AAZ43368.1); similar to alanine aminotransferase [Oryza sativa (indica cultivar-group)] (GB:AAO84040.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.136012055175507 -1.92860557823684 0.088181529219094 1 2.36697884087780 27.0643430352343 -0.136012055175507 0.0288104912031890
AT2G03510_at 10.0765414639278 10.1222701460835 9.85103181691884 10.0167511301313 9.64722202055655 9.47280075978985 9.4652730781261 9.35274174301112 8.9796083607854 8.50484368800578 8.3565707611949 8.6753024978379 8.17453763778163 8.58361592659001 8.3928330340672 8.23169000441274 8.40870093870397 8.50507055013152 8.60891685411991 0.157788376698409 0.154749240425556 0.152049289628764 0.155739647610251 0.157065742177473 0.152066564885655 0.153933781652570 0.160672532964997 0.151318827450762 0.152399063952169 0.156303664554594 0.148167008896466 0.155123849515346 0.151108149787196 0.149410589741088 0.15207662380769 0.154864060605679 0.148902130586368 0.156408052543382 2 0|2 /|+ 1068045 1068858 1068409.5 1066603 1069146 + gene protein_coding_gene FALSE TRUE AT2G03510.1 band 7 family protein similar to SPFH domain / Band 7 family, putative [Medicago truncatula] (GB:ABE90939.1); contains InterPro domain Band 7 protein; (InterPro:IPR001107) -0.144502320700859 -1.92853641153111 0.088191094508073 1 2.36688439562057 18.3074939213900 -0.144502320700859 0.0466413881061350
AT2G33410_at 7.1647710924811 7.57359878598459 7.3151314964409 7.26305657282426 7.21403150869399 7.61516605429659 6.55806111966653 6.63695368208205 7.59072935080003 7.24684862233509 7.02933199882789 7.38355576282699 7.69320008798864 7.17054702700142 7.4580915711367 7.20466957689046 7.44375064229514 7.16349322012044 7.1026036047025 0.150676293719089 0.152762838232865 0.149955152020055 0.158997490984091 0.158001532281429 0.152362501326337 0.155934720565402 0.156504941109533 0.160107737454406 0.152493778839652 0.149991429566455 0.152833248341209 0.153470633431387 0.159089995780677 0.151844760078877 0.148517915373208 0.155774858413325 0.162210191925611 0.156492966088771 2 2 + 14163918 14164419 14164178.091 14162947 14164838 + gene protein_coding_gene FALSE TRUE AT2G33410.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT4G14300.1); similar to Os10g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064824.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.186718182308561 1.92744985285292 0.088341488192479 1 2.36540087726927 14.4834582116413 0.186718182308561 0.100458916617556
AT3G17930_at 9.75734538234897 9.80694494215034 9.85530602029282 9.85872949537532 9.91899576468395 9.6517589352484 10.3748158831375 10.2867111648711 9.58725191276424 10.0097904232479 9.78508363599221 9.60576209391464 9.70092424727365 9.79545438842873 9.68534052588512 9.89866844055472 9.84556554970918 9.50102755000848 9.75503029740004 0.101700333972768 0.102054966584425 0.104835956671410 0.101806338397031 0.0990285249151365 0.110489391770237 0.102674702524171 0.098647529177715 0.108763252161330 0.098647529177715 0.0993951545874119 0.098647529177715 0.100783372343249 0.102830463438200 0.0991927345081689 0.098647529177715 0.107252607437976 0.102745061646530 0.098647529177715 3 3|0 -|/ 6142488 6143189 6142711 6142135 6143316 - gene protein_coding_gene FALSE TRUE AT3G17930.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56506.1); similar to Os01g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044558.1) -0.146026348196699 -1.92694915098263 0.0884108740648078 1 2.36471734443091 19.6944522060677 -0.146026348196699 0.0494493825366319
AT4G36290_at 5.11962442456544 5.1405014881952 5.06239673843375 4.91228916286578 5.3584636616718 5.08785785251575 4.87201469274629 4.87731980352041 4.75150675391491 5.1217624281487 5.45871871357678 5.38702603550195 4.91878035430406 5.33500290630569 5.05745657818212 4.85515225321971 5.3502817404969 4.98259270450673 5.04796977146747 0.227235856649589 0.221655534980231 0.221866403359851 0.226242487622068 0.218877415207612 0.228852462800911 0.217326386588045 0.219837319426804 0.215529832537935 0.214492503888686 0.209596604983321 0.216440260780684 0.215677707507086 0.21393699625143 0.214567200557214 0.21571419736503 0.230140812926136 0.222657308702259 0.224584621993324 4 4|0 -|/ 17169707 17170588 17170223.444 17169467 17173218 - gene protein_coding_gene FALSE TRUE AT4G36290.1 ATP-binding region, ATPase-like domain-containing protein similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36280.1); similar to ATP-binding region, ATPase-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G36270.1); similar to Os10g0181700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064253.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK70637.1); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594) 0.148633422266493 1.92679216239602 0.0884326398064224 1 2.36450304375608 10.1247448423670 0.148633422266493 0.0536814853549593
AT2G20280_at 7.19643678567643 7.39043188859959 7.05475553726664 7.15157605742122 7.08864940316573 6.99722703113853 6.90123229209469 7.27223200816284 6.77319066362596 6.76695275121327 6.39166021953357 6.97323782744387 6.71275917077345 6.57465625673816 6.45567162436562 6.6277765460565 6.51706269195679 6.6969452681276 6.95475018507136 0.218101825792809 0.208184498798038 0.206087678611711 0.218620605448648 0.219359936275007 0.208687690090517 0.205391128242452 0.220281777114568 0.221694438276614 0.208213779447619 0.206790403193584 0.208185945637949 0.206818805404408 0.208150697950099 0.207207993924018 0.204809997501335 0.208371207826141 0.216677294846265 0.219344609208149 2 2|0 -|/ 8747155 8747986 8747704.7 8746992 8749430 - gene protein_coding_gene FALSE TRUE AT2G20280.1 zinc finger (CCCH-type) family protein similar to putative uncharacterized hypothalamus protein HT010 [Oryza sativa (japonica cultivar-group)] (GB:BAD73384.1); similar to Os01g0834700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044722.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.164970617865557 -1.92675153345489 0.0884382736535509 1 2.3644475832875 13.8567438257380 -0.164970617865557 0.0760273774338367
AT1G32540_at 9.18205069897763 9.25891872628613 9.18986716249932 9.04982707310652 10.1441389628004 9.55360972517966 9.55904177165653 9.36274189548896 9.38549792004232 9.08435769388746 9.53954980480854 10.0116029754711 9.36484099582235 9.29835358392477 9.84209796774053 9.24136189471569 8.69500290461167 9.66260455990773 9.14965933230999 0.104586801740435 0.100733355551043 0.098541550273861 0.109139607623322 0.102678180133126 0.105162627245010 0.0987503286950593 0.102975324358895 0.102210236193189 0.107624483252648 0.0963310968289788 0.097964021155375 0.0976578771860502 0.100972842958676 0.100144921232466 0.0979656165624729 0.104789985665063 0.0980846868851631 0.0994653018945924 1 0|1 /|+ 11768422 11769533 11768795.714 11767484 11769878 + gene protein_coding_gene FALSE TRUE AT1G32540.1|AT1G32540.2 LOL1 (LSD ONE LIKE 1) Encodes a protein with 3 plant-specific zinc finger domains that acts as a positive regulator of cell death. similar to LSD1 (LESION SIMULATING DISEASE) [Arabidopsis thaliana] (TAIR:AT4G20380.7); similar to LSD-One-Like 1 [Brassica rapa] (GB:BAD95789.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735) 0.197047155794763 1.92616024507861 0.088520303912203 1 2.36364049023963 18.744240410977 0.197047155794763 0.111183863001096
AT1G64630_at 6.0088251481464 5.72632731457332 5.43636279466296 5.6577796180233 6.62550181659518 5.92565801742039 5.82212624199627 5.37075211902751 4.42260064102105 4.44596262077916 4.30658026542899 4.91728486561346 4.99375856774938 4.94871516068117 4.5104328126775 4.82183334097103 5.05360824941459 5.09349411059782 4.68592017315583 0.251285547866194 0.23810529595306 0.240922289603539 0.244860050119921 0.241451267472147 0.239694325865849 0.243919883598150 0.23810529595306 0.251658493669375 0.243156053508235 0.239470601528749 0.239971875120077 0.23810529595306 0.241570703452320 0.245226123812917 0.238389840287454 0.247290259032999 0.239974738362517 0.242499270162822 1 1|0 +|/ 24025088 24025696 24025460.8 24023153 24025957 + gene protein_coding_gene FALSE TRUE AT1G64630.1 protein kinase family protein similar to WNK8 (Arabidopsis WNK kinase 8), kinase [Arabidopsis thaliana] (TAIR:AT5G41990.1); similar to ZIK1 protein [Medicago sativa] (GB:CAC84087.1); similar to Os02g0672800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047709.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.245935066197986 1.92591142496399 0.0885548447576509 1 2.36330088206480 10.4961039171192 0.245935066197986 0.156932089083935
AT4G27440_at 12.1542529666430 12.3009603649271 10.9825888574276 11.0399992343360 11.8402811052350 11.4386864640103 11.4198169912403 11.1645104080963 11.6969388503040 11.4299706396218 12.4892612643425 12.8171873453961 11.8357210548555 12.1452389212147 12.5834441555059 11.6017337506560 11.5630044798778 12.0709499871861 10.940705926414 0.091510109494854 0.0896754331543739 0.0990145447773136 0.0918564322849349 0.0899985156110387 0.0939764833494183 0.0906846269762417 0.0897157792170276 0.0995939843619372 0.0934134834878542 0.0897421341229706 0.0896754331543739 0.0909485853960557 0.0934740607898583 0.0933927978385112 0.0896754331543739 0.09136257562782 0.0957493377194839 0.0920556673667175 4 4|0 +|/ 13726381 13727087 13726709.6 13725552 13727359 + gene protein_coding_gene FALSE TRUE AT4G27440.1|AT4G27440.2 PORB (PROTOCHLOROPHYLLIDE OXIDOREDUCTASE B); oxidoreductase/ protochlorophyllide reductase light-dependent NADPH:protochlorophyllide oxidoreductase B Identical to Protochlorophyllide reductase B, chloroplast precursor (EC 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) (PORB) [Arabidopsis Thaliana] (GB:P21218;GB:Q42537); similar to PORA (Protochlorophyllide reductase A), oxidoreductase/ protochlorophyllide reductase [Arabidopsis thaliana] (TAIR:AT5G54190.1); similar to NADPH:protochlorophyllide oxidoreductase A (GB:AAC49043.1); similar to protochlorophyllide reductase (EC 1.3.1.33) precursor - garden pea (GB:S20941); similar to NADPH:protochlorophyllide oxidoreductase [Nicotiana tabacum] (GB:BAB93003.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Light-dependent protochlorophyllide reductase; (InterPro:IPR005979); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.173974773479147 1.92569061277618 0.0885855083461471 1 2.36299951346168 23.2897317616524 0.173974773479147 0.0867483380074575
AT1G76360_at 8.83225677392325 8.82787015035478 9.16681729855556 9.13094334540599 9.41573157396251 9.1958881373146 8.98292324122934 9.03423038895098 8.63738501423002 8.97136251093854 8.89734931744287 8.72885020660597 8.97192165950634 9.0428861686789 8.46038673489188 8.59636829201106 8.63803078929893 8.81966243536357 8.78074328358268 0.117768690019974 0.119715877672823 0.111759095147889 0.114914651497555 0.117879676545166 0.115682541722973 0.114409337035482 0.114088606111967 0.121430086291356 0.118195083515852 0.114369763489844 0.114716914641198 0.117033005636997 0.119368299161300 0.117723082051492 0.111759095147889 0.12701244558721 0.126458268363164 0.114732535356827 1 1 - 28648229 28648733 28648457.455 28647932 28651489 - gene protein_coding_gene FALSE TRUE AT1G76360.1 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G17220.2); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.140479982209802 1.92533138325230 0.0886354152072766 1 2.36250925496229 17.8562970570748 0.140479982209802 0.0395647558859246
AT3G13440_at 4.20238550971708 5.10478985867373 4.219859709829 4.62465381758624 5.03986651831635 5.21173595736378 4.01589384966016 5.09945208183448 5.21035374016192 5.18581033855547 4.91996777893326 4.48531464867662 4.83186700662915 4.12349707016251 4.21451497669532 5.08950240408848 4.04167693466634 4.26278395231115 5.77953765725763 0.233388811094382 0.229820743266579 0.244728716863081 0.229797134423791 0.240733506537282 0.236797908679279 0.23610064547233 0.229797134423791 0.245151858022673 0.234353257488661 0.232018817948616 0.232322110933149 0.240089279505497 0.233459133713384 0.233288092699750 0.234540002169023 0.243352673781545 0.230342350416702 0.23276888054949 3 3 + 4378786 4379315 4379007.818 4377104 4379582 + gene protein_coding_gene FALSE TRUE AT3G13440.1 similar to Methyltransferase small domain, putative [Medicago truncatula] (GB:ABD33115.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) -0.363680653167755 -1.92491211992127 0.0886936963169963 1 2.36193710399453 9.63385025046195 -0.363680653167755 0.255619337705951
AT2G43535_at 6.18208428866127 6.16787426190952 5.04615600203206 4.78764946431643 5.93365776120846 5.48454252676879 6.75835878886749 5.95042308128575 5.80218409262257 6.27523755390943 6.54742924449551 7.00477823989925 6.27627355804626 7.1276282063378 5.65465197913999 5.89256365956516 6.19058379611154 6.10461860732234 5.6516696428506 0.240993635933817 0.246416852288863 0.258498183372591 0.251469371838820 0.231496870413182 0.238722194354202 0.236537040714097 0.238812590463569 0.243739628777613 0.242600971325183 0.233920071091787 0.231496870413182 0.242362493418558 0.238022856565545 0.235430960581922 0.231496870413182 0.247673563215355 0.239424290595961 0.236904090876967 2 2|0 +|/ 18078214 18078586 18078436.3 18078050 18078753 + gene protein_coding_gene FALSE TRUE AT2G43535.1 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. similar to ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G43510.1); similar to Trypsin inhibitor 2 precursor (MTI-2) (GB:P26780); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.255782425847856 -1.92145189629314 0.0891760931957815 1 2.35721667746050 11.9185997757940 -0.255782425847856 0.166122756736283
AT1G14690_at 8.98561583862239 9.05773127986849 9.79916987195833 9.5889142569070 9.98675285259422 9.89787833081274 9.16549406701068 9.16701264942076 9.6599606485219 9.5182558279835 9.31162873285652 8.8312599866126 9.26510618562086 9.213419463666 8.61411769992295 9.48881352986384 9.1284978826102 9.21518701867643 9.548763694236 0.186048014013073 0.152072519366975 0.185954787481451 0.152072519366975 0.152072519366975 0.152072519366975 0.181432325145881 0.152319724397764 0.190249713655345 0.163143202098218 0.177101685714295 0.181340889675204 0.152072519366975 0.173370940584233 0.183696721530033 0.152072519366975 0.174280499362637 0.174509241008755 0.152072519366975 1 1 - 5052100 5052127 5052114 5051755 5055247 - gene protein_coding_gene FALSE TRUE AT1G14690.1|AT1G14690.2 similar to ATMAP65-6, microtubule binding [Arabidopsis thaliana] (TAIR:AT2G01910.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936) 0.141029562451189 1.91994724655903 0.0893866386573319 1 2.35516492916149 18.8106530780956 0.141029562451189 0.0414280891548711
AT1G67330_at 5.94861630291946 6.81459717386441 5.43576541699994 6.08330444308352 5.87790161029123 6.511233013625 5.9983863181386 6.96917372047685 5.09640439308677 5.27296479207006 4.22939922545147 5.58165285673201 5.93215868720892 5.61662958370425 4.38992394618919 4.52943558288282 4.92544534368468 4.75506396654109 5.56351255960959 0.222550451579648 0.225293905011514 0.221413587178726 0.226712468957468 0.218538163478096 0.221591119689866 0.219411313488797 0.221450465110447 0.227463145113988 0.227302245998718 0.225962277343209 0.220694845166408 0.223054719925680 0.240297461966239 0.242396004529452 0.221550754783068 0.222421313630130 0.227699251402232 0.226456704522973 1 1 + 25218074 25218607 25218440.818 25217515 25218837 + gene protein_coding_gene FALSE TRUE AT1G67330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27930.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) -0.385819595194705 -1.91914886754902 0.0894985479882271 1 2.35407647523286 11.3578343652439 -0.385819595194705 0.274321202112431
AT2G48120_at 5.19104198983807 5.34584063461523 5.19336271663979 5.41887142563205 5.42279064972693 5.48260517271132 5.22849858226488 5.09758400706646 4.45507352926627 5.15870714613681 5.10652350974495 5.14270668248672 4.85083741256708 4.532865377577 5.43009604305587 5.44070448632156 5.37455538340486 4.86098522400955 5.26710683517858 0.199183332884008 0.194841191798266 0.195982043739955 0.195042959493672 0.204177639710735 0.20396164923759 0.200329598599783 0.196090117004071 0.208049074250560 0.205313980073689 0.195934304664458 0.196346961352203 0.197179061913250 0.20175649407696 0.200757870954062 0.201323975873032 0.210121469248941 0.205330057254353 0.198208465455677 2 2|0 +|/ 19687568 19688384 19688048 19686800 19688616 + gene protein_coding_gene FALSE TRUE AT2G48120.1|AT2G48120.2 PAC (PALE CRESS) The pale cress (pac) mutant affects chloroplast and leaf development; mutants are ABA-deficient and accumulate lower levels of carotenoids and chlorophyll compared to wild type. PAC is probably involved in chloroplast mRNA maturation. Three alternative transcripts of this gene exist. similar to moesin actin-binding domain homologue (GB:AAA21761.1) 0.147889807883382 1.91874096720983 0.0895557751640285 1 2.35352043146924 10.3239269481901 0.147889807883382 0.0534885067550909
AT1G75760_at 5.43435762104431 5.75264766803654 5.32680859070509 5.23625359444472 6.03496627200095 5.21912442105208 5.24941440123458 5.34472808132203 3.62835788227404 4.264588427487 5.18122062497972 4.68272325597304 4.95633426380364 5.04779394417992 4.32312472222972 4.43225238071312 4.49601855902636 4.39379125298572 4.75727295011375 0.250954855053557 0.247590286155592 0.26409131071481 0.252441407357768 0.257945347120522 0.268644095776736 0.250897467011752 0.256465852203054 0.275029979935133 0.250139716400924 0.262899622169625 0.248812755556544 0.247590286155592 0.256161564650143 0.259868076773795 0.249039257098102 0.261010653251323 0.253831224784469 0.253771940045666 1 1|0 -|/ 28450787 28451588 28451111.222 28450293 28452307 - gene protein_coding_gene FALSE TRUE AT1G75760.1 ER lumen protein retaining receptor family protein similar to ER lumen protein retaining receptor family protein [Arabidopsis thaliana] (TAIR:AT1G19970.1); similar to ER lumen protein-retaining receptor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33333.1); contains InterPro domain ER lumen protein retaining receptor; (InterPro:IPR000133) 0.240709449418076 1.91725494058729 0.0897645551295603 1 2.35149503944318 9.90273614561904 0.240709449418076 0.15324783274395
AT3G05060_at 5.75328947840067 5.75830102738548 5.11869596451382 5.67044350519732 5.25489395862718 4.95047682716358 6.00204876027996 5.76917787382673 4.82355950290371 5.12425161235763 4.54630831655213 5.50143814388305 5.05881889515149 5.07465943291747 5.94569989885412 5.14522479137571 5.1303035860461 4.79392318552417 4.99180896189663 0.204147234252112 0.212203841457200 0.212408136619578 0.206872106278821 0.211472548803736 0.209203699156966 0.209430935507275 0.214891018510695 0.225495788718527 0.207611711267051 0.204147234252112 0.221979210798179 0.215382778092232 0.209905475304074 0.213465166172145 0.204147234252112 0.210439218775642 0.207602102096509 0.208317938068549 3 3 - 1413221 1413980 1413761.909 1412873 1415972 - gene protein_coding_gene FALSE TRUE AT3G05060.1 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; encodes NOP58-like protein similar to SAR DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G27120.1); similar to Pre-mRNA processing ribonucleoprotein, binding re (GB:ABE85418.1); similar to matrix attachment re (GB:CAK22424.1); similar to MAR-binding protein [Nicotiana tabacum] (GB:BAB41076.1); contains InterPro domain NOSIC; (InterPro:IPR012976); contains InterPro domain NOP5, N-terminal; (InterPro:IPR012974); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region; (InterPro:IPR002687) -0.201201524431184 -1.91703149799255 0.08979598786247 1 2.35119054243667 10.5993761195947 -0.201201524431184 0.116262484718655
AT4G38060_at 7.88441911094853 7.9900965817976 8.66046000873556 8.74577544403712 8.74599282725546 8.3838915799944 8.13932455574533 8.17072569672237 7.52383526704282 8.12783392081671 7.40853128296394 7.05824207639864 8.21331284757349 7.67868592067939 6.57227559697764 8.30027713319813 8.57207880799453 7.40375922093746 8.1216225165853 0.155251636176558 0.152137388074996 0.156338989883624 0.148661604815644 0.155900785381865 0.157396281209707 0.155839611881909 0.149329644910053 0.159256399954541 0.157778629478402 0.157248923321110 0.161792504742343 0.150891648352593 0.155383894462736 0.164814839098102 0.150064304556189 0.162916066722849 0.158437296655070 0.150171451738377 4 4 - 17873999 17874339 17874139.455 17873479 17874798 - gene protein_coding_gene FALSE TRUE AT4G38060.1|AT4G38060.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65480.1); similar to unknown [Lycopersicon esculentum] (GB:AAK84476.1) 0.157176635697152 1.91658286949643 0.089859130224154 1 2.35057920899747 16.1277486901489 0.157176635697152 0.0671465021637798
AT4G23650_at 8.94721604400763 9.30039529534591 8.87888411415625 8.97756904549004 9.024153715801 8.7421257599227 8.62914638473786 8.66686433587143 8.9525171742194 8.69822140271644 9.13827437014715 9.47594271470135 8.86054410176991 8.86237374394286 8.87939778597324 9.071542453952 8.73221161621435 9.28565585476187 8.51773013937876 0.153188815013362 0.145813412600233 0.153976076150764 0.142779757939593 0.151141112554012 0.148828746694579 0.144286969740388 0.150358435097257 0.150027730961456 0.146158064035397 0.155577431501473 0.144176222981222 0.145418803602817 0.149322417704513 0.149576151564161 0.143165726210677 0.151411852538995 0.146834657784743 0.144132886230826 4 4|0 -|/ 12324982 12325875 12325554.889 12324768 12327469 - gene protein_coding_gene FALSE TRUE AT4G23650.1 CDPK6 (CALCIUM-DEPENDENT PROTEIN KINASE 6); anion channel/ calcium- and calmodulin-dependent protein kinase/ kinase Encodes calcium dependent protein kinase 3 (CPK3), a member of the Arabidopsis CDPK gene family. CDPKs contain an intrinsic Ca2+-activation domain with four EF hand Ca2+-binding sites. CDPKs protein kinases have been proposed to function in multiple plant signal transduction pathways downstream of [Ca2+]cyt elevations, thus transducing various physiological responses. CPK3 is expressed in both guard cells and mesophyll cells. Functions in guard cell ion channel regulation. ABA and Ca(2+) activation of slow-type anion channels and, interestingly, ABA activation of plasma membrane Ca(2+)-permeable channels were impaired in independent alleles of single and double cpk3cpk6 mutant guard cells. Furthermore, ABA- and Ca(2+)-induced stomatal closing were partially impaired in these cpk3cpk6 mutant alleles. CPK6 is also a member of the Arabidopsis CDPK family. similar to CPK17 (calcium-dependent protein kinase 17), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G12180.1); similar to CPK33 (calcium-dependent protein kinase 33), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G50700.1); similar to CPK34 (calcium-dependent protein kinase 34), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G19360.1); similar to CDPK [Ipomoea nil] (GB:ABC47163.2); similar to putative calcium-dependent protein kinase [Triticum aestivum] (GB:CAF18446.1); similar to EPS15 homology (EH); Protein kinase [Medicago truncatula] (GB:ABE79749.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.167598784298215 1.91608800006628 0.0899288298278575 1 2.34990492054300 17.7763272047271 0.167598784298215 0.0803235996918383
AT3G62560_at 8.9886882404307 9.16628753717477 9.1899593238378 9.32900385043756 9.4186381107225 9.48099087841922 9.0836128033685 9.28441120144761 9.0437454349297 9.30632743100968 9.29202440774038 9.2231460880093 9.43173348540365 9.35683124288323 9.17371407381754 9.34131622279833 9.01336112047044 9.2768932646076 9.22741228435094 0.123000144173997 0.11163336647372 0.116910456852306 0.117439526026140 0.11163336647372 0.116580123870182 0.11163336647372 0.113817429857653 0.124917537042492 0.116744309131103 0.11163336647372 0.115514308340842 0.113400771303977 0.113849357010611 0.121162757433514 0.11163336647372 0.121240718441510 0.118206409864216 0.114095979363844 3 3|0 +|/ 23148543 23149759 23149444.8 23148425 23150021 + gene protein_coding_gene FALSE TRUE AT3G62560.1 GTP-binding protein, putative similar to ASAR1 (Arabidopsis thaliana secretion-associated RAS super family 2), GTP binding [Arabidopsis thaliana] (TAIR:AT4G02080.1); similar to GTP-binding protein SAR1A (GB:O04266); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.147515266684204 1.91491729616501 0.0900939219683817 1 2.34831000323727 18.4707602623864 0.147515266684204 0.0533622565109481
AT1G30440_at 5.57796445796343 5.45354491733596 4.69649721447618 5.05619617614353 5.75899019155071 5.55642613987347 5.55698413155855 5.75664557461263 6.3368432448862 6.09118733665108 7.43772239060882 7.18609761942872 7.10477535827371 7.08341356563247 7.12636372513387 6.56587856821112 6.21085928495597 6.71983366376429 6.3882971163894 0.199263188495268 0.188952036844048 0.194316359128396 0.199098674558976 0.186552254701481 0.194884716652569 0.185479575835148 0.188405111456541 0.204246267282903 0.185479575835148 0.185479575835148 0.186193692032734 0.185479575835148 0.190298950762793 0.190348940701787 0.185479575835148 0.198784017100124 0.191819622041903 0.185479575835148 1 1 + 10761592 10762152 10761831 10759457 10762376 + gene protein_coding_gene FALSE TRUE AT1G30440.1 phototropic-responsive NPH3 family protein similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT5G03250.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97835.1); similar to NPH3 family protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85278.1); similar to transposon protein, putative, Mutator sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97836.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.169000724751113 1.91378837741731 0.0902533948692847 1 2.34677232568842 12.0273947277610 0.169000724751113 0.0822256359220857
AT1G09060_at 7.58236359797607 7.74908001709634 7.29532704516938 7.24723041001322 8.16008422298356 7.76162535628773 7.40318616176216 7.67079006129506 8.09562077812176 7.35442597637053 7.41671187075832 7.26594701029183 7.37323734556803 7.53171355960089 7.04434721804044 7.25309826787085 6.65627659487951 7.724723539316 7.48921073710572 0.173301603791386 0.180481172190741 0.195586471203692 0.195463112391122 0.174702145315231 0.18456332241903 0.186256479275681 0.169755884757361 0.177431311029519 0.176409600726342 0.168987599099232 0.172222197399239 0.172240148972072 0.182799842997916 0.186310293473024 0.169971323897996 0.187538385856886 0.173121111349819 0.176745400267824 1 1|0 -|/ 2921472 2922322 2921939 2921067 2925765 - gene protein_coding_gene FALSE TRUE AT1G09060.1|AT1G09060.2|AT1G09060.3 transcription factor jumonji (jmjC) domain-containing protein|transcription factor similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00990.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC [Medicago truncatula] (GB:ABE86658.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95907.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to transcription factor jumonji (jmjC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00990.1); similar to Zinc finger, RING-type; Transcription factor jumonji, jmjC [Medicago truncatula] (GB:ABE86658.1); similar to jmjC domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95907.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.174225219497102 -1.91312946432746 0.0903465981709537 1 2.34587497588632 15.0735489039013 -0.174225219497102 0.0883238464554408
AT3G51670_at 8.68702094239245 8.91687589051953 8.61055895025907 8.94000259572626 8.9793678548363 8.52574532626718 8.0063823515988 8.08890850538487 8.5041998167655 8.20014113255832 8.56839354983933 9.09999499240862 8.70118300243514 8.29782268577778 8.71525041079648 8.48934006385003 7.58817288622541 8.15430553666777 8.52647025894808 0.155807617766903 0.161551639507828 0.166882716169614 0.164353430632940 0.160317622166060 0.165103849352519 0.165291510813962 0.166363030615362 0.174499736797257 0.158758997453699 0.156759817558783 0.159504368637812 0.156524856849202 0.160174164829392 0.163830363246032 0.156641969769146 0.17712839538618 0.164769397609563 0.164930348494113 3 3 + 19180526 19181793 19181445.182 19179829 19182129 + gene protein_coding_gene FALSE TRUE AT3G51670.1 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein Identical to Patellin-6 (PATL6) [Arabidopsis Thaliana] (GB:Q9SCU1;GB:Q9XFS6); similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G72160.1); similar to hypothetical protein [Cicer arietinum] (GB:CAB95829.1); similar to Os05g0345100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055255.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.190329623770528 1.91176299330018 0.0905401776976904 1 2.34401436400896 17.0253969490017 0.190329623770528 0.105825491890640
AT2G27680_at 10.2895396662349 10.2694526573969 10.0586518920998 9.96600510409151 10.2495919814852 10.1180283113828 10.6410946037256 10.7706051927134 10.6599962851597 10.8530586069006 10.7299896124640 10.7915301843176 10.6088350669378 10.7978213879489 11.1656486584610 10.9938871482734 10.5939957044361 10.9558602971042 10.6181661062259 0.0901095557324056 0.086131252391467 0.0915479259920175 0.0860751239418667 0.085663681068709 0.083573674315114 0.0823806846115771 0.0877314023906456 0.0909584475125126 0.0878828723321265 0.0833869515539205 0.0851125425421957 0.0888214941518481 0.087117666728406 0.0858385753327061 0.083722511655797 0.085678371395508 0.0850293896518502 0.085093189037252 2 2|0 -|/ 11811195 11811976 11811650.4 11810888 11813090 - gene protein_coding_gene FALSE TRUE AT2G27680.1 aldo/keto reductase family protein similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G06690.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46252.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.137657349844369 -1.91033676478229 0.0907426437061859 1 2.34207286890079 21.0654226796021 -0.137657349844369 0.0359141203963293
AT1G09330_at 8.48662670127096 8.76526054883941 8.68769299914531 8.77639925241678 8.95432018474609 8.5137009144393 8.82417090315506 8.36207437015131 7.79114352689118 7.66081140857236 7.89859528022964 8.15225586699448 7.8403976882392 7.53161716399857 8.1165518200119 7.64762022695664 7.9553488563827 8.03137371481476 7.37365433834722 0.183532580633483 0.184011017084747 0.188141009729392 0.17693308408984 0.179701223010849 0.181099777065420 0.186463791667879 0.175542801952367 0.187434901647151 0.176701957837281 0.189849051618957 0.185802188527381 0.177554413462968 0.188352737700759 0.190119788267283 0.178931497662255 0.186941394336563 0.182336814993816 0.182854794055893 1 0|1 /|- 3013013 3014347 3013572.875 3012764 3015093 - gene protein_coding_gene FALSE TRUE AT1G09330.1 Identical to FAM18-like protein At1g09330 [Arabidopsis Thaliana] (GB:Q8LEK2;GB:Q9ZPZ2); similar to Os01g0331900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042930.1); similar to Os05g0159100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054714.1); similar to FAM18-like protein CG5021 (GB:Q8IQC1); contains InterPro domain Protein of unknown function DUF846, eukaryotic; (InterPro:IPR008564) 0.205839429716292 1.91017062655599 0.0907662565253761 1 2.34184674058315 16.4239089851741 0.205839429716292 0.121531223771536
AT3G13720_at 8.44223857689658 8.70804828105147 7.75295612583975 8.3234147535398 8.42000324368935 8.72562237408282 8.02262326565747 8.45297678304646 8.47376562134906 7.70200400331994 8.9916008408527 8.79740173568837 8.97858764254302 8.89460282471186 8.42284406208802 8.71480598768695 8.19467445872692 8.26859743982457 8.129765420302 0.131122691697683 0.128877591938854 0.132432071889949 0.137475889235439 0.133057877256765 0.136400213112371 0.135960296125508 0.147202189455285 0.157228860213377 0.154273635601307 0.128219212137201 0.126885646330389 0.142048971439027 0.136999873909256 0.133362975693834 0.126885646330389 0.141087405658979 0.134526266286477 0.139189050474803 3 3 - 4495219 4495710 4495501.273 4495026 4495963 - gene protein_coding_gene FALSE TRUE AT3G13720.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT3G13710.1); similar to prenylated rab acceptor family protein [Thlaspi caerulescens] (GB:AAY18432.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.227535878324952 1.90938803017023 0.0908775636921133 1 2.34078165049936 16.7358526199783 0.227535878324952 0.142145740631687
AT1G29750_at 5.37439319827001 4.73729802905288 4.90554111927481 4.9095212854274 4.92926812754499 4.84262459313512 4.71843602970424 4.44064900394129 4.9344597386498 4.76780990130747 4.99589229890963 5.46225359935196 5.10494270774918 5.22287509782036 5.51474689685207 5.32066789210457 5.42144708045894 4.80987229712488 4.99854978828782 0.189802678567982 0.192356138312853 0.197766698786138 0.192758307490750 0.191006551143186 0.192114118706251 0.208588636172220 0.187355853021060 0.200318434120779 0.196584839772011 0.186343379788333 0.198835279194061 0.187969091209136 0.193640753688946 0.200983215956458 0.186343379788333 0.200865189289601 0.197933572524564 0.197305785802496 1 1 - 10414241 10414643 10414450.5 10413866 10420509 - gene protein_coding_gene FALSE TRUE AT1G29750.1|AT1G29750.2 RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / kinase/ protein serine/threonine kinase|RKF1 (RECEPTOR-LIKE KINASE IN FLOWERS 1); ATP binding / protein serine/threonine kinase Receptor-like serine/threonine kinase (RKF1). The putative extracellular domain of the RKF1 protein contains 13 tandem repeats of leucine-rich sequences. Expressed in early flower primordial, stamen, and pollen grains. similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14840.2); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G07650.1); similar to serine/threonine protein kinase-related [Arabidopsis thaliana] (TAIR:AT1G53420.1); similar to putative receptor-like protein kinase 2 [Glycine max] (GB:AAU10526.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72026.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.205179403575781 1.90709935938667 0.0912038226097073 1 2.33766769650556 9.92314661156624 0.205179403575781 0.121209793013005
AT4G03240_at 5.60817221726931 6.2545406282833 5.36441549572532 5.38407180003461 5.91938450531786 5.80328066592881 5.77710299650482 6.25345686797565 5.10537515777075 5.29131780498213 5.28497511974517 5.46079446797063 5.23682774389302 5.16047287146051 5.03788339232783 5.2717016207455 5.12389078236455 5.04375406879307 5.49636490442817 0.210015622004008 0.194812452862192 0.201052967876054 0.201624220672409 0.199160841492443 0.194812452862192 0.204034117387490 0.197044269498395 0.211987885760247 0.210969459130729 0.198714589105885 0.197997031389179 0.197403149429424 0.206524553300449 0.206708550442064 0.199741951412748 0.202176379301772 0.194812452862192 0.202971717640155 4 4|0 -|/ 1423687 1424393 1423988.375 1423445 1424772 - gene protein_coding_gene FALSE TRUE AT4G03240.1 ATFH/FH (FRATAXIN HOMOLOG) Identical to Frataxin homolog (FH) [Arabidopsis Thaliana] (GB:Q9ZR07;GB:Q6GKV0); similar to putative frataxin [Oryza sativa (japonica cultivar-group)] (GB:BAD53291.1); contains InterPro domain Frataxin-like; (InterPro:IPR002908) -0.225339254035553 -1.90644390690657 0.0912974649578615 1 2.33677612720376 11.0456648791997 -0.225339254035553 0.140438055949267
AT1G73100_at 5.49121542176789 5.33085189360648 5.24156933810385 5.53834231087976 5.73572605859354 5.346880362182 4.92031268791282 5.2217433956201 4.7185184582229 4.92474342262961 4.77787520657055 5.24486467165345 5.34228444012159 5.0343913467875 4.71240218695721 5.42118794807283 4.94595131424476 4.7551559326422 4.99510103246687 0.236366417786522 0.225292775675886 0.233430865555834 0.225567480370874 0.229970214802028 0.236548807414072 0.228125908963825 0.244544539839993 0.255598876222902 0.230112963848486 0.221704621033799 0.221704621033799 0.227561608857477 0.229947649345892 0.222124895760739 0.222002469408344 0.239899610511037 0.236537073095564 0.221704621033799 1 1 + 27497041 27497606 27497321.455 27494845 27497843 + gene protein_coding_gene FALSE TRUE AT1G73100.1 SUVH3 (SU(VAR)3-9 HOMOLOG 3) Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and this subfamily of the SET proteins have an additional conserved RING finger motif called YDG domain. Identical to Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 3) (H3-K9-HMTase 3) (Suppressor of variegation 3-9 homolog protein 3) (Su(var)3-9 homolog protein 3) (Protein SET DOMAIN GROUP 19) (SUVH3) [Arabidopsis Thaliana] (GB:Q9C5P4;GB:Q9SSL7); similar to SUVH1 (SU(VAR)3-9 HOMOLOG 1) [Arabidopsis thaliana] (TAIR:AT5G04940.2); similar to SET-domain-containing protein [Nicotiana tabacum] (GB:CAC67503.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain SET-related region; (InterPro:IPR003616); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) 0.187204247077214 1.90534356827351 0.091454872374114 1 2.33527964515504 10.3076894012438 0.187204247077214 0.103232888205265
AT3G07780_at 8.10018911354183 8.01360512434262 8.29295561486463 8.03262181252606 8.45867741780984 7.9377397590568 6.97800700194861 6.88710884147862 7.56110829019754 7.31106144921888 7.30052295892033 7.3714639793948 7.34271092683788 7.12340351013657 7.09033645692965 7.31311070178819 7.25404846211402 7.03216625182324 7.74931019869552 0.176450811733833 0.193786443693463 0.184413803105821 0.183886212837725 0.189494569050612 0.18476850406656 0.179833041375220 0.18938096762852 0.180057925048874 0.176479357959761 0.175213111221587 0.173837973796625 0.181325371677190 0.184121479235757 0.191541583908825 0.172453285046209 0.183338501765057 0.183643406787834 0.179601804355396 3 3 + 2486284 2486844 2486590.909 2484475 2487030 + gene protein_coding_gene FALSE TRUE AT3G07780.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G48160.2); similar to Os12g0514400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066881.1); similar to Potyvirus VPg interacting protein [Nicotiana benthamiana] (GB:AAP22954.1); similar to Potyvirus VPg interacting protein [Pisum sativum] (GB:AAP22955.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Arabidopsis thaliana 130.7kDa hypothetical protein; (InterPro:IPR004082) 0.186874112012759 1.90330995180722 0.0917464680336546 1 2.33251467027219 15.2220949450447 0.186874112012759 0.103095999087075
AT1G09730_at 6.96635714497873 7.2404208257686 6.8244456286339 6.68466282096958 7.13035358929304 7.04596141356331 6.70645881967115 7.01590364593367 6.84923694411555 6.43672321193644 6.6976649694455 6.71919728991856 6.42410789494109 6.56661656923732 6.04845726154284 6.73529401175051 6.34693935641953 6.35222627698458 6.97179014508968 0.208441776650061 0.204122630555879 0.215074814907038 0.19999537062436 0.210763753092078 0.203936649454561 0.201420930904974 0.201559153666299 0.207171920853827 0.207676845680183 0.198405401888413 0.200933216343611 0.196173512437067 0.213455197915906 0.200884562388426 0.204461670016083 0.218386351856977 0.207504481518929 0.213373239971467 1 1 - 3148050 3148681 3148329.091 3147669 3154238 - gene protein_coding_gene FALSE TRUE AT1G09730.1 Ulp1 protease family protein similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT4G33620.1); similar to hypothetical protein DDBDRAFT_0191980 [Dictyostelium discoideum AX4] (GB:XP_629102.1); similar to Os05g0207900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054903.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.163599862953488 -1.90239386502948 0.0918781122304936 1 2.33126946007847 13.5712686798484 -0.163599862953488 0.0769126796906588
AT4G35470_at 8.06821086474815 8.30798992782091 7.98539954932238 8.23206913164864 9.18653674804717 8.7702687023057 8.58784292109755 8.37791694178989 8.40198944134726 7.96897772844688 8.78104435270752 8.42777432494893 8.82822674826784 8.63788160811181 8.16078654413907 8.4290489629928 8.2164769941895 8.29296868243673 8.56397396668177 0.142741636957136 0.138637170673859 0.148379224298412 0.145583217015433 0.138377593814734 0.137311716635191 0.136488057338482 0.135054972408846 0.170366460005574 0.135895313701699 0.136925017653475 0.138954970957501 0.140840376543106 0.140882732058313 0.144738195016408 0.135086722516146 0.157500150389363 0.144782084489081 0.139250819230047 4 4|0 +|/ 16847902 16848396 16848105.4 16846306 16849155 + gene protein_coding_gene FALSE TRUE AT4G35470.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G17440.1); similar to PSR9 [Brassica nigra] (GB:AAM10777.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) 0.184103675349574 1.90233663819654 0.0918863418404934 1 2.33119168017795 16.8312408847057 0.184103675349574 0.100265411757057
AT4G33090_at 10.2787311260493 10.3927806785109 10.4595383817008 10.4377543369238 10.6133384371397 10.3816286976764 10.3309437517837 10.1245134090206 9.67586722067389 9.847832821445 10.0462557368775 9.89275993054522 9.68052245922978 9.98751530219557 9.68946465077529 9.9693315405648 9.80301298258772 9.80117416669492 9.73204700217948 0.161727537417900 0.158805590870562 0.164192523526245 0.16025768540724 0.160206946648288 0.169654448368136 0.160454967849703 0.160963857672804 0.174714237242721 0.165470753710721 0.154611803531649 0.160118822139793 0.164023959823045 0.167417706269287 0.169374729880161 0.154611803531649 0.18088965039149 0.182014289466277 0.167329557981185 4 0|4 /|- 15965936 15966663 15966326.857 15965744 15970459 - gene protein_coding_gene FALSE TRUE AT4G33090.1 APM1 (Aberrant peroxisome morphology 1) encodes a Arabidopsis aminopeptidase, a ortholog of mouse microsomal AP (EC 3.4.11.2). similar to peptidase M1 family protein [Arabidopsis thaliana] (TAIR:AT5G13520.1); similar to putative puromycin-sensitive aminopeptidase [Oryza sativa (japonica cultivar-group)] (GB:BAD23406.1); similar to putative puromycin-sensitive aminopeptidase (PSA) [Oryza sativa (japonica cultivar-group)] (GB:BAC99372.1); similar to Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE80472.1); contains InterPro domain Peptidase M1, membrane alanine aminopeptidase; (InterPro:IPR001930) 0.149080818385068 1.90193060463179 0.0919447523705808 1 2.33063984253301 20.1827387411589 0.149080818385068 0.0573395508269075
AT2G34590_at 8.38759368219123 8.45304099969633 7.34941967676934 7.15882780663757 7.72728910554248 7.92327676053575 8.20547106424486 8.75040841602797 8.2269087647494 8.25969257157673 9.30865159234265 9.25325072878607 8.81734952582195 8.9107000720417 9.40657912212966 8.50802032382088 8.16105723864611 8.25816480993716 8.4066849185285 0.168329091044529 0.156625962652014 0.174634258242054 0.168597137619175 0.159314221246766 0.174104992082235 0.156625962652014 0.159826590401407 0.170086048805952 0.157264438823093 0.156625962652014 0.160126074817919 0.161206097450240 0.163878911451374 0.161836444477555 0.163210409227431 0.180047441108472 0.168604178542885 0.158070455629495 2 2 - 14576038 14576653 14576360.364 14575890 14578048 - gene protein_coding_gene FALSE TRUE AT2G34590.1 transketolase family protein similar to PDH-E1 BETA (PYRUVATE DEHYDROGENASE E1 BETA), pyruvate dehydrogenase (acetyl-transferring) [Arabidopsis thaliana] (TAIR:AT1G30120.1); similar to Os12g0616900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067285.1); similar to Pyruvate dehydrogenase E1 component beta subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97865.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475) -0.189607805714791 -1.90174250648175 0.0919718234556695 1 2.33038421333798 16.5572828197769 -0.189607805714791 0.106111792979512
AT3G03720_at 7.23971070187036 7.55370614141516 7.4402462500896 7.86418290889988 7.97290736541278 7.26383057341295 7.42021963783723 7.31574458334913 7.12215880597349 6.7088069920817 7.13409757476219 6.75551863511776 7.08801608035483 7.52290895356711 6.87672470715924 7.35572897275117 7.10447633009743 7.07557954272877 6.83381908325598 0.195415972879906 0.188242683105506 0.196408892808722 0.194100555274296 0.196602600112171 0.203349828609954 0.197797380140474 0.1942369075852 0.196021750373190 0.188551384244209 0.182669060231538 0.182669060231538 0.193146545388742 0.198955638575737 0.188662171048769 0.182669060231538 0.205009788718394 0.191320208439988 0.197566644120010 3 3 - 925916 927201 926635.7 925619 929947 - gene protein_coding_gene FALSE TRUE AT3G03720.1 CAT4 (CATIONIC AMINO ACID TRANSPORTER 4); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At3g03720) similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to CAT2 (CATIONIC AMINO ACID TRANSPORTER 2), amino acid transporter [Arabidopsis thaliana] (TAIR:AT1G58030.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABD28534.1); similar to Amino acid permease-associated re (GB:ABE92408.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99422.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.239408115399716 1.90017148158530 0.092198221411123 1 2.32824950060859 14.5100150086214 0.239408115399716 0.154010907927275
AT1G07350_at 6.4790442648608 5.97193102763298 6.50473224701398 6.39456278757679 6.5938592366594 6.63538649984588 6.98317105828017 6.88548826478697 6.86708582782446 7.23351872422668 6.68822501787581 6.38773874539205 6.8741784140597 6.7772536915906 6.65155202634529 7.13198729821593 7.27926734363543 7.3320925923341 7.48291864276125 0.159226463342677 0.159980575632126 0.164036983391925 0.163159112288213 0.151396325871235 0.158943863926993 0.161074897354831 0.159871951726078 0.171433257138734 0.151396325871235 0.162835240520239 0.161984907605301 0.157078050644751 0.162891295708845 0.151431874843823 0.155471997875803 0.170284469075781 0.154579237411899 0.158354503589341 1 1 - 2257781 2258381 2258122.909 2257423 2260099 - gene protein_coding_gene FALSE TRUE AT1G07350.1|AT1G07350.2 transformer serine/arginine-rich ribonucleoprotein, putative similar to transformer serine/arginine-rich ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT4G35785.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95136.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to transformer serine/arginine-rich ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT4G35785.1); similar to Os03g0265600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049650.1); similar to RNA recognition motif family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95136.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.175997150769617 -1.90006124716161 0.0922141269924202 1 2.32809973674097 13.5984192347247 -0.175997150769617 0.0916646862851328
AT4G08320_at 6.23819592392388 6.54978471169674 5.97060964590264 6.1964843656988 6.70029965187536 6.39836298427643 6.19932378773816 5.51848707757527 5.6514889306442 4.94779688445471 5.67228232294006 5.70909591712198 5.03267346534581 5.88641484502732 5.7109829641635 5.99144055797367 6.07618009693087 5.69716599539459 5.76030533404324 0.230993455073294 0.234963199545331 0.240994070354845 0.239266489721810 0.228906143834142 0.237304213163211 0.230616222052647 0.238372048203032 0.239878804919075 0.231353347965275 0.227329530790516 0.225543179458594 0.229694750416449 0.230481068145463 0.230167963345388 0.224491836780463 0.229160451669041 0.233931494148538 0.232220221208694 4 4|0 +|/ 5254119 5254910 5254618.556 5252808 5255197 + gene protein_coding_gene FALSE TRUE AT4G08320.1|AT4G08320.2 tetratricopeptide repeat (TPR)-containing protein|binding similar to PAPP5/PP5 (PROTEIN PHOSPHATASE 5), phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G42810.1); similar to H0814G11.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86350.1); similar to OSJNBa0039K24.25 [Oryza sativa (japonica cultivar-group)] (GB:CAE01806.2); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.229411878801485 1.89850297789031 0.0924392467677146 1 2.32598300352499 11.8090568037490 0.229411878801485 0.145078376777575
AT3G28480_at 8.57995443539944 8.6628080037996 8.68939098928483 8.72940715139518 7.78236081765534 7.69793232783902 7.33897230701028 7.14430859603695 6.40422157366626 6.42727657546639 5.94494162175134 6.85281137587054 5.97873839889768 6.25829698437136 5.95461226489546 6.04244218197631 6.68934626314735 6.5042759467433 6.05047396842389 0.240300758162416 0.236151235097990 0.236545437331351 0.240211422065143 0.234133667951787 0.240133714874941 0.237811272157339 0.238513930098118 0.242928173462060 0.234133667951787 0.234133667951787 0.234133667951787 0.234133667951787 0.237754473769144 0.236836724174530 0.234133667951787 0.234133667951787 0.234133667951787 0.235207893012687 3 3|0 -|/ 10677503 10678434 10678002.6 10677270 10679625 - gene protein_coding_gene FALSE TRUE AT3G28480.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT3G28490.1); similar to Metridin-like ShK toxin; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABE78638.1); contains InterPro domain Prolyl 4-hydroxylase, alpha subunit; (InterPro:IPR006620); contains InterPro domain Metridin-like ShK toxin; (InterPro:IPR003582); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.138727204918258 1.89821350469603 0.0924811238026995 1 2.32558985326113 14.364228746332 0.138727204918258 0.0400232217368099
AT4G35870_at 5.27663873920753 5.6903290718728 5.82842490461239 5.26605094992809 5.96787764536026 5.97562581516764 5.5682186710394 5.62860266185894 5.3185688716634 4.85779686783604 5.02864056664662 4.97351668804122 5.11121956741518 5.25879200144954 5.15256619075391 5.11280277180828 5.18906695287354 5.25663893464907 4.66211568322729 0.232905062675517 0.225637018586505 0.220901440795267 0.244265729526694 0.226125250915916 0.223847336413677 0.229523934006606 0.232608395800814 0.229015831702755 0.220611432441321 0.221887428939712 0.219473201355466 0.231370553034004 0.227318330068361 0.222555063041574 0.218014753015972 0.229055629232825 0.226884979799128 0.221998895882712 4 4 + 16992192 16992731 16992458.273 16990176 16992891 + gene protein_coding_gene FALSE TRUE AT4G35870.1 similar to early-responsive to dehydration protein-related / ERD protein-related [Arabidopsis thaliana] (TAIR:AT3G21620.1); similar to Os03g0137400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048901.1); similar to unknown [Sorghum bicolor] (GB:ABE77195.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.203896263867428 1.89455248466829 0.0930123079335342 1 2.32061941321711 10.6910040241043 0.203896263867428 0.121275446131443
AT1G55460_at 6.53752185520844 6.85194153482973 6.85709713502539 6.73482720572932 7.26339992970923 6.93543841552275 6.90304499548082 6.94761906527475 7.08891307180724 7.53001084551379 7.67523508688239 7.70319946594739 7.53316583890905 7.75401037267113 7.17410978514772 7.62398737059579 7.54599032242404 7.17759395466163 7.36279884734774 0.189425546173886 0.196782290102714 0.193829805514119 0.187848429206494 0.192702255888378 0.199649387768005 0.198318787254049 0.190173906187745 0.202397949556774 0.194517627513073 0.200216089867338 0.191834095918506 0.198690645912848 0.190094089902946 0.192244346532893 0.190618016762043 0.18917438830389 0.203165979779923 0.195563969610888 1 1 + 20711882 20712441 20712124.5 20711144 20712690 + gene protein_coding_gene FALSE TRUE AT1G55460.1 Kin17 DNA-binding protein-related similar to Kin17 DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT5G51795.1); similar to Os03g0570300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050519.1); similar to hypothetical protein [Oryza sativa] (GB:AAG59654.1); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) 0.166914705948437 1.89433709363385 0.0930436494990146 1 2.32032708859857 14.3041874902031 0.166914705948437 0.0817864603936636
AT3G46590_at 8.50762390688109 8.64887694198842 8.92568216326553 8.75438679580681 9.18704183661846 8.5424676308684 9.28629193129224 8.90969005555267 9.29330032631765 9.31367354062277 8.65547362081139 8.67244328430975 9.09415782379568 8.99934851754791 8.1151893144478 9.20947013103645 8.94267811406783 8.71439002871561 9.143998370338 0.119206312365750 0.116710994761345 0.117369544426486 0.11866195718361 0.116393245058929 0.120020134665192 0.126498951796467 0.117181833704367 0.123712973034828 0.116762015846003 0.119638692421643 0.117045983373162 0.118869226018204 0.122465301511153 0.114209823641023 0.113334323103687 0.124850207422971 0.121591299915391 0.114095579143826 3 3 + 17166133 17166904 17166613.636 17163760 17167212 + gene protein_coding_gene FALSE TRUE AT3G46590.1|AT3G46590.2|AT3G46590.3 TRFL1 (TRF-LIKE 1); DNA binding Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers. similar to ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G59430.4); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G59430.2); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to ATTRP1 (TELOMERE REPEAT BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G59430.2); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.217828163520029 -1.89382120691947 0.0931187569923256 1 2.31962698421389 17.8706166245014 -0.217828163520029 0.134782745009101
AT1G29040_at 6.92575310875996 7.0155027957813 6.63433678498536 6.41792679417955 7.23508851066893 6.50303618797243 6.34347611343222 6.24775477303943 6.08657309283599 5.64635514329614 6.18987210375733 6.63262825165415 5.67724370614418 6.7773194018042 6.19633040400511 6.10532108757915 5.64250737261793 5.89175943136667 5.57668803316959 0.23714849083565 0.246862373569252 0.249485470427283 0.239577076359825 0.240431645640488 0.244281717309565 0.245767247327986 0.241960273825699 0.250426005486688 0.242672881746715 0.236625252804125 0.237347780580065 0.236496546970604 0.242930146584886 0.244518214295362 0.239149600713501 0.244366860182621 0.237539482063213 0.239451545779865 1 1|0 +|/ 10134106 10135139 10134320.714 10134055 10136110 + gene protein_coding_gene FALSE TRUE AT1G29040.1|AT1G29040.2|AT1G29040.3 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1); contains InterPro domain Conserved hypothetical protein 2058; (InterPro:IPR011719)|similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61226.1); similar to Os01g0613300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043561.1) 0.216863000898598 1.89222272089081 0.0933518448641616 1 2.31745811976521 12.6198567884191 0.216863000898598 0.134042144812981
AT3G28730_at 7.91593545130206 7.88933062004986 7.87354874936723 7.7610408653173 8.22650306902648 8.06309185696793 7.89231731295647 7.81036714012692 7.94064692703028 7.8393153099111 7.55277516261199 7.3197710562895 7.50121267341867 7.62097678622027 7.43942830551866 7.59643967549726 7.89173252196882 7.80212995956383 8.12591410209844 0.135980847818706 0.130950877243083 0.137407266954536 0.130461953414494 0.139366609514319 0.133864877094103 0.134946396311328 0.138401746637802 0.140502927964802 0.135202419501746 0.131034897251658 0.132565409639616 0.141334260597148 0.146527134918601 0.145583662432642 0.135166170245852 0.135931279519577 0.138592126060763 0.133384453835711 3 3|0 +|/ 10788725 10789677 10789114 10786126 10789966 + gene protein_coding_gene FALSE TRUE AT3G28730.1 ATHMG (HIGH MOBILITY GROUP, STRUCTURE-SPECIFIC RECOGNITION PROTEIN 1); transcription factor encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1 Identical to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (SSRP1) [Arabidopsis Thaliana] (GB:Q05153;GB:Q9LHA2); similar to HMGB1 (HIGH MOBILITY GROUP B 1) [Arabidopsis thaliana] (TAIR:AT3G51880.3); similar to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (GB:O04235); similar to FACT complex subunit SSRP1 (Facilitates chromatin transcription complex subunit SSRP1) (Recombination signal sequence recognition protein 1) (GB:Q39601); similar to early drought induced protein [Oryza sativa (indica cultivar-group)] (GB:AAM46895.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain Structure-specific recognition protein; (InterPro:IPR000969); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.137004337324789 -1.89164546438748 0.0934361552448298 1 2.31667504200193 15.7086087401307 -0.137004337324789 0.0374314061830492
AT3G56910_at 10.8287475654260 10.9831915415954 10.5665610761133 10.3930360317028 11.0134833330906 10.7935295420896 11.2483289890401 11.2089891499424 11.8515270131657 11.6868318504778 11.8629487592313 12.1640604981947 11.6520941555081 11.7246622261196 12.0616650273646 11.8498652820523 11.2791966730790 11.7661630924302 11.6033973069055 0.0720931654444036 0.0731859075664706 0.075366411102139 0.0900540981435555 0.073944109236689 0.0790282929569316 0.0770497445707378 0.0727325329873369 0.080208355785121 0.0720931654444036 0.0752935985789449 0.0733380330963786 0.0720931654444036 0.0756385545250614 0.0737032784202093 0.073570595776335 0.084674782880518 0.075054871492946 0.0720931654444036 3 0|3 /|- 21080563 21080853 21080721.4 21080390 21081335 - gene protein_coding_gene FALSE TRUE AT3G56910.1 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) Identical to Plastid-specific 50S ribosomal protein 5, chloroplast precursor (PSRP- 5) (PSRP5) [Arabidopsis Thaliana] (GB:Q9LER7;GB:Q94B31); similar to Os01g0278900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042743.1); similar to 50s ribosomal protein l18, chloroplast precursor (cl18). [Medicago truncatula] (GB:ABE79862.1) -0.147249287510394 -1.89154789574934 0.093450412633163 1 2.31654269347269 22.6339837475069 -0.147249287510394 0.0557792459532472
AT1G12270_at 7.27059626208392 7.51051952234189 6.99535911856514 7.26401079103919 7.60142962816973 7.03856007382467 7.29542660319195 7.28761447008875 6.69574973107722 6.79829545455127 6.36864736057872 6.7053174795657 6.35063024261667 6.41821879575397 6.84800087111619 6.84055563385257 6.39770838545842 6.53035970291663 7.01698479375741 0.189536447083895 0.176500737105517 0.189281632783700 0.176500737105517 0.181546406810493 0.207645172102956 0.179311776601532 0.185763260242642 0.184975896087731 0.184996820644818 0.194259766226823 0.185078157396198 0.185739148480402 0.185639680532396 0.177979074299007 0.180591928152622 0.180702991592300 0.188263595802634 0.183020503894255 1 1 + 4173564 4174539 4173999.455 4172073 4174773 + gene protein_coding_gene FALSE TRUE AT1G12270.1 stress-inducible protein, putative similar to binding [Arabidopsis thaliana] (TAIR:AT4G12400.2); similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047563.1); similar to Os04g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053429.1); similar to Heat shock protein STI (Stress-inducible protein) (GmSTI) (GB:Q43468); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) -0.197889747836607 -1.89127608062554 0.0934901429858013 1 2.31617399816864 13.9801594597187 -0.197889747836607 0.115651806020333
AT1G55590_at 6.84269920330627 6.14187377587608 6.68602189934681 6.57368297035171 7.19128742847523 6.95335615740035 6.40167321154483 5.68780939015129 5.97999568308063 5.58454476859150 5.7952280477136 5.87711934973146 5.80318134110043 5.77328748594892 5.29550280699141 5.95058673259509 6.1975155101932 5.92177734130982 6.06519487044409 0.247943697216817 0.243592142920926 0.248594593974244 0.255440481020806 0.245343903210418 0.248987028954717 0.242840819937464 0.250859294497311 0.24340317751882 0.247692813634749 0.265250827589694 0.247400040437112 0.24834500912698 0.254460126963754 0.252091049851596 0.247595112490376 0.245986642410137 0.250053263277173 0.252950886838614 1 1 - 20773194 20773659 20773421.455 20772986 20775537 - gene protein_coding_gene FALSE TRUE AT1G55590.1 F-box family protein similar to F-box family protein (FBL10) [Arabidopsis thaliana] (TAIR:AT2G17020.1); similar to hypothetical protein [Capsella rubella] (GB:CAC36388.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.266384802458244 1.89126924617132 0.0934911421628595 1 2.31616472802221 12.4114771383833 0.266384802458244 0.179008229409797
AT4G36515_at 7.97985617184323 7.79612520286694 8.23085573290092 7.82141964614017 8.96234839834058 8.29155417943723 8.0340726536341 7.7161543168293 8.2452553098214 7.96722035254375 7.18463735587473 7.51141045752112 6.83887122852825 7.68458667908174 6.43464382999314 8.032422147006 6.93843015479128 6.7319488499405 8.03501659902154 0.320990416267221 0.282398010687159 0.326371342027737 0.310595064550211 0.282398010687159 0.342225025364465 0.3101749786693 0.282398010687159 0.318729899525754 0.282398010687159 0.33364308459002 0.300307903370801 0.282398010687159 0.287556967945255 0.319241123815142 0.282398010687159 0.282398010687159 0.282398010687159 0.282398010687159 4 4 - 17229893 17230102 17229974.333 17229557 17230299 - gene protein_coding_gene FALSE TRUE AT4G36515.1 contains domain AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED (PTHR23172); contains domain gb def: Trichohyalin like protein (PTHR23172:SF16) -0.2339430898544 -1.89072511200539 0.093570725510335 1 2.31542671074512 15.7301064169012 -0.2339430898544 0.150112520363014
AT1G17580_at 7.12181571681526 7.46507742872557 6.9119819552144 7.25987090460884 7.47814036518028 7.56477465659387 7.30748038172197 6.89679676167585 7.22205934646037 7.45539152065746 7.1084390829068 6.85969048104824 6.9841230153594 6.68323633117678 6.60812436628382 7.05371616753578 7.11483802584234 6.9769828717519 7.57317920637982 0.200357828398553 0.188246070129575 0.181608376364955 0.18716080928628 0.180987070470078 0.203768668995929 0.180774661570574 0.184613019638586 0.207462604180458 0.194409644015873 0.187530471650337 0.179438367930437 0.194167163980322 0.191615249938252 0.199568499337723 0.185127558087146 0.197523128145064 0.184722426336194 0.191955980856830 1 0|1 /|+ 6049002 6049262 6049159.167 6039296 6049549 + gene protein_coding_gene FALSE TRUE AT1G17580.1 MYA1 (ARABIDOPSIS MYOSIN); motor/ protein binding Type VIII myosin gene similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to unconventional myosin heavy chain [Zea mays] (GB:AAD17931.2); similar to unconventional myosin [Helianthus annuus] (GB:AAB71529.1); similar to myosin XI [Nicotiana tabacum] (GB:BAD72949.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain Myosin S1 fragment, N-terminal; (InterPro:IPR008989); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.193666750131533 -1.89022892364577 0.0936433525015792 1 2.31475378814340 14.421002513269 -0.193666750131533 0.111485604828756
AT1G01160_at 6.8932094800854 6.81060052570917 7.11832784903362 7.2531253925498 7.7232782870237 7.23856023599684 7.39129680692529 7.20722283450052 6.76107488962507 6.45734488627126 6.19474741058067 5.75081210749729 6.43480129563849 6.17581422587488 5.90030183020877 6.18781235828473 6.28974541654336 5.82758041229401 6.90214739984071 0.170605130584482 0.170442487214956 0.182111425503276 0.173550544509951 0.175482751509307 0.181647435053321 0.185250984961356 0.171910365039317 0.178724329313714 0.172388548803540 0.170856740692946 0.177752991276604 0.180407705322588 0.182963917386313 0.188893340406902 0.169385963912711 0.188280105528405 0.185926710022247 0.178099155891515 1 1|0 +|/ 72606 73597 73336.7 72339 74096 + gene protein_coding_gene FALSE TRUE AT1G01160.1 GIF2 (GRF1-INTERACTING FACTOR 2) Arabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNA similar to GIF3 (GRF1-INTERACTING FACTOR 3) [Arabidopsis thaliana] (TAIR:AT4G00850.1); similar to Os12g0496900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066805.1); similar to Calcium-responsive transcription coactivator (ISS) [Ostreococcus tauri] (GB:CAL54353.1); similar to Os11g0615200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068275.1); contains InterPro domain SSXT; (InterPro:IPR007726) -0.176956656892254 -1.88970415695276 0.0937202207071161 1 2.31404217566172 13.6054814801585 -0.176956656892254 0.0938060732872679
AT4G35000_at 11.4229094545068 11.4849691076521 11.7530015017357 11.7845978917541 11.8292369053051 11.711405543397 11.8324181383688 11.9387443557287 11.5407419620135 11.5350819970315 11.5996910134157 11.5016851657154 11.7389909133846 11.6478965673459 11.5472599359834 11.6810701335370 11.8236080833059 11.7072948532113 11.3896379467714 0.0647946491314555 0.065007533363146 0.0690710615807286 0.068824191678285 0.0661987492022832 0.0667077012832777 0.0674188344537265 0.0647946491314555 0.0717177156355807 0.0710369086721355 0.065562006387602 0.0647946491314555 0.0679418372902998 0.0668721981086409 0.067614045294493 0.0647946491314555 0.0667899820785847 0.0671251706693146 0.0684771197578132 4 0|4 /|- 16665071 16666347 16665795.143 16664827 16667723 - gene protein_coding_gene FALSE TRUE AT4G35000.1 APX3 (ASCORBATE PEROXIDASE 3); L-ascorbate peroxidase Encodes a microsomal ascorbate peroxidase APX3. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. The APX3 protein interacts with AKR2 (ankyrin-containing protein that interacts with AFT1) and AFT1, a 14-3-3 protein. Identical to L-ascorbate peroxidase 3, peroxisomal precursor (EC 1.11.1.11) (AtAPx03) (APX3) [Arabidopsis Thaliana] (GB:Q42564;GB:O81810); similar to APX5, L-ascorbate peroxidase/ peroxidase [Arabidopsis thaliana] (TAIR:AT4G35970.1); similar to ascorbate peroxidase (GB:AAB52954.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) 0.133624988891235 1.88847833946588 0.0939000127093253 1 2.31238017085001 23.2918725548941 0.133624988891235 0.0299935369650898
ATCG00490_at 10.3827163421125 11.1279400277679 11.1097807368698 11.0746219526649 10.5888049850433 10.3843443472234 10.8215153457436 10.8028537187890 11.5465169381762 11.5925271417267 12.0561337121124 12.5805108852654 11.9498987157634 11.9230622076649 11.8256082960106 12.1512276820717 11.8972868247394 11.4594323190899 11.5220809588072 0.0797712913865188 0.0786641210084244 0.0766800728306154 0.0797155955025507 0.0790792031408954 0.0830603571080796 0.0779308119041805 0.0774468851459269 0.084793960691149 0.0766800728306154 0.0766800728306154 0.0766800728306154 0.0769827113999689 0.0819005776577069 0.0775517347064393 0.0776753921455878 0.0823802078350085 0.076818178307959 0.076997744289035 C C + 56053 56351 56200.545 54958 56397 + gene protein_coding_gene FALSE TRUE ATCG00490.1 large subunit of RUBISCO. Identical to Ribulose bisphosphate carboxylase large chain precursor (EC 4.1.1.39) (RuBisCO large subunit) (rbcL) [Arabidopsis Thaliana] (GB:O03042); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Tersonia cyathiflora] (GB:AAA34203.2); similar to Ribulose bisphosphate carboxylase large chain precursor (RuBisCO large subunit) (GB:P48686); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Gyrostemon tepperi] (GB:AAA33356.2); contains InterPro domain Ribulose bisphosphate carboxylase, large chain; (InterPro:IPR000685) 0.216159190475059 1.8873163441337 0.0940707459613232 1 2.31080504937844 22.553623895315 0.216159190475059 0.133907512788971
AT1G31800_at 9.23183038191571 9.27215551463926 9.3853004100324 9.27238479869856 9.60754599249582 8.80118610174022 10.2731803002597 9.8584399197971 10.1696252149095 10.0266893925512 10.1211001110812 10.0435617363125 9.70728601096625 10.0513676835238 9.96919136974818 10.1274718647761 9.39770839453315 9.98055563267173 9.85592148805573 0.101399883756861 0.102755121822914 0.108241157737892 0.102652232411646 0.102659323121845 0.121396719872394 0.100971991595019 0.100610900025870 0.106838747557146 0.104433491047021 0.0988318983817234 0.0989008738668222 0.102294989548440 0.101308231292174 0.106436838665642 0.0988318983817234 0.130876714503142 0.109402131169193 0.102060896301567 1 1|0 +|/ 11398601 11399427 11398987.5 11396383 11399695 + gene protein_coding_gene FALSE TRUE AT1G31800.1 CYP97A3/LUT5 (CYTOCHROME P450-TYPE MONOOXYGENASE 97A3); carotene beta-ring hydroxylase/ oxygen binding Encodes a protein with β-ring carotenoid hydroxylase activity. similar to LUT1 (LUTEIN DEFICIENT 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G53130.1); similar to cytochrome P450 monooxygenase CYP97A10 [Medicago truncatula] (GB:ABC59110.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABD28565.1); similar to cytochrome P450 monooxygenase CYP97C10 [Glycine max] (GB:ABD97103.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.242464442399194 -1.88700904749104 0.0941159466135973 1 2.31038855627182 19.4338491185926 -0.242464442399194 0.158286083502243
AT2G40400_at 5.94040566255284 6.4838805368803 6.83209062841281 6.80813227919701 7.00683490505117 5.50907557106644 9.14815789660877 8.70757022734488 7.24937852327678 8.18132412208603 8.02633473538437 8.83843795773626 7.95919705460316 8.07400936180782 8.59349115747291 7.93106025938127 7.51539900461208 6.9880836257963 7.81058111922338 0.276872091313062 0.271235101253790 0.282055635770063 0.267617832708869 0.269419828654169 0.28496263668682 0.271370637053406 0.270607625989316 0.285396043631456 0.275554190801904 0.270645429353090 0.267617832708869 0.272645637009005 0.296292133801979 0.271190662048104 0.272577357337116 0.282852640747379 0.279211593342187 0.28274795962538 2 2|0 +|/ 16878781 16879576 16879079.7 16876412 16880336 + gene protein_coding_gene FALSE TRUE AT2G40400.1|AT2G40400.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G56140.1); similar to Trimeric LpxA-like [Medicago truncatula] (GB:ABE84885.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44243.1); similar to Os01g0826900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044677.1); contains InterPro domain Protein of unknown function DUF399; (InterPro:IPR007314) -0.393656589255484 -1.88610267898511 0.0942493855386264 1 2.30916025345127 14.9234415797866 -0.393656589255484 0.286108060566147
AT1G17340_at 4.91248043148842 5.22800735847954 4.67962435187407 5.52722272566936 5.05693041291034 4.76032188354349 4.18992542457464 4.1622837008223 5.31767171968141 4.48642661148087 5.03328514301184 4.74644540041049 4.92334305357982 5.33831556043111 4.79886311424659 5.47289153668287 4.76389574987649 4.61905894870591 4.73356476487547 0.191192350537917 0.191192350537917 0.200888817105591 0.191192350537917 0.203611887544617 0.203354424639722 0.191952504238613 0.191916813732119 0.206553642834272 0.199572737547269 0.198241318644171 0.194053737281063 0.194304919050250 0.192960147996806 0.199549204731786 0.191874635401618 0.199126814501746 0.206500705202196 0.191747136055579 1 1|0 +|/ 5937650 5938428 5937984 5933874 5938754 + gene protein_coding_gene FALSE TRUE AT1G17340.1 phosphoinositide phosphatase family protein similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G14205.1); similar to Os03g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049173.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.249487614673489 1.88540557445793 0.0943521379168187 1 2.30821568540125 9.71854954219397 0.249487614673489 0.164785930335844
AT3G50590_at 6.42834398595166 6.52506144255152 6.35127867151451 6.67466736020482 6.95073978656295 6.69728626230969 6.42755717643482 6.6036135748631 5.99571124387841 5.8817623000097 5.79536423056326 6.01583224596666 6.11228425837665 6.04609915267149 5.91948207348914 5.99175032654151 5.92195542425999 6.11818920098999 5.62631555331904 0.131612604772822 0.135213648812277 0.133902314770777 0.141699494039691 0.142481994861407 0.139795943879855 0.134399083010843 0.134472948363904 0.145490132083020 0.140030997001928 0.132362619416889 0.131979711461298 0.130776190673295 0.137586235170831 0.131145510685207 0.130750878604035 0.137854086247863 0.130837745047018 0.133858254069358 3 3|0 +|/ 18784918 18790111 18787805.3 18782000 18790483 + gene protein_coding_gene FALSE TRUE AT3G50590.1 transducin family protein / WD-40 repeat family protein similar to vascular protein 7 [Plantago major] (GB:CAJ38417.1); similar to Os09g0408000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063140.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.16393611178467 1.88525993302919 0.094373618704043 1 2.30801835866941 12.4946765224707 0.16393611178467 0.0791465565987257
AT1G60960_at 5.09455275881489 6.03317010449846 5.95006313502312 6.01428013415989 6.23566766214512 6.13323461358949 5.65964482588073 5.8027821689315 5.37949409491272 5.53985611374659 4.72101253061923 5.29503483443736 5.90777761776258 5.93599155074249 4.89244865241562 6.43860297112618 6.12115407331185 5.31268383233474 5.61994747506264 0.220013065000440 0.216851019220366 0.218049382786604 0.213932429195346 0.211133429887851 0.225578898060675 0.211133429887851 0.22068016913892 0.227226682910373 0.216675421733684 0.217889748527226 0.213136801092507 0.216929746391926 0.225819394087389 0.221485563486878 0.211133429887851 0.228401896134512 0.215310995979422 0.217346855881861 1 1 - 22449091 22449716 22449364.818 22448978 22450879 - gene protein_coding_gene FALSE TRUE AT1G60960.1 IRT3 (Iron regulated transporter 3); cation transporter/ metal ion transporter member of Fe(II) transporter isolog family Identical to Fe(II) transport protein 3, chloroplast precursor (Iron-regulated transporter 3) (IRT3) [Arabidopsis Thaliana] (GB:Q8LE59;GB:Q8W244;GB:Q9C957); similar to ZIP4 (ZINC TRANSPORTER 4 PRECURSOR), cation transporter [Arabidopsis thaliana] (TAIR:AT1G10970.1); similar to Zn/Cd transporter homolog [Thlaspi japonicum] (GB:BAD13506.1); similar to putative Zn transporter ZNT4 [Thlaspi caerulescens] (GB:AAG44953.1); similar to ZIP-like zinc transporter [Thlaspi caerulescens] (GB:AAK69430.1); contains InterPro domain Zinc/iron permease, fungi and plants; (InterPro:IPR004698); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.250381475817224 1.88496881127896 0.0944165704193796 1 2.30762393966934 11.4110181682559 0.250381475817224 0.165636654382374
AT4G13800_at 4.8722908043738 4.6982242341433 7.42578596655885 7.49054962564307 7.82638760495436 5.95764246917041 9.13136848465422 8.44570441944352 5.45305091578377 6.75089492604901 5.89491037111885 5.40495832561105 7.18035501765786 7.49066179210458 5.09031931192546 7.62801306063148 7.90810223040523 6.87943592793229 6.20840175867618 0.222644322855769 0.219393677147998 0.223257527704342 0.217484948392606 0.210811901989733 0.232256147062422 0.217969650610644 0.210811901989733 0.222442416654222 0.214259484080807 0.213686471655121 0.215491429904101 0.210811901989733 0.222375890638038 0.215738838173622 0.212036888345361 0.214144825520728 0.218090921201808 0.213645543500615 4 4|0 -|/ 8002135 8003029 8002514.5 8001858 8004135 - gene protein_coding_gene FALSE TRUE AT4G13800.1 permease-related similar to permease-related [Arabidopsis thaliana] (TAIR:AT3G23870.1); similar to OSJNBa0069D17.4 [Oryza sativa (japonica cultivar-group)] (GB:CAD40575.1); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); similar to Protein of unknown function DUF803 [Medicago truncatula] (GB:ABE89975.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) 0.467669867715832 1.88457264981842 0.0944750493347852 1 2.30708724492203 13.3920160535392 0.467669867715832 0.345972461705705
AT2G24790_at 10.7112275045104 10.9722907060379 10.6921200959917 10.7931235719244 11.4122194961142 11.0844509212096 11.3023213793120 11.3169663951435 11.3958645428705 11.2792590294199 11.1966841537589 11.1930355832173 11.1630224192766 11.0389707263039 11.0805609102897 11.2181917064408 10.7994582211979 11.1547130634692 11.3624491069558 0.0743156332884754 0.0735496621864985 0.0758530723914688 0.0764255239036128 0.0771995076570867 0.0778374885727698 0.0754112382917359 0.0764933412623419 0.075320157416836 0.0748427052568519 0.0728279633626468 0.0736292159668717 0.0742893518886591 0.0773789761701936 0.0780531546246713 0.0728279633626468 0.089343493605316 0.0752069966891065 0.075748769192383 2 2 + 10574334 10574981 10574615.909 10573977 10575224 + gene protein_coding_gene FALSE TRUE AT2G24790.1|AT2G24790.2 COL3 (CONSTANS-LIKE 3); protein binding / transcription factor/ zinc ion binding|COL3 (CONSTANS-LIKE 3); zinc ion binding Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching. Identical to Zinc finger protein CONSTANS-LIKE 3 (COL3) [Arabidopsis Thaliana] (GB:Q9SK53;GB:Q8LDY3); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G24930.1); similar to CONSTANS-like 1 protein [Raphanus sativus] (GB:AAC35496.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain CCT; (InterPro:IPR010402); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315)|Identical to Zinc finger protein CONSTANS-LIKE 3 (COL3) [Arabidopsis Thaliana] (GB:Q9SK53;GB:Q8LDY3); similar to zinc finger (B-box type) family protein [Arabidopsis thaliana] (TAIR:AT5G24930.1); similar to CONSTANS-like 1 protein [Raphanus sativus] (GB:AAC35496.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) -0.160250468347735 -1.88450781194094 0.094484623573404 1 2.30699941043206 22.261308587652 -0.160250468347735 0.0746350102172287
AT1G27435_at 7.57131866721768 8.11058576880295 7.4065824735028 7.57545511351041 7.28517485626281 7.51950652185396 7.61717479797353 8.33192702390875 8.31829541471295 8.3017162357925 8.32318407202142 8.41137438904908 8.24957532403726 8.53682731534894 8.33805901285964 8.13227665842216 7.83265475049728 8.15888009335965 8.22223623792684 0.136953860935173 0.137365305291338 0.140414379854610 0.137112853848318 0.13625867106748 0.139605518933459 0.138116277904475 0.137728947137584 0.137965170196637 0.141158886437193 0.133808975423865 0.143610600942803 0.137825720933391 0.145009405434755 0.142476346462048 0.133808975423865 0.142230509982038 0.133808975423865 0.140842494116832 1 1|0 -|/ 9527953 9528775 9528425.7 9527561 9528865 - gene protein_coding_gene FALSE TRUE AT1G27435.1 similar to Os12g0477600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066758.1) -0.246983583693953 -1.88313042750479 0.0946882315750955 1 2.30513375043275 15.9415172769259 -0.246983583693953 0.162810233251927
AT4G26310_at 5.12118259648686 5.86181413734272 5.6149351963642 5.69998269280184 5.85295600682306 5.21530644944675 6.03661962805915 5.92300271436453 5.19779674240691 5.55336189858056 5.43311871204826 4.88974648485736 5.13856526873165 5.11954455870149 4.96769705255781 5.12720498433047 4.48254407717032 4.8160153831820 5.35480141827824 0.233072496922287 0.229824435987667 0.231431704750790 0.234671050625017 0.230876837770583 0.229938267493225 0.226650513719047 0.226653800887291 0.229703001703778 0.230216473768751 0.229055898617094 0.226650513719047 0.231093047870537 0.235040606500247 0.231462140767691 0.229731458463071 0.24259400404198 0.241618159401103 0.232108287652384 4 4|0 -|/ 13314171 13315858 13314765.667 13313779 13316125 - gene protein_coding_gene FALSE TRUE AT4G26310.1 elongation factor P (EF-P) family protein similar to elongation factor P (EF-P) family protein [Arabidopsis thaliana] (TAIR:AT3G08740.1); similar to putative translation elongation factor P [Oryza sativa (japonica cultivar-group)] (GB:AAP21425.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Elongation factor, KOW-like; (InterPro:IPR013185); contains InterPro domain Elongation factor P/YeiP; (InterPro:IPR001059); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.255854235297751 -1.88169797962210 0.0949004204362369 1 2.30319402141331 10.8484538868541 -0.255854235297751 0.170901790497650
AT4G09460_at 7.25319832625603 7.65636262069642 6.20527553869251 6.04757345555386 6.71342920398218 6.80875653957844 4.43555455064845 5.06178681148193 6.75053322004806 5.08410215488297 6.66247561101469 6.6766504442181 6.2736564710286 6.81528121463036 5.69798615168687 6.86748576142632 5.63395768918926 5.46733212172105 6.69287819702668 0.245990316680505 0.236458390673127 0.239407726612601 0.242059839869558 0.243902955400271 0.246070497995423 0.239289928423768 0.240538224613399 0.251037509662875 0.252641092310376 0.241472047358392 0.236175125627841 0.249750762109292 0.239450947363934 0.236188461916011 0.240648897296302 0.245594664735379 0.238883786988578 0.24099053727648 4 4 + 5993139 5993987 5993708.545 5992963 5994255 + gene protein_coding_gene FALSE TRUE AT4G09460.1 ATMYB6 (myb domain protein 6, myb domain protein 8); DNA binding / transcription factor Encodes myb6 DNA-binding protein. similar to HOS10 (HIGH RESPONSE TO OSMOTIC STRESS 10), DNA binding [Arabidopsis thaliana] (TAIR:AT1G35515.1); similar to myb-like transcription factor 1 [Gossypium hirsutum] (GB:AAN28270.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.214024216488103 1.87900174461337 0.0953010376417846 1 2.29954437943667 12.4915876510780 0.214024216488103 0.132775398923032
AT1G31820_at 8.18369592174004 8.47299919627895 9.4197237555674 9.56515576187169 9.38354730135528 8.9279987072756 9.38646316877422 9.3258335237474 7.99556176531603 8.46066521431545 7.57337729789173 4.08474749180803 8.24151291832791 7.94944574517019 4.68415325190501 8.53825347208135 8.923629483684 8.19323786351794 7.8834220930747 0.190663021555099 0.179574860687831 0.186485444184282 0.186648295411726 0.182328051589351 0.189230830419508 0.187556243753848 0.184064417776176 0.188404629948966 0.183221236713014 0.184938246823225 0.206920700171097 0.182145788490045 0.183840106078156 0.209260592426473 0.180278383663610 0.184151258102741 0.186907694851698 0.182394686149222 1 1 - 11416728 11417241 11416954.818 11416432 11418260 - gene protein_coding_gene FALSE TRUE AT1G31820.1 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT1G31830.2); similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT5G05630.1); similar to putative amino acid permease [Oryza sativa (japonica cultivar-group)] (GB:AAR10855.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97257.1); similar to Os03g0576900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050538.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -0.178906619069056 -1.87691625123692 0.0956120071407945 1 2.29672272395516 16.7765576911348 -0.178906619069056 0.09728802114268
AT4G35800_at 6.11570667393378 6.03155608369004 5.77621651111988 5.76392000352942 7.01937250406240 6.64525104351817 5.86592835133191 5.10880883338009 6.53561593268041 5.99311586725552 6.24675086799283 5.59776786588529 6.50231766515818 6.13459862811634 6.1873728901728 7.0683636475804 6.48801541263266 5.9045854452508 6.4597313323211 0.197058344545486 0.208272631491707 0.194019721355466 0.195352313020195 0.194019721355466 0.200646159990133 0.194033183306083 0.200242914966785 0.202848142752276 0.194019721355466 0.199539353952847 0.214208805537062 0.206863880643075 0.213180744987151 0.195845326827158 0.194019721355466 0.194019721355466 0.194019721355466 0.200146951119027 4 4|0 -|/ 16961177 16961717 16961513.3 16960661 16967896 - gene protein_coding_gene FALSE TRUE AT4G35800.1 NRPB1 (RNA POLYMERASE II LARGE SUBUNIT); DNA binding / DNA-directed RNA polymerase Encodes a large subunit of RNA polymerase II (aka RNA polymerase B). Identical to DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6) (RPB205) [Arabidopsis Thaliana] (GB:P18616;GB:P31635;GB:Q9SZS8); similar to NRPC1 (nuclear RNA polymerase C 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT5G60040.1); similar to RNA polymerase II largest subunit [Dictyostelium discoideum AX4] (GB:XP_641735.1); similar to DNA-dependent RNA polymerase II largest subunit [Glaucocystis nostochinearum] (GB:ABA64469.1); similar to putative RNA polymerase II [Oryza sativa (japonica cultivar-group)] (GB:AAV32202.1); contains InterPro domain RNA polymerase Rpb1, domain 7; (InterPro:IPR007073); contains InterPro domain RNA polymerase Rpb1, domain 6; (InterPro:IPR007075); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro domain RNA polymerase Rpb1, domain 5; (InterPro:IPR007081); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain Eukaryotic RNA polymerase II heptapeptide repeat; (InterPro:IPR000684); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) 0.228711936034915 1.87663278373677 0.0956543493373001 1 2.29633928135979 12.3386996323712 0.228711936034915 0.146885528105535
AT3G18520_at 5.03589361369151 4.5738980150406 4.63914281794493 4.48736020317245 5.3940679544763 4.86397472889363 4.68771909434215 4.66218556668048 5.51409232662684 4.8926506049435 4.87176745448756 4.64088525501391 4.36910946770502 5.12869702847712 4.37286491738826 5.21466699000596 4.95874145663982 4.29906005144523 5.3394674683108 0.207041808319145 0.208212604591117 0.216533570860529 0.214443236500754 0.210490031533702 0.215950333531198 0.217605987035249 0.212112908781985 0.221156098436470 0.216123523976188 0.207824405278275 0.207041808319145 0.209086303576086 0.216162558417089 0.214717172936901 0.210944411083600 0.219086085441938 0.215608273071885 0.217546142166051 3 3|0 +|/ 6364364 6365337 6364902.222 6361182 6365621 + gene protein_coding_gene FALSE TRUE AT3G18520.1|AT3G18520.2 HDA15 (histone deacetylase 15); histone deacetylase Encodes a protein with similarity to histone deacetylases. similar to HDA05 (HISTONE DEACETYLASE5), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61060.1); similar to histone deacetylase HDA110 isoform 2 [Zea mays] (GB:AAM93213.1); similar to histone deacetylase HDA110 isoform 1 [Zea mays] (GB:AAM93212.1); similar to Os07g0164100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058957.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286)|similar to HDA05 (HISTONE DEACETYLASE5), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G61060.1); similar to putative histone deacetylase [Oryza sativa (japonica cultivar-group)] (GB:BAC79741.1); similar to Os07g0164100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058957.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286) -0.205275184315938 -1.87640745011632 0.0956880206139318 1 2.29603449047509 9.78338568808313 -0.205275184315938 0.124566747793852
AT2G18960_at 12.0539189895296 12.1988319813677 12.4555939132919 12.4934068864102 12.0949326605813 12.0170643292091 12.0408077163250 12.2987680833927 12.0491397232224 12.0245978752898 12.1618529780546 12.0975429884452 12.2238968359858 11.9506935864021 12.1985285368669 12.0906402138881 12.1228608923243 12.3547619362904 11.8608998378698 0.0738157782314892 0.072742105313816 0.0758740113189669 0.0753599895807773 0.0731625108801147 0.0762975586371215 0.0729400531082975 0.073755792024242 0.0800402670791825 0.0734646907258047 0.0753955302834936 0.072687169270056 0.0730623615503778 0.0834911814987513 0.0773375313954358 0.0735523658017503 0.076763373281953 0.0765824433533623 0.0744501686052624 2 2|0 +|/ 8233533 8234325 8233882.778 8228713 8234701 + gene protein_coding_gene FALSE TRUE AT2G18960.1 AHA1 (PLASMA MEMBRANE PROTON ATPASE); ATPase plasma membrane proton ATPase Identical to ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1) (AHA1) [Arabidopsis Thaliana] (GB:P20649;GB:O64626); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to AHA2 (Arabidopsis H(+)-ATPase 2), ATPase [Arabidopsis thaliana] (TAIR:AT4G30190.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to plasma membrane H+-ATPase [Lycopersicon esculentum] (GB:AAB17186.1); similar to H(+)-transporting ATPase [Solanum tuberosum] (GB:CAA54045.1); similar to plasma membrane proton pump H+ ATPase (GB:AAA32813.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.144526260978800 1.87622058345745 0.0957159523444267 1 2.29578174074676 24.2708204324265 0.144526260978800 0.0533493102135545
AT4G31140_at 5.45594169076894 5.4073476144247 5.32242530138183 5.14977516025648 5.53082448941352 5.76026179066823 5.77755237123077 6.30099803920367 5.05734839244464 4.83895209940468 5.54945002030595 6.14114972717201 5.75388984598704 5.94703065300954 5.80934288931575 5.92638561252231 5.50270530032413 5.57277590726389 5.43794195430719 0.181372015218205 0.178880452651009 0.179123808392361 0.179479446372419 0.174741814532436 0.182708990154849 0.175898934606773 0.176437543184125 0.174741814532436 0.183249528684824 0.179417921439182 0.179095764611915 0.180664092182397 0.177176720567481 0.185090938687538 0.175604695901891 0.176820072661216 0.178554208131079 0.179947974470227 4 4 + 15142635 15143164 15142901 15141294 15143397 + gene protein_coding_gene FALSE TRUE AT4G31140.1 glycosyl hydrolase family 17 protein Identical to Putative glucan endo-1,3-beta-glucosidase 5 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 5) ((1->3)-beta-glucanase 5) (Beta- 1,3-endoglucanase 5) (Beta-1,3-glucanase 5) [Arabidopsis Thaliana] (GB:Q9M088); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G58090.1); similar to Os02g0139300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045844.1); similar to Os08g0224500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061277.1); similar to putative 1,3-beta-glucanase [Oryza sativa (japonica cultivar-group)] (GB:AAP12947.1); contains InterPro domain X8; (InterPro:IPR012946); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.184644426145868 1.87520224567999 0.0958683032690265 1 2.29440452912001 11.0315185037717 0.184644426145868 0.103660508933578
AT2G46020_at 5.95459620854928 5.66349402055031 6.07231983791174 5.69423915852525 5.99474460826838 6.2801526691759 5.61227068207745 5.293172259637 5.16326038145476 5.27178059864325 5.30159014109443 5.03372693020692 5.22984740229314 5.1078311061188 5.23058539072019 5.54531446528314 5.27201802897372 4.98497972433738 5.19370600121325 0.158352662028079 0.157125785660318 0.160279714787710 0.162509330551071 0.158517579698727 0.164289811133554 0.161756512413012 0.157744980154617 0.165374105426958 0.158731781484088 0.157785350345657 0.156986428882440 0.156755830011077 0.154419116926697 0.158350269925528 0.156674910291749 0.162929376849421 0.156720988940592 0.157378407401932 2 2|0 +|/ 18933071 18938747 18936053.714 18930377 18939007 + gene protein_coding_gene FALSE TRUE AT2G46020.1|AT2G46020.2 ATBRM/CHR2 (ARABIDOPSIS THALIANA BRAHMA); ATP binding / DNA binding / helicase/ transcription regulator Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. Interacts strongly with AtSWI3C, also with AtSWI3B, but not with AtSWI3A or AtSWI3D.|Encodes a SWI/SNF chromatin remodeling ATPase that upregulates transcription of all three CUC genes and is involved in the formation and/or maintenance of boundary cells during embryogenesis. similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.3); similar to Os02g0114000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045665.1); similar to SNF2-related; HMG-I and HMG-Y, DNA-binding; Bromodomain; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE80161.1); similar to SNF2 family DNA-dependent ATPase (ISS) [Ostreococcus tauri] (GB:CAL54651.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020)|similar to SYD (SPLAYED) [Arabidopsis thaliana] (TAIR:AT2G28290.3); similar to Os02g0114000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045665.1); similar to SNF2-related; HMG-I and HMG-Y, DNA-binding; Bromodomain; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE80161.1); similar to SNF2 family DNA-dependent ATPase (ISS) [Ostreococcus tauri] (GB:CAL54651.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Bromodomain; (InterPro:IPR001487) 0.191567548645761 1.87491187575488 0.0959117868413855 1 2.29401187871064 11.0320331684530 0.191567548645761 0.110939654401713
AT4G12470_at 9.3709851890689 10.0135070413611 4.73704170723503 4.77245820368043 8.70519071875026 8.7148672625753 3.84286554566754 4.45213698862472 3.06748429925758 4.53039374947654 3.25599266086454 2.70724209035455 3.54641027367468 3.70468252435575 3.03617535062243 2.85993655666189 3.16716419956416 2.58907589996259 2.5770068711578 0.303812394490199 0.301182201882161 0.290629315084979 0.299286975666258 0.30096150340904 0.300842716721141 0.295708410349702 0.291512912000270 0.290332519546600 0.310638071355404 0.290332519546600 0.290332519546600 0.290332519546600 0.291956674609292 0.295770576138241 0.294411877246909 0.310584036891646 0.293265908307244 0.296909847125545 4 4 - 7401371 7401773 7401564.545 7401106 7401904 - gene protein_coding_gene FALSE TRUE AT4G12470.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to pEARLI 1, lipid binding [Arabidopsis thaliana] (TAIR:AT4G12480.1); similar to HyPRP [Fragaria x ananassa] (GB:AAD01800.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.235388790121688 -1.87385657405546 0.0960699780859463 1 2.29258503949702 10.0761132076895 -0.235388790121688 0.153365294741539
AT2G45860_at 5.83345051644195 6.3915789077127 5.56487748951257 6.02695007927091 6.1627923713778 5.72366199206657 5.64237669088674 5.9929804477112 5.20523816742397 4.80100826431373 5.86018284102872 5.84940588824647 5.34471310519312 5.317068230237 6.48407772618309 5.45707831892859 5.30224518639242 4.73107626903718 4.88972266832363 0.188688471845094 0.194522446195823 0.187962673877214 0.191820260359982 0.188973425968088 0.197672851638171 0.187537380769599 0.197941911543944 0.191619559507822 0.193932392053310 0.193821006375692 0.186772121103168 0.190607602951999 0.19415109240782 0.194656803610293 0.189714031346051 0.188541495245255 0.19762437156631 0.189074197863312 2 2|0 -|/ 18881992 18882611 18882218.4 18881834 18882660 - gene protein_coding_gene FALSE TRUE AT2G45860.1 similar to Os02g0824400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048575.1) 0.241190877335431 1.87372159582745 0.0960902293304932 1 2.29240256065368 11.1716105513774 0.241190877335431 0.158680545275114
AT3G15095_at 8.10981477659914 8.47242642999018 7.2570592652208 7.33495034477874 8.18320328771797 8.2933886764313 7.67115226657581 7.72112547940529 7.77171329014272 8.12705774457847 7.93974095895444 8.1833840768189 8.09836711531166 7.7005458120862 8.28749814333515 8.43831221706598 7.7768965522247 7.80329530013745 8.43072757216298 0.123136381945843 0.120379061349176 0.130633982598535 0.132564358610966 0.128153439206003 0.123100879625035 0.125267018705012 0.128086258024304 0.134110659278462 0.123155746656025 0.128219338251665 0.123879603001442 0.120008800293826 0.134435473747568 0.121857347640443 0.126741919839764 0.123666545935532 0.133093622981851 0.122197285571036 3 3 + 5083547 5083992 5083787.455 5081787 5084088 + gene protein_coding_gene FALSE TRUE AT3G15095.1|AT3G15095.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22230.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G78110.1); similar to Os06g0352900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057589.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001185087.1)|similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to Os06g0352900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057589.1); similar to PREDICTED: hypothetical protein, partial [Strongylocentrotus purpuratus] (GB:XP_001185087.1) -0.153903595787491 -1.87341203311787 0.0961366893489026 1 2.29198407661929 15.9495590113165 -0.153903595787491 0.0675118101814162
AT1G71070_at 6.18761008971878 5.99247499751888 5.69926046964385 5.90065814805872 5.70068561177613 5.81833846542008 6.79838108772823 6.8083104933164 4.75585612550235 5.13431421421703 6.36066021663806 6.00067122808535 5.53040521603494 5.65744395304358 5.99024472209283 5.31212682029043 4.60997940060641 5.35764080507684 5.7791884950257 0.234536336882485 0.228682132144692 0.228682132144692 0.236214972398179 0.231410712327470 0.240325619836618 0.235046774376905 0.231170510507050 0.267933274946310 0.228682132144692 0.239869978891028 0.228682132144692 0.228682132144692 0.245978253214813 0.232359619480359 0.228682132144692 0.251396873955343 0.242204359158075 0.245757183410579 1 1|0 -|/ 26811204 26811740 26811421.3 26810850 26813166 - gene protein_coding_gene FALSE TRUE AT1G71070.1 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT5G39990.1); similar to putative xylosyltransferase I [Oryza sativa (japonica cultivar-group)] (GB:BAB40033.1); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) -0.143840779847010 -1.87286039131733 0.0962195339900912 1 2.29123839836754 11.5259729988053 -0.143840779847010 0.0526551387287192
AT3G20100_at 7.15671069823275 7.16806148366022 8.49558593889903 8.39241853846837 7.58030758933183 7.67459823504836 7.95146825241334 8.19830966028268 7.04458210278715 7.51474393058076 7.02567734014245 5.83497955051142 7.68392736177377 7.61316019728707 5.6910460807349 7.83567561734025 8.06536938840143 7.5541845366153 7.33091431578664 0.171499573859667 0.166748681575064 0.163772181705315 0.169499476089883 0.161883759385638 0.174299104334380 0.163606850254030 0.165871057081022 0.177015744489603 0.170208960534455 0.169986941518933 0.196351723072348 0.164308119687221 0.171482346821376 0.170399409109829 0.162749371556148 0.162408765328658 0.164750779302517 0.172195296282202 3 3 + 7020056 7020484 7020340.364 7019001 7020907 + gene protein_coding_gene FALSE TRUE AT3G20100.1 CYP705A19 (cytochrome P450, family 705, subfamily A, polypeptide 19); oxygen binding member of CYP705A similar to CYP705A2 (cytochrome P450, family 705, subfamily A, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G15350.1); similar to CYP705A30 (cytochrome P450, family 705, subfamily A, polypeptide 30), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20940.1); similar to CYP705A22 (cytochrome P450, family 705, subfamily A, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G20130.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE94646.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.141672888919478 1.87195771896020 0.0963552416290619 1 2.29001838754272 15.0570571956182 0.141672888919478 0.0491285577731232
AT3G24570_at 7.00641605844211 7.48939595867413 6.47937976322095 7.08091810858382 6.87752524061326 6.78339384954661 7.42837678922888 7.25707935643119 7.59730301292124 7.22254307483852 7.38635589532735 7.6514640753687 6.76601155005116 7.49474974389958 7.70057940439625 7.39582314165631 6.71087294474105 7.60035856705784 7.0352781083773 0.166097795016444 0.165606350542512 0.185013862450539 0.167836814275095 0.162567254621647 0.168614929511580 0.165412621507722 0.165861558059412 0.169505797268737 0.160325200410495 0.168504032951741 0.172620930811442 0.170359041726985 0.162705028552221 0.168830676390453 0.16246022221537 0.176202374867375 0.170085826397673 0.160765251421524 3 3|0 -|/ 8966760 8968401 8967033.7 8966528 8968664 - gene protein_coding_gene FALSE TRUE AT3G24570.1 peroxisomal membrane 22 kDa family protein similar to peroxisomal membrane 22 kDa family protein [Arabidopsis thaliana] (TAIR:AT5G43140.1); similar to Os01g0228300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042476.1); similar to hypothetical protein DDBDRAFT_0205515 [Dictyostelium discoideum AX4] (GB:XP_642423.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) -0.218388641801494 -1.87192274668072 0.0963605030014156 1 2.28997112487148 14.3619697976049 -0.218388641801494 0.137719495107360
AT3G16640_at 12.4588290626775 12.8648521166876 12.2865791038192 12.5264841082638 12.7113344952734 12.5744903846324 12.2308311714805 12.7814856838561 12.9689044102897 12.7921052315476 12.8103482808575 12.6206762416561 13.0231302254978 12.7456302777099 12.2379448766756 12.6279910797903 12.0453295742349 12.57896771305 13.0661682428361 0.0965192007123185 0.09809050806398 0.101288729902506 0.0965192007123185 0.0965192007123185 0.102011336843257 0.0970726336217314 0.0973067929319237 0.100817371804781 0.0965192007123185 0.0984524304349668 0.0975878938585538 0.0965192007123185 0.100047981169578 0.100322948440235 0.097285010620279 0.108847729883894 0.099697679228568 0.0965192007123185 3 0|3 /|- 5669740 5670353 5670072.111 5669379 5670848 - gene protein_coding_gene FALSE TRUE AT3G16640.1 TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN) Encodes a protein homologous to TRANSCRIPTIONALLY CONTROLLED TUMOR PROTEIN (TCTP). Identical to Translationally-controlled tumor protein homolog (TCTP) (TCTP) [Arabidopsis Thaliana] (GB:P31265;GB:Q8L973;GB:Q9LUS0); similar to translationally controlled tumor family protein [Arabidopsis thaliana] (TAIR:AT3G05540.1); similar to Translationally-controlled tumor protein homolog (TCTP) (GB:Q944W6); contains InterPro domain Translationally controlled tumor protein; (InterPro:IPR001983); contains InterPro domain Mss4-like; (InterPro:IPR011057) -0.207708915109350 -1.8696607778091 0.0967013810668997 1 2.28691490436196 25.3186832217906 -0.207708915109350 0.127680551214725
AT3G48140_at 12.0678805292081 12.2576481515899 12.3139774642414 12.4468115189095 11.9733223542012 11.9996198682073 11.6901185993559 12.0698281929698 12.4560629144421 11.9983820781787 12.5422436168449 12.4059313334693 12.2938114185487 12.3873860337410 12.2376016095594 12.3697562495710 12.1429851798291 12.2198803273662 12.0410210345371 0.0623479815174536 0.0617468421808506 0.0658944801795368 0.0643005132536295 0.0655752989740525 0.0657991317049409 0.0629181848208723 0.0617468421808506 0.073989064225454 0.0645272758278347 0.0659323949841051 0.0617468421808506 0.0632497610564108 0.0638510394031125 0.0672082816988499 0.0617468421808506 0.066647536907201 0.0677560331415663 0.0642344181760952 3 3|0 +|/ 17789457 17790260 17789981.5 17789341 17790534 + gene protein_coding_gene FALSE TRUE AT3G48140.1 senescence-associated protein, putative similar to germination protein-related [Arabidopsis thaliana] (TAIR:AT3G29970.1); similar to HvB12D [Hordeum vulgare subsp. vulgare] (GB:CAA54065.1); contains InterPro domain B12D; (InterPro:IPR010530) 0.160929030919597 1.86953596657202 0.0967202232728285 1 2.28674630669463 24.3474532415865 0.160929030919597 0.0771069851674151
AT3G52920_at 6.76691527169418 7.0868386297877 7.07106934472973 7.07385907220872 7.46951692514026 7.33778960279984 8.16210965415912 8.14377072596579 7.74629253997591 8.18958338384493 8.3946487758235 8.21723981511145 8.18210487535932 8.1373866421413 7.61740814442034 8.34778404440923 8.48620062267634 7.51778189631382 8.38593631671056 0.192904233097264 0.166391968746333 0.184117732724045 0.171090493858038 0.166585430755591 0.179247497500231 0.166434249581766 0.172606572519107 0.195616198850915 0.164568259115178 0.170263254594130 0.16474587427922 0.170931990289627 0.171961102257802 0.172046703612727 0.163639233844156 0.178484605421558 0.172268265816774 0.163639233844156 3 3|0 +|/ 19635604 19636935 19636336.111 19635321 19637236 + gene protein_coding_gene FALSE TRUE AT3G52920.1|AT3G52920.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36410.1); similar to Os04g0408600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052720.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); similar to OSJNBa0042I15.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04893.2); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G36410.2); similar to Os04g0408600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052720.1); similar to hypothetical protein [Ipomoea trifida] (GB:AAS79606.1); similar to OSJNBa0042I15.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04893.2); contains InterPro domain Protein of unknown function DUF662; (InterPro:IPR007033) -0.148275614496976 -1.86952109707827 0.0967224682868138 1 2.28672622093853 15.4989037027485 -0.148275614496976 0.0599596679932892
AT3G60590_at 8.10487874958703 8.24770032805453 8.16419035547312 8.30709718267316 9.06450368780486 8.58914805470038 8.32699802866686 8.4142511670293 8.28145971170096 7.53341337169783 7.32551496833963 7.32753079956489 8.52287653539127 8.14550679661039 6.78577406207654 8.15507038788743 8.41831770431612 7.73933772462803 7.33237225293075 0.202048284597849 0.192375721279159 0.199655095203620 0.197792446839598 0.194551461479692 0.193874850798528 0.196306233987942 0.192375721279159 0.212322530003218 0.196031618178389 0.201471001309395 0.195179536019201 0.196088027377045 0.196094476640589 0.213237877616760 0.192375721279159 0.192375721279159 0.198650573723881 0.193518304123428 3 3 + 22410145 22410593 22410347.727 22409203 22410879 + gene protein_coding_gene FALSE TRUE AT3G60590.1|AT3G60590.2|AT3G60590.3 |DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48460.1); similar to Os04g0534500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053417.1); similar to hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula] (GB:ABE93586.1); similar to OSJNBb0020O11.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04786.3)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48460.1); similar to Os04g0534500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053417.1); similar to hypothetical protein MtrDRAFT_AC124952g33v1 [Medicago truncatula] (GB:ABE93586.1); similar to OSJNBb0020O11.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE04786.3); contains InterPro domain DNA breaking-rejoining enzyme, catalytic core; (InterPro:IPR011010) 0.172260214368528 1.86933014628792 0.0967513026494634 1 2.28646828918674 16.1614657281461 0.172260214368528 0.0906509905987274
AT3G58040_at 5.97547705442645 5.69333010519053 5.80881748292695 6.06938191542683 6.44836275254702 5.7975725622133 6.19140442181955 6.19399931127627 4.89684536280763 5.18833767181626 5.56212110332755 5.6694402712759 5.88866891137265 5.94907812876943 5.02432494572711 6.07964505018165 5.33842965801691 5.0891128958707 5.42786052455439 0.255835136347205 0.256261347784376 0.262715482244909 0.257195656905977 0.254816048954339 0.281123310561922 0.258650765540495 0.257117794166465 0.272052339835766 0.255789366955996 0.254816048954339 0.255992816814775 0.260677175811733 0.257944846339439 0.261054034037634 0.254816048954339 0.268505044243438 0.259799635993259 0.254816048954339 3 3 + 21501044 21501987 21501530 21499493 21502465 + gene protein_coding_gene FALSE TRUE AT3G58040.1 seven in absentia (SINA) family protein Identical to E3 ubiquitin-protein ligase SINAT2 (EC 6.3.2.-) (Seven in absentia homolog 2) (SINAT2) [Arabidopsis Thaliana] (GB:Q9M2P4); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT2G41980.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.210784527970985 1.86875687767947 0.096837917470878 1 2.28569398900886 11.3953517708753 0.210784527970985 0.130772009499612
AT1G70310_at 9.82895849514268 9.81283651772257 9.83111581512503 9.76765965153703 10.2063179145242 10.1710948003726 9.96110235466574 10.0681178682291 10.1110566534842 10.0295522026300 10.3079131730063 10.2238876965656 10.244547196753 10.1115721466921 10.4525768592282 10.1373994915022 10.1192509826207 10.4690572485805 10.0848877741017 0.069769312272586 0.0686844155274559 0.0772157745127327 0.0700971448210033 0.0680306511037388 0.0688055001226584 0.0750309786943522 0.0672371986109687 0.0735498928957835 0.0719776020303585 0.069371279494171 0.0672371986109687 0.0676279507664449 0.0739951185522637 0.071274442087263 0.0679294152712968 0.0754965480138542 0.0700478719881134 0.0697971488270996 1 1|0 -|/ 26489334 26489924 26489646.333 26488969 26491098 - gene protein_coding_gene FALSE TRUE AT1G70310.1 SPDS2 (SPERMIDINE SYNTHASE 2) Spermidine synthase. Identical to Spermidine synthase 2 (EC 2.5.1.16) (Putrescine aminopropyltransferase 2) (SPDSY 2) (SPDSYN2) [Arabidopsis Thaliana] (GB:O48661;GB:O64606); similar to SPDS1 (SPERMIDINE SYNTHASE 1) [Arabidopsis thaliana] (TAIR:AT1G23820.1); similar to Spermidine synthase (Putrescine aminopropyltransferase) (SPDSY) (GB:Q9ZS45); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Spermine synthase; (InterPro:IPR001045) 0.129701646206481 1.86810900013816 0.0969358932351724 1 2.28481901992979 20.1226209985518 0.129701646206481 0.0225500192754777
AT3G62810_at 7.29798712533489 7.4067405682409 6.58592784807217 6.7779307751406 6.14726452438672 6.75845979467176 6.40905090466367 6.62093350435656 6.30016312975476 5.94520521595046 6.12993983881547 6.17560210849358 6.01644963731269 6.05331850199042 6.37516415012207 5.9133445570516 5.31713149413642 6.08302190171825 5.86757114843422 0.187576304127931 0.191341813853207 0.193439796365894 0.188501441309258 0.186068643216966 0.197169491862607 0.189003868872260 0.188515501979767 0.19501191079453 0.196628949598257 0.185676858943914 0.192604813158131 0.186164333400934 0.191127987064707 0.190190012198201 0.187973065053089 0.198962217418067 0.185676858943914 0.194097433123288 3 3 + 23238740 23239097 23238893.182 23238657 23239373 + gene protein_coding_gene FALSE TRUE AT3G62810.1 complex 1 family protein / LVR family protein similar to Complex 1 LYR protein [Medicago truncatula] (GB:ABE84987.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) -0.197966132211306 -1.86720636419010 0.0970725514109197 1 2.28360017899511 12.7733583914842 -0.197966132211306 0.118279581317039
AT1G22630_at 9.24358312152463 9.28837874324172 9.47625041370083 9.481027149434 9.89574412841497 9.37400255416759 10.1114542875402 9.74494327780783 9.07548062337169 9.7192926684682 9.99034606777511 9.87615806753656 9.5502896323582 9.84650518830938 9.48048596737517 10.0117376769517 10.0322457561709 9.60001688214055 9.33699048568068 0.132371411726872 0.132444445603228 0.135000671438413 0.134310377591375 0.137155792984461 0.140603470517956 0.135517784206324 0.144323425390076 0.154185118645725 0.138431951018619 0.140948189609433 0.135034941819022 0.14336294056481 0.13896666276993 0.142187148320305 0.132324559048746 0.138788620595994 0.137561778744257 0.13649564549178 1 1|0 +|/ 8003476 8003737 8003562.1 8003304 8004293 + gene protein_coding_gene FALSE TRUE AT1G22630.1 similar to Os05g0105800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054413.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938) 0.190442383110535 1.86695389142038 0.0971108081454704 1 2.28325930003907 19.164786833146 0.190442383110535 0.110616191245911
AT3G62800_at 6.03435644520014 6.40308400491785 5.98226253623202 6.2113026025159 6.4411930727833 6.42839911124313 6.29262827947949 6.19217323205077 6.00781120126886 5.25222425460644 4.99348772521785 5.12785208167439 5.27792314939413 5.17681164639672 5.14025274551411 5.5024714714528 5.37029455594271 5.57168248943078 5.62018112983696 0.226151684751944 0.224575133979984 0.226926652479373 0.226814311252252 0.228911713255961 0.230603004083273 0.236223061955157 0.223086291598108 0.236195011269663 0.24520283214395 0.224352404688129 0.228147334880421 0.228001866624056 0.240390555069690 0.237239321828949 0.226569437371310 0.237636678560576 0.243061903516834 0.235990437756407 3 3 - 23236727 23237555 23237063.727 23236567 23238487 - gene protein_coding_gene FALSE TRUE AT3G62800.1|AT3G62800.2 DRB4 (double-stranded RNA-binding domain (DsRBD)-containing protein 4); double-stranded RNA binding Encodes a nuclear dsRNA-binding protein that interacts specifically with DCL4. May regulate DCL4 function and thereby affect miRNA biogenesis. similar to DRB3 (DSRNA-BINDING PROTEIN 3), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT3G26932.2); similar to Os10g0480500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064874.1); similar to double-stranded RNA-binding (DsRBD) domain-containing protein [Musa acuminata] (GB:ABF69992.1); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.160706519247313 -1.86668749588907 0.097151190036094 1 2.28289964126450 11.6965928330688 -0.160706519247313 0.077135467846174
AT4G11860_at 7.74706138330417 7.91909093873726 8.1007001164875 7.86639500517492 8.68104897602662 8.17652182661345 8.02556692692379 8.01387678836837 7.63884424611866 7.90281618187404 7.06049637535079 7.22587562676116 7.25932000336196 7.1448701682817 6.86432616569945 7.72511898957572 6.97796648135311 7.01669393494357 7.86226495729987 0.167164192839616 0.181591876952395 0.16638914695239 0.173094268817728 0.171487966174163 0.168689013175394 0.178157127874359 0.175108640718584 0.176244927809085 0.174656589154577 0.172743830468837 0.167270714993813 0.168575564958931 0.182493260826514 0.192029201527043 0.168676024748662 0.194985967892728 0.174854573894028 0.170181387694335 4 0|4 /|- 7134258 7135505 7134826 7134078 7138497 - gene protein_coding_gene FALSE TRUE AT4G11860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22960.1); similar to hypothetical protein LOC505719 [Bos taurus] (GB:NP_001039389.1); similar to Os06g0712400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058557.1); contains InterPro domain Protein of unknown function DUF544; (InterPro:IPR007518) -0.181103760928019 -1.86638650833890 0.0971968347141997 1 2.28249330248404 15.5466037101696 -0.181103760928019 0.10078519346403
AT2G43430_at 7.97056976070478 8.20717024101015 8.09254571431616 8.48623945149578 8.83048603171204 8.32287744274433 7.97974260876968 8.1170222623147 7.76211968762562 7.41738989912136 7.81165807758485 7.18286822574072 8.03488583123061 7.92734848150248 6.98902987736481 7.82536534372107 7.06847357768392 7.26800925579386 7.25187112824218 0.168804794532894 0.165521707261054 0.17148470599293 0.165521707261054 0.169670263842229 0.172579590481338 0.167121540118206 0.166685545487636 0.175169151401191 0.171411053599336 0.165521707261054 0.165521707261054 0.165521707261054 0.169011877103457 0.170938642988336 0.166845693385874 0.183303749442324 0.171016475153419 0.170032793381883 2 2|0 -|/ 18042693 18043813 18043235.125 18042446 18045332 - gene protein_coding_gene FALSE TRUE AT2G43430.1|AT2G43430.2 GLX2-1 (GLYOXALASE 2-1); hydroxyacylglutathione hydrolase glyoxalase II mitochondrial isozyme (Glx2-1) mRNA, nuclear Identical to Hydroxyacylglutathione hydrolase 1, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLX2-1) [Arabidopsis Thaliana] (GB:O24495;GB:O22857;GB:O24494); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.2); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|Identical to Hydroxyacylglutathione hydrolase 1, mitochondrial precursor (EC 3.1.2.6) (Glyoxalase II) (Glx II) (GLX2-1) [Arabidopsis Thaliana] (GB:O24495;GB:O22857;GB:O24494); similar to GLX2-4 (GLYOXALASE 2-4), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT1G06130.1); similar to putative mitochondrial glyoxalase II [Cicer arietinum] (GB:CAC10212.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.200369435349327 1.86594969303997 0.097263113719699 1 2.28190363609525 15.7461225585455 0.200369435349327 0.12082719864169
AT3G02060_at 6.44992331654766 6.9530672903421 6.79852378002343 6.54348129291045 7.20486664437411 6.54695056985718 7.81080782904076 7.49810198304971 4.33386441295698 5.65998123805671 4.77217853327371 5.02003954882969 5.23585752984128 5.3404634694592 4.96363466540283 5.88602457071493 5.89069292986192 4.43301257471244 5.81551347073238 0.287100419358794 0.287624721601036 0.287041007322783 0.279219638072163 0.279219638072163 0.287934565512746 0.286573434525128 0.284355724197258 0.296565017452593 0.279219638072163 0.293775249115471 0.279219638072163 0.281474382660212 0.286233839889111 0.283668471493388 0.279219638072163 0.295412279610888 0.301924733544378 0.281840474395682 3 3|0 +|/ 357347 358286 357906.4 354367 358840 + gene protein_coding_gene FALSE TRUE AT3G02060.1|AT3G02060.2 DEAD/DEAH box helicase, putative similar to ATP-dependent DNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G01440.1); similar to DEAD/DEAH box helicase [Medicago truncatula] (GB:ABD33152.1); similar to CarD-like transcriptional regulator family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94063.2); similar to CarD-like transcriptional regulator family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94062.2); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Transcription factor CarD; (InterPro:IPR003711); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.24078396455356 -1.86410367783071 0.0975436862999082 1 2.27941221526156 12.2069775141069 -0.24078396455356 0.159439520534422
AT2G16280_at 9.32231801710374 9.57691254015693 8.98048344751534 9.088786544622 9.61295992696485 9.45300817071155 10.0112050505814 10.1363531530337 10.2588150044575 10.0122483168749 10.9893821562120 10.4005847882828 10.6911714165969 10.6888516396309 10.2407914273018 10.2415531563924 9.69521651663899 9.97685311217313 10.2763509821956 0.124620032105319 0.117547424085108 0.12055155735672 0.124096374900250 0.117979571944792 0.118086927750438 0.115044322257736 0.119615892233879 0.121207329857574 0.117051968259727 0.115380778160716 0.112392369073523 0.113898932067582 0.118847482324440 0.120064698841977 0.114411531055886 0.117421178749180 0.117448986067563 0.116737688185964 2 2 + 7059210 7059781 7059536.364 7058026 7059979 + gene protein_coding_gene FALSE TRUE AT2G16280.1 very-long-chain fatty acid condensing enzyme, putative Identical to Probable 3-ketoacyl-CoA synthase 9 (EC 2.3.1.-) (KCS-9) (Very-long- chain fatty acid condensing enzyme 9) (VLCFA condensing enzyme 9) (KCS9) [Arabidopsis Thaliana] (GB:Q9SIX1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT2G26640.1); similar to KCS2 (3-ketoacyl-CoA synthase 2), acyltransferase [Arabidopsis thaliana] (TAIR:AT4G34510.1); similar to beta-ketoacyl-CoA-synthase [Marchantia polymorpha] (GB:AAO48425.1); similar to Chalcone and stilbene synthases, N-terminal [Medicago truncatula] (GB:ABE82745.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) -0.147404287810626 -1.86329934448786 0.097666174766347 1 2.27832695130765 19.7967643369177 -0.147404287810626 0.0593944541529841
AT2G19760_at 8.80101982716574 9.13590015547174 9.2835054723811 9.26628683926114 9.47125006532085 9.01504407507015 9.50030525389698 9.34910543020057 9.58842209012763 9.31194458281164 10.0380626626930 10.2165548587432 9.51769314328593 9.37732174803665 9.97696714702526 9.7324295118447 9.34505041742384 9.80067448322339 9.45063098172028 0.138475573877949 0.14300719502676 0.143719677512249 0.137023664824695 0.139274493391231 0.144120987428751 0.134781625732681 0.140001108111943 0.142265424443624 0.137547337409278 0.138953857636927 0.138678680054187 0.140162868010311 0.14948584168902 0.133055235765938 0.135927938023437 0.137869298700129 0.139363309445750 0.134141074467982 2 2|0 -|/ 8524175 8525111 8524515.625 8523869 8525249 - gene protein_coding_gene FALSE TRUE AT2G19760.1 PFN1/PRF1 (PROFILIN 1); actin binding first member of the Arabidopsis profilin multigene family, expressed in all organs of Arabidopsis. Binds poly-L-proline. The first intron of PRF1 enhances gene expression in vegetative tissues. Identical to Profilin-1 (Allergen Ara t 8) (PRO1) [Arabidopsis Thaliana] (GB:Q42449); similar to PFN2/PRF2/PRO2 (PROFILIN 2), actin binding / protein binding [Arabidopsis thaliana] (TAIR:AT4G29350.1); similar to profilin-like protein [Solanum tuberosum] (GB:ABB16985.1); similar to Profilin (Allergen Fra a 4) (GB:P0C0Y3); contains InterPro domain Plant profilin; (InterPro:IPR005455); contains InterPro domain Profilin/allergen; (InterPro:IPR002097) 0.181350320652927 1.86294170747697 0.097720684470108 1 2.27784445683555 18.8282655388899 0.181350320652927 0.101414552371381
AT1G16710_at 7.02771546902614 7.41078001388492 6.93939655487125 6.77410172905266 7.64640284947463 7.63703552755577 6.38918818098021 6.38135269176337 5.88631370975051 6.28926949458156 5.9027583429079 6.02045969138671 6.25390127781621 6.0403568671601 5.38911444271092 6.23536993997985 6.28830219487341 5.79986976561018 6.19998641477884 0.231356414419934 0.220859249669556 0.222675394545411 0.222153771702074 0.217848688578325 0.216523600945308 0.220277432845129 0.223225711925202 0.228648283597175 0.225289569487592 0.220892963451733 0.232353335295777 0.222595337053016 0.226595174253284 0.222807231387907 0.219364812414627 0.216523600945308 0.232817994732461 0.232535411338495 1 1|0 +|/ 5720807 5721744 5721165.9 5714685 5722359 + gene protein_coding_gene FALSE TRUE AT1G16710.1 TAZ zinc finger family protein / zinc finger (ZZ type) family protein Identical to Histone acetyltransferase HAC12 (EC 2.3.1.48) (HAC12) [Arabidopsis Thaliana] (GB:Q9FWQ5); similar to histone acetyltransferase 5 (HAC5) [Arabidopsis thaliana] (TAIR:AT3G12980.1); similar to HAC1 (P300/CBP acetyltransferase-related protein 2 gene), transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G79000.1); similar to histone acetyltransferase 4 (HAC4) [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) 0.156525884296802 1.86249469755217 0.0977888565098005 1 2.27724143533955 13.0839748462474 0.156525884296802 0.0722303645407143
AT3G15360_at 12.2364823209757 12.2452258200713 12.2672929482752 12.2110488475752 12.2258703329334 12.2783831998350 12.4076008337281 12.4351990940723 12.3147398440800 12.2568330387282 12.7094019652141 12.5583611233432 12.5098502932320 12.5178784383200 12.5444615193171 12.6156705012804 12.3732730204295 12.5865811639003 12.0639118154789 0.0749230736700732 0.0764435755062686 0.0768308125987114 0.0788253221800813 0.076726253339052 0.0759610870870116 0.0774892027054518 0.080058077383925 0.082351446720786 0.0741719345827398 0.076612960148398 0.0756074507110206 0.0760705133802441 0.0758802228460574 0.0800150526300157 0.0765880936237994 0.0903562662970252 0.0782632662635268 0.0767349945273832 3 3|0 +|/ 5188494 5189354 5188856.4 5188381 5189704 + gene protein_coding_gene FALSE TRUE AT3G15360.1 ATHM4 (Arabidopsis thioredoxin M-type 4); thiol-disulfide exchange intermediate encodes a prokaryotic thioredoxin Identical to Thioredoxin M-type 4, chloroplast precursor (TRX-M4) [Arabidopsis Thaliana] (GB:Q9SEU6;GB:Q9LDP6); similar to ATHM2 (Arabidopsis thioredoxin M-type 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT4G03520.1); similar to putative thioredoxin m2 [Pisum sativum] (GB:CAC69854.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) 0.127314167655026 1.86209207662197 0.097850297415425 1 2.27669834037577 24.6702694176293 0.127314167655026 0.0142274856177065
AT4G22756_at 4.640042508749 5.22673832396173 4.63828533781951 4.7193826221524 5.47266059610246 4.83841590038255 6.0402235507291 6.31098898004712 5.33711367622212 5.95839297692439 5.74059353932757 6.47441982901951 5.53996668020166 5.92589843638847 6.6182802496585 5.74430694619725 5.18926296877426 6.02987739247439 5.94492144533332 0.236439359937962 0.237974092520123 0.241135338228128 0.238674169664701 0.238248822168045 0.246998908536683 0.234739431232260 0.238737219252306 0.251158734284401 0.242860123896234 0.236146873941755 0.23432628951198 0.241485226719167 0.247977845546847 0.239990500825325 0.233154779120786 0.247447735544991 0.237911358453352 0.259338417851347 4 4 - 11955363 11956173 11955782.182 11954854 11956824 - gene protein_coding_gene FALSE TRUE AT4G22756.1 SMO1-2 (STEROL C4-METHYL OXIDASE); catalytic Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase. similar to SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1), catalytic [Arabidopsis thaliana] (TAIR:AT4G12110.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABE87434.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) -0.238147918831126 -1.86166169455363 0.0979160150946336 1 2.27611784592111 11.0631597882006 -0.238147918831126 0.157315065947855
AT3G46790_at 4.76183792418006 5.19489977979056 5.20844450845292 5.2569923888212 5.14521003291013 4.51866599289626 5.05584437554235 5.05167395399069 3.85933580253618 5.40147677807575 4.51819172466029 4.58154887017525 4.50937661193765 4.30465159098372 4.32848448540591 4.84880194036256 3.78025263867189 4.36970827642674 5.27067315649068 0.24590207914751 0.250983017932174 0.250381209845061 0.251440139537979 0.242685270698939 0.264387296730624 0.243691159312368 0.245212110447756 0.253428086953071 0.244698880902544 0.247099384713847 0.243712381376744 0.244701250753586 0.252457463243196 0.247361097867315 0.243372687499619 0.269263240222531 0.261546255258992 0.254667152865729 3 3 - 17242995 17243502 17243272.545 17242758 17244987 - gene protein_coding_gene FALSE TRUE AT3G46790.1 CRR2 (CHLORORESPIRATORY REDUCTION 2); binding Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-H subfamily) with 9 pentatricopeptide (PPR) repeats. The protein is involved the intergenic processing of chloroplast RNA between rps7 and ndhB, which is essential for ndhB translation. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G57430.1); similar to Os01g0848300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044803.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABD33343.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.211218669655999 -1.86071358791998 0.0980609345512826 1 2.27483922370657 9.64867391775412 -0.211218669655999 0.132075325538746
AT2G30600_at 8.94034275266708 8.86372840898638 8.22320143147012 7.9397531639396 9.62874294770286 9.06382993941244 8.16105170534676 7.65719702248361 9.29326797150126 8.32493294913395 9.8551232222702 9.1167687008713 8.90500276869592 9.20682666571708 8.87689893384115 8.23869038275873 7.94784196750541 9.04510056957312 8.68408412403184 0.122612091934238 0.122816414175656 0.12606096800435 0.123294579731370 0.123200854600636 0.127938265443246 0.122436715122695 0.135286376349075 0.127069081535834 0.128797954785474 0.121346788602405 0.120322573734805 0.121191305096342 0.121429115016185 0.121744444284207 0.120858563548070 0.133462584286404 0.121336835944767 0.125046178919059 2 2|0 +|/ 13045989 13048520 13047538.4 13043953 13048761 + gene protein_coding_gene FALSE TRUE AT2G30600.1|AT2G30600.2|AT2G30600.3|AT2G30600.4 BTB/POZ domain-containing protein|protein binding similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46260.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV43802.1); contains InterPro domain BTB/Kelch-associated; (InterPro:IPR011705); contains InterPro domain Coagulation factor 5/8 type, C-terminal; (InterPro:IPR000421); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.219952600721034 1.86026600292053 0.0981294189882115 1 2.27423569083026 17.3929609213143 0.219952600721034 0.140505992732786
AT4G30110_at 6.86907514031749 6.86425169977808 8.59955494605376 8.58074382503906 8.37524987957461 8.10836418557066 8.86726473409196 8.83698126527254 9.08181877891733 9.36723529094245 8.9529279918559 8.93000389567198 8.75047582443554 9.1197814942854 8.37371614422979 9.18235344476179 9.00052358882117 9.141679279229 9.17884422330414 0.158100330929311 0.164799773465418 0.150238017141905 0.141300294390253 0.148111977283225 0.157305823479536 0.154540556471020 0.147777247056008 0.155941939591404 0.142001877668731 0.142170238622820 0.141300294390253 0.141300294390253 0.149228882142950 0.146504917176450 0.144179806445402 0.149529649988586 0.144291566594362 0.142618530680183 4 4 - 14720287 14720817 14720501.091 14720257 14724584 - gene protein_coding_gene FALSE TRUE AT4G30110.1 HMA2 (Heavy metal ATPase 2); cadmium-transporting ATPase encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc Identical to Putative cadmium/zinc-transporting ATPase 3 (EC 3.6.3.3) (EC 3.6.3.5) (HMA2) [Arabidopsis Thaliana] (GB:Q9SZW4); similar to HMA3 (Heavy metal ATPase 3), ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT4G30120.1); similar to HMA4 (Heavy metal ATPase 4), cadmium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT2G19110.1); similar to Cadmium/zinc-transporting ATPase 4 (GB:Q9SZW5); similar to putative heavy metal transporting P-type ATPase [Thlaspi caerulescens] (GB:CAD98808.1); similar to P1B-type heavy metal transporting ATPase [Thlaspi caerulescens] (GB:AAS89468.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Heavy metal translocating P-type ATPase; (InterPro:IPR006416); contains InterPro domain Heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase; (InterPro:IPR006404); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.139359138025592 1.86017377036789 0.0981435369957863 1 2.27411132916041 17.2080517789453 0.139359138025592 0.0466035232875978
AT2G20270_at 7.55832249669995 7.61477785735019 7.21001839348664 6.84170350912039 7.50763411580243 7.22777603264711 7.89206828681319 7.72599612553859 6.06594826418986 6.34996587874697 7.20839386808554 7.60254721612046 6.21315442166842 7.169655917585 7.90399879281592 6.53551094663676 5.9550064019284 6.68208066549591 5.80559089450262 0.202711469870970 0.202454174561204 0.204865836683975 0.209719378395440 0.195906844952642 0.206446564393434 0.197452995941644 0.206363470857185 0.203477452826149 0.209569550878195 0.195906844952642 0.195906844952642 0.197633389316569 0.201710015413981 0.202554682323888 0.195906844952642 0.225445586430542 0.205868682163181 0.205647256907203 2 2|0 -|/ 8745508 8746671 8746425.444 8744786 8746758 - gene protein_coding_gene FALSE TRUE AT2G20270.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S12, chloroplast precursor (AtGrxS12) (GRXS12) [Arabidopsis Thaliana] (GB:Q8LBS4;GB:Q9SK75); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G28730.1); similar to glutaredoxin protein family-like [Oryza sativa (japonica cultivar-group)] (GB:BAC56010.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin, eukaryotic and viruses; (InterPro:IPR011899); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.166975168737951 1.85885739998909 0.0983452427346234 1 2.27233664901916 13.9386013728182 0.166975168737951 0.0856128499495662
AT4G21280_at 12.5735168908220 12.4999915908714 12.1153116499435 12.1462839816814 12.5220895998975 12.1493336380817 13.1155950712189 13.0563502630530 13.3192362760853 13.0604299570461 13.5315235757851 13.6198257569062 13.1770070500879 13.2776463333451 13.6037329459144 13.4842098166769 13.0979349511327 13.3514407331830 12.9776240197950 0.0770176558549787 0.0767072994284472 0.0823929562581464 0.0788130077873118 0.0767499236592896 0.0828750932741129 0.0773058155457344 0.0754157305944446 0.0811719695880231 0.0754157305944446 0.0765666034485221 0.0754157305944446 0.0769088490368808 0.078170453052365 0.0783134636382929 0.0760496408445821 0.0786375658965243 0.0790069362818978 0.075968896435834 4 4|0 +|/ 11334540 11335555 11335000.6 11334412 11335783 + gene protein_coding_gene FALSE TRUE AT4G21280.1|AT4G21280.2 PSBQ/PSBQ-1/PSBQA; calcium ion binding Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. Identical to Oxygen-evolving enhancer protein 3-1, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (PSBQ1) [Arabidopsis Thaliana] (GB:Q9XFT3;GB:O49568); similar to PSBQ/PSBQ-2 (photosystem II subunit Q-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G05180.1); similar to Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (GB:P12301); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797); contains InterPro domain Twin-arginine translocation pathway signal; (InterPro:IPR006311) -0.152145171093408 -1.85863787285625 0.0983789186868138 1 2.27204073581557 25.7783150338733 -0.152145171093408 0.066760131262278
AT3G15630_at 7.61645333539739 8.11030118452716 4.07549178119028 4.72597912217359 7.99136443678058 7.8788152177167 3.09896052432795 3.57150994954654 5.55517114864401 4.01529679126474 5.21517698441964 5.47810173028496 4.37390875551376 4.30925998855254 4.40759075079139 4.24243580053839 4.03757160404026 4.30537445782721 4.30183214059557 0.273646286823862 0.267876305724623 0.256180657976175 0.256259844294121 0.272469452782207 0.276551432312875 0.255716982803769 0.257596815949606 0.259584465713853 0.259586473757999 0.256281986038185 0.253638353940039 0.255474696561605 0.258454920881116 0.258459719947948 0.251501482725671 0.259541273579652 0.257087287243717 0.251501482725671 3 3 - 5297199 5297452 5297328.909 5296854 5297606 - gene protein_coding_gene FALSE TRUE AT3G15630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52720.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92597.1) 0.245341936588384 1.85690000521604 0.0986458962952625 1 2.26969861796435 10.4687482118729 0.245341936588384 0.164446533039645
AT1G03280_at 7.88915112611406 7.91885414778844 8.12168337015019 8.04622016470538 8.24296649624694 8.20198585104331 7.44367216739244 7.76248707526335 7.78924846651988 8.10017896342581 7.76323252346926 7.66800516646787 8.27912177677396 7.87102635814394 7.62432430677589 8.27656103626447 7.60075849755917 7.76499272844122 8.00466171397646 0.176796728922475 0.18762905831564 0.179146232011832 0.185065740719872 0.178877017172395 0.190821359333775 0.182678053118478 0.181096866130228 0.184533639773137 0.188595373462762 0.178835132090689 0.182730295913748 0.182724782072665 0.180017586821848 0.172505385156704 0.175771080984569 0.188223673656745 0.177168573189311 0.177071081420725 1 1|0 +|/ 805600 806732 806188.3 803035 807066 + gene protein_coding_gene FALSE TRUE AT1G03280.1 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein similar to transcription initiation factor [Arabidopsis thaliana] (TAIR:AT4G20340.1); similar to Os08g0343300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061594.1); similar to transcription initiation factor IIE, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA91357.1); contains InterPro domain Transcription factor TFIIE, alpha subunit; (InterPro:IPR002853); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.145489629663238 1.85586843233626 0.0988046939100024 1 2.26830875251673 15.8637271401102 0.145489629663238 0.0573694673666495
AT1G67230_at 8.02182529172205 8.19490651850118 7.90198149558528 8.1277582221516 8.38610743373544 8.36394148490183 8.3345341307185 8.33006975778405 7.90526557316612 8.2883068720656 8.26066598463488 7.9791910502388 8.03183688595335 7.87933699899358 7.843444947739 8.2117562059212 7.92540508220328 7.6609292658028 8.49547402045418 0.135579899069111 0.139770213735568 0.144800458591631 0.133606424171220 0.131081475649000 0.134887949423824 0.131587178789943 0.140594706929546 0.145187039004695 0.137503707145396 0.142239310376654 0.137686944056463 0.135837169648985 0.136818589622406 0.141437766817328 0.136956539217599 0.134785995385560 0.156451395194161 0.133928967911227 1 1 - 25155225 25156005 25155557.545 25154914 25159984 - gene protein_coding_gene FALSE TRUE AT1G67230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G68790.1); similar to nuclear matrix constituent protein-related [Arabidopsis thaliana] (TAIR:AT1G13220.2); similar to nuclear matrix constituent protein 1 (NMCP1) [Daucus carota] (GB:BAA20407.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.140499059065340 -1.85448672337404 0.0990177689007044 1 2.26644758582206 16.3095170208447 -0.140499059065340 0.0493868726287685
AT4G37460_at 8.04718016964774 8.71981053675143 8.53418147648973 8.53566152602 9.31083916861878 8.3759482320544 9.05785191356358 8.89842538867147 8.64287260072927 8.99127881102419 8.57439940991183 8.5282142964564 8.64820093338949 8.47324533456566 7.79235677928807 8.75779781112677 7.78876426745269 8.0395448909247 9.08503729536014 0.191121033957805 0.187182799319060 0.194521855528779 0.204281656645003 0.187182799319060 0.199295746128420 0.192714126088882 0.187182799319060 0.206496033851681 0.188431901942190 0.187280030703618 0.187182799319060 0.187275709664631 0.196271779889461 0.195094593164744 0.187182799319060 0.213894211805909 0.215492163324876 0.191161110397958 4 4|0 -|/ 17608618 17609493 17608997.9 17608371 17615770 - gene protein_coding_gene FALSE TRUE AT4G37460.1 tetratricopeptide repeat (TPR)-containing protein similar to SEC (SECRET AGENT), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G04240.1); similar to Os07g0113700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058749.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85771.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.286370085838957 -1.8539684150072 0.0990978097309957 1 2.26574955472692 17.3008431520241 -0.286370085838957 0.201210686740975
AT3G06310_at 7.18847853265005 7.2761699127128 7.08007898253033 6.85002814952434 6.72988567748314 6.74402234831665 6.95371979790702 7.0912615668869 6.28188649100295 6.17759102035166 6.6461323994432 7.19001254278993 6.45142343271493 7.05126986713881 7.13230916991543 7.06814688477537 6.47276251075566 6.42657828178303 6.28588912940553 0.164620482348261 0.163720303526277 0.163271314844624 0.160086676815585 0.160001729174982 0.164864083759045 0.160001729174982 0.166217672855489 0.164639031920298 0.163244587827496 0.168481269493751 0.160638464453050 0.162584892777088 0.171873720480391 0.167309735987937 0.162668139416359 0.168126996072565 0.165775973632755 0.160001729174982 3 3|0 -|/ 1913304 1914149 1913774.9 1912974 1914398 - gene protein_coding_gene FALSE TRUE AT3G06310.1 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein similar to NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein [Arabidopsis thaliana] (TAIR:AT5G18800.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96885.1); contains InterPro domain CHCH; (InterPro:IPR010625) 0.139985088084460 1.85164699863790 0.0994570494231982 1 2.26262407636916 13.5158480875437 0.139985088084460 0.0488648113094664
AT1G54340_at 7.1505902625462 6.91021147973523 7.22147059459936 7.24948123317313 6.9079048453546 7.28788518476531 6.58561285956921 6.07584918462454 6.09151988143997 5.97584486821775 5.85970357368933 5.9217363742983 5.82661452378001 6.01009762628507 5.96918852321038 5.70094283096069 6.64354613429445 5.74792893129056 6.09648230215618 0.172843878605959 0.179440322771965 0.174179943766954 0.173442114744413 0.177721937008417 0.171417683024627 0.181460335352122 0.189705197271923 0.190310060035412 0.182199360531608 0.184251245884354 0.175119278746325 0.178269270463168 0.173074834580065 0.182547695570096 0.171974367122564 0.174330317279636 0.177346582667126 0.174096037166050 1 1|0 +|/ 20289086 20289951 20289605.667 20287147 20290453 + gene protein_coding_gene FALSE TRUE AT1G54340.1 ICDH (ICDH); isocitrate dehydrogenase (NADP+) NADP-specific isocitrate dehydrogenase (ICDH) similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G14590.1); similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT1G65930.1); similar to NADP-isocitrate dehydrogenase [Citrus limon] (GB:AAD51361.1); similar to NADP specific isocitrate dehydrogenase [Daucus carota] (GB:BAA34112.1); similar to isocitrate dehydrogenase (NADP+) [Apium graveolens] (GB:CAA73139.1); contains InterPro domain Isocitrate dehydrogenase NADP-dependent, eukaryotic; (InterPro:IPR004790); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.195736824321218 1.85127870038330 0.099514156545533 1 2.26212834514049 12.9309184548780 0.195736824321218 0.117729409292026
AT1G74800_at 5.41866003745093 5.655617381051 4.79365021592998 5.20107469776904 5.4483250641385 5.38330859287671 5.19221463565426 5.38334113416185 5.42264382249578 5.14228535404251 5.2230537370874 5.65966040510444 4.94062377442731 5.34133750168421 5.29324806299832 5.22927885258176 5.03316748180256 4.56090955118358 5.31124870253572 0.205310402529592 0.204551228770776 0.22022080217046 0.209601007142019 0.204938823806732 0.209870017191622 0.216783215379368 0.207639613531079 0.216962174587686 0.216998020133206 0.208736665661084 0.208217602284186 0.208322586263282 0.209576311589104 0.207010710017579 0.204736008597658 0.204551228770776 0.221543470162186 0.215391991042673 1 1|0 -|/ 28105944 28106750 28106285.3 28105629 28108773 - gene protein_coding_gene FALSE TRUE AT1G74800.1 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G21060.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT5G62620.1); similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G27120.1); similar to galactosyltransferase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83183.1); similar to galactosyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99414.1); similar to Glycosyl transferase, family 31; Ar (GB:ABE93312.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) -0.168884013283462 -1.85064622342413 0.099612298583264 1 2.26127711348481 10.5356335768207 -0.168884013283462 0.088731654018294
AT1G52730_at 7.9005560096207 8.17744552617007 7.63194763245016 7.82333691244378 8.2070327865201 7.61185025666289 8.17275459231195 8.10481581872014 8.18120478358615 7.97708903380237 8.18517865055496 8.37493192530342 8.06286671379347 8.13256957779978 7.60385658952035 7.99100739894529 7.329695164067 7.75159674160679 7.99805898221124 0.199919723268245 0.193065756435449 0.207100124394256 0.197602486701698 0.203765034759700 0.200762677205458 0.196223090258604 0.195316027199670 0.187778249082210 0.190480891262273 0.212781997113036 0.188965200445237 0.187778249082210 0.19844787473735 0.203012549099760 0.193512438367556 0.202086740421176 0.200892446036394 0.193552926500717 1 1|0 +|/ 19647842 19648509 19648248.667 19646158 19648802 + gene protein_coding_gene FALSE TRUE AT1G52730.1|AT1G52730.2 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G15610.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.196752922177092 -1.84989407809013 0.0997291286019513 1 2.26026496439759 15.9442576643952 -0.196752922177092 0.118912051591623
AT2G24090_at 9.72433388250173 10.0485685894625 8.92686842538249 8.8855359382339 10.0969580106086 9.15084660393586 10.4255812677178 10.3467782026371 10.0453529264583 10.0691724813250 10.6106147884369 11.0134451733994 10.1683487674939 10.3186228688283 11.0201248620984 10.5511755375998 9.13687535852389 10.0594688256573 9.87895039160367 0.128143724225061 0.120949271239357 0.137378078923426 0.134533755428218 0.125722789010966 0.139785180831205 0.127837403554258 0.124276415936954 0.133111488539886 0.121567672960604 0.120949271239357 0.123127162575953 0.125973368553446 0.130001727703477 0.123033817510360 0.123297570140786 0.133536363418292 0.133791873436778 0.121715683015302 2 2|0 +|/ 10249125 10249709 10249283.9 10249044 10250694 + gene protein_coding_gene FALSE TRUE AT2G24090.1 ribosomal protein L35 family protein similar to 50S ribosomal protein L35, chloroplast precursor (CL35) (GB:P23326); contains InterPro domain Ribosomal protein L35; (InterPro:IPR001706) -0.254626992373583 -1.84935113514895 0.0998135437742722 1 2.25953443043414 19.8795137596685 -0.254626992373583 0.173760432996364
AT1G21440_at 10.0998084006763 10.1676576317332 9.68022872635523 9.5924741873149 10.2294931671319 9.9754597403019 10.1727825259277 10.1420506111905 9.00395594974818 10.5690905056312 10.5045753806997 10.1928445286875 10.047342645412 10.3454514309733 9.77607789583383 10.2098382766458 10.3872502371968 10.758486204742 9.59519730403623 0.105475258796213 0.101742580710365 0.108805269927897 0.108534395718608 0.104094725101157 0.107641736739071 0.105057362498577 0.103272041267143 0.123436101380846 0.103038511970045 0.101581635547436 0.101581635547436 0.104912162908038 0.108051421341313 0.109115472230161 0.103775992452988 0.102394235670365 0.107749463745043 0.112612295699598 1 1 - 7502341 7502842 7502663.4 7502148 7504164 - gene protein_coding_gene FALSE TRUE AT1G21440.1 mutase family protein similar to mutase family protein [Arabidopsis thaliana] (TAIR:AT1G77060.1); similar to Carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96021.1); contains InterPro domain Isocitrate lyase and phosphorylmutase; (InterPro:IPR000918); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.139412284056357 1.84857087215671 0.099934974867726 1 2.25848472021220 20.0077349962435 0.139412284056357 0.0482638908325877
AT4G35335_at 5.2413925536411 5.31365647613834 4.89639055757381 4.33752244408604 5.64190046497265 5.31328253497407 5.77474683507905 5.54513886656005 3.83043432399526 4.66502023960986 5.43889288493633 5.31897016645178 5.1519414202106 4.94761687329566 5.48275179726664 4.78170726906519 4.78149151408921 4.40128547645934 4.17062316265463 0.207329251283394 0.203069607242367 0.204003323833233 0.206828435143613 0.202688705200474 0.203371410922614 0.204686784006585 0.210608071145094 0.213428077097239 0.218375847432046 0.201600432751081 0.204941291543536 0.203989905172815 0.208599738444948 0.207316801319579 0.203703276821049 0.219381433406248 0.201600432751081 0.216064599505390 4 0|4 /|+ 16807556 16809788 16808690.727 16807270 16809828 + gene protein_coding_gene FALSE TRUE AT4G35335.1 nucleotide-sugar transporter family protein similar to nucleotide-sugar transporter [Arabidopsis thaliana] (TAIR:AT5G41760.2); similar to Os07g0573700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060069.1); similar to Os06g0523400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057753.1); similar to Predicted UDP-galactose transporter (ISS) [Ostreococcus tauri] (GB:CAL52633.1); contains InterPro domain Nucleotide-sugar transporter; (InterPro:IPR007271) 0.197298292007798 1.84791823780811 0.100036650373764 1 2.25760683916659 9.88805788361569 0.197298292007798 0.119678931022219
AT3G59990_at 9.00132625517418 9.24209616199311 9.28775430191922 9.34262088246618 9.70810066917767 9.28020401661247 9.40877708068827 9.10912970059549 8.7468330085434 8.4636953371066 8.83940715765996 8.66586017805557 8.75553464330665 8.75584694099197 8.37856041826594 8.86241601190111 8.88026183451309 8.82118552018714 8.59585837824362 0.147435394181269 0.138368467871474 0.143776799404256 0.149178854359326 0.141997351064997 0.148232784162693 0.141365931466471 0.138241829683641 0.142250553890343 0.154069392561004 0.139221253154943 0.145671108827746 0.148433292769693 0.155286621211420 0.146133553254422 0.139951092078358 0.158766272389042 0.142032488953768 0.147473806293833 3 3|0 -|/ 22166931 22167968 22167436.7 22166696 22169706 - gene protein_coding_gene FALSE TRUE AT3G59990.1|AT3G59990.2|AT3G59990.3 MAP2B (METHIONINE AMINOPEPTIDASE 2B); methionyl aminopeptidase Encodes a MAP2 like methionine aminopeptidase Identical to Methionine aminopeptidase 2B (EC 3.4.11.18) (MetAP 2B) (MAP 2B) (Peptidase M 2B) (MAP2B) [Arabidopsis Thaliana] (GB:Q56Y85;GB:Q8VZ89;GB:Q9FPV8;GB:Q9M1X7); similar to MAP2A (METHIONINE AMINOPEPTIDASE 2A), methionyl aminopeptidase [Arabidopsis thaliana] (TAIR:AT2G44180.1); similar to putative methionyl aminopeptidase (EC 3.4.11.18) F6E13.31 [Oryza sativa (japonica cultivar-group)] (GB:BAD03108.1); similar to Methionine aminopeptidase 2, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22101.1); similar to methionine aminopeptidase 2 [Ananas comosus] (GB:ABB91775.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 2; (InterPro:IPR002468); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714) 0.178546424038383 1.84748028199888 0.100104935304701 1 2.25701779442972 17.9710076316157 0.178546424038383 0.0999927439383104
AT1G01610_at 7.55388461771074 7.89519856276174 6.93174053913834 7.61561255251225 8.95069940835119 8.96175388327807 8.54208825660348 9.01686656061553 8.90230687704749 8.1607854567744 9.56307922997511 9.54964903209707 9.37944464826526 9.41292000961286 9.0964431691467 9.18228621147081 7.46175788445275 8.4537429862367 8.155325831718 0.194100515028895 0.182011202561476 0.213520683533686 0.204325845589705 0.178180976903835 0.189778178429731 0.187308797852867 0.179082483481328 0.185988071100311 0.183736118519896 0.181464708020753 0.178180976903835 0.183600801780177 0.189330358115247 0.185935861968473 0.178180976903835 0.216654818740499 0.181986472128332 0.178180976903835 1 1 - 222122 222729 222350.545 221691 224340 - gene protein_coding_gene FALSE TRUE AT1G01610.1 ATGPAT4/GPAT4 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 4); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a protein with glycerol-3-phosphate acyltransferase activity. Identical to Glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.15) (AtGPAT4) (GPAT4) [Arabidopsis Thaliana] (GB:Q9LMM0;GB:Q8W4N0); similar to ATGPAT6/GPAT6 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 6), 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase [Arabidopsis thaliana] (TAIR:AT2G38110.1); similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G00400.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE91390.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) 0.234609052145478 1.84745607322459 0.100108711156265 1 2.25698523546870 16.8927579400816 0.234609052145478 0.155721581142709
AT4G19985_at 6.47249070386366 6.35351229839562 6.02184206667643 6.02549164816311 6.33313202444066 6.02852725858741 7.26841266713947 7.24741172125853 6.96907146975207 7.13879250141254 7.69305618445043 7.74228121677276 7.04051970536157 7.73400929752669 7.77853970489875 7.55217661854175 6.34713078591973 7.35602627235393 6.77421066502816 0.226699469745246 0.220781305082903 0.223378368519160 0.218376619610733 0.22445121234722 0.235785656580892 0.227351886009584 0.220847950309351 0.251527374787038 0.218376619610733 0.223358970354746 0.226495158295833 0.218376619610733 0.224498858563202 0.224664060726151 0.227236014826209 0.246178155690763 0.234410701305493 0.223499417623193 4 4|0 -|/ 10830868 10831533 10831250.7 10830247 10832104 - gene protein_coding_gene FALSE TRUE AT4G19985.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to ATNSI (NUCLEAR SHUTTLE INTERACTING) [Arabidopsis thaliana] (TAIR:AT1G32070.3); similar to hypothetical protein 174 [Porphyra yezoensis] (GB:YP_536873.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.144216335183404 -1.84499694274782 0.100492963474616 1 2.25367872200979 13.6519320578785 -0.144216335183404 0.0567118599004452
AT3G46100_at 7.47264221250539 7.57716531633868 7.69625563567417 7.51164755401506 7.72696091184745 7.35064115904245 8.12823829768857 7.58703588380932 8.32032855441599 8.06059574514904 7.98250622995425 8.01242548020842 7.72484824298426 7.8885583500082 7.5304559095851 7.96146019311118 7.87739436288244 7.82320680306356 7.99226983435578 0.152040480117276 0.149008124758718 0.149797242045506 0.144976189594146 0.157297826638550 0.15972982981757 0.151837159519513 0.151998460084413 0.147041023119303 0.150975992578082 0.156505221190547 0.144907764178916 0.154518654685834 0.156501687441377 0.158392623867175 0.144404198771168 0.151410641851056 0.158190100199014 0.154119671511737 3 3|0 -|/ 16939453 16940060 16939781.7 16939279 16942018 - gene protein_coding_gene FALSE TRUE AT3G46100.1 ATHRS1 (HISTIDYL-TRNA SYNTHETASE 1); histidine-tRNA ligase histidyl-tRNA synthetase similar to ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G03406.1); similar to PREDICTED P0627E03.18 gene product [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL56871.1); similar to Os02g0754700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048157.1); contains InterPro domain Histidyl-tRNA synthetase, class IIa; (InterPro:IPR004516); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain tRNA synthetase, class II (G, H, P and S); (InterPro:IPR002314); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.197092605303149 -1.84454231692833 0.100564153398955 1 2.25306761865623 15.6185758669226 -0.197092605303149 0.119836054133286
AT4G14920_at 5.19548699889479 5.52478730357664 4.66342842710847 4.94386654662596 5.39118316498806 5.01889779558734 5.19237855085059 5.15157548885227 5.51025688518942 5.29313883266525 5.23030846306442 5.81140666246615 5.01234920186483 5.65484426757822 5.42899153243543 5.78246531389954 5.14910900720867 5.41497587340507 5.78210807074712 0.194891104885373 0.199725992396231 0.205106854382351 0.201944738597401 0.194803230685207 0.191537374304682 0.197957636853943 0.202813297245048 0.203122465482089 0.192668462401653 0.19086938243005 0.195038477655993 0.196115522192473 0.200682752582327 0.194902014199970 0.192125195506376 0.198665096831435 0.201755438264504 0.199424138470954 4 4|0 -|/ 8531158 8532061 8531472.5 8531153 8535838 - gene protein_coding_gene FALSE TRUE AT4G14920.1 PHD finger transcription factor, putative similar to DNA binding [Arabidopsis thaliana] (TAIR:AT1G05380.1); similar to PHD finger transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83629.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.177329037296543 -1.84408520210377 0.100635781030212 1 2.25245322645685 10.6172293111143 -0.177329037296543 0.0990116974140006
AT3G53740_at 9.3613070786914 9.61946685352177 9.11834730497703 9.23008861088541 9.62614150708392 9.2288716330081 9.56430732427195 9.82717411249798 9.56384576771965 9.65511525288294 9.6393796502062 9.88560703957085 9.58049816016353 9.59524839251064 9.77343565390908 9.32194035523753 9.02044465132332 9.60025092747176 9.60668658085343 0.12075960661115 0.117397071278705 0.126678449035464 0.122295676325429 0.125193320947027 0.123005924975344 0.124129166059654 0.117946143580113 0.121384152808402 0.118858148274584 0.121137435984582 0.126119535901067 0.120489461576201 0.125667597835812 0.122124941382316 0.122856269495842 0.125546453994899 0.120901065180933 0.123027572640222 3 3|0 -|/ 19924906 19925737 19925326.5 19924685 19925994 - gene protein_coding_gene FALSE TRUE AT3G53740.1|AT3G53740.2|AT3G53740.3|AT3G53740.4 60S ribosomal protein L36 (RPL36B)|structural constituent of ribosome Identical to 60S ribosomal protein L36-2 (RPL36B) [Arabidopsis Thaliana] (GB:Q9M352;GB:Q8L5U3); similar to 60S ribosomal protein L36 (RPL36A) [Arabidopsis thaliana] (TAIR:AT2G37600.2); similar to ribosomal protein L36 [Triticum aestivum] (GB:AAW50980.1); contains InterPro domain Ribosomal protein L36E; (InterPro:IPR000509) -0.174325087471692 -1.84336528762974 0.100748685628598 1 2.25148573004134 19.0272879552594 -0.174325087471692 0.095737695505784
AT1G73655_at 10.1977254826259 10.0606993664752 9.42201863866254 9.517807188291 9.9959990824846 9.55842977094038 10.3085341972895 10.0348114952234 10.1669312009118 10.1828549739058 10.4338757164245 10.4268939144279 9.88425004761192 10.4551038881528 10.5719742998074 10.2634403284689 9.64455324894834 10.086373922583 9.76679320011225 0.104960657731386 0.103874703977184 0.107591497908521 0.107047437470339 0.101754300411788 0.107012782289558 0.105981634902637 0.108216890864203 0.118739323995107 0.102406877790474 0.103703332828820 0.101101504183811 0.102309461232082 0.103515340503844 0.102674948719328 0.101811227108478 0.107844648639347 0.107832401030350 0.104099028231163 1 1 - 27694186 27695297 27694862.273 27694020 27695475 - gene protein_coding_gene FALSE TRUE AT1G73655.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT1G18170.1); similar to hypothetical protein MtrDRAFT_AC139526g24v1 [Medicago truncatula] (GB:ABE80155.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.172465293074525 -1.84097314142471 0.101124705685587 1 2.24827193200868 20.0168371339723 -0.172465293074525 0.0938879563012832
AT2G15240_at 6.55816833399493 7.55508078021158 6.77043048982248 6.83191685349656 8.10497578554267 7.42017176588026 7.02955625835089 7.05816296762494 5.92999280185157 5.04643533398873 5.85864180976486 6.02943240860509 6.07723086350401 6.39281661251433 5.48850311362198 5.674197279457 5.92141410563596 6.0731425175507 5.77266542796434 0.303460290145402 0.28535473468359 0.297658731599518 0.286630128900980 0.282957950292714 0.287609518773444 0.292652037451844 0.291121207550046 0.299037690476195 0.284688425974068 0.282957950292714 0.282957950292714 0.282957950292714 0.294050011989890 0.298006633204046 0.283655900538511 0.305665796662091 0.287956738448709 0.282957950292714 2 2|0 -|/ 6623222 6624545 6623808.444 6622607 6626056 - gene protein_coding_gene FALSE TRUE AT2G15240.1 UNC-50 family protein similar to Os09g0109500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062566.1); similar to hypothetical protein DDBDRAFT_0184329 [Dictyostelium discoideum AX4] (GB:XP_629704.1); contains InterPro domain UNC-50; (InterPro:IPR007881) 0.294011394768387 1.84093782738797 0.101130266575604 1 2.24822450009156 12.9272846677488 0.294011394768387 0.209631271685272
AT1G20910_at 4.75127338441266 5.60370461849753 4.96568156708815 5.38599072490711 5.5223794543287 5.42321013750476 5.45889842953943 5.63822684140775 4.87300866504263 5.17232348952485 4.71001636621345 4.78179199849940 4.86272428912816 4.4038254652922 4.73335170268702 4.96199793881011 4.57051006556611 4.39037762841834 5.35276110483476 0.252120607621434 0.254858280356075 0.254911631583178 0.260484660238229 0.252120607621434 0.259114700664929 0.255932380204854 0.253910219505775 0.261732978199775 0.253291893475169 0.252120607621434 0.252120607621434 0.252120607621434 0.261996515657534 0.252120607621434 0.255391676304825 0.266919117790529 0.257332901620235 0.256367276574513 1 1 - 7277205 7278486 7277777.111 7276932 7281127 - gene protein_coding_gene FALSE TRUE AT1G20910.1 ARID/BRIGHT DNA-binding domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76510.2); similar to AT-rich interaction re (GB:ABE82605.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -0.247291834407194 -1.84013000793259 0.101257552387970 1 2.24713957389731 10.2484317371912 -0.247291834407194 0.168254351892884
AT1G59750_at 6.04300556435994 6.01406192103151 6.29250907178877 5.78747941061786 6.96404646875015 6.54584118316064 6.12030534025177 6.10672658617647 5.26329130681843 5.90255283032125 5.62644422723605 6.21378131703503 5.87440729111988 6.15261199769157 5.92085315216749 5.80474289295805 5.47249230036857 5.34583376950727 6.07502642582613 0.179346601512104 0.179638323427637 0.174413348064389 0.180002605176465 0.187239329395648 0.184266131899083 0.187274943797142 0.17789005255306 0.184434563610035 0.182999765665599 0.18304337578685 0.183449849360937 0.174901812670662 0.180388257409746 0.179694683163337 0.180392566131215 0.195757563522549 0.183167990381061 0.187489598126385 1 1 + 21987030 21987823 21987255.636 21983049 21988098 + gene protein_coding_gene FALSE TRUE AT1G59750.1|AT1G59750.2|AT1G59750.3 ARF1 (AUXIN RESPONSE FACTOR 1); transcription factor Encodes a member of the auxin response factor family. ARFs bind to the cis element 5'-TGTCTC-3' ARFs mediate changes in gene expression in response to auxin. ARF's form heterodimers with IAA/AUX genes. ARF1 enhances mutant phenotypes of ARF2 and may act with ARF2 to control aspects of maturation and senescence. Identical to Auxin response factor 1 (ARF1) [Arabidopsis Thaliana] (GB:Q8L7G0;GB:O23664); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.1); similar to Os02g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047137.1); similar to Os04g0442000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052879.1); similar to auxin response factor 1 [Gossypium barbadense] (GB:AAZ81521.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.190441597406491 1.83893133606642 0.101446701994273 1 2.24553005153633 12.0084233046834 0.190441597406491 0.113607814878928
AT2G35940_at 8.5385218981383 8.64040765639327 8.71242824422719 8.8557076558695 8.80242619642645 8.7647473985067 8.68572762664201 8.89863994871508 7.69118597778194 8.04159905735078 7.69573970186577 7.77420250976788 8.14222578841119 8.23235735426937 7.11881315336837 8.66551702212418 8.59422778958124 7.90813708533809 7.76371927653493 0.139372825209953 0.139010910670915 0.13907847310326 0.152176783028386 0.133744601943624 0.13991086765428 0.136363795877447 0.138276407186251 0.142368831690082 0.137926465786588 0.142282616492117 0.141859053056938 0.137927297700638 0.146777613056527 0.146708890453229 0.136842405879212 0.145769102268935 0.135120906031091 0.144191736799382 2 2 - 15096260 15096678 15096458.909 15095911 15099494 - gene protein_coding_gene FALSE TRUE AT2G35940.1|AT2G35940.2|AT2G35940.3 BLH1 (BLH1); DNA binding / transcription factor|BLH1 (BLH1); transcription factor|BLH1 (BLH1) BEL1-like homeodomain 1 (BLH1) similar to BLH4 (BLH4), DNA binding [Arabidopsis thaliana] (TAIR:AT2G23760.3); similar to BEL1-like homeodomain transcription factor [Trifolium pratense] (GB:BAE71188.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.138618768993422 1.83832743443424 0.101542123354186 1 2.24471930956917 16.6616111553548 0.138618768993422 0.0482264091656344
AT1G32160_at 10.2963664451056 10.5634128468716 10.3425104736622 10.4315972456778 10.387560942074 10.3289329177062 10.6879203330757 10.7821940787801 10.8219769398889 10.6796282101178 10.8078342016349 10.6038792948223 10.6240521880083 10.8122265916653 10.4651815343109 10.9288350949832 10.6845863296090 10.5597016247971 10.7715824645699 0.074102001255531 0.0709148055296253 0.0799986965944046 0.0707359065925638 0.0724427465230075 0.0768813680234365 0.074499770124612 0.070477033496251 0.0808606971167681 0.0719614749217244 0.0701326494395511 0.070165336211982 0.070146938189905 0.0737433163746241 0.072421965186563 0.0704929637650373 0.0722114926541273 0.0725116745774345 0.0705168963145829 1 1 + 11569643 11570196 11569977.455 11568645 11570367 + gene protein_coding_gene FALSE TRUE AT1G32160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17800.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38836.1); similar to Os03g0717900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051084.1); similar to Os04g0595100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053731.1); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) -0.140882564279083 -1.83657496725017 0.10181950642056 1 2.24236718017047 21.1993200665380 -0.140882564279083 0.0523687025641553
AT4G18600_at 5.7327985767091 6.14664174426324 5.60169949428648 5.783931752958 6.46924101098692 6.0136272264627 5.25292729558943 5.57551224540546 5.13005052494178 5.70411525977188 5.47990320811135 6.24821571665094 5.84179118034665 5.44774102526508 4.78888657964471 5.76338462032936 6.06515915075076 5.56729639338747 5.78347821262644 0.210686487276435 0.215558940151934 0.220781877421814 0.216043962862931 0.222923850578059 0.21628026588992 0.22340205194894 0.214912924301083 0.245603360196685 0.217030866835639 0.216670163401872 0.210512896756629 0.210512896756629 0.215273157139409 0.234390895996784 0.214715651055968 0.226290755861509 0.22012555577525 0.210512896756629 4 4 - 10240212 10240703 10240482.091 10239892 10247383 - gene protein_coding_gene FALSE TRUE AT4G18600.1 WAVE5 (WASP (Wiskott-Aldrich syndrome protein)-family verprolin homologous protein 5) putative WAVE homolog Identical to Scar-like domain-containing protein [Arabidopsis Thaliana] (GB:Q5XPK0;GB:O49528); similar to WAVE2 (WASP (Wiskott-Aldrich syndrome protein)-family verprolin homologous protein 2) [Arabidopsis thaliana] (TAIR:AT1G29170.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79092.1); contains domain FAMILY NOT NAMED (PTHR12902); contains domain His-Me finger endonucleases (SSF54060) 0.200618737106238 1.83604228361736 0.101903961737262 1 2.24165239007806 11.4168033683781 0.200618737106238 0.124325020738787
AT4G17720_at 8.58014263691295 8.65858104448353 8.82182548939208 8.81653154074653 8.03985117072556 7.98597210443533 7.60540221732312 7.30187269967133 6.89746171973362 6.77844517782757 6.39003811150493 7.00490035932649 6.66416021868478 6.77070615599675 6.70612688153674 6.66516908973233 7.17016349178263 6.28245610893507 6.72888039536254 0.203034726536606 0.20859022599525 0.209620470323481 0.206691928420279 0.202077915209445 0.208905348895409 0.20351397935119 0.208546162541429 0.204329974091253 0.20768589103537 0.212440098401952 0.203281369877861 0.214051442280632 0.20629719876866 0.214083244399374 0.207478574417562 0.208346480534267 0.218882841156742 0.210470460917693 4 4 - 9862723 9863186 9862937.727 9862459 9864676 - gene protein_coding_gene FALSE TRUE AT4G17720.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G46870.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD65610.1); similar to RNA recognition motif (RRM)-containing protein [Brassica oleracea] (GB:ABD65158.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.142332357303349 1.83417359174092 0.102200759026091 1 2.23914547710611 14.980427771209 0.142332357303349 0.0550557934991696
AT1G10470_at 9.99319152913507 10.1574826515336 9.93278252730777 10.0376591381390 10.4191635236080 9.98231223462154 10.1255872056693 9.9477811097165 9.6611401619016 9.9389453408981 10.5137389487780 10.2226647984504 10.1446927657542 9.9298546323464 10.1960763563939 10.6267121904175 10.0890840697828 10.1182470848049 10.1995000402237 0.104164422968008 0.0977499954520738 0.103453548590902 0.101012269513659 0.0998461703486086 0.105242683813612 0.0985286269749242 0.0978035551396293 0.104030795704605 0.102810252409253 0.101246483852663 0.0974298150598623 0.102590709654704 0.0998655968555557 0.102587685840738 0.100826976995116 0.108070059563755 0.110775505353277 0.104655004455561 1 1|0 -|/ 3442650 3443466 3442974.8 3442328 3443958 - gene protein_coding_gene FALSE TRUE AT1G10470.1 ARR4 (RESPONSE REGULATOR 4); transcription regulator/ two-component response regulator Encodes a two-component response regulator. Acts redundantly with ARR3 in the control of circadian period in a cytokinin-independent manner. Identical to Two-component response regulator ARR4 (Response regulator 1) (ARR4) [Arabidopsis Thaliana] (GB:O82798); similar to ARR3 (RESPONSE REGULATOR 3), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT1G59940.1); similar to response regulator protein [Dianthus caryophyllus] (GB:AAK14395.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.166953703369326 1.83335224912278 0.102331467162996 1 2.23804392479536 20.1561595083907 0.166953703369326 0.0883163470458898
AT1G18500_at 7.89470891539264 8.07225528440784 7.66795741708584 7.68971381083656 8.13041110234845 7.85069658296342 7.57744364537819 7.21303607489143 7.55658056505578 8.04351452257525 8.05961873618086 8.15274892721803 7.83678042569115 7.67017115239955 8.03839053317884 8.3922345168812 7.99650911804988 7.9943379409026 7.90212705889522 0.152584951783139 0.156067029244288 0.160253693575150 0.154253207900339 0.155338059321447 0.155385877952247 0.155364737579825 0.153296231316904 0.155034189326073 0.149311847113162 0.155103124945084 0.151556286945125 0.151178351359162 0.158586799353172 0.156557902544087 0.153516670170040 0.154421537106324 0.150645651337385 0.153881968608400 1 1|0 +|/ 6371752 6372795 6372239.222 6369340 6373018 + gene protein_coding_gene FALSE TRUE AT1G18500.1 IPMS1/MAML-4 (METHYLTHIOALKYLMALATE SYNTHASE-LIKE 4); 2-isopropylmalate synthase Encodes an active Arabidopsis isopropylmalate synthase IPMS1. Involved in leucine biosynthesis. Do not participate in the chain elongation of glucosinolates. Expressed constitutively throughout the plant. Loss of IPMS1 can be compensated by a second isopropylmalate synthase gene IPMS2 (At1g74040). similar to IMS1, 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT1G74040.1); similar to 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A) (Alpha-IPM synthetase A) (GB:O04973); similar to 2-isopropylmalate synthase 1 [Brassica insularis] (GB:ABA26446.1); similar to Putative 2-isopropylmalate synthase [Brassica oleracea] (GB:AAW81741.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891); contains InterPro domain LeuA allosteric (dimerisation) domain; (InterPro:IPR013709); contains InterPro domain Bacterial 2-isopropylmalate synthase; (InterPro:IPR005671); contains InterPro domain Alpha-isopropylmalate/homocitrate synthase; (InterPro:IPR002034) 0.164429309130862 1.83329539678553 0.102340520444043 1 2.2379676836187 15.6878643379905 0.164429309130862 0.0853124641548669
AT1G30200_at 7.80099810349011 7.79778440046443 7.9036401467547 7.70239387335143 8.26738098927136 7.82755298502983 7.74342408629823 8.05125477737647 8.00322967896933 7.9169798405087 8.4790504394676 8.10193621088907 8.30259327081284 8.43842802865521 7.5898149358924 8.3538649926035 8.04672750750925 8.07787020480512 7.77299878631156 0.138590200465311 0.135080498195747 0.139741041300112 0.142554874262155 0.141186399007832 0.142233336455555 0.136555483482908 0.136998279999735 0.151228328259555 0.133767759171125 0.146345627183922 0.138730521760981 0.136824432078164 0.151027193696701 0.145079388584340 0.141465199927644 0.147209682516382 0.146011091900189 0.142011297454400 1 1 + 10625734 10626199 10626007.909 10625013 10627089 + gene protein_coding_gene FALSE TRUE AT1G30200.1|AT1G30200.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT5G46170.1); similar to P0432B10.4 [Oryza sativa (japonica cultivar-group)] (GB:BAB90386.1); similar to Os05g0510400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056009.1); similar to Os01g0770400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044377.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.176463126797012 1.83314003354610 0.102365264646975 1 2.23775934010546 15.9225645706342 0.176463126797012 0.0992191673679166
AT4G15410_at 6.00965813999267 6.28858506244412 5.78478766378112 5.79461013147472 5.73464730773158 6.13702462053083 5.79858458387782 6.23640146464987 5.37246087768963 4.97693357711375 5.29008266061294 6.07963106427618 5.89474694976272 6.08959581958244 5.66391592518858 5.87983428347757 5.87251205729895 5.37609671436243 5.15691431862465 0.219172639619001 0.230687628095956 0.216967774944574 0.217104900953834 0.216266661328706 0.216898023862395 0.221029988421099 0.218395094770264 0.244686518851102 0.213447154257848 0.224277592969129 0.215789398078797 0.217925819340551 0.215776945844846 0.216473558383963 0.216639425024189 0.224447233852854 0.230885141681076 0.219280882214937 4 4 + 8815810 8816572 8816248.273 8814801 8816805 + gene protein_coding_gene FALSE TRUE AT4G15410.1 ATB' GAMMA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime gamma) B' regulatory subunit of PP2A (AtB'gamma) mRNA, complete Identical to UBA and UBX domain-containing protein At4g15410 [Arabidopsis Thaliana] (GB:Q7Y175;GB:O23394;GB:Q94A11); similar to PUX4 (LANT UBX DOMAIN-CONTAINING PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT4G04210.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain SEP; (InterPro:IPR012989) 0.189496230657995 1.82917636761662 0.102998453095859 1 2.23244630233017 11.4415731345418 0.189496230657995 0.113675686195214
AT2G46600_at 12.2840746645877 12.3733006514750 12.7486743126696 12.8168153705454 12.4921142740440 12.5986640589542 12.3484950614959 12.5940944684871 11.7534631747372 11.9163492326789 11.6111597892175 11.3667688395033 12.1107866437994 11.7702859145848 11.2806982850700 11.7268938581895 11.8137035552400 11.4320165223444 11.2051671945631 0.0660514300932984 0.0637619559425436 0.0676046792708048 0.0658626500772175 0.065501305258467 0.0693556775864315 0.0667489147023084 0.06562214239969 0.0712727609816069 0.0637619559425436 0.0651309130602936 0.0641912299433769 0.065685869957835 0.0676741872208881 0.0637619559425436 0.064087904526781 0.0651452614919421 0.0706031281747472 0.0643046095689327 2 2 + 19143272 19143520 19143407.455 19143090 19143671 + gene protein_coding_gene FALSE TRUE AT2G46600.1 calcium-binding protein, putative similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to Os02g0122600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045728.1); similar to Os06g0683400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058389.1); similar to EF-hand Ca2+-binding protein CCD1 [Triticum aestivum] (GB:AAF86307.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.139060883937892 1.82907758211301 0.103014280885064 1 2.23231394278258 24.1640452961090 0.139060883937892 0.0502384591758033
AT4G32180_at 7.68857805970687 7.7218861820438 7.83675535700053 7.71575554210981 7.7816848162957 7.6916268754609 7.22619073371324 6.98118198382962 7.34492120202088 7.12419876310453 6.65784220225294 6.2878449806064 6.69535269978934 6.52008882690876 5.86468021356526 7.01729252345705 7.14082885465007 6.65914031167824 7.23690129650457 0.172206524784558 0.167056376128335 0.165298371561041 0.162395199136673 0.163054195399427 0.162591886002568 0.166503226448173 0.167453858852178 0.172680345057225 0.163174473604293 0.170025133556241 0.166588426936784 0.167863209971824 0.183471417759568 0.166912063797218 0.167046302591303 0.173966708634683 0.162827028487059 0.165998561300219 4 4|0 -|/ 15537909 15538563 15538202.3 15537565 15543910 - gene protein_coding_gene FALSE TRUE AT4G32180.1|AT4G32180.2 ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase Encodes a protein with pantothenate kinase activity. Identical to Pantothenate kinase 2 (EC 2.7.1.33) (Pantothenic acid kinase 2) [Arabidopsis Thaliana] (GB:Q8L5Y9;GB:O49372;GB:O49374); similar to ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT1G60440.1); similar to Pantothenate kinase PanK and related proteins (ISS) [Ostreococcus tauri] (GB:CAL51484.1); similar to putative pantothenate kinase 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD33319.1); similar to Os09g0533100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063766.1); contains InterPro domain Fumble; (InterPro:IPR011602); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567); contains InterPro domain Protein of unknown function DUF89; (InterPro:IPR002791)|Identical to Pantothenate kinase 2 (EC 2.7.1.33) (Pantothenic acid kinase 2) [Arabidopsis Thaliana] (GB:Q8L5Y9;GB:O49372;GB:O49374); similar to ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT1G60440.1); similar to Pantothenate kinase PanK and related proteins (ISS) [Ostreococcus tauri] (GB:CAL51484.1); similar to putative pantothenate kinase 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD33319.1); similar to Os09g0533100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063766.1); contains InterPro domain Fumble; (InterPro:IPR011602); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567) -0.138980093018229 -1.82888674913116 0.103044863353356 1 2.23205825948722 14.5008195673485 -0.138980093018229 0.0501231874180684
AT1G04400_at 10.8630988717924 11.0133082895345 10.8879197382242 11.0093078512067 11.2745610398235 11.0550308639390 10.3805758074000 10.5604924715469 10.2639606921173 10.5147988363115 10.5987663460690 10.0935292726125 10.5067708270310 10.1572956101226 10.2224016745499 10.2781248641540 10.2984242352582 10.4058174861495 10.3705587686483 0.0816954231971543 0.0789662482472335 0.0825259700574226 0.079435598182425 0.0796508328087464 0.091045342281495 0.0803425310226927 0.080041101149352 0.086469737565034 0.082282550823555 0.0807269923390171 0.0814574741614 0.0839298517801159 0.090871199314925 0.0797796661737463 0.0799787599356847 0.0837883377168846 0.0818635045932345 0.0832607112597833 1 0|1 /|- 1185792 1186247 1185997.2 1185549 1188516 - gene protein_coding_gene FALSE TRUE AT1G04400.1|AT1G04400.2 CRY2 (CRYPTOCHROME 2) Blue light receptor mediating blue-light regulated cotyledon expansion and flowering time. Positive regulator of the flowering-time gene CONSTANS. This gene possesses a light-induced CNT2 N-terminal homodimerisation domain.Involved in blue-light induced stomatal opening. Identical to Cryptochrome-2 (Blue light photoreceptor) (CRY2) [Arabidopsis Thaliana] (GB:Q96524;GB:Q42549;GB:Q42603;GB:Q42604;GB:Q8VWL9;GB:Q8VZY9); similar to CRY1 (CRYPTOCHROME 1, OUT OF PHASE 2) [Arabidopsis thaliana] (TAIR:AT4G08920.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67176.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67179.1); similar to cryptochrome 2 [Armoracia rusticana] (GB:BAC67178.1); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain Deoxyribodipyrimidine photolyase, class 1; (InterPro:IPR002081) 0.144685601848753 1.82879372970377 0.103059773536577 1 2.23193363318715 21.2321605609429 0.144685601848753 0.0594113188067457
AT3G09210_at 8.8363506290686 9.08627319350934 8.62089494980456 8.57572077321176 9.23005537213063 8.61291163441847 9.19968864023337 8.9270854123473 9.3890028235001 9.82137537469176 9.74553908385852 9.85043033948282 9.42661480165897 9.23591911834745 9.64882986937523 9.70937117882304 9.09161960350448 9.1015916977269 9.6619619732572 0.120745682880631 0.121589926949211 0.119102126945923 0.122143592585621 0.121366927251538 0.125183360993448 0.119075925486554 0.123791809767328 0.13014184696922 0.123809144464398 0.130445483736558 0.118945670776225 0.123075646277338 0.121893375178721 0.126530268824921 0.122628187351070 0.129154537913046 0.128593705750501 0.121189272034610 3 3 - 2825432 2826148 2825777.455 2825285 2826886 - gene protein_coding_gene FALSE TRUE AT3G09210.1 PTAC13 (PLASTID TRANSCRIPTIONALLY ACTIVE13); transcriptional elongation regulator similar to NusG [Medicago truncatula] (GB:ABE83852.1); contains InterPro domain NGN; (InterPro:IPR006645); contains InterPro domain Bacterial transcription antitermination protein NusG; (InterPro:IPR001062); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.200163857642072 -1.82799521798877 0.103187851372768 1 2.23086389658492 18.4362990016306 -0.200163857642072 0.124753198375992
AT3G50080_at 4.92404367442717 4.97483949639605 5.25724935816543 5.23363623639916 5.54847157860282 4.74586937917362 4.74577402521691 4.77390360739015 4.84262815406697 5.07829277472906 5.14077081211221 5.39974341778019 5.04393878920051 5.58131250481603 4.84810678261109 5.50485621667629 4.46815278881853 3.97588040060004 4.80096353515431 0.239778934960441 0.241925049476571 0.232899838984042 0.229968493219513 0.23508037216923 0.239333591872314 0.229968493219513 0.236510083258538 0.238572801332192 0.229968493219513 0.232572715767772 0.230918206389160 0.229968493219513 0.247425235234187 0.233175523365272 0.236353956131829 0.243755050626935 0.242236948071818 0.229968493219513 3 3 + 18584747 18585315 18585001.273 18583719 18585497 + gene protein_coding_gene FALSE TRUE AT3G50080.1 VFB2 (VIER F-BOX PROTEINE 2); ubiquitin-protein ligase similar to SKIP2 (SKP1 INTERACTING PARTNER 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G67250.1); similar to Avr9/Cf-9 rapidly elicited protein 189 [Nicotiana tabacum] (GB:AAP03878.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.214858414993884 1.82756767910800 0.103256488312509 1 2.23029121203064 9.97679343716823 0.214858414993884 0.139316996788547
AT1G80070_at 10.0185868176601 10.1833533735346 9.78279034983579 9.90255949910158 10.3353134057803 9.9514058695454 9.95241566863094 9.95746067891954 10.0121297499274 10.0990968279091 9.76562913790795 9.85255287595927 9.87045763340098 9.70129553175072 9.59254279064918 9.87289933786862 9.79486015928779 9.9021971069852 10.1006527168822 0.0959072903904426 0.096994529424943 0.109534121905784 0.106551030062035 0.100576731035480 0.101064843077309 0.100630444959212 0.100792235209139 0.111438401997715 0.0949889835030198 0.096130481133532 0.0950639293287493 0.0957987279218663 0.104175087172598 0.101594776721715 0.100233955478090 0.111741425337303 0.096588208127005 0.0980068671336092 1 1|0 +|/ 30131758 30132440 30132093.4 30122945 30132704 + gene protein_coding_gene FALSE TRUE AT1G80070.1 SUS2 (ABNORMAL SUSPENSOR 2) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT4G38780.1); similar to PREDICTED: similar to Pre-mRNA-processing-splicing factor 8 (Splicing factor Prp8) (PRP8 homolog) (220 kDa U5 snRNP-specific protein) (p220) [Rattus norve (GB:XP_213385.3); similar to putative splicing factor Prp8 [Oryza sativa (japonica cultivar-group)] (GB:BAD67606.1); similar to PREDICTED: similar to splicing factor Prp8 [Gallus gallus] (GB:XP_415805.2); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain PRO8NT; (InterPro:IPR012591); contains InterPro domain PRO, C-terminal; (InterPro:IPR012984); contains InterPro domain PROCN; (InterPro:IPR012592) -0.1557544817336 -1.82641887216582 0.103441130204143 1 2.22875264941600 19.9428260845256 -0.1557544817336 0.0752147243748496
AT2G35010_at 5.91067304250576 6.37898414152927 6.52744919386433 6.689248270325 6.63294632818735 5.92132794659397 6.9215124000081 6.6647086722677 4.42912273010040 5.26665008061833 5.18796412301971 5.31886963500901 5.16522275603869 5.2242394791454 5.70498696133513 5.62022047679022 5.38370806444692 5.02775379708055 4.81647134244709 0.250113370738064 0.242210313362644 0.247368422057819 0.240135592072856 0.240371519189502 0.244961064335572 0.236265050840482 0.233790855821491 0.254052899350127 0.239217417613463 0.236486293951545 0.231414453715222 0.235068757963835 0.241206967653203 0.231925300382307 0.237212278018547 0.239716191758418 0.238950888456357 0.240229653751841 2 2|0 +|/ 14761498 14762940 14761938.556 14761350 14763402 + gene protein_coding_gene FALSE TRUE AT2G35010.1|AT2G35010.2 ATO1 (ARABIDOPSIS THIOREDOXIN O1); thiol-disulfide exchange intermediate|ATO1 (ARABIDOPSIS THIOREDOXIN O1) similar to ATO2 (Arabidopsis thioredoxin o2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G31020.1); similar to putative thioredoxin [Pisum sativum] (GB:CAJ84246.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.232739657275606 1.82618158786506 0.103479306385350 1 2.22843490788451 11.5391239390753 0.232739657275606 0.156501428337078
AT4G29490_at 7.85522221482709 7.86415029737914 8.14022128216933 8.18456810632588 8.39424667428437 8.01558227543173 8.01920846605007 7.76314042504238 6.89834947670082 7.06437411625466 6.6779927971767 6.7162647146079 6.97807982206834 7.12945627634233 6.90233407607426 6.97225240644584 7.39439513677689 7.03085591205751 6.93338037453696 0.129465899516671 0.128139921426182 0.132907144613627 0.130943653758321 0.130656202306921 0.128271503300715 0.132306018854828 0.128595849722260 0.132354116591035 0.127194346276720 0.128597243881441 0.125466664501951 0.124506233286745 0.128798582947991 0.129211236418347 0.124311913489924 0.131632381851464 0.131073990302192 0.130409496797565 4 4|0 +|/ 14488754 14491290 14490143.765 14487906 14491531 + gene protein_coding_gene FALSE TRUE AT4G29490.1 X-Pro dipeptidase similar to metallopeptidase M24 family protein [Arabidopsis thaliana] (TAIR:AT1G09300.1); similar to Os02g0224400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046335.1); similar to Chain A, Crystal Structure Of Human Prolidase (GB:2IW2); similar to hypothetical protein LOC415776 [Gallus gallus] (GB:NP_001073185.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24B, X-Pro dipeptidase/aminopeptidase N-terminal; (InterPro:IPR007865) 0.159030068628865 1.82568411188845 0.103559387292650 1 2.22776880152261 14.9998284086177 0.159030068628865 0.079492941913986
AT1G65580_at 8.57179009485993 8.51849461099556 8.41493741055645 8.55596476499403 8.9419578022943 8.51435046955318 8.58192093749942 8.16040419238115 8.23024956094102 8.20844502426884 8.36906275907202 8.30385491350367 8.37883707074504 8.55974875063192 8.02989118934429 8.61570863425639 8.27608479175687 8.36282609196305 7.99559597712065 0.108758750824546 0.106264012837045 0.110398498195614 0.109607206804019 0.112906061777829 0.116895749964239 0.113546961734908 0.111702957891647 0.117333775780088 0.109087913394197 0.111406977539045 0.108169787688728 0.112892067480452 0.110696354586144 0.105656261662275 0.108731125855031 0.111847318915490 0.114176424469158 0.112315445675252 1 1|0 -|/ 24381312 24381915 24381524.222 24380977 24387742 - gene protein_coding_gene FALSE TRUE AT1G65580.1 FRA3 (FRAGILE FIBER3); inositol or phosphatidylinositol phosphatase Identical to Type II inositol-1,4,5-trisphosphate 5-phosphatase 12 (EC 3.1.3.36) (At5PTase12) (FRAGILE FIBER3 protein) (FRA3) [Arabidopsis Thaliana] (GB:Q84W55;GB:O04475;GB:Q5MK18;GB:Q9XFT1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G43900.1); similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT2G31830.1); similar to 5PTASE13/AT5PTASE13, inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT1G05630.2); similar to Os09g0500300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063577.1); similar to Inositol polyphosphate related phosphatase; PapD-like; WD40-like [Medicago truncatula] (GB:ABE79233.1); similar to Os08g0524100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062285.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.182944203648898 1.82540288244784 0.103604683826775 1 2.22739227401138 16.7858601833597 0.182944203648898 0.107133769190674
AT1G09310_at 13.1979283641102 13.136034510224 13.4515733779928 13.3615297024998 13.7357052530770 13.6955068232790 14.1719963761371 14.2375586713224 14.2648439397728 14.464647783261 14.9388718795905 14.8758833843460 14.8122330933886 14.7625481976567 14.8000243342296 14.2958461276297 14.4728162931320 14.8728272840094 14.3213873219757 0.0473924396710468 0.0446383524296099 0.0446529923081225 0.0466369481576659 0.0438752989744296 0.0455667743672870 0.0463414846369945 0.0491996494167535 0.0505751770092255 0.0465175835638892 0.0452562043085603 0.0446667396680193 0.0447128826537594 0.0469227390421854 0.0461294395014111 0.0469510004597132 0.0478182473053592 0.0466475208106285 0.0469526709581563 1 1 + 3009201 3009612 3009439.727 3009057 3009882 + gene protein_coding_gene FALSE TRUE AT1G09310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56580.1); similar to Os12g0563600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067038.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10818.1); similar to Os11g0683600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068462.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.126893809004189 1.82531034664909 0.103619592282814 1 2.22726838618245 28.1630663044558 0.126893809004189 0.0231227460029802
AT4G30996_at 7.3943064052359 7.78088699174831 6.960615287281 7.06096090560083 7.63286613945024 7.46694831049696 7.97515691393648 7.9845210602527 8.2419328791723 8.13069278018651 8.70460069963797 8.74611525292738 8.08589497337207 8.29119530669396 8.71102070394411 8.03139927663024 7.60809574941299 8.33729985758719 7.99288763445172 0.157163223689445 0.147309007386638 0.176183130097431 0.160036560857260 0.153804300311147 0.157053761904984 0.149223792243513 0.147957097369933 0.158217518203252 0.154681483496271 0.152654224226395 0.154484773426908 0.150009033397259 0.14821679767386 0.164689001880301 0.158188586970041 0.158464193421244 0.147309007386638 0.156626071049799 4 4 + 15101496 15102431 15102082.364 15101301 15102690 + gene protein_coding_gene FALSE TRUE AT4G30996.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24290.1); similar to H0311C03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67554.1); similar to Os04g0501800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053232.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) -0.155377609581929 -1.82517530674762 0.103641352201910 1 2.22708759777381 15.7501779978149 -0.155377609581929 0.0748609365466829
AT1G05570_at 10.0062106406268 10.2387417481562 10.0999052743620 10.1714686497269 9.93115562242197 9.02342729682593 6.49129217351676 6.64824671782919 7.24594011434196 6.51644973632409 5.1373518189135 5.66641437913394 6.0014008647745 6.41269979439046 5.17143116562765 6.13414665066133 6.3429708065274 6.43111399936413 6.90585929060236 0.266175375750008 0.267631556063362 0.267246201075985 0.264746598758612 0.267264847099037 0.273541019504208 0.258669548674271 0.258048474944555 0.277624682323281 0.260109997658808 0.261285989070264 0.257872387675245 0.257251246926502 0.260016188761629 0.269440756341354 0.256917029078245 0.278787904169446 0.271996573446549 0.257863110313589 1 1 - 1647922 1648709 1648262.545 1647719 1658685 - gene protein_coding_gene FALSE TRUE AT1G05570.1 CALS1 (CALLOSE SYNTHASE 1); transferase, transferring glycosyl groups Encodes a callose synthase 1 catalytic subunit . Member of Glycosyltransferase Family- 48. similar to ATGSL03 (GLUCAN SYNTHASE-LIKE 3), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G31960.1); similar to ATGSL12 (GLUCAN SYNTHASE-LIKE 12), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G13000.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93351.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) 0.241570597651641 1.82477593832047 0.103705730368453 1 2.22655296229075 15.4771097981067 0.241570597651641 0.164883726072312
AT1G55325_at 6.13008260449309 6.3562762903548 6.19370398449932 6.40180954083933 6.58486806749735 6.84926931315998 5.4543263023728 6.19859123689576 5.37294585925026 5.72342594875089 5.50545344704395 5.61756723433292 5.0817421580671 5.57920483323953 5.67579145746223 6.08476362369724 5.48977797074274 5.50634903845664 5.69173541495609 0.205101987656207 0.199118193874666 0.206538238056359 0.199326227192210 0.198268145076384 0.207584945321340 0.207121963899158 0.204002943359328 0.209758527452235 0.200304465348811 0.197102667766414 0.197102667766414 0.202733217205995 0.201782227179388 0.198037126533349 0.199698244542991 0.210139995021789 0.201250014928904 0.200086000945552 1 1 + 20649980 20650472 20650213.545 20641103 20650885 + gene protein_coding_gene FALSE TRUE AT1G55325.1 similar to Rhodopsin-like GPCR superfamily [Medicago truncatula] (GB:ABE89148.1); similar to Os05g0447500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055694.1); contains InterPro domain TRAP240; (InterPro:IPR009401) 0.222069548682214 1.82398754543941 0.103832929672278 1 2.22549767081719 11.8529243981971 0.222069548682214 0.146669296573912
AT1G80010_at 5.33550081044397 5.72592090509761 5.9119714439926 6.20644432005585 6.13194381989829 5.86649228890145 5.37584150854759 5.5945295246572 5.51348406014301 5.22066215599405 5.2000939860576 5.03958585674804 5.35757460398454 5.16914694943204 5.00063582395096 5.04339719620112 4.94495506881276 5.11726844767405 5.08133736780924 0.193311591563831 0.191841776146697 0.192484921795636 0.198516127418793 0.1903984896241 0.199105578094999 0.195644991767591 0.191136621171998 0.205083122451983 0.194646706188114 0.187980805468737 0.187263978483896 0.19941180879397 0.199780358909110 0.196864691979771 0.187263978483896 0.205085183719586 0.190583761039678 0.191664271938642 1 1 + 30104147 30104669 30104374.909 30102649 30104739 + gene protein_coding_gene FALSE TRUE AT1G80010.1 FRS8 (FAR1-related sequence 8); zinc ion binding similar to FRS6 (FAR1-related sequence 6), zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G52520.1); similar to Heavy metal transport/detoxification protein [Medicago truncatula] (GB:ABE93744.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) 0.179259580658827 1.82235928846808 0.104096097166792 1 2.22331874733903 10.9590356291609 0.179259580658827 0.103461666620090
AT2G34660_at 7.471981640451 7.55036617009025 8.25819937400005 8.1997381350744 8.21307413072625 7.71199709959174 8.67713614908926 8.75320757902568 7.1731576103951 8.06743163587526 6.99797214282721 7.01818316452063 7.46156687032473 7.75926353727038 6.48395275710308 7.97048505633295 7.35403727239428 7.72981322718283 7.74839679474317 0.181395907416754 0.169758304927416 0.170120226689175 0.175180801630374 0.174257160303080 0.175712224628905 0.181719905197748 0.170207511452019 0.179735232068408 0.168662852145962 0.179559918255033 0.16832076808596 0.167756909872941 0.168208258093649 0.170470363263406 0.169357789608681 0.172260466680057 0.182996566757947 0.170610980827739 2 2 + 14618663 14619397 14618964 14609779 14619644 + gene protein_coding_gene FALSE TRUE AT2G34660.1 ATMRP2 (MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2); ATPase, coupled to transmembrane movement of substances encodes a multidrug resistance-associated protein that is MgATP-energized glutathione S-conjugate pump. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. Identical to Multidrug resistance-associated protein 2 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 2) (ATP-energized glutathione S- conjugate pump 2) (MRP2) [Arabidopsis Thaliana] (GB:Q42093;GB:O22449;GB:O24526;GB:O48907;GB:O48908;GB:O64590); similar to ATMRP12 (Arabidopsis thaliana multidrug resistance-associated protein 12) [Arabidopsis thaliana] (TAIR:AT1G30420.1); similar to ATMRP13 (Arabidopsis thaliana multidrug resistance-associated protein 13) [Arabidopsis thaliana] (TAIR:AT1G30410.1); similar to ATMRP1 (Arabidopsis thaliana multidrug resistance-associated protein 1), xenobiotic-transporting ATPase [Arabidopsis thaliana] (TAIR:AT1G30400.2); similar to Multidrug resistance-associated protein 12 (Glutathione S-conjugate-transporting ATPase 12) (ATP-ener (GB:Q9C8H1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59448.1); similar to H0714H04.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66978.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.166753396662966 -1.82180496408537 0.104185833000541 1 2.22257712492330 15.6094148350056 -0.166753396662966 0.0893248606745157
AT4G19160_at 9.0615706645384 8.75273138034704 8.61888898915957 8.43892682800827 9.94088697595649 8.96889249372586 9.39117664000412 8.63367974567676 9.47236652933162 9.19821110627468 8.87102824854478 8.553754606433 8.62694587783905 8.64071393009432 8.72987024024845 8.78044482984712 8.45317475036478 8.97417536916861 9.36734701591354 0.124553545139696 0.122463174974305 0.126891007811082 0.123560183999688 0.127117987265264 0.127754276409226 0.127296481118292 0.123948896078377 0.125867959312320 0.125669645237461 0.116274979306267 0.122572320120919 0.124504912866034 0.132239235370813 0.122977628246421 0.121293109452038 0.137738227749640 0.128632072273783 0.125095574999761 4 4|0 +|/ 10479207 10479900 10479483.7 10477307 10480150 + gene protein_coding_gene FALSE TRUE AT4G19160.1|AT4G19160.2|AT4G19160.3 binding similar to similar to Uncharacterized conserved protein [Crocosphaera watsonii WH 8501] (GB:ZP_00518391.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to similar to Uncharacterized conserved protein [Crocosphaera watsonii WH 8501] (GB:ZP_00518391.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.30505109410073 -1.82112058994575 0.104296722026292 1 2.22166163090810 18.0007133973808 -0.30505109410073 0.222046256471808
AT4G09040_at 6.9526268413 7.03957157738636 6.15690077353404 6.21479025058258 6.7749180567594 6.99203209032523 7.42220249175051 7.5869940782588 5.65198884144558 6.61685167004082 6.91946085382739 7.28657392232201 7.30888034327828 7.23226655548512 7.90511140371979 7.45931278765424 7.08338515489178 6.57318229281176 6.4156004119757 0.289201606957003 0.292200683997802 0.285299652719244 0.301420452720283 0.290602554472924 0.308210744299924 0.282563046090862 0.285424915632631 0.312829503189155 0.296414858678818 0.287636539033060 0.283252305412707 0.281688512034839 0.284238684947911 0.309869469135977 0.281688512034839 0.317886690107084 0.281688512034839 0.283820900025429 4 4 - 5796750 5797142 5797004.833 5794527 5797372 - gene protein_coding_gene FALSE TRUE AT4G09040.1|AT4G09040.2 RNA recognition motif (RRM)-containing protein similar to 33 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp33, putative [Arabidopsis thaliana] (TAIR:AT2G35410.1); similar to Os08g0483200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062073.1); similar to RNA-binding re (GB:ABE85149.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.138593117693909 1.82083946074341 0.104342305482310 1 2.22128560008063 13.6170888393552 0.138593117693909 0.0505145790701097
AT2G39810_at 5.82476235899524 6.1807602902034 5.43780406518813 5.30130291536568 5.72024326794267 5.16088845334468 5.37692417358366 5.56076445895882 5.47705032136064 5.53389794862747 5.18004037514734 5.82465750466996 5.26448634453306 5.77462618513462 5.46131774701963 5.58833699795774 5.39829511454128 5.32147869642996 5.60318863544752 0.217422807579854 0.218004162055181 0.207960332736958 0.220595845901134 0.215009453371516 0.207960332736958 0.218515112167298 0.216892412864200 0.220206770432893 0.207960332736958 0.207960332736958 0.207960332736958 0.207960332736958 0.223926443114672 0.214206681643220 0.207960332736958 0.223724946292716 0.224882135094787 0.223144091527239 2 2 + 16624064 16624821 16624360.818 16619883 16625135 + gene protein_coding_gene FALSE TRUE AT2G39810.1 HOS1 (High expression of osmotically responsive genes 1) A novel protein with a RING finger motif near the amino terminus. Negative regulator of cold responses. Functions as an E3 ligase required for the ubiquitination of ICE1. HOS1 physically interacts with ICE1 and mediates the ubiquitination of ICE1 both in vitro and in vivo. Overexpression represses the expression of CBFs and their downstream genes and confers increased sensitivity to freezing stress. Identical to E3 ubiquitin-protein ligase HOS1 (EC 6.3.2.-) (RING finger protein HOS1) (Protein HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE 1) (HOS1) [Arabidopsis Thaliana] (GB:Q84JU6;GB:O22289); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAR07079.1); contains InterPro domain Iron dependent repressor; (InterPro:IPR001367) -0.196066954720501 -1.82076035680889 0.104355135098178 1 2.22117979683556 11.0777815008600 -0.196066954720501 0.121390433341049
AT4G26480_at 7.7184781750544 7.09154327066209 7.02264850144531 7.32281772328462 7.07315441072054 7.37718855530548 7.62648496427049 7.81516944221193 6.99838392741085 6.75639317576951 7.84078081530321 7.47880895840578 8.19779846809062 7.9643483688062 7.10035215506776 7.68588752707505 7.88726921527465 6.69495945219911 6.71311496931318 0.162971147345952 0.166707925674521 0.169531821960043 0.165673228531904 0.166113267659962 0.172494349605995 0.162826954642948 0.165011772490059 0.164602141918096 0.164287587810631 0.160345502460504 0.165058395678954 0.172787157627791 0.164164321819083 0.166756248815239 0.160345502460504 0.169029000667233 0.167116322441473 0.172772616779353 4 4|0 -|/ 13372921 13374147 13373277.3 13372893 13378398 - gene protein_coding_gene FALSE TRUE AT4G26480.1 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G56140.1); similar to putative KH domain protein [Oryza sativa (japonica cultivar-group)] (GB:BAD13019.1); contains InterPro domain Nicotianamine synthase; (InterPro:IPR004298); contains InterPro domain KH; (InterPro:IPR004087) 0.209839131917942 1.81986855570730 0.104499876104305 1 2.21998711620072 14.5953887857988 0.209839131917942 0.135291511919318
AT3G46960_at 6.58259616072005 6.77512701137821 6.51492108974998 6.19607412787574 7.20182262604413 6.984972275769 6.65733329404967 6.69543133622212 6.46650079565239 6.46295094639112 5.84081273134831 6.51716464016175 6.13369469351709 6.42057762653817 5.88292962390676 6.33084554242158 5.79687545241757 5.97662054761034 6.47793877946092 0.207016434639359 0.202210041304256 0.208578769145667 0.206852527346235 0.205002203326612 0.209102680444844 0.203130419969452 0.213205471224247 0.213350568972057 0.204315036810469 0.208685971594278 0.202499824442694 0.205193315090693 0.203034782668714 0.201172046149957 0.202864671960636 0.242563405567043 0.209868287359683 0.201172046149957 3 0|3 /|- 17302004 17302685 17302354.4 17301858 17309052 - gene protein_coding_gene FALSE TRUE AT3G46960.1 ATP-dependent helicase similar to HEN2 (HUA ENHANCER 2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT2G06990.1); similar to superkiller viralicidic activity 2-like [Rattus norve (GB:NP_998724.1); similar to putative Helicase SKI2W [Oryza sativa (japonica cultivar-group)] (GB:BAD28046.1); similar to hypothetical protein [Mus musculus] (GB:AAC05282.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.154932243663709 -1.81980612980037 0.10451001500995 1 2.21990363724188 12.9918198807636 -0.154932243663709 0.0748763053066718
AT3G08020_at 5.95725789808491 6.21866030902661 6.26312819913762 6.34011280015659 6.60922558540862 6.60447315492931 6.18419351869457 6.02472030670269 5.80350221338534 5.54396039465191 5.70129112641993 5.62955369062911 5.43949425612212 5.48973427752637 5.12142355988584 5.46680330187381 5.70213185109879 5.33228705998337 5.33737683541764 0.163597889771908 0.167213936491864 0.172809165450227 0.161621818784450 0.166866980786069 0.167416117637583 0.164410372833992 0.162451080617417 0.169690824666437 0.170625258248126 0.163440565403361 0.168989728920698 0.174889261500810 0.17666729280927 0.170940999859966 0.165628535961830 0.165783098831844 0.168149504961523 0.166852544569994 3 3 - 2557787 2558432 2558145.455 2557443 2561808 - gene protein_coding_gene FALSE TRUE AT3G08020.1 protein binding / zinc ion binding similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT3G52100.1); similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_795757.2); similar to Os12g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066909.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.140876834702479 1.81865373713121 0.104697347031350 1 2.21836280072015 11.7986979906480 0.140876834702479 0.0546458677735593
AT3G54540_at 9.31034963239719 9.54796166669333 9.24345819908436 9.24896409264695 9.65438055738696 9.43138450009004 9.45027218659807 9.51325820317115 9.21161453981229 8.98650990399765 8.87719366904437 8.9664730949272 8.85320313029642 8.93251454648176 8.87779641992936 8.91651736435501 8.82659609619876 8.692456795907 9.07832194731947 0.104812302814819 0.107194675105197 0.104863598916075 0.110289449723692 0.107190580313530 0.104145793883403 0.105385740137970 0.107029441811046 0.110221832554179 0.112697264167183 0.107218491022076 0.103704203770684 0.107438987915455 0.103704203770684 0.111753529893115 0.103704203770684 0.114099672437461 0.107880011070731 0.105679579161698 3 3 + 20202944 20203467 20203201.727 20200783 20203770 + gene protein_coding_gene FALSE TRUE AT3G54540.1 ATGCN4 (Arabidopsis thaliana general control non-repressible 4) member of GCN subfamily similar to ATGCN3 (Arabidopsis thaliana general control non-repressible 3) [Arabidopsis thaliana] (TAIR:AT1G64550.1); similar to Os03g0441500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050461.1); similar to ABC transporter [Populus tremula x Populus tremuloides] (GB:CAE47098.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.142609246156757 -1.81852502961055 0.104718289199556 1 2.21819073244551 18.4049999731013 -0.142609246156757 0.0574437937687945
AT1G80350_at 5.77554741305675 5.61661935235673 4.94845162969732 5.18492366485731 5.41490795267585 5.69330821841359 5.65853831901505 5.9051835243365 6.10970877562094 5.76756650313429 6.1672413787698 6.25856857908926 5.51509089316163 5.94288307707627 6.11624107762482 5.77535856065197 6.00955188159987 5.91763327386630 5.68340628425829 0.187681954276268 0.180185067379629 0.194742358907355 0.191442437587626 0.179641471982297 0.193966928871831 0.181073332359408 0.180862437930879 0.196293855389244 0.189281281931957 0.183323554714935 0.183400751444566 0.189612675456663 0.189131894382936 0.179641471982297 0.186011986793499 0.181601395024608 0.187590407645833 0.185848815485315 1 1|0 -|/ 30210394 30211210 30210658.5 30210207 30213097 - gene protein_coding_gene FALSE TRUE AT1G80350.1 ERH3 (ECTOPIC ROOT HAIR 3); ATP binding / nucleoside-triphosphatase/ nucleotide binding encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects. Identical to Katanin p60 ATPase-containing subunit (EC 3.6.4.3) (Katanin p60 subunit) (p60 katanin) (Atp60) (CAD ATPase) (Katanin 1) (BOTERO1 protein) (ECTOPIC ROOT HAIR 3 protein) (FAT ROOT protein) (FRAGILE FIBER 2 protein) (AtAAA1) (AAA1) [Arabidopsis Thaliana] (GB:Q9SEX2;GB:Q8S9E4); similar to katanin, putative [Arabidopsis thaliana] (TAIR:AT2G34560.2); similar to katanin [Gossypium barbadense] (GB:AAP83638.1); similar to katanin [Gossypium hirsutum] (GB:AAP83637.1); similar to katanin-like protein [Gossypium hirsutum] (GB:AAP43505.2); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.159656858277378 -1.81838763094434 0.104740649859078 1 2.21800705023821 11.4328758149184 -0.159656858277378 0.0810808133926206
AT3G44110_at 10.4195485930559 10.5084229957770 10.6320384907777 10.7388634119401 10.760174088401 10.7411115886687 10.6673779796379 10.8691405870533 10.0989511028903 10.5469289738658 10.6031078851789 10.4961403671868 10.5137942909076 10.5826898370314 10.5662726498136 10.5699129167765 10.4258791242103 10.4537353826196 10.4348710061562 0.0656303898315063 0.0627198911748755 0.06266060805373 0.0621011574766834 0.0633272438482801 0.0640948887613036 0.0640409256007592 0.067607179893964 0.0810156158798768 0.0642617775092166 0.0640337605399844 0.0621011574766834 0.0636109637535905 0.0665234515610983 0.0648134402343201 0.0622922698734648 0.0692860384475283 0.0638003893605321 0.063314570158802 3 0|3 /|- 15880125 15880608 15880333.9 15879781 15882243 - gene protein_coding_gene FALSE TRUE AT3G44110.1|AT3G44110.2 ATJ3 (Arabidopsis thaliana DnaJ homologue 3) homologous to the co-chaperon DNAJ protein from E coli Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana DnaJ homologue 2) [Arabidopsis thaliana] (TAIR:AT5G22060.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78148.1); similar to DnaJ-like protein [Solanum tuberosum] (GB:ABB16989.1); similar to seed maturation protein PM37 [Glycine max] (GB:AAD51625.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)|Identical to Chaperone protein dnaJ 3 (AtJ3) (AtDjA3) (ATJ3) [Arabidopsis Thaliana] (GB:Q94AW8;GB:O22663;GB:Q42530); similar to ATJ2 (Arabidopsis thaliana DnaJ homologue 2) [Arabidopsis thaliana] (TAIR:AT5G22060.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE78148.1); contains InterPro domain DnaJ central region; (InterPro:IPR001305); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.134057775905343 1.81766813116597 0.104857816626025 1 2.2170452705866 21.1104306757571 0.134057775905343 0.0425242010355777
AT2G26600_at 8.6037301916369 8.87832077011471 9.10580151849805 9.05594759164295 8.92028096339816 8.54034982561154 8.37801429853765 8.39032353073877 7.75924277304013 7.46935365285514 7.23000647854711 7.10166679079726 7.78161400744322 7.67466644105401 6.3058556017485 7.47629762650063 7.84141269519344 7.4902739752106 6.92856787286663 0.175621535998569 0.180765904078101 0.174772214495135 0.183425815753288 0.181382623590372 0.184396674496110 0.177926350803462 0.172097950725788 0.189243085023737 0.181205650969858 0.180712698203467 0.183671004031547 0.174367266251240 0.189250864762144 0.176037855337925 0.173043433750609 0.176542947892633 0.173373463054599 0.177807298909191 2 2|0 +|/ 11324610 11325269 11324916.9 11323490 11325561 + gene protein_coding_gene FALSE TRUE AT2G26600.1|AT2G26600.2 glycosyl hydrolase family 17 protein similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G15800.1); similar to beta-1,3-glucanase 1 [Ziziphus jujuba] (GB:AAY25165.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.160000273085939 1.81748543641111 0.104887587106899 1 2.21680107982875 16.1083189037636 0.160000273085939 0.0816085477356424
AT3G16100_at 7.61203877101539 7.73679193630934 7.60177683037001 7.66813794674937 8.0040843926515 7.56253668280257 8.70607804023659 8.19927739075543 7.70508748887976 7.77368150860105 7.63492427917357 7.69636137834504 7.89592714273413 7.75838798902168 7.83596134945726 7.82260665129412 7.72538260873206 7.43407091144321 7.79358534012545 0.14956863920143 0.148592722701743 0.150978872156517 0.154513095065617 0.148624838412511 0.160300898681296 0.157442652274996 0.155336451641028 0.161782673343205 0.159577429499323 0.152282350739358 0.154829767611905 0.158334376294256 0.157751790150876 0.168835819441149 0.147562681964880 0.162145240577206 0.153151979539196 0.149754167943660 3 0|3 /|+ 5459578 5460538 5460186 5459178 5460796 + gene protein_coding_gene FALSE TRUE AT3G16100.1 AtRABG3c/AtRab7D (Arabidopsis Rab GTPase homolog G3c); GTP binding similar to AtRABG3d (Arabidopsis Rab GTPase homolog G3d), GTP binding [Arabidopsis thaliana] (TAIR:AT1G52280.1); similar to Ras-related protein Rab7 (GB:Q9XER8); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.193205614264720 -1.81697391410687 0.104970982950448 1 2.21611742710897 15.6277923661832 -0.193205614264720 0.118864549210494
AT4G30550_at 8.0360836374683 8.41037670004746 8.2914402869479 8.64992172540735 9.29918360611341 8.68150028896994 8.58435004497265 8.50714958851603 8.49575713260564 8.04371024188504 8.61287847928973 7.98743581613949 8.52362003884551 8.3705754804082 7.82738369085898 8.18821243595022 8.03332265278748 8.16872347124452 7.85383302143074 0.172789748635635 0.165059726704294 0.174967340383320 0.169553828316724 0.170327680583681 0.178376196029311 0.173253870371664 0.163617229019141 0.163962711474818 0.171884174987517 0.165228496340176 0.169411510949002 0.167760304206102 0.182365466149377 0.177555741814463 0.162330120962173 0.171576796419389 0.170714967794081 0.166281173868405 4 4|0 +|/ 14925774 14926657 14926165.5 14925416 14926867 + gene protein_coding_gene FALSE TRUE AT4G30550.1 glutamine amidotransferase class-I domain-containing protein similar to defense-related protein, putative [Arabidopsis thaliana] (TAIR:AT2G23970.1); similar to defense-related protein [Brassica carinata] (GB:AAK50344.1); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Carbamoyl-phosphate synthase, GATase region; (InterPro:IPR001317); contains InterPro domain Homoserine O-succinyltransferase; (InterPro:IPR005697); contains InterPro domain Glutamine amidotransferase superfamily; (InterPro:IPR011702) 0.214470180162627 1.8167843638086 0.105001902026149 1 2.21586411092676 16.7300603048875 0.214470180162627 0.140173938965939
AT1G66240_at 10.2259194451351 10.2167025655505 10.4621161015861 10.4209364282806 10.1976696242657 9.91477968895567 10.0966838243393 10.1231690447936 10.2625289747471 10.3878819987649 10.5028914640364 10.5002558547649 10.4297988349029 10.4156968358616 10.3475123899176 10.5451936368652 10.5386110758814 10.4321497476008 10.1648202384862 0.0784740657139109 0.0801201348012063 0.078900243093703 0.0811229777384613 0.0807645075697716 0.0853880604218863 0.0829895011477797 0.0834933872862169 0.0947534678602793 0.085241871451527 0.0827477593058883 0.0800186688383195 0.0838181081768676 0.0784740657139109 0.080591655342093 0.080025457512765 0.0859001825775744 0.0851377821358824 0.0791819519499018 1 1|0 -|/ 24690168 24690959 24690631.875 24689921 24690995 - gene protein_coding_gene FALSE TRUE AT1G66240.1 ATX1; metal ion binding similar to CCH (COPPER CHAPERONE) [Arabidopsis thaliana] (TAIR:AT3G56240.1); similar to copper chaperone [Populus alba x Populus tremula var. glandulosa] (GB:AAT12488.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.137763366731758 1.81597544819765 0.105133946947310 1 2.21478318648319 20.5751258240191 0.137763366731758 0.0497088485530851
AT3G48710_at 4.27258149337186 4.92501114813206 5.02081509721927 4.87010040174421 5.73161475587333 5.21487986166542 4.70577117729291 4.2711645507087 4.73175279568719 4.68467481646315 4.71163953767084 4.59744097057879 4.44002083972506 4.95094941966542 4.37720838097841 4.97122163227902 4.56022634744436 4.79262709323766 5.16589852056703 0.191111205365452 0.201593372216052 0.204660137588952 0.192101307822910 0.194527798065156 0.195544166475201 0.197469876459848 0.188005338913923 0.182143296498794 0.188945101017523 0.181164563750219 0.181164563750219 0.193731242165427 0.187080437762708 0.184216809718332 0.183052731416605 0.181164563750219 0.193380202927712 0.189030439391077 3 3|0 +|/ 18054201 18054881 18054454.111 18051922 18055211 + gene protein_coding_gene FALSE TRUE AT3G48710.1 GTP binding / RNA binding similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G63550.1); similar to Os01g0924900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045251.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71219.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897) 0.240055918437080 1.81593733093462 0.105140172939698 1 2.21473225638753 9.64446338838592 0.240055918437080 0.164563724936609
AT1G19880_at 5.13721795484878 4.73804458256132 5.07409352085487 4.63726817603582 4.97884101938684 5.2384292514513 4.95513599251736 5.27181418295912 4.38656405737058 4.27333989210732 5.20024894235614 4.97966806766828 4.82406701317806 5.05374632149444 4.75032456259266 4.9209744974743 5.02785079862756 3.75768229873402 4.4625214584148 0.215746508650875 0.221714951058944 0.211064767168956 0.214515701646855 0.226049663762531 0.215982674200393 0.213999149291857 0.221934661731408 0.242507767931735 0.211302892939786 0.219199120113366 0.215005368619136 0.215310163972839 0.219584515840125 0.211177340830851 0.212821190948616 0.211218745451698 0.214473631586294 0.213842350785115 1 1|0 -|/ 6900666 6901553 6901194.25 6900406 6904060 - gene protein_coding_gene FALSE TRUE AT1G19880.1 regulator of chromosome condensation (RCC1) family protein similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to Os04g0662800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054159.1); similar to FOG: RCC1 domain (ISS) [Ostreococcus tauri] (GB:CAL58552.1); similar to OSJNBa0084K01.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE04840.2); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.198391661922674 1.81381180530262 0.105487900306169 1 2.21189290941488 9.59808664277522 0.198391661922674 0.124530464288567
AT1G61900_at 6.84097196588224 7.21953258208441 7.00361021948898 7.43989426881378 7.88975666960005 7.77845500647569 7.59221465777243 7.83044102553067 8.03794468911759 7.37916750786414 8.55400523439874 7.8163938582455 8.21675439757232 8.20386293437914 7.45109143675354 7.71019391150554 7.45334229909747 8.05128469413725 7.7450765444512 0.225276230134342 0.226208467302910 0.237772530789976 0.234277526897674 0.223327456151857 0.235954648774206 0.230601975210006 0.220807840830079 0.232473945039149 0.219857182758338 0.211437038571760 0.215322416966517 0.225772699449922 0.224495389071405 0.245600056859825 0.210452518884382 0.228350250781811 0.231079171572553 0.220791690570509 1 0|1 /|- 22886173 22887061 22886566.75 22885880 22888718 - gene protein_coding_gene FALSE TRUE AT1G61900.1|AT1G61900.2 Identical to Uncharacterized GPI-anchored protein At1g61900 precursor [Arabidopsis Thaliana] (GB:Q8GUI4;GB:O80696;GB:Q3ECK6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30700.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83923.1); similar to Os07g0102300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058682.1)|Identical to Uncharacterized GPI-anchored protein At1g61900 precursor [Arabidopsis Thaliana] (GB:Q8GUI4;GB:O80696;GB:Q3ECK6); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G30700.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83923.1) 0.184262749280364 1.81357442201065 0.105526802219523 1 2.21157588539595 15.2757823875754 0.184262749280364 0.109830662804507
AT4G16500_at 8.54911749167588 8.80590342802406 7.85225005421375 7.80362393654375 8.01313533284177 8.0823564489398 7.55945741384707 7.66741885910237 7.96840310307814 8.01926249085037 8.98669084576271 9.31477430287436 8.17756806973684 8.41725548794309 9.23499089014598 7.9724500223295 7.53938170242039 8.61076758966532 8.15712390240194 0.144859907917426 0.154482377409936 0.143273042484215 0.141945596892168 0.137556778021089 0.145603576312933 0.14433091938706 0.146264667029258 0.161073092153534 0.141779453291541 0.142175691987070 0.152034133441498 0.144478817316034 0.141916182867147 0.141295238292029 0.139029305639568 0.150260594332288 0.141699109937416 0.144554648063441 4 4 - 9301568 9301877 9301736.818 9301413 9302045 - gene protein_coding_gene FALSE TRUE AT4G16500.1 cysteine protease inhibitor family protein / cystatin family protein similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT5G47550.1); similar to cystatin domain containing protein [Brassica oleracea] (GB:ABD64972.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.137919421694357 1.81300318440234 0.105620470746395 1 2.21081306715969 16.3316568853002 0.137919421694357 0.0503796435906524
AT1G65660_at 8.30410785332218 8.38420618741029 8.60088589410149 8.43949381005248 8.90046321206396 8.46027455352144 8.54166111833059 8.37963427314678 8.53445852909683 8.43423956729255 7.8926596452807 7.90026748058212 8.04603908358386 8.12257281490563 7.67525722852938 8.2381367097547 7.96795908925832 7.87366761601364 8.50154548663386 0.135224498926744 0.135903360085162 0.144803116483046 0.136869128342080 0.134874410775342 0.150528976479497 0.135080508192416 0.135246004745059 0.139578723062917 0.131559049529006 0.143771742879941 0.140966520008673 0.131349152108464 0.143288250224853 0.141251239676054 0.137866942609055 0.136544378426976 0.138336869752820 0.135937795303647 1 1|0 -|/ 24421958 24422962 24422489.125 24421774 24424955 - gene protein_coding_gene FALSE TRUE AT1G65660.1 SMP1 (swellmap 1); nucleic acid binding Encodes a CCHC zinc finger protein that may function as a step II splicing factor. In an epigenetic allele of SMP1 (in which SMP1 and SMP2 mRNA is reduced) organs are smaller and contain fewer cells. similar to SMP2 (swellmap 2) [Arabidopsis thaliana] (TAIR:AT4G37120.1); similar to step II splicing factor SLU7 [Gallus gallus] (GB:NP_001006146.1); similar to Os08g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060905.1); contains domain Retrovirus zinc finger-like domains (SSF57756); contains domain STEP II SPLICING FACTOR SLU7 (PTHR12942); contains domain no description (G3D.4.10.60.10) -0.163817113235081 -1.81135447544270 0.105891255283312 1 2.20861194321640 16.7286664391585 -0.163817113235081 0.0869557758206458
AT4G00830_at 6.6509358864934 6.75937399995706 6.70446620014684 6.5792636804591 7.49991158919177 7.04735238963334 6.7212447219074 6.87416979317937 6.70906954823809 6.40735812028528 6.5831715163109 6.88470912065763 6.516673208442 6.92927943274286 6.33260908535187 6.78505304867575 6.96993176852328 6.333448513767 6.51832485455696 0.165789168530031 0.164264548697441 0.167242736171528 0.16978041485682 0.160863109955690 0.162512246440721 0.160957706253386 0.166209779119562 0.179930543980816 0.166690438059043 0.162152715244146 0.160653390702038 0.167516355159663 0.166025806986416 0.170598997036867 0.160092395988746 0.160092395988746 0.167000557026938 0.168633149487253 4 4|0 +|/ 354099 354827 354436.6 352023 355233 + gene protein_coding_gene FALSE TRUE AT4G00830.1|AT4G00830.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA binding [Arabidopsis thaliana] (TAIR:AT3G52660.2); similar to RNA-binding re (GB:ABD32695.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.164129659294464 1.80984905092591 0.106139075756295 1 2.20660279626911 13.4604782673722 0.164129659294464 0.087496274058117
AT2G02710_at 9.94446958118773 9.84030841376897 10.1676570655909 10.0571056911797 10.8877105329493 10.5178299542202 9.8391961840424 9.50423730773404 9.91053811662092 9.78285716001876 9.60619916222451 9.48084569977459 9.7807503639804 9.73795796316929 8.67394902923902 9.71918187862959 10.1318765380625 9.7165110339718 10.0022376890686 0.092589921455358 0.0921369968190838 0.098910867039916 0.0918033995627354 0.0977269265545508 0.0956758557570518 0.0919818416119676 0.09303970191392 0.0956255704996622 0.0947226083293068 0.095497557545547 0.0974393817771135 0.0955253465459647 0.0982234512129115 0.111605394598341 0.0925246115068625 0.0907948325485858 0.0960236784597167 0.0903697405377197 2 2|0 -|/ 758834 759753 759356.111 758692 761012 - gene protein_coding_gene FALSE TRUE AT2G02710.1|AT2G02710.2|AT2G02710.3 PAC motif-containing protein similar to PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE), kinase [Arabidopsis thaliana] (TAIR:AT5G58140.1); similar to Os01g0186200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042244.1); similar to putative phototropin [Oryza sativa (japonica cultivar-group)] (GB:BAD67804.1); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold-3; (InterPro:IPR013655); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.166443788015224 1.80973505176512 0.106157864260765 1 2.20645067906199 19.8470409816013 0.166443788015224 0.090267583048718
AT4G16650_at 4.37164515779028 4.90070279794718 3.94432246082346 4.04752445134399 4.78717297862373 4.8521805151364 4.98251553107264 5.40900906228553 4.56253967878541 4.82685631560918 4.80560136354137 5.33027939847068 4.82627520057615 4.50379954254205 5.07204556148835 4.61766140462184 4.94090098488687 4.77423205605353 4.82033698187593 0.236469777450638 0.240683291444284 0.229833809490116 0.234298272349767 0.232761466696732 0.233534782745849 0.230808867065277 0.236751643439171 0.234396657559028 0.235836629605147 0.236551245712838 0.232465353851373 0.232187161867357 0.23181042022951 0.237306314221691 0.234021084741446 0.237902407407225 0.232246082353936 0.236129857049691 4 4|0 +|/ 9375086 9375902 9375565.556 9372499 9376431 + gene protein_coding_gene FALSE TRUE AT4G16650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76270.1); similar to OSIGBa0122F23.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67151.1); similar to putative auxin-independent growth promoter [Oryza sativa (japonica cultivar-group)] (GB:BAD10226.1); similar to OSJNBa0010H02.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE01682.2); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.192948127763122 -1.80897414097991 0.106283351949844 1 2.20543543771709 9.45959766826762 -0.192948127763122 0.119479846173546
AT2G42390_at 8.74173636185951 9.10843667332953 8.78878446406236 8.81958243262747 9.07359438928583 8.77307033036643 8.4934863901576 8.40037646407695 8.52756267156086 8.15881089753403 8.64539353656314 8.49841969212286 8.5068609419632 8.69272965082015 8.45609051509366 8.55053782933362 8.18307239403532 8.63191020026323 8.44281401812999 0.124843953468279 0.125642998616917 0.128045107199934 0.124280531470421 0.135893434305059 0.128809563563006 0.135407985170469 0.12105356598942 0.148150813976874 0.132684557974626 0.124238533867895 0.126580824329381 0.134736245274804 0.135866057345902 0.130537771363300 0.124630643382916 0.132800051789084 0.130765524463653 0.125102685776801 2 2|0 -|/ 17658464 17659311 17658765.333 17658331 17659666 - gene protein_coding_gene FALSE TRUE AT2G42390.1 protein kinase C substrate, heavy chain-related similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT5G56360.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80506.1); contains domain LDL receptor-like module (SSF57424); contains domain N-LINKED OLIGOSACCHARIDE PROCESSING (PTHR12630); contains domain no description (G3D.4.10.400.10); contains domain GLUCOSIDASE II BETA SUBUNIT (PTHR12630:SF1) 0.160989957172867 1.80883554642252 0.106306223631418 1 2.20525053665091 17.2233947919371 0.160989957172867 0.083784518985041
AT1G15130_at 8.50676679057474 8.5588621423446 8.7784071889841 8.70717683041855 8.77813366425926 8.43163954194738 8.09700506321127 8.07840918408021 8.29536910329478 8.14136169951933 8.30386610001173 8.06788459864732 8.11848042706394 8.499365448851 7.98131761346204 8.26165120482437 7.86168526918836 8.30444911119017 8.31051309320188 0.110782935902886 0.110765391260171 0.112425453897583 0.110058896010248 0.114715821895236 0.110126869144451 0.112967575205566 0.112437044472668 0.120582712411676 0.109217460663460 0.110370599693975 0.112296791541697 0.108742842248533 0.110984314086420 0.113728957743249 0.110475315621997 0.115267381587739 0.119854686776971 0.108294457556376 1 1|0 -|/ 5206229 5206851 5206452.9 5205997 5209910 - gene protein_coding_gene FALSE TRUE AT1G15130.1 hydroxyproline-rich glycoprotein family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to Helix-turn-helix, Fis-type; BRO1 [Medicago truncatula] (GB:ABE92234.1); similar to ALG2-interacting protein X [Nicotiana tabacum] (GB:BAD15108.1); similar to Os10g0495300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064950.1); contains InterPro domain BRO1; (InterPro:IPR004328); contains InterPro domain t-snare; (InterPro:IPR010989) 0.144667342166244 1.80741494099000 0.106540926625944 1 2.20335560626997 16.7040094358909 0.144667342166244 0.0619602577915685
AT3G52960_at 9.47974043168273 9.85870134744024 8.53293092266668 8.84541381733202 8.5606182697151 9.02123893083905 9.36485683425621 10.3915808722441 9.80503688793149 10.0556090643223 10.2840916659255 10.6113197269498 10.1417491663469 10.3422295734828 10.7659472516908 10.3763639733894 9.76370731923112 10.3794240827193 9.78842305105175 0.158705879856264 0.151455805286794 0.165070896288600 0.173567644633131 0.165496455910101 0.166699980105798 0.156828678861586 0.154218837302834 0.152448877442171 0.158300016945573 0.149835392462464 0.147250245367380 0.148787630976888 0.153386284479036 0.160904277148899 0.152172421736708 0.155109082495441 0.148420702239681 0.150948531571487 3 3 + 19650887 19651279 19651070 19650646 19651597 + gene protein_coding_gene FALSE TRUE AT3G52960.1 peroxiredoxin type 2, putative similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os06g0625500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058113.1); similar to peroxiredoxin [Hyacinthus orientalis] (GB:AAS21026.1); similar to Os02g0192700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046165.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.291794146201248 -1.80685964862902 0.106632800418999 1 2.20261506667935 19.3649487263064 -0.291794146201248 0.212483404105715
AT3G05680_at 6.0287486631879 5.74354913876166 5.84718463540809 5.74209167886169 6.05504647202648 6.1613287625719 5.65482302093391 5.14398943859072 6.26322654031545 5.4063366539847 4.94191233856758 5.13805252209514 5.31655045301411 5.04428218215127 5.31287857253067 5.35099775730772 5.74329775773857 5.59290570765625 6.24337488896921 0.204491396057699 0.205566886684444 0.205107320275493 0.201116435385945 0.201089145222762 0.213389064524328 0.201089145222762 0.212001771417596 0.210622928988336 0.208911051408134 0.203915117352652 0.201296984748865 0.204762118735201 0.210847594568846 0.201089145222762 0.205890734800823 0.206531275302269 0.203561364638789 0.206125975056924 3 3 - 1661260 1661537 1661419.75 1660558 1671052 - gene protein_coding_gene FALSE TRUE AT3G05680.1 EMB2016 (EMBRYO DEFECTIVE 2016) similar to protein transporter [Arabidopsis thaliana] (TAIR:AT4G32760.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97029.1); similar to hypothetical protein MA4_111B14.30 [Musa acuminata] (GB:ABF71999.1); contains domain ARM repeat (SSF48371); contains domain FAMILY NOT NAMED (PTHR23185); contains domain gb def: ENSANGP00000015598 (Fragment) (PTHR23185:SF2) -0.178617188929314 -1.80627060800618 0.106730339127783 1 2.20182961808486 11.4351397375290 -0.178617188929314 0.104498392411759
AT3G52150_at 10.8638980505132 10.8216801756537 10.2023755224390 10.0878599690679 10.729111010374 10.6222155255818 11.0049586447403 10.9520946636745 10.8198630508008 11.1126890589947 11.2283366665285 11.5415858834571 11.0983612970293 11.1991815108361 11.7381134728025 11.3135170618368 10.6455960207192 11.0953565079623 11.0296998478545 0.0829784592186959 0.0808456879500907 0.0841736090886362 0.0873663064695065 0.0816542713413337 0.0865295593898771 0.081920371281369 0.080728581731918 0.0864554391130486 0.0805976029466954 0.0825879809729648 0.0819164313976736 0.0822196899418278 0.0817969507746495 0.0836056782337755 0.0808013768469935 0.0906801307443826 0.0838945291200941 0.0811621684786338 3 3|0 +|/ 19353255 19353849 19353463.222 19353002 19354444 + gene protein_coding_gene FALSE TRUE AT3G52150.1|AT3G52150.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to CP33 (PIGMENT DEFECTIVE 322), RNA binding [Arabidopsis thaliana] (TAIR:AT3G52380.1); similar to Plastid-specific 30S ribosomal protein 2, chloroplast precursor (PSRP-2) (GB:P82277); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.127589321674955 -1.80555039674685 0.10684971197562 1 2.20086939862490 21.7704858811871 -0.127589321674955 0.029529741803323
AT4G30480_at 7.47962349534525 7.7783046719972 7.88701746615339 7.73634688726547 7.8305209786964 7.73587876038939 7.50275122485313 7.2094815634899 6.92554064285742 6.96394270644043 7.00645129332286 7.10859837760113 6.55262732688995 6.81382273744717 7.18828311255536 7.17633099620073 7.16334533983425 6.49364339226925 6.89892806417473 0.204992139270618 0.202456815655561 0.208185997112953 0.204116521009112 0.198871305742848 0.218795950381864 0.198383251903222 0.206226931951005 0.209367771861527 0.201786686538317 0.201102951546961 0.200093728035884 0.198298232811688 0.208864041855622 0.200681337259339 0.209019273501283 0.209516824500163 0.203529097307843 0.205021550930378 4 4|0 +|/ 14897764 14898919 14898368.3 14897352 14899127 + gene protein_coding_gene FALSE TRUE AT4G30480.1|AT4G30480.2|AT4G30480.3 tetratricopeptide repeat (TPR)-containing protein similar to TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4), binding [Arabidopsis thaliana] (TAIR:AT3G58620.1); similar to putative tetratricopeptide repeat protein [Oryza sativa] (GB:AAL59042.1); similar to Os10g0486900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064904.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to putative tetratricopeptide repeat protein [Oryza sativa] (GB:AAL59042.1); similar to Os10g0486900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064904.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to putative tetratricopeptide repeat protein [Oryza sativa] (GB:AAL59042.1); similar to Os10g0486900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064904.1); contains domain no description (G3D.1.10.150.160); contains domain HEAT SHOCK PROTEIN 70 (HSP70)-INTERACTING PROTEIN (PTHR22904:SF9); contains domain TPR-like (SSF48452); contains domain CHAPERONE BINDING PROTEIN (PTHR22904) 0.156659067531178 1.80548228235031 0.106861008210729 1 2.20077859311677 14.5786697776101 0.156659067531178 0.0787115910383397
AT1G10900_at 8.79896915129138 8.98567061741199 9.68280371567693 9.68930729410017 9.88017175688452 9.67783638599134 10.2908758383819 10.0368565725783 9.1577666016135 9.84322217890114 9.7341103171923 9.466449226882 9.45635700733139 9.60673575051744 9.20521128769145 9.9347593073589 9.97883282876313 9.7813730480129 9.67033846866491 0.113154686035369 0.114876267077561 0.114365944014350 0.111846354559736 0.111158180070038 0.114742840799079 0.111158180070038 0.112468377720028 0.118853873864514 0.114048635511588 0.115731965090461 0.116227765437605 0.114078407040033 0.118937208767110 0.113795379552414 0.114264790399566 0.11310165947928 0.114960565751868 0.111233343929228 1 1 - 3632419 3633252 3632840 3632234 3637141 - gene protein_coding_gene FALSE TRUE AT1G10900.1 phosphatidylinositol-4-phosphate 5-kinase family protein Identical to Phosphatidylinositol-4-phosphate 5-kinase 7 (EC 2.7.1.68) (AtPIP5K7) (1-phosphatidylinositol-4-phosphate kinase 7) (PtdIns(4)P-5-kinase 7) (Diphosphoinositide kinase 7) (AtP5K2) (PIP5K7) [Arabidopsis Thaliana] (GB:Q9SUI2;GB:O04095); similar to PIP5K9 (PHOSPHATIDYL INOSITOL MONOPHOSPHATE 5 KINASE), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT3G09920.2); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to Os03g0701800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051005.1); similar to phosphatidylinositol-4-phosphate 5-kinase [Oryza sativa (japonica cultivar-group)] (GB:CAD27794.1); similar to Phosphatidylinositol-4-phosphate 5-kinase 1 precursor (1-phosphatidylinositol-4-phosphate kinase) (PIP5K) (PtdIns(4)P-5-kinase) (Diphosphoinositide kinase) (GB:Q6EX42); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) 0.146403128453094 1.80480917727649 0.106972697609778 1 2.19988132749887 19.2316052564288 0.146403128453094 0.064835507458538
AT3G17770_at 8.13156990430263 8.33984627491988 8.41234367701778 8.24678373052456 9.23549950962967 9.15735909939766 8.83032536918463 8.95145947669515 8.65076307643208 9.4129353337808 8.4555028505073 8.62385570915968 8.67958925817966 8.76611094103045 8.0341820219165 8.67074099909248 8.9476833734592 7.8448369336557 8.87444316423028 0.149125183565651 0.138270835918911 0.149091135909557 0.150547520094797 0.142691420449578 0.140352698248431 0.144573071894087 0.148120590741953 0.146036360163141 0.144112643684712 0.141672101980280 0.136139369970980 0.139177333512662 0.147093127544349 0.149136164952648 0.136139369970980 0.145405647162813 0.154746078530172 0.136660874763252 3 0|3 /|- 6082014 6082593 6082266.7 6081677 6086144 - gene protein_coding_gene FALSE TRUE AT3G17770.1 dihydroxyacetone kinase family protein similar to dihydroxyacetone kinase family protein [Arabidopsis thaliana] (TAIR:AT1G48430.1); similar to 3,4-dihydroxy-2-butanone kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM47307.1); similar to 3,4-dihydroxy-2-butanone kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98577.1); similar to Putative 3,4-dihydroxy-2-butanone kinase (GB:O04059); contains InterPro domain Dihydroxyacetone kinase; (InterPro:IPR012734); contains InterPro domain Dak phosphatase; (InterPro:IPR004007); contains InterPro domain Dak kinase; (InterPro:IPR004006) -0.138435758036209 -1.80469205441977 0.106992143170233 1 2.19972521331635 17.4042450230537 -0.138435758036209 0.0523668497231049
AT2G24290_at 5.87945276910063 5.38698446666125 4.86823597653019 4.59005912583256 6.30350238700046 5.72805108720069 5.75743306978373 5.6689462838234 4.84513647908 4.96502410385153 6.03805311254852 5.76961076912692 5.44195981689175 5.70793816100537 6.44249701808362 5.40789955127311 5.44097673812226 5.61617846888787 5.20735075230369 0.239249535635159 0.221228053396192 0.230246575423323 0.22649061925838 0.227230387042027 0.225299269478331 0.230293186140113 0.231484472380334 0.231538732427661 0.226927267481620 0.234901681490941 0.230494033128891 0.229865265410633 0.227257748637345 0.221892348802704 0.221228053396192 0.227938483302831 0.223952412892475 0.229366669425546 2 2 + 10345897 10346903 10346570.909 10345759 10347201 + gene protein_coding_gene FALSE TRUE AT2G24290.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G30996.1); similar to H0311C03.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67554.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) 0.213280044773040 1.80413369663037 0.107084891232913 1 2.19898102776105 10.8923213038604 0.213280044773040 0.140471093903114
AT2G41560_at 9.68906834454866 9.734337420459 9.1927188031249 9.06443214200983 9.44732559613788 9.49364004033376 9.217585461062 9.35408957129142 9.7730565843565 9.78168084289947 9.80851466430302 9.9463756998572 9.75939341164618 9.7091249370907 9.72877095661867 9.77099848490983 9.41080777490792 9.18558761453065 9.61795535730403 0.0933661043741054 0.0911916438541149 0.0954918700343227 0.098193677545495 0.0973097338796787 0.0986084008979708 0.105909976388837 0.0972193708723027 0.105397669696850 0.0913533397879607 0.09736928341277 0.0932431479788006 0.0934926119994127 0.0997919009432996 0.0966525011458301 0.0940167185563392 0.0986940653773926 0.105925944298249 0.0944780244583949 2 2 - 17339376 17339922 17339650.182 17339162 17344347 - gene protein_coding_gene FALSE TRUE AT2G41560.1 ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4); calcium-transporting ATPase/ calmodulin binding encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole. Identical to Calcium-transporting ATPase 4, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 4) (ACA4) [Arabidopsis Thaliana] (GB:O22218); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17949.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL73984.1); similar to calmodulin-stimulated calcium-ATPase [Brassica oleracea] (GB:CAA68234.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.129262644571162 -1.80323416545915 0.107234469717772 1 2.19778231357745 19.0937384829558 -0.129262644571162 0.0343002710373328
AT2G38560_at 7.04588419387625 7.30528366989439 6.87512131750751 6.96866563085747 7.36729316152479 6.68184229970103 7.11551022507558 7.44738734424493 6.9767874289535 6.67925637135488 6.21830585079245 6.64666019796279 7.04230237656463 6.86823637987727 6.77424987918621 6.67436158307545 6.21679467523069 5.93253773616909 6.49524532578652 0.206027288172232 0.214086110894625 0.207425257453750 0.205004748866884 0.205247831009158 0.205147814660815 0.203779255730458 0.206837609793782 0.209745716158553 0.206564186610114 0.205011539297979 0.202850259457801 0.211027532680988 0.200814789420597 0.206366307265340 0.201959088663934 0.217721955618071 0.210013693825855 0.207418295929837 2 2 + 16142840 16143290 16143094.909 16141716 16143773 + gene protein_coding_gene FALSE TRUE AT2G38560.1 transcription factor S-II (TFIIS) domain-containing protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G42730.1); similar to putative transcription elongation factor, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAR01752.1); similar to Os03g0815900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051687.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Transcription elongation factor S-II; (InterPro:IPR006289); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990); contains InterPro domain Zinc finger TFIIS-type 2; (InterPro:IPR013138); contains InterPro domain Transcription elongation factor S-II, N-terminal; (InterPro:IPR003617); contains InterPro domain Transcription factor TFIIS; (InterPro:IPR001222) -0.212850523191366 -1.80313145517756 0.107251561345438 1 2.19764545698970 13.7327622104464 -0.212850523191366 0.140166151671784
AT1G48350_at 11.0386174758119 10.8889393398687 10.2781298755542 10.2050109488181 10.6809076348225 10.5889773560529 10.7023548348203 10.8099220999582 11.0051171623568 11.1136710932847 11.3037416061435 11.6000920338380 10.9365404369188 10.9814145834377 11.9655173962653 11.1466133462073 10.5715127225748 11.1214461540697 11.0106665862282 0.0659219969904392 0.0655731787702929 0.0655731787702929 0.0658194132749326 0.0669626334877314 0.0725794717964817 0.0674785131124552 0.0669371115320418 0.0757494705879692 0.0675015476472633 0.0655731787702929 0.0655731787702929 0.0663632944202832 0.0696570443065178 0.0681951234722473 0.0655731787702929 0.075492268504002 0.0699380709023385 0.0695055910833828 1 1|0 +|/ 17870948 17871851 17871244.5 17870873 17872010 + gene protein_coding_gene FALSE TRUE AT1G48350.1 ribosomal protein L18 family protein Identical to 50S ribosomal protein L18, chloroplast precursor (CL18) (RPL18) [Arabidopsis Thaliana] (GB:Q9SX68); similar to ribosomal protein L18 family protein [Arabidopsis thaliana] (TAIR:AT1G14205.1); similar to Os03g0828100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051775.1); similar to 50S ribosomal protein L18, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99674.1); contains InterPro domain Ribosomal protein L18; (InterPro:IPR004389); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484) -0.130746906413783 -1.80283070520297 0.107301622694726 1 2.19724473959534 21.7723631451575 -0.130746906413783 0.0378241499570156
AT1G05270_at 6.18943010947053 5.67396726605362 5.82125727465881 5.57204054095968 5.23699233519198 5.97050396506547 5.3731123794995 5.46340636790092 5.04213481547613 4.25955624790101 4.82028579251923 4.73671288296096 5.17436296555948 5.24082849032766 5.36713445465575 5.0797234401168 5.15970086569061 4.57313215171239 4.26968881001575 0.244018963823181 0.246251357063863 0.241051932002085 0.244678928767414 0.249902500843603 0.256277831764277 0.240520244148479 0.248246616644481 0.244806754545558 0.240499335116472 0.247065361652834 0.240499335116472 0.240499335116472 0.248069903399064 0.241345732870988 0.241747345278027 0.249271978076312 0.246017370618602 0.240499335116472 1 1 - 1533946 1534245 1534099.5 1531640 1534389 - gene protein_coding_gene FALSE TRUE AT1G05270.1 TraB family protein similar to TraB family protein [Arabidopsis thaliana] (TAIR:AT2G32340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT93860.1); similar to Os05g0499500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055957.1); contains InterPro domain TraB determinant; (InterPro:IPR002816) 0.235205668774867 1.80164338356121 0.107499472385971 1 2.19566301770188 10.4339779906370 0.235205668774867 0.161785587003247
AT1G12140_at 9.45818690810966 9.3595583410686 9.76777373546043 9.80579616581783 9.52014738661014 9.36022604053507 9.79460592454644 9.58876926848487 9.6109756939735 9.45175015576492 9.56453379018618 9.4612531393081 9.58769796198316 9.693945079468 9.3929773670029 9.98350591003271 10.0936389285328 9.89368320587453 9.43718704421638 0.0897240444028616 0.0933817348998447 0.0937442252331957 0.0960838373914036 0.0939284591555605 0.09954478872378 0.0928148901789359 0.0950872680876878 0.099485131708499 0.0955273382174266 0.099809061404013 0.09286743350644 0.0938229001014042 0.0932055845285406 0.0935515173109425 0.092284317653718 0.0941492793350567 0.0976628427715435 0.0962888931924687 1 1|0 +|/ 4122806 4123329 4123062.2 4121367 4123540 + gene protein_coding_gene FALSE TRUE AT1G12140.1|AT1G12140.2 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62570.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62560.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62540.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.136069589850215 1.80123507064145 0.107567590709774 1 2.19511916811901 19.1863206650542 0.136069589850215 0.0486763319345984
AT2G04630_at 8.20311054807702 8.31035574235015 8.64766971644276 8.6581499307038 8.63826838843476 7.9757993252607 8.50979321930975 8.25847442060588 7.53648717780924 7.88356819908479 8.30149186638629 8.16633057253145 7.91852334317307 8.00389545807524 8.38529417977072 8.3793697967882 7.99549050053196 7.47476324137771 8.1138911240117 0.172734935869721 0.174806669013607 0.169728228350771 0.170790584152523 0.165405473181518 0.199528701654874 0.167348988358275 0.171172085408809 0.197796863276238 0.175720471400489 0.174659630041703 0.169878636263356 0.17802828613185 0.172696463354468 0.167447769551463 0.177787498629691 0.195939293862383 0.218108847129303 0.168594239864202 2 2|0 -|/ 1619171 1620219 1619534.5 1618933 1620333 - gene protein_coding_gene FALSE TRUE AT2G04630.1 DNA-directed RNA polymerase II, putative similar to DNA-directed RNA polymerase II, putative [Arabidopsis thaliana] (TAIR:AT5G51940.1); similar to Os07g0463100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059582.1); similar to Os03g0586600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050570.1); similar to DNA-directed RNA polymerase IIa [Nicotiana tabacum] (GB:AAD34613.1); contains InterPro domain DNA-directed RNA polymerase, 14 to 18 kDa subunit; (InterPro:IPR006111); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain RNA polymerase subunit, RPB6/omega; (InterPro:IPR012293); contains InterPro domain RNA polymerase Rpb6; (InterPro:IPR006110) 0.196517196909447 1.80117750960244 0.107577196797478 1 2.19504250401363 16.3615995131304 0.196517196909447 0.124025727081083
AT3G61430_at 11.9679723981680 12.2251330667958 12.6835685495831 12.7954489564185 12.9083178219339 12.8137428816249 13.1439320751105 13.2865841161858 12.7865946307900 12.8596176735549 13.0082068057274 12.7508938955948 13.1235566141357 12.9064201466670 12.6461326805154 12.8676597802015 13.0961547515718 13.0500281042835 12.735358337162 0.0759288722004285 0.0724729530961708 0.0733082008323299 0.0737353156294722 0.0722528347430152 0.0758842563028973 0.0744387223857164 0.0707327106086494 0.0807383030934962 0.0722827683374597 0.0731854447319987 0.0709348165750166 0.0722990753259176 0.075645082030476 0.0761744143940184 0.0707327106086494 0.0750294710000718 0.0714651695461926 0.0717998608721061 3 3|0 +|/ 22744924 22746030 22745463.1 22744284 22746310 + gene protein_coding_gene FALSE TRUE AT3G61430.1|AT3G61430.2 PIP1A (plasma membrane intrinsic protein 1;1); water channel|PIP1A (plasma membrane intrinsic protein 1;1) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. Identical to Aquaporin PIP1.1 (Plasma membrane intrinsic protein 1a) (PIP1a) (Aquaporin 1) (Plasma membrane aquaporin 1) (PIP1.1) [Arabidopsis Thaliana] (GB:P61837;GB:P43285;GB:Q8L9H0;GB:Q9LDT6); similar to PIP1B (plasma membrane intrinsic protein 1,2), water channel [Arabidopsis thaliana] (TAIR:AT2G45960.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.140819427579964 1.80038708070622 0.107709189061459 1 2.19398984972961 25.5905817221473 0.140819427579964 0.0568565189621526
AT4G26640_at 7.9430902366355 7.90462657268146 7.88945670577216 8.07210713293854 7.86550339824053 7.9644913570717 7.95409811651994 8.09219612321742 8.05614770575786 7.87452406894133 7.86708508627914 7.72255745374844 7.74792216105614 7.62836229731838 7.65823681508521 7.7422405889617 7.46166298804766 7.59656970571372 7.8259749955655 0.182889331040425 0.172663984551103 0.175318952438897 0.174478271507503 0.175620691761735 0.183729055803722 0.1687750578023 0.179817667327609 0.189339382859751 0.172460036828269 0.171905947241583 0.168606981789279 0.167023173546498 0.173431658157443 0.170867661304279 0.169904798004662 0.180812547305862 0.180752030990743 0.172208651669212 4 4|0 -|/ 13437338 13438122 13437607.4 13437077 13440829 - gene protein_coding_gene FALSE TRUE AT4G26640.1|AT4G26640.2 WRKY20 (WRKY DNA-binding protein 20); transcription factor member of WRKY Transcription Factor; Group I Identical to Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20) (WRKY20) [Arabidopsis Thaliana] (GB:Q93WV0;GB:Q8H1E9;GB:Q94AP6;GB:Q9SUA0); similar to WRKY2 (WRKY DNA-binding protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56270.1); similar to putative WRKY-type DNA binding protein [Glycine max] (GB:AAP85545.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657)|Identical to Probable WRKY transcription factor 20 (WRKY DNA-binding protein 20) (WRKY20) [Arabidopsis Thaliana] (GB:Q93WV0;GB:Q8H1E9;GB:Q94AP6;GB:Q9SUA0); similar to WRKY2 (WRKY DNA-binding protein 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G56270.1); similar to DNA-binding WRKY [Medicago truncatula] (GB:ABE81459.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.133207866743220 -1.79831405482000 0.108056081116447 1 2.19122996653959 15.7591771522752 -0.133207866743220 0.043680556062249
AT4G09630_at 5.01509184974164 5.45924571077638 4.73651847933965 5.12188899896763 5.55086918127708 5.15209709653037 5.963198176304 5.41397669272352 4.94039639346976 5.43599223563697 5.22704985012293 5.70441143771964 5.10357862639366 5.44354318787556 5.19709806892357 5.01552137666637 4.45364362786198 5.04431375930708 5.46992865858036 0.256824116377870 0.251418449196260 0.265508973776622 0.25445096527144 0.251418449196260 0.279000308446596 0.266184132481042 0.256054327856287 0.266817744554892 0.258269945600056 0.253510459883290 0.251418449196260 0.256406825892459 0.258487209789947 0.255430459430067 0.251418449196260 0.262430773118963 0.253311761219952 0.261045578526634 4 4|0 +|/ 6086325 6087502 6086908.5 6083710 6088131 + gene protein_coding_gene FALSE TRUE AT4G09630.1 similar to EMB2756 (EMBRYO DEFECTIVE 2756), hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Arabidopsis thaliana] (TAIR:AT1G34550.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91928.2); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) -0.227997719530607 -1.79799315129621 0.108109873324751 1 2.19080285065972 10.5169861504181 -0.227997719530607 0.155407183476357
AT2G26170_at 5.74740816178005 6.45713672476084 7.66622062375053 7.60691671411106 5.34337722720556 5.06117979208983 7.2356479725108 6.74189839505894 5.08988105502706 6.3166218475035 5.25134352589637 5.51173798084077 5.52006159900975 4.94687562072051 3.80118230228357 5.84030301963446 6.93798578309154 5.82884547133507 5.96159393118909 0.220274932117488 0.216067772195413 0.214036104475236 0.212771231957118 0.214097082060428 0.219625831173714 0.214189285965909 0.220023741818068 0.221616473521688 0.223457777940280 0.212771231957118 0.219227486427849 0.218698695880718 0.219993582300812 0.212941055305995 0.213855761108330 0.221292666403636 0.22181062415127 0.220927613648242 2 2 + 11149623 11150239 11149976.818 11147887 11150438 + gene protein_coding_gene FALSE TRUE AT2G26170.1|AT2G26170.2 CYP711A1 (MORE AXILLARY BRANCHES 1); oxygen binding Encodes a protein with similarity to thromboxane-A synthase, member of the CYP711A cytochrome P450 family. MAX1 is a specific repressor of vegetative axillary buds generated by the axillary meristem. Expressed in vascular traces in the rosette stem and axillary buds throughout plant development. Mutants have increased axillary branches. Along with MAX3,4 thought to mediate control of shoot branching via synthesis of a signal molecule which is transported over long distance mediated by MAX2. cDNA supports the existence of the longer transcript predicted for this locus, no cDNA isolated for shorter transcript. MAX1 downregulates 11 genes involved in flavonoid pathway (CHS, CHI, F3H, F3'H, FLS, DFR, ANS, UFGT, RT, AAC and GST). similar to CYP71B11 (cytochrome P450, family 71, subfamily B, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G25120.1); similar to cytochrome P450 monooxygenase CYP711A12 [Medicago truncatula] (GB:ABC59098.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE86253.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128)|similar to CYP81D3 (cytochrome P450, family 81, subfamily D, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G37340.1); similar to cytochrome P450 monooxygenase CYP711A12 [Medicago truncatula] (GB:ABC59098.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE86253.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.230336461313393 -1.79724344298931 0.108235642721850 1 2.18980512269581 12.1045519634541 -0.230336461313393 0.157722558371022
AT3G52610_at 5.8380832359119 6.2573745758213 5.48630115798665 5.97725100747222 6.54126785169086 6.14311802791616 6.59008870725309 6.6753787366851 6.01261070244918 5.81135114132126 5.37544776910171 5.58450615181364 5.89241068908419 5.96261573219195 5.33234151559454 5.87928819287016 5.89128407542073 5.23526181809042 5.42291864820272 0.256578816367682 0.263806376659466 0.274704287198516 0.269936426088306 0.262406354104636 0.284267532020761 0.267599471846009 0.263581724648373 0.270769948763430 0.267775231768107 0.256578816367682 0.256578816367682 0.258922080324723 0.27921467990617 0.266857359689713 0.256578816367682 0.290235206512043 0.263332035676992 0.272337884725334 3 3|0 +|/ 19522690 19523433 19523089.1 19521424 19523636 + gene protein_coding_gene FALSE TRUE AT3G52610.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32680.1); contains domain CoA-dependent acyltransferases (SSF52777) -0.204031236810755 -1.7972369969354 0.108236724691539 1 2.18979654486611 11.8851602410981 -0.204031236810755 0.132093504976120
AT4G01690_at 10.4811470495351 10.4463354363196 10.1517568757000 9.98228596741665 10.3834146155399 10.1878355718196 10.57269577353 10.4881273112726 10.9841028546731 10.8145202986376 10.9956481931305 11.0084091038277 10.6977280459020 10.9226889637338 11.1026190082894 10.9921656411348 10.4196539594603 10.7591996358382 10.6366471877142 0.091626722412407 0.0856851070665115 0.088530177749301 0.090720445667268 0.0916214863075344 0.0900314116468898 0.0890329463673592 0.0924094295896425 0.0924924258105635 0.0853092011346087 0.0853092011346087 0.0854569202636606 0.0853092011346087 0.0883007267632893 0.088807841943131 0.087242687132942 0.097067427125713 0.0881968692148478 0.0867837128978334 4 4|0 +|/ 731598 732279 731967 729887 732433 + gene protein_coding_gene FALSE TRUE AT4G01690.1|AT4G01690.2 PPOX (PROTOPORPHYRINOGEN OXIDASE); protoporphyrinogen oxidase|PPOX (PROTOPORPHYRINOGEN OXIDASE) Encodes protoporphyrinogen oxidase (PPOX). Identical to Protoporphyrinogen oxidase, chloroplast precursor (EC 1.3.3.4) (PPO) (PPOX) [Arabidopsis Thaliana] (GB:P55826;GB:Q94F25;GB:Q9ZSI5); similar to HEMG2/MEE61 (maternal effect embryo arrest 61), oxidoreductase/ protoporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT5G14220.1); similar to protoporphyrinogen oxidase PX-1 [Nicotiana tabacum] (GB:AAD02290.1); similar to plastidal protoporphyrinogen oxidase [Nicotiana tabacum] (GB:BAA34713.1); similar to Protoporphyrinogen oxidase, chloroplast precursor (PPO I) (Protoporphyrinogen IX oxidase isozyme I) (PPX I) (GB:O24163); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937); contains InterPro domain Protoporphyrinogen oxidase; (InterPro:IPR004572) -0.135122923236174 -1.79721652342441 0.108240161236090 1 2.18976930063732 21.1737102497698 -0.135122923236174 0.0474987686156754
AT4G14240_at 6.06581272433165 6.38050717687043 6.77633615393562 6.71875530421879 6.81044266842918 6.5262842762829 7.74348996276601 7.89345801630386 6.9999408219165 7.13631515829467 7.18699185281501 7.04996605945124 6.69652690509662 7.07065990078628 6.8027670816449 7.17860677629701 7.17956595999328 6.82582116626335 6.85618211105143 0.198609117939049 0.188350735089146 0.185740884565846 0.185875232778900 0.180707813719419 0.19951956855443 0.187302878551838 0.196483021098495 0.194065255611013 0.185549177269810 0.188851334572282 0.186556608475010 0.186511059660539 0.185410249845404 0.191845933076507 0.180707813719419 0.189651115250140 0.185195219072753 0.184386267893322 4 4 - 8204718 8205396 8205129.2 8204342 8207403 - gene protein_coding_gene FALSE TRUE AT4G14240.1|AT4G14240.2 similar to CBS domain-containing protein-related [Arabidopsis thaliana] (TAIR:AT4G14230.1); similar to Os05g0395300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055462.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT07635.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) -0.155739260156053 -1.79708168859459 0.108262796248246 1 2.18958987817312 13.8625570736661 -0.155739260156053 0.0784654657757507
AT1G13470_at 9.3115423203714 9.50959428437332 10.2225119684912 9.92418262506784 8.48142053973921 7.77653105527637 3.63171646221014 3.55587174915455 7.84222889191921 5.34515581433526 2.94497356506353 3.73057968813197 4.10993734829834 4.18064036945116 2.51278669793069 2.97155654793142 3.78906161747773 3.17737180023952 6.14702378703327 0.431300900975791 0.435844760139673 0.437899255250357 0.435676632499371 0.436456788797905 0.425880111610582 0.410399000773038 0.416889716158158 0.420862802259215 0.410399000773038 0.415202344006465 0.411514286944541 0.410399000773038 0.410399000773038 0.432520534857946 0.425199292552144 0.411593857764604 0.416753576705374 0.414934994395038 1 1 - 4620397 4620864 4620640.182 4620225 4621577 - gene protein_coding_gene FALSE TRUE AT1G13470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13520.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99699.1); contains InterPro domain Protein of unknown function DUF1262; (InterPro:IPR010683) -0.209354516832036 -1.79681796039713 0.108307081683816 1 2.18923895493755 12.7376295182912 -0.209354516832036 0.137450139719937
AT2G14890_at 6.82179237130915 7.49625186079947 5.0966232364612 5.47505442898372 5.55337156165325 5.96467099802859 6.68874575159193 7.83914392903857 7.72356939155312 7.31574749903888 8.98029949365671 9.50091278443117 8.69540880871702 8.51019696996751 9.71962044583977 8.56382897650175 7.7230837061497 8.64851172946436 8.27055297865406 0.203079734756993 0.197950088395824 0.202219481775832 0.204443893652398 0.208645408171019 0.211842811467126 0.207346935935103 0.193550516754647 0.215081073516170 0.196939803726893 0.194521324825716 0.195689784160573 0.198051919288954 0.209488829707349 0.204573880957893 0.195054842476923 0.202418809175931 0.197616630910168 0.201923691481307 2 2|0 +|/ 6406765 6407813 6407394.556 6406703 6408083 + gene protein_coding_gene FALSE TRUE AT2G14890.1|AT2G14890.2 AGP9 (ARABINOGALACTAN PROTEIN 9) putative proline-rich protein (At2g14890) mRNA, complete Identical to Classical arabinogalactan protein 9 precursor (AGP9) [Arabidopsis Thaliana] (GB:Q9C5S0;GB:O82327); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to proline-rich cell wall protein (GB:AAA79364.1); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Glutelin; (InterPro:IPR000480) -0.333138590322053 -1.79626581421305 0.108399853434925 1 2.18850432203538 14.6483015109447 -0.333138590322053 0.250223457841191
AT2G21410_at 8.08133900060151 8.08673576420814 7.86728032842586 8.3971033251818 8.46315942047719 8.06112696063965 8.48301146034147 8.29018324760468 7.71055219602053 7.90479903562984 8.33102822906341 8.38153837244534 8.24106982750086 8.54590272652264 8.28871761874466 8.31746851597673 7.556602259034 8.12115126078513 7.78768833873717 0.171343386356686 0.172602045919457 0.181608479285160 0.173506767310575 0.170751071182242 0.188071683222732 0.179328048973863 0.175565134956682 0.187208626196839 0.172656905814714 0.173403403809229 0.171310940743811 0.175781963796127 0.169424729094915 0.167611779450081 0.173408428576339 0.199684554072409 0.17917463645418 0.179010629387617 2 2|0 +|/ 9174176 9175187 9174794.667 9169700 9175532 + gene protein_coding_gene FALSE TRUE AT2G21410.1 (VACUOLAR PROTON ATPASE A2); ATPase Vacuolar proton ATPase subunit VHA-a isoform 2. Localized in the tonoplast. similar to VHA-A1 (VACUOLAR PROTON ATPASE A 1), ATPase [Arabidopsis thaliana] (TAIR:AT2G28520.1); similar to VHA-A3 (VACUOLAR PROTON ATPASE A3), ATPase [Arabidopsis thaliana] (TAIR:AT4G39080.1); similar to V-type ATPase, 116 kDa subunit [Medicago truncatula] (GB:ABE88373.1); similar to putative vacuolar ATPase subunit 100 kDa subunit [Mesembryanthemum crystallinum] (GB:CAD27718.1); similar to vacuolar proton-ATPase subunit-like protein [Lotus japonicus] (GB:CAE45587.1); contains InterPro domain ATPase, V0/A0 complex, 116-kDa subunit; (InterPro:IPR002490) 0.191885900811045 1.79577754744319 0.108481954150460 1 2.18785475591335 16.2282164591292 0.191885900811045 0.119840117452557
AT1G02750_at 6.61494911584129 7.14344530589745 7.32886743732935 7.38390675773731 7.54746264957992 7.16747486714229 6.97700126202519 6.92874155301902 5.24850159508638 5.20223400235795 5.3610001700787 5.22986982343647 5.68487101209105 5.57915794232030 4.71996301591852 5.44938815237201 5.826351746347 4.50443700605685 5.64082128932376 0.250176960525594 0.249136381245429 0.238269682153073 0.24958248270618 0.244707063819485 0.245727281458576 0.241586440423466 0.246148451599217 0.262882784186593 0.246345939970631 0.249596878510708 0.238961411002158 0.241616410166687 0.247492703085219 0.244538626963164 0.235347464504962 0.250621161946491 0.241107069087970 0.235347464504962 1 1|0 +|/ 602682 604085 603605.1 602497 604292 + gene protein_coding_gene FALSE TRUE AT1G02750.1 similar to drought-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G02200.1); similar to fiber protein Fb2 [Gossypium barbadense] (GB:AAN77145.1); contains InterPro domain Drought induced 19; (InterPro:IPR008598) 0.185710590869867 1.79553634563656 0.108522533056892 1 2.18753389885412 12.4655971956550 0.185710590869867 0.113355066881908
AT2G42160_at 4.74279245937202 4.96341675873027 5.18860972188123 5.7180937202856 5.61863235804466 5.24690065726027 5.08343157619872 5.10164754718183 4.56595419161878 5.19525340420705 4.95993695144573 5.05089426916179 4.65909145662892 5.09890411661722 4.48128333180204 5.40683917423697 4.60102610997791 4.80501551430068 5.15633679230734 0.275355747072475 0.270239744170303 0.276848969111042 0.275384938542223 0.269675316665562 0.282198884182749 0.277005582617504 0.277228203039268 0.269057991778822 0.271987633403383 0.26911547578897 0.268505181496173 0.274942160632985 0.269861795080140 0.288816983310084 0.275462580512627 0.276472430811461 0.278698663128859 0.278956404209412 2 2|0 -|/ 17581949 17582918 17582440.429 17581719 17584541 - gene protein_coding_gene FALSE TRUE AT2G42160.1 zinc finger (ubiquitin-hydrolase) domain-containing protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT2G26000.2); similar to H0821G03.13 [Oryza sativa (indica cultivar-group)] (GB:CAJ86062.1); similar to Os04g0648500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054075.1); contains InterPro domain BRCA1-associated 2; (InterPro:IPR011422); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, UBP-type; (InterPro:IPR001607); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.190298049237124 1.79442800345604 0.108709179260914 1 2.18605975524419 10.1356349306522 0.190298049237124 0.118329999008620
AT1G32630_at 5.43279882751823 5.31576867203565 5.69169574030651 5.03590712276137 5.79399943989525 5.71265387836439 5.25596517239488 5.12544480930955 4.82380637361853 4.84310864918636 5.27431606927291 4.98568442716573 5.03419395200853 4.85752721318235 4.4290286608229 4.86623590646919 5.37078359641006 4.62308374781299 4.81100099707998 0.198045276835492 0.193014641535634 0.187928552335146 0.187928552335146 0.195416613983768 0.191552651453020 0.193303506367049 0.196471356897002 0.193305074342850 0.187928552335146 0.188662054673859 0.187928552335146 0.192110097544266 0.191112830777234 0.200746545861216 0.188773621330916 0.196397459148133 0.191208346563068 0.195913716063887 1 1 + 11797972 11798274 11798129.364 11797315 11798582 + gene protein_coding_gene FALSE TRUE AT1G32630.1 unknown protein 0.190102182516048 1.79273706647067 0.108994514293838 1 2.18381143560015 10.2985685594589 0.190102182516048 0.118312631935340
AT4G13770_at 12.3429375142375 12.4194975276562 11.9873172232646 12.0075035108483 12.1908985079589 12.1057136723084 12.5242443818451 12.7012305849778 11.7048183212636 12.7090262168779 12.4828360946244 12.0968843192836 12.2769775800545 12.5084987478250 12.0494090803618 12.2918473890069 12.4411496075331 12.5475282374305 12.1007202936633 0.0749790698473237 0.0728880744662916 0.0720550945467217 0.0725374657900188 0.0719423011367475 0.0743646359870188 0.071854153681818 0.0722996938185168 0.0786161332040523 0.0710389250993138 0.0751040899222699 0.0730355015579764 0.0704423014255376 0.0711312407972539 0.0744291360193032 0.073900603829988 0.0734160970013264 0.0734186558798694 0.0704288345212324 4 4 - 7990700 7991127 7990910.636 7990481 7992305 - gene protein_coding_gene FALSE TRUE AT4G13770.1 CYP83A1 (CYTOCHROME P450 83A1); oxygen binding Encodes a cytochrome p450 enzyme that catalyzes the initial conversion of aldoximes to thiohydroximates in the synthesis of glucosinolates not derived from tryptophan. Also has a role in auxin homeostasis. Identical to Cytochrome P450 83A1 (EC 1.14.-.-) (CYPLXXXIII) (CYP83A1) [Arabidopsis Thaliana] (GB:P48421;GB:O24429); similar to CYP83B1 (CYTOCHROME P450 MONOOXYGENASE 83B1), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G31500.1); similar to cytochrome p450 dependent monooxygenase (GB:AAA79982.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.129374751085384 -1.79102086458136 0.109284829346335 1 2.18153039047384 24.5391243616954 -0.129374751085384 0.0366489960899384
AT3G04560_at 6.89449196096848 7.31858483740876 6.53526852595962 6.78999432648414 6.87425076023123 7.49484591989372 6.67944914989612 6.83417252442391 6.61138280532054 5.98740279307064 6.18345251066995 5.73535401589388 6.06142197484909 5.5802803614639 5.6559795163876 6.06019922029448 6.23679848054934 5.79070330557809 6.38300208926232 0.20848311996097 0.219558786535817 0.209292433861094 0.220720075296662 0.20848311996097 0.220300412554563 0.216179903312210 0.217259825714189 0.224209200029794 0.215160476602794 0.212139105998693 0.20848311996097 0.216462263215497 0.224638515642487 0.208604460866816 0.210067981391206 0.222857098221798 0.218646514186014 0.211066730442673 3 3|0 -|/ 1227518 1228190 1227876.9 1227366 1229414 - gene protein_coding_gene FALSE TRUE AT3G04560.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53385.1); similar to Os02g0820600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048544.1) -0.211161812186257 -1.79084891204613 0.109313956924917 1 2.1813018924891 13.0477753685392 -0.211161812186257 0.139930258627990
AT3G23920_at 9.74588140930018 9.89490059301206 10.4129667893199 10.4738818400988 10.1421300892968 10.1321024768486 10.6934689182916 10.6558156024499 9.81465541347187 10.1866638209595 9.61239887489246 9.2080047972816 9.64622338323192 9.47469867457922 9.21805554012689 10.0597003002994 10.1519390168185 9.68400252223573 9.77994779908212 0.0715218851111706 0.0690387937210236 0.0744307334234302 0.0707739031672999 0.0699522756658494 0.0708414424516649 0.0705237254105593 0.0708806051765177 0.0736930341643124 0.0709902649642642 0.0690640378616267 0.071697465448867 0.069085258999592 0.0725540881221309 0.0693749897129752 0.0690387937210236 0.0749903340143727 0.06929292576384 0.0765797645014766 3 3 + 8643653 8644177 8643867.818 8641576 8644456 + gene protein_coding_gene FALSE TRUE AT3G23920.1 BMY7/TR-BAMY (beta-amylase 7); beta-amylase similar to CT-BMY (BETA-AMYLASE 8), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G17090.1); similar to beta-amylase 1 [Nicotiana langsdorffii x Nicotiana sanderae] (GB:AAY89374.1); similar to putative chloroplast-targeted beta-amylase [Brassica napus] (GB:AAL37169.1); similar to Os03g0141200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048926.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.126228727180181 -1.79060174439221 0.109355838154839 1 2.18097346080793 20.0483769147544 -0.126228727180181 0.0286642918970592
AT4G03280_at 13.6050223652793 13.6758090305735 13.4915396941608 13.5110484005707 13.4618253541111 13.5128672845586 13.8805205157983 14.1139063606122 14.3050014786511 14.2370687053811 14.4121896129787 14.3561172196584 14.1971633930717 14.1618726424599 14.3540932820587 14.3319293370579 13.9519417077151 14.4762278316331 14.1191911622247 0.0557010715878764 0.054420372459976 0.0545228342041392 0.0559334597525067 0.0552277584185361 0.0584810226519726 0.0604569551720911 0.0548720426804729 0.0604938705527845 0.054972248598148 0.0558935479933603 0.0538381703113911 0.0587804294211587 0.0628173066785731 0.0578574495057374 0.0538381703113911 0.0622114793858406 0.0578300601432002 0.0546629192901148 4 4 + 1440550 1441682 1441287.727 1440146 1441863 + gene protein_coding_gene FALSE TRUE AT4G03280.1|AT4G03280.2 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) Encodes the Rieske FeS center of cytochrome b6f complex. Gene is expressed in shoot but not in root. Mutant has reduced electron transport at saturating light intensities and Q-cycle activity is hypersensitive to acidification of the thylakoid lumen. Identical to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) (Proton gradient regulation protein 1) (petC) [Arabidopsis Thaliana] (GB:Q9ZR03;GB:Q94EI4;GB:Q9FYB6); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13430.1); similar to Cytochrome b6-f complex iron-sulfur subunit 2, chloroplast precursor (Rieske iron-sulfur protein 2) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein 2) (ISP 2) (RISP 2) (GB:Q02585); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Rieske iron-sulfur protein; (InterPro:IPR005805)|Identical to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (EC 1.10.99.1) (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) (Proton gradient regulation protein 1) (petC) [Arabidopsis Thaliana] (GB:Q9ZR03;GB:Q94EI4;GB:Q9FYB6); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13440.1); similar to ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative [Arabidopsis thaliana] (TAIR:AT5G13430.1); similar to Cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor (Rieske iron-sulfur protein) (Plastohydroquinone:plastocyanin oxidoreductase iron-sulfur protein) (ISP) (RISP) (GB:P08980); similar to Rieske FeS-precursor [Spinacia oleracea] (GB:CAA29590.1); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806); contains InterPro domain Rieske iron-sulfur protein; (InterPro:IPR005805) -0.132361477569318 -1.78978547330293 0.109494257598145 1 2.17988894454798 27.9068735392488 -0.132361477569318 0.0432517487475939
AT4G29010_at 10.2855406688705 10.2104240171448 10.5127699503491 10.5387148937471 10.7259553968614 10.2979816600232 10.3689801152029 10.1943092437932 9.88098201772479 10.2124192256582 10.0945733168668 9.83149787493624 10.2469198362951 10.0858301565457 10.0464018286690 10.0914410503564 9.8628645778081 10.1571114241854 9.88213582073529 0.087869217447495 0.088473585293624 0.0916029660253918 0.09062668821467 0.0902060674402795 0.0902562796995406 0.0887566570428415 0.088588895746017 0.0941693393756024 0.0874971202581141 0.0919788820354797 0.0889487572921834 0.0881809958755381 0.0895021768079727 0.0869468096183339 0.087008463636336 0.0955656885672442 0.0960403486786661 0.0901564377105266 4 0|4 /|- 14297722 14298547 14298150 14297050 14302141 - gene protein_coding_gene FALSE TRUE AT4G29010.1 AIM1 (ABNORMAL INFLORESCENCE MERISTEM); enoyl-CoA hydratase Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities similar to MFP2 (MULTIFUNCTIONAL PROTEIN), enoyl-CoA hydratase [Arabidopsis thaliana] (TAIR:AT3G06860.1); similar to IQ calmodulin-binding re (GB:ABE82774.1); similar to peroxisomal multifunctional protein [Oryza sativa] (GB:AAL35606.1); similar to multifunctional protein [Oryza sativa] (GB:AAQ13901.1); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, C-terminal; (InterPro:IPR006108); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; (InterPro:IPR006176); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753); contains InterPro domain 3-hydroxyacyl-CoA dehydrogenase; (InterPro:IPR006180); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927) 0.157138142080415 1.78892455340982 0.109640425993384 1 2.17874532208894 20.4137973413726 0.157138142080415 0.081167449542681
AT1G55265_at 8.0208289196722 8.8586652206376 8.6971121544524 9.18300910301486 8.44714863570852 8.89964596361053 7.99150649135603 8.98517083766927 6.84068221974008 7.55431095673766 5.63771454859865 5.16038446381397 7.16260934572281 6.91182377615961 3.39050847789403 6.9260894203077 6.9627782693179 6.181391592348 6.76457321741434 0.257025192623362 0.258181247125578 0.258352005521457 0.25987685622918 0.254439412805126 0.258029438914012 0.257821721072268 0.262514148459685 0.260457699713549 0.255305173659552 0.264457700938726 0.267787316448625 0.253465874425839 0.257870018732731 0.261145520550096 0.253465874425839 0.262034207938269 0.254968553284713 0.255735405995912 1 1 + 20621190 20621469 20621316.182 20620980 20621672 + gene protein_coding_gene FALSE TRUE AT1G55265.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G19860.1); similar to Protein of unknown function DUF538 [Medicago truncatula] (GB:ABE78678.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.334420107165444 -1.78858825880163 0.109697572210385 1 2.17829865759375 15.1828115581324 -0.334420107165444 0.252576123180788
AT3G19510_at 5.36394697310875 5.6757424634076 5.45127032387836 5.48370261250654 5.35132529332001 5.47621717912032 4.61524147707624 4.86081816750409 4.42961176084322 5.06627074290914 4.85241918698108 5.22121574682159 4.79492914330891 4.50913964900636 4.33699256125753 4.93624366727482 4.49176687799734 4.8337343197343 4.77883504954794 0.184526869249223 0.182030806286708 0.186993126917797 0.179401764915257 0.184511694650991 0.185121086008871 0.187996415316467 0.182395677907213 0.188229847282915 0.185480088427361 0.187915508773122 0.188592460299645 0.181431755843953 0.182892995587489 0.181428773867591 0.183420924474137 0.192729191964364 0.189771453059885 0.182447934475632 3 3|0 -|/ 6763229 6763946 6763551.889 6762770 6766570 - gene protein_coding_gene FALSE TRUE AT3G19510.1 homeobox protein (HAT 3.1) Identical to Homeobox protein HAT3.1 (HAT3.1) [Arabidopsis Thaliana] (GB:Q04996;GB:Q9LT66); similar to PRHA (PATHOGENESIS RELATED HOMEODOMAIN PROTEIN A), transcription factor [Arabidopsis thaliana] (TAIR:AT4G29940.1); similar to Homeobox protein HOX1A (GB:P46605); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Homeobox; (InterPro:IPR001356) 0.150253770773224 1.78792770284333 0.109809900968380 1 2.17742140944812 10.0374302254808 0.150253770773224 0.0722229442938793
AT1G05600_at 5.15305918789753 5.59697912495446 5.39350106341097 5.37906439864661 5.61256892920517 5.62809930911583 4.93152225932352 5.41044460338433 4.30828198192163 4.7508561682209 4.61194058386781 5.03548514856013 4.90105606060699 4.9755115772144 4.702793591444 5.23749251920048 4.9201426409687 4.88873151129586 5.25221428481172 0.212918093964212 0.207536046404609 0.208761463666842 0.218798718198689 0.208926329197966 0.211899972058721 0.207536046404609 0.215999369526274 0.219777046493514 0.209598077248093 0.213061517519257 0.211909370697517 0.215424794149467 0.212922965665032 0.210879890608796 0.208171557828998 0.220473049656666 0.213790872403295 0.212590244558179 1 1 + 1673114 1673610 1673384.182 1672098 1673747 + gene protein_coding_gene FALSE TRUE AT1G05600.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46100.1); similar to fertility restorer homologue-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82447.1); similar to Os01g0913800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045173.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.184500261849033 1.78642764725261 0.110065387878690 1 2.17542975255612 10.2279523673904 0.184500261849033 0.113067239163743
AT1G29760_at 7.45793533589856 7.91818751715718 7.81894240379357 8.37100796717732 8.39914850955376 8.2110247780149 7.25176605760646 7.30670103354408 7.18041129449746 7.47718734096267 6.92547005807465 6.80743197831446 7.42900179068462 6.94264689139525 6.60736902612379 7.51933072296948 7.6546304878295 7.16696959834725 7.68910383120302 0.188562987785318 0.191898551213987 0.19172626448233 0.199143975623213 0.197834625161253 0.201874894631666 0.19349668048506 0.197448284227687 0.218469583088710 0.191717912459151 0.200436188728156 0.188732690916041 0.197002802799144 0.197075463681628 0.208745338148317 0.190454056557136 0.204601106638848 0.195978037117219 0.196052729303302 1 1 + 10423380 10424057 10423795.909 10422316 10424312 + gene protein_coding_gene FALSE TRUE AT1G29760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G34380.1); similar to Os09g0534000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063772.1); similar to hypothetical protein MtrDRAFT_AC148171g21v1 [Medicago truncatula] (GB:ABE89808.1); contains domain SUBFAMILY NOT NAMED (PTHR21212:SF1); contains domain FAMILY NOT NAMED (PTHR21212) 0.199544462789822 1.78520674455389 0.110273740178292 1 2.173809230786 15.1320927710624 0.199544462789822 0.128924777563824
AT4G16430_at 7.45867122242337 7.95374719794932 7.85540129969789 8.0282820122189 7.67296263285016 7.35869597181351 6.79174586642337 7.29347458545218 6.78478290329035 6.68396513515995 6.77645222426683 7.05758696625786 6.89927577250765 6.80741398046998 6.2929413018845 6.83754047676106 6.80055988731775 6.65792050733551 6.64880344136248 0.226820009237288 0.213240112474219 0.227366053328506 0.213240112474219 0.217158539961975 0.224023215630565 0.213240112474219 0.21459473974595 0.224419845572637 0.228359903438237 0.218458337702939 0.213240112474219 0.213240112474219 0.228613532131089 0.227341663128525 0.220530796014899 0.213240112474219 0.219147081814973 0.213946995594856 4 4 + 9268444 9268990 9268770.818 9267283 9269201 + gene protein_coding_gene FALSE TRUE AT4G16430.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46510.1); similar to Os01g0705700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044012.1); similar to Os01g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042524.1); similar to bHLH protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81265.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.207393328706135 1.78502185865496 0.110305323885921 1 2.17356386806051 14.2876535400391 0.207393328706135 0.136864600503761
AT4G17010_at 5.58454275368065 5.87927964847422 5.37997076954344 5.41706324293189 5.04044992783227 5.67902717841618 5.00202650215759 5.04989487945589 4.50907138138494 4.15517175681014 4.20689489941555 3.87968578282149 4.00210525618391 4.03481114948795 3.73311600479574 4.23163279685799 4.36879955015641 4.01255089108922 4.66985782786904 0.235686678087617 0.244344825783085 0.229238269628066 0.23244770279162 0.237538500627980 0.239614424947984 0.233249569549344 0.236933628048571 0.230233350248475 0.231262254436257 0.232910743868672 0.233497765186241 0.228606376152244 0.236946439812528 0.23684955734689 0.233778863113935 0.228363368772475 0.230479821608568 0.231412615101007 4 4|0 +|/ 9576501 9577612 9577158.4 9575831 9577986 + gene protein_coding_gene FALSE TRUE AT4G17010.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23134.1); similar to Os04g0431800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052826.1) -0.192904473465743 -1.78451823298889 0.110391400206160 1 2.17289555674851 9.63073179449772 -0.192904473465743 0.122162126684512
AT1G02170_at 8.23618837972129 8.2347343568191 8.2857626459537 8.34653846016614 7.6851650123172 7.96769953453317 7.2376567069197 7.489125420038 8.07453346929374 7.86836535090703 7.83105977443158 7.82234781470435 7.71824552591053 7.89992179018314 7.31972677173626 7.93699584298663 7.97606216777119 8.07297772804724 7.46498352588554 0.159112163013527 0.158456776899545 0.168574521577622 0.156245493050123 0.156135832350062 0.166325893866060 0.162501732204915 0.163001978130013 0.159997292660488 0.161665727426801 0.157691776285838 0.153081850722339 0.159812662543031 0.150741233676812 0.155814095962678 0.153692837819741 0.162672410507761 0.152516972297929 0.173159896000495 1 1|0 +|/ 412625 413400 412988.125 411883 413554 + gene protein_coding_gene FALSE TRUE AT1G02170.1 LOL3 (LSD ONE LIKE 3); caspase/ cysteine-type endopeptidase Metacaspase AtMCP1b. Arginine/lysine-specific cysteine protease activity. Induces apoptosis in yeast. Contains Pfam profile PF00656: ICE-like protease (caspase) p20 domain similar to latex-abundant family protein (AMC2) / caspase family protein [Arabidopsis thaliana] (TAIR:AT4G25110.1); similar to hypothetical protein [Oryza sativa] (GB:AAG60197.1); similar to Os10g0565100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065417.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) 0.145702462821981 1.78385523325857 0.110504811422866 1 2.17201587228326 15.7477561273919 0.145702462821981 0.0662955417861282
AT4G11410_at 7.19158514553347 7.58958241634112 7.65430563712131 7.57888483923043 8.07320121360003 7.70387329838436 8.03529079157185 8.16096892652603 6.89053407109513 6.96202830516512 7.0876146564893 6.9535439673315 6.8687412680296 7.59724659656796 6.97531225383518 7.30932352792376 7.47206204760662 6.7284274298087 6.52379035104814 0.189506680041098 0.18646914867611 0.192303592166293 0.191912768253428 0.190283376506467 0.180947741859259 0.186476546748825 0.187361058077941 0.203739779482821 0.187591183771227 0.184136945555951 0.192303252738761 0.182242379173094 0.190854698748558 0.196644041210622 0.181268843245528 0.199833916598208 0.182597596445068 0.186289164616004 4 4 - 6945196 6946449 6945789.091 6944913 6947328 - gene protein_coding_gene FALSE TRUE AT4G11410.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT4G23430.2); similar to 3-ketoacyl-CoA reductase 3 [Gossypium hirsutum] (GB:AAY23356.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.170062909885268 1.78379932231234 0.110514380399674 1 2.17194169429967 14.7065373056478 0.170062909885268 0.097325091633597
AT1G74520_at 9.27588458905579 9.48190345933894 9.04816102431614 9.07356800349661 9.8467572892955 9.38177171083921 9.62317227615306 9.67322273657958 9.17811313457365 9.29747708367626 9.72965810704432 9.93750648935657 9.76457906212987 9.68238591215469 9.61166467477619 9.61327009148025 9.29616701847433 9.93232128296967 9.10975643724696 0.0948363052721415 0.0958465955351922 0.102508353678623 0.100434562260460 0.0953647613055857 0.0928718800579298 0.0937328988342626 0.0916218033220153 0.104838054788827 0.0936190532730169 0.0989201265529363 0.093059534387367 0.0949739531582996 0.104869385098486 0.0991072515556693 0.0954611966321949 0.111099107695399 0.0916218033220153 0.0969855656583742 1 1|0 -|/ 28012068 28012791 28012336 28011635 28012961 - gene protein_coding_gene FALSE TRUE AT1G74520.1 ATHVA22A (Arabidopsis thaliana HVA22 homologue A) Part of the AtHVA22a family. Protein expression is ABA- and stress-inducible. Identical to HVA22-like protein a (AtHVA22a) (HVA22A) [Arabidopsis Thaliana] (GB:Q9S7V4); similar to ATHVA22C (Arabidopsis thaliana HVA22 homologue C) [Arabidopsis thaliana] (TAIR:AT1G69700.1); similar to HVA22-like protein c , putative [Solanum demissum] (GB:AAU93595.1); similar to Os06g0226600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057204.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) 0.162423634835483 1.78152258106903 0.110904695819011 1 2.16892190370611 18.8710849519496 0.162423634835483 0.0885468354184675
AT1G23080_at 7.13884422894126 7.40968112375038 6.18742988028841 6.20062637893634 7.2981519580012 6.97415497737575 7.26462456545248 7.27198058361413 7.6140460593834 7.35209957382918 8.67675821093065 8.71444391292792 8.74080685231925 8.42275721326585 8.85230050103279 8.66304426506757 7.8270108867939 8.3756906600822 7.91550766531798 0.156177321181444 0.149623351258842 0.168111119944457 0.172374452871738 0.157164820147384 0.158207993165794 0.155595582153939 0.157868201561314 0.169633316666243 0.161322151689768 0.153311404302012 0.155197355320693 0.161208546638621 0.164027102128337 0.171443525622419 0.156232243306376 0.165859289214163 0.166926100548962 0.151894107306186 1 1|0 -|/ 8181642 8182314 8181974 8180566 8183559 - gene protein_coding_gene FALSE TRUE AT1G23080.1|AT1G23080.2|AT1G23080.3 PIN7 (PIN-FORMED 7); auxin:hydrogen symporter/ transporter|PIN7 (PIN-FORMED 7); auxin:hydrogen symporter|PIN7 (PIN-FORMED 7) Encodes a novel component of auxin efflux that is located apically in the basal cell and is involved during embryogenesis in setting up the apical-basal axis in the embryo. It is also involved in pattern specification during root development. In roots, it is expressed at lateral and basal membranes of provascular cells in the meristem and elongation zone, whereas in the columella cells it coincides with the PIN3 domain. Plasma membrane-localized PIN proteins mediate a saturable efflux of auxin. PINs mediate auxin efflux from mammalian and yeast cells without needing additional plant-specific factors. The action of PINs in auxin efflux is distinct from PGPs, rate-limiting, specific to auxins and sensitive to auxin transport inhibitors. PINs are directly involved of in catalyzing cellular auxin efflux. Identical to Auxin efflux carrier component 7 (AtPIN7) (PIN7) [Arabidopsis Thaliana] (GB:Q940Y5;GB:O49308;GB:Q9SQH5); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter [Arabidopsis thaliana] (TAIR:AT2G01420.2); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)|Identical to Auxin efflux carrier component 7 (AtPIN7) (PIN7) [Arabidopsis Thaliana] (GB:Q940Y5;GB:O49308;GB:Q9SQH5); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT2G01420.1); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776)|Identical to Auxin efflux carrier component 7 (AtPIN7) (PIN7) [Arabidopsis Thaliana] (GB:Q940Y5;GB:O49308;GB:Q9SQH5); similar to PIN3 (PIN-FORMED 3), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT1G70940.1); similar to PIN1 (PIN-FORMED 1), transporter [Arabidopsis thaliana] (TAIR:AT1G73590.1); similar to PIN4 (PIN-FORMED 4), auxin:hydrogen symporter/ transporter [Arabidopsis thaliana] (TAIR:AT2G01420.1); similar to efflux carrier, pin2 [Brassica juncea] (GB:CAC67457.1); similar to efflux carrier of polar auxin transport [Brassica juncea] (GB:CAC24691.1); similar to efflux carrier, pin3 [Brassica juncea] (GB:CAC67688.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.150345984918264 1.78116359103353 0.110966357091969 1 2.16844589449729 15.0488463765347 0.150345984918264 0.0731255634714072
AT1G67740_at 12.9497682906185 13.1183823044774 12.8524566853511 12.8687189837364 13.0044572613919 12.9326905486989 13.5084598566647 13.5964205178309 14.0925128965087 13.7712493786143 14.0615312853148 14.1087781994814 13.9146124922135 13.9863144269931 14.0752575510283 14.0751964158393 13.4532654388714 14.1691311177311 13.7101043475345 0.0539637273753683 0.0517077765210812 0.0575267264006808 0.052069618144498 0.0521798212430173 0.0590343282364026 0.0538225823841180 0.0546841855575505 0.0576305156106746 0.0542001512358624 0.0523601789308098 0.0528628462888685 0.0527222115805287 0.0537891764691372 0.0524421840461947 0.0517697371162008 0.0575071634527293 0.0517077765210812 0.0534916064714878 1 1 - 25398150 25398611 25398364.091 25397731 25398817 - gene protein_coding_gene FALSE TRUE AT1G67740.1 PSBY (photosystem II BY) PsbY precursor (psbY) mRNA. This single nuclear gene is imported into the chloroplasts where it is processed into two integral membrane proteins with identical topology (PsbY-1 and PsbY-2). The protein appears to bind manganese but its role is not well understood. Identical to Photosystem II core complex proteins psbY, chloroplast precursor (L- arginine-metabolizing enzyme) (L-AME) [Contains: Photosystem II protein psbY-1 (psbY-A1); Photosystem II protein psbY-2 (psbY-A2)] (PSBY) [Arabidopsis Thaliana] (GB:O49347); similar to Photosystem II core complex proteins psbY, chloroplast precursor (L-ar (GB:P80470) -0.128060773777517 -1.78079896862579 0.111029018590509 1 2.16796245680343 27.0231525095062 -0.128060773777517 0.0352890187524479
AT1G33050_at 8.77487904173425 8.6999173149748 8.90771860880987 8.88861292347045 9.78022015528575 9.4769227939492 8.36177156503974 7.81779073410083 8.60858239680645 8.25366479114158 8.1914769568795 7.74038358611603 8.13582080520207 8.07209370295558 7.55868522753608 8.09629611107277 8.28074017563689 7.87026118384834 8.58806153031624 0.13778132860584 0.141306653939780 0.135917665383242 0.137478891644992 0.144321738565815 0.148456536762601 0.132704039537279 0.138619335158957 0.142866059803008 0.137129900037522 0.140549655907860 0.136442500701221 0.137237080266324 0.134663504072915 0.142519443456764 0.139051480684973 0.135624353554748 0.144743881885744 0.134053038253042 1 1|0 -|/ 11968356 11969217 11968865.7 11967807 11971001 - gene protein_coding_gene FALSE TRUE AT1G33050.1|AT1G33050.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10470.1); similar to Subtilisin-like serine protease [Pediococcus pentosaceus ATCC 25745] (GB:YP_803612.1) 0.179781217825444 1.78044975716745 0.111089062663556 1 2.16749948952613 17.0768071212093 0.179781217825444 0.108610066788644
AT1G61620_at 8.62171521646797 8.46263277257485 8.66341978258 8.66752047758125 8.7799418292928 8.63393013736903 8.40341918080002 8.33126346306066 7.71008781215385 8.18581785600993 7.94746192216482 8.18362633548307 8.12463690241149 7.86497458609111 8.0477364013894 8.07872761432322 8.31462902018775 8.04398700978892 8.24672825602309 0.133701631256241 0.129070639007636 0.136211257206085 0.132125614472788 0.135381590577304 0.135174625597394 0.135379431525651 0.133274821966840 0.137194872794293 0.133227776256576 0.132477201720917 0.128768147837790 0.13093332736708 0.139771221882321 0.133960044313896 0.130276816584686 0.143012060002790 0.142500701117527 0.132966575430316 1 1 + 22742290 22742835 22742551 22741208 22743095 + gene protein_coding_gene FALSE TRUE AT1G61620.1 protein binding / zinc ion binding similar to Os03g0279900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049735.1); similar to hypothetical protein DDBDRAFT_0216662 [Dictyostelium discoideum AX4] (GB:XP_646037.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.12981161553212 1.78011874595152 0.111146005359991 1 2.16706068528229 16.6321139151536 0.12981161553212 0.0394055392979592
AT3G62000_at 5.77223901378985 5.41951497792577 5.18692075671306 5.06684388871903 5.5177722957789 5.53617232230016 5.7620055712745 5.48095459427476 3.86805977832593 4.46696373040203 4.58543883806538 5.02207181227986 4.90029197691104 5.15241978520268 4.98182572768669 5.05900148218016 4.81439004101435 5.1170422437525 4.74578063218921 0.217884313831311 0.212113731621607 0.210039822449023 0.209127893087844 0.216429046043271 0.219821102926141 0.211016536660994 0.205779918322105 0.216195723676668 0.208207696620222 0.224070366669046 0.208677574356232 0.212572541903104 0.213688950584486 0.212315621824535 0.205949006915495 0.218226896195756 0.206436550248546 0.208121707057534 3 3|0 -|/ 22970434 22971786 22971198.333 22970176 22972184 - gene protein_coding_gene FALSE TRUE AT3G62000.1 O-methyltransferase family 3 protein similar to O-methyltransferase family 3 protein [Arabidopsis thaliana] (TAIR:AT3G61990.1); similar to Os08g0154000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061012.1); similar to O-methyltransferase [Nostoc sp. PCC 7120] (GB:NP_489219.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) 0.156020483987882 1.77920614382717 0.111303138356443 1 2.16585106819419 10.1249670702765 0.156020483987882 0.080829851064081
AT3G25740_at 7.31129546433786 6.79046847411134 7.61757816815673 6.97961099306058 8.15089958556822 7.03003218194242 7.89713866067258 7.53006489896424 6.33860393817735 7.48053688084934 7.85264507504587 7.1020355192698 7.39458802055649 7.89733516479506 7.77913071688265 8.36742725185735 7.06649181879325 7.69661609464437 7.33178382095625 0.196170092507061 0.193068689293933 0.204414852356405 0.209617477562668 0.194310398057955 0.212003572832162 0.198842694152094 0.193068689293933 0.197910413558451 0.196611176044918 0.193981105254374 0.207141648551533 0.195822575713786 0.210817537254883 0.194165456308381 0.196845520708768 0.211894576217020 0.198835806187281 0.206923349829200 3 3|0 +|/ 9399858 9400864 9400531.875 9399023 9400999 + gene protein_coding_gene FALSE TRUE AT3G25740.1 MAP1B (METHIONINE AMINOPEPTIDASE 1C); metalloexopeptidase Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B. Identical to Methionine aminopeptidase 1C, chloroplast/mitochondrial precursor (EC 3.4.11.18) (MetAP 1C) (MAP 1C) (Peptidase M 1C) (MAP1C) [Arabidopsis Thaliana] (GB:Q9FV51;GB:Q9LS05); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to mitochondrial methionine aminopeptidase 3 [Homo sapiens] (GB:AAY55948.1); similar to methionine aminopeptidase 1D [Homo sapiens] (GB:NP_954697.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) 0.328256926031723 1.77782690879976 0.111541010645776 1 2.16402342722506 14.7608070138809 0.328256926031723 0.248943194254914
AT3G43240_at 6.3545630612503 6.18142104961057 6.3896011535674 6.23231801256234 6.51352756087728 6.00352694764651 5.8829486201802 5.55391785715936 5.88235493363794 5.90608381970185 5.85717141319141 6.10467404083317 6.19702192826897 5.96088665741383 6.035980955344 6.02857374744752 6.35321465671197 6.10218625928915 6.23013556333254 0.193244593352085 0.187358470188709 0.19295886377055 0.191457546147081 0.194124069002959 0.198350474004134 0.190808017591153 0.193229404905796 0.193227772150703 0.187346105802112 0.188810210818759 0.193186808485131 0.186841713807407 0.202637140301024 0.191179102984099 0.185323518990681 0.185790417280358 0.194293763896574 0.18711089913418 3 3|0 -|/ 15221020 15221841 15221429 15220924 15225730 - gene protein_coding_gene FALSE TRUE AT3G43240.1 ARID/BRIGHT DNA-binding domain-containing protein similar to Os08g0451400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061946.1); similar to fiber protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08741.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606) 0.182651520017502 1.77304099314838 0.112370108987964 1 2.15768604119853 12.1820556059584 0.182651520017502 0.112562449428689
AT2G25200_at 8.73404375002 9.15263607689584 8.23730829780982 8.94806439013627 9.13211325108798 9.46028238543326 7.98162012559964 8.87279502666708 8.86463018868233 8.72413917603192 8.17371460989908 7.72899823532428 8.3550562173424 8.3678214790939 7.24219498634088 7.94922256731442 8.05298660472769 8.15255360466563 8.94951946368619 0.200993792078286 0.214692721199922 0.213255310604024 0.205916991782539 0.205430607978750 0.214189906591230 0.206287334733435 0.204663011219121 0.208465388064401 0.196493907059053 0.20337753015023 0.201535640360957 0.199206262344672 0.209374834135251 0.213696615090147 0.197636692667088 0.20842503797935 0.201211104020798 0.202535155746744 2 2 - 10743674 10744231 10743877 10743562 10744733 - gene protein_coding_gene FALSE TRUE AT2G25200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11000.1); similar to Os08g0439600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061898.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28921.1); contains InterPro domain Protein of unknown function DUF868, plant; (InterPro:IPR008586) -0.292054700861878 -1.77263293430384 0.112441065443306 1 2.15714602371782 17.2393153200672 -0.292054700861878 0.217683331529927
AT1G31160_at 6.03922634836975 5.93442443174955 5.52598320017478 5.64822450420446 5.80432946624397 5.46951251365364 6.53373191929805 6.8013158771781 6.4187353632372 5.97138321250573 6.51313898454044 6.75582319781556 6.8110126832118 6.60491342248403 6.65993379645482 6.73410985906288 6.24467913766534 6.33815906755428 6.13750940787716 0.187016502634605 0.18436298176233 0.196308259748500 0.191995070718637 0.190841075633935 0.197978792714590 0.189726073747642 0.192618213338947 0.192844320787141 0.188669915737322 0.186114195138855 0.189001779882396 0.187286854072298 0.189483012880385 0.185261687197934 0.183892274695105 0.197251632633112 0.185167167033447 0.18468749898408 1 1|0 -|/ 11122862 11123930 11123410.5 11122640 11124136 - gene protein_coding_gene FALSE TRUE AT1G31160.1 zinc-binding protein, putative / protein kinase C inhibitor, putative similar to zinc-binding protein, putative / protein kinase C inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G56490.1); similar to Histidine triad (HIT) protein [Medicago truncatula] (GB:ABC75370.1); contains InterPro domain Histidine triad (HIT) protein; (InterPro:IPR001310) -0.154158474510517 -1.77204735914015 0.112542962877340 1 2.15637117352230 12.3488921641784 -0.154158474510517 0.0792337056155555
AT2G34040_at 6.9066631644803 6.67936741003094 6.80381829371128 6.6942652619248 6.75635362206018 6.79071615981241 6.22141677942933 5.85283869441048 6.20494283634471 5.9980661656061 6.29340188546572 6.35007388650755 5.86720610691348 5.8460608523557 6.06294515645963 5.83135004459159 5.9001802819618 5.37593369517171 5.74133771028675 0.221181783676028 0.234221559833692 0.226123398949277 0.224305213783667 0.225294150067146 0.228375843296602 0.219655592930530 0.221504323227629 0.225996503850533 0.221542122082087 0.219655592930530 0.225321193777999 0.225026128204952 0.24132314409777 0.219655592930530 0.219655592930530 0.232949229847981 0.230584003765142 0.219736522246863 2 2|0 -|/ 14385108 14386032 14385454.889 14384817 14389573 - gene protein_coding_gene FALSE TRUE AT2G34040.1|AT2G34040.2 apoptosis inhibitory 5 (API5) family protein similar to apoptosis inhibitory 5 (API5) family protein [Arabidopsis thaliana] (TAIR:AT1G29030.1); similar to putative fibroblast growth factor 2-interacting factor [Oryza sativa (japonica cultivar-group)] (GB:BAD15974.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383)|similar to apoptosis inhibitory 5 (API5) family protein [Arabidopsis thaliana] (TAIR:AT1G29030.1); similar to putative fibroblast growth factor 2-interacting factor [Oryza sativa (japonica cultivar-group)] (GB:BAD15974.1); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383) 0.152830953444312 1.77176610183349 0.112591935808757 1 2.15599904297182 12.5493513696113 0.152830953444312 0.0775269086097153
AT1G62030_at 4.48272945253332 5.26512652133328 4.18745061898869 4.22836890138683 5.06248576850506 5.26973841192156 4.82058654483273 4.90006034334799 4.47807573291891 5.37399632570813 5.69927568668919 6.26441225224005 6.23465245577134 5.06281112392882 5.42646748585368 6.31003941845265 5.73495163040559 5.30638132475525 5.61355718519574 0.220638431876497 0.222386214279967 0.219655187215660 0.223583584813205 0.226675003008023 0.231832998088047 0.218928105877163 0.224520059093406 0.222475856887533 0.227208930310186 0.220760183506945 0.219870777096485 0.230003191630613 0.237851367106782 0.225745369137071 0.218562615394188 0.229256102917333 0.223520370030339 0.22267444708584 1 1 - 22928015 22928418 22928199.636 22927915 22930263 - gene protein_coding_gene FALSE TRUE AT1G62030.1 DC1 domain-containing protein similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G02540.1); similar to MEE53 (maternal effect embryo arrest 53), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G10560.1); similar to DC1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48320.1); similar to DC1 domain-containing protein [Brassica oleracea] (GB:ABD65623.1); contains InterPro domain C1-like; (InterPro:IPR011424); contains InterPro domain DC1; (InterPro:IPR004146) 0.209774692004927 1.77068429649215 0.112780486710240 1 2.15456793626495 10.2321101554577 0.209774692004927 0.140918915556664
AT1G29790_at 6.93713752551998 7.7443760497525 6.95746014553161 7.4004387429192 7.58289194201198 7.96159266201088 7.2346024170082 7.93676115077055 7.96387753177245 7.55874309614561 6.73552383263086 6.9662834184328 7.80305920217476 7.61584165910148 6.66704221815552 7.32211704697522 7.67310316343652 7.18467608568348 7.9550702660552 0.193475048028157 0.193180791800484 0.199714327643428 0.195279342802926 0.192510289528624 0.199068899718776 0.197368939843484 0.196747443407331 0.200287948405657 0.199502901268774 0.201607341229120 0.197345295147418 0.205154931268464 0.196316674195395 0.20476318292714 0.192331524334028 0.199030316406802 0.201280190910539 0.199140191362868 1 1 + 10430714 10431100 10430884 10429961 10432018 + gene protein_coding_gene FALSE TRUE AT1G29790.1 similar to ATRAD3 (Arabidopsis thaliana Ras Associated with Diabetes protein 3) [Arabidopsis thaliana] (TAIR:AT5G40830.2); similar to Os10g0578600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065501.1); similar to hypothetical protein [Oryza sativa] (GB:AAG46168.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB48033.1); contains InterPro domain Tetraspanin; (InterPro:IPR008952) -0.283782274489155 -1.76854461493804 0.113154285615344 1 2.15173843733398 15.0053339759314 -0.283782274489155 0.210836069736623
AT1G75330_at 8.66443743348036 8.51868798467244 8.51137351750498 8.54924015894046 8.58980541002087 8.22541090601742 8.68641136524761 8.66174600170547 8.55718210034605 8.9010671569031 8.5093268575313 8.8219370695824 8.17581315868616 8.75498668577052 9.17165768823922 8.6655886580986 8.57362783218479 8.4438098797151 8.84380014854017 0.140101414352446 0.135233811188772 0.138139001698429 0.140384160392919 0.139168424382126 0.136103473800687 0.136887073588123 0.143636920795363 0.143900530445663 0.135312450335702 0.142171197736056 0.132756285894009 0.137800366167797 0.147780157942910 0.140118636878207 0.135180063289043 0.135517681962135 0.146032356998214 0.139182987554215 1 1 - 28270121 28271032 28270465 28269920 28272073 - gene protein_coding_gene FALSE TRUE AT1G75330.1 OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- and carbamoyltransferase Identical to Ornithine carbamoyltransferase, chloroplast precursor (EC 2.1.3.3) (OTCase) (Ornithine transcarbamylase) (OTC) [Arabidopsis Thaliana] (GB:O50039;GB:Q9FWS2); similar to aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) [Arabidopsis thaliana] (TAIR:AT3G20330.1); similar to Ornithine carbamoyltransferase, chloroplast precursor (OTCase) (Ornithine transcarbamylase) (GB:Q43814); contains InterPro domain Aspartate/ornithine carbamoyltransferase; (InterPro:IPR006130); contains InterPro domain Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; (InterPro:IPR006131); contains InterPro domain Ornithine carbamoyltransferase; (InterPro:IPR002292); contains InterPro domain Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; (InterPro:IPR006132) -0.14580976067965 -1.76766374144111 0.113308508300616 1 2.15057398640989 17.2543607375266 -0.14580976067965 0.0683661246769087
AT4G39450_at 6.66852223503617 6.95506717335760 6.72504096616103 7.13949724007634 6.99489294417528 6.59866724684835 6.7994866419915 6.92137964529656 5.75142438508493 6.44371988976165 6.9244189068618 6.45880231089255 6.4301243097988 6.24307757011594 6.62824569966455 6.56904501944936 6.46322392876826 6.01066634772543 6.19350206232201 0.187610282384573 0.184114882197079 0.193584110028402 0.189481250553545 0.194221531276458 0.208683763738105 0.190234410445979 0.184114882197079 0.209722037196931 0.187493397494677 0.188776427923181 0.184114882197079 0.190104658300641 0.197720143105876 0.197402903893287 0.190175228905406 0.198829218998371 0.200378383103682 0.184458301592216 4 4 + 18354128 18354670 18354335.818 18347587 18355050 + gene protein_coding_gene FALSE TRUE AT4G39450.1 similar to Os01g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042222.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67785.1); contains domain gb def: Hypothetical protein AT4g39450 (PTHR13650:SF3); contains domain FAMILY NOT NAMED (PTHR13650) 0.182406203999093 1.76750709113344 0.113335955041613 1 2.15036693111801 13.1480689069757 0.182406203999093 0.112915311987995
AT1G67250_at 9.83530989826674 9.94681694666827 10.1604091038276 10.1131009647529 9.93045488728358 9.69928359035513 9.72216892609145 9.8042804377186 9.6244629462458 9.69270618813606 9.95498199312191 9.7909478246936 9.65674281299544 9.87558904335617 9.81452257391995 9.71245157227153 9.40189195667299 9.49846582767123 9.47186432526656 0.0826182385191196 0.0824537425307913 0.0853377787026417 0.0833185895172373 0.0836585411568044 0.0895142643212681 0.08533721451301 0.0852855102434735 0.0928353107835386 0.085839743744577 0.0838984416348542 0.0829771348408208 0.0857501284093706 0.0893033021314689 0.0870982965079266 0.0844723245543595 0.0844261098316293 0.0853012978047545 0.0867405276611089 1 1 - 25167473 25168561 25167947.727 25167305 25168719 - gene protein_coding_gene FALSE TRUE AT1G67250.1 proteasome maturation factor UMP1 family protein similar to proteasome maturation factor UMP1 family protein [Arabidopsis thaliana] (TAIR:AT5G38650.1); similar to hypothetical protein [Picea mariana] (GB:AAC32110.1); contains InterPro domain Proteasome maturation factor UMP1; (InterPro:IPR008012) 0.132761399203458 1.76687900822245 0.113446063880588 1 2.14953682758075 19.5562499379392 0.132761399203458 0.0473469308174871
AT2G48010_at 5.2173614462686 5.62181841082083 5.33000425811317 5.58700622444286 5.0338235219602 5.77981907665506 4.63313295569465 5.49058382554117 5.80362010078022 5.57684782326209 4.92767767249409 4.65933125930675 5.1266352140877 4.72531128655746 4.60394055451084 5.4720101711181 5.00244171334992 5.06483693869013 5.75710336220225 0.200646185975635 0.197983848357254 0.198663979353629 0.198710168930504 0.198983132622171 0.207273841985626 0.196699798262676 0.206730329440490 0.203802543670134 0.196767354401041 0.202027769112695 0.200083865214709 0.202982727606609 0.198517291932127 0.207730715769271 0.199682472443206 0.203576277246054 0.199032299940982 0.197325119261363 2 2 + 19649822 19650360 19650144.273 19648447 19650561 + gene protein_coding_gene FALSE TRUE AT2G48010.1 RKF3 (RECEPTOR-LIKE KINASE IN IN FLOWERS 3); kinase receptor-like serine/threonine kinase (RKF3) similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G11050.1); similar to putative receptor-like serine/threonine kinase [Man (GB:AAW81714.1); similar to Os01g0384300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043097.1); similar to Os05g0423500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055591.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.286405775052819 -1.76685052683381 0.113451059299044 1 2.14949918814233 10.6668421466100 -0.286405775052819 0.213452023664091
AT3G03100_at 9.36667014737188 9.35095196572044 9.15481739019009 9.18454042574263 9.12449004666567 9.15648052744223 9.35455835740117 9.42149374200963 9.23595686022956 9.14519631198107 9.184890203511 9.1527947724117 9.02726078886005 9.18788290446 9.14860883727419 9.26252977241778 9.08124658583881 9.1704040496766 9.14348489816119 0.09936817220535 0.0983954316897024 0.0980574613374323 0.097225882801561 0.0989003309781775 0.103596709447058 0.0998561330078926 0.102029800435927 0.103677237821471 0.0986594083593006 0.101258139073737 0.0987451500092475 0.100772425660640 0.103426786212848 0.100094331723919 0.0980828674191525 0.108169202885823 0.103814581618824 0.097962234953322 3 3|0 -|/ 705594 707550 706262.25 705406 707658 - gene protein_coding_gene FALSE TRUE AT3G03100.1|AT3G03100.2 NADH:ubiquinone oxidoreductase family protein|oxidoreductase Identical to Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (EC 1.6.5.3) (EC 1.6.99.3) [Arabidopsis Thaliana] (GB:Q9M9M9); similar to NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48039.2); similar to NADH:ubiquinone oxidoreductase 17.2 kD subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66294.1); similar to Os10g0579300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065506.1); contains InterPro domain NADH:ubiquinone oxidoreductase 17.2 kD subunit; (InterPro:IPR007763) -0.120631786549984 -1.76469197358499 0.113830250360237 1 2.14664729269603 18.4276661233664 -0.120631786549984 0.0140954661255312
AT1G09630_at 7.77796191411832 7.83488850628354 6.99244269568359 6.9091713416808 6.38302518041448 6.67420466192084 6.17608256368972 6.69185932468206 5.94811383579967 5.6029600370848 6.47397495564704 6.95540785160785 5.82578192221387 6.39638748596958 7.20507251801278 5.96716446472004 5.67608443244188 6.59666700504153 5.42450024308835 0.205519443117789 0.195773109129658 0.196058529729377 0.194674042380803 0.197628575160247 0.200119817915931 0.196562922499546 0.196277199259066 0.206937670199159 0.194674042380803 0.199638401571725 0.194674042380803 0.194674042380803 0.198103371504468 0.195241295026762 0.194674042380803 0.214378452514371 0.206330418293746 0.197187598383925 1 1 - 3118356 3119492 3118795.818 3118205 3119710 - gene protein_coding_gene FALSE TRUE AT1G09630.1 ATRAB11C (ARABIDOPSIS RAB GTPASE HOMOLOG A2A); GTP binding Encodes a putative GTP-binding protein. Identical to Ras-related protein Rab11C (RAB11C) [Arabidopsis Thaliana] (GB:O04486); similar to AtRABA2b (Arabidopsis Rab GTPase homolog A2b), GTP binding [Arabidopsis thaliana] (TAIR:AT1G07410.1); similar to Ras GTPase [Medicago truncatula] (GB:ABE91946.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.174027883432035 1.76455682370797 0.113854031270708 1 2.14646877973409 12.9527506659497 0.174027883432035 0.103974881765072
AT2G47640_at 7.95955045593133 8.60241313700433 7.96453243097643 7.9294889668552 8.36471338219288 7.21145798026749 7.6582503828718 7.30734410068004 7.71438804164239 7.22816689063734 6.93345629079353 7.12517526824164 7.04287352746581 7.09527603036627 6.99924604408679 7.25708980657276 6.13219818288981 6.41971769526038 7.51168013703492 0.207631071629218 0.206905252713660 0.205911347204361 0.204740327085637 0.213287520763147 0.214251968968254 0.211682717404471 0.225283973976235 0.204740327085637 0.20851261014481 0.206899114442526 0.212809267069989 0.208999406463318 0.211828112077030 0.210443513358849 0.204740327085637 0.238918932143912 0.212026386511924 0.204740327085637 2 0|2 /|+ 19544971 19545477 19545321.222 19544248 19545694 + gene protein_coding_gene FALSE TRUE AT2G47640.1|AT2G47640.2|AT2G47640.3|AT2G47640.4 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62840.1); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62840.2); similar to Os05g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055168.1); similar to putative small nuclear ribonucleoprotein D2 [Oryza sativa (japonica cultivar-group)] (GB:AAV32147.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.311728623222063 -1.76439726517643 0.113882113077390 1 2.14625803384472 15.0549059190047 -0.311728623222063 0.236498919177662
AT1G65220_at 9.12834640056085 8.97686593176773 8.84399559773574 8.65058005915014 9.2289673037763 8.86622372210293 8.81084381520698 8.92308796485172 9.13122931365468 9.04978460884834 8.96031106595293 8.93024989912819 9.03514296619663 9.16085097784411 8.61877492657526 9.03339242588168 8.78832380673743 8.48465290444386 9.17761798022395 0.100437714377491 0.0977858969751277 0.105343763443068 0.0976801057405669 0.0985263757459877 0.100165935074527 0.0960053804297658 0.0955930816271362 0.101534978446123 0.0981661480493537 0.0971349222667175 0.0968761291903649 0.0947128066767519 0.0987549316575083 0.104986900254282 0.0982061364153733 0.102492210180768 0.103641467161071 0.0947128066767519 1 0|1 /|+ 24231747 24232417 24232064.222 24229774 24232633 + gene protein_coding_gene FALSE TRUE AT1G65220.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G36230.1); similar to Os11g0414000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067760.1); similar to putative protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95492.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307) -0.152712976693093 -1.76391571537773 0.113966903493619 1 2.14562204778091 17.9266170189794 -0.152712976693093 0.0782654058137044
AT2G33820_at 5.80789513904044 5.33158780339851 5.3253607825108 5.03620061843826 5.62637629951312 5.87185079976993 5.87497789104231 5.57782987595659 4.91684152572103 5.5221043248595 4.9643044289257 5.55955208197166 4.9880065072117 4.89836085517836 5.25287750618993 5.54984663621484 5.6092954218846 4.86240160791778 5.7595103827279 0.225522738177806 0.216138903024582 0.217822494899758 0.218097668114352 0.216047547306588 0.217441121086073 0.239289334837974 0.231196656185206 0.244642463624589 0.217657189015593 0.219161146207422 0.218039240001363 0.216047547306588 0.226005290266614 0.219999171580089 0.216047547306588 0.230625648596630 0.222628484120083 0.217443235045266 2 2 - 14313454 14314091 14313862.444 14313369 14315369 - gene protein_coding_gene FALSE TRUE AT2G33820.1 mitochondrial substrate carrier family protein (BAC1) encodes a mitochondrial ornithine transporter which exports ornithine from the mitochondrion to the cytosol similar to BOU (A BOUT DE SOUFFLE), binding [Arabidopsis thaliana] (TAIR:AT5G46800.1); similar to mitochondrial amino acid carrier [Lycopersicon esculentum] (GB:ABH07903.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.186015166358711 -1.76358174128621 0.114025743594563 1 2.14518100820147 10.8615429221036 -0.186015166358711 0.117248455742457
AT4G21510_at 6.22666363823769 6.31828848582468 5.16526891819458 5.25142086651711 6.73497949376829 6.55965942019619 4.96114959179372 5.64205873450635 6.40278150052004 5.90081546687543 5.71538238218417 5.44544559698956 5.85805795155679 6.05136022564458 5.42906979575148 6.0256422394979 5.81867685347617 5.43170255920059 6.43547190366158 0.199807597618776 0.199755475428028 0.199358914718929 0.210681704790893 0.210013783442733 0.203696942958454 0.214957579468926 0.202798307439709 0.209226805217597 0.200416903445497 0.203817278993727 0.199011951837977 0.205045467001389 0.199429300527812 0.204696298457443 0.200776368235398 0.199711463791080 0.200326373724671 0.199433522585691 4 4 - 11446205 11446894 11446541.545 11445861 11447175 - gene protein_coding_gene FALSE TRUE AT4G21510.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G05010.1); similar to At1g61340 [Medicago truncatula] (GB:ABD32592.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.191823513868131 -1.76179841817482 0.114340411806133 1 2.14282657351855 11.8415728890748 -0.191823513868131 0.123608969372717
AT1G11930_at 9.5757713234199 9.4427172644579 9.50164428523196 9.53780529972607 9.67273558859554 9.38232039976063 9.16638056879573 9.14798930511836 9.07717679680987 9.0699184202343 9.05840577461326 9.13404775748334 9.01765892855675 9.2972362584415 8.96031239336589 9.41767207778903 9.09573406459294 9.22271895008774 9.0536099486015 0.102448749151812 0.099044876705271 0.104996647481846 0.104000810887457 0.101794659190104 0.0989815603742024 0.0998236825810962 0.100310680715752 0.104265854244802 0.102235003638351 0.102644861823661 0.105107030496918 0.106173545145527 0.103540221217065 0.108250476931916 0.102169286098332 0.106869641801472 0.102174749832017 0.103263575637717 1 1|0 +|/ 4028955 4030253 4029583.857 4028690 4030582 + gene protein_coding_gene FALSE TRUE AT1G11930.1|AT1G11930.2 alanine racemase family protein similar to alanine racemase family protein [Arabidopsis thaliana] (TAIR:AT4G26860.1); similar to Os05g0150000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054662.1); similar to putative proline synthetase associated protein [Oryza sativa] (GB:CAD29783.1); contains InterPro domain Alanine racemase, N-terminal; (InterPro:IPR001608); contains InterPro domain Protein of unknown function UPF0001; (InterPro:IPR011078) 0.136991665807495 1.76019592053279 0.114623863219035 1 2.14071171834993 18.5371080031374 0.136991665807495 0.0557252737044526
AT1G74450_at 6.32673926874132 6.62799691385822 6.8436818360684 6.9400052825537 6.63956607786071 6.41096810363232 7.20268372329553 7.21291405878139 6.08670758077711 5.5510543941342 6.33318276782156 5.67113644328578 5.40021912132054 6.12674219850776 4.74284548429446 5.91973672071175 5.52200437254915 5.79469408511207 5.89325873384004 0.230947008082902 0.224893294408865 0.229031327273286 0.232586205096998 0.226308137428380 0.231853358261207 0.227605291663382 0.232059697457818 0.230179033201145 0.228388178914264 0.224673563396260 0.230280823047985 0.230541796088339 0.229348438359149 0.235726650748631 0.224397992859076 0.239277101283746 0.233784988643505 0.227671877313605 1 1 + 27986994 27987394 27987124.636 27986170 27987941 + gene protein_coding_gene FALSE TRUE AT1G74450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18740.1); similar to Protein of unknown function DUF793 [Medicago truncatula] (GB:ABE83157.1); contains InterPro domain Protein of unknown function DUF793; (InterPro:IPR008511) -0.144440793261864 -1.75784650461387 0.115040613599403 1 2.13761258620443 12.5418162674910 -0.144440793261864 0.0675569742132281
AT2G23120_at 11.7027536918115 11.7849413045539 11.3225044522924 11.3395064318286 11.8240283397463 11.5868394883789 11.9804876068636 11.9388121864217 10.6191371191657 11.3262525105867 11.2765603859090 10.8332954039866 10.9702875415636 10.9507411211750 10.8808128364594 11.1609850229944 11.0746776231195 10.7918543261107 10.8135356301735 0.0824128761953417 0.0830962592114209 0.083029645198634 0.08469066459644 0.0827764379270703 0.0854686767645731 0.0829516105563004 0.0849397554989802 0.0937855454949979 0.082867002273731 0.0847544800097837 0.0817951826234212 0.0870757240421554 0.0847311756627833 0.0842643512804614 0.0825836880069737 0.083907323932924 0.0847660092763831 0.0834667660592774 2 2 + 9849242 9849409 9849319.364 9849123 9849714 + gene protein_coding_gene FALSE TRUE AT2G23120.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G23110.1); similar to PvLEA-18 [Phaseolus vulgaris] (GB:AAC49859.1); similar to hypothetical protein MtrDRAFT_AC144765g23v1 [Medicago truncatula] (GB:ABE87033.1); similar to LEA-18 [Phaseolus vulgaris] (GB:AAF81194.1) -0.130384494997503 -1.75716604333772 0.115161580238365 1 2.13671530721076 22.6410059557238 -0.130384494997503 0.0441337787272371
AT3G26890_at 8.70228083643009 8.69341948106135 8.82512421664066 8.52495309603318 9.20875190987204 9.00011957002829 8.54161363396202 8.39221476593337 9.3088987781919 9.52702165389596 8.81631446986264 8.59144681767138 9.0955643704149 8.95002161622517 8.45966204965032 9.40942786888383 9.22535471648128 8.71429039403833 9.67862283423886 0.120070684451653 0.113654472057296 0.112325787144073 0.114021523778656 0.11595002372186 0.116695609176407 0.116158904259042 0.116672527180867 0.113160604462703 0.115775001661775 0.1205528455546 0.116495142505267 0.115582463624428 0.116786013740837 0.116439186005142 0.112269405010258 0.119235935671641 0.116381634474543 0.119606144502891 3 3|0 -|/ 9908698 9910081 9909164.3 9908499 9912858 - gene protein_coding_gene FALSE TRUE AT3G26890.1|AT3G26890.2|AT3G26890.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41110.1); similar to Os09g0509400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063629.1); similar to Os08g0536100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062361.1); similar to unnamed protein product; gene_id:MEE6.18 unknown protein-related [Medicago truncatula] (GB:ABE89396.1); contains domain FAMILY NOT NAMED (PTHR13199); contains domain SUBFAMILY NOT NAMED (PTHR13199:SF3) -0.144866224370963 -1.75629846860095 0.115315982061367 1 2.13557150469774 17.9423637104180 -0.144866224370963 0.0683574027671745
AT3G54210_at 11.5528320259893 11.5561603968744 11.1662831141556 11.1077067123434 11.3954908288927 11.1828350593957 11.6027247064741 11.6765405106919 11.6146498598797 11.9655646726728 12.0473372708112 12.2244460934219 11.6990841595475 11.8708508357183 12.4752628058322 12.012698077515 11.4361623717677 11.7788741195760 11.8672293140733 0.0833963399358753 0.0771442093660423 0.0768033779169025 0.078894318327568 0.081199942635144 0.0863398712826227 0.077509711000207 0.0809360611735856 0.0852506935569685 0.0773127036624733 0.0821358551382767 0.0770035651672789 0.0807466934750692 0.079571808668873 0.0781600063712832 0.0772098726369303 0.090226261301413 0.0824318523898336 0.0773341034578066 3 3 - 20078650 20079287 20078897.727 20078525 20079413 - gene protein_coding_gene FALSE TRUE AT3G54210.1 ribosomal protein L17 family protein Identical to 50S ribosomal protein L17, chloroplast precursor (CL17) (RPL17) [Arabidopsis Thaliana] (GB:Q9M385;GB:Q8LCR3); similar to ribosomal protein L17 family protein [Arabidopsis thaliana] (TAIR:AT5G09770.1); similar to 50S ribosomal protein L17, chloroplast precursor (CL17) (GB:O80363); contains InterPro domain Ribosomal protein L17; (InterPro:IPR000456) -0.128355315039395 -1.75482963408206 0.115577829128296 1 2.13363554566991 23.2845237105100 -0.128355315039395 0.0402565181309752
AT3G61110_at 10.7126544812358 10.7180338053982 10.2935867169792 10.3520128531591 10.2577639154792 10.373497139357 10.4032829597684 10.7087794555261 10.2183229327042 10.4769621273363 10.5566764530635 10.6974533431668 10.3182561395084 10.3924741668396 10.8346984372530 10.3190163970377 10.3087179875930 9.96424605233095 10.4525462201032 0.0903628653162898 0.0884143555324299 0.0911207986654625 0.0910049200809915 0.0905389476752852 0.0920364551078052 0.0929072711943133 0.093029891348823 0.102115357480112 0.0864193836584516 0.0950473657251163 0.0920937734260331 0.0936078894529446 0.100770390095395 0.0886073930637692 0.0908452245269797 0.100823031646410 0.0962024578768252 0.0889473486098392 3 0|3 /|+ 22623364 22623557 22623504 22622609 22623786 + gene protein_coding_gene FALSE TRUE AT3G61110.1 ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27); structural constituent of ribosome Arabidopsis ribosomal protein Identical to 40S ribosomal protein S27-2 (RPS27B) [Arabidopsis Thaliana] (GB:Q9M2F1;GB:Q9ZNS3); similar to 40S ribosomal protein S27 (RPS27A) [Arabidopsis thaliana] (TAIR:AT2G45710.1); similar to ribosomal protein S27-like protein [Solanum tuberosum] (GB:ABA40465.1); contains InterPro domain Ribosomal protein S27E; (InterPro:IPR000592) -0.137570286926973 -1.75430874979993 0.115670819272457 1 2.13294917068935 20.8807278152697 -0.137570286926973 0.0574387273918402
AT1G63000_at 7.80886838924047 7.9015969064743 7.14724328949994 7.42713622030046 7.01792846944767 7.31561480004642 8.46659185272028 8.52302388798857 7.91377123130329 7.94867767743442 8.80411442866624 8.7732515643345 8.22245660978043 8.77050634342279 8.89801540357418 8.62654536062326 8.27825750530138 8.06063323941434 7.8447282279491 0.136092375992737 0.133684695117115 0.139861633492961 0.134824873530343 0.144193164583803 0.139890851252508 0.136680782909896 0.134945265875953 0.137153605436119 0.142607661979774 0.134596019223941 0.139971166565271 0.145240548865371 0.133684695117115 0.137689862729382 0.135668691968360 0.137860961378410 0.141352051276211 0.141807043533591 1 1 + 23346493 23347466 23347089.818 23346058 23347778 + gene protein_coding_gene FALSE TRUE AT1G63000.1 NRS/ER (NUCLEOTIDE-RHAMNOSE SYNTHASE/EPIMERASE-REDUCTASE) similar to RHM1/ROL1 (RHAMNOSE BIOSYNTHESIS1), UDP-glucose 4,6-dehydratase/ catalytic [Arabidopsis thaliana] (TAIR:AT1G78570.1); similar to dTDP-D-glucose 4,6-dehydratase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29243.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain dTDP-4-dehydrorhamnose reductase; (InterPro:IPR005913) -0.148104693144124 -1.75428523473067 0.11567501890963 1 2.13291818663739 15.9293079448574 -0.148104693144124 0.0731635244225923
AT1G43860_at 8.30414616552517 8.22514086391461 8.17946542877902 8.14716201407644 8.1130422848054 8.11524187688853 8.26048511445909 8.18489933892314 7.22951905509742 7.06699848497853 7.32863191057087 7.53357770525139 7.01765776614625 7.23206696421829 7.56238445033984 7.0786504422183 7.23948015895578 6.96572636933348 6.39693310915528 0.176181101465487 0.175870637355081 0.184376361701740 0.183629645220289 0.174831333624712 0.182848935695853 0.172509114799401 0.171298317556415 0.192492626030562 0.190302955318751 0.172074267420289 0.18308519668839 0.174256240917721 0.179061705335665 0.184034941832539 0.177383409904495 0.191375349107664 0.183033213089937 0.188511700401807 1 1|0 -|/ 16624743 16625335 16624972.556 16624508 16626909 - gene protein_coding_gene FALSE TRUE AT1G43860.1 transcription factor similar to Shwachman-Bodian-Diamond syndrome [Gallus gallus] (GB:NP_001006211.1); similar to Os08g0107500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060798.1); contains InterPro domain Polysaccharide lyase family 8-like, C-terminal; (InterPro:IPR011071); contains InterPro domain Shwachman-Bodian-Diamond syndrome proteins; (InterPro:IPR002140) 0.121007559117025 1.75323027573055 0.115863573697626 1 2.13152832511107 15.2624923128996 0.121007559117025 0.019733844490516
AT1G21350_at 5.94703416265154 5.65238240804737 6.15288372267587 5.47307383407654 6.1870000874132 5.75197766092949 6.57909612318355 6.46163501140343 6.22266545469806 6.53634368811143 6.92107886653562 6.9963739807483 7.02591684562636 7.0975976067642 7.16426799565701 7.40022700914012 6.64377509942594 6.8066472062374 6.15458480837146 0.19118439578388 0.1959506209614 0.200420957044380 0.207253749146099 0.187869341074120 0.197608386771845 0.191738765887186 0.196133968456575 0.212517903510942 0.194971209183982 0.1906962969177 0.189539044669562 0.197769149080582 0.206453685882248 0.196487526971296 0.189771807501007 0.196347979988235 0.187869341074120 0.198536353878039 1 1 - 7477503 7478949 7478323.364 7476930 7479030 - gene protein_coding_gene FALSE TRUE AT1G21350.1|AT1G21350.2|AT1G21350.3 electron carrier|electron carrier/ oxidoreductase similar to hypothetical protein RB2501_11257 [Robi (GB:ZP_01121638.1); similar to Os07g0260300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059323.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594)|similar to hypothetical protein Noc_0989 [Nitrosococcus oceani ATCC 19707] (GB:YP_343028.1); similar to Os07g0260300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059323.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594)|similar to hypothetical protein Noc_0989 [Nitrosococcus oceani ATCC 19707] (GB:YP_343028.1); similar to Os07g0260300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059323.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594) 0.216825579579431 1.75273201885346 0.115952727468155 1 2.13087201585797 12.6813938229612 0.216825579579431 0.150069704314009
AT2G20760_at 8.89874452481836 8.93946046741499 8.98042659067446 8.9398335245121 8.57883331088532 8.57807090458295 8.6877397750602 8.80074344142447 8.99393194773075 8.83316275550086 9.39826082358356 9.21852488715415 9.00512025862525 9.31928633922613 9.35569482014318 8.74769020418314 8.69930757361576 9.15597385379693 8.59417414046637 0.100718672520652 0.101261664903523 0.0998766619705222 0.106314797660136 0.110329472632445 0.106128938082006 0.107057131211259 0.101804990684621 0.111605079143836 0.100973922629570 0.099006055246225 0.100024733713879 0.100063136540477 0.102537180215697 0.0996876515001084 0.099603382792577 0.107624696546160 0.100278174973969 0.102108123533005 2 0|2 /|- 8950368 8950794 8950575.4 8949844 8952325 - gene protein_coding_gene FALSE TRUE AT2G20760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83515.1); contains InterPro domain Clathrin light chain; (InterPro:IPR000996) 0.121505880479609 1.75240842784634 0.116010662220050 1 2.13044582031028 17.7602675472251 0.121505880479609 0.0219417992633725
AT2G45190_at 7.16829212702132 7.0146360892002 6.72503121937097 6.6130084606577 8.29298988010463 7.91337727511078 8.41729634787885 8.29192623907987 8.07979159747113 7.76695157657201 8.17648743258006 8.45471917523467 8.42484187542104 7.89430703402994 7.78052137992526 8.6640214123812 7.51572033095083 7.65470455402877 8.25712152632205 0.199679022656617 0.208356672276209 0.209654388436300 0.205425654942357 0.211452753334463 0.205021134158335 0.201115988762531 0.201417478609008 0.220845422518494 0.196704808107194 0.194965333652513 0.201589948422966 0.196530907658522 0.206244591080453 0.199248194961847 0.196562386739205 0.214814456053225 0.21277884863876 0.196763550496099 2 0|2 /|- 18635532 18637338 18636605.556 18635339 18637786 - gene protein_coding_gene FALSE TRUE AT2G45190.1 AFO (ABNORMAL FLORAL ORGANS); transcription factor Encodes a member of the YABBY family of transcriptional regulators that is involved in abaxial cell type specification in leaves and fruits. Identical to Axial regulator YABBY1 (Protein ABNORMAL FLORAL ORGANS) (Protein FILAMENTOUS FLOWER) (Protein antherless) (Fl-54) (YAB1) [Arabidopsis Thaliana] (GB:O22152); similar to YAB3 (YABBY3), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00180.1); similar to YABBY-like transcription factor GRAMINIFOLIA [Antirrhinum majus] (GB:AAS10177.1); contains InterPro domain YABBY protein; (InterPro:IPR006780); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.150446079726731 -1.75205040126430 0.116074793591383 1 2.12997430885497 15.6072131878567 -0.150446079726731 0.0766111785813196
AT2G47490_at 7.72200755021935 7.48978445601178 7.94481160494653 7.9520841403096 8.04883953412724 7.39306871285662 9.15256648751837 8.91403101718522 8.64030025208999 8.34899203465887 8.7337067423942 8.73937238540407 8.81682962196403 8.93482055756436 8.26879147108684 8.52575256032679 8.66354513990413 8.02741225061437 8.487741394275 0.156104710646542 0.154675907449795 0.156425960006920 0.156405319903406 0.150892267715360 0.163868065250055 0.156440697295633 0.151207754431175 0.163685047539706 0.153675073797232 0.152661239154688 0.151900177585658 0.1566896457043 0.15029730445508 0.1581641713007 0.15029730445508 0.162455176896631 0.161766013437595 0.154166210897532 2 2|0 +|/ 19495313 19496339 19495849.1 19494316 19496689 + gene protein_coding_gene FALSE TRUE AT2G47490.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT1G25380.1); similar to Os01g0513200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043181.1); similar to Os05g0357200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055296.1); similar to Mitochondrial carrier protein [Medicago truncatula] (GB:ABE84962.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993); contains InterPro domain Mitochondrial brown fat uncoupling protein; (InterPro:IPR002030) -0.194231049428811 -1.75182803995418 0.116114640574009 1 2.12968148532911 16.6177108886462 -0.194231049428811 0.127276381236632
AT1G44575_at 12.3408089628185 12.4234117403422 12.3497401600005 12.3218464069632 12.4368911136304 12.1331582144314 13.2464889878786 13.2836223757857 13.4651052981269 13.3713726015959 13.6957663919198 13.7519577212922 13.5131825178702 13.5819610123344 13.5841812368661 13.6530329577425 13.1894876671713 13.6019390768098 13.1538736145117 0.0765473567984553 0.0744693618418548 0.0806232938720684 0.0772152790981384 0.0737311817080972 0.079624968280418 0.08235924867367 0.0733493994880068 0.0828660364554386 0.0745636275270058 0.0732709715527264 0.0755752185653524 0.0757562107622146 0.0790851746048991 0.0737153992324383 0.0748405587506216 0.077788526566504 0.0774299230169765 0.0732709715527264 1 1|0 +|/ 16874510 16875572 16874913.2 16874136 16875823 + gene protein_coding_gene FALSE TRUE AT1G44575.1|AT1G44575.2 NPQ4 (NONPHOTOCHEMICAL QUENCHING) Encoding PSII-S (CP22), a ubiquitous pigment-binding protein associated with photosystem II (PSII) of higher plants. Involved in nonphotochemical quenching rather than in photosynthesis. Mutant has a normal violaxanthin cycle but has a limited capacity of quenching singlet excited chlorophylls and is tolerant to lipid peroxidation. Identical to Photosystem II 22 kDa protein, chloroplast precursor (CP22) (PSBS) [Arabidopsis Thaliana] (GB:Q9XF91;GB:Q9ST34); similar to Photosystem II 22 kDa protein, chloroplast precursor (CP22) (GB:Q02060); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|Identical to Photosystem II 22 kDa protein, chloroplast precursor (CP22) (PSBS) [Arabidopsis Thaliana] (GB:Q9XF91;GB:Q9ST34); similar to chloroplast photosystem II 22 kDa component [Nicotiana benthamiana] (GB:ABC59515.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.135926320805299 -1.75158014196422 0.116159078710475 1 2.12935505144120 26.0177738673124 -0.135926320805299 0.0550612630622489
AT1G52510_at 9.46897478480268 9.59959160895088 9.16293251592056 9.13661498674736 9.65395073493957 9.46052454756583 10.4344684008375 10.3180725766901 10.2886708007688 10.1824749970929 10.5060181446349 10.4769212042798 10.3216123224108 10.6557092857521 10.4492637893965 10.7330500499432 10.1725356930294 10.5971933483547 9.97408462428109 0.111397515530686 0.108806723554469 0.109114085746472 0.112002471164746 0.109279198515728 0.113579899143795 0.112651820051842 0.102516367619253 0.111041587278789 0.104670354477623 0.105375026684069 0.102916611011186 0.105647782560227 0.105153038693041 0.108639609560413 0.105838169994945 0.111440023668892 0.109602864188491 0.106079447667803 1 1|0 -|/ 19566840 19568080 19567563.889 19565175 19568941 - gene protein_coding_gene FALSE TRUE AT1G52510.1|AT1G52510.2 hydrolase, alpha/beta fold family protein|hydrolase similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G12830.1); similar to Alpha/beta hydrolase fold [Medicago truncatula] (GB:ABE77901.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.130571653758037 -1.75137018513021 0.116196727896204 1 2.12907859394187 19.9731153297765 -0.130571653758037 0.0453637789365771
AT4G04970_at 6.20420676758017 7.22071794863193 5.91803031470423 6.04596112540861 7.47978216319567 6.54942333949851 6.52295559812747 6.71884459713419 6.50294562249665 5.94675905454815 5.8211210905758 6.55034080500232 5.55201631191847 5.76599848595026 5.12913480495732 6.02573044834149 5.05040236379788 5.57406830845761 5.98703137546394 0.290683374348538 0.284891999329737 0.296177740363495 0.289958010447936 0.290080067588703 0.293054243683738 0.290130751225316 0.286911587839940 0.291856390007643 0.293018516873351 0.282556344373646 0.282556344373646 0.289384208405196 0.289568988404201 0.285680559767561 0.282556344373646 0.292168343052389 0.282556344373646 0.282556344373646 4 4 + 2541886 2542394 2542124 2537037 2543129 + gene protein_coding_gene FALSE TRUE AT4G04970.1 ATGSL1 (GLUCAN SYNTHASE LIKE-1); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a gene similar to callose synthase similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL05 (GLUCAN SYNTHASE-LIKE 5), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G03550.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD87286.1); similar to 1,3-beta-glucan synthase component-like [Oryza sativa (japonica cultivar-group)] (GB:BAB84371.1); similar to putative beta-1,3-glucan synthase [Nicotiana alata] (GB:AAK49452.2); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.31517954948056 -1.74989364430621 0.116461820005824 1 2.12713477509281 12.4970803625575 -0.31517954948056 0.241880733751905
AT1G79380_at 10.4465973328211 10.4254216821935 10.8223943577538 10.5826259648451 10.9074863631279 10.3725619582083 10.1697944589580 9.85956966616031 9.88828132598266 9.74426591723428 9.7917825705832 9.72750907281552 9.8991608697144 9.8834218405682 9.3286365192436 10.1136565164298 9.84372857269959 9.72744238876363 9.97952541082057 0.112519066991144 0.110196322207378 0.113835298461029 0.111911405556585 0.105791074346128 0.118520595321443 0.108348409502531 0.110606232120876 0.121311610351467 0.109766756712884 0.110570366598743 0.112637003493971 0.110204644053489 0.108003794084503 0.111707505769878 0.105791074346128 0.109467584907590 0.108631942165044 0.105791074346128 1 1|0 +|/ 29867299 29867859 29867538.333 29865384 29868209 + gene protein_coding_gene FALSE TRUE AT1G79380.1 copine-related similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to Os08g0135400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060941.1); similar to hypothetical protein S250_18C08.19 [Sorghum bicolor] (GB:AAL73530.1); contains InterPro domain Copine; (InterPro:IPR010734); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.182323892561817 1.74970366276547 0.116495969324644 1 2.12688472060781 20.2783605622742 0.182323892561817 0.114833320805562
AT3G08740_at 9.93626281449108 10.1514767999127 9.71796453340916 9.8208299154619 10.0205909677423 9.85803166896133 10.5286009575268 10.5603805483131 10.2935361551140 10.2895283551475 10.4326596922130 10.7458862562059 10.0322702918717 10.1855897448550 11.2044278138016 10.2236955543040 10.0616437855357 10.1300809237821 10.0265775889315 0.101570207156983 0.0936609653197624 0.105306469338273 0.0979382531598025 0.094254732436879 0.0983875079342918 0.0937585898357173 0.0937523978960038 0.0983265644447024 0.0969605947403438 0.0936609653197624 0.096065244382685 0.0939467114426799 0.100673802441487 0.0959778392431947 0.095465037165476 0.102602908106831 0.0951166926731845 0.0995114722096122 3 0|3 /|- 2654798 2655911 2655277.333 2654632 2656245 - gene protein_coding_gene FALSE TRUE AT3G08740.1 elongation factor P (EF-P) family protein similar to elongation factor P (EF-P) family protein [Arabidopsis thaliana] (TAIR:AT4G26310.1); similar to elongation factor P [Synechococcus elongatus PCC 6301] (GB:YP_172255.1); similar to Os11g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065588.1); similar to Os12g0115900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065991.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Elongation factor, KOW-like; (InterPro:IPR013185); contains InterPro domain Elongation factor P/YeiP; (InterPro:IPR001059); contains InterPro domain Elongation factor P; (InterPro:IPR011768); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991) -0.133004141955246 -1.74928894013241 0.116570548367498 1 2.12633890073625 20.3643901711700 -0.133004141955246 0.0502555672989004
AT4G11175_at 9.08977117611273 9.21286930427184 8.84080745143724 8.64047792750014 9.43896471542758 8.62276273988004 10.1872584971389 9.8378766525533 9.3281575604757 9.53637743135958 9.9607997281445 10.1758537391767 9.41175295356945 9.75186851484615 10.1214389633816 9.7826727052293 9.04210056210813 9.5279082261582 9.56478968739696 0.170116651005146 0.167000380506479 0.172692899052087 0.169422850149313 0.157564800449735 0.193692175853173 0.162139437660857 0.157564800449735 0.168083608736116 0.160854482477952 0.166289111946849 0.164831398425337 0.164507933204086 0.167362186708644 0.163302921146422 0.162381420242077 0.172500880388942 0.173119672885097 0.164981754861523 4 4|0 +|/ 6818197 6818760 6818574 6818083 6819038 + gene protein_coding_gene FALSE TRUE AT4G11175.1 translation initiation factor IF-1, chloroplast, putative Identical to Translation initiation factor IF-1, chloroplast precursor [Arabidopsis Thaliana] (GB:O82499;GB:Q56YK9;GB:Q8GY59;GB:Q9T016); similar to Translation initiation factor IF-1, chloroplast precursor (GB:Q94KR7); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain S1, IF1 type; (InterPro:IPR006196); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Translation initiation factor IF-1; (InterPro:IPR004368) -0.225416417312634 -1.7490981697907 0.116604869260279 1 2.12608784464106 18.8329690499506 -0.225416417312634 0.158940925736487
AT3G05230_at 6.23480603839951 6.17543235170026 6.28696008268952 6.50079885942052 5.6307631640093 4.96249335844202 4.90720304062586 5.22937485649158 5.69636349663724 4.57472549512699 5.74363919880011 5.58848968479916 4.32161715028609 5.38409003597308 5.22198509460708 4.76986024288361 4.57054079364982 4.8024236183734 4.30307799620353 0.222905050873277 0.217845019371738 0.240837383074173 0.217562695301248 0.221360879934751 0.239777980132188 0.216996270178397 0.220231480331857 0.226171051534198 0.219892473682526 0.219422370165172 0.218588388366208 0.22816524541948 0.231355613291397 0.226104742658978 0.216785277232204 0.22882742907358 0.218740312679388 0.232720066317052 3 3|0 +|/ 1492360 1493414 1492913.333 1492148 1493625 + gene protein_coding_gene FALSE TRUE AT3G05230.1|AT3G05230.2 signal peptidase subunit family protein|signal peptidase Identical to Probable signal peptidase complex subunit 3 (EC 3.4.-.-) (Microsomal signal peptidase 22 kDa subunit) (SPase 22 kDa subunit) (SPC22) [Arabidopsis Thaliana] (GB:Q9MA96;GB:O65203); similar to signal peptidase subunit family protein [Arabidopsis thaliana] (TAIR:AT5G27430.1); similar to Signal peptidase 22 kDa subunit [Medicago truncatula] (GB:ABD32389.1); contains InterPro domain Signal peptidase 22 kDa subunit; (InterPro:IPR007653) 0.200412429550832 1.74898830928760 0.116624638181207 1 2.12594327212042 10.6951721640110 0.200412429550832 0.134006392633469
AT2G24330_at 5.97169512559029 6.28165292453226 5.57944796129109 6.02771704695995 6.22128581214403 5.58972661728536 6.29530298344335 6.30062822833943 6.09705869940501 5.64320032563712 6.17689734334762 5.96716151261846 5.58534399182217 5.977540082229 5.74065605840164 5.8411575653585 5.03567217675857 5.52328165244265 5.64250826772945 0.213168283560705 0.199360284538978 0.211639296883360 0.216713112673514 0.197962790254735 0.236337024644678 0.198326099396466 0.208289870901762 0.214511037822482 0.203223240094303 0.207090846309132 0.199721000934694 0.203663441865322 0.207644878940290 0.201590748917627 0.199460698821812 0.216326528818172 0.203027758940220 0.201442214391445 2 2|0 -|/ 10354486 10354992 10354701.1 10354240 10356905 - gene protein_coding_gene FALSE TRUE AT2G24330.1 Identical to Hypothetical protein At2g24330 [Arabidopsis Thaliana] (GB:Q9ZQ34); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31080.1); similar to Os02g0631000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047497.1); similar to Os04g0672900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054229.1); similar to H0322F07.6 [Oryza sativa (indica cultivar-group)] (GB:CAH67769.1); contains domain FAMILY NOT NAMED (PTHR22166); contains domain SUBFAMILY NOT NAMED (PTHR22166:SF1) -0.210533711220544 -1.74817452796560 0.116771171659469 1 2.12487248413438 11.7960418685130 -0.210533711220544 0.144364767215412
AT4G25170_at 8.6567321086519 8.41978613921041 7.9567761459938 8.12526952205424 9.06354715042638 8.77494706011559 8.3268263651693 8.04324219704817 8.22101066960584 8.09348375667388 7.9126066323583 7.90197068107702 7.87306963205052 7.693565295234 7.66762969073229 7.77691027099101 7.94234095797033 7.25088307720199 8.24288994182455 0.178008101102619 0.174559940121461 0.194692711484057 0.184445663803995 0.178835347242609 0.180574252192949 0.177918541179440 0.176614090556577 0.184468460637106 0.173145632938676 0.177345315366409 0.177528741211667 0.182719328203867 0.182238127065178 0.183334055176205 0.180096986448 0.187715802872911 0.184130266698326 0.175507587416073 4 4 + 12910676 12911365 12910953.909 12909585 12911590 + gene protein_coding_gene FALSE TRUE AT4G25170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61490.1); similar to putative protein [Oryza sativa] (GB:CAC39077.1); similar to Os02g0657700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047631.1) -0.157467246269299 -1.74761291598662 0.116872398084894 1 2.12413362779726 16.3899742456187 -0.157467246269299 0.0862228086907494
AT4G35230_at 9.12181195464649 9.1158725728712 9.32281876601435 9.38537219908556 9.5080414880127 9.50432864205496 8.37127469816527 8.38314116605138 8.94515692668617 8.92616536411984 8.63943447354888 8.48645761070007 8.55181379182886 8.45129287313907 8.61253579906686 8.55381381310115 8.42882388095248 8.58911900071666 9.07851005370452 0.131410398754252 0.129855297403175 0.131526018672954 0.131137501892863 0.133162561248794 0.136288071019610 0.141452148770060 0.134603494502422 0.149235687959520 0.137173150485994 0.131732702235715 0.137500673195912 0.133359593936890 0.138297907434624 0.133909894827507 0.132893264037411 0.135767243873460 0.137742927519048 0.132399277790540 4 4|0 -|/ 16755363 16756043 16755619 16755123 16758096 - gene protein_coding_gene FALSE TRUE AT4G35230.1 protein kinase family protein similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G59010.1); similar to Os03g0132800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048870.1); similar to protein kinase-like protein [Oryza sativa] (GB:AAG13605.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.118999566534944 1.74757885894780 0.116878539238046 1 2.12408882560566 17.8503021126387 0.118999566534944 0.0110846970216534
AT2G46710_at 7.57628729784255 7.46925641487031 6.75009777655322 6.72367507086168 8.27750031405655 7.85036425590776 8.21677721228872 8.20386996718563 8.66180188907184 8.10925063906822 8.8467967192918 9.16091048032945 8.99414640297992 8.68279161532272 8.81489226590145 9.06823198843336 8.19078780755257 8.41809962422242 9.04538500529069 0.144029086902923 0.139247841459672 0.148945751840219 0.162805788633732 0.137899068660347 0.143643468514565 0.133635971225011 0.141714634504874 0.143113643968483 0.138532437657856 0.135401852778029 0.139427386809632 0.133635971225011 0.140886169122063 0.143158054555522 0.133788418650806 0.138232910771574 0.146965066245865 0.137934332458964 2 2 + 19201043 19201687 19201288.455 19199005 19201919 + gene protein_coding_gene FALSE TRUE AT2G46710.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT4G03100.1); similar to rac GTPase activating protein 2 [Lotus japonicus] (GB:AAC62625.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain Wiscott-Aldrich syndrome, C-terminal; (InterPro:IPR011026); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.149767716754021 -1.74620704689313 0.117126153411509 1 2.12228450746343 16.3222591841030 -0.149767716754021 0.0763729226391389
AT3G07230_at 10.4673939840861 10.6827828564902 10.6315545730046 10.6950467123650 10.8802308867853 10.5188245479882 10.5036173618780 10.6502873957124 10.4086675543435 10.4728813576087 10.8871692169875 10.9554613286312 10.7060511034512 10.5741556964485 10.8280010720995 10.64720796184 10.4097058039741 10.3666580798421 10.5448972147001 0.0883847139354545 0.0855799269245981 0.0867742310025446 0.0870987177156093 0.0837171506811464 0.0966891951560864 0.0829914581278684 0.0852485308916987 0.0908466920949743 0.0867619603764235 0.0824962838807972 0.0827547371999797 0.0831047209862886 0.0832908583985392 0.0853856583852378 0.0824962838807972 0.0928377152140896 0.088951422041613 0.0852705766626345 3 3 + 2299928 2300157 2300039.636 2299780 2300273 + gene protein_coding_gene FALSE TRUE AT3G07230.1 wound-responsive protein-related similar to Os12g0405700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066628.1); similar to Wound-induced basic protein (GB:Q09020); contains InterPro domain Wound-inducible basic; (InterPro:IPR012643) 0.150856510592969 1.74577641836789 0.117203983008949 1 2.12171823365087 21.2023589523520 0.150856510592969 0.077884261999934
AT1G71430_at 4.64456368289697 5.19261642504639 4.8848099900605 5.05568372778681 4.98331605257611 4.73588943973831 4.82342890397962 4.67532680719955 4.38601336368638 4.51717171534895 4.72249696731741 4.76554041711095 4.53459299127899 4.71290817146577 4.5804617701231 4.74824283267931 4.70441131027282 4.56111051935376 4.26680784052287 0.222143133739089 0.217040713983816 0.224526543390334 0.217988367095415 0.213785804134599 0.222970619175179 0.210066799810172 0.215666464320907 0.215347130107870 0.209477930420792 0.212961282508544 0.214932108548226 0.212692027683083 0.214107204454189 0.209477930420792 0.214130310846688 0.219397137278810 0.219034158685426 0.214539769564807 1 1 + 26924266 26924695 26924477.909 26924102 26924814 + gene protein_coding_gene FALSE TRUE AT1G71430.1 similar to Os01g0617800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043585.1) 0.178581915178665 1.74573701568792 0.117211106847338 1 2.12166642232662 9.40256350981203 0.178581915178665 0.111175170593348
AT3G56240_at 12.2033557938235 12.3706888636007 12.5216510278000 12.6286950272439 12.6217037236925 12.3833510501599 12.4923227399364 12.6698457147943 12.5895947394556 12.4859392876219 12.6503958277668 12.7402509091614 12.7811992269658 12.5522656695464 12.0138130932394 13.0222383196649 12.8308255221316 12.5193561930210 12.3172905836076 0.0664184959298604 0.0659764557939214 0.0669537214932352 0.0681619962180371 0.0669736928847684 0.0678935934111516 0.0661850698773433 0.0659764557939214 0.0720663296847301 0.0674847816827499 0.0698145357146401 0.0659764557939214 0.0663598492452961 0.0678523241822224 0.0659764557939214 0.0667886434313618 0.0681832406792979 0.0665602601493669 0.0671738682823089 3 0|3 /|- 20874445 20874870 20874610.3 20874236 20875523 - gene protein_coding_gene FALSE TRUE AT3G56240.1 CCH (COPPER CHAPERONE) CCH protein belongs to a family of eukaryotic proteins that participate in intracellular copper homeostasis by delivering this metal to the secretory pathway; mainly located along the vascular bundles of senescing leaves and petioles as well as in stem sieve elements; hypothesized to have a role in copper mobilization from decaying organs towards reproductive structures, as a result of metalloprotein breakdown. similar to ATX1, metal ion binding [Arabidopsis thaliana] (TAIR:AT1G66240.1); similar to copper chaperone [Plantago major] (GB:CAH59420.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.139657577072063 1.74561498438887 0.117233172144549 1 2.12150596422063 25.0379857253392 0.139657577072063 0.0618619418642417
AT4G13430_at 12.0368771279622 12.0125946816052 11.8761011049626 11.7605668170000 11.9887939856436 11.7572050394305 12.1082090744433 12.1099852236647 11.3504601023142 12.0160021953129 12.1210144214747 12.0760907115377 11.9564920168246 12.2360349029268 12.0187849294681 11.9084416972533 11.9489895582485 12.4753825454002 11.4689324287165 0.0616693559251364 0.0597211634390691 0.0637991265639618 0.0635509321799292 0.0622876363537256 0.0630280516494018 0.0602445360617782 0.0596282223244409 0.0642851114969997 0.0592102788798356 0.0587659052871765 0.0589945094371775 0.0587659052871765 0.0619556542723313 0.0605126190721416 0.0587659052871765 0.0622589454126741 0.0600363519749634 0.0602178786466498 4 4|0 -|/ 7804197 7805660 7804740 7803929 7807867 - gene protein_coding_gene FALSE TRUE AT4G13430.1 aconitase family protein / aconitate hydratase family protein similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to 3-isopropylmalate dehydratase large subunit [Medicago truncatula] (GB:ABE92947.1); similar to Os02g0125100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045743.1); similar to homoaconitate hydratase family protein [Trichodesmium erythraeum IMS101] (GB:YP_722385.1); contains InterPro domain Cis-homoaconitase; (InterPro:IPR006251); contains InterPro domain 3-isopropylmalate dehydratase large subunit; (InterPro:IPR012095); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030) 0.129802907808758 1.74361239436716 0.117595825705767 1 2.11887345187830 23.8085176768422 0.129802907808758 0.044985693371554
AT4G32640_at 7.19585229312195 6.61632841030877 6.4304422813024 6.38051345991016 6.78861395030016 6.20969550871324 6.32816577485788 6.2279832589581 6.43334055609889 6.40842136110097 6.70339718092281 7.35769555475371 7.11739864305524 6.80167780325042 6.7981425432217 6.93119771362194 7.06552115655767 6.47915312344975 6.20715310317345 0.243892866138384 0.233315719517725 0.233606922081418 0.255505304953623 0.234413575492814 0.255702175414669 0.232044722846488 0.242573899215806 0.238596555333558 0.241680236200959 0.236387756828578 0.229854376853667 0.234417258920034 0.251878847138339 0.230780815104222 0.234650226578883 0.248378476821842 0.239302894029830 0.235694193238413 4 4|0 +|/ 15748742 15750524 15749679.1 15742037 15750550 + gene protein_coding_gene FALSE TRUE AT4G32640.1 sec23/sec24 transport protein-related Identical to Putative protein transport protein Sec24-like At4g32640 [Arabidopsis Thaliana] (GB:Q9M081;GB:O65535); similar to CEF (CLONE EIGHTY-FOUR), transporter [Arabidopsis thaliana] (TAIR:AT3G44340.2); similar to Protein transport protein Sec24-like CEF, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93724.1); similar to retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97661.1); similar to Os12g0430000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066677.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.208684245237266 1.74347144541651 0.117621389690677 1 2.11868821519316 13.1504050196734 0.208684245237266 0.143073817624873
AT1G30630_at 9.44189767468418 9.36596109268304 9.47176190939114 9.44764193125371 9.48324486626112 9.01185773389377 9.38866600058581 9.08611010657011 8.38535223576383 9.00125452584168 9.31905588037272 9.4481550243854 8.88163583622449 8.75245532448495 9.43325346115414 8.78317810991057 8.69698139321669 9.10070317498165 8.86846803054698 0.128807403227937 0.126178538478677 0.131010825561877 0.126178538478677 0.127232015777079 0.126927774598203 0.126178538478677 0.128700876947748 0.135112878163419 0.132627385367876 0.133038502738161 0.126178538478677 0.133926285429580 0.138461321970299 0.130190607728439 0.127296932625318 0.135854812079953 0.135144359581936 0.129165407071499 1 1|0 -|/ 10858531 10859474 10858845.556 10858280 10860243 - gene protein_coding_gene FALSE TRUE AT1G30630.1 coatomer protein epsilon subunit family protein / COPE family protein similar to coatomer protein epsilon subunit family protein / COPE family protein [Arabidopsis thaliana] (TAIR:AT2G34840.1); similar to epsilon1-COP [Glycine max] (GB:BAA94964.1); contains InterPro domain Coatomer epsilon subunit; (InterPro:IPR006822); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.166601784888160 1.74230079243519 0.117833911209420 1 2.11714997581368 18.2389521009031 0.166601784888160 0.0979088836498096
AT1G76960_at 10.8901888300442 10.9672719197994 11.6944527476896 11.8500110546337 11.3120850045491 11.0662654574960 9.47525339413272 9.60767061125761 8.61207247619579 8.30200473534476 6.06130689543208 4.04322964594902 8.02795259910095 7.04770201097173 3.84887030168387 6.75050637148546 9.30581263544705 6.67874880904866 7.05192725047242 0.220054926611587 0.210128300057726 0.212774164905156 0.216154711496879 0.217400649530406 0.21154934968794 0.210128300057726 0.213154777166280 0.219291377015207 0.210577574280280 0.221959175627424 0.218893748950749 0.214424674502784 0.211783544919150 0.225578557521067 0.211754896473415 0.212673176493963 0.216808177289044 0.214821075097652 1 1|0 -|/ 28925761 28925778 28925770.111 28925351 28925850 - gene protein_coding_gene FALSE TRUE AT1G76960.1 unknown protein -0.136272309040433 -1.74192921626671 0.117901442054829 1 2.11666181612714 18.0874920337724 -0.136272309040433 0.0568983520039658
AT1G77930_at 10.2687108443642 10.2427623406078 10.9086187428498 10.7986959033797 10.9919075523917 10.5714308698943 11.0167964001449 10.7452184012999 10.6077015236503 10.7216085952536 10.9492115450383 10.5142578674715 10.5137262936664 10.8804661066754 10.4355491563961 10.9630517046399 10.6776713542685 10.5756272708049 10.5306975042685 0.0814236614344642 0.0808115417654424 0.0843656626345904 0.0825988467641448 0.0829603503358446 0.0892854031184739 0.082921816028989 0.082191404222052 0.0900379046667117 0.082564543605036 0.0821040867709033 0.0808115417654424 0.0857668348128483 0.0825299929557834 0.0818564969055408 0.0819017979232465 0.0871483166571085 0.0855778352912107 0.0863171722090522 1 0|1 /|+ 29306587 29307312 29306987.778 29305894 29308464 + gene protein_coding_gene FALSE TRUE AT1G77930.1|AT1G77930.2 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT3G17830.1); similar to DNAJ heat shock protein, putative [Arabidopsis thaliana] (TAIR:AT1G80030.2); similar to Heat shock protein DnaJ-like [Thiomicrospira denitrificans ATCC 33889] (GB:YP_393068.1); similar to Os07g0626400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060336.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.158991945918628 1.74163427140647 0.117955071391325 1 2.11627436266180 21.3473664835803 0.158991945918628 0.0888010924360237
AT2G45790_at 10.3458426086002 10.6019306764455 10.3057510914748 10.4799900523644 9.81258788096222 9.37682931646697 9.94922898395438 10.1127659043472 9.44995915695714 9.84277370698753 9.72796455219063 10.0064885459391 9.49294376912057 9.6109653672911 9.79245014996383 9.54482797127252 8.46378440143138 9.5200773520833 9.48433825773227 0.125801632128220 0.122037777407342 0.129591812269863 0.124898313663327 0.122037777407342 0.129688816831034 0.125365320972452 0.122037777407342 0.131071695159416 0.122374630791967 0.124233479415277 0.123148952747232 0.130053513264652 0.133610904518550 0.125150735116619 0.122571919043141 0.149387951424848 0.122037777407342 0.126145865549352 2 2|0 +|/ 18863644 18864795 18864207.333 18862849 18865092 + gene protein_coding_gene FALSE TRUE AT2G45790.1 eukaryotic phosphomannomutase family protein encodes a phosphomannomutase, involved in ascorbate biosynthesis Identical to Probable phosphomannomutase (EC 5.4.2.8) (PMM) [Arabidopsis Thaliana] (GB:O80840); similar to phosphomannomutase [Glycine max] (GB:ABD97873.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Eukaryotic phosphomannomutase; (InterPro:IPR005002) -0.165535867458583 -1.74140212785027 0.117997297602130 1 2.11596942758328 19.6792632164372 -0.165535867458583 0.096751357868141
AT4G19110_at 8.52379516920173 8.38109658340143 8.3442835132056 8.22340839373209 8.94278328345282 8.09865735488003 8.3151242519815 7.9447199319168 8.2289314968798 8.13639032664065 8.77928868234975 8.6447007004789 8.75267562989933 8.25375483690854 8.37686997665579 8.4959193050076 8.55385955188552 8.21925786545539 8.12713764775527 0.129915184800150 0.125092224851873 0.126332100435538 0.131901114067602 0.126351854080771 0.127601892833008 0.126603376255977 0.126893531857371 0.131300459135430 0.123747173689543 0.121687677806608 0.126778843662645 0.125313643413752 0.127838834758593 0.122424507735239 0.124166473497869 0.130457201163439 0.125845424773411 0.124524487529819 4 0|4 /|- 10454825 10455447 10455154.111 10454508 10459339 - gene protein_coding_gene FALSE TRUE AT4G19110.1|AT4G19110.2|AT4G19110.3 protein kinase, putative similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G45430.1); similar to Os06g0116100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056617.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAO25540.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G45430.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAO25540.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.228243406840233 1.74052520378514 0.118156934137462 1 2.11481768915877 16.6835805480575 0.228243406840233 0.162774597170386
AT3G06010_at 6.07342220346994 6.16602042914464 6.29397249520444 6.14438696087732 6.9050351211663 6.02002885148381 6.46011853918449 6.66755474860914 5.26598138253366 5.64185608365645 6.12604731611336 6.61218191766578 6.01339901735308 6.33124670582032 6.13961132924393 6.37781923395016 5.59727138526424 5.25557995651391 5.90620381458236 0.210671835573578 0.215893197692750 0.211377375514579 0.210272865676743 0.212723320115956 0.212579122523655 0.210154794816096 0.207728900561462 0.223852369419724 0.218872298237713 0.205962432825884 0.210876596189007 0.213331901227492 0.213258295072444 0.210469829176406 0.205305392131541 0.209730553567674 0.215037540823825 0.209090446186153 3 3 - 1802469 1802948 1802780.182 1802441 1807290 - gene protein_coding_gene FALSE TRUE AT3G06010.1 homeotic gene regulator, putative similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT5G19310.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform 20 [Canis familiaris] (GB:XP_867832.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a2 isoform b isoform 10 [Canis familiaris] (GB:XP_859981.1); similar to PREDICTED: similar to SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a4 isoform 17 [Canis familiaris] (GB:XP_867807.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.225520528948678 1.73971923247596 0.118303831159352 1 2.11375935699322 12.1719799359749 0.225520528948678 0.160224335171098
AT2G43550_at 9.7359773570335 9.72639826504573 5.7297548902132 5.35683690141369 7.02829168706665 6.52180283046297 8.15097272993345 7.96594614983363 4.52460617621249 7.40822515780158 8.65312011381275 9.41163251009047 7.89841941085266 8.45154264805194 9.51427473629532 8.4006919778005 7.20546820432148 8.530837169066 6.46514425722603 0.208048328024427 0.205772472099515 0.224606941648614 0.217834038615913 0.197231436270371 0.209682605191251 0.203239191179772 0.197247834535893 0.222177467471579 0.199937916095514 0.200625177053748 0.205392256407595 0.197231436270371 0.202996850086872 0.205313636591654 0.197231436270371 0.202280382281502 0.205146257421896 0.206816758962013 2 2|0 +|/ 18080342 18080698 18080601.6 18080311 18080982 + gene protein_coding_gene FALSE TRUE AT2G43550.1 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. Identical to Putative trypsin inhibitor At2g43550 precursor [Arabidopsis Thaliana] (GB:O22869); similar to ATTI1 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G43510.1); similar to rapeseed putative trypsin inhibitor 1 [Brassica napus] (GB:CAJ44305.1); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.180031116149713 -1.73961812516955 0.118322271028524 1 2.11362660633355 14.8474510397252 -0.180031116149713 0.113469685512970
AT4G26240_at 6.9355251027399 7.05891019744537 7.32040504463394 7.28999127838636 7.03120411044582 6.48636985410928 6.50351433161432 6.39182004728719 5.56462045480291 5.3359969564079 5.34290435193816 5.39543280543438 5.65703897804025 5.4835735650203 5.42202856072535 5.11649199896997 5.61876457864415 5.38653716659539 5.30934013925391 0.26121515064211 0.254152336746442 0.256623074819587 0.250583618137965 0.251077440821536 0.264834564550428 0.253661515619927 0.255789017279388 0.259003355122216 0.250521654970733 0.249133747464516 0.249133747464516 0.256075229386193 0.249133747464516 0.249133747464516 0.250655878086738 0.257142401648652 0.260925929822163 0.253551879283950 4 4|0 -|/ 13287492 13288823 13288272.833 13286785 13288980 - gene protein_coding_gene FALSE TRUE AT4G26240.1 similar to Os01g0559300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043342.1) 0.167038734652455 1.73959344059736 0.118326773386175 1 2.11359419677950 12.2928003379124 0.167038734652455 0.0987274747018125
AT4G29350_at 12.3770899086605 12.5479093665684 12.8905754350752 12.8994729602472 12.7333873319951 12.6562357834493 12.9354908579066 12.9522391247479 12.7749004824777 12.8731435415871 13.1770884618487 12.89374090694 13.0560312456594 13.0036704608298 12.8253031456650 12.9188550880148 12.9380103367921 13.0293925958022 12.8245390507700 0.0789046877016963 0.074887134156377 0.0794150025071618 0.0767229675360456 0.0759058983051743 0.0809379382017303 0.0762299996402254 0.0757623670473202 0.0876280098986833 0.0759375852623463 0.074655835966011 0.074655835966011 0.074655835966011 0.0831691006432242 0.0771601548100798 0.0765093368359502 0.085735634240951 0.0782067443757743 0.0750111725175903 4 4|0 +|/ 14450158 14451085 14450798.1 14450014 14451400 + gene protein_coding_gene FALSE TRUE AT4G29350.1 PFN2/PRF2/PRO2 (PROFILIN 2); actin binding / protein binding Encodes profilin2, a low-molecular weight, actin monomer-binding protein that regulates the organization of actin cytoskeleton. Expressed in vegetative organs. The first intron of PRF2 enhances gene expression. Identical to Profilin-2 (PRO2) [Arabidopsis Thaliana] (GB:Q42418;GB:Q9FS48); similar to PFN1/PRF1 (PROFILIN 1), actin binding [Arabidopsis thaliana] (TAIR:AT2G19760.1); similar to Profilin (Allergen Fra a 4) (GB:P0C0Y3); contains InterPro domain Plant profilin; (InterPro:IPR005455); contains InterPro domain Profilin/allergen; (InterPro:IPR002097) 0.123901367568295 1.73761615408693 0.118687938799306 1 2.11099876064993 25.6512780403174 0.123901367568295 0.0326020101371132
AT2G02560_at 6.66008634059368 7.27987934242136 7.36120898814579 7.15679248493975 7.34716442178502 5.94753163288737 7.06161474550173 6.89504630747838 5.39470321043563 6.34753582236722 6.64384361699649 7.24678625041215 6.36828971104473 6.64637463428359 6.74491695169693 6.88745679815097 6.30819093438507 6.39158131658127 6.10123431613471 0.262392326099677 0.251951589599438 0.249560455298491 0.253826234108273 0.250966466494169 0.268678399578213 0.250413359699867 0.248424717912248 0.269401504718687 0.250032080305839 0.249131315539516 0.243651988881847 0.24744166657815 0.260345207583032 0.259567091880126 0.24894097707263 0.274004604454443 0.261258369416125 0.256308180885488 2 2|0 +|/ 689871 697200 696142 689787 697595 + gene protein_coding_gene FALSE TRUE AT2G02560.1|AT2G02560.2 CAND1 (CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED, HEMIVENATA); binding Arabidopsis thaliana homolog of human CAND1 (cullin-associated and neddylation-dissociated). Putative similarity to TBP-interacting protein TIP120. Ubiquitously expressed in plant tissues throughout development. T-DNA insertion mutant plants were completely sterile and resistant to sirtinol and auxin, but not to gibberellins or brassinolide. Displayed developmental phenotypes similar to those of axr1, namely, short petioles, downwardly curling leaves, shorter inflorescence. similar to KIAA0829 protein [Homo sapiens] (GB:BAA74852.2); similar to PREDICTED: similar to TIP120 protein [Macaca mulatta] (GB:XP_001106780.1); similar to PREDICTED: similar to Cullin-associated NEDD8-dissociated protein 1 (Cullin-associated and neddylation-dissociated protein 1) (p120 CAND1) isoform 1 [Apis mellifera] (GB:XP_393409.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.342936637494375 1.7367971754318 0.118837830504793 1 2.10992411811291 13.264917771139 0.342936637494375 0.268800548987931
AT4G34630_at 9.69490731451158 9.83533605105104 9.96156807793785 9.99722535235285 10.1208413097276 9.4947607839306 10.3212013601203 10.3120506012029 9.21745432399113 9.60403394814917 9.02094650076642 8.79078198269537 9.47518950926917 9.3732712787551 8.60800183625819 9.33918797175921 9.57741292064682 9.2193425035601 9.3283976427479 0.119923310482760 0.120263399055347 0.124459084335840 0.123979864454421 0.128813593199153 0.129432778292215 0.126186299668895 0.128166243791096 0.124405429350291 0.124302687239122 0.129556584803266 0.122629918087293 0.121012692773096 0.124968485106704 0.132643192425132 0.121599968750285 0.133181035179774 0.124521610716672 0.125840678736750 4 4 - 16537127 16537661 16537404.818 16536870 16537751 - gene protein_coding_gene FALSE TRUE AT4G34630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48420.1); similar to hypothetical protein MtrDRAFT_AC149637g23v1 [Medicago truncatula] (GB:ABE88368.1) -0.177526721366579 -1.73502181786645 0.119163364595675 1 2.10759528482037 19.2466424153176 -0.177526721366579 0.111220743730503
AT2G29530_at 7.89261030708156 7.76656916543133 7.55041277318421 7.42752839990321 7.52857974180263 6.72887871098921 7.90056517958473 7.87186547271647 6.88380856527472 7.12433428498176 7.03475659961102 7.63737980695763 6.93801312017988 6.9683321171024 7.42203736046083 7.02486760164176 6.96164049332144 6.88356974597546 6.90957393409886 0.156154844974925 0.158870818151280 0.155921882567428 0.163175733335381 0.163301630611158 0.161769915895071 0.159433536338707 0.163162391651120 0.164227654673013 0.159644623200878 0.16215132675595 0.160712005801620 0.162303194530453 0.154712393727460 0.157100012426593 0.163663382094485 0.173237271834154 0.161709654437648 0.162291316715076 2 2|0 -|/ 12648110 12649282 12648538.444 12647877 12649462 - gene protein_coding_gene FALSE TRUE AT2G29530.1|AT2G29530.2 TIM10 (Arabidopsis thaliana translocase inner membrane subunit 10); protein translocase|TIM10 (Arabidopsis thaliana translocase inner membrane subunit 10) Encodes a small zinc finger-like protein that is a component of the mitochondrial protein import apparatus. Identical to Mitochondrial import inner membrane translocase subunit Tim10 (TIM10) [Arabidopsis Thaliana] (GB:Q9ZW33); similar to small zinc finger-like protein [Pinus taeda] (GB:AAD39957.1); contains InterPro domain Zinc finger, Tim10/DDP-type; (InterPro:IPR004217) -0.206400140264592 -1.73494898378806 0.119176737288564 1 2.10749976618686 14.6240746523907 -0.206400140264592 0.141792119973997
AT1G54410_at 13.5919964495208 13.4738593130267 13.4228418928163 13.4053140228896 13.660792924139 13.5536578535619 13.2024370977508 13.1307538184797 13.3370219398598 13.6802820518995 13.6636044600569 13.6731339513504 13.5384445335848 13.5587598990595 13.3226095052184 13.4230679332372 13.6790006622850 13.4850097138509 13.356975768637 0.0877654730255198 0.085850924326593 0.0851170880375083 0.0870941060895633 0.0869627219467938 0.0901913466271627 0.0840662863189812 0.0865225625866332 0.0875617160951514 0.0855636972678677 0.0850606314888865 0.0867532983407557 0.0851179247069038 0.0862667343134407 0.0842566000434908 0.0844646524417825 0.0840662863189812 0.0848221736480502 0.0863496597746462 1 1 - 20313976 20314242 20314125.545 20313444 20314434 - gene protein_coding_gene FALSE TRUE AT1G54410.1 dehydrin family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G15140.1); similar to water stress induced protein [Brassica oleracea] (GB:AAS77419.1); contains InterPro domain Dehydrin; (InterPro:IPR000167) 0.122875291261095 1.73448047430522 0.119262791205759 1 2.10688537808812 26.930730214421 0.122875291261095 0.0304103998476259
AT3G50660_at 5.39857737898 6.45700997516171 3.84179002956225 4.12876265046442 5.21730658729784 5.33081481136866 5.85271291220524 5.75589373051702 5.87112058342903 6.51045797431167 7.99062976147668 8.31925312037133 7.37860766930031 7.15284636939166 7.33012050468702 7.22786801486354 5.55961635112313 6.45775821667782 6.98559796721833 0.268785726269019 0.267125110308370 0.286327879194328 0.299897525336638 0.274525935343745 0.282845243470045 0.261848216151476 0.26450172406183 0.282468489096683 0.272657909721557 0.268536691078442 0.273657938315128 0.272679649620965 0.282668926851933 0.271124122860799 0.261848216151476 0.288682997718104 0.267481700993546 0.277139290290472 3 3 - 18825246 18826882 18825856.545 18825121 18828225 - gene protein_coding_gene FALSE TRUE AT3G50660.1 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. Identical to Cytochrome P450 90B1 (EC 1.14.-.-) (Steroid 22-alpha-hydroxylase) (Dwarf4) (Dwarf protein 4) (CYP90B1) [Arabidopsis Thaliana] (GB:O64989;GB:Q9SCQ9); similar to CPD (CABBAGE 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G05690.1); similar to steroid 22-alpha-hydroxylase [Zinnia elegans] (GB:BAE16979.1); similar to steroid 22-alpha-hydroxylase [Gossypium hirsutum] (GB:ABJ90340.1); similar to cytochrome P450 [Solanum lycopersicum] (GB:BAF41219.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.257508993437965 -1.73423876936899 0.119307209121512 1 2.10656844193517 12.0642650140977 -0.257508993437965 0.191527885955405
AT1G21190_at 6.14577930228803 6.19706102122798 6.07355315756144 6.43673503557575 6.91244457717463 6.19858009895012 5.79921366531508 6.00745703739732 5.47688287489308 5.43714959962122 5.4068845702905 5.34907525601624 5.46849900845887 5.65410024490606 5.47724309579313 5.83012326578543 5.74349595219814 5.43552343590741 5.58091878020402 0.213497486141333 0.223107972568784 0.213008371298001 0.210950131870045 0.212541185300162 0.215998933877635 0.207916530663138 0.223041881939601 0.216600470283073 0.207916530663138 0.215253632080180 0.210587999299679 0.207916530663138 0.215309128755634 0.209692780159538 0.207916530663138 0.218249778675444 0.214495144894213 0.211696259325832 1 1|0 -|/ 7419989 7420820 7420528.556 7419667 7420892 - gene protein_coding_gene FALSE TRUE AT1G21190.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G76860.1); similar to LSM Sm-like protein family member [Bombyx mori] (GB:NP_001040418.1); similar to Os01g0866700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044909.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.207625739760875 1.73120639479972 0.119865771332597 1 2.10259384692978 11.7433205812241 0.207625739760875 0.143489209949096
AT4G35220_at 7.57812071187132 7.83536262993218 7.65627935966918 7.72508210150862 7.50500392976626 8.10370285980778 6.97395954086293 7.53362103254462 6.9131304404083 7.0626749405403 6.70550430734589 6.80512763815184 7.45350387619152 6.82317209018856 6.94838479564542 7.172382579312 7.70917922553129 7.20240544787955 6.85435799513661 0.214463428343375 0.215143240169051 0.220172516940402 0.219985738333193 0.213711311256541 0.222182484246320 0.212951364652902 0.223111691593282 0.231456152272364 0.219502690663456 0.211235316135021 0.215031118075579 0.216452147019410 0.221858714738786 0.216281430715161 0.211235316135021 0.21267757776019 0.213911874436311 0.216886989884697 4 4|0 +|/ 16752877 16753947 16753406.4 16752576 16754310 + gene protein_coding_gene FALSE TRUE AT4G35220.1 cyclase family protein similar to cyclase family protein [Arabidopsis thaliana] (TAIR:AT1G44542.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC92446.1); similar to Os08g0319900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061523.1); contains InterPro domain Putative cyclase; (InterPro:IPR007325) 0.213160393443776 1.73072938515637 0.119953856720309 1 2.10196889318557 14.6368141642749 0.213160393443776 0.149125393629507
AT2G43760_at 8.81405111334667 8.75391924345715 8.23070210155177 8.48597575882595 9.19138001330016 8.96618539310405 8.55887923669945 8.80135984803277 8.36724527250014 8.6202851650779 8.5566351593559 8.40976003674856 7.88963200301843 8.3013481842416 8.27939681689718 7.99800572483893 7.99236199202846 8.28906989992336 8.49162838765747 0.166318837482070 0.169052413290135 0.168217480680955 0.168284760701332 0.164198979915658 0.171559462404822 0.163935435003866 0.169966728471307 0.18779608360141 0.167429060230567 0.162907250698613 0.173153276988515 0.164770373929815 0.165898474754161 0.173708570436476 0.168220386685041 0.175132904028278 0.167380114664264 0.171012927924226 2 2 + 18140421 18140710 18140571.091 18139751 18141145 + gene protein_coding_gene FALSE TRUE AT2G43760.1|AT2G43760.2 molybdopterin biosynthesis MoaE family protein similar to putative molybdopterin synthase large subunit [Momordica charantia] (GB:CAD80090.1); similar to Os02g0140300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045852.1); contains InterPro domain Molybdopterin biosynthesis MoaE; (InterPro:IPR003448) -0.146009129151078 -1.73024337835893 0.120043665252609 1 2.10133222816483 17.0790961729781 -0.146009129151078 0.0730712832561416
AT1G06060_at 7.6584365435845 7.89693532739682 8.04034055512606 7.7214598334603 8.23494550111295 8.44451772953564 7.62703393352877 7.96748671397653 8.01462085006622 7.81899906338618 8.07458416739757 7.50934260671587 8.05100231364955 7.83408345178463 7.77967101386411 7.83831454515479 7.96468875522958 7.94457851720085 7.76725801184108 0.142069195288014 0.140108894032385 0.143736674673640 0.148933527965759 0.139397955592578 0.139675212090734 0.139397955592578 0.139397955592578 0.145451756200508 0.156643950720842 0.147059721106230 0.147149314459043 0.141976030667672 0.141219730044881 0.148294213172558 0.142599373301748 0.145501772959724 0.140439851721569 0.143039711690969 1 1|0 +|/ 1833454 1834286 1833848.125 1832942 1834860 + gene protein_coding_gene FALSE TRUE AT1G06060.1 RanBPM-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61150.6); similar to Os01g0775600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044411.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53233.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.165208319065271 1.73002178605175 0.120084633677437 1 2.10104196960224 15.8196407571181 0.165208319065271 0.097648721916013
AT1G72890_at 6.93784279333285 7.65260549221113 8.70451832129215 8.7883457414484 8.46651598407466 8.17463917388655 7.84181733826915 7.98831324327069 6.74325049545871 7.27255706253595 6.49584611765254 5.65988274254137 6.71694087168789 6.77812044138056 5.28705048307897 7.50979782185947 7.37598720546173 6.61203861332817 7.22747477304097 0.201146707429769 0.188820640867217 0.194887677609420 0.198362297945833 0.193456725168934 0.198000063289510 0.195262256581640 0.197183811364503 0.203763243183659 0.193853127338294 0.201583528190858 0.198052023905562 0.191410548234187 0.203378899678981 0.227860820972534 0.188820640867217 0.202053412257346 0.194323801767753 0.193955447214325 1 1 + 27434806 27435249 27435046.273 27433608 27435378 + gene protein_coding_gene FALSE TRUE AT1G72890.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72950.1); similar to resistance gene analog PU3 [Helianthus annuus] (GB:AAL07535.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.200862007591554 1.72964555272213 0.120154222125228 1 2.10054918711978 14.8871008347077 0.200862007591554 0.136764201328178
AT4G34710_at 7.11496844435768 8.30237633666392 7.86106855198873 8.38881128755122 5.93854170043938 5.66864470974465 8.58240758854074 8.58014699992208 5.36231096401283 6.59315138816153 5.42493785047078 7.36899835385414 6.60399792681456 6.61984472345488 6.93208202628105 7.7185261933314 7.10938606168636 5.702930554177 6.34609623998274 0.202248870740952 0.202120451276121 0.205312237593175 0.206490317940879 0.198894963938989 0.209142147764659 0.205381832927101 0.199926861272657 0.206428685067914 0.207862207031827 0.202843049426751 0.199836570368276 0.205802325390322 0.203712203645603 0.200497045861958 0.199460227204185 0.205766162267411 0.203873736657243 0.210377088938831 4 4 - 16560322 16560894 16560535.818 16560067 16562974 - gene protein_coding_gene FALSE TRUE AT4G34710.1|AT4G34710.2 ADC2 (ARGININE DECARBOXYLASE 2) encodes a arginine decarboxylase (ADC), a rate-limiting enzyme that catalyzes the first step of polyamine (PA) biosynthesis via ADC pathway in Arabidopsis thaliana. Arabidopsis genome has two ADC paralogs, ADC1 and ADC2. ADC2 is stress-inducible (osmotic stress). Double mutant analysis showed that ADC genes are essential for the production of PA, and are required for normal seed development. Overexpression causes phenotypes similar to GA-deficient plants and these plants show reduced levels of GA due to lower expression levels of AtGA20ox1, AtGA3ox3 and AtGA3ox1. Identical to Arginine decarboxylase 2 (EC 4.1.1.19) (ARGDC 2) (ADC 2) (ADC-N) (SPE2) [Arabidopsis Thaliana] (GB:O23141); similar to ADC1 (ARGININE DECARBOXYLASE 1) [Arabidopsis thaliana] (TAIR:AT2G16500.1); similar to ar (GB:AAR08423.1); similar to ar (GB:AAF26434.1); similar to ar (GB:AAF26435.1); contains InterPro domain Orn/DAP/Arg decarboxylase 2; (InterPro:IPR000183); contains InterPro domain Arginine decarboxylase; (InterPro:IPR002985) -0.298069924700183 -1.72962824377662 0.120157424502231 1 2.1005265173405 13.9474244483900 -0.298069924700183 0.229667689197898
AT4G34030_at 7.95669673415231 7.99959874359724 7.98181507717 7.50493833557317 8.41748200546833 8.0252342386761 8.08202936852595 7.73866042715565 8.19996868853968 8.51163729376895 8.06692538873835 8.05305308712048 7.8894672953103 8.02976841890151 8.12834945165038 8.05337887464425 8.12876997004036 7.83789997974066 8.59665858745738 0.137438096215546 0.136456646564803 0.138795599774327 0.143442683837979 0.139402208117549 0.143030160480178 0.135421579633277 0.143572096205623 0.148841154946517 0.137657558874370 0.139129735390344 0.131481916831351 0.137872167214185 0.141350383758231 0.138389887236306 0.133673873821196 0.153601803712812 0.135499517554975 0.137488066599110 4 4|0 +|/ 16303030 16303900 16303549.625 16301184 16304104 + gene protein_coding_gene FALSE TRUE AT4G34030.1 MCCB (3-METHYLCROTONYL-COA CARBOXYLASE); biotin carboxylase MCC-B is involved in leucine degradation in mitochondria. The active protein is a dimer of MCC-A and MCC-B. MCC-A is biotinylated whereas MCC-B is not. Identical to Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial precursor (EC 6.4.1.4) (3-Methylcrotonyl-CoA carboxylase 2) (MCCase subunit beta) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit beta) (MCCB) [Arabidopsis Thaliana] (GB:Q9LDD8;GB:O49501;GB:Q94F35); similar to putative methylcrotonyl-CoA carboxylase beta chain, mitochondrial precursor [Oryza sativa (japonica cultivar-group)] (GB:BAC99804.1); similar to CG3267-PA [Drosophila melanogaster] (GB:NP_652724.1); similar to Methylmalonyl-CoA carboxyltransferase 12S subunit, putative [Aedes aegypti] (GB:EAT33766.1); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, C-terminal; (InterPro:IPR011763); contains InterPro domain Carboxyl transferase; (InterPro:IPR000022); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, N-terminal; (InterPro:IPR011762) -0.187257767894803 -1.72944023014694 0.120192214533127 1 2.10028027944481 16.1930767403850 -0.187257767894803 0.12249196742084
AT2G36810_at 7.13618865060787 7.01167391165722 7.17817334958513 6.92336916451119 7.26089244306833 6.95687779438803 6.96744446243574 6.8721584280458 6.47095415441239 7.02117739552248 7.13154405017115 7.27951380383143 6.84925860876392 7.10864156591567 6.95501538998619 7.31657288658518 6.71165912317613 6.92279596499164 6.98147386202536 0.207191581549373 0.207347620297314 0.209734587021393 0.210411093607972 0.204476066533812 0.227098782637149 0.211160431061498 0.208546174541152 0.22082399303691 0.211263233734916 0.203899637853583 0.206163760388884 0.215251092001459 0.207972031682775 0.215514356801956 0.205703171351286 0.208583741510321 0.210382302184997 0.217552367928067 2 2|0 -|/ 15432922 15434070 15433277.6 15432818 15443960 - gene protein_coding_gene FALSE TRUE AT2G36810.1 binding similar to Hypothetical protein [Oryza sativa] (GB:AAK98733.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.146400930779547 1.72859083884944 0.120349502241561 1 2.09916799176295 13.9678024312863 0.146400930779547 0.0738141391462561
AT1G06470_at 6.55873011991193 6.76696528380138 6.92368794143697 6.77189771358298 7.70098810033307 7.12603374972683 7.19995982863559 6.86716128786675 6.4782182540939 6.29869750627638 6.47126799994768 6.40920209372672 6.16297055061743 6.64548588693047 6.22907408166475 6.41769906898463 5.80011868832703 6.28915380871271 5.85238071016156 0.206532667533718 0.198245028295175 0.207013503242534 0.203557930852811 0.202249275089527 0.207509515914843 0.207827422890989 0.198245028295175 0.20729923151806 0.204818797553791 0.204448404802659 0.203743329540773 0.210459992745413 0.212057957948754 0.204179103245882 0.200785696984634 0.224634273282586 0.207251039038735 0.207716410969372 1 1|0 +|/ 1972054 1973221 1972544.3 1969728 1973766 + gene protein_coding_gene FALSE TRUE AT1G06470.1|AT1G06470.2 phosphate translocator-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT3G14410.1); similar to Os06g0153200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056840.1); similar to Os01g0749900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044249.1); similar to phosphate translocator-related-like [Oryza sativa (japonica cultivar-group)] (GB:BAD86978.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.187901889201347 1.72834204493209 0.120395609253595 1 2.09884223795479 13.2458715094325 0.187901889201347 0.123310346997867
AT2G26460_at 5.1557790944356 5.3691735171133 5.66916511073444 6.03986382617855 6.21766836162839 5.8603190888508 5.7232670867036 5.3833644347853 4.91030681593661 4.77824978315902 4.15080963432292 4.63792872829385 4.66429295810068 4.73471108272091 4.47016679614162 4.58479428070009 4.60730973156248 4.73743054247827 4.57799191692871 0.234416004285538 0.240675124546596 0.24151968459464 0.238085963941049 0.253430052359609 0.237514197033640 0.248838147041381 0.234416004285538 0.238527994675663 0.234416004285538 0.234416004285538 0.238407856410118 0.244350782137477 0.234416004285538 0.241125263352012 0.234416004285538 0.242257093184785 0.239166703512837 0.237161482425743 2 2 - 11262140 11262764 11262447.909 11262010 11266051 - gene protein_coding_gene FALSE TRUE AT2G26460.1 RED family protein similar to Os11g0146700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065737.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96454.1); contains InterPro domain RED-like, N-terminal; (InterPro:IPR012916); contains InterPro domain RED-like, C-terminal; (InterPro:IPR012492) 0.178386180435293 1.72802998545452 0.120453463914659 1 2.09843367717927 10.3417983857029 0.178386180435293 0.112975279343037
AT2G25900_at 10.5667196147904 10.7604576994845 9.65707790699995 9.87126083032975 11.0979522936399 10.8036430889682 10.6228663041034 10.7223483814932 10.4818356411005 10.1452035246795 10.3800535209156 10.9678139667836 10.2966158043653 10.5193831193328 10.4719092770297 10.631706898593 9.88074333452018 9.82367290141309 10.4318389601104 0.120841188803294 0.115332850577578 0.121328490992365 0.118765206355109 0.115253956844786 0.123879679555937 0.114497317407855 0.114497317407855 0.120037166214186 0.121696138670418 0.124614277281071 0.114497317407855 0.118680193519421 0.124330814567136 0.122411643754777 0.115088188973819 0.136883889064144 0.123180895468040 0.116461709609173 2 2 + 11049331 11049703 11049539.909 11048796 11050249 + gene protein_coding_gene FALSE TRUE AT2G25900.1 ATCTH (Arabidopsis thaliana Cys3His zinc finger protein); transcription factor putative Cys3His zinc finger protein (ATCTH) mRNA, complete similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G19810.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.146043246205523 -1.72782375718685 0.120491712002210 1 2.09816369236745 20.8750141290591 -0.146043246205523 0.0734052439889318
AT1G49400_at 5.97898921925198 6.04903157664383 5.992519889562 5.94744597715393 6.65939175229494 5.68752407585468 6.67152773629396 6.67602048638393 4.79280940057712 5.37140353192739 6.19481935221368 6.16764574783684 5.72203092166408 5.68432730660296 6.31562858819428 5.52673645694888 5.84253688975767 5.54018130524954 5.24587971083003 0.230161224610433 0.214877297153762 0.215068099180999 0.218076052628929 0.217063493691803 0.217955449045565 0.228037792229036 0.222216322758419 0.228727439803126 0.216903537139318 0.216042602153349 0.215795969509062 0.221259348625483 0.223203451942832 0.217435947276968 0.216161391431756 0.223372417737465 0.220968993561020 0.221615431854798 1 1 + 18286826 18287196 18286937.091 18286700 18287870 + gene protein_coding_gene FALSE TRUE AT1G49400.1 EMB1129 (EMBRYO DEFECTIVE 1129); structural constituent of ribosome similar to ribosomal protein S17 family protein [Arabidopsis thaliana] (TAIR:AT3G18880.1); similar to ribosomal protein S17, putative [Medicago truncatula] (GB:ABE91522.1); similar to Os08g0359600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061632.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) 0.232684471176639 1.72721664801153 0.120604374732401 1 2.09736897312470 11.7132742735982 0.232684471176639 0.168804562007136
AT2G48070_at 7.82895922363557 7.7418828319212 7.15289721184113 7.40664519165526 7.41577971804474 7.57189451158509 7.82232751906018 8.27820917111914 8.5046508014922 8.14962311787498 8.2931598058861 8.62020440741792 8.28758033740297 8.51999959135681 8.85669021119849 8.66062275958965 8.17979214773806 8.33298559030118 8.13773019102878 0.157752728973884 0.156509444390383 0.154072986680238 0.156082918415108 0.155501250307148 0.160916101213470 0.160658070981481 0.160220144753397 0.160131508289055 0.153529301820357 0.151530500017446 0.150898570141996 0.155229763433678 0.157533405838226 0.159192660924353 0.154374841042183 0.170193774375549 0.150705439801505 0.155230432639878 2 2 + 19669974 19670700 19670336 19669914 19671535 + gene protein_coding_gene FALSE TRUE AT2G48070.1|AT2G48070.2 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55449.1); similar to Os05g0404400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055503.1) -0.163081270961531 -1.72706714441079 0.120632133453629 1 2.09717328816945 16.0187647856045 -0.163081270961531 0.0954424703198328
AT3G47540_at 7.27113072501599 7.1904036852758 8.14619665398283 8.67697952438177 6.46546096806308 6.47221976070224 7.53257412653095 8.00506826135055 5.67205538066267 7.59249982635212 6.40486740593803 5.18369773175407 6.27109150011121 6.00406247215875 5.79301289602265 6.74145265609577 7.88038232810976 6.9351628111076 6.89079677645979 0.224987126970862 0.228595773958610 0.228944546492048 0.229228713164313 0.226485841261154 0.239408677596275 0.234668781766743 0.224987126970862 0.255066777529882 0.224987126970862 0.224987126970862 0.229574274963761 0.233431179240729 0.240710586401926 0.240629340334309 0.224987126970862 0.235540882826123 0.241217342533023 0.224987126970862 3 3 + 17532085 17532946 17532559.636 17532014 17533254 + gene protein_coding_gene FALSE TRUE AT3G47540.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT2G43590.1); similar to Basic endochitinase CHB4 precursor (GB:Q06209); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) -0.188157204378404 -1.72672150477016 0.120696331925883 1 2.09672090922282 14.0300876563231 -0.188157204378404 0.123772646712154
AT4G11110_at 5.39285287736523 5.40565512939648 5.42837273658561 5.06858047367971 6.22141243395121 5.73680261653069 5.83128953140847 5.91103653338131 5.24179227273331 5.26587029462242 5.73833321073275 5.75403274216978 6.12844991805529 5.86500515781806 4.96997777541295 5.99288460030515 5.50452270009125 5.28617685245577 5.36405491505598 0.194842785734746 0.19176900941927 0.195569375461985 0.193329835362004 0.189514863302325 0.195757715183022 0.193169846744500 0.205780210215095 0.217397898597278 0.196971488173968 0.189514863302325 0.191116968229699 0.196146087252371 0.199080179450100 0.200324306518281 0.194129321698700 0.208558422293875 0.199281429792838 0.193891965525664 4 4|0 +|/ 6775723 6776614 6776074.3 6771601 6777221 + gene protein_coding_gene FALSE TRUE AT4G11110.1 SPA2 (SPA1-RELATED 2); signal transducer Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. similar to SPA1 (SUPPRESSOR OF PHYA-105 1), signal transducer [Arabidopsis thaliana] (TAIR:AT2G46340.1); similar to Os05g0571000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056370.1); similar to Os01g0725800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044115.1); similar to hypothetical protein DDBDRAFT_0219336 [Dictyostelium discoideum AX4] (GB:XP_636746.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.171466961395908 1.72618860497972 0.120795373778336 1 2.09602351787817 11.0972479734210 0.171466961395908 0.105381712420060
AT3G09090_at 6.48489285156455 6.87703302697236 6.09375558506196 6.49946295830093 6.65317209938145 6.33280765747588 6.51125549069123 6.94927474422368 6.08592974256803 5.95837242240299 5.86784745337748 6.224018075321 6.07776405852609 5.784478128571 6.33210161741435 6.16543773296635 5.89598117398683 6.16195651157051 6.4096317137846 0.280788771621244 0.281849155419689 0.283559392487919 0.288262435003193 0.286869021393619 0.291526507745585 0.286401780089538 0.279041279520987 0.304317327609932 0.277308431388133 0.279090544777812 0.276895685368511 0.283926436161553 0.273225378854452 0.287030164612907 0.275437180517769 0.299556584597386 0.291142394892367 0.271783352846968 3 3|0 -|/ 2782920 2783654 2783223.667 2782703 2787809 - gene protein_coding_gene FALSE TRUE AT3G09090.1 DEX1 (DEFECTIVE IN EXINE FORMATION 1) Encodes DEX1 (defective in exine formation). Required for exine pattern formation during pollen development. similar to hypothetical protein Tb927.7.6460 [Trypanosoma brucei TREU927] (GB:XP_826257.1); similar to Os03g0825700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051758.1); contains InterPro domain FG-GAP; (InterPro:IPR013517) -0.199213826129868 -1.72616471809399 0.120799815027395 1 2.09599225994903 12.6577114951516 -0.199213826129868 0.13547722621192
AT1G16010_at 8.48714448706566 8.42903764841747 8.64653704296051 8.62693711638055 8.77440940889145 8.62351042939014 8.32913111986112 8.44912245742529 7.53876117695766 7.82489460632942 7.629209689915 7.68085804631574 8.04154426548372 7.68032933621466 7.31686884660014 8.21014517241381 8.1935594991615 7.49070947892466 7.96621391981997 0.16162446419158 0.160281150594063 0.169307537770052 0.15844046168081 0.162546220016156 0.169732116095263 0.157328702011681 0.161061934047368 0.170298390382217 0.160341850443315 0.162738678631116 0.157794576906685 0.160425794447895 0.162182772809992 0.16667113140378 0.161253663964720 0.173126313789829 0.165335136125216 0.162377408853276 1 1 - 5495484 5496138 5495814 5495367 5497714 - gene protein_coding_gene FALSE TRUE AT1G16010.1|AT1G16010.2 magnesium transporter CorA-like family protein (MRS2-1) similar to magnesium transporter CorA-like family protein (MGT1) (MRS2) [Arabidopsis thaliana] (TAIR:AT1G80900.1); similar to magnesium transporter CorA-like family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98804.1); similar to Os06g0650800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058223.1); similar to Os04g0501100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053227.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) 0.124009689361456 1.72602163086224 0.120826422166305 1 2.09580502261371 16.3242418519229 0.124009689361456 0.0350105388386580
AT4G04850_at 8.06847480373422 7.79473336902519 8.16494624282576 8.12556096534687 8.67842625643613 8.05383383788131 8.90570946207005 8.67559861205053 8.18781966126012 7.67413129468204 8.37791834668522 8.17752112849821 8.20569365399846 8.48638836618077 8.16708612834153 8.5641805370764 8.45366066853968 7.96898431377249 7.58859594942326 0.127774339482724 0.124366290351506 0.127616260829457 0.127873229218224 0.125743812636357 0.133797229003797 0.123306226084429 0.127211857522168 0.131768345413690 0.134931272287214 0.122060336711058 0.122456644658404 0.125891161920238 0.121893308778275 0.125821833612896 0.121893308778275 0.127143775761059 0.132372259146464 0.129606405747476 4 4|0 +|/ 2455969 2456808 2456396.5 2453794 2457765 + gene protein_coding_gene FALSE TRUE AT4G04850.1 KEA3 (K+ efflux antiporter 3); potassium:hydrogen antiporter member of Putative potassium transporter family similar to KEA2 (K+ efflux antiporter), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT4G00630.1); similar to TrkA-N [Medicago truncatula] (GB:ABE84788.1); similar to Os12g0617800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067289.1); contains InterPro domain TrkA potassium uptake protein; (InterPro:IPR006036); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153); contains InterPro domain TrkA-N; (InterPro:IPR003148) 0.188946469166988 1.72568452214492 0.120889129155897 1 2.09536392432294 16.3669244993421 0.188946469166988 0.124737756751125
AT4G22360_at 7.71172909863267 8.13390045552177 7.6178402251592 7.86864056692686 8.09077046652932 8.03352169590422 7.85185542992307 7.7866878538437 7.53419706167325 6.81875214889309 6.64303402482774 6.76632257261225 7.09711980780054 7.09054461323594 5.98243266401019 7.04779270122521 7.05798371308208 6.71919138034271 7.07681212678126 0.209778021517797 0.207394785482698 0.211798925195633 0.215157827411866 0.211543977975438 0.214950033142836 0.207393478014508 0.208736593640401 0.219309298109431 0.209909680171648 0.210925394578108 0.213984205088771 0.216143816004375 0.211480083137966 0.208578904761888 0.207393478014508 0.21873462555929 0.210225666252357 0.21183379560022 4 0|4 /|+ 11808955 11809645 11809231 11807672 11810129 + gene protein_coding_gene FALSE TRUE AT4G22360.1 SWIB complex BAF60b domain-containing protein similar to SWIB complex BAF60b domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19080.1); similar to SWIB complex BAF60b domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99032.1); similar to Os08g0502800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062171.1); similar to Os04g0665500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054177.1); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121) -0.155525532662094 -1.72544155833722 0.120934342552280 1 2.09504603543992 14.8587714559341 -0.155525532662094 0.0862940340230774
AT1G65490_at 10.2469870909589 10.5646643723170 11.4949038945632 11.5039798080926 10.5195051010715 10.4882131001082 11.5992852601252 11.6632235589213 11.5443448239192 11.4631939979727 11.4754403080195 11.1583188596716 11.1626906420504 11.6704696672148 10.4796898688787 11.5951874346343 11.1335584266841 11.2661461135577 11.4766479773661 0.0800168545822369 0.0774526931079316 0.0813289261820502 0.0782156554042341 0.0774022254971803 0.0854478518117137 0.0768517981638045 0.0817406876169898 0.0823797830398956 0.0784444032745997 0.0788316431028299 0.0801347625652448 0.0779031618479471 0.0770028870504842 0.0820132094821325 0.0793831980500292 0.0820256423959927 0.0858422434011839 0.079576527988908 1 1 + 24358465 24358811 24358675.727 24358434 24359014 + gene protein_coding_gene FALSE TRUE AT1G65490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G65500.1) -0.134465431309422 -1.72291909685957 0.121404676366008 1 2.0917468463141 22.3788035723572 -0.134465431309422 0.0563607246051482
AT1G31730_at 7.63113004291017 8.07634317032351 7.55856005054638 7.48754721507033 8.0308987460794 7.0524014431782 7.82508451175529 7.80934237463809 6.90324103335813 6.77661334422062 8.08507084768434 8.05645838507591 8.1459410243299 7.34980226389126 7.72104732415285 7.8374544020198 7.2987606609935 6.71995277147537 6.86361843361288 0.201782520892849 0.191251485635412 0.197611480628643 0.193685369699201 0.191326745987474 0.206319974602471 0.194024438441246 0.197174141626096 0.202983326753426 0.195114590540643 0.196453744018845 0.193340882343955 0.192688257883807 0.204802400167254 0.198551864469908 0.191251485635412 0.217737760664217 0.203140584471273 0.192540687465163 1 1 + 11363307 11363748 11363561.909 11359623 11364269 + gene protein_coding_gene FALSE TRUE AT1G31730.1 epsilon-adaptin, putative similar to GAMMA-ADAPTIN 1 (GAMMA-ADAPTIN 1), clathrin binding [Arabidopsis thaliana] (TAIR:AT1G23900.2); similar to Os01g0916200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045192.1); similar to Vesicle coat complex AP-3, delta subunit (ISS) [Ostreococcus tauri] (GB:CAL57153.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.250431764183733 1.72256926485725 0.121470039018456 1 2.09128945808331 14.9337310594877 0.250431764183733 0.186462873946078
AT1G53460_at 5.9274989845218 6.5812734200278 6.13674508815776 6.62949522709105 7.01293717329718 6.78880689170204 6.56061512729315 6.7815491795543 6.84966878108036 6.36609111500766 6.18192029478949 5.83739825365044 5.78851837788469 5.97433778611207 6.26038188254822 6.62891473317315 6.68657835622802 6.06550176931638 7.14422380076465 0.222222216980298 0.220568223896152 0.221768658712819 0.222572873779188 0.214474219690336 0.218500107966433 0.219009220772018 0.218172914585959 0.212854538257227 0.230523659138994 0.224598512363965 0.221832817830238 0.215173472465016 0.210648189625209 0.214822514475343 0.220128754793839 0.218196538566132 0.21472184597689 0.221084945789592 1 1 - 19958235 19959716 19958516.273 19958158 19960300 - gene protein_coding_gene FALSE TRUE AT1G53460.1 similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT1G55040.1); similar to Zn-finger in Ran binding protein and others, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95671.1); similar to Os03g0712200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051062.1); similar to Os01g0203300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042331.1) -0.214727691679333 -1.72197358286109 0.121581411287401 1 2.09051072599786 13.0346677184541 -0.214727691679333 0.151782846106656
AT4G30690_at 9.6357850958555 9.51670347744498 9.32170598453137 9.09390842055203 10.3849725475861 9.84545608577876 9.22321290214699 8.9027016277465 10.1353101776758 9.98327440583668 10.3895763433427 10.1484888896525 9.965100243406 10.0455818965987 10.1709440882011 9.98657304212846 9.7442441824428 10.0094933233305 9.9901925921642 0.131296658666233 0.129412326411358 0.136763500653199 0.134643603094387 0.129897453528595 0.138688576131837 0.127979940698116 0.129934292438247 0.137587874733837 0.135735470909905 0.130109077908034 0.125708908375284 0.131572661721165 0.13442400299056 0.131569541593289 0.125708908375284 0.138837234055733 0.135850184617723 0.129043923363196 4 4|0 +|/ 14960994 14962241 14961785.125 14960692 14962472 + gene protein_coding_gene FALSE TRUE AT4G30690.1 translation initiation factor 3 (IF-3) family protein similar to translation initiation factor 3 (IF-3) family protein [Arabidopsis thaliana] (TAIR:AT2G24060.1); similar to Initiation factor 3 [Medicago truncatula] (GB:ABE79490.1); contains InterPro domain Initiation factor 3; (InterPro:IPR001288) 0.181575588196251 1.72056384371672 0.121845361225780 1 2.08866824837160 19.5374354225536 0.181575588196251 0.117355773553297
AT4G24530_at 5.54650357354941 5.77133724896064 4.6634359613612 5.11070774551743 5.75408168464281 5.54163752043304 5.51806529191129 5.85241513170439 5.5335430625803 5.5661013600353 5.67231641347688 5.836906791522 5.25577032971217 5.78824553223957 5.51757995161638 5.42074802923690 5.58878147627401 5.73125451201494 5.54271404329404 0.260536376099220 0.263080462667732 0.284019434096961 0.264512550258090 0.259388713821062 0.275075936784621 0.267962755202166 0.261182445967086 0.279452736778164 0.262221186690188 0.257208457677862 0.257208457677862 0.258634185548805 0.259351208000734 0.263193729386007 0.257208457677862 0.264603889965466 0.275928913665552 0.264630693596131 4 4 - 12667451 12667909 12667717.182 12667368 12670023 - gene protein_coding_gene FALSE TRUE AT4G24530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65470.1); similar to putative auxin growth promotor protein [Lycopersicon esculentum] (GB:AAK84479.1); similar to Os09g0412200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063155.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.175308513000545 -1.71983022425238 0.121982928850397 1 2.08770969474535 11.0442246205008 -0.175308513000545 0.110474032357715
AT1G71040_at 10.8294081269174 11.0453987633065 11.3381022303339 11.3901280596837 11.0352058057876 10.8094011291818 10.6546704635155 10.5246652572363 10.3034257493069 10.2717810559779 10.2183789996268 9.9273471349206 10.2381296707494 10.4087090651487 9.3821744505414 10.1315201725149 10.4025484965199 10.0740606561663 10.0415963128602 0.105414860397108 0.101326560441431 0.101075655967845 0.103797385667403 0.102306100255165 0.105955259344523 0.101075655967845 0.103127113750935 0.115630396034801 0.101179960113412 0.104222532862021 0.103773160255134 0.105202425046967 0.103259301755017 0.112745925200822 0.102030960591952 0.108421591708861 0.111389173229750 0.102419688240906 1 1 - 26800866 26801538 26801210.364 26800628 26803984 - gene protein_coding_gene FALSE TRUE AT1G71040.1 multi-copper oxidase type I family protein similar to multi-copper oxidase type I family protein [Arabidopsis thaliana] (TAIR:AT1G23010.1); similar to Os01g0126100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041895.1); similar to putative spore coat protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAB21194.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) 0.135965597447337 1.71977767902259 0.121992787596220 1 2.08764104553163 21.1051022895729 0.135965597447337 0.0592564407756803
AT3G07040_at 5.29332696710262 5.6657341998301 5.30925800530065 5.29759173847438 5.49142027828987 5.21928230536648 4.810796430726 5.13690954455563 4.48304979593868 4.39844644063085 4.35542016582871 4.95477233078874 4.73093962776353 4.51859323278372 4.42088182599652 4.70314397775161 5.07327138439893 4.64008943310490 4.46475494812465 0.236365953617150 0.223705571986513 0.226638478024521 0.223705571986513 0.236375969003834 0.233597065575253 0.223705571986513 0.229007628774277 0.233384967470639 0.226477861772218 0.223705571986513 0.223705571986513 0.223705571986513 0.230513350853497 0.233870350661746 0.223705571986513 0.234289142945717 0.228191654776807 0.234235752943372 3 3 - 2226254 2226756 2226545 2225958 2229030 - gene protein_coding_gene FALSE TRUE AT3G07040.1 RPM1 (RESISTANCE TO P. SYRINGAE PV MACULICOLA 1) Contains an N-terminal tripartite nucleotide binding site and a C-terminal tandem array of leucine-rich repeats. Confers resistance to Pseudomonas syringae strains that carry the avirulence genes avrB and avrRpm1. Identical to Disease resistance protein RPM1 (Resistance to Pseudomonas syringae protein 3) (RPM1) [Arabidopsis Thaliana] (GB:Q39214); similar to disease resistance protein (CC-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G35450.1); similar to putative NBS-LRR type disease resistance protein [Prunus persica] (GB:AAT09451.1); similar to disease resistance gene homolog 9N [Brassica napus] (GB:AAC99466.1); similar to disease resistance gene homolog 1A [Brassica napus] (GB:AAC99464.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.164292449354140 1.71930622129910 0.122081277370182 1 2.08702513710286 9.83973462980579 0.164292449354140 0.0977769705573998
AT3G16240_at 10.8830003548020 11.1803667171799 10.1982731588692 10.3921959794030 11.5783978365713 11.4008504011444 10.7628877602027 10.9692561271437 12.4016320807911 11.7799354659072 13.1970978982709 12.9266489108196 12.8188441618059 12.4208575374722 12.9303321770437 12.3072264181104 11.5725982713589 12.8437594184736 12.6419400049868 0.0951929759029813 0.0909917113509347 0.100437694408041 0.0993179559265068 0.0920654872337058 0.0944605326592043 0.0934850856775603 0.0924571487289186 0.105291475486611 0.0937865888967188 0.095811015065948 0.0920662627990458 0.0909917113509347 0.0970096497011482 0.097980456922753 0.0909917113509347 0.0958846482033392 0.0946939749259913 0.0925218449308 3 3 + 5505817 5506739 5506294.818 5505410 5507056 + gene protein_coding_gene FALSE TRUE AT3G16240.1 DELTA-TIP (delta tonoplast integral protein); water channel Delta tonoplast intrinsic protein, functions as a water channel and ammonium (NH3) transporter. Highly expressed in flower, shoot, and stem. Expression shows diurnal regulation and is induced by ammonium (NH3). Protein localized to vacuolar membrane. Identical to Aquaporin TIP2.1 (Tonoplast intrinsic protein 2.1) (Delta-tonoplast intrinsic protein) (Delta-TIP) (TIP2.1) [Arabidopsis Thaliana] (GB:Q41951;GB:Q42200;GB:Q42201;GB:Q43352;GB:Q8VZ81); similar to DELTA-TIP2/TIP2,2 (tonoplast intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT4G17340.1); similar to delta-VM23 [Raphanus sativus] (GB:BAA31452.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.148109843052961 1.71794347205814 0.122337391253642 1 2.08524526766633 23.3714901001134 0.148109843052961 0.077420217632446
AT1G80040_at 8.49202993059163 8.3123749334799 8.55715104506466 8.59902209017089 8.53148740433561 8.44417058211663 8.13494145988492 8.50813167320554 8.16246045980597 8.13988575500133 8.06985580580938 8.27465485891848 8.50642768230808 8.29417875272538 8.36953907011676 8.53876526197343 8.09907804264324 8.00673741794381 8.14872954766842 0.131413122842768 0.136654010346156 0.143857812232699 0.145137294177119 0.135912701768478 0.139067706390364 0.146398173883807 0.141754188062441 0.149037617060472 0.142357614761094 0.145718572161906 0.137800832227253 0.133452100806708 0.141469168377170 0.138119829449951 0.135837330869165 0.151106000597618 0.147640011973546 0.140172450030030 1 1|0 -|/ 30114342 30115773 30114922.5 30114040 30116173 - gene protein_coding_gene FALSE TRUE AT1G80040.1|AT1G80040.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G32440.1); similar to Ubiquitin system component Cue; UBA-like [Medicago truncatula] (GB:ABE77893.1); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.145317152597182 1.71751839479323 0.122417381553080 1 2.08469020590991 16.6575452393796 0.145317152597182 0.0736091354125003
AT3G25120_at 6.74017505636119 6.60511707431103 6.59069498001157 6.42195764493615 6.29985822875557 6.14395584893492 6.85995332491916 6.36516747424436 4.34326135172847 5.0521341868462 5.49505612718399 5.87570597785921 5.5511782852833 4.7666974374551 5.86477763409013 5.16489212296862 5.7514187769141 4.42771627548834 4.87381749311318 0.169883417696537 0.169671268901665 0.170278130092130 0.17469458168551 0.168588850775840 0.173180964527026 0.169818387659088 0.180120750638572 0.178742703610775 0.183405797063980 0.174799127651869 0.168588850775840 0.182588044487497 0.181887536794783 0.17073378393305 0.168821086397652 0.169712160142230 0.194227594483305 0.179175556689015 3 3|0 -|/ 9149809 9151019 9150421.1 9149551 9151130 - gene protein_coding_gene FALSE TRUE AT3G25120.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein similar to Os04g0376100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052579.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) 0.163644714480009 1.71709386361581 0.122497317377867 1 2.08413591721237 11.5626522908349 0.163644714480009 0.097254802172214
AT3G62190_at 7.93842353554633 8.16640716417256 8.21765436902834 8.116835593427 8.76323804854397 7.97381893696759 8.41302093636458 7.8813728983842 8.15462809891585 8.08746094847922 7.86410172811586 7.45219419345255 7.53308487694224 7.70719116306671 7.164506218295 8.04229489108838 7.54039388585238 7.4778280040705 8.45198890169607 0.214410157423117 0.210250775439128 0.223711661068728 0.217932604765053 0.208592247227040 0.226641735940065 0.208592247227040 0.217917922411415 0.224941193138195 0.211864780288394 0.215823331691934 0.209479657633474 0.208725977654967 0.218449726674757 0.232351236842283 0.208592247227040 0.229726439451445 0.220650244420290 0.208592247227040 3 3|0 +|/ 23032134 23033546 23032971.444 23032096 23034307 + gene protein_coding_gene FALSE TRUE AT3G62190.1 DNAJ heat shock N-terminal domain-containing protein similar to Os07g0637100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060399.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79526.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.232789671439227 -1.71690975078288 0.122531999359501 1 2.08389554912559 16.0983757785414 -0.232789671439227 0.170260913442171
AT3G54850_at 6.56604906494257 7.00282509471652 6.816845291134 6.74598828777764 7.18702016854743 7.07869887684845 5.95127800541152 6.24621820877079 5.37408746086164 5.21279795314381 4.9757609087925 5.13313083768166 4.8999348011272 4.98881652973852 4.71883301467865 5.20573679419209 5.56547604125496 5.01368157166733 5.18308009912185 0.25930754803006 0.256126673619558 0.257657440857345 0.256214255260860 0.258814986257398 0.254796460368677 0.256510765713329 0.250419608884058 0.272289674491120 0.266714709028702 0.258022032651622 0.255244324532125 0.259713516054581 0.257453423711165 0.260702580959516 0.250419608884058 0.257221561493778 0.254400539740916 0.261651709135886 3 3 + 20334257 20334701 20334461.455 20332400 20334998 + gene protein_coding_gene FALSE TRUE AT3G54850.1 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein Identical to E3 ubiquitin ligase PUB14 (EC 6.3.2.-) (Prototypical U-box domain protein 14) (PUB14) [Arabidopsis Thaliana] (GB:Q8VZ40;GB:Q9SV34); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT3G46510.1); similar to Os06g0102700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056535.1); similar to putative cell death-related protein SPL11 [Oryza sativa (japonica cultivar-group)] (GB:BAD67947.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.160780851982855 1.71600463367915 0.122702631564492 1 2.08271403972547 11.8590286164856 0.160780851982855 0.0939158015855166
AT2G46500_at 8.02736491862763 8.16581883276767 8.50901835363895 8.56452368386653 8.59811282460289 8.21964647216491 8.28528789951396 8.1752486843934 8.17678697071216 7.97918435342287 8.2357792210903 7.90718890689194 7.9736353403609 8.15343404234347 7.61769870261128 8.41758668266195 8.25045708345075 7.643017128039 7.97854539552741 0.163746131404838 0.162752476099792 0.164591996387197 0.165324686483337 0.16283112967155 0.171794675034672 0.169254364114167 0.170859598945762 0.178423678576487 0.166577328631157 0.161206465663164 0.167598674705128 0.167157157302183 0.161206465663164 0.171308388690878 0.164004289107297 0.166687530793156 0.167526534527597 0.166384330099782 2 2 - 19093825 19094428 19094113.727 19093633 19096053 - gene protein_coding_gene FALSE TRUE AT2G46500.1|AT2G46500.2 phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein similar to phosphatidylinositol 3- and 4-kinase family protein / ubiquitin family protein [Arabidopsis thaliana] (TAIR:AT5G24240.1); similar to Phosphatidylinositol 3- and 4-kinase, catalytic; Ubiquitin [Medicago truncatula] (GB:ABE80823.1); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.144702990809853 1.71595864813147 0.122711306599546 1 2.08265401902610 16.3529719811897 0.144702990809853 0.07292888540581
AT2G21970_at 10.3988532288534 10.4397723335552 10.7466964869002 10.9611974561591 10.4774686877202 10.2739396515178 11.2637181733952 11.3526134501805 10.3753645892640 10.7451350891815 10.3297337019104 10.1339790780446 10.6630681168663 10.7272348693085 9.8697324238542 11.1661456058589 10.9566516314627 10.6035756445413 10.5963385061868 0.0930974467764192 0.0920058646557317 0.0932193599014263 0.0936374945045188 0.0914933106621757 0.0968892403113258 0.0949479972166206 0.0993112910835434 0.096923039189815 0.0907882707330007 0.0907882707330007 0.091540203676692 0.0907882707330007 0.0928339488601521 0.0954062573942122 0.0907882707330007 0.0951320730238906 0.0943851117843692 0.0923218565615179 2 2|0 -|/ 9364290 9364921 9364610.3 9364063 9364996 - gene protein_coding_gene FALSE TRUE AT2G21970.1 SEP2 (STRESS ENHANCED PROTEIN 2) stress enhanced protein 2 (SEP2) chlorophyll a/b-binding protein similar to OSJNBb0003B01.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE03617.3); similar to OSIGBa0138H21-OSIGBa0138E01.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67810.1) -0.132463993409183 -1.71556299724532 0.122785968384961 1 2.08213764150047 21.3035546979644 -0.132463993409183 0.0539007574298455
AT2G17670_at 5.43284173657529 5.49269822074486 5.55014125246614 5.84150979030924 5.43829798659901 5.21761342619068 6.05424492597232 5.92221770847819 4.83627817820772 4.79379043450735 4.38709251768044 4.59982348848922 5.26278363194816 4.60566754315833 4.93400153069958 4.91087401101051 4.45582096209198 5.25392496676648 4.98055660413988 0.211753036582806 0.214064338187294 0.212088500946721 0.214481868980203 0.216182296594313 0.213454305074022 0.223045792111578 0.218483234310441 0.224797032578187 0.210814289095868 0.223914676679758 0.217288567633525 0.211756409355561 0.222603050645799 0.216362933952451 0.213296000837815 0.216584831345803 0.214306284037261 0.210814289095868 2 2 + 7682342 7682828 7682599.273 7681433 7683239 + gene protein_coding_gene FALSE TRUE AT2G17670.1|AT2G17670.2 pentatricopeptide (PPR) repeat-containing protein similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE86977.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE86977.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.141284929094561 -1.71543073843699 0.122810935812781 1 2.08196503764197 10.4544241244664 -0.141284929094561 0.0680462039795481
AT2G27100_at 5.9235609334233 6.05603938640597 6.46673401905479 6.00872751857090 6.10644331720957 6.42140913500702 5.79301745178343 5.93555005622594 5.60982081881741 5.17476840611651 5.08034181495316 5.34230181704102 5.57104158468639 5.31382765751491 5.10950075053108 5.15938527027958 5.64468384480336 5.36300190189878 5.1513029826758 0.224530291476706 0.229313029301332 0.228326981433378 0.230487332330039 0.2294778207834 0.238585358000683 0.227046125056174 0.224530291476706 0.230337620493817 0.230976037838792 0.227940601974597 0.225959668468737 0.226558398285004 0.233250411293435 0.229098559408404 0.226754790132004 0.237060482339265 0.227145249290978 0.227366733099611 2 2|0 +|/ 11582441 11583371 11582954.444 11579628 11583736 + gene protein_coding_gene FALSE TRUE AT2G27100.1 SE (SERRATE); transcription factor Identified as a leaf form mutant by Redei having serrated leaves. Further analysis of the single loss of function allele indicated pleiotropic effects extending to many aspects of shoot development such as taller meristems, alterations in phase transition, phyllotaxy and branching. Encodes a single zinc finger containing protein that is expressed in meristems and organ primordia. similar to CP29 (chloroplast 29 kDa ribonucleoprotein), RNA binding [Arabidopsis thaliana] (TAIR:AT3G53460.1); similar to putative C2H2 zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54671.1); similar to Os08g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062242.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.167416525755600 1.71540523712060 0.122815750415948 1 2.08193175791636 11.4064225519185 0.167416525755600 0.101917224174663
AT2G42270_at 4.85944701740239 5.22084655174281 6.42223689291204 6.25956855660684 5.89506382635492 5.72662323409495 6.10464685739795 5.93843977607318 5.5130860703251 6.31924587585635 5.87228571847434 5.71609305242192 5.88361006475049 5.79166074776283 5.17193422183712 6.73203977240002 6.05948854187399 6.03624316296864 6.62864500456295 0.222149192008195 0.219004420984355 0.231929033006276 0.213510076484140 0.212567460561398 0.223411923717576 0.213006302085140 0.210888890614463 0.235697921052807 0.223978414782245 0.208911274995217 0.213542154541964 0.210774983176469 0.216503714643684 0.228764799390523 0.214240254287337 0.226128326900280 0.212185793931985 0.216532424386185 2 2 + 17617485 17617894 17617719.909 17611408 17618411 + gene protein_coding_gene FALSE TRUE AT2G42270.1 U5 small nuclear ribonucleoprotein helicase, putative similar to EMB1507 (EMBRYO DEFECTIVE 1507), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G20960.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G61140.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 8 [Bos taurus] (GB:XP_880052.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Danio rerio] (GB:XP_685958.1); similar to putative Sec63 domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAP13001.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Sec63; (InterPro:IPR004179) 0.149644251783905 1.71461147610627 0.122965698378647 1 2.08089599251073 11.8341482860194 0.149644251783905 0.0798807352809116
AT3G23900_at 7.42184022267331 7.32618874352088 7.14904807585243 7.10845094615865 7.21577523821127 7.38905956283548 7.363198420007 6.69153204850174 6.13983914779198 6.5572788891717 6.64093788061956 6.94121675480273 6.39955838097351 6.95094647250293 6.79571427974965 6.95006683835334 7.14007815813171 6.30955688373095 6.53920393525072 0.183949323736998 0.182857343139558 0.179906314771912 0.187608255146502 0.182128229260199 0.191205276160828 0.180828915246201 0.185581612820473 0.210240339657628 0.199569000324604 0.191838340892014 0.185573904420031 0.18213336254969 0.179906314771912 0.183636542430270 0.184310232165768 0.193585412448500 0.193412442384067 0.200806963947637 3 3 - 8632594 8633052 8632904.9 8631613 8636052 - gene protein_coding_gene FALSE TRUE AT3G23900.1|AT3G23900.2 RNA recognition motif (RRM)-containing protein|nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to P0402A09.11 [Oryza sativa (japonica cultivar-group)] (GB:BAB62628.1); similar to Os01g0101600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041743.1); contains InterPro domain Filamin/ABP280 repeat; (InterPro:IPR001298); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.184397864562653 1.71248225395713 0.123368762294222 1 2.07811864641484 13.7971950473099 0.184397864562653 0.121380361600722
AT2G01820_at 9.19372642063614 9.40508104350934 8.85301785735754 9.14700568341438 9.1092696133417 9.34138871222291 9.15337665255272 9.53785661107096 9.5807330055918 9.27635806361017 9.23915182335633 9.32560501053992 9.31030503835404 9.23788914636536 9.21334326019848 9.10931330701350 9.06072677777143 9.39255439683888 9.2133560592944 0.0904678262207348 0.090574524949011 0.101847643045695 0.0956512885003668 0.0921006138429061 0.0918713017763913 0.0909006801607989 0.0929484255629866 0.0986690848583726 0.0902393553724326 0.0950680942507407 0.0923307757443831 0.0910947707138503 0.0936046680308908 0.093990500790146 0.0943133321919285 0.102977013746502 0.0974808700263864 0.095180939138364 2 2|0 -|/ 357668 358408 357932.6 357430 360680 - gene protein_coding_gene FALSE TRUE AT2G01820.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G23750.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G24650.1); similar to TMK1 (TRANSMEMBRANE KINASE 1) [Arabidopsis thaliana] (TAIR:AT1G66150.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to LRR receptor-like protein kinase [Nicotiana tabacum] (GB:AAF66615.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE85728.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.165272164901099 -1.71151386684157 0.123552482681006 1 2.07685598964312 18.5140537265400 -0.165272164901099 0.0998337541298068
AT1G10380_at 4.40894414565016 4.76300489318605 3.54653237312529 4.16460211250299 4.28963436742275 4.50829304953076 5.70142687658874 6.13571189854365 5.29523523080071 4.02378330446037 4.52586953899999 5.72444764470414 5.09241444218859 5.59944552147 5.47834969708289 6.05331987619922 5.12771724023854 5.0499527093167 4.565068101453 0.219194768364648 0.219749506020510 0.238043306120977 0.222790434245599 0.217706661466276 0.222726231456334 0.228768408836778 0.220207928010705 0.235467319451346 0.227715184082543 0.226550070919226 0.225024283614777 0.225048497386521 0.231326497437053 0.222318334056669 0.220216034025511 0.222896527582846 0.218217085618907 0.220934407223665 1 1 + 3401054 3401822 3401492.727 3400607 3402325 + gene protein_coding_gene FALSE TRUE AT1G10380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17350.1); similar to Os05g0409100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055526.1); similar to Os06g0364500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057608.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44115.1) -0.210797886488191 -1.71056996597414 0.123731800893729 1 2.07562556271975 9.66950294590865 -0.210797886488191 0.149247414351646
AT1G20850_at 4.76268555880715 4.81260026498168 4.09755382952497 4.54335368343493 5.01537737565014 4.78415108475992 6.12117134088334 5.497455084032 7.52154923942172 5.90435436119284 6.88482288821121 7.40845219604557 6.76202264098349 7.23167417403415 7.8517609692123 7.04628381643367 6.52613748225396 8.10817297981514 7.39498217256321 0.226926274852073 0.234062001760199 0.245188998904355 0.235086948217880 0.228264905327469 0.232802928400231 0.232143141876468 0.234182758886848 0.232900836014268 0.226761077769954 0.233024643907629 0.227800083517226 0.226761077769954 0.228379681553394 0.240956629502282 0.226809434238531 0.245250724785223 0.231156588680567 0.233718906266367 1 1|0 +|/ 7252769 7253488 7253122.333 7252163 7253718 + gene protein_coding_gene FALSE TRUE AT1G20850.1 XCP2 (XYLEM CYSTEINE PEPTIDASE 2); cysteine-type peptidase/ peptidase Identical to Xylem cysteine proteinase 2 precursor (EC 3.4.22.-) (AtXCP2) (XCP2) [Arabidopsis Thaliana] (GB:Q9LM66;GB:Q9SYQ2); similar to XCP1 (XYLEM CYSTEINE PEPTIDASE 1), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT4G35350.1); similar to Peptidase C1A, papain [Medicago truncatula] (GB:ABE82593.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) -0.200624216592895 -1.71036474011130 0.123770820631611 1 2.075358079075 12.0381491033091 -0.200624216592895 0.138845128560834
AT1G50570_at 8.57766569963858 8.82270577148262 8.79591641847244 8.89764612923408 9.10574631107596 9.27729546928697 8.10825550681668 8.44936611758902 7.89183214773452 7.65524534738741 7.57693402446627 7.55126827138802 7.69724918926792 7.50489930453897 7.099272557959 7.69377655655173 7.93636238708347 7.66940151448025 7.91737510687855 0.191250247048351 0.187490457055661 0.197056965196696 0.188535733684437 0.199165682789709 0.192072525108908 0.191954007937601 0.186633018881027 0.198977796392505 0.193111682398209 0.184749804071462 0.183973617619793 0.187416808692708 0.184979686000274 0.189199169256940 0.186871508798131 0.197119860523197 0.188515031957338 0.195246383050877 1 1 - 18730099 18730585 18730333.455 18729906 18731957 - gene protein_coding_gene FALSE TRUE AT1G50570.1|AT1G50570.2 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55530.2); similar to C2 [Medicago truncatula] (GB:ABE81465.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.149657041592882 1.70978469675367 0.123881166171133 1 2.07460214900988 16.4606395161414 0.149657041592882 0.0804618833355293
AT1G71080_at 7.60513732145373 7.78844956740186 7.46280112818525 7.8088113006134 8.19772759256172 7.95043510975937 7.28518389682765 7.49917839962316 7.08078342970806 7.5042619932455 7.2701401399799 7.0051006358024 7.31058117060808 7.58487415849426 7.14580956506723 7.36869198352378 7.25490568282838 7.34903555164822 7.27170571743174 0.169587906940086 0.174218877913787 0.173329668789698 0.173124043274812 0.173799379159898 0.169167070509924 0.180080664687415 0.1721037270187 0.178780878626488 0.173190670779222 0.179608090941736 0.173632333062151 0.172109570669234 0.179568391272637 0.172508448571294 0.173996598916895 0.180691743443204 0.180895093573023 0.174379260798066 1 1|0 -|/ 26813708 26814804 26814254 26813503 26815504 - gene protein_coding_gene FALSE TRUE AT1G71080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38050.1); similar to hypothetical protein DDBDRAFT_0192009 [Dictyostelium discoideum AX4] (GB:XP_629009.1); similar to Os01g0507500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043153.1); contains domain FAMILY NOT NAMED (PTHR15970); contains domain gb def: Hypothetical protein F23N20.7 (At1g71080/F23N20_7) (PTHR15970:SF2) 0.155507566992802 1.70791121793527 0.124238191746389 1 2.07216134827258 14.9855785767812 0.155507566992802 0.0882873333372906
AT3G19990_at 6.48409762271252 6.75316406996779 6.85008583518083 6.8730013620959 6.71209958875662 6.57314235961678 7.14478894803424 6.59806252004435 6.54152705458912 7.20509369568371 6.40880608510315 6.6169671038526 6.2661437929837 6.63814234737352 6.33308005086249 6.33126638806217 6.82705952157479 6.65749945949279 6.83628655642264 0.190397483829213 0.187588067925741 0.194017713792493 0.193461862394244 0.193129185301212 0.197424571000176 0.193618679253277 0.191607230303616 0.197414219394974 0.192101016540927 0.196170810892446 0.194919051294133 0.199126549075153 0.192160945337085 0.191738449745518 0.191250727659047 0.208368467059435 0.190141016486168 0.193200208516890 3 3 + 6966379 6967080 6966753.364 6965653 6967254 + gene protein_coding_gene FALSE TRUE AT3G19990.1 binding similar to hypothetical protein BB0394 [Bordetella bronchiseptica RB50] (GB:NP_886943.1); similar to Os02g0828500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048601.1); similar to Os02g0828200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048598.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.172022256172933 -1.70689313557100 0.124432604236384 1 2.07083546915144 13.4339751362486 -0.172022256172933 0.108230546865913
AT2G39960_at 9.58476881422608 9.66493390062654 9.71601588156434 9.81780725480156 9.70694282537296 9.33200646667114 9.45894507702921 9.52096575141114 8.82876376838697 9.15887656898309 9.28215541189213 9.36086702583749 8.87788319868957 9.16683475259955 9.48187099008033 9.22339727699697 9.07612154778595 9.17479434918453 9.03698498426286 0.152381035726763 0.14357147475193 0.14357147475193 0.150451654640657 0.151426144964722 0.154372467308773 0.150114581774106 0.146142284243303 0.162594218187669 0.150318554174747 0.14357147475193 0.149447690503575 0.144690242210954 0.151963328705471 0.147256300952472 0.149860600645156 0.165298883287441 0.144868194826968 0.151873726569125 2 2|0 -|/ 16688942 16690498 16689845.4 16688552 16690718 - gene protein_coding_gene FALSE TRUE AT2G39960.1 microsomal signal peptidase 25 kDa subunit, putative (SPC25) Identical to Probable signal peptidase complex subunit 2 (EC 3.4.-.-) (Microsomal signal peptidase 25 kDa subunit) (SPase 25 kDa subunit) [Arabidopsis Thaliana] (GB:P58684); similar to signal peptidase [Arabidopsis thaliana] (TAIR:AT4G04200.1); similar to Os02g0565200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047165.1); similar to Os04g0446300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052909.1); similar to hypothetical protein DDBDRAFT_0201716 [Dictyostelium discoideum AX4] (GB:XP_645946.1); contains InterPro domain Microsomal signal peptidase 25 kDa subunit; (InterPro:IPR009582) 0.141535924934132 1.70667671033712 0.124473968882051 1 2.07055365720206 18.7071477513017 0.141535924934132 0.0694834973945882
AT4G29070_at 9.26215921694733 9.61237468457621 9.77855125210645 9.95623666980455 10.1150654753308 9.96465325277548 10.5546828153376 10.3788390731626 9.26138142075 9.78968683933578 10.0147778558029 9.52430197914443 9.6900398814201 9.74959864967383 9.46747315436454 9.99654683258334 9.92257496316542 9.83240474490155 9.38872023871407 0.122614448092970 0.117806173633892 0.122338043630376 0.118442358501997 0.118205780645264 0.118463031422222 0.123936071054056 0.126390775915424 0.130693947135241 0.126664758060867 0.124958791689416 0.123568046889183 0.118988779995745 0.129695463952945 0.123794948388394 0.119966945883429 0.129828369506607 0.125603623023385 0.130713637218238 4 4 + 14322295 14322972 14322538.364 14321819 14323313 + gene protein_coding_gene FALSE TRUE AT4G29070.1|AT4G29070.2 similar to hypothetical protein [Platanus x acerifolia] (GB:CAL07987.1); contains domain Phospholipase A2, PLA2 (SSF48619); contains domain no description (G3D.1.20.90.10) 0.148198986515222 1.70654012241836 0.124500081018446 1 2.07037581128278 19.5801424336211 0.148198986515222 0.0788810113519173
AT3G18640_at 5.2865024551557 6.02266159610714 4.92558979468393 5.10907852369534 5.47198207742969 4.96494250912304 5.04453434137419 5.1418608239334 4.0224336618853 4.52639335296912 5.01233017857672 4.6863394828374 5.18707841662538 4.50242693029408 5.1471456088306 5.00285572678828 5.17135147914126 4.28063812474118 3.98583060598786 0.210299698362412 0.215817719613361 0.208654994023107 0.213768549919056 0.210671728517797 0.240055721843708 0.210088132309687 0.221497482601487 0.207865050718754 0.216058733488897 0.205766851388467 0.209877730529086 0.230998126147998 0.210811609035413 0.203070788903813 0.207019800956109 0.231299996697541 0.207053693865456 0.220076817734879 3 3|0 -|/ 6414118 6414284 6414202.667 6413307 6416556 - gene protein_coding_gene FALSE TRUE AT3G18640.1 zinc finger protein-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26850.2); similar to hypothetical protein S250_18C08.12 [Sorghum bicolor] (GB:AAS82598.1); similar to Os03g0214900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049373.1); similar to Os08g0135800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060944.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.219779979311163 1.70637293578688 0.124532049735289 1 2.07015813252892 9.7718889904012 0.219779979311163 0.158811008363553
AT4G23670_at 11.4520904057609 11.6502436348520 11.152775328191 11.1414909565797 11.1433686233436 11.0963047466964 12.6926564351202 12.5494786104423 11.8476576669373 12.4916007587167 12.9890289224033 13.1987368383284 13.0115885239198 12.8920967578912 13.0710178325004 12.9181443378208 12.7472229912383 13.2101641293049 12.5737663766080 0.0725579810108617 0.0733604964419726 0.0755144708765264 0.0748952637239016 0.0721721655993127 0.0747574384998163 0.0767367264830533 0.07723314538979 0.0741033021128489 0.0730837546942366 0.0716846530539021 0.0716846530539021 0.0717011981441779 0.0756484654623968 0.0736755713436455 0.0716846530539021 0.074916552429377 0.0725559877945518 0.0716846530539021 4 4|0 -|/ 12332856 12333624 12333194.1 12332570 12333814 - gene protein_coding_gene FALSE TRUE AT4G23670.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT4G23680.1); similar to major latex protein [Ficus awkeotsang] (GB:AAQ07269.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) -0.126111958459647 -1.70607775295787 0.124588511846889 1 2.06977382444879 24.2643469138382 -0.126111958459647 0.0431274086849744
AT4G36550_at 6.9276684934251 7.85771470822106 7.3048332919321 7.95878272166439 7.8294488617106 7.4220759895241 6.98134780568268 7.1613935736785 6.75272682449829 6.77533336258744 7.38454109007181 7.49993330590874 7.2542167732099 6.8639553209677 5.93073937584185 7.37099192700256 6.72205669426342 6.58429258714105 6.87212173632802 0.259491287530495 0.261619302430379 0.272326256533826 0.262373121556905 0.268169136819424 0.265453144477652 0.286962116031123 0.256834136057771 0.27602821588782 0.261653917382459 0.256480337482126 0.255157987672274 0.25953386861584 0.271322084843030 0.272850975742253 0.254003190851477 0.288250845670714 0.262970852415737 0.271397471274118 4 4 - 17245456 17245915 17245698.909 17245403 17247585 - gene protein_coding_gene FALSE TRUE AT4G36550.1 U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to bg55 [Bruguiera gymnorrhiza] (GB:BAB55653.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.274017157059464 1.70452800249971 0.124885333677264 1 2.0677566379254 14.3061089434492 0.274017157059464 0.211311362941256
AT4G19170_at 12.315859987989 12.5836831756516 13.0930781641852 13.1671161613823 13.1299191461791 12.9872932029934 13.0482728023567 13.1343465956990 12.6642030868221 12.9916684129794 12.7488012272522 12.3347949270627 13.1369939026184 12.8843992635521 11.8136074383364 13.1663328945602 13.2384473133334 12.7143722307594 12.7826855227733 0.0795411341431249 0.0795411341431249 0.0831703472364103 0.0804747250608736 0.0801124482849994 0.0828689800747282 0.080858527878615 0.0803035375291305 0.0916770080309953 0.0795411341431249 0.0811951252041948 0.0817627226062682 0.0808347335412106 0.0847597629919223 0.0843816977764447 0.0814813933057671 0.0841080502989944 0.0878297018519501 0.0795411341431249 4 4 + 10483088 10483531 10483297.909 10481797 10483868 + gene protein_coding_gene FALSE TRUE AT4G19170.1 NCED4 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 4) chloroplast-targeted member of a family of enzymes similar to nine-cis-epoxycarotenoid dioxygenase similar to NCED5 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 5) [Arabidopsis thaliana] (TAIR:AT1G30100.1); similar to carotenoid cleavage dioxygenase 4a [Citrus clementina] (GB:ABC26011.1); similar to Lactuca sativa carotenoid cleavage dioxygenase 1 (GB:BAE72094.1); similar to nine-cis-epoxycarotenoid dioxygenase4 [Pisum sativum] (GB:BAC10552.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) 0.132838668543520 1.70428500527565 0.124931933801440 1 2.06744042160813 25.7162316498258 0.132838668543520 0.0560659033284915
AT3G19420_at 9.98003392785485 9.92076264519287 10.1082310485059 9.99993084146614 10.2949651536223 10.3200819839069 9.88960641714328 9.76876929828615 9.8299912392964 9.82110300200282 9.8614825509787 9.67357516391474 9.77022811658527 9.84328600657549 9.62257444827293 9.81530871781573 9.77232430310861 9.86008426740426 9.83092962462601 0.076116730677404 0.0776531721318539 0.0739615278380406 0.0765486184276028 0.0746305778270184 0.0773592093540452 0.0746901552426692 0.0746315115967005 0.0766404123596188 0.0768205589934246 0.0736113232667824 0.0743880386877267 0.0755568100653996 0.0774369926290655 0.0768335494043524 0.076317021323744 0.074010393739548 0.0735604388136514 0.0756706578473643 3 0|3 /|+ 6734850 6735310 6735089.7 6731382 6735629 + gene protein_coding_gene FALSE TRUE AT3G19420.1 phosphoric monoester hydrolase similar to phosphatase-related [Arabidopsis thaliana] (TAIR:AT3G50110.1); similar to GA19047-PA [Drosophila pseudoobscura] (GB:EAL29329.1); similar to Os12g0407500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066634.1); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.120512921473133 1.70211488655337 0.125348814575058 1 2.06461729875078 19.8376472822342 0.120512921473133 0.0302100532073928
AT1G05205_at 7.15417728273836 7.1386519337055 7.12789550229989 6.88772520290566 6.32159327832116 6.61520612591135 6.13330936510216 6.57433815962145 5.70481393280507 5.87922224006544 5.93568338153245 6.6778332317749 5.83207409087748 5.90969217156853 6.92977584050434 6.19142059813422 5.66340760841442 6.37936382414082 5.96048281710812 0.218911997061721 0.226535044421500 0.229923602808894 0.230576657642541 0.222969991878261 0.218911997061721 0.218911997061721 0.219679132583653 0.240315330489569 0.226809760752772 0.225539443487614 0.218911997061721 0.225662358269468 0.225789520041557 0.227285491465249 0.221843696708173 0.237880792587841 0.222443205607948 0.219366667391028 1 1|0 -|/ 1509384 1510223 1509867.75 1509212 1510280 - gene protein_coding_gene FALSE TRUE AT1G05205.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45491.1) 0.164859594388247 1.69967511644756 0.125819027961152 1 2.06144529746418 12.7631517763397 0.164859594388247 0.100704984734534
AT3G47670_at 6.16821654523959 6.65052565028807 6.02691146064666 6.31563640521383 6.32010868251148 6.26688769675124 6.18043514953379 6.43948467424545 5.13722208407196 5.01424537089248 5.5322897540873 5.07311209428108 5.41126251559497 5.69369251546145 5.64649157137802 5.22907788806412 5.26410417401292 5.68943997821058 4.77027942810492 0.235146894517356 0.233526754623972 0.238103045108302 0.233526754623972 0.239743960020859 0.244390268582783 0.237961097441221 0.236718916432602 0.257772028161655 0.235832291485709 0.234103158468222 0.233526754623972 0.238500473921222 0.243692655653928 0.233526754623972 0.236831381312150 0.246560885283119 0.246955158652313 0.239324838444667 3 3 - 17586142 17586469 17586342.455 17585770 17586865 - gene protein_coding_gene FALSE TRUE AT3G47670.1 pectinesterase inhibitor similar to ATPME1 (Arabidopsis thaliana pectin methylesterase 1), pectinesterase [Arabidopsis thaliana] (TAIR:AT1G53840.1); similar to Pectinesterase-3 precursor (Pectin methylesterase 3) (PE 3) (GB:Q43111); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.170619370075297 1.69920895404591 0.125909055698917 1 2.0608394599599 11.5042005025918 0.170619370075297 0.107506272879918
AT1G04350_at 10.0653896360436 10.0788839570267 10.8142639490717 10.7640648784890 10.9920413119491 10.6877929095426 11.1025124642484 10.7750324493112 10.2858025459048 10.7830272200990 10.5824283764767 10.2716866844360 10.6193975966009 10.647963737381 10.2298472183853 10.9482216823770 10.8769585668064 10.3985141836694 10.6932912930843 0.0967173613211575 0.094827543867501 0.0942985004939494 0.0942536914742716 0.0931437218129677 0.0975172704555704 0.095118828161176 0.0953009402146639 0.0998422800944035 0.0934839894955913 0.093857117015229 0.0943614175589567 0.0918050761855055 0.0967630592291172 0.0954570653138221 0.0915477462858588 0.103745422071596 0.105860650061508 0.0918256672316135 1 0|1 /|+ 1166021 1166505 1166251.889 1165164 1166767 + gene protein_coding_gene FALSE TRUE AT1G04350.1 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT5G59530.1); similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT5G59540.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.146794852504747 1.69883475905185 0.125981365187756 1 2.06035319953272 21.2396231655250 0.146794852504747 0.0778769625934504
AT1G03600_at 12.1621690940342 12.1613959150768 11.5862154941449 11.6830617043674 11.8793260094279 11.8740642590279 12.3625775099362 12.6187403022367 12.7124722643704 12.4270993420042 13.0317372235584 13.0739924961292 12.7249045809512 12.8571834517361 13.2259233755801 12.7156391551376 12.3227068545002 12.7349509892653 12.4221785463361 0.0565184184640632 0.0578567882961606 0.0629517523012642 0.0618785363650479 0.0563409658661257 0.0625236694659847 0.0584097195791254 0.0600816401143337 0.0580532093840963 0.0589668207514221 0.0585791522067088 0.0566574183712383 0.060121880292492 0.058858547576382 0.0580470435179588 0.0561799739247247 0.0590694914704373 0.0569202269676871 0.057803506324225 1 1 + 898917 899338 899167.091 898875 899654 + gene protein_coding_gene FALSE TRUE AT1G03600.1 photosystem II family protein similar to photosystem II 11 kD protein [Thermosynechococcus elongatus BP-1] (GB:NP_683253.1); similar to Os03g0333400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050024.1) -0.127628728479292 -1.69819997827979 0.126104117897192 1 2.05952842149408 24.7191753610786 -0.127628728479292 0.0474014536079299
AT2G37110_at 9.60363441509865 9.60153435288136 9.7666394009779 9.51735243131416 9.5043673244022 9.35014736419856 8.92420320593706 8.85738681508786 9.00757260162082 8.62452270006823 8.74709081277134 8.77551265703748 8.48159429803194 8.88304567635789 8.84274249105124 8.52118629802744 8.47174537881361 8.8373309479782 8.53637540762518 0.150130960972794 0.146822736636804 0.148767511764515 0.153856747705273 0.147686431752209 0.147225861888491 0.143742762647170 0.147503532044847 0.153888061607359 0.156197919910598 0.144092691942182 0.144953570014119 0.145422491456938 0.153351949610829 0.140849797746364 0.152954316682895 0.166189424827910 0.153544614421111 0.158185363216994 2 2 + 15599915 15600749 15600367.182 15599631 15601072 + gene protein_coding_gene FALSE TRUE AT2G37110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40935.1); similar to Uncharacterized Cys-rich domain [Medicago truncatula] (GB:ABE78316.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.130072216604605 1.69807567594377 0.126128168158196 1 2.05936693015665 18.0995854836272 0.130072216604605 0.0520306710864399
AT3G46820_at 7.60293700513366 7.56109539813133 7.05727871157047 7.3204957087505 8.54735350975837 7.64184926987096 7.66134299064768 7.47812241076711 7.01522595378132 6.53427095565058 7.09327486025324 7.43761390350635 7.22771242595159 7.34419837389343 7.15935338832441 7.28616631131764 6.70466396255246 6.61069727974351 6.61411672638534 0.191889148901158 0.194606637034600 0.200107404330837 0.202402654718152 0.197361240740945 0.20324262004202 0.189809329689243 0.189183732743111 0.203758786129877 0.195738648163079 0.193928511649509 0.191293964798989 0.189183732743111 0.196772971362128 0.189400415923535 0.189183732743111 0.193573513586107 0.198056728264584 0.190154403970083 3 3 - 17253441 17253962 17253750.273 17252768 17255262 - gene protein_coding_gene FALSE TRUE AT3G46820.1 TOPP5 (Type one serine/threonine protein phosphatase 5); protein phosphatase type 1 Encodes the catalytic subunit of a Type 1 phosphoprotein Ser/Thr phosphatase, expressed in roots, shoots and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 5 (EC 3.1.3.16) (TOPP5) [Arabidopsis Thaliana] (GB:P48485); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to serine/threonine protein phosphatase 1; PP1 [Malus x domestica] (GB:AAD56010.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.226312683369023 1.69799113363835 0.126144527986547 1 2.05925709734898 14.5233916798114 0.226312683369023 0.166397401727268
AT4G28910_at 8.58587082498106 8.7645676875303 8.58308781450432 8.5739393089236 8.82700826856662 8.64652074431747 8.44444115508105 8.57699602140482 8.0766306329446 8.25863271955725 8.43306435903932 8.22095277829427 8.14999305162648 8.26867208136962 8.43319747147233 8.34859958846839 8.39312554227617 8.38319072635001 8.0729243514049 0.116527838067606 0.109873209263477 0.109487058458732 0.105692794161476 0.113241436721532 0.113363499252587 0.111436519953330 0.110506075843914 0.121745728998516 0.111016286450362 0.111982572695100 0.112257875636166 0.118700541264637 0.110647468373530 0.116206413461207 0.105692794161476 0.114783567454791 0.108813954823583 0.119690579624876 4 4 - 14264341 14264977 14264663.909 14264073 14266755 - gene protein_coding_gene FALSE TRUE AT4G28910.1|AT4G28910.2|AT4G28910.3 similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G07250.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84658.1); contains InterPro domain Protein of unknown function DUF1675; (InterPro:IPR012463) 0.128728496860927 1.69760736157022 0.126218816534933 1 2.05875855210867 16.8577599870791 0.128728496860927 0.0496044833901354
AT2G35110_at 6.45148487879411 6.88000201452905 6.53589423064676 6.64483746642747 6.33592884389529 6.5676991957329 6.25073029545387 6.49491354652616 6.76590318682836 6.71591212496586 6.24162262547025 6.05918348772402 6.35561080647373 6.47004971799088 6.31179723571058 6.86385084304395 6.15723668937697 6.72942701954931 6.68458717490366 0.178035059261596 0.164291450468536 0.176566603873919 0.164883784396517 0.173733338942531 0.180817852246559 0.171523594367374 0.167836485194819 0.173232244257080 0.169800691034076 0.170194277830808 0.170915573928800 0.170988823703590 0.1672799465817 0.167684553047737 0.165026309966559 0.185316275672083 0.175676914857793 0.177634027934466 2 2 - 14803059 14803678 14803318.727 14802794 14811009 - gene protein_coding_gene FALSE TRUE AT2G35110.1|AT2G35110.2 GRL/NAP1/NAPP; transcriptional activator|GRL/NAP1/NAPP Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Identical to Protein NAP1 (Nck-associated protein 1) (AtNAP1) (AtNAP125) (p125Nap1) (NAP of plants) (ARP2/3 regulatory protein subunit NAPP) (Protein GNARLED) (NAP1) [Arabidopsis Thaliana] (GB:Q5S2C4;GB:O82180;GB:Q66GU3;GB:Q6BDH4); similar to Os08g0544500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062406.1); similar to hypothetical protein MtrDRAFT_AC147481g14v1 [Medicago truncatula] (GB:ABC75364.1); contains domain SUBFAMILY NOT NAMED (PTHR12093:SF1); contains domain FAMILY NOT NAMED (PTHR12093) -0.16086480435768 -1.69726920224207 0.126284309041677 1 2.05831930261383 13.0805520417007 -0.16086480435768 0.096172086753275
AT4G10170_at 7.51756825843991 8.0284384951166 8.11421042889425 7.88086970551584 8.8819771141658 8.10724813398712 8.03084439906572 7.96972767336819 7.75792304498287 7.53027235412943 7.76697341250659 7.98013202581963 7.99834634193589 8.05894431733645 7.47455196108357 8.07172750057616 7.9531543916628 7.7618101328656 8.08593822316444 0.154535888594335 0.151894049818126 0.158035523977333 0.163384648246318 0.159161388571477 0.163401665146284 0.166304825825993 0.15464453161742 0.166034269820621 0.156545350019597 0.155190648874279 0.153964990838610 0.156479246409277 0.159228667866091 0.160468854250563 0.156038354957665 0.159725750317506 0.165446987105361 0.159692477913666 4 4 + 6344887 6345322 6345144.182 6344327 6345533 + gene protein_coding_gene FALSE TRUE AT4G10170.1|AT4G10170.2 synaptobrevin-related family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33475.1); similar to Os08g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060818.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB92457.1); similar to Os01g0876500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044970.1); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.225629387762123 1.69638542856591 0.126455620563152 1 2.05717151648572 15.9036519683520 0.225629387762123 0.165931949814367
AT4G12420_at 7.48026439543206 7.51735354080844 6.48124344043035 6.48854627633907 7.09238997528588 6.83306701240795 7.83409076593409 7.57261928105126 9.06306096347717 8.37931767851028 10.2193358670646 9.83945340708588 9.31645154118154 9.30455275063895 10.1196824789789 9.10622412342535 8.30953984331092 9.08240152985878 8.98501445498535 0.163281487557914 0.147624723363432 0.149403278624277 0.15972610104835 0.163054728242829 0.152728665780309 0.151465850444409 0.153342381648465 0.159292918239421 0.162767931974952 0.159430777050333 0.158547452457672 0.155677150739303 0.172812881783906 0.16334521987817 0.150942288482903 0.147008007097308 0.15330649162337 0.153502271874268 4 4|0 -|/ 7349981 7350755 7350369.2 7349659 7353071 - gene protein_coding_gene FALSE TRUE AT4G12420.1 SKU5 (skewed 5); copper ion binding encodes a protein of unknown function involved in directed root tip growth. It is a member of 19-member gene family and is distantly related structurally to the multiple-copper oxidases ascorbate oxidase and laccase, though it lacks the copper-binding domains. The protein is glycosylated and GPI-anchored. It is localized to the plasma membrane and the cell wall. The gene is expressed most strongly in expanding tissues. Identical to Putative monocopper oxidase precursor (Skewed roots) (SKU5) [Arabidopsis Thaliana] (GB:Q9SU40;GB:Q8H7C9); similar to SKS1 (SKU5 SIMILAR 1), copper ion binding [Arabidopsis thaliana] (TAIR:AT4G25240.1); similar to SKS2 (SKU5 SIMILAR 2), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G51480.1); similar to SKS3 (SKU5 Similar 3), copper ion binding [Arabidopsis thaliana] (TAIR:AT5G48450.1); similar to C-terminal peptide-binding protein 1 [Zea mays] (GB:BAE95064.1); similar to Os06g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056550.1); similar to putative pectinesterase [Oryza sativa (japonica cultivar-group)] (GB:BAC55686.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Multicopper oxidase, type 3; (InterPro:IPR011707); contains InterPro domain Multicopper oxidase, type 2; (InterPro:IPR011706); contains InterPro domain Multicopper oxidase, type 1; (InterPro:IPR001117) -0.137098079660901 -1.69621438067386 0.126488801381496 1 2.05694940185320 16.2731149484698 -0.137098079660901 0.0640640494710256
AT2G30980_at 8.95604336542341 8.71520071013007 8.6424997189812 8.43938988517819 8.94010692790247 8.7409859066618 8.62206738030283 8.20846532726493 8.84734677036013 8.32287415073164 8.97116427313854 9.04515913065427 8.5701459022973 8.79158179770483 9.09688816719914 8.67005492938133 8.14598322731738 8.89353775745902 8.37963191328868 0.122210334370712 0.117030094865746 0.129167428955561 0.117719676969810 0.117030094865746 0.122042801811550 0.117030094865746 0.117781878838028 0.132859304415028 0.117030094865746 0.120278258767765 0.117030094865746 0.122440211424402 0.121437787218233 0.122446188183334 0.118206563549678 0.147362427479426 0.117030094865746 0.123812301635662 2 2|0 -|/ 13189632 13190474 13190083.25 13189146 13193026 - gene protein_coding_gene FALSE TRUE AT2G30980.1 shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) Identical to Shaggy-related protein kinase dzeta (EC 2.7.11.1) (ASK-dzeta) (ASK6) [Arabidopsis Thaliana] (GB:Q39010;GB:O80862); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G06390.2); similar to BIN2 (BRASSINOSTEROID-INSENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT4G18710.1); similar to shaggy-like kinase etha (OSKetha) [Oryza sativa (japonica cultivar-group)] (GB:CAA73848.1); similar to putative shaggy-like kinase dzeta [Oryza sativa (japonica cultivar-group)] (GB:BAA92966.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80751.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.160874100292217 1.69583850677928 0.126561743679885 1 2.05646134520713 17.3029359075327 0.160874100292217 0.0963488160035971
AT3G02490_at 4.42841373290189 5.27326327554976 4.81883525668679 4.81612696437664 4.92728860930063 4.61429810085328 5.19968199348631 5.24724891117673 4.76308725424567 4.93055350292439 4.25984746460012 4.73125666408075 4.83892903249486 4.62902274054673 4.95613353688447 4.95521059313675 4.88547396545189 4.96022766735342 5.20223019073553 0.181924567422128 0.182369441078743 0.191437611004255 0.189721427677592 0.186849460348870 0.195270137458795 0.183309542147348 0.187372358315185 0.189667173475748 0.181785060020941 0.188243415673876 0.191077954123478 0.192036711542211 0.200454184100043 0.194070020417865 0.186181058574002 0.181257923748943 0.186480418495004 0.191792095459049 3 3 + 515081 515584 515378.364 513532 515932 + gene protein_coding_gene FALSE TRUE AT3G02490.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G15980.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96873.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.215646176687123 -1.69491774156681 0.126740591738516 1 2.0552659747402 9.78679611756008 -0.215646176687123 0.156133649829249
AT1G04810_at 7.13989318908177 7.41490098500726 7.89471556994024 7.75632977249478 7.5765928726529 7.47225778107439 7.33441968616796 7.09967101741844 7.28765402200967 7.2416444995702 7.14569936909802 7.54718446947402 7.10976135240184 6.76035714085917 7.25415256215333 6.99545515023934 7.19684154413193 6.83698200741768 7.22935783069963 0.204747356470657 0.204904387714111 0.204913903828575 0.202356722985800 0.205999322869339 0.209018584397046 0.200281893600788 0.204229318134286 0.215392097448070 0.205047056752353 0.205400137348172 0.201242817551548 0.209909172499953 0.212759946367358 0.206014303630328 0.204818217735579 0.211770858477506 0.212226126443013 0.205014152182501 1 1 + 1354556 1355209 1354987.455 1350179 1355441 + gene protein_coding_gene FALSE TRUE AT1G04810.1 26S proteasome regulatory subunit, putative similar to 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT2G32730.1); similar to Armadillo-like helical [Medicago truncatula] (GB:ABE85726.1); similar to B0402A04.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67136.1); similar to 26S proteasome subunit RPN2A [synthetic construct] (GB:AAP82172.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) 0.140335764166899 1.69297582687546 0.127118550177973 1 2.05274586703321 14.6404424343456 0.140335764166899 0.0693888059468644
AT1G36320_at 10.0370786156253 10.1157052675161 10.3893179078227 10.3363441939915 10.4687919596785 10.3523365274864 10.4442245184557 10.2993298813652 9.80495714474798 10.1493973276969 10.0977642154416 9.93393423924162 10.0693981267354 9.92310564580343 10.2130048191396 10.3483652170482 10.1051271989111 9.9555598777929 10.0434746907386 0.0740880357400737 0.0705473607872408 0.0742458128134675 0.0732673809503027 0.0721627110003362 0.0738076649624264 0.0705739366226592 0.0715727823954721 0.0827247750311501 0.07750795986337 0.0712814735751423 0.0705473607872408 0.0712087146786184 0.0758065478080435 0.0732280872508781 0.0705473607872408 0.0760463169410428 0.0780088064222571 0.0742778396910684 1 0|1 /|+ 13674335 13675090 13674662.556 13673026 13675310 + gene protein_coding_gene FALSE TRUE AT1G36320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37920.1); similar to Os01g0306800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042846.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84185.1) 0.122059553145316 1.69277298355612 0.12715808979314 1 2.05248270327849 20.3454205116137 0.122059553145316 0.0361119467235267
AT4G38930_at 7.79905270845996 7.94052489792673 8.17093742565051 8.24456752634729 7.62546720885678 8.28280131723992 7.76773237613663 8.08540152285987 7.5611634951556 7.35849093268439 6.93767136235654 7.14268724575866 6.76227088173282 6.83275645087864 6.90919213948572 6.99680519037461 6.89831839718296 6.7292851128224 7.46905851225903 0.160240533069697 0.162798888466676 0.159721846826121 0.159141223034341 0.157004660898712 0.158262069703390 0.162531470803408 0.163811329903926 0.161082240225721 0.162291622545443 0.159262984688691 0.159415806581944 0.160434452611733 0.166330286617039 0.157146540331181 0.15966502490001 0.163025652129348 0.159210765290942 0.161546259705240 4 4|0 +|/ 18150739 18151336 18151131.444 18149528 18151787 + gene protein_coding_gene FALSE TRUE AT4G38930.1|AT4G38930.2 ubiquitin fusion degradation UFD1 family protein similar to ubiquitin fusion degradation UFD1 family protein [Arabidopsis thaliana] (TAIR:AT2G21270.3); similar to ubiquitin fusion-degradation protein-like [Solanum tuberosum] (GB:ABB29959.1); contains InterPro domain Aspartate decarboxylase-like fold; (InterPro:IPR009010); contains InterPro domain Ubiquitin fusion degradation protein UFD1; (InterPro:IPR004854) -0.189507736307232 -1.69211356264579 0.127286706951450 1 2.05162728541282 15.1715744534049 -0.189507736307232 0.129321469127346
AT1G29700_at 9.68819424197493 9.88203166647979 10.0907704352071 9.76320021038168 10.5249927949901 10.0163904456909 11.0319881359404 10.8041964506829 10.4167956124478 10.5561477843015 10.3848537128458 10.2077547736405 10.2967609117015 10.4692918042729 9.92007611065482 10.5149139401512 10.4123797835030 10.4920952861700 10.3484602341540 0.0910711213259664 0.0777449589118901 0.0835384035968913 0.0800968994921138 0.0775009388443387 0.0822707083107252 0.0798342786222273 0.0785275976930802 0.0887958001192157 0.0782832085708213 0.0790272728036574 0.0775483229711818 0.078068486074763 0.0782735608013056 0.080600934791986 0.0777219861259961 0.0842482168377746 0.0766722105747883 0.0795737515286196 1 1|0 -|/ 10385185 10386167 10385736.75 10384967 10387427 - gene protein_coding_gene FALSE TRUE AT1G29700.1 similar to similar to Zn-dependent hydrolases of the beta-lactamase fold [Crocosphaera watsonii WH 8501] (GB:ZP_00516888.1); similar to Os12g0641300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067402.1); contains domain no description (G3D.3.60.15.10); contains domain Metallo-hydrolase/oxidoreductase (SSF56281) -0.177983119401163 -1.69133451870595 0.127438810467927 1 2.05061688280090 20.6140873813361 -0.177983119401163 0.116788257812367
AT1G62780_at 8.01781028133241 8.59835689248908 7.34167113447698 7.20168940737223 8.61851551276705 7.32094419502766 9.33632958392515 9.10044536531582 7.89551161012328 8.49679204767667 8.88572101384632 9.0611750563031 7.98594098439701 8.27868645658636 9.4224302760451 8.58363262135646 8.21874373291599 8.01580119019739 7.73330884085785 0.213660944129313 0.210926408189032 0.225924370411966 0.225814452768552 0.214678077335656 0.228170931552962 0.222047777263445 0.218017587007636 0.228874363712972 0.214119964385909 0.209048953222048 0.209048953222048 0.209729124825715 0.227572775670396 0.217377986283785 0.209048953222048 0.211852621211351 0.232186972981 0.210526801937739 1 1|0 -|/ 23253027 23254502 23253975.889 23252810 23254770 - gene protein_coding_gene FALSE TRUE AT1G62780.1 similar to B0616E02-H0507E05.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67829.1) -0.3139424423923 -1.69091367818307 0.127521046606665 1 2.05007114922851 16.4911639212592 -0.3139424423923 0.25053880645782
AT1G80400_at 6.96894199037446 7.22034844006443 7.35421302825242 7.38240915566222 7.83015531751331 7.47127619016557 7.92489408062783 7.74048685028736 6.62869808513443 6.30964666379642 7.05604201183608 7.05455904330313 6.57829002750074 6.89415866896143 6.61237508016484 6.81970067285492 6.20428557161528 6.25337047407283 6.35484837439818 0.248039493902642 0.248039493902642 0.260609389925702 0.250363764314914 0.252471785333478 0.261991660662703 0.248786921495289 0.248039493902642 0.267836323768118 0.259815333673097 0.248039493902642 0.248524862735516 0.252077333625157 0.249013310744994 0.25502005210404 0.248039493902642 0.268577251480276 0.268715600320889 0.255995466240515 1 0|1 /|+ 30231507 30232185 30231741.778 30230068 30232467 + gene protein_coding_gene FALSE TRUE AT1G80400.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G32600.1); similar to RING zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19217.1); similar to Os05g0179000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054802.1); similar to Os02g0787500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048342.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.149439450952754 1.69066654111736 0.127569362254577 1 2.04975069770044 14.0441716657343 0.149439450952754 0.0824148157243115
AT4G02120_at 7.46657255292138 7.25588499014514 7.44582442670182 7.295471410454 7.83470344155572 6.9466836330349 8.00425389138312 7.84338767783452 7.34143671017857 7.79956497353813 7.66132786789651 7.67773669230714 7.22016982647444 7.57640108193648 7.07218409465319 7.83379228627214 7.18057969118956 7.28083847442901 7.7152191678192 0.197544687759376 0.189273595993512 0.192622303322665 0.197344642731971 0.190545648358622 0.207388094208212 0.194835425759185 0.192844713321418 0.194141375634571 0.197990861558048 0.201284872964515 0.19634799881411 0.192742854480541 0.190303655313040 0.204386793524763 0.189051836658722 0.222597790160241 0.207259172863314 0.192557397945920 4 0|4 /|+ 943022 943923 943464.75 940778 944291 + gene protein_coding_gene FALSE TRUE AT4G02120.1 CTP synthase, putative / UTP--ammonia ligase, putative similar to CTP synthase, putative / UTP--ammonia ligase, putative [Arabidopsis thaliana] (TAIR:AT1G30820.1); similar to EMB2742 (EMBRYO DEFECTIVE 2742), CTP synthase [Arabidopsis thaliana] (TAIR:AT3G12670.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G20320.2); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99559.2); similar to CTP synthase [Medicago truncatula] (GB:ABE84419.1); similar to CTP synthase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99560.1); contains InterPro domain CTP synthase; (InterPro:IPR004468); contains InterPro domain Glutamine amidotransferase class-I; (InterPro:IPR000991); contains InterPro domain Glutamine amidotransferase, class I, active site; (InterPro:IPR012998) -0.221357791042462 -1.69031039576762 0.127639018829942 1 2.04928893717442 15.0399072708739 -0.221357791042462 0.162473576155219
AT1G75560_at 7.17569731685095 7.1487517859469 6.56058165052289 6.91559720314225 6.97952087834576 6.72066713393462 7.7511589571214 7.55398858298635 6.71770409812193 6.7883544378823 7.29749271741538 7.1230490517639 6.70000275379212 6.88180189651443 7.56153356941974 6.9077169391804 7.11983181234731 6.65019433249763 6.64467909742886 0.151633515546341 0.156152029572813 0.154136025672464 0.149280317447863 0.146522610508328 0.153882486007313 0.154630560938373 0.156524506671672 0.170065008021161 0.154697519557983 0.148513507238609 0.148233382363352 0.153944967571579 0.149810439177131 0.148069267480504 0.149704497938393 0.158406457137062 0.152328253240015 0.152711584736988 1 1|0 -|/ 28375275 28375734 28375475.2 28374802 28376902 - gene protein_coding_gene FALSE TRUE AT1G75560.1|AT1G75560.2 zinc knuckle (CCHC-type) family protein similar to CSDP1 (COLD SHOCK DOMAIN PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G36020.1); similar to Os10g0545300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065207.1); similar to putative zinc finger protein [Hyacinthus orientalis] (GB:AAQ89709.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.150008552300678 -1.68812592698408 0.128067034217180 1 2.04645762327053 13.9743031529034 -0.150008552300678 0.0834696879112385
AT3G08650_at 9.39191707294346 9.63354613879903 9.7766966823781 9.58561604423672 9.63319575704167 9.6693380900664 8.77062953769724 8.87965236712356 9.35359965022027 9.02712088709793 9.09252075237928 8.7679059049991 9.11075804019715 9.04345899813736 8.87166657094273 8.94548584705492 8.71720123267506 9.00237284225402 9.15097902299296 0.101052413072786 0.101394331071777 0.103027784172923 0.101545259422505 0.107866238428733 0.103206396964738 0.104517983741264 0.099535591311792 0.109463661821783 0.105718346315073 0.103668186439028 0.103003264399683 0.0996007100104765 0.108835937544757 0.105465917561973 0.102453802540765 0.112902275670432 0.108718109561600 0.102681398024098 3 3 - 2624704 2625269 2624986.909 2624467 2627456 - gene protein_coding_gene FALSE TRUE AT3G08650.1|AT3G08650.2 metal transporter family protein similar to metal transporter family protein [Arabidopsis thaliana] (TAIR:AT3G20870.1); similar to putative divalent heavy-metal cations transporter [Thermus thermophilus HB27] (GB:YP_005311.1); similar to Zinc transporter and related ZIP domain-containing proteins (ISS) [Ostreococcus tauri] (GB:CAL49985.1); similar to Os05g0316100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055173.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.131981725549737 1.68710968515856 0.128266602232338 1 2.04514102515768 18.4781511914609 0.131981725549737 0.0568949050580419
AT1G22160_at 8.73503091901285 8.58888874774948 8.88346964585128 9.00673031792614 9.20117741685491 9.27010155262164 8.93348139692946 9.01380677746603 8.33848141347566 8.93980340397249 8.27957063504027 8.20020345898587 9.43835480646163 8.9907997439355 7.86569834515546 9.59390953613097 9.43414952819581 8.64847388365964 9.22452053354388 0.104273078173609 0.108948502467021 0.106880947306856 0.101342550010165 0.107675414620833 0.104140004483229 0.107365629459578 0.101462378563909 0.117084708534154 0.0997891674837932 0.104749545981217 0.106692952607812 0.102881269888708 0.102515637674715 0.111943684993629 0.105695658287568 0.102781445120516 0.107525953658379 0.103008979886128 1 1 + 7823247 7823733 7823456.182 7823138 7823960 + gene protein_coding_gene FALSE TRUE AT1G22160.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G78020.1); similar to 80C09_23 [Brassica rapa subsp. pekinensis] (GB:AAZ41834.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.122347157444503 1.68705108331683 0.128278119096684 1 2.04506511413417 17.7744175680646 0.122347157444503 0.0378168714291899
AT2G05210_at 5.99656123309334 5.62739438425934 4.20774603657273 3.97252792122867 5.57907238656552 5.66195088340913 6.09043094071328 5.22550996017117 5.22770946509653 5.99690958706084 6.74879529268272 6.81532112176181 5.80352643110825 6.46051486442017 6.97661417300685 5.65429125630433 5.35914345679181 6.0286037405205 6.1886119917752 0.278717786606789 0.287805029358411 0.307151622069543 0.308940808333200 0.274164455356306 0.283927794476982 0.274164455356306 0.288722660870516 0.298572751519359 0.276082764667771 0.274164455356306 0.277176226874668 0.274164455356306 0.274164455356306 0.278518352694141 0.290091898259670 0.286672848373257 0.283492714445694 0.275331912595768 2 2 + 1893065 1893828 1893556.714 1890938 1894364 + gene protein_coding_gene FALSE TRUE AT2G05210.1 DNA binding similar to ATPOT1 (PROTECTION OF TELOMERES 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G06310.1); similar to Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE81442.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Telomere end binding protein; (InterPro:IPR011564) -0.226604439259122 -1.68534299525883 0.128614223510459 1 2.04285303418025 11.3127800382777 -0.226604439259122 0.168367947348874
AT4G25890_at 6.1461671980437 6.2581295501338 5.6736162439383 5.47925621264311 5.18331644687165 5.88731908543327 6.28689727405046 7.0624227730622 6.45755002281224 5.73096989555258 6.33848970439541 6.9934093599197 6.30162024354373 6.4374751799591 7.43778957915945 6.16006528669182 6.31421639432426 6.27917961283282 6.223962194524 0.205897386686736 0.204289161863568 0.208869136013723 0.205057092268697 0.214524012381809 0.211913351298112 0.212769616298442 0.211551153505242 0.212083140954030 0.217356646368688 0.204275496964226 0.211427483799477 0.213615477941671 0.211189433818577 0.209425708891219 0.211569343742269 0.213014397028844 0.204275496964226 0.213338380707106 4 4|0 -|/ 13159643 13160376 13160018.1 13159493 13160504 - gene protein_coding_gene FALSE TRUE AT4G25890.1 60S acidic ribosomal protein P3 (RPP3A) Identical to 60S acidic ribosomal protein P3-1 (RPP3A) [Arabidopsis Thaliana] (GB:Q9SVZ6); similar to 60S acidic ribosomal protein P3 (RPP3B) [Arabidopsis thaliana] (TAIR:AT5G57290.1); similar to Os06g0701400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058484.1); similar to 60S acidic ribosomal protein P3 (P1/P2-like) (P3A) (GB:O24413); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.243620284563639 -1.68345462339115 0.128986745710923 1 2.04040865862148 12.3322779518885 -0.243620284563639 0.185368196414062
AT3G58560_at 8.54751138501832 8.7050476680727 8.44866968252873 8.42643818819528 8.75436497091864 8.37508509093288 8.61700321290193 8.64305185590962 8.2687337404526 7.75796965538877 7.81630091446062 7.86686652843358 7.83311049159071 7.90878796627541 7.65643418595434 7.75540787142697 7.67964301664801 7.96620850416913 7.86775463725578 0.139671127631770 0.138928126482492 0.144993094189157 0.143934174338209 0.134898051769423 0.147583992420818 0.139765742255751 0.140278932340699 0.142493770561877 0.139903215692735 0.147371101184609 0.138544281358713 0.135747751707287 0.143312325041673 0.147050222332068 0.139823756094297 0.145699660229772 0.141116455352191 0.138256676215210 3 0|3 /|- 21661866 21662440 21662165.5 21661573 21665177 - gene protein_coding_gene FALSE TRUE AT3G58560.1 endonuclease/exonuclease/phosphatase family protein similar to hydrolase [Arabidopsis thaliana] (TAIR:AT3G58580.1); similar to Endonuclease/Exonuclease/phosphatase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94166.1); similar to Os10g0412100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064587.1); similar to Os03g0166800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049077.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) -0.140744228413813 -1.68214151725165 0.129246369036158 1 2.03870966147473 16.4522286464275 -0.140744228413813 0.0713194527780196
AT2G11890_at 6.26420022338398 6.5447886431293 6.65966212850238 6.52812337339125 6.46919542769462 6.08060490181594 6.76776874785218 6.98750317845942 6.73638861780072 6.21674515177375 5.80497586410419 6.4104601802328 6.25096241701917 6.41191028065385 6.00546447111011 6.548557849605 6.29634331853177 6.27194341687399 6.123304975763 0.217797584433917 0.229926106259964 0.228979764424421 0.222098489570272 0.228294589769406 0.239558419113520 0.221035901765687 0.219064805937650 0.234486293736024 0.220361373811904 0.222493844810232 0.228739746062923 0.222125297721613 0.236596685872859 0.223253578178070 0.221242215891968 0.225024540538089 0.217797584433917 0.224940242456299 2 2 + 4810187 4810673 4810443.455 4809865 4811457 + gene protein_coding_gene FALSE TRUE AT2G11890.1|AT2G11890.2 adenylate cyclase similar to Adenylate cyclase [Medicago truncatula] (GB:ABE93300.1); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172)|similar to Adenylate cyclase [Medicago truncatula] (GB:ABE93299.1); contains InterPro domain Adenylate cyclase; (InterPro:IPR008172) -0.157702215350653 -1.6820525918281 0.129263968461517 1 2.03859462476443 12.8421758979681 -0.157702215350653 0.094043407602299
AT1G80600_at 9.39488311491874 9.34856886850111 9.22559897586887 9.16949523886636 9.00039543935035 8.86441288280201 9.6015607998656 9.45751744694082 9.4629920753249 9.30681496822154 9.45652422607527 9.48232397911893 9.32193926654717 9.45727875756743 9.6182372352057 9.5630234963059 9.18482966777175 9.53154416032086 9.15740371863922 0.0932499900343397 0.0859735360117744 0.0932447019316222 0.0931457605456795 0.0904950833485 0.0942625001208358 0.0906128295114096 0.0889414040170576 0.0934261710223985 0.090659069112643 0.0862435935972494 0.0894907965405937 0.0914970470181184 0.08917225659991 0.0859735360117744 0.0859735360117744 0.093401061800263 0.0909817421044337 0.0896923394707151 1 0|1 /|- 30303671 30304061 30303847.9 30303391 30305445 - gene protein_coding_gene FALSE TRUE AT1G80600.1 acetylornithine aminotransferase, mitochondrial, putative / acetylornithine transaminase, putative / AOTA, putative / ACOAT, putative similar to delta-OAT (ornithine- delta-aminotransferase), ornithine-oxo-acid transaminase [Arabidopsis thaliana] (TAIR:AT5G46180.1); similar to Acetylornithine aminotransferase, mitochondrial precursor (ACOAT) (Acetylornithine transaminase) (AOTA) (GB:O04866); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814); contains InterPro domain Acetylornithine and succinylornithine aminotransferase; (InterPro:IPR004636) -0.121382289391213 -1.68110461204604 0.129451722227635 1 2.03736846054934 18.6383205222272 -0.121382289391213 0.0365192012937168
AT1G05840_at 7.76045896700754 8.39787506240155 8.11882182220355 7.8392662185688 8.91164002939915 8.16079411848833 8.30373442395765 8.12664421522461 8.08197719873618 7.71300150261319 7.33852247744098 7.2541667184532 7.39287787183587 7.7003435992471 6.83199205195654 7.56171540165685 7.1276394256283 7.41393362866528 7.9409925260466 0.202799704455966 0.202709093818332 0.207575178773486 0.206085203335112 0.206466017693989 0.200815755569326 0.203855253555440 0.200718872548357 0.220403553613238 0.201125685180734 0.200447056992658 0.203702189858467 0.206833860511247 0.197048416661133 0.209431666904517 0.198069140798683 0.223316683007539 0.204292101258957 0.197048416661133 1 1 - 1762875 1764052 1763493.455 1762733 1766280 - gene protein_coding_gene FALSE TRUE AT1G05840.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G02740.1); similar to Os02g0473200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046837.1); similar to Eukaryotic aspartyl protease [Medicago truncatula] (GB:ABE89788.1); similar to OSJNBa0008A08.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01597.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.236944566127176 -1.67648014480277 0.130371228493101 1 2.03139146818147 15.8222240101526 -0.236944566127176 0.179808803900887
AT1G80790_at 8.52899504439678 8.39785229389823 8.70641702266496 8.57924876172617 8.938002424389 8.60246766366824 8.91683870824042 8.6363994843293 8.57565854374483 8.81079278705781 8.31937022177784 8.46978205608369 8.23069348884509 8.33186285242567 8.18863280068427 8.59567701749855 8.40300507725746 8.45384816117299 8.8810809679282 0.135855181464804 0.122389716148531 0.121495004129895 0.117883785928389 0.116844951597216 0.123479536226152 0.121703867860105 0.119081560147860 0.132756619698862 0.127017910256200 0.120356605019764 0.117064184376749 0.133038853489249 0.121227531618112 0.122556514331145 0.116844951597216 0.119475874314625 0.123256369919582 0.125828312795081 1 1 + 30366858 30367724 30367446.091 30364615 30368199 + gene protein_coding_gene FALSE TRUE AT1G80790.1 XH/XS domain-containing protein / XS zinc finger domain-containing protein similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G00380.1); similar to XH/XS domain-containing protein / XS zinc finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G15910.1); similar to Protein of unknown function XH; Protein of unknown function XS; Protein of unknown function, XS and zinc finger; Prefoldin [Medicago truncatula] (GB:ABE87525.1); contains InterPro domain Region of unknown function XH; (InterPro:IPR005379); contains InterPro domain Region of unknown function XS; (InterPro:IPR005380); contains InterPro domain Region of unknown function, putative Zinc finger, XS and XH; (InterPro:IPR005381); contains InterPro domain DnaB-like helicase, C-terminal; (InterPro:IPR007694) -0.147611277356418 -1.67334802238959 0.130997408643403 1 2.02734757124594 17.2282542049367 -0.147611277356418 0.0820140215705141
AT3G02220_at 7.7015579420835 7.71355221179713 7.34467177779296 7.59627373706896 7.98954488110904 7.48552052193563 7.73433047078342 7.56184804581035 7.27651697326131 6.93746457303162 6.62276905515848 7.10005308060953 6.65644157286332 6.86731102763097 7.0885509950537 6.67722598556614 6.66850972260304 6.67040925663373 6.92552434805173 0.166880634994021 0.16913136441158 0.169108005672273 0.163873871528267 0.175399829049333 0.178547115361402 0.162647194245294 0.174046350378476 0.160600403477578 0.157273248968413 0.162300570174029 0.161086512083051 0.17278844498069 0.162354090524224 0.167451731215157 0.162262308469295 0.169338842605145 0.166380263225639 0.168223384022291 3 3|0 -|/ 412307 413341 412857.667 412076 413641 - gene protein_coding_gene FALSE TRUE AT3G02220.1 similar to hypothetical protein [Cleome spinosa] (GB:ABD96929.1); contains domain SUBFAMILY NOT NAMED (PTHR22876:SF1); contains domain FAMILY NOT NAMED (PTHR22876) -0.163206282954319 -1.67176681992358 0.131314573736168 1 2.02530739321198 14.5611178494458 -0.163206282954319 0.101975777413834
AT1G68740_at 5.88421289957774 5.74930702071547 5.75151114984002 5.74165514004775 4.73504808866086 4.64208283979661 5.87456941152557 6.09777831463214 3.60961396914704 5.12221798250824 4.43531279583437 4.54219522863707 5.07777948693214 4.64269941693931 3.94339468282849 4.32559563273483 5.04241500445272 4.55644613235171 3.68372903351885 0.261485545630999 0.258736262377593 0.255800530355114 0.256295853734947 0.248511990993958 0.267209805273306 0.268358626799815 0.252833791442413 0.268144487908727 0.246974541384315 0.246974541384315 0.264526225719099 0.252093808433920 0.250273110777814 0.265921096753397 0.25289330730722 0.259947808346474 0.276262844290363 0.246974541384315 1 1 - 25816422 25817260 25816896.455 25816112 25820320 - gene protein_coding_gene FALSE TRUE AT1G68740.1 EXS family protein / ERD1/XPR1/SYG1 family protein similar to PHO1 (PHOSPHATE 1) [Arabidopsis thaliana] (TAIR:AT3G23430.1); similar to putative PHO1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44936.1); similar to Os06g0493600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057682.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain EXS, C-terminal; (InterPro:IPR004342) -0.125841568914484 -1.67076542714098 0.131515802269423 1 2.02401578525791 9.91414567108962 -0.125841568914484 0.0479462894901456
AT2G38000_at 7.69905974707902 8.08235017790065 7.89934245191661 7.93341634834166 8.1462074098016 8.00798044653912 7.16236463506828 6.93638004811405 7.74956902854499 7.19545761063706 7.00944821036649 7.2943764557633 7.15959113877009 7.51824239607732 6.70948249382441 7.24492530408999 7.06420698950695 7.34526218844136 7.2605064528014 0.169894842951155 0.167971238173453 0.176825403689398 0.166812481500984 0.161747361224082 0.166729424073766 0.165058311601144 0.166344988762337 0.179885967332340 0.162092903943996 0.157140152804169 0.160145759556119 0.171574499345958 0.158673917105338 0.171975265048961 0.159505175803739 0.159564954279316 0.165241769572014 0.167835836320689 2 0|2 /|- 15910400 15910940 15910672.4 15910203 15912469 - gene protein_coding_gene FALSE TRUE AT2G38000.1 chaperone protein dnaJ-related similar to PREDICTED: similar to fls485 [Canis familiaris] (GB:XP_541787.2); similar to Os05g0316200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055174.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) 0.146522772609877 1.67076196572548 0.131516498326793 1 2.02401132130245 15.0184057886449 0.146522772609877 0.0808460404172818
AT1G54710_at 7.11564817608574 7.56037401494673 7.39745473574246 7.80350670032889 7.80573777916194 7.37226297684124 6.97549568489571 7.6874716542104 6.51039788773892 6.95800438192744 7.15715398984823 7.66162872115172 7.00023492055361 7.30986393688663 6.99201019630732 7.74397014288853 7.19410145531455 6.89278912718263 7.63879557638192 0.242739268604929 0.240213557858461 0.251959157404576 0.245762596436017 0.247750949110891 0.256444923767012 0.244750283272151 0.241744671670093 0.263495785920658 0.246430806658791 0.239516790562914 0.240988175992841 0.242404485352086 0.246471884911107 0.247969901562173 0.239516790562914 0.25518207854886 0.254363222843192 0.252234268443098 1 1 - 20420794 20421513 20421039.091 20420437 20424702 - gene protein_coding_gene FALSE TRUE AT1G54710.1 AtATG18h (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) h) similar to AtATG18g (Arabidopsis thaliana homolog of yeast autophagy 18 (ATG18) g) [Arabidopsis thaliana] (TAIR:AT1G03380.1); similar to Os05g0405900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85085.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.234114805700605 1.66969091552167 0.131732038667098 1 2.02263026440452 14.6045948035847 0.234114805700605 0.177957880158775
AT2G19600_at 4.53683832497951 4.67332046240936 4.45849159259035 4.53280741436014 4.20843769308883 4.23770831620528 4.91386631821992 4.70934464495111 4.99251635816674 4.72337844676039 4.80528457671741 5.70147663720168 5.00364659252031 4.76466053519919 5.23455785936733 5.34396129366056 4.81552610524217 4.66906891986676 5.10875387980183 0.213721085775540 0.20258765397521 0.218125252856836 0.206113713961639 0.201762485624729 0.222077102238057 0.213602774970865 0.206822448637457 0.214612470222960 0.207775260539462 0.207160854372137 0.207141063507464 0.202362126721544 0.205893585778785 0.203144294624994 0.201762485624729 0.214824864949175 0.202272208581245 0.206140121488274 2 2|0 +|/ 8489396 8490533 8489910.25 8486280 8490912 + gene protein_coding_gene FALSE TRUE AT2G19600.1 ATKEA4 (Arabidopsis thaliana K+ efflux antiporter 4); potassium:hydrogen antiporter member of Putative potassium proton antiporter family similar to KEA6 (K+ efflux antiporter 6), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G11800.1); similar to KEA5 (K+ efflux antiporter 5), potassium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT5G51710.1); similar to Os06g0561200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057872.1); similar to Putative potassium/proton antiporter-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19118.1); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.124128965091611 -1.66898191820585 0.131874896997606 1 2.02171627832873 9.52576303412468 -0.124128965091611 0.0447392661502908
AT2G21530_at 9.99920930635205 10.6367437166753 10.1358293944765 10.0122670684548 10.6263788710664 9.94667699072436 11.0588569998716 10.8036980128328 10.5886651350318 10.8716393063621 10.9254323230128 10.8569024126934 10.6470567625762 10.7596587690924 10.7552751914762 10.5833251173703 10.0136460477725 10.5522877464484 10.4638140916922 0.224524832925137 0.240170370756701 0.235991568517164 0.245633593653149 0.224524832925137 0.239941390822248 0.232552512605024 0.259650419086535 0.252023511506033 0.224524832925137 0.224524832925137 0.224524832925137 0.224524832925137 0.252557921183909 0.224524832925137 0.224524832925137 0.252296349257847 0.237768294682513 0.224524832925137 2 2 + 9226682 9227483 9227055.286 9226404 9227670 + gene protein_coding_gene FALSE TRUE AT2G21530.1 forkhead-associated domain-containing protein / FHA domain-containing protein similar to Os11g0127800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065631.1); similar to Os12g0124000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066037.1); similar to FHA domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95708.2); contains InterPro domain Forkhead-associated; (InterPro:IPR000253); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) -0.224506862904597 -1.66826279173725 0.132019941476776 1 2.02078941757116 21.0414929903904 -0.224506862904597 0.168567903811227
AT3G19760_at 10.2579573823673 10.3087061208505 10.5227806876815 10.4392765102160 10.6832796549369 10.4074684353779 10.6570568696170 10.5933383822823 10.0857119590002 10.1728477258641 10.4421765580753 10.3840449531683 10.3314842366080 10.1793798836520 10.2419793712284 10.1818992711539 10.2899459613231 10.2336161578229 10.0091697314077 0.0845241796882312 0.0805916412385944 0.0789688676471746 0.081892957459108 0.082765758582463 0.0783128245842382 0.0792924259347327 0.082298576386757 0.0843324879949779 0.0806359148249754 0.0784300348083159 0.0802472907273931 0.0794259000364576 0.0845165856284686 0.0808670636938085 0.0803487617078884 0.0818282124437798 0.0815877115878961 0.0838635851382742 3 3|0 +|/ 6865257 6866199 6865712.444 6863719 6866599 + gene protein_coding_gene FALSE TRUE AT3G19760.1 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 2 (EC 3.6.1.-) (RH2) [Arabidopsis Thaliana] (GB:Q94A52;GB:Q9ZS14); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G51380.1); similar to Eukaryotic initiation factor 4A-3 (ATP-dependent RNA helicase eIF4A-3) (eIF-4A-3) (GB:P41380); similar to translation initiation factor [Pisum sativum] (GB:CAA76677.1); similar to putative RH2 protein [Zea mays] (GB:ABC55720.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.127629646822717 1.66764080167720 0.132145512008914 1 2.0199879018765 20.6711374743593 0.127629646822717 0.0518240952698955
AT3G12780_at 12.3405697602200 12.4438465715848 12.0335722480565 12.2160493320210 12.0861803606307 11.9996886086003 12.6940340156593 12.9163267498341 13.0997266164471 13.2552289897477 13.4553568979460 13.5518922741127 13.0897433361547 13.2787984405266 13.5855645700473 13.5245693670185 12.9813946641172 13.4454012029522 12.9689031562523 0.0819123338350116 0.0821186939567599 0.0844002139996074 0.082763924375541 0.0822224880181221 0.0855368194072388 0.082161777162977 0.0822283283874144 0.0899689880259988 0.080924245298391 0.08338893072161 0.0813519366340288 0.080924245298391 0.0900839654425003 0.0857815082988173 0.080924245298391 0.0843524262594937 0.0871674900046504 0.080924245298391 3 3|0 -|/ 4061165 4061962 4061576.6 4060978 4063313 - gene protein_coding_gene FALSE TRUE AT3G12780.1 PGK1 (PHOSPHOGLYCERATE KINASE 1); phosphoglycerate kinase nuclear phosphoglycerate kinase (PGK1) similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576) -0.129342231851867 -1.66747651586017 0.132178697154862 1 2.01977622113724 25.5773049632884 -0.129342231851867 0.054959193927322
AT1G48420_at 9.7391051960844 9.93484313223412 10.1387685663784 10.0288050270530 10.1795560174365 9.93832247719154 10.1737850204446 10.0033224685761 9.81097301233628 10.0516834157895 10.1410161511380 9.98019021276887 9.88626586579132 10.1635837327294 10.024586031144 10.2463313797492 10.0183571652570 10.1584204139296 9.88608882199748 0.0881011906615331 0.0825404400348078 0.0848603240728463 0.0837118402352199 0.0845615575748559 0.0869963140463589 0.084126298112608 0.0827482817682106 0.090232361762708 0.0853124954624824 0.0856792814475141 0.0847040133594795 0.0820436992262332 0.0847728911025839 0.0883169350424485 0.0833068818566161 0.084861024504801 0.0865496367909494 0.0820436992262332 1 1|0 -|/ 17900461 17901384 17900956.778 17900266 17902472 - gene protein_coding_gene FALSE TRUE AT1G48420.1 D-CDES (D-CYSTEINE DESULFHYDRASE); 1-aminocyclopropane-1-carboxylate deaminase/ D-cysteine desulfhydrase/ catalytic Encodes an enzyme that decomposes D-cysteine into pyruvate, H2S, and NH3. Only D-cysteine but not L-cysteine was converted by D-CDes to pyruvate, H2S, and NH3. Unlike homologous bacterial enzymes, it does not have 1-aminocyclopropane-1-carboxylate deaminase activity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G26115.1); similar to putative 1-aminocyclopropane-1-carboxylate deaminase [Betula pendula] (GB:AAN74942.1); similar to Os02g0773300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048267.1); contains InterPro domain Pyridoxal phosphate-dependent deaminase; (InterPro:IPR005966); contains InterPro domain Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; (InterPro:IPR001926) 0.134847260017865 1.667253659342 0.132223725590157 1 2.01948908800858 20.0138596310604 0.134847260017865 0.0642068770414245
AT2G33600_at 6.162322141625 6.01801860319726 5.95028674322178 5.75128643176828 6.17803379149604 5.56873846386599 6.50152375993969 6.35633817519979 5.28176523178514 5.52622452187613 6.03224466747348 6.20390710169987 6.01126294186132 6.23974124965869 6.47992619514964 6.24811208719152 5.7327532543301 5.8840642948193 5.26136195774336 0.180413934447157 0.184267325577553 0.183950196434362 0.185419961292791 0.191918340515189 0.191620301611932 0.202031831035949 0.184023688415296 0.181672144704676 0.187824901496088 0.199836997371558 0.187063972778680 0.183436369554492 0.194821858287831 0.179551907730108 0.197782030278152 0.191042694454422 0.186054063979826 0.191071116769554 2 2 + 14234638 14235237 14234965.455 14233842 14235787 + gene protein_coding_gene FALSE TRUE AT2G33600.1 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33590.1); similar to Os06g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058105.1); similar to Os06g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058104.1); similar to cinnamoyl CoA reductase 2 [Solanum tuberosum] (GB:AAN71762.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.175043295576185 1.66629374211406 0.132417838912788 1 2.01825251295085 11.7910445360348 0.175043295576185 0.116442037649421
AT2G18790_at 7.36361514952649 7.32423968474732 7.23414381395918 7.25416503966981 7.54986448994964 7.1188986956289 7.72273890679022 7.30186168027945 8.20922954022576 8.28420005230191 8.31023383046125 8.05824630900029 8.17922750421377 7.69872646970115 8.04066469885678 8.05702146529155 7.99173274840525 7.76912142631918 8.11788607471127 0.169622051949616 0.166081051066652 0.171044399741469 0.169165220514366 0.166081051066652 0.182527525335934 0.170871277739312 0.170520744271315 0.187069142660197 0.169900310794131 0.166081051066652 0.167479358209476 0.167137604261108 0.172065099981714 0.170487608935400 0.166081051066652 0.192083726793280 0.167271378443398 0.166526238187547 2 2 + 8150392 8151176 8150799.909 8146963 8151512 + gene protein_coding_gene FALSE TRUE AT2G18790.1 PHYB (PHYTOCHROME B); G-protein coupled photoreceptor/ signal transducer Red/far-red photoreceptor involved in the regulation of de-etiolation. Exists in two inter-convertible forms: Pr and Pfr (active). Involved in the light-promotion of seed germination and in the shade avoidance response. Identical to Phytochrome B (PHYB) [Arabidopsis Thaliana] (GB:P14713;GB:Q6S4P0); similar to PHYA (PHYTOCHROME A), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT1G09570.1); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYE (PHYTOCHROME DEFECTIVE E), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G18130.1); similar to phytochrome B [Cleome hassleriana] (GB:AAW56607.1); similar to Phytochrome B (GB:P34094); similar to Phytochrome B (GB:P29130); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.164747964041240 -1.66578663228682 0.132520491527695 1 2.01759938203107 15.4671377803743 -0.164747964041240 0.10452565190936
AT1G13940_at 5.69782378392021 6.31107288620597 5.48349089800842 5.71606289131036 5.85795365487717 6.56886155550199 6.12199694575346 5.98009786919843 6.56869651359934 5.96199668474335 5.7280321449773 5.94991235067127 6.09056347455509 5.58311140553673 5.58807063655517 6.18857205884347 5.88318920180575 5.80105985905988 6.00903891892527 0.244426319248081 0.236478800092172 0.242688729340887 0.237872780797072 0.243363081727102 0.257348359382635 0.238675200029484 0.24405964732246 0.254282961297503 0.250433304599397 0.239518067451212 0.244890989520117 0.240269939510956 0.240000422255357 0.239080506264081 0.242310080854278 0.241305156435302 0.248753276544792 0.236388559323711 1 1 - 4762713 4763236 4762969.091 4762700 4766746 - gene protein_coding_gene FALSE TRUE AT1G13940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69360.1); similar to Os03g0758600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051334.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK16179.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98981.1); contains InterPro domain Protein of unknown function DUF863, plant; (InterPro:IPR008581) -0.224751217800221 -1.66557838080249 0.132562668340217 1 2.01733119168657 11.9829073592253 -0.224751217800221 0.169177161695725
AT1G14510_at 8.98892486555334 8.73660003121499 8.53961634488128 8.79219248788373 9.08783254141443 8.5046253746267 8.1223611156348 8.02082085268647 8.31166574237949 7.92813420980644 8.21034814266889 8.08017464554297 8.05016773233846 8.2711929081801 8.34537236814838 8.24919901802698 8.16921429705435 7.77822754001688 7.91808181976738 0.184600542469106 0.187999949221681 0.186235944849289 0.186608196171229 0.185025424686967 0.200923128468006 0.181640488379793 0.183674282049209 0.190950989687477 0.182023202608237 0.193760398592536 0.179465279474102 0.186336713850171 0.179465279474102 0.190337548398210 0.179465279474102 0.186004019210782 0.205905345712016 0.189642859258320 1 1|0 -|/ 4962186 4963216 4962551.2 4961881 4964423 - gene protein_coding_gene FALSE TRUE AT1G14510.1 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT2G02470.1); similar to PHD5 [Glycine max] (GB:ABI97244.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.177749897554246 1.66520252677624 0.132638820560435 1 2.01684719882384 16.6975538711444 0.177749897554246 0.119633673448469
AT1G15840_at 6.1046081288112 5.90218118355489 6.1386461450874 5.85315601015676 5.31269109289172 5.73128728583751 5.58648838297227 5.92585138139993 6.83960663043563 6.67224133968109 6.54640308449549 6.16544038687738 6.07882328358236 6.32524830920479 6.37440797631518 6.51221327613578 6.3726085150075 6.48079222837982 6.21841504144994 0.183562554796587 0.186998389774848 0.179408820615545 0.18305138001758 0.178218065321291 0.180048211613018 0.178218065321291 0.188403069084437 0.180284330194864 0.19399669547081 0.183571117536225 0.178218065321291 0.188394198754963 0.187052723038500 0.182160399263293 0.181419773365521 0.186630386107165 0.184723892431733 0.178699505144917 1 0|1 /|+ 5451793 5452051 5451932.4 5451427 5452369 + gene protein_coding_gene FALSE TRUE AT1G15840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49350.1); similar to PREDICTED: hypothetical protein [Rattus norve (GB:XP_001070790.1) -0.170299670190160 -1.66459483784744 0.132762029975213 1 2.01606477579288 12.2862369361833 -0.170299670190160 0.111196381996383
AT1G03350_at 8.22313054072133 8.38693847197706 8.53362668788475 8.45498095357594 8.5860324206273 8.63439455826826 8.3561080264271 8.41804829708765 8.55467228668798 8.40555340872918 8.57858042590146 8.57233538161149 8.56182485871884 8.53469610348642 8.40963504191883 8.55308271862621 8.47935740858217 8.33276765089507 8.45135309918202 0.097009808351376 0.0967938045674117 0.0954872527408362 0.101058244644936 0.0988369874456172 0.0957431682470307 0.105305672938819 0.100348696210700 0.100527640806707 0.099893149660837 0.0994117544003135 0.0965286383948637 0.0991919797513435 0.096226788203516 0.104193540561994 0.0958919547692826 0.101536979992044 0.103468747469532 0.100778606795855 1 1 - 822906 823372 823078.091 822638 824393 - gene protein_coding_gene FALSE TRUE AT1G03350.1 BSD domain-containing protein similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G13110.1); similar to PREDICTED: similar to Bsdc1 protein, partial [Strongylocentrotus purpuratus] (GB:XP_787471.2); similar to PREDICTED: similar to Bsdc1 protein [Strongylocentrotus purpuratus] (GB:XP_001192532.1); similar to Os07g0647400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060469.1); contains InterPro domain BSD; (InterPro:IPR005607) 0.119230502443478 1.66349539135488 0.132985210302491 1 2.01464953253432 16.9358131013631 0.119230502443478 0.0342603146941774
AT3G11490_at 4.76686777624975 4.94336635373596 4.09524032237207 4.38182233364762 5.04227272888892 4.89394168106257 5.69539765760953 5.24087713592785 5.95578809813647 5.58147090950753 6.94289346290687 6.92196388282827 6.76351600167573 6.17502239577048 6.64492286780561 6.06250677805007 5.24140401441766 5.51152730740482 6.60713419263826 0.22440291146929 0.229356283277636 0.243631526334633 0.223121425274286 0.233808777756709 0.228147029715901 0.220605688911207 0.224310312464611 0.231539690935730 0.230124148968206 0.223289913497016 0.224451989934902 0.220605688911207 0.222600830252189 0.225401326354158 0.220930222662352 0.237866074030177 0.220605688911207 0.223794600239501 3 3 - 3617565 3618165 3617865.636 3617529 3619573 - gene protein_coding_gene FALSE TRUE AT3G11490.1 rac GTPase activating protein, putative similar to rac GTPase activating protein, putative [Arabidopsis thaliana] (TAIR:AT5G22400.1); similar to RhoGAP; Wiscott-Aldrich syndrome, C-terminal [Medicago truncatula] (GB:ABD32671.1); contains InterPro domain PAK-box/P21-Rho-binding; (InterPro:IPR000095); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936); contains InterPro domain RhoGAP; (InterPro:IPR000198) -0.161734721145646 -1.66338532731047 0.133007571498701 1 2.01450787841910 11.0480235764959 -0.161734721145646 0.101184752849459
AT3G10090_at 8.61127991390345 8.8533401113883 8.42069881689927 8.49832863499307 8.55569861032232 8.4539316752166 8.34655660663444 8.38142215917186 8.48943070004137 8.4212163868307 8.29822239764086 8.37153042014044 8.64888454426865 8.63125204394801 8.18852765054888 8.31367724993068 7.94156964018514 8.25964945213131 8.63749482789194 0.122567254892101 0.115644399179974 0.117819331678838 0.115433250979964 0.120664661982354 0.115743460156898 0.120032055343198 0.127361931303641 0.119247146775550 0.120369247164572 0.118417293308301 0.119247139422040 0.119523693164754 0.116814978771521 0.11404784375636 0.115707097606448 0.121450256974531 0.123057105352772 0.118984183801353 3 3 - 3108985 3109124 3109040.818 3108815 3110031 - gene protein_coding_gene FALSE TRUE AT3G10090.1 40S ribosomal protein S28 (RPS28A) Identical to 40S ribosomal protein S28-1 (RPS28B) [Arabidopsis Thaliana] (GB:Q9SR73); similar to 40S ribosomal protein S28 (RPS28B) [Arabidopsis thaliana] (TAIR:AT5G03850.1); similar to ribosomal protein S28 [Prunus persica] (GB:CAA10101.1); similar to ribosomal protein S28 [Prunus persica] (GB:CAA10104.1); contains InterPro domain Ribosomal protein S28e; (InterPro:IPR000289) -0.125184196744389 -1.66322946985770 0.133039242222696 1 2.01430729492973 16.9390128059515 -0.125184196744389 0.0477679913348975
AT2G33470_at 10.5285280719963 10.7337608854858 10.8743571586869 10.8242967463848 10.8932292868960 10.5855759134402 10.8112776747450 10.7127030843999 10.3948479648518 10.3536934153762 10.671342843108 10.6054311458818 10.3861454750355 10.2537354645023 10.3939925068410 10.4310392656622 10.3467096328732 10.5848643804414 10.1062800266427 0.106480643662644 0.101492435767216 0.10279697567033 0.103730245034102 0.103633849327782 0.108254864555015 0.106173272226610 0.107498961429285 0.107488473715531 0.104123031800454 0.107184744121931 0.103426052908105 0.102402939616435 0.106450290137394 0.105388508402645 0.102686463850508 0.113912269348357 0.107045514885349 0.103144912770728 2 2|0 -|/ 14183819 14184669 14184145.8 14183456 14185729 - gene protein_coding_gene FALSE TRUE AT2G33470.1|AT2G33470.2 GLTP1 (GLYCOLIPID TRANSFER PROTEIN 1) similar to GLTP3 (GLYCOLIPID TRANSFER PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT3G21260.2); similar to Os02g0622400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047468.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC10199.1); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 0.136007233765755 1.66118953493846 0.133454401109362 1 2.01168277035726 21.1175151318794 0.136007233765755 0.0667986744687598
AT2G39770_at 8.85860256048994 8.9283778753256 8.37529886924097 8.29913240636015 8.57114715877658 8.30534932627979 9.06359532130259 9.15701968210773 8.84411229562208 8.84117299008085 9.3537624553489 9.40845526714809 9.25064002350695 9.33272389072154 9.30620960921474 9.30974185367615 8.82018090312278 8.81196721062113 8.83295180340327 0.112865120727746 0.111578042555292 0.114571823498076 0.114887308232618 0.114232552145651 0.121533096848386 0.114136266564148 0.115922478185631 0.121920102319700 0.114482611014478 0.109360672552847 0.112667264743501 0.109360672552847 0.118461270735287 0.114519754718750 0.110945891148454 0.121046581624845 0.120314342457736 0.116905376958841 2 2 + 16597258 16597661 16597484.636 16595780 16598063 + gene protein_coding_gene FALSE TRUE AT2G39770.1 CYT1 (CYTOKINESIS DEFECTIVE 1); nucleotidyltransferase Encodes a GDP-mannose pyrophosphorylase/ mannose-1-pyrophosphatase. This enzyme provides GDP-mannose, which is used for cell wall carbohydrate biosynthesis and protein glycosylation as well as for ascorbate (vitamin C) biosynthesis. similar to GDP-mannose pyrophosphorylase, putative [Arabidopsis thaliana] (TAIR:AT3G55590.1); similar to GDP-mannose pyrophosphorylase [Malpighia glabra] (GB:ABB53473.1); similar to GDP-D-mannose pyrophosphorylase [Viola baoshanensis] (GB:ABI48955.1); similar to GMPase [Medicago sativa] (GB:AAT58365.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.127184565503728 -1.66108471452698 0.133475765747243 1 2.01154795175073 17.7141266573381 -0.127184565503728 0.051929815947082
AT3G19290_at 7.46405768219193 7.72370952665622 7.66684253198015 7.75839869670633 8.46534901365775 8.28380362625088 7.5044327782705 7.34227920822536 6.98086074761291 6.88393294828911 6.94208700466835 6.41413757193977 7.07616136588248 6.62433076730132 5.92835517005305 7.07316019571187 7.24138877099963 6.73413786235219 7.19909960063324 0.176373900067195 0.170671955454791 0.174638739055749 0.170671955454791 0.173735558058774 0.171822623505149 0.177892682773474 0.171997389263484 0.178198133801375 0.178706199095650 0.177708267768165 0.184960302520662 0.172335886285009 0.17517664380153 0.184660893764443 0.170671955454791 0.177707127592298 0.182694474617954 0.173435736706551 3 3 + 6688661 6689765 6688999.273 6687146 6690129 + gene protein_coding_gene FALSE TRUE AT3G19290.1 ABF4 (ABRE BINDING FACTOR 4); DNA binding / transcription factor/ transcriptional activator bZIP transcription factor with specificity for abscisic acid-responsive elements (ABRE). Mediate ABA-dependent stress responses. similar to ABF1 (ABSCISIC ACID RESPONSIVE ELEMENT-BINDING FACTOR 1), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT1G49720.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.133950370707304 1.66088284520448 0.133516919854405 1 2.01128832129515 14.6638679350551 0.133950370707304 0.063597087348996
AT1G33490_at 8.65112762253781 8.78195122056375 9.08338282463239 8.9576521268635 9.4059294268221 8.59160974854322 8.95079154111705 8.64273036208578 7.54145205914299 8.09251947769599 7.8491378879062 8.04450521668564 7.95993817707828 8.14466082618475 8.05477413196233 8.25844376689128 7.83710996545264 7.7520442302528 7.83360301910835 0.145116825008160 0.147262515210794 0.143790193496346 0.147220733019876 0.145259495616280 0.150942331741387 0.146761941009016 0.142172484460698 0.160879989197054 0.149268265137122 0.149479967941057 0.145004018280458 0.144121067703647 0.145735780169420 0.151628845996744 0.141114032096156 0.17663983887789 0.148006492896775 0.149984917995111 1 1|0 -|/ 12150938 12152182 12151384.3 12150670 12152374 - gene protein_coding_gene FALSE TRUE AT1G33490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10140.1); similar to hypothetical protein LB305 [Leptospira interrogans serovar Lai str. 56601] (GB:NP_714849.1); similar to Os05g0105500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054411.1) 0.209022634229251 1.65980808829270 0.133736221034256 1 2.00990629022036 16.7881976727878 0.209022634229251 0.153905953951769
AT1G15960_at 2.71035906430507 2.58107137875906 4.25617167712279 3.872075081318 6.22942419397679 4.95723457607221 5.22896102263736 4.84921249532132 5.11262764716352 6.0779661875661 5.75228344701337 4.51999828949621 5.6025726656707 5.36460630190329 3.7959452570595 4.71546256691328 4.43459698393682 5.48395250955426 4.86201539136354 0.258388463788338 0.252233437146793 0.26281944741371 0.267726349043994 0.253740886826050 0.254462312403630 0.253448398970098 0.250704783769263 0.266109846768449 0.251762597576692 0.255814578723334 0.252684609216412 0.259930392642994 0.252978868407112 0.263256358454631 0.250704783769263 0.284614619365861 0.265137447405019 0.250906743188371 1 1 - 5482272 5482857 5482443 5481659 5485076 - gene protein_coding_gene FALSE TRUE AT1G15960.1 NRAMP6 (NRAMP metal ion transporter 6); metal ion transporter member of Nramp2 family Identical to Metal transporter Nramp6 (AtNramp6) (NRAMP6) [Arabidopsis Thaliana] (GB:Q9S9N8;GB:Q9C5V8); similar to NRAMP1 (NRAMP metal ion transporter 1), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT1G80830.1); similar to NRAMP family metal transporter [Chen (GB:BAE48710.1); similar to Os06g0676000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058349.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) 0.297066451264561 1.65908774734210 0.133883389249008 1 2.00898023642184 9.49033718355131 0.297066451264561 0.240223366039753
AT1G20640_at 7.7552936489365 7.84101674073926 6.57985454736083 7.31032423562977 8.15485490219096 7.92124949562706 7.6022194290775 7.50466834158304 7.31450770174168 7.43829082198624 7.10887987372608 7.38132853668209 7.46196005854497 7.15222983530345 7.3043140692828 7.32524578848408 7.47173539612278 6.74128247344832 7.56830519914436 0.191450635065698 0.183275462826843 0.193497612614825 0.199725137020875 0.185420226664917 0.192167743967169 0.183998381752749 0.189911964694107 0.203188912179129 0.185666409416095 0.184265124843706 0.188163604711869 0.191118026402623 0.185438873019211 0.185745724049777 0.189223505032933 0.193737709515827 0.192813485580913 0.1967264958657 1 1 + 7157440 7157930 7157662.091 7154400 7158208 + gene protein_coding_gene FALSE TRUE AT1G20640.1|AT1G20640.2 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76350.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.190612324278348 -1.65861454781129 0.133980146303218 1 2.00837200401534 14.9255551234298 -0.190612324278348 0.134607399014272
AT1G21050_at 8.89018313233414 9.11740220860927 8.60628215270904 8.66128034658251 9.4503014704972 8.91043967140599 8.33100643880608 8.32604566979703 7.97194144516456 7.86870306744283 6.38049659989509 7.51718091259377 8.19689022418882 7.37764690852744 7.3052508090734 7.92402253773726 8.49322484038259 6.62618659750067 8.28560194705063 0.174922112961680 0.175266049213216 0.178931560557732 0.175579458406906 0.179159447222377 0.180196759950174 0.177203983504517 0.174494295273229 0.197867642777913 0.184154610868294 0.195518262929088 0.175766194181033 0.179478776297842 0.177980272545705 0.190800399490265 0.175995487543503 0.188371675521455 0.189471724497539 0.173111779061104 1 1 + 7367022 7367408 7367236.364 7366764 7367667 + gene protein_coding_gene FALSE TRUE AT1G21050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76610.1); similar to Plant-specific domain of unknown function 3588 [Medicago truncatula] (GB:ABE91797.1); contains InterPro domain Protein of unknown function DUF617, plant; (InterPro:IPR006460) -0.161776588284955 -1.65849941459408 0.134003697750062 1 2.00822402847029 16.5464649273210 -0.161776588284955 0.101812734485968
AT4G24670_at 3.63402536417137 4.37259478809025 4.65815592646695 4.38474680395065 5.44423814974049 5.12117862792609 7.17986834575157 7.24767125018578 4.97065586334843 5.23593328398473 5.29705322798767 6.13001579802948 5.52752388714726 5.55826229207166 5.52443579923309 6.16151998723216 5.44744636501382 4.77077319654563 5.54818105681762 0.236678936570230 0.220094278593167 0.220617239567641 0.216914174572323 0.229129772464544 0.240201265328222 0.229197008961824 0.232338544452778 0.235517972255772 0.228890539286275 0.224134848655235 0.225822825927126 0.21933587209341 0.230568434777914 0.221429203683908 0.223743716583008 0.240936181251609 0.218817200215398 0.219123198783912 4 4|0 -|/ 12727953 12728681 12728367.778 12727844 12731284 - gene protein_coding_gene FALSE TRUE AT4G24670.1|AT4G24670.2 alliinase family protein similar to alliinase family protein [Arabidopsis thaliana] (TAIR:AT1G23320.1); similar to Alliinase EGF-like; Allinase, C-terminal [Medicago truncatula] (GB:ABE79686.1); contains InterPro domain Allinase, C-terminal; (InterPro:IPR006948) -0.202960654460681 -1.65836765374175 0.134030655168692 1 2.00805468805747 10.6571693506393 -0.202960654460681 0.147777135067632
AT3G02180_at 9.97042934424194 10.0873505280396 9.55212836921478 9.72353011583385 9.9341423187634 9.87990957527601 9.90627120993226 10.1717393967678 10.6538627434817 10.4643149477496 10.7005326266310 10.7150947010277 10.4284084039530 10.482919438892 10.7945742149462 10.4699064926627 10.0484920458636 10.7283089290810 10.5207166692126 0.073368233272984 0.069924788329431 0.0751681463164902 0.0699643061701712 0.070963623532139 0.0782336774533278 0.06887119486895 0.0709281275830407 0.0785492314288632 0.072013814017371 0.0736698767928841 0.0712233159706907 0.0691498833541024 0.0724296965128974 0.0726720595039561 0.0702591587636981 0.0771245123130985 0.0694248461088537 0.0689369273914422 3 3|0 +|/ 405028 405433 405248.111 404740 405661 + gene protein_coding_gene FALSE TRUE AT3G02180.1|AT3G02180.2 SP1L3 (SPIRAL 1-LIKE3) SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. similar to SP1L4 (SPIRAL1-LIKE4) [Arabidopsis thaliana] (TAIR:AT5G15600.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96926.1) -0.130894269244594 -1.65711538133297 0.134287110004916 1 2.00644556826771 20.4493514706488 -0.130894269244594 0.0590579740881744
AT2G37250_at 6.6584373087873 6.88329100073101 6.69367199853251 6.76020439816200 6.1152891184297 5.9487557830624 6.38681963007323 7.03181744585439 5.96942115075481 6.02400893014505 6.27965836869439 6.67694544264449 6.20341699266373 5.65268167229338 6.24612103942315 5.95642210605797 5.58667256530621 6.03297053156266 6.23786898579966 0.222014999875291 0.216736458009713 0.21756236445955 0.222655231073073 0.218439085514379 0.214754587575295 0.223173126848175 0.219232750945340 0.225750635933537 0.235767439682174 0.219094028392978 0.214754587575295 0.218550938646427 0.22573366422339 0.219132997171668 0.214807466231458 0.232649911171649 0.219163769258261 0.232084810263879 2 2|0 +|/ 15649329 15650317 15650000 15648985 15650865 + gene protein_coding_gene FALSE TRUE AT2G37250.1 ADK/ATPADK1 (ADENOSINE KINASE); nucleotide kinase encodes adenylate kinase that is located in the chloroplast involved in the coordination of metabolism and growth Identical to Probable adenylate kinase 1, chloroplast precursor (EC 2.7.4.3) (ATP- AMP transphosphorylase) [Arabidopsis Thaliana] (GB:Q9ZUU1); similar to adenylate kinase family protein [Arabidopsis thaliana] (TAIR:AT2G39270.1); similar to Adenylate kinase, chloroplast precursor (ATP-AMP transphosphorylase) (GB:Q8HSW1); contains InterPro domain Adenylate kinase, subfamily; (InterPro:IPR006259); contains InterPro domain Adenylate/cytidine kinase, N-terminal; (InterPro:IPR011769); contains InterPro domain Adenylate kinase; (InterPro:IPR000850) -0.179174810441959 -1.65708003501155 0.134294355149301 1 2.00640015790584 12.6380162248194 -0.179174810441959 0.122214001676494
AT4G04890_at 6.56837579998037 7.22292550778922 6.29179822352891 5.99530269304493 6.47793270141545 6.59763237391384 7.47065155311934 7.82508693895938 8.32831558860502 7.73597635916178 9.06800658366028 9.20663625493214 8.43599402118751 8.75707579247283 8.69423822530218 8.26850027155727 7.98828815791069 8.48495076471322 8.15461459694431 0.201578927637678 0.19476202131436 0.206737165523193 0.202993681246930 0.193786306884389 0.207882495441507 0.196710559680392 0.196643294278300 0.206065942474476 0.203958138587726 0.192645520229259 0.195725143131952 0.192645520229259 0.203199606541352 0.192756615236876 0.192645520229259 0.206689240205319 0.197836799329273 0.194805260707483 4 4 - 2477037 2477730 2477278.364 2476487 2482307 - gene protein_coding_gene FALSE TRUE AT4G04890.1 PDF2 (PROTODERMAL FACTOR2); DNA binding / transcription factor Encodes a homeodomain protein that is expressed in the LI layer of the vegetative, floral and inflorescence meristems. Binds to the L1 box promoter element which is required in some proteins for L1 specific expression. similar to ANL2 (ANTHOCYANINLESS 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00730.1); similar to homeobox-leucine zipper family protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G05230.2); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeobox protein (GB:AAB37230.1); similar to A20 (GB:AAB49378.1); similar to GL2-type homeodomain protein [Oryza sativa (japonica cultivar-group)] (GB:BAC77155.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.195550520628160 -1.65634530048605 0.134445039087833 1 2.00545632743087 15.1491782775710 -0.195550520628160 0.140195360346736
AT2G28070_at 5.39076191213214 5.30833358668631 5.40780853600304 5.08919711910665 5.52406251015526 4.85353518498935 4.57989079616902 4.67431279822921 4.92189654737107 5.40689238509983 4.56660964137508 5.00737665676905 4.96722827667486 4.41799845549751 4.69458751262999 5.11602267360227 4.63222632090293 4.63458482654261 5.74392928139621 0.205024404077423 0.202183131709457 0.201742304588778 0.205025687013839 0.203419837980171 0.209817383632536 0.204136738534825 0.200403332322502 0.216252140050727 0.200403332322502 0.206645921619121 0.200403332322502 0.207936701227907 0.207245150895994 0.200403332322502 0.200403332322502 0.213734910567748 0.206905110272381 0.204766088953093 2 2|0 +|/ 11965836 11966805 11966245.889 11963509 11966859 + gene protein_coding_gene FALSE TRUE AT2G28070.1 ABC transporter family protein similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to Os03g0859500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051967.1); similar to ABC transporter family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG00010.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.186333689098504 -1.65589025313912 0.134538440635562 1 2.00487187768976 10.1595638221614 -0.186333689098504 0.130289599595688
AT4G08930_at 7.01323025947741 6.9096471456289 7.73304924792448 7.76313243846553 7.82728330242926 7.65234903034489 7.75486125724765 7.57968299404612 7.93911792861055 7.53741312556343 8.19725922683766 7.28537317090579 7.70393830574953 7.97924055861897 6.93196983307633 7.67636241239507 7.45288356134814 7.28819923766083 7.76133777401854 0.140327667269565 0.142203269673418 0.142387507396526 0.146943956877511 0.137793284555870 0.137793284555870 0.139887609391694 0.140150806912021 0.146205186896673 0.140025048523152 0.146252583729381 0.138329085937257 0.141869265039937 0.145765250836702 0.144771666584407 0.140796107398727 0.140775090099213 0.146544116317585 0.143997732683337 4 4 + 5730096 5730651 5730363.7 5729189 5730847 + gene protein_coding_gene FALSE TRUE AT4G08930.1 ATAPRL6 (APR-LIKE 6); electron carrier/ protein disulfide oxidoreductase Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. similar to ATAPRL4 (APR-LIKE 4), electron carrier/ protein disulfide oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G34780.1); similar to adenosine 5'-phosphosulfate reductase 3 [Zea mays] (GB:AAW63053.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.124022551475442 1.65461587084937 0.134800332401945 1 2.0032354978852 15.1843342416396 0.124022551475442 0.046732412513691
AT2G20410_at 5.30012878274427 5.37289776558595 5.17906377363967 5.50175873249126 5.55469269358323 5.67818590978904 5.22278286714937 4.87747589923295 5.10229632405289 4.47237781641953 4.78545286157478 4.85870867354292 4.57500939635114 4.87377840888833 4.51760546116560 4.98186567371734 4.83635091397609 4.95473168892339 4.78482656744964 0.202058993964596 0.211042237247348 0.213647762001265 0.200502865045238 0.217941002246950 0.209346942958460 0.208406944021222 0.200851930898282 0.207337611578971 0.202717070643126 0.20346377482733 0.199613134474954 0.201696438215003 0.201352827626784 0.211751867764259 0.199613134474954 0.213251245652035 0.209102443353449 0.202877617987696 2 2|0 +|/ 8810623 8810947 8810772.778 8809425 8811451 + gene protein_coding_gene FALSE TRUE AT2G20410.1 activating signal cointegrator-related similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44740.1); contains domain SUBFAMILY NOT NAMED (PTHR12963:SF8); contains domain FAMILY NOT NAMED (PTHR12963) 0.148270798745545 1.65184057310776 0.135372284584143 1 1.99967390178524 10.1280923633977 0.148270798745545 0.0854677789483855
AT3G12360_at 9.601434642483 9.71568819272775 9.68808432893007 9.76762245978317 9.896336658633 9.62978930015853 9.04465792515643 9.17012525022646 9.5684835202166 9.22713194111742 9.34676517387361 9.2567933745925 9.21083278184984 9.40235180981524 8.99416912032766 9.30366124720423 9.16848013559495 9.29818223986584 9.26157072919501 0.107295813641468 0.109637782725238 0.109851763322225 0.114436725685609 0.111029445417655 0.110018622312506 0.110345226318409 0.106620491775648 0.112675450447696 0.110048126599551 0.108511458333757 0.107075186704785 0.107759859799538 0.113662190091336 0.108845574673952 0.108961810574812 0.111312732829416 0.109412943754461 0.107863344610452 3 3 + 3936013 3936475 3936266.364 3934085 3936701 + gene protein_coding_gene FALSE TRUE AT3G12360.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G09550.1); similar to Os03g0281000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049740.1); similar to Os01g0837000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044735.1); similar to hypothetical protein, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAN64471.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.128870386387631 1.65103360268309 0.135539006641949 1 1.99863882738720 18.8642422858790 0.128870386387631 0.0563876075538978
AT1G79040_at 14.2051643716428 14.3547688172209 14.4854808724199 14.5147310215838 14.3042729286057 14.3936551572771 14.3929598061586 14.5269169862914 14.8260048949585 14.8679816010946 15.1688183038431 15.0868828203810 15.035529174266 15.042039398762 14.8674095311294 14.9693763798653 14.8575211788734 14.9632316384129 14.7465444740171 0.0500256404814907 0.0484886368962598 0.0499794645141581 0.0498070444288775 0.0482920432179172 0.0497611519898423 0.0487892458383754 0.0492428384493659 0.0521199331718124 0.0482920432179172 0.048572597633025 0.0489785645989266 0.0488754649515701 0.0510535691028843 0.0483989573122453 0.0483759948001394 0.0548933893046508 0.0515917804006363 0.0491749974658409 1 1|0 +|/ 29740981 29741649 29741287.6 29740909 29741902 + gene protein_coding_gene FALSE TRUE AT1G79040.1 PSBR (photosystem II subunit R) Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ. Identical to Photosystem II 10 kDa polypeptide, chloroplast precursor (PSBR) [Arabidopsis Thaliana] (GB:P27202); similar to Photosystem II 10 kDa polypeptide, chloroplast precursor (GB:P49108); contains InterPro domain Photosystem II protein PsbR; (InterPro:IPR006814) 0.119961614739038 1.65098696182728 0.135548648495027 1 1.9985790099695 29.3034244334242 0.119961614739038 0.0383739772581412
AT2G25720_at 6.56148236200816 6.72674213466612 6.8686371523684 6.80731525770612 6.81071517019835 6.72459014579276 6.79514625169453 6.77563636599744 5.22767606166444 6.13619105513833 6.19901684870649 6.41507036890352 5.89444273673318 6.26381789510276 6.40183225751084 6.35824393686184 5.43720698440714 5.22175759056089 6.2625002885147 0.244336451102265 0.236447816185052 0.237896019433408 0.231564082674032 0.235944450030511 0.247453174063419 0.238884125078007 0.238244002152007 0.241577984234796 0.232895896185651 0.239486901888363 0.236401211675624 0.237092747913098 0.24388129253151 0.23144400861518 0.230690229215616 0.254229455103219 0.248559484490629 0.232652286274828 2 2 - 10962745 10963071 10962887.091 10962597 10963130 - gene protein_coding_gene FALSE TRUE AT2G25720.1 similar to hypothetical protein SDM1_56t00007 [Solanum demissum] (GB:AAU90329.1) 0.118265214250347 1.65077118514960 0.135593263195912 1 1.99830228432252 12.7084727946144 0.118265214250347 0.0341182537198349
AT4G37560_at 9.03643975273651 9.18636194742032 9.73132950254444 9.6940241187553 9.64028165480489 9.12688104494837 9.86356824475513 9.45180605425643 9.02080282127114 9.42125563041454 8.52821889533417 8.58135934272267 8.50674367557243 8.69243540619864 8.43964281781668 9.28766324392955 9.13349137163124 8.3802315643039 9.17246426621255 0.151640650947579 0.146213438492538 0.149559583416082 0.149196774986524 0.148545640748664 0.15749363821366 0.148400557127294 0.150134082194780 0.175417547599928 0.146579456617970 0.158435147694540 0.157174986739975 0.146677475673131 0.156318527264572 0.152912596734885 0.146213438492538 0.166840094325635 0.164182183516046 0.151497127706968 4 4 + 17647549 17648170 17647910.182 17646402 17648678 + gene protein_coding_gene FALSE TRUE AT4G37560.1 formamidase, putative / formamide amidohydrolase, putative similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37550.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346.1); similar to formamidase [Synechococcus sp. WH 5701] (GB:ZP_01084549.1); contains InterPro domain Acetamidase/Formamidase; (InterPro:IPR004304) -0.173766267903132 -1.64961057928560 0.135833464366635 1 1.99681414215532 18.4156186378550 -0.173766267903132 0.116987595097859
AT2G23080_at 7.98065048841557 8.31189504651866 8.12540368363635 8.1863317004739 8.79295005929251 8.2565882366011 8.47172032037754 7.72405793979594 7.19415474051079 7.05313919173328 7.13771976765298 7.18930590815147 7.58442416522128 7.6690061894874 7.09854880425203 7.49932005770636 7.4967487743097 6.92283319122626 7.04408774234207 0.197175404281444 0.190103178974262 0.196957639115647 0.196057332840208 0.191787250048011 0.199496186745443 0.189655494176168 0.191770440488505 0.204028309760322 0.193829854601847 0.195125092773217 0.196770051272019 0.195117384620541 0.190220238369313 0.197310835775983 0.198805244657716 0.206472529666360 0.205391499670007 0.194021944554715 2 0|2 /|+ 9835199 9836164 9835628 9834193 9836617 + gene protein_coding_gene FALSE TRUE AT2G23080.1|AT2G23080.2 casein kinase II alpha chain, putative Identical to Probable casein kinase II subunit alpha (EC 2.7.11.1) (CK II) [Arabidopsis Thaliana] (GB:O64817); similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to CKA2 (casein kinase II alpha chain 2), kinase [Arabidopsis thaliana] (TAIR:AT3G50000.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82533.1); similar to protein kinase CK2 alpha chain [Nicotiana tabacum] (GB:CAD27342.1); similar to protein kinase 2 [Beta vulgaris] (GB:CAC80988.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to CKA1 (CASEIN KINASE ALPHA 1), kinase [Arabidopsis thaliana] (TAIR:AT5G67380.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82533.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.222924301806464 1.64918165384831 0.135922334004852 1 1.99626429382067 15.4421324754454 0.222924301806464 0.169568689513326
AT1G56060_at 5.37410401709704 5.32076680467082 6.67274652144585 7.01140046497818 4.52699605216936 5.39348385094353 3.77380854120965 4.02675983696738 5.33952645539779 4.93267240502304 3.70196906377329 3.66442650927778 4.42007055489376 4.40856691071914 4.78400719924055 4.3034865066723 3.89305995861293 4.71870276676352 4.94726232987571 0.241903913541902 0.238623095457901 0.242490062051103 0.248861136415943 0.241937687217406 0.240760759110066 0.241029526466309 0.243321617258117 0.245397910737247 0.236631086037134 0.238207708129815 0.237545187885582 0.241706686228968 0.240159478130842 0.253238441966003 0.240552751368352 0.247462653111485 0.236631086037134 0.242229276741932 1 1|0 -|/ 20970404 20970774 20970585.222 20970193 20970809 - gene protein_coding_gene FALSE TRUE AT1G56060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32190.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32591.1) 0.220464688021659 1.64897571274989 0.135965022104699 1 1.99600031764316 9.91747821810673 0.220464688021659 0.167095620191036
AT3G14600_at 9.35424018653671 9.54814057169981 8.80484561343811 8.68532733278704 9.4626683474214 9.09787266828059 8.9490686186776 9.15866600033694 8.8508146828988 8.91772433538783 9.33553260754396 9.37581238548328 8.89553140291196 8.72245231127522 9.46461716803586 8.62659628751874 8.45669462044461 8.32519456164659 9.08856040671698 0.144143127935252 0.141503078472598 0.145680221305086 0.142498034202086 0.142946745109304 0.149346416388771 0.141508617081236 0.142373936000425 0.144764893248587 0.146609356875845 0.140486976568289 0.141121061324287 0.137402352059738 0.152867489995824 0.145645436780832 0.140433987301778 0.163254452174589 0.150957708806008 0.141176168271419 3 0|3 /|+ 4911266 4911847 4911571.4 4910704 4912180 + gene protein_coding_gene FALSE TRUE AT3G14600.1 60S ribosomal protein L18A (RPL18aC) Identical to 60S ribosomal protein L18a-3 (RPL18AC) [Arabidopsis Thaliana] (GB:Q9LUD4;GB:Q8L9M5); similar to 60S ribosomal protein L18A (RPL18aB) [Arabidopsis thaliana] (TAIR:AT2G34480.1); similar to unknown [Solanum tuberosum] (GB:ABA46783.1); contains InterPro domain Ribosomal L18ae protein; (InterPro:IPR002670) -0.145956455362330 -1.64812341777727 0.136141818767237 1 1.99490800764162 18.0589388639516 -0.145956455362330 0.0827933968530313
AT1G23330_at 5.44061025613874 5.9660591525683 5.72192873399587 5.69407248544374 5.75937959986364 5.10450232607971 6.27202090731656 6.53199243245522 4.1403151695294 4.74694374608433 4.41081515576754 4.22129434946322 4.73318893501846 4.3633186971135 4.26610992521573 4.84075743982634 4.76030926187659 4.80290724433656 4.54955394896681 0.259531777889483 0.262328065927455 0.270336983716065 0.257558448210586 0.266667098257554 0.281045553587573 0.263002403221679 0.265545088829926 0.259791079908522 0.257419126986437 0.264945030947667 0.257419126986437 0.262045026568588 0.267420451304316 0.263765126191182 0.266876954059886 0.270806086352790 0.260618240588954 0.257419126986437 1 1 - 8279902 8280623 8280350.636 8279577 8281880 - gene protein_coding_gene FALSE TRUE AT1G23330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10740.1); similar to Os05g0408300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055523.1); similar to lipase [Clostridium tetani E88] (GB:NP_781602.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.205899948111782 -1.64812117000417 0.136142285314030 1 1.99490512722477 10.3257083605348 -0.205899948111782 0.152182066431547
AT1G27320_at 7.93005983247908 8.12581807074074 7.75675185716662 8.13598524109096 8.56603512204057 8.38230485389069 8.07092231255572 8.2273965794476 8.30975546022862 8.11407057208582 8.51491832848138 8.16453644380719 8.61495347910113 8.39537440458254 7.91362561587472 8.74689670893258 8.59773323690635 8.11480951442759 8.20582653263992 0.138590819522064 0.132567653709374 0.155565340352355 0.135654905569486 0.131631646638798 0.142549131701197 0.129760481710623 0.132810643889428 0.139660313528745 0.129076581108044 0.129353140281436 0.137394805755403 0.130827416173723 0.134672503975942 0.139456258876618 0.130183073104918 0.143958381082027 0.137561668442963 0.135938399282925 1 1 + 9491326 9491980 9491606.545 9487767 9492280 + gene protein_coding_gene FALSE TRUE AT1G27320.1 AHK3 (ARABIDOPSIS HISTIDINE KINASE 3) Encodes a histidine kinases, a cytokinin receptor that controls cytokinin-mediated leaf longevity through a specific phosphorylation of the response regulator, ARR2. similar to WOL (CYTOKININ RESPONSE 1) [Arabidopsis thaliana] (TAIR:AT2G01830.1); similar to AHK2 (ARABIDOPSIS HISTIDINE KINASE 2) [Arabidopsis thaliana] (TAIR:AT5G35750.1); similar to histidine kinase 1 [Lupinus albus] (GB:ABJ74170.1); similar to histidine kinase SHK278 [Striga asiatica] (GB:ABD79028.1); similar to histidine kinase 1 [Medicago sativa] (GB:ABJ74169.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain CHASE; (InterPro:IPR006189); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.147345923968744 1.64669639121331 0.136438305988368 1 1.99307971261962 16.4457793110927 0.147345923968744 0.0848462600470271
AT1G80180_at 10.7270787605162 10.8162041757144 11.1333513558485 11.2449523965593 11.5938000637774 11.3338569588109 10.592209037404 10.5917808004135 11.1653487930826 10.8970393040393 10.5258350869913 10.0445387604455 10.8115963246899 10.6359412567640 10.1831519946033 11.0045822254648 11.0286511039385 10.6673525473634 10.9552060349633 0.0780233463560541 0.0766192287781608 0.0805914018822645 0.078954670716503 0.0791910306400415 0.0818451403107949 0.0799878680432208 0.0767155039756203 0.0844583785094005 0.0806452179333372 0.0766192287781608 0.0786956787583608 0.0796074950924682 0.0806407507681634 0.0802963282322747 0.0766192287781608 0.0778284718030246 0.0808045278463816 0.0818974093371937 1 1 - 30161950 30162341 30162166.273 30161718 30162476 - gene protein_coding_gene FALSE TRUE AT1G80180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15400.3); similar to Os06g0601100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058003.1); similar to Os01g0174100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042161.1) 0.125756726037280 1.64660340481164 0.136457645840428 1 1.99296060515102 21.8134396302444 0.125756726037280 0.0513271885944054
AT3G51370_at 9.55090297297162 9.46006018053104 9.65525034229122 9.47877187068405 10.0542283352269 9.53716837944318 8.9750924020288 8.82682349121139 9.61926490979503 9.22376889139196 9.40898462671963 9.11891353930323 9.47925496397045 9.3371183744209 8.90692774592547 9.42800470047833 9.25721123342906 9.08789436132196 9.40011372187191 0.110451555382668 0.108296397175975 0.109628229672736 0.112892305799489 0.113913303286506 0.113423518905431 0.114069782933134 0.116314751487092 0.123919501117235 0.109077118158372 0.110427341472158 0.110717186197599 0.115369448993631 0.109411619781524 0.111467711203216 0.111098660713302 0.118287716095900 0.116397772730378 0.109890504090716 3 3|0 +|/ 19081706 19082923 19082455 19080342 19083174 + gene protein_coding_gene FALSE TRUE AT3G51370.1|AT3G51370.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C family protein / PP2C family protein [Arabidopsis thaliana] (TAIR:AT5G66080.1); similar to protein phosphatase 2c-like protein [Thellun (GB:AAM19705.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.158395577867726 1.64543375296522 0.136701130860904 1 1.99146265481756 18.7759978472397 0.158395577867726 0.0992211192525023
AT1G70890_at 9.01492547318876 8.99242765482038 7.83457653813602 7.75817968867993 8.59264327520121 8.41201068304066 9.22592778848426 8.90114244397376 7.57099302679071 9.36228558394548 10.1419825310081 9.76742555936586 10.3377311967204 10.4890961771738 9.84208546706478 9.85293448034932 10.0019779035171 10.1410009223857 9.8250183100204 0.147304473091597 0.152430159866418 0.163421116640217 0.157906737084207 0.153040437807426 0.157395339981820 0.150231821780978 0.147646284765653 0.183089828611179 0.149210527761078 0.149480762736068 0.148047809105225 0.149115879101858 0.148181372338539 0.145246417783051 0.14609250512107 0.155375268045456 0.145533176440940 0.147609463035833 1 1 - 26729681 26730080 26729827.182 26729288 26730206 - gene protein_coding_gene FALSE TRUE AT1G70890.1 major latex protein-related / MLP-related Identical to MLP-like protein 43 (MLP43) [Arabidopsis Thaliana] (GB:Q9SSK5); similar to MLP28 (MLP-LIKE PROTEIN 28) [Arabidopsis thaliana] (TAIR:AT1G70830.3); similar to major latex-like protein [Prunus persica] (GB:AAK14060.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.134046839463464 1.64520672702119 0.136748436557287 1 1.99117196547586 18.0870849864991 0.134046839463464 0.0657735870174845
AT3G15770_at 6.8293517799759 6.39745532331428 6.83769877057184 6.77804844063729 7.06544008343921 6.53356660511011 6.79407159214716 6.09178615576123 7.7198046565513 6.53705555522633 6.95306785886845 6.17797485682483 5.64384535482883 6.26157449551688 6.35435763278175 6.592886369489 6.21706495248733 6.68290273686046 6.98854674058358 0.187172815455747 0.177751632182617 0.179591735980733 0.189374340718031 0.183163965389492 0.181263436730585 0.180234768241641 0.187226945755264 0.205699999489147 0.189462449947681 0.181197216706359 0.187445389185133 0.185925527868391 0.184752349042954 0.190199698894661 0.185945815205172 0.183171962743833 0.186684683447784 0.180139737502358 3 3|0 +|/ 5340611 5341049 5340804.75 5340081 5341346 + gene protein_coding_gene FALSE TRUE AT3G15770.1|AT3G15770.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25360.1); similar to hypothetical protein [Glycine max] (GB:AAN03467.1) -0.222910386553286 -1.64518667115033 0.136752616344564 1 1.99114628638125 13.3870581437001 -0.222910386553286 0.170103750784219
AT3G11400_at 8.92344672560673 9.03944801756352 8.84449059094285 8.86240535275124 8.88797305376117 8.86669921051319 8.83536122573483 9.04890855752882 8.49778527256552 8.32720077472182 8.13439317727903 8.34085604129653 8.43089244713632 8.10913156749703 8.72990575439138 8.14505478796535 7.95799470697169 8.07756820403968 8.33531944498898 0.120602674802228 0.126032740961189 0.125940532937985 0.123330986280661 0.126196193542303 0.126147549712893 0.121900375854329 0.121042068913362 0.125916576716232 0.124549382547818 0.123586885966259 0.121309882223785 0.121807714392498 0.121136804618499 0.126398334618862 0.118788287607605 0.140766486941844 0.128512774271849 0.123560434250895 3 3|0 +|/ 3578844 3580346 3579952.2 3578394 3580575 + gene protein_coding_gene FALSE TRUE AT3G11400.1 EIF3G1 (eukaryotic translation initiation factor 3G1); RNA binding / translation initiation factor One of the 2 genes that code for the G subunit of eukaryotic initiation factor 3 (EIF3). similar to EIF3G2 (eukaryotic translation initiation factor 3G2), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT5G06000.1); similar to RNA-binding re (GB:ABE81433.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.121221495609837 -1.64480831951036 0.136831489412655 1 1.99066188105878 17.2273381334241 -0.121221495609837 0.042330273658564
AT4G11420_at 8.39608336096359 8.4262420867163 7.97370540232621 8.12526962147657 8.02133509785171 8.09793709472818 8.15457285879542 8.04711275803103 7.64814032211249 7.73430158732456 7.4560479044228 7.97012968173691 7.37692290700417 7.45331925906456 7.89189854398601 7.58542926977676 7.81594014772348 7.49420858703651 7.61378654916449 0.133361836371264 0.133714269961027 0.135526402409909 0.130171125475054 0.128793958955076 0.139481291528726 0.130510074193056 0.131777627736021 0.140620827781080 0.135418526742770 0.135150864712160 0.129632365794458 0.137669781882058 0.137538570134280 0.133757723990770 0.132599628867533 0.145587316030830 0.135147435977282 0.136272093654556 4 4 - 6947844 6948192 6948011.636 6947471 6952438 - gene protein_coding_gene FALSE TRUE AT4G11420.1 EIF3A (eukaryotic translation initiation factor 3A) Encodes a subunit of eukaryotic initiation factor 3 (eIF3), a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilization of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Identical to Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (p114) (TIF3A1) [Arabidopsis Thaliana] (GB:Q9LD55); similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to unnamed protein product [Homo sapiens] (GB:BAD18434.1); similar to Proteasome component re (GB:ABE82093.1); similar to Eukaryotic translation initiation factor 3 subunit 10 (eIF-3 theta) (Eukaryotic translation initiation factor 3 large subunit) (eIF3a) (PNLA-35) (GB:Q40554); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) -0.118181705318762 -1.64407000020119 0.136985522821722 1 1.98971675946473 15.8032305470083 -0.118181705318762 0.0351675011679809
AT1G62930_at 4.88150313815597 5.12460898286579 4.8347573982031 4.8823202971684 4.64180022988735 4.99853500099305 4.77225879027232 5.30616426188154 5.43585964729094 6.10070210338519 6.10081807409556 5.89194034054464 5.36518613475565 5.74360728839864 5.11436942256454 5.47966016252342 5.48600290603264 5.07760538827987 5.56524246827076 0.255637918589459 0.251527977615633 0.258143721031508 0.251527977615633 0.265370550829001 0.260632335126638 0.261563909870967 0.260512963253763 0.265599138560087 0.259068468632332 0.26132374010367 0.264444812040342 0.269828006362069 0.263995017047886 0.260389368252105 0.251527977615633 0.284448204620097 0.252187397597166 0.251527977615633 1 1 + 23311581 23312265 23312028 23310199 23312348 + gene protein_coding_gene FALSE TRUE AT1G62930.1 binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63080.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G62670.1); similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G63130.1); similar to fertility restorer [Raphanus sativus] (GB:CAD61285.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.174991626698596 -1.64371567326362 0.137059501252687 1 1.98926325742005 10.5467435729109 -0.174991626698596 0.119103535711974
AT1G53165_at 4.50101281709551 4.88822278417088 4.72240467152664 4.7952610247702 5.00706687067684 4.36321958576083 4.45749938467414 4.32791339760918 4.83075468271308 4.20723224940799 5.0276130538531 4.77051670752636 5.48174088867592 4.8250661272455 4.54294566739637 5.02519302873337 4.66613355697536 4.22714198698868 4.83740666316172 0.202034623977558 0.199687421177868 0.210271838751021 0.202735631164994 0.201410120413735 0.207778223891954 0.198774956938318 0.201496692322973 0.202731388287715 0.198798814502579 0.203187936708960 0.199366900006488 0.20191627619122 0.202617545664289 0.200726790096501 0.200107825609528 0.204845249568537 0.201800398052978 0.205167592311739 1 1 + 19822121 19822864 19822443.273 19817472 19823232 + gene protein_coding_gene FALSE TRUE AT1G53165.1|AT1G53165.2 kinase| similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G15220.1); similar to BnMAP4K alpha1 [Brassica napus] (GB:CAA08757.1); similar to putative MAP4 kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83751.1); similar to BnMAP4K alpha2 [Brassica napus] (GB:CAA08758.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.186994310521468 1.64358856980192 0.137086047541638 1 1.98910058935212 9.35578760483649 0.186994310521468 0.132539025337817
AT3G51890_at 9.07544772210324 9.16584338914112 9.40313269693818 9.46951314804717 9.00851149881216 9.0280065140152 8.08613920684743 7.86327818088447 8.68603589030382 8.19812835139686 7.87863696432961 7.90457900500889 7.81346214129819 7.79167050309801 7.47990555934735 8.11727289840837 8.26197470768711 8.30194350745928 8.2567432454817 0.148960772687425 0.147650391543595 0.151884053824841 0.148677887778387 0.148234581090400 0.152660644368375 0.152482537322008 0.151260470129050 0.150672933549323 0.154175378646382 0.153629285377033 0.157138788562639 0.165271400105652 0.149734038792191 0.159424262778866 0.146257500436785 0.152322416914534 0.157472326031967 0.146279265435967 3 3 - 19260701 19261638 19261006.455 19260457 19261952 - gene protein_coding_gene FALSE TRUE AT3G51890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83515.1); contains InterPro domain Clathrin light chain; (InterPro:IPR000996) 0.121496002405627 1.64252200267974 0.137308991321711 1 1.98773582299822 17.0494756228771 0.121496002405627 0.043306850410953
AT3G45780_at 10.9168872479303 11.2090849159786 11.1315057948009 11.1754259967022 11.8342334712464 11.4530184741195 11.5576604630524 11.4068645357383 11.4314201665843 11.3286990253928 11.7212947097528 11.6062140643803 11.7358415844096 11.5667785296606 11.4933049510560 11.6844120448482 11.2932924154749 11.6216133255926 11.4951631215886 0.0809341238304186 0.0801932796993831 0.0787587477908433 0.0787587477908433 0.0797083989361303 0.0840959042321299 0.0813755693299669 0.0817988630987561 0.08555735806304 0.0787587477908433 0.0801364510395481 0.0794811507607525 0.0817260247406548 0.0851912237335968 0.080520556981739 0.0787587477908433 0.0867351241951636 0.0826697092890551 0.0787587477908433 3 3|0 +|/ 16833977 16834855 16834281.125 16827851 16835195 + gene protein_coding_gene FALSE TRUE AT3G45780.1|AT3G45780.2 PHOT1 (phototropin 1); kinase Blue-light photoreceptor. Contains a light activated serine-threonine kinase domain and LOV1 and LOV2 repeats. Mutants are defective in blue-light response. Mediates blue light-induced growth enhancements. PHOT1 and PHOT2 mediate blue light-dependent activation of the plasma membrane H+-ATPase in guard cell protoplasts. Identical to Phototropin-1 (EC 2.7.11.1) (Non-phototropic hypocotyl protein 1) (Root phototropism protein 1) (PHOT1) [Arabidopsis Thaliana] (GB:O48963); similar to PHOT2 (NON PHOTOTROPIC HYPOCOTYL 1-LIKE), kinase [Arabidopsis thaliana] (TAIR:AT5G58140.1); similar to phototropin 1 [Pisum sativum] (GB:AAM15725.1); similar to phototropin [Phaseolus vulgaris] (GB:BAD89967.1); similar to phototropin-like protein PsPK4 [Pisum sativum] (GB:AAB41023.2); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain PAC motif; (InterPro:IPR001610); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain PAS-associated, C-terminal; (InterPro:IPR000700); contains InterPro domain PAS fold-3; (InterPro:IPR013655); contains InterPro domain PAS fold; (InterPro:IPR013767) 0.148919079417007 1.64248978461156 0.137315730991235 1 1.98769460369044 22.8399708079471 0.148919079417007 0.087452168345872
AT3G59770_at 7.75987571062202 8.05757963616983 7.8479138046366 7.76997572602548 7.91299331815732 7.32641444138278 7.65726524494543 7.7407992717539 7.13341713079491 7.32495594494672 7.24131150959919 7.24006955102652 7.03590174298145 6.90944194180158 7.09511611392256 7.42184114997537 6.29578435907555 6.6315277668097 7.25441440778991 0.190015833179707 0.189232598230715 0.191898052854197 0.191864259879452 0.187338350802636 0.202267059389371 0.189336909192732 0.186047655704678 0.19141654099627 0.182158110627494 0.18575210389166 0.182084211053185 0.199899512186567 0.202828876213527 0.185175575890454 0.181616194620292 0.200623143356330 0.190511925615276 0.197683072665118 3 3 - 22090258 22090963 22090648.091 22090010 22097126 - gene protein_coding_gene FALSE TRUE AT3G59770.1|AT3G59770.2 SAC9 (suppressor of actin 9) Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT1G17340.1); similar to putative SAC domain protein 9 [Oryza sativa (japonica cultivar-group)] (GB:BAD52604.1); similar to WW/Rsp5/WWP; Synaptojanin, N-terminal; Galactose-binding like [Medicago truncatula] (GB:ABE83905.1); similar to WW/Rsp5/WWP; Synaptojanin, N-terminal; Galactose-binding like [Medicago truncatula] (GB:ABE89873.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.171638602133554 -1.64131349100498 0.137562005766956 1 1.98618993444615 14.8698371915831 -0.171638602133554 0.115539707984471
AT2G45530_at 7.10264356099403 7.33528072839106 7.42664727516889 7.41584629818077 7.92674503269424 7.93932553887453 7.66864451733968 7.65714015776251 8.0601368910474 7.90351439467146 7.63974297540066 7.42318125250635 7.41468031302576 7.8015170712578 6.93898817343061 7.81738168521845 7.8526945131626 7.1240127188029 7.96864603822045 0.171323954285516 0.165796373348898 0.170067309830413 0.168347636780931 0.167777459377535 0.171452647618534 0.168934811049381 0.17075048294557 0.174238455069404 0.172521806415776 0.172036244747524 0.167558822344933 0.178133433743462 0.176242832328546 0.167754965181018 0.165796373348898 0.177898695228269 0.17631227951846 0.167323562482578 2 2 + 18763870 18764369 18764101.909 18763552 18764587 + gene protein_coding_gene FALSE TRUE AT2G45530.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G05830.1); similar to Zinc finger, C3HC4 type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54306.2); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.119846904177337 -1.63760257242928 0.138341587262699 1 1.98144643328649 15.2985127782576 -0.119846904177337 0.0404101472440466
AT3G25840_at 7.28419952571716 6.97409921316686 7.60585445214505 7.27914769833685 8.08327394723405 7.27766552588291 7.2535588185995 6.97212827757105 6.88415180357056 7.50225385691034 7.34440815304373 7.55077966634125 7.45224839816578 7.42816324031867 7.08088928924119 7.92122130011848 7.13948229769126 7.30998017992808 7.83224940423196 0.173326736055616 0.168621778484482 0.164461229839565 0.172803746147477 0.169255538466033 0.164461229839565 0.171753619490963 0.186335586728139 0.186131607975542 0.167957269881558 0.178088927563427 0.164461229839565 0.170113237744842 0.169236874946624 0.166751454746784 0.168266333882604 0.187465243659454 0.171506503634927 0.167013341634369 3 3|0 -|/ 9454260 9455215 9454585.8 9453900 9458791 - gene protein_coding_gene FALSE TRUE AT3G25840.1|AT3G25840.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53640.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13350.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99626.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G53640.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G13350.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99626.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.218833578918920 1.63756592491324 0.138349306154986 1 1.98139961392461 14.7460483925868 0.218833578918920 0.166987222138058
AT2G20790_at 6.13887861322821 5.8463779370639 6.19220820581788 5.76258426744454 5.57929661934772 5.5778674608634 5.31038671304958 5.3289969692159 5.46112074398218 5.46517092152603 5.68899203330084 5.78397413974377 5.70081012577279 5.78534816298894 5.76162884206921 5.9442000586225 5.75397005129519 5.50596273188828 5.75901201200987 0.187446908675152 0.187446908675152 0.1878812914876 0.190470669857274 0.188597348951484 0.210583277964425 0.200387963107139 0.197042956622255 0.194103719412990 0.197707629963723 0.192330331240567 0.191246672827454 0.207074053732405 0.197232570578529 0.190414891776430 0.189136789945693 0.209727207387133 0.197845560482080 0.191960273885658 2 2|0 -|/ 8957422 8958067 8957765.3 8957009 8959825 - gene protein_coding_gene FALSE TRUE AT2G20790.1|AT2G20790.2|AT2G20790.3 similar to Adaptor complexes medium subunit family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99308.2); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) 0.150335977966576 1.63680287212612 0.138510113630594 1 1.98042488262264 11.368263928612 0.150335977966576 0.0900020285976274
AT4G13550_at 7.7270477374898 8.15954783220901 7.77615339772476 8.10583306811519 8.62897132892022 7.45015028753791 8.89654112516137 8.84221753699202 8.06057057463675 8.25729061771981 8.03027027165761 7.92525678689848 7.81849792611554 8.10862066031638 7.45915450055897 8.62452847888474 7.55276657360739 7.61611840506128 7.76885638399242 0.217094412335396 0.213685383107113 0.228853431286349 0.231544859392701 0.213680130409569 0.241245752378126 0.214888888880922 0.229116428090511 0.234133021767279 0.234662116218725 0.21678349197059 0.215834869800848 0.222879144023777 0.232019454240805 0.236665331309776 0.213680130409569 0.237788707008044 0.243412725063123 0.223919017505046 4 4 - 7871614 7872964 7872504.4 7871053 7876873 - gene protein_coding_gene FALSE TRUE AT4G13550.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT5G18640.1); similar to Os04g0509100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053276.1); similar to Predicted lipase (ISS) [Ostreococcus tauri] (GB:CAL50026.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) -0.276532847891986 -1.63353659283250 0.139200385332497 1 1.9762549594463 16.1587115688541 -0.276532847891986 0.224858890031375
AT2G17560_at 8.02624825262997 8.25412648910269 7.86880501836465 7.69999538987538 8.59614809990643 8.06544095487264 8.64258001496478 8.20265784254095 7.36787868367346 6.57963428964006 7.63939816133797 7.8968215316695 7.66227540614717 7.94587413730453 7.43421540216538 7.44816908124468 6.84964380394275 7.13995956356694 6.79136376315607 0.191221536890779 0.185736540947859 0.194030002362264 0.190164072646362 0.190203357488542 0.184829405709069 0.195261910324662 0.187652471698319 0.203084742255788 0.209184142097870 0.185876017517377 0.185883853567953 0.192791891198676 0.185688156673044 0.194627046575475 0.186263880814032 0.198594971971781 0.189240845952826 0.192753552686650 2 2|0 -|/ 7649709 7650522 7650157.25 7649247 7650749 - gene protein_coding_gene FALSE TRUE AT2G17560.1|AT2G17560.2|AT2G17560.3 HMGB4 (HIGH MOBILITY GROUP B 4); transcription factor|HMGB4 (HIGH MOBILITY GROUP B 4) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. similar to HMGB5 (HIGH MOBILITY GROUP B 5), transcription factor [Arabidopsis thaliana] (TAIR:AT4G35570.1); similar to high mobility group protein [Cucumis sativus] (GB:AAY26151.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.182639969855505 1.63342231449893 0.139224592779678 1 1.97610913723573 15.3770020318216 0.182639969855505 0.128993276315097
AT2G22010_at 5.74675366835228 6.0360317423346 6.04623563810677 5.86754439601829 6.52988392423759 5.55877715215575 6.26396899101745 5.91261198393611 4.85785362322435 4.73277326572219 5.25378979460321 5.42904592004009 5.64180276050088 5.49758953321999 4.94119869310795 5.54513160652995 5.4756817577155 4.73717453412105 4.95235104027571 0.2284942612063 0.226514648432806 0.233488717276459 0.227176681821981 0.229026025271527 0.244709790112104 0.230225800031473 0.226514648432806 0.229813276683564 0.231580185523200 0.228342925082215 0.229274115053129 0.226597226064941 0.229730399653203 0.227967110142542 0.231412717079582 0.234001343683215 0.229347677642728 0.234971053627369 2 2 - 9371131 9373819 9372579.65 9370801 9376387 - gene protein_coding_gene FALSE TRUE AT2G22010.1 zinc finger (C3HC4-type RING finger) family protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79709.1); similar to Zinc finger, RING-type; SPla/RYanodine receptor SPRY [Medicago truncatula] (GB:ABE89403.1); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.239143098229286 1.63330763733895 0.139248888567838 1 1.97596281102626 11.0766440043801 0.239143098229286 0.188153676128977
AT1G51805_at 11.4094164486683 11.5352188265578 11.4376403404191 11.3539853631818 11.5009679406588 11.2777507652456 11.7328549465166 11.6353800678048 12.0189000556641 11.9140095133344 12.0196521957021 11.8806560947350 11.8922410343340 12.0642718969663 11.2766049586031 11.9970663222488 11.5989973776622 11.6991274925700 11.6629497991521 0.0676187694174435 0.0674066664010328 0.0679042889419575 0.0695019426930397 0.0679477100375337 0.0716370194496188 0.0678076007470679 0.0719691554763294 0.080822574293658 0.0705092793796761 0.0675206379688785 0.0674066664010328 0.0674945969579121 0.0687731448442613 0.0702962489434346 0.0674066664010328 0.0725916353039412 0.0735290738298153 0.0675913777137613 1 1 - 19224862 19225537 19225089.909 19224646 19229358 - gene protein_coding_gene FALSE TRUE AT1G51805.1 leucine-rich repeat protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G21340.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51850.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G51820.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90329.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90342.1); similar to leaf senescence-associated receptor-like protein kinase [Phaseolus vulgaris] (GB:AAG00510.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.123670377229040 -1.63092594910841 0.139754353408975 1 1.97292492932250 23.3198336512080 -0.123670377229040 0.049601117471641
AT1G09840_at 7.53670133023211 7.4045683573635 7.30441865437559 7.2534253634518 7.54819536578076 7.09202125101084 7.49790523405466 7.69801750095277 7.0394956838256 7.0883021030321 8.02704274137633 7.49589430866236 7.47584195322152 7.58328372778503 7.9077273286323 7.77449295345283 7.50457530083856 7.57477999729908 7.27469653632198 0.162860047372755 0.164868575884982 0.161301986418662 0.163470270819369 0.164139680355265 0.162682493883228 0.166635343305485 0.158325145338084 0.176551047657709 0.164370789327133 0.165793192041720 0.160517489445720 0.168223548914566 0.167647382156801 0.160499491695101 0.158588687799116 0.17332370812376 0.167577716416125 0.166459063225839 1 1|0 -|/ 3196122 3197852 3196956.7 3195826 3200293 - gene protein_coding_gene FALSE TRUE AT1G09840.1|AT1G09840.2|AT1G09840.3|AT1G09840.4|AT1G09840.5|AT1G09840.6 shaggy-related protein kinase kappa / ASK-kappa (ASK10)|protein kinase Identical to Shaggy-related protein kinase kappa (EC 2.7.11.1) (ASK-kappa) (AtK-1) (ASK10) [Arabidopsis Thaliana] (GB:Q39019;GB:O04506;GB:Q96244); similar to shaggy-related protein kinase kappa, putative / ASK-kappa, putative [Arabidopsis thaliana] (TAIR:AT1G57870.1); similar to Protein kinase [Medicago truncatula] (GB:ABE91930.1); similar to GSK-3-like protein MsK4 [Medicago sativa] (GB:AAN63591.1); similar to putative salt-inducible protein kinase [Zea mays] (GB:AAU43771.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.149503533759627 1.63088939472019 0.139762124346625 1 1.97287832019495 14.8179664138036 0.149503533759627 0.0896214634465674
AT4G04610_at 9.9928008730815 10.5558797044304 10.1726228599789 10.3336663053338 10.3366466395375 9.88044526350817 11.1260252211409 11.1926252354554 9.04510772393527 10.6082741200673 10.2157190822733 9.67233058088488 10.0483730462690 10.2741744855759 8.95220426349482 9.85469993690677 10.2837267228934 10.0933282969888 9.60560893717895 0.112771413757453 0.111010147974004 0.120161059977471 0.112767016149608 0.111794098684220 0.115597064961948 0.112390094594744 0.112363562650582 0.122641387525005 0.110678666120468 0.111282736729006 0.114202425823663 0.112810326374315 0.114500658126756 0.122904976999434 0.110180423875001 0.110365135407415 0.112642501032096 0.120253963598395 4 4 + 2326149 2326675 2326429.727 2325001 2327011 + gene protein_coding_gene FALSE TRUE AT4G04610.1 APR1 (PAPS REDUCTASE HOMOLOG 19) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. Identical to 5'-adenylylsulfate reductase 1, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 1) (APS sulfotransferase 1) (Thioredoxin-independent APS reductase 1) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 19) (PAPS reductase homolog 19) (Prh-19) (APR1) [Arabidopsis Thaliana] (GB:P92979;GB:O48886;GB:Q39248); similar to APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT1G62180.1); similar to APR3 (APS REDUCTASE 3) [Arabidopsis thaliana] (TAIR:AT4G21990.1); similar to APS reductase [Brassica juncea] (GB:CAA04611.1); similar to adenosine 5'-phosphosulfate reductase [Glycine max] (GB:AAL66290.1); similar to 3'-phosphoadenosine 5'-phosphosulfate reductase (GB:AAC49573.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-independent 5' (InterPro:IPR004508) -0.182332433293543 -1.63072654152873 0.139796749379825 1 1.97267067830603 20.287497252294 -0.182332433293543 0.128986455790622
AT2G20960_at 9.10041446715791 9.30174215509125 9.21359089576898 9.42006238519103 9.5921905062625 9.4487651152577 8.86632772780836 8.96801500553107 9.18764867578772 8.88829520716256 8.98997693601388 8.9111002420241 9.02228220263601 8.93972086989309 8.84551015752318 8.96075013171149 8.88939843527824 8.95453414367317 9.04948791085042 0.114578203836583 0.107698120735900 0.112503127861356 0.107917545906911 0.111549264557749 0.120021933026550 0.110875684334021 0.109259098888493 0.112520243364435 0.112854276264765 0.111794153202907 0.113752996464283 0.115879141365047 0.112693236153450 0.113109411211093 0.112531790475517 0.116214981960783 0.110877607954921 0.113083535674277 2 2 + 9016101 9016638 9016290.727 9013729 9016844 + gene protein_coding_gene FALSE TRUE AT2G20960.1 pEARLI4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38560.1); similar to pEARLI 4 gene product (GB:AAC37472.1); contains InterPro domain Arabidopsis phospholipase-like; (InterPro:IPR007942) 0.128437964316741 1.63047712272406 0.139849794715522 1 1.97235268241393 18.2293734011475 0.128437964316741 0.0584490581204674
AT1G27480_at 8.3469307487211 8.5032334502618 7.97486261980507 8.01320150082496 8.40485198887463 8.61091266417573 8.97036977398465 8.91168723932321 8.30510506885402 8.63581456009164 8.64464706912458 8.57100444754413 8.6297813634576 8.52187125910743 8.84839337990836 8.87266135184324 8.82189983957177 8.56531247634948 8.5482354938995 0.137184469258276 0.135290092048479 0.146038551539106 0.135083887801128 0.137936509678548 0.141089848600039 0.139504823981957 0.138170467542017 0.141740054274880 0.133614713994413 0.140809524061246 0.136083048008695 0.130817230281724 0.139877315703131 0.140220542667688 0.13252374272795 0.13770005660537 0.135144750818577 0.141232612075691 1 1 + 9545606 9546045 9545765.818 9544501 9546272 + gene protein_coding_gene FALSE TRUE AT1G27480.1 lecithin:cholesterol acyltransferase family protein / LACT family protein similar to lecithine cholesterol acyltransferase-like protein [Medicago truncatula] (GB:AAQ10316.1); contains InterPro domain CUB; (InterPro:IPR000859); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Lecithin:cholesterol acyltransferase; (InterPro:IPR003386) -0.122018376118826 -1.63019433528208 0.139909958936344 1 1.97199217154121 17.0574219679022 -0.122018376118826 0.0463725299767873
AT2G38290_at 6.76043584524338 6.71066294356546 6.51326440266094 6.15691283812906 4.53747251526779 5.78447491046527 3.81559894827934 3.8930545235836 5.56805705080312 4.88038082000442 5.06720919207966 5.49412168764664 5.03535798088182 5.16311166347562 4.77262454450685 5.7229082092875 5.38113510332625 5.0348359501474 4.88168344036719 0.240174938465163 0.237980461575997 0.232375530217998 0.227045545580349 0.239798060142672 0.230215436869096 0.235294324098030 0.232730203262231 0.232791206717106 0.226035142582414 0.227475334771242 0.231372677687635 0.227831015816253 0.238653390892846 0.235527684106038 0.227901696567025 0.251866846092167 0.233342558214746 0.227542131605917 2 2|0 -|/ 16046775 16047606 16047103.889 16046553 16049461 - gene protein_coding_gene FALSE TRUE AT2G38290.1|AT2G38290.2 ATAMT2 (AMMONIUM TRANSPORTER 2); ammonium transporter|ATAMT2 (AMMONIUM TRANSPORTER 2) encodes a high-affinity ammonium transporter, which is expressed in shoot and root. Expression in root and shoot is under nitrogen and carbon dioxide regulation, respectively. Identical to Ammonium transporter 2 (AtAMT2) (AMT2) [Arabidopsis Thaliana] (GB:Q9M6N7); similar to ATAMT1,2 (AMMONIUM TRANSPORTER 1,2), ammonium transporter [Arabidopsis thaliana] (TAIR:AT1G64780.1); similar to putative ammonium transporter AMT2 [Lotus japonicus] (GB:AAL08212.1); similar to ammonium transporter [Medicago truncatula] (GB:ABE91133.1); similar to amt2-like protein [Medicago truncatula] (GB:AAN06953.1); contains InterPro domain Blood group Rhesus C/E and D polypeptide; (InterPro:IPR002229); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905)|Identical to Ammonium transporter 2 (AtAMT2) (AMT2) [Arabidopsis Thaliana] (GB:Q9M6N7); similar to ATAMT1,2 (AMMONIUM TRANSPORTER 1,2), ammonium transporter [Arabidopsis thaliana] (TAIR:AT1G64780.1); similar to ammonium transporter [Medicago truncatula] (GB:ABE91133.1); contains InterPro domain Blood group Rhesus C/E and D polypeptide; (InterPro:IPR002229); contains InterPro domain Rh-like protein/ammonium transporter; (InterPro:IPR010256); contains InterPro domain Ammonium transporter; (InterPro:IPR001905) 0.275982852911773 1.62941087826275 0.140076765914220 1 1.97099354036225 10.6809613551380 0.275982852911773 0.225002884062458
AT1G52310_at 6.978972020139 6.73613829123581 6.41114083272222 6.38088210262047 6.98876228612497 6.71727161917095 6.84638695981152 6.51186482443529 6.35205716679608 6.05713201751842 6.12837581918762 6.43045985205528 5.87649399439086 6.13058706875905 6.12601990350624 5.91310721304523 5.90673816608733 5.98744567708022 6.22493164153166 0.190234217412987 0.181966333550678 0.194760623467059 0.189381692064879 0.185640844133722 0.182454162391228 0.181231693259959 0.185070276533161 0.187690934638038 0.179556000453482 0.191979847093429 0.180679762499005 0.194406739619729 0.186535375807413 0.186220380371550 0.184105823692742 0.179723842137051 0.183375651027959 0.183384832236922 1 1|0 +|/ 19483505 19484092 19483821.1 19481793 19484279 + gene protein_coding_gene FALSE TRUE AT1G52310.1 protein kinase family protein / C-type lectin domain-containing protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G49760.1); similar to Os01g0104000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041761.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD44833.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain C-type lectin; (InterPro:IPR001304); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266) -0.146398230298579 -1.62870108092820 0.140228046308309 1 1.97008899873291 12.8333159022222 -0.146398230298579 0.0857443601964658
AT1G02410_at 7.87704380154247 8.20410899396405 7.85999892082344 8.09123167251082 8.05608226449015 7.92027201968578 8.15173035978499 8.02861778435889 7.28931273719519 7.35573197661641 7.62089039217438 7.82543345278633 7.32302450476464 8.05648108424521 7.59106590520023 7.75556884533159 7.70222063619987 7.54427533880343 7.30047340572992 0.192233668628993 0.182826519089864 0.187662197698684 0.184671592335416 0.180039604160362 0.181963783067495 0.186071677492704 0.191861878045542 0.191283664788205 0.185225925127516 0.184256015401664 0.188541530118917 0.194068930402895 0.186858389222344 0.194183723162626 0.181614648970523 0.185442632520222 0.198034131718864 0.188903356196897 1 1|0 +|/ 491678 492728 491917.571 490925 492912 + gene protein_coding_gene FALSE TRUE AT1G02410.1 cytochrome c oxidase assembly protein CtaG / Cox11 family similar to Os03g0718600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051089.1); similar to Cytochrome c oxidase assembly protein CtaG / Cox11, putative [Medicago truncatula] (GB:ABE90151.1); contains InterPro domain Cytochrome c oxidase assembly protein CtaG/Cox11; (InterPro:IPR007533) 0.139359148944657 1.62599099080921 0.140807022457258 1 1.96663709922507 15.5199070903711 0.139359148944657 0.0762307963392536
AT4G18740_at 5.34672803609095 6.18374948396307 5.94979989120691 5.83298952177647 7.21436686267352 6.5396546912427 8.34200503053325 7.61383758600585 6.71588874892633 7.31221965481704 8.7806538185395 7.42063080349451 7.5140547294859 7.4745720301885 6.04742043695494 7.37649925871035 6.30849194445946 6.37082235636564 7.65057139494324 0.298846200167785 0.296605422493046 0.308498218209367 0.296605422493046 0.301904766347636 0.326703180571233 0.296722822638926 0.308697594059225 0.334420924932346 0.305365364116964 0.303055188835003 0.296605422493046 0.302742314628191 0.316539989909801 0.303534583264794 0.298778180943441 0.335850637707164 0.323610989528495 0.305440655737513 4 4 - 10303554 10304164 10303891 10303425 10304583 - gene protein_coding_gene FALSE TRUE AT4G18740.1|AT4G18740.2 transcription termination factor| contains InterPro domain Rho termination factor, N-terminal; (InterPro:IPR011112)|contains domain Rho termination factor, N-terminal domain (SSF68912) -0.275980359855367 -1.62566828479407 0.140876109308768 1 1.96622624652551 13.8218262738551 -0.275980359855367 0.225616689272928
AT3G19670_at 6.31059504843646 5.97598088826808 6.03475302495662 5.94632911580628 6.49892857556196 6.18168222203161 6.05910585605747 5.73678348706304 5.99030400912478 6.43095947154305 6.46147714474464 5.93740151742906 5.80703837900145 5.2398113118178 5.28639374869953 6.19142539166807 6.26609386918487 5.84406615316605 6.58542089536003 0.250864160934144 0.242405193572267 0.242208649751219 0.242356233641043 0.249759062668443 0.251735766861909 0.248250830310724 0.244673997821773 0.248502363731305 0.246293644456477 0.239906957727902 0.239906957727902 0.252052755390800 0.248080859230894 0.245333427262331 0.239906957727902 0.242112401509465 0.239906957727902 0.251279756051004 3 3|0 -|/ 6828336 6830059 6829277 6828068 6836588 - gene protein_coding_gene FALSE TRUE AT3G19670.1 FF domain-containing protein / WW domain-containing protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G44910.1); similar to Os01g0532200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043246.1); similar to PREDICTED: similar to Formin-binding protein 3 (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas-ligand associated factor 1) (NY-REN-6 antigen) isoform 5 [Canis familiaris] (GB:XP_858026.1); similar to PREDICTED: similar to Pre-mRNA-processing factor 40 homolog A (Formin-binding protein 3) (Huntingtin yeast partner A) (Huntingtin-interacting protein HYPA/FBP11) (Fas ligand-associated factor 1) (NY-REN-6 antigen) isoform 1 [Homo sapiens] (GB:XP_371575.4); contains InterPro domain FF; (InterPro:IPR002713); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.155770552289584 -1.62368345518066 0.141301712594436 1 1.96370013043142 12.2004072263426 -0.155770552289584 0.0985534356456905
AT4G01210_at 8.21203405402551 8.20169657149603 8.07057807516106 8.08247185655953 8.29926594544561 8.24970525687694 8.23677455159577 7.98462511939447 8.23517012803426 8.61022250048584 8.49262565057293 8.28623584522345 8.13098744274647 7.91031069702114 8.05877297298887 8.2106224063732 8.14804183794464 8.11738189406033 8.43659788308086 0.127610410658310 0.118722361954223 0.125563387867898 0.118722361954223 0.123381237199633 0.119164144642705 0.120285184507643 0.124486417246705 0.124467919286671 0.120557359568967 0.12983055927398 0.119908124183367 0.118722361954223 0.125318276115912 0.123916515215627 0.118722361954223 0.123406527453021 0.123499524074970 0.126509365413978 4 4 - 507778 508748 508156.091 507738 512782 - gene protein_coding_gene FALSE TRUE AT4G01210.1 glycosyltransferase family protein 1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04480.1); similar to Os10g0546200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065214.1); similar to Os01g0622000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043608.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.120617558892214 -1.62292483422801 0.141464691133381 1 1.96273501904349 16.4654951857694 -0.120617558892214 0.0445540729907848
AT4G39150_at 9.0574896648664 8.8448706891686 9.08821128645246 9.06974032820277 9.55008886705355 8.70346806989706 10.0143700676069 9.73048916452998 9.21774359389223 9.4131893889808 9.4796129081404 9.31339854041862 9.2584540395335 9.32994936344892 9.17242312891496 9.2201544145677 8.53203543863868 9.15789145973744 9.24572985803115 0.123876218485787 0.127452206999346 0.122853080768991 0.128237128099742 0.123453646092987 0.145553411319316 0.124128960895942 0.126622076225049 0.137129037451597 0.119702482666461 0.121931405886463 0.121636813596032 0.121898387589815 0.130101785952817 0.124056532239034 0.123676796710075 0.137830293348195 0.131631509204452 0.127093257961662 4 4|0 -|/ 18233649 18234604 18234168 18233479 18236058 - gene protein_coding_gene FALSE TRUE AT4G39150.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G21510.1); similar to Os08g0522600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062282.1); similar to Os05g0543700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056206.1); similar to putative dnaJ-like protein [Oryza sativa subsp. indica] (GB:AAD27555.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.209079396967269 -1.62277521932383 0.141496853879260 1 1.96254470597059 18.4949464465438 -0.209079396967269 0.158881066170609
AT2G22310_at 6.5337487902444 6.84200271642189 6.3145034057964 6.81079271857237 7.2133860575861 6.7002301265392 6.68644898264232 6.5780847908398 6.78359631566175 6.70200776989503 6.71457016911008 6.414392359053 6.30585100786793 6.69944173395887 5.5056063717641 6.19453115058977 6.44596029500079 6.11235622218868 6.83612721095772 0.221348420105344 0.220640023828376 0.225671064663577 0.227912259938399 0.22603236820674 0.243396708831673 0.225385213255892 0.228163533208922 0.22948633761586 0.221225663574981 0.219092398620309 0.219092398620309 0.220270251719917 0.220777351351120 0.224535015810867 0.219092398620309 0.232105237501373 0.228424311628206 0.219330481221766 2 2 - 9483878 9484404 9484088.455 9483658 9486039 - gene protein_coding_gene FALSE TRUE AT2G22310.1 ATUBP4 (UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease Encodes a ubiquitin-specific protease. Identical to Ubiquitin carboxyl-terminal hydrolase 4 (EC 3.1.2.15) (Ubiquitin thioesterase 4) (Ubiquitin-specific-processing protease 4) (Deubiquitinating enzyme 4) (AtUBP4) (UBP4) [Arabidopsis Thaliana] (GB:Q8LAM0;GB:O24455); similar to ATUBP3 (UBIQUITIN-SPECIFIC PROTEASE 3), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT4G39910.1); similar to Os04g0452400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052951.1); similar to ubiquitin specific protease 46 [Mus musculus] (GB:NP_808229.1); similar to PREDICTED: similar to ubiquitin specific protease 46 [Rattus norve (GB:XP_214034.4); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.18758250569672 -1.62231851584055 0.141595072675742 1 1.96196382282482 13.2463992465119 -0.18758250569672 0.135866689268328
AT3G52090_at 9.0779493928355 9.00320983153425 9.02745025165721 8.99224959766428 9.20823276784755 8.89512507903516 9.38868201158186 9.0277498660988 8.93542929553165 8.82936318796657 9.10396613518794 9.41942249389276 9.00965192615731 9.12766299847117 9.54330756389267 9.28470399281236 8.98333682911428 9.17055035170749 8.7033868688227 0.0958657569983555 0.095286546614892 0.0942889626748672 0.0917947599562754 0.0965154148814592 0.098466961822344 0.094823524637802 0.104488002761067 0.103161144968293 0.0956237871211046 0.0951711716740737 0.0925946580069139 0.0957333932809602 0.0946811721243673 0.0979029933114894 0.0921630027713385 0.0969206631416756 0.0960618737422187 0.0961771713510927 3 3|0 -|/ 19329052 19329938 19329511.5 19328832 19330058 - gene protein_coding_gene FALSE TRUE AT3G52090.1 ATRPB13.6 (Arabidopsis thaliana RNA polymerase II 13.6 kDa subunit); DNA binding / DNA-directed RNA polymerase RNA polymerase II 13.6 kDa subunit (AtRPB13.6) mRNA, Identical to DNA-directed RNA polymerase II subunit J (EC 2.7.7.6) (DNA-directed RNA polymerase II 13.6 kDa polypeptide) (RPB13.6) [Arabidopsis Thaliana] (GB:Q38859); similar to ATRPC14 (Arabidopsis thaliana RNA polymerase I(A) and III(C) 14 kDa subunit), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT2G29540.2); similar to Os07g0172500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058998.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF90169.1); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain DNA-directed RNA polymerase, 13 to 16 kDa subunit; (InterPro:IPR008193); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261) 0.144482742084648 1.62229706317043 0.141599687818769 1 1.96193653902884 18.0916069683709 0.144482742084648 0.0839151908608064
AT3G24350_at 7.51588007011952 7.93528372063829 7.12061391002281 7.60973005913836 7.574901910178 7.51130108909772 7.35949308014283 7.6653996159347 6.56363121199593 6.45899973379567 7.2141377872036 7.30636501927358 6.56160068515481 7.05828150345197 7.58573067127803 6.37412431456777 6.31731751432048 6.74500403591415 6.10747150145215 0.261001404410597 0.261483498656200 0.275571903458909 0.267121458855245 0.261701419203625 0.274261057545611 0.261001404410597 0.268663732644765 0.284889412672279 0.261001404410597 0.263434836275559 0.261001404410597 0.268818500798471 0.270826108073891 0.261001404410597 0.261193064881370 0.277050398823321 0.272322069207241 0.261001404410597 3 3|0 +|/ 8838586 8839373 8838920.8 8837653 8839589 + gene protein_coding_gene FALSE TRUE AT3G24350.1 SYP32 (syntaxin 32); t-SNARE member of Glycoside Hydrolase Family 17 Identical to Syntaxin-32 (AtSYP32) (SYP32) [Arabidopsis Thaliana] (GB:Q9LK09); similar to SYP31 (T-SNARE SED 5), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G05760.1); similar to Os01g0179200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042197.1); similar to PREDICTED: similar to Syntaxin 5A [Strongylocentrotus purpuratus] (GB:XP_784377.2); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.176870998024009 1.62196550252955 0.141671034330243 1 1.96151487796187 14.1725859354808 0.176870998024009 0.123919453410420
ATCG00300_at 11.6842662902433 12.3132584747859 12.4774764093715 12.3073274149842 12.3694076142467 12.1057768985453 12.3875286105914 12.6806271961749 13.1974212275817 13.3500885560227 13.8559016216205 13.899307646288 13.6716001378831 13.4619317063084 13.4337037546855 13.6884105683878 13.2080618118176 13.3221806437419 13.1982052304164 0.115774438773304 0.101166279777433 0.105553664495443 0.104480949363123 0.102391161982723 0.105397194805907 0.106785773751231 0.103934922837572 0.108608775186168 0.103458989183676 0.103640974479913 0.103484023089605 0.101166279777433 0.111862092326984 0.105068398726988 0.103546750588221 0.115609672832860 0.114358011174156 0.101166279777433 C C + 35751 35915 35832.091 35751 35939 + gene protein_coding_gene FALSE TRUE ATCG00300.1 encodes PsbZ, which is a subunit of photosystem II. In Chlamydomonas, this protein has been shown to be essential in the interaction between PS II and the light harvesting complex II. Identical to Photosystem II reaction center protein Z (PSII-Z) (psbZ) [Arabidopsis Thaliana] (GB:P56790); similar to Photosystem II reaction center protein Z (PSII-Z) (GB:Q32902); contains InterPro domain Photosystem II protein PsbZ; (InterPro:IPR002644) 0.183821253169689 1.62158945065270 0.141751994220442 1 1.96103668590236 25.6988130674588 0.183821253169689 0.131793344702749
AT3G15690_at 8.27956202410093 8.28264980754052 7.94537650799 7.80083301560822 8.57736534838955 8.44361347441096 8.94886236558687 8.58157750946704 8.41686574751198 8.29440975729615 8.68381730563315 8.40671582816082 8.31038964491615 8.57181198450567 8.58257124107262 8.5227378357368 7.99863179332482 8.39531681241191 8.41367253185037 0.133837493372364 0.126261424845157 0.140993870978395 0.130009514075275 0.123765406981498 0.127237766151977 0.127939658700337 0.124642792703803 0.132193354338853 0.131330483935852 0.123765406981498 0.126506700483147 0.128069614921423 0.123765406981498 0.131319896060374 0.123765406981498 0.142052262300744 0.133539024346878 0.132694181070057 3 3|0 +|/ 5318175 5319383 5318749.8 5316923 5319620 + gene protein_coding_gene FALSE TRUE AT3G15690.1|AT3G15690.2 biotin carboxyl carrier protein of acetyl-CoA carboxylase-related similar to biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52670.1); similar to Biotin/lipoyl attachment [Medicago truncatula] (GB:ABD28385.1); contains InterPro domain Single hybrid motif; (InterPro:IPR011053)|similar to biotin/lipoyl attachment domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52670.1); similar to Biotin/lipoyl attachment [Medicago truncatula] (GB:ABD28385.1); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.136174731620039 -1.62118840441226 0.141838381501127 1 1.96052676997799 16.7619708739400 -0.136174731620039 0.0721225082005428
AT4G03110_at 7.39231487337225 6.97691166379194 7.1197452930879 6.69431135586626 7.8052598627477 7.38994857555111 8.45962820683963 8.1145518741895 9.10951394997863 8.29580353479178 9.45615816950401 8.78949863250781 9.0550359010714 9.34533620419492 8.45124943056902 8.47761504395733 7.99447060077258 8.76329212777131 8.66043207492261 0.181541367001588 0.183879111545921 0.196137549888669 0.200996556938319 0.180368079310637 0.191768519571947 0.17742030819014 0.178258594851439 0.183333660796487 0.188692545701130 0.181184245177517 0.178480319819428 0.176589144076711 0.181498528155528 0.175825150215793 0.178632809157493 0.182205484573689 0.181648157351052 0.177584550706283 4 4 - 1376623 1377286 1377080.727 1376306 1379420 - gene protein_coding_gene FALSE TRUE AT4G03110.1|AT4G03110.2 RNA-binding protein, putative similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G03457.1); similar to Os01g0938200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045340.1); similar to Os05g0373400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055367.1); similar to 'unknown protein, contains RNA recognition motif,PF00076' [Oryza sativa (japonica cultivar-group)] (GB:AAT58838.1); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.190268277752938 -1.62090373520497 0.141899729669316 1 1.96016486042010 16.2341665633597 -0.190268277752938 0.138995864410556
AT2G21950_at 7.23183315662485 7.63998044332965 7.7173654328252 7.5124708030709 8.24541250693313 7.87047987784771 7.43426388383517 7.47611787913558 7.57905731165802 7.30138554284286 7.68637916467305 7.15144469198857 7.9715349651324 7.6736416268329 7.05740062493304 7.71595071164086 7.17612026818054 7.19414251487978 7.70061121571525 0.165841794099296 0.162500329103202 0.161911360396368 0.166547418611609 0.167610465492804 0.171785333433040 0.165986174459461 0.174637240402875 0.170908656665633 0.166577499672863 0.177252071630343 0.166751128310892 0.165840609260040 0.161432808604529 0.164867548157631 0.165626273106295 0.169821971844018 0.169829234634199 0.181973535893731 2 2 - 9360606 9361144 9360832.727 9360254 9361725 - gene protein_coding_gene FALSE TRUE AT2G21950.1 SKIP6 (SKP1 INTERACTING PARTNER 6); ubiquitin-protein ligase Encodes an SKP1 interacting partner (SKIP6). similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT4G39550.1); similar to Cyclin-like F-box; Serine/threonine protein phosphatase, BSU1 [Medicago truncatula] (GB:ABE89413.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.158596056032595 1.62011947174372 0.142068868686157 1 1.95916795945151 15.1311629201693 0.158596056032595 0.102510935361219
AT1G75510_at 8.21015293066242 8.15265998802425 8.24158975901823 8.16779853476597 8.1649066411202 7.8453318781235 7.89390101187573 7.724024310078 7.37847262271626 6.84136144162803 6.98186827448254 7.11944479306426 7.03426439186208 7.27774989085815 7.00204161025127 7.29015716618111 7.27319584905044 7.43355500316301 6.85109988884866 0.165289480110519 0.172025457094422 0.182289035484345 0.191073597949287 0.169427392782361 0.179278347035735 0.166653075818052 0.180321908834911 0.172475815383026 0.170133484383479 0.165347704257514 0.168168175703990 0.174318946614638 0.184881251993492 0.169414585980698 0.166591060811385 0.170601067071368 0.176244206719542 0.165224684823017 1 0|1 /|- 28351024 28351811 28351427.9 28350716 28352396 - gene protein_coding_gene FALSE TRUE AT1G75510.1 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein similar to ATP binding / RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G52270.1); similar to putative transcription initiation factor IIF beta subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD82068.1); contains InterPro domain Transcription Factor IIF, Rap30/Rap74, interaction; (InterPro:IPR011039); contains InterPro domain Transcription initiation factor IIF, beta subunit; (InterPro:IPR003196); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.131306057198335 1.61980100210947 0.142137604110269 1 1.95876320998371 15.1501352684227 0.131306057198335 0.0646902097089664
AT1G61140_at 8.59753566947416 8.7272196452135 9.0621282985187 9.1509472867549 8.8903589295025 8.40291307813852 8.14677301736408 7.93481134728205 8.00802964030733 8.50544329335933 8.44540858342569 8.1521776401559 7.98097510788937 8.13181663562846 7.62549301422008 8.62116254462204 8.37970873604259 8.01598497428888 8.64887479524113 0.165719131629477 0.158456105773621 0.162094791334549 0.157571971571952 0.158185192363917 0.164608810771793 0.163904293326022 0.164414368566661 0.165684459812669 0.166877944823819 0.161866975842283 0.163559822554815 0.159232658510346 0.166401794938456 0.15987962942852 0.159836788511622 0.166529522322314 0.158902897008114 0.158905848566790 1 1|0 -|/ 22538714 22539415 22539063.444 22538391 22544275 - gene protein_coding_gene FALSE TRUE AT1G61140.1 EDA16 (embryo sac development arrest 16); ATP binding / DNA binding / helicase/ protein binding / zinc ion binding similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G50410.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G11100.1); similar to SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G20010.1); similar to Os01g0779400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044433.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD52846.1); similar to H0323C08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68165.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.153321819980036 1.61974324979463 0.142150072053644 1 1.95868981554573 16.8923559827827 0.153321819980036 0.095922555419263
AT3G01280_at 10.2033137714896 10.3214972369027 10.5214838621282 10.5501589188046 10.2294714298042 10.0356916962211 10.4742303687301 10.4920404652078 9.57786320079428 9.84607470999147 9.8867877418721 10.0623196626249 9.85499345702916 9.76962192465992 10.1414230266758 9.86276808870489 10.0622215738958 9.93431426526908 9.5914863535629 0.108744046413296 0.113131966412837 0.112983503071222 0.119691849123984 0.112181987099252 0.11360114257792 0.111030341172797 0.114100506172481 0.118557230785990 0.112343977780455 0.113782818220278 0.111248348820373 0.116927980136581 0.118456175472566 0.111320895313620 0.113497904064215 0.118405492154810 0.111689056420196 0.113332876050708 3 3 + 86839 87586 87282.909 85608 87865 + gene protein_coding_gene FALSE TRUE AT3G01280.1 porin, putative Identical to Outer mitochondrial membrane protein porin 1 (Voltage-dependent anion- selective channel protein 1) (VDAC 1) [Arabidopsis Thaliana] (GB:Q9SRH5); similar to porin, putative / voltage-dependent anion-selective channel protein, putative [Arabidopsis thaliana] (TAIR:AT5G15090.1); similar to outer mitochondrial membrane protein porin 1 [Brassica napus] (GB:AAW22621.1); contains InterPro domain Porin, eukaryotic type; (InterPro:IPR001925) 0.118214572816116 1.61933492615598 0.142238251980059 1 1.95817093438073 20.1627931215149 0.118214572816116 0.0397111908670408
AT1G32990_at 10.2673704874448 10.2834664795914 9.64151998278928 9.4761133527813 10.2515921453894 9.98493476903049 10.6449422345882 10.5520929143416 10.3817149647571 10.7582224714330 10.9663860722659 11.2326356298184 10.6454783421905 10.8018658414501 11.4392372257393 10.9950359259633 10.3373068237740 10.9201094480177 10.5752531663885 0.0837848296840485 0.0847769654011753 0.0857976305358655 0.0869784959955544 0.0837132938600139 0.088232105109899 0.0817019615828367 0.0813344995171795 0.101687029855118 0.0870683562336918 0.087013767780605 0.0813344995171795 0.0846039313016345 0.083832107911764 0.0876010739660381 0.0827149963180108 0.0844706253103047 0.0813344995171795 0.0889165682056133 1 1 + 11955883 11957005 11956338.273 11955765 11957264 + gene protein_coding_gene FALSE TRUE AT1G32990.1 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Plastid Ribosomal Protein L11 Identical to 50S ribosomal protein L11, chloroplast precursor (CL11) (RPL11) [Arabidopsis Thaliana] (GB:Q9MAP3); similar to ribosomal protein L11 family protein [Arabidopsis thaliana] (TAIR:AT5G51610.1); similar to 50S ribosomal protein L11, chloroplast precursor (CL11) (GB:P31164); similar to Os03g0122200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048798.1); contains InterPro domain Ribosomal protein L11; (InterPro:IPR000911); contains InterPro domain Ribosomal protein L11, bacterial; (InterPro:IPR006519) -0.12645062685049 -1.61780758399452 0.142568531782855 1 1.95623061392449 20.8822476030005 -0.12645062685049 0.0566990007807639
AT1G64400_at 8.559572819176 8.54049101313046 8.18050839429256 8.20473208325182 8.91563365837408 8.5827966370778 8.8557866021682 8.90471549635845 9.10284591622552 9.24146542391124 9.97928017165371 9.57829219460522 9.658134303537 9.76064606917477 9.30403194848214 9.27675827304346 9.7641381663577 9.8931080884372 9.11379177412971 0.135632195097634 0.124878636136721 0.142721937094553 0.134619576738601 0.125329755486132 0.136605862217313 0.129674202088219 0.134713320301179 0.147738722197042 0.133226280238758 0.130686869122014 0.129923001225673 0.126412004796973 0.128284417779460 0.127657181311906 0.12682063720209 0.132093832951181 0.141981207687225 0.129719461084987 1 1|0 -|/ 23919683 23920343 23919993.7 23919261 23923446 - gene protein_coding_gene FALSE TRUE AT1G64400.1 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) [Arabidopsis thaliana] (TAIR:AT1G49430.1); similar to acyl-CoA synthetase [Brassica napus] (GB:CAA64327.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00145.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.127436912181687 1.61767436049809 0.142597373706214 1 1.9560614103617 17.9952794329788 0.127436912181687 0.0584621127178599
AT3G20510_at 7.72391542078679 7.50150313441532 7.33823173174969 7.35420424944439 5.9116437546333 5.78725285030947 6.12560729915038 6.29723317907665 6.18350755530443 4.90946853674212 6.23446792397855 6.75163034081842 5.18027967233659 6.13423750040057 6.41171253171101 5.26180807689701 4.81660342700059 7.19495973980005 5.21169929431688 0.260076406207135 0.252587625624950 0.256377050014499 0.245437458839007 0.247706997560039 0.253877482863204 0.243179521359573 0.248639273887125 0.272449020381064 0.249822847711729 0.243179521359573 0.243179521359573 0.262775288732372 0.251080858643661 0.244747548195427 0.251067460329404 0.261108295211735 0.243179521359573 0.243321162665745 3 3|0 +|/ 7160891 7161925 7161329.889 7160683 7162195 + gene protein_coding_gene FALSE TRUE AT3G20510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G50740.1); similar to hypothetical protein 11 [Plantago major] (GB:CAJ34819.1); similar to Os03g0584300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050565.1); similar to Os03g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050510.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.124544497170148 1.61757004251950 0.142619961496607 1 1.95592892365292 12.4715010509819 0.124544497170148 0.0532409321108108
AT3G06670_at 7.08393208542376 6.935352211133 6.46071815337905 6.59663927322371 7.02493467602394 7.17864071279323 6.56725627716963 7.03387059495308 7.13275682908665 6.91527205914513 6.57513555668554 6.84854113667888 6.77993631652326 6.90174318786301 6.59062336332199 7.26319350292469 7.04438554336911 6.43244912913538 6.99547269697753 0.170305816046513 0.171880334593712 0.175224909477219 0.172790395986042 0.174917071695253 0.177425478431249 0.174517639734295 0.168894191707579 0.173605245351722 0.173685823007456 0.172222265094048 0.168428461561663 0.168428461561663 0.176878954548883 0.174120903192099 0.173028034018419 0.171141643715320 0.178292019012602 0.170443138064817 3 3|0 -|/ 2106101 2106546 2106304.8 2105465 2113421 - gene protein_coding_gene FALSE TRUE AT3G06670.1 binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism similar to hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT5G49390.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53932.1); similar to Protein of unknown function DUF625 [Medicago truncatula] (GB:ABD32317.1); similar to Protein of unknown function DUF625 [Medicago truncatula] (GB:ABE83194.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein of unknown function DUF625; (InterPro:IPR006887); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) -0.149934574827624 -1.61689394356373 0.142766434891524 1 1.95507036024379 13.7696687457453 -0.149934574827624 0.0918829002751988
AT3G49220_at 8.59022996413772 8.67537053484686 8.48411118093227 8.66321146487036 8.6495797201187 8.32679918657659 9.56132700548422 9.65853587477317 9.33569913710793 9.02620172291441 10.2371831909266 10.2886438885335 9.79684377269804 10.2932926822214 10.4429491809333 10.3646218073356 9.39162058645817 10.2033983411615 9.45145509128803 0.115565098093229 0.113578673018648 0.124171169917513 0.117046128884724 0.110702845716293 0.130046791747787 0.111423781825003 0.111053003991014 0.122752088162866 0.109325130748896 0.11004937569845 0.108891425702652 0.114467870295501 0.112089823607607 0.114048534708930 0.109362315125983 0.116130137114526 0.113679866722185 0.110169141287184 3 3 + 18264089 18264592 18264359 18260761 18264824 + gene protein_coding_gene FALSE TRUE AT3G49220.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT5G53370.1); similar to pectinesterase inhibitor [Lycoris aurea] (GB:ABJ99595.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE82757.1); similar to Pectinesterase; Pectinesterase inhibitor [Medicago truncatula] (GB:ABE80825.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) 0.132880037080352 1.61618505559906 0.142920158681497 1 1.95417034666382 18.5253645323276 0.132880037080352 0.0676824435299679
AT1G54170_at 5.83443138598046 5.95912928078226 5.78262367470331 5.71584340126629 6.32071359146174 6.31273739943806 5.7654812266636 5.77151279742058 5.42977139846209 4.72632828002482 5.18531650841374 5.18665882191075 5.20589788895424 4.73139362080825 4.69260418589173 5.02990910426309 5.60879313706092 4.54663218679834 4.83879193203564 0.216635382450444 0.214359673991509 0.209442021943094 0.214382849393949 0.216092589997052 0.213293413473586 0.215524120936669 0.214125276156315 0.226991288756323 0.214901135086551 0.226538498125818 0.211385496080519 0.209954561574488 0.224490673605312 0.215240213526591 0.210118306071232 0.215785470189493 0.218220289228805 0.216656317809897 1 1|0 -|/ 20225517 20225923 20225721.8 20224727 20229613 - gene protein_coding_gene FALSE TRUE AT1G54170.1 CID3 (CTC-Interacting Domain 3) ataxin-2-related, similar to SCA2 (GI:1770390) (Homo sapiens); similar to ataxin-2 (GI:3005020) (Mus musculus). Member of a family of PAM2 motif containing proteins. similar to CID4 (CTC-Interacting Domain 4) [Arabidopsis thaliana] (TAIR:AT3G14010.3); similar to Os02g0480900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046850.1); similar to Ataxin-2, N-terminal [Medicago truncatula] (GB:ABE81532.1); contains InterPro domain Ataxin-2, N-terminal; (InterPro:IPR009604); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920) 0.112722161130371 1.61608655945719 0.142941529667873 1 1.95404530988128 10.9436580373496 0.112722161130371 0.0245403286169537
AT4G22830_at 5.35859376199738 5.12058625006045 4.92768112630976 5.1927208518425 4.89095820300711 5.08025587977528 5.84792552951576 5.64893761915461 5.59503848449894 5.25441294503799 5.73144195556406 6.03518396642415 5.66537673686202 6.01879135612590 6.34975001357021 5.78787417431691 5.19954993690314 5.88851243945991 4.4036508408676 0.238224409478066 0.244834192789465 0.247264692516696 0.239208543384139 0.242097879089175 0.250037463453181 0.250004940744327 0.251806040428500 0.261120367057236 0.255958195647700 0.237824128706734 0.237824128706734 0.250913214488287 0.246834925735887 0.243341024737684 0.237848748759215 0.258852704290364 0.244505500818018 0.243721342008661 4 4 - 11991059 11991312 11991172.222 11990149 11991385 - gene protein_coding_gene FALSE TRUE AT4G22830.1 similar to hypothetical protein sll0608 [Synechocystis sp. PCC 6803] (GB:NP_442291.1); similar to Os04g0379400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052589.1); similar to OSJNBb0089B03.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE03987.1) 0.139542936993363 1.61520080428444 0.143133844991744 1 1.9529210473532 10.7179211506436 0.139542936993363 0.0778406400524382
AT1G77920_at 8.358905888313 8.83756842938281 8.88031525944836 8.99111449278517 9.33670903910248 8.69200673639393 8.00990240320788 7.78923648438326 3.7785016690556 6.05081087578959 3.68012347152698 3.30815599829686 4.34771736652401 3.92268873721976 2.95512655517889 4.76258490059538 6.23679602762064 4.07240371179836 3.65929225973409 0.241220629208828 0.238374466172721 0.239131360668454 0.238939934096699 0.240058964928456 0.246151191303948 0.240059580543243 0.236960391659674 0.247416310336267 0.242077169527052 0.236960391659674 0.239971491285166 0.244970832464226 0.249942791125095 0.241838164866315 0.236960391659674 0.25656391530494 0.245560869797814 0.243881836643658 1 1 + 29304746 29305477 29305130.364 29303137 29305757 + gene protein_coding_gene FALSE TRUE AT1G77920.1 bZIP family transcription factor Identical to Transcription factor TGA7 (AtbZIP50) (TGA7) [Arabidopsis Thaliana] (GB:Q93ZE2;GB:Q9SH09); similar to TGA3 (TGA1a-related gene 3), DNA binding / calmodulin binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G22070.1); similar to TGA-type basic leucine zipper protein TGA1.1 [Phaseolus vulgaris] (GB:AAK84888.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Asp/Glu racemase; (InterPro:IPR001920); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.195315537589712 1.61403992567621 0.143386251133738 1 1.9514480346163 12.9404204404379 0.195315537589712 0.145379185053405
AT1G79340_at 8.29186582154811 8.67673807038247 8.24784517568701 8.45774816914026 8.4513703886554 7.98860642714714 8.27177785557398 8.3213498486769 7.93755463312499 7.47771770764298 8.1555028988332 8.42522380743963 8.17577263403309 8.48419222432033 7.9912835072916 8.106301793989 7.56822632118087 7.61072873064285 7.47861470931997 0.154709964139246 0.156500541265395 0.156134883414882 0.151591932082551 0.160955268556443 0.166262353544998 0.163062317041689 0.157802932595972 0.168773736267933 0.170083013836203 0.154054346020748 0.156354369125317 0.158402683334444 0.153087316822255 0.159955979830278 0.151591932082551 0.174241094038165 0.159729147969219 0.165514729581077 1 1 + 29848668 29849226 29848925 29847664 29849531 + gene protein_coding_gene FALSE TRUE AT1G79340.1 latex-abundant protein, putative (AMC7) / caspase family protein similar to AMC6/ATMCP2B (TYPE-II METACASPASES), caspase/ cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G79330.1); similar to latex-abundant protein [Hevea brasiliensis] (GB:AAD13216.1); contains InterPro domain Peptidase C14, caspase catalytic; (InterPro:IPR011600) 0.164658973732877 1.61394972216257 0.143405880717412 1 1.95133359907537 16.1863875561409 0.164658973732877 0.110645931203391
ATCG00360_at 8.82155375140423 9.28368936887926 9.40014026997276 9.56953078458827 9.06138949862858 8.86274898819088 9.74813003399105 9.3641329484998 10.2468773518084 10.5107069256112 10.827984121766 11.526972789967 10.4087566066037 10.7264195117679 10.5450178426416 10.9979804469037 10.2851090080540 10.5938857924002 10.2154561330459 0.179824948261213 0.176488660624948 0.179615049525646 0.176232133041881 0.168167380810682 0.174977783316599 0.169439674642040 0.183473847371806 0.168465662837237 0.172469216450978 0.175758076414342 0.184303360064960 0.168167380810682 0.175342048079956 0.170250217326618 0.173310567348190 0.179033071168243 0.178521445848255 0.172652145582430 C C|0 -|/ 42586 43673 42896.375 42584 43751 - gene protein_coding_gene FALSE TRUE ATCG00360.1 Encodes a protein required for photosystem I assembly and stability. In Chlamydomonas reinhardtii, this protein seems to act as a PSI specific chaperone facilitating the assembly of the complex by interacting with PsaA and PsaD. A loss of function mutation in tobacco leads to a loss of photosystem I. Identical to Photosystem I assembly protein ycf3 (ycf3) [Arabidopsis Thaliana] (GB:P61843;GB:P56787;GB:Q9XQP0); similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to Photosystem I assembly protein ycf3 (GB:P61843); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.166872410588042 1.61327421225915 0.143552959008092 1 1.95047672141778 19.7955957397701 0.166872410588042 0.113370524632416
AT4G23980_at 7.15507332237934 6.89072759671878 7.34762728392771 6.88836463477864 6.8179021189776 6.74171122289081 6.76318187819717 6.44998006956478 5.96062377747957 6.52761729224708 6.50686970780927 6.66400506587997 6.6000444991161 6.25273344774721 6.4037766880431 6.82957415933448 6.65823541117881 6.49740241867303 6.59789660719906 0.197662323788842 0.194311955295108 0.198172996661623 0.191303409231968 0.198823676961013 0.203541711640879 0.202779313317987 0.205253756328111 0.208690398698275 0.194545583506282 0.192401749541771 0.193670023428314 0.191317831066732 0.201792770221146 0.200933248168720 0.198887135548358 0.202649975015427 0.204459612691566 0.197915398329574 4 4|0 +|/ 12453988 12454669 12454240.6 12451208 12455277 + gene protein_coding_gene FALSE TRUE AT4G23980.1|AT4G23980.2 ARF9 (AUXIN RESPONSE FACTOR 9); transcription factor|ARF9 (AUXIN RESPONSE FACTOR 9) Encodes auxin response factor 9 (ARF9). Identical to Auxin response factor 9 (ARF9) [Arabidopsis Thaliana] (GB:Q9XED8;GB:O22991); similar to ARF11 (AUXIN RESPONSE FACTOR 11), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46530.3); similar to Putative auxin response factor 20 (GB:Q9C7I9); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.161847440421423 1.61324371811991 0.143559601706415 1 1.95043804404105 13.338634049445 0.161847440421423 0.107335928515251
AT4G26690_at 7.36069975723512 7.91790397645189 7.1013773818423 7.51413788473802 7.9062999913657 7.98440571911766 8.34450822882474 8.20532843526223 8.30196455695091 7.69417150827851 9.16339483029046 8.81380400956582 8.23943456619378 8.66234659977975 8.80723330574902 7.96640111416276 7.8443276597405 8.58208454879928 7.49055510061091 0.207010954462259 0.197659544547111 0.218003472639949 0.211539662757848 0.198602190226837 0.215155435262211 0.209625454380982 0.206869604149987 0.242053085923045 0.209982687022611 0.205361680416096 0.206421326897250 0.203311386823613 0.211621233973507 0.212879293594344 0.204321026296374 0.225931868681317 0.211870705051308 0.202453706432902 4 4 - 13456826 13457454 13457164.182 13456441 13460066 - gene protein_coding_gene FALSE TRUE AT4G26690.1 MRH5/SHV3 (morphogenesis of root hair 5); glycerophosphodiester phosphodiesterase/ kinase Involved in root hair development. Identical to Probable glycerophosphoryl diester phosphodiesterase 2 precursor (EC 3.1.4.46) (GPDL2) [Arabidopsis Thaliana] (GB:Q9SZ11;GB:Q93ZT1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT5G55480.1); similar to glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66970.1); similar to protein kinase family protein / glycerophosphoryl diester phosphodiesterase family protein [Arabidopsis thaliana] (TAIR:AT1G66980.1); similar to putative glycerophosphoryl diester phosphodiesterase family protein [Nicotiana tabacum] (GB:BAE53680.1); similar to B0806H07.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67272.1); similar to Os04g0472300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053060.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) 0.175213209413743 1.61300316888842 0.143612011595828 1 1.95013295489495 15.9612203641374 0.175213209413743 0.123138978526887
AT3G57240_at 9.27320471783888 9.36812271795703 6.61884440700134 6.33127786909278 5.66646709583577 5.58136416218919 2.75676805232456 2.69132598711858 7.32889296398046 2.73893693272185 3.40673805991183 5.68374604404764 3.29362509899587 4.29190036847215 3.70082735793031 3.68175782154417 2.9717935606962 4.79907020372468 2.70165327935040 0.330850525894363 0.329116478065122 0.334606567827703 0.328514265331292 0.321164888495379 0.332690706234607 0.332305040873617 0.345061328203673 0.334018353924339 0.339846381828444 0.318491510845398 0.324175386340532 0.326612771085216 0.325468692625994 0.315624115732756 0.315624115732756 0.323530885591203 0.322779235209985 0.334923624264273 3 3 - 21192924 21193448 21193273.091 21192721 21194053 - gene protein_coding_gene FALSE TRUE AT3G57240.1 BG3 (BETA-1,3-GLUCANASE 3); hydrolase, hydrolyzing O-glycosyl compounds encodes a member of glycosyl hydrolase family 17 similar to BGL2 (PATHOGENESIS-RELATED PROTEIN 2), glucan 1,3-beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G57260.1); similar to beta-1,3-glucanase (GB:AAA32756.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) -0.125339531441102 -1.61135348278924 0.143971906967796 1 1.94804125438769 10.1535102293862 -0.125339531441102 0.0556012310493841
AT3G25545_at 6.54950866041289 6.54515015877333 6.90565948602079 6.51798003055577 7.14148269579266 5.86517317180415 7.24425000266006 7.00481330364156 4.86430231843218 5.73939565077065 5.16229465178271 5.10634057758942 5.51208210007132 4.90979125534003 4.75836378492131 5.26985390741685 5.28196170968729 4.69461448676901 5.6673028095691 0.277088583271943 0.267125444750181 0.275315957678778 0.265404737683722 0.276787547689431 0.279303061979361 0.284254692966154 0.272115862104155 0.277700130187576 0.276407503511291 0.268757646375169 0.265014407449789 0.264825641551749 0.268449155541651 0.265375523102956 0.264825641551749 0.269360186963102 0.270578371655508 0.270527811353320 3 3 + 9279080 9279512 9279307.455 9278082 9279866 + gene protein_coding_gene FALSE TRUE AT3G25545.1 similar to Os01g0219000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042416.1) -0.282555401194343 -1.61073218476546 0.144107661445904 1 1.94725375857841 11.9770420564349 -0.282555401194343 0.234526441860268
AT1G20340_at 13.6335159696397 13.8644389618899 13.5666392252898 13.6189378693839 13.5587256539966 13.4854328547631 14.1071972767434 14.3148149660112 14.5646822079009 14.5962004802357 14.8255868370041 14.8476728502036 14.7557046086034 14.7259858567878 14.7671286956694 14.6494553853740 14.3105661401630 14.7137448469693 14.4222254497155 0.063720684947324 0.0583753545224092 0.0634911762474393 0.0636724131388762 0.0583753545224092 0.0659579638884226 0.0602497376064819 0.0589968161047829 0.0645852484672364 0.0583753545224092 0.0607799805207016 0.0594750890881325 0.0594781234166794 0.0599578751860236 0.0593042491098717 0.0590565933399489 0.0696406715139879 0.0597536032803646 0.0593084438732732 1 1 - 7042792 7043200 7042976.727 7042419 7043353 - gene protein_coding_gene FALSE TRUE AT1G20340.1 DRT112 (DNA-damage-repair/toleration protein 112); copper ion binding / electron carrier recombination and DNA-damage resistance protein (DRT112) Identical to Plastocyanin major isoform, chloroplast precursor (DNA-damage- repair/toleration protein DRT112) (DRT112) [Arabidopsis Thaliana] (GB:P42699;GB:Q9LN26); similar to plastocyanin [Arabidopsis thaliana] (TAIR:AT1G76100.1); similar to DRT112 (GB:AAA32787.1); contains InterPro domain Plastocyanin; (InterPro:IPR002387); contains InterPro domain Blue (type 1) copper protein; (InterPro:IPR001235); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Blue (type 1) copper subtype; (InterPro:IPR011572) -0.125389976366626 -1.60952192114606 0.144372439434964 1 1.94572017611870 28.3823045298218 -0.125389976366626 0.0559524871022195
AT3G55400_at 8.23129981943116 8.3547219572885 8.28350333702211 8.1655301392392 8.5223917649233 8.1084533405432 8.67807153444587 7.99921129773666 7.03037163543926 7.66926300617 7.34265211456411 8.25906396123883 7.4545803324431 7.83133531080051 8.1832105099256 8.0180643804807 8.06311319798094 7.94640148189817 7.6823814832202 0.181931771290597 0.178734095873760 0.18048304845371 0.183688441966291 0.180754275515707 0.185729593134013 0.181537757332298 0.177324773134070 0.186966319159498 0.179586328345257 0.185933894269993 0.181445693136368 0.182845203420758 0.183061420058024 0.190248958830061 0.180107685839732 0.181746307911964 0.177324773134070 0.183991698319121 3 3|0 -|/ 20546903 20547638 20547314.4 20546608 20550044 - gene protein_coding_gene FALSE TRUE AT3G55400.1|AT3G55400.2 OVA1 (OVULE ABORTION 1); ATP binding / aminoacyl-tRNA ligase|OVA1 (OVULE ABORTION 1) similar to methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative [Arabidopsis thaliana] (TAIR:AT4G13780.1); similar to Os03g0209600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049336.1); similar to Putative methionyl-tRNA synthetase [Oryza sativa (japonica cultivar-group)] (GB:AAN77311.1); contains InterPro domain Cysteinyl-tRNA synthetase, class Ia; (InterPro:IPR002308); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Methionyl-tRNA synthetase, class Ia; (InterPro:IPR002304) 0.190387056381539 1.60845994066836 0.144605140114511 1 1.94437495653770 15.9668852502169 0.190387056381539 0.140733659929097
AT1G26630_at 12.5390718551860 12.5583186416554 12.6380809328637 12.6057809181211 12.4709657052696 12.6064971726883 12.3534644073726 12.5129026343495 12.6516139060570 12.3945245511783 12.7029993463186 12.6713870312337 12.6314138746246 12.6600650172394 12.8476253708921 12.4496378634743 12.5491266912349 12.6129985557041 12.4465951489958 0.063042755991687 0.0637745142838556 0.0634887977125987 0.0630238642368013 0.0617271227202852 0.0660896265170306 0.0626148258769212 0.0642896559432084 0.0640285431054967 0.0627964705938279 0.0621217440589983 0.061446713081239 0.0612240168231536 0.066679309864223 0.0622403627804662 0.0618829921907457 0.064180948634686 0.0620833210912101 0.0629693335362564 1 1|0 +|/ 9205972 9207039 9206560.444 9205823 9207370 + gene protein_coding_gene FALSE TRUE AT1G26630.1|AT1G26630.2 eukaryotic translation initiation factor 5A, putative / eIF-5A, putative Identical to Eukaryotic translation initiation factor 5A-2 (eIF-5A-2) [Arabidopsis Thaliana] (GB:Q93VP3;GB:Q9LQY9); similar to eukaryotic translation initiation factor 5A, putative / eIF-5A, putative [Arabidopsis thaliana] (TAIR:AT1G69410.1); similar to eukaryotic translation initiation factor-5A [Brassica napus] (GB:AAR91929.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Eukaryotic initiation factor 5A hypusine (eIF-5A); (InterPro:IPR001884); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain KOW; (InterPro:IPR005824) 0.116235323845667 1.60834605973953 0.144630113848559 1 1.94423072851168 25.1047525772302 0.116235323845667 0.0367931701930242
AT3G47610_at 7.18926278660488 7.37087911711549 6.72507522629196 6.91908539194371 7.64405796515813 7.28108325729093 6.99715391065941 6.5295144049771 6.77408451281893 6.9654958287313 6.21208884851235 6.5544924404493 6.33853427734842 6.57608401658629 5.92101948090438 6.7951373910353 6.73510134356747 6.32883645329293 6.91231474712394 0.231986373390602 0.228945276528913 0.232026712270818 0.234504997938144 0.239901739904747 0.237214499463918 0.239482533239618 0.237907277975424 0.235773791113676 0.228637763416351 0.231459628144335 0.227750533715072 0.230132411645676 0.237216757698258 0.240345778950452 0.227750533715072 0.239835055161195 0.227750533715072 0.231953100685882 3 3|0 +|/ 17561241 17562163 17561847.444 17560106 17562405 + gene protein_coding_gene FALSE TRUE AT3G47610.1 transcription regulator/ zinc ion binding similar to PREDICTED: similar to thyroid hormone receptor interactor 4 isoform 2 [Macaca mulatta] (GB:XP_001107771.1); similar to PREDICTED: similar to thyroid hormone receptor interactor 4 isoform 3 [Macaca mulatta] (GB:XP_001107836.1); similar to PREDICTED: similar to thyroid hormone receptor interactor 4 isoform 1 [Macaca mulatta] (GB:XP_001107714.1); contains InterPro domain Zinc finger, C2HC5-type; (InterPro:IPR009349) -0.165340171382020 -1.60717462194358 0.144887233798246 1 1.94274741641253 13.7403274130153 -0.165340171382020 0.112293914127981
AT3G54900_at 10.4721456425733 10.5807758321858 10.3703761317232 10.4458328542518 10.6725726946600 10.273477098826 11.3906379913092 11.3703488472880 10.8753920952630 10.8346560602895 11.0946679857120 11.1680888248402 10.8236246582202 11.0584235971159 11.3534415328638 11.0048433612898 10.7120421895538 10.9896125720589 10.6407209964580 0.0848935780564741 0.0826427301988119 0.0870834134957892 0.0851457475845445 0.0823203516936371 0.0948241520284284 0.0836122318474694 0.0846793401148963 0.0877284699934784 0.0828901115390146 0.0829676695605984 0.0834917204792916 0.0837840904796653 0.0855537854873171 0.0832674985667583 0.0829102834680393 0.0887365768596788 0.0841926669439856 0.0823203516936371 3 3 - 20352918 20353324 20353163.273 20352566 20353371 - gene protein_coding_gene FALSE TRUE AT3G54900.1 CXIP1 (CAX INTERACTING PROTEIN 1) A.thaliana PICOT protein.It activates CAX1 gene Calcium transport activity.In other organisms, PICOT proteins appear to play a negative regulatory role in cellular stress responses. Identical to Monothiol glutaredoxin-S14, chloroplast precursor (AtGrxS14) (CAX- interacting protein 1) (CXIP1) (AtGRXcp) (GRXS14) [Arabidopsis Thaliana] (GB:Q84Y95;GB:Q9SV38); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G04950.1); similar to Os03g0851200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051913.1); similar to Glutaredoxin-related protein [Crocosphaera watsonii WH 8501] (GB:ZP_00518290.1); similar to COG0278: Glutaredoxin-related protein [Nostoc punctiforme PCC 73102] (GB:ZP_00107743.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.135454505301911 -1.60695054996256 0.144936462787270 1 1.94246374987284 21.601612290374 -0.135454505301911 0.0728441286645724
AT4G08310_at 6.89877646267219 7.70428751009192 6.94999749135492 6.85358054417882 7.74835018486855 7.6426478332169 7.3839655769086 7.05293114292094 7.36960762407813 7.83813341755986 7.50857875996519 7.84003255963491 7.42495136002629 7.36925642896113 6.84294893513618 7.58004937175856 7.30669648379845 6.35062367385507 7.94889154757733 0.186618160186080 0.187738244123386 0.191400670903903 0.193362950856474 0.193352924383488 0.186618160186080 0.191117686689091 0.194946798697744 0.209043607967560 0.189634639222445 0.189572220554277 0.190960985830177 0.197819986873129 0.194384364815989 0.18929683328483 0.190762488429673 0.201429114205522 0.207510785082885 0.196537734001185 4 4|0 -|/ 5249318 5249973 5249657.4 5248861 5252147 - gene protein_coding_gene FALSE TRUE AT4G08310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G44780.2); similar to hypothetical protein DDBDRAFT_0192009 [Dictyostelium discoideum AX4] (GB:XP_629009.1); similar to Os11g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068054.1) -0.201165746420042 -1.60613737015746 0.145115247236685 1 1.94143445899662 14.7777019564668 -0.201165746420042 0.152730036345063
AT4G37200_at 10.2448380740636 10.3180773564786 10.5385639677116 10.4128261695039 10.5974772793036 10.3729914418374 10.8542998028717 10.8941843948647 10.7034259953762 10.5541115718041 10.6805150846020 10.3876268644640 10.5492531451057 10.5976302738270 10.0563406087282 10.7372690552401 10.2317960169164 10.4706928481944 10.5640695286689 0.105875912401566 0.103418935281510 0.102277524323803 0.104040511059358 0.104215371304473 0.108025932046305 0.109369040105910 0.103156289218445 0.107359055849841 0.102277524323803 0.103752686174651 0.104713983299911 0.104301614691837 0.110191576705955 0.105326221627584 0.103882740870698 0.118085040925275 0.108708824995796 0.103541708520153 4 4 - 17509833 17510835 17510215.545 17509615 17511358 - gene protein_coding_gene FALSE TRUE AT4G37200.1 HCF164 (High chlorophyll fluorescence 164); thiol-disulfide exchange intermediate Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen. similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to thioredoxin family protein [Musa acuminata] (GB:ABF70019.1); similar to Os03g0767500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051387.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.120348535314423 -1.60512166448498 0.145338839676947 1 1.94014917948104 21.0647037370383 -0.120348535314423 0.0468075784660942
AT3G21810_at 5.97011355320813 6.0250477327354 5.29756183071608 5.7733602452355 5.47661028874274 4.780030305858 4.42933920885538 4.58899424686766 4.81003875931059 4.33693096235525 4.15400784873141 4.25084196099397 4.13729835932426 4.67070895245749 3.41462084984604 4.23434439667811 3.81504809744987 4.29593662194833 4.63791143893915 0.247580799570424 0.238990391327447 0.248279992326191 0.233950395904674 0.233950395904674 0.236221996039466 0.233950395904674 0.237985577786281 0.242124739337703 0.240763568576519 0.242629966696387 0.238216255043923 0.237417877136761 0.242071383512627 0.248056933226323 0.23989274377325 0.249616485942938 0.238759434641179 0.238024981410403 3 3|0 +|/ 7687456 7688342 7687824.556 7684437 7688623 + gene protein_coding_gene FALSE TRUE AT3G21810.1 zinc finger (CCCH-type) family protein similar to BRI1-KD interacting protein 105 [Oryza sativa (japonica cultivar-group)] (GB:BAD11333.1); similar to Os02g0161200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.197421259359105 -1.60478936329020 0.145412058627738 1 1.93972877076949 9.65091281292587 -0.197421259359105 0.148878847724961
AT2G18740_at 5.7504621019349 6.02034942766729 5.54350885330518 5.87208545745541 5.99744802631671 5.41071123563193 5.96935903440203 5.66689630864791 5.47480634541055 4.74546372569692 5.59425222702504 6.4590260885236 5.28646435995408 5.66357812890919 5.86636519825733 5.77636434977976 5.39742268807503 4.82766599741062 5.05645234720458 0.198352475144992 0.19213970673543 0.199885152590313 0.194796095465118 0.192008537095502 0.200123047282571 0.196128978254861 0.191659448040907 0.204197936554157 0.193379336546119 0.196145236302173 0.189112116821089 0.191284695116239 0.196542392333698 0.191583377248797 0.192508851648772 0.196143778363410 0.194891517595156 0.188752052637100 2 0|2 /|+ 8130692 8131500 8131222 8130303 8132086 + gene protein_coding_gene FALSE TRUE AT2G18740.1|AT2G18740.2 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative similar to small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] (TAIR:AT4G30330.1); similar to PREDICTED: similar to CG18591-PA [Apis mellifera] (GB:XP_001119876.1); similar to Os02g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045754.1); similar to ENSANGP00000022836 [Anopheles gambiae str. PEST] (GB:XP_311506.3); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649)|similar to small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] (TAIR:AT4G30330.1); similar to Os02g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045754.1); similar to ENSANGP00000022836 [Anopheles gambiae str. PEST] (GB:XP_311506.3); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.185411624326044 1.60341511508656 0.145715214583390 1 1.93799060576230 11.1294191485931 0.185411624326044 0.135883235597308
AT1G74950_at 8.3559438860395 8.55129779195163 7.99072520272614 7.8726332009109 8.118644104242 7.87765849662904 7.21313605644604 7.17648825835804 6.20743833798847 5.9022698152685 5.54324804907857 4.96698138647623 5.43020045062278 5.31873499673386 5.05300662679905 6.06345908941999 5.54110620676209 5.77095533874531 5.4504008442971 0.232942593551014 0.238834124213922 0.239469426302068 0.240216456268613 0.230750582589043 0.233600225393679 0.23464554180766 0.241160672607812 0.235281778596301 0.241746827780137 0.233111578545053 0.235282093250175 0.237419682249991 0.236679743661796 0.243543331976340 0.229897919811098 0.254666830627432 0.241495186017505 0.238402045303146 1 1|0 -|/ 28152586 28153426 28152994.7 28152236 28154105 - gene protein_coding_gene FALSE TRUE AT1G74950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G19180.1); similar to PnFL-2 [Ipomoea nil] (GB:AAG49896.1); contains InterPro domain ZIM; (InterPro:IPR010399) -0.125854697421705 -1.60238322935739 0.145943222709178 1 1.93668594836054 13.5517314666285 -0.125854697421705 0.0577924836235032
AT1G63090_at 7.88627916941114 8.14188355638755 9.34465625417693 9.20527130412646 9.67882514774726 8.9374452497815 9.8471578176874 9.98854619957277 9.96026372844323 10.0238960035153 9.70271111922103 7.82381923834387 9.20725514959265 9.44551334023824 7.96487098810235 9.396062808506 9.858301518448 9.31809779711324 9.39529446314818 0.164807286954867 0.165568517474404 0.150640745891179 0.154439361938683 0.147668825515945 0.157321209048025 0.155904363860792 0.153827541047882 0.162748122695116 0.153917675802156 0.147668825515945 0.158375914067595 0.149373120808625 0.162037078770046 0.155786109686194 0.148767469051729 0.154283312299575 0.149242066369693 0.149912471265580 1 1|0 -|/ 23394958 23395971 23395330.3 23394728 23396516 - gene protein_coding_gene FALSE TRUE AT1G63090.1 ATPP2-A11 (Phloem protein 2-A11) similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE90560.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.188994800114956 -1.60237626612347 0.145944762421211 1 1.93667714585555 18.5701232840187 -0.188994800114956 0.139992195073489
AT1G06430_at 10.2034638611287 10.2059697778769 10.7771562501362 10.7896201528081 10.348107359081 10.1249134593121 11.0934143499819 11.1730553039286 10.7667067861171 10.9688656668071 10.7109429082322 10.4878934416596 10.7498028839900 10.8323853783186 10.4110637716459 11.0175601710352 10.8096771947332 10.7598390355936 10.6598047899018 0.079970083560529 0.0784894674691886 0.0799708241089125 0.0797809164240905 0.0782345398650781 0.0817475748762096 0.0789207188086389 0.0783180939183352 0.0906395210755461 0.0782911971239822 0.0796758343569533 0.0776145716154207 0.0770392997360069 0.0785145691067504 0.0827353743280841 0.0770392997360069 0.0803689359933116 0.0791094897879 0.0788217093667595 1 0|1 /|- 1960289 1960864 1960702.9 1960057 1963009 - gene protein_coding_gene FALSE TRUE AT1G06430.1 FTSH8 (FtsH protease 8); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding encodes a FtsH protease that is localized to the chloroplast similar to VAR2 (VARIEGATED 2), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G30950.1); similar to ATFTSH6/FTSH6 (FtsH protease 6), ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15250.1); similar to putative zinc dependent protease [Trifolium pratense] (GB:BAE71245.1); similar to chloroplast protease [Capsicum annuum] (GB:CAA09935.1); similar to FtsH-like protein Pftf precursor [Nicotiana tabacum] (GB:AAD17230.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.117545000342819 -1.60232953424586 0.145955096166717 1 1.93661807069277 21.3498899038282 -0.117545000342819 0.0410689844472112
AT1G68680_at 5.86488152724379 6.51620868903957 6.256442599293 6.16327987389998 6.88707594725797 6.05189597323196 6.57892090289184 6.74621684252687 5.37089754961427 5.52181933560626 6.5785067569047 6.23034236069763 6.02885315791856 5.98819673863516 6.0740847278136 6.09088304173987 5.82666879525076 5.87302198074679 5.70987315391271 0.242476003739464 0.224891028968267 0.230399579716660 0.228217533994146 0.227462061061936 0.230125533846491 0.238940869933692 0.236625729040807 0.263179846240869 0.232045605723452 0.225732581564629 0.229508458379631 0.223725545732986 0.231227733985738 0.225333975478774 0.223725545732986 0.22502266533568 0.256636822437628 0.223725545732986 1 1|0 +|/ 25789293 25789426 25789361.222 25789169 25790587 + gene protein_coding_gene FALSE TRUE AT1G68680.1 similar to hypothetical protein MtrDRAFT_AC152406g4v1 [Medicago truncatula] (GB:ABE92599.1) 0.232619811623754 1.60142585625635 0.146155055490239 1 1.93547587195513 12.1933734817604 0.232619811623754 0.186258589592007
AT1G04430_at 8.31892057927444 8.58981397438987 7.61903075137831 7.6951980281573 8.48071472367426 8.10307696171882 9.14807140124403 9.1408347857548 9.03625852080853 9.01025242318774 10.2159661790363 9.94395994070735 9.5349020222399 9.72050076643018 9.83005621151576 9.10481386150142 8.42320196968643 9.3446624729294 8.86824404154246 0.149088951865166 0.149100174272595 0.154104411660767 0.157005131195631 0.147697416643806 0.160715826499009 0.146939023283024 0.149750313194282 0.155210590111717 0.142878019879695 0.154079355704763 0.148787878456741 0.146484725046550 0.148159913860719 0.158061844546437 0.143225646720232 0.162051700831046 0.146876962084104 0.143509887519364 1 1 + 1200729 1201255 1200947.182 1198118 1201526 + gene protein_coding_gene FALSE TRUE AT1G04430.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT3G23300.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT4G14360.2); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47791.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE90857.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.140866068053674 -1.60092655385131 0.146265643965359 1 1.93484491826794 17.6301291122917 -0.140866068053674 0.0815099101595037
AT2G34510_at 8.23606275719908 8.5920806711669 6.87232357844565 6.74868642021953 8.5226323570945 8.34917525975798 7.69133442713717 7.9458550000789 9.0862474524773 7.96853465307431 9.49025767971553 9.2151358888346 8.9312237228991 8.90180245224094 9.12694926272004 8.18924220639202 6.8279159290932 8.79083789760916 8.37505646634776 0.211199937886452 0.200095995727736 0.212542259708765 0.207456133418767 0.193910862988701 0.211620396650901 0.198720169401381 0.201808001777266 0.218088453035765 0.203759192994209 0.199044180390490 0.199169506923126 0.192895626265939 0.207377271961300 0.200219205640037 0.204291363669993 0.243225727253439 0.203601273335885 0.196374191456664 2 2 - 14551196 14551695 14551484.455 14551076 14553958 - gene protein_coding_gene FALSE TRUE AT2G34510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29980.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); similar to Os01g0756600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044289.1); similar to Os01g0531400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043243.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.142785518688910 -1.60069568639077 0.146316803499403 1 1.9345532108255 16.4501605525064 -0.142785518688910 0.084230344659701
AT1G12880_at 5.73283690896931 6.03708496707469 6.3213363846125 6.04785034327616 6.61395899129264 5.84055217058139 7.09834604968707 6.81820559152608 6.93671188472476 7.59023055543367 7.56945019433936 6.92618643581936 6.72619724939715 6.82487452229528 6.74851764567869 7.31434407668668 6.89757097288182 7.35884960740055 7.20116255341372 0.167580802007099 0.161001602984294 0.172146756755304 0.176632352696932 0.165336972008968 0.172489712803358 0.169242336862395 0.163772043876465 0.167343458678984 0.164241065592382 0.167306824513179 0.160617939818884 0.163419040591653 0.168152802248120 0.171779230705871 0.163796996256983 0.173257151609167 0.164272676391564 0.161489462699145 1 1|0 +|/ 4390058 4391015 4390679.75 4389749 4391149 + gene protein_coding_gene FALSE TRUE AT1G12880.1 ATNUDT12 (Arabidopsis thaliana Nudix hydrolase homolog 12); hydrolase Identical to Nudix hydrolase 12, mitochondrial precursor (EC 3.6.1.-) (AtNUDT12) (NUDT12) [Arabidopsis Thaliana] (GB:Q93ZY7;GB:Q9LPW1); similar to ATNUDT13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13), hydrolase [Arabidopsis thaliana] (TAIR:AT3G26690.2); similar to Os11g0531700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068011.1); similar to Os02g0520100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046973.1); similar to Nudix hydrolase 13, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22503.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) -0.206323366667652 -1.60063136970447 0.146331058770944 1 1.93447194861904 13.4579966771707 -0.206323366667652 0.158984245209305
AT4G38920_at 11.2171767263192 11.2782905184767 11.5207501727993 11.5024403774793 11.3951886424059 11.4747859025170 11.4823205089593 11.7388697493720 11.2726733014195 11.2533432940691 11.4105095518349 11.2773932793784 11.4443237511248 11.4114432493675 11.4965066215971 11.1984391946761 11.3173696587188 11.4755253736616 11.0217946620177 0.0584686270745575 0.055241747711527 0.057381656955168 0.0567505882936258 0.0566662229138784 0.0578892320457685 0.0585780400466798 0.0559133977405307 0.0558450287746538 0.0562466810147708 0.0561297419038621 0.0558771418813375 0.0552670136193006 0.0593087179030543 0.0572405427639281 0.0555432652714865 0.0602829557504472 0.0569029601412177 0.0568035337642347 4 4|0 +|/ 18147333 18148787 18148310 18147205 18149261 + gene protein_coding_gene FALSE TRUE AT4G38920.1 ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3); ATPase Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AVAP4) [Arabidopsis Thaliana] (GB:P59229;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q944R9;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 2) (AVAP2) [Arabidopsis Thaliana] (GB:P59228;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (GB:Q43434); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, V0 complex, proteolipid subunit C, eukaryotic; (InterPro:IPR011555) 0.120230990280720 1.59735607867887 0.147058666131373 1 1.93033585809963 22.7319991185646 0.120230990280720 0.047777939002782
AT4G15900_at 7.4041492949029 7.45361760528231 7.19313035759207 7.38131185494896 7.46573361421063 7.58350311120154 7.46413185852125 7.06055911665158 6.58760131860464 6.64943836637929 6.0492233928963 6.14895706796377 5.99162030325006 6.16575967569203 6.2727745347692 6.4111756673693 6.83431810297089 6.66344743128877 6.7317048298022 0.220941828992157 0.220418731649182 0.231071592210439 0.236324242377965 0.224998839674869 0.233251273084921 0.224455498284857 0.227149076388997 0.242406180118748 0.228769117631191 0.226989667279674 0.223910278326800 0.220418731649182 0.228978086834879 0.230575136657970 0.220418731649182 0.220418731649182 0.231344648433386 0.231747495441941 4 4|0 +|/ 9026026 9027412 9026529.286 9023743 9027681 + gene protein_coding_gene FALSE TRUE AT4G15900.1 PRL1 (PLEIOTROPIC REGULATORY LOCUS 1); nucleotide binding Mutations confer hypersensitivity to glucose and sucrose and augments sensitivity to cytokinin, ethylene, ABA and auxin. Encodes a nuclear WD40 protein that is imported into the nucleus. Identical to PP1/PP2A phosphatases pleiotropic regulator PRL1 (PRL1) [Arabidopsis Thaliana] (GB:Q42384); similar to PP1/PP2A phosphatases pleiotropic regulator 2 (PRL2) [Arabidopsis thaliana] (TAIR:AT3G16650.1); similar to PP1/PP2A phosphatases pleiotropic regulator PRL1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95840.1); similar to Os03g0339100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050058.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.139391691960770 -1.59485216451229 0.147617119851543 1 1.92717671518357 13.8624709484741 -0.139391691960770 0.080167468333405
AT1G34470_at 6.51480684292018 6.65010972422149 6.43456410964095 6.31974659775164 7.24877717492716 7.00433414341755 6.89654733567407 6.70873913496219 6.20035682413722 6.61131476785932 6.20454359432038 6.19410814256782 6.42806345750071 6.23122322338284 5.61969113070851 6.12176047080844 6.25903835312467 5.82632772562042 6.46251360985527 0.221469474694981 0.215091876263769 0.216506321439082 0.213240727751176 0.208910107871926 0.217682997399982 0.210196902311290 0.218373964252574 0.227560678097147 0.210921927205338 0.213818081670167 0.210594806348117 0.208910107871926 0.221182096029272 0.217784996206710 0.221086007158440 0.217450361018157 0.213510439165895 0.211795021787411 1 1|0 +|/ 12605828 12606674 12606241.111 12604278 12607011 + gene protein_coding_gene FALSE TRUE AT1G34470.1 permease-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09640.1); similar to Os01g0882300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045007.1); similar to Non-imprinted in Prader-Willi/Angelman syndrome re (GB:ABA91886.2); similar to Os05g0424800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055595.1); contains InterPro domain Protein of unknown function DUF803; (InterPro:IPR008521) -0.127414570686600 -1.59484639866554 0.147618408034027 1 1.92716944336724 12.9898645893752 -0.127414570686600 0.0615535386092056
AT3G48610_at 4.79869170781017 5.11103190507416 3.73797278934605 3.89632897020425 3.75582024349644 3.77622495703122 6.41819399154372 6.62625605244526 4.32680734649683 5.61021937289194 6.58616273868019 7.63433988855411 7.08108936375646 6.6786774881257 7.4214379771899 7.11483114384325 6.43053553193357 6.54132701442752 5.82793179936555 0.222557605840954 0.223830614327283 0.219941587314025 0.218163457258627 0.218382555416927 0.216361425096648 0.22350551288801 0.231415788377811 0.256473786246132 0.217582492271710 0.216051856065063 0.218973037654294 0.217844879124283 0.228832897881593 0.225438033888673 0.218893470145551 0.244494621318237 0.221095018074253 0.221185202635125 3 3 - 18022652 18023700 18022936.545 18022530 18025067 - gene protein_coding_gene FALSE TRUE AT3G48610.1 phosphoesterase family protein similar to phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G07230.1); similar to putative phospholipase [Oryza sativa] (GB:AAK82449.1); contains InterPro domain Phosphoesterase; (InterPro:IPR007312) -0.132946351901552 -1.59464582397144 0.147663225965930 1 1.92691648913786 10.8605832352349 -0.132946351901552 0.0705798417977168
AT2G25180_at 7.19344649810661 6.94453326353116 6.65499199990408 6.89634749267159 7.74103287081324 7.68606747057371 7.76106995636186 7.84434840964761 6.56766687802676 6.73018017516172 7.00214220401623 7.24503411646657 7.51527335950402 6.92817390176662 7.07954078560789 7.07733061596438 6.89703046215473 6.89565880358321 6.60108616384116 0.163056733347817 0.169744992664735 0.172702605694600 0.173219461761001 0.162462428154537 0.172466841654655 0.168102832162033 0.163647849964871 0.174558312811222 0.168099775604836 0.164504914751813 0.173627865305447 0.163663607443234 0.177260077302157 0.166957862156465 0.164194646848174 0.178747658803456 0.161411609875459 0.166606856983564 2 2 - 10731850 10732249 10732048.818 10731380 10734040 - gene protein_coding_gene FALSE TRUE AT2G25180.1 ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-component response regulator ARR12 (ARR12) [Arabidopsis Thaliana] (GB:P62598); similar to ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT4G31920.1); similar to SRR391 [Striga asiatica] (GB:ABG35773.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.127902859350959 1.59446478693096 0.147703688830404 1 1.92668818838043 14.1967301302726 0.127902859350959 0.0624357552052619
AT1G70900_at 8.83396141457365 8.77838245187253 9.05285062952061 9.31778947669141 9.40509707928766 8.70792426228511 8.98641890784484 8.8203421178961 8.60084120697236 8.42096717708748 8.6011723975343 8.45806006607393 8.9221016983088 8.9664773058292 8.43811984185211 9.15446731252423 8.49972673045146 8.78852810754011 8.87384416524367 0.155716496183854 0.155872990424078 0.1523747661656 0.154560623888283 0.152152336602718 0.185473461847601 0.158041743446978 0.153492718822291 0.155263071987890 0.166259488561560 0.155399693700595 0.153505060852394 0.156963120781042 0.154212152053522 0.153520346495815 0.15273971556526 0.160366534336516 0.154784418219763 0.157507040852251 1 1 + 26736373 26737252 26736869.636 26735475 26737537 + gene protein_coding_gene FALSE TRUE AT1G70900.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23110.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89195.1) 0.181418319156261 1.59427833720756 0.147745371951262 1 1.92645307534437 17.6680787253042 0.181418319156261 0.132577611740451
AT1G49350_at 5.36158831460964 5.66024641939888 5.47277400273601 5.70711391088979 5.86227841367591 6.04500191176071 4.54154175474736 4.78429985397058 4.35008559153571 4.88769259635894 4.08858558131243 3.81123260888591 3.95415173486389 4.31480209976379 3.95373219910494 3.96847756853152 4.55033285619097 4.44013068374805 4.36975172684629 0.228915958344981 0.216311899921579 0.227167904878473 0.219575370652057 0.219549972380011 0.223907662756037 0.229883384710435 0.222042939685078 0.222546546381109 0.217586196376366 0.214452932984203 0.230154503539420 0.222116240739551 0.220495124633557 0.220764455042643 0.211641421150759 0.21172999966941 0.220531800133535 0.215031418913453 1 1 + 18270033 18270678 18270274.636 18268651 18270938 + gene protein_coding_gene FALSE TRUE AT1G49350.1 pfkB-type carbohydrate kinase family protein similar to Carbohydrate kinase, PfkB [Medicago truncatula] (GB:ABC75360.1); contains InterPro domain PfkB; (InterPro:IPR011611); contains InterPro domain Carbohydrate kinase, PfkB; (InterPro:IPR002173); contains InterPro domain Ribokinase; (InterPro:IPR002139) 0.142105167860263 1.59374258483794 0.147865205211509 1 1.92577756808456 9.76486755845553 0.142105167860263 0.0841464360598928
AT1G02820_at 8.61510750060144 8.7072030465384 10.4792558143508 10.5556571810766 10.1808186219702 10.0771294573003 11.6343029046506 11.6974858381695 9.31657995292136 10.0072658921583 9.4053847449415 8.88640168617986 10.5876870435805 10.1324368711009 8.26397490722315 10.5297356374378 11.1661200156178 9.6144681588229 9.9493880225261 0.114312580924443 0.115140793242300 0.11313524013 0.104867757447229 0.106437142420172 0.115889171542780 0.111396714854530 0.112320284573353 0.129145753271894 0.107890128297749 0.108501423208544 0.112576310819582 0.110694376306703 0.116145074942563 0.115130945815083 0.111452928863646 0.109511432449556 0.114919430418603 0.109028804892781 1 1|0 -|/ 623948 624273 624104.9 623765 624475 - gene protein_coding_gene FALSE TRUE AT1G02820.1 late embryogenesis abundant 3 family protein / LEA3 family protein similar to SAG21 (SENESCENCE-ASSOCIATED GENE 21) [Arabidopsis thaliana] (TAIR:AT4G02380.1); similar to late embryogenis abundant protein 5 [Nicotiana tabacum] (GB:AAC06242.1); contains InterPro domain Late embryogenesis abundant protein 3; (InterPro:IPR004926) 0.112610978381158 1.59371333789986 0.147871749488703 1 1.92574069512989 20.0338804234064 0.112610978381158 0.0295017774153679
AT4G29750_at 7.66798069516945 8.09651320303702 7.28673545638284 7.16147104184394 8.21120641211486 7.70402460643426 8.2129655011864 7.68715638501882 6.93774690330219 7.67968162188585 7.12613112030398 7.20697601462477 7.12958501805159 7.09777299258025 7.18945829331118 7.67003061596968 7.45893490712529 7.23521029515232 7.36963336295861 0.170523116216003 0.164877857080866 0.161468304436959 0.166685857622604 0.164317962549546 0.166477698717347 0.173161014247271 0.168047579111939 0.190137416463482 0.163042699545881 0.175152583803285 0.16984296424295 0.16782522808672 0.177607982058465 0.180431128060566 0.171116289461064 0.167039410721234 0.172721987721587 0.160973212179355 4 4 + 14571982 14572779 14572362.364 14569734 14572810 + gene protein_coding_gene FALSE TRUE AT4G29750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to Os09g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062990.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.195026394575638 -1.59063401029697 0.148562246060755 1 1.92186033677849 15.0501481809095 -0.195026394575638 0.148165507706922
AT3G53400_at 7.43346345235058 7.01462459263474 7.71792862737668 7.26876473682896 7.47238468481498 7.01551528976361 7.45664721327449 6.79733272574953 6.68433485978743 6.10757948510923 6.13350564349308 6.9103766479212 6.87031752718637 7.36556336713907 5.92789957973131 7.6840216088959 6.72343676994187 6.43170735755195 6.73586845303844 0.170942311695376 0.169670725141391 0.175592766747254 0.168572160920059 0.178061336287444 0.173917063573685 0.179265810203825 0.172516824611248 0.191292379400736 0.184241857268754 0.169212106561089 0.172123400343058 0.172737163050896 0.180705836308226 0.178132126234045 0.172692619472461 0.176887674483286 0.181885907387606 0.179951516915214 3 3 + 19810313 19810864 19810588.182 19809129 19811114 + gene protein_coding_gene FALSE TRUE AT3G53400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03190.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32814.1); contains domain ARM repeat (SSF48371); contains domain no description (G3D.3.40.50.1860) 0.219861984390644 1.58944115903067 0.148830509170498 1 1.92035819568997 13.904639913038 0.219861984390644 0.174827991571743
AT4G39100_at 8.67367810330862 8.84253749684628 9.0081939961293 9.18471102554103 9.54738649398694 8.98470103074678 9.04642814583007 9.23357969471994 8.05799504920858 8.359477271861 8.59750489956969 7.9928037605379 8.56835120961364 8.63352462126145 7.8654799461303 8.59650446384969 8.22411891500303 7.84651154994271 8.17638345894056 0.214637589422035 0.215918668344931 0.207864674193265 0.211010215744966 0.217981865681709 0.237687889032402 0.227813810353267 0.215285162115859 0.247689050182404 0.20774140107998 0.215085609452757 0.208719441974805 0.219134482990509 0.213141181214705 0.214005685059286 0.208542591603301 0.230585337726118 0.235443458768617 0.209338995598098 4 4|0 -|/ 18218631 18219920 18219522.5 18217933 18220276 - gene protein_coding_gene FALSE TRUE AT4G39100.1 SHL1 (SHORT LIFE) Putative transcription factor containing a PHD finger and BAH motif, required for normal development similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G22140.2); similar to Os09g0386500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063075.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); similar to Os07g0186400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059071.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) 0.162420135246645 1.58926515447426 0.148870128308074 1 1.92013660336404 17.3094279220929 0.162420135246645 0.110986256614431
AT1G71340_at 5.66649822109544 5.63843800230723 5.90343948992186 5.41115195892181 6.28420056954592 6.21037552348427 6.26267542724294 5.92332294491771 6.29268825447334 7.1683123726049 6.76755189834467 6.66217937135819 6.63004941641088 6.68922940791113 6.32124660239718 7.0025881185828 6.74591740996748 6.47347079650388 7.70441577363264 0.192975827050952 0.188970248425135 0.189151106025362 0.182470610754019 0.181659034623930 0.188759261420036 0.186027702040083 0.189870852320859 0.195513343560172 0.183548878418798 0.184579270804691 0.183295417604930 0.183040230498902 0.19506341383063 0.186507361392832 0.183056617738477 0.185906500286841 0.193466798424819 0.192266622719195 1 1|0 -|/ 26889278 26890255 26889662.1 26889162 26892000 - gene protein_coding_gene FALSE TRUE AT1G71340.1 glycerophosphoryl diester phosphodiesterase family protein similar to Os11g0236000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067568.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95195.1); contains InterPro domain Glycerophosphoryl diester phosphodiesterase; (InterPro:IPR004129) -0.1570257179874 -1.58895278092684 0.148940467983448 1 1.91974335074631 12.7708467311404 -0.1570257179874 0.104371423192743
AT2G40950_at 6.35593655086535 6.61535754669394 6.21410366184761 6.60899245877387 5.46990426058535 5.71617684073131 4.92151968683188 5.48717464542205 4.98103171042759 4.4229393853225 4.84808215178093 5.05195668299603 4.80034841691743 4.62287512291653 4.52179860724741 4.82944682581542 5.06999907275577 4.83712846525501 4.44118622262724 0.249292405393517 0.253241009425108 0.251265408034608 0.262013626153217 0.258298511807698 0.256329711335734 0.25475497725275 0.252126671190348 0.255999252515067 0.251871976792784 0.249292405393517 0.250836889569765 0.251121942829432 0.249292405393517 0.2556561838499 0.253369184056087 0.268483436384236 0.251417562126920 0.250984109074879 2 2|0 -|/ 17094909 17095814 17095197 17094698 17097502 - gene protein_coding_gene FALSE TRUE AT2G40950.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G56660.1); similar to putative bZIP transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAT85257.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.182474588391346 1.58880797817478 0.148973084580694 1 1.91956106912566 10.6425241353038 0.182474588391346 0.134477185038579
AT2G39080_at 6.31367358994594 6.48385670770292 5.9326617574108 5.85872721482576 6.52704822684763 5.9716628242053 6.69770719812692 6.41601331288356 5.67304383030936 5.91611853874426 5.70058782265664 6.17840252971699 5.54189428634845 5.81024871688899 6.78057778360792 5.65193928275712 5.45571680834482 5.43012723909017 5.63245675778441 0.143964198734140 0.142667817782597 0.148142252580265 0.142411270635289 0.140280445661162 0.143469267591513 0.14174970577091 0.145899698697947 0.146224134867274 0.143339854283208 0.144779077868605 0.142609584630361 0.144603241955063 0.142990853440948 0.144160954036237 0.141073679301667 0.146097685840112 0.146667548881153 0.144204796133209 2 2|0 -|/ 16317082 16319516 16318294.789 16316878 16319619 - gene protein_coding_gene FALSE TRUE AT2G39080.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54696.1); similar to Os01g0367100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043040.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735); contains domain no description (G3D.3.40.50.720) -0.163570298306045 -1.58871747288990 0.148993474036223 1 1.91944714285362 12.0547821128048 -0.163570298306045 0.112449983175356
AT1G61850_at 6.25142532589823 5.77402358281303 5.96746629359518 5.33944990056026 5.7405653061841 6.04545879226971 4.90788318995956 5.4268102750706 5.46707734435526 5.43325216448726 5.70679260364425 6.28663993890395 5.51821578995124 5.99335148275789 5.72494575545774 5.46274405855905 5.81758401534363 6.19612128665932 5.86357881016925 0.223101546687941 0.227505094753359 0.226557253144834 0.225499740026636 0.227638650941029 0.223101546687941 0.240687314170366 0.230175219671139 0.226568295302805 0.230925135719142 0.238087677034338 0.223101546687941 0.226033027771984 0.223733174994081 0.229260125540485 0.226124684857914 0.239981475459425 0.231064348921528 0.223172892338173 1 0|1 /|+ 22865112 22865858 22865550.4 22859982 22865890 + gene protein_coding_gene FALSE TRUE AT1G61850.1 patatin family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT2G19330.1); similar to phospholipase, patatin family, putative [Medicago truncatula] (GB:ABE77790.1); similar to Os07g0520900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059805.1); similar to putative calcium-independent phospholipase A2 [Oryza sativa (japonica cultivar-group)] (GB:BAD30421.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Patatin; (InterPro:IPR002641); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.216764703228004 1.58853014956037 0.149035683130356 1 1.91921135426678 11.3947697363339 0.216764703228004 0.171713691539215
AT2G45070_at 10.3543628618132 10.2292333613926 10.5338145515759 10.5463246165478 10.0931120872801 9.97623014723272 9.82806732116275 9.85044544954718 10.4106567484292 9.86932515340547 10.0048427955907 10.2422726987866 10.0004434951662 10.1033697069626 10.0811718737004 9.79938878962505 9.83210770305499 10.1559075631338 9.79352206398522 0.105968137373465 0.0961072420838063 0.100064839823978 0.107541687624827 0.0941487321930853 0.104247778606237 0.0951659503322415 0.094947034991539 0.096962853027144 0.0921092327892954 0.0927614633919924 0.09084070037232 0.097685588238286 0.0928019286298121 0.0909859497449368 0.096207098435082 0.105762629277790 0.0949120707773098 0.0956374542816032 2 2 - 18594289 18594468 18594399.818 18594092 18595452 - gene protein_coding_gene FALSE TRUE AT2G45070.1|AT2G45070.2|AT2G45070.3|AT2G45070.4 SEC61 BETA (suppressors of secretion-defective 61 Beta); protein transporter|SEC61 BETA (suppressors of secretion-defective 61 Beta) Sec61 Beta Subunit Identical to Protein transport protein Sec61 subunit beta [Arabidopsis Thaliana] (GB:P38389); similar to sec61beta family protein [Arabidopsis thaliana] (TAIR:AT3G60540.2); similar to Sec61beta [Medicago truncatula] (GB:ABE79095.1); contains InterPro domain Sec61beta; (InterPro:IPR005609) 0.112389929246390 1.58851309337299 0.149039526895008 1 1.91918988590702 20.2024184996653 0.112389929246390 0.0299619860986025
AT4G30825_at 5.55351297774314 6.10010164856682 5.11903423194750 5.07678292726579 6.07881005306655 4.91062553931574 6.15609503280928 5.70377849241103 5.19775347659419 6.12365313851794 5.37990455185147 6.36933671921005 5.54957416072684 5.9887598631762 6.19735237304951 6.03714626802651 5.82693132019808 5.37898457544451 6.13996473730351 0.236152009839490 0.232795168244787 0.242984849223904 0.233295703156454 0.233848687383118 0.245404148688826 0.243752354027420 0.235786450373052 0.251409274621525 0.231100608667015 0.232999949316726 0.234382846587280 0.232465177441259 0.235621630832079 0.240841839052726 0.230703205004685 0.249561291942315 0.241492806873953 0.236496788036652 4 4 + 15011762 15012242 15011971.273 15009611 15012325 + gene protein_coding_gene FALSE TRUE AT4G30825.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G06920.1); similar to Os09g0423300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063210.1); similar to pentatricopeptide repeat protein [Physcomitrella patens] (GB:BAF34331.1); contains InterPro domain Cdk-activating kinase assembly factor (MAT1); (InterPro:IPR004575); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.280758619247579 -1.58832361983196 0.149082232483061 1 1.91895140625914 11.4180705361069 -0.280758619247579 0.236635383835760
AT1G17080_at 9.29557610305686 9.65260629469599 9.53215492957417 9.76092476293598 9.43536920742195 9.1246359779654 8.89919960392928 9.17988755938623 8.93926591194104 8.68221108306568 9.04838070052782 8.90811657041757 8.91276391395073 8.97591476727481 8.5182998055495 8.83023704985563 8.69615094577861 8.90339929953005 8.60987302572659 0.124370985620554 0.119523115489726 0.125422953291442 0.134566040073055 0.121021390658177 0.122384966400372 0.126504171227742 0.124012840597758 0.128073455920359 0.124351324588382 0.120125411901598 0.119039873818459 0.119853460401140 0.12200148893179 0.129580526268889 0.117305250161091 0.131895424836495 0.119491960915621 0.116803858577428 1 1|0 -|/ 5840619 5841428 5841061.125 5840262 5841599 - gene protein_coding_gene FALSE TRUE AT1G17080.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53560.1); similar to Os01g0667100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043806.1); similar to Os05g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056334.1); similar to Os01g0242900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042559.1); contains domain 60S RIBOSOMAL PROTEIN L18A (PTHR10052); contains domain 60S RIBOSOMAL PROTEIN L18A, PLANT (PTHR10052:SF2) 0.155914185286722 1.58770399445749 0.149221967573603 1 1.91817161840871 18.1565149157982 0.155914185286722 0.103130570811549
AT1G31170_at 10.0416358422101 10.1722402401256 10.6513350145207 10.5896262133903 10.5028294312215 10.3554177910356 10.6041891300792 10.7150153548450 10.2696926710991 10.3546874979697 10.5035293296525 10.20381205072 10.4649392392793 10.4916137930545 10.0047188910397 10.5884480344675 10.4291614909054 10.4003800794787 10.2603053058299 0.0990168941417244 0.0897572735370854 0.09312388060453 0.0949124784548924 0.0897297878397712 0.0937698856992494 0.0891283932285144 0.0913328931702431 0.0968068197544904 0.0888734361222254 0.0900921550295292 0.09271672843898 0.0902882901795277 0.100321525407999 0.0956491036027347 0.0897645938498335 0.0928090930274133 0.0968111045182386 0.0899511732558685 1 1|0 +|/ 11133670 11134050 11133825.667 11133466 11134386 + gene protein_coding_gene FALSE TRUE AT1G31170.1|AT1G31170.2|AT1G31170.3 parB-like nuclease domain-containing protein|AtSRX (SULFIREDOXIN) encodes a cysteine-sulfinic acid reductase (sulfiredoxin - EC 1.8.98.2) capable of reducing overoxidized plastidic 2-Cys-Prx involved in peroxide detoxification and response to oxidative stress similar to ParB-like nuclease [Medicago truncatula] (GB:ABC75369.1); contains InterPro domain ParB-like nuclease; (InterPro:IPR003115) 0.116231088001072 1.58745435693191 0.149278298138967 1 1.91785749702757 20.7943963881157 0.116231088001072 0.0405399262904113
AT2G36830_at 9.63753463284764 9.8076069415917 9.68223714279753 9.84173112495842 10.1957040784556 10.3318279398647 10.8047879949602 11.5147621897679 11.2183030142237 10.763173048435 12.2175540056585 12.024513194007 11.4303593950666 11.8035870245198 11.8505368825379 11.6229580915741 10.9425950676572 11.8301350295282 10.8036642914793 0.0864484692914353 0.0824013101788874 0.0818913654350635 0.08724951071774 0.079840690583408 0.0849764479759119 0.0801077861791058 0.0787494411652007 0.0880351839061645 0.0827949294894302 0.0787494411652007 0.0787494411652007 0.0791313450232567 0.0794552810252585 0.080814825666683 0.0787494411652007 0.0857826900180343 0.0787990215360959 0.085719196788486 2 2|0 +|/ 15452736 15453328 15453029.4 15452504 15453653 + gene protein_coding_gene FALSE TRUE AT2G36830.1 GAMMA-TIP (Tonoplast intrinsic protein (TIP) gamma); water channel encodes a tonoplast intrinsic protein, which functions as water channel. highly expressed in root, stem, cauline leaves and flowers. Identical to Aquaporin TIP1.1 (Tonoplast intrinsic protein 1.1) (Gamma-tonoplast intrinsic protein) (Gamma-TIP) (Aquaporin-TIP) (Tonoplast intrinsic protein, root-specific RB7) (TIP1.1) [Arabidopsis Thaliana] (GB:P25818;GB:P21652;GB:Q42075;GB:Q8L5T8); similar to TIP2 (TONOPLAST INTRINSIC PROTEIN 2), water channel [Arabidopsis thaliana] (TAIR:AT3G26520.1); similar to tonoplast intrinsic protein bobTIP26-2 [Brassica oleracea var. botrytis] (GB:AAN05780.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.179300924999941 1.58438280494014 0.149972966623827 1 1.91399456410486 21.5488539828378 0.179300924999941 0.131448201637527
AT3G62410_at 12.1756483741147 12.0886048415813 12.3514717389738 12.4289544854740 11.9762254332735 11.9877020967943 12.3699240764529 12.6470453188214 12.3668657234015 12.4275845722502 12.1810902188559 11.8595169281653 12.4793335749206 12.4681248850937 11.8310517499212 12.5842012209590 12.5099387491437 12.2720790008175 12.3506730390963 0.0721448203643338 0.0720424046182748 0.0720516872326618 0.0713184982241991 0.0719413789168075 0.0751009120907672 0.0714572488104215 0.0713184982241991 0.0751099534033014 0.0750291094454058 0.0723382360599896 0.0729768270643128 0.0715727246384995 0.0739817029894337 0.0737254795462318 0.071569046443356 0.076586201313113 0.0713255909951242 0.0753225239133466 3 3 + 23101984 23102345 23102149.727 23101920 23102542 + gene protein_coding_gene FALSE TRUE AT3G62410.1 CP12-2 CP12-2 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. CP12-2 is coordinately regulated by light with the photosynthetic GAPDH and PRK. The annotation of this gene is based on article 32494. similar to CP12-1 (CP12 domain-containing protein 1) [Arabidopsis thaliana] (TAIR:AT2G47400.1); similar to CP12 [Pisum sativum] (GB:CAA96570.1); contains InterPro domain Protein of unknown function CP12; (InterPro:IPR003823) -0.121378975689164 -1.58437202826796 0.1499754090309 1 1.91398101746315 24.5806344553027 -0.121378975689164 0.0520627267750351
AT3G51460_at 6.57106502854433 7.10188932302318 7.05915814849144 7.45505060630774 7.2868358533131 7.03697900589718 6.69990452591712 7.18476109564472 5.97740615439557 6.66694959167675 6.92308938090795 6.97187653002412 7.19377239825736 6.33650594531188 6.38737272107439 6.18823147364213 5.64276342847556 5.97953420442751 6.50775310433825 0.287722619034581 0.259730601691691 0.282513700691136 0.271169437012461 0.259351094899592 0.264643591858108 0.265849501491097 0.259492618074135 0.286411842290056 0.263433439823895 0.267680072653828 0.267169405149295 0.260015534021123 0.26649361177951 0.259351094899592 0.259351094899592 0.287140714961144 0.271383401411457 0.259351094899592 3 3|0 +|/ 19106871 19107854 19107429.571 19103683 19108332 + gene protein_coding_gene FALSE TRUE AT3G51460.1 phosphoinositide phosphatase family protein similar to ATSAC1B/IBS2 (IMPAIRED IN BABA-INDUCED STERILITY 2), phosphoinositide 5-phosphatase [Arabidopsis thaliana] (TAIR:AT5G66020.1); similar to Os11g0309000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067755.1); similar to Os02g0554300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047117.1); similar to MGC84016 protein [Xenopus laevis] (GB:AAH74260.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.194478943507473 1.58393175578976 0.150075222376544 1 1.91342761971895 13.46792022026 0.194478943507473 0.148466339150201
AT4G23460_at 8.35841535004031 8.32616316425845 8.30954596363195 8.1288402867111 8.63704522336071 7.68167335158518 7.63860041409368 6.64234156482292 6.80056963791134 6.59729530310066 6.99356045750145 7.17916673264291 6.42352418239028 6.88022362273354 6.71668170531962 6.95217503691785 6.59300757280445 6.65430579204544 6.63709103193153 0.238544987262133 0.236135144106665 0.241968855406374 0.236135144106665 0.236135144106665 0.245349331464518 0.244771540300242 0.247941991688063 0.257092974512453 0.263569846120599 0.237696921797705 0.240495639073118 0.242385671247163 0.248057663686318 0.239879578672177 0.248625639538434 0.244888275448171 0.249826323862691 0.252076125447943 4 4|0 -|/ 12243929 12244854 12244336.5 12243681 12248960 - gene protein_coding_gene FALSE TRUE AT4G23460.1 beta-adaptin, putative similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G11380.1); similar to Adapter-related protein complex 1 beta 1 subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96009.1); similar to PREDICTED: similar to adaptor-related protein complex 1 beta 1 subunit isoform b isoform 1 [Canis familiaris] (GB:XP_543470.2); similar to coatomer, gamma-subunit, putative [Aedes aegypti] (GB:EAT36247.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Alpha/gamma adaptin, C-terminal; (InterPro:IPR008152); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain AP2 clathrin adaptor, alpha and beta chain, appendage; (InterPro:IPR009028); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.284329031582498 1.58371457266022 0.150124481651163 1 1.91315466126704 14.7040278125342 0.284329031582498 0.240972753651017
AT4G14385_at 5.11154726590446 5.07974931730267 5.01291862827511 5.19405900893637 5.82574934240644 5.03462681372802 5.38834392178213 5.21529868252039 4.91290008527032 5.5212780074748 4.8151317569263 5.11606105485855 4.84402070964182 5.12323756164084 4.70320518538504 5.15215293978699 5.16498795434556 5.00952681513791 5.88375236012176 0.206139168386948 0.205684080527346 0.207680830092013 0.210012986089266 0.195867434718130 0.203455339478337 0.203253034553433 0.204685620266480 0.210175921170046 0.20548331427396 0.195867434718130 0.196571035794785 0.202162332878813 0.210400193948783 0.195867434718130 0.199231935079597 0.196414232290422 0.204227812363889 0.205674099361296 4 4|0 -|/ 8287141 8288580 8287883.667 8287007 8288796 - gene protein_coding_gene FALSE TRUE AT4G14385.1|AT4G14385.2|AT4G14385.3 similar to Os01g0233400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042511.1); similar to conserved hypothetical protein [Aedes aegypti] (GB:EAT35664.1); similar to Os12g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066614.1); contains domain gb def: Hypothetical protein At4g14385 (Hypothetical protein At4g14385/FCAALL.166) (PTHR13476:SF1); contains domain FAMILY NOT NAMED (PTHR13476)|similar to Os01g0233400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042511.1); similar to Os12g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066614.1); similar to Eaf6 CG12756-PA [Drosophila melanogaster] (GB:NP_647981.1); contains domain gb def: Hypothetical protein At4g14385 (Hypothetical protein At4g14385/FCAALL.166) (PTHR13476:SF1); contains domain FAMILY NOT NAMED (PTHR13476) -0.190083001140590 -1.58325124268280 0.150229618267185 1 1.912572405427 10.4479619466924 -0.190083001140590 0.143712751138061
AT3G03790_at 6.96739553706181 7.48036196879124 7.2479612242298 7.1869977988842 6.89640481342264 7.17109317701932 6.78614218941042 7.46174406471275 7.57704092038749 7.44568794740914 7.09948750068301 7.16198199470794 7.39324241032365 7.4411189087297 6.89581069258342 7.08209982064703 6.96590241580397 7.15805475526773 7.48188090836412 0.181398953886897 0.174409254701657 0.177943984727971 0.175901360392124 0.169443966463982 0.176635238418756 0.179635823709885 0.182943834698129 0.179912971048490 0.170874363083916 0.177440674294326 0.170442156127708 0.169443966463982 0.172849227111067 0.183834356425063 0.172806452416165 0.191940575649089 0.175597254697974 0.169754381118714 3 3 + 967166 967818 967516 962004 968156 + gene protein_coding_gene FALSE TRUE AT3G03790.1|AT3G03790.2 ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein similar to UVR8 (UVB-RESISTANCE 8) [Arabidopsis thaliana] (TAIR:AT5G63860.1); similar to Regulator of chromosome condensation, RCC1; Ankyrin [Medicago truncatula] (GB:ABD28429.1); similar to Os07g0165200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058967.1); similar to putative UVB-resistance protein UVR8 [Oryza sativa (japonica cultivar-group)] (GB:BAC07425.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Ankyrin; (InterPro:IPR002110)|similar to regulator of chromosome condensation (RCC1) family protein [Arabidopsis thaliana] (TAIR:AT5G60870.1); similar to Regulator of chromosome condensation, RCC1; Ankyrin [Medicago truncatula] (GB:ABD28429.1); similar to Os07g0165200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058967.1); similar to putative UVB-resistance protein UVR8 [Oryza sativa (japonica cultivar-group)] (GB:BAC07425.1); contains InterPro domain Regulator of chromosome condensation, RCC1; (InterPro:IPR000408); contains InterPro domain Regulator of chromosome condensation/beta-lactamase-inhibitor protein II; (InterPro:IPR009091); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.200060483157668 -1.5830975867392 0.150264499816993 1 1.91237932858827 14.4753870488900 -0.200060483157668 0.154663116248731
AT2G34970_at 5.5542935382169 6.05147787532443 5.16817395924159 5.6293812506636 5.85580654395963 5.24647297708108 6.4200565990023 6.41230240137487 5.60997425124712 5.75706597211249 5.72368182822032 6.03137538691827 5.8005979075854 5.52832596565902 5.96102967630426 5.61143626814401 5.46373342992839 5.83825591332697 5.18076941486534 0.241363427138202 0.245110442317112 0.252804411975628 0.251044899926601 0.240133534350626 0.249077729389048 0.245793063740905 0.245226052617376 0.240159560848971 0.243696243577396 0.244737584330909 0.246813746836745 0.255272786585027 0.253261782829111 0.244082061033641 0.247221172849129 0.247257723663919 0.235855350079092 0.242148903123033 2 2 + 14755096 14755528 14755310.455 14753386 14755860 + gene protein_coding_gene FALSE TRUE AT2G34970.1 eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G02270.1); similar to eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G18300.1); similar to hypothetical protein DDBDRAFT_0185388 [Dictyostelium discoideum AX4] (GB:XP_639192.1); similar to Os02g0812400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048478.1); contains InterPro domain eIF4-gamma/eIF5/eIF2-epsilon; (InterPro:IPR003307); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Nucleotidyl transferase; (InterPro:IPR005835) -0.202852959903652 -1.58238864203776 0.150425532617769 1 1.91148862433929 11.4226161896510 -0.202852959903652 0.157779162909251
AT2G28930_at 8.66024203149748 8.88247057818781 7.62610359523825 7.64182420051117 9.00139646149675 8.91107966676485 7.52014497094183 7.80257222021995 8.10167325423705 7.68644252811018 8.09788670068604 8.2318790871326 7.52453316295074 8.05395683253478 7.80889873431474 8.26803553866197 7.5908645239679 7.54934545236059 7.35276637020392 0.159933103957221 0.150980045118281 0.159149326113053 0.154457886968141 0.153163492198109 0.154639099759573 0.154871589631803 0.150327616085891 0.161512293979391 0.153418977615645 0.148890316375147 0.157573476893591 0.152971487457204 0.154851796710002 0.145929739716995 0.149115790608900 0.162360555106074 0.150766785928668 0.155834556100890 2 2|0 +|/ 12432978 12433589 12433261.7 12431380 12433751 + gene protein_coding_gene FALSE TRUE AT2G28930.1|AT2G28930.2|AT2G28930.3 APK1B (Arabidopsis protein kinase 1B); kinase Identical to Protein kinase APK1B, chloroplast precursor (EC 2.7.11.1) (APK1B) [Arabidopsis Thaliana] (GB:P46573;GB:Q9SLH5); similar to APK1A (Arabidopsis protein kinase 1A), kinase [Arabidopsis thaliana] (TAIR:AT1G07570.1); similar to protein kinase [Brassica rapa] (GB:BAD12263.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.12789557534172 1.58147788699015 0.150632634168668 1 1.91034466488106 16.0578804097372 0.12789557534172 0.0641832053457472
AT2G25910_at 8.69532781198313 8.46163735426564 8.62346227559574 8.42393446710526 8.71177737997702 8.50350671705676 8.1715213853342 8.0562903827438 7.84701307027845 8.19738112571667 7.8982692435913 7.96032606594314 7.98397281542426 8.22106060665581 7.87252443938827 7.81751816868901 8.20549969530686 8.02154408168258 7.82838780251578 0.153631987878847 0.152066861715211 0.148607858552611 0.155151021922644 0.148459861495097 0.152630424964531 0.152302743428544 0.159765545419374 0.165245131308783 0.156701683284631 0.15918990953107 0.148459861495097 0.160908326458952 0.156377766738084 0.159430365948242 0.148459861495097 0.161526403337660 0.155790414109493 0.161801479729489 2 0|2 /|- 11056809 11057311 11057147 11056133 11059144 - gene protein_coding_gene FALSE TRUE AT2G25910.1|AT2G25910.2 3'-5' exonuclease domain-containing protein / K homology domain-containing protein / KH domain-containing protein|3'-5' exonuclease/ nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25920.1); similar to 3'-5' exonuclease domain-containing protein-like [Solanum tuberosum] (GB:ABB86253.1); contains InterPro domain 3' (InterPro:IPR002562); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.129735683216766 1.58108865764540 0.150721221637713 1 1.90985587237678 16.4335239163021 0.129735683216766 0.0672640636989769
AT1G22750_at 10.3470772954184 10.5212066953628 10.6891705211623 10.6871534056472 10.4496675675806 10.6617014762569 10.6087462394858 10.8391145472258 10.0993376208278 9.84064019636437 10.0906046238865 9.98711560595504 10.3428313490148 10.2079182294357 9.89198949748952 10.2135533481564 10.2042124612112 10.0198734688392 9.78895124961797 0.106071719078214 0.101311359842228 0.10169959629784 0.105210312895025 0.101518978695354 0.105515884930838 0.103382365326253 0.101856717361704 0.118875869097870 0.106024966856199 0.104709461046387 0.107536742625334 0.103902271588369 0.103440239700527 0.110584263681406 0.104009895999438 0.108634477650449 0.105868049480703 0.104454362978831 1 1|0 +|/ 8051293 8052395 8051742.571 8050849 8052919 + gene protein_coding_gene FALSE TRUE AT1G22750.1|AT1G22750.2|AT1G22750.3|AT1G22750.4 similar to Os06g0581300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057938.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68608.1); contains InterPro domain Protein of unknown function DUF1475; (InterPro:IPR009943)|similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68608.1); contains InterPro domain Protein of unknown function DUF1475; (InterPro:IPR009943) 0.126503174508553 1.58019539260546 0.150924704004635 1 1.90873434384911 20.6151823911518 0.126503174508553 0.0619992460823357
AT2G37340_at 8.94140701424637 9.0916687610004 9.39100523254026 9.29151257748663 9.57695471775276 9.75332533414854 9.02736834826582 9.2899801980774 9.46560966610258 9.28453054326368 9.42432757558053 9.21587884269384 9.57216790760058 9.42334382458355 9.21393135771837 9.26318449689279 9.1776010848757 9.20648282355548 9.67071561208095 0.092655226529007 0.0900764379503827 0.0911652292777686 0.0935556719733202 0.091736113111339 0.0959720852287128 0.0900923466536664 0.0897366640976386 0.100201460162195 0.0919966474777843 0.0888518209512035 0.0908923330710997 0.091176585032479 0.0967248527717042 0.0888613725659664 0.0902821148387076 0.101052902090788 0.0955131714242589 0.0897815272457015 2 2 - 15677477 15678197 15677740.909 15677226 15679779 - gene protein_coding_gene FALSE TRUE AT2G37340.1|AT2G37340.2|AT2G37340.3 RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33); nucleic acid binding / nucleotide binding / zinc ion binding|RSZ33 (Arginine/serine-rich Zinc knuckle-containing protein 33); nucleic acid binding / zinc ion binding encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks. similar to RSZ32, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G53500.2); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to RSZ32, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G53500.2); similar to Os01g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042066.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878)|similar to RSZ32, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G53500.2); similar to Os01g0155600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042066.1); similar to alternative splicing regulator [Triticum aestivum] (GB:AAY84873.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.127044758561541 1.57960287476875 0.15105981405399 1 1.90799059170146 18.6882694461081 0.127044758561541 0.0630044853679742
AT4G10330_at 6.85046342973179 6.91414747626712 6.94034823668917 6.77312836295322 7.50895166030784 7.19967218414534 7.29315888551287 7.5085190374877 7.03885565929482 6.894787537263 6.64030362007193 6.57634666771389 6.4811816007439 6.55774606949353 6.47331260859595 7.10353244847665 7.1632289855027 6.76679964098962 6.91547111223627 0.173803981096153 0.172766968164676 0.17024993166545 0.177979023871843 0.177189421858569 0.173453591965356 0.185936387910252 0.179041468587643 0.175286912828057 0.177060681780187 0.182011552602389 0.176563270418366 0.175454366061707 0.180928858715732 0.181997589405403 0.176611481440887 0.173573055487699 0.182266048253199 0.17336878249086 4 4|0 +|/ 6406584 6406910 6406779 6406537 6407773 + gene protein_coding_gene FALSE TRUE AT4G10330.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G66820.1); similar to hypothetical protein Bpse110_02000371 [Burkholderia pseudomallei 1106b] (GB:ZP_00897669.1); similar to Os11g0242700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067592.1); similar to hypothetical protein Bpse4_03000890 [Burkholderia pseudomallei 406e] (GB:ZP_01336410.1) -0.132722705312740 -1.57951375103346 0.151080146111242 1 1.90787873221892 13.9585542715352 -0.132722705312740 0.0721975955057823
AT3G25910_at 8.63386471057284 9.0221046828098 8.70090875839612 8.78843359556978 9.1775582505825 9.0967230123694 8.37013769412336 8.62227381679289 8.45452430107928 8.8570663771369 8.75672739697741 8.93044002390904 8.76348023073216 8.89380914157658 8.44505442564051 8.99542822811484 8.58482841734563 8.71163102599273 8.96670515426559 0.12747162890363 0.12347879311075 0.133647952178572 0.128752523809005 0.121618272997651 0.132003848319470 0.126505180144829 0.129782317208087 0.145841166528819 0.124777409182244 0.126437112464651 0.123465870832739 0.127291259581651 0.124196523552788 0.123410676926058 0.123364869992674 0.142913110446340 0.12381339221319 0.125427823989111 3 3 + 9491643 9492119 9491878.182 9490458 9492367 + gene protein_coding_gene FALSE TRUE AT3G25910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24740.2); similar to TRAF-like [Medicago truncatula] (GB:ABE92615.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.139776797640127 1.57890500847307 0.151219086377009 1 1.90711478288898 17.5613039678754 0.139776797640127 0.0827226333531714
AT2G25210_at 6.98600576701502 7.33975969463261 6.44305770290628 6.56332696872999 6.52028565388677 6.43414854717077 6.72280298645906 6.99456154729065 6.47984035067092 6.34672864814628 6.868538573504 7.47228712702409 6.4549940087015 6.61694180699904 7.57143049790722 6.40638845335505 6.3190437959326 6.22702550958152 6.66954632574363 0.13523296296075 0.133235323838764 0.132115579233552 0.136029898195994 0.130301290442841 0.132710454312437 0.135280199807097 0.129917754457360 0.133508862635379 0.130193204457897 0.139006673522643 0.131370285378353 0.132427975381026 0.133889181188297 0.132087731292919 0.130008387535010 0.136962983008805 0.128965802071866 0.128355368047700 2 2 + 10747262 10747434 10747410.182 10746934 10747631 + gene protein_coding_gene FALSE TRUE AT2G25210.1 60S ribosomal protein L39 (RPL39A) Identical to 60S ribosomal protein L39-1 (RPL39C) [Arabidopsis Thaliana] (GB:P51424;GB:Q541X1;GB:Q93VI7;GB:Q9SIS1); similar to 60S ribosomal protein L39 (RPL39C) [Arabidopsis thaliana] (TAIR:AT4G31985.1); similar to putative 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD19088.1); similar to 60S ribosomal protein L39 [Oryza sativa (japonica cultivar-group)] (GB:BAD72315.1); similar to Os02g0796900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048392.1); contains InterPro domain Ribosomal protein L39e; (InterPro:IPR000077) -0.138600833618598 -1.57658940951028 0.151748655924162 1 1.9042101549039 13.3708867734177 -0.138600833618598 0.0813317989311212
AT3G48860_at 7.10878224551076 7.28803912140053 6.82199062489842 7.06731937864151 6.9158227710672 7.34633221314313 6.46945419415459 6.52946018833855 7.01430776428445 6.35048811082975 6.09025442294488 6.25174561471937 6.23186792468167 6.37016081192234 6.0269607031111 6.43451376158037 6.34344131669563 6.58961571908944 6.95566777280618 0.202886123437004 0.204923500101899 0.202537963507300 0.202428682554525 0.206239434539003 0.213997506212907 0.197475682258902 0.203090549551784 0.220777805797533 0.197821713515017 0.200864889240352 0.199377161257365 0.210190793399719 0.202732588563067 0.210580916200736 0.199439104521212 0.213717409935150 0.205273439655955 0.200091140476532 3 3|0 +|/ 18131506 18132814 18132370.5 18128471 18133076 + gene protein_coding_gene FALSE TRUE AT3G48860.1|AT3G48860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23700.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA93965.1); similar to Os01g0928100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045273.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598) -0.146117769355286 -1.57657925802457 0.151750981212525 1 1.90419742589796 13.4763040506359 -0.146117769355286 0.0917774528389204
AT2G36930_at 9.18177509949817 9.2641098583236 8.63158282740932 8.81339380540175 9.59522897448453 9.30918079015555 8.84100507754051 8.94843100305124 8.57897360687416 8.42891120398539 8.41782984744627 8.5309789952153 8.35573996429846 8.50051054194412 8.402840871096 8.22315086076723 7.98704295333214 8.19381643749159 8.8182219066137 0.131133919117456 0.131443402581543 0.128263178396723 0.124201087874479 0.124432729796671 0.133370869383782 0.120828133715184 0.127389372836556 0.131940919151343 0.125515234310308 0.12660380670613 0.129066462829052 0.128932171713509 0.124956883777076 0.124269581789395 0.128150869527416 0.132369918234382 0.122056042573888 0.127050731284866 2 2|0 -|/ 15517081 15518365 15517845.222 15516977 15518593 - gene protein_coding_gene FALSE TRUE AT2G36930.1 zinc finger (C2H2 type) family protein similar to Os08g0564500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062531.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD12942.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.126848545224726 -1.57603577752039 0.151875517193869 1 1.90351601329347 17.5406839535364 -0.126848545224726 0.0631585839041837
AT3G29200_at 5.56368549044579 5.91856227804595 6.03880081262549 6.36980426028215 5.36831022820741 5.76210996315127 7.31078233619107 7.71665772899987 6.76402584662379 7.06066826709193 7.34766964604292 7.27895304729262 6.90459393560257 7.40518998737821 7.68944286201046 7.45733935381736 7.07558084067889 7.15096525068846 6.87033085523392 0.19037695161714 0.187827795989939 0.185065621973546 0.189669129134343 0.194653855618911 0.195608996668918 0.190592565084610 0.185669533778864 0.191103659451130 0.184977292821658 0.183454112701173 0.184831727137200 0.185101710431074 0.192120467161504 0.188978047115915 0.186959017484787 0.189522152891315 0.185228705489642 0.188436640111165 3 0|3 /|- 11165892 11166746 11166329 11165630 11167653 - gene protein_coding_gene FALSE TRUE AT3G29200.1 CM1 (chorismate mutase 1); chorismate mutase L-ascorbate peroxidase Identical to Chorismate mutase, chloroplast precursor (EC 5.4.99.5) (CM-1) (CM1) [Arabidopsis Thaliana] (GB:P42738;GB:Q9LS75;GB:Q9SUJ5); similar to CM3 (CHORISMATE MUTASE 3), chorismate mutase [Arabidopsis thaliana] (TAIR:AT1G69370.1); similar to putative chorismate mutase [Fagus sylvatica] (GB:ABA54871.1); contains InterPro domain Chorismate mutase; (InterPro:IPR002701); contains InterPro domain Chorismate mutase of the AroQ class, eukaryotic type; (InterPro:IPR008238) -0.176145216615849 -1.57560037624310 0.151975353821819 1 1.90297019580210 13.3496183981214 -0.176145216615849 0.128959272159786
AT4G20850_at 10.4878934632061 10.4784133165826 10.6266935522777 10.5242254002853 10.5491426956961 10.3018138488929 10.3086975355086 10.4023200037106 10.570485088625 10.8348532497818 10.4597031954152 10.4651919342359 10.2849467108783 10.4420437924281 10.1969247800952 10.6968271557925 10.2517289299727 10.4058924472616 10.7543929911356 0.0977520646571012 0.0960964515739125 0.0991583029682563 0.0945693397433742 0.0918879943028493 0.0996579045854082 0.0952431412509428 0.0959516247767374 0.0982329792588336 0.093758149301715 0.0994677752344375 0.0947738008121756 0.0976512076657076 0.092840693132074 0.097544702042947 0.0949912763696872 0.0999580122553907 0.0938214206063625 0.096380877616704 4 4 - 11160959 11162215 11161490.545 11160732 11169900 - gene protein_coding_gene FALSE TRUE AT4G20850.1 TPP2 (TRIPEPTIDYL PEPTIDASE II); subtilase Tripeptidyl Peptidase II. Ser protease that assembles into a large oligomeric complex containing two proteins of 153 and 142 kD that are derived from a single TPP2 gene, with the smaller version missing part of the C-terminal end. Not essential, based on the lack of phenotype of a T-DNA disruption mutant. similar to putative tripeptidyl peptidase II [Oryza sativa (japonica cultivar-group)] (GB:BAD28384.1); similar to MGC83244 protein [Xenopus laevis] (GB:AAH71158.1); similar to tripeptidyl peptidase II [Homo sapiens] (GB:CAH72178.1); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209) -0.119182640192399 -1.57492093078744 0.152131267518419 1 1.9021185983943 21.0200588827404 -0.119182640192399 0.0491079986539208
AT3G01320_at 6.95420998654903 7.27839396491622 7.31467359000528 7.2483730270767 7.60027745408034 7.44630542978735 7.25069021546122 7.00191538560492 6.92302326875088 6.80938450152926 6.30691117897627 6.33646801559529 6.03426756824356 6.29922866827362 5.76551268814469 6.71563975881771 6.60584526236226 6.03862674777693 6.70886229251935 0.168863523830698 0.168172063399306 0.173002772050075 0.175959448672250 0.168439189985417 0.172096302482316 0.175009793812984 0.168396016238440 0.190503729854782 0.167168190915428 0.167168190915428 0.168784598711896 0.174929815648198 0.172252923808498 0.173683078492070 0.167168190915428 0.171586485235662 0.181427848201937 0.175003573938900 3 3|0 +|/ 112221 113080 112518.7 106662 113625 + gene protein_coding_gene FALSE TRUE AT3G01320.1 similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15020.1); similar to transcriptional repressor protein-related [Musa balbisiana] (GB:ABF70137.1); similar to paired amphipathic helix repeat-containing protein / transcription regulator-related [Musa acuminata] (GB:ABF70056.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE86951.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) -0.134919607235734 -1.57259605592384 0.152665852671167 1 1.89920607990498 13.8001394684969 -0.134919607235734 0.0764359778084938
AT1G58100_at 5.52544211229239 4.94551530918025 4.87054088489379 4.9913922931705 5.20110969620787 5.30554257714988 3.77065017582053 4.59649517839981 4.72651311325194 4.80720108389704 5.18145981931638 4.92007618828386 4.8580614331047 4.76251840508856 4.69741150008447 5.19050435060011 4.81418039376819 4.64127401234883 4.9483646783453 0.185543081397210 0.186815365729246 0.189459893076766 0.200583089674247 0.187507808262188 0.190049251265846 0.212884729624563 0.189677561617051 0.192770392637718 0.194820689355745 0.192303541767837 0.185543081397210 0.190986883302611 0.196398092646817 0.193203132933390 0.189161397625209 0.185543081397210 0.198676259904438 0.187060750087856 1 1 - 21516467 21516820 21516626.182 21516049 21517687 - gene protein_coding_gene FALSE TRUE AT1G58100.1|AT1G58100.2 TCP family transcription factor, putative similar to TCP family transcription factor, putative [Arabidopsis thaliana] (TAIR:AT1G72010.1); similar to TCP transcription factor [Medicago truncatula] (GB:ABE87744.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.219223403295948 1.57126992915081 0.152971541943170 1 1.89754573780187 9.75610872238395 0.219223403295948 0.176807872124171
AT3G14067_at 10.2989446964141 10.6260920599815 11.0410674409906 11.2239211040748 10.9994216293872 11.0876495472297 11.3545169136888 11.3696363113067 10.7650552440525 10.7788080220433 10.8343483672252 10.5293638494913 11.1891298043511 10.7505428536478 10.2096382091126 11.3057243186781 11.2808504988671 10.7672313434121 10.7871821726723 0.0915524206171477 0.0891961448953868 0.0898771936861665 0.0916023078046835 0.0891961448953868 0.0905650420008339 0.089941441537223 0.0898731309589784 0.0958700393334088 0.0899814568101488 0.0891961448953868 0.0901877522225029 0.09003466847805 0.0913113984604568 0.09115129182247 0.0891961448953868 0.0915594473949547 0.0911608510010528 0.0965565927361198 3 3 - 4658761 4659049 4658897.7 4658205 4660791 - gene protein_coding_gene FALSE TRUE AT3G14067.1 subtilase family protein similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to SBT1 [Solanum lycopersicum] (GB:CAA67429.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.128527972207474 1.57070792984994 0.153101256311014 1 1.89684231680335 21.8178406138113 0.128527972207474 0.0666818988691782
AT1G20810_at 8.30490479710313 8.04225519532259 8.11892456825243 7.93323208646643 8.2639578763519 8.3319867419209 8.78141331014935 8.50942891522324 8.15203788734018 8.3712073108199 9.02547853782265 9.11106148177486 8.54996588593056 8.66303237026106 9.30002281212887 8.89368684694196 8.56676419944476 8.6262585701511 8.46344927045037 0.133958992993354 0.125164028179168 0.126420594498146 0.133919624527569 0.135196074116791 0.13166949936707 0.134989498305988 0.134574072047924 0.146061449566907 0.135774576998684 0.132561936943992 0.131275874706226 0.139793612917607 0.133057762200762 0.136136033238121 0.130285119800398 0.134818194030442 0.129043661058647 0.131090511621267 1 1|0 +|/ 7232158 7233120 7232615.286 7231995 7233555 + gene protein_coding_gene FALSE TRUE AT1G20810.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 1, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) [Arabidopsis Thaliana] (GB:Q9LM71); similar to immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative [Arabidopsis thaliana] (TAIR:AT3G10060.1); similar to Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] (GB:ABE83244.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) 0.132830222825918 1.56814542307352 0.153693962049310 1 1.89363660848495 16.8712289334790 0.132830222825918 0.0738418286095834
AT1G16500_at 5.77281525483495 5.67474762987571 5.65651325672463 6.13131304544252 4.99993100498163 4.95783403933904 3.71457640679491 4.25132839721905 5.57403888419425 4.56877027483618 4.74454988348616 4.86960829611117 4.20937674084524 4.41191023669741 4.91326096935879 4.64783027794728 3.94768890465250 5.17474818145357 4.41775994193733 0.274518559006971 0.283968489003962 0.276849254420551 0.282134789277933 0.277059601899736 0.2912437361511 0.274602731861391 0.272976959468021 0.287404606556569 0.277456738718000 0.276482804615396 0.271013264791951 0.283973559723332 0.288060894555018 0.271708601662874 0.271013264791951 0.283586905784539 0.275710548925806 0.273177105032573 1 1 + 5639255 5639915 5639660.727 5639025 5640166 + gene protein_coding_gene FALSE TRUE AT1G16500.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79160.1); similar to H0313F03.6 [Oryza sativa (indica cultivar-group)] (GB:CAH68335.1); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) 0.172189783551946 1.56763859306943 0.153811435886359 1 1.89300287861484 9.87907973938902 0.172189783551946 0.125381292941742
AT3G58010_at 8.3473604577748 8.39724579588537 8.36019190085296 8.1547509061656 8.83734483178719 8.39435201508875 8.87649082593409 8.86508003532795 8.80458386879752 8.74784654038207 8.53057798556596 8.7098905190953 8.45920289485861 8.5622996518519 8.39711873687325 8.61066917808927 8.36049982941048 8.82025396846006 8.40398527405937 0.144951883875382 0.141715046549091 0.150794919108451 0.149544324649463 0.145808706991141 0.147742740306931 0.150766283148185 0.146333630272803 0.153640664343759 0.140455781176985 0.145836935026047 0.140041848274961 0.136301019892548 0.151524122123569 0.161895159902425 0.136301019892548 0.148163360602218 0.142221637276858 0.138796285328676 3 3|0 -|/ 21486955 21487769 21487391.333 21486782 21488546 - gene protein_coding_gene FALSE TRUE AT3G58010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42130.4); similar to Os04g0665800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054180.1); similar to unknown [Vitis pseudoreticulata] (GB:ABC69760.1) -0.140354415405492 -1.56760219303326 0.153819875853343 1 1.89295736878766 17.1333284244047 -0.140354415405492 0.0849674416354439
AT3G28850_at 4.6212633492385 5.39735482637444 5.37237521736156 5.53641766918469 5.12760853295865 5.00019319422745 4.16419638238937 4.44934510896427 4.44889429710566 4.80962629089072 4.32198208559279 4.1077234108741 4.50007048468986 4.63106455710167 4.20822238397933 4.25443120341326 4.70696679725926 4.67572069677157 4.67243566074512 0.205270407827989 0.214425323293145 0.207112605620890 0.209282146265588 0.207553883339017 0.20999448909359 0.201328238876633 0.209236350396722 0.208433588431383 0.207498116144550 0.200962845512382 0.206402091069859 0.205889377480456 0.211315036723713 0.205227632771886 0.200962845512382 0.200962845512382 0.202458784087718 0.210772817741801 3 3 + 10850595 10851168 10850939.273 10849906 10851359 + gene protein_coding_gene FALSE TRUE AT3G28850.1 glutaredoxin family protein similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT5G39865.1); similar to Glutaredoxin [Medicago truncatula] (GB:ABD32222.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.191614678118918 1.56747524024896 0.153849315277021 1 1.89279864792203 9.4933066777744 0.191614678118918 0.147530737214796
AT4G32440_at 5.29312234013717 5.61885790834579 5.61297081616213 5.63234086047504 5.80668580608905 6.09429600623098 5.20457626572035 5.03965094195545 5.33223795712354 4.75548655425326 5.24181566189594 4.67132989597111 4.9543893662469 5.38851177722972 4.35856479020458 5.27067771797043 4.78439734181776 4.60605515778681 5.31066065452097 0.260230120187590 0.246894951437180 0.242445525877734 0.243761535205551 0.243201158285657 0.264380826206219 0.244011067806087 0.265256133981101 0.260898728662137 0.241295365202367 0.251296527835032 0.241295365202367 0.241295365202367 0.247694199275161 0.245762397194455 0.248978467124731 0.264340436151869 0.243987508231682 0.245043306027464 4 4 + 15658176 15658674 15658449.182 15656691 15660229 + gene protein_coding_gene FALSE TRUE AT4G32440.1|AT4G32440.2 agenet domain-containing protein similar to agenet domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25590.1); similar to Agenet [Medicago truncatula] (GB:ABE92607.1); contains InterPro domain Agenet; (InterPro:IPR008395); contains InterPro domain ENT; (InterPro:IPR005491) 0.137097083270379 1.56597090084613 0.154198546956179 1 1.89091837061664 10.5589440026093 0.137097083270379 0.0805027619796843
AT1G75980_at 5.18274872907097 5.04834347173928 4.91129754736433 4.47439818945317 5.99768042263064 4.5346110840006 6.50005497807327 5.3412807584319 4.61553365742428 4.56099248796942 4.27454781989225 4.42429974345203 4.37462020600747 4.61056304480424 4.54257595898156 4.45989531407786 4.56413886703043 4.16528284804953 4.73639368499275 0.244581113922059 0.233888233542552 0.243562091191165 0.243925711583970 0.242985884338184 0.243116350019430 0.243408588237487 0.234954398777478 0.264238155250198 0.232615598598345 0.237619962501380 0.236881279648647 0.237513966311828 0.232692129204833 0.241797095869597 0.241597156942269 0.248930200316227 0.249139787441082 0.232615598598345 1 1|0 -|/ 28527032 28527763 28527437.8 28526215 28527998 - gene protein_coding_gene FALSE TRUE AT1G75980.1 similar to Os02g0120400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045709.1); similar to ENSANGP00000021928 [Anopheles gambiae str. PEST] (GB:XP_312490.2); contains InterPro domain Single hybrid motif; (InterPro:IPR011053) -0.374629820820950 -1.56588352389786 0.154218853382342 1 1.89080918638528 9.78111710697005 -0.374629820820950 0.332529631921688
AT2G22980_at 10.0072861778182 9.86467631728868 9.686724854964 9.56046097220546 10.5484286617292 10.2702588427239 9.92019698623272 9.58136994811831 10.1854893578258 10.6933589999820 10.3812961046763 9.90552646927163 10.3256096403163 10.2215852263495 9.7768911643758 10.3664961206674 10.0779758740325 9.80602788804122 10.7948093420034 0.0945112815159316 0.0931573663157352 0.0968003811612657 0.104650257994263 0.0932146299690479 0.091981807456305 0.0923497263045178 0.0935671485650883 0.106298792124953 0.0939440146868138 0.093218022020391 0.0918794063286157 0.0975845942589673 0.102382501212561 0.0960576896636572 0.0925033329590871 0.0943592080434513 0.0976069552435918 0.0927954104273686 2 2|0 +|/ 9788106 9790130 9789159.8 9785957 9790331 + gene protein_coding_gene FALSE TRUE AT2G22980.1|AT2G22980.2|AT2G22980.3|AT2G22980.4 SCPL13; serine carboxypeptidase|SCPL13 similar to SCPL7, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G10450.1); similar to SCPL11, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22970.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SNG1 (SINAPOYLGLUCOSE 1), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22990.3); similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) -0.138561931714788 -1.56523253823483 0.154370218400157 1 1.88999582793493 20.2627063255867 -0.138561931714788 0.0827162102034457
AT2G17265_at 8.44350186360015 8.70637744649365 8.43108669093877 8.4947146053972 8.671044197325 8.53033830925032 8.78980173379685 8.83928260736227 7.44541733903077 8.64550939086566 8.6388383192805 8.5707184314327 8.53150432044868 8.43012082969641 8.28171071318542 8.4972199596688 8.47514510493056 8.36717977853896 8.11871629220637 0.14278161058434 0.147822245264848 0.145276539929267 0.147290029214809 0.144386315999223 0.151556985246774 0.150583345606898 0.14278161058434 0.164527837083789 0.151469417218995 0.145168703415284 0.143715073624497 0.145795420411650 0.156742264671332 0.161110442713206 0.145676891379562 0.149916834210487 0.145638466065255 0.153734138307681 2 2 + 7516240 7516770 7516464.273 7515670 7516837 + gene protein_coding_gene FALSE TRUE AT2G17265.1 HSK (HOMOSERINE KINASE); homoserine kinase Encodes a homoserine kinase (HSK) which produces O-phospho-L-homoserine (HserP), a compound at the branching point of methionine and threonine biosynthesis. HSK is found in the stromal fraction of chloroplasts. similar to homoserine kinase, putative / HSK, putative [Arabidopsis thaliana] (TAIR:AT4G35295.1); similar to Os02g0831800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048623.1); similar to homoserine kinase [Solanum tuberosum] (GB:CAI65950.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Homoserine kinase; (InterPro:IPR000870); contains InterPro domain GHMP kinase, ATP-binding region; (InterPro:IPR006203); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.120614356347378 1.56511874964931 0.154396689865843 1 1.88985367531623 16.8852362765282 0.120614356347378 0.053450808643114
AT1G05520_at 6.40386125592698 6.62439969636513 6.35227525057886 6.7606494237296 6.45108607268426 5.95755647165031 6.32376644602666 6.82856189877156 5.43258247102467 4.79367189547702 5.10051867201696 5.91679708454664 5.33405452730608 5.54767304832671 5.40569815941787 5.74548522537413 5.00821502956761 6.20168844681821 4.73732410834556 0.284496334715675 0.271939473439143 0.281201750116577 0.274697985580222 0.267874104336898 0.285991890918641 0.28482247675942 0.270267470973643 0.283548692013187 0.270829806675668 0.28324339561997 0.276694151150506 0.277637707871756 0.27313324822918 0.275679307963122 0.270372066753473 0.290916764884814 0.282142858515996 0.269780580103984 1 1|0 -|/ 1631147 1631974 1631669.1 1630899 1635710 - gene protein_coding_gene FALSE TRUE AT1G05520.1 transport protein, putative similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT4G14160.2); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT2G21630.1); similar to transport protein, putative [Arabidopsis thaliana] (TAIR:AT3G23660.1); similar to At1g05520/T25N20_16 [Oryza sativa (japonica cultivar-group)] (GB:AAX96396.1); similar to Vesicle coat complex COPII, subunit SEC23 (ISS) [Ostreococcus tauri] (GB:CAL55059.1); similar to hypothetical protein UM01624.1 [Ustilago maydis 521] (GB:XP_757771.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896); contains InterPro domain Gelsolin region; (InterPro:IPR007123); contains InterPro domain Sec23/Sec24 helical region; (InterPro:IPR006900) 0.189950631472101 1.56357462792433 0.154756314134181 1 1.88792517531211 11.7229574473604 0.189950631472101 0.146207799555985
AT1G08480_at 9.76052270762172 9.71408715623414 9.95913931659346 9.81541262743645 9.93893694901885 9.54855793723438 9.77761482422216 9.69103654628478 9.56905908407082 9.52037123285257 9.70493649138187 9.79101736020647 9.59576582480081 9.6852159507628 9.67446952437495 9.6347044873613 9.61567719902203 9.7325912845331 9.39243902091227 0.0947339645234022 0.0950279561000728 0.102362916891884 0.097251857100351 0.0957932208351524 0.103530301542303 0.100351858084473 0.0979531313426334 0.098690053732859 0.0945135617556218 0.0940537619817092 0.0942090891601725 0.0935659776885744 0.0978261698127545 0.093551901206322 0.0944385754137481 0.100425279491607 0.0947203748872123 0.0966792624246148 1 1|0 +|/ 2684344 2685372 2684962.7 2684237 2685624 + gene protein_coding_gene FALSE TRUE AT1G08480.1 similar to hypothetical protein 13 [Plantago major] (GB:CAJ34821.1) 0.132518609170142 1.56347982197961 0.154778418871157 1 1.88780680116588 19.3622903637061 0.132518609170142 0.0739705338927782
AT3G12480_at 7.6502967940751 7.2424939960725 7.26044629780003 7.28463464497983 7.5137140864382 7.21637123661106 7.35573308479509 7.35132092840621 7.17366446099354 6.63299604539522 7.06705158913294 6.64084028682987 6.75156092511913 7.14095535707362 6.40826649000219 7.1182068029017 6.51189414916277 6.60791521312021 7.1426965225454 0.199368414130234 0.209960369978375 0.199196936555652 0.196425680123508 0.212286468852397 0.209673435973987 0.210214817818211 0.204093942269172 0.208165585889974 0.198245503935584 0.208513880136959 0.196972069082455 0.201305009854713 0.206372374748411 0.202284957107655 0.195194460381779 0.200712889764598 0.200324491947904 0.204268557288802 3 3 + 3959526 3960214 3960013.364 3957784 3960479 + gene protein_coding_gene FALSE TRUE AT3G12480.1 transcription factor, putative similar to repressor protein-related [Arabidopsis thaliana] (TAIR:AT5G19490.1); similar to At3g12480-like protein [Boechera stricta] (GB:ABB89765.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor CBF/NF-Y/archaeal histone; (InterPro:IPR003958); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.141726146178432 -1.56322690475248 0.154837402368691 1 1.88749102823945 14.2413540643035 -0.141726146178432 0.0874432108891428
AT3G59490_at 5.18981242959017 5.4123481504023 5.69527336936724 5.04374148265622 5.69275835784407 5.65146122874702 5.33999875111126 5.32295981315558 3.73549438600679 4.35961048537017 4.43374390284379 4.14332192167352 3.97506526604125 4.44346604692536 4.19203425144529 4.62030591209206 4.73136079615895 4.0559250039862 4.49189609541013 0.218336392983449 0.219101432795346 0.220035716667710 0.221827575728918 0.220310237452517 0.228195449106274 0.220563779420925 0.221173083968994 0.238558711341809 0.225882422227919 0.224085538613023 0.225710902448020 0.221121286530506 0.222788101244831 0.217761368240417 0.219351446301865 0.221616637250485 0.222556524737443 0.219564980981802 3 3|0 -|/ 21996002 21996731 21996351.6 21995608 21997328 - gene protein_coding_gene FALSE TRUE AT3G59490.1 similar to Os09g0515300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063666.1) 0.166632361152791 1.56290243152596 0.154913103239702 1 1.88708595445519 9.67857913614665 0.166632361152791 0.119396647625377
AT1G17370_at 8.53535158790452 8.2518412945769 8.45479388536818 8.47047782789555 8.29315104923313 8.48485317282142 9.0040978719976 8.97796666277296 8.0938830967423 8.51143205180302 9.12149143438406 8.6924775048716 9.24831446611928 9.03153858317608 8.61809319124599 9.06439862105854 9.23897950248032 8.24884907995951 8.5773776805991 0.135488434716154 0.135927232190609 0.138974886290390 0.132414508644172 0.130747186619718 0.141198630406296 0.134758787585657 0.133958150844363 0.159289852288559 0.139955806317345 0.136822506295531 0.137379004245273 0.1341697329456 0.142661573983896 0.134303261992126 0.131312446465113 0.147332927108054 0.147830301863827 0.137660217723754 1 0|1 /|- 5951855 5952355 5952098.667 5951535 5955030 - gene protein_coding_gene FALSE TRUE AT1G17370.1 UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B); mRNA 3'-UTR binding similar to oligouridylate-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G14100.1); similar to UBP1A, mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G54080.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.123645742190178 1.56250720492020 0.155005356119554 1 1.88659261023061 17.2101910395513 0.123645742190178 0.0594604887355339
AT2G33730_at 9.47799950389745 9.54557860170435 9.27426745193433 9.5961535253209 9.1868469388256 9.09200272644891 8.99956104479622 9.03724772113247 8.86768327423902 8.27556506784247 8.2002596086293 8.20773340050143 8.15119677579454 8.27066292994182 8.09687908406179 8.41221389169986 8.50057264722846 8.17960766326923 8.42265552380752 0.154718969102465 0.157046241812001 0.149320119234807 0.151760648409428 0.149972823169219 0.149025458194171 0.150869036452246 0.152224191015313 0.156170660731955 0.153371559058264 0.155680852538557 0.154073440113296 0.156254519519713 0.154727963669017 0.155125868015089 0.150785831155797 0.149025458194171 0.150719966443523 0.158641825754257 2 2 - 14272769 14273328 14272990.091 14272526 14275048 - gene protein_coding_gene FALSE TRUE AT2G33730.1 DEAD box RNA helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 21 (EC 3.6.1.-) (RH21) [Arabidopsis Thaliana] (GB:P93008); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to Putative DEAD-box ATP-dependent RNA helicase 44 (GB:Q9FZ92); similar to Hypothetical protein CBG09074 [Caenorhabditis briggsae] (GB:CAE64386.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE87919.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.123678131202857 -1.56196219571340 0.155132651955366 1 1.88591240412327 17.6633865419761 -0.123678131202857 0.0595954858446587
AT1G48430_at 7.20721151675353 6.94769112568608 7.14816318806657 7.15016802785687 8.085388200677 6.87648194015891 5.19353229533294 5.25951017860554 6.18346441631261 5.80275026215481 4.99965215020888 5.27463100103789 5.69538884849495 5.95361764800679 4.34953578112889 6.29142764426191 4.90733390083168 5.76769956923364 6.19373347737014 0.285129256160412 0.279660265661634 0.28604668311771 0.276883366507865 0.291947060694181 0.281254860186212 0.294276580170884 0.283328147520030 0.281450967617185 0.27572306277806 0.276235159469437 0.27572306277806 0.281483952699426 0.276092452930073 0.278069108030451 0.2801719938011 0.306193624262801 0.279601986639336 0.284836912451281 1 0|1 /|- 17906580 17907030 17906827.875 17906304 17910474 - gene protein_coding_gene FALSE TRUE AT1G48430.1 dihydroxyacetone kinase family protein similar to dihydroxyacetone kinase family protein [Arabidopsis thaliana] (TAIR:AT3G17770.1); similar to 3,4-dihydroxy-2-butanone kinase [Oryza sativa (japonica cultivar-group)] (GB:AAM47307.1); similar to 3,4-dihydroxy-2-butanone kinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98577.1); similar to Putative 3,4-dihydroxy-2-butanone kinase (GB:O04059); contains InterPro domain Dihydroxyacetone kinase; (InterPro:IPR012734); contains InterPro domain Dak phosphatase; (InterPro:IPR004007); contains InterPro domain Dak kinase; (InterPro:IPR004006) 0.253996079691688 1.56192162750398 0.155142131084289 1 1.88586177730193 12.4659650773987 0.253996079691688 0.214277894834694
AT4G14880_at 12.0581916031626 12.0235900714277 11.8926615932352 11.9170324187608 11.9102126919509 11.5294711906981 11.8888032628288 11.763789497228 11.0021822624375 11.8153856457618 11.9199114188142 11.7838749273574 11.7012041809397 11.7516518513799 11.8708918792836 11.7292528762465 11.6929856780414 11.8459412428046 11.4021541314111 0.0841282826778824 0.082933189604275 0.084929988565906 0.0841747543046916 0.0846021510134004 0.0957407997745406 0.0832948514872882 0.0866351478005429 0.1021360420213 0.0821632259389311 0.0861381924917973 0.0815570298162424 0.0854920535125198 0.088781480134291 0.0861401410611568 0.0815570298162424 0.0894552443115825 0.0921787802084645 0.0829809419117742 4 4|0 -|/ 8518207 8519353 8518860.625 8517955 8520464 - gene protein_coding_gene FALSE TRUE AT4G14880.1|AT4G14880.2 OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1) Encodes a cytosolic isoform of cytosolic O-acetylserine(thiol)lyase, a key enzyme in cysteine biosynthesis and for the fixation of inorganic sulfide. It catalyzes the formation of cysteine from O-acetylserine and inorganic sulfide. Gene expression is predominant in the root cortex and the xylem parenchyma. Gene expression is induced in leave, stems and roots by high salt and heavy metal stresses, mediated by ABA. Identical to Cysteine synthase (EC 2.5.1.47) (O-acetylserine sulfhydrylase) (O- acetylserine (Thiol)-lyase) (CSase A) (CS-A) (OAS-TL A) (Cys-3A) (At.OAS.5-8) (OASA1) [Arabidopsis Thaliana] (GB:P47998;GB:O23343;GB:Q42570;GB:Q94AS7); similar to OASC (O-ACETYLSERINE (THIOL) LYASE ISOFORM C), cysteine synthase [Arabidopsis thaliana] (TAIR:AT3G59760.3); similar to Cysteine synthase (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase) (OAS-TL) (OAS-TL4) (GB:O23733); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) 0.129570554327211 1.56050003564846 0.155474627956398 1 1.88408813882445 23.4697381761924 0.129570554327211 0.0697356048142503
AT2G40070_at 6.35823583161547 6.75827504494822 5.65650171277992 6.1207497457257 6.82359779086996 6.45174635067999 6.55126876525062 6.85705603746594 6.85979560383101 5.79447036140503 6.35724645107884 6.02539519630843 6.51318942538732 6.93243687687186 6.2989200959173 6.23260456784366 5.94807956161153 6.43252433942736 6.34625297116346 0.235206950481448 0.225155008367966 0.239506607486388 0.225594677612341 0.229769153214393 0.240845179848625 0.223086434621034 0.227465804140452 0.228012019948935 0.223086434621034 0.223232138509559 0.227053007231313 0.228459615549068 0.225141141371797 0.223086434621034 0.224922381149719 0.228460421723774 0.226082695963799 0.234862383492477 2 2 - 16735822 16736294 16736079.2 16735272 16738684 - gene protein_coding_gene FALSE TRUE AT2G40070.1|AT2G40070.2 similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT3G09000.1); similar to Os01g0141900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041987.1); similar to putative proteophosphoglycan [Oryza sativa (japonica cultivar-group)] (GB:BAD61066.1) -0.179508383816775 -1.56004488405263 0.155581218927728 1 1.88352044812169 12.7852068481365 -0.179508383816775 0.134864660301837
AT1G66750_at 5.53274453019528 5.62421838940811 5.57966450396335 5.76108313683532 6.22959325517224 6.6040881685032 6.33410353682969 6.26714350870392 4.73986216494675 5.69801780684706 4.81002233538211 4.55615175959749 5.22451232870921 4.8963521535215 4.69880755040979 5.18223560238166 5.51883065928344 5.07976795664064 5.65729352972687 0.192289342597364 0.199642533923698 0.198115956906472 0.193262598588384 0.192306477345283 0.202774747004339 0.189285359743486 0.199584562885393 0.209387178788921 0.195591822180726 0.190314884376082 0.192713411562713 0.195516585586865 0.201161283650066 0.195744884677354 0.190773695429809 0.20793181040299 0.194966758100467 0.19481331608592 1 1|0 +|/ 24900009 24900622 24900334.222 24898378 24900916 + gene protein_coding_gene FALSE TRUE AT1G66750.1 AT;CDKD;2/CAK4AT/CDKD1;2/CDKD;2 (CYCLIN-DEPENDENT KINASE D1;2); kinase/ protein binding / protein serine/threonine kinase similar to AT,CDKD,1/CAK3AT/CDKD1,1 (CYCLIN-DEPENDENT KINASE D1,1), kinase [Arabidopsis thaliana] (TAIR:AT1G73690.1); similar to CDK-activating kinase [Medicago sativa subsp. x varia] (GB:AAK97227.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.132584007882610 -1.55914465914187 0.155792234134812 1 1.88239788831047 11.1720263172419 -0.132584007882610 0.0746365871905635
AT4G00500_at 6.43039768801486 6.14094424503683 6.35816818129703 6.29971253952965 5.55526558232112 5.7192680288742 5.73637420289936 5.76206134124429 5.48527742212927 5.04551338934249 4.97667839924277 4.80321289255772 5.02443274963406 4.93705159986898 4.12227792166874 5.44020241855781 5.01683354344499 5.16681268180203 4.91110972037131 0.237240562229041 0.231765857003602 0.242142079610059 0.231765857003602 0.234762714326205 0.240634996226531 0.242860741162475 0.239485417628175 0.246775860119156 0.233256349677653 0.235424047793695 0.240102092065198 0.241845928464366 0.239603257486728 0.233115058970068 0.234805208299716 0.235354644209320 0.243505521049664 0.244616706393908 4 0|4 /|- 225286 226001 225640.9 225028 227396 - gene protein_coding_gene FALSE TRUE AT4G00500.1|AT4G00500.2 lipase class 3 family protein / calmodulin-binding heat-shock protein-related similar to lipase class 3 family protein / calmodulin-binding heat-shock protein, putative [Arabidopsis thaliana] (TAIR:AT3G49050.1); similar to calmodulin-binding heat shock protein [Gossypium hirsutum] (GB:AAV65493.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921); contains InterPro domain Lipase 3, N-terminal; (InterPro:IPR005592) -0.122851593863611 -1.55833817977546 0.155981493540514 1 1.88139251089451 11.0418929527162 -0.122851593863611 0.0586236535130385
ATCG00500_at 9.91775895672322 10.6538079248942 10.4295074066705 10.5867599374832 10.0348566528519 9.79990550616737 10.3740390781574 10.6017499883185 10.942863847841 10.6442643035158 11.3184888586183 11.6388091663127 11.3949993494861 11.3530440846159 11.3473952559266 11.4020903165717 10.8640904214363 10.9262382560005 10.6191598409988 0.0971820103176349 0.0919583930531483 0.103209042426509 0.0915317234080625 0.095714185346391 0.101800792253032 0.0965298572187648 0.0934988165172888 0.0995708772942445 0.092401086539601 0.0914881998114956 0.0935513260474429 0.0930886112267257 0.099792226718913 0.0916579400927723 0.09008355018983 0.0998972172569743 0.091372396195401 0.09008355018983 C C + 57955 58495 58256.545 57075 58541 + gene protein_coding_gene FALSE TRUE ATCG00500.1 Encodes the carboxytransferase beta subunit of the Acetyl-CoA carboxylase (ACCase) complex in plastids. This complex catalyzes the carboxylation of acetyl-CoA to produce malonyl-CoA, the first committed step in fatty acid synthesis. Identical to Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (EC 6.4.1.2) (ACCase beta chain) (accD) [Arabidopsis Thaliana] (GB:P56765); similar to Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta (ACCase beta chain) (GB:P48937); similar to acetyl-CoA carboxylase carboxyltransferase beta subunit [Nothofagus nitida] (GB:AAW70095.1); similar to acetyl-CoA carboxylase beta subunit [Nothofagus gunnii] (GB:AAT79506.1); contains InterPro domain Carboxyl transferase; (InterPro:IPR000022); contains InterPro domain Acetyl-coenzyme A carboxyltransferase, N-terminal; (InterPro:IPR011762); contains InterPro domain Acetyl-CoA carboxylase carboxyl transferase, beta subunit; (InterPro:IPR000438) 0.185566760802854 1.55808811049453 0.156040220148408 1 1.88108082278523 21.3078350786114 0.185566760802854 0.142026200012573
AT1G52590_at 8.16305841778787 8.78155497450232 8.59295262038237 8.59947398278248 8.53577480625988 8.04640550909335 9.07693714797572 9.41308402611143 8.30502412813516 8.2940812081427 7.90965942120294 8.03402370018702 8.04430883126504 8.3157986326281 7.93680247757702 8.75259003722605 8.08996392736831 8.00571642537034 7.7108142051181 0.203189056153388 0.194483279697643 0.208175259084173 0.207008223019303 0.195290561556416 0.214554210738546 0.201955677325319 0.198800339695428 0.205292189854587 0.201045715036614 0.19459169717517 0.199537250703267 0.199854598388122 0.193374353044521 0.199203998738281 0.193374353044521 0.217633931156715 0.200439857574254 0.205842462448388 1 1|0 -|/ 19592895 19593862 19593545.25 19592678 19593942 - gene protein_coding_gene FALSE TRUE AT1G52590.1 similar to RNase H domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G24090.1); similar to Putative thiol-disulphide oxidoreductase DCC [Medicago truncatula] (GB:ABD28717.1); contains InterPro domain Putative thiol-disulphide oxidoreductase DCC; (InterPro:IPR007263) -0.191102747080183 -1.55714313846705 0.156262318089270 1 1.87990323628236 16.7708624083128 -0.191102747080183 0.148369276800387
AT4G37210_at 7.0571138868483 7.00404334523772 6.5219155178177 6.82098043274501 6.66121371739039 6.75125420136981 6.91726627775499 7.06294956234082 5.08941786820895 5.76760328698874 5.63195804788191 5.89849095702612 5.97189263437151 5.42980218578606 5.69928064282874 5.69004431245715 5.65318617011802 5.44694352144503 5.95366329141816 0.201216706930992 0.19987008715385 0.201551686924913 0.199680849663046 0.202281329508685 0.198171394917449 0.198527214985213 0.200795412059306 0.21032466811299 0.203770510844313 0.198751228699077 0.197281364007059 0.201417863408866 0.22128217885926 0.198294330256968 0.196380686117051 0.230571170399417 0.205191402443412 0.202097248131452 4 4 + 17513836 17514391 17514085.636 17512253 17514619 + gene protein_coding_gene FALSE TRUE AT4G37210.1|AT4G37210.2 tetratricopeptide repeat (TPR)-containing protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC78589.1); similar to Os07g0122400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058793.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.123681986965350 -1.55671883172963 0.156362135789635 1 1.87937460222281 12.4902227632854 -0.123681986965350 0.0603430505470064
AT1G68600_at 10.2224393870910 10.4780725872418 10.5439885224886 10.5245568565744 10.5218681532359 10.0458895157622 11.2439497297711 11.0168823684512 9.5370022406169 10.6105828869978 10.8983488187888 10.6648732315825 11.0080730445305 10.7243973188831 10.4198452052988 11.2631776285979 10.6184289771490 10.6635051001675 10.2969040846439 0.104345371565188 0.104490937953632 0.103758643776030 0.104729739740190 0.110282934199197 0.114208409965207 0.105122341497714 0.108037209418524 0.123516434782624 0.103758643776030 0.103758643776030 0.103758643776030 0.106344525693526 0.103872417371781 0.105205973824272 0.106449527516313 0.115075355271782 0.108730985487769 0.105432434646010 1 1 + 25765843 25766408 25766163.727 25763505 25766597 + gene protein_coding_gene FALSE TRUE AT1G68600.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G25480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17470.1); similar to Putative expressed protein [Brassica oleracea] (GB:AAW81734.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.151578919374176 1.55662607416251 0.156383964535323 1 1.87925904761165 21.0400780082658 0.151578919374176 0.101475744799561
AT1G27290_at 8.56139655312977 9.13143788384147 8.79097503415934 8.9814863446974 9.72410022961657 9.19200198706086 8.42636101625249 8.75123714418343 8.94870064646552 8.65740240122619 8.77900742734952 8.49919151686944 9.0801301586089 9.08174698511506 7.67925658856579 8.86460518206927 8.63284442721518 8.50715306462597 8.52506427631551 0.123876494934178 0.116676098817065 0.124988726781922 0.129260932707398 0.122738224256088 0.136639203744944 0.119025843315607 0.112446903672056 0.129993553000878 0.116593601049638 0.118628521000074 0.121697841066266 0.118904124316242 0.117703489355232 0.131031776414187 0.114881665388681 0.122607355146504 0.124305045354480 0.122916378431694 1 1 + 9481810 9482130 9481999 9481519 9482899 + gene protein_coding_gene FALSE TRUE AT1G27290.1|AT1G27290.2 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92577.1); contains InterPro domain Penicillin-binding protein, transpeptidase fold; (InterPro:IPR012338) 0.192317780165867 1.55613552087627 0.156499452536083 1 1.87864799016565 17.6203150375201 0.192317780165867 0.149861213906860
AT3G58670_at 6.66652216299774 7.02187974916259 7.19292593536834 6.57801192497921 7.6889105996713 7.51764367686283 6.60313879252256 6.2505338993406 6.15461437522831 5.92890494885917 5.37333528912598 5.56107189369889 5.97000468638185 5.75608702703331 5.49379509019158 5.99636334283338 6.23262575214352 5.4907110404146 5.84277202476265 0.222309010267023 0.218419629269524 0.221364830358906 0.225478630728784 0.235166246748756 0.231340825653783 0.232146490252081 0.220733953017875 0.232296183527540 0.222160991536889 0.218247342326407 0.220182409263046 0.222915152800948 0.218479615421283 0.224589217053972 0.218247342326407 0.226265132436767 0.224811528008083 0.224375504869063 3 3 - 21715040 21715895 21715342.909 21714367 21717056 - gene protein_coding_gene FALSE TRUE AT3G58670.1|AT3G58670.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42670.1); similar to OSJNBb0040D15.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE04411.2); similar to Os04g0151900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052116.1); similar to H0820C10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65971.1); contains InterPro domain Protein of unknown function DUF1637; (InterPro:IPR012864); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.183836599412864 1.55572350613787 0.156596509867423 1 1.87813484120201 12.7947857000354 0.183836599412864 0.140383584195658
AT3G20570_at 5.69411326765508 6.07658278148995 4.4003602504983 4.98034761168832 4.51487779747982 5.01351633920569 6.05429451869977 6.60029430273552 5.32161260712965 4.56352514407774 6.35119879977777 7.33573047451127 5.47159433072027 5.59016080490279 6.75760116710567 6.56782381217399 5.43201044016002 5.55044983621799 5.66826022028493 0.291183362458738 0.276886216595220 0.288247350162597 0.280341759365236 0.286096731504287 0.301503668801218 0.276886216595220 0.284032246484959 0.286423216324957 0.277499225067070 0.286015751136889 0.27702450128393 0.281980962977192 0.294315141055928 0.289308841852754 0.2803828217539 0.295004803262182 0.286725480311985 0.276886216595220 3 3|0 -|/ 7186984 7187413 7187200.667 7186528 7187527 - gene protein_coding_gene FALSE TRUE AT3G20570.1 plastocyanin-like domain-containing protein similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G25090.1); similar to unknown [Brassica rapa] (GB:ABB97040.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.215720250114132 -1.55439548010273 0.156909717862743 1 1.87648131320138 11.0750669580284 -0.215720250114132 0.175582222826914
AT1G01620_at 10.7218033892183 10.7443760149280 10.6236692065795 10.6492280926166 11.2677292414745 11.0391812674669 11.6723610265666 11.6390605047331 11.5333382751547 11.3203546872920 12.5136299609481 12.1053388969954 12.1035233260463 11.9761525597615 12.1808977172184 11.8424452869887 11.4802021818749 11.9101275532836 11.6077717543173 0.0793475930674615 0.078023654644935 0.08174062108334 0.0822649396082388 0.0787371684724566 0.0784586121089823 0.0778870425650978 0.0797205524457845 0.084734068882133 0.0800611803981006 0.078409229990396 0.0777065064124553 0.0790369982870929 0.0810118520595925 0.0796285686609386 0.0777065064124553 0.0807146134532209 0.0801640086307008 0.0787486875598682 1 1|0 -|/ 225987 226633 226376.4 225665 227302 - gene protein_coding_gene FALSE TRUE AT1G01620.1|AT1G01620.2 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3); water channel|PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1;3) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. Identical to Aquaporin PIP1.3 (Plasma membrane intrinsic protein 1c) (PIP1c) (Transmembrane protein B) (TMP-B) (PIP1.3) [Arabidopsis Thaliana] (GB:Q08733;GB:Q8W4E5); similar to TMP-C (plasma membrane intrinsic protein 1,4), water channel [Arabidopsis thaliana] (TAIR:AT4G00430.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.113718248987236 1.55390426862308 0.157025709962537 1 1.87586989009514 22.7952733884368 0.113718248987236 0.0404021978355804
AT4G21560_at 7.28927345226638 7.6973672216493 7.44683844246643 7.25735006148344 8.1466397832857 7.39461221035771 7.1691838456396 7.00087116439744 6.94717954723646 6.26656397176793 6.72092429603995 6.49887263843016 6.76769828029827 6.7994875547957 6.26572361630219 6.9308176822826 6.36956431092899 6.69365300217974 6.31843498507908 0.201122061529478 0.203135973556101 0.213659500414666 0.224063037802405 0.213173077531130 0.212233652933871 0.205174292845431 0.210158119656797 0.216226543646778 0.201366597362088 0.201880666066867 0.199437267395587 0.209256786852177 0.206955792717625 0.200984895426525 0.202494929557459 0.224823160943329 0.202617605729988 0.201824219651551 4 4 - 11469052 11469550 11469280.091 11468773 11470545 - gene protein_coding_gene FALSE TRUE AT4G21560.1|AT4G21560.2|AT4G21560.3 vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein Identical to Vacuolar protein sorting-associated protein 28 homolog 2 [Arabidopsis Thaliana] (GB:O65421); similar to vacuolar protein sorting-associated protein 28 family protein / VPS28 family protein [Arabidopsis thaliana] (TAIR:AT4G05000.2); similar to hypothetical protein DDBDRAFT_0186436 [Dictyostelium discoideum AX4] (GB:XP_638318.1); similar to Os01g0781000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044441.1); contains InterPro domain Vacuolar protein sorting-associated, VPS28; (InterPro:IPR007143) 0.196151354019759 1.55384544100599 0.157039606368043 1 1.87579667261792 13.9960514430358 0.196151354019759 0.154428478446601
AT2G45100_at 4.94310550088067 5.15125287374239 5.00953373188056 4.7209482138103 5.29638069026014 4.91241274255911 5.37267238196938 5.50424046656188 5.60428382829924 5.62687094021673 5.33938420342994 6.02188465332794 5.60278113270755 5.75905167796339 5.68154892048057 5.69754415052685 5.30745659402631 5.49835776275900 5.70600889970156 0.217121449832078 0.216173399824987 0.234345107829385 0.222563497279401 0.217331148307122 0.232213513549705 0.216081363816713 0.223268577526366 0.220551656333761 0.216071486802055 0.223704127995881 0.211356900103512 0.214189483035124 0.21697135308936 0.211530483956822 0.211356900103512 0.228565314523079 0.217421524305361 0.220759440955006 2 2 - 18602488 18603245 18602805.889 18602423 18605513 - gene protein_coding_gene FALSE TRUE AT2G45100.1 RNA polymerase II transcription factor similar to RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT3G09360.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE92419.1); similar to Os05g0305100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055147.1); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Brf1-like TBP-binding; (InterPro:IPR011665); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) -0.145109523498769 -1.55274744288346 0.157299180906343 1 1.87443035631389 10.7434295050290 -0.145109523498769 0.093409206583955
AT1G67430_at 11.0805605730494 10.9850091676259 10.6433085246582 10.6124096784472 10.6217539372457 10.4601370735304 10.8421836497852 10.8289731253698 10.2236564651399 10.6320378807148 10.8247714344953 11.1046008476772 10.5663202295114 10.5336111687212 11.1283228192325 10.4161899664722 10.2703920075051 10.0790239873264 10.6052449371742 0.0857716568027147 0.0845007034223462 0.0891336765356932 0.0866211754484229 0.0845724532752495 0.0913420378529595 0.0861756873933225 0.0865013118165894 0.0909126875410312 0.0843794718513339 0.085024474708734 0.0854071585659168 0.0843794718513339 0.0881144127412224 0.0873593454757883 0.0850858030406565 0.0913845682193178 0.0869903205468184 0.0846652279313125 1 1|0 +|/ 25265995 25266969 25266616 25265822 25267452 + gene protein_coding_gene FALSE TRUE AT1G67430.1 60S ribosomal protein L17 (RPL17B) Identical to 60S ribosomal protein L17-2 (RPL17B) [Arabidopsis Thaliana] (GB:P51413;GB:O64803); similar to 60S ribosomal protein L17 (RPL17A) [Arabidopsis thaliana] (TAIR:AT1G27400.1); similar to ribosomal protein [Petunia x hybrida] (GB:AAL09401.1); contains InterPro domain Ribosomal protein L22/L17; (InterPro:IPR001063); contains InterPro domain Ribosomal protein L22/L17, eukaryotic and archaeal form; (InterPro:IPR005721) -0.110677514439584 -1.55023277273886 0.157895118269608 1 1.87130306518230 21.3104838755276 -0.110677514439584 0.033007353632725
AT4G02075_at 5.40847572734167 5.9999791971524 7.47392958602095 7.48574563015687 8.40129618938887 7.32144245385741 8.03352366156189 6.77843079456071 6.5713107153523 6.7192730703286 6.2750722408974 4.96355088336495 6.47736899980056 5.93124552339659 4.30636098709532 7.5677964732627 7.52843817665353 5.69548001671802 6.28345287814424 0.296906499223719 0.295657003652904 0.295593968080567 0.299107439303889 0.313418013342107 0.327612725678932 0.297864767640334 0.313810134057119 0.314981350170189 0.297164047443650 0.301357495941572 0.308946152979915 0.303034439874163 0.309531149690729 0.315195305978435 0.301267757565270 0.311065897132369 0.323350317559767 0.304189329078396 4 4|0 -|/ 913588 916304 914835.125 913419 916476 - gene protein_coding_gene FALSE TRUE AT4G02075.1 PIT1 (PITCHOUN 1); protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01275.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE78108.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.341993197204389 1.55023193550580 0.157895317017607 1 1.87130202442229 13.4217744303003 0.341993197204389 0.304269184803719
AT2G16460_at 4.52457058925464 4.84511592949808 5.13049760346046 4.96781346735111 5.37589661794135 4.71583348406518 5.58493648036962 5.42334580665106 4.44310031025761 4.64762923531815 5.16308951813803 4.72714830256151 4.79356731958083 4.91994527023204 5.04245545569074 5.01963914457258 4.95774633583786 4.55538975368229 4.39981766227594 0.20366695748486 0.20383282624737 0.205105320075888 0.200155347331097 0.205026175360984 0.205195794129258 0.213082600788101 0.206571921970457 0.206371396938920 0.202926792612002 0.200155347331097 0.200155347331097 0.204586954730562 0.200155347331097 0.203176206753154 0.205643284082909 0.213004891630136 0.22502323023394 0.201564532324607 2 2|0 -|/ 7140807 7142440 7141754.5 7140472 7142734 - gene protein_coding_gene FALSE TRUE AT2G16460.1|AT2G16460.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51090.1); similar to Os06g0713100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058564.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89621.1); contains InterPro domain Protein of unknown function DUF1640; (InterPro:IPR012439) 0.17677083000713 1.54994349754195 0.157963801715981 1 1.8709434861077 9.76811210073438 0.17677083000713 0.133039573461614
AT3G25230_at 6.89322411585043 7.22532565490354 6.02166987043542 6.5927347906858 7.06601194474686 5.98864151842705 7.78932572560156 7.87307751339322 6.23301220536459 6.44744028858294 7.16829052223936 7.42046743141709 6.75703787381608 6.75452155457603 6.75165986773143 6.92864150801435 6.68650294902227 6.57572219687751 6.41632778412405 0.194531486593565 0.193800262188477 0.201901495512292 0.194127639009825 0.207087382654462 0.193836053653392 0.193126069667319 0.199106897826685 0.197000886518840 0.199112231274095 0.190242701724981 0.201983234230912 0.197283562025214 0.202456247895401 0.210707645708660 0.190242701724981 0.211883756886508 0.204268172027141 0.202064122188399 3 3 + 9191283 9192008 9191649.455 9189418 9192656 + gene protein_coding_gene FALSE TRUE AT3G25230.1 ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase Encodes a a high molecular weight member of the FK506 binding protein (FKBP) family. It has three FKBP12-like domains, tetratricopeptide repeats, and a putative calmodulin binding domain. Identical to 70 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (Peptidylprolyl isomerase ROF1) (ROF1) [Arabidopsis Thaliana] (GB:Q38931;GB:Q38949;GB:Q9LSF3); similar to peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G48570.1); similar to peptidylprolyl isomerase [Triticum aestivum] (GB:CAA68913.1); similar to 70 kDa peptidyl-prolyl isomerase (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (GB:Q43207); similar to Os08g0525600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062292.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.256605829712748 -1.54860476208638 0.158282010702289 1 1.86927984654409 13.5542258487483 -0.256605829712748 0.219182320938253
AT3G61180_at 8.7418781246819 8.7706557693612 9.04423643056952 8.88409588146093 9.6390040794063 8.94219446762073 9.11497807229676 8.59420150843914 8.15445619923939 8.37175137719975 8.19458912179908 8.57910088926972 8.6086543426987 8.43643640136802 8.18885421010815 8.37218671181697 8.49370883347768 8.45916945579732 8.52374946404542 0.178652298237755 0.180984453728765 0.184855808073702 0.175205797856936 0.175439285387178 0.187751742109875 0.176601965229273 0.180804333832179 0.186574575244205 0.185420158692262 0.178143609068043 0.175205797856936 0.187249276260923 0.176683578121654 0.189729860441532 0.177024727525002 0.200048198637822 0.199221454065572 0.183337427195464 3 3|0 +|/ 22657416 22658204 22657779.7 22656541 22658642 + gene protein_coding_gene FALSE TRUE AT3G61180.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G63170.1); similar to ring zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29468.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.194278080850034 1.54810525401629 0.158400887828215 1 1.86865930229666 17.3496921297063 0.194278080850034 0.153153378728145
AT2G37520_at 5.7860671729164 5.72937962308429 4.87491623994671 5.41049307380577 6.31800128312803 5.03982052655572 4.85823727036718 4.94929104992579 4.14094640513652 4.09439192500222 4.20532623658664 4.91994690565463 4.95477269491053 4.87932649553495 4.24622086015362 4.63272741649853 4.84851095605414 4.68485826107627 4.35462949525378 0.253611701366265 0.248671597620500 0.251697262975327 0.250555191597002 0.246431571749767 0.274557568715130 0.253182571732532 0.246547980191299 0.260004720395248 0.24854597071451 0.246005250469629 0.246662969311201 0.258990908671439 0.257023885233715 0.254098158652245 0.247046623485849 0.248086201550074 0.244932594243743 0.243778273133947 2 2|0 -|/ 15752446 15753173 15752771.8 15751847 15756866 - gene protein_coding_gene FALSE TRUE AT2G37520.1 PHD finger family protein similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G53680.1); similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14274.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.277434644148401 1.54766658216478 0.158505352667374 1 1.86811442159681 9.80483436501932 0.277434644148401 0.240545538264585
AT2G34690_at 10.3566510391384 10.1687890914821 10.3334198742862 10.2221679204821 10.7619863590481 10.4657887205684 10.1708517990272 10.1211660438570 9.94959072810668 9.89603805769144 9.89392552459065 9.8632610107473 10.0666099551571 9.9003956874846 9.7684205307038 9.88387472942742 9.97566146356397 9.97966893674797 9.87733449221806 0.097909718035869 0.097114461664481 0.098758121141433 0.0961242756351188 0.097896587144303 0.102015035292177 0.0995045249558085 0.0981639034322644 0.0969455097680339 0.0924892769651067 0.0979705544649353 0.0969217271468666 0.095780666317181 0.0960361133795015 0.0999462922702382 0.0972091780027868 0.0967389164420921 0.0962881254770414 0.0965940924113513 2 2 + 14637595 14638827 14638345.091 14637386 14639140 + gene protein_coding_gene FALSE TRUE AT2G34690.1 ACD11 (ACCELERATED CELL DEATH 11) Gene product transports the glycolipid precursor sphingosine between membranes in vitro. Mutant constitutively expresses defense-related genes that accompany the hypersensitive response normally triggered by avirulent pathogens. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39670.1); similar to Os03g0784900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051478.1); similar to Os03g0710700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051050.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98504.1); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 0.125149514508745 1.54698905391319 0.158666819905368 1 1.86727301212714 20.2371684338903 0.125149514508745 0.0642568591298119
AT1G17860_at 6.3853915930918 6.94019854749137 5.20481000870948 5.39709639856499 5.39335469976022 5.46373264123353 4.12671165869153 4.32905094052445 4.56093554873844 4.00305618913149 4.67000184538109 5.7577598421965 4.42032016047082 4.87997663781123 5.11560730235109 4.13445683961241 4.01454670076784 4.90999653309009 4.47333402801628 0.252206082171172 0.268168946890361 0.251599005186693 0.268962558684082 0.249439775325643 0.264457217897840 0.264376839489857 0.255679975889759 0.268952845966671 0.250230963528889 0.256860769599850 0.250764075522980 0.24928726768096 0.261801583064327 0.25354030368096 0.2578851776429 0.273306825292673 0.259825162074306 0.24928726768096 1 1 + 6149375 6149801 6149540.455 6149294 6150031 + gene protein_coding_gene FALSE TRUE AT1G17860.1 trypsin and protease inhibitor family protein / Kunitz family protein similar to trypsin and protease inhibitor family protein / Kunitz family protein [Arabidopsis thaliana] (TAIR:AT1G73260.1); similar to Lemir [Lycopersicon esculentum] (GB:AAC63057.1); contains InterPro domain Proteinase inhibitor I3, Kunitz legume; (InterPro:IPR002160); contains InterPro domain Kunitz inhibitor ST1-like; (InterPro:IPR011065) 0.155734114765999 1.54577501706419 0.158956515753560 1 1.86576580380964 9.94684755501119 0.155734114765999 0.108166647782405
AT3G63210_at 7.50876795588187 7.56193329600985 7.00726136635453 7.19390705719568 8.39181361536136 8.32174268588415 6.91081353953124 7.43215269668365 5.37815868457186 6.34361778276024 5.02590990435361 5.2160365072924 7.13001436005971 6.4943519864081 4.06737510919067 6.40330495344709 7.23931833986726 5.81284260280391 6.29299789626603 0.214152923447166 0.214304559780978 0.222676765493939 0.209004820547099 0.224436289163880 0.220828085833858 0.213545436273798 0.213159805355766 0.216598184143992 0.208479980908109 0.210900368553987 0.206984966248436 0.206651079805135 0.207576342381212 0.213750402404006 0.208791076518901 0.215161771440323 0.206651079805135 0.213158677088251 3 3 - 23365204 23365660 23365409.091 23364590 23366135 - gene protein_coding_gene FALSE TRUE AT3G63210.1 MARD1 (MEDIATOR OF ABA-REGULATED DORMANCY 1) encodes a novel zinc-finger protein with a proline-rich N-terminus, identical to senescence-associated protein SAG102 similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT3G22550.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE87128.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.146991870867038 1.54413443122161 0.159348748766286 1 1.86373002375037 13.5053335307597 0.146991870867038 0.0970291464646487
AT1G68590_at 10.7805734564331 10.7007436374034 10.1826144542014 10.1741999082031 10.5621873914225 10.2664292587587 11.2167299301182 11.1549964403220 11.3481134568446 11.0680592727040 11.6220131656862 11.9137730771271 11.3314002129426 11.3952035176173 12.1465832071583 11.4638806055435 11.0006899072508 11.4997108726411 10.9390213489273 0.0665310861301511 0.0640538421582494 0.0685509338629652 0.067899597607575 0.0671099642198623 0.065504666009825 0.0673381206771032 0.0640538421582494 0.0677842482264837 0.0655576868703417 0.0688938665491871 0.065565973655593 0.0659165346114619 0.0703836479295404 0.0668186739497051 0.0646746230602464 0.0686464141732145 0.0660044744552534 0.0665434314091913 1 1 - 25761257 25761807 25761501.364 25761069 25761895 - gene protein_coding_gene FALSE TRUE AT1G68590.1|AT1G68590.2 plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative Identical to Plastid-specific 30S ribosomal protein 3-1, chloroplast precursor (PSRP-3 1) [Arabidopsis Thaliana] (GB:Q9SX22;GB:Q8LD87); similar to plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative [Arabidopsis thaliana] (TAIR:AT5G15760.1); similar to Plastid-specific 30S ribosomal protein 3, chloroplast precursor (PSRP-3) (GB:P82412); contains InterPro domain Plastid and cyanobacterial ribosomal protein PSRP-3/Ycf65; (InterPro:IPR006924) -0.119322159167756 -1.54403911398638 0.159371563949556 1 1.86361178067414 21.9623367330600 -0.119322159167756 0.0540993074601342
AT1G54320_at 10.2669642170443 10.3294938559413 10.3054867522188 10.3835655431626 10.2823963072380 10.0054914046202 9.70760950825383 9.82764570376645 9.70845049803216 9.63147105159841 9.95528978064677 9.889157431575 9.74492842547447 9.53274983794388 9.65096544394845 9.79712314557029 9.4337668423337 9.7286152284575 9.72492961746098 0.0863163286709336 0.0840024562178078 0.0890664097505914 0.0847339445968663 0.084655931090312 0.0874975622083624 0.084422743747406 0.0859415945000248 0.0963030263464867 0.086864001495611 0.0862506712562487 0.0853853559122176 0.0840024562178078 0.0899588809782381 0.0886734024097173 0.0844026092415526 0.0960764267047525 0.0906695409056754 0.088824447995059 1 1|0 -|/ 20279420 20280235 20279767.3 20279201 20281624 - gene protein_coding_gene FALSE TRUE AT1G54320.1 LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein similar to LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein [Arabidopsis thaliana] (TAIR:AT3G12740.1); similar to Os06g0665000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058302.1); similar to Os02g0173800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046043.1); similar to hypothetical protein [Lotus japonicus] (GB:BAD32828.1); contains InterPro domain Protein of unknown function DUF284, transmembrane eukaryotic; (InterPro:IPR005045) 0.119798737594162 1.54401682354824 0.159376899822759 1 1.86358412945814 19.8410107812095 0.119798737594162 0.0550224756780608
AT1G03475_at 8.75544130484489 8.69751271141078 8.4352441640331 8.45035187552802 8.58586019923249 8.22546760667171 8.46142202277949 8.16617065420323 8.3822660108521 8.05290999961595 8.29273846878339 8.78080245651913 8.4630401534883 8.44233268227661 8.8313080757565 8.41568158743748 8.40109733747898 8.65593445644791 8.06924934354633 0.123731636769631 0.122819879279804 0.135829739365281 0.126624342955959 0.121314648545618 0.128126923919216 0.119273056844951 0.127242239857072 0.128566795188013 0.124761885847744 0.123501934958280 0.119273056844951 0.119273056844951 0.122132376821769 0.1215052441089 0.123165885568096 0.136824326410504 0.121286495241491 0.119496822470096 1 1|0 -|/ 869466 870650 870020.625 869051 871212 - gene protein_coding_gene FALSE TRUE AT1G03475.1 LIN2 (LESION INITIATION 2); coproporphyrinogen oxidase Encodes a protein (AtCPO-I) with coproporphyrinogen III oxidase activity. Identical to Coproporphyrinogen III oxidase, chloroplast precursor (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) (LESION INITIATION 2 protein) (CPX) [Arabidopsis Thaliana] (GB:Q9LR75;GB:Q546I5;GB:Q94JR5); similar to HEMF2, coproporphyrinogen oxidase [Arabidopsis thaliana] (TAIR:AT4G03205.2); similar to Coproporphyrinogen III oxidase, chloroplast precursor (Coproporphyrinogenase) (Coprogen oxidase) (GB:P35055); contains InterPro domain Coproporphyrinogen III oxidase; (InterPro:IPR001260) 0.135659702829408 1.54347392516507 0.159506907984689 1 1.86291073028642 16.8239381608105 0.135659702829408 0.0812878405068895
AT2G26550_at 5.65481533888742 5.5209341150572 4.96272666385368 4.84446803704206 5.921556785005 4.98620080713167 6.24465614570458 6.17061565603507 6.25848924889385 5.84054266699323 6.63568107087256 6.75199913589727 5.62098861436434 6.81808116076076 6.69338823047759 6.69273889353844 5.26976241268091 6.17301268194853 5.96654738455254 0.190792176016871 0.190299528817800 0.199280877960411 0.198861305839787 0.187774825028759 0.201453603771842 0.195443381459224 0.185154181087338 0.197765790334342 0.199973314309686 0.197159949473642 0.197509410444573 0.189718190212982 0.194057101898224 0.198954752548004 0.191802391160793 0.207489959493372 0.193074270373226 0.190733705575417 2 2|0 -|/ 11298668 11300115 11299511.111 11298662 11300504 - gene protein_coding_gene FALSE TRUE AT2G26550.1 HO2 (HEME OXYGENASE 2); heme oxygenase (decyclizing) encodes a heme oxygenase that catalyzes the oxidation of heme to biliverdin IXalpha, CO and Fe(2+), a committed step in the biosynthesis of the phytochrome chromophore phytochromobilin. similar to HY1 (HEME OXYGENASE 1) [Arabidopsis thaliana] (TAIR:AT2G26670.1); similar to heme oxygenase 2 [Lycopersicon esculentum] (GB:AAK63013.1); contains InterPro domain Haem oxygenase; (InterPro:IPR002051) -0.204460241204310 -1.54164113362361 0.159946509607236 1 1.86063829238672 11.7151548395300 -0.204460241204310 0.165290495307539
AT1G02890_at 8.75106274545576 8.67088372357 8.98326371652022 8.95488733963048 9.12080400458364 8.94926463243397 8.73387611910792 8.85424029363427 8.61378434799156 8.74037877996483 8.79939493622374 8.609198461635 8.89173618015367 8.57979189685356 8.37394139803215 9.10685293427147 8.77819512794015 8.6450816422058 8.88987862679265 0.103810228604786 0.100452368892007 0.10112589645712 0.102979478009575 0.101496146261950 0.102167814552794 0.099216700829137 0.0982341981845798 0.105895193423042 0.103857402653640 0.110277271521304 0.101702951489503 0.0990146617412975 0.108006237487667 0.107094966929355 0.102039551474537 0.0998044915560948 0.106679158581589 0.102646703439930 1 1 - 645414 646209 645758.727 645092 651906 - gene protein_coding_gene FALSE TRUE AT1G02890.1 AAA-type ATPase family protein similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT1G62130.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G24860.1); similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT4G02480.1); similar to AAA-type ATPase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95244.2); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85040.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Immunoglobulin/major histocompatibility complex; AAA ATPase, central re (GB:ABE85038.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain SMAD/FHA; (InterPro:IPR008984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.112274678382427 1.54108600673924 0.160079872726777 1 1.85995028207365 17.6128043170741 0.112274678382427 0.0391375987357318
AT4G21580_at 8.54272916105257 8.91701266673302 9.15860018997608 9.31984740392252 9.13404011632673 8.6266693572358 8.96221220591164 8.6723947557949 7.64070479731305 8.1876319129827 7.61301856240817 7.5710322875053 8.07720439363081 7.98916402374292 7.35277392007729 8.28041721182036 8.15735333790505 7.9748028529212 7.65643968970011 0.169180444322591 0.168952014150384 0.165417853282550 0.160842077172598 0.165230536763541 0.162674806388365 0.161504999099176 0.169346762362244 0.169151608961413 0.169000642817733 0.167274408392128 0.167768842039303 0.164177573091466 0.161586072650196 0.166990155500390 0.161584654698733 0.166466492502937 0.164714302703141 0.165092810035535 4 4|0 +|/ 11476571 11477391 11476988 11475731 11477780 + gene protein_coding_gene FALSE TRUE AT4G21580.1|AT4G21580.2|AT4G21580.3 oxidoreductase, zinc-binding dehydrogenase family protein|zinc ion binding similar to NADP-dependent oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT5G61510.1); similar to putative quinone oxidoreductase [Thlaspi caerulescens] (GB:AAY18430.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.167457046622508 1.54049402043660 0.160222200622471 1 1.85921673237708 16.7693030439942 0.167457046622508 0.123283448748137
AT1G55960_at 9.75180764219204 9.73189212820012 11.2964272268856 11.2288461771988 11.2806201799480 11.1394843395570 12.0516658095705 12.0515237685435 11.8978276861608 12.0819231467544 11.8149711273853 11.4018052283885 12.1200080447178 12.0609295335476 11.0513035806051 12.4933820886659 12.3909546427064 11.9966942154140 12.1387889892426 0.0670085235108116 0.0612682047996490 0.0623940119260863 0.0604448196091416 0.0609480851221668 0.0642534166129759 0.0641558667934543 0.0603401062937352 0.0676111752213622 0.0621777743559857 0.0601370132091108 0.0612391557428457 0.0599975538655078 0.0608018048259345 0.0651906622234877 0.060566691342337 0.0698251176966855 0.0630957485984392 0.0619522940267459 1 0|1 /|- 20931639 20932139 20931835.4 20931308 20933682 - gene protein_coding_gene FALSE TRUE AT1G55960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13062.1); similar to Lipid-binding START [Medicago truncatula] (GB:ABE91086.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) 0.108182463698534 1.54026068138805 0.160278332127271 1 1.85892763493691 23.0444180748777 0.108182463698534 0.0272983360164178
AT3G22300_at 5.46753097603857 5.45102676440305 5.13785987715037 5.16964524408535 4.66731478618446 4.78697350944164 5.79305182593724 5.32818044265128 5.01247722421897 4.67551219534498 4.54578951631024 4.9439902652024 4.79875322236051 4.64836198220084 5.78002852511326 5.04919610618119 5.1489572718528 4.93280872198204 4.36643395310071 0.210465204608521 0.212207371365313 0.211678981202551 0.211724895389230 0.209204250176037 0.217655731213341 0.209372999814987 0.209376724701423 0.213853596209584 0.207373718905058 0.208046984553805 0.210381509920212 0.2204192544292 0.211166388438204 0.218721028270249 0.207373718905058 0.210182159750556 0.213706047502238 0.214886115765884 3 3 + 7885891 7886581 7886252.182 7885675 7886827 + gene protein_coding_gene FALSE TRUE AT3G22300.1 RPS10 (RIBOSOMAL PROTEIN S10); structural constituent of ribosome Nuclear-encoded gene for mitochondrial ribosomal small subunit protein S10 Identical to 40S ribosomal protein S10, mitochondrial precursor (RPS10) [Arabidopsis Thaliana] (GB:P42797;GB:Q9LUW7); similar to DEAD box RNA helicase, putative (RH9) [Arabidopsis thaliana] (TAIR:AT3G22310.1); similar to ribosomal protein S10 [Oxalis regnellii] (GB:AAG32317.1); similar to ribosomal protein S10 - garden pea mitochondrion (GB:S55879); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848) -0.136660618764946 -1.53921787068562 0.160529403492135 1 1.85763591667411 10.0580946743808 -0.136660618764946 0.0833013884098985
AT1G76100_at 11.6931426099769 11.7416312724042 11.4257838593248 11.4434724779754 11.8062382007080 11.6621952101839 12.0855785491188 12.1296781750794 12.3317759405304 12.2839117596804 12.5332224424103 12.6296456282083 12.3147311858724 12.3167272078360 12.6188232828554 12.3458863752494 12.0201938089124 12.4301916022079 12.2526722515790 0.0783532682619883 0.0751675120338151 0.0756282904901116 0.07868279982983 0.078182169118791 0.0758051610815527 0.074113607300437 0.0744399822024184 0.0762984479180576 0.076795579263823 0.076360639333156 0.074113607300437 0.0764246258979283 0.0800460048916165 0.078646032774402 0.074113607300437 0.0756378609558694 0.0748159602403864 0.075674193089076 1 1 - 28559115 28559520 28559280.909 28558881 28559662 - gene protein_coding_gene FALSE TRUE AT1G76100.1 plastocyanin Identical to Plastocyanin minor isoform, chloroplast precursor (PETE) [Arabidopsis Thaliana] (GB:P11490;GB:P93656;GB:Q52K91;GB:Q9SGS3); similar to DRT112 (DNA-damage-repair/toleration protein 112), copper ion binding / electron carrier [Arabidopsis thaliana] (TAIR:AT1G20340.1); similar to plastocyanin (GB:AAA32834.1); contains InterPro domain Plastocyanin; (InterPro:IPR002387); contains InterPro domain Blue (type 1) copper protein; (InterPro:IPR001235); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Blue (type 1) copper domain; (InterPro:IPR000923); contains InterPro domain Blue (type 1) copper subtype; (InterPro:IPR011572) -0.108180420083012 -1.53917726402948 0.160539187234543 1 1.85758562694953 24.093780548825 -0.108180420083012 0.027557126934779
AT4G17070_at 6.4725950313635 6.37465267906535 6.17771787247337 6.33081875373955 6.11461532324188 5.1647947572526 3.90495441188069 4.21115512841663 5.70124796124909 4.60485501902542 4.88265653684148 5.04398800837787 4.05545401451196 4.67464928684028 4.72917479697224 5.05591857972943 4.15434387448595 4.80722078800125 4.55807445920043 0.24158997918234 0.229960712641082 0.233796886282163 0.225675146613687 0.222473375134725 0.247504256988692 0.227270578257817 0.222074234663729 0.231826558449968 0.225302209112515 0.222074234663729 0.224089596397060 0.222074234663729 0.245540871074861 0.225452192991468 0.223518777377580 0.241810736536981 0.225203384242443 0.225749841538334 4 4|0 -|/ 9595612 9597344 9596171.7 9595404 9598191 - gene protein_coding_gene FALSE TRUE AT4G17070.1 similar to Os03g0100300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048644.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.213423643278524 1.53811691314274 0.160794856527569 1 1.85627267160595 10.4089887691184 0.213423643278524 0.175541806822457
AT3G56050_at 10.9645771094754 11.1737144218742 11.2820357542598 11.3584656158482 11.2614012211012 10.9744340240584 11.2879588603964 11.2991594515025 11.0255033935965 10.7774788215501 11.2580198586619 10.9889914483475 11.3626603316238 11.1764480939479 10.8771716274341 11.0272203737298 10.9961781434552 11.1120410870271 10.8680081336051 0.0784765002064112 0.0749924439252384 0.0772535541679032 0.0776369646183751 0.0764385787823344 0.0764373591665746 0.0763205197779265 0.0765428608600618 0.085490513746979 0.0756257328616408 0.078024379157795 0.0765000274083951 0.075457446880718 0.078710378035865 0.0844875904087056 0.0767375652443334 0.0806916250301712 0.0813569590753276 0.0826630219545673 3 3 - 20809303 20809861 20809615.455 20808934 20812144 - gene protein_coding_gene FALSE TRUE AT3G56050.1|AT3G56050.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G40270.1); similar to ser-thr protein kinase [Gossypium hirsutum] (GB:AAO59488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.12362147364131 1.53787638518265 0.160852902742138 1 1.85597490956278 22.195304050704 0.12362147364131 0.062887113497096
AT1G49050_at 9.695432189376 9.76234264613526 10.1677213319614 10.0774242430506 9.63546443278576 9.3222144459248 8.53708767481756 8.53138267443871 9.1270393612408 8.04970421289696 8.04256531135028 7.94638657114276 7.78168305135818 8.22922731363341 7.66734707412603 8.01461795463734 7.90133633394486 8.4046678978116 8.10209161599683 0.173143698674362 0.170659093153354 0.175334583129037 0.170786124335583 0.174483270061707 0.181269342835839 0.171201878403934 0.170269078267620 0.172013580313586 0.170090474154331 0.170212421214432 0.172198414172193 0.175953542986698 0.185170518494185 0.174273479642696 0.166953097453789 0.185494936147301 0.172776298831085 0.175208553371262 1 1|0 +|/ 18155747 18156824 18156388.75 18154206 18157029 + gene protein_coding_gene FALSE TRUE AT1G49050.1|AT1G49050.2 aspartyl protease family protein similar to nucellin protein, putative [Arabidopsis thaliana] (TAIR:AT1G77480.1); similar to Os06g0268700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057353.1); similar to Os02g0730700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048015.1); similar to Eukaryotic aspartyl protease family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96612.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.120672679513881 1.53771692063343 0.160891396394593 1 1.85577751363107 17.6785123724173 0.120672679513881 0.0576011284623654
AT3G10420_at 10.1890731099642 10.3279871320765 10.6953400791430 10.7853466282065 10.6922317680555 10.3873640958577 11.2025998707797 11.0528979975982 11.0283383327693 11.1090906457828 10.9985656382062 10.7175678701752 10.7467889993344 10.8519651896319 10.2770087054356 11.2014654830976 10.6983112645219 10.8652119885281 10.8371930399363 0.0994454708433445 0.0990286372214888 0.106382527296193 0.0969915703160026 0.0969915703160026 0.104832350197911 0.0969915703160026 0.100816683250088 0.107497074244428 0.100082304886583 0.0977699955533564 0.0975086758626038 0.0969915703160026 0.0990331697586924 0.101559210174878 0.0973701879066403 0.112209235170425 0.104155520574972 0.099967347964076 3 3|0 +|/ 3241388 3242252 3241907.3 3239185 3242542 + gene protein_coding_gene FALSE TRUE AT3G10420.1|AT3G10420.2 sporulation protein-related similar to ATP binding / ATP-dependent peptidase/ nucleoside-triphosphatase/ nucleotide binding / serine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT1G73170.1); similar to ATPase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79945.1); similar to Os07g0187400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059076.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593) -0.12499945762603 -1.53697918819388 0.161069587267398 1 1.85486443910168 21.5596807428081 -0.12499945762603 0.065384722372781
AT4G16442_at 5.77332632638874 6.59387690807621 5.16279002414495 5.60070614360215 6.85350333740491 5.85881961833021 7.12774932362447 7.63513361187642 7.05848449177125 6.92738021607578 8.05977441503923 7.9691414818166 7.0371674797211 7.65051913764397 7.49107766157325 6.87767416580193 6.12353348817218 6.76862703768947 6.73097611629312 0.252256115976957 0.257486161042621 0.259304540531998 0.252011291365243 0.255848561092167 0.269077679951275 0.259340545357583 0.261423887402411 0.280717493810292 0.258161601279111 0.258464150593213 0.257988909623183 0.255244595749873 0.261773184170797 0.253717606724694 0.252667623573603 0.260831168504393 0.270514255535751 0.252011291365243 4 4|0 -|/ 9272086 9272940 9272498.6 9271878 9273111 - gene protein_coding_gene FALSE TRUE AT4G16442.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT2G35760.1); similar to plant integral membrane protein TIGR01569 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99118.2); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.285995505617704 -1.53533324264356 0.161467783253122 1 1.85282812220574 13.4021396449205 -0.285995505617704 0.251490067056952
AT2G27500_at 5.88703902041089 6.21930249247310 7.18114268719966 6.89082919953407 7.96138586257652 7.13125437422864 7.22001140610014 6.80555319557514 6.06258608203654 6.11835181207536 5.83566636966607 5.16729713844224 5.96175435437177 6.4080755937179 4.44605508869178 6.9029506812887 6.80452880197993 5.6744142666837 6.5040428404046 0.225689103044259 0.219550668737456 0.219550668737456 0.222522382877436 0.229210524628076 0.223554281433929 0.220968738271403 0.231423589141211 0.240889459851931 0.219662726163690 0.231014300607925 0.222424173272139 0.226293759216694 0.219851890265483 0.24740809562911 0.220522299190648 0.237102103988128 0.229391713562905 0.219550668737456 2 2 - 11759467 11760200 11759937.545 11759248 11761106 - gene protein_coding_gene FALSE TRUE AT2G27500.1|AT2G27500.2|AT2G27500.3 glycosyl hydrolase family 17 protein|hydrolase, hydrolyzing O-glycosyl compounds Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to H0717B12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67163.1); similar to Os01g0860800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044874.1); similar to OSJNBa0073L04.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40655.2); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490)|Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to H0717B12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67163.1); similar to Os01g0860800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044874.1); similar to Os04g0412300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052739.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490)|Identical to Putative glucan endo-1,3-beta-glucosidase 14 precursor (EC 3.2.1.39) ((1->3)-beta-glucan endohydrolase 14) ((1->3)-beta-glucanase 14) (Beta-1,3-endoglucanase 14) (Beta-1,3-glucanase 14) (At2g27500/F10A12.18) [Arabidopsis Thaliana] (GB:Q9ZQG9;GB:Q2V449;GB:Q3EBS8;GB:Q8VWJ3); similar to glycosyl hydrolase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G32860.1); similar to H0717B12.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67163.1); similar to OSJNBa0073L04.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40655.2); similar to Os04g0412300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052739.1); contains InterPro domain Glycoside hydrolase, family 17; (InterPro:IPR000490) 0.214971188797334 1.53421463714477 0.161738904624813 1 1.85144487225949 12.9762746289427 0.214971188797334 0.177798388941873
AT3G13520_at 8.9822390700136 9.26768172419848 9.12512797674473 9.45433823344872 9.19154148577745 8.95720273476735 10.0948926178145 10.1851698747667 11.1450644637636 9.99264054174688 12.2777619005182 11.2784356723054 11.4831622376609 11.6291567457799 11.5436780416886 10.8493871247846 10.2148371592780 11.5228290971970 10.7280620594504 0.110496611907326 0.105945813893686 0.122910791262539 0.101615925974005 0.108940149277829 0.117450001884351 0.108101608371610 0.107827913951468 0.108005809715493 0.106009857265844 0.107613865160029 0.102235898710803 0.103625935782532 0.105564618432715 0.105206128877454 0.101372120408818 0.115034426099570 0.104361491373584 0.1063449773119 3 3 + 4409108 4409252 4409183.545 4408932 4409447 + gene protein_coding_gene FALSE TRUE AT3G13520.1 AGP12 (ARABINOGALACTAN PROTEIN 12) Encodes a GPI-anchored arabinogalactan (AG) peptide with a short 'classical' backbone of 10 amino acids, seven of which are conserved among the 4 other Arabidopsis AG peptides. These peptides may be involved in cell signaling. Identical to Arabinogalactan peptide 12 precursor (AG-peptide 12) (AGP12) [Arabidopsis Thaliana] (GB:Q9LJD9); similar to AGP21 (ARABINOGALACTAN PROTEIN 21) [Arabidopsis thaliana] (TAIR:AT1G55330.1); similar to unknown [Brassica rapa] (GB:ABB97032.1) 0.138770214200429 1.53381873634079 0.161834958352682 1 1.85095543508697 20.3931883908857 0.138770214200429 0.087031448696546
AT2G45180_at 13.2598095081132 13.5655184543008 13.4311492503117 13.4385500179868 13.745164943708 13.3866399218326 13.2243307478831 13.6251397898698 14.3240687133974 13.9249179113254 14.5056179376004 14.3706196330127 14.4600530678450 14.4253436744280 14.0349553022235 14.1963043299943 13.6468724229622 14.4310610925523 13.8506389577001 0.0668256049832356 0.0624700085494173 0.066338825027571 0.069212148780145 0.0624785509487025 0.0643286048462089 0.0665867025417715 0.062491794741482 0.0618792518921536 0.0628533527110003 0.0637445223278066 0.0644507106964218 0.0625552688445318 0.0638361494694277 0.0637978085783566 0.0618792518921536 0.0697043907431293 0.0633231130772676 0.0634503558865075 2 2 + 18633460 18633785 18633618.455 18633394 18634071 + gene protein_coding_gene FALSE TRUE AT2G45180.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT1G62510.1); similar to 14 kDa polypeptide [Catharanthus roseus] (GB:CAA81526.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.153660656760522 1.53381594745633 0.161835635174652 1 1.85095198753135 27.6055688092766 0.153660656760522 0.107056489685698
AT1G60430_at 5.47326569220515 5.99605007853065 5.94819499471952 5.7777995969827 7.18317879091577 6.3424840790064 6.22741204319419 6.59232955359715 5.86415289898416 5.5028604043531 5.71838335914908 5.91100479274668 6.30873382680188 6.03606297306687 4.897952879448 5.55997351447185 5.63837112684928 6.00889821429649 5.30535962316638 0.233736824128853 0.226040254776406 0.240419991695943 0.240918561516739 0.249459741469178 0.240989856612306 0.226040254776406 0.231150480677813 0.231244094315448 0.226040254776406 0.228519695781951 0.232307152111764 0.230159334057064 0.236852599451558 0.227955722980821 0.230501986723595 0.253398825889188 0.231440251713357 0.230747549729465 1 1 - 22268463 22269085 22268798.273 22268050 22269703 - gene protein_coding_gene FALSE TRUE AT1G60430.1|AT1G60430.2 ARPC3 (actin-related protein C3); structural molecule|ARPC3 (actin-related protein C3) similar to ARP2/3 complex, 21 kDa p21-Arc subunit [Medicago truncatula] (GB:ABE78338.1); contains InterPro domain ARP2/3 complex, 21 kDa p21-Arc subunit; (InterPro:IPR007204) 0.221557483605100 1.53366309078991 0.161872735150594 1 1.85076303465730 11.8512794676548 0.221557483605100 0.184955728677690
AT1G73840_at 5.7894773242273 5.74630832525983 5.58701689154297 5.73660039745334 5.80815427992801 5.58588429669691 5.57781458510721 5.62890015700132 5.26709690074203 5.32908272644914 4.84486130803332 5.14117510147752 5.51923420907837 5.12519660937444 5.23918323561647 5.57278555643336 5.59164836175654 4.67430367026233 5.71832231184872 0.178670367412512 0.175395950377364 0.182607319619891 0.177562015947697 0.173605616966252 0.186040896870237 0.176333819769125 0.18444364361697 0.176265461407923 0.176787441531511 0.188007423965253 0.178386549023751 0.175555308473827 0.175434975866438 0.173605616966252 0.176677259741205 0.188981326801969 0.175380389693248 0.180454176195502 1 1|0 -|/ 27767641 27768888 27768253.1 27767346 27770025 - gene protein_coding_gene FALSE TRUE AT1G73840.1 ESP1 (ENHANCED SILENCING PHENOTYPE 1) Resembles the CstF64 family of RNA processing factors that are conserved between yeast and mammals. In mammals, CstF64 is a component of the CstF complex which is required for mRNA 3'end formation along with other factors. similar to cleavage stimulation factor, putative [Arabidopsis thaliana] (TAIR:AT1G71800.1); similar to proline-rich protein precursor [Glycine max] (GB:AAC34889.1); contains domain RNA-BINDING PROTEIN (PTHR23139); contains domain PROLINE-RICH PROTEIN (PTHR23139:SF11) -0.115414969001432 -1.53331559713796 0.161957103935597 1 1.85033351943143 11.0083774419108 -0.115414969001432 0.0477870545405026
AT2G42600_at 12.1679491437513 12.3856227014001 12.2759660063156 12.3859732350000 12.4003001501525 12.2594840348258 12.5374662303754 12.6199023075646 12.7093921023948 12.7648316245749 12.6746589560866 12.5651384439280 12.4915827347126 12.4558405360523 12.3152865098487 12.6276442468493 12.6499748460733 12.7014454696905 12.6154313557839 0.0703705842654921 0.0695140832385031 0.0706962514588365 0.0692043265295956 0.0690063191208387 0.0709422643875799 0.0694290378036474 0.0684299107261823 0.0742029757506918 0.0702067814928522 0.0698623827621928 0.0684299107261823 0.0693884309257193 0.068500339096774 0.0713468771520338 0.0684299107261823 0.0709564205027789 0.0698095150587917 0.069160454829502 2 2 - 17741632 17742291 17741929.727 17741402 17746162 - gene protein_coding_gene FALSE TRUE AT2G42600.1|AT2G42600.2 ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2); phosphoenolpyruvate carboxylase Encodes one of four Arabidopsis phosphoenolpyruvate carboxylase proteins. Identical to Phosphoenolpyruvate carboxylase 2 (EC 4.1.1.31) (PEPCase 2) (PEPC 2) (AtPPC2) (PPC2) [Arabidopsis Thaliana] (GB:Q5GM68;GB:Q8GVE9;GB:Q9SIN0); similar to ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT3G14940.1); similar to ATPPC1 (PHOSPHOENOLPYRUVATE CARBOXYLASE 1), phosphoenolpyruvate carboxylase [Arabidopsis thaliana] (TAIR:AT1G53310.3); similar to Phosphoenolpyruvate carboxylase 2 (PEPCase 2) (PEPC 2) (AtPPC2) (GB:Q5GM68); similar to phosphoenolpyruvate carboxylase 1 [Gossypium hirsutum] (GB:AAB80714.1); similar to phosphoenolpyruvate carboxylase [Brassica napus] (GB:BAA03094.1); contains InterPro domain Phosphoenolpyruvate carboxylase; (InterPro:IPR001449) -0.116829732772695 -1.53320861417616 0.161983086489685 1 1.85020129482094 25.0074570572513 -0.116829732772695 0.0507815201796528
AT1G34010_at 4.16792723731847 4.81657912946683 4.5841397162766 4.48095842745655 5.40289464176926 4.87435479891879 5.78631105021108 5.86671643774579 5.72150173890366 5.47767194337121 5.78852592330678 5.80561724580473 5.64258155957087 5.69121800500064 5.40604989151687 5.3615860363286 5.00142111293898 5.78598454007403 5.62973070369184 0.213161088448092 0.208052557780732 0.222711043759613 0.22023848175106 0.209383590331750 0.218201164214057 0.204635958188257 0.208883989240785 0.211738858438021 0.207888193325472 0.206338245210803 0.208320691471727 0.210759975946495 0.206547889371387 0.215817051286995 0.21203268758959 0.231349376028513 0.213817172813730 0.210501722237867 1 1 - 12360355 12360766 12360579.3 12359516 12361169 - gene protein_coding_gene FALSE TRUE AT1G34010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22790.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81200.1) -0.186529161792394 -1.53288103419637 0.162062667798137 1 1.84979645567593 10.5824890972154 -0.186529161792394 0.146557485209293
AT3G26810_at 5.17315766232402 5.71231254216241 5.12704984059328 5.37826939344221 6.05935558773699 5.7948316577451 5.64007769996354 5.25313098870267 5.93848081707769 5.37924472922912 6.46132246601317 6.19980537649852 5.98360713680071 5.87200767477318 5.71868782365067 6.01832210503132 5.6848882673208 5.71525360028209 5.94935168849047 0.236058848406956 0.204212266596885 0.214370980572371 0.214550779052933 0.205374629053528 0.208846171824407 0.206517024842353 0.205503799850139 0.233996137767815 0.214420736346649 0.215810375999181 0.204212266596885 0.2091545522319 0.226158446259527 0.211168740323520 0.206630599462566 0.222751910081717 0.214198501665409 0.207804652196880 3 3 + 9871108 9871676 9871273.273 9869082 9871877 + gene protein_coding_gene FALSE TRUE AT3G26810.1 AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase similar to GRH1 (GRR1-LIKE PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G03190.1); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB3 (AUXIN SIGNALING F-BOX 3), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G12820.1); similar to auxin-responsive factor TIR1-like protein [Populus tomentosa] (GB:ABG56238.1); similar to Os04g0395600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052659.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93930.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.173125645644225 1.53276777631339 0.162090190462605 1 1.84965649675835 11.3734877805315 0.173125645644225 0.131053911292986
AT1G01430_at 8.99594950268007 9.15284762957858 9.00850727060874 9.20440446685518 9.91503382444266 9.81238892155716 9.96719857953376 10.1956363009733 9.81739948947484 9.89533022693674 10.0188597722898 9.5841789461251 9.95002547940585 9.67322967850904 9.56279760805784 9.50451963725541 9.45533659946674 9.84125740588773 9.8390447396336 0.0974545110018855 0.101258772942612 0.101876488398743 0.0987677288650878 0.0980098779633977 0.100832716489014 0.0999376343027263 0.101296317306559 0.104475308134207 0.0974545110018855 0.0974545110018855 0.09989798879587 0.099860056809501 0.102296175826723 0.101167571966980 0.102988144487704 0.104197926438659 0.0974545110018855 0.097884488874838 1 1 - 157008 157526 157290.182 156801 158655 - gene protein_coding_gene FALSE TRUE AT1G01430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01080.1); similar to unknown protein Cr17 [Brassica napus] (GB:AAX51387.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.122320113399595 -1.53245247208590 0.162166834180455 1 1.84926688700136 19.3061793751402 -0.122320113399595 0.0613581905325109
AT2G02970_at 7.44501299648374 7.35593709139206 6.96597297751471 7.18325358528335 7.81665028531278 7.68057837766869 7.53948676415694 7.36990039899634 7.33216647861818 6.69759071377284 7.21656625149411 6.74008836502561 6.81444594830709 6.8809547983099 6.48940047908128 6.64401741628089 6.61503135351992 6.55013244366125 6.86802909668644 0.204090657254829 0.198775979560478 0.205107673385969 0.21651242857584 0.200236354552454 0.223355966702408 0.206042920148633 0.201521195808165 0.230252347999836 0.202259352167051 0.203614076869626 0.208459548639208 0.208184938060046 0.217087862660700 0.201810856764082 0.211060547568384 0.214882690529504 0.212268482233699 0.205752082059021 2 2 - 865486 866146 865696.364 865069 868288 - gene protein_coding_gene FALSE TRUE AT2G02970.1 nucleoside phosphatase family protein / GDA1/CD39 family protein similar to nucleoside phosphatase family protein / GDA1/CD39 family protein [Arabidopsis thaliana] (TAIR:AT1G14230.1); similar to Nucleoside phosphatase GDA1/CD39 [Medicago truncatula] (GB:ABE85847.1); contains InterPro domain Nucleoside phosphatase GDA1/CD39; (InterPro:IPR000407) -0.119034818689099 -1.53176121152207 0.162334978220763 1 1.84841287030138 14.274478257094 -0.119034818689099 0.0553830295345423
AT2G27230_at 6.21107299118778 6.43003877252572 6.41227968280397 6.39967265077148 6.56422465045619 6.46523856936809 6.26365026511947 6.17924313970135 6.05442474772726 6.6161044136811 6.26230788455861 6.5021676425486 6.23229201421876 6.41610389597573 6.30535281160555 6.74294392672629 6.41259706631762 6.56255413774362 6.50437998808953 0.175295869391092 0.171921508123718 0.169017146969249 0.166933024622576 0.169251285924597 0.169042265358100 0.174737171941117 0.172538628811689 0.171187224696771 0.166933024622576 0.173858493763605 0.167788793914970 0.173634959449817 0.177412229562443 0.171916924646660 0.166933024622576 0.166933024622576 0.171609142287501 0.174343942333625 2 2|0 +|/ 11660178 11660892 11660530.9 11657436 11661221 + gene protein_coding_gene FALSE TRUE AT2G27230.1|AT2G27230.2 transcription factor-related similar to transcription factor [Arabidopsis thaliana] (TAIR:AT1G64625.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABD32181.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.113628067756118 1.53136580796257 0.162431227266458 1 1.84792446131929 12.7762657430557 0.113628067756118 0.0441298750207008
AT1G62850_at 5.95952897405713 6.23415728153503 6.32807041845752 6.31518892652323 6.46427155484141 5.9615905117207 6.52536736219415 6.8473597430129 6.20107268094213 6.2433349319134 6.91409651340317 6.58202123209494 6.23575564497885 6.93540078762953 6.71575938151501 6.85500294167996 6.07088981889911 6.3145192314883 5.96449478406247 0.154537966048816 0.152119632970902 0.153512911615643 0.159433508959417 0.154134437808447 0.157586684184856 0.158260165396883 0.155387844404711 0.156848452192604 0.155847323391098 0.158104258663358 0.156030605114902 0.153214200038600 0.158318237814096 0.154223917560977 0.154270737979755 0.162899890605937 0.15597315314936 0.156687669813647 1 1|0 -|/ 23276274 23277047 23276622.875 23275368 23277967 - gene protein_coding_gene FALSE TRUE AT1G62850.2|AT1G62850.3 translation release factor similar to Os03g0249200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049558.1); similar to Predicted peptidyl-tRNA hydrolase (ISS) [Ostreococcus tauri] (GB:CAL57051.1); contains InterPro domain Class I peptide chain release factor; (InterPro:IPR000352) 0.15865345383718 1.53098193826326 0.162524717529669 1 1.84745036301771 12.6865575930096 0.15865345383718 0.113737071060001
AT2G45700_at 5.57129021272368 6.15787086064332 5.45376467367225 5.81321781620952 6.32709101559117 6.07311807877641 5.5062330794755 5.90597322039816 5.27545132781153 5.32695325420581 4.940521321753 4.90834438862412 4.84667210571687 4.87445483842087 4.36417988864298 5.63903130922152 5.50135454379894 4.73547822062577 5.82725705610389 0.218394669962111 0.219627990780152 0.227181319952109 0.218260712274435 0.218410275819396 0.231411124860455 0.219997960423033 0.219099779771243 0.247440641474630 0.225663334741857 0.225374786900830 0.222753427563214 0.230099513995334 0.227399029472610 0.22132630788039 0.221447729832091 0.227097838964108 0.229568931774442 0.224345869467277 2 0|2 /|- 18834309 18835044 18834690.111 18834074 18837602 - gene protein_coding_gene FALSE TRUE AT2G45700.1 sterile alpha motif (SAM) domain-containing protein similar to SNM1 (SENSITIVE TO NITROGEN MUSTARD 1) [Arabidopsis thaliana] (TAIR:AT3G26680.3); similar to putative SNM1 [Oryza sativa (japonica cultivar-group)] (GB:BAD36078.1); similar to Os09g0439000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063271.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain DNA repair metallo-beta-lactamase; (InterPro:IPR011084); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.184421624760528 -1.53010089704636 0.162739474212644 1 1.84636247109151 11.0774740979234 -0.184421624760528 0.144537204044645
AT4G31990_at 10.1640411844487 10.1099165991558 10.2846151867610 10.3027364665010 9.84612625260934 9.7961296807013 10.4905581117737 10.2365968085398 9.44222051970851 9.84446854406148 9.710596370109 9.89069115460597 9.79612913301467 9.84571748914553 10.2375621672868 9.84904006820839 10.1631343853231 9.86466107784815 9.20798918008799 0.113729307515754 0.105325816736809 0.110349791639220 0.110478873250262 0.10414108495916 0.105531797139119 0.107216062500051 0.110487699052435 0.114709821458738 0.115928079996370 0.113509906784384 0.108868939759777 0.111679946832981 0.110096119638132 0.106949119861607 0.108226642423250 0.107388856028847 0.120117007793301 0.116206546914940 4 4|0 -|/ 15471089 15471977 15471469.4 15470767 15473862 - gene protein_coding_gene FALSE TRUE AT4G31990.1|AT4G31990.2|AT4G31990.3 ASP5 (ASPARTATE AMINOTRANSFERASE 5) encodes a plastid-localized aspartate aminotransferase Identical to Aspartate aminotransferase, chloroplast precursor (EC 2.6.1.1) (Transaminase A) (ASP5) [Arabidopsis Thaliana] (GB:P46248;GB:O49392;GB:Q8LGE6); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G19550.1); similar to Asp aminotransferase (GB:1908424A); similar to aspartate aminotransferase-like [Solanum tuberosum] (GB:ABB55364.1); similar to aspartate aminotransferase [Medicago sativa] (GB:AAB46611.1); contains InterPro domain Aspartate/other aminotransferase; (InterPro:IPR000796); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.114294560035169 1.53002630524575 0.162757667845278 1 1.84627038187808 19.8627988173007 0.114294560035169 0.0458689057298629
AT4G32300_at 7.02820527429564 7.51239012261943 6.97643569096874 7.09396617788235 7.4829033342561 7.30637548105718 7.26506295825981 7.49679107590982 7.69238546789011 7.57956569842317 8.32863346121393 7.81989833125873 7.57215753462544 7.88104925355028 7.45086518440713 7.54204733935825 6.69238886336657 6.88513121248978 7.84657179816307 0.177631844383742 0.177631648708580 0.185982301678022 0.179281642155298 0.176747349191608 0.177758294890744 0.177082951642296 0.175881671046613 0.193303094395970 0.174895138119505 0.176208048081058 0.173099130028072 0.187556487581262 0.184866659920780 0.183345053973069 0.175952571251987 0.19236145747635 0.190697550389459 0.176787194409283 4 4 + 15601896 15602396 15602213.636 15599481 15602601 + gene protein_coding_gene FALSE TRUE AT4G32300.1 lectin protein kinase family protein similar to carbohydrate binding / kinase [Arabidopsis thaliana] (TAIR:AT5G35370.1); similar to Protein kinase; Curculin-like (mannose-binding) lectin; Apple-like [Medicago truncatula] (GB:ABE91586.1); similar to protein kinase (GB:AAA33915.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD46526.1); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.147672555344216 -1.52890090199470 0.163032384760094 1 1.84488127546843 14.8841141239191 -0.147672555344216 0.0998794382735555
AT1G61520_at 14.3105998249975 14.4352019207645 14.4958113402026 14.5471318650554 14.3577227934476 14.5091543263259 14.4494540543126 14.5488138559352 14.6879130609058 15.0019339629337 15.1234462426677 15.1016760011450 15.1910506600883 14.8872841381105 15.0268933870746 14.9483496318211 14.9872606184288 15.0973670227356 14.9031478577541 0.0541180538610099 0.0533144732431814 0.052512612642487 0.0534289394497472 0.0544461879129427 0.0545190167305459 0.0542765641271563 0.0561727147827475 0.0639682890738077 0.0547983450853853 0.0594982827460123 0.0534423488929432 0.0549923576631748 0.0576972826192388 0.0574085158146371 0.0540406871135849 0.0550149764959666 0.0559427540856191 0.0537316575232971 1 1 + 22704222 22704778 22704542 22703675 22705048 + gene protein_coding_gene FALSE TRUE AT1G61520.1|AT1G61520.2 LHCA3 (Photosystem I light harvesting complex gene 3); chlorophyll binding|LHCA3 (Photosystem I light harvesting complex gene 3) PSI type III chlorophyll a/b-binding protein (Lhca3*1) similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to LHCA5 (Photosystem I light harvesting complex gene 5) [Arabidopsis thaliana] (TAIR:AT1G45474.2); similar to PSI type III chlorophyll a/b-binding protein (GB:AAA18206.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCA5 (Photosystem I light harvesting complex gene 5) [Arabidopsis thaliana] (TAIR:AT1G45474.2); similar to PSI type III chlorophyll a/b-binding protein (GB:AAA18206.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) 0.111261001408243 1.52754955808623 0.163362802197352 1 1.84321400306936 29.4116100426086 0.111261001408243 0.0390672035666192
AT1G18660_at 9.02369919712825 8.9496271620327 9.4206223751416 9.3129710516508 9.49577690524736 9.26047097493944 9.7568964411652 9.63926115687826 8.54108414975054 9.12564247178639 9.13490112109111 8.8120155177961 9.29052580888476 9.19926780463508 8.73468551728072 9.36559477232128 9.37606376734118 9.201227171569 9.14290034453438 0.116369809542471 0.113431143098160 0.115967295216222 0.115841783079364 0.115354080638375 0.118517926850046 0.116819551687810 0.121268695442244 0.132389634383836 0.117292985471176 0.115283734236571 0.115427675291515 0.114564671543636 0.117215068115733 0.122913417545049 0.114153506307354 0.117800775848091 0.126959898899550 0.119405065563412 1 1|0 +|/ 6423444 6425506 6424566.889 6421109 6425872 + gene protein_coding_gene FALSE TRUE AT1G18660.1|AT1G18660.2|AT1G18660.3|AT1G18660.4 zinc finger (C3HC4-type RING finger) family protein similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to unnamed protein product [Macaca fascicularis] (GB:BAE00874.1); similar to PREDICTED: LON peptidase N-terminal domain and ring finger 1 [Pan troglodytes] (GB:XP_519609.2); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to PREDICTED: similar to CG32369-PB, isoform B [Mus musculus] (GB:XP_910612.2); similar to PREDICTED: similar to CG32369-PB, isoform B [Mus musculus] (GB:XP_146279.6); similar to PREDICTED: LON peptidase N-terminal domain and ring finger 1 [Pan troglodytes] (GB:XP_519609.2); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.116416100267418 1.52745364829134 0.163386275838203 1 1.84309570043926 18.3953294115923 0.116416100267418 0.0508328492967495
AT3G17900_at 6.54694607241013 6.53978988349187 6.12833763287907 6.34769324019297 6.48215616431019 6.37213107967799 6.0634597472832 6.29350713126279 5.50217407894072 5.49074602174259 6.14641863139578 6.06089625528851 5.67265759878269 5.99941341816299 5.89479199343693 6.01569346124472 5.60184468703796 6.00491557866776 5.9746426219538 0.213932829614703 0.207980856625224 0.218870167156091 0.204641324045528 0.211029354280604 0.228096897366497 0.209676619741038 0.214160606103636 0.240140131191868 0.212606891609869 0.219250529587213 0.213353838237472 0.215180583974454 0.223869407990558 0.213674707726562 0.208963611031615 0.229126856598318 0.219705680636978 0.205261315827253 3 3|0 +|/ 6131849 6133045 6132499.7 6128512 6133389 + gene protein_coding_gene FALSE TRUE AT3G17900.1 similar to Os03g0152800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048995.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94028.1) 0.120189266388095 1.52730633099287 0.163422337180863 1 1.84291399546726 12.1369692158791 0.120189266388095 0.0582234210122207
AT3G59090_at 7.42832859083148 7.67290651534298 7.39202841419402 7.41860567345075 7.79386016568806 7.35547303876139 6.92968265987933 7.15512597070265 7.31743916498059 6.8281147947006 7.27969770307392 7.27570222108927 7.25651205157136 7.36720884737151 6.67277670142133 7.28889002534565 7.27197905787552 7.47864708346478 7.27945704438015 0.158714645344856 0.147832136076104 0.148866038219869 0.148393997961663 0.150718569709784 0.144597985131600 0.148301741747008 0.152879756787364 0.144870843270928 0.149598275468023 0.149370881113213 0.144473545881519 0.148004359961683 0.154519518765201 0.151256682615416 0.148276954874773 0.151689272299072 0.158375051117334 0.147896469595156 3 3|0 +|/ 21851865 21852868 21852534.5 21850175 21853732 + gene protein_coding_gene FALSE TRUE AT3G59090.1|AT3G59090.2|AT3G59090.3 similar to TOM1 (TOBAMOVIRUS MULTIPLICATION 1) [Arabidopsis thaliana] (TAIR:AT4G21790.1); similar to Os01g0751300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044258.1); contains domain Family A G protein-coupled receptor-like (SSF81321)|similar to TOM1 (TOBAMOVIRUS MULTIPLICATION 1) [Arabidopsis thaliana] (TAIR:AT4G21790.1); similar to Os01g0751300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044258.1) 0.144118632774496 1.52702741399328 0.163490631870848 1 1.84256999752535 14.5822999016507 0.144118632774496 0.0953423890315368
AT2G34710_at 5.36482263787479 5.52995824032599 5.7362209448415 6.08917398441495 6.48845108091058 6.26520661365284 6.88413639268038 6.91782381953304 6.41023002717801 7.15425448630738 6.2690549076691 6.84308839529781 6.89657348789802 6.56025503073805 6.26311688622349 6.94973489393646 6.59333908153903 6.4355841749519 6.94212053864079 0.177727691796266 0.179266775672235 0.180721841620092 0.183381543097949 0.185356121253027 0.180910386407127 0.187015266722766 0.186425912039703 0.182441810825168 0.183272418907421 0.182464573598294 0.182884216674829 0.186309504558719 0.184236137621884 0.181425240255092 0.182285995418035 0.188911134941025 0.177727691796266 0.177727691796266 2 2|0 -|/ 14646646 14647352 14647046.5 14646402 14651352 - gene protein_coding_gene FALSE TRUE AT2G34710.1 PHB (PHABULOSA); DNA binding / transcription factor Dominant PHB mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. Has overlapping functions with PHAVOLUTA, REVOLUTA and CORONA. similar to PHV (PHAVOLUTA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G30490.1); similar to REV (REVOLUTA), DNA binding / lipid binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60690.1); similar to ATHB-8 (HOMEOBOX GENE 8), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G32880.1); similar to class III HD-Zip protein 3 [Populus trichocarpa] (GB:AAX19052.1); similar to class III HD-Zip protein 4 [Populus trichocarpa] (GB:AAX19053.1); similar to PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris] (GB:AAS66760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Chitin binding Peritrophin-A; (InterPro:IPR002557) -0.131806888371120 -1.52493532940855 0.164003705630182 1 1.83999082304876 12.8779134016078 -0.131806888371120 0.0779358264262862
AT1G17690_at 5.45410676421450 5.99486192654549 5.58198234814259 5.41193707077197 5.7412193448312 5.97429180404286 5.8095344280756 5.6841966508917 5.13867780203115 5.29117783509249 4.70472789176944 5.3861742903968 4.74992055373302 4.49673796677255 5.18080002141082 5.17452196233317 5.31934617432164 4.92665762034439 5.29364013914501 0.230421689124694 0.233177483881715 0.233966159755775 0.233719876010204 0.245929092296656 0.227557572867742 0.239440066992011 0.226524429134784 0.233976565362919 0.230137158432145 0.233914491337847 0.233848172901246 0.229056024135527 0.236504811886724 0.229383986697291 0.230956905336965 0.226630697350515 0.230677313192245 0.233794825846819 1 1|0 -|/ 6082910 6084258 6083526.4 6082748 6088333 - gene protein_coding_gene FALSE TRUE AT1G17690.1 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to Os05g0295100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055109.1); similar to MGC79554 protein [Xenopus tropicalis] (GB:NP_001008035.1); contains InterPro domain Protein of unknown function DUF1253; (InterPro:IPR010678) -0.153560874552829 -1.52347121549452 0.164363626881312 1 1.83818694676926 10.8232793266352 -0.153560874552829 0.108261408693512
AT3G01780_at 6.2719495145772 6.18081325777294 6.04928776695102 6.04085993470699 5.58101610931844 6.07293847646364 5.6214568286129 6.13942422576608 7.12790959671394 6.76567788747809 6.83275292633009 7.30705758544293 6.61022146734815 6.82256812003688 6.66057679628326 6.61776616552892 6.56946371879562 6.55963181141807 6.99668175652716 0.20935757474225 0.197232969883146 0.203538557477058 0.204834550203791 0.207159674815453 0.200294285060433 0.198941989233799 0.200301111815684 0.205781590073633 0.204701708135846 0.194578496769179 0.198718184115109 0.198878810179783 0.204821324772588 0.203415669832169 0.200090292476476 0.218087373852265 0.198347300370372 0.203127931749204 3 3|0 +|/ 282728 283336 283025.5 279067 283554 + gene protein_coding_gene FALSE TRUE AT3G01780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G08710.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95799.1); similar to Os02g0793100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048366.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE79738.1); contains domain ARM repeat (SSF48371) -0.166651820582002 -1.52287650763946 0.164510024317793 1 1.83745449483606 12.85018221634 -0.166651820582002 0.124629961483151
AT4G09340_at 5.26779099062026 6.01587776142123 5.67257840244395 5.85686798878413 6.60273982428951 6.41550761028647 5.83866440129157 5.80154781382503 5.83178155459702 5.18738282449162 5.3038974562684 5.35952618089127 5.45213890039932 5.40938538154665 5.12376190317065 6.0118642119229 6.03694145772171 5.23845155799222 5.61081433310474 0.204389440370175 0.205342078525282 0.206795503247203 0.20239340070902 0.207943740509052 0.204099902547829 0.207225756748004 0.206548714443573 0.208886588935941 0.204403364960149 0.204376801030472 0.21122729045489 0.206755963535587 0.211938061268770 0.220935577088461 0.219854239188782 0.209909165302813 0.210548689956936 0.206696162153025 4 0|4 /|- 5925044 5925265 5925136.1 5924599 5927632 - gene protein_coding_gene FALSE TRUE AT4G09340.1 SPla/RYanodine receptor (SPRY) domain-containing protein similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G35470.2); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877) 0.177311429251418 1.52245631665274 0.164613531584427 1 1.83693707273101 11.4516079084387 0.177311429251418 0.137361152718321
AT3G54380_at 6.52918751230208 6.85956544537348 6.8286072328835 7.04693233755531 7.75745879557315 6.43848685509251 6.29251608957844 6.65420849324158 5.81210923034419 6.12196825794164 6.30237092428134 6.16548181793032 6.25995566006435 6.5145759786353 5.9305208715724 6.3617513471066 5.71346699980733 6.28892188123653 6.27268584189549 0.144545348463012 0.144557096482010 0.146261724275167 0.146161734158904 0.150600238540034 0.147686229999574 0.142988564333294 0.144216691403790 0.160917953797084 0.142277209665828 0.144562159590502 0.142570724444721 0.140737880421355 0.144114261157748 0.144116448111678 0.141140411614629 0.152145390520193 0.149956736304278 0.142727951676258 3 3 - 20145003 20147705 20146181.864 20144871 20147781 - gene protein_coding_gene FALSE TRUE AT3G54380.1|AT3G54380.2 SAC3/GANP family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06290.1); similar to Os03g0352200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050121.1); similar to SAC3/GANP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95944.1); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) 0.27860574758553 1.52236002392054 0.164637259925115 1 1.83681850884068 12.9313962427699 0.27860574758553 0.246402362727125
AT3G18790_at 7.09004746760484 6.67166869782693 5.99307255115418 5.91353840653075 7.0948518143689 6.28386919439584 6.93644887357949 6.565882314217 6.41665559735387 6.67078041994672 6.62885336097631 6.90021626045024 6.72829865844367 6.70837078221091 6.75205557551695 6.68694056184736 6.37756645334024 6.87799386152648 6.79347591770901 0.208453462139385 0.209567232360583 0.21490232892485 0.210605837680418 0.231339242334590 0.223411114453465 0.218809353460836 0.211210425687747 0.228654467656119 0.214313442321653 0.213286609801164 0.210868810959449 0.208450770516337 0.214080367859610 0.210089318992264 0.207923973681546 0.218505975486271 0.21192084354774 0.210428379412186 3 3 + 6478204 6478722 6478411.636 6477705 6479554 + gene protein_coding_gene FALSE TRUE AT3G18790.1 similar to 2 coiled coil domains of eukaryotic ori (GB:BAD19345.1); contains InterPro domain Isy1-like splicing; (InterPro:IPR009360) -0.207056276204413 -1.52216135276581 0.164686225876335 1 1.83657390048584 13.2359262071059 -0.207056276204413 0.170998575238847
AT3G45310_at 8.04233856317635 8.32968692445355 8.35103818788998 8.3947262822719 7.9458350906426 7.92545829328984 7.4960605364651 7.79073398919246 7.3473923106027 7.10460250998734 6.81145905481465 7.15864225290289 7.2277919332782 7.29985997900658 7.02936812617348 7.46892954652837 6.7324837331269 7.45845947047587 6.94666521938562 0.210432661372867 0.218347743659685 0.219370669975961 0.216713020885762 0.210548909515627 0.217877354922368 0.213242035486886 0.211756790966956 0.217131142321870 0.220371058603383 0.212692467225399 0.20927555222657 0.220400001415531 0.21586034887421 0.211377439826757 0.217989415793683 0.23587745401712 0.215481238239152 0.220541964823999 3 3|0 -|/ 16639690 16640476 16640128.6 16639369 16641506 - gene protein_coding_gene FALSE TRUE AT3G45310.1|AT3G45310.2 cysteine proteinase, putative|cysteine-type peptidase Identical to Thiol protease aleurain-like precursor (EC 3.4.22.16) [Arabidopsis Thaliana] (GB:Q8RWQ9;GB:Q9M3E7); similar to AALP (ARABIDOPSIS ALEURAIN-LIKE PROTEASE), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G60360.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60582.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668)|Identical to Thiol protease aleurain-like precursor (EC 3.4.22.16) [Arabidopsis Thaliana] (GB:Q8RWQ9;GB:Q9M3E7); similar to AALP (ARABIDOPSIS ALEURAIN-LIKE PROTEASE), cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT5G60360.2); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60582.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668) 0.127523521124097 1.52121771991775 0.164918977969050 1 1.83541231150743 15.1751152044378 0.127523521124097 0.0717134409113082
AT3G04550_at 9.75922516744232 9.64190099922392 9.30692996288216 9.3035193757733 9.73410469584155 9.56634456023212 9.04050340874716 9.28705833909227 8.81677937746033 9.1311422100292 8.85149775149136 9.34834996356648 9.27088415640883 9.19004573794616 9.31421892913148 9.0556609482548 9.25876943411804 8.82971365788 8.89918594195514 0.0946413570220448 0.0896187114231766 0.0922804499424352 0.0997662203538203 0.0942935556090053 0.0951974404606755 0.0928806829787734 0.0905349343156798 0.0943904178052533 0.0964491287581037 0.0948017956481221 0.0940195476250414 0.0931411862529592 0.089802512851425 0.090484639426351 0.0931071026297169 0.095561094510923 0.0915731230217723 0.0910461437796957 3 3 + 1226743 1227248 1227031 1225928 1227442 + gene protein_coding_gene FALSE TRUE AT3G04550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G28500.1); similar to Os10g0445600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064712.1); similar to hypothetical protein Npun02004305 [Nostoc punctiforme PCC 73102] (GB:ZP_00109308.1) 0.118204699628647 1.52056043126325 0.165081275026179 1 1.83460343268258 18.4994125214033 0.118204699628647 0.0554610875527284
AT1G14830_at 7.64076520789085 7.77098485247877 7.56163064952797 7.48230810332628 7.96626978847293 7.67672756075877 7.98685086955614 8.04347809531719 7.68526599034901 7.88909769026662 8.0388160551407 7.89124434998426 7.30448514680925 7.63832126318847 8.0431647590706 7.59666594312793 7.35835533940608 7.94943849382685 7.75742577581897 0.135676859728802 0.129913912216822 0.130623244592015 0.131264429182323 0.129339124223497 0.133881827602037 0.132668623396569 0.128115319171863 0.142892137931176 0.125462248251574 0.128336833337620 0.129006431424664 0.129323448421637 0.14639686443809 0.126426352170536 0.128913663745954 0.133615532558355 0.134888166268689 0.126156820214493 1 0|1 /|- 5107701 5108338 5108062.556 5107416 5111665 - gene protein_coding_gene FALSE TRUE AT1G14830.1 ADL1C (DYNAMIN-LIKE PROTEIN 5); GTP binding / GTPase Encodes a dynamin-like protein that is involved in mitochondrial morphogenesis and pollen development. Protein is localized as speckles in the cytoplasm, partially co-localizes with mitochondrial markers, cell plate of dividing cells, and the tip of root hairs, root cap cells, and expanding part of trichoblasts. Identical to Dynamin-related protein 1C (Dynamin-like protein C) (Dynamin-like protein 5) (Dynamin-like protein DLP1) (DRP1C) [Arabidopsis Thaliana] (GB:Q8LF21;GB:Q8S3C8;GB:Q9FNX6;GB:Q9LQU8;GB:Q9SE81); similar to ADL1D, GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT2G44590.3); similar to ADL1 (ARABIDOPSIS DYNAMIN-LIKE PROTEIN), GTP binding [Arabidopsis thaliana] (TAIR:AT5G42080.1); similar to ADL4/ADLP2/DRP1E/EDR3 (DYNAMIN-LIKE PROTEIN 4), GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT3G60190.1); similar to SDL5A (GB:AAC49183.1); similar to Dynamin central re (GB:ABE90709.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58207.1); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) -0.119243732057423 -1.52038521097831 0.165124564280316 1 1.83438783297968 15.5185391763982 -0.119243732057423 0.0574714946268954
AT3G21140_at 5.31842999282178 5.47205934547386 5.4012278521653 5.54807812741046 5.08141263442932 5.53361554218719 4.32364667962262 4.51756491168577 5.13323644993579 4.68017844762835 4.62815872557302 4.79698768437467 4.48470636102094 4.47872684863271 5.0558738529598 4.21783779422352 5.15065175370887 4.75762990000405 4.87553166172004 0.187912445783644 0.185576323760537 0.181670045509497 0.185882542312417 0.182101557788118 0.189477521876463 0.18472264504166 0.181784261335622 0.183051330424170 0.186079345314478 0.188267580469224 0.187037733040311 0.184937723456489 0.186063970789534 0.185500692637238 0.201109051686482 0.186818702278868 0.181240617248728 0.183280923818663 3 3 - 7409976 7410821 7410390.182 7409448 7412231 - gene protein_coding_gene FALSE TRUE AT3G21140.1 FMN binding similar to FMN binding [Arabidopsis thaliana] (TAIR:AT1G51560.1); similar to Os02g0148400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045891.1); similar to Os08g0517500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062243.1); similar to pyridoxamine 5'-phosphate oxidase-related, FMN-binding [Solibacter usitatus Ellin6076] (GB:YP_827186.1); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.141582200973933 1.52008786445282 0.16519804873924 1 1.83402199352005 9.94582295313633 0.141582200973933 0.0927512833503
AT2G04230_at 5.39124936866215 5.74144512271175 5.63112903304121 5.24493825865776 6.5984046329264 5.57290715544466 7.05605033625107 6.58291405348138 6.23529210967513 5.73652974823003 5.4797487306135 6.26613240699712 5.95357045803928 5.72408193378178 5.74659992973375 6.76791898576756 6.06560987291093 6.27564081096226 6.32765008641885 0.246274954751842 0.255626837726540 0.240143673116935 0.246842161448870 0.245607171080569 0.242617634600618 0.246947169322253 0.247968833786499 0.253091855831664 0.251566075864828 0.248217184707236 0.240143673116935 0.244797047509614 0.240143673116935 0.245424418072997 0.248131023313410 0.261519206555292 0.247566591531518 0.240143673116935 2 2|0 -|/ 1447038 1447708 1447389.875 1446861 1449097 - gene protein_coding_gene FALSE TRUE AT2G04230.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G49030.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE92019.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain FBD; (InterPro:IPR013596); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.247990520299821 -1.51921697827677 0.165413442167945 1 1.83295072145905 12.0447481814181 -0.247990520299821 0.21526243119972
AT2G22780_at 9.0040785039982 8.90778983109182 9.10928379191608 9.16281383474017 9.02256328931383 8.76998975389138 8.93448009629026 8.88181200592394 7.97772677954335 7.83558994735481 7.74619925834602 7.86370284566038 7.91605748749267 8.19581844331517 7.9622919201924 7.96372957064571 8.1272006518001 7.96122449353431 7.65192135886317 0.169861737781071 0.170837556386858 0.171183238041437 0.178590662269075 0.168896648039242 0.168479302047672 0.177608474993676 0.169048856281800 0.177763192050193 0.176485567946473 0.177041870666376 0.168532211519664 0.167658791485974 0.171913757421176 0.172266735042947 0.167286076660835 0.179244181046872 0.174170462020342 0.173625557725838 2 2|0 -|/ 9697259 9698168 9697804.125 9696495 9699223 - gene protein_coding_gene FALSE TRUE AT2G22780.1 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1); malate dehydrogenase Identical to Probable malate dehydrogenase, glyoxysomal precursor (EC 1.1.1.37) [Arabidopsis Thaliana] (GB:O82399); similar to PMDH2 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 2), malate dehydrogenase [Arabidopsis thaliana] (TAIR:AT5G09660.1); similar to Chain A, Mature And Translocatable Forms Of Glyoxysomal Malate Dehydrogenase Have Different Activities And Stabilities But Similar Crystal Structures (GB:1SEV); similar to Malate dehydrogenase, glyoxysomal precursor (GB:P19446); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) 0.114702306712772 1.51916689773784 0.165425836032773 1 1.83288912766863 16.8684884446259 0.114702306712772 0.0485492491672081
AT3G29130_at 5.37474321605912 6.06477536324639 5.21237670015147 5.19200170749279 6.1440611157562 5.8995616182261 5.58656369329975 5.52819703672684 5.64514206111703 5.28869858353634 6.19646654901443 6.57616187666256 6.34680238423477 6.06889793997074 5.55437735293781 5.76595197550644 4.70951243122359 5.51864271307779 5.50346871671562 0.289379086667946 0.295330479651599 0.289379086667946 0.289379086667946 0.307947694394591 0.289379086667946 0.330375607102308 0.29160297313119 0.289379086667946 0.301410936543250 0.289379086667946 0.289379086667946 0.289379086667946 0.289379086667946 0.297589632848596 0.289379086667946 0.307360079597155 0.302034354021883 0.300225388648705 3 3 - 11103804 11105046 11104121.333 11103527 11105089 - gene protein_coding_gene FALSE TRUE AT3G29130.1 similar to hypothetical protein MtrDRAFT_AC152752g12v1 [Medicago truncatula] (GB:ABE87460.1); contains domain FAMILY NOT NAMED (PTHR13511); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXE2 (PTHR13511:SF1) 0.168214495222902 1.51820668132624 0.165663629244184 1 1.83170837288902 11.2858874430123 0.168214495222902 0.127138796128968
AT1G01230_at 9.03875878616152 9.22027702087716 9.04282079318344 9.05921195830336 9.63492179387575 9.06924216811313 9.1627371791229 9.1816814754707 8.8039563197468 8.46873533451735 9.01145039509764 9.05721719765193 8.68523124047923 9.06286410536762 8.70449080988712 8.7740911569524 8.27583336894728 8.98580486720937 8.4451606814228 0.158484196240114 0.149794379523897 0.173218499187167 0.153866034553142 0.152789766434701 0.164302792005992 0.158187237333144 0.151358659662146 0.158196029259353 0.161313477890122 0.154213505213074 0.149794379523897 0.163428626580431 0.149794379523897 0.156341964590474 0.154244609994075 0.175468125073284 0.159278641094362 0.161719334864141 1 1|0 +|/ 97701 98995 98462.778 97476 99240 + gene protein_coding_gene FALSE TRUE AT1G01230.1 ORMDL family protein similar to ORMDL family protein [Arabidopsis thaliana] (TAIR:AT5G42000.1); similar to Os02g0673600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047715.1); similar to unknown [Narcissus pseudonarcissus] (GB:AAL69388.1); similar to OSIGBa0103M18.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66850.1); contains InterPro domain ORMDL; (InterPro:IPR007203) 0.148845505215468 1.51749315598732 0.165840527785091 1 1.83083122721743 17.8723265658525 0.148845505215468 0.102901316117503
AT3G03190_at 7.8358139709708 7.89924232528357 6.8789698419649 6.60833508119195 7.77817622085522 7.77044633858021 8.25074437257632 8.0904365341006 4.66219506874371 8.13267210116986 7.80398956987001 7.54331134250548 7.9806984349454 7.93912801204472 6.60187587216069 7.48772750464212 8.09467944393472 7.78825596627762 7.18233465701542 0.180729270539652 0.178033257433916 0.179843957129224 0.180425748219642 0.175658108251061 0.183448428325602 0.176356316664533 0.180664490652025 0.199008882708565 0.181217352164953 0.194063663696545 0.178538285224076 0.179265679294707 0.179089342692745 0.18403041809295 0.177587429578098 0.178061749056218 0.183110204139720 0.177311053061968 3 3 + 735483 735830 735633.273 735035 735994 + gene protein_coding_gene FALSE TRUE AT3G03190.1 ATGSTF11 (GLUTATHIONE S-TRANSFERASE F11); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Glutathione S-transferase (EC 2.5.1.18) (GST class-phi) [Arabidopsis Thaliana] (GB:Q96324); similar to ATGSTF12 (GLUTATHIONE S-TRANSFERASE 26), glutathione transferase [Arabidopsis thaliana] (TAIR:AT5G17220.1); similar to glutathione S-transferase [Citrus sinensis] (GB:ABA42223.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.117906781284923 1.51616407635153 0.166170484515513 1 1.82919796259547 14.7960333576607 0.117906781284923 0.0555461488478392
AFFX-r2-Ec-bioB-M_at 7.6248419577409 8.084007237792 8.67108948421615 8.3910380869804 7.71807015293877 8.08886836923033 7.86543275269327 8.11513591428013 1.44695637309878 1.55034965048144 1.46612150674757 1.32375344686863 1.51735091456301 1.26630842054660 1.75573135403682 1.59977558918180 1.80607808918745 1.35707527865668 1.44497293692957 0.244996124799358 0.238557806609354 0.237682980183173 0.240727163840385 0.250018349850528 0.247114595896044 0.249494434509143 0.241195331448957 0.240832362449268 0.249591863321345 0.240609915550904 0.248747702227512 0.239122632069235 0.244042705165699 0.234688468857538 0.238834825100962 0.240084695630495 0.234688468857538 0.244974957415717 NA NA NA NA NA FALSE FALSE 0.162838364592574 1.51492492564533 0.166478642204209 1 1.82767590102262 9.56595248372241 0.162838364592574 0.121027524035838
AT3G43540_at 8.31974746602136 8.30927069671889 8.21159220427924 8.19535555090961 8.85659517561484 7.90880100497352 8.85606344052287 8.79688788301818 8.60823052844904 9.04098032463381 9.0097730791702 9.00729768057345 8.80969385550906 8.69587918310871 8.86049771826622 9.25376800057878 8.11819970891397 8.65893556226003 9.12355665006528 0.160311840149614 0.155612387882649 0.161339586879335 0.161365248143001 0.160363877829262 0.171596711416105 0.165563944616199 0.156934012563028 0.170058984108795 0.159815789059322 0.155639484602523 0.155612387882649 0.155612387882649 0.172062671473133 0.157052498532372 0.155632917360595 0.174223146821896 0.173184453121376 0.160382386078858 3 0|3 /|+ 15443086 15443970 15443634.778 15441677 15444175 + gene protein_coding_gene FALSE TRUE AT3G43540.1|AT3G43540.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47860.1); similar to Os09g0436900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063263.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36432.1); contains InterPro domain Protein of unknown function DUF1350; (InterPro:IPR010765) -0.199953311730589 -1.51386605658781 0.166742369789090 1 1.82637581128208 17.2947948942224 -0.199953311730589 0.164373595315024
AT3G56140_at 9.3939328892324 9.49588649644393 9.69431992236962 9.67705022180137 9.58952957093021 9.30369656185318 9.81621447975929 9.80390680936385 9.46471329909296 9.47408184071408 9.3572310916887 9.19283851260812 9.65264004524002 9.48108279811659 8.88743799022712 9.78892431092403 9.22947241252051 9.17102453898558 9.60987179793836 0.117319656274576 0.112796158362005 0.117964079007809 0.120494816043683 0.116832066141422 0.119063588744322 0.117854148925410 0.119612221827931 0.124011122532811 0.116069605501029 0.112796158362005 0.113481863959419 0.113651298043074 0.120884806455802 0.123640334876054 0.112796158362005 0.130753139552344 0.120197231680376 0.117615189744015 3 3 + 20842820 20843537 20843190.909 20840261 20843850 + gene protein_coding_gene FALSE TRUE AT3G56140.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G40400.2); similar to Trimeric LpxA-like [Medicago truncatula] (GB:ABE84885.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU44243.1); similar to Os01g0826900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044677.1); contains InterPro domain Protein of unknown function DUF399; (InterPro:IPR007314) -0.116238474752120 -1.51353170592838 0.166825722195976 1 1.82596539386118 19.0274690065296 -0.116238474752120 0.0526452563130926
AT4G02260_at 9.18148783397876 9.06060593407187 9.27040648573718 8.96895622142936 9.35861658755273 8.79661307761477 9.90298751838131 9.53268100188846 9.09256534938857 9.41510569672135 9.31235614117963 9.14016955231493 9.25164139450559 9.21755332437978 9.18381244506275 9.44252652732678 9.26436759161325 9.24905506550983 9.3198868006111 0.149334642191772 0.148880082491316 0.153310406220943 0.145492468053837 0.142760843373247 0.155672892609602 0.142462795741886 0.151757409846531 0.159600800391059 0.141255391024938 0.157417540483175 0.145872150203194 0.146783839236867 0.152493193910851 0.149286101011995 0.143068515153657 0.155745132099286 0.152400706547034 0.139493215798035 4 4|0 +|/ 990346 991120 990568.6 985232 991494 + gene protein_coding_gene FALSE TRUE AT4G02260.1|AT4G02260.2|AT4G02260.3 RSH1 (RELA-SPOT HOMOLOG); catalytic similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT like protein RSH1 [Nicotiana tabacum] (GB:BAC76004.1); similar to Os03g0340900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050067.1); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain TGS-like; (InterPro:IPR012676); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674)|similar to RSH3 (RELA/SPOT HOMOLOG 3), catalytic [Arabidopsis thaliana] (TAIR:AT1G54130.1); similar to RelA-SpoT like protein RSH1 [Nicotiana tabacum] (GB:BAC76004.1); similar to Os03g0340900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050067.1); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain RelA/SpoT; (InterPro:IPR007685); contains InterPro domain TGS-like; (InterPro:IPR012676); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) -0.169479919666848 -1.51326639503230 0.166891889636356 1 1.82563975787494 18.5258132679869 -0.169479919666848 0.129324012744055
AT2G47580_at 7.88593024899424 7.65804852582639 7.53835289786095 7.98051658287036 8.03556893280001 7.55668435138794 8.41423148138989 7.78646679358007 7.48806466458404 7.33149336086327 6.85921772006889 7.19576000325535 7.22506330046145 7.42060691607255 7.78287692403107 7.73655494156454 7.23119985868611 7.20225942726168 7.88398353160727 0.17811932633449 0.180170454208864 0.188892281468701 0.184143272652364 0.181601073180098 0.184302225605149 0.184579548125515 0.181955027955679 0.192038240790645 0.184737889268542 0.182594984027823 0.186451623452613 0.181025440086533 0.181658927908459 0.182725595723324 0.181584063982575 0.189336189700378 0.190203558726012 0.179229787238367 2 2|0 +|/ 19524630 19525727 19525376.6 19524257 19525941 + gene protein_coding_gene FALSE TRUE AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding encodes spliceosomal protein U1A similar to U2B'' (U2 small nuclear ribonucleoprotein B), RNA binding [Arabidopsis thaliana] (TAIR:AT2G30260.1); similar to U1snRNP-specific protein, U1A [Solanum tuberosum] (GB:CAA90282.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.197271685238743 -1.51306688431622 0.166941662174052 1 1.82539490363261 15.3067447628938 -0.197271685238743 0.161494195919374
AT2G32720_at 5.44904541994571 5.81747258071383 5.43717569135687 5.46200673793021 5.71063149419823 4.87726544829074 5.73924510314417 6.16983999018113 6.21850014383312 5.92920247564672 6.957559497372 7.36825484134479 6.32957542238316 7.0799345906057 7.44243127431354 6.59691021656412 6.02564351857273 6.69360602513209 5.76850976500024 0.213990347055982 0.199961810643893 0.206858647551296 0.202603287004108 0.210198976940196 0.229431746411784 0.21651109594384 0.215006721359552 0.204315217103059 0.20456615013997 0.199961810643893 0.20735615769496 0.199961810643893 0.224424787184963 0.206660465826185 0.201608356975110 0.209004201887232 0.208612190040882 0.200887290970305 2 2|0 -|/ 13884095 13885491 13884482.7 13883851 13885608 - gene protein_coding_gene FALSE TRUE AT2G32720.1 B5 #4 (cytochrome b5 family protein #4); heme binding / transition metal ion binding member of Cytochromes b5 Identical to Probable cytochrome b5 isoform 2 [Arabidopsis Thaliana] (GB:O48845); similar to ATB5-B (Cytochrome b5 B) [Arabidopsis thaliana] (TAIR:AT5G48810.1); similar to cytochrome b5 isoform Cb5-B [Vernicia fordii] (GB:AAT84459.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.208768848953565 1.51168924270528 0.167285707354259 1 1.82370463500211 11.9747404172765 0.208768848953565 0.174456446660896
AT3G14400_at 6.67309458130089 6.60686079091293 6.85082092510105 6.99900129667632 7.37640124595775 6.75203251029953 7.3029055049072 6.04789328486621 6.32373052255965 6.16353243113459 6.52447561812617 6.77327877529411 6.51915284489212 6.74784604020216 6.40668518715973 6.66299348214167 6.24559617359045 5.81394009152867 6.26283338315976 0.19879961037384 0.194417034466837 0.20019835821206 0.200547420962636 0.196980247020945 0.201600082000002 0.194417034466837 0.202973410331551 0.206482213484468 0.205778472158884 0.200878825086031 0.195694483004485 0.199913071180350 0.201100471083107 0.200132621377176 0.198278307158458 0.213768203573977 0.222648230716800 0.199527891690950 3 3 - 4812296 4812800 4812569.545 4811539 4815504 - gene protein_coding_gene FALSE TRUE AT3G14400.1 UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G57990.1); similar to Os05g0510300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056008.1); similar to 'unknown protein, contains ubiquitin carboxyl-terminal hydrolase' [Oryza sativa (japonica cultivar-group)] (GB:AAT44134.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.274294684172037 1.51045419411744 0.167594678374899 1 1.82219002354715 13.1820153369535 0.274294684172037 0.244199466861523
AT2G26830_at 5.48548799590526 6.43371192329494 6.46869487686622 5.93354136878759 7.05887850131073 6.22939929137299 6.76047649050979 6.62413413089539 5.72760390140648 6.02811746359746 6.76096363935 6.37429772599882 6.33504121221765 6.24166462976425 6.14166652637604 6.71858410638803 6.18551520716718 5.92598559576216 5.93077613603371 0.273448617008691 0.259196681695197 0.26052476405887 0.254777621974901 0.263494448120203 0.253366502854171 0.262864283391271 0.267679306301273 0.276382061946666 0.262110532399972 0.263224612646718 0.255630217698965 0.255766385851366 0.274119704279058 0.258750751001203 0.256252007637723 0.265245743971490 0.260053225462336 0.263270853293765 2 0|2 /|+ 11453026 11453997 11453621.143 11450639 11454186 + gene protein_coding_gene FALSE TRUE AT2G26830.1 EMB1187 (EMBRYO DEFECTIVE 1187); kinase/ phosphotransferase, alcohol group as acceptor similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to putative ethanolamine kinase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD36072.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline/ethanolamine kinase; (InterPro:IPR002573) 0.268320768899254 1.51027421440803 0.167639746105427 1 1.82196935978448 12.4897725710631 0.268320768899254 0.238045662980529
AT2G14080_at 8.11712519055185 8.56045404764593 8.56884839057264 8.55798395691489 8.97852834918141 8.00753140015084 8.2055741457286 8.3396604456672 6.72354130899323 6.69224973384631 7.1100671593879 6.83902617733881 7.81849197529238 6.78186750805483 6.58398425853158 7.4856831651995 6.91133067813814 6.23547875869436 6.84835675245517 0.255367010630054 0.262099929800645 0.264043278103659 0.260855334133679 0.257358839336115 0.275526472118728 0.26350542458873 0.265222602982095 0.300637109422762 0.258563781295169 0.257970409617932 0.25415464605062 0.25415464605062 0.271878063279526 0.272805637470042 0.257184227606229 0.298927366121094 0.286181662439996 0.259029464978204 2 2 + 5935356 5935841 5935624.727 5932268 5936682 + gene protein_coding_gene FALSE TRUE AT2G14080.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G44510.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G11250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G25510.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44392.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.219272422560667 1.51002180438176 0.167702968878421 1 1.82165991688646 15.2796918117240 0.219272422560667 0.186182428364355
AT1G64550_at 7.77469346164147 7.91740219239039 7.78913919244456 7.63938659131033 7.92259164610473 7.54377933264694 8.0866701774617 8.08584494236164 7.03223767557129 7.14974670612894 7.12696380779048 7.4803939430231 6.99254569317986 7.10996370861991 7.58116527740138 7.30048059231338 6.37785808693622 7.28455814848901 7.33132412773214 0.197758974632617 0.198350731558182 0.201834903215199 0.197235212342661 0.20252873527377 0.197921235755533 0.197494605269953 0.198699877360558 0.205143286316381 0.211273459260650 0.199064660181081 0.197302230350336 0.200778321684035 0.20448928981274 0.207211813437163 0.20104103820599 0.208276337404163 0.201301640991586 0.203683469776566 1 1|0 +|/ 23975717 23977008 23976391 23972442 23977277 + gene protein_coding_gene FALSE TRUE AT1G64550.1 ATGCN3 (Arabidopsis thaliana general control non-repressible 3) member of GCN subfamily similar to ATGCN4 (Arabidopsis thaliana general control non-repressible 4) [Arabidopsis thaliana] (TAIR:AT3G54540.1); similar to putative non-transporter ABC protein AbcF1 [Oryza sativa (japonica cultivar-group)] (GB:BAD23047.1); similar to ABC transporter-like protein [Glycine max] (GB:AAL66714.1); similar to Os02g0826500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048587.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.128395091047723 -1.50946643039458 0.167842151685399 1 1.82097915264981 15.0088604388935 -0.128395091047723 0.0746929015134371
AT1G79610_at 5.9287531194471 6.08275118092439 6.56987709323423 6.32871573650526 6.21125169966124 5.68380897515225 5.90843006113232 5.63621560503031 5.30075900429959 5.42164317611935 4.57130110412009 5.22263511802125 5.4176075052773 5.33063060872193 4.82634225438543 5.35455513944026 5.87418590338809 5.55176921617867 5.07214548206731 0.246901239469679 0.237544553843577 0.246227683579921 0.257261553425899 0.232314468928555 0.252195371053655 0.233565957556566 0.239091754476658 0.246143807499748 0.233084745355246 0.232314468928555 0.233978928653377 0.241134259297847 0.232314468928555 0.247782409855598 0.236177431582069 0.252831204095868 0.232453492752614 0.232314468928555 1 1|0 -|/ 29958172 29959016 29958716.5 29957766 29962082 - gene protein_coding_gene FALSE TRUE AT1G79610.1 sodium proton exchanger, putative (NHX6) Identical to Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (NHX6) [Arabidopsis Thaliana] (GB:Q8RWU6;GB:Q8S395;GB:Q9MA14); similar to ATNHX5/NHX5 (NA+/H+ ANTIPORTER 5), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G54370.1); similar to Na+/H+ antiporter [Populus tomentosa] (GB:AAX37333.1); similar to Na+/H+ antiporter, isoform 2 [Solanum lycopersicum] (GB:CAC83608.1); similar to Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (GB:Q8RWU6); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.156577509933799 1.50873011708656 0.168026838289852 1 1.82007680586508 11.3104642223961 0.156577509933799 0.114028545376082
AT3G12650_at 6.29355425450223 7.07451331531227 6.20364249718985 6.17598304864533 6.97074663794182 6.71264776276823 6.18044249770886 6.5327557164391 6.29498663367104 6.29568020574008 5.97418032733003 6.00311859646426 6.37348494464789 6.02170182877429 6.14494271472185 6.00436678533275 5.63644865936344 6.23069748983115 6.68683314692161 0.237295657184767 0.228435968614728 0.224320200250863 0.242553713011724 0.22155615682344 0.229831199287658 0.229221035660946 0.22155615682344 0.240334496126893 0.223569382911611 0.225867543580878 0.233466888266655 0.225586521437484 0.232336312873908 0.232670764807343 0.226953115013922 0.247601488530316 0.237355977363916 0.227134432856668 3 3 - 4017892 4018443 4018128 4017837 4018638 - gene protein_coding_gene FALSE TRUE AT3G12650.1 similar to Os02g0718000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047937.1) -0.190888559911838 -1.50872898001914 0.16802712363578 1 1.82007541258094 12.7552612148564 -0.190888559911838 0.154920341862475
AT4G38570_at 5.62723625322273 5.65884055362502 5.54111686572145 5.31486993372269 6.45373905193403 5.97008331203867 5.55847193920685 5.5160754499616 5.62305271525083 6.06106848754637 6.00671390846502 6.13152230524332 6.01162430047783 5.89797327360905 5.9483608823453 6.30593844670855 5.44156462601799 5.66416673333717 5.939875748782 0.192027037316235 0.194446930709608 0.191433336964819 0.193081650072187 0.201963292329495 0.198710119341967 0.194528502656819 0.201168333688323 0.212536183336351 0.204920425402942 0.193718616704079 0.199852639617219 0.191148493578966 0.199544082843432 0.208060592496974 0.193836413689899 0.221095255488764 0.201195298622108 0.195972003401895 4 4|0 -|/ 18031446 18032870 18032064.222 18031273 18033557 - gene protein_coding_gene FALSE TRUE AT4G38570.1 CDP-diacylglycerol--inositol 3-phosphatidyltransferase, putative / phosphatidylinositol synthase, putative Identical to Probable CDP-diacylglycerol--inositol 3-phosphatidyltransferase 2 (EC 2.7.8.11) (Phosphatidylinositol synthase 2) (PtdIns synthase 2) (PI synthase 2) (AtPIS2) (PIS2) [Arabidopsis Thaliana] (GB:Q8GUK6;GB:Q9SZN6); similar to ATPIS1 (Arabidopsis thaliana phosphatidylinositol synthase 1), CDP-diacylglycerol-inositol 3-phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT1G68000.1); similar to phosphatidylinositol synthase [Brassica napus] (GB:AAM77369.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.140556825424644 1.50827566435002 0.168140917090697 1 1.81951999598619 11.6053785249551 0.140556825424644 0.0928558568116615
AT3G26630_at 3.85931408375515 5.17501239135499 4.89419299473405 5.00440834414691 6.01744377722643 5.48949308548638 6.49535383233747 6.69052896091227 5.40121232985733 5.11213199485275 5.2062555708133 4.59950993319318 4.86467890455442 5.08028777527127 4.86461053059139 5.0767367905673 4.35520425914427 4.63697548069846 5.04935641929105 0.253568003394304 0.253867794202449 0.255299920768997 0.256057538933016 0.259981271213443 0.264163372558286 0.254585535924425 0.267773587205405 0.252331455145436 0.253711196038535 0.261037941331207 0.252276324108751 0.252319722193396 0.249387958837536 0.255515085326117 0.249846921423350 0.257929725928248 0.255556269973025 0.249387958837536 3 3 - 9792841 9793384 9793124.273 9792608 9794222 - gene protein_coding_gene FALSE TRUE AT3G26630.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G66520.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABE93365.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.277851137877188 -1.5077717952454 0.168267481132073 1 1.81890274564798 10.4647680938798 -0.277851137877188 0.248382262314605
AT2G17220_at 8.74097074636747 8.79099202168267 9.35764245547101 9.37556568565003 8.58004759142157 8.20730520870482 8.54845356071932 8.39372658512647 8.403544965081 8.02309613850518 8.08438683579227 8.01705764268875 8.47877814279628 8.21582816061268 7.74425941079166 8.0219285611804 8.14604476992704 8.35775489680538 8.00423279789348 0.144780963420468 0.146210758086481 0.146539973730781 0.146474632587457 0.146908787692235 0.15348893291899 0.14879223819573 0.147495857815802 0.159154501979605 0.158589355577817 0.152121402493196 0.148642389532652 0.143516246557001 0.151696931187438 0.150986638445644 0.148255167583217 0.152936926823273 0.151409837753617 0.148255055066504 2 2 - 7494949 7495516 7495220.636 7494736 7497258 - gene protein_coding_gene FALSE TRUE AT2G17220.1|AT2G17220.2 protein kinase, putative similar to CONNEXIN 32, kinase [Arabidopsis thaliana] (TAIR:AT4G35600.1); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to CONNEXIN 32, kinase [Arabidopsis thaliana] (TAIR:AT4G35600.1); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.125617337792819 1.50772491218571 0.168279261730678 1 1.81884531857830 16.8877777000933 0.125617337792819 0.0704442367130672
AT3G55260_at 8.54691555574568 8.63273535387177 8.2654637974966 8.30149958921365 8.35855968444154 8.11590050950344 7.42737269706277 7.3691348828184 7.76491656449991 7.40279343504326 7.3499698846095 7.82161424113293 7.08241943289284 7.66810010690328 7.27056726970155 7.62828996444814 7.3283405053905 7.50165408117384 7.3243522947312 0.201511734196176 0.206398015656574 0.203158778730101 0.200712966716101 0.205339414014957 0.210579889145674 0.199629039898248 0.199629039898248 0.210157207903117 0.203358391789247 0.203934403836830 0.200303902882216 0.208186486366895 0.211050708369445 0.202469863005361 0.204490157592082 0.21116331208344 0.214553646640749 0.201639925245363 3 3|0 +|/ 20502894 20503747 20503412.8 20500225 20504053 + gene protein_coding_gene FALSE TRUE AT3G55260.1 glycosyl hydrolase family 20 protein similar to glycosyl hydrolase family 20 protein [Arabidopsis thaliana] (TAIR:AT1G65590.1); similar to Os05g0115900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054468.1); similar to Os01g0891000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045052.1); similar to putative beta-N-acetylhexosaminidase [Oryza sativa (japonica cultivar-group)] (GB:AAT77374.1); contains InterPro domain Glycoside hydrolase, family 20; (InterPro:IPR001540) 0.112665805239636 1.50690436347701 0.168485564895238 1 1.81784038474813 15.6040595257057 0.112665805239636 0.0460919439924104
AT2G27110_at 6.36419328843647 5.99232466867747 6.2657519291958 5.98196831582754 6.23584537991012 6.30616777267404 6.27821873785458 6.43035086254296 5.787657928246 5.84205951297464 5.65678184911989 5.70663399795597 5.49364219072999 5.59456879096972 5.58604171234839 5.88530708057851 5.70566776322706 5.47989709343843 5.89313020226877 0.215037070999215 0.219121105400057 0.212262795805576 0.223200937406894 0.219937718900374 0.223100773719471 0.223107113901082 0.213700263944507 0.216946654521802 0.215564161330906 0.21260587873393 0.217009472239257 0.215455411694718 0.221136083422715 0.218357523719955 0.213310735385041 0.222687340890541 0.225105157246277 0.212801296460566 2 2 - 11584294 11585480 11584933.273 11583747 11587872 - gene protein_coding_gene FALSE TRUE AT2G27110.1|AT2G27110.2|AT2G27110.3 FRS3 (FAR1-RELATED SEQUENCE 3); zinc ion binding similar to FRS5 (FAR1-RELATED SEQUENCE 5), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G38180.1); similar to FAR1; Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE89491.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) -0.135610097338232 -1.50680386434287 0.168510847937938 1 1.81771732285470 11.9716110065361 -0.135610097338232 0.0859907269473214
AT3G16220_at 9.84210254843818 9.71868813782765 10.1258839628005 9.89889135086978 10.3212332487347 10.0350642773627 9.84867820678089 9.58905577760636 9.56744559002778 9.5612009952838 9.7971251122635 9.49359696218136 9.65190654411568 9.47775005118589 9.24581324198877 9.87356554943789 9.51719583539743 9.32483512977148 9.76020969875262 0.0849565132126093 0.0849588808258175 0.0869905457638264 0.0872484243204438 0.0916262275204208 0.0868807273731724 0.090525160539421 0.092335047416964 0.0923592437211163 0.0903696005211196 0.0849565132126093 0.0849565132126093 0.090226357439996 0.0953725603058292 0.0872853448288319 0.0849565132126093 0.0933633197952804 0.0906984931752106 0.0887371332414611 3 3|0 +|/ 5498177 5499049 5498700.556 5497603 5499241 + gene protein_coding_gene FALSE TRUE AT3G16220.1 similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G16230.1); similar to Os01g0231800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042498.1); similar to At3g16220-related [Medicago truncatula] (GB:ABE80927.1); similar to Os01g0231900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042499.1); contains InterPro domain Predicted eukaryotic LigT; (InterPro:IPR009210) 0.131870917108335 1.50676036870084 0.168521791388207 1 1.81766406351427 19.5111208461263 0.131870917108335 0.0804384527596255
AT4G24940_at 8.71580306076382 8.79664590347795 8.81228069295408 8.8207523738207 8.97500509527798 8.72794298090103 8.8069745922718 8.84306756970756 7.69199056628304 8.1042378819531 8.30363296861553 8.45036612476675 8.05409672054188 8.19440597306108 8.27141087877305 8.0724521957293 8.16382059303558 8.26980602742709 8.32731977135213 0.152528843015234 0.157508432504975 0.156505549668711 0.168220704087012 0.154863903708098 0.163104472054706 0.156186632257222 0.160216817637578 0.191167469358034 0.152844802760103 0.159200428499857 0.153803943811565 0.167997259191641 0.164746263154081 0.173328131538563 0.155765266789882 0.170832045291344 0.157597639898959 0.15468076919456 4 4|0 +|/ 12824751 12825952 12825422.2 12823506 12826210 + gene protein_coding_gene FALSE TRUE AT4G24940.1 SAE1A (SUMO-ACTIVATING ENZYME 1A); SUMO activating enzyme Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. similar to SAE1B (SUMO-ACTIVATING ENZYME 1B), SUMO activating enzyme [Arabidopsis thaliana] (TAIR:AT5G50580.2); similar to SUMO activating enzyme 1b (SAE1b) [Arabidopsis thaliana] (TAIR:AT5G50680.1); similar to ubiquitin activating enzyme [Solanum lycopersicum] (GB:CAA09619.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) 0.112344349782096 1.50643209999625 0.168604403772899 1 1.81726213343696 16.9441498712001 0.112344349782096 0.0454411778863692
AT3G08620_at 4.57997556194695 4.87439817071849 5.20673435781901 5.23450272090007 5.04693323354476 4.62165255761261 4.94722443753197 5.06402486905869 4.46457784961006 4.86115680434867 4.63024398217204 4.50659553069672 4.43195624955505 4.73036065769975 3.81242560446715 4.63188921247043 4.25124197657162 4.23061662727890 5.20491000051315 0.201693752214219 0.212421382984543 0.201859101265285 0.209571924062615 0.201693752214219 0.215525171334405 0.217545857051201 0.209627668890797 0.210308962632720 0.205469535111814 0.211147118471909 0.204720407566082 0.204689747585234 0.207591778654200 0.218710016245811 0.201948794105740 0.209507826977018 0.204734886002941 0.201693752214219 3 3|0 +|/ 2618680 2620268 2619618 2617774 2620579 + gene protein_coding_gene FALSE TRUE AT3G08620.1 KH domain-containing protein similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G38610.2); similar to hypothetical protein [Nicotiana tabacum] (GB:BAD06470.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) -0.139666015194124 -1.50608695003589 0.168691303333942 1 1.81683958521457 9.5702879627772 -0.139666015194124 0.0918921484804991
AT1G22360_at 7.1864909422255 7.6643203071433 6.5084858520079 6.65818000531782 7.95360397905302 7.35480660147753 7.2361428939377 7.3084708751055 6.89249827640849 7.51461505860286 7.37634315411687 7.60707444798848 6.90669389917973 7.28765639245907 6.89347345873319 6.97836508132104 6.34234926696568 6.6472109798446 6.9600439925641 0.155980746085045 0.156948806001444 0.152316206401439 0.158500293373470 0.157995209831205 0.157516041641134 0.149689286876132 0.149538126798705 0.153625678683327 0.156069689201033 0.156041555801848 0.153299972693012 0.151422597526861 0.154120730054622 0.158788172933532 0.149576083204224 0.167701060165266 0.152493679837800 0.149538126798705 1 1 - 7895066 7895632 7895382.909 7894847 7897580 - gene protein_coding_gene FALSE TRUE AT1G22360.1|AT1G22360.2 UDP-glucoronosyl/UDP-glucosyl transferase family protein|UDP-glycosyltransferase similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G22380.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); similar to glycosyltransferase NTGT5a [Nicotiana tabacum] (GB:BAD93689.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213)|similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G22340.1); similar to transcription factor/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G22380.1); similar to UGT85A1 (UDP-glucosyl transferase 85A1), UDP-glycosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT1G22400.1); similar to glycosyltransferase NTGT5b [Nicotiana tabacum] (GB:BAD93690.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.173788542960664 -1.50452724092015 0.169084493146969 1 1.81493077310937 14.2974534875008 -0.173788542960664 0.135659721882992
AT1G27090_at 8.29396726259635 8.77653683917528 8.03429767375293 8.38198194875346 8.48773920453366 8.41883167796406 8.05901731571512 8.53616661191263 8.73011789471187 8.53024598583845 9.45275654786854 8.82064731682896 9.0438637926953 9.14201809820275 8.96159024839296 9.0891306330469 8.68528710411415 8.61087985152482 8.38325331467843 0.148769351526905 0.143015735706215 0.169556351990688 0.155993381672508 0.14525241440244 0.162780632902175 0.142092417031150 0.152144039005693 0.155862255680682 0.154000035786301 0.141653260618664 0.141653260618664 0.144483504671021 0.149644259916715 0.143470849865204 0.141653260618664 0.152816839079767 0.145976761718701 0.142940260613869 1 1 - 9404032 9405274 9404747.091 9403887 9406243 - gene protein_coding_gene FALSE TRUE AT1G27090.1 glycine-rich protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24690.1); similar to Os03g0688200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050943.1); similar to hypothetical protein LOC_Os11g11180 [Oryza sativa (japonica cultivar-group)] (GB:ABA92081.1) 0.171094959787946 1.50416759106293 0.169175273381932 1 1.81449077657081 17.1353893655474 0.171094959787946 0.132494503307000
AT3G22425_at 5.26744248723418 5.86216987237545 5.50735040216675 5.33605386619856 5.48131591606403 5.01564141787632 5.68112595347257 6.36457015976987 4.87479410608944 4.24362630780243 5.3652555403661 5.65823308586114 5.35769649338675 5.74663703526528 4.63294245669063 6.14946490547138 5.02701000079347 5.10045110364001 4.37479786850554 0.252022946123413 0.23855793455949 0.254768260647461 0.238847230985277 0.244289469410817 0.249157581892175 0.23855793455949 0.244879642960183 0.252602037850618 0.24200105104191 0.248839722915745 0.23855793455949 0.251990921258201 0.244939053481629 0.238739039113743 0.23855793455949 0.265636050200554 0.240824452111146 0.246544638720951 3 3|0 +|/ 7951525 7952609 7952176.778 7951062 7953230 + gene protein_coding_gene FALSE TRUE AT3G22425.1|AT3G22425.2 imidazoleglycerol-phosphate dehydratase 1 (IGPD1) Identical to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1) [Arabidopsis Thaliana] (GB:P34047;GB:Q8VYM1); similar to IGPD (Imidazoleglycerol-phosphate dehydratase) [Arabidopsis thaliana] (TAIR:AT4G14910.2); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazoleglycerol-phosphate dehydratase; (InterPro:IPR000807)|Identical to Imidazoleglycerol-phosphate dehydratase 1 (EC 4.2.1.19) (IGPD 1) [Arabidopsis Thaliana] (GB:P34047;GB:Q8VYM1); similar to IGPD (Imidazoleglycerol-phosphate dehydratase), imidazoleglycerol-phosphate dehydratase [Arabidopsis thaliana] (TAIR:AT4G14910.1); similar to imidazoleglycerol phosphate dehydratase [Thlaspi goesingense] (GB:AAC83458.1); contains InterPro domain Imidazoleglycerol-phosphate dehydratase; (InterPro:IPR000807) 0.211617591290971 1.50405628706842 0.169203376711206 1 1.81435461855148 10.5031841369698 0.211617591290971 0.178757333062267
AT1G78550_at 7.31434043646146 7.35962637812667 7.55158122673795 7.5971285877403 7.24566741088706 6.82818865102297 6.24799866939429 5.71903058485282 6.82240555189211 6.15781869623411 6.72259798082762 6.6729324306722 5.78728883215871 6.20763643130662 5.82800862200599 5.92411573662906 5.94020739061795 6.36980854426713 6.5494244061815 0.233368363192801 0.239064612143317 0.239754770786734 0.245068979338339 0.238459566288791 0.252782433159947 0.257644078436346 0.23623067796078 0.241926680667407 0.234717536820292 0.233368363192801 0.235460428776731 0.233631259568779 0.249356161837686 0.241302994047992 0.237921278716683 0.242378170478812 0.244701511502643 0.246489813810495 1 0|1 /|- 29549930 29550434 29550199.4 29549820 29551380 - gene protein_coding_gene FALSE TRUE AT1G78550.1 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to SRG1 (SENESCENCE-RELATED GENE 1), oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors [Arabidopsis thaliana] (TAIR:AT1G17020.1); similar to putative ethylene-forming enzyme [Oryza sativa] (GB:AAL79798.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.158542031589840 1.50389973922063 0.169242910755691 1 1.81416312304549 13.3286739335679 0.158542031589840 0.117144219475343
AT2G41620_at 6.06079711793373 6.3913384508027 5.91553944538105 6.40769868744743 6.70713037650779 6.55956508896197 6.40861425919406 6.35330817174742 5.83445798828065 6.30574959698162 5.61069276108168 5.88548417847832 5.71670502220371 5.72991980905508 5.4238123970897 5.56827023316777 6.1032530265965 5.84140211837178 6.24596933289073 0.208053642148478 0.188707197105484 0.208558358200026 0.207532370565654 0.200305762910589 0.191307218342929 0.189262007502794 0.193426424028229 0.211201832592532 0.191587748049389 0.201097860287035 0.188645055330164 0.195743329078889 0.194956741187655 0.208501614848553 0.186706977322099 0.200950869469242 0.192207603260504 0.193141138182232 2 2|0 -|/ 17357674 17358327 17357958.1 17357223 17362162 - gene protein_coding_gene FALSE TRUE AT2G41620.1 nucleoporin interacting component family protein Identical to Uncharacterized protein At2g41620 [Arabidopsis Thaliana] (GB:O22224;GB:Q94CF2); similar to nucleoporin interacting component-related [Arabidopsis thaliana] (TAIR:AT3G57350.1); similar to Nucleoporin interacting component; Protein prenyltransferase [Medicago truncatula] (GB:ABD28395.1); similar to Os03g0349000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050106.1); contains InterPro domain Nucleoporin interacting component; (InterPro:IPR007231) -0.149907148236840 -1.50318752459726 0.169422874558793 1 1.81329205063252 12.2823329910670 -0.149907148236840 0.106159208161584
AT4G17560_at 8.91832470500043 9.06523344648314 7.76388062109974 7.86279356146991 8.98479281567596 8.45940197227291 9.19351236087141 8.88313549129107 8.80608567583869 9.35423520115397 9.54886609535501 10.0534975649433 9.32772307696424 9.37985888963777 10.3197716419434 9.6350798919574 9.51251405710044 8.69566995091785 9.1915863568409 0.140432002705004 0.140152484756847 0.145449275031841 0.157653701847548 0.143789675734412 0.151321096200018 0.143000640487739 0.140152484756847 0.163833961293384 0.143723038176699 0.143423889392696 0.140679832753662 0.140152484756847 0.148532751467925 0.140152484756847 0.141271106271065 0.14046550870764 0.149211481580069 0.144048162698272 4 4 + 9780524 9781727 9780838 9780292 9782196 + gene protein_coding_gene FALSE TRUE AT4G17560.1 ribosomal protein L19 family protein Identical to 50S ribosomal protein L19-1, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8W463;GB:O23597); similar to ribosomal protein L19 family protein [Arabidopsis thaliana] (TAIR:AT5G47190.1); similar to plastid ribosomal protein L19, putative [Brassica oleracea] (GB:ABD65070.1); contains InterPro domain Ribosomal protein L19; (InterPro:IPR001857) -0.152757011728653 -1.50250563715151 0.169595334506236 1 1.81245827983733 17.9795969004607 -0.152757011728653 0.109959223116602
AT4G37040_at 9.07334958106746 9.03467500984237 8.92982145657782 8.89364323538593 9.2497408598385 8.66382587787134 9.63416698517875 9.44177393929779 9.57443163916753 9.53660528279268 9.51495745079027 9.71272215116629 9.36829253258782 9.57988536410667 9.93608415187827 9.8169511185314 9.22641108737422 9.41503822410135 9.4204046812969 0.123518264540506 0.123492917244886 0.125286153613662 0.121407306469583 0.115783022671982 0.129304398428292 0.121910322327029 0.115783022671982 0.130276607029516 0.115783022671982 0.122594274321284 0.120068144173538 0.121037795656883 0.121789386159051 0.120724951630184 0.120511153261286 0.122232428060753 0.132331794768379 0.120623408077044 4 4|0 +|/ 17456017 17457024 17456588.5 17455133 17457351 + gene protein_coding_gene FALSE TRUE AT4G37040.1 MAP1D (METHIONINE AMINOPEPTIDASE 1D); metalloexopeptidase encodes a methionine aminopeptidase Identical to Methionine aminopeptidase 1D, chloroplast/mitochondrial precursor (EC 3.4.11.18) (MetAP 1D) (MAP 1D) (Peptidase M 1D) (MAP1D) [Arabidopsis Thaliana] (GB:Q9FV50;GB:Q9SW64); similar to MAP1C (METHIONINE AMINOPEPTIDASE 1B), metalloexopeptidase [Arabidopsis thaliana] (TAIR:AT1G13270.1); similar to Os04g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053830.1); similar to Putative Xaa-Pro aminopeptidase (ISS) [Ostreococcus tauri] (GB:CAL55082.1); similar to Os02g0761700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048199.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994); contains InterPro domain Peptidase M24, methionine aminopeptidase; (InterPro:IPR001714); contains InterPro domain Peptidase M24A, methionine aminopeptidase, subfamily 1; (InterPro:IPR002467) -0.150460647890095 -1.50143107689090 0.169867423998841 1 1.81114478986011 18.6560112653755 -0.150460647890095 0.107114551439678
AT3G10360_at 7.34645995597446 7.4021591443257 7.29581821860051 7.12911748657698 7.67147829121424 7.56993557566409 7.93925134720794 7.05256221076716 6.53634524855721 6.99159327764029 7.27037204283697 7.67238600782819 7.02500669496056 6.98671923882337 7.14420111811079 7.16919370243006 7.13415606425364 6.73798261444797 6.69111492590347 0.220204325859866 0.220239078932663 0.223559127451107 0.227495504578779 0.236431123853049 0.225391162101684 0.233816286441205 0.219580848872516 0.251757726507443 0.224605218774078 0.227625561461717 0.233020369366240 0.218457762631513 0.232314233285252 0.233419398065705 0.218457762631513 0.223703166269203 0.234550217240796 0.222258679407357 3 3 - 3211303 3211959 3211561.875 3210889 3215149 - gene protein_coding_gene FALSE TRUE AT3G10360.1 APUM4 (ARABIDOPSIS PUMILIO 4); RNA binding similar to APUM1 (ARABIDOPSIS PUMILIO 1), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29200.1); similar to APUM3 (ARABIDOPSIS PUMILIO 3), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29140.1); similar to APUM2 (ARABIDOPSIS PUMILIO 2), RNA binding [Arabidopsis thaliana] (TAIR:AT2G29190.1); similar to putative pumilio domain-containing protein PPD1 [Oryza sativa (japonica cultivar-group)] (GB:BAB89558.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABE87830.1); similar to Nucleic acid binding NABP [Medicago truncatula] (GB:ABD33134.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Nucleic acid binding NABP; (InterPro:IPR012940); contains InterPro domain Pumilio/Puf RNA-binding; (InterPro:IPR001313) 0.192148464936465 1.50138495613407 0.169879110911173 1 1.81108842553910 14.3669411135389 0.192148464936465 0.157415080745779
AT3G15780_at 7.32402474259534 7.72141483080919 7.86884211191084 7.92606504247392 7.58582819247282 8.2634917744396 7.8079040033941 8.49171117244511 7.6031700236232 8.24019211615627 6.8849502009693 6.54147887081804 8.08056629252247 7.6502682618627 6.46523820107236 8.27322251573133 8.57651003023214 7.3244053048873 8.08168789975378 0.179259535994258 0.166611494200922 0.170744318761594 0.178637682661528 0.170114790564395 0.173501596448794 0.173113881668504 0.178345247514976 0.183231087464550 0.173008992253858 0.185897900659543 0.172165643019805 0.177455694639337 0.180268597821610 0.17683306631054 0.176815775864176 0.172199895617201 0.167635047894475 0.171452188435872 3 3|0 +|/ 5341625 5342332 5342196.222 5341433 5342564 + gene protein_coding_gene FALSE TRUE AT3G15780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52550.1); similar to Os01g0392100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043115.1) -0.212821813534551 -1.50128921317018 0.169903374276339 1 1.81097142077139 15.5984585536208 -0.212821813534551 0.1805096624893
AT4G33360_at 6.81271612346017 6.62545632150196 6.07769959492769 6.34098452927742 5.29554809399301 5.02535872301481 4.32723427166585 4.60988952762714 5.40163304039735 4.86573232172137 5.55276986493274 5.91500851029501 3.95634396309286 5.35582912422536 6.12743118318188 4.52462702843282 3.88341082275057 5.37852597513329 4.44808401887549 0.214206366385502 0.227132155695549 0.218277608030101 0.213952304302494 0.212616157119713 0.232458851569634 0.218730817617376 0.214345859068561 0.236749101064624 0.217207581979091 0.212616157119713 0.212616157119713 0.225850610788226 0.220551709382797 0.222860817211552 0.212616157119713 0.240147636882421 0.228222816339492 0.218777931947349 4 4|0 -|/ 16068015 16068715 16068394.1 16067675 16069377 - gene protein_coding_gene FALSE TRUE AT4G33360.1 terpene cyclase/mutase-related similar to cinnamyl-alcohol dehydrogenase family / CAD family [Arabidopsis thaliana] (TAIR:AT1G09490.1); similar to Putative dihydroflavonal-4-reductase [Oryza sativa] (GB:AAK92621.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.136333594790141 1.50119568417761 0.169927079544007 1 1.81085712555564 10.6353074495187 0.136333594790141 0.0877783818649566
AT3G47590_at 7.79515201537833 8.08117345993902 7.96807141815022 7.92894514097171 8.55344614483776 7.88719275708385 8.47343407904919 8.29578738352408 7.77972126523304 8.06054053512131 8.57402806885777 8.46091766388894 8.29639432467884 8.25630168254487 7.96175048712716 8.13955218249392 7.94735958547674 8.2749393941479 7.63718902700852 0.179256085561743 0.179599646850755 0.188656612008861 0.184301945142201 0.179354031167024 0.180941079516888 0.177963744864922 0.179141423779730 0.181762634552699 0.179567112625846 0.183024677902863 0.174192920831887 0.184481263070252 0.182074029338978 0.180605044459923 0.179238218125192 0.189618558969063 0.183531783118881 0.186107353234716 3 3 - 17547162 17547759 17547501.455 17546744 17548515 - gene protein_coding_gene FALSE TRUE AT3G47590.1 esterase/lipase/thioesterase family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G29840.1); similar to esterase/lipase/thioesterase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44964.1); similar to Os01g0579900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043402.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.168057805992981 1.50028578108049 0.170157851140005 1 1.80974539913879 16.1552614829199 0.168057805992981 0.129362390292781
AT3G61060_at 10.4996993293603 10.4686504377408 11.4475839314875 11.4144518371136 12.1640536814957 11.7184268655004 11.1300611790591 10.9524761022771 10.4054605039410 10.8431544132371 9.83413174737696 9.07234627845342 10.5947550991632 10.5708696356629 7.49696812410062 10.5679728743833 11.1231442232816 10.4880201337571 10.6276312029510 0.0802827620276031 0.0803304660105968 0.0850979050525699 0.0822066168649435 0.0874126650981644 0.0805991931178452 0.0953645370419712 0.0809282259461839 0.0896081111791984 0.0798680577998914 0.0806547115199982 0.0860628879570096 0.0814208947622906 0.084693279945312 0.119254536882634 0.0802674369744535 0.0881012768434007 0.0839422550045873 0.081984823737508 3 3 + 22614428 22615243 22614909.364 22613885 22615553 + gene protein_coding_gene FALSE TRUE AT3G61060.1|AT3G61060.2 ATPP2-A13 similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE86301.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810)|similar to ATPP2-A12 (Phloem protein 2-A12) [Arabidopsis thaliana] (TAIR:AT1G12710.1); similar to Cyclin-like F-box; Galactose-binding like [Medicago truncatula] (GB:ABE86301.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.133258978967984 1.5002602104735 0.170164340430547 1 1.80971416208148 21.5213961144537 0.133258978967984 0.0833867606608741
AT2G32160_at 11.4155514958644 11.2715097963199 11.7067977354834 11.6661490970501 11.4241512888812 11.2740412323257 11.7420600390433 11.3790349622329 11.9013531514916 11.3455560683574 11.0888484541275 10.6952905449651 11.3596326491911 11.4513991122286 10.9266061731574 11.6734378038857 11.6835969304055 11.4809625863540 11.5922439701067 0.0583574409846202 0.0568954202943271 0.060748722487231 0.0569722264521009 0.0602142217343773 0.0593090647681585 0.0610838775641247 0.060170611450017 0.0675557769939456 0.0594211495297856 0.0575407099427053 0.0580514689438762 0.0596945446189936 0.0609385025539642 0.0590966580533459 0.0568954202943271 0.0617536444984789 0.0596436114397399 0.0589516491047741 2 2 + 13672103 13673149 13672564.273 13669290 13673346 + gene protein_coding_gene FALSE TRUE AT2G32160.1|AT2G32160.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32170.1); similar to Os05g0511300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056014.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF92601.1); contains InterPro domain N2227-like; (InterPro:IPR012901) -0.126166758229602 -1.49746175421872 0.170875859621826 1 1.80629732171861 22.9389233784541 -0.126166758229602 0.0727489694692549
AT1G60870_at 8.16785831907714 8.57326075630822 8.3428298613046 8.36948296426847 8.9158634166125 8.92172394551009 7.90159121019164 8.36296571956372 8.12032698367525 8.21912233070291 8.2664367209857 7.84191632647301 8.1816027900924 8.29750081500695 7.77904493536727 8.4694340462274 8.14805367450452 7.67523359665238 8.16991072689976 0.163283944910915 0.168336221318068 0.172145610349503 0.171009051310408 0.187082139751241 0.162757792764377 0.160808874159851 0.167976001863684 0.175686252094842 0.163745594347349 0.157623484658834 0.160566979953876 0.157913644017352 0.168457921876079 0.170498997597314 0.16099056420981 0.174638122568967 0.176985571029335 0.164747722102921 1 1 + 22413380 22413832 22413603.818 22413137 22414319 + gene protein_coding_gene FALSE TRUE AT1G60870.1 MEE9 (maternal effect embryo arrest 9) 0.149336114188231 1.49569327611743 0.171326862653534 1 1.80413985321659 16.5705417958994 0.149336114188231 0.106391652371668
AT3G03160_at 7.52387913102867 7.43351976112374 7.24781955258508 7.29760935939958 7.26129548141173 6.98034549898125 6.93896938638965 7.46811476526496 7.09951109125926 6.57625435344883 7.00661286907497 7.29186608164834 7.32585826333272 7.49832523831351 7.58020643966604 6.91200512277025 6.94017202056914 7.0609884071668 6.60794919554564 0.153929146015765 0.152626473787724 0.162043177797004 0.154772764456544 0.153886639457328 0.171503229809895 0.152591316576758 0.156379743121049 0.162680233906715 0.154334835986318 0.155865097291631 0.155014684808830 0.158629283394137 0.156468360648067 0.155332975179487 0.156410568347083 0.161392140820431 0.157821069351809 0.158552987629600 3 3 + 729886 730182 730031.636 729775 730474 + gene protein_coding_gene FALSE TRUE AT3G03160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17190.1); similar to Erwinia induced protein 2 [Solanum tuberosum] (GB:AAO32066.1) 0.148206402021234 1.49336910195002 0.171921186375814 1 1.80130658008751 14.2505653763909 0.148206402021234 0.105204079945264
AT3G23325_at 8.4074370307926 9.17794808736582 8.7202918057768 8.86565649370341 9.71855651156877 8.63937027468012 9.20948417091747 9.29629499836375 8.59660770636668 8.13734986983963 9.20041116151164 9.4103635240643 8.88663429828226 9.27068615639904 8.75398272609429 9.2273707501098 8.75907381944826 8.46347799269258 8.5914856323503 0.198691832297756 0.186266777802609 0.192418279523816 0.205833727742079 0.187245004879331 0.197126622273824 0.1926633615158 0.194093295884371 0.225023502912348 0.192389389048504 0.192338534323002 0.186114613815934 0.188471422716525 0.188255506123103 0.203854375907136 0.187768789995691 0.193181055539794 0.198899042366603 0.186611999810869 3 3 + 8346025 8346830 8346308.5 8345778 8347069 + gene protein_coding_gene FALSE TRUE AT3G23325.1 splicing factor, putative Identical to Protein At3g23325 [Arabidopsis Thaliana] (GB:Q9LW64); similar to pre-mRNA splicing factor 10 kDa subunit, putative [Arabidopsis thaliana] (TAIR:AT4G14342.1); similar to Os08g0444100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061922.1); similar to Splicing factor 3B subunit 10 [Medicago truncatula] (GB:ABE90187.1); contains InterPro domain Splicing factor 3B subunit 10; (InterPro:IPR009846) 0.258931675147713 1.49333199301202 0.171930690455149 1 1.80126136218991 17.7235371498598 0.258931675147713 0.231337079303888
AT4G12760_at 6.41758155364452 7.03828492890387 7.09119494893257 7.10810578784629 7.51902727711352 7.16638376076324 6.74312280279436 6.44156222077892 6.15272083615345 6.20691088548687 6.19560143362295 6.41913076996332 5.6318571915879 6.55049570354344 5.53782408164244 6.57486681577549 6.27219185933602 6.09362603269935 6.77454555812376 0.223492739203444 0.206849787306341 0.212192311868450 0.211620619400951 0.210856967021942 0.213669992036706 0.216012265359544 0.211601655072446 0.213527639517176 0.223690083092441 0.206232653007012 0.207500318862555 0.217114550644225 0.224731349374315 0.236270307901072 0.207425294399088 0.223358842197005 0.21564426793257 0.217553973086965 4 4 + 7505275 7506000 7505730.909 7504873 7506088 + gene protein_coding_gene FALSE TRUE AT4G12760.1 similar to Os05g0417300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055562.1) 0.17121510495008 1.49319304488858 0.171966281004937 1 1.8010920569121 13.2094120747352 0.17121510495008 0.134143028882807
AT4G34555_at 4.63021317763286 5.1247991790596 4.16608286759466 4.46270964299380 4.79505909770852 4.19164780375819 5.01306772155554 4.82581351625094 4.90996330496054 4.65129319608596 5.02540842416372 5.35020602383388 4.47733440842319 4.97784013638852 5.29896894323602 4.75550601157757 4.63900799033505 4.65769076647211 4.74533959198756 0.191755653288665 0.200596078709125 0.207342391142245 0.196277691906517 0.192421909223073 0.203982656654542 0.188206132079701 0.194291107492066 0.200271506739591 0.193042398519385 0.198161882075567 0.193848869450151 0.193492954232609 0.195668468470245 0.198946901701138 0.190241827271157 0.212206234715225 0.194416073480788 0.189376457705566 4 4|0 -|/ 16504387 16505219 16504830.9 16504235 16505477 - gene protein_coding_gene FALSE TRUE AT4G34555.1 40S ribosomal protein S25, putative Identical to 40S ribosomal protein S25-3 (RPS25D) [Arabidopsis Thaliana] (GB:Q8GYL5;GB:Q8L955); similar to 40S ribosomal protein S25 (RPS25E) [Arabidopsis thaliana] (TAIR:AT4G39200.1); similar to 40S ribosomal protein S25-1 (GB:Q9SIW5); contains InterPro domain S25 ribosomal protein; (InterPro:IPR004977) -0.182859285950935 -1.49229689006807 0.172195981456543 1 1.80000031916126 9.48447947701848 -0.182859285950935 0.148037324291878
AT1G01930_at 6.29969243480158 6.26935968740046 6.3758978737761 6.41910461477853 6.54119353314757 6.34962307624555 6.16027184356036 6.31864510049426 6.35787740453532 6.33078684331891 5.75729015040893 5.88361218525504 5.81148988649927 6.15708769784097 6.20312104556255 6.29603573508807 5.47418185594348 6.02054625544107 6.30484737171507 0.195747284041203 0.198108332974720 0.191928297851544 0.195183460379998 0.192291094734620 0.203720018993724 0.189485809570001 0.201929144733591 0.202568147011752 0.192572832024274 0.195657108637999 0.192142302477535 0.195978377377353 0.192617425806534 0.199003597183339 0.191326122805262 0.217778670694742 0.202335857014114 0.188923425536828 1 1 - 320063 321080 320699.636 319836 322860 - gene protein_coding_gene FALSE TRUE AT1G01930.1 zinc finger protein-related similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG09306.1); similar to Os04g0574600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053619.1); similar to OSJNBa0019K04.19 [Oryza sativa (japonica cultivar-group)] (GB:CAD41672.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.110643715214367 -1.4920339921309 0.172263418451266 1 1.79968011277887 12.4825190912062 -0.110643715214367 0.0439736724257810
AT2G35500_at 7.73876030117282 7.43868534502662 6.77593788828892 6.61635329762198 7.53796666173263 7.50942771384765 8.11087470357123 7.7965192073884 7.31769725227244 7.8768407874609 7.75945394926498 8.36772136998014 7.63671235403279 7.82731738278734 8.94752115036746 7.89808774440075 8.08682932200371 7.90913255619761 7.76658683996894 0.134600955361404 0.133379869698903 0.142094748671566 0.138194501622284 0.134116059255084 0.132437677760312 0.133314023934304 0.136991015008719 0.156183209903886 0.137093179417981 0.141380324219380 0.134583127300129 0.132437677760312 0.140565150560068 0.138332125857785 0.140099586755261 0.135294161300262 0.143994466164437 0.137368671923390 2 2|0 +|/ 14921980 14922960 14922708.889 14921082 14923214 + gene protein_coding_gene FALSE TRUE AT2G35500.1 shikimate kinase-related similar to shikimate kinase family protein [Arabidopsis thaliana] (TAIR:AT3G26900.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58188.1); similar to Os10g0577700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065493.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052) -0.130449906760853 -1.49178432732972 0.172327482627993 1 1.79937605284356 15.294468275763 -0.130449906760853 0.080269400071484
AT3G56120_at 4.8686781772997 4.85627605979198 4.33169986530114 4.26425611493798 5.47451646312031 4.35134997033764 5.43162387913496 5.2751009831073 4.6220257654512 4.69838424488876 4.81494751499572 4.82597784382224 4.85843550748576 4.72228448627605 5.11651657135398 4.67261566253398 4.77269236337662 5.12564366829513 5.11797616642568 0.189030337349581 0.189049723349309 0.191420745185156 0.194756426367473 0.190193033794314 0.187484608513769 0.184671680561988 0.190058734088399 0.192888478834641 0.192421485089947 0.189801820221989 0.186642526093773 0.185928444488344 0.191120621639882 0.189950838247109 0.187451145882550 0.202884948261115 0.191240878749 0.183685394347563 3 3|0 +|/ 20836037 20837279 20836602.3 20834129 20837522 + gene protein_coding_gene FALSE TRUE AT3G56120.1 Met-10+ like family protein similar to Met-10+ like family protein [Arabidopsis thaliana] (TAIR:AT4G27340.1); similar to putative met-10+ protein [Oryza sativa (japonica cultivar-group)] (GB:BAD20131.1); contains InterPro domain Protein of unknown function Met10; (InterPro:IPR003402) -0.225810180698498 -1.48938411617826 0.172944456447669 1 1.79645432709202 9.6949049863902 -0.225810180698498 0.196606005942695
AT2G46550_at 10.0648134257779 10.1214940016380 10.2620274672079 10.1100244066152 10.9427940715472 9.98993819423964 10.1168769684773 9.93387215542031 9.7371113760609 9.717308282599 9.86314040904965 9.66570064542082 9.87039629898122 9.80652091767529 9.46134075177188 9.6957286659409 10.0352607952214 9.66848670757735 9.40994020690947 0.120405841876626 0.116720272111462 0.122557539582867 0.116720272111462 0.126168781690699 0.131651623213298 0.122916005796857 0.1189342874538 0.129707159063511 0.117810393020125 0.123563522195838 0.123134239216390 0.124741718557919 0.127158116053288 0.117217737202349 0.120965738097298 0.131301828279491 0.120246190137726 0.123897993661842 2 2 - 19119365 19119848 19119614.273 19119061 19121245 - gene protein_coding_gene FALSE TRUE AT2G46550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01240.3); similar to Os09g0363500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062992.1); similar to Os08g0400300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061754.1); similar to hypothetical protein MtrDRAFT_AC145165g14v1 [Medicago truncatula] (GB:ABE91800.1) 0.201900253752911 1.48922201203843 0.172986195735403 1 1.79625709440197 19.8826176801044 0.201900253752911 0.170240646771474
AT4G32720_at 5.4553315794307 5.33677877845589 5.56204364411081 5.44823204702657 5.2683668080031 5.37799911151107 5.05552807788954 4.63651974840767 4.76766452578507 4.65424816438779 4.7986713993565 4.82063055875426 4.90783246733988 4.33555412321287 5.05382412858862 4.97163165563831 5.11972025201724 4.40659380911465 5.08206775932487 0.190069761826672 0.187970283293273 0.190666626995759 0.190765424658714 0.193958511027129 0.188934461915033 0.187531229145309 0.200267278632530 0.192687396653322 0.195811682571394 0.196241611727889 0.191309236431342 0.189425134054230 0.188442763185328 0.19713493153698 0.192025411468436 0.192091787402018 0.205766266027048 0.187472262387723 4 4 + 15788795 15789646 15789175.636 15787214 15789982 + gene protein_coding_gene FALSE TRUE AT4G32720.1|AT4G32720.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G79880.1); similar to OSIGBa0092E01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67515.1); similar to Os04g0497600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053207.1); similar to hypothetical protein DDBDRAFT_0204655 [Dictyostelium discoideum AX4] (GB:XP_640625.1); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Lupus La protein; (InterPro:IPR002344); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.130134003018577 1.48893703321035 0.173059594967813 1 1.79591038826222 10.0858336988971 0.130134003018577 0.0801665467975623
AT1G33520_at 7.44211697763517 7.3520026686916 7.40972924672066 7.26757327277987 7.78574109448104 7.24102048023353 7.11507127976638 7.32296966075804 7.4501684342998 7.34214076028399 7.01613117052365 7.03791974148726 6.94852704539669 7.04787859788621 7.0492197642026 7.18129131287208 6.71146475571718 6.83816883755679 7.38320709195189 0.155043360007579 0.164399505797285 0.159642452082096 0.164734341752547 0.168390318427113 0.160887525928852 0.158291292506076 0.164845243105112 0.164692277902896 0.169862448967277 0.159422540882524 0.155043360007579 0.162208197707088 0.160783517084712 0.165212763307534 0.157492726864613 0.162601373810254 0.160100434482911 0.161613930881882 1 1 - 12157496 12158001 12157689.909 12157136 12158933 - gene protein_coding_gene FALSE TRUE AT1G33520.1 MOS2 (MODIFIER OF SNC1, 2); RNA binding / nucleic acid binding / protein binding Has single homolog in Arabidopsis, also homologs in human, mouse and C. elegans; contains one G-patch domain (known to mediate RNA-protein interactions) and two KOW domains (may bind RNA and/or protein); localized to the nucleus; mutant suppresses high SA levels and constitutive disease resistance in snc1 npr1 background; required for basal resistance against Pseudomonas syringae maculicola ES4326 and R gene-mediated resistance specified by RPM1, PPS4 and RPP4; Identical to Protein MOS2 (MOS2) [Arabidopsis Thaliana] (GB:Q9C801); similar to KOW domain-containing protein / D111/G-patch domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25020.1); similar to Os03g0253500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049580.1); similar to G-patch domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95011.1); contains InterPro domain KOW (Kyrpides, Ouzounis, Woese) motif; (InterPro:IPR006646); contains InterPro domain Translation protein SH3-like; (InterPro:IPR008991); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.147518866066139 -1.48784277256891 0.173341689397477 1 1.79457944661464 14.5523600428252 -0.147518866066139 0.105018831782221
AT3G62630_at 6.6516991426198 7.0243217707402 6.30925604523763 6.10499225656577 7.59120260236103 7.67169971482243 6.28242209521632 6.56129006862404 7.06703299036533 6.31397450296675 7.84205645483319 7.13019885563298 7.17772240372448 7.0239617104348 6.79460886466058 6.51116004543795 5.36709396851675 6.36003674191084 6.99882789436292 0.230364180781068 0.222070542584934 0.234577482706456 0.233907061554588 0.237594706147764 0.231570688964281 0.223280066802103 0.230137578356045 0.238819949086334 0.230311459097655 0.228259924802641 0.236276098622667 0.228029159101037 0.240988486517548 0.234622090608641 0.227798660702817 0.24839794974978 0.227360896234370 0.223544234178763 3 3 - 23174918 23175408 23175145 23174723 23176171 - gene protein_coding_gene FALSE TRUE AT3G62630.1 similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT2G15760.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84267.1); contains InterPro domain Protein of unknown function DUF1645; (InterPro:IPR012442) 0.135965401762783 1.48747949799389 0.173435429579351 1 1.79413771737839 13.5591771336279 0.135965401762783 0.0890548194883659
AT1G20830_at 4.42584084438821 4.70687041846746 4.61185845031846 4.27573818947347 4.69563958142785 3.94974401366991 5.70328475433678 5.51081509833248 4.97822661625123 5.15953381669987 4.87361885225178 5.85687710770867 5.39707560621808 5.39769716964305 5.53745827595339 5.47908536300278 5.11491353038142 5.10343329540455 4.90788941538614 0.192513315323827 0.194016979750542 0.200077710277153 0.197521002069482 0.200980250771148 0.193453791474281 0.194127499787607 0.197848531419119 0.194780614576263 0.195558456825584 0.194793302862103 0.21043255025996 0.190012614195594 0.191313912806231 0.190441992649883 0.189973657622263 0.20030307814207 0.193798540408758 0.189875932717897 1 1|0 +|/ 7243877 7244684 7244264.9 7242909 7244893 + gene protein_coding_gene FALSE TRUE AT1G20830.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83236.1) -0.18682721810038 -1.48729644864096 0.173482681045283 1 1.79391515824997 9.91509217689327 -0.18682721810038 0.153361900113120
AT1G13910_at 4.85779629831638 5.22049470853558 4.80272816450591 5.03990608410367 5.73588821868754 4.97516982358757 5.47965116535886 5.36299103806434 5.16345638628628 4.98172501709925 5.00411222763613 5.44878522618217 5.24161895562975 4.95872817284771 4.70119439046611 5.06109991150434 4.65631972409898 4.41061320830282 5.50284106457779 0.224003417752897 0.218153444438168 0.230719720235485 0.2227865920105 0.229848498001126 0.230275419293475 0.229370573794730 0.228478193817041 0.235583445112082 0.223515227246422 0.218014408776404 0.218872377687363 0.218014408776404 0.230776263385887 0.224078018631537 0.224203361539985 0.224742331060279 0.240066656186243 0.224250891421478 1 1|0 +|/ 4756709 4757787 4757271.125 4755781 4757988 + gene protein_coding_gene FALSE TRUE AT1G13910.1 leucine-rich repeat family protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT5G61240.1); similar to leucine-rich repeat resistance protein-like protein [Gossypium hirsutum] (GB:AAK70805.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.186254371042610 -1.48626914092307 0.173748076746157 1 1.79266639425137 10.2599864208473 -0.186254371042610 0.152848082846284
AT2G25170_at 7.72148810943 7.86740526069799 7.51830542966496 7.24665902365814 8.04759406679766 7.60912461700377 7.67894846898646 7.58447149719678 7.78825811618047 7.66257620804382 7.5121722922818 7.70244553559541 7.46518020012193 7.44575736082894 7.75278500458946 7.55225458222982 7.37973580139095 7.75620766711188 7.77528036864072 0.206310723303159 0.190164122756010 0.197394149200347 0.198840553490703 0.188751545304864 0.191441831254396 0.198605740259135 0.195634652323862 0.211998497173895 0.184505083021188 0.190302802208442 0.199601482516753 0.186997519377132 0.210628208528488 0.204178330453081 0.195373806718628 0.209972317666821 0.197784749423656 0.187927584818858 2 2|0 +|/ 10730123 10730719 10730452.7 10721485 10731065 + gene protein_coding_gene FALSE TRUE AT2G25170.1 PKL/SSL2 (PICKLE, SUPPRESSOR OF SLR2) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. Identical to CHD3-type chromatin remodeling factor PICKLE (EC 3.6.1.-) (Protein GYMNOS) (PKL) [Arabidopsis Thaliana] (GB:Q9S775); similar to chromatin remodeling factor, putative [Arabidopsis thaliana] (TAIR:AT4G31900.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (japonica cultivar-group)] (GB:BAD72546.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa] (GB:AAL47211.1); similar to chromatin-remodeling factor CHD3 [Oryza sativa (indica cultivar-group)] (GB:AAL47203.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Protein of unknown function DUF1086; (InterPro:IPR009462); contains InterPro domain Protein of unknown function DUF1087; (InterPro:IPR009463); contains InterPro domain Chromo; (InterPro:IPR000953) -0.139439237616452 -1.48611851007094 0.173787021064990 1 1.79248333196026 15.3156773274164 -0.139439237616452 0.0941940432312248
AT3G51140_at 8.1268416955089 8.53333606927204 7.89716943021885 7.93894621944237 8.39440908795382 7.82068619002347 9.0187477136524 8.99209046138266 8.25848475429747 8.23255611877249 8.42675041347081 8.73526964640518 8.11312508920413 8.50135380881293 8.93955184901163 8.60823733376432 8.24650309227899 8.4293962446095 8.00696886960916 0.199031036821779 0.188598308142277 0.209810492710998 0.202627790758093 0.191321573796446 0.209914598644909 0.197302545090198 0.187381058298296 0.212170643178755 0.190527107369692 0.189252263643253 0.186096308192314 0.19452821748328 0.194750113173953 0.193428832151177 0.186866238245771 0.215133000255639 0.187898097178254 0.198061598136635 3 3 + 19009738 19010378 19010089.818 19008579 19010883 + gene protein_coding_gene FALSE TRUE AT3G51140.1 similar to CDF1 (CELL GROWTH DEFECT FACTOR 1), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G23040.2); similar to Expressed protein, putative [Medicago truncatula] (GB:ABE85109.1); similar to Os03g0255200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049592.1); contains InterPro domain Helix-hairpin-helix motif, class 2; (InterPro:IPR008918) -0.160465532954694 -1.48576269938526 0.173879043554317 1 1.79205095441377 16.673291699559 -0.160465532954694 0.121982247794435
AT3G04650_at 5.20436018478591 5.58552736978753 5.34977785233597 5.51952260767848 5.64188383552826 4.81096990877207 6.11666788413164 5.88735892455186 4.45335234862237 4.62350029535672 4.59774691411508 4.79021671100395 4.88785630361322 4.32594768131509 4.427850446521 4.58917111259534 4.15054170608803 3.82810995767477 4.35232101892137 0.228507588312346 0.229547428151290 0.227297528918746 0.222923360320352 0.225891779672885 0.235166161875376 0.226679723581161 0.219917779302407 0.238784177979894 0.218846906750304 0.224633986881952 0.21971390006001 0.22057030766408 0.223150200189839 0.218846906750304 0.220374366233965 0.240775927741823 0.219435527570183 0.218846906750304 3 3 + 1263505 1264261 1263832.091 1261990 1264628 + gene protein_coding_gene FALSE TRUE AT3G04650.1 oxidoreductase similar to amine oxidase-related [Arabidopsis thaliana] (TAIR:AT1G56000.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG22072.1); similar to Os12g0597400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067194.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) -0.197325578293274 -1.48494635253280 0.174090336418628 1 1.79105915387451 9.97754423348778 -0.197325578293274 0.165726588037949
AT4G30900_at 7.2584571096526 7.05256857949448 6.85709253394702 6.41290520864683 7.612255107302 6.59605282592263 6.54852609209436 6.35624378942663 7.0864913076413 6.2678264702496 6.20143833767603 6.10176815407705 5.77042119381549 6.54571247346237 5.84903107523599 5.78239833467444 5.94464608792336 6.09837858643914 6.31119699832966 0.240880736711958 0.233101514770012 0.234323278781649 0.24372888025346 0.232170073157599 0.228975087836407 0.237136779128798 0.233203473448439 0.232825395354277 0.232919453827307 0.225272040421098 0.233089282772922 0.235565740398728 0.234832646762999 0.242160236185455 0.227900059789683 0.259756917621806 0.235358420750823 0.225272040421098 4 4 + 15041780 15042137 15042004.2 15039438 15042317 + gene protein_coding_gene FALSE TRUE AT4G30900.1 similar to hypothetical protein MtrDRAFT_AC152068g2v2 [Medicago truncatula] (GB:ABE88728.1); similar to Os05g0279600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055085.1); contains domain no description (G3D.3.60.10.10); contains domain DNase I-like (SSF56219) -0.226409892686465 -1.48478420246931 0.174132332319111 1 1.79086218945868 13.1327105920541 -0.226409892686465 0.198019611265670
AT4G24330_at 9.16822092963504 9.41416413432314 9.2982739619843 9.28603293368747 8.97387223838376 8.70882373518702 9.05785946338907 9.22937468617436 9.00690759753888 8.85274560864054 8.87640134104106 9.18011102269016 8.61587472181746 9.05228275655388 8.76941944177628 8.80901884537582 8.51634861864317 8.57772622776963 8.82493359338578 0.116485048476945 0.115046935769979 0.117069820092966 0.11700987344487 0.118257532054976 0.124455460138062 0.116528809512503 0.114051891897807 0.117353973140554 0.11785207826063 0.121614615672559 0.115460382499490 0.120666403499389 0.114096911846540 0.121851316440211 0.116595483230175 0.131645484535527 0.114240677617286 0.121708206659970 4 4|0 -|/ 12603944 12605329 12604514.8 12603531 12606338 - gene protein_coding_gene FALSE TRUE AT4G24330.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49945.1); similar to Os05g0432400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055631.1); similar to hypothetical protein LOC447812 [Danio rerio] (GB:NP_001004551.1); contains InterPro domain Protein of unknown function DUF1682; (InterPro:IPR012879) -0.12293424031653 -1.48376681610265 0.174396033929942 1 1.78962663675305 17.9893328295856 -0.12293424031653 0.0692880453384344
AT1G79230_at 9.44017291651668 9.50091001096627 9.39503416155687 9.50071206043953 9.48280961842159 9.26874101310954 9.76821254328976 9.81445497702339 9.25028392287034 9.4330908165027 9.34398058348873 9.42786665020418 9.35701981944715 9.21009724356952 9.40517301699454 9.35326705309632 8.82643549615019 9.4192304368916 9.19588676126731 0.109848900684749 0.106809547284576 0.119338288081871 0.110204426566378 0.108068068181772 0.114423291756214 0.108344644469369 0.106134722555779 0.116937547020856 0.109173949320639 0.106808810293080 0.104650135602646 0.106484809036309 0.118990651852594 0.109080182134999 0.104650135602646 0.141624560996456 0.114983577285520 0.105168328664561 1 1|0 +|/ 29807271 29808519 29808003.143 29805586 29808832 + gene protein_coding_gene FALSE TRUE AT1G79230.1|AT1G79230.2|AT1G79230.3 ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1); thiosulfate sulfurtransferase|ST1 (MERCAPTOPYRUVATE SULFURTRANSFERASE 1) encodes a sulfurtransferase/rhodaneses, which belongs to a group of enzymes widely distributed in all three phyla that catalyze the transfer of sulfur from a donor to a thiophilic acceptor substrate. The protein and transcript levels are NOT affected by senescence or exogenous cyanide, suggesting that sulfurtransferases are involved in cyanide detoxification. similar to ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2), thiosulfate sulfurtransferase [Arabidopsis thaliana] (TAIR:AT1G16460.2); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307)|similar to ATRDH2 (ARABIDOPSIS THALIANA RHODANESE HOMOLOGUE 2), thiosulfate sulfurtransferase [Arabidopsis thaliana] (TAIR:AT1G16460.3); similar to thiosulfate sulfurtransferase [Datisca glomerata] (GB:AAD19957.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763); contains InterPro domain Thiosulfate sulfurtransferase; (InterPro:IPR001307) -0.109658388983488 -1.48210959680836 0.174826333498191 1 1.78761504910212 18.8143663898456 -0.109658388983488 0.0433744671329327
AT3G07760_at 7.88736344119493 7.8676882310644 7.67343322582536 7.5809239740317 6.81430803998437 7.36076577670942 5.91345825553214 6.93958583208205 6.78275227620439 6.4505788265293 5.72329751243393 6.0681886794247 5.61789744153336 6.03775124257271 5.78806875650101 6.52859661751883 5.57885255856938 5.4521203888109 6.30419413796779 0.205608729935716 0.206876044608406 0.204296645683575 0.200244505372478 0.199851165633088 0.205314958961024 0.20822353896757 0.212995479353445 0.210903162676486 0.203856071450712 0.204846619354921 0.201896074870042 0.199851165633088 0.202128772208073 0.204524709624446 0.199880257379994 0.215079117284300 0.217702416169459 0.204622650688925 3 3 + 2476759 2477919 2477665.364 2476373 2478260 + gene protein_coding_gene FALSE TRUE AT3G07760.1|AT3G07760.2 similar to Os12g0514600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066883.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993); contains InterPro domain Sterile alpha motif homology 2; (InterPro:IPR011510) -0.228913974863609 -1.47818914689444 0.175848023453855 1 1.78286123580283 13.4356183786719 -0.228913974863609 0.201851699989587
AT1G70290_at 10.1727841069616 10.4900608871664 9.92650451181603 10.1838323783054 10.8353857221418 10.4822496950754 10.389754671975 10.1621162658088 10.4674951629025 10.3983007362777 10.2726019698560 10.0829040960441 10.2274533681321 10.2913028894242 9.46526539630884 10.5440302232116 10.3146584100505 9.86835302015009 10.5566618324966 0.0826923955757462 0.082162746785024 0.0855699396436625 0.084209675755551 0.0868843676225395 0.0855529783926929 0.0861122481525942 0.0876933346568504 0.0968599284851164 0.0828700319535883 0.0856674477085399 0.0830130335976464 0.0854953974365565 0.0879450344272199 0.088199450906821 0.082162746785024 0.0917346712563601 0.0866224690474508 0.0846080778202961 1 1 - 26474966 26475645 26475237.818 26474743 26478449 - gene protein_coding_gene FALSE TRUE AT1G70290.1 ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8); transferase, transferring glycosyl groups Encodes an enzyme putatively involved in trehalose biosynthesis. Though the protein has both trehalose-6-phosphate synthase (TPS)-like and trehalose-6-phosphate phosphatase (TPP)-like domains, neither activity has been detected in enzymatic assays nor has the protein been able to complement yeast TPS or TPP mutants. similar to ATTPS10 (Arabidopsis thaliana trehalose phosphatase/synthase 10), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G60140.1); similar to ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G23870.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65494.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) -0.143758655860834 -1.47679943804655 0.176211453446490 1 1.78117779689778 20.6340729043427 -0.143758655860834 0.101411580979378
AT2G43260_at 4.61470973864681 5.80416446954284 4.54923105635118 4.8731091916174 5.21998205380735 5.48631304160677 4.5189811695575 5.3094851089579 5.55086415611288 4.7106433958592 4.41503091753736 4.39672103222165 4.43052235584052 4.71306669116401 4.6546620478189 4.59424288268051 4.47361919941644 4.73416889515085 4.98861038109178 0.240391885542641 0.239030006483787 0.255695694719422 0.244116831273721 0.236167128667313 0.247682086189515 0.241521252703561 0.236167128667313 0.249921316294321 0.236584324774037 0.236167128667313 0.236167128667313 0.24264150443015 0.240326807226264 0.2446378071182 0.238782484804078 0.239033242051984 0.240533969153351 0.239125164288992 2 2 - 17990908 17991349 17991100.545 17990768 17992181 - gene protein_coding_gene FALSE TRUE AT2G43260.1 F-box family protein / S locus-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43445.1); similar to F-box domain containing protein [Brassica oleracea] (GB:ABD65166.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.280772338728216 -1.47618507232454 0.176372330783378 1 1.78043385892143 9.86443542730267 -0.280772338728216 0.257585822981365
AT1G51140_at 4.49691885029732 4.89179872814407 6.77402570625908 6.81270205768145 5.63473917408743 5.38738122594522 8.62277691218283 8.64527946210242 3.96054453471123 6.6199050427131 6.07341995534846 5.96880600867223 7.05691460208814 6.63891956604146 5.63726356499709 6.85043338551622 6.92355791548558 6.19712201615354 6.36241549178612 0.200156556652409 0.200156556652409 0.206384775405218 0.203239493845716 0.206332167299161 0.232654299157041 0.217733819831422 0.220483029450454 0.224984636120634 0.200156556652409 0.200156556652409 0.200337853120937 0.205795853267211 0.203520581834178 0.204536474321119 0.202084969613343 0.219642415901131 0.210563615971809 0.203802710234224 1 1 - 18947766 18948405 18948119.636 18947125 18949421 - gene protein_coding_gene FALSE TRUE AT1G51140.1 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G42280.1); similar to Os08g0506700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062190.1); similar to transcription factor RAU1 [Oryza sativa] (GB:AAL87667.1); similar to Os09g0487900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063529.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.129350744931326 1.47376535631102 0.177007217760292 1 1.77750549100038 12.4411659228498 0.129350744931326 0.0810070151849113
AT3G43720_at 9.2937779122 9.33267821348906 8.92091011584125 9.03185485535813 9.98346296253662 9.59095166956934 10.3545344075927 10.4609871758403 9.89195166973746 9.97048079716864 11.3100626253445 10.9499450043408 10.9853467651669 10.9137479828201 10.7925714868505 10.2626691542683 9.709144659861 10.4510267304707 9.97027539919604 0.0939725012051945 0.0902900605851664 0.0944858027316465 0.0948583562929607 0.0875491668123467 0.0969260493799024 0.0890935993793148 0.0882766220525731 0.104259409352089 0.0894438384007059 0.0875621660380015 0.0875491668123467 0.0882730670875041 0.0909623491184687 0.0886520267890975 0.0882951417726581 0.102382386858401 0.0913345889977538 0.0910137615527195 3 3|0 -|/ 15626591 15628050 15627661 15626373 15628136 - gene protein_coding_gene FALSE TRUE AT3G43720.1|AT3G43720.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein|lipid binding similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein [Arabidopsis thaliana] (TAIR:AT2G27130.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE89509.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.124439409659399 1.47326656382553 0.177138341825670 1 1.77690217945645 19.9291697923073 0.124439409659399 0.0732614764522602
AT4G38470_at 8.35567565287229 8.45504641900565 8.2251472680823 8.12463573092304 8.82727066408456 8.61488810098034 7.9994489230272 7.73913831977853 8.02197629142708 8.38484663914385 8.39680180093528 8.46786990639151 8.04539366731491 7.97444891682053 8.20681991423259 8.42011294741702 8.21271242992034 8.1776736095838 8.5277719245704 0.164065311104198 0.169936730863478 0.162570412828887 0.165941043493402 0.166844213412435 0.171071522573312 0.163531421108994 0.165224483101163 0.169770554633159 0.167449782221240 0.171909026455990 0.165237492687830 0.174401596672604 0.168588730960253 0.162817938262175 0.164219862787637 0.165747765776235 0.162462635685348 0.160384032029069 4 4 + 18002265 18003521 18002930.909 17999426 18003675 + gene protein_coding_gene FALSE TRUE AT4G38470.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35780.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06436.1); similar to Protein kinase; Amino acid-binding ACT [Medicago truncatula] (GB:ABE89440.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06437.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.118427821521598 1.47198429624158 0.177475821675415 1 1.77535174315527 16.5672867685730 0.118427821521598 0.0630748240702274
AT1G51390_at 5.51623380845277 6.6422435065712 5.51952779403514 6.2950933228524 5.88499244930714 5.93980295242066 5.27085579885872 5.36686272415255 4.00711725835315 4.1122605995448 4.60712054185155 4.47818058001944 4.2355072991872 4.48382270231936 4.72155327570207 4.56744990684629 4.46850984515444 4.52479866147438 4.48070113055148 0.293579435925808 0.291862473570831 0.291230992377779 0.291938711818562 0.286698778673728 0.288217077144948 0.278787596107555 0.284730006786220 0.289673330632445 0.284327667898471 0.278787596107555 0.278787596107555 0.282264737832865 0.285171329506783 0.280544633333229 0.278787596107555 0.297298362599187 0.295834986624717 0.278787596107555 1 1 + 19054535 19055389 19054894.125 19054012 19055762 + gene protein_coding_gene FALSE TRUE AT1G51390.1 NFU5 (NFU domain protein 5) Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU4 than to NFU1,2, and 3. Targeted to the mitochondrion. Identical to NifU-like protein 5, mitochondrial precursor (AtNfu5) (AtNfu-I) (NIFU5) [Arabidopsis Thaliana] (GB:Q9C8J2;GB:Q9SYE1); similar to NFU4 (NFU domain protein 4) [Arabidopsis thaliana] (TAIR:AT3G20970.1); similar to Os05g0155300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054690.1); similar to hypothetical protein UM04972.1 [Ustilago maydis 521] (GB:XP_761119.1); contains InterPro domain Nitrogen-fixing NifU, C-terminal; (InterPro:IPR001075) 0.260823346115612 1.47157632236025 0.177583315164676 1 1.77485860516503 10.1598986351076 0.260823346115612 0.237382889893651
AT1G80410_at 6.25100537521853 6.85884895942825 6.21707441577728 6.43308844569681 7.0316764748612 6.0627282553415 7.41514226502828 6.97062344106175 5.3175433937419 4.88839814137398 5.37200200783555 6.18552799246948 6.3736426989338 6.16316347277983 6.22394455886779 6.1616475360758 6.33323788634187 5.86601616846898 5.29326289562026 0.216666369555622 0.212937211466162 0.214293179441561 0.213756549487133 0.215865030327520 0.226754339215926 0.230687528236657 0.220995952321833 0.238991737366173 0.215257116370224 0.211399377555298 0.209236136506571 0.209236136506571 0.209236136506571 0.221803511225527 0.209236136506571 0.216652006460414 0.218194090476931 0.21214769021362 1 1 - 30234186 30234983 30234606 30232377 30239873 - gene protein_coding_gene FALSE TRUE AT1G80410.1 EMB2753 (EMBRYO DEFECTIVE 2753); binding similar to PREDICTED: similar to NMDA receptor regulated 1 isoform 5 [Bos taurus] (GB:XP_879817.1); similar to PREDICTED: NMDA receptor regulated 1 isoform 2 [Pan troglodytes] (GB:XP_001138279.1); similar to PREDICTED: similar to NMDA receptor regulated 1 isoform 2 [Bos taurus] (GB:XP_869943.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.240366600522293 1.47042385199053 0.177887279889999 1 1.77346597047367 12.2806730876185 0.240366600522293 0.215631494413168
AT3G13330_at 9.67756594506711 9.77697488972156 10.0093498395353 10.1044371653271 9.7938552112117 9.50101006338463 9.1587021078404 9.26432668176997 9.30718350555519 8.94187523891007 8.7776028761764 9.0121459533098 8.79411849729706 8.97762575628264 8.45795207626988 8.84150054619284 8.90165326002566 8.97414267566369 8.72915671917028 0.132313562524293 0.129259160378611 0.128774607068976 0.123672484736041 0.126451234849156 0.129312747659366 0.132342101172004 0.129877868216676 0.133120916137541 0.128264517338638 0.132202242284029 0.128677068613450 0.131195805198890 0.144662856680514 0.14077937175339 0.130197975232965 0.127405299790703 0.126586418226059 0.126355249746568 3 3|0 -|/ 4320143 4321044 4320638.111 4319654 4330068 - gene protein_coding_gene FALSE TRUE AT3G13330.1 binding similar to proteasome activator subunit 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD53980.1); similar to Os06g0301300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057456.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.116062440519319 1.47039601469221 0.177894627666071 1 1.77343233967957 18.5781933344976 0.116062440519319 0.0588992683487056
AT4G11820_at 7.49516339120999 7.85792900533175 7.07674311104048 7.11137259889638 7.25703839624417 7.02624909846841 7.75635560478415 7.50892671320303 7.66280227829057 7.67469808905138 8.4926992718987 8.12555235756987 7.6755918786086 7.99302876876201 8.36195165759976 7.70045946865045 7.28701202519444 7.85345289853846 7.65381430234179 0.187887137203289 0.186713675692523 0.181263769324304 0.186619516601759 0.181901313566363 0.191899351900857 0.185120359813607 0.182839956904311 0.189965008409210 0.186638804402050 0.197134126311167 0.185012559018610 0.179464154244325 0.197669720312227 0.188800952975696 0.183531007471164 0.197171768843836 0.200618741028201 0.188582557221082 4 0|4 /|- 7109165 7109898 7109547.5 7108909 7112474 - gene protein_coding_gene FALSE TRUE AT4G11820.1|AT4G11820.2 BAP1 (hydroxymethylglutaryl-CoA synthase); acetyl-CoA C-acetyltransferase/ hydroxymethylglutaryl-CoA synthase|BAP1 (hydroxymethylglutaryl-CoA synthase) Encodes a protein with hydroxymethylglutaryl-CoA synthase activity which was characterized by phenotypical complementation of the S. cerevisiae mutant. Identical to Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (HMGS) [Arabidopsis Thaliana] (GB:P54873;GB:Q8L721;GB:Q9S707); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32923.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAF69804.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32922.1); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, N-terminal; (InterPro:IPR013528); contains InterPro domain Hydroxymethylglutaryl-CoA synthase; (InterPro:IPR010122); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, active site; (InterPro:IPR000590); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase C terminal; (InterPro:IPR013746)|Identical to Hydroxymethylglutaryl-CoA synthase (EC 2.3.3.10) (HMG-CoA synthase) (3-hydroxy-3-methylglutaryl coenzyme A synthase) (HMGS) [Arabidopsis Thaliana] (GB:P54873;GB:Q8L721;GB:Q9S707); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32923.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAF69804.1); similar to HMG-CoA synthase [Brassica juncea] (GB:AAG32922.1); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, N-terminal; (InterPro:IPR013528); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase; (InterPro:IPR008260); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase, active site; (InterPro:IPR000590); contains InterPro domain Hydroxymethylglutaryl-CoA synthase; (InterPro:IPR010122); contains InterPro domain Hydroxymethylglutaryl-coenzyme A synthase C terminal; (InterPro:IPR013746) -0.132147946589164 -1.46785161741381 0.178567363610836 1 1.77035990747547 15.1862172886043 -0.132147946589164 0.086055831541075
AT1G12530_at 6.33208546097536 6.35634404375546 6.84703770300826 6.46375562564869 6.73801569368637 6.82986984291159 6.88883185467131 6.30817868078786 6.13307477253935 6.60726294639904 6.60865171016544 6.6914943737869 6.24147205820122 6.43709108064576 6.40390612349326 6.36684292161559 6.53409134407615 6.62779248670363 6.52439331480471 0.218669233917264 0.213762302456877 0.213762302456877 0.219610830273428 0.220458547249453 0.214095273850909 0.217398944172335 0.219768813477056 0.228743706544067 0.220489842902311 0.215008472777692 0.214936260606659 0.216845732855221 0.221407387659852 0.213762302456877 0.220466391348507 0.219640801612824 0.231292679092714 0.213762302456877 1 1 - 4269256 4270685 4269765.364 4268990 4270785 - gene protein_coding_gene FALSE TRUE AT1G12530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G56420.1); similar to Os03g0228500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049452.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM27468.1) 0.157825228677265 1.46468901120082 0.179406678350359 1 1.7665451294742 13.0507622499725 0.157825228677265 0.121519488014497
ATCG00740_at 10.0607917335934 10.9380718596832 10.1855530615138 10.2748106420653 10.3387529404731 10.0875764826658 10.7269283164382 10.6742157480089 11.8667276353552 12.0203759493219 12.2880258813017 12.6103797404013 11.4910766772363 11.8307100582375 11.9817046372224 12.2402884222216 11.5098229013573 11.6900802031786 11.9758180714895 0.210928847796073 0.204402430910349 0.215968890769206 0.211947890974540 0.212345596619128 0.213266231104743 0.210280314614587 0.21431619422395 0.205794067207407 0.211004653238178 0.21462292182934 0.218701935286541 0.206357318932421 0.208371867895857 0.214809480919770 0.216287358478748 0.209192261496821 0.222684094572389 0.209529173888854 C C - 77987 78465 78174 77901 78890 - gene protein_coding_gene FALSE TRUE ATCG00740.1 RNA polymerase alpha subunit Identical to DNA-directed RNA polymerase alpha chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) (rpoA) [Arabidopsis Thaliana] (GB:P56762); similar to DNA-directed RNA polymerase alpha chain (PEP) (Plastid-encoded RNA polymerase subunit alpha) (RNA polymerase subunit alpha) (GB:Q9XQN8); contains InterPro domain RNA polymerase, RpoA/D/Rpb3-type; (InterPro:IPR011263); contains InterPro domain RNA polymerase, RBP11-like; (InterPro:IPR009025); contains InterPro domain RNA polymerase, alpha subunit, C-terminal; (InterPro:IPR011260); contains InterPro domain DNA-directed RNA polymerase, alpha subunit; (InterPro:IPR011773); contains InterPro domain RNA polymerase, dimerisation; (InterPro:IPR011261); contains InterPro domain RNA polymerase, insert; (InterPro:IPR011262) -0.188687393164546 -1.46415472921901 0.179548812496492 1 1.76590112763864 22.3656217399886 -0.188687393164546 0.158933120893993
AT3G56510_at 7.05428372686961 6.94038688480788 7.53146343533332 7.17127372314803 7.90857120355295 7.53361719501176 7.63851272106336 7.11006469762524 6.25505000719662 6.41637511344082 6.39967570421537 6.36838792642573 6.53880464959063 6.52259927470293 6.49757074885233 6.38362080346316 6.6854915801975 6.46124473888636 6.84026692414356 0.207425603604978 0.206704861466798 0.212406035852466 0.206365048194419 0.224955647093786 0.210694708863091 0.235939131348698 0.212406017582185 0.217703960783042 0.210828954347846 0.217172897150644 0.209746835039984 0.215322032192901 0.218833117957354 0.21721909919656 0.204397440348272 0.217728621298860 0.224743923435927 0.21606312687696 3 3|0 -|/ 20955798 20956818 20956302.571 20954907 20957640 - gene protein_coding_gene FALSE TRUE AT3G56510.1|AT3G56510.2 TBP-binding protein, putative|TATA-binding protein binding similar to Os07g0662600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060544.1); similar to hypothetical protein [Yarrowia lipolytica] (GB:XP_500481.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) 0.164348230850706 1.4640396731169 0.179579433654307 1 1.76576246096172 13.8540575867026 0.164348230850706 0.129797567007543
AT3G28450_at 8.093204142599 8.36200456942924 7.7750222192441 8.15889763011147 8.28471743989233 7.6291479653178 7.85531787106734 7.80765190422189 8.04178423909819 7.061848053883 7.20527768120199 6.98197683023028 6.97843180548454 7.20903424266896 6.95814668210018 7.23893630428722 6.9210763828481 7.2646790054413 7.01125122615268 0.200749990426986 0.206652963925617 0.209265328569748 0.21371736507297 0.209235805128170 0.214118112406635 0.204550485821611 0.201736813986816 0.205612082484801 0.202831462464193 0.198542088842875 0.195321172076050 0.195321172076050 0.208577310184915 0.214556096160408 0.195321172076050 0.220577005360731 0.200238291169650 0.200490028278817 3 3 + 10669829 10670371 10670090.909 10668499 10670614 + gene protein_coding_gene FALSE TRUE AT3G28450.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G27190.1); similar to Protein kinase [Medicago truncatula] (GB:ABE78632.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.172265640558203 -1.46259465119666 0.179964405126424 1 1.76402142912603 15.2289068209825 -0.172265640558203 0.139698893836240
AT1G48550_at 5.2948050280612 6.02640299218376 6.15096954951762 5.39414024703978 6.93482522394291 6.27546783963433 5.10489523444588 4.47898497799696 4.99355030853435 4.55110846049624 4.16524804972866 4.57922601350340 4.07164905514597 4.21818807190422 4.40947599651009 4.32944772398448 4.63643827927485 4.29531878045151 4.78400858616767 0.242675305033923 0.236267232942236 0.231056994994387 0.247948417800468 0.250170777628304 0.240182580253548 0.235922909426625 0.237142479138984 0.249334139740958 0.233434739458688 0.232784994783933 0.240933949201507 0.231934354210245 0.241787830612925 0.235737145974945 0.231056994994387 0.244001682642797 0.236038259851397 0.231056994994387 1 0|1 /|- 17954485 17955303 17954926.2 17954247 17956361 - gene protein_coding_gene FALSE TRUE AT1G48550.1 vacuolar protein sorting-associated protein 26 family protein / VPS26 family protein similar to vacuolar protein sorting-associated protein 26, putative / VPS26, putative [Arabidopsis thaliana] (TAIR:AT5G53530.1); similar to Vacuolar protein sorting-associated protein 26 [Medicago truncatula] (GB:ABE90390.1); contains InterPro domain Vacuolar protein sorting-associated protein 26; (InterPro:IPR005377) 0.262240100720927 1.46210952144364 0.180093812429071 1 1.76343713845332 10.2647346106256 0.262240100720927 0.240697947876690
AT1G77090_at 9.81316852657934 10.0103188429851 10.0907200165683 9.99668760814695 10.1706502438776 9.85513021578235 10.9024877757830 11.081587199033 10.7733361425897 10.7001007098476 11.0195010506799 10.9563285378284 10.7685333510034 11.0546579777166 10.8005944768759 10.9669650473653 10.5666343030337 10.8301674826353 10.607706038563 0.0868992773904445 0.0831267879946993 0.0855462138031288 0.0837991735778596 0.0840217829771102 0.0846994270804664 0.0863291782101367 0.0837172076677075 0.087544622341716 0.0826511449732368 0.0826511449732368 0.0826511449732368 0.0826511449732368 0.0826511449732368 0.0870953926998144 0.0826511449732368 0.0934689913966386 0.0826511449732368 0.083467861688354 1 1|0 -|/ 28965471 28966527 28965909.9 28965290 28966816 - gene protein_coding_gene FALSE TRUE AT1G77090.1 thylakoid lumenal 29.8 kDa protein Identical to Thylakoid lumenal 29.8 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O49292); similar to thylakoid lumenal 20 kDa protein [Arabidopsis thaliana] (TAIR:AT3G56650.1); similar to Os12g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066340.1); similar to thylakoid lumenal 29.8 kDa protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96032.2); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.123442541804554 -1.46128833992142 0.180313047485685 1 1.76244835557176 21.0221623412907 -0.123442541804554 0.073286113027095
AT1G15270_at 8.6629704828768 8.9273459700729 8.87845094939795 9.08250653592808 8.79063566657917 8.8354477300731 8.94966414575069 9.21053154833499 8.73140812227076 8.90319033538001 9.25977583448586 9.14232657227186 8.91678862430845 9.34575590705948 8.89348004119606 9.17952621997924 8.85877902346733 8.73735689421361 8.62576686471866 0.109330451786565 0.105594961535674 0.103477677613728 0.103365864694593 0.100693158995949 0.109970403027322 0.106845403634526 0.104816880711094 0.114268124860200 0.102714923126082 0.108884586910712 0.105959503354537 0.106400654470303 0.108614208797998 0.104239543871130 0.100693158995949 0.103480319085156 0.107225415303988 0.104118606305989 1 1|0 -|/ 5250845 5251866 5251185.375 5250653 5252097 - gene protein_coding_gene FALSE TRUE AT1G15270.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16040.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77733.1) 0.123700357950993 1.46105429447065 0.180375574802563 1 1.76216659927367 17.8147835021663 0.123700357950993 0.0737450481915446
AT4G15840_at 6.69571854908611 6.98260038026648 6.86605291452595 6.78335800217491 7.0767031443465 6.86792688797975 6.20731364384548 6.4278677417698 6.69617879742168 6.70498943761137 6.46897026412613 6.4847710031194 6.73873245933714 6.4423408106171 6.39312394922934 6.68516228591425 6.82800681476814 6.76485524418376 6.61995467944907 0.209353448690551 0.20511098175456 0.207490425856253 0.213505655275827 0.214866105122588 0.210754213252686 0.213638155579175 0.220962136381544 0.213789190464759 0.205125914663754 0.198624040933342 0.210646965945339 0.207984095210798 0.214752037223599 0.209706083232705 0.197759385863503 0.245891861604989 0.226514002223056 0.207691940296547 4 4|0 +|/ 8999871 9000831 9000426.375 8996925 9001051 + gene protein_coding_gene FALSE TRUE AT4G15840.1 similar to Os01g0932600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045299.1); contains InterPro domain TRAF-like; (InterPro:IPR008974) 0.123586437133007 1.46003084804102 0.180649221794895 1 1.76093481923839 13.3756691540357 0.123586437133007 0.0737000111767959
AT2G35040_at 7.2805591581939 7.58962926819835 7.32391515985752 7.4270283876857 7.54554913139616 7.5865839556463 8.11632852139996 8.26365636204594 6.9356792902185 7.34248286578485 7.76305462138912 7.7779892209791 7.4897418104021 7.50627596576111 8.08583445674115 7.46361409114573 7.80775336505627 7.44562270324789 6.99726793052699 0.195085278278433 0.189433997480418 0.194614113642993 0.193169577665299 0.188287106175522 0.187912491154629 0.191617492033311 0.189251820415955 0.18931890834977 0.189900704058812 0.195279618754414 0.185723654060922 0.186001564899689 0.191012560125113 0.189793216992629 0.188763289854341 0.194729815520268 0.189384534515483 0.197696802653163 2 2|0 -|/ 14772428 14773154 14772813.9 14772239 14775367 - gene protein_coding_gene FALSE TRUE AT2G35040.1 AICARFT/IMPCHase bienzyme family protein similar to phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Nicotiana tabacum] (GB:AAG40879.1); similar to putative aminoimidazolecarboximide ribonucleotide transformylase [Oryza sativa (japonica cultivar-group)] (GB:BAD11555.1); similar to aminoimidazolecarboximide ribonucleotide transformylase/inosine monophosphate cyclohydrolase [Vigna unguiculata] (GB:AAO40252.1); contains InterPro domain MGS-like; (InterPro:IPR011607); contains InterPro domain AICARFT/IMPCHase bienzyme; (InterPro:IPR002695) 0.116950790841873 1.45893790994463 0.180941852573730 1 1.75961993951208 15.0213041471449 0.116950790841873 0.0622867033476079
AT2G01710_at 5.83666020366719 6.33477255489644 6.15553694068466 6.29061676261614 7.21619473316784 6.55153159431653 6.70082225766852 6.50753157281313 5.54475897791508 5.64798378785167 5.931405013211 5.83322282162513 5.97041235622648 5.57013533915887 5.83933302063298 5.94815936124743 6.072493621357 5.82136531135671 5.97339272423863 0.227741824011455 0.225506520317469 0.230914920974532 0.230316458306579 0.234341593450882 0.240185913507197 0.235793215783365 0.235506650797419 0.235146484619653 0.235117360202566 0.224899717724233 0.231682943410849 0.233983231758303 0.231223091586346 0.224899717724233 0.228574137423034 0.234091666140534 0.224899717724233 0.229383287546491 2 2 + 316176 316647 316387 315725 316992 + gene protein_coding_gene FALSE TRUE AT2G01710.1 DNAJ heat shock N-terminal domain-containing protein similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G64360.4); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE93084.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.179897026350898 1.45864227772023 0.181021078799816 1 1.75926436913154 12.2468888369473 0.179897026350898 0.149419534609548
AT1G25450_at 4.63973971293917 5.03315890894583 3.29711404754741 3.3626149642232 4.76586402804301 4.53373730745195 3.61944956838272 4.13755550134083 5.74050012384026 4.4578918037225 6.9069581771222 6.72666408084905 5.5400443281878 6.31015365559929 6.24550466074944 4.81224435609652 3.93810299262335 5.22383318629564 4.90187840132791 0.252469412853883 0.250079825355811 0.264297780708642 0.266645108824148 0.246078128492195 0.253700714139 0.260185263598449 0.249326800583783 0.271365000259095 0.250703141321592 0.250766787543543 0.246155931356411 0.249470626601715 0.259448270693619 0.254322169051884 0.247617651947966 0.254614369183253 0.246818613925697 0.246078128492195 1 1 - 8938686 8939366 8938946.727 8938466 8940374 - gene protein_coding_gene FALSE TRUE AT1G25450.1 very-long-chain fatty acid condensing enzyme, putative Identical to 3-ketoacyl-CoA synthase 5 (EC 2.3.1.-) (KCS-5) (Very-long-chain fatty acid condensing enzyme 5) (VLCFA condensing enzyme 5) (KCS5) [Arabidopsis Thaliana] (GB:Q9C6L5;GB:Q84W57;GB:Q8L8L0); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT2G16280.1); similar to CUT1 (CUTICULAR 1), acyltransferase [Arabidopsis thaliana] (TAIR:AT1G68530.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to 3-ketoacyl-CoA synthase [Gossypium hirsutum] (GB:ABA01490.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93245.1); similar to FAE1 [Marchantia polymorpha] (GB:AAP74371.1); contains InterPro domain Chalcone and stilbene synthases, N-terminal; (InterPro:IPR001099); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.155935700320551 1.45766886809712 0.181282157670520 1 1.75809389263086 9.54683506618625 0.155935700320551 0.120068713720677
AT4G30760_at 8.88108801598144 8.78697549129008 8.76068386187786 8.61315085562903 9.42608545519715 9.17556423213452 8.91441680258306 8.75602541512219 8.88829322543438 8.49748347252092 8.84064035869755 8.96861455659127 8.85042176072754 8.70852258256313 8.89267763283985 8.75852333828177 8.80333230959612 8.61117595052004 8.81250603202187 0.113986579203271 0.107498734230339 0.115539871374028 0.113473543792417 0.117013140250765 0.117110552866425 0.114701432067345 0.114365236897894 0.123629301215652 0.112984526002983 0.108481513895831 0.106976475329028 0.110821212023630 0.113226726129634 0.115645965548072 0.115172082896657 0.112810137642401 0.119938827470643 0.111765900820691 4 4 + 14982576 14983267 14982994.909 14982528 14983427 + gene protein_coding_gene FALSE TRUE AT4G30760.1|AT4G30760.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62050.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96170.1); similar to Os03g0370200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050197.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.115361160600111 1.45712632884416 0.181427816165018 1 1.75744170794691 17.6827485018367 0.115361160600111 0.0595649703432816
AT4G10100_at 10.1280389328636 10.1879348461112 10.0670768462982 10.0881797415575 10.0148825135025 10.0903614744337 9.70097822481455 9.93482596876842 9.8670838137037 9.8009800745865 9.56676997055317 9.57529620922051 9.51351737612048 9.58402721873203 9.34220340053112 9.83085058804734 9.64101598610004 9.3603271043412 9.86646145449089 0.0987771943353933 0.0973511497396901 0.0967544745479546 0.0967700480540978 0.098320485994755 0.101313065137798 0.0964170441606095 0.0972130967744247 0.104927939755638 0.103872188087371 0.101197038959406 0.0973121657174388 0.102994063565342 0.097270641251979 0.107973817475083 0.097642701473782 0.0990206644439545 0.110129139482826 0.097249038086502 4 4 + 6309118 6309353 6309234.273 6308679 6309542 + gene protein_coding_gene FALSE TRUE AT4G10100.1|AT4G10100.2|AT4G10100.3 CNX7/SIR5; catalytic|CNX7/SIR5 molybdenum cofactor synthesis family protein, similar to Molybdenum cofactor synthesis protein 2 small subunit (Molybdopterin- synthase small subunit) (MOCS2A) (MOCO1-A) (Swiss-Prot:O96033) (Homo sapiens); contains TIGRFAM TIGR01682: molybdopterin converting factor, subunit 1; sir loss-of-function mutants are resistant to sirtinol, a modulator of auxin signaling. similar to VP15 [Zea mays] (GB:ABB96257.1); contains InterPro domain ThiamineS; (InterPro:IPR003749); contains InterPro domain Molybdopterin converting factor, subunit 1; (InterPro:IPR010034) -0.107955074206374 -1.45606750874536 0.181712379815361 1 1.75616929930949 19.7248311998601 -0.107955074206374 0.0439213601027651
AT3G53780_at 7.90689806825281 8.43772067241438 8.47024911874697 8.33192984667466 8.16125014821251 7.73986034243608 7.09418379132041 7.77784590966107 7.34469791713481 6.79941393742039 6.83416097324773 7.17405949357038 7.06530952019513 6.94653990482525 6.53582155160355 7.23748098335294 7.08611995204782 7.22713727399755 6.83653244371122 0.173264041583007 0.158904243988393 0.164759189242952 0.162281753060897 0.166335442364089 0.158904243988393 0.171100941439745 0.161276593097947 0.163748091697453 0.167524922793926 0.166413490882728 0.158904243988393 0.172925167679036 0.173937853687320 0.169046073931530 0.158904243988393 0.169063257735073 0.163400935777994 0.17255791887922 3 3|0 -|/ 19935708 19936651 19936188.667 19935546 19938004 - gene protein_coding_gene FALSE TRUE AT3G53780.1|AT3G53780.2 rhomboid family protein similar to ATRBL1 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 1) [Arabidopsis thaliana] (TAIR:AT2G29050.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os11g0704800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068547.1); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) 0.195720430394145 1.45604945916641 0.181717234137137 1 1.75614761325002 14.9934306402284 0.195720430394145 0.168305613670326
AT3G13930_at 9.42503460376425 9.50578478709639 9.4454803806725 9.47699597872112 9.60195863698854 9.28104257243872 9.90307131160241 9.72346933899908 9.10414570578784 9.4742581511333 9.63505192046722 10.0386109794086 9.69078451941828 9.67848734345187 9.7536178272914 9.80094153238364 9.56059052228766 9.64115933961722 9.32279720011724 0.105422903545528 0.101881400930332 0.106185312623421 0.106064929428555 0.103164461620969 0.109564996295994 0.105455580132497 0.106325783307887 0.117121736416545 0.106919644488262 0.104051529501626 0.101881400930332 0.105458493618681 0.106176050576238 0.104702709066899 0.101881400930332 0.115013943134681 0.109089508434233 0.105824707221885 3 0|3 /|+ 4599232 4600124 4599794.8 4595883 4600476 + gene protein_coding_gene FALSE TRUE AT3G13930.1 dihydrolipoamide S-acetyltransferase, putative Identical to Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 2) (PDCE2) (E2) (Dihydrolipoamide S- acetyltransferase component 2 of pyruvate dehydrogenase complex) (PDC- E2) [Arabidopsis Thaliana] (GB:Q8RWN9;GB:Q9ASS8;GB:Q9LVK7); similar to dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G54220.2); similar to dihydrolipoamide S-acetyltransferase [Zea mays] (GB:AAD46491.1); similar to Os06g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056555.1); similar to Dihydrolipoamide succinyltransferase [Medicago truncatula] (GB:ABE80470.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide acetyltransferase, long form; (InterPro:IPR006257); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.118267263767146 1.45419371157229 0.182216934578087 1 1.75391879761112 19.0580076264788 0.118267263767146 0.0653857715371944
AT4G29735_at 9.3982977906359 9.5184134365247 9.16892618334385 9.4038543150194 9.44265661978314 9.157835626824 8.6179057986998 8.8047102802991 8.9545194931317 8.90779630365836 9.31295007863025 9.10850263176237 8.93337917695791 8.97928243316565 9.20619626590334 8.85635334600921 8.51036267391427 8.79727140483615 8.9106388889816 0.127669608298432 0.123450400520151 0.133624515315203 0.121475287616492 0.122877477824813 0.123328509599796 0.121635846562183 0.124916042498355 0.137044978744050 0.121472709260071 0.123361321584929 0.124141242349273 0.125531308394672 0.133962903080935 0.127235548559210 0.121378430636801 0.135176156370714 0.123783476309022 0.122036631208487 4 4|0 -|/ 14562971 14564143 14563593 14562645 14564384 - gene protein_coding_gene FALSE TRUE AT4G29735.1 similar to hypothetical protein [Gossypium hirsutum] (GB:CAE75665.1); similar to Os06g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057897.1); contains InterPro domain Protein of unknown function UPF0197; (InterPro:IPR007915) 0.123602691254783 1.4540613518772 0.182252621397802 1 1.75375989068821 18.1327527463852 0.123602691254783 0.0745618440855518
AT4G00030_at 5.82036448468395 5.9448051161988 5.74250651637044 5.9586204466474 6.22802192886346 5.86425834333633 6.11741225425974 6.30050743417628 6.11739918259454 6.00907808820977 6.54799421790728 6.36634176811308 6.03205647446627 6.77900708966364 6.22227827109433 6.62020162075946 6.23430479180342 6.03342369030462 5.87306929417358 0.224677578218706 0.202660686965097 0.206808559307132 0.196493000421753 0.197292714958979 0.203944195674397 0.201938989523629 0.211784866011944 0.212794370803661 0.204094336442031 0.202433485361191 0.198493106471225 0.200903189428397 0.200164887767846 0.205134863753184 0.199799861015572 0.220610929288142 0.204761501397373 0.214983626816079 4 4 + 13617 14328 13887.727 13527 14413 + gene protein_coding_gene FALSE TRUE AT4G00030.1 plastid-lipid associated protein PAP / fibrillin family protein similar to PAP fibrillin [Medicago truncatula] (GB:ABE86074.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) 0.128590810998049 1.45315668493223 0.182496702152285 1 1.75267399543784 12.1742119883204 0.128590810998049 0.0826394444320982
AT4G34040_at 6.98364528846497 6.99179827573319 7.08629622208119 7.28535363401266 7.53719622893 7.43808702005041 7.4716129183403 7.46058084721445 6.859020385055 6.61319016913607 6.49962834004499 6.66707979934323 6.98032404462079 6.80830897158183 6.76306636212893 7.02286432438198 6.72667935489356 6.94110633764194 6.62678783378324 0.166938396125829 0.171232946557592 0.176824576520434 0.172386525172351 0.169577472491315 0.175470738605981 0.168089733397557 0.172799279899919 0.171598624977341 0.170902129325481 0.175641764784835 0.173535010233086 0.166114870259120 0.171910877866161 0.173567451054096 0.165261336017961 0.173715573892696 0.169784973966899 0.167755909501457 4 4|0 -|/ 16304675 16306080 16305288.9 16304285 16308684 - gene protein_coding_gene FALSE TRUE AT4G34040.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G15530.2); similar to Zinc finger, C3HC4 type (RING finger), putative [Medicago truncatula] (GB:ABE89604.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.105645003167611 1.45304260816347 0.182527500647463 1 1.7525370933513 14.0322204649306 0.105645003167611 0.0385545697791895
AT2G22240_at 8.30609163361944 8.75067561347066 8.14075215548493 8.5052499228648 9.10666729483465 9.36826777327955 10.0254619116875 10.0614050399146 8.08656372104105 9.24321471961278 9.04846444973566 8.95616907495044 9.14846280624953 8.99504572207972 8.20528106093361 9.46455273377934 9.3886475829966 8.87786556239634 9.0687921089925 0.152212053294662 0.145912633676638 0.151289808952658 0.15017795467717 0.145912633676638 0.150820330873232 0.158448285001483 0.154926311399780 0.163312328462902 0.145912633676638 0.147002933081878 0.145912633676638 0.149618011152380 0.149808902119459 0.155582501721862 0.145912633676638 0.158849745621961 0.161178961100096 0.147656700920432 2 0|2 /|- 9459012 9459653 9459326.5 9458685 9461174 - gene protein_coding_gene FALSE TRUE AT2G22240.1|AT2G22240.2 inositol-3-phosphate synthase isozyme 2 / myo-inositol-1-phosphate synthase 2 / MI-1-P synthase 2 / IPS 2 Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis Thaliana] (GB:Q38862;GB:Q9SIE2); similar to MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase), inositol-3-phosphate synthase [Arabidopsis thaliana] (TAIR:AT4G39800.1); similar to inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative [Arabidopsis thaliana] (TAIR:AT5G10170.1); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q96348); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q9S7U0); similar to myo-inositol 1-phosphate synthase isozyme-2 (GB:AAC49172.1); contains InterPro domain Myo-inositol-1-phosphate synthase, GAPDH-like; (InterPro:IPR013021); contains InterPro domain Myo-inositol-1-phosphate synthase; (InterPro:IPR002587)|Identical to Inositol-3-phosphate synthase isozyme 2 (EC 5.5.1.4) (Myo-inositol-1- phosphate synthase 2) (MI-1-P synthase 2) (IPS 2) [Arabidopsis Thaliana] (GB:Q38862;GB:Q9SIE2); similar to MI-1-P SYNTHASE (Myo-inositol-1-phosphate synthase), inositol-3-phosphate synthase [Arabidopsis thaliana] (TAIR:AT4G39800.1); similar to inositol-3-phosphate synthase, putative / myo-inositol-1-phosphate synthase, putative / MI-1-P synthase, putative [Arabidopsis thaliana] (TAIR:AT5G10170.1); similar to Inositol-3-phosphate synthase (Myo-inositol-1-phosphate synthase) (MI-1-P synthase) (IPS) (GB:Q9S7U0); similar to myo-inositol-1-phosphate synthase (GB:AAA85390.1); similar to myo-inositol 1-phosphate synthase isozyme-2 (GB:AAC49172.1); contains InterPro domain Myo-inositol-1-phosphate synthase, GAPDH-like; (InterPro:IPR013021); contains InterPro domain Myo-inositol-1-phosphate synthase; (InterPro:IPR002587) -0.147318327732844 -1.45251775375874 0.182669259899320 1 1.75190730082638 17.9381137384890 -0.147318327732844 0.109482244423256
AT4G34720_at 11.0219785764650 11.123243683014 11.1376343518752 11.3077066869584 11.3752039952686 11.3712571385827 11.5217901365051 11.7422005298177 11.4512098116032 11.4391292498398 11.761198916653 11.6157255387472 11.7017562609443 11.6922506210198 11.6357857008121 11.5462022579925 11.5617393190603 11.7386664234519 11.2515931032794 0.0643493033550854 0.060679607792317 0.0632570668305517 0.0639346904968332 0.0606585760697805 0.0616687535453716 0.0633858610035665 0.0638611460900537 0.0761006487752184 0.0636226343949824 0.0635286899422503 0.061737054270554 0.0660321063374488 0.066069131575457 0.0623524301636109 0.0606585760697805 0.068183753720109 0.0612974744627666 0.0648647324503488 4 4|0 -|/ 16568229 16568681 16568419.1 16567829 16569300 - gene protein_coding_gene FALSE TRUE AT4G34720.1 AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1); ATPase/ hydrogen ion transporting ATPase, rotational mechanism vacuolar H+-pumping ATPase 16 kDa proteolipid (ava-p1) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AVAP4) [Arabidopsis Thaliana] (GB:P59229;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q944R9;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 2) (AVAP2) [Arabidopsis Thaliana] (GB:P59228;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) [Arabidopsis thaliana] (TAIR:AT2G16510.1); similar to ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3), ATPase [Arabidopsis thaliana] (TAIR:AT4G38920.1); similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (GB:Q43434); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, V0 complex, proteolipid subunit C, eukaryotic; (InterPro:IPR011555) 0.110834443324245 1.45156046664894 0.182928065032626 1 1.7507589488217 22.8437817296821 0.110834443324245 0.0512707963754556
AT4G13020_at 8.31072576176338 8.37167016572666 8.5933031496432 8.50994510618532 8.7901963232213 8.44026304683468 9.03429085099047 8.84111726035124 8.7843045290944 8.84234214622315 8.77693548849247 8.33324913802642 8.56285811532156 8.69121797441889 8.42319380620247 8.65552412532435 8.81851672019272 8.72905338460787 8.80529373629997 0.115515849300866 0.117341364299761 0.118290048642809 0.119969944855184 0.118942921798541 0.117331008186813 0.116626999092064 0.115955518406788 0.125154881384613 0.113808610396374 0.116040773743100 0.116920234832501 0.112905044387186 0.116558636675140 0.122507862935503 0.113909662433318 0.128233078574677 0.124301710509673 0.117331445979265 4 0|4 /|+ 7605916 7606700 7606328 7603108 7607152 + gene protein_coding_gene FALSE TRUE AT4G13020.1|AT4G13020.2|AT4G13020.3 MHK; kinase Encodes a member of the cdc2+ family of protein kinases MHK. Similar to the mak genes of rats. mak encodes a protein kinase that may play a role in spermatogenesis. Identical to Serine/threonine-protein kinase MHK (EC 2.7.11.22) (MHK) [Arabidopsis Thaliana] (GB:P43294;GB:Q9C5D4;GB:Q9SV67); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G19110.2); similar to protein kinase (GB:AAA18854.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.121426156517988 -1.45038740945769 0.183245643167216 1 1.74935234791067 17.3286716570625 -0.121426156517988 0.0714428923126515
AT1G64980_at 5.90802985513274 6.46358709035026 5.71466121402365 5.8628768799118 7.16072461305616 6.80553806525438 8.24777120876563 8.4427286366811 8.09136618200385 8.20851171273826 8.70915651212085 8.91246768379528 9.50418771533609 9.12556436059488 8.34636957995868 9.02745763035904 8.62094641654596 7.99602739443416 8.34082365800005 0.191685626858366 0.188619628210289 0.201465377925696 0.195588395575261 0.189721268951501 0.185133371538131 0.187185759451591 0.183311920541665 0.192822637821813 0.187825151197089 0.189184937082066 0.184020200933335 0.190515125789421 0.190510101583497 0.186702712872585 0.185740109275873 0.183161440071579 0.181488925982407 0.183279603852596 1 1 - 24141558 24142033 24141805.273 24141180 24142939 - gene protein_coding_gene FALSE TRUE AT1G64980.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90022.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448) -0.1564370136376 -1.45030234672971 0.183268690747183 1 1.74925037520849 15.3226593683422 -0.1564370136376 0.121727394462436
AT1G10580_at 7.74989975624627 7.69111351745304 7.32997598058706 7.35932794243079 7.58603312858385 7.53084315082508 7.40531483145536 7.12931856448282 6.60572798241095 6.13619070673705 6.29915310670967 6.55446824405922 6.47987136615429 5.5970941170917 6.56112785918763 6.19722530118447 6.39364780279241 6.03734187412078 6.58619820375384 0.201370635381143 0.212217132074557 0.20801799403117 0.200657828251723 0.215793651865862 0.206041804020447 0.204041492275148 0.212334639857789 0.211068045664377 0.206682857394293 0.204057689237648 0.202625158793922 0.212294689561232 0.219471305286937 0.21522730552439 0.20560986315375 0.220251949280683 0.209226204497231 0.206130013599048 1 1 - 3492117 3492352 3492233.375 3491282 3493738 - gene protein_coding_gene FALSE TRUE AT1G10580.1 transducin family protein / WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G54520.1); similar to hypothetical protein LOC514003 [Bos taurus] (GB:NP_001069111.1); similar to Os03g0397500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050302.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.110040519428720 -1.44869238150050 0.183705387770555 1 1.74732100022550 13.8265767789479 -0.110040519428720 0.0500176576757671
AT1G58250_at 5.69082888322777 6.45394427369575 5.92712650568558 5.92416416928147 6.63202744874164 5.8228776944575 6.67394313489242 6.18889612260288 6.49980863780638 6.41029775603169 6.35697075635084 6.83499323154106 5.61355926848566 6.33271028009556 6.06918281598574 6.32435620884344 5.7847311230493 6.19853685814717 6.52112290078285 0.231828231725158 0.225643241569541 0.222848019597984 0.221102510092601 0.217276429131464 0.223051517644811 0.218406448820394 0.227899255505425 0.252991853546099 0.229167107099664 0.216942695177331 0.216942695177331 0.223561248406903 0.217377103629761 0.232458345077021 0.218241469107438 0.232417250036873 0.220770565292977 0.225872426952779 1 1 - 21590997 21591807 21591314.727 21590707 21605286 - gene protein_coding_gene FALSE TRUE AT1G58250.1 SAB (SABRE) SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49680.2); similar to aberrant pollen transmission 1 [Zea mays] (GB:AAY85656.1); similar to SABRE, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98216.1); similar to aberrant pollen transmission 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95966.1); contains domain FAMILY NOT NAMED (PTHR15678); contains domain SUBFAMILY NOT NAMED (PTHR15678:SF10) -0.231525256395556 -1.44767867102690 0.183980821203747 1 1.74610680051289 12.4974542787495 -0.231525256395556 0.209985116916456
AT4G01330_at 6.80867674019563 6.91069084239159 5.9504576963395 5.9818668965827 7.36438618919678 6.58790815125625 7.51991846793624 7.34007577522411 7.81244697013935 7.4816498496295 8.55257021343627 8.5019934606238 8.47405882910394 8.50899722805301 7.89976739952663 8.25006529172873 7.28846028239148 7.61076437352532 8.1102177390268 0.198282776871691 0.212385522540758 0.205431675486921 0.215997748838350 0.20196546086791 0.198282776871691 0.206442696798449 0.207281586150902 0.212214688489601 0.198282776871691 0.198282776871691 0.202551283707205 0.203513287937407 0.202479620979269 0.204063687025248 0.201528295310076 0.209065057985687 0.207037947091252 0.201513796557163 4 4|0 +|/ 551837 552633 552266.3 550420 552941 + gene protein_coding_gene FALSE TRUE AT4G01330.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01540.2); similar to Protein kinase [Medicago truncatula] (GB:ABE93550.1); similar to Os03g0125600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048818.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.169644637279824 -1.44405962458037 0.184967103118770 1 1.74177594519552 14.7766340054223 -0.169644637279824 0.139161663641757
AT1G33560_at 7.78900767809099 7.8417407840772 8.13319341575465 8.1313575055042 7.86628723394198 7.5743212142168 6.93394216468244 7.16354919755455 6.17632101103685 6.58230641334278 6.06417969953962 5.47359342612027 5.8794861050886 6.2180067996285 5.51774432930446 5.31593866457298 5.34028333298274 5.75463116260126 6.51338840119554 0.242538992722943 0.250880537300155 0.256613126379194 0.256874423050195 0.251392229590940 0.253496146816800 0.245570558637989 0.242393383113116 0.264242114876954 0.242393383113116 0.242393383113116 0.247928764749886 0.247339148485194 0.246449370497578 0.254892733778362 0.246298269365715 0.273047873734251 0.248516699988178 0.242393383113116 1 1 + 12171275 12171830 12171528 12168748 12171985 + gene protein_coding_gene FALSE TRUE AT1G33560.1 ADR1 (ACTIVATED DISEASE RESISTANCE 1) Encodes a NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens. Identical to Disease resistance protein ADR1 (Activated disease resistance protein 1) (ADR1) [Arabidopsis Thaliana] (GB:Q9FW44); similar to ADR1-L2 (ADR1-LIKE 2), ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G04720.1); similar to ADR1-L1 (ADR1-LIKE 1), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT4G33300.2); similar to ADR1-L3 (ADR1-LIKE 3), ATP binding / protein binding [Arabidopsis thaliana] (TAIR:AT5G47280.1); similar to Probable disease resistance protein At4g33300 (GB:Q9SZA7); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.117146224479404 -1.44354140222516 0.185108710604594 1 1.74115630381749 13.7389190068136 -0.117146224479404 0.0649238038651872
AT4G34265_at 7.12485918635287 7.79757668471006 6.97343171785245 7.33861435076703 7.71905280780085 7.76878984634694 7.24197151313146 7.68137814106805 7.43802028189691 6.71007308345034 7.37121984729599 7.55515418649305 7.67972243293816 7.4940094186268 7.2751759376534 7.65778820590445 7.06530575882362 6.82287314218383 6.82732818587968 0.173881122500105 0.156258136285622 0.156407378989600 0.158018365610489 0.158509149862820 0.164604697936885 0.162826766242014 0.163681856698815 0.18759275992287 0.170484062614720 0.164502624267505 0.159554988912509 0.159920505610349 0.168859310465920 0.166720500653768 0.155751928950547 0.166224448173296 0.165750502772113 0.158034535677386 4 0|4 /|+ 16402628 16402703 16402662.125 16402284 16403827 + gene protein_coding_gene FALSE TRUE AT4G34265.1|AT4G34265.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15000.3)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G15000.5) 0.180937365936904 1.44295397528759 0.185269343568247 1 1.74045406801505 14.6341909309948 0.180937365936904 0.152980630710296
AT2G20000_at 6.74452988078762 6.47435322083366 6.02597398407754 6.20456406121781 7.01500017137313 6.57176960025256 6.90831705232978 6.99725029405135 5.97679000716769 5.97184510777842 6.31161400465299 6.40228915199438 6.479459340197 6.24368718214031 6.13727913287192 6.07290227247969 5.99884308174508 6.31411909408488 6.6267580446696 0.222842817872911 0.222384445718080 0.221362556321337 0.222905771052127 0.223583476930255 0.227203861067909 0.220710611602582 0.219354104790558 0.216139984386507 0.218371578312464 0.224197586896989 0.214368412147474 0.220782665140604 0.220881523271345 0.227912158902921 0.214734537271038 0.231128141151402 0.222612332345180 0.215330423815669 2 0|2 /|- 8639561 8640049 8639798.4 8639159 8644381 - gene protein_coding_gene FALSE TRUE AT2G20000.1 HBT (HOBBIT); binding Required for cell division and cell differentiation in meristems. Encodes a homolog of the CDC27 subunit of the anaphase-promoting complex (APC). Unlike other CDC27 homologs in Arabidopsis, its transcription is cell cycle regulated. Strong hbt mutants give rise to seedlings that lack an anatomically recognizable quiescent center and differentiated columella root cap cells, the cell types derived from the wild-type hypophysis. Furthermore, they have no mitotically active root meristem and lack a differentiated lateral root cap. similar to binding [Arabidopsis thaliana] (TAIR:AT3G16320.1); similar to putative HOBBIT [Oryza sativa (japonica cultivar-group)] (GB:BAD35375.1); similar to Os06g0622500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058099.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.136779610060733 -1.4426748036039 0.185345726387310 1 1.74012039134903 12.8361307218118 -0.136779610060733 0.0962364911353634
AT3G09770_at 7.84874334609867 8.10633762526065 8.25224621291206 8.32353632231118 8.6843843103191 8.56386750167589 8.29174976617534 8.5665201968808 7.66952436914802 8.28415083583768 8.06395958286448 7.84425976024285 8.35605557176823 8.08121443611277 7.40492013891157 8.49238718640077 8.33240647476317 7.98696355488292 8.29799231799072 0.169129712737824 0.167198468923918 0.156375951301687 0.160624023084109 0.164547198610518 0.167700865579407 0.164313531801629 0.167790402450114 0.191562504830791 0.165433034937929 0.156768751925659 0.163124578786386 0.160935472199728 0.172337542612146 0.165784035024977 0.156375951301687 0.178390876312963 0.175129385240136 0.159982653666957 3 3 - 2996490 2997064 2996820 2996274 2998195 - gene protein_coding_gene FALSE TRUE AT3G09770.1|AT3G09770.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03200.1); similar to Os10g0204100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064306.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95025.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841)|similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G03200.1); similar to Os10g0204100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064306.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95025.1); contains domain MAHOGUNIN (PTHR22996); contains domain RING/U-box (SSF57850); contains domain no description (G3D.3.30.40.10) 0.119526258559284 1.44090737036173 0.185829945921821 1 1.73800874592869 16.4067531664886 0.119526258559284 0.0695370125097761
AT1G14650_at 5.20269072352211 5.2715980263992 5.04945854226437 4.90183344174232 5.24428095234646 5.27683690960933 5.27506446733644 4.97363793359307 4.98578843736431 4.79735815691411 4.61769663681261 4.72893955530891 4.4568510816562 4.5694628627872 5.00380078584019 4.83872324011255 5.03950916051911 4.48567893815425 4.86602005055801 0.207243467401426 0.194091356942976 0.197762401617146 0.198070527188110 0.20386058368294 0.203339954563093 0.200218293136831 0.205212636114195 0.218317529431099 0.194091356942976 0.194091356942976 0.207331038344598 0.204246698514692 0.210204250447257 0.196794415623448 0.196551167031173 0.201617735138377 0.199048915535259 0.203140498632262 1 1 + 5029830 5030480 5030117.182 5027657 5030787 + gene protein_coding_gene FALSE TRUE AT1G14650.1 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / ubiquitin family protein Identical to Probable splicing factor 3 subunit 1 [Arabidopsis Thaliana] (GB:Q8RXF1;GB:Q9MA20); similar to SWAP (Suppressor-of-White-APricot)/surp domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G14640.1); similar to SWAP/Surp; Ubiquitin [Medicago truncatula] (GB:ABE94283.1); similar to Os02g0245000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046418.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.114059045926009 -1.44070003861913 0.185886820673754 1 1.73776113303278 9.9497442900655 -0.114059045926009 0.0595617932660831
AT3G12280_at 6.51964510871835 6.3957471474069 6.04305012249672 6.44491750410443 6.5573740330086 5.87742260343481 6.2574774244914 6.99593086785679 6.72831177489961 5.98008244249318 5.83369690797935 6.59428831394425 6.07059291499171 6.54167762758058 6.25304712870555 6.67288463260503 6.16256622455001 5.94308423489853 6.40063663557227 0.221269357320065 0.212937186736331 0.219086682296364 0.221200376805540 0.212937186736331 0.225249026999975 0.220733411732125 0.216744212202445 0.228323881208487 0.219349392333868 0.213116236328849 0.214750787614434 0.212937186736331 0.221543293674152 0.223618756046262 0.215554906693398 0.218224883771326 0.218712278346453 0.218094315375710 3 3|0 -|/ 3913718 3914609 3914121.2 3913419 3919140 - gene protein_coding_gene FALSE TRUE AT3G12280.1 RBR1 (RETINOBLASTOMA-RELATED 1) Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. RBR also regulates stem cell maintenance in Arabidopsis roots. similar to retinoblastoma-related protein 1 [Populus tremula x Populus tremuloides] (GB:AAF61377.1); similar to retinoblastoma-related protein [Pisum sativum] (GB:BAA88690.1); similar to retinoblastoma related protein [Camellia sinensis] (GB:BAE80326.1); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Retinoblastoma-associated protein, A-box; (InterPro:IPR002720); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Retinoblastoma-associated protein, B-box; (InterPro:IPR002719) -0.211103137094345 -1.44065779776632 0.185898409953751 1 1.73771068798145 12.7007739510124 -0.211103137094345 0.188343233164443
AT3G47990_at 7.70921539653247 7.71200486786735 7.83666800096345 7.76343873807104 8.04417770503132 7.66928900523532 7.80666156800483 7.71383765279147 7.51897122488749 7.76644555512838 7.4464046099525 7.42688987298606 7.54771274933731 7.38081680976391 6.8182989836603 7.71318553351878 7.39315562494352 7.37006058678346 7.86630644036934 0.158367010948194 0.170724573385025 0.160256837182396 0.163841447724415 0.165080708820534 0.160553224713448 0.162420277927029 0.157187896338692 0.177686738750576 0.155762307026909 0.166428428140649 0.161114457793633 0.155762307026909 0.175743172039132 0.163690580338069 0.156837476188569 0.170533818946466 0.169763683796566 0.157335232095594 3 3 - 17724414 17725304 17724705.9 17724129 17727293 - gene protein_coding_gene FALSE TRUE AT3G47990.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G32600.1); similar to Os05g0145000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054629.1); similar to hypothetical protein T17F15.140-like protein [Hordeum vulgare subsp. vulgare] (GB:AAL85697.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.118605993033627 -1.44019717773815 0.186024827615668 1 1.73716065943507 15.3340649517271 -0.118605993033627 0.0680279011671987
AT4G35580_at 6.72147383283894 6.64484619514743 6.35729700260718 6.84066510746102 7.38712444444397 6.5530536430272 5.95160538399837 5.46622906168245 6.03048417596356 5.77941083633969 5.85549885661877 5.78116050022749 5.81888463593366 5.81821497641132 5.49237188500813 5.99193817235853 5.65241006598904 5.98342727755457 6.09349938677962 0.197911707007854 0.190796315072899 0.189113608753124 0.187672788815647 0.210413844490585 0.201168491166884 0.193673028454670 0.187369715151194 0.207904238858138 0.192334336297757 0.206339609718201 0.192825924788216 0.190128137357188 0.196157031847778 0.191050321820762 0.189672553955221 0.193726667224176 0.194534907025641 0.194744504027908 4 4|0 -|/ 16888622 16889580 16889191.4 16888410 16890806 - gene protein_coding_gene FALSE TRUE AT4G35580.1 no apical meristem (NAM) family protein similar to ANAC014, transcription factor [Arabidopsis thaliana] (TAIR:AT1G33060.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.209968297101559 1.43948482889664 0.186220480773507 1 1.73631023906497 12.3738050485460 0.209968297101559 0.187249688128529
AT3G48730_at 9.50550036354107 9.5526768263059 8.8814988491933 8.86659276469204 9.55126043211167 9.12403419955603 9.61182372015803 9.14911502964627 8.93025353741657 9.38418946570857 9.83799805143738 10.3768277061998 9.56133052730953 9.75147778090812 10.4415367382022 9.93034792349704 9.42611646268846 9.36738941194552 9.27406181035899 0.116854649743175 0.114362338339917 0.117246248804520 0.113608583743082 0.119178498193553 0.118158998233545 0.122194164233560 0.117371699326937 0.137860750043905 0.122123416758213 0.115749413329661 0.113596508177796 0.119652650281392 0.112303699182927 0.121219038891228 0.114975931929820 0.120957810751595 0.129256425280906 0.116151793637765 3 3 + 18061846 18062485 18062228.636 18060608 18062687 + gene protein_coding_gene FALSE TRUE AT3G48730.1 GSA2 (GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE 2); glutamate-1-semialdehyde 2,1-aminomutase Identical to Glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplast precursor (EC 5.4.3.8) (GSA 2) (Glutamate-1-semialdehyde aminotransferase 2) (GSA-AT 2) (GSA2) [Arabidopsis Thaliana] (GB:Q42522;GB:Q9SMM6); similar to GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE), glutamate-1-semialdehyde 2,1-aminomutase [Arabidopsis thaliana] (TAIR:AT5G63570.1); similar to Glutamate-1-semialdehyde 2,1-aminomutase, chloroplast precursor (GSA) (Glutamate-1-semialdehyde aminotransferase) (GSA-AT) (GB:Q85WB7); similar to glutamate-1-semialdehyde aminotransferase (GB:AAA79123.1); similar to glutamate 1-semialdehyde aminotransferase [Brassica napus] (GB:AAO63783.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814); contains InterPro domain Glutamate-1-semialdehyde-2,1-aminomutase; (InterPro:IPR004639) 0.145763690293787 1.43835743590939 0.186530497873801 1 1.73496482207531 18.7967109463680 0.145763690293787 0.109321987803054
AT1G70520_at 9.5210911382901 9.52865619470662 9.40200590828018 9.32987896681376 9.67283257673378 9.49091771827388 8.89557484551614 8.96080801156273 9.1728384408181 8.48270162316694 8.89575598332732 9.10140899268391 8.84168420138462 8.99793338121372 8.41426689803886 8.8041845216109 8.7246294928724 8.59500728768024 8.8557105844525 0.0979256481123397 0.0941417912177085 0.100245493289261 0.0961114375989669 0.098246995708903 0.0977715943920066 0.0997238167427948 0.0963357895014716 0.102888276301402 0.109294530889031 0.097417839804047 0.0955952841964254 0.0948745418196432 0.0989839588590285 0.0978594665321476 0.0957496922262695 0.0982128628532062 0.100348265337061 0.101390615135946 1 1|0 -|/ 26588588 26589256 26588904.333 26588392 26591082 - gene protein_coding_gene FALSE TRUE AT1G70520.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G70530.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93633.2); similar to Os05g0130100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054549.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.103575770189409 1.43828128819413 0.186551453697442 1 1.73487397015714 18.1671918671875 0.103575770189409 0.0357213950105387
AT3G45770_at 8.54786887932249 8.33362181748002 8.47972666298189 8.39458670302263 8.7982944467974 8.55917364832821 8.36813041217761 8.03511125186998 8.09327504224082 7.80740037880256 7.86686459548039 7.91385750283718 7.6828484455086 7.9740826936356 7.85353747107346 8.0412708993339 7.80803899587025 7.75541040498272 7.63725923656895 0.142919323645555 0.139142766374846 0.147391468519611 0.142613002423859 0.146715162178183 0.143864774045669 0.140156367777597 0.139142766374846 0.151908018221189 0.149743551299512 0.141050306667015 0.141881453505345 0.149089819521504 0.146769301888236 0.144143212602963 0.140032120560749 0.149090187301358 0.14698895340035 0.144090244298565 3 3|0 -|/ 16816783 16817734 16817333.556 16816547 16818841 - gene protein_coding_gene FALSE TRUE AT3G45770.1|AT3G45770.2 oxidoreductase, zinc-binding dehydrogenase family protein Identical to Probable trans-2-enoyl-CoA reductase, mitochondrial precursor (EC 1.3.1.38) [Arabidopsis Thaliana] (GB:Q8LCU7;GB:Q8W4H6;GB:Q9M166); similar to ARP protein (REF) [Arabidopsis thaliana] (TAIR:AT1G49670.1); similar to Alcohol dehydrogenase superfamily, zinc-containing [Medicago truncatula] (GB:ABE81735.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) 0.126386465978079 1.43718346416094 0.186853803579107 1 1.73356446246444 16.2935477753947 0.126386465978079 0.0813966311071703
AT3G54860_at 6.42876575705792 7.0880603142542 5.98228679721816 6.30594060263864 7.56334421972912 6.98164158799637 6.5095881317939 6.62024234578876 5.89859756927591 6.39461607938242 6.6969804931551 6.98688440919126 6.65368616075813 6.6452765199681 6.44322553198935 6.33068779854662 5.90331466318795 6.34294043594938 6.21491474203588 0.258881309373445 0.241697607468835 0.248570996433933 0.256404025493966 0.246947665273981 0.259545133936812 0.246963573758634 0.247283662299079 0.277540447521779 0.242864567759618 0.262057375242551 0.241697607468835 0.241697607468835 0.251886330710183 0.248580639301407 0.248898512862028 0.287855745464136 0.256691821478644 0.243878210278075 3 0|3 /|- 20335454 20336277 20335859.625 20335068 20340895 - gene protein_coding_gene FALSE TRUE AT3G54860.1 ATVPS33 (Arabidopsis thaliana vacuolar protein sorting 33); protein transporter Homologous to yeast VPS33. Forms a complex with VCL1 and AtVPS11. Involved in vacuolar biogenesis. Identical to Vacuolar protein sorting-associated protein 33 homolog (AtVPS33) (VPS33) [Arabidopsis Thaliana] (GB:Q94KJ7;GB:Q9SV35); similar to VPS45 (VACUOLAR PROTEIN SORTING 45), protein transporter [Arabidopsis thaliana] (TAIR:AT1G77140.1); similar to OSJNBb0045P24.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE02908.1); similar to Os04g0223000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052270.1); similar to hypothetical protein DDBDRAFT_0189239 [Dictyostelium discoideum AX4] (GB:XP_635401.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.188818768016859 1.43671594488498 0.186982692436438 1 1.7330069702017 13.0198590354720 0.188818768016859 0.163263424394932
AT2G21060_at 5.67240618037053 5.94347486134468 5.70975168262734 5.28562638155546 5.22579062167088 5.25763789843734 5.11064270077094 4.86258030183271 5.70584081075078 5.46728793161898 5.74870323373527 5.95119039413673 5.8333487589842 5.67244054166493 5.90244151568619 5.96275069085132 6.23801382390267 5.77546141213592 5.57922303028455 0.191768492986529 0.182332306590081 0.190101840959583 0.183941055350470 0.183624724923486 0.185942458599897 0.186844198581500 0.182332306590081 0.191939368062117 0.193427696781504 0.184118171865246 0.182876175774226 0.192974764994854 0.184867685021329 0.182332306590081 0.182873743430498 0.197971949332080 0.188690344786904 0.189359134374482 2 2 - 9044066 9044565 9044322.636 9043874 9044731 - gene protein_coding_gene FALSE TRUE AT2G21060.1 ATGRP2B (GLYCINE-RICH PROTEIN 2B); nucleic acid binding glycine-rich protein (AtGRP2b) Identical to Glycine-rich protein 2b (AtGRP2b) (GRP2B) [Arabidopsis Thaliana] (GB:Q38896); similar to GRP2 (COLD SHOCK DOMAIN PROTEIN 2), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G38680.1); similar to Glycine-rich protein 2 (GB:P27484); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.136926086914378 1.43665205731272 0.187000311432789 1 1.73293079572123 11.1183193555455 0.136926086914378 0.097266836476609
AT1G11240_at 6.04717768860245 6.09121425847452 6.30253609776994 5.89226004495137 6.02908383021338 6.04297623265443 5.92031519426544 5.94712924388591 5.36963846928757 5.43861529351781 5.82686053976751 5.94351790858584 5.45686496630618 5.37993248815452 6.14361138263193 5.60057449947426 5.84306841244439 5.70180735285729 5.87670937470357 0.253077433698715 0.258416585145493 0.249761143542965 0.245611305803363 0.250577786690617 0.256169860975821 0.245151928717907 0.247122342657243 0.253847148433912 0.242783559719666 0.250515408401215 0.242783559719666 0.250642328964587 0.247484481244570 0.256081018926523 0.243018672623501 0.244858275413100 0.25762593260239 0.246566082754214 1 1|0 -|/ 3766938 3768170 3767488.889 3766754 3768294 - gene protein_coding_gene FALSE TRUE AT1G11240.1 similar to GTP binding / RNA binding [Arabidopsis thaliana] (TAIR:AT5G55660.1); similar to Os03g0353500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050128.1); similar to hypothetical protein SPAC29A4.09 [Schizosaccharomyces pombe 972h-] (GB:NP_594873.1); contains domain gb def: Hypothetical protein (PTHR14577:SF5); contains domain FAMILY NOT NAMED (PTHR14577) 0.120315134849142 1.43602785326197 0.187172531673549 1 1.73218664683843 11.6834286103259 0.120315134849142 0.0715989806526021
AT4G33000_at 7.44225782968881 7.26113226741926 6.98506242042662 6.13169702308906 7.97686597912855 7.21056421922756 7.97619143107193 7.6333423454651 7.33599038655542 8.31703188881823 8.53530203233992 8.2833612263677 8.12797356088022 8.20963719833625 7.96087831311012 8.16492614098535 7.60332014143845 8.00030169116151 8.54685583850519 0.171865963370511 0.168132733214878 0.182105712892469 0.190089228735330 0.169667205025368 0.191210407657993 0.168002843703958 0.175830859132520 0.193406043428538 0.173740709122153 0.173522890459183 0.171386489573774 0.177160521035719 0.172875229412086 0.17859118182759 0.168002843703958 0.184213449864862 0.174515838660849 0.182829800240060 4 4|0 +|/ 15925056 15926352 15925718.3 15924352 15926631 + gene protein_coding_gene FALSE TRUE AT4G33000.1|AT4G33000.2 CBL10 (calcineurin B-like protein 10); calcium ion binding Encodes a member of the calcineurin B-like calcium sensor gene family. Identical to Calcineurin B-like protein 10 (CBL10) [Arabidopsis Thaliana] (GB:Q7FRS8;GB:O82641;GB:Q8GYR3;GB:Q8GZD7); similar to ATCBL3 (CALCINEURIN B-LIKE 3) [Arabidopsis thaliana] (TAIR:AT4G26570.1); similar to calcineurin B-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81532.1); similar to calcineurin B-like protein 10 [Oryza sativa (japonica cultivar-group)] (GB:ABA54185.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.229048528912746 -1.43481282301978 0.187508161062825 1 1.73073867482099 15.4158084774581 -0.229048528912746 0.209517879198091
AT3G06960_at 6.8043842585315 7.11424278123404 6.54217250609025 6.63790695752289 7.08990336747716 5.94071468086540 6.06575085687851 6.40329004433485 5.43998555148636 5.84922352076768 5.57547232838279 5.37063873806293 5.56115443440562 5.58948972101629 4.87251427262298 5.44145856436612 4.89724162392227 4.88925592121865 5.80406668324664 0.266821626816685 0.259862933206742 0.273027352305288 0.265004063219028 0.259009360822556 0.278336466236399 0.266265842724219 0.267951463374469 0.284378775667557 0.260406801127748 0.260497209638923 0.258084778147081 0.258084778147081 0.263846928455065 0.268862077780875 0.258084778147081 0.268509177599689 0.264517287638458 0.265244491373447 3 3|0 -|/ 2194394 2195383 2194857.2 2194214 2196553 - gene protein_coding_gene FALSE TRUE AT3G06960.1|AT3G06960.2 PDE320 (PIGMENT DEFECTIVE 320) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44640.1); similar to Os01g0251000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042598.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81221.1) -0.233673995961492 -1.43440927813578 0.187619749191480 1 1.73025791982621 12.0610015744501 -0.233673995961492 0.214737390446144
AT2G32980_at 5.91313385641695 5.99474133978277 5.05352390372961 5.46799502962995 5.73391277205709 5.95716609041874 5.6136631360078 5.6896763494581 5.31671645113637 5.68291791693672 5.76412516510408 5.27304752651021 5.31444639917805 5.67097591895077 5.97988631822119 5.43896272799306 5.21558257255374 5.51861106686805 5.58231564647119 0.213818699552774 0.212616547295522 0.217902850042722 0.223525724060466 0.211455004004175 0.234314363726717 0.215908143847221 0.217532433035953 0.224559120819456 0.222201307228134 0.216631805496649 0.211455004004175 0.211455004004175 0.215546810282307 0.219297528795182 0.215469465030667 0.223656103273231 0.220916673631924 0.221331814710741 2 0|2 /|- 14004672 14005634 14005059 14004459 14006905 - gene protein_coding_gene FALSE TRUE AT2G32980.1 similar to Os08g0204800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061229.1); similar to PREDICTED: similar to MGC108135 protein [Strongylocentrotus purpuratus] (GB:XP_787845.1) -0.127508090524961 -1.43307628920428 0.187988759812641 1 1.72867044489492 11.2026122514062 -0.127508090524961 0.0837245095806619
AT3G19870_at 7.1311168448364 7.10870973523456 6.99461026331667 7.20474558722244 6.79001897271535 6.88060426505212 6.62202320680079 6.51124195298317 6.9152434444781 6.42919649812108 6.81445744334166 6.97566771407126 6.31619711233538 7.09312251834775 7.04152056573472 6.83208603345156 6.30372055740636 6.56871239608005 6.61984132897437 0.172912650854880 0.171952106383281 0.188006718856793 0.178728622085259 0.176921351974719 0.181145199714977 0.175317924841011 0.183325849919699 0.184840447545432 0.169353234323335 0.171979194836337 0.178827188048917 0.17361939459492 0.181478137916824 0.178334562439363 0.175406667273543 0.207625013375723 0.172536927464555 0.172002304092408 3 3 + 6910526 6911065 6910751.727 6907487 6911239 + gene protein_coding_gene FALSE TRUE AT3G19870.1 binding similar to Os02g0829400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048606.1); similar to unnamed protein product; gene_id:MPN9.11 unknown protein [Medicago truncatula] (GB:ABE78160.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.106323477925581 1.43271891235143 0.188087800068997 1 1.72824498464609 13.6043568367472 0.106323477925581 0.0441669658333994
AT4G00570_at 8.03857788053989 7.84509379704371 7.42959150223803 7.24619632946015 7.24955213378591 7.09377819863442 7.22768953639879 7.25464848298275 7.46787700505103 7.25450917764414 7.73182075312124 7.89103537956753 7.18754232308871 7.62303864252732 8.0269031159664 7.22879092563 7.01995030859643 7.06190677255721 7.34419253170033 0.193242943437435 0.188532301330888 0.201003235833051 0.208119999226541 0.195661065060769 0.210492319265887 0.194834490118461 0.195528696001713 0.235436164037069 0.221398154758945 0.188532301330888 0.192783341996132 0.2020512802786 0.211252252912535 0.191072538963618 0.189191776985719 0.195288682314012 0.200615451268162 0.207879120677811 4 4|0 -|/ 242844 244038 243407.333 242515 246771 - gene protein_coding_gene FALSE TRUE AT4G00570.1 malate oxidoreductase, putative similar to malate oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT2G13560.1); similar to putative mitochondrial NAD+-dependent malic enzyme protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13628.1); similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37225); similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47850.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) -0.110437796855820 -1.43192492490867 0.188308001983281 1 1.72729995499627 14.8365908655173 -0.110437796855820 0.053636389423704
AT1G79090_at 7.07281125774951 7.05659909264599 6.33143811416035 6.73184293762512 7.07015103114682 6.29189423586444 6.53291405778001 6.70932707952784 6.17287853449994 5.61898911730456 6.25378822907006 6.43611223256519 6.61595185151689 6.22466892018885 6.19794079368805 6.95705048086236 6.54578979790173 5.84001939215971 5.56524957060198 0.224846856866614 0.219932683999176 0.22696203624981 0.223315541794222 0.22250354580621 0.229876623290739 0.221277226816105 0.225455057263785 0.232977011334472 0.224702442056455 0.22218672588322 0.226182978494095 0.224636499834196 0.230094438404677 0.226638172308280 0.219932683999176 0.232566815522135 0.228258757693647 0.219932683999176 1 1 - 29754535 29754987 29754775.909 29754006 29758200 - gene protein_coding_gene FALSE TRUE AT1G79090.1|AT1G79090.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22270.1); similar to Os02g0517300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046960.1); similar to Os01g0769000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044369.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52714.1); contains domain gb def: YUP8H12R.29 protein (PTHR21551:SF11); contains domain FAMILY NOT NAMED (PTHR21551) 0.180814089607646 1.43166274245979 0.188380764291835 1 1.72698796339092 12.8094327023356 0.180814089607646 0.154532296565894
AT4G19490_at 5.15159836085419 5.41292657529451 5.63379659490905 5.50219863454173 5.64455950355388 5.13426492234086 5.59792088863427 5.1624260194617 4.52220600047422 5.03470547645794 4.83758714802282 5.07011468876867 5.04471618460034 4.81058787049258 4.96388640195992 5.31600816385131 5.03045252012639 5.05059241471069 4.98296581864176 0.257771534176356 0.274937777450631 0.263239782241332 0.268679652295853 0.265593608214886 0.262316697263078 0.268956095364915 0.257771534176356 0.266432203137446 0.275857143849699 0.264883851083085 0.262733867463384 0.272182072695265 0.285841244478681 0.273356063819316 0.272787851063555 0.267917995310066 0.27416409648536 0.257771534176356 4 4 + 10620737 10622665 10621622.625 10615807 10623532 + gene protein_coding_gene FALSE TRUE AT4G19490.1|AT4G19490.2 protein binding similar to OSJNBa0083I11.13 [Oryza sativa (japonica cultivar-group)] (GB:CAE04303.2); similar to hypothetical protein CNBC0010 [Cryptococcus neoformans var. neoformans B-3501A] (GB:EAL22287.1); similar to Os04g0212100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052256.1); contains InterPro domain Vps54-like; (InterPro:IPR012501) 0.158177180825245 1.43101071590551 0.188561824824496 1 1.72621220865528 10.3360209070777 0.158177180825245 0.12665743039126
AT3G01560_at 6.62634680538728 7.12559729299366 6.33131517904363 6.98562231843759 7.52809137445238 6.79318941176382 7.03308941947508 6.51580404240968 6.61421217745413 6.56712077154561 5.95335752835209 5.84028825266389 6.3332999296084 6.40822339343052 5.45926756869608 6.82681366942274 5.94897211166239 6.33587010798562 6.8634384187171 0.23425602894366 0.236482507747308 0.243049674857678 0.241415165147608 0.235215078765076 0.250499767204840 0.23425602894366 0.235941493984265 0.245838945781962 0.241002859785398 0.240180475661749 0.23425602894366 0.236636988335879 0.238457806236863 0.243439640618611 0.23425602894366 0.279931056224244 0.239795924681279 0.23425602894366 3 3 + 221329 221676 221490.182 219589 221886 + gene protein_coding_gene FALSE TRUE AT3G01560.1 proline-rich family protein similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to vegetative cell wall protein gp1 -like [Oryza sativa (japonica cultivar-group)] (GB:BAD68319.1); similar to Os01g0169900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042136.1); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132); contains InterPro domain Protein of unknown function DUF1421; (InterPro:IPR010820); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.229491852409979 -1.42991555092953 0.188866282213911 1 1.72490968571581 13.2773079935621 -0.229491852409979 0.210887820004329
AT4G31410_at 6.98531111627197 6.96708853737547 7.2876720188909 6.875215219483 6.96974656676577 7.29031347779614 6.1770265318577 6.53348320371001 6.99566115287295 6.84980450391882 6.76787833632671 6.50325099989494 7.00145460427706 7.0601737317664 6.48129197176569 6.96737974234605 6.89196803941678 6.56287344866316 6.94390904547733 0.164975491482752 0.152024343184325 0.157195888343067 0.159512125077776 0.156312762589064 0.157532067627800 0.166374592038232 0.15569533305757 0.174209604047759 0.157494526790672 0.153942470413139 0.155456208288907 0.156127823154813 0.156803923284118 0.158936823192748 0.155166314762177 0.158022984699805 0.158612256464973 0.152425921646519 4 4|0 +|/ 15244673 15245445 15244937.5 15243729 15245844 + gene protein_coding_gene FALSE TRUE AT4G31410.1|AT4G31410.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24740.2); similar to Os02g0150900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045905.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38050.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.144875882657117 1.42839936488261 0.189288492864188 1 1.72310737859502 13.7403947973839 0.144875882657117 0.109487293983409
AT4G25720_at 7.94179397503145 7.90046934216836 7.75186883860949 7.93667609300825 7.89857110409642 7.5713677513628 7.1903696147212 7.16628947076793 7.56470976016072 7.0068876208717 7.53812443636083 7.24024872816223 7.129274166457 7.34130014953037 7.25461976200223 7.30683388265625 6.78860299536156 7.09049803377458 7.0842485769107 0.160691480298473 0.157318468534867 0.169479686446210 0.158439950245102 0.165470478218673 0.163632051631654 0.162415742033828 0.157553211379385 0.163746892557149 0.170884709931082 0.157461328494199 0.160721262281925 0.164131771746611 0.167212319264341 0.172087168199720 0.161495793614667 0.171959877494032 0.169474855031745 0.164994450440127 4 4|0 -|/ 13100003 13101609 13100918.6 13099821 13102587 - gene protein_coding_gene FALSE TRUE AT4G25720.1|AT4G25720.2|AT4G25720.3 glutamine cyclotransferase family protein|catalytic similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Glutamine cyclotransferase; (InterPro:IPR007788)|similar to Chain A, Unbound Glutaminyl Cyclotransferase From Carica Papaya. (GB:2IWA); similar to glutamine cyclotransferase precursor [Carica papaya] (GB:AAC27745.1); contains InterPro domain Glutamine cyclotransferase; (InterPro:IPR007788); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) 0.116231398035382 1.42801372995798 0.189396011606928 1 1.72264914678801 14.8845773180220 0.116231398035382 0.0655562802941324
AT2G04350_at 9.16493707834918 9.17223538381552 9.52571474891465 9.3759220140994 9.44661320965557 8.98823376219908 9.92307173591867 9.6517311500553 8.6467079237042 9.1305481508964 8.51152370822293 8.61411019238838 8.90315915483225 8.9155018368231 8.4144033427213 8.7640548507456 8.9567020884621 8.69755606644312 8.76759415155618 0.101563918649597 0.0981459009626105 0.100404505766353 0.099524363522503 0.097907377510544 0.099942069742317 0.105197010714963 0.0974961178629462 0.0979038422171304 0.100220347583033 0.103998496273111 0.0989501282739144 0.0928634945230019 0.097150397284901 0.105230964343814 0.098596008435234 0.108803533538011 0.095494095839003 0.0963774420363995 2 2|0 +|/ 1518529 1519093 1518813.2 1515802 1519305 + gene protein_coding_gene FALSE TRUE AT2G04350.1|AT2G04350.2 long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8) similar to LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9), long-chain-fatty-acid-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G77590.1); similar to Os05g0317200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055177.1); similar to putative long chain acyl-CoA synthetase 9 [Trifolium pratense] (GB:BAE71220.1); similar to long chain acyl-CoA synthetase [Brassica napus] (GB:CAC19877.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.135014953478287 -1.42749058326536 0.189541955205178 1 1.72202763087127 18.1912622922753 -0.135014953478287 0.095764854708969
AT1G68000_at 6.87467802405363 7.51374528080878 7.17350923029485 7.37481028427127 8.50419650510996 7.38405166878485 7.3684784532359 7.28144293978051 7.6360654606879 7.15918746603194 7.6048936999565 7.60439931176001 7.6432200043581 7.54441649908362 6.9398197445655 7.40716527248094 7.22489287386834 7.58716049036145 7.12901544811365 0.222297732518153 0.209533867943483 0.220062553402989 0.210752039105847 0.231941221601456 0.218205299390635 0.215825759264798 0.212356282377001 0.220550135003347 0.211740799566842 0.214026220310424 0.208259491437040 0.208259491437040 0.208259491437040 0.220634714706774 0.214328341188903 0.239023824185804 0.212358153838967 0.211728181440817 1 1|0 +|/ 25495177 25496380 25495870.857 25494677 25496716 + gene protein_coding_gene FALSE TRUE AT1G68000.1 ATPIS1 (Arabidopsis thaliana phosphatidylinositol synthase 1); CDP-diacylglycerol-inositol 3-phosphatidyltransferase phosphatidylinositol synthase 1 Identical to CDP-diacylglycerol--inositol 3-phosphatidyltransferase 1 (EC 2.7.8.11) (Phosphatidylinositol synthase 1) (PtdIns synthase 1) (PI synthase 1) (AtPIS1) (PIS1) [Arabidopsis Thaliana] (GB:Q8LBA6;GB:O81846); similar to CDP-diacylglycerol--inositol 3-phosphatidyltransferase, putative / phosphatidylinositol synthase, putative [Arabidopsis thaliana] (TAIR:AT4G38570.1); similar to phosphatidylinositol synthase [Brassica napus] (GB:AAM77369.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.242981138211002 1.42722501095783 0.189616080175049 1 1.72171217254370 14.8106567709585 0.242981138211002 0.226379625282177
AT1G80230_at 7.36259805451425 7.54712686496015 7.33378600606861 7.41767624554096 7.31685915264496 6.89408430424792 7.31487331659323 7.55632763537333 6.88358759745028 6.83679971277795 7.33522770845473 7.64099222218818 7.28234414841943 7.21578804053283 7.18211636205054 7.3463598693419 7.12242724051843 6.83886175793343 6.61109144286493 0.149600810347691 0.141626546279216 0.145002963264606 0.146479427402652 0.142350966580838 0.154762151841442 0.149876238983392 0.141052660256547 0.147154252467838 0.145183540589505 0.141828283161259 0.143388045082873 0.146508637513282 0.148243186504577 0.143670433831784 0.146185229787015 0.158513681095597 0.145875016048135 0.150478566977258 1 1|0 -|/ 30174688 30175725 30175060.778 30174348 30175993 - gene protein_coding_gene FALSE TRUE AT1G80230.1 cytochrome c oxidase family protein similar to cytochrome c oxidase family protein [Arabidopsis thaliana] (TAIR:AT3G15640.1); similar to cytochrome c oxidase subunit Vb [Pisum sativum] (GB:BAF30483.1); contains InterPro domain Cytochrome c oxidase, subunit Vb; (InterPro:IPR002124) 0.131862521790458 1.42648109098947 0.189823853470165 1 1.72082869335208 14.3542535740151 0.131862521790458 0.09126516667004
AT3G18430_at 8.57418354846803 8.3849832041313 8.8259635000244 8.76110668649494 9.26079070075215 8.51635303003508 8.70093817326934 8.42221466925793 8.111173063825 7.94234467391588 8.15330766867915 7.82065777811435 7.91556597659278 8.06955463031852 7.92590037882428 7.9937981800697 7.83126748619957 8.18782823064398 7.85158234603085 0.158215431454815 0.153285089522153 0.165668704189461 0.153285089522153 0.166579372237116 0.168882184509363 0.165488367068710 0.160656614843185 0.171743195609762 0.162950462356010 0.156667248267637 0.154613848897291 0.164330913323078 0.160334741971579 0.154876567292275 0.155236848362874 0.174724319445796 0.176878664862437 0.159545934669519 3 3|0 +|/ 6326187 6327288 6326673.3 6325921 6327638 + gene protein_coding_gene FALSE TRUE AT3G18430.1 calcium-binding EF hand family protein similar to CAM9 (CALMODULIN 9), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G51920.1); similar to calcineurin-like protein [Eucalyptus grandis] (GB:AAL25647.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.169670963567358 1.42582100088845 0.190008379866403 1 1.72004499434020 16.6586175569396 0.169670963567358 0.141849669719664
AT3G27060_at 5.94450926101165 6.77442520244042 6.00950928024594 5.81066835685177 6.93402565442923 6.59265142637029 7.35009466742879 7.75520502293299 7.30014630496576 7.88859179670218 7.52045483063111 8.10133588843143 7.91245891567154 7.44666752475938 8.23469937086985 7.96479711247343 7.3968610835446 6.93724902323325 7.19925380239741 0.190422707711792 0.187513201116745 0.19452608800457 0.197030671987987 0.207713407615605 0.201420431363105 0.196994181817517 0.198561618181898 0.200576423151345 0.192156091272068 0.198418908204762 0.192113027889751 0.193164822249731 0.205954439968504 0.19818731072264 0.187513201116745 0.194237287581605 0.187901107670133 0.188443086105959 3 3|0 -|/ 9981225 9981861 9981551.4 9981103 9982532 - gene protein_coding_gene FALSE TRUE AT3G27060.1 TSO2 (TSO2); ribonucleoside-diphosphate reductase Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes. TSO2 transcription occurs predominantly at the S-phase of the cell cycle and its expression pattern is consistent with its role in dNDP biosynthesis during DNA replication in actively dividing cells. Critical for cell cycle progression, DNA damage repair and plant development. Identical to Ribonucleoside-diphosphate reductase small chain C (EC 1.17.4.1) (Ribonucleotide reductase small subunit C) (Ribonucleoside-diphosphate reductase TSO2 subunit) (TSO2) [Arabidopsis Thaliana] (GB:Q9LSD0); similar to RNR2/RNR2A (RIBONUCLEOTIDE REDUCTASE 2A), ribonucleoside-diphosphate reductase [Arabidopsis thaliana] (TAIR:AT3G23580.1); similar to Ribonucleoside-diphosphate reductase small chain (Ribonucleotide reductase small subunit) (Ribonucleoside-diphosphate reductase R2 subunit) (GB:P49730); contains InterPro domain Ribonucleotide reductase; (InterPro:IPR000358); contains InterPro domain Ribonucleotide reductase-related; (InterPro:IPR012348); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078) -0.196346679149556 -1.42564635559546 0.190057227668106 1 1.71983768008594 14.2223758273257 -0.196346679149556 0.173827267616196
AT1G76240_at 5.92501621361165 6.26368117257077 6.09472821883192 5.91627362543448 6.50347126301869 6.52028822428091 7.07250295370397 7.71727781396964 7.2693761873229 7.50141952709829 8.88765011463612 8.7026695307322 8.75866166755802 8.83654448002746 7.80792155338804 8.27576570733346 7.73549884894496 7.91540823490682 7.90669123608583 0.251739563864276 0.241036475548845 0.268225873086880 0.252501870505094 0.23379890012324 0.262546183030743 0.240257967783120 0.243030068537165 0.239821905913867 0.237798989540317 0.234785345324390 0.239971700977872 0.230153595109068 0.246352398842884 0.2347951890606 0.233437877335929 0.251510338178798 0.244992058122530 0.238054789590481 1 1 - 28607850 28608410 28608191.091 28607705 28608823 - gene protein_coding_gene FALSE TRUE AT1G76240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17080.1); similar to Os06g0725700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058624.1); similar to Os06g0725500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058623.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61705.1); contains InterPro domain Protein of unknown function DUF241, plant; (InterPro:IPR004320) 0.159961747391352 1.42496380278129 0.190248240920281 1 1.71902759115568 14.4637436026910 0.159961747391352 0.12979762302314
AT1G70160_at 10.8525419644820 11.1197509587641 11.0842390537935 11.1099496786391 11.2975638530506 10.9012410975598 10.9761471887564 10.8147868982943 10.1297601612918 10.3931337648544 10.435699057746 10.2053464576642 10.5253128114897 10.1607584049286 9.97507007284273 10.4296068858085 10.6335960237676 10.3525178933285 10.1940933948056 0.110981205138152 0.111218309057843 0.107554496622593 0.109075588664387 0.108666201603507 0.112510923675976 0.108621982907705 0.109708337238377 0.127588216356918 0.117743177263351 0.112207687203518 0.107159547227131 0.114974132730234 0.119421488866075 0.109960423510443 0.108007810830597 0.122261658575424 0.120516430996466 0.112570926782445 1 1|0 +|/ 26425208 26425954 26425661.7 26423612 26426192 + gene protein_coding_gene FALSE TRUE AT1G70160.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54870.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G27020.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53001.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB89049.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93629.1) 0.129092172741461 1.42406047727957 0.190501295226987 1 1.71795582444092 21.3088946989663 0.129092172741461 0.0874175408509952
AT3G51620_at 7.32766468877192 7.69947675420799 7.46700908201642 7.80200775032584 7.85095771532643 7.57195751441707 7.04063844714366 6.9990681970327 7.31274346920047 7.23277438020587 7.0050915623625 7.10571089604213 7.35987150791603 6.92455660166031 6.55476519314865 7.59563209902281 7.64851330187088 6.66622828805379 7.17263079273312 0.205368195985271 0.203032989554631 0.221306912596156 0.205289319666944 0.213571096702703 0.208229357346716 0.207264513574382 0.207716379372130 0.206980860640725 0.203032989554631 0.207500661594556 0.203032989554631 0.207782796172434 0.211805307351752 0.219673423519263 0.203032989554631 0.211192838163063 0.206295743478010 0.211573991426284 3 3|0 +|/ 19158140 19158705 19158429.222 19154631 19159221 + gene protein_coding_gene FALSE TRUE AT3G51620.1|AT3G51620.2 similar to nucleotidyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G56320.1); similar to Os11g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065579.1); similar to nucleotidyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91191.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201)|similar to nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT3G61690.1); similar to Os11g0114700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065579.1); similar to nucleotidyltransferase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91191.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201) 0.137217147139429 1.42399928280378 0.190518448640013 1 1.71788323345038 14.6433120496416 0.137217147139429 0.0994179866684084
AT1G42440_at 6.38217666395257 6.65651293023171 6.55309226309095 6.81017609474355 6.96616881770305 5.69135612261399 7.22438946489795 7.22871195922168 4.98792684730662 5.34262627265047 5.01578786382246 5.46615615723972 5.09776586148649 5.10392319997542 5.04995998941666 5.53143902743898 5.3703644714733 5.10876791300148 5.6932853767465 0.223908518068125 0.223099283027044 0.231197494143548 0.230242631937557 0.223360740037164 0.233564075106281 0.231148211539275 0.226084468211220 0.229394270803113 0.229079523494668 0.228327331963871 0.228961329065165 0.225757394619223 0.224389382667525 0.223099283027044 0.224928917388663 0.234103381920702 0.225230356455016 0.225296096814383 1 0|1 /|- 15897988 15898846 15898459.6 15897725 15902495 - gene protein_coding_gene FALSE TRUE AT1G42440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G06720.1); similar to Os11g0298400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067728.1); similar to PREDICTED: TSR1, 20S rRNA accumulation, homolog [Gallus gallus] (GB:XP_001234320.1); contains InterPro domain AARP2CN; (InterPro:IPR012948); contains InterPro domain Protein of unknown function DUF663; (InterPro:IPR007034) -0.245504184228737 -1.42281987473616 0.190849311645068 1 1.71648453361429 11.9687230692484 -0.245504184228737 0.230007719597703
AT4G21800_at 7.42236181450092 7.60912335159874 7.69090833866316 7.55924298745905 7.37478050544536 6.95958899959188 7.19243568571824 6.98522849131118 5.2076906299986 6.0663466842443 5.79093628923855 5.84894056636679 5.96442081234534 6.26347973944747 5.83067044970353 6.21984993851172 5.84350782539447 6.23711903091088 6.22495168863215 0.245047120171442 0.238635733385379 0.241461021835220 0.239757122585062 0.245178989692792 0.253046313102109 0.237017923690399 0.240955926612020 0.254986071646606 0.250619502795869 0.241532815320685 0.241422674564636 0.240344243694597 0.24647564867694 0.241929348135653 0.237715392719092 0.254881958736062 0.248555476517879 0.242580946218257 4 4 + 11574227 11574962 11574509.727 11572801 11575157 + gene protein_coding_gene FALSE TRUE AT4G21800.1|AT4G21800.2 ATP-binding family protein similar to EMB1705 (EMBRYO DEFECTIVE 1705), ATP binding [Arabidopsis thaliana] (TAIR:AT5G22370.1); similar to ATP-binding family protein [Arabidopsis thaliana] (TAIR:AT4G12790.4); similar to Ras GTPase; AAA ATPase; Protein of unknown function, ATP binding [Medicago truncatula] (GB:ABE85331.1); similar to Os03g0312600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049925.1); contains InterPro domain Protein of unknown function, ATP binding; (InterPro:IPR004130) 0.130356059602878 1.42281814780981 0.190849796472303 1 1.71648248608853 13.2656397296768 0.130356059602878 0.0895103303879926
AT2G38450_at 6.51409594171352 6.94738331443862 6.81883452460256 6.97249038449226 7.15162278097618 7.16690625442227 7.22647668758721 7.62211392757257 6.67067907361953 6.57073066526139 7.10031999282224 6.98415385002338 7.36952431389453 6.98409529065362 6.8146541809378 6.92014749247099 7.04477239976469 6.7309023964863 6.74281738691682 0.176335692196676 0.167208419414109 0.169258957032964 0.165688952081582 0.167763282207678 0.163187070439920 0.175209253908082 0.169987182171885 0.162025314356501 0.165749473514060 0.162998474750972 0.161530254317836 0.164273799950338 0.166398334009435 0.170129646051975 0.162375440372996 0.182917940208404 0.175493205436529 0.160300952580258 2 2|0 +|/ 16109200 16109582 16109323 16109053 16109994 + gene protein_coding_gene FALSE TRUE AT2G38450.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G05360.1); similar to Sel1-like repeat [Medicago truncatula] (GB:ABE84889.1); similar to Os05g0342900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055251.1); similar to Os03g0298600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049844.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.141054107997228 1.42280652872434 0.190853058509096 1 1.71646870998753 13.8799806177578 0.141054107997228 0.104995914230411
AT4G19350_at 7.11703414941687 7.3271050043984 7.17278434688728 6.98739800148068 7.84710888121912 7.27771933474085 7.53215255668742 7.2128031530207 6.75206677767453 6.81159911372309 7.20723288635841 7.15729119302515 7.40274633440754 7.23369637352885 6.481905245327 6.98049910804785 7.33549251807609 6.55807082791057 6.71696877557938 0.183092055619766 0.185247337194602 0.191146722822431 0.186643565232785 0.183830099005935 0.181943067354223 0.182878957072888 0.184796752339574 0.207663325206994 0.199018718893562 0.180893696245877 0.178622864830323 0.182668487894581 0.187942626919731 0.191400793597492 0.178622864830323 0.187595281362125 0.193603420223862 0.192407704016460 4 0|4 /|- 10562226 10563223 10562562.375 10562034 10563768 - gene protein_coding_gene FALSE TRUE AT4G19350.1 EMB3006 (EMBRYO DEFECTIVE 3006) similar to Os08g0162500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061059.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99789.1) 0.154192090188659 1.42088683082586 0.191392678235731 1 1.71419353122332 14.2116773617285 0.154192090188659 0.122940249736495
AT3G45230_at 4.43892483956377 4.87092220131059 3.89512609836332 4.0312205356958 4.50592381785594 4.65732335866859 5.31023791546861 5.18796593309362 5.93419210506552 4.69474598037519 6.51774647546842 6.28744919337502 6.0576270250332 5.95952661612804 5.61558980656971 5.46719873278339 4.87951875384997 4.93462620499601 5.24157564785417 0.201353874801923 0.199549678753594 0.220797345702727 0.206599506091616 0.204954739541157 0.223943794338743 0.215066212483875 0.209474916854780 0.200243313120305 0.210418765103366 0.203472711369620 0.202424010585983 0.201072142484147 0.205642801260789 0.214757346550882 0.202936662173158 0.200748398461618 0.218012203763414 0.209829156449512 3 3 + 16580135 16580608 16580374.364 16580036 16580812 + gene protein_coding_gene FALSE TRUE AT3G45230.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G60630.1); similar to Os03g0852400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051923.1); similar to glycoside hydrolase, family 6 [Acidothermus cellulolyticus 11B] (GB:YP_872374.1) -0.127437581559699 -1.42087516118297 0.191395962591222 1 1.71417970612370 10.1147463852311 -0.127437581559699 0.0853101001372525
AT4G34620_at 12.8489292348340 12.9833770331239 12.5124591539596 12.7393154712693 12.7983622910816 12.7325865767747 12.9785557135239 13.3518818190664 13.7033686441021 13.4782715846679 13.8175498461385 13.8429231162522 13.5795811754072 13.7022176658947 13.7474293371716 13.5597746067253 13.2603206408474 13.6109517920877 13.4472142352001 0.0690835782266905 0.0655596831595921 0.0675538558977582 0.0661696753436189 0.066269948374118 0.0692424695592442 0.0654145286375609 0.068349333221481 0.0737472251419442 0.0667947412636306 0.0663782009154415 0.065042716353364 0.0666559750860271 0.0704259097984026 0.0702288636047176 0.0675542692529194 0.0707425471283271 0.068538775669963 0.0674183983893318 4 4 - 16535104 16536072 16535536.455 16534860 16536176 - gene protein_coding_gene FALSE TRUE AT4G34620.1 SSR16 (ribosomal protein S16); structural constituent of ribosome Encodes ribosomal protein S16, has embryo-defective lethal mutant phenotype similar to ribosomal protein S16 family protein [Arabidopsis thaliana] (TAIR:AT5G56940.1); similar to Ribosomal protein S16 [Medicago truncatula] (GB:ABE93061.1); similar to Os09g0498100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063564.1); similar to Os08g0517900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062247.1); contains InterPro domain Ribosomal protein S16; (InterPro:IPR000307) -0.12393152114511 -1.41976961179785 0.191707336143077 1 1.71287025512676 26.459705916982 -0.12393152114511 0.0799128184737623
AT3G21260_at 5.55356688321155 5.6489679832587 6.39233702873596 6.23711366716573 8.18032053301974 7.43276800821926 7.85201518839446 7.8525655726245 6.64548539679958 7.85984692556158 7.54924485255633 7.77300014134761 7.76422511533356 7.94300845279446 7.02088526859939 7.87571677904764 7.63573397243015 7.4456073612305 8.40252585164434 0.226754285992317 0.215657149139735 0.219480757301934 0.22418581840044 0.221630017562059 0.222733123007276 0.214829017691838 0.225562445175859 0.225093206243102 0.226931416139465 0.220239076881774 0.22113457826378 0.218138378624925 0.214829017691838 0.231575079218637 0.220528991421922 0.222146828768843 0.222171652846131 0.222001934240064 3 3|0 -|/ 7464278 7464824 7464491.5 7464026 7465100 - gene protein_coding_gene FALSE TRUE AT3G21260.1|AT3G21260.2 GLTP3 (GLYCOLIPID TRANSFER PROTEIN 3) similar to GLTP1 (GLYCOLIPID TRANSFER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G33470.2); similar to H0525C06.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66838.1); similar to OSJNBa0006B20.21 [Oryza sativa (japonica cultivar-group)] (GB:CAD40826.2); contains domain GLYCOLIPID TRANSFER PROTEIN-RELATED (PTHR10219) 0.161915460330912 1.41889665441492 0.191953512932423 1 1.71183671444702 14.5246470918717 0.161915460330912 0.133154374052401
ATCG00640_at 10.5671077015682 10.7932151284265 10.6331145892439 10.8153130938200 10.4872060394599 10.6926908997830 10.8108853366464 11.1454518668504 11.3721215753277 11.1639557874921 11.8030393524533 11.8513096302821 11.6535586713535 11.7434436154427 11.7503747522572 11.8052246405066 11.2952979454992 11.6228287755720 11.2600439107322 0.132575271533271 0.134024267552125 0.13618492025255 0.135946374458792 0.132840612939669 0.135446544246950 0.128664834117485 0.132423172945512 0.138009779757152 0.135002010012014 0.131837643127582 0.128634150651335 0.126376068508660 0.143165050354404 0.124799867698548 0.129785024967108 0.129098627066325 0.141153130965184 0.124799867698548 C C + 67512 67653 67584.818 67488 67688 + gene protein_coding_gene FALSE TRUE ATCG00640.1 encodes a chloroplast ribosomal protein L33, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L33 (rpl33) [Arabidopsis Thaliana] (GB:P56796); similar to ribosomal protein L33 [Drimys granadensis] (GB:YP_784407.1); contains InterPro domain Ribosomal protein L33; (InterPro:IPR001705) 0.126588531136991 1.41711852473743 0.192455803247377 1 1.70973264085913 22.2211272973605 0.126588531136991 0.0845101699194377
AT4G33750_at 6.63333394448847 7.2382906638934 6.99670081266335 7.17182042136475 8.04497900666076 7.72087756774758 7.36531218890097 7.72307522703833 7.62257749205472 7.29819960981847 7.73797969234522 7.85344555640164 7.8833069781156 8.00103389775257 6.82674139731106 7.89453992875199 7.09359158029759 7.5461604021779 7.6346180636361 0.222436177723398 0.206944079152221 0.219591284245221 0.220875890020912 0.204431059325773 0.21250640457607 0.220406571613878 0.212850793882266 0.234125952256706 0.212007710142019 0.210770330523201 0.210054584221190 0.210087509126657 0.210763069722749 0.21038366802375 0.20430129104141 0.236135180055646 0.216561054437436 0.207266940667834 4 4 + 16188384 16188702 16188541.455 16188358 16188927 + gene protein_coding_gene FALSE TRUE AT4G33750.1 unknown protein 0.164863160001626 1.41583504012453 0.192819076077491 1 1.70821484328493 14.9233312212517 0.164863160001626 0.137322517125131
AT3G29230_at 6.72355579272422 6.67408350513014 6.47159249379332 6.24316055413251 7.00788392107444 6.45016995304955 7.64473806829848 7.58543572809657 6.7131937979543 6.88604982372541 6.80061679718968 7.35362013292456 6.73526687016707 7.19461988206655 7.7084549145706 7.1940730250047 6.70536733156085 7.15244034339893 6.71893773634376 0.158261871661940 0.162797383870612 0.166247547663935 0.157148348649639 0.162054529836028 0.160359028362829 0.162647564917376 0.163322769029775 0.164766983483940 0.16891519108404 0.160664739478548 0.155047045495715 0.155047045495715 0.159859697646797 0.163058620837682 0.155157826862870 0.158768480781595 0.160129911568977 0.164339138250217 3 3 + 11191271 11191813 11191552 11190040 11191842 + gene protein_coding_gene FALSE TRUE AT3G29230.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G08070.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99065.2); similar to Os12g0578000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067118.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.140460625140343 -1.41571135204565 0.192854115824808 1 1.70806861723495 13.7892197677632 -0.140460625140343 0.105149798944961
AT3G18190_at 7.77789945256893 7.84209243107698 7.19275914556205 7.59892615602362 7.47431923630764 7.49071258103542 7.51194114413738 7.82285739256291 7.09539287152223 7.34782817304578 7.42477076447796 7.57750568230348 6.89206836464969 7.15998539874165 7.62577873757219 7.03171840870412 7.01999471510346 7.07929535526168 7.11445462428636 0.150794519745523 0.155159430656691 0.156238267590866 0.150469940079553 0.157866292421360 0.163675589638577 0.167356401110642 0.152367893586694 0.159642734743221 0.159460210464093 0.148364938817303 0.158204607848823 0.148364938817303 0.155315679586898 0.148411783389383 0.148364938817303 0.154619592273777 0.153738340715249 0.152837590234032 3 3 + 6233249 6233752 6233506 6232132 6234066 + gene protein_coding_gene FALSE TRUE AT3G18190.1 chaperonin, putative similar to T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative [Arabidopsis thaliana] (TAIR:AT1G24510.1); similar to cytosolic chaperonin delta-subunit [Glycine max] (GB:CAE47772.1); similar to cytosolic chaperonin, delta-subunit [Glycine max] (GB:CAA09989.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus tauri] (GB:CAL53373.1); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, delta subunit; (InterPro:IPR012717) -0.129510268310357 -1.41539660410887 0.192943306157758 1 1.70769655086490 14.7950792263943 -0.129510268310357 0.0892583065823905
AT2G30410_at 8.39529776344244 8.36904137907484 8.24740935550531 8.15322228543661 8.64819273960451 8.42183853718405 8.52117038596423 8.38851577665185 8.42423653078415 8.41878798358092 8.7709009927559 8.91615982368052 8.44504796639915 8.86960992838396 8.8759372636548 8.5871313288117 8.45595301642634 8.72996293208957 8.48260059834156 0.120334450354147 0.109899616311916 0.112913869314536 0.118554407480462 0.110960725862367 0.108675821894239 0.108523086900318 0.115908485077056 0.122031474195482 0.117024450826162 0.110368544582396 0.110070599929596 0.1146003438791 0.107261882758592 0.116456083607235 0.110513344680106 0.116231015010069 0.111405117264958 0.11259885457697 2 2|0 +|/ 12966940 12967604 12967193.8 12966366 12967887 + gene protein_coding_gene FALSE TRUE AT2G30410.1 KIS (KIESEL); unfolded protein binding mutant has embryo defect; enlarged embryo cells and endosperm nuclei; Tubulin Folding Cofactor A Identical to Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1- chaperonin cofactor A homolog) [Arabidopsis Thaliana] (GB:O04350;GB:Q949R2); similar to putative tubulin folding cofactor A [Oryza sativa (japonica cultivar-group)] (GB:BAD22013.1); similar to Os02g0816500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048513.1); contains InterPro domain Tubulin binding cofactor A; (InterPro:IPR004226) 0.106811136052826 1.41520210717195 0.192998438834694 1 1.70746665850562 16.9671924999050 0.106811136052826 0.0484534739911172
AT4G31170_at 9.57008252530338 9.6194722523223 9.786448263552 9.7651509921863 9.57025506878333 9.49591555942906 9.23016233231156 9.09260548206996 9.5576798443589 8.96584348969524 9.40284161271166 8.93344469433342 9.20124084588273 9.31626022290417 8.5628557267112 9.1626715753612 9.270157155228 9.16416514474651 9.0874844848834 0.109083734910015 0.10584184503479 0.112911772159939 0.113399856988185 0.109178016211758 0.116409581999812 0.111352119015413 0.113366655843561 0.117564425583838 0.120678780403656 0.107684793237782 0.110755802149123 0.110636351242831 0.10584184503479 0.10874921139939 0.106130886060387 0.116770946080104 0.118603429084840 0.116478399254433 4 4 - 15153601 15154155 15153835.091 15153188 15155683 - gene protein_coding_gene FALSE TRUE AT4G31170.1|AT4G31170.2|AT4G31170.3 protein kinase family protein|kinase similar to serine/threonine/tyrosine kinase, putative [Arabidopsis thaliana] (TAIR:AT2G24360.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06448.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06449.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0996985861207769 1.41445361479353 0.193210736658078 1 1.7065821248205 18.6814485071018 0.0996985861207769 0.0286148744338228
AT1G75410_at 9.24208755123588 9.6903053227561 9.91833732384402 9.89959895617536 10.0757975397706 9.5558799601231 9.91625917406376 9.85002480496015 8.90326342851109 9.23230236380834 9.05761732123053 8.92512682701498 9.34920701619594 9.2568746450859 8.6089916983541 9.5282807084038 9.58663102839272 9.16533690820853 9.07743760059112 0.150943877649291 0.147341692396600 0.150124732066623 0.154075157071653 0.150818890661055 0.152610761319868 0.154714978446704 0.146731126945566 0.166227443258997 0.155760714699643 0.143652166468061 0.154194867382260 0.150871805874377 0.143286746223221 0.153057124625522 0.143286746223221 0.147219347403703 0.149889319030913 0.148097075930225 1 1 - 28303763 28304424 28304032.182 28303453 28306264 - gene protein_coding_gene FALSE TRUE AT1G75410.1|AT1G75410.2 BLH3 (BLH3); DNA binding / transcription factor|BLH3 (BLH3) BEL1-like homeodomain 3 (BLH3) similar to BEL10 (BEL1-LIKE HOMEODOMAIN 10), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G19700.1); similar to BEL1-related homeotic protein 30 [Solanum tuberosum] (GB:AAN03627.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.150745684932465 1.41394916382991 0.193353930692227 1 1.70598614271352 18.8964160291566 0.150745684932465 0.119389104224318
AT1G80420_at 7.39047860934207 7.35094792346767 7.3537561257993 7.11021371400751 7.56818095725731 7.39582014751528 6.76524070219907 6.26563132308935 6.88560876480842 6.3450332504957 6.32532493102543 6.25704321245515 6.88768890522202 6.64235880067808 5.4949460802246 6.85654441158855 6.51654068661651 6.99030068157417 6.67636447686133 0.177357031209082 0.177324473051756 0.185708225165744 0.180254778625556 0.18013549858431 0.180006202648223 0.177324473051756 0.177324473051756 0.198741862093241 0.183160016529975 0.180000754991130 0.181173982492103 0.184358148977445 0.189493579228543 0.184692298502101 0.177324473051756 0.182652719142757 0.189035274398965 0.178843223535294 1 1 - 30241378 30241893 30241656.556 30240112 30243427 - gene protein_coding_gene FALSE TRUE AT1G80420.1|AT1G80420.2|AT1G80420.3 DNA repair protein, putative (XRCC1) similar to Os06g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056780.1); similar to hypothetical protein LOC445480 [Danio rerio] (GB:NP_001003988.1); contains InterPro domain BRCT; (InterPro:IPR001357) 0.137296364785780 1.41383663084988 0.193385887031449 1 1.70585320795978 13.7160398350321 0.137296364785780 0.100936031488395
AT2G39930_at 8.91286996630784 9.08390080934673 8.98363081074918 8.81035926091324 9.36937800323364 8.83382209213764 9.76045800790576 9.5070252039267 9.4535767679342 9.84865793837936 9.61156629062946 9.51492648062945 9.40357622990704 9.59263872255652 9.5771293113105 9.75495053489414 9.53125539554919 9.88748268909863 9.44046633315417 0.120214811410889 0.109085387915827 0.121173574336380 0.113864814467504 0.107487608556734 0.115419054933764 0.112278667247909 0.109858789575218 0.119765765746151 0.106615891833168 0.106615891833168 0.106615891833168 0.116108888547495 0.107674966517299 0.120935746914999 0.106615891833168 0.117102067963395 0.110547054366082 0.107656785734412 2 2|0 +|/ 16677994 16679202 16678859.444 16673101 16679572 + gene protein_coding_gene FALSE TRUE AT2G39930.1 ATISA1/ISA1 (ISOAMYLASE 1); alpha-amylase/ isoamylase Encodes an isoamylase-type debranching enzyme. Mutations in this gene cause the loss of detectable isoamylase activity and the disruption of normal starch structure. Mutants have reduced starch content and abnormally structured amylopectins and phytoglycogens. It has been postulated that AtISA1 interacts with AtISA2 to form the Iso1 complex. similar to ATISA3/ISA3 (ISOAMYLASE 3), alpha-amylase [Arabidopsis thaliana] (TAIR:AT4G09020.1); similar to isoamylase isoform 1 [Pisum sativum] (GB:AAZ81835.1); similar to isoamylase isoform 1 [Solanum tuberosum] (GB:AAN15317.1); similar to Alpha amylase, catalytic re (GB:ABE90605.1); contains InterPro domain Alpha amylase, catalytic region; (InterPro:IPR006047); contains InterPro domain Glycoside hydrolase, family 13, N-terminal; (InterPro:IPR004193) -0.144237797390355 -1.41230721186839 0.193820656784883 1 1.70404712702767 18.7527260459706 -0.144237797390355 0.110852676984060
AT1G31550_at 9.01413685796268 9.0829422787777 7.7472554519875 8.07512340796276 7.65019262058333 7.29205321951038 6.62844242488671 6.58963675607942 6.4886994444475 6.86443086453691 6.83242205032929 7.52409146175538 6.4437199514701 7.41211393584803 6.92789080329262 6.7858451037522 6.24994068097394 6.82517108332289 6.10040343010088 0.202586274224484 0.207018321484893 0.203227549751671 0.206841288603332 0.200928186306709 0.214346562720671 0.198936967023038 0.197789449495859 0.220798159248748 0.21034413956805 0.192054538474577 0.197965284525161 0.192054538474577 0.192054538474577 0.194084181642815 0.196234158225973 0.209980259810645 0.196772598799542 0.206311100252917 1 1 - 11295670 11296362 11295970.818 11295506 11297360 - gene protein_coding_gene FALSE TRUE AT1G31550.1|AT1G31550.2 GDSL-motif lipase, putative|carboxylic ester hydrolase/ lipase similar to lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28600.1); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) 0.126502366532829 1.41171794974639 0.193988393823646 1 1.70335157747663 14.4398031923212 0.126502366532829 0.0851318656945236
AT3G12130_at 6.01618266122126 6.7138396411314 6.13653149095933 6.38020085262075 6.47766702415613 6.73079039139982 5.76817183086185 6.49615141274327 5.96033387381274 5.85850390833519 5.96681116440738 5.9890018030983 5.83799098813009 6.24042363586144 5.83354090963092 5.87752055652937 6.07720969263371 6.33658296496925 5.56767551211784 0.198631992537421 0.196550647233289 0.19854071148265 0.198671951507926 0.209080537760605 0.205401067060546 0.205731938243241 0.208950955749805 0.200202418253840 0.200809484971238 0.193863189187356 0.199810776101066 0.193067104732874 0.204715846117706 0.194502869868922 0.193067104732874 0.198730759505579 0.201659439666351 0.198064952226729 3 3 - 3864501 3865067 3864842.182 3864158 3866602 - gene protein_coding_gene FALSE TRUE AT3G12130.1 KH domain-containing protein / zinc finger (CCCH type) family protein similar to KH domain-containing protein / zinc finger (CCCH type) family protein [Arabidopsis thaliana] (TAIR:AT5G06770.1); similar to Os02g0194200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046176.1); similar to KH domain-containing protein / zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD35424.1); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.203545918140100 1.41001733280330 0.194473192933000 1 1.70134517048142 12.2476367360515 0.203545918140100 0.184782007660060
AT4G36980_at 6.37890710343076 5.68339809408017 6.50659097156967 5.81861420219984 6.74136473976066 5.94931571028426 6.33795916397859 5.66481510440915 6.33677938854493 6.82048011541396 7.18111908525292 7.32519623718505 7.51262118629508 7.28192269807425 6.7108783252054 7.71912802220706 6.96997459987011 6.31590058227955 7.3858527273322 0.218601699104699 0.200675611330708 0.197141249988092 0.19750307007841 0.2012585795545 0.208904787311168 0.196743898133404 0.188307162361306 0.208270741462546 0.191810642473843 0.19691155777247 0.194665967576870 0.190775265064737 0.201729543573864 0.195162465238499 0.197814148152287 0.220993437107785 0.198422647910967 0.197493833123694 4 4|0 -|/ 17433771 17434630 17434137.5 17433639 17437063 - gene protein_coding_gene FALSE TRUE AT4G36980.1|AT4G36980.2 similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT4G32420.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52566.1); similar to Os03g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050295.1); contains domain FAMILY NOT NAMED (PTHR13161)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52566.1); similar to Os03g0395900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050295.1); contains domain FAMILY NOT NAMED (PTHR13161) 0.258545027214044 1.40969018391188 0.194566574809481 1 1.70095935966092 13.1225189707857 0.258545027214044 0.24702056986742
AT2G36145_at 7.57583693552658 8.05497822691002 6.86375058531729 7.19203031092505 7.01813224345751 7.33513505151781 8.1408255126423 8.65927635990136 6.77267145691633 8.2027422373216 8.38606420007254 8.93876178062695 8.69948364984693 9.03715036418396 9.17785143729823 9.62608660991478 8.99159519264025 8.93132942918102 7.90494442918364 0.177136783298863 0.173697360941500 0.178124513214293 0.175641019129810 0.172269922835403 0.179041580683016 0.174427129887330 0.176727490425463 0.204995127087508 0.174703412253211 0.174111403657204 0.169042911599487 0.173676853017107 0.171268563633249 0.173437681974055 0.175284556983217 0.188372390568209 0.172482773691425 0.170717192358348 2 2|0 +|/ 15175697 15176398 15175978.222 15175620 15176585 + gene protein_coding_gene FALSE TRUE AT2G36145.1 similar to Os01g0862200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044880.1) 0.170643540444703 1.4095408362108 0.194609217802879 1 1.70078324954304 15.9051588403303 0.170643540444703 0.145471567883536
AT3G17450_at 5.86467540256332 6.16787969271172 5.86772143238239 5.87741486087062 5.86771346989324 6.41429745261815 5.60382721070244 6.120069387204 5.68263315274516 5.82888221676972 5.59515737197407 5.6100613929709 5.63357325751516 4.94363872958943 5.34068678515469 5.30639091943526 5.77730237682819 5.30402191088602 6.00659993948426 0.216712789924871 0.22076728750741 0.226413054859553 0.215731999754013 0.213354393819311 0.226147226582085 0.218148946140215 0.219283141317162 0.222575121530361 0.221330250756975 0.222605280058349 0.218663448258377 0.220843990781926 0.220599645824172 0.219472433531155 0.216864347245501 0.217692853891189 0.212827857832285 0.224371837544895 3 3 - 5972822 5973532 5973193.182 5972677 5976124 - gene protein_coding_gene FALSE TRUE AT3G17450.1 hAT dimerisation domain-containing protein similar to DNA binding / protein dimerization [Arabidopsis thaliana] (TAIR:AT3G22220.2); similar to Zinc finger, BED-type predicted; HAT dimerisation; Protein of unknown function DUF1544 [Medicago truncatula] (GB:ABE91460.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAB39405.1); contains InterPro domain Protein of unknown function DUF1544; (InterPro:IPR011523); contains InterPro domain HAT dimerisation; (InterPro:IPR008906); contains InterPro domain Zinc finger, BED-type predicted; (InterPro:IPR003656); contains InterPro domain Protein of unknown function DUF659; (InterPro:IPR007021) -0.166421897988221 -1.40890800329443 0.194789999666525 1 1.70003713775925 11.6120627949735 -0.166421897988221 0.140301003143906
AT1G70590_at 7.49925255392844 7.26638861066434 8.0150241316505 7.7292430745006 7.6309107294319 7.40265219686124 6.92954006264044 6.71319775446541 6.75728900818872 6.48572136493192 6.28315139188 6.21466405307049 6.5315100031228 6.78675242016814 6.1216396789028 6.74578158905167 6.27162176519425 6.15898358187738 6.94947373634734 0.228299864272422 0.231395163011458 0.229750073638661 0.238361361450522 0.231157841150731 0.235772267614193 0.228395807929539 0.226850684345729 0.243442051371161 0.231435529011056 0.227849144747246 0.225637580931365 0.230015541204566 0.223833200182424 0.223475965581722 0.226671349023129 0.235783037507175 0.232674569445894 0.224795598668891 1 1|0 +|/ 26622872 26623770 26623377.9 26621984 26624051 + gene protein_coding_gene FALSE TRUE AT1G70590.1 F-box family protein similar to suppressor of lin-12-like protein-related / sel-1 protein-related [Arabidopsis thaliana] (TAIR:AT1G18260.1); similar to Sel1-like repeat [Geobacter uraniumreducens Rf4] (GB:ZP_01140406.1); similar to OSIGBa0106G07.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67315.1); similar to Os04g0476000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053077.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Sel1-like; (InterPro:IPR006597) 0.125398905802758 1.40843720594237 0.194924587384425 1 1.69948219433713 13.9583216877167 0.125398905802758 0.0838560798643713
AT3G06380_at 8.54503017169055 8.45029456892063 8.42423026652786 8.37118150353943 8.83436976105993 8.3635138957458 7.890078376085 7.4319362665411 7.37558264347911 7.9027597842873 7.94573471028607 7.70461908855848 7.89765803641823 7.78099341922224 7.26300618569109 7.99970751747164 7.55077617057943 7.19476705693182 8.09790840510995 0.181384355569193 0.182011989646530 0.186997426281430 0.180593496287038 0.180593496287038 0.188032759641866 0.192342601121519 0.197254092223518 0.210917333549184 0.190175350521825 0.183747632631097 0.183714108454271 0.184571970696184 0.196232639092553 0.187420386552973 0.185836026416317 0.216501604732403 0.196431891897889 0.180593496287038 3 3 + 1937376 1937979 1937658.909 1936130 1938227 + gene protein_coding_gene FALSE TRUE AT3G06380.1 ATTLP9/AtTLP9 (TUBBY LIKE PROTEIN 9, TUBBY-LIKE PROTEIN 9); phosphoric diester hydrolase/ protein binding / transcription factor Member of TLP family similar to AtTLP11 (TUBBY LIKE PROTEIN 11), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT5G18680.1); similar to Tubby protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95936.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) 0.147031586547511 1.40818064034359 0.194997966288842 1 1.69917981850620 16.0184500433156 0.147031586547511 0.115232635028508
AT1G11800_at 4.90098004599639 5.10937903672628 5.34324473488669 5.10435915750138 5.20621160321966 5.66778024152722 5.27869619445938 5.32604072216375 4.56972420086023 4.32834110448483 4.67054447889779 4.90516078141177 4.16959690734680 4.25305770619336 4.3206120604253 4.51235047150235 4.67451111955561 4.41330128026123 4.29659076720231 0.221202650046352 0.219077014831854 0.219077014831854 0.227106442822613 0.219077014831854 0.226497243131102 0.237704334483233 0.241838446388356 0.244743116545405 0.223646308514123 0.224841183929285 0.223166247017425 0.231636700852673 0.219077014831854 0.239412720024164 0.219077014831854 0.234325923127378 0.235192305733256 0.222107439466915 1 1 - 3985535 3985980 3985771.909 3985224 3987289 - gene protein_coding_gene FALSE TRUE AT1G11800.1 endonuclease/exonuclease/phosphatase family protein similar to Zinc finger, RanBP2-type; Endonuclease/exonuclease/phosphatase [Medicago truncatula] (GB:ABE89108.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.13414904714872 1.40765426887137 0.195148586024868 1 1.69855956409975 9.68614173783429 0.13414904714872 0.0972474167102107
AT4G10050_at 5.95416629824716 6.18223037380507 6.2581922813887 6.3461834897195 6.53420452882634 6.1114499261941 6.47296874463592 5.91021609625774 5.46472040213179 5.43761533616582 5.70667637129813 5.14924000494984 5.41657815949219 5.46666496287141 5.23271777703516 5.49674782633347 5.61075331360768 6.0229603145749 5.24037814084886 0.168886548356928 0.181521845563786 0.171162501505135 0.171603710985637 0.177566937914983 0.16683920277886 0.172783968623382 0.16989671740422 0.167343267661919 0.170096712796871 0.174754838051509 0.171449039123222 0.169919911395726 0.169222149937752 0.177227025423290 0.169753191421697 0.174523754535090 0.172059349066698 0.175560122753528 4 0|4 /|- 6284892 6285962 6285578.143 6284447 6287290 - gene protein_coding_gene FALSE TRUE AT4G10050.1 hydrolase, alpha/beta fold family protein similar to P0041A24.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01494.1); similar to Os04g0443500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052889.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.157249946591941 1.40670153507948 0.195421465247302 1 1.69743724959078 11.6680499512106 0.157249946591941 0.128942294051494
AT3G09440_at 9.17056786753318 9.48353479383162 9.36220011135131 9.4721977687379 8.47082425499889 8.66808703642818 8.93636254567262 9.59327469111424 9.1100901157107 8.5910082809779 9.72776871029765 9.55781160759794 9.15918572572159 9.37549997059894 9.36303058639018 9.05071150035452 8.84695785356831 8.93550850585696 8.1910396889805 0.141050967948988 0.148326010925828 0.149161670991818 0.150655828573743 0.155291373261758 0.151035711384936 0.154738494012245 0.150999428270411 0.163103474844691 0.141733090991347 0.145412425038323 0.140951251343354 0.142220665241067 0.142160942221843 0.144929450277867 0.143712296584891 0.149641608915535 0.141728176559860 0.154862825984910 3 3 - 2903451 2903976 2903733 2903205 2905730 - gene protein_coding_gene FALSE TRUE AT3G09440.1 heat shock cognate 70 kDa protein 3 (HSC70-3) (HSP70-3) Identical to Heat shock cognate 70 kDa protein 3 (Hsc70.3) (HSC70-3) [Arabidopsis Thaliana] (GB:O65719;GB:Q42345); similar to HSP70 (heat shock protein 70), ATP binding [Arabidopsis thaliana] (TAIR:AT3G12580.1); similar to heat shock cognate 70 kDa protein 2 (HSC70-2) (HSP70-2) [Arabidopsis thaliana] (TAIR:AT5G02490.1); similar to HSC70-1 (heat shock cognate 70 kDa protein 1), ATP binding [Arabidopsis thaliana] (TAIR:AT5G02500.1); similar to 70 kDa heat shock cognate protein 2 [Vigna radiata] (GB:AAS57913.1); similar to Heat shock protein Hsp70 [Medicago truncatula] (GB:ABD32895.1); similar to heat shock cognate protein HSC70 [Brassica napus] (GB:AAB88009.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) 0.159369465333195 1.40549345891075 0.195767955484605 1 1.69601478797195 18.0860171350941 0.159369465333195 0.131850614486715
AT3G48120_at 5.97468882182756 6.12007380780294 6.14723231577668 6.067869577169 6.24782612218115 6.43308859879553 5.70034963225237 5.50683936814602 5.19539522258418 5.28561831142378 4.59701609886473 4.33457085957839 4.58609226768923 4.53906636282359 4.29594916767716 4.83039637164964 5.13375129707238 4.8501621045882 5.30494766622941 0.273898751553940 0.281475720883332 0.282042516421457 0.273898751553940 0.284681178930374 0.278331951910042 0.273984055402312 0.273898751553940 0.273898751553940 0.273898751553940 0.278297831244822 0.273898751553940 0.276809495436002 0.278861920936037 0.285619743409305 0.273898751553940 0.287451781628293 0.27730509379451 0.273898751553940 3 3|0 +|/ 17783640 17785336 17784931.25 17783042 17785724 + gene protein_coding_gene FALSE TRUE AT3G48120.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to At3g48120 [Medicago truncatula] (GB:ABE82374.1) -0.108797627264756 -1.40537578872047 0.195801733158010 1 1.69587627456087 10.9786773469883 -0.108797627264756 0.0545063530508485
AT1G68830_at 10.5196183138744 10.5688470165156 10.7203042775750 10.6415321489957 10.7462129599925 10.5358794085008 11.1167859597048 11.0661596793591 10.8635253234203 10.8192017053265 10.8761185895027 10.6897306160351 10.8931171882596 10.7651713783910 10.5286889892799 10.9129712174250 10.6877757576549 10.7520188498092 10.7535022073495 0.0833671527489114 0.0824464325942974 0.0861519188170128 0.0851220015078112 0.0832257696800244 0.0843340069545151 0.0850387693226486 0.0845889617213645 0.0926359590908341 0.0851160394368379 0.086051586211489 0.0832329250391143 0.0837827137097917 0.0857354981685096 0.0838673698784751 0.0826459775083914 0.0893096511479844 0.0863050911191437 0.0834773996799896 1 0|1 /|- 25876343 25876933 25876707.556 25876108 25879200 - gene protein_coding_gene FALSE TRUE AT1G68830.1 STN7 (STT7 HOMOLOG STN7); kinase/ protein kinase STN7 protein kinase; required for state transitions, phosphorylation of the major antenna complex (LHCII) between PSII and PSI, and light adaptation Identical to Serine/threonine-protein kinase SNT7, chloroplast precursor (EC 2.7.11.1) (Stt7 homolog) (SNT7) [Arabidopsis Thaliana] (GB:Q9S713); similar to STN8 (state transition 8), kinase [Arabidopsis thaliana] (TAIR:AT5G01920.1); similar to Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily (ISS) [Ostreococcus tauri] (GB:CAL56118.1); similar to Os05g0549100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056233.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.102873941167436 -1.40399234983093 0.196199234205039 1 1.69424829738286 21.5270552132281 -0.102873941167436 0.0407438955779894
AT1G58030_at 9.63909528531223 9.83631048837506 10.0951617314735 10.1121325005216 10.4585155613671 10.4098859670017 9.47713796462358 9.65339902158926 9.79102584448244 9.55810791857137 9.06824766850142 8.93793471446715 9.78317796047997 9.4192830917149 8.8102306611202 9.28351096479554 9.64386635481254 9.43187389063073 9.76401756360909 0.101386906811305 0.0961737212946847 0.0980385374079392 0.103373609296971 0.0989552198349106 0.0968015730162455 0.0993048523348393 0.0961737212946847 0.100599946234190 0.0995545483448705 0.103740204147562 0.105466798833543 0.100158853110191 0.104976419901311 0.097258645477628 0.0961737212946847 0.112116915863063 0.103997286822441 0.0972231914282081 1 1|0 -|/ 21467911 21468964 21468545.111 21467671 21472085 - gene protein_coding_gene FALSE TRUE AT1G58030.1 CAT2 (CATIONIC AMINO ACID TRANSPORTER 2); amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g58030) similar to CAT4 (CATIONIC AMINO ACID TRANSPORTER 4), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT3G03720.1); similar to CAT3 (CATIONIC AMINO ACID TRANSPORTER 3), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT5G36940.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABD28534.1); similar to Amino acid permease-associated re (GB:ABE92408.1); similar to amino acid permease family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99422.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.105160068938471 1.40351777415004 0.196335754496041 1 1.69369005345121 19.4610295344678 0.105160068938471 0.0466332200969368
AT1G65440_at 6.64940097210538 6.2558526074562 6.89607436106943 6.08995300930698 5.90698598103841 5.83506554055836 6.03750363798087 5.51694414406641 7.06169183801918 7.32608297127778 6.92243772861558 6.51727558020091 6.56162843833747 6.38903718563352 6.27693747202829 6.84494964290229 7.25994628124225 6.40428446213126 6.94542880607704 0.201224986630809 0.203943971993034 0.200734544276854 0.205872478086603 0.206135264458252 0.203488722159067 0.201042695928022 0.201397859840089 0.205440004040946 0.198755026173365 0.198537280425259 0.20474322651011 0.198537280425259 0.201434701609507 0.204455546884916 0.200487936470608 0.200473840548013 0.209299196998528 0.211797954737871 1 1 - 24310632 24311374 24310920.273 24310330 24318236 - gene protein_coding_gene FALSE TRUE AT1G65440.1|AT1G65440.2 GTB1 (GLOBAL TRANSCRIPTION FACTOR GROUP B1); RNA binding / hydrolase, acting on ester bonds Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. similar to RNA binding / hydrolase, acting on ester bonds [Arabidopsis thaliana] (TAIR:AT1G63210.1); similar to SH2 motif; Alcohol dehydrogenase, zinc-containing; Resolvase, RNase H-like fold; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABD32884.1); similar to Alcohol dehydrogenase, zinc-containing; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE91552.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain Resolvase, RNase H-like fold; (InterPro:IPR006641) -0.198455695156901 -1.40351160379860 0.196337530052315 1 1.69368279599447 13.0275375170366 -0.198455695156901 0.179915828727179
AT3G11910_at 8.5755759929874 8.85126845532278 8.6948806809463 8.73655763812879 9.13738424783977 8.5795925797948 8.601112424448 8.39437224054509 8.28294657489134 8.25980492814945 8.7103330314156 8.66507093952506 8.19287804702949 8.31498996597335 8.48187358213885 8.48243950000191 8.02333912100115 8.52515414183866 8.40381765766444 0.154900719059889 0.163188301342352 0.160381830515708 0.15666222812035 0.163004438576880 0.175413061415035 0.157498611287338 0.16041815179961 0.173078594702994 0.160812104081556 0.165165777164592 0.164099437004529 0.158430288400381 0.159018850522446 0.164582974566836 0.158731529423790 0.176872317097120 0.164825325426086 0.160309540779137 3 3|0 -|/ 3761782 3763155 3762363.6 3761394 3770411 - gene protein_coding_gene FALSE TRUE AT3G11910.1 ubiquitin-specific protease, putative similar to UBP12 (UBIQUITIN-SPECIFIC PROTEASE 12), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT5G06600.1); similar to Ubiquitin carboxyl-terminal hydrolase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94399.1); similar to ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98280.2); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAC83609.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Small acid-soluble spore protein, alpha/beta type; (InterPro:IPR001448); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.145254122949350 1.40199476175733 0.196774433653024 1 1.69189928633472 17.0663594548436 0.145254122949350 0.113692614164625
AT2G20370_at 6.17893876783563 6.39186729513521 5.55689807026652 5.86910449287559 5.50210435090617 5.35198660479824 6.32684926687187 6.7811266120647 5.60205676991441 5.88479136787554 6.59029374663802 7.02599319882875 6.5975458694684 6.34355874200526 6.20819147315166 6.25858408792254 5.55257369337459 6.35944672030672 5.90132234734683 0.218712008572386 0.209841963598921 0.223695111084288 0.218707597312751 0.204087227805681 0.224495611744436 0.210392346948228 0.215621508133388 0.218259433219356 0.215042494866395 0.207659064580839 0.208535701392671 0.207368433387100 0.214517083806241 0.204087227805681 0.208979359343691 0.211192342605393 0.212898499197807 0.211304089582414 2 2 + 8800707 8801224 8800934 8799067 8801482 + gene protein_coding_gene FALSE TRUE AT2G20370.1 MUR3 (MURUS 3); catalytic Encodes a xyloglucan galactosyltransferase located in the membrane of Golgi stacks that is involved in the biosynthesis of fucose. It is also involved in endomembrane organization. It is suggested that it is a dual-function protein that is responsible for actin organization and the synthesis of cell wall materials. Identical to Xyloglucan galactosyltransferase KATAMARI1 (EC 2.4.1.-) (Protein MURUS3) (KAM1) [Arabidopsis Thaliana] (GB:Q7XJ98;GB:Q494P2;GB:Q9SK65); similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT2G29040.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE92010.1); similar to Os03g0144800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048945.1); similar to Xyloglucan galactosyltransferase KATAMARI1 homolog (GB:Q8H038); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.139352746341078 -1.40198347995565 0.196777686365198 1 1.69188602541851 12.0763995675147 -0.139352746341078 0.105508669904981
AT3G18490_at 11.7851612881327 12.1168812387831 12.5308055487598 12.6146744987139 12.3473885231583 12.4309451656811 12.4361269628014 12.7605216566003 11.9565659233013 12.2829617828452 12.0619371669081 12.1161340158622 12.6414768098734 12.0231501948221 11.5304488025005 12.5258944551287 12.4476838766146 12.1076149787580 12.1802256755753 0.0881730121749479 0.0822995644602902 0.0866873680114035 0.0896397009376934 0.0832928319425788 0.0898965926108204 0.0850923459146758 0.083101262874894 0.0893546427379199 0.0827054216556108 0.0846057772744916 0.0842045697414617 0.0822995644602902 0.0924746472071048 0.0840182978183537 0.0840685055337926 0.0871717557110365 0.083533740934249 0.0833500407519157 3 3 - 6349207 6349602 6349381.818 6348761 6350674 - gene protein_coding_gene FALSE TRUE AT3G18490.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT1G25510.1); similar to Os01g0598600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043485.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAT38006.1); similar to Os01g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041979.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.124077695575048 1.40056573089138 0.197186816097552 1 1.69022007029331 24.5386682760617 0.124077695575048 0.0828651357480395
AT1G60200_at 6.10813707671554 5.49601188992542 6.14071899872561 5.789644802556 6.2582679454223 5.82291730961919 5.58973637278583 5.58381525408206 5.53770146143102 5.57744188061525 5.5620626343792 5.6773070738832 5.69705740103845 5.50529277812626 5.55563343381489 6.00465537605825 5.65034429993421 5.61353276011536 5.77925582005549 0.149087416449357 0.146072630555432 0.143325090408816 0.146512755297353 0.152632660223128 0.150468630996595 0.150166955264375 0.15259623771949 0.150861416713245 0.151858022227630 0.143325090408816 0.143325090408816 0.144594638258054 0.146866387139227 0.146718412539725 0.144015090749442 0.15296261024668 0.143968559039140 0.155059069895163 1 1 - 22204562 22208852 22206774.833 22204398 22208953 - gene protein_coding_gene FALSE TRUE AT1G60200.1 splicing factor PWI domain-containing protein / RNA recognition motif (RRM)-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to putative RNA-binding re (GB:BAC98582.1); contains InterPro domain Splicing factor PWI; (InterPro:IPR002483); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.167615724002518 1.39758675635639 0.198048883953686 1 1.68672282303800 11.4935072597470 0.167615724002518 0.143490971963834
AT2G29020_at 9.0903354466495 9.69057416921041 9.26408885920712 9.551965860327 9.78664006412719 9.61169469337389 9.01268972195544 9.07882705616077 9.47449598436186 8.95715732989822 9.39916088103138 9.20701453126494 9.34201846710051 9.20406082468753 9.1655578032777 9.15857191289212 8.43329570371618 9.16086210101699 9.08117621555753 0.146686343784230 0.133512204183129 0.140013367294838 0.134095493806435 0.133643250439682 0.134079600657442 0.129334625173709 0.129334625173709 0.156127690116299 0.133528829412883 0.136297464547932 0.134264046380969 0.129334625173709 0.139633563572315 0.135207985252041 0.130683283006783 0.161916171867389 0.146713365727288 0.131669857226755 2 2|0 +|/ 12477014 12478474 12477856.125 12476801 12478777 + gene protein_coding_gene FALSE TRUE AT2G29020.1 Rab5-interacting family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59410.1); similar to Os05g0110600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054441.1); similar to hypothetical protein [Oryza sativa] (GB:AAK73154.1); contains InterPro domain Rab5-interacting; (InterPro:IPR010742) 0.149182686141158 1.39737169865563 0.198111244489681 1 1.68647052141373 18.5382324612411 0.149182686141158 0.119663229675101
AT1G65540_at 7.10791883116032 7.37123820992103 7.3438281608464 7.08338818553795 7.30061406186846 6.51878108747355 6.96220553563501 6.19876697149285 5.21352144678135 5.57409878139701 5.43366691951228 5.67199415018198 5.64488584140061 5.69739916715436 5.31779944369952 6.05605315396775 5.91198405037051 5.27957516321099 5.26047111732835 0.217934149838382 0.218474210613756 0.23044900078514 0.217946908712371 0.218403603906448 0.219862705794747 0.220527498088498 0.219979449006413 0.233751604836438 0.22240612223323 0.216211580804958 0.218584166378542 0.217453847112657 0.217153138654591 0.222924520654569 0.217030959357794 0.228714213277633 0.219241284690721 0.216169236522080 1 1 - 24366230 24368809 24367519.941 24366045 24369674 - gene protein_coding_gene FALSE TRUE AT1G65540.1 calcium-binding EF hand family protein similar to calcium-binding mitochondrial protein-related [Arabidopsis thaliana] (TAIR:AT3G59820.1); similar to Os02g0608400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047387.1); similar to H0306B06.8 [Oryza sativa (indica cultivar-group)] (GB:CAH67493.1); similar to Ca2+ binding protein cbp1 [Triticum aestivum] (GB:AAW66005.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain LETM1-like; (InterPro:IPR011685); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.214463220615486 1.39707155632228 0.198198305567301 1 1.68611843868598 12.4738593895034 0.214463220615486 0.199671436794996
AT1G10340_at 9.04099998236247 9.470778627902 9.4114829478080 9.35984634657899 8.16082395543404 8.16552400437014 3.51790308786652 3.74083824864633 7.21302421089168 4.78047572546074 3.16748456408138 2.95360670991826 3.38548213666447 3.51629875786055 3.07887124639805 3.7017468398512 3.40979707353866 3.97377642357808 4.45002037197943 0.366459492368065 0.371653563877227 0.369823399866247 0.372073264944125 0.368852072659443 0.367055288921923 0.36440710822047 0.364513010010021 0.372607615322232 0.36440710822047 0.36440710822047 0.369006514750401 0.367164673420534 0.366812049757250 0.369227735495525 0.36440710822047 0.366338922682867 0.366080457504598 0.36440710822047 1 1 - 3390504 3390856 3390693.545 3390324 3392573 - gene protein_coding_gene FALSE TRUE AT1G10340.1|AT1G10340.2 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G24600.3); similar to Ankyrin [Medicago truncatula] (GB:ABE80931.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.124499429864588 1.39545555273750 0.198667623256033 1 1.68422355466918 12.0483028526695 0.124499429864588 0.0842650408477241
AT1G63880_at 9.18068976154313 9.43826022120617 9.20603169010536 9.00477414936676 9.58579067122505 8.5500560372985 9.02940062507614 8.66114924054362 9.21320158918292 9.2726751928398 8.99904761017527 8.8377881414852 8.56271136619993 9.24909382665864 8.57041317285408 9.19819796745832 8.25447905890194 8.5535425828382 9.1550106025646 0.177296812385293 0.174708454167295 0.185278305806828 0.179983585029712 0.175037511037790 0.207233747532057 0.174214077023609 0.181103548116189 0.221993220954065 0.17742555715772 0.180954957045853 0.176046544298989 0.183156248041179 0.175275524541409 0.175933585138105 0.173651991739346 0.196542302244287 0.186624699994101 0.17199935931095 1 1 - 23716207 23716750 23716471.818 23715939 23719787 - gene protein_coding_gene FALSE TRUE AT1G63880.1 disease resistance protein (TIR-NBS-LRR class), putative Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT1G63870.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G63750.3); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G58120.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44392.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593) -0.213090868733835 -1.39492961080940 0.198820574161093 1 1.68360713027652 18.0779132215542 -0.213090868733835 0.198463027987131
AT4G40060_at 7.79541142765739 7.67617674170023 7.67900451931465 7.81415226016651 8.57320417860866 8.23542105347164 8.24946849302582 8.3658037346552 8.35315814532547 8.17608769008795 7.99869218577255 8.0723946600497 8.14991059160178 8.0296834089436 8.22872824468904 8.21255452217092 7.82115362550767 8.15378520920996 8.57512728320027 0.172753633809474 0.169864271995058 0.183762427580331 0.191345906553471 0.170972851639254 0.188047931104807 0.173538162612976 0.164645299363311 0.198229414809582 0.170599481072579 0.179096089080909 0.168746068884555 0.173129711608958 0.180809376818679 0.180769335319608 0.164961438349822 0.184439590159458 0.186619674998726 0.177266793007901 4 0|4 /|- 18571680 18572008 18571862.4 18571353 18573078 - gene protein_coding_gene FALSE TRUE AT4G40060.1 ATHB16 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 13); transcription factor Encodes a homeodomain leucine zipper class I (HD-Zip I) protein. Identical to Homeobox-leucine zipper protein ATHB-16 (Homeodomain transcription factor ATHB-16) (HD-ZIP protein ATHB-16) (ATHB-16) [Arabidopsis Thaliana] (GB:Q940J1;GB:Q9SMQ1;GB:Q9SWZ8); similar to ATHB6 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 6), transcription factor [Arabidopsis thaliana] (TAIR:AT2G22430.1); similar to homeodomain-leucine zipper protein [Brassica napus] (GB:AAR04932.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) -0.115515581623683 -1.39450611033125 0.198943807853226 1 1.68311087181961 16.2743238905072 -0.115515581623683 0.0692463376748014
AT1G04190_at 7.16360850452891 7.13458005273465 7.02549115932484 6.84567581419856 6.46811409499111 6.96017911640641 7.07752780733187 7.3895058572156 5.82073785702528 5.54529447214001 5.63699821731063 6.48471080059539 5.49268902369142 6.01391074308679 6.21675206468998 5.65801404707633 6.08849945485999 5.8707953821154 6.16463278080738 0.195682447980913 0.188903192969958 0.187523172833391 0.192735970886576 0.198965344273508 0.195858982345112 0.191252923668070 0.196766506753903 0.204163012122239 0.192373988843931 0.191244004881839 0.190853118848584 0.192808503231914 0.187523172833391 0.192415713573910 0.189170301794346 0.204818411483291 0.198027759118669 0.192509975455773 1 1|0 -|/ 1106634 1107313 1106976.889 1106427 1108714 - gene protein_coding_gene FALSE TRUE AT1G04190.1 tetratricopeptide repeat (TPR)-containing protein similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G62740.1); similar to stress-inducible protein STI1-like [Trypanosoma cruzi strain CL Brener] (GB:XP_804660.1); similar to Os12g0604800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067220.1); similar to stress-inducible protein STI1-like [Trypanosoma cruzi strain CL Brener] (GB:XP_811823.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.138599664600924 -1.39348208974396 0.199242059280941 1 1.68191129407758 12.8962609275094 -0.138599664600924 0.105639135272870
AT3G18940_at 5.5609633370203 5.34179057813887 5.03155609905745 4.92672861612885 4.98569973536676 5.2207895622061 5.15126787695615 5.10016486869988 3.92529187964425 4.31088403294937 4.32609271585194 4.94663118298453 4.34702859173353 4.81002685813719 4.81470239137447 4.48705804684051 4.83417647672973 4.30974699226624 4.18938149861035 0.215683854949225 0.211808257204596 0.215744484732906 0.212875596669924 0.212719885672845 0.213695257823923 0.21436979814396 0.216075319030344 0.221013200991329 0.217627612848949 0.210202751407369 0.212078445644965 0.213351091755830 0.216590204191592 0.211424337782608 0.210202751407369 0.215144967593408 0.213838753552003 0.210202751407369 3 0|3 /|- 6527096 6527588 6527393 6526964 6529155 - gene protein_coding_gene FALSE TRUE AT3G18940.1 clast3-related similar to Os03g0766900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051385.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF99058.1) 0.110113637287217 1.39333211562907 0.199285772526279 1 1.68173565263384 9.54051277289234 0.110113637287217 0.0591695744769736
AT2G10020_at 5.17523026526449 5.26181618346602 5.45707159604557 5.40607183644017 5.07490425992509 5.05762431643384 5.0231128662636 5.30852235033005 5.82421473654408 5.45499954888527 5.72485719327602 5.44849183474359 5.71344491524671 5.65915492038158 5.73088072475324 5.56157989657898 5.73011303048743 5.71047260249897 5.2294835891185 0.152511936226690 0.157118967115948 0.156438668174268 0.149827713587693 0.151915342197949 0.144515964203165 0.144537671958535 0.158255986666958 0.151697477363684 0.157411455540967 0.144515964203165 0.14823006259814 0.155654218668136 0.14990060966565 0.147444235169271 0.147201119895760 0.162166541742305 0.149710362422331 0.147287083133826 2 2 + 3804319 3804486 3804403.091 3804313 3804513 + gene protein_coding_gene FALSE TRUE AT2G10020.1 unknown protein 0.106861342054996 1.39259422113703 0.199500969015457 1 1.68087163534257 10.8019310499020 0.106861342054996 0.052448773809363
AT1G51200_at 11.5075627128014 11.5270084531581 11.6344183143956 11.6444533734382 11.7568218153800 11.8217251641776 11.3384140110024 11.649360728545 11.2717846355642 11.3275348552282 11.5488107461173 11.2408039316057 11.7005734713694 11.4451010641078 11.1891267702286 11.3492366212119 11.4498714806861 11.3579353931544 11.6093159583321 0.0548937577111892 0.0541823933425616 0.0550611257057484 0.0555888212474434 0.0543058907355713 0.0563306568156148 0.0537396749748805 0.0576861798133406 0.0640230737397506 0.0570260835880684 0.0600712720779498 0.0543879562923093 0.0551191945425347 0.0592767520776298 0.0574968334617403 0.0544261333430597 0.0587212430563168 0.0553917145489052 0.0553194474074904 1 1 + 18989387 18989805 18989624.182 18988102 18990236 + gene protein_coding_gene FALSE TRUE AT1G51200.1|AT1G51200.2 zinc finger (AN1-like) family protein|DNA binding / zinc ion binding Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 2 (AtSAP2) (SAP2) [Arabidopsis Thaliana] (GB:Q8H0X0;GB:Q9SYC3); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G36320.1); similar to unknown [Prunus armeniaca] (GB:AAD38146.1); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.108036071119897 1.39194001875726 0.199691926090657 1 1.68010584340700 23.0165010305381 0.108036071119897 0.0551007639521011
AT1G53390_at 6.7399501389965 6.83814085321922 6.52803144383426 6.4710482965553 7.28828344796943 6.46914984017027 6.1058376843566 6.04931713858975 6.45880028749079 6.32911546440287 6.70381393090664 6.8334701725704 6.5278734330279 6.6806537018622 6.3506625247667 6.52282358599212 5.88865107823155 6.45856247320557 6.46600453129263 0.187652202710453 0.178899659590968 0.181761244339641 0.183221963041985 0.178711850627711 0.192106451290888 0.193658113690802 0.181715310194389 0.193294405934713 0.18531402684257 0.182591494759166 0.178711850627711 0.178711850627711 0.190313330437361 0.194345960257791 0.178711850627711 0.199366706709901 0.196265915352915 0.184653268568466 1 1|0 +|/ 19926591 19927209 19926855.7 19921715 19927475 + gene protein_coding_gene FALSE TRUE AT1G53390.1 ATPase, coupled to transmembrane movement of substances similar to ATNAP12 (Arabidopsis thaliana non-intrinsic ABC protein 12) [Arabidopsis thaliana] (TAIR:AT2G37010.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT5G60740.1); similar to hypothetical protein LOC_Os11g22350 [Oryza sativa (japonica cultivar-group)] (GB:AAX92830.1); similar to Lipocalin; AAA ATPase [Medicago truncatula] (GB:ABE87825.1); similar to ABC transporter family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47708.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.166828619091711 1.39133610188522 0.199868345589129 1 1.67939910502117 13.018113500611 0.166828619091711 0.143443729457703
AT2G46080_at 8.077976337529 8.54169590131035 8.52959339906766 8.83670732781811 8.46734021705146 8.3406726936111 8.31062110318106 8.47274729214904 7.3307422198303 7.72802687160114 7.87299874043824 7.5641637535188 8.27783884712985 7.72090056289502 7.46730283540852 8.1300732205389 8.06115312007394 7.48921340996892 8.17100244517168 0.191007763427734 0.183971473577758 0.192115599986183 0.183971473577758 0.188151025113923 0.194594628620853 0.18485204041524 0.191303866575125 0.197231865294708 0.206222544329361 0.191868823524106 0.189750467605709 0.189996923170145 0.19192200148151 0.197008671227797 0.186873903894661 0.197735495906043 0.207715696416931 0.19602580183129 2 2 - 18955412 18955914 18955660.364 18955190 18957178 - gene protein_coding_gene FALSE TRUE AT2G46080.1 similar to BPS1 (BYPASS 1) [Arabidopsis thaliana] (TAIR:AT1G01550.2); similar to unknown [Solanum tuberosum] (GB:ABB16971.1); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987) 0.136258316611773 1.39111114813268 0.199934094780116 1 1.67913589797031 16.2302756540218 0.136258316611773 0.102626575298302
AT2G39290_at 7.13551164512772 7.12032774379823 6.86233649781004 6.56854975141117 7.27284093949778 7.02148195660481 6.95026464223785 7.61750658352384 7.22032282335793 7.3400923552901 7.40343470671835 7.63601942409409 7.34350796232886 7.44970341027122 7.32010219458982 7.15954121725589 6.82282679079867 7.01639513811865 7.3763940849103 0.207512539941864 0.199717579684073 0.203943505694049 0.228847568387703 0.212545080603486 0.207026458683656 0.202310962100948 0.198686911048107 0.206315781399538 0.198686911048107 0.204173432477419 0.202528169560552 0.198686911048107 0.200802231435109 0.220217729904927 0.204768479389386 0.20882686384636 0.207012042279909 0.201457865120436 2 2 + 16414655 16415856 16415354.909 16414317 16416201 + gene protein_coding_gene FALSE TRUE AT2G39290.1 PGPS1 (PHOSPHATIDYLGLYCEROLPHOSPHATE+SYNTHASE+1); CDP-alcohol phosphatidyltransferase Encodes a phosphatidylglycerolphosphate synthase 2C which is dual-targeted into chloroplasts and mitochondria. Mutant plants have mutant chloroplasts but normal mitochondria. similar to PGPS2 (phosphatidylglycerolphosphate synthase 2), CDP-alcohol phosphatidyltransferase/ CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT3G55030.1); similar to phosphatidylglycerolphosphate synthase [Vigna unguiculata] (GB:ABA55724.1); contains InterPro domain CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; (InterPro:IPR004570); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) -0.158964383169231 -1.39082602336385 0.200017457572977 1 1.67880232437638 14.3592080250221 -0.158964383169231 0.133480501674557
AT1G05890_at 7.92201938061645 7.66488039731534 8.0499633653373 7.82990599967684 8.979360359116 8.34853082707092 7.53192325427865 6.62762152972925 7.46046006811499 7.30165172039398 6.9865683611815 7.04914316950238 6.97768734644236 7.31059095850727 6.4224503351326 7.59011820282755 7.3284944377147 6.96132081022344 7.78842901978169 0.207393325789965 0.20960171042989 0.203174267685108 0.209167848301268 0.201365526346451 0.209767412311479 0.204338097740289 0.203352722286548 0.218653350457840 0.202056024810559 0.211491747374877 0.208006018669120 0.218683163596621 0.202001612521839 0.207459301848567 0.207731874645787 0.207500844822967 0.217597788628754 0.201155212033936 1 1 + 1782685 1784133 1783537.909 1779356 1784521 + gene protein_coding_gene FALSE TRUE AT1G05890.1 zinc finger protein-related similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT1G65430.1); similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT2G31760.1); similar to IBR domain-containing protein / ARIADNE-like protein ARI7 (ARI7) [Arabidopsis thaliana] (TAIR:AT2G31510.1); similar to OJ990528_30.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02043.2); similar to Zinc finger, RING-type; Zinc finger, RanBP2-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85988.1); similar to ARIADNE-like protein [Musa acuminata] (GB:AAR96008.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.213389381954968 1.39050306671066 0.200111917713772 1 1.67842453979142 15.1668474585368 0.213389381954968 0.199595371268626
AT2G06990_at 5.70747665967305 5.45343827403425 5.34035037598308 5.2104749625345 5.45949481268184 5.0432558705797 5.09119441388439 4.89640756272517 4.66003768894584 4.52373139860983 4.32277384209049 4.46608478457212 4.23255009911603 4.77595058808262 4.52088480153411 4.66755440902432 4.75099942103267 4.26825344706736 5.02726417476252 0.178966865377538 0.175379134277694 0.174798866391158 0.17423391319227 0.176194984824226 0.177144565332399 0.17491637268939 0.179957208101840 0.187912325518595 0.183060920970913 0.176045822997426 0.174629518661243 0.174822038019561 0.182013876026409 0.176384391974102 0.174611621076263 0.173080404383725 0.186461657511043 0.178311012163245 2 2|0 +|/ 2899668 2900850 2900021.2 2894937 2901075 + gene protein_coding_gene FALSE TRUE AT2G06990.1 HEN2 (HUA ENHANCER 2); ATP-dependent helicase encodes a putative DExH-box RNA helicase that acts redundantly with HEN1, HUA1, and HUA2 in the specification of floral organ identity in the third whorl. similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G59760.1); similar to unnamed protein product [Mus musculus] (GB:BAC40348.1); similar to superkiller viralicidic activity 2-like 2 [Gallus gallus] (GB:NP_001012962.1); similar to Ribosomal protein L29; AAA ATPase; ATP-requiring DNA helicase RecQ [Medicago truncatula] (GB:ABE79203.1); contains InterPro domain DSH, C-terminal; (InterPro:IPR012961); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.130057442754434 -1.39026248489279 0.200182309492555 1 1.67814314878623 9.89408287226418 -0.130057442754434 0.093609600912725
AT3G26960_at 7.23592028176907 8.0056841404162 6.22057722062343 6.3661344941305 7.14735912228423 7.1452712941302 7.57963846265749 7.72811148602836 6.94515224514778 8.38008865033365 8.96092690133186 9.12229435695817 7.99833548096182 8.34033073074367 8.59575087011557 8.52134058861623 8.73269317319424 8.3188925975823 8.61789856479473 0.206988663288498 0.191687510607025 0.211351167834754 0.209887867266238 0.191687510607025 0.192007148071656 0.191687510607025 0.200007309748034 0.219528725529826 0.197799613887609 0.204223445260697 0.197576299323690 0.197789016200223 0.203592774075107 0.205545762962499 0.19349672158025 0.201636633026679 0.205236945614750 0.194755132272543 3 3|0 -|/ 9946105 9946651 9946377 9945905 9946816 - gene protein_coding_gene FALSE TRUE AT3G26960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G41050.1); similar to Os09g0508200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063620.1); similar to Os12g0472800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066754.1) -0.162364479623216 -1.38992717862678 0.200280452410403 1 1.67775101405169 15.4560205998533 -0.162364479623216 0.137985667185967
AT3G06510_at 10.2785914193392 10.4586697554296 10.8318135903985 10.8143420287017 10.6622814656494 10.2791962809441 11.1490829859271 11.1372995875185 9.9186852357659 10.5577757936871 10.0451230883318 9.93603780843092 10.2312360548896 10.0589541047636 9.77776541113147 10.4314906416235 10.4120816504257 9.97299195284 10.2258178160121 0.116928439519678 0.120035524237655 0.120683627850904 0.121163435710596 0.12031041188399 0.130014617087383 0.121367841572050 0.123039691356238 0.135863453355352 0.118755061311351 0.115842361246009 0.117849638156160 0.121122769172802 0.123203374408714 0.123196588600949 0.115842361246009 0.131104248457988 0.129610169108182 0.123131940482353 3 3|0 +|/ 2018470 2019483 2018959.25 2016443 2019680 + gene protein_coding_gene FALSE TRUE AT3G06510.1 SFR2 (SENSITIVE TO FREEZING 2); hydrolase, hydrolyzing O-glycosyl compounds Encodes a protein with beta-glucosidase activity, mutants show increased sensitivity to freezing similar to glycosyl hydrolase family 1 protein / beta-glucosidase, putative (YLS1) [Arabidopsis thaliana] (TAIR:AT3G60130.3); similar to putative beta-glycosidase [Glycine max] (GB:CAJ87636.1); similar to putative beta-glycosidase [Solanum lycopersicum] (GB:CAJ87637.1); similar to putative beta-glycosidase [Zea mays] (GB:CAJ87638.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.117442727532006 -1.38986553575445 0.200298499582697 1 1.6776789299586 20.87256115801 -0.117442727532006 0.0733446763164703
AT3G61700_at 6.78918878672131 6.39424481534654 6.75462602725244 6.5295132723739 6.99328340475837 6.757577500056 6.78154481520594 6.86218635593205 5.7108754586453 6.13858460696261 5.72775876541724 6.28146102981907 6.00450486278957 6.0997757419387 6.25259082368966 6.43499205304984 6.31047714714962 6.18764909690483 6.029343230299 0.182128181077187 0.182128181077187 0.194250094416874 0.185216792038586 0.189522016859879 0.190042383806157 0.193102281104079 0.183516390090340 0.19835231708704 0.182128181077187 0.187957879008378 0.187693637761925 0.186895410805694 0.195493090946182 0.182128181077187 0.188156586137038 0.185138466627470 0.18915460638318 0.185797926747959 3 3 + 22847836 22848869 22848556.444 22846182 22850064 + gene protein_coding_gene FALSE TRUE AT3G61700.1|AT3G61700.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46420.1); similar to uncharacterized plant-specific domain TIGR01589 family protein [Solanum demissum] (GB:AAU93592.2); contains InterPro domain Conserved hypothetical protein 1589, plant; (InterPro:IPR006476) 0.127379474633950 1.38893465620677 0.200571204085254 1 1.67659060820869 12.7937717665710 0.127379474633950 0.0897079097301412
AT1G72175_at 5.43949652533670 5.65325487910566 5.28341616206077 4.93198163067619 5.33916742445656 5.48085596959811 5.31940702145364 5.05142276365201 5.40210904000984 5.07869501625423 5.18225839880764 4.8697201301736 4.83055588078984 5.34200359733376 5.0369228267916 4.79695537042304 5.15634187245688 5.2993120470303 5.14991245975633 0.202129747568393 0.200896021104623 0.208092112543239 0.202038594275433 0.199900295152210 0.204786473465359 0.194573374349199 0.20348164305297 0.207882849689182 0.194573374349199 0.194573374349199 0.195006866265237 0.197645964554918 0.202764979112232 0.200506067969153 0.200277496584316 0.19826238472152 0.198640952162987 0.194660840780818 1 1|0 +|/ 27161646 27162912 27162231.667 27161537 27163220 + gene protein_coding_gene FALSE TRUE AT1G72175.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G22510.1); similar to hypothetical protein LOC406612 [Danio rerio] (GB:NP_999915.1); similar to Os03g0839000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051839.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.126510036943364 -1.3884619080652 0.200709820261156 1 1.67603806992183 10.4496240991171 -0.126510036943364 0.0884256956780037
AT2G01100_at 7.97697821034285 7.34916274900842 8.05051564020473 7.74631150518184 8.35167393981033 8.07714757763407 7.23311245407467 6.80148046466398 8.02307217792748 7.86873953713143 7.7201981702486 7.74107913281056 7.71922666633275 7.52727284128198 7.75057857162358 7.71029069700485 7.9156516427667 7.63532324138828 8.37340755712333 0.128390200871349 0.135852646965118 0.125931070547099 0.127608796684949 0.129881098325581 0.128105771484290 0.126162438265929 0.139063317699439 0.132807902410658 0.129680712660424 0.134751162967859 0.127326104250497 0.132927287549299 0.134598219657573 0.12848991331721 0.136147175156476 0.133089892078193 0.130700454427801 0.126481745793492 2 2 + 82408 82879 82660.091 81436 83290 + gene protein_coding_gene FALSE TRUE AT2G01100.1|AT2G01100.2|AT2G01100.3 similar to CXIP4 (CAX INTERACTING PROTEIN 4), nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G28910.1); similar to hypothetical protein MtrDRAFT_AC144731g21v1 [Medicago truncatula] (GB:ABE92235.1); similar to Os01g0120700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041870.1) 0.171387446278338 1.38778371948407 0.200908819027936 1 1.67524561372067 15.5999773398616 0.171387446278338 0.149706118634017
AT1G28960_at 5.28107707661182 5.69823235554728 5.37197704755847 5.48929716764399 6.72317217759463 5.71061262024444 5.6809981579837 6.08163297346695 5.01555314800592 5.08728514767568 5.55033554816682 5.2982556031762 5.47187682720867 5.87927579320278 4.9922717866916 5.97277746585738 5.74134861241784 5.27661930184526 5.58668144703015 0.255245028369978 0.243274932444112 0.260591350377756 0.246575552813589 0.256219361979993 0.262047742073539 0.247762427228536 0.257312227830028 0.247410541209769 0.250235058348194 0.247417534685908 0.250964599133895 0.254825501397014 0.252348921236118 0.242355883223516 0.244441759653728 0.250517667276789 0.245218336527749 0.25831058138483 1 1|0 -|/ 10110154 10111270 10110666.8 10109486 10111646 - gene protein_coding_gene FALSE TRUE AT1G28960.1|AT1G28960.2|AT1G28960.3|AT1G28960.4|AT1G28960.5 ATNUDT15 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 15); hydrolase Identical to Nudix hydrolase 15, mitochondrial precursor (EC 3.6.1.-) (AtNUDT15) (NUDT15) [Arabidopsis Thaliana] (GB:Q8GYB1;GB:Q67YK3;GB:Q9SHQ7); similar to ATNUDT22 (Arabidopsis thaliana Nudix hydrolase homolog 22), hydrolase [Arabidopsis thaliana] (TAIR:AT2G33980.1); similar to Os08g0375900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061674.1); similar to Os05g0209400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054910.1); similar to mutT/nudix family protein [Pseudomonas syringae pv. phaseolicola 1448A] (GB:YP_273603.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.215642407720757 1.38710943490608 0.201106841355433 1 1.67445794919871 11.1309674628604 0.215642407720757 0.202818858873156
AT3G51780_at 7.22358574593543 7.31956448209563 7.36356104783116 7.30402218944197 7.38003231572975 7.22731469172089 7.56757785539328 7.21123536592148 6.55513810739627 6.76488425843291 7.02392218595541 6.98743539346084 7.21041305860158 6.99265184092551 6.56338912439537 7.12845556977765 7.27948413531023 6.8557779342515 6.96928316951097 0.157734856961331 0.15475644852417 0.158259779109509 0.173494320436374 0.156789209012239 0.156951753385205 0.155638517086019 0.158313036354600 0.159631804694379 0.163774417508709 0.154367653719573 0.152474628554037 0.160813090570136 0.159442053960110 0.160816266766697 0.156960916406465 0.15801637394681 0.16648479208477 0.165532350848327 3 3 - 19218028 19218647 19218338.818 19217745 19219287 - gene protein_coding_gene FALSE TRUE AT3G51780.1 ATBAG4 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 4); protein binding A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. BD domain of ATBAG4 had highest similarity to human DB domain of BAG protein. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. similar to ATBAG3 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G07220.1); similar to BCL-2 binding anthanogene-1 [Hordeum vulgare subsp. vulgare] (GB:CAI39214.1); similar to Os01g0831200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044700.1); contains InterPro domain Apoptosis regulator Bcl-2 protein, BAG; (InterPro:IPR003103); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.11516550453293 1.38604253201164 0.201420511605967 1 1.67321211688688 14.2087582119828 0.11516550453293 0.0698805437816337
AT2G18030_at 4.7022154064518 5.05179727275653 4.35753354222305 4.77591541519275 4.79996496839735 4.60486602669463 4.69763864804991 5.60761086973453 5.62637102760931 5.00017711078892 5.53178272604192 5.33775652813753 5.15625668851393 5.69969137853845 4.92290357945599 5.04695527134845 4.55374699611384 5.33616027360383 5.03700066666972 0.220668771897743 0.221722771755568 0.226840565959555 0.212535559384492 0.221423082631215 0.217687298963785 0.223219782672266 0.225393103718235 0.223758944992589 0.212535559384492 0.217408434565703 0.224713937467051 0.216175681794767 0.221178944505092 0.231225870094882 0.214211674636653 0.227980756619233 0.223360238058514 0.212845252699031 2 2|0 +|/ 7847454 7848549 7848002.2 7847149 7848744 + gene protein_coding_gene FALSE TRUE AT2G18030.1|AT2G18030.2 peptide methionine sulfoxide reductase family protein similar to PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1), protein-methionine-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT5G61640.1); similar to Methionine sulfoxide reductase A [Medicago truncatula] (GB:ABE81080.1); contains InterPro domain Methionine sulfoxide reductase A; (InterPro:IPR002569) -0.201635907962328 -1.38580954298727 0.201489066778888 1 1.67294012993173 10.0343625763085 -0.201635907962328 0.186655633599865
AT1G47200_at 7.85299610114452 8.36957273463488 7.54486368927972 7.89359229790592 7.94276741056589 8.1351600781987 8.42507347448833 8.46964417380015 7.14384235854624 7.2984651648195 7.86497202742566 8.2111818527647 7.97468556721994 7.82118408301141 8.1709849670179 7.67270044806012 7.81211608170694 7.79180550422455 7.24346759910892 0.176103479792751 0.169560744937456 0.173523453111351 0.171756437287233 0.171209423196697 0.171183301921208 0.172315408188967 0.174506870378097 0.191486534766951 0.182571105630423 0.185218740881334 0.169560744937456 0.170313527632075 0.181713247888703 0.178013999314057 0.180452898551536 0.171475257690177 0.175567576876179 0.175009946475155 1 1 - 17300809 17301123 17300937.091 17300471 17301257 - gene protein_coding_gene FALSE TRUE AT1G47200.1 WPP2 (WPP domain protein 2) similar to WPP1 (WPP domain protein 1) [Arabidopsis thaliana] (TAIR:AT5G43070.1); similar to MFP1 attachment factor 1 [Lycopersicon esculentum] (GB:AAF63657.1) 0.143068178453969 1.38472064033172 0.201809735145433 1 1.67166932943489 15.6509815069625 0.143068178453969 0.113144476744085
AT4G21960_at 13.5112028765709 13.5683291612008 13.2190056765917 13.1942657259779 13.4581223067015 13.4355865057115 13.707935175731 13.7364580460433 13.1858889630777 13.6535995425164 13.9042350320740 13.9655053175445 14.3280860825942 13.9877208209849 13.9172986627184 13.7848519685186 14.0137842007072 14.2047732095845 13.7209508096868 0.0512002520176027 0.0493766395905835 0.0496088411973056 0.0504976734537905 0.0496073551805367 0.0504002663481424 0.0517376546215539 0.0510335023949536 0.0572217539454103 0.0502011509139487 0.0515445596843849 0.0506177172336267 0.0497381970924301 0.0527062417285384 0.0517247964993311 0.0491016702385575 0.0523429695618056 0.0518650797944529 0.0489782503327114 4 4|0 -|/ 11646683 11647582 11646988.2 11646186 11648474 - gene protein_coding_gene FALSE TRUE AT4G21960.1 PRXR1 (peroxidase 42); peroxidase Encodes AT4g21960 (AT4g21960/T8O5_170). Identical to Peroxidase 42 precursor (EC 1.11.1.7) (Atperox P42) (PRXR1) (ATP1a/ATP1b) (PER42) [Arabidopsis Thaliana] (GB:Q9SB81;GB:Q41937;GB:Q42579;GB:Q43730); similar to peroxidase 21 (PER21) (P21) (PRXR5) [Arabidopsis thaliana] (TAIR:AT2G37130.1); similar to peroxidase (GB:AAA99868.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) 0.0944496061364752 1.38472017647971 0.201809871838015 1 1.67166878822559 27.2455773594499 0.0944496061364752 0.0124754217848630
AT1G11840_at 9.80381747750789 9.97784650847794 10.0189067645743 9.85596917894427 10.1044255227758 9.77673305477317 10.7883438934340 10.8869466688966 9.60277879143303 10.4773339200073 10.5366120618785 10.6054313044622 10.6168888321170 10.6077006603069 10.8599404096888 10.5018289525061 10.5017150361114 10.8289065062217 9.84374535392003 0.098369628987302 0.0996779938020093 0.103304015305690 0.107015730453541 0.0999757557483923 0.111088224955261 0.106366991158703 0.102819960861227 0.111916877816468 0.0996667093828561 0.102510946258147 0.0972600461202722 0.101325797655632 0.100882568326521 0.100718889444870 0.0962505901211135 0.101846399990956 0.099232326888269 0.106709575887522 1 1|0 +|/ 3996480 3997358 3996914 3995171 3997852 + gene protein_coding_gene FALSE TRUE AT1G11840.1|AT1G11840.2|AT1G11840.3|AT1G11840.4|AT1G11840.5 ATGLX1 (GLYOXALASE I HOMOLOG); lactoylglutathione lyase Encodes a glyoxalase I homolog ATGLX1. similar to lactoylglutathione lyase, putative / glyoxalase I, putative [Arabidopsis thaliana] (TAIR:AT1G67280.1); similar to Putative lactoylglutathione lyase (Methylglyoxalase) (Aldoketomutase) (Glyoxalase I) (Glx I) (Ketone-aldehyde mutase) (S-D-lactoylglutathione methylglyoxal lyase) (GB:Q39366); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.116264304239613 1.38380167383100 0.20208070239291 1 1.67059731906987 20.4551222964389 0.116264304239613 0.0721742979536266
AT3G10800_at 7.26389169575661 7.51837491508131 7.4923404762668 7.36272383166693 7.32282899308862 7.41841801499365 6.46720899358541 6.9927690301531 5.76085868254138 5.92885486138082 6.06220570069492 5.56343260511894 5.91813025253942 6.08101121449526 5.97225379146632 6.11701959286310 5.61169353908098 5.64366248911999 6.11764500780623 0.225482024336468 0.224255458518861 0.223834338448066 0.231790928817165 0.221357595757793 0.230548286847049 0.218925822851299 0.224798562461920 0.230056192617484 0.232838664785206 0.218925822851299 0.226819998460934 0.220201943419076 0.246720727681116 0.225296134376945 0.218925822851299 0.246070208996005 0.230412343555263 0.229458609938834 3 3 + 3380762 3381376 3381095 3379259 3381626 + gene protein_coding_gene FALSE TRUE AT3G10800.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G40950.1); similar to putative bZIP transcription factor [Oryza sativa (japonica cultivar-group)] (GB:AAT85257.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.136953317311393 1.38264407178252 0.202422481125691 1 1.66924753966045 13.1333006598650 0.136953317311393 0.104824967718281
AT2G35780_at 8.29461351846629 8.62881202493602 8.21068247491436 8.1982069509901 8.51591508744163 8.2534767307064 8.37559456323976 8.3173829524162 8.21940137686408 8.65606998473631 8.96363319708072 9.18590656059756 8.58388380753362 8.72286366551225 9.25172024611215 8.6915256550209 8.51347083995019 8.60646453644834 8.53676653884519 0.154809533612643 0.152296106357414 0.140813528907646 0.150512109389354 0.157066922926972 0.161978812930102 0.144654919562301 0.145080221958491 0.167828270427042 0.153640584597510 0.150056140823882 0.149499314299433 0.146964951018378 0.148845409890411 0.153477817332003 0.141278999548728 0.165171450003624 0.159366447918006 0.158555670890353 2 0|2 /|- 15044818 15045510 15045127.8 15044741 15047206 - gene protein_coding_gene FALSE TRUE AT2G35780.1 SCPL26 (serine carboxypeptidase-like 26); serine carboxypeptidase similar to SCPL27 (serine carboxypeptidase-like 27), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G07990.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08188.1); similar to Os01g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042076.1); similar to Os01g0833500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044713.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.11732857148267 1.38234302707963 0.202511445467802 1 1.6688966288071 16.9921753030624 0.11732857148267 0.074253713714645
AT1G65290_at 9.23416301584205 9.64675135271444 9.16504838694942 9.37281637764902 9.23972490101952 9.184898034876 9.71198208524427 9.8190976406396 9.30673799352305 9.22605416734135 9.46406212069795 9.70945560233632 9.18130343380318 9.37073138635803 9.63556017634775 9.2288322191174 9.16396988067703 9.34870070446275 9.27699271127854 0.0999598068308664 0.0921539116651725 0.101598503929938 0.09492123517795 0.0920280338701546 0.0941271588568778 0.0924944116486804 0.0958510249855646 0.107354419436281 0.0935511742188149 0.0920253148993855 0.0920253148993855 0.0929407063793353 0.0954173775168883 0.0972418465643344 0.0920253148993855 0.102304792920003 0.100980209860252 0.0969546167873108 1 1 - 24252751 24254002 24253513.273 24252492 24254080 - gene protein_coding_gene FALSE TRUE AT1G65290.1 acyl carrier family protein / ACP family protein similar to mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1), acyl carrier [Arabidopsis thaliana] (TAIR:AT2G44620.1); similar to Acyl carrier protein (ACP) [Medicago truncatula] (GB:ABE78017.1); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) -0.122238974362928 -1.3815809064177 0.202736817307209 1 1.66800847317841 18.7506878399615 -0.122238974362928 0.0826100688274625
AT2G47600_at 8.25505189309837 8.3297637546793 8.15118838605633 8.02566847408323 8.29516464111416 8.2583936327146 8.54113002001509 8.63563610073007 7.89395010206123 7.93191446590513 8.15179527662898 7.93877356894234 8.17154627171567 8.05601717740227 8.18028854863498 7.89401978200946 7.82218346532056 8.25305618123639 8.16367147872297 0.161596760502698 0.15365317072467 0.150210834348667 0.157942283587388 0.151070338684133 0.167509387697007 0.157541467176158 0.161887843801438 0.163510117820146 0.159469601560752 0.158372940140044 0.159162359801395 0.153432169157061 0.163699565653783 0.155266019436223 0.16355999522608 0.17051361065697 0.170687113311318 0.160749096133439 2 2|0 -|/ 19531626 19532315 19531939.3 19531230 19534483 - gene protein_coding_gene FALSE TRUE AT2G47600.1 ATMHX (MAGNESIUM/PROTON EXCHANGER); cation:cation antiporter Encodes a magnesium/proton exchanger, member of putative Na+/Ca2+ antiporter gene family similar to Os11g0660000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068402.1); similar to Sodium/calcium exchanger membrane re (GB:ABE84975.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) -0.0979218201077012 -1.38079052759794 0.202970774232109 1 1.66708769764339 16.3389856375861 -0.0979218201077012 0.0307729036698286
AT2G11910_at 7.99000695321746 8.26058075552994 7.9243171532313 7.8578023508084 8.25038670644758 8.25737373655764 8.149365817709 8.37439487265653 7.15540865794095 7.74375099462062 7.43723937300824 7.56169465011357 7.83919400287087 7.46384268070142 7.47301857772698 7.45342381095667 7.66121939266729 7.36582864591571 7.99647958221018 0.161577323955411 0.161090433124459 0.168589482085893 0.166893308757433 0.162951426099824 0.155045888726558 0.168120186731180 0.171924623760305 0.222812111185709 0.166499995848332 0.176021398878231 0.168086346875327 0.158906342336642 0.174862949503412 0.173289782574965 0.161035500004361 0.172201193785568 0.181895967332634 0.155045888726558 2 2|0 -|/ 4813086 4814217 4813819.25 4812767 4814401 - gene protein_coding_gene FALSE TRUE AT2G11910.1|AT2G11910.2 similar to zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT5G63740.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93307.1) -0.110532108097913 -1.38074400681991 0.202984551923284 1 1.66703351175294 15.7149347366042 -0.110532108097913 0.0619915757758525
AT3G22890_at 12.0502805661406 12.3543442550651 12.3506310691037 12.3099173525889 12.1678976093209 12.0352412385459 12.5452442686560 12.6623446960338 12.1201842966986 12.6162285083826 12.3597573791722 12.0998585253732 12.3455915368453 12.5373959860232 11.8204036691550 12.3359865995410 12.0626159746169 12.4896709551668 12.1321070352837 0.075510199285884 0.0689022731430798 0.0758212827873174 0.0718588174751334 0.0708704411626547 0.0763103352075412 0.0745760053150977 0.0704554843625859 0.0759334907826653 0.0707392090398796 0.071034906640509 0.0712342806465498 0.0689022731430798 0.070772642212092 0.0743227399319848 0.0689022731430798 0.080580318740211 0.0722023089926613 0.069172398359696 3 3|0 +|/ 8113936 8114690 8114305.2 8112730 8114997 + gene protein_coding_gene FALSE TRUE AT3G22890.1 APS1 (ATP sulfurylase 3) encodes ATP sulfurylase, the first enzyme in the sulfate assimilation pathway of Arabidopsis. similar to APS3 (ATP sulfurylase 2), sulfate adenylyltransferase (ATP) [Arabidopsis thaliana] (TAIR:AT4G14680.1); similar to APS4 [Arabidopsis thaliana] (TAIR:AT5G43780.1); similar to APS2 (ATP SULFURYLASE PRECURSOR) [Arabidopsis thaliana] (TAIR:AT1G19920.1); similar to ATP sulphurylase [Brassica napus] (GB:AAB53100.1); similar to ATP sulfurylase [Brassica juncea] (GB:CAA11417.1); similar to ATP sulfurylase (GB:AAA21570.1); contains InterPro domain ATP-sulfurylase; (InterPro:IPR002650) -0.110114082151124 -1.37998062314611 0.203210752551936 1 1.66614450434894 24.5824459777777 -0.110114082151124 0.0612873907766301
AT1G50120_at 5.90362616701307 6.85274357398464 5.84477013206153 6.3870360826726 6.68519534615489 5.75846065316246 6.62599207812391 6.80707935349785 6.2957465112694 6.65312409833441 6.50307720611016 6.64481589012709 6.27079095118516 6.63874412972812 6.50479243147509 6.39745123501546 6.36853899983876 6.10224556128395 6.73629958100055 0.211433620398909 0.206029086977722 0.213803714857701 0.212508934964146 0.217598910961266 0.212309168543341 0.221667331347903 0.207108481781856 0.231977764116847 0.209032641206082 0.221830994341098 0.209351231192743 0.210668966699336 0.217876082066364 0.212205059006331 0.208929517054121 0.213281360305137 0.210162523021080 0.214602181712017 1 1|0 +|/ 18568611 18569659 18569229.889 18565497 18569840 + gene protein_coding_gene FALSE TRUE AT1G50120.1 similar to Os06g0618600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058085.1); similar to E set domain-containing protein [Dictyostelium discoideum AX4] (GB:XP_642605.1); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026) -0.255705542957323 -1.37994812426629 0.203220387223179 1 1.66610666397149 12.8533781470657 -0.255705542957323 0.249973014522354
AT3G18780_at 11.4569539140845 11.6185033507637 11.0935128768224 11.4272906063482 11.5659756523018 11.4741533437494 11.2899572016000 11.6984896173212 12.3424687650999 11.7289059827070 12.2111944398651 11.8134931610235 11.9998639093210 12.0252063803795 11.7335230545168 11.8292667929282 11.6015318301423 11.7516077717196 11.9501915178334 0.0685614426012616 0.0673882509310339 0.0785143558655595 0.0662888474423275 0.069524364478468 0.0770430170999585 0.0684020942386206 0.067843803843171 0.0735460008788585 0.0708259150396913 0.068377160742826 0.067681529317787 0.0663289817478526 0.0685005356073008 0.0681575631909145 0.0662888474423275 0.076211188426298 0.0676868664817204 0.068516566130014 3 3 + 6476153 6476800 6476510.909 6474848 6477210 + gene protein_coding_gene FALSE TRUE AT3G18780.1|AT3G18780.2 ACT2 (ACTIN 2); structural constituent of cytoskeleton Encodes an actin that is constitutively expressed in vegetative structures but not pollen. Identical to Actin-2 (ACT2) [Arabidopsis Thaliana] (GB:Q96292;GB:Q42056); Identical to Actin-8 (ACT8) [Arabidopsis Thaliana] (GB:Q96293;GB:Q41933;GB:Q9M9C2); similar to ACT11 (ACTIN-11), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G12110.1); similar to ACT8 (ACTIN 8), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT1G49240.1); similar to ACT7 (actin 7) [Arabidopsis thaliana] (TAIR:AT5G09810.1); similar to actin [Striga asiatica] (GB:AAC49651.1); similar to actin 8 (GB:AAC49523.1); similar to actin [Brassica oleracea] (GB:AAD02328.1); contains InterPro domain Actin; (InterPro:IPR004001); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) -0.131110369431646 -1.37896409528191 0.203512300775707 1 1.66496115493308 23.3920544067241 -0.131110369431646 0.0967924707467188
AT1G04340_at 6.28516813788267 6.73787600443991 6.54406203732699 6.91983321807986 6.67229970377664 6.84345757087563 6.5496775048041 6.91855322908736 6.48286983269203 5.29949333602795 6.07788410120454 5.79088645792972 6.19893317959361 6.0483497415643 6.22131650346425 5.93559376950761 6.11427004265685 5.71231828822657 5.71975376427399 0.196517694720937 0.192867007570451 0.196103691728965 0.193951362992778 0.199841915898806 0.197759495525700 0.192973852864062 0.198469463699412 0.207257762499033 0.197728339264151 0.188978287877602 0.190929592691703 0.193208907218042 0.200677691343437 0.199145854452792 0.201277756993855 0.200835917903319 0.200656148984726 0.199378198331932 1 1|0 -|/ 1163349 1164046 1163772.1 1163096 1164850 - gene protein_coding_gene FALSE TRUE AT1G04340.1 lesion inducing protein-related similar to lesion inducing protein-related [Arabidopsis thaliana] (TAIR:AT5G43460.1); similar to putative lesion-inducing protein [Capsicum annuum] (GB:AAR83861.1); contains InterPro domain Surfeit locus 4-related; (InterPro:IPR011592); contains InterPro domain HR-like lesion-inducer; (InterPro:IPR008637) 0.150249723157522 1.3788696412522 0.203540339712782 1 1.66485122682837 12.6071074198757 0.150249723157522 0.123768897377308
AT2G20180_at 5.69537452294446 5.95000869839929 5.6679076583345 6.02883831616872 7.28577579239422 7.07800916373007 6.73718853658925 6.65964650930749 6.37779503843 6.89926016399769 6.13618464215766 5.96780518059254 6.20829584106018 5.86587997832043 6.21528096423451 6.64616168040175 6.63519218882491 6.1755973965357 6.92320452573428 0.220459587813814 0.216347297180354 0.219984733526519 0.213365762847658 0.225699060040029 0.235684395770321 0.219992466076830 0.226942317182135 0.213690314496382 0.215941250735727 0.213607075436967 0.21103630942616 0.218212032809360 0.223024601307559 0.221624218748755 0.21103630942616 0.233343279783443 0.218341810634851 0.217359458363434 2 2 - 8711824 8712366 8711963.091 8711105 8713973 - gene protein_coding_gene FALSE TRUE AT2G20180.1|AT2G20180.2 PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5); transcription factor Member of the basic helix-loop-helix (bHLH) family of transcription factors. PIF1 has transcriptional activation activity in the dark. Light reduces this activity in a phy-dependent manner. Negative regulator of seedling de-etiolation by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. PIF1 is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis.| similar to transcription regulator [Arabidopsis thaliana] (TAIR:AT4G28811.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97814.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.123771004762304 -1.37843899877683 0.203668219346076 1 1.66435009125868 12.8702034714351 -0.123771004762304 0.0855333492486857
AT4G36810_at 7.90523035285165 8.31008066392856 8.07492726031856 8.13424433745835 8.27323009337958 8.10052511625394 8.90071101506184 9.09061864604527 8.70675998806122 8.48905933801635 8.74297749512682 8.91481811321057 8.58388172874889 8.85437839650302 8.52532146862808 8.71070500881638 8.32234548921318 8.59366731975184 8.28946260821734 0.152721498431804 0.157137001032062 0.165570922366862 0.161197234810159 0.154977976191982 0.153019493915529 0.162917173503682 0.166841731911199 0.161114811544287 0.151303370064335 0.152225172480412 0.151946676727437 0.152766993970399 0.164452854975694 0.17296997993351 0.148158611729468 0.173694131973682 0.15885504365705 0.156216949620809 4 4 + 17344039 17344541 17344218.182 17343378 17344869 + gene protein_coding_gene FALSE TRUE AT4G36810.1 GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase Encodes a protein with geranylgeranyl pyrophosphate synthase activity involved in isoprenoid biosynthesis. The enzyme appears to be targeted to the chloroplast in epidermal cells and guard cells of leaves, and in etioplasts in roots. Identical to Geranylgeranyl pyrophosphate synthetase 1, chloroplast precursor (GGPP synthetase 1) (GGPS1) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10); Farnesyltranstransferase (EC 2.5.1.29)] (GGPS1) [Arabidopsis Thaliana] (GB:P34802;GB:O23201); similar to geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative [Arabidopsis thaliana] (TAIR:AT2G18620.1); similar to geranylgeranyl pyrophosphate synthase (GB:AAA32797.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.122505284108839 -1.37778277855845 0.203863217731764 1 1.66358663411836 16.9242488634613 -0.122505284108839 0.0835899183026135
AT1G70230_at 7.023395908211 7.31376267507074 7.42624709484168 7.91804364645144 7.87712021592972 7.41178212443994 8.90637141118836 9.09170402774878 8.84264405393362 8.40366218053552 9.02451071888347 8.36086347647237 8.79986608541391 8.83079654934848 8.43488533025147 8.64695414477647 8.47933080362826 8.37503258787204 8.26950012151253 0.181560505897933 0.177341786612731 0.183772224908336 0.179341114823129 0.177469192223456 0.186483004617538 0.173876702967464 0.174891379739291 0.183066731611340 0.170695756509046 0.174943479041249 0.173555129185458 0.174222714957248 0.177356124635042 0.174787000574806 0.175435001659160 0.178113038898175 0.182127821700297 0.173528252182526 1 1 + 26454845 26455327 26455095.273 26453908 26455608 + gene protein_coding_gene FALSE TRUE AT1G70230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G01430.1); similar to Protein of unknown function DUF231, plant [Medicago truncatula] (GB:ABE83215.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) -0.155874529192717 -1.37729357969642 0.204008689810352 1 1.66301763508823 16.4332027616892 -0.155874529192717 0.131460554273496
AT4G27650_at 7.88807684923224 8.06176919431573 8.01211254474407 7.86447713651511 8.22435161574046 7.89984857648725 8.22407382137634 8.1164830887291 7.8846126174185 8.02497519907326 7.84378370082039 7.9534032189113 7.82754194592158 7.66363667980515 7.74590501825046 8.16141836336563 7.50348491429948 7.52681724758708 7.89853578860696 0.139616177735711 0.135613628133958 0.140236360603885 0.143962709956651 0.133794681363616 0.13894373480252 0.135647549640783 0.133794681363616 0.140873349357305 0.143983598127570 0.143453002352005 0.139883682880041 0.139673183503444 0.145103009212441 0.147423933549897 0.133794681363616 0.151111898079892 0.139685315538876 0.14135121044252 4 0|4 /|- 13803497 13805007 13804084.286 13803303 13807941 - gene protein_coding_gene FALSE TRUE AT4G27650.1 PEL1 (PELOTA); translation release factor Encodes Arabidopsis homolog of Drosophila pelota protein. similar to eukaryotic release factor 1 family protein / eRF1 family protein [Arabidopsis thaliana] (TAIR:AT3G58390.1); similar to putative pelota [Oryza sativa (japonica cultivar-group)] (GB:AAL87190.1); similar to OSJNBa0015K02.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE02893.2); similar to OSIGBa0132E09-OSIGBa0108L24.21 [Oryza sativa (indica cultivar-group)] (GB:CAH67807.1); contains InterPro domain Probable translation factor pelota; (InterPro:IPR004405); contains InterPro domain eRF1 domain 2; (InterPro:IPR005141); contains InterPro domain eRF1 domain 3; (InterPro:IPR005142); contains InterPro domain eRF1 domain 1; (InterPro:IPR005140) -0.115097792810534 -1.3770254555084 0.204088459328477 1 1.66270582512720 15.8935441473024 -0.115097792810534 0.0711090926943828
AT4G02560_at 5.94582762484895 5.88601281035552 5.92918736980766 6.12071205794704 6.71598290854236 6.08293336375248 6.3831253371341 5.96519647961515 6.099153083509 6.25084833859434 5.67222394846991 6.05443598509118 5.40750518367876 5.7931700579649 5.49339493716879 5.80583057796375 5.63361983489821 5.64220315623028 6.16976693098939 0.227586685535068 0.220961776917108 0.232215186839894 0.216634011757039 0.221159295559901 0.233255095589165 0.225471181427148 0.223531884340711 0.239979797531703 0.223828172948862 0.238022942442431 0.220393257042744 0.217382916575447 0.222058672143021 0.228408151668222 0.231301640733263 0.225401071624595 0.222700880499596 0.221332892837770 4 4 - 1123679 1124487 1124003 1123490 1128421 - gene protein_coding_gene FALSE TRUE AT4G02560.1 LD (LUMINIDEPENDENS); transcription factor Encodes a nuclear localized protein with similarity to transcriptional regulators. Recessive mutants are late flowering. Expression of LFY is reduced in LD mutants. Identical to Homeobox protein LUMINIDEPENDENS (LD) [Arabidopsis Thaliana] (GB:Q38796;GB:O22771;GB:Q9C5Z9); similar to Homeobox protein LUMINIDEPENDENS (GB:Q38796); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.159147397745202 -1.3769243846103 0.204118535869321 1 1.66258829615104 12.0591492829408 -0.159147397745202 0.135787358699504
AT3G02700_at 7.0843777650715 7.5393941933599 6.42082811928804 6.58308278214888 7.93315542795237 7.48939873503732 6.3414718528392 6.20751052854362 6.9412067982119 6.67248489844936 6.82865551816819 6.92085169055507 6.97485828363223 7.01235533626618 6.58252454862832 7.0695502789673 6.15328158133471 7.03007534339392 6.92629834178513 0.170124338407406 0.165476277070348 0.168179751636372 0.162626577107929 0.171185382576424 0.161142293271203 0.165094656508202 0.158714956792418 0.157753257153607 0.164110633946391 0.160208455759996 0.158004426221116 0.156967122431896 0.159201307129353 0.158210397184710 0.15895709008315 0.171052399834547 0.160757004820024 0.156967122431896 3 3 - 581770 582261 582045.727 581548 582956 - gene protein_coding_gene FALSE TRUE AT3G02700.1 NC domain-containing protein similar to NC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G16360.1); similar to Os05g0310600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055158.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU90086.1); contains InterPro domain NC; (InterPro:IPR007053) 0.144141703811271 1.37614985870804 0.204349145115567 1 1.66168782182322 13.7839936349136 0.144141703811271 0.115860344860327
ATCG01110_at 8.41395215680909 9.15246400357407 8.92612291745622 9.26365889527878 9.55356860656386 7.73794637085525 9.94163000583088 9.6474408817783 9.58721420831455 9.43918527626087 10.6074350187710 10.9012461815484 10.8056354777909 10.7132068364610 10.3618019582486 10.8991299223075 10.0269641653872 10.3475910388905 9.40735989780628 0.155540377143218 0.143344935987410 0.150911992988958 0.148414385249943 0.142264022085713 0.162472263773402 0.149324678866249 0.146000780300201 0.149057850857071 0.143133009209836 0.142749712309973 0.146271139322291 0.139933943414376 0.142057478232377 0.146459334974509 0.141144986139003 0.155020039889297 0.142743880700647 0.142564544801741 C C - 122035 122520 122284.364 122011 123192 - gene protein_coding_gene FALSE TRUE ATCG01110.1 Encodes the 49KDa plastid NAD(P)H dehydrogenase subunit H protein. Its transcription is regulated by an ndhF-specific plastid sigma factor, SIG4. Identical to NAD(P)H-quinone oxidoreductase chain H, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain H) (NADH-plastoquinone oxidoreductase 49 kDa subunit) (ndhH) [Arabidopsis Thaliana] (GB:P56753); similar to NADH dehydrogenase subunit VII [Cucumis sativus] (GB:YP_247656.1); similar to NADH-plastoquinone oxidoreductase subunit 7 [Gossypium hirsutum] (GB:YP_538984.1); similar to NADH dehydrogenase 49kD subunit [Gossypium barbadense] (GB:BAF41303.1); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 49kDa; (InterPro:IPR001135) 0.343204483169431 1.37577994401669 0.204459363654433 1 1.66125786203649 19.1099960392947 0.343204483169431 0.347937220143678
AT2G28310_at 6.55525852912556 6.58197609778952 6.19627080644672 6.37583267115455 6.60410015770509 6.34839807780724 6.68454492817796 7.26433517576968 6.1344333456207 6.79344028731121 6.41303053784285 7.06405142913446 7.06433731106636 6.97868113066073 6.21646132125474 6.79037387711366 6.31129230490104 6.5600149480689 6.78199749345236 0.183626375633420 0.183600520658149 0.187312647031892 0.188953499010772 0.192308597801396 0.185679967255443 0.184790505428277 0.192238212222417 0.187830631159623 0.186768816787463 0.189974262531032 0.184966764231041 0.186128145066455 0.198924695279653 0.198015307432922 0.182420489121598 0.187132935431165 0.186667703967566 0.181730996695694 2 2|0 +|/ 12093797 12094910 12094287.1 12092455 12095137 + gene protein_coding_gene FALSE TRUE AT2G28310.1|AT2G28310.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G08040.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.142777469530013 -1.37546070015652 0.204554525673559 1 1.66088685422941 13.1987082553138 -0.142777469530013 0.114071325353681
AT2G04880_at 8.62744165211535 8.89881456912557 8.93519080968564 9.01158190569224 8.91061748314033 8.81883881342041 8.88550575063686 8.99739440463123 8.62291934581883 8.95978871829838 8.46688122099658 8.42267913946209 8.56205458928813 8.50695046437455 8.13399830213587 8.7594843436992 8.48310957384782 8.43171650503896 8.66990210592623 0.120741020792163 0.122840012561733 0.124180391030452 0.122378657840532 0.121763764261403 0.130972646295051 0.128975549194553 0.127531638955719 0.132424743062116 0.122656364076454 0.123841666481725 0.121466807391899 0.125437946985446 0.124567968737025 0.122946929846601 0.123307722766649 0.136517750296801 0.140631540300951 0.121748821111611 2 2|0 +|/ 1719530 1720184 1719864.4 1717885 1720523 + gene protein_coding_gene FALSE TRUE AT2G04880.1|AT2G04880.2 ZAP1 (WRKY FAMILY TRANSCRIPTION FACTOR 1); transcription factor/ transcriptional activator Encodes WRKY1, a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes. WRKY1 is involved in the salicylic scid signaling pathway. The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of WRKY1. Identical to WRKY transcription factor 1 (WRKY DNA-binding protein 1) (Zinc- dependent activator protein 1) (Transcription factor ZAP1) (WRKY1) [Arabidopsis Thaliana] (GB:Q9SI37;GB:Q43388); similar to WRKY20 (WRKY DNA-binding protein 20), transcription factor [Arabidopsis thaliana] (TAIR:AT4G26640.2); similar to putative WRKY-type DNA binding protein [Glycine max] (GB:AAP85545.1); contains InterPro domain DNA-binding WRKY; (InterPro:IPR003657) -0.106621315234170 -1.37527256939186 0.204610622633241 1 1.66066824329667 17.4965378355742 -0.106621315234170 0.0548398337765
AT1G55890_at 6.57324597608367 7.43467648668251 6.49287606947998 6.82782190509111 7.04962061202931 6.85720875447372 7.44473536925983 7.50918890670447 5.90265326071621 6.42318663816575 6.10902482309976 6.7252200227215 6.20004773906319 6.47115043041854 6.99312974795239 6.48781570432603 6.53595054639783 5.98389314220418 6.77509285863546 0.207763504699638 0.209508363646284 0.204512162830282 0.204754256826897 0.205877739522287 0.220738910266061 0.21334207288765 0.213045373550216 0.212073912158665 0.203749653500423 0.202148495083568 0.200110830784725 0.205974967833765 0.206898193235958 0.205705226127360 0.201484671113106 0.207888548186253 0.202754956256176 0.211610062736405 1 1 + 20905683 20906192 20905966.182 20905011 20906465 + gene protein_coding_gene FALSE TRUE AT1G55890.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G13160.1); similar to Os01g0785700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044469.1); similar to Pentatricopeptide repeat [Medicago truncatula] (GB:ABD28713.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.181139207865151 -1.37522863061972 0.204623726236090 1 1.66061718835180 13.4263000626566 -0.181139207865151 0.163756519560185
AT1G69250_at 6.22780239607739 6.75508888547347 6.16660782022251 6.04457448374712 6.15315200988008 5.87580900280668 5.9948094034232 6.05215255150723 5.19446636082547 4.94801880371295 5.14925589306054 5.61073356846226 4.98095844834707 4.96440522094279 5.33573854872053 5.16340593426188 4.77587943381074 5.059160719254 5.47595367462994 0.238573705155191 0.242081557785815 0.234786460450834 0.245619318109900 0.230740570280528 0.241067589017846 0.232525119786560 0.250180328477894 0.235207247304386 0.239166423995468 0.232335266132700 0.232981400676126 0.232638861317619 0.234510516686451 0.239506283660926 0.230740570280528 0.245826046313459 0.236223318617705 0.2362650868965 1 1|0 +|/ 26038025 26038503 26038288.25 26036490 26039167 + gene protein_coding_gene FALSE TRUE AT1G69250.1|AT1G69250.2 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G13730.1); similar to putative ras-GTPase-activating protein SH3-domain binding protein [Trifolium pratense] (GB:BAE71310.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G03640.1); similar to putative ras-GTPase-activating protein SH3-domain binding protein [Trifolium pratense] (GB:BAE71310.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.136815769410765 -1.37505519564464 0.204675455795413 1 1.66041567407746 11.3267938194323 -0.136815769410765 0.105709426430553
AT4G34960_at 6.2363453905018 6.61712605272501 6.2040195935415 6.00877225078689 7.08018205462001 6.02298429306591 7.11294311907655 6.72074053931465 5.63269866496875 5.46920367160087 6.7509279459704 6.55386052615638 6.18649003996445 6.20741110878237 6.3485633940888 6.28329110236846 5.76981111435347 5.98603906645949 5.3397151668695 0.208694056821394 0.20433008014084 0.213047725196868 0.206617999043004 0.206409566833545 0.21419559368901 0.203450380377574 0.216595964254438 0.225727024750036 0.227495030302624 0.205129705671883 0.210326086881881 0.205695148857772 0.215738679727362 0.212225529427431 0.208586480409233 0.213326504337253 0.216626170223605 0.207836684130950 4 4|0 +|/ 16649476 16650556 16649950.444 16648610 16650902 + gene protein_coding_gene FALSE TRUE AT4G34960.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to CYP5 (cyclophilin 5), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G29960.1); similar to putative cyclophilin [Oryza sativa (japonica cultivar-group)] (GB:BAD53621.1); similar to Os09g0537600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063792.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) 0.218730446027006 1.37449151797028 0.204843658884648 1 1.6597608426189 12.3710583892445 0.218730446027006 0.208716078793995
AT4G39280_at 9.02164030166253 9.14256532755269 8.96912131888089 9.14446086053965 9.24873790214045 8.73647356582683 9.29534029733427 9.36320925982665 8.89743589361982 9.08356187320494 8.7888352328276 9.01847336842078 8.80771598454851 8.55670535576115 9.08432497626685 8.8656043373248 8.85410123660707 9.12232419581523 8.92129143530533 0.101798106433504 0.103043607087815 0.113478261854555 0.104122954870224 0.102096771062891 0.108840838911759 0.101376528957958 0.105767297515485 0.112293793160112 0.101138470115972 0.105911494069829 0.101138470115972 0.104838720742959 0.118186950232689 0.103212377405898 0.105883794557733 0.112888162471349 0.105063310397395 0.102041329349057 4 4|0 -|/ 18281642 18282656 18282196.444 18281438 18284894 - gene protein_coding_gene FALSE TRUE AT4G39280.1 phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative Identical to Probable phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20) (Phenylalanine--tRNA ligase alpha chain) (PheRS) [Arabidopsis Thaliana] (GB:Q9T034;GB:Q8LPR1); similar to phenylalanyl-tRNA synthetase class IIc family protein [Arabidopsis thaliana] (TAIR:AT3G58140.1); similar to Phenylalanyl-tRNA synthetase, class IIc; Aminoacyl-transfer RNA synthetase, class II [Medicago truncatula] (GB:ABE82725.1); similar to Os10g0400800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064545.1); similar to phenylalanyl-tRNA synthetase alpha chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47545.1); contains InterPro domain Phenylalanyl-tRNA synthetase, alpha subunit; (InterPro:IPR004529); contains InterPro domain Phenylalanyl-tRNA synthetase, class IIc; (InterPro:IPR002319); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) -0.130579766421973 -1.37386915454141 0.20502951232142 1 1.65903802395229 18.0425387642154 -0.130579766421973 0.096723123897722
AT3G13772_at 9.30464055805822 9.58070559939274 9.55170694855008 9.71413387993766 9.7131005101767 9.47329483803154 9.09762664010485 9.31516466303682 8.87587531917396 8.5934130346803 8.48054568384756 8.67285106287756 9.04750518033127 8.61723455864565 8.53130694087956 8.74156194193132 8.8749564568981 8.71019767707976 8.80936006061104 0.160072569458184 0.161681754653972 0.165108866104326 0.164226694160751 0.165954596432368 0.162131174740822 0.171425610479575 0.160115667761709 0.173434511736602 0.167437024114497 0.165504935327044 0.16390401041778 0.160161078700000 0.168773333687503 0.168494023372443 0.166887457654133 0.16170786336314 0.172870598260339 0.164118540290691 3 3 - 4521749 4522235 4521925.182 4521539 4524401 - gene protein_coding_gene FALSE TRUE AT3G13772.1 endomembrane protein 70, putative similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G25100.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G10840.1); similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT1G55130.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD10383.1); similar to putative PHG1A protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54580.1); similar to Nonaspanin (TM9SF) [Medicago truncatula] (GB:ABE93901.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) 0.119247572674375 1.37360568081152 0.205108235990672 1 1.65873208283420 18.2033314093110 0.119247572674375 0.0788157070349906
AT2G01930_at 5.93151066790683 5.8574238389642 5.64998234840279 5.32230839478909 6.65461943509698 6.71960847931375 5.91275488709582 5.79217562513888 6.5854277394999 6.18821999077584 6.7734214854441 6.79964210879867 6.20613455605539 6.89279163195298 6.15978862805568 6.73723286819272 6.04822390288092 5.77519099134985 6.47594051325059 0.169010487126065 0.159680421674697 0.166435653342844 0.168559013429889 0.168483969228327 0.171255459871791 0.165679802236005 0.162065615027002 0.167563972448193 0.164702123299922 0.164498694719256 0.159995598033405 0.16215440800578 0.165927289768168 0.167619100554661 0.159680421674697 0.17168295727741 0.170940984882012 0.159680421674697 2 2 - 427490 427915 427646.273 427116 428838 - gene protein_coding_gene FALSE TRUE AT2G01930.1|AT2G01930.2 ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1); DNA binding / specific transcriptional repressor/ transcription factor|ATBPC1/BBR/BPC1/BPC1 (BASIC PENTACYSTEINE1) BASIC PENTACYSTEINE1 (BPC1) is a regulator of the homeotic Arabidopsis thaliana gene SEEDSTICK (STK), which controls ovule identity. BPC1 induces conformational changes by cooperative binding to purine-rich elements present in the STK regulatory sequence. STK is upregulated in bpc1 mutant. similar to BPC2 (BASIC PENTACYSTEINE 2) [Arabidopsis thaliana] (TAIR:AT1G14685.1); similar to GAGA-binding transcriptional activator [Cardamine pratensis] (GB:ABG57059.1); contains InterPro domain GAGA binding-like; (InterPro:IPR010409) 0.110343633353366 1.37335460239908 0.205183280276434 1 1.65844056801351 12.4003393026386 0.110343633353366 0.0627837961444839
AT2G03730_at 8.04189755369701 8.53864870370122 8.67869202640194 8.80953605564169 9.46641047928038 8.99748147586471 9.6495153892951 9.57609009320397 8.75226614340563 9.39758547355456 9.3564766069797 8.8480745045191 9.05489932167825 8.90596186276094 8.42722512553556 9.42188837187074 9.03887961285813 8.79989466256944 9.78966445908469 0.163954680815549 0.163468870713263 0.168519933186472 0.164989909612316 0.162141509379457 0.171854608723348 0.167980508793265 0.165231099126013 0.186455519591212 0.160910932987243 0.159017162546608 0.160623074030462 0.165100732416557 0.169110097378502 0.167507511690203 0.159017162546608 0.163242522387856 0.178064925097911 0.160506617395830 2 2 - 1137829 1138509 1138157.545 1137608 1140183 - gene protein_coding_gene FALSE TRUE AT2G03730.1|AT2G03730.2 ACR5 (ACT Domain Repeat 5) Member of a small family of ACT domain containing proteins. ACT domains are thought to be involved in amino acid binding. similar to ACR4 (ACT REPEAT 4), amino acid binding [Arabidopsis thaliana] (TAIR:AT1G69040.2); similar to ACT domain, putative [Medicago truncatula] (GB:ABE90521.1); similar to Os03g0413100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050359.1); similar to Os03g0598100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050608.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.147508721214474 -1.37225614627968 0.205511873601975 1 1.65716558420690 18.1172012391081 -0.147508721214474 0.121035321309652
AT3G47480_at 8.782178155623 9.33497814586786 10.1377904549412 9.94946099962619 8.84555250677382 8.22310536304817 6.88834133657199 6.81762001303243 6.68584599406931 5.33356952124899 3.72644612787872 4.12567226400981 4.79633257126499 4.87818985495796 3.50385071379133 4.48718257012774 5.2767139687983 4.29633444943044 4.12949955715056 0.326116676885107 0.316194801370986 0.32675215153395 0.324896851502806 0.338919812761649 0.321055311351652 0.312722183977394 0.302647001636253 0.307934879285952 0.301996768492166 0.314928341882470 0.304385531133402 0.303161143119664 0.306244130819741 0.308203715468532 0.301996768492166 0.301996768492166 0.306518744962883 0.306412461655794 3 3 - 17507512 17507866 17507677.364 17507339 17507932 - gene protein_coding_gene FALSE TRUE AT3G47480.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT5G39670.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE80363.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Parvalbumin; (InterPro:IPR008080); contains InterPro domain Recoverin; (InterPro:IPR001125) 0.168283271266487 1.37221926115659 0.205522915316988 1 1.65712278218113 13.5070343748633 0.168283271266487 0.148211773992729
AT1G70760_at 9.7293365136664 9.66711524465591 9.1336263657254 9.28583886447407 9.87352789791813 9.56212382842306 10.4585967484662 10.2588507280461 9.995069610189 10.1358932278935 10.26047734 10.4697760219446 10.1496821113902 10.3421373793093 10.5036986610665 10.6435728308946 10.3004483600894 10.5088980388589 10.0513035190220 0.079116501932679 0.0752688892450566 0.0829308043279483 0.079970785711538 0.0789080186037183 0.0824854908714585 0.080339246337665 0.0746007294429998 0.0863938315981434 0.0746007294429998 0.0769764014121446 0.0755710235180288 0.0746007294429998 0.084038519175015 0.0761564312440668 0.0751659467871675 0.0826800430029703 0.0803504187515796 0.0774198858012134 1 1|0 +|/ 26690944 26691809 26691239.714 26690892 26692046 + gene protein_coding_gene FALSE TRUE AT1G70760.1 inorganic carbon transport protein-related similar to NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1] (GB:NP_681495.1); similar to Os05g0348100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055267.1) -0.114057339498726 -1.37149954879057 0.205738466465099 1 1.65628775725952 19.9751729215781 -0.114057339498726 0.0700627997696463
ATCG00440_at 12.625168901062 12.6722072112920 13.0432685398978 12.9308900592023 12.6511273898329 12.5284199098211 12.9458929481572 12.9552355822263 13.3895099384306 13.6537733140623 13.9595679714455 13.8993782713071 13.6461682308552 13.7280830483121 13.6520079686336 13.8075689756419 13.3587693322449 13.658980259694 13.4823706985336 0.0768525009163719 0.071734215681461 0.0748234230579862 0.0731271138564473 0.0736834654859335 0.0762096027663312 0.0726444193673347 0.0742513996596667 0.0848329805120875 0.0729900047737962 0.0766727058345946 0.0730457769962242 0.0729508045454182 0.0769333232865 0.0768574315266015 0.0725761054897526 0.0796721167000982 0.0776803791722702 0.0732669640376082 C C - 50045 50318 50175.909 50001 50363 - gene protein_coding_gene FALSE TRUE ATCG00440.1 Encodes NADH dehydrogenase D3 subunit of the chloroplast NAD(P)H dehydrogenase complex Identical to NAD(P)H-quinone oxidoreductase chain 3, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 3) (NADH-plastoquinone oxidoreductase chain 3) (ndhC) [Arabidopsis Thaliana] (GB:P56751); similar to NADH-ubiquinone oxidoreductase chain 3, putative [Arabidopsis thaliana] (TAIR:AT2G07751.1); similar to NADH dehydrogenase subunit 3 [Jasminum subhumile] (GB:ABG74817.1); similar to NADH dehydrogenase subunit C [Populus alba] (GB:YP_665563.1); contains InterPro domain NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; (InterPro:IPR000440) 0.0970322521310565 1.37142923729027 0.205759534928728 1 1.65620619467487 26.4052097298242 0.0970322521310565 0.0299669203113361
AT1G21690_at 5.53305989216198 5.6698481175802 5.18797389520903 5.68671233884106 5.67973836931301 5.52193560788571 5.53204043278399 5.63028647874247 4.0153180743896 4.80238602473588 4.41511659639457 4.79662921839469 5.18610545495166 4.7826035440144 4.77145025634049 5.15016557000103 5.1154573929432 4.47691178624694 4.70063018620196 0.214532808786648 0.212422633227525 0.218747822948090 0.217085778783458 0.212984555864152 0.217053124530980 0.220954622645378 0.212196611577055 0.223676455733894 0.211383218320328 0.212670617283668 0.207842364578977 0.212143270066221 0.210197989295254 0.206823787045600 0.210578888216535 0.225463869955069 0.221530098349601 0.208794201132533 1 1|0 +|/ 7616990 7618306 7617637.875 7615611 7618594 + gene protein_coding_gene FALSE TRUE AT1G21690.1|AT1G21690.2 EMB1968 (EMBRYO DEFECTIVE 1968); ATPase similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to Os12g0176500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066296.1); similar to replication factor C 37 kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB16441.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959)|similar to replication factor C 36 kDA, putative [Arabidopsis thaliana] (TAIR:AT1G77470.1); similar to replication factor C 40 kDa, putative [Arabidopsis thaliana] (TAIR:AT1G63160.1); similar to Os12g0176500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066296.1); similar to replication factor C 37 kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB16441.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Chaperonin clpA/B; (InterPro:IPR001270); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.129237435731719 1.37102957617007 0.205879326529363 1 1.65574262890039 10.2266575944914 0.129237435731719 0.0951021666166063
AT2G21870_at 10.7407593782738 10.7001523720369 11.0562355914077 10.8719090382235 10.6385461435245 10.5073491041403 10.9922503091796 10.7813102198285 10.3939823501828 10.5381798973044 10.5431038141830 10.7873289115181 10.7065404775627 10.4279048921059 10.8429196206060 10.5523249615653 10.7634729933426 10.7134355091985 10.3289330197306 0.083164098705929 0.0781304881489728 0.0814964022244257 0.0818292176297061 0.0791842287222605 0.0807201847760627 0.0801646680594322 0.078094229112536 0.0789504701447023 0.0818054787895975 0.0799291290379374 0.078094229112536 0.0804507952957715 0.0797418851722937 0.0792140453907135 0.080628322362062 0.0791843572941654 0.0790248643167226 0.0840248002426764 2 2|0 -|/ 9327539 9328736 9328183.8 9327278 9329814 - gene protein_coding_gene FALSE TRUE AT2G21870.1|AT2G21870.2 Identical to Probable ATP synthase 24 kDa subunit, mitochondrial precursor (EC 3.6.3.14) [Arabidopsis Thaliana] (GB:Q9SJ12;GB:Q8LBN3); similar to hypothetical protein MtrDRAFT_AC155898g5v1 [Medicago truncatula] (GB:ABE87707.1) 0.105827853965986 1.37006620256381 0.206168328142053 1 1.65462555176927 21.3298110128683 0.105827853965986 0.0539901684586222
AT2G16510_at 10.4962137404870 10.5395727316694 10.6846027080923 10.7489017637417 10.5728924421845 10.6580031525953 10.6840194225916 11.0697542106683 10.5301601064929 10.5705988623161 10.8795412557006 10.7098502822934 10.8459005788343 10.8309966266148 10.8442198050930 10.5538019968057 10.5138158381478 10.737273618042 10.3413486341173 0.0663000355414281 0.0606326474223791 0.067920804980743 0.0623826276872038 0.0624323644584913 0.0657282626587072 0.0637392134207476 0.0610332921141741 0.065589070126568 0.0606326474223791 0.0634429780360798 0.0622281023169479 0.0649885089879458 0.0623173703823158 0.0636461310810344 0.0606326474223791 0.063649971720353 0.0639666143063122 0.0608918560806555 2 2 - 7167110 7167489 7167337.545 7166711 7167974 - gene protein_coding_gene FALSE TRUE AT2G16510.1 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 4 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 4) (AVAP4) [Arabidopsis Thaliana] (GB:P59229;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q944R9;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 2 (EC 3.6.3.14) (V- ATPase 16 kDa proteolipid subunit 2) (AVAP2) [Arabidopsis Thaliana] (GB:P59228;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); Identical to Vacuolar ATP synthase 16 kDa proteolipid subunit 1/3/5 (EC 3.6.3.14) (V-ATPase 16 kDa proteolipid subunit 1/3/5) (AVAP5) [Arabidopsis Thaliana] (GB:P59227;GB:Q39037;GB:Q39038;GB:Q39039;GB:Q42424;GB:Q96298); similar to AVA-P1 (vacuolar H+-pumping ATPase 16 kDa proteolipid subunit 1), ATPase/ hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT4G34720.1); similar to ATVHA-C3/AVA-P3 (vacuolar-type H(+)-ATPase C3), ATPase [Arabidopsis thaliana] (TAIR:AT4G38920.1); similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (GB:Q43434); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, V0 complex, proteolipid subunit C, eukaryotic; (InterPro:IPR011555) 0.113716228091035 1.37003005402078 0.206179179105909 1 1.65458364510957 21.2918087887539 0.113716228091035 0.0696638057622461
AT4G11010_at 9.77556354219924 9.83158926050275 10.0481353267217 9.68374314122121 9.80918759312167 9.18763068862145 10.6941294298109 10.3139982714245 8.82137649041545 9.9086393675352 10.2663455957371 10.5355917035801 9.93718064318094 10.2504237461212 10.408461094434 10.0211222195338 9.8023695854875 9.98905600844816 9.3334538279177 0.144984006102218 0.141919950310654 0.140630068449905 0.156551589341886 0.142422067447558 0.156334957698492 0.142382465137352 0.139969309361885 0.167691413040204 0.144287773504886 0.144493888326711 0.142781410348102 0.139863557655501 0.142539159830633 0.147653902729291 0.139259600043576 0.158975091335444 0.141435992635151 0.149038288599844 4 4 - 6732778 6733833 6733279.364 6732576 6734357 - gene protein_coding_gene FALSE TRUE AT4G11010.1 NDPK3 (NUCLEOSIDE DIPHOSPHATE KINASE 3); ATP binding / nucleoside diphosphate kinase nucleoside diphosphate kinase 3 (ndpk3) Identical to Nucleoside diphosphate kinase III, chloroplast/mitochondrial precursor (EC 2.7.4.6) (NDK III) (NDP kinase III) (NDPK III) (NDPK3) [Arabidopsis Thaliana] (GB:O49203); similar to nucleoside diphosphate kinase 4 (NDK4) [Arabidopsis thaliana] (TAIR:AT4G23900.1); similar to putative nucleoside diphosphate kinase III [Thlaspi caerulescens] (GB:AAY18431.1); contains InterPro domain Nucleoside diphosphate kinase; (InterPro:IPR001564) 0.162591495356525 1.36986851480857 0.206227675480338 1 1.65439638245422 19.6709015166303 0.162591495356525 0.141307714373701
AT4G18230_at 6.51251243042886 6.75543226470095 6.21695253710696 6.31388658310639 6.36569771877695 6.6833377710081 6.26107846662991 6.95436717711637 5.73600135395955 6.04918376121517 5.4559738251291 5.73523962518964 5.85253069398212 6.15459104270999 6.22622597402737 5.5179914013716 5.37771397881454 5.36208393108002 5.63527151837563 0.284639496119235 0.272127818344307 0.268519159896956 0.268519159896956 0.281664472597293 0.294734942618324 0.272159093134438 0.280523887703288 0.282522230671510 0.281550239938093 0.279670752079103 0.273761705829271 0.277599293263964 0.274464228555004 0.273183878170698 0.268519159896956 0.286693509112717 0.297457878775901 0.268519159896956 4 4|0 -|/ 10081066 10081630 10081315.125 10080366 10081950 - gene protein_coding_gene FALSE TRUE AT4G18230.1 similar to unknown [Solanum tuberosum] (GB:ABA81886.1); contains domain UDP-Glycosyltransferase/glycogen phosphorylase (SSF53756); contains domain no description (G3D.3.40.50.2000); contains domain FAMILY NOT NAMED (PTHR12154); contains domain SUBFAMILY NOT NAMED (PTHR12154:SF8) -0.161202000515746 -1.36986287717219 0.20622936815643 1 1.65438984732496 12.2664644620534 -0.161202000515746 0.139515838606707
AT2G42750_at 10.3794846343811 10.43417779075 10.2761585903769 10.5178372461937 11.2242374607577 10.9716511712207 11.2592386683105 11.1001298428239 11.2668414196902 11.6180941325607 11.2481892575358 11.1557772643888 11.5243279550178 11.3810132494815 10.8798738954145 11.8120403877776 11.4493351783502 10.8258701687608 11.5046874752330 0.0932070016301637 0.0878307533421943 0.089643911751229 0.0928075302913957 0.0920016195528822 0.0879259269626929 0.0921736215299903 0.0897589053886664 0.0942195161564454 0.090067125876421 0.0878307533421943 0.0878307533421943 0.0878307533421943 0.0878307533421943 0.0945341583404585 0.0889492033372584 0.0942740414280536 0.0882154922548879 0.0878307533421943 2 2|0 +|/ 17801263 17802471 17801949.333 17800384 17802757 + gene protein_coding_gene FALSE TRUE AT2G42750.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23240.1); similar to 4Fe-4S ferredoxin, iron-sulfur binding; Heat shock protein DnaJ [Medicago truncatula] (GB:ABE80753.1); similar to Os01g0730500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044143.1); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain 3Fe-4S ferredoxin; (InterPro:IPR001080); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.112220436583085 -1.36844523829183 0.206655387819191 1 1.65274704388508 22.1442449733112 -0.112220436583085 0.0671388236361268
AT4G39170_at 7.23511848133855 7.34960451687697 7.04109253371112 7.1884789361185 7.86411109001513 7.06238415204744 7.40076840251782 7.13466451910328 7.12848219605026 6.96534217912816 7.60646021308307 7.6144939136062 7.38970909936416 7.40744572412156 7.51877683900037 7.16797610448209 6.27412854848129 7.3828270905657 6.80542527742371 0.168872463374472 0.170223440592654 0.176948467643041 0.169771119725947 0.166980455064288 0.178559238462721 0.165630377990749 0.171098154090131 0.177185017159622 0.166902307849275 0.165094987928827 0.170474173407380 0.173580358884626 0.176803834449167 0.164514571488679 0.165909614043219 0.185664637663649 0.176378445120516 0.172611433030801 4 4 + 18242941 18243430 18243146 18240623 18243789 + gene protein_coding_gene FALSE TRUE AT4G39170.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative [Arabidopsis thaliana] (TAIR:AT1G75370.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT2G21520.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE85412.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.168894169367284 1.36756674695932 0.206919766156006 1 1.65172954026526 14.4153497001938 0.168894169367284 0.149710505221234
AT3G13620_at 5.49604288035247 5.63424021993370 5.60654809636382 5.74319888273478 5.80823760046614 5.13091330461956 6.34396531628168 6.34707028350863 4.87752635183765 5.79457957570985 5.46629266793187 5.89532647544732 5.92387675730707 5.47738609788827 5.36169368216086 5.85219394822824 5.62919651617519 5.58553007412289 6.0113805500094 0.253242495930353 0.251143503976935 0.262424760958625 0.254795979529462 0.253300504648534 0.281411771447464 0.259864344656216 0.258496943104027 0.259736845380901 0.250524747163705 0.251926019992082 0.256243342136259 0.257595214870486 0.257851252683670 0.253140473231497 0.249264840769982 0.263464141864359 0.262252750856217 0.255752052277441 3 3 - 4451018 4451435 4451217.636 4450752 4452631 - gene protein_coding_gene FALSE TRUE AT3G13620.1 amino acid permease family protein similar to amino acid permease family protein [Arabidopsis thaliana] (TAIR:AT3G19553.1); similar to Amino acid/polyamine transporter I [Medicago truncatula] (GB:ABE78683.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) -0.147665167875481 -1.36749543997838 0.206941238457617 1 1.65164696712624 11.3688266663293 -0.147665167875481 0.121945199050679
AT2G04360_at 7.51953356578334 7.41527538300594 7.39809740460497 7.11411905118569 7.38256355176516 6.55423053525408 7.90954628529316 7.35020452449488 6.30988079081643 6.8580863384968 6.64156208101372 6.5851655590416 6.33577832549166 6.30794191810843 6.71995089817017 6.37956177882224 6.98822451549287 6.18097838620826 6.23883863792155 0.246868464427357 0.250351192713050 0.263752472914776 0.263955171527869 0.257386496088841 0.262987108784855 0.255404165501552 0.255368764825129 0.285971181759559 0.246868464427357 0.252957682102176 0.248110599329711 0.258783113719712 0.271530074839195 0.260222021880306 0.246868464427357 0.263190056700345 0.262824155446611 0.246868464427357 2 2|0 -|/ 1519647 1520302 1519871.333 1519394 1521053 - gene protein_coding_gene FALSE TRUE AT2G04360.1 similar to hypothetical protein alr4045 [Nostoc sp. PCC 7120] (GB:NP_488085.1); similar to Os08g0345400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061601.1) -0.193963563446581 -1.36704758826088 0.207076141546202 1 1.65112841691776 13.8236116319427 -0.193963563446581 0.180716823929686
AT1G56190_at 10.5437551159775 10.5544695596803 10.5486390620020 10.4963552405339 9.94162940676593 9.9106478677818 10.6435893267421 10.8481159822142 11.2135115892076 11.0270784350890 11.1561334078928 11.4471804710738 10.9554854390510 11.2422445886540 11.4807233125184 11.6597963363778 10.8541867136997 11.4681870851107 10.9318787120338 0.0657198403269244 0.0623972739118864 0.0679762115213136 0.0660542383019853 0.0637009859144529 0.0676561801521523 0.0643203709107973 0.0625818761359905 0.0669476741810179 0.064802285973974 0.0633350304028115 0.0630604939104197 0.0629758060096714 0.0629639269450926 0.0640256021893092 0.0623449294618689 0.067271659922569 0.0640906286856107 0.0643583119068772 1 1|0 +|/ 21033341 21034077 21033736.8 21031903 21034314 + gene protein_coding_gene FALSE TRUE AT1G56190.1 phosphoglycerate kinase, putative similar to PGK (PHOSPHOGLYCERATE KINASE) [Arabidopsis thaliana] (TAIR:AT1G79550.2); similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to chloroplast phosphoglycerate kinase [Populus nigra] (GB:BAA33803.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80998.1); similar to Phosphoglycerate kinase, chloroplast precursor (GB:P50318); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576) -0.0988310056810628 -1.36670883517001 0.207178231889215 1 1.65073625648179 21.6061410692493 -0.0988310056810628 0.0369703276025500
AT2G30570_at 13.1831955089588 13.3331558904970 13.3640167431965 13.3164057090388 13.2690079172210 13.2284575582172 13.3430073553971 13.5003932069611 13.9792580949212 13.8230939694624 14.1959964993536 14.2771799070283 14.0465531219564 14.0497458944012 14.0540317352618 14.1136479198406 13.8303724040705 14.1906589284223 13.7482075658376 0.0731638564286165 0.0710825076908526 0.0768882341974408 0.0700896682620357 0.0712689901019364 0.0799326195962815 0.073446082417357 0.0714248425172561 0.0767528736099385 0.0718082056633427 0.0712544157007484 0.0698898177505464 0.0698898177505464 0.0753771638206633 0.0717339157055406 0.0698898177505464 0.080138852837068 0.0716576930661205 0.0706783858977048 2 0|2 /|- 13026403 13026609 13026501.7 13025520 13027271 - gene protein_coding_gene FALSE TRUE AT2G30570.1|AT2G30570.2 photosystem II reaction center W (PsbW) protein-related Encodes a protein similar to photosystem II reaction center subunit W. Identical to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (PSBW) [Arabidopsis Thaliana] (GB:Q39194;GB:O04338); similar to Photosystem II reaction center W protein, chloroplast precursor (PSII 6.1 kDa protein) (GB:Q41387); contains InterPro domain Photosystem II protein PsbW, class 2; (InterPro:IPR009806) 0.0995603746748537 1.36652795965565 0.207232760239013 1 1.65052688861868 27.2896849085354 0.0995603746748537 0.0391461601346892
AT2G36300_at 7.0945669257255 7.66502267158363 7.70621435380903 7.97353245741486 7.97527130367756 7.40928938129905 7.36972482726567 7.80450226675386 6.95330934572085 6.82758813002213 7.12975810079433 7.14469094151973 7.05944913111027 6.80418152472324 6.99872255085402 6.76029333301176 6.92772468960477 6.6797758959385 6.79650744010803 0.188594519927740 0.186495049758332 0.188999008564567 0.188699557025409 0.186430999091138 0.198196406083475 0.182848749273962 0.180560140035178 0.183854545086169 0.193917536454050 0.188192844416963 0.179867483945328 0.183339231741601 0.187252378330554 0.184245686048879 0.178818544937591 0.199576511034523 0.180446985873809 0.193493708204553 2 2 - 15220443 15221000 15220651.182 15220119 15221351 - gene protein_coding_gene FALSE TRUE AT2G36300.1 integral membrane Yip1 family protein similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT3G52760.1); similar to Protein of unknown function DUF649 [Medicago truncatula] (GB:ABE77839.1); contains InterPro domain Yip1 domain; (InterPro:IPR006977) 0.180781125106098 1.36644750905947 0.207257017560082 1 1.65043377049425 14.5233702698886 0.180781125106098 0.164742739595009
AT4G31530_at 9.2806741995805 9.28276223475937 9.2141868783762 9.1266974026172 9.21843971325131 9.02434753472012 9.70148058366245 9.74243647030657 9.6011795373149 9.7029055275099 9.85628430300457 9.71674015942367 9.64609297301354 9.84148011651997 9.98017917058835 9.97225968771316 9.46949659499732 9.73269153438037 9.55231528652755 0.102373734913485 0.103887639772544 0.101055342589007 0.0970111410644274 0.100791637700010 0.110749525471205 0.107415727498513 0.102287716042799 0.114572274050548 0.103582658543013 0.103498891042877 0.101120333772307 0.103853612411065 0.104439618274662 0.100365435445496 0.09881414792052 0.106591859179294 0.110013599071103 0.103673223803496 4 4|0 +|/ 15282861 15284008 15283363.333 15282236 15284222 + gene protein_coding_gene FALSE TRUE AT4G31530.1 catalytic/ coenzyme binding similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT2G37660.1); similar to Male sterility-like [Trichodesmium erythraeum IMS101] (GB:YP_724032.1); similar to Os03g0355900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050138.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0989087697491748 -1.36523869267493 0.207621791770422 1 1.6490350193878 19.0217297194455 -0.0989087697491748 0.0375205206627533
AT1G67080_at 9.0465171779323 9.34721857793806 9.53446418493429 9.49756863798196 9.91325591871517 9.36688380431433 9.98501021504269 9.53310645622989 9.1528723996499 9.27488067610477 9.58474605547662 9.47687201341058 9.46031630442357 9.28563255549458 9.16829319983676 9.63218159404158 9.58138907185855 9.8271196248686 9.44312908232414 0.105306977043953 0.104571165220086 0.115134063191317 0.112042555201358 0.108053042607715 0.111128302491840 0.107995675583886 0.106713032707696 0.127222897867538 0.107928563075916 0.105558916890537 0.105435554886192 0.108976518675144 0.113444315396523 0.110145016515909 0.106733351065142 0.124267441682119 0.104338122323289 0.106297599977874 1 1 - 25049097 25049973 25049510 25048888 25050523 - gene protein_coding_gene FALSE TRUE AT1G67080.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52477.1) 0.155927389717064 1.36456158807040 0.207826356899601 1 1.64825185477736 18.9241845491957 0.155927389717064 0.133434248025409
AT4G23630_at 11.2777367269743 11.3808343600077 11.6652189371450 11.6869900044070 11.3436834217145 11.2443524008297 11.7193203010027 11.8115306904001 10.4673456877637 10.9154793664071 11.0786948704040 11.0157856636478 11.0863978892770 10.9463710556717 10.7219058325017 11.0731289943207 11.0957052024516 10.7609421500274 10.7687481068970 0.0709364992248417 0.0709364992248417 0.0720695008345856 0.0709364992248417 0.0726380725478928 0.0732018690301328 0.073390373223781 0.0774479501576501 0.0836859608086965 0.0715462626571203 0.0709364992248417 0.0709364992248417 0.0745222484618170 0.0779934637156528 0.0721961918784496 0.071550729509899 0.0819674327452704 0.0737690975428227 0.07240245592707 4 4|0 +|/ 12318807 12319545 12319075.125 12317071 12319947 + gene protein_coding_gene FALSE TRUE AT4G23630.1 BTI1 (VIRB2-INTERACTING PROTEIN 1) similar to BTI2 (VIRB2-INTERACTING PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT4G11220.1); similar to Os05g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056102.1); similar to Os01g0736900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044177.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB32723.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0964405375131678 1.36406412166445 0.207976760557419 1 1.64767661746419 22.3609871107986 0.0964405375131678 0.0297092618788014
AT1G03910_at 8.76504983331984 8.9856112986578 8.7112325049975 8.74664075165239 9.46795052032364 8.73747351874461 9.15913174910293 8.92940350842722 8.5273809570026 8.64462216426476 8.45299855274423 8.56958500055169 8.21096965684597 8.30230363460793 8.31915618433262 8.44245125738024 8.21129350721621 8.22365307087368 8.67703282606153 0.1732462527064 0.175239866907130 0.171834820933725 0.176152221224981 0.18161072515904 0.177876756697619 0.174827486688785 0.18230478506193 0.179839093692215 0.166806324303326 0.172124365503868 0.168845482291706 0.175576754413505 0.173721491665557 0.177492282538615 0.173068952534414 0.187221323568879 0.175379478018775 0.171495631827793 1 1|0 +|/ 999655 1000174 999906.111 996117 1000230 + gene protein_coding_gene FALSE TRUE AT1G03910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37540.1); contains InterPro domain Transglutaminase, C-terminal; (InterPro:IPR008958) -0.159384365577315 -1.36405878532331 0.207978374450154 1 1.64767044756529 17.4167600475759 -0.159384365577315 0.138040013548260
AT1G20560_at 7.17311179399929 7.02829728073856 7.83882401784496 7.86971217861809 7.4568182022892 7.87380578250277 7.53250071753923 7.81595418075508 7.77730571035756 8.2454161458231 8.13527308605816 7.25690934647772 7.79219622281991 7.72162452921294 7.44353681719869 8.08959979248831 8.12265359509457 7.97241589933866 7.78983527797646 0.160086567851898 0.165328748090875 0.159830791881555 0.157281993400588 0.16477031024628 0.161232327927229 0.155799916389199 0.156298748779496 0.172276122365929 0.164123688116552 0.161003666664198 0.161274253822781 0.159655350343639 0.164811622261856 0.170862701555608 0.155799916389199 0.161537564999672 0.164620120534840 0.160394955353464 1 1 - 7119997 7120480 7120177.818 7119666 7121807 - gene protein_coding_gene FALSE TRUE AT1G20560.1|AT1G20560.2 AMP-dependent synthetase and ligase family protein similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT2G17650.1); similar to Putative AMP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05508.1); similar to Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Magnetospirillum magneticum AMB-1] (GB:YP_421864.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|similar to AMP-dependent synthetase and ligase family protein [Arabidopsis thaliana] (TAIR:AT2G17650.1); similar to AMP-binding enzyme, putative [Medicago truncatula] (GB:ABE77669.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.125790584211400 1.36304638112850 0.208284754986573 1 1.64650016834504 15.4507756221885 0.125790584211400 0.0909401566087549
AT1G75130_at 7.99986441402063 8.08419140669324 7.79583946154023 7.92728285929784 8.27963307107635 8.02813418958276 6.95602687787822 6.59255605674608 7.55099721466252 7.11766545357432 6.90684269169765 6.86941476052314 6.63133713003007 7.04948373278086 6.92204941323801 7.07865082578905 7.19592660968268 7.30693865603667 7.39875038230759 0.151165199944536 0.144464426573285 0.144769152623564 0.144501430202474 0.144067147184757 0.146151296861964 0.148556229227991 0.148826945431391 0.153553521767873 0.145714634186994 0.142243490674602 0.141978065892253 0.145670270270791 0.146038749100146 0.149900654741142 0.141978065892253 0.151678604240867 0.145449440974375 0.146665871928757 1 1 - 28203750 28204328 28204017.909 28203631 28205611 - gene protein_coding_gene FALSE TRUE AT1G75130.1 CYP721A1 (cytochrome P450, family 721, subfamily A, polypeptide 1); oxygen binding member of CYP721A similar to BAS1 (PHYB ACTIVATION TAGGED SUPPRESSOR 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT2G26710.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE92022.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.119419416915273 1.35981580586999 0.209265007067541 1 1.64276936618964 14.8833834559313 0.119419416915273 0.0811239091752885
AT1G04440_at 8.61445904564421 8.7348720553571 9.25617879185154 8.82381261143847 9.1173209811475 8.93459171536412 8.60907001167662 8.3817611149171 8.6762575328347 8.903530451182 8.59496405933026 8.41779084316446 8.78429849729765 8.54674430027107 8.11943137632024 8.58138035426062 8.61512755131982 8.62242986930556 8.6106548353807 0.112263295394346 0.110529743335288 0.111681833681680 0.111432515985441 0.114355801723702 0.118845247683284 0.116236936145413 0.106691189450124 0.112861341783539 0.113149805495968 0.111971570619497 0.109327613886335 0.10851195312143 0.120197603188400 0.116024622768246 0.110616483782957 0.121698781803720 0.116631936272497 0.111744764821001 1 1 + 1204489 1205617 1205157.818 1202254 1205802 + gene protein_coding_gene FALSE TRUE AT1G04440.1 CKL13 (CASEIN KINASE LIKE 13); casein kinase I/ kinase similar to CKI1 (CASEIN KINASE I), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT4G14340.1); similar to CKL10 (Casein Kinase I-like 10), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT3G23340.1); similar to CKL8 (Casein Kinase I-like 8), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G43320.1); similar to Os02g0810400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048470.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.126529358997279 1.35932305911583 0.209414868597124 1 1.64220079794388 17.4417175223618 0.126529358997279 0.0926285698383975
AT3G02090_at 11.0431472883365 11.0777932816077 11.1404510311504 11.1668321992861 10.8861981667304 10.7908449717742 11.0661704205569 11.1440205714296 10.6797208623205 10.6375067448677 10.8369351150116 10.9567236945635 10.7990092530702 10.7780297992810 11.0773787547635 10.8058086691478 10.8271477886255 10.7556609212537 10.4204651833026 0.0621767270634875 0.0607431397044147 0.0635740868140806 0.0611013077841084 0.0621678035109744 0.0643866774836277 0.0619324951462599 0.0647314003650855 0.0670669430380998 0.0602223910778796 0.0611314295746762 0.0604576450487328 0.0602223910778796 0.0620123874171202 0.065842159326551 0.0610649086969381 0.0614918846711679 0.0631198283037056 0.0632528265179287 3 3|0 +|/ 367290 368505 367848 365556 368918 + gene protein_coding_gene FALSE TRUE AT3G02090.1|AT3G02090.2 MPPBETA; metalloendopeptidase Identical to Probable mitochondrial-processing peptidase subunit beta, mitochondrial precursor (EC 3.4.24.64) (Beta-MPP) [Arabidopsis Thaliana] (GB:Q42290;GB:Q9SGA7); similar to mitochondrial processing peptidase alpha subunit, putative [Arabidopsis thaliana] (TAIR:AT1G51980.1); similar to mitochondrial processing peptidase beta subunit [Cucumis melo] (GB:AAK07827.1); similar to mitochondrial processing peptidase-like [Solanum tuberosum] (GB:ABB86276.1); similar to mitochondrial processing peptidase [Avicennia marina] (GB:AAK51086.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.094327260526798 1.35846744799788 0.209675308708738 1 1.64121382939760 21.7563410811730 0.094327260526798 0.0225961873169119
AT1G77760_at 11.6190233440205 11.7800240430873 11.8368953748805 11.9692637589459 11.6991860136583 11.7052590799302 11.9711412703012 11.9429200873024 10.8953676260399 11.4977730049966 11.1827095740438 10.9656319309666 10.8678572455153 10.9219620973623 10.2004889659088 11.2720403763261 11.2602397819691 11.4252663079452 11.1538743384387 0.0796464109698466 0.0795282830269662 0.0831703100058456 0.0791555089497331 0.0837006007306674 0.0811764167482592 0.0799847200977224 0.0821098864241414 0.0973605129315078 0.0833929384638443 0.0797653333495179 0.0789323161683304 0.0802695792993648 0.0854962613002069 0.0906700796832317 0.0796646686130601 0.0819609870659914 0.0854858688317609 0.0824331705514463 1 1 - 29240959 29241466 29241294 29240697 29244339 - gene protein_coding_gene FALSE TRUE AT1G77760.1 NIA1 (NITRATE REDUCTASE 1) Encodes the cytosolic minor isoform of nitrate reductase (NR). Involved in the first step of nitrate assimilation, it contributes about 15% of the nitrate reductase activity in shoots. Similar to molybdopterin oxidoreductases at the N-terminus, and to FAD/NAD-binding cytochrome reductases at the C-terminus. Cofactors: FAD, heme iron (cytochrome B-557), and molybdenum-pterin. Identical to Nitrate reductase [NADH] 1 (EC 1.7.1.1) (NR1) (NIA1) [Arabidopsis Thaliana] (GB:P11832;GB:Q9CA18); similar to NIA2 (NITRATE REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT1G37130.1); similar to Nitrate reductase [NADH], clone PBNBR1405 (NR) (GB:P39867); similar to Nitrate reductase [NADH], clone PBNBR1412 (NR) (GB:P39868); similar to nitrate reductase 2; NR2 [synthetic construct] (GB:AAS86310.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain NADH:cytochrome b5 reductase (CBR); (InterPro:IPR001834); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066); contains InterPro domain Nitrate reductase NADH dependant; (InterPro:IPR012137); contains InterPro domain Cytochrome b5; (InterPro:IPR001199); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) -0.097969958738955 -1.35732777698287 0.210022645637128 1 1.63989978235106 22.9126455505973 -0.097969958738955 0.0364138971687653
AT3G18215_at 6.03573995484614 6.9105182501972 5.29389881138443 5.76722268664033 6.39354202788247 6.7519279089359 5.10959747912081 6.4346394749616 5.55393735737028 6.1807355804179 7.26121172226952 6.76612704769638 6.70401962968965 7.27942328137101 6.4805898913789 7.02436488308708 6.40559120111763 6.9852522533046 6.90416698773763 0.213635990429629 0.212361101454902 0.218910902377895 0.212361101454902 0.217242555231622 0.219312759057148 0.223501556976686 0.216266826842532 0.251107317879595 0.212361101454902 0.212361101454902 0.215809285629593 0.212447933887025 0.21822836094008 0.218298939919436 0.216731910575033 0.225792454945938 0.220961018950234 0.212361101454902 3 3 + 6241810 6242263 6242049.727 6240856 6242579 + gene protein_coding_gene FALSE TRUE AT3G18215.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24600.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55679.1); similar to Os02g0292800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046597.1); similar to Os08g0153900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061011.1); contains InterPro domain Protein of unknown function DUF599; (InterPro:IPR006747) 0.289699957913379 1.35724082860894 0.210049165100887 1 1.63979955815772 12.6252703895367 0.289699957913379 0.293349313625398
AT2G10950_at 8.2998294826323 8.53021858590765 8.33419953301193 8.19274277583163 8.72593615572696 8.21686076060606 8.22808619008432 8.33675481308675 8.07041472245059 8.16373413778596 8.00438523360075 7.62548733937822 8.190485259002 7.96992018440949 7.4892254833257 7.90001715025647 7.64585511994616 7.51102779645949 7.99110588135377 0.165795639071478 0.163758775824735 0.171339420616609 0.164145010118006 0.167064169991619 0.169855905482078 0.164284192217032 0.164229158365461 0.171921562000190 0.175279221675906 0.163157987040837 0.169405461087851 0.163418902382111 0.173024558313647 0.174673666318624 0.162146429267835 0.18241888688265 0.168429318540627 0.173688789417279 2 2 - 4322623 4323432 4323023.273 4322495 4324944 - gene protein_coding_gene FALSE TRUE AT2G10950.1 BSD domain-containing protein similar to BSD domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G65910.1); similar to Os01g0766600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044357.1); similar to putative BSD protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53348.1); contains InterPro domain BSD; (InterPro:IPR005607) -0.132160964849879 -1.35699614114712 0.210123810783207 1 1.63951753142792 16.2916462169413 -0.132160964849879 0.101507407838915
AT2G45820_at 10.6392235950704 10.5724921439186 10.6950124149708 10.6335323360778 10.8999424523734 10.9357797442584 10.5905113137829 11.1159229998604 11.1073001413555 11.2085446848522 11.5736656350236 11.3092488630249 11.4847059644128 11.3977926739093 11.2048867074112 11.6093161080366 11.1708444160310 11.3228132843322 11.2641983751389 0.0864810577220359 0.085653700923979 0.0863189046009663 0.082589820487958 0.0802768545715043 0.0850252426217052 0.0839681849691645 0.0834923767068748 0.0895246265981528 0.0868008902440584 0.0803998520336352 0.0803294453544102 0.0805305429585278 0.0825828730493345 0.0806936066422615 0.0799093010708636 0.083910208839641 0.0804541478523313 0.0822790795149831 2 2|0 -|/ 18870245 18871602 18871108.75 18870032 18871765 - gene protein_coding_gene FALSE TRUE AT2G45820.1 DNA-binding protein, putative similar to DNA-binding family protein / remorin family protein [Arabidopsis thaliana] (TAIR:AT3G61260.1); similar to DNA-binding protein (GB:AAA57124.1); contains InterPro domain Remorin, N-terminal region; (InterPro:IPR005518); contains InterPro domain Remorin, C-terminal region; (InterPro:IPR005516) 0.126170348251292 1.35649868991712 0.210275636100907 1 1.63894426541404 22.0490555951915 0.126170348251292 0.0924790001126389
AT2G17640_at 8.42665895338222 8.22727906324646 8.66799101397032 8.47681227157828 8.77365643931136 8.81024059442498 8.46835840001302 8.47816061653312 8.08517839968893 8.32081062047867 8.39800868315238 7.94509722493596 8.15357607680033 8.2221289504107 7.67074534734894 8.29920247541746 8.55329175176547 7.9242670650788 8.26432748086406 0.150695444607303 0.155904526954300 0.147398168674210 0.150001469282635 0.150221058025913 0.147568185014840 0.154252679101231 0.151744463511575 0.163267732348254 0.158140265284911 0.15339433497839 0.150386263551326 0.150878962349119 0.155303688807663 0.171871728353670 0.148978064738871 0.158942579951058 0.166806974183383 0.149084977391265 2 0|2 /|- 7675321 7676054 7675703 7675160 7677577 - gene protein_coding_gene FALSE TRUE AT2G17640.1 AtSerat3;1 (SERINE ACETYLTRANSFERASE-106); acetyltransferase/ serine O-acetyltransferase Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation. Identical to Serine acetyltransferase 2 (EC 2.3.1.30) (AtSAT-2) (AtSERAT3;1) (SAT2) [Arabidopsis Thaliana] (GB:Q8S895;GB:Q9STB0;GB:Q9ZPJ4); similar to ATSERAT3,2 (SERINE ACETYLTRANSFERASE 3,2), acetyltransferase/ serine O-acetyltransferase [Arabidopsis thaliana] (TAIR:AT4G35640.1); similar to Putative serine acetyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAN05506.1); similar to Os03g0133900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048879.1); contains InterPro domain Serine acetyltransferase, N-terminal; (InterPro:IPR010493); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Serine O-acetyltransferase; (InterPro:IPR005881); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) 0.102205842357036 1.35530068103964 0.210641662280246 1 1.63756420185483 16.7257589343280 0.102205842357036 0.0482497183674076
AT3G21055_at 12.9631308870911 13.1214949432684 12.6711534417272 12.6679107453107 12.8909270808266 12.8776384526700 13.2884848385953 13.3720861791543 13.7978491358546 13.6382459771082 14.0049219203446 14.1059786263927 13.6229148746162 13.9073300816087 14.0156481309694 13.835818837708 13.5037813993995 14.0222292935420 13.5448720246376 0.0654260298592359 0.0654573907266836 0.0736876086559873 0.0682281159247833 0.0663982819792566 0.0726908231851781 0.0655008393834146 0.0657625054225428 0.0686109481398269 0.0634669742563704 0.0637923260784655 0.0634669742563704 0.064311431179758 0.0659979868862916 0.065438495660105 0.0634669742563704 0.0688214871519246 0.0634669742563704 0.0648978902257033 3 3 - 7376767 7377054 7376886.909 7376641 7377192 - gene protein_coding_gene FALSE TRUE AT3G21055.1 PSBTN (photosystem II subunit T) Encodes photosystem II 5 kD protein subunit PSII-T. This is a nuclear-encoded gene (PsbTn) which also has a plastid-encoded paralog (PsbTc). Identical to Photosystem II 5 kDa protein, chloroplast precursor (PSII-T) (Nuclear encoded psbT) (PsbTn) (PSBT) [Arabidopsis Thaliana] (GB:Q39195;GB:Q41925;GB:Q9LJC7); similar to photosystem II 5 kD protein [Arabidopsis thaliana] (TAIR:AT1G51400.1); similar to unknown [Brassica rapa] (GB:ABD91572.1) -0.0961931327605665 -1.35519505254460 0.210673961015728 1 1.63744255751811 26.7504284584668 -0.0961931327605665 0.0310802809282759
AT2G18915_at 6.42222696671871 6.57731116142794 6.11868918049603 6.77573883344006 6.44555400113851 6.44228581894826 6.2552440282749 6.59578658055466 6.07540993570387 6.08936586726629 5.99367807749038 6.26544589697488 6.86055153290309 6.7336509592009 6.29798096929494 6.75879225065026 6.57061951598644 5.97875259152403 6.16427296776265 0.212013379051459 0.209759516138742 0.210703838563016 0.210920291742971 0.218368047702753 0.206414042819086 0.214923220351207 0.204089426240964 0.214070748311255 0.211668601426715 0.205718650105960 0.207458924404756 0.204547962017577 0.206571293511842 0.203817965897721 0.212580842914338 0.20706142389386 0.215574501565909 0.217104359699542 2 2 - 8201883 8202431 8202207.818 8201654 8204565 - gene protein_coding_gene FALSE TRUE AT2G18915.1|AT2G18915.2 LKP2 (LOV KELCH PROTEIN 2); ubiquitin-protein ligase encodes a member of F-box proteins that includes two other proteins in Arabidopsis (ZTL and FKF1). These proteins contain a unique structure containing a PAS domain at their N-terminus, an F-box motif, and 6 kelch repeats at their C-terminus. Overexpression results in arrhythmic phenotypes for a number of circadian clock outputs in both constant light and constant darkness, long hypocotyls under multiple fluences of both red and blue light, and a loss of photoperiodic control of flowering time. Although this the expression of this gene itself is not regulated by circadian clock, it physically interacts with Dof transcription factors that are transcriptionally regulated by circadian rhythm. LKP2 interacts with Di19, CO/COL family proteins. Identical to Adagio protein 2 (LOV kelch protein 2) (Flavin-binding kelch repeat F- box protein 1-like protein 1) (FKF1-like protein 1) (F-box only protein 2c) (FBX2c) (ADO2) [Arabidopsis Thaliana] (GB:Q8W420;GB:Q9C5S6); similar to ZTL (ZEITLUPE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G57360.1); similar to FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G68050.1); similar to ZTL [Ipomoea nil] (GB:ABC25060.2); similar to ZEITLUPE [Mesembryanthemum crystallinum] (GB:AAQ73527.1); similar to Cyclin-like F-box; Galactose oxidase, central [Medicago truncatula] (GB:ABE90708.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Kelch repeat; (InterPro:IPR006652)|Identical to Adagio protein 2 (LOV kelch protein 2) (Flavin-binding kelch repeat F- box protein 1-like protein 1) (FKF1-like protein 1) (F-box only protein 2c) (FBX2c) (ADO2) [Arabidopsis Thaliana] (GB:Q8W420;GB:Q9C5S6); similar to ZTL (ZEITLUPE), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G57360.1); similar to FKF1 (FLAVIN-BINDING KELCH DOMAIN F BOX PROTEIN), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G68050.1); similar to ZTL [Ipomoea nil] (GB:ABC25060.2); similar to ZEITLUPE [Mesembryanthemum crystallinum] (GB:AAQ73527.1); similar to Cyclin-like F-box; Galactose oxidase, central [Medicago truncatula] (GB:ABE90708.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.152837912468588 1.35447945887375 0.210892884739539 1 1.63661861592676 12.7251630202902 0.152837912468588 0.130853274873450
AT4G17050_at 9.09898149407768 9.293127480133 9.77330042509701 9.51990743917929 9.98561023062806 9.73727111630538 9.71651809954135 9.8320010725321 9.23287641422695 9.47237435413675 9.74124479803183 9.44925886379284 9.97426978356495 8.05682811047528 8.5982659227732 9.24939659563793 9.5812530818172 9.45472055570188 9.206389064044 0.175354775830123 0.183973780218717 0.191472253808508 0.198365139819175 0.175354775830123 0.180891069575873 0.175354775830123 0.175354775830123 0.202331964051353 0.175354775830123 0.204441787955260 0.175354775830123 0.175354775830123 0.363289724932689 0.220001485380423 0.189182603285133 0.201279001685339 0.196282411206862 0.179610687649398 4 4 + 9591248 9591627 9591398.5 9589586 9592606 + gene protein_coding_gene FALSE TRUE AT4G17050.1 transcription factor similar to protein of unknown function DUF861, cupin_3 [Deinococcus geothermalis DSM 11300] (GB:YP_594116.1); similar to Os07g0495000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059692.1); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin 2, conserved barrel; (InterPro:IPR013096) 0.114070018034941 1.35363001684594 0.21115301019163 1 1.63564090732602 18.9031069987419 0.114070018034941 0.0727878082708041
AT1G60440_at 7.7227821398118 8.12462975207201 8.49893382690941 8.44940684450894 8.74921351252209 8.40003613210876 8.14902379632905 8.00169288130595 7.75854444481107 7.74395220963132 7.77205182393458 7.44380683917828 7.36550796201233 7.7843011534136 6.95854702892346 7.82519448217568 7.39424939873683 7.46545694876296 7.80694976226927 0.168503564626133 0.165455764754402 0.172308418414663 0.173606186047386 0.165592106740034 0.178006844573792 0.169359518995871 0.163496913064808 0.180384376914309 0.166917195986562 0.163135458639819 0.165179568285519 0.172012630973129 0.164493678389802 0.179212690625439 0.165907674791924 0.173685168641465 0.171852367396241 0.165827626123599 1 0|1 /|- 22270363 22270947 22270559.333 22270171 22272908 - gene protein_coding_gene FALSE TRUE AT1G60440.1 ATCOAA/ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase The gene AT1G60440 encodes pantothenate kinase 1. Its molecular function was shown to phosphorylate pantothenate to form 4?-phosphopantothenate. Identical to Pantothenate kinase 1 (EC 2.7.1.33) (Pantothenic acid kinase 1) (AtCoaA) (COAA) [Arabidopsis Thaliana] (GB:O80765;GB:Q66GL8); similar to ATPANK2 (PANTOTHENATE KINASE 2), pantothenate kinase [Arabidopsis thaliana] (TAIR:AT4G32180.2); similar to partially similar to pantothenate kinase family protein [Solanum lycopersicum] (GB:BAD95798.1); contains InterPro domain Fumble; (InterPro:IPR011602); contains InterPro domain Eukaryotic pantothenate kinase; (InterPro:IPR004567) 0.128094709518797 1.35288276657164 0.211382068651904 1 1.63478113348934 15.8974423241357 0.128094709518797 0.0959736993358526
AT4G17245_at 6.48506037677233 7.42720186187567 7.18308046266345 7.501520227141 7.14494721872151 8.55896919849747 6.14453472149166 8.1379198403561 8.13799869358433 8.3053496159481 9.08659133094439 8.34501995689331 9.32496877500236 9.0687682627088 7.43644668107573 8.6596197880736 9.11034509150774 7.9811785737465 8.46784010147493 0.189596412482766 0.186470784710497 0.186344229501689 0.186705582238487 0.176837445423976 0.177397173758723 0.181934635895733 0.18406912168332 0.185786844804536 0.180426507775752 0.180828029591116 0.175853741298585 0.183084671509878 0.180238818174789 0.180310612975955 0.178741782579546 0.179442373277230 0.182186838908407 0.180346513630873 4 4 + 9669428 9669869 9669653.909 9669377 9670017 + gene protein_coding_gene FALSE TRUE AT4G17245.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G47610.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] (GB:ABD64996.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.435668956895095 1.35177979965454 0.211720555781441 1 1.63351261202880 15.7880776273548 0.435668956895095 0.456617670944922
AT4G27500_at 9.72754610617023 9.91491457930936 9.72287975056153 9.80188335357834 9.8876738363151 9.29986016356375 9.07116717411928 9.20228504513707 9.34842049994184 9.19543122470497 9.573059985274 9.70132406596137 9.29755507637053 9.35592135879914 9.1201379049175 9.2906720786328 8.87324261573004 9.2774211968646 9.16278291370973 0.122606394784645 0.121006404898799 0.120448614352433 0.116820862129227 0.121771235393594 0.121698816682013 0.117102546944819 0.116820862129227 0.130235023985136 0.120063708689887 0.120675570639128 0.118885694215339 0.116820862129227 0.123859474771900 0.119391699129344 0.117049034032912 0.122599498289833 0.129138198272107 0.116820862129227 4 4 + 13745219 13745881 13745579.091 13743116 13746217 + gene protein_coding_gene FALSE TRUE AT4G27500.1 PPI1 (PROTON PUMP INTERACTOR 1) interacts with H+-ATPase, and regulates its activity similar to PPI2 (PROTON PUMP INTERACTOR 2) [Arabidopsis thaliana] (TAIR:AT3G15340.1); similar to Chorismate mutase; Prefoldin; tRNA-binding arm [Medicago truncatula] (GB:ABE89096.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.137358977843631 1.35074430013176 0.212038760425178 1 1.63232226487997 18.8518820834798 0.137358977843631 0.110004157424783
AT2G03140_at 6.53027511544215 6.68794503675594 6.95482595106434 7.18470037440285 7.33085133160698 6.44982196266058 7.40382292962627 7.10810384338709 6.35836261153458 6.95855306746452 6.10286092494397 6.29223905397636 6.3662635037117 6.3306858511262 6.01440849164985 6.78673427445549 6.04466602230694 5.97555422250124 6.63012579492735 0.206216161204907 0.196392384042436 0.204187435442080 0.205523995059292 0.198517275258370 0.204734839687612 0.199807886527976 0.195123075159085 0.217202072619829 0.198460812544656 0.198216191982577 0.195514239131756 0.200431582303799 0.200202704814978 0.198132595849430 0.203723292805237 0.209489310230938 0.205615925462921 0.205130474850599 2 2 + 948596 949271 948897.455 941997 950031 + gene protein_coding_gene FALSE TRUE AT2G03140.1 CAAX amino terminal protease family protein similar to late embryogenesis abundant protein, putative / LEA protein, putative [Arabidopsis thaliana] (TAIR:AT3G50790.1); similar to Embryogenesis-associated protein EMB8 (GB:Q40863); similar to Os09g0436800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063262.1); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.181162053963677 -1.35014527048514 0.212223026632875 1 1.63163391365574 13.4003885019813 -0.181162053963677 0.167904461048089
AT1G02000_at 4.69370903382276 4.8962803820693 4.38109043228123 4.5181319050716 5.2613980311908 4.76213722246044 6.37088610390091 5.45055457389439 5.1727160318048 5.0017887381722 5.40126866524938 4.89567872378408 5.13172501475036 5.42151123083806 5.07741718310771 5.47678839353367 5.21688160038484 5.28311275320695 4.84886073720372 0.228925234431226 0.216679672176062 0.225789135800464 0.220266402034281 0.217799234704408 0.231476707108764 0.231547848209093 0.22626734311114 0.232514462462912 0.216679672176062 0.224161583925929 0.22779539800114 0.222013965019187 0.221992369265600 0.225004289967585 0.220975853111316 0.232114026041785 0.218275013409578 0.225689034401302 1 1 + 346773 347208 346992.545 345812 347592 + gene protein_coding_gene FALSE TRUE AT1G02000.1 GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5), catalytic [Arabidopsis thaliana] (TAIR:AT4G12250.1); similar to GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4), catalytic [Arabidopsis thaliana] (TAIR:AT2G45310.1); similar to NAD-dependent epimerase/dehydratase; TonB box, N-terminal [Medicago truncatula] (GB:ABE85249.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) -0.195954341228761 -1.35007443222585 0.212244826098595 1 1.63155252512265 10.1646916845867 -0.195954341228761 0.186070946241445
AT1G05460_at 5.22583646071304 4.68563934877022 4.82771541418683 4.49236273814578 4.79186883260696 4.64991189670854 4.91210274979801 4.54342533995245 6.11169865207921 5.89568578471997 5.89665825675344 6.24703086898967 5.64871793947666 5.72876923367925 5.79681478286642 5.99361096784652 5.9815664249358 5.78237587661315 6.09985620605323 0.208926375895973 0.200772291638854 0.207841326604166 0.204094923696970 0.202876100225755 0.201759725868602 0.198931171663476 0.198495811528675 0.203540019656277 0.205997157034663 0.210414937157527 0.202700659298819 0.219617772925338 0.209003912829443 0.202399061834384 0.198495811528675 0.201415143180453 0.198909284219030 0.204874068122026 1 1 - 1601434 1601921 1601684.455 1601147 1605026 - gene protein_coding_gene FALSE TRUE AT1G05460.1 SDE3 (SILENCING DEFECTIVE) Encodes a protein with similarity to RNA helicases. Mutants are defective in post-transcriptional gene silencing. Identical to Probable RNA helicase SDE3 (EC 3.6.1.-) (Silencing defective protein 3) (SDE3) [Arabidopsis Thaliana] (GB:Q8GYD9;GB:Q94KS1;GB:Q9LR48); similar to LBA1/UPF1 (LOW-LEVEL BETA-AMYLASE 1), RNA helicase [Arabidopsis thaliana] (TAIR:AT5G47010.1); similar to Os03g0160400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049037.1); similar to Mov10, Moloney leukemia virus 10, homolog [Gallus gallus] (GB:NP_001012861.1); similar to hypothetical protein LOC523206 [Bos taurus] (GB:NP_001069307.1); contains domain DNA2/NAM7 HELICASE FAMILY (PTHR10887); contains domain MOLONEY LEUKEMIA VIRUS 10 HOMOLOG MOV-10 (PTHR10887:SF17); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.151295045726045 -1.3494468782049 0.212438030646521 1 1.63083162159045 10.7262028100332 -0.151295045726045 0.129542616102475
AT3G55620_at 9.27402017503669 9.37956289598912 9.48999248720895 9.34437847523075 9.40155531457478 9.35280810842767 9.38120880509226 9.45134524604978 8.5075225808453 8.78048900612851 8.75046788158176 9.104189326379 9.07916555666753 8.89012463068565 8.8184500834808 8.84567992393023 8.75334214701708 8.69177122562368 8.80857965176629 0.122298245663109 0.122186821777507 0.122165067965096 0.125867908079301 0.124721424986517 0.124392579042623 0.121091170577034 0.121457700715591 0.131796953997802 0.122245186855240 0.120727171723141 0.119183075577065 0.118045312914243 0.121306627026331 0.123539191333665 0.118472491207980 0.118045312914243 0.135476874258045 0.118045312914243 3 0|3 /|+ 20646042 20647187 20646829 20645181 20647485 + gene protein_coding_gene FALSE TRUE AT3G55620.1 EMB1624 (EMBRYO DEFECTIVE 1624); translation initiation factor similar to eukaryotic translation initiation factor 6, putative / eIF-6, putative [Arabidopsis thaliana] (TAIR:AT2G39820.1); similar to Os07g0639800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060417.1); similar to putative eukaryotic translation initiation factor 6 [Trifolium pratense] (GB:BAE71264.1); contains InterPro domain Translation initiation factor IF6; (InterPro:IPR002769) 0.096717208246297 1.34855982891641 0.212711382576157 1 1.62981297539156 18.1671152350350 0.096717208246297 0.0344540131389426
AT3G53920_at 9.41004829745302 9.11372555376529 9.42414674003718 9.16204604072373 9.61367273059242 9.30996874543028 9.88645223760296 9.54620701160988 9.60390716430707 9.8554093232421 9.62227194522872 9.57169444809944 9.73281617724198 9.68663278868225 9.31985078175032 9.82479425739206 9.82890606292005 9.561491904175 9.9363563199526 0.0765698121694857 0.0777740632296661 0.0765503178989144 0.076403351375642 0.0769508197018549 0.0838402677913818 0.0770083594893315 0.0764597045774297 0.0842784868167682 0.0788317456264987 0.0758541048447355 0.0750869455114317 0.0780062167620254 0.0757115937451895 0.0763948637569588 0.0742913685247253 0.0777317653335498 0.077525379551467 0.0776610157926089 3 3|0 -|/ 19972032 19972840 19972361.9 19971847 19974927 - gene protein_coding_gene FALSE TRUE AT3G53920.1 SIGC (RNA polymerase sigma subunit C); DNA binding / DNA-directed RNA polymerase/ transcription factor Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids. similar to SIGB (SIGMA FACTOR B), DNA binding / DNA-directed RNA polymerase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G08540.1); similar to sigma factor 3 [Sinapis alba] (GB:CAB83107.1); contains InterPro domain Sigma-70 region 4; (InterPro:IPR007630); contains InterPro domain Sigma-70 region 3; (InterPro:IPR007624); contains InterPro domain Sigma-70 factor; (InterPro:IPR000943); contains InterPro domain Sigma-70 region 2; (InterPro:IPR007627); contains InterPro domain Sigma factor, region 2; (InterPro:IPR013325); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) -0.133325008863127 -1.34837359960168 0.212768808972401 1 1.62959917082507 19.1543408687453 -0.133325008863127 0.104480722383930
AT3G48720_at 9.42597975293375 9.65204357280683 9.6765641479549 9.8541600811246 10.4916846236278 10.2862866459530 10.5023456643873 10.6207397365947 11.1906164936322 10.6920377912978 11.4947332388120 11.3472622764696 11.2218090373308 11.2698744294824 10.812442079157 10.7223040530865 10.2924810725473 11.1903854467223 10.6747199289872 0.0741975501910775 0.073318627428823 0.0796560846057073 0.0769837302643227 0.0744280339100059 0.0795356289090873 0.0784170203780887 0.074512477888938 0.0818236782468833 0.073318627428823 0.0760318416561474 0.0733551862012452 0.0741029158637588 0.077555902580779 0.0789651749980125 0.0747707881051541 0.0773433039665015 0.073318627428823 0.0755328436897887 3 3 + 18059756 18060068 18059930.182 18057308 18060448 + gene protein_coding_gene FALSE TRUE AT3G48720.1 transferase family protein similar to transferase family protein [Arabidopsis thaliana] (TAIR:AT5G63560.1); similar to Os11g0507200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067952.1); similar to putative hydroxyanthranilate hydroxycinnamoyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD88037.1); contains InterPro domain Transferase; (InterPro:IPR003480) 0.109175037939843 1.34808802350286 0.212856896101378 1 1.62927134447435 21.0119102909262 0.109175037939843 0.0644847869365055
AT2G27350_at 7.48396011669585 7.62670583937327 8.18853680736744 7.96923233133673 7.82451001310526 7.21993904871423 7.47651625084426 7.461572600548 6.97028470178552 7.42400432164827 7.06399758938547 7.37410740167999 7.32020554671126 7.42070965297352 7.23709472974822 7.74384858364435 6.84227595628279 7.36977063058712 7.52098464546924 0.160249959861505 0.163989638556365 0.159916400059686 0.162069396806232 0.164385809653625 0.170420038761481 0.16502405388389 0.160460770714863 0.173295316835211 0.165984949945153 0.155316343079507 0.153835314290745 0.154090650426786 0.153889690910995 0.155481786493844 0.155111748862073 0.178227630266892 0.168215464274040 0.162974097038296 2 2|0 -|/ 11706882 11707708 11707363.111 11706627 11711326 - gene protein_coding_gene FALSE TRUE AT2G27350.1|AT2G27350.2|AT2G27350.3|AT2G27350.4|AT2G27350.5 OTU-like cysteine protease family protein similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.2); similar to PREDICTED: similar to CG6091-PA, isoform A isoform 5 [Canis familiaris] (GB:XP_863475.1); similar to Os04g0414100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052752.1); similar to OSIGBa0137L20.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66475.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.2); similar to PREDICTED: similar to CG6091-PA, isoform A isoform 5 [Canis familiaris] (GB:XP_863475.1); similar to Os04g0414100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052752.1); similar to OSIGBa0137L20.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66475.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) 0.139887943337244 1.34788861192066 0.212918423930604 1 1.62904245589399 14.9571678681703 0.139887943337244 0.114032408353882
AT3G13200_at 9.1036395346739 9.42753000575885 9.13449072430098 9.15290426086356 9.5592752707986 9.26618946070214 8.89010814396522 9.15989421758425 8.99211051536299 8.98948528180795 9.42828230190935 9.20544549725988 9.15592278769734 9.44201606201502 9.05421327665074 9.21519102965001 8.51030104194966 8.90798410297311 9.02332586854908 0.158845042656670 0.152310293551892 0.152994232585900 0.148400309881662 0.153405642283397 0.162838917315489 0.14947443081732 0.149780756149628 0.160234054216978 0.152947075528029 0.155277913995884 0.154404591511726 0.153423375510195 0.166498948608358 0.155955856548612 0.154268072571442 0.169464705601783 0.161323090371994 0.165382663923857 3 3|0 +|/ 4242349 4243945 4243412.7 4242132 4244152 + gene protein_coding_gene FALSE TRUE AT3G13200.1 Cwf15 / Cwc15 cell cycle control family protein similar to Cwf15/Cwc15 cell cycle control protein [Medicago truncatula] (GB:ABE80889.1); contains InterPro domain Cwf15/Cwc15 cell cycle control protein; (InterPro:IPR006973) 0.123100455471951 1.34776006243801 0.212958095544029 1 1.62889491533077 18.2700339862075 0.123100455471951 0.0889049557118887
ATCG00150_at 7.73193255809934 8.59434562488395 8.53546016726313 8.49433196141947 8.03607768358631 6.88735799792511 8.41613843370504 8.586632540689 10.0608340115229 10.1609118258788 10.3879359519137 10.8857959641052 9.81951957444463 9.91273873878443 9.26901272997176 10.2179800054228 8.98695061236246 10.0331321348973 10.0635806863018 0.210368101889401 0.205877820319313 0.203209799544089 0.206828337561481 0.201531198508852 0.223883379348671 0.201802125024530 0.196222737046297 0.212774678564456 0.205210005404132 0.205781227911402 0.216257117065010 0.20844653862786 0.215045328272561 0.203586243884708 0.200007121856635 0.212524438486636 0.201160989339715 0.197358002871471 C C - 14228 14522 14378.727 14021 14770 - gene protein_coding_gene FALSE TRUE ATCG00150.1 Encodes a subunit of ATPase complex CF0, which is a proton channel that supplies the proton motive force to drive ATP synthesis by CF1 portion of the complex. Identical to Chloroplast ATP synthase a chain precursor (EC 3.6.3.14) (ATPase subunit IV) (atpI) [Arabidopsis Thaliana] (GB:P56758); similar to ATPase subunit 6, putative [Arabidopsis thaliana] (TAIR:AT2G07741.1); similar to ATP synthase CF0 subunit IV [Vitis vinifera] (GB:YP_567064.1); contains InterPro domain ATPase, F0 complex, subunit A; (InterPro:IPR000568) -0.249965482021268 -1.34685617184766 0.213237223535774 1 1.62785773529448 18.1774056485576 -0.249965482021268 0.250425883672828
AT2G21380_at 7.85984684265784 8.06850720855306 7.69393117576688 7.25747747970155 8.17758990204316 8.18043762841059 8.13616245430623 8.00855702360242 8.22397661213062 8.1629483291827 9.0778104082336 8.80676173184056 8.35351448486318 8.58642643360197 8.73153822203335 8.43321275650688 8.22486300155515 8.47366524799316 8.06929933726092 0.161105578963754 0.156739730098491 0.166488693343329 0.170425311227298 0.16186170846993 0.159630575287830 0.159847004461022 0.156739730098491 0.170339593759357 0.165993087607393 0.160356729338057 0.156739730098491 0.161820538005909 0.175109385960257 0.16540808851373 0.157991054767636 0.176523922739652 0.169230116349438 0.157361086688099 2 2|0 +|/ 9154839 9155924 9155315.8 9148711 9156389 + gene protein_coding_gene FALSE TRUE AT2G21380.1 kinesin motor protein-related similar to kinesin-related protein (MKRP1) [Arabidopsis thaliana] (TAIR:AT1G21730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to kinesin-related protein (MKRP2) [Arabidopsis thaliana] (TAIR:AT4G39050.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); similar to kinesin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAG13527.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.121494970252196 1.34592780038809 0.213524237131578 1 1.6267929123395 16.2918381120568 0.121494970252196 0.086583077801463
AT4G29810_at 10.1340741357161 10.3245017642667 10.3618979441940 10.1210963247063 9.59071566762491 9.55539249642973 9.41008661465884 9.48196861887452 9.85167740392708 8.87567572981642 8.98337045089152 9.29682875147606 8.96068230870235 9.06192030786171 8.78308643150642 8.724339407577 8.24747533130587 9.43266178961394 8.91579486073104 0.134628883163237 0.134652110823964 0.139385838268298 0.141391207283216 0.135653222578241 0.133622286168732 0.134627446095527 0.138586609070627 0.139219235794939 0.146959177063327 0.138201382580228 0.133299758882113 0.138270905031512 0.137067270543756 0.140474161223290 0.14226015201318 0.159765095846105 0.137987724242910 0.142654032902995 4 4|0 -|/ 14593311 14594075 14593609.9 14593045 14595298 - gene protein_coding_gene FALSE TRUE AT4G29810.1|AT4G29810.2 ATMKK2 (MAP KINASE KINASE 2); MAP kinase kinase/ kinase encodes a MAP kinase kinase 2 that regulates MPK6 and MPK4 in response to cold and salt stresses. Co-expression with MEKK1 in protoplasts activated MKK2 activity, suggesting that MEKK1 may be a regulator of MKK2. Identical to Mitogen-activated protein kinase kinase 2 (EC 2.7.12.2) (MAP kinase kinase 2) (AtMKK2) (AtMAP2Kbeta) (MKK2) [Arabidopsis Thaliana] (GB:Q9S7U9;GB:O80395); similar to MEK1 (mitogen-activated protein kinase kinase 1), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26070.3); similar to double MYC-tagged mitogen activated protein kinase kinase 2 [synthetic construct] (GB:ABF55662.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to MEK1 (mitogen-activated protein kinase kinase 1), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G26070.3); similar to double MYC-tagged mitogen activated protein kinase kinase 2 [synthetic construct] (GB:ABF55662.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.104234621299156 -1.34410218852559 0.214089603566644 1 1.6247002987981 18.9478058269047 -0.104234621299156 0.0549057616439049
AT3G25500_at 5.33019691138305 5.73767159879857 4.18908291297518 3.90612330949016 5.62666829595458 5.51740879491191 6.82997220007823 6.09009376117586 7.09779757367643 6.14072762526871 8.37176243530644 7.59152544658368 7.49122670208664 7.7312513924694 8.00838725229393 6.54621119410736 6.2375775199472 7.64392825543945 6.57992692464317 0.284185899259979 0.287301086911185 0.292208471845168 0.280793843421673 0.286091958100461 0.31665390081039 0.274215846809214 0.283234280516002 0.309820039769009 0.278820005203294 0.286443190102523 0.274215846809214 0.274215846809214 0.286383968432875 0.28703375009081 0.274215846809214 0.289054310208187 0.274215846809214 0.274215846809214 3 3 - 9252639 9253097 9252977.5 9252330 9256239 - gene protein_coding_gene FALSE TRUE AT3G25500.1 AFH1 (FORMIN HOMOLOGY 1); actin binding Poly-L-proline-containing (PLP) protein that form part of the signal-transduction cascade that leads to rearrangement of the actin cytoskeleton. AFH1 is a nonprocessive formin that moves from the barbered end to the side of an actin filament after the nucleation event. similar to formin homology 2 domain-containing protein / FH2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43800.1); similar to putative FH protein NFH2 [Oryza sativa (japonica cultivar-group)] (GB:BAB86073.1); similar to FH protein NFH2 [Nicotiana tabacum] (GB:AAF24497.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.170289861304739 -1.34349638204306 0.214277495917699 1 1.62400627998755 12.4328444644170 -0.170289861304739 0.155312053668112
AT3G11960_at 6.51526970268345 6.60290626025628 6.25636784145999 6.51810991667244 7.24812430580662 6.7635127872703 6.25637098349107 6.06482631092469 6.1347627511967 6.10270654374236 6.20494262633993 6.15965447129454 5.79698559631572 6.39198008413813 6.03341717581146 6.71526170215277 6.07259403334527 5.84303802080797 6.44228451562523 0.220092499078424 0.211323465080175 0.216160738726171 0.210408587419984 0.210818158694685 0.211218215944066 0.207189527360967 0.220193921125504 0.217506041592936 0.210256723801945 0.212638843025437 0.206993022647087 0.208083795306752 0.21518099828677 0.216072429369484 0.212036327133583 0.231144534075324 0.217012299643358 0.210274773291995 3 3|0 +|/ 3791918 3793142 3792632.8 3786392 3793663 + gene protein_coding_gene FALSE TRUE AT3G11960.1|AT3G11960.2 cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to putative Splicing factor 3B subunit 3 [Oryza sativa (japonica cultivar-group)] (GB:BAC79787.1); similar to Os07g0203700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059140.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871)|similar to DDB1A (UV-damaged DNA-binding protein 1A), DNA binding [Arabidopsis thaliana] (TAIR:AT4G05420.1); similar to putative Splicing factor 3B subunit 3 [Oryza sativa (japonica cultivar-group)] (GB:BAC79787.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain CPSF A subunit, C-terminal; (InterPro:IPR004871) 0.131167504358878 1.34309386412311 0.214402415742529 1 1.62354525812037 12.7175954222192 0.131167504358878 0.102047499726094
AT2G44050_at 7.45915969130023 7.23110173271994 6.78158301733183 7.05352136871557 7.3381488908041 7.00343129435251 7.83169014237312 7.79103469881033 7.1590940069593 6.91235164150568 7.66603470770092 7.98896699322494 7.53252491325358 8.02283645840522 8.39669719322571 7.84182231971994 7.81742562375575 7.4992670920474 7.14330771997375 0.151008893431308 0.145364090291485 0.155652338861855 0.150690136242592 0.149787883392362 0.149243145120261 0.153567035645441 0.149686148241942 0.157726870221299 0.161416218084486 0.145364090291485 0.146141913758092 0.152580620115229 0.146650837118748 0.146336158852851 0.155634292342059 0.166039589344949 0.155216132431635 0.149004654698984 2 0|2 /|+ 18231620 18232750 18232056.167 18231327 18233236 + gene protein_coding_gene FALSE TRUE AT2G44050.1 COS1 (COI1 SUPPRESSOR1); 6,7-dimethyl-8-ribityllumazine synthase 6,7-dimethyl-8-ribityllumazine synthase / DMRL synthase / lumazine synthase / riboflavin synthase [Arabidopsis thaliana]. Identical to 6,7-dimethyl-8-ribityllumazine synthase, chloroplast precursor (EC 2.5.1.9) (DMRL synthase) (Lumazine synthase) [Arabidopsis Thaliana] (GB:O80575); similar to 6,7-dimethyl-8-ribityllumazine synthase precursor [Nicotiana tabacum] (GB:AAD44809.1); contains InterPro domain 6,7-dimethyl-8-ribityllumazine synthase; (InterPro:IPR002180) 0.120018516510267 1.34216667973814 0.214690400496342 1 1.62248363816996 14.7698495389574 0.120018516510267 0.0847172194123307
AT2G19130_at 8.46982927761689 8.79362139345596 8.80389143898227 8.72122981244213 8.65988951292425 8.53009186124797 7.01151453772065 7.28567541646133 7.97564506260618 7.83156958781335 7.3583256044066 7.4116468658759 7.18640872268888 7.28698758154352 7.1144475007135 7.06346761437475 7.30687243026856 7.36570721670226 7.64814389538603 0.177657128588254 0.181133478893978 0.183287744722945 0.179316602282290 0.186664796448953 0.186709239133169 0.182399016080495 0.183346970024775 0.18577237888831 0.187651960290292 0.192933712102775 0.180173140169014 0.181802947404487 0.183732498282660 0.193382803370291 0.185820118541997 0.191729605666786 0.197427999315348 0.180848487443511 2 2 + 8302786 8303333 8303115.727 8300764 8303357 + gene protein_coding_gene FALSE TRUE AT2G19130.1 S-locus lectin protein kinase family protein similar to ARK3 (Arabidopsis Receptor Kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT4G21380.1); similar to S-domain receptor-like protein kinase [Zea mays] (GB:CAA09029.1); similar to putative S-receptor kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD82381.1); similar to putative S-receptor kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83324.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain N/apple PAN; (InterPro:IPR003014); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.115947796777671 1.34034490087477 0.215257210156343 1 1.62039903918578 15.8245608016932 0.115947796777671 0.078102293547518
AT1G31190_at 9.03945738931213 9.045725499039 9.1577353798659 8.93271414679244 8.8780157846385 8.27103218081887 9.85348186495521 9.61365984966464 8.72573669032101 9.2656928998559 9.42990117988271 9.25837266627422 9.20322963884217 9.1929956346753 9.21966586723982 9.54462635505922 9.145497623522 9.10099031665792 8.9170375043987 0.126509528665411 0.127551391369221 0.126326442863811 0.123562154918257 0.123981332390766 0.141953802565427 0.124198733455816 0.128554211959923 0.139775705485300 0.123213449910627 0.127885876343583 0.123828859445212 0.131044687015569 0.126662530975619 0.121611297576174 0.126246394557557 0.134411902185564 0.130189702905434 0.130028279324279 1 1|0 +|/ 11145759 11146695 11146101.667 11144753 11146911 + gene protein_coding_gene FALSE TRUE AT1G31190.1 inositol monophosphatase family protein similar to VTC4, 3'(2'),5'-bisphosphate nucleotidase/ inositol or phosphatidylinositol phosphatase [Arabidopsis thaliana] (TAIR:AT3G02870.1); similar to inositol monophosphatase [Chlamydomonas incerta] (GB:AAW82030.1); similar to Os02g0169900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046024.1); contains InterPro domain Inositol monophosphatase; (InterPro:IPR000760) -0.142892949484924 -1.33973322687569 0.215447806506677 1 1.61969951611912 18.2146772327830 -0.142892949484924 0.119472600773446
AT1G53530_at 5.38162765257328 5.22868437334557 4.68695766124503 4.84339663463463 5.1806601931245 5.14543051848117 4.76478969948785 5.1613020464676 4.78875221321821 4.025183567515 4.29454211340306 4.38138040097512 3.77352320486236 4.44925281024511 4.65608458768446 4.09852016040155 4.32332164661936 4.47752472181406 4.29321528713743 0.272292499642016 0.267859392495414 0.268177932710796 0.281306951290669 0.266758565079194 0.266758565079194 0.279577473260035 0.277935077925804 0.279417769428396 0.273587653881365 0.269884343958623 0.269013050030539 0.271314966892202 0.282890722074278 0.269446223683011 0.275973639781106 0.281832270684336 0.269993737259067 0.266758565079194 1 1|0 +|/ 19981983 19983265 19982278.222 19981814 19983752 + gene protein_coding_gene FALSE TRUE AT1G53530.1|AT1G53530.2 signal peptidase I family protein similar to peptidase [Arabidopsis thaliana] (TAIR:AT1G29960.1); similar to Os11g0620000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068291.1); similar to signal peptidase I family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94772.2); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) -0.116135670651741 -1.33914932226406 0.215629884375775 1 1.61903193590764 9.3870156282737 -0.116135670651741 0.0786072061691174
AT4G01960_at 7.07522923006174 7.75667465391635 6.82305358705719 7.62390861602263 8.05267046563551 7.03989894788861 6.63557756113926 6.57775977679677 7.11578696698262 6.66659365477163 7.27420492924078 6.85264344656501 6.95563698770135 7.37915403428722 7.06379375085443 7.14171628527885 6.49637838325116 6.80879684109268 6.82652359842953 0.246386017532054 0.229361831307457 0.234152256221547 0.228579124328188 0.230366115302223 0.236608206580846 0.235077055145563 0.238294635902845 0.247079580528701 0.224239761652842 0.231753903168594 0.226478219342242 0.234623048249912 0.235851444271186 0.229806682792328 0.229739564786166 0.232290394115290 0.244534542083619 0.228153362781449 4 4|0 -|/ 851577 852247 851852.7 851210 853139 - gene protein_coding_gene FALSE TRUE AT4G01960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02380.1); similar to hypothetical protein MtrDRAFT_AC153352g19v1 [Medicago truncatula] (GB:ABE87668.1) 0.250239220447564 1.33710794155825 0.216267476871519 1 1.61669944151629 14.1311842659874 0.250239220447564 0.252848539325848
AT1G04820_at 7.30142253278591 7.00816798760926 6.40087923374238 6.32422012191868 6.33990828794334 6.11852759157575 7.19676948652667 6.99130563621257 6.91459807306944 6.66490429585355 8.25043210301366 8.94226861536326 7.01269884586586 7.74658262632843 9.07040163099062 7.5775320168961 6.48947746408847 8.11947389202047 6.9579933476171 0.185913073343081 0.186517581155963 0.183083127254369 0.183313489656304 0.181601040217284 0.184133667731927 0.184943462014968 0.180242927063445 0.184851339345102 0.177519686167452 0.185975376360935 0.191444262722182 0.177519686167452 0.185159040758210 0.186464449599450 0.18306950512539 0.202646742233564 0.178934740423332 0.178676846738154 1 1 - 1356623 1356862 1356797.818 1356190 1358385 - gene protein_coding_gene FALSE TRUE AT1G04820.1 TUA4 (tubulin alpha-4 chain) Encodes an alpha tubulin isoform that is expressed in roots, leaves and flowers. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA6 (tubulin alpha-6 chiain) [Arabidopsis thaliana] (TAIR:AT4G14960.2); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to Tubulin alpha chain (GB:P33629); similar to alpha tubulin 1 [Pseudotsuga menziesii var. menziesii] (GB:AAV92352.1); similar to putative tubulin alpha-2/alpha-4 chain [Brassica napus] (GB:AAQ81585.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.113371945909469 1.33706040895696 0.216282342060908 1 1.61664515686430 14.0836202622064 0.113371945909469 0.0740503422392544
AT1G71697_at 7.58070150573559 7.950709470434 7.59760470432844 7.82539252272839 7.9748806410745 7.57212064060035 7.24253358415257 7.33041371647496 6.81428320371143 6.71667126175996 7.17629646001076 7.32948127465083 6.45963495278814 6.66041215853068 6.5542991859658 7.11252685459273 6.68853964568148 6.45504758173466 6.74202059368797 0.229510146004661 0.232677316146603 0.222866772398969 0.225935986933597 0.222409513448876 0.233443716706601 0.221256590102195 0.236834101591356 0.242057498747350 0.233502654796345 0.223821996459034 0.223722066456465 0.230045438899558 0.231014353355626 0.224664608755934 0.221746962573108 0.227556902461682 0.231357487488918 0.220901581520709 1 1|0 +|/ 26975803 26976601 26976170.5 26974885 26977126 + gene protein_coding_gene FALSE TRUE AT1G71697.1 ATCK1 (CHOLINE KINASE) Encodes choline kinase. mRNA levels are increased in response to wounding. similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to GmCK2p (GB:AAC49375.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575) 0.131640734587455 1.33698345381516 0.216306410606949 1 1.61655727272097 14.4153886568399 0.131640734587455 0.103649735407182
AT1G11680_at 9.18204550037593 9.29046010208924 9.09987649729252 9.21010279345217 9.43097012957177 9.20799013068625 9.49581744165155 9.6351741157198 9.48912960861742 9.46367239771147 9.54077515675434 9.45985533185473 9.44500388401438 9.47325880831063 9.50554183960326 9.42856427746354 9.01334510765768 9.50215728645837 9.4356669440839 0.0879821225149897 0.0863409332011374 0.0919368305817075 0.0831784996909854 0.0850827885256537 0.0916640785094597 0.084868773672646 0.085028689275429 0.0918982953283502 0.0835680688574997 0.0838069011449869 0.083047478559309 0.0881813877327382 0.0828884385971308 0.0868833617424378 0.0828884385971308 0.0937500497326157 0.0840614764117547 0.0871808164872396 1 1 + 3940015 3940560 3940304.545 3938501 3940754 + gene protein_coding_gene FALSE TRUE AT1G11680.1 CYP51G1 (CYTOCHROME P450 51); oxygen binding putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis. similar to CYP707A3 (cytochrome P450, family 707, subfamily A, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G45340.1); similar to obtusifoliol-14-demethylase [Petunia x hybrida] (GB:CAL69911.1); similar to cytochrome P450 monooxygenase CYP51G1 [Medicago truncatula] (GB:ABC59074.1); similar to obtusifoliol 14alpha-demethylase [Solanum chacoense] (GB:AAT12274.1); contains InterPro domain Cytochrome P450; (InterPro:IPR001128); contains InterPro domain E-class P450, group IV; (InterPro:IPR002403) -0.102699837082381 -1.33643991276218 0.216476473975444 1 1.61593662890067 18.7609974363477 -0.102699837082381 0.052787041065545
AT1G79660_at 7.36027402348671 7.70053759288876 6.67047099794479 7.25278723035239 8.11769545162586 7.84577084039785 7.26893103452518 7.563977224827 7.5253051437452 6.47838622899143 6.96387939561681 6.38561920121268 7.20812810141527 7.25334671658225 5.72229401397132 6.9890360704377 6.27970240206033 6.78542506843942 7.01308530430365 0.226330185340189 0.219875855023713 0.236750093181618 0.236471772251896 0.21986530227303 0.239575319445282 0.222795639266392 0.219207137857589 0.230601147923901 0.227951717306210 0.224647145860628 0.216467206341507 0.22564112090146 0.231553890428424 0.238807959278777 0.218561757049965 0.237007456557375 0.227379068127660 0.223247489663991 1 1 + 29981205 29981419 29981294.818 29980756 29981666 + gene protein_coding_gene FALSE TRUE AT1G79660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16170.1); similar to Os08g0266200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061402.1) -0.154456096657406 -1.33619960347855 0.216551698404284 1 1.61566228123624 14.3245660979546 -0.154456096657406 0.135808415796020
AT2G17870_at 8.15629497726934 8.28077631574038 8.36409413628414 8.01363587800113 8.4745438530692 7.95995158922605 7.988876748767 8.14556846300873 8.39710122752431 8.11369852122927 8.53937322009895 8.31091751426438 8.51797381810367 8.56105208923245 8.62104555973995 8.52479570437097 8.20312616411997 8.4553217059403 8.24155574708298 0.124011013366886 0.126800799265440 0.128747516491914 0.132651826227409 0.122763208800568 0.140627920562600 0.125862756778487 0.126210710532512 0.128555618325895 0.128543497098251 0.126462619398792 0.123407678021355 0.121793960579076 0.126874818280828 0.123261589287200 0.121793960579076 0.132856931446903 0.129867130345344 0.130300257146198 2 2 - 7771358 7771877 7771630.273 7771057 7772312 - gene protein_coding_gene FALSE TRUE AT2G17870.1 cold-shock DNA-binding family protein similar to CSDP1 (COLD SHOCK DOMAIN PROTEIN 1), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G36020.1); similar to cold shock domain protein 3 [Triticum aestivum] (GB:BAD08701.1); similar to Os02g0121100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045715.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Cold-shock protein, DNA-binding; (InterPro:IPR002059); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Cold shock protein; (InterPro:IPR011129); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.138046397326873 1.33592910603653 0.216636399356777 1 1.61535350623318 16.5317106888021 0.138046397326873 0.113172204539809
AT1G03400_at 10.0269827652067 10.0596428375210 10.3569898099286 10.2219274492209 10.2160299339185 9.7843006036919 10.0465941343837 9.5925891874263 10.4085876769764 9.49631022791464 10.0649531079258 9.78819452729715 9.71083565180543 10.0763600465834 9.58838424213191 9.84847118754687 9.89565403718322 10.2878553568159 9.63861511427555 0.100342821541914 0.0995396270181967 0.100137329255725 0.0979758200484713 0.0983366325759942 0.101097606542708 0.0997578672567189 0.0976083644612104 0.109058363784032 0.110616274176374 0.098391732800866 0.0983714540770836 0.101706661824638 0.101679429792974 0.104143687683723 0.096640258742268 0.106794135305430 0.0995306403609485 0.102726621370898 1 1 - 842911 843454 843124.909 842746 844189 - gene protein_coding_gene FALSE TRUE AT1G03400.1 2-oxoglutarate-dependent dioxygenase, putative A single copy gene that encodes a protein with sequence similarity to tomato E8 (ACC synthase, the last step in ethylene biosynthesis) involved in ethylene synthesis and fruit ripening in tomato. This gene is not induced by ethylene in siliques. The transcript is found in siliques, etiolated seedlings, leaves, stems and flowers. similar to 2A6 [Arabidopsis thaliana] (TAIR:AT1G03410.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.136555282330593 1.33571795056675 0.216702538174306 1 1.61511249765687 19.9158451865206 0.136555282330593 0.111054616847611
AT3G46740_at 7.65753131844641 7.78690931619078 7.3070603363239 7.27926091006698 6.57693946733986 7.28582719666403 7.26655839548776 7.76099334722792 5.96789939635609 7.2693855948509 7.35781389879796 8.21069121193527 7.28045747444222 7.454919926725 8.52848339384036 7.51230946646415 7.47118853123046 6.638850651242 6.91902245972996 0.164743162320599 0.165704253359278 0.167101440488126 0.163484651546199 0.161704876392714 0.167897404616147 0.167522107859462 0.161341267840934 0.202114778582823 0.165623651274634 0.164615153035578 0.166005242444683 0.160434667078470 0.169497948886017 0.165784089332492 0.161055189094599 0.180193243409648 0.175482739167068 0.175199733118465 3 3|0 -|/ 17227099 17227834 17227449 17226798 17230328 - gene protein_coding_gene FALSE TRUE AT3G46740.1 TOC75-III (translocon outer membrane complex 75-III); protein translocase Component of the translocon outer membrane (TOC) complex. Forms the outer envelope translocation channel (beta-barrel). Plays a role in preprotein conductance. Imported into chloroplast. Expressed in young dividing photosynthetic tissues. Knockout mutants are embryo lethal with arrested development at the two-cell stage. Knockout mutants have abnormal etioplasts. Identical to Protein TOC75-3, chloroplast precursor (75 kDa translocon at the outer-envelope-membrane of chloroplasts 3) (AtTOC75-III) (TOC75-3) [Arabidopsis Thaliana] (GB:Q9STE8); similar to ATTOC75-IV/TOC75-IV (TRANSLOCON OUTER MEMBRANE COMPLEX 75-IV) [Arabidopsis thaliana] (TAIR:AT4G09080.1); similar to Protein TOC75, chloroplast precursor (75 kDa translocon at the outer-envelope-membrane of chloroplasts) (Import intermediate associated protein of 75 kDa) (75 kDa chloroplast outer envelope protein) (GB:Q43715); similar to chloroplast import-associated channel protein homolog [Oryza sativa (japonica cultivar-group)] (GB:AAP06869.1); similar to Bacterial surface antigen (D15) [Medicago truncatula] (GB:ABD33137.1); contains InterPro domain Bacterial surface antigen (D15); (InterPro:IPR000184); contains InterPro domain Chloroplast envelope protein translocase, IAP75; (InterPro:IPR005689); contains InterPro domain Surface antigen variable number; (InterPro:IPR010827) 0.166172026141418 1.33551448611332 0.216766284276636 1 1.61488028992553 14.5029392707920 0.166172026141418 0.151311462201505
AT1G34190_at 9.06226787131816 9.27354578561465 9.38672590712067 9.19905750359854 9.43741127150829 9.08219213656913 8.87210800624536 8.85390346159683 8.75190758708707 8.26043414656423 8.36452294202513 8.33041591733372 8.56168168546918 8.49595245670274 7.969265671257 8.43199165136728 8.19562020144096 8.49208323451081 8.14151122088198 0.140079657455192 0.143910789347223 0.137087694939615 0.145236106443316 0.138592661520550 0.139779318218593 0.136826292232877 0.143474713755979 0.142705615603485 0.134552590070310 0.139996359210089 0.133778722237881 0.137133198098867 0.137983151434862 0.147029182321410 0.136849933700288 0.149387077179694 0.140627008895473 0.133818729821838 1 1|0 +|/ 12453065 12453843 12453508.3 12451429 12454120 + gene protein_coding_gene FALSE TRUE AT1G34190.1 ANAC017 (Arabidopsis NAC domain containing protein 17); transcription factor similar to ANAC016 (Arabidopsis NAC domain containing protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT1G34180.1); similar to nam-like protein 7 [Petunia x hybrida] (GB:AAM34770.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.115732246003835 1.33444451350023 0.217101773532048 1 1.61365952623134 17.5158061787087 0.115732246003835 0.0786151788921535
AT1G51680_at 9.09321805339196 9.30154390895076 9.67608438680159 9.63938690590155 9.47820923672102 9.06630817123881 10.4029945309025 10.3817688301745 9.56977021582305 10.1511493369061 10.1381127310193 10.2914029753396 10.1939221515791 9.8663726127768 10.1945915089291 10.2007453014288 9.74172894395663 9.8998551084944 10.1868328783172 0.118643346574770 0.119897286249214 0.123732533052498 0.118006963976734 0.121478492631732 0.131499554571309 0.120802758287289 0.127781605684533 0.130787661686950 0.119218192180009 0.117370565298768 0.117369993279588 0.119424626873087 0.126966322788520 0.11660387942822 0.120301129654435 0.133819430755493 0.126043417971715 0.114184264370575 1 1 - 19162737 19163633 19163352.727 19162420 19165220 - gene protein_coding_gene FALSE TRUE AT1G51680.1|AT1G51680.2|AT1G51680.3 4CL1 (4-COUMARATE:COA LIGASE 1); 4-coumarate-CoA ligase|4CL1 (4-COUMARATE:COA LIGASE 1) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. Identical to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1) (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL3 (4-coumarate:CoA ligase 3), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G65060.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); similar to 4-coumarate:coA ligase 2 [Rubus idaeus] (GB:AAF91309.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|Identical to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1) (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); similar to 4-coumarate:CoA ligase 3 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK58908.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873)|Identical to 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (At4CL1) (4-coumaroyl- CoA synthase 1) (4CL1) [Arabidopsis Thaliana] (GB:Q42524;GB:Q8RY63); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); similar to 4-coumarate:CoA ligase 3 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK58908.1); similar to 4-coumarate:coA ligase 2 [Rubus idaeus] (GB:AAF91309.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.116646774673747 -1.33429280191681 0.217149378422645 1 1.61348648338465 19.6474853665300 -0.116646774673747 0.0802159022044846
AT2G31150_at 4.15316670241598 4.4236590367436 5.10316672500648 4.06224944483572 6.19636797468889 4.75089329537038 5.51385653898733 4.50113745953762 3.57112632797841 4.43332938647001 4.74532828396565 4.67634308080615 5.06611090535719 4.03355364091924 4.4076304905302 4.90671935956554 5.19946050525944 4.45800268323123 5.14747311623709 0.243167423213901 0.238648449487512 0.231790915498209 0.238861896134857 0.251414110293396 0.233053970901845 0.251945127738768 0.240273810059437 0.259783732364765 0.235974073864262 0.271494366386314 0.23525597457029 0.240665439107841 0.261331377380559 0.249546388375861 0.231828179360610 0.249732943475671 0.240468405363331 0.243129801285626 2 2 + 13280245 13280416 13280326 13279452 13281655 + gene protein_coding_gene FALSE TRUE AT2G31150.1 ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism similar to ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G06190.1); similar to SAP-like protein BP-73, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94331.1); similar to Os03g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049178.1); similar to Putative plasma membrane proton ATPase [Oryza sativa] (GB:AAK92634.1); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) 0.341440883681697 1.33410329947554 0.217208854035165 1 1.61327035338462 9.373372094998 0.341440883681697 0.357669782307290
AT1G71950_at 9.10947833202676 9.12895552057777 8.86859111152038 9.0144570636791 9.35093518840628 8.98607353043274 8.76385266520305 8.91922069324896 8.76486734461329 8.55585000355305 8.79638680278903 8.78446766016107 8.89022529527785 8.97843775702277 8.5204350766433 8.88963953066133 8.5238021286096 8.65468599998793 8.49199593374416 0.0970213904823896 0.0978137150656983 0.0987859593519458 0.101342757181730 0.098490091000728 0.0957325313670785 0.0961590043866198 0.0976013659313634 0.0999707601068014 0.094547130445534 0.0978495485971226 0.0985346676383578 0.100013286326215 0.104863665180692 0.0969766110447561 0.095698493693188 0.103948890621486 0.0971790449338567 0.0989742882487883 1 1|0 -|/ 27084136 27085194 27084776 27083846 27085275 - gene protein_coding_gene FALSE TRUE AT1G71950.1 identical protein binding / subtilase similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT5G11940.1); similar to putative Pi starvation-induced protein [Cicer arietinum] (GB:CAA07232.1); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.112579845751383 1.33325805014049 0.217474305875258 1 1.61230656897446 17.6971944091523 0.112579845751383 0.0732001775316901
AT3G27570_at 8.1632018945774 8.19024290608943 8.37238048344764 8.49675148294022 8.10822065489881 7.9652144503459 8.79563470210437 8.63435133303938 7.5663963286878 8.10600817733002 7.73696726083601 7.7769821700302 7.72853015905962 7.75815639648986 7.36122496081554 8.00202643564955 7.94468593708407 7.80029565720131 7.5794526798622 0.176133535269893 0.164769018403243 0.164351798922388 0.168917712260179 0.168916628301577 0.168527001552946 0.171087621946187 0.163505090662065 0.167930584270971 0.157426744638704 0.168240204619230 0.168210479877054 0.161068286836914 0.169622465106492 0.161544319112347 0.168574260152086 0.169776819838713 0.161828693593315 0.157740044260376 3 3|0 -|/ 10215531 10216646 10216068.9 10215233 10217973 - gene protein_coding_gene FALSE TRUE AT3G27570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40510.1); similar to Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum] (GB:AAB33256.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Sucraseferredoxin-like; (InterPro:IPR009737); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.09861319042937 -1.33310058684346 0.217523788003671 1 1.61212706568759 16.0978635804833 -0.09861319042937 0.0433198588987685
AT3G29310_at 5.34158794774391 5.13679987587889 5.02588895390264 5.34816288888296 5.05808882048523 5.61231057893338 5.0657395095282 4.85388153650369 4.96027324644753 5.04861349749693 5.39436679616748 4.92360761009795 4.87396373373942 4.89840577284309 5.0289997902057 4.85941177494399 4.98118408018307 5.09461007251512 4.63228540964325 0.199376367559225 0.209290494099282 0.210321760303230 0.199421384292032 0.197371503600962 0.214048064901428 0.204655385366550 0.207194137802025 0.221815713917322 0.197371503600962 0.20094818542286 0.201037162712430 0.209919061543351 0.200399386678387 0.209292132654012 0.203307507262469 0.206092471669621 0.208673152595467 0.215934732250601 3 3 + 11252128 11252656 11252389.636 11250889 11253057 + gene protein_coding_gene FALSE TRUE AT3G29310.1 calmodulin-binding protein-related similar to Os05g0512400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056021.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.144019289555894 1.33267716423668 0.217656894233699 1 1.61164444272719 10.1239122248321 0.144019289555894 0.122104040346780
AT4G22260_at 8.3104080203291 8.53819278179487 8.6146462438962 8.57578358484882 8.83285075743012 7.8913687393285 8.87679098022279 8.5552361818433 7.72057884375721 7.9333594676941 7.46389711872706 7.26499059695511 7.62382869838128 7.73565662106342 6.98742318306266 8.07011236828959 7.75278777886504 7.11184745019191 7.69034164251749 0.173221880478312 0.174117526685277 0.175091665257958 0.168676360419714 0.168425478772972 0.193175041455973 0.171141770877466 0.173935563295894 0.182638097169269 0.173684548161917 0.183878871530441 0.172468946963365 0.184720358258045 0.18660054020609 0.175016104099188 0.170265643277565 0.180123678801075 0.174854796568424 0.179819780091647 4 4 - 11770011 11771198 11770640.909 11769768 11772526 - gene protein_coding_gene FALSE TRUE AT4G22260.1 IM (IMMUTANS) Similar to mitochondrial alternative oxidase. im mutants have a variegated phenotype and fail to differentiate chloroplasts in the majority of their cells under high light intensity continuous illumination. The white tissues of immutans accumulate phytoene, a non-colored C40 carotenoid intermediate. This suggests that immutans controls, either directly or indirectly, the activity of phytoene desaturase (PDS), the enzyme that converts phytoene to zeta-carotene in higher plants. However, im is not the structural gene for PDS. It is located in the lumenar face of the thylakoid membrane. IM is expressed ubiquitously in plant tissues. Identical to Alternative oxidase 4, chloroplast precursor (EC 1.-.-.-) (Protein IMMUTANS) (Plastid terminal oxidase) (AOX4) [Arabidopsis Thaliana] (GB:Q56X52;GB:O49631;GB:Q9SBA4;GB:Q9ZSQ3); similar to AOX2 (alternative oxidase 2), alternative oxidase [Arabidopsis thaliana] (TAIR:AT5G64210.1); similar to Alternative oxidase [Medicago truncatula] (GB:ABD32645.1); contains InterPro domain Alternative oxidase; (InterPro:IPR002680) -0.185801667026265 -1.33204593211275 0.217855455876474 1 1.61092513352904 16.1657819753442 -0.185801667026265 0.176751605587274
AT4G20400_at 6.23622015371047 6.70954327727235 6.00078529393603 6.16983441393112 6.96048188490808 6.11224828876993 5.61998469083308 5.4932650182337 5.82720023567493 5.45610211212423 5.49416569185665 5.92316000826572 5.67144610079752 5.92870372542509 5.35888446887153 5.69124988077855 5.42094581997629 5.78525921597142 5.49122023188034 0.198145578792645 0.196758723493127 0.199217558741127 0.193786324093668 0.199564213729173 0.209798715041365 0.195026979727643 0.194514583445618 0.200666639822008 0.197324335712197 0.196294535582983 0.195620038619329 0.193653838190468 0.201866056926764 0.194900299476660 0.192181379602970 0.203394256608656 0.207891637563911 0.197253529234339 4 4 + 11012726 11013530 11013163 11008677 11013871 + gene protein_coding_gene FALSE TRUE AT4G20400.1|AT4G20400.2 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G30810.1); similar to MEE27 (maternal effect embryo arrest 27), transcription factor [Arabidopsis thaliana] (TAIR:AT2G34880.1); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.181901761403449 1.33120368946929 0.218120633728958 1 1.60996570300304 11.7881625729757 0.181901761403449 0.172028043022428
AT2G18240_at 5.61702056084388 5.94399836557721 5.38390385955463 5.40329944377469 6.68231405307878 6.0276780428911 5.7147805143942 5.97423899610992 4.07083239507517 4.77931719898634 4.67985748409598 4.51204504081846 4.81470830302706 5.55330795131232 3.94815477054354 4.85815960523557 4.70264343120426 4.22208691224137 4.40291318812579 0.243254602496828 0.250088409308634 0.257411818849990 0.24799032607221 0.248785602556879 0.253117521186401 0.252373133809928 0.255674142745055 0.248238191986222 0.244384581235701 0.245677911787423 0.243444573248804 0.244937309754522 0.257399625374919 0.255438904919682 0.243254602496828 0.253790716474247 0.262896884631343 0.250251012053725 2 2 + 7942652 7943497 7943009.636 7942367 7943803 + gene protein_coding_gene FALSE TRUE AT2G18240.1|AT2G18240.2 RER1 protein, putative similar to ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) [Arabidopsis thaliana] (TAIR:AT2G21600.1); similar to putative endoplasmatic reticulum retrieval protein Rer1B [Oryza sativa (japonica cultivar-group)] (GB:BAD53619.1); similar to Os06g0708300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058533.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.152736041920444 1.33037373235818 0.218382212417826 1 1.60902063886637 10.3829332452142 0.152736041920444 0.134399836416069
AT1G78300_at 8.67716941431015 8.85498855555365 8.38285930601887 8.53550884422831 8.26406516408069 8.43368254030438 8.86065869098458 9.20080064226411 9.08457862095918 8.68624703487987 9.57819737119626 9.27852307410724 9.2099179853948 8.91847890996087 9.45445359816721 8.80303286711818 8.5982436168477 9.10898923091501 8.78973992973482 0.112916457832687 0.110859672511695 0.110706340474478 0.113124760581711 0.117658712723677 0.113902818280546 0.115568197658224 0.115058174689385 0.119199423432528 0.118613332000424 0.109930424766953 0.113404158633065 0.116424673535071 0.122412378096091 0.115117345180470 0.109590413270475 0.122795477682968 0.115676732849330 0.117909010666163 1 1 + 29466956 29467916 29467255.636 29466564 29468278 + gene protein_coding_gene FALSE TRUE AT1G78300.1 GRF2 (GENERAL REGULATORY FACTOR 2); protein phosphorylated amino acid binding G-box binding factor GF14 omega encoding a 14-3-3 protein Identical to 14-3-3-like protein GF14 omega (General regulatory factor 2) (GRF2) [Arabidopsis Thaliana] (GB:Q01525); similar to GRF4 (GENERAL REGULATORY FACTOR 4), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G35160.1); similar to GF14omega isoform (GB:AAA96253.1); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.114583821132304 -1.33003584151450 0.218488782419973 1 1.60863599152343 17.6373423665038 -0.114583821132304 0.0772739224896229
AT3G57560_at 6.52432113876384 7.09745728331319 5.90424771573765 6.04540587799919 6.02061442517346 5.86255058789701 6.51481879299097 7.04820105011259 7.19312288705503 6.03950790876086 7.07181821873821 7.51067598215425 6.80693776442342 6.70931766281751 7.86634329774469 6.64714336875778 5.58640139515729 6.7820497504028 5.81339431489347 0.184646475095603 0.183773328029438 0.186581180160641 0.186782108257940 0.19383124180537 0.193854832427971 0.190499588755606 0.183721756899357 0.186573758518091 0.182239722485706 0.180626302174895 0.180017924987502 0.182486628939421 0.188577062951832 0.180017924987502 0.180322322683579 0.201827896158674 0.185537393270327 0.185131776190096 3 3 - 21322183 21322716 21322536.182 21321802 21323289 - gene protein_coding_gene FALSE TRUE AT3G57560.1 aspartate/glutamate/uridylate kinase family protein encodes a N-acetylglutamate kinase, involved in arginine biosynthesis similar to GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein [Arabidopsis thaliana] (TAIR:AT4G37670.1); similar to Acetylglutamate kinase [Medicago truncatula] (GB:ABE83616.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Glutamate 5-kinase; (InterPro:IPR001057); contains InterPro domain Acetylglutamate kinase; (InterPro:IPR004662); contains InterPro domain N-acetylglutamate kinase; (InterPro:IPR011148) -0.157042010735971 -1.32908833371431 0.218787860440252 1 1.60755769639097 12.9878325924623 -0.157042010735971 0.140365519604450
AT3G11250_at 5.62410700055915 5.78381768338415 5.35057045030114 5.55136634015296 5.59776015868282 5.33899908231535 5.94321608598398 6.23657470303313 4.58644828929954 4.86868267131683 4.79048550458762 5.44038191313675 4.62195833519029 4.71541452216119 5.59453726680371 4.70918114167908 4.63239036443526 4.18414097564210 4.44077106091681 0.247392236429405 0.246425991262981 0.241894144945375 0.247474120125933 0.246316771001481 0.253417798000998 0.244387938038625 0.243330088339696 0.253797723564863 0.241275309881495 0.240344453613868 0.240044506112527 0.241059523362395 0.251901598736204 0.243066529786385 0.249659874762406 0.251404292514545 0.244141995949441 0.243113911766746 3 3 + 3522051 3522724 3522338.909 3521363 3523007 + gene protein_coding_gene FALSE TRUE AT3G11250.1 60S acidic ribosomal protein P0 (RPP0C) Identical to 60S acidic ribosomal protein P0-3 (RPP0C) [Arabidopsis Thaliana] (GB:P57691;GB:Q8LAM3); similar to 60S acidic ribosomal protein P0 (RPP0B) [Arabidopsis thaliana] (TAIR:AT3G09200.1); similar to 60S acidic ribosomal protein PO [Euphorbia esula] (GB:AAF34767.1); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.116580473966796 -1.32860507222081 0.218940534657800 1 1.60700791431561 10.4123157347844 -0.116580473966796 0.080956123033512
AT2G44740_at 5.65851500438146 6.30499846821945 3.0837984405325 3.05709945605836 4.87711653698734 4.57351463943230 5.12138792534799 3.98814890233893 5.18868025241193 4.48484014979658 7.48019140424527 7.19730825194383 6.47405071469676 6.19482208229412 6.4718168117893 5.17623318839804 4.07464455345436 6.3061390114541 6.11578983945508 0.279337539474574 0.270162331968708 0.273236545457702 0.289920010600728 0.276707589628525 0.279131536405879 0.277491492174424 0.291056740250291 0.306346318979042 0.273688558858026 0.27871142876665 0.28066290619103 0.279779384632343 0.289372348170911 0.272690169145606 0.273190787068171 0.269126091605667 0.285898248237956 0.279215012057076 2 2 - 18449407 18450277 18449882.545 18449064 18450474 - gene protein_coding_gene FALSE TRUE AT2G44740.1 CYCP4;1 (cyclin p4;1); cyclin-dependent protein kinase similar to CYCP4,2 (CYCLIN P4,2), cyclin-dependent protein kinase [Arabidopsis thaliana] (TAIR:AT5G61650.1); similar to PREG-like protein [Picea mariana] (GB:AAC32127.1); similar to Os10g0563900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065406.1); similar to Os04g0544200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053459.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Negative regulatory factor PREG; (InterPro:IPR012389) -0.230791484211361 -1.32850182417910 0.218973165013608 1 1.60689047050838 10.3005745047485 -0.230791484211361 0.231858280804249
AT3G56940_at 12.6869737951036 12.8285264183707 12.6401534728752 12.5451080357270 12.8108557084329 12.5113522075006 13.2141429739323 13.3696269500073 13.1971514779237 13.4311020681153 13.6776282000779 13.7481684241273 13.4401004743696 13.4554311420587 13.4121685119234 13.5552435878978 13.2505506530243 13.4186551490811 13.3102935647658 0.0909832032964216 0.0857143573204615 0.0898451226453505 0.0867808801355104 0.0857143573204615 0.0962451336265483 0.0899205105126094 0.0872892199044191 0.094621458334238 0.0883125267678417 0.088769029183629 0.0857143573204615 0.0875661760454183 0.0936262199837034 0.0923507080937108 0.0857143573204615 0.0914963390368098 0.0901735353301254 0.0883054565704718 3 3|0 +|/ 21088498 21089219 21088843.1 21087523 21089422 + gene protein_coding_gene FALSE TRUE AT3G56940.1 AT103 (DICARBOXYLATE DIIRON 1) Encodes a putative ZIP protein with varying mRNA accumulation in leaves, stems and roots. Has a consensus carboxylate-bridged di-iron binding site. Identical to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor (EC 1.14.13.81) (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (Copper response defect 1 protein) (Dicarboxylate diiron protein) (AtZIP) (CRD1) [Arabidopsis Thaliana] (GB:Q9M591;GB:O04051;GB:Q38892;GB:Q8GUS3;GB:Q9M1K4); similar to Ferritin-related [Medicago truncatula] (GB:ABE79845.1); similar to putative desaturase-like protein [Trifolium repens] (GB:CAK54360.1); similar to Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase, chloroplast precursor (Mg-protoporphyrin IX monomethyl ester oxidative cyclase) (GB:Q945B7); contains InterPro domain Ferritin-related; (InterPro:IPR012347); contains InterPro domain Ferritin/ribonucleotide reductase-like; (InterPro:IPR009078); contains InterPro domain Rubrerythrin; (InterPro:IPR003251); contains InterPro domain Magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase; (InterPro:IPR008434) -0.108027973667232 -1.32802034023785 0.219125387138050 1 1.60634286202083 26.2296385976212 -0.108027973667232 0.0654294016175862
AT2G24240_at 7.7673610399196 8.53877520397207 7.77387372025366 8.18860232896999 8.82786777584898 8.16276926968196 7.00006940171292 7.10455862535351 5.04261331363164 5.21486547378159 4.64147066847962 5.02998232322236 4.9127345762472 5.60104612100309 3.95117334222183 5.52734976567777 5.27596927250754 4.39571699402923 5.21880675720053 0.253829310691306 0.258929337578857 0.259316127125108 0.254479213543211 0.25732868615379 0.261382211783686 0.264697702482397 0.253829310691306 0.277783056282398 0.258123418496732 0.259548855275036 0.255673885941438 0.254592529055104 0.257660932760168 0.267567810719119 0.256452575168601 0.260718428529667 0.269771551937196 0.260506989136284 2 2 + 10318658 10319169 10318926.727 10317728 10319408 + gene protein_coding_gene FALSE TRUE AT2G24240.1 potassium channel tetramerisation domain-containing protein similar to potassium channel tetramerisation domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G30940.1); similar to BTB/POZ [Medicago truncatula] (GB:ABE85429.1); contains InterPro domain K+ channel tetramerisation; (InterPro:IPR003131); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain BTB; (InterPro:IPR000210) 0.196877870334057 1.32785809009421 0.219176703133020 1 1.60615835731590 12.9583307862782 0.196877870334057 0.191172826203111
AT3G25220_at 8.23210048386869 8.69606883233035 8.42049828176594 8.66917980640496 8.64313217234726 7.82481842069973 8.3673659662335 8.52596776550406 7.38873019440017 7.93041715497876 8.30883864209672 8.39218135237637 7.86871424380397 8.5235761177359 8.32304478442525 7.9874371768588 7.53690606192343 7.7615413234868 7.66454432133024 0.168393627326710 0.169137809830763 0.167732093417599 0.171127349306069 0.171677663612228 0.172007402819282 0.174851948471688 0.165638203233382 0.198744790593003 0.176597168227564 0.172170015363217 0.164907029275892 0.169853863804751 0.179188313154394 0.174109022010312 0.171017470654332 0.174776461654213 0.185657687373331 0.166822899472281 3 3|0 +|/ 9183954 9185660 9185028.9 9183853 9185916 + gene protein_coding_gene FALSE TRUE AT3G25220.1 FKBP15-1 (FK506-binding protein 15 kD-1); FK506 binding / peptidyl-prolyl cis-trans isomerase immunophilin (FKBP15-1) Identical to FK506-binding protein 2-1 precursor (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (15 kDa FKBP) (FKBP-15-1) (FKBP15-1) [Arabidopsis Thaliana] (GB:Q38935;GB:Q9LSF4); similar to FKBP15-2 (FK506-binding protein 15 kD-2), FK506 binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT5G48580.1); similar to putative immunophilin [Hordeum vulgare subsp. vulgare] (GB:CAD42633.1); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) 0.180290407127837 1.32768690031229 0.219230857617551 1 1.60596370212504 16.2968967260150 0.180290407127837 0.170606013468127
AT3G50780_at 4.91346511419643 5.22638616364838 4.30739477397474 4.33708814390962 5.85549370729029 5.53777993654552 5.6352934952023 5.56039401401291 4.40584847232106 4.41864330530648 4.90745207039879 5.58091547085837 4.91539222519791 5.04349015126768 5.45913933065955 5.20893375011678 5.36562537165016 4.27776013246373 4.7971389918323 0.208988665207069 0.210395137200048 0.219939998900043 0.207296767282819 0.205555536267113 0.221481551691456 0.210606902260982 0.207579240999874 0.217872736328446 0.213756258569615 0.205902012541273 0.206809575306425 0.214800791386050 0.206861948600321 0.214190125388375 0.205555536267113 0.220725400314505 0.229316933836174 0.210257268947231 3 3 - 18886672 18887131 18886894.2 18886380 18888505 - gene protein_coding_gene FALSE TRUE AT3G50780.1 similar to PRLI-interacting factor-related [Arabidopsis thaliana] (TAIR:AT1G63850.1); similar to PRLI-interacting factor G-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83795.1); similar to Os03g0769400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051395.1); similar to Os07g0123500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058798.1); contains domain POZ domain (SSF54695) 0.114924708335855 1.32641225733154 0.219634438579606 1 1.60451483592222 9.9893529949208 0.114924708335855 0.0784213113412406
AT2G27580_at 7.38514491985774 7.68591434527305 7.85513242656811 7.54609828193195 7.80754988214279 7.52969646109056 7.36251461894808 7.42375366835603 7.59174181484252 7.36200964571675 7.64752610142804 7.33275380111558 7.54534313269652 7.45817317821247 7.79611980519538 7.89014759494727 7.67103803639986 7.57489671553452 7.8219658134719 0.197286071727731 0.198102470116419 0.186541593943786 0.188395073970954 0.191379417985816 0.189109312551362 0.193226715125957 0.196436334010352 0.195711702058038 0.18688341070511 0.186169691115336 0.184282648279919 0.184099538045602 0.186207077834519 0.187081383321683 0.181688267355568 0.190487985229856 0.188877898603453 0.185947270163284 2 2 - 11783811 11784147 11783975.273 11783488 11784605 - gene protein_coding_gene FALSE TRUE AT2G27580.1 zinc finger (AN1-like) family protein Identical to Zinc finger A20 and AN1 domain-containing stress-associated protein 3 (AtSAP3) (SAP3) [Arabidopsis Thaliana] (GB:Q9ZNU9); similar to zinc finger (AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT3G52800.1); similar to Zinc finger, AN1-type; Zinc finger, A20-type; Antihaemostatic protein [Medicago truncatula] (GB:ABE93196.1); contains InterPro domain Antihaemostatic protein; (InterPro:IPR011061); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, A20-type; (InterPro:IPR002653) 0.121440706252719 1.32620405517451 0.219700420133040 1 1.60427825888897 15.1776783523718 0.121440706252719 0.0894069958411807
AT1G51430_at 4.71656348943514 4.16783071311377 4.47956816552549 3.98862123518621 4.75422578275991 4.80549175907861 4.50855769540124 4.15384190700779 5.17811897294393 4.75355743421877 5.2102809338249 5.57310010260183 4.96875241849644 4.85068504416993 5.30359817259412 5.28942888058532 4.70312966779004 4.82323639379071 4.7540365322978 0.206653785987457 0.204401882625209 0.208427047169761 0.219570860126536 0.206900672093801 0.204381038314718 0.203817161937480 0.210382137883479 0.203817161937480 0.213085364601552 0.206387531118787 0.207594289956141 0.215060919074126 0.214623737546099 0.204860766746925 0.203817161937480 0.208598031237043 0.218987871497381 0.211205187092344 1 1|0 +|/ 19071909 19073186 19072529.75 19071909 19073444 + gene protein_coding_gene FALSE TRUE AT1G51430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28370.1) 0.157658544821450 1.32573636255685 0.219848698545787 1 1.60374691173691 9.43959464254777 0.157658544821450 0.141713495165787
AT3G51120_at 6.91592292707204 7.18065508616194 6.79203922317424 6.832307176188 7.03191483934754 6.85354233974197 6.39557528912799 6.67728092945678 6.35354028791716 6.54999101320036 6.40891319870543 6.38569946103186 6.87170034882442 7.05278421078215 6.6337706226495 7.06119498050454 6.52900539564437 6.00626322435906 6.53355790739658 0.168709551796105 0.171910858053542 0.167831091010260 0.172298073670583 0.173120157123231 0.17838040553569 0.175727800479412 0.176517318688878 0.176057409399007 0.169453152990294 0.186708434853318 0.170851210178117 0.174328424992633 0.175246021807429 0.173494059821240 0.171709305360459 0.177871286626834 0.173987436899784 0.170792471108941 3 3 - 18997009 18997555 18997333.091 18996880 19002989 - gene protein_coding_gene FALSE TRUE AT3G51120.1 zinc finger (CCCH-type) family protein similar to PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G18090.1); similar to Plus-3 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54582.2); similar to Os10g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065041.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Plus-3; (InterPro:IPR004343); contains InterPro domain GYF; (InterPro:IPR003169); contains InterPro domain SWIB/MDM2; (InterPro:IPR003121); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.112364515399777 1.32546874258539 0.219933583717011 1 1.60344292075512 13.3837528095258 0.112364515399777 0.074005798720693
AT4G03260_at 10.0010540213556 9.866642851403 10.1193996782988 9.96220531233431 10.1546594592900 9.66196357475074 10.315226898133 9.89106544507035 10.0277022713974 10.1917619158161 9.946431556393 9.8884113366771 9.90824216758305 10.0072704320374 9.46109038923942 10.1532543807927 10.0507354438276 9.94926155074076 10.2515188163168 0.0823305445530157 0.0803791199628933 0.0854768855829792 0.0803791199628933 0.0814564503372487 0.0871877683584319 0.083160680107126 0.0809677713249987 0.0847099518284145 0.0827235468776369 0.0830854908899996 0.081863271051673 0.0856990078244265 0.0803791199628933 0.0866618295159126 0.0830735818064028 0.0827150789638126 0.0822148326177768 0.0870272394033522 4 4 + 1430846 1431406 1431128.727 1428171 1431663 + gene protein_coding_gene FALSE TRUE AT4G03260.1 leucine-rich repeat family protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G78230.1); similar to Os07g0106100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058703.1); similar to Os05g0501600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055971.1); similar to leucine-rich protein [Porphyromonas (GB:NP_905954.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, SDS22; (InterPro:IPR007092) -0.140173737585362 -1.32354614232989 0.220544224292565 1 1.60126016308971 20.0353179009152 -0.140173737585362 0.118063188726141
AT1G58200_at 10.0261428254643 9.94453098980482 9.62357949055879 9.48506944660872 9.90481390729655 9.68205907328082 9.75430559783758 9.53153478339883 9.58515549917653 9.84318700137376 9.72573926517727 9.64858975643456 9.60592160190308 9.5924731311042 9.53590961914366 9.66460381543565 9.58887025264185 9.61806336382031 9.65188389810343 0.0837356267401184 0.0823310789720083 0.0815062976835904 0.0817748118092082 0.0827325686726079 0.0839846326392726 0.0817401322484297 0.0837465455675206 0.089194160976201 0.0804931867979338 0.0826747720842246 0.0804154602790742 0.0804154602790742 0.0836437740726816 0.0849865733687283 0.0810261724250396 0.0869587223831942 0.0843103981015266 0.0821654098678327 1 1 - 21552104 21552602 21552344.091 21551852 21556792 - gene protein_coding_gene FALSE TRUE AT1G58200.1|AT1G58200.2 MSL3 (MSCS-LIKE 3) A member of MscS-like gene family, structurally very similar to MSL2, comprising of an N-terminal chloroplast transit peptide, five trans-membrane helices and a C-terminal cytoplasmic domain. Mutant plants showed abnormalities in the size and shape of plastids. MSL3-GFP was localized to discrete foci on the plastid envelope and co-localize with the plastid division protein AtMinE. MSL3 was capable of increasing the osmotic-shock survival of a mutant bacterial strain lacking MS-ion-channel activity. similar to MSL2 (MSCS-LIKE 2) [Arabidopsis thaliana] (TAIR:AT5G10490.1); similar to 117M18_28 [Brassica rapa] (GB:AAZ66947.1); contains InterPro domain MscS mechanosensitive ion channel, C-terminal; (InterPro:IPR011066); contains InterPro domain MscS Mechanosensitive ion channel, transmembrane; (InterPro:IPR011014); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain MscS Mechanosensitive ion channel; (InterPro:IPR006685) -0.105567759266919 -1.32349479182719 0.220560553561096 1 1.60120189140191 19.4019695894107 -0.105567759266919 0.0612065932955909
AT1G50140_at 7.0075292937065 6.4844882000294 6.2868736625906 5.91994670973965 6.60166658704733 6.50267032464554 6.33734211935498 5.97872619302799 5.85744795970237 6.38212222426108 6.41121940310375 6.3622368964759 5.84890119873635 6.33686497817744 5.82477840706528 5.83293114675642 6.08654129816226 5.4973936282658 6.34637270211531 0.212494638732295 0.205079259277332 0.21141493621303 0.213007376458823 0.207944669990089 0.209451147751594 0.209218699752168 0.216194008016163 0.228264396970331 0.215631880810124 0.203800173410222 0.208794850236410 0.210156117397432 0.209105156327503 0.212464853755722 0.206961214974598 0.220932867020391 0.211287999906282 0.211010575136082 1 1|0 -|/ 18573591 18574532 18574097.75 18573449 18579492 - gene protein_coding_gene FALSE TRUE AT1G50140.1 AAA-type ATPase family protein similar to ATPase [Arabidopsis thaliana] (TAIR:AT3G19740.1); similar to transitional endoplasmic reticulum ATPase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16461.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.147219028145311 -1.32344520570389 0.220576322738822 1 1.60114562325256 12.5001167187440 -0.147219028145311 0.127944992405646
AT4G33200_at 6.59282468571504 6.50710859620372 6.9803550491349 6.62954712591052 7.25322290168669 7.02471711856955 6.85370765065293 6.46313916190053 6.15858269667442 6.41797722868054 6.29811374623107 6.32102716097377 6.55600636287657 6.11329809800832 6.41321698978226 6.62731889383923 5.95507809665237 6.34380184043532 6.7446617429586 0.229218086959972 0.229253101156908 0.221235226453857 0.216535483248923 0.222634413118573 0.226013428656171 0.220928853171909 0.236685661336513 0.228827291364175 0.230728995137665 0.221319564422750 0.220501905410597 0.218562772680793 0.229444388886560 0.227290178356606 0.219714577790324 0.24845417925838 0.226222518320678 0.222018586397809 4 4|0 -|/ 16002782 16004633 16003583.111 16002535 16014971 - gene protein_coding_gene FALSE TRUE AT4G33200.1 XI-I (Myosin-like protein XI-I); motor/ protein binding member of Myosin-like proteins similar to XIC (Myosin-like protein XIC), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G08730.1); similar to XIK (Myosin-like protein XIK), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT5G20490.1); similar to XIE (Myosin-like protein XIE), motor/ protein binding [Arabidopsis thaliana] (TAIR:AT1G54560.1); similar to myosin class 11-1 [Adiantum capillus-veneris] (GB:BAD80748.1); similar to putative myosin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:AAM22736.1); similar to putative myosin heavy chain [Oryza sativa (japonica cultivar-group)] (GB:BAD16972.1); contains InterPro domain Dilute; (InterPro:IPR002710); contains InterPro domain Myosin, N-terminal, SH3-like; (InterPro:IPR004009); contains InterPro domain Myosin head, motor region; (InterPro:IPR001609); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.127920475518019 1.32231706802763 0.220935347476761 1 1.59986582090094 13.1725227219073 0.127920475518019 0.100188350871152
AT1G01490_at 10.9481272801693 11.0072309628154 11.4155303097555 11.4159200414458 11.5835968439947 11.4450501735672 11.3926646798832 11.4984269208364 11.5700878490917 11.8268966801851 11.8562428428995 11.4569471054943 11.8428228747630 11.7982887390750 11.0423526442205 12.0022068319370 11.6990008638596 11.3839017588679 11.7046827517960 0.0688657059186823 0.0671054729135893 0.0686178860439097 0.0682980321777578 0.0679365137536568 0.070360736820063 0.0682377554090539 0.0701117568420249 0.071403553272024 0.0664324383856233 0.0697387634979234 0.0676325050217417 0.066439132379474 0.0706175843545822 0.0688735523822223 0.0663366187156697 0.0728258007419293 0.069250076240959 0.0677845238839475 1 1|0 -|/ 180404 181386 180624.7 180059 182357 - gene protein_coding_gene FALSE TRUE AT1G01490.1|AT1G01490.2 heavy-metal-associated domain-containing protein|metal ion binding similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G23760.1); similar to Unknown (protein for MGC:78286) [Mus musculus] (GB:AAH71252.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.0940382892733633 1.32181200568496 0.221096242139652 1 1.59929308170798 23.0062065105571 0.0940382892733633 0.0318506291615821
AT3G03330_at 8.35766726019183 8.31492933710084 8.03767445847827 8.07451329123411 8.618105321972 8.2505408014715 8.09002994409192 8.09648062667832 7.77077802276385 8.09054167974693 8.00629083338696 8.17508589526208 8.00516205335148 7.86713767556457 6.91078056653456 7.7840732387745 7.76119934231603 7.44077186815766 8.10323156515338 0.236659542976203 0.242165729600888 0.249539484251034 0.247637321912307 0.234000170676985 0.246894439626141 0.240651431926592 0.246076832508525 0.288132766843045 0.234000170676985 0.234000170676985 0.234000170676985 0.234000170676985 0.249531862712111 0.261408665133770 0.234000170676985 0.268224433468726 0.277317139839879 0.243141038720579 3 3|0 -|/ 783599 784587 784061 783339 786216 - gene protein_coding_gene FALSE TRUE AT3G03330.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G03350.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE78015.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.106969697723164 -1.32160651975595 0.221161731035696 1 1.59906010073237 16.0959908501806 -0.106969697723164 0.0643635215012005
AT1G14410_at 5.88821442673096 5.88198015875147 5.55186701783651 5.35865579634613 5.29157039750849 5.14932258305328 5.32353788339669 5.43087606876002 3.4181129652931 4.21365607096287 4.38970974202492 4.72647583099508 3.96331876573549 4.07070509128857 5.06523426908085 4.29092999281887 4.17649860911751 4.14493498945003 3.95726821350631 0.266548558766091 0.268402341262535 0.266548558766091 0.268815703871455 0.267742721200882 0.266548558766091 0.269653500114737 0.266548558766091 0.268730520172569 0.267624347082071 0.268076100804612 0.266548558766091 0.266548558766091 0.268018004904065 0.266548558766091 0.266548558766091 0.275608122734071 0.270485483879231 0.266548558766091 1 0|1 /|- 4929370 4930145 4929852.714 4929118 4930899 - gene protein_coding_gene FALSE TRUE AT1G14410.1 ATWHY1/PTAC1 (A. THALIANA WHIRLY 1, PLASTID TRANSCRIPTIONALLY ACTIVE1); DNA binding Encodes a homolog of the potato p24 protein. Binds single strand telomeric repeats. Negatively regulates telomerase activity and telomere length. similar to ATWHY3/PTAC11 (A. THALIANA WHIRLY 3) [Arabidopsis thaliana] (TAIR:AT2G02740.2); similar to DNA-binding protein p24 [Solanum tuberosum] (GB:AAF91282.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Plant transcription factor; (InterPro:IPR013742) 0.0985826545013995 1.32160310374579 0.221162819866190 1 1.59905622783582 9.59274720549861 0.0985826545013995 0.0454990196510779
AT1G27510_at 6.63134299629231 6.85642398869966 6.7030508310394 6.44526948954261 7.10821467081673 6.59289093252387 6.96398409189594 6.80186561752161 6.37167426367169 6.06355014534796 5.87970863303431 6.04804570801863 6.22920089953675 5.63279413281339 6.48806253353999 6.34924357854117 6.27623584730706 6.08259687602614 6.44019011025616 0.189009286440945 0.188601417005948 0.184909708341835 0.187333235785817 0.189326371636633 0.193177070096997 0.189160350773673 0.19606396185129 0.197308557524621 0.186323724969251 0.187352666104312 0.180502118539511 0.185298907947872 0.193663335836633 0.195730167016555 0.18312627703585 0.186748577313034 0.199025963330251 0.192846563888044 1 1 - 9555614 9556378 9556067.455 9554732 9558354 - gene protein_coding_gene FALSE TRUE AT1G27510.1 similar to EX1 (EXECUTER1) [Arabidopsis thaliana] (TAIR:AT4G33630.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44852.1) -0.134808253139073 -1.32121508053825 0.221286529320085 1 1.59861634815306 12.9704007602219 -0.134808253139073 0.110667561535997
AT3G59400_at 10.4258233907559 10.5831886966813 10.2247733435677 10.302654788242 10.0644939691911 10.5815384063626 11.1163330479796 11.7182867921518 11.5526230973179 11.5527279944532 12.1443526728956 12.1138917605706 11.9233213316434 12.0790345081097 11.8060505524730 12.1226830054367 11.4404085848304 11.4545494446223 11.4865149601266 0.0785573446749814 0.0773052769772862 0.0808446882214592 0.0757213912758125 0.0784517754889339 0.080982956308467 0.0772879553650604 0.079946937938475 0.0797515274196025 0.0788172566982419 0.0760143969183319 0.0757213912758125 0.0773151469294059 0.0785497966515918 0.0759892724664351 0.076017570182524 0.0817377120107073 0.0826759596354239 0.0785975030810199 3 3 - 21959967 21960406 21960150 21959694 21960687 - gene protein_coding_gene FALSE TRUE AT3G59400.1 GUN4 (Genomes uncoupled 4) GUN, genomes uncoupled, is necessary for coupling the expression of some nuclear genes to the functional state of the chloroplast. Binds to the magnesium chelatase complex and promotes formation of the substrate,a tetrapyrrole signaling molecule. Porphyrin-binding protein that enhances the activity of Mg-chelatase. Although required for chlorophyll accumulation under normal growth conditions, GUN4 is not essential for chlorophyll synthesis. Identical to Tetrapyrrole-binding protein, chloroplast precursor (Genomes uncoupled 4) (GUN4) [Arabidopsis Thaliana] (GB:Q9LX31;GB:Q8VZR4); similar to Os11g0267000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067668.1); similar to GUN4-like [Crocosphaera watsonii WH 8501] (GB:ZP_00516280.1); contains InterPro domain GUN4-like; (InterPro:IPR008629) -0.156314194888916 -1.32116101800964 0.221303770185325 1 1.59855506702383 22.3352158043025 -0.156314194888916 0.140644860812921
AT2G25080_at 12.6841987052206 12.7285838233492 13.052986971687 13.0410837263712 13.2724460307830 12.9595092534862 13.2645677058144 13.1730293845792 13.6243220065952 13.5510189763640 13.7903938360308 13.4793113960821 13.7194006254831 13.7957891377411 13.2742247886768 13.6885364270818 13.5131500140519 13.6540437705842 13.4042288165449 0.0752549306091718 0.0712066037875702 0.0768169641487161 0.0702857265123057 0.0716578519256752 0.0769038310063573 0.0787683191784477 0.0766876278098714 0.0717314149853164 0.0702857265123057 0.0720592532637084 0.0734600943338722 0.074468600090494 0.071608696400229 0.0721211159002441 0.0714880953206459 0.0749211435462702 0.070684945162918 0.0702857265123057 2 2|0 +|/ 10675355 10676880 10676173.556 10675137 10677098 + gene protein_coding_gene FALSE TRUE AT2G25080.1 ATGPX1 (GLUTATHIONE PEROXIDASE 1); glutathione peroxidase Encodes glutathione peroxidase. Identical to Phospholipid hydroperoxide glutathione peroxidase 1, chloroplast precursor (EC 1.11.1.12) (PHGPx) (GPX1) [Arabidopsis Thaliana] (GB:P52032;GB:O19985;GB:O81717); similar to ATGPX7 (GLUTATHIONE PEROXIDASE 7), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G31870.1); similar to glutathione peroxidase [Brassica napus] (GB:AAM12502.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.103372286903046 1.32088746395900 0.221391025709852 1 1.59824501140606 26.5924904581453 0.103372286903046 0.056982151655455
AT3G12300_at 5.57998899196524 5.86081013857452 5.57284187757362 6.01862553640837 6.39690091613395 6.29580164565125 5.80882631690461 5.73271777037499 5.19806014247627 5.3445207910272 5.06548602221798 4.70970205317243 4.89194847389405 4.56072633392688 4.31076972889546 5.19522393891434 5.24553958101769 4.52455951426917 5.61453553450038 0.241548221408197 0.237446377168415 0.239493570276974 0.238428601886732 0.243105321668302 0.235018497985077 0.241683826038232 0.239169390596054 0.242439835086357 0.246372799555911 0.237012526161772 0.240581733356392 0.23809339914264 0.232707843479759 0.253346385191741 0.235312816856638 0.241528180565836 0.247977975134131 0.24702704723844 3 3|0 -|/ 3921905 3923064 3922348 3921535 3923162 - gene protein_coding_gene FALSE TRUE AT3G12300.1 similar to Protein of unknown function DUF667 [Medicago truncatula] (GB:ABE88669.1); contains InterPro domain Protein of unknown function DUF667; (InterPro:IPR007714) -0.123627172029582 -1.32045284844712 0.221529715092161 1 1.59775248642495 11.0076641217599 -0.123627172029582 0.0937689889444266
AT2G22370_at 5.34967081068862 5.66818911917257 5.9028985593506 5.50208533917468 5.91033621244792 5.34443575658131 6.17856005935226 5.58171259552536 5.31940103070611 5.23396594764213 5.02497856159672 5.02502863954229 5.28783715597076 4.97185397156337 5.10876581091224 4.89990548712991 4.83457842288179 4.772648130914 5.39108578153797 0.223340585144178 0.227529486060551 0.221959243843300 0.223989669710995 0.225688849016877 0.225166495847523 0.2283223860584 0.23979749179901 0.242166312434802 0.222239952418956 0.227240530305838 0.222921757291711 0.225986047878959 0.244142821989624 0.227440235800211 0.225415710765838 0.23743490580616 0.227287109286634 0.223585747176056 2 2|0 -|/ 9508118 9508915 9508422.375 9507895 9509269 - gene protein_coding_gene FALSE TRUE AT2G22370.1 similar to Os02g0193900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046173.1); similar to mediator of RNA polymerase II transcription, subunit 18 homolog [Xenopus tropicalis] (GB:NP_001017086.1); contains domain Thiamin pyrophosphokinase, catalytic domain (SSF63999) -0.176856121680462 -1.31951301393407 0.221829876308230 1 1.59668777521132 10.8324946111330 -0.176856121680462 0.167655530794822
AT4G34110_at 10.9315322587287 10.9494752438784 10.5983003104083 10.6048595602633 10.7549203714354 10.7536133424333 10.6451243923398 10.6577483166444 10.8808309826150 10.9861806728453 10.9228493356885 10.9736782996615 10.9425667813523 10.9683279084921 10.9491670302845 10.8985351954734 10.8569451859489 10.8681653717385 11.0822781379538 0.0911862296301453 0.0902140446966268 0.0887239755642879 0.0896036353007355 0.0896697419066895 0.094567338436589 0.092141372606219 0.0936025180837682 0.0935893831884078 0.0916742180726315 0.0878536656558788 0.0878536656558788 0.088384211229334 0.0916698552471556 0.0907107602635147 0.0895504727180745 0.0979987338643016 0.0884972924028695 0.0878536656558788 4 4|0 +|/ 16338891 16339857 16339432.333 16336392 16340102 + gene protein_coding_gene FALSE TRUE AT4G34110.1 PAB2 (POLY(A)-BINDING PROTEIN 2); RNA binding Putative poly-A binding protein. Member of a gene family .Expressed in stele and root meristem and post-fertilization ovules.Member of the class II family of PABP proteins. Identical to Polyadenylate-binding protein 2 (Poly(A)-binding protein 2) (PABP 2) (PAB2) [Arabidopsis Thaliana] (GB:P42731); similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to RNA-binding re (GB:ABE82276.1); similar to poly(A)-binding protein [Cucumis sativus] (GB:AAF63202.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66825.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0893069329937317 -1.31879957518814 0.222057962489188 1 1.59587986068636 21.6897597177088 -0.0893069329937317 0.00396912958835752
AT1G79850_at 10.4530755295063 10.6438897202461 9.76350993623981 9.89921031192469 10.3407425526781 10.2010433756696 10.270331539949 10.8880854531515 11.2166331438073 11.2209434983644 11.49578771446 11.7679842658220 11.1721089274153 11.4058012399246 12.0161550979717 11.5116204369520 10.8531106295186 11.1588812309299 11.1249965435309 0.0806707775683638 0.0747990154009115 0.0856424170120557 0.0808213950898054 0.0779964171764183 0.0836063268545569 0.0759155617707713 0.0786014680305005 0.0800802149073086 0.0757211306093907 0.0750199205221392 0.07512164426099 0.0761715535101504 0.0773881652874191 0.0782197946938597 0.0757514116012453 0.07975317312656 0.0764853450308578 0.0767912116417098 1 1 - 30046391 30046764 30046569.091 30046136 30046845 - gene protein_coding_gene FALSE TRUE AT1G79850.1 RPS17 (ribosomal protein S17); structural constituent of ribosome nuclear-encoded 30S chloroplast ribosomal protein S17 Identical to 30S ribosomal protein S17, chloroplast precursor (CS17) (RPS17) [Arabidopsis Thaliana] (GB:P16180); similar to EMB1129 (EMBRYO DEFECTIVE 1129), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G49400.1); similar to ribosomal protein S17 (GB:AAA84030.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Ribosomal protein S17; (InterPro:IPR000266) -0.138781109472544 -1.31836519794709 0.222196930258781 1 1.59538809701056 21.6125888464749 -0.138781109472544 0.116854885232633
AT3G14100_at 9.92745944123763 9.99071231338498 9.76997878992918 9.84465253071999 10.1323589697798 10.0432458838607 9.7051069159234 9.95706477598145 9.77559828525823 9.82574592581845 10.0553666020442 9.86051528649482 10.0389132005413 10.0547345565313 9.91406175196206 10.0891178224945 10.0611538623170 9.8624386140825 9.93354620893338 0.0829350224236455 0.0849358980556277 0.0895856917994156 0.0889925038009424 0.0829031278994894 0.0846795145889537 0.090292963647627 0.0845672566645474 0.0884944973813736 0.083256020303761 0.080884560302022 0.0858781859713815 0.0822584183654292 0.082931381439004 0.0856008763820556 0.080884560302022 0.0824994674964108 0.0819792639672826 0.0859488437164758 3 3 + 4675003 4675929 4675621.636 4672926 4676169 + gene protein_coding_gene FALSE TRUE AT3G14100.1 oligouridylate-binding protein, putative similar to UBP1B (OLIGOURIDYLATE BINDING PROTEIN 1B), mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G17370.1); similar to UBP1A, mRNA 3'-UTR binding [Arabidopsis thaliana] (TAIR:AT1G54080.1); similar to oligouridylate binding protein-like protein [Solanum tuberosum] (GB:ABB72820.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0997737103311647 1.31766595242052 0.222420790836473 1 1.59459668778420 19.8398230452997 0.0997737103311647 0.049252524399795
AT2G21160_at 10.0325063249435 10.173242243049 9.84076092745298 9.8822506105516 9.841607609835 9.53549344185368 10.1615365968458 10.1724867885904 9.65508935979002 9.72522989598358 10.0109575328663 10.1803481566541 9.787226755865 9.73251353298199 10.0619748472182 9.51922815808248 9.32719338361015 9.62609895207631 9.5056742706819 0.0770308498809126 0.0765103312745461 0.0789788156261335 0.0775967149650222 0.079934150583569 0.0791088310108497 0.076822762499062 0.0758044618297542 0.0885996065198429 0.0778185159404077 0.0780561389077708 0.07570992837556 0.0772623602199136 0.0799677595093007 0.0838396359060866 0.07570992837556 0.0930482300477848 0.0804461321943786 0.0791515898457751 2 2|0 +|/ 9076154 9077103 9076752 9075399 9077512 + gene protein_coding_gene FALSE TRUE AT2G21160.1|AT2G21160.2 translocon-associated protein alpha (TRAP alpha) family protein Identical to Translocon-associated protein subunit alpha precursor (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha) [Arabidopsis Thaliana] (GB:P45434;GB:Q94A59;GB:Q9SKP7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16595.1); similar to alpha-subunit; putative (GB:AAA21820.1); contains InterPro domain Translocon-associated protein (TRAP), alpha subunit; (InterPro:IPR005595)|Identical to Translocon-associated protein subunit alpha precursor (TRAP-alpha) (Signal sequence receptor subunit alpha) (SSR-alpha) [Arabidopsis Thaliana] (GB:P45434;GB:Q94A59;GB:Q9SKP7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16595.1); similar to alpha-subunit; putative (GB:AAA21820.1); contains domain TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT (PTHR12924); contains domain Ribosomal protein L30p/L7e (SSF55129) -0.103943342416510 -1.31759035544650 0.222445004357258 1 1.59451114268425 19.6596641547591 -0.103943342416510 0.0587758919972532
AT4G35890_at 7.53968928608934 8.08462725212362 8.04174844455123 7.8122054755994 7.57181942273105 7.45034486541517 7.31105567829147 7.50297222610337 7.51940510374028 7.72801875025683 7.92125843748648 8.3874449941927 7.7125881130222 7.94605875791796 7.46645741247914 8.12688722835347 7.58301143428716 7.00497283101557 7.58486812703566 0.186023996113838 0.180248144533952 0.194182702396778 0.185505551803202 0.185037821655127 0.197194355291376 0.189409987204738 0.195555817570503 0.187523704341245 0.191536595635921 0.183023981970923 0.189350997640626 0.182068838269298 0.191804540857364 0.189675642914421 0.185113588028931 0.199536510660869 0.181731562557839 0.192433456855270 4 0|4 /|+ 16998992 17000387 16999776.7 16997142 17000836 + gene protein_coding_gene FALSE TRUE AT4G35890.1 La domain-containing protein similar to La domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G66100.1); similar to RNA-binding protein Lupus La [Medicago truncatula] (GB:ABE93453.1); contains InterPro domain RNA-binding protein Lupus La; (InterPro:IPR006630) 0.133632174419505 1.31666807081784 0.222740589947243 1 1.5934677405938 15.3539822787490 0.133632174419505 0.109618265120338
AT3G52905_at 5.39226043195007 5.6133208352024 5.33277873679578 5.56928350320176 5.70869085077031 5.84502039233198 6.39353267103057 5.77060459904639 3.74590494626686 4.96885053556734 4.11057411899436 4.25568488991210 4.48819505399073 4.72049300930195 4.24062305033634 5.02807609065711 5.08589205057627 4.5724604178844 5.29839929546718 0.259415675004015 0.262185306376758 0.259415675004015 0.263747714074769 0.259415675004015 0.269181979269177 0.259415675004015 0.276593075395110 0.267349615544363 0.263642375791546 0.259415675004015 0.259415675004015 0.275215407908401 0.268046718674829 0.259415675004015 0.261936722086725 0.259780493172602 0.270658040119349 0.262483473621866 3 3|0 -|/ 19625275 19626381 19625949.143 19624986 19626723 - gene protein_coding_gene FALSE TRUE AT3G52905.1 DNA binding / hydrolase, acting on ester bonds / nuclease/ recombinase similar to hypothetical 19.6 kDa protein [Cicer arietinum] (GB:CAB88667.1); contains InterPro domain Resolvase, RNase H-like fold; (InterPro:IPR006641); contains InterPro domain Holliday junction resolvase YqgF; (InterPro:IPR005227); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.143394010379768 -1.31602097129270 0.222948179548206 1 1.59273593770752 10.3200872163614 -0.143394010379768 0.123758568007815
AT2G22640_at 6.50683369545991 6.53069052219245 6.78631231230794 6.91874380362942 7.36922221691842 6.87108659055988 7.39000799226324 7.00733591323029 7.15278238927222 6.43047358685768 7.2102136864908 7.16466297780119 6.76425244678561 7.0848465974856 6.99204574299817 7.23201721882414 6.94301384708959 6.95016617494025 7.12009020203156 0.173270860459070 0.171217534030189 0.173030429446722 0.175134057064812 0.170788898908143 0.182776950077506 0.166760386365992 0.174015818083012 0.173500571331172 0.178874942836738 0.173453976024522 0.171974786033646 0.169632589640764 0.175667592689337 0.171433199177482 0.167611571997998 0.166760386365992 0.167893238636245 0.171432145019075 2 2 + 9630363 9630459 9630415.75 9630148 9631298 + gene protein_coding_gene FALSE TRUE AT2G22640.1 BRK1/HSPC300 (BRICK1) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2. Identical to Protein BRICK1 (AtBRK1) (BRK1) [Arabidopsis Thaliana] (GB:Q94JY4;GB:Q9ZQ49); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84182.1); contains domain no description (G3D.1.20.5.30) 0.134580571949438 1.31562602009481 0.223074960563919 1 1.59228940047739 13.8944129954564 0.134580571949438 0.111171192938708
AT1G01830_at 6.04853167621185 6.48377779318897 6.34675826325943 6.62883865443258 7.05414341805782 6.2802742310912 5.65020203001732 5.6142342114025 5.00777981602311 5.15149182181886 4.22806828844799 4.76163809699322 4.906846265361 4.54099748328297 4.15178315326107 4.74675465597414 5.60897205347165 5.47077234515138 5.10323845897063 0.235056875581451 0.229483470641994 0.238287701595073 0.233384279739150 0.233106379353729 0.231154340349499 0.230954083871548 0.232189990875632 0.251288129901675 0.228790816562036 0.247685303005702 0.235114197701086 0.229833459768137 0.243777803510763 0.251432158665621 0.231171580148800 0.248775950959203 0.237612696531454 0.232912846118297 1 1 - 298760 299286 299088.909 298535 302315 - gene protein_coding_gene FALSE TRUE AT1G01830.1|AT1G01830.2|AT1G01830.3 armadillo/beta-catenin repeat family protein|binding similar to binding [Arabidopsis thaliana] (TAIR:AT2G45720.2); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88271.1); similar to putative arm repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAM92297.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47908.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.171396445571913 1.31553330603051 0.223104731033188 1 1.59218458898295 11.2080862388813 0.171396445571913 0.161338161601151
AT4G35040_at 7.27680894592775 7.66901749176643 7.45799283889448 7.49762618058448 7.14664093348347 7.59356184271492 7.31497336569283 8.01815131928375 7.59725090685605 7.29216435371913 8.06264263806469 7.84987702781779 7.84465446846833 8.15248557320847 7.73082481295864 7.69372891171937 7.89962121408451 7.79277575358176 7.28857113167478 0.158259874015539 0.145945224827358 0.157696069787383 0.158911091648867 0.147009087142508 0.154102590581315 0.145924783320132 0.148950468164099 0.166531957290995 0.146850633171922 0.147441451428663 0.149681850752722 0.149699138997577 0.147162227129567 0.160872121560416 0.146555789365339 0.151085784254409 0.155808750243658 0.148362562340054 4 4 + 16681024 16681781 16681379.909 16680390 16682098 + gene protein_coding_gene FALSE TRUE AT4G35040.1 bZIP transcription factor family protein similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G16770.1); similar to bZIP transcription factor bZIP122 [Glycine max] (GB:ABI34664.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.169940918744804 1.3152249057793 0.223203782543529 1 1.59183598198754 15.1323408301625 0.169940918744804 0.159510584527984
AT2G29360_at 8.33451817671345 8.54563851611057 8.32725995529964 8.0868740417279 9.21352806810074 8.09074690503785 9.41561295419868 9.22619126178244 9.42681162983565 9.37366659526318 9.79313812187981 9.74079073641967 9.39309468057487 9.72932830434356 9.2019611312549 9.64127984438836 9.17769865615781 9.48994506495954 9.64535098427143 0.213043985826043 0.194005436597423 0.209155129967340 0.201740980327021 0.187103033437703 0.201929409925563 0.206743463351379 0.193164023388577 0.198884286701792 0.196573055864028 0.198607163689628 0.189618098737708 0.194106225856941 0.198535211604181 0.191506180514487 0.190482755959622 0.198891964857267 0.187103033437703 0.190336699248811 2 2|0 +|/ 12611384 12612160 12611696 12610880 12612348 + gene protein_coding_gene FALSE TRUE AT2G29360.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29150.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.205963243476261 -1.31506514232165 0.223255109782595 1 1.59165541020510 18.1564700535151 -0.205963243476261 0.204678775148861
AT2G21195_at 4.97082300927993 5.63099552533637 4.93638181327017 4.93156453703963 4.80134768730096 5.41618013534451 6.1468139593838 6.59060951492484 6.28503252529519 5.72038977427226 6.78948188980655 6.4487094270141 6.24706268001228 6.85509970677334 6.70664058617933 6.74194906606128 6.06450560394002 6.00510431527293 6.08800470570414 0.224052683340842 0.212241898950164 0.214190227316422 0.218486297150559 0.213270557045345 0.216979492328365 0.211289278010527 0.214093068947488 0.218419807418123 0.217176487191647 0.213049545583413 0.208405351952345 0.209859966412784 0.212837442272546 0.212591676175342 0.208405351952345 0.233017974727734 0.216360256540702 0.226861189708674 2 2|0 +|/ 9090303 9090708 9090498.75 9090246 9090990 + gene protein_coding_gene FALSE TRUE AT2G21195.1|AT2G21195.2|AT2G21195.3 |unknown protein similar to Os07g0265100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059333.1)| -0.181132567350232 -1.31425244950925 0.223516358736406 1 1.59073708367159 11.6848202699715 -0.181132567350232 0.173988748596095
AT2G41350_at 5.07677913580307 5.92477300770589 4.46370162091263 4.87570382235326 5.14883780391995 5.30569716483749 5.95417551784208 5.9536699747428 4.76030895552774 5.31339703332877 5.75785110405513 6.0451280956815 5.33955274006836 5.62449051751263 5.78958043624065 5.42145838622882 4.82236984456432 4.98189972798879 5.05396616747655 0.211384082164085 0.209501491835140 0.212704813460655 0.206534579776794 0.207823298010543 0.225336481020267 0.20988555475996 0.214392285064474 0.224929890862774 0.205920661733841 0.212418033132716 0.207952060481361 0.208121991595612 0.211393398939913 0.209768413872256 0.214342177856951 0.225703340465323 0.213765812420805 0.21291985385806 2 2|0 +|/ 17239128 17240461 17239846.111 17238419 17240635 + gene protein_coding_gene FALSE TRUE AT2G41350.1|AT2G41350.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G21980.1); similar to Helix-turn-helix, AraC type [Medicago truncatula] (GB:ABE89508.1) -0.174315167459729 -1.31372668033211 0.223685511000865 1 1.59014316671963 10.5955916270081 -0.174315167459729 0.165395770283029
AT1G56720_at 4.66830306761729 4.5663402567693 3.75418762049122 3.90063170338147 4.34641248517678 4.43926780881726 5.76832942420734 5.52406820528127 5.93268051226865 6.46913313513647 7.98808303377659 7.79956855818367 6.88543246163251 7.43324488232135 7.37949362825494 6.48758909778933 6.06219584021361 6.88156409927399 6.48766251472567 0.220677274819015 0.224910756741169 0.236514175012369 0.228652728923141 0.231321095615235 0.226523035944718 0.220053499043095 0.22508507389021 0.223827094364813 0.221667547390681 0.224223739226005 0.222530948399224 0.226097719184067 0.231530509148959 0.224598129908151 0.222880053447221 0.224368256745197 0.224363500217111 0.222889266439909 1 1|0 -|/ 21267317 21268005 21267648.5 21267085 21270033 - gene protein_coding_gene FALSE TRUE AT1G56720.1|AT1G56720.2|AT1G56720.3 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G09440.1); similar to Os01g0323000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042894.1); similar to putative receptor-like protein kinase 3 [Glycine max] (GB:AAU10525.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.101740468932483 -1.31277309782148 0.223992577701802 1 1.58906636971331 11.3265118235799 -0.101740468932483 0.0547596854947551
AT1G06230_at 7.75507640466534 7.97518637821535 7.72080663144998 7.81401184588753 8.13084098539754 7.923951178754 7.32510945336447 7.46452524256536 7.66946552282689 7.53120841325006 6.83319885470317 7.41622056666965 7.4791120676903 7.16826425198021 6.65869352449038 7.42560519631439 7.28978222191494 7.04051499221237 7.71754439308482 0.182682042886763 0.184192567907949 0.187490311735787 0.182381664605975 0.184732332633393 0.186682070258743 0.178206905128199 0.181267137367648 0.190158416064371 0.188874639388824 0.18486483661609 0.180801677751151 0.187083859109169 0.191016596842392 0.181100767068158 0.182458193930793 0.190250081579252 0.181363253390876 0.181499325031478 1 1|0 +|/ 1909330 1910138 1909697.3 1907088 1910847 + gene protein_coding_gene FALSE TRUE AT1G06230.1|AT1G06230.2 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G17790.1); similar to Bromodomain [Medicago truncatula] (GB:ABE82885.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) -0.104026929777017 -1.31261454566982 0.224043668298710 1 1.5888873787733 15.1653535496462 -0.104026929777017 0.0597917679695621
AT3G06200_at 5.60302040981985 5.57164908878385 5.38162866890504 5.68290804084211 6.13291406429432 5.61968450629574 5.83572370332596 6.32315565919756 5.12495375236514 4.79682074088451 5.2059592655196 5.20241296798657 5.42322674158656 5.93225050777783 5.36053307242857 5.90590877695484 5.25703750391735 5.26126133194345 5.12283788852431 0.196065334255336 0.194286246026449 0.208346602920126 0.192270766775656 0.197361622922511 0.193412889888585 0.20421632682717 0.195986698082419 0.211369110826989 0.198212421905287 0.198768458728272 0.195236884675285 0.192270766775656 0.192270766775656 0.192270766775656 0.192270766775656 0.201793008749408 0.200632022132138 0.192270766775656 3 3 + 1877947 1878463 1878203.545 1877600 1879354 + gene protein_coding_gene FALSE TRUE AT3G06200.1 guanylate kinase, putative similar to GK-1 (GUANYLATE KINASE 1), guanylate kinase [Arabidopsis thaliana] (TAIR:AT2G41880.1); similar to Guanylate kinase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95663.1); similar to Os03g0320900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049956.1); contains InterPro domain Guanylate kinase/L-type calcium channel region; (InterPro:IPR008145); contains InterPro domain Guanylate kinase; (InterPro:IPR008144) 0.149799790946098 1.31220943609571 0.224174252467009 1 1.58843010925709 10.9980578001525 0.149799790946098 0.133234999265919
AT2G40935_at 6.59360364315502 6.59321726146892 6.58263256412604 6.67914311884715 7.67841337030132 6.82215265402578 6.66066405537686 6.02660979510896 6.1506472530867 6.01301313529303 5.88122989342352 5.70258418044261 6.0235166121374 6.02457647005591 5.4404942087713 5.64800791794669 5.93463148972975 5.77908904616586 5.52739314525571 0.241339147334944 0.232781238727215 0.232893104155641 0.234011513091031 0.233118754484889 0.240339790242285 0.229087024199353 0.229880994208470 0.237529186968815 0.229331545470138 0.230522886644649 0.230729028061812 0.240911321163607 0.236286413620452 0.235088770584945 0.229087024199353 0.240458450499178 0.252777836869892 0.235977630363644 2 2 + 17090287 17091240 17090829.9 17089926 17091425 + gene protein_coding_gene FALSE TRUE AT2G40935.1|AT2G40935.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18470.1); similar to Os01g0267400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042685.1); similar to putative ORFX [Cryptomeria japonica] (GB:BAE92288.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) 0.189655060418309 1.31181975440954 0.224299924410986 1 1.58799033857666 12.5551965937409 0.189655060418309 0.185137892304681
AT3G48680_at 9.19624868891879 9.58061044077243 9.24987825446172 9.23810760686313 9.3119355652426 9.2386633635636 8.88071701617113 9.22828705867298 9.31332534271552 9.1208601135177 9.13008242277476 8.9226210705548 9.24720544200103 8.86555656088507 8.51377439833087 8.9053303177014 8.4590442735304 9.03884650705591 9.06121678583268 0.155523000125737 0.1608419341345 0.163471622993101 0.167010900211341 0.161753545313725 0.170475981105815 0.163766005067130 0.168881738154975 0.178533849431424 0.157479469374517 0.162727539178054 0.156147009759188 0.158226059811832 0.161061054860926 0.165300581516654 0.156762228571206 0.185620719245109 0.171512398389302 0.160102593039512 3 3|0 +|/ 18046279 18047690 18047324.6 18045996 18048021 + gene protein_coding_gene FALSE TRUE AT3G48680.1 GAMMA CAL2 (GAMMA CARBONIC ANHYDRASE-LIKE 2); acyltransferase Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex. Identical to Unknown mitochondrial protein At3g48680 [Arabidopsis Thaliana] (GB:Q9SMN1); similar to GAMMA CAL1 (GAMMA CARBONIC ANHYDRASE LIKE 1), carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT5G63510.1); similar to mitochondrial NADH:ubiquinone oxidoreductase 29 kDa subunit [Chlamydomonas reinhardtii] (GB:AAS48196.1); similar to Os02g0508000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046924.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.120823030092714 -1.31153083725965 0.224393138421859 1 1.58766433805586 18.2657768517298 -0.120823030092714 0.0905931255122484
AT1G71220_at 8.51239917650181 8.55788813646355 8.32713279703517 8.35438625481474 8.36004502406417 6.83061431565231 7.90374180923656 7.65256541082137 7.0588794364606 7.4878583215945 6.4614030831084 7.43743292363465 7.03448345074417 6.98069192906111 6.54031955120135 6.90534361495122 6.94098379965822 6.94129412752199 7.15431257709681 0.275057700425705 0.286785789866137 0.283985231385615 0.283133609339703 0.28799238185949 0.280555438206898 0.262860017479002 0.262860017479002 0.279290402992024 0.262860017479002 0.262860017479002 0.267382654409860 0.262860017479002 0.273500519771769 0.271695728126805 0.269629122721114 0.288517088677164 0.27086722612692 0.262860017479002 1 0|1 /|+ 26854679 26855311 26855075.5 26845292 26855581 + gene protein_coding_gene FALSE TRUE AT1G71220.1 UDP-glucose:glycoprotein glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to hypothetical protein LOC553288 [Danio rerio] (GB:NP_001071002.1); similar to PREDICTED: similar to UDP-glucose:glycoprotein glucosyltransferase 1 precursor (UDP-glucose ceramide glucosyltransferase-like 1) (UDP--Glc:glycoprotein glucosyltransferase) (HUGT1) isoform 1 [Bos taurus] (GB:XP_594485.2); similar to putative UDP-glucose:glycoprotein glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD28382.1); contains InterPro domain UDP-glucose:Glycoprotein Glucosyltransferase; (InterPro:IPR009448) -0.258521710214862 -1.31109969388902 0.224532300229399 1 1.58717794094924 15.1318103680916 -0.258521710214862 0.268377593339744
AT2G05830_at 8.32916850058313 8.33501206218735 8.45256043915843 8.348889846249 8.99244138069096 8.56439312570996 8.58329040286366 8.4137344583617 8.05999532722209 8.44081068357893 8.05780254866458 8.20326342876785 8.50966114520728 8.24482491323017 8.20804876872584 8.48641128981194 8.4153375968295 8.44400984921474 8.29278443549339 0.142056508176119 0.141546481124719 0.145353180034528 0.144743939966340 0.136658915600716 0.158759264667461 0.139049203006085 0.140464836260128 0.144363159632906 0.144043969937502 0.140249803795931 0.135434034032636 0.141090612186522 0.139731400020232 0.144572380171565 0.141460776158174 0.152780615620622 0.140642677904848 0.137921733113335 2 2 + 2230801 2231618 2231323.182 2229599 2232103 + gene protein_coding_gene FALSE TRUE AT2G05830.1|AT2G05830.2|AT2G05830.3|AT2G05830.4 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein|GTP binding / translation initiation factor similar to GTP binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT3G07300.2); similar to CIG2 [Nicotiana tabacum] (GB:BAB63262.1); contains InterPro domain Initiation factor 2B alpha/beta/delta; (InterPro:IPR011559); contains InterPro domain Initiation factor 2B related; (InterPro:IPR000649) 0.115454817872408 1.31103352869911 0.224553663091583 1 1.58710330526328 16.7952863226362 0.115454817872408 0.0816767169381063
AT2G16940_at 8.02043658058824 7.98867546867742 7.72860563280059 8.05653106473621 8.21512073087282 8.14045279251082 7.99119557568118 8.16597166833516 6.94624294605613 7.62031255739158 7.84799897511586 7.8589825211551 7.62124720519035 7.80828975893954 7.56240717008579 8.22984967302661 7.79069274515257 6.60619837716403 7.77042892638505 0.214830758137005 0.204923318905718 0.207028634502151 0.204037503606213 0.214091509577534 0.220370175534033 0.203724368188588 0.216312833402237 0.225123693697948 0.230009439773159 0.206398437542888 0.206188041978199 0.216105689282352 0.239578239595496 0.212477458556416 0.203724368188588 0.232478860831226 0.230844665665772 0.212991665800225 2 0|2 /|- 7349964 7350814 7350458.111 7349689 7354490 - gene protein_coding_gene FALSE TRUE AT2G16940.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G09880.1); similar to RNA-binding re (GB:ABE81620.1); contains InterPro domain Splicing factor, CC1-like; (InterPro:IPR006509); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.106827279263711 1.31083589589258 0.224617483367503 1 1.58688038566641 15.5940585791951 0.106827279263711 0.0658212772777442
AT1G48900_at 9.50085346050393 9.60693578499386 9.725976936856 9.68178459354872 9.72848146827294 9.70799034514997 9.63190933186081 9.45526662890593 9.30416295235299 9.16511741813125 9.30652465698405 9.33623801089358 9.26028864236351 9.16155068872636 9.38078137870306 9.24721904906367 9.28878365362152 9.0975198345397 9.22917189162009 0.0901595582585652 0.0900867075315581 0.0900709488264062 0.0895115384397211 0.0911783209995252 0.0925411904028058 0.0954105682419306 0.0896313211300203 0.0881984568970373 0.0905324591981737 0.0919322701144485 0.0896466976330609 0.0898306436679107 0.090082766044121 0.0874928597038582 0.0881911999238437 0.0897418129463548 0.0954090758639225 0.0931477106752508 1 1|0 -|/ 18088642 18089386 18088926.889 18088450 18091547 - gene protein_coding_gene FALSE TRUE AT1G48900.1|AT1G48900.2 signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C) Identical to Signal recognition particle 54 kDa protein 3 (SRP54) (SRP-54C) [Arabidopsis Thaliana] (GB:P49967;GB:Q93W49;GB:Q9FVP9); similar to ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT1G15310.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to GTP-binding signal recognition particle SRP54, G-domain [Medicago truncatula] (GB:ABE77897.1); similar to signal recognition particle 54 kDa subunit (GB:AAA66200.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain Signal peptide binding (SRP54) M-domain; (InterPro:IPR004125); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle protein SRP54; (InterPro:IPR006325)|Identical to Signal recognition particle 54 kDa protein 3 (SRP54) (SRP-54C) [Arabidopsis Thaliana] (GB:P49967;GB:Q93W49;GB:Q9FVP9); similar to ATHSRP54A (Arabidopsis thaliana signal recognition particle 54kDa A), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT1G15310.1); similar to signal recognition particle 54 kDa protein 2 / SRP54 (SRP-54B) [Arabidopsis thaliana] (TAIR:AT5G49500.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49966); similar to signal recognition particle 54 kDa subunit (GB:AAA66200.1); similar to Signal recognition particle 54 kDa protein 2 (SRP54) (GB:P49972); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain Signal peptide binding (SRP54) M-domain; (InterPro:IPR004125); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Signal recognition particle protein SRP54; (InterPro:IPR006325) 0.0946814265256304 1.31077485785171 0.224637197089496 1 1.58681154222420 18.8762401487932 0.0946814265256304 0.0366406026285489
AT1G09770_at 8.06689025463182 8.29677893193927 8.02127243300437 8.17117656780676 8.47101163343392 8.46053275540436 7.5766182903584 7.76414238650704 7.71813602647403 8.0189387293145 7.91370137997825 8.40433758461739 7.96545218301504 7.72506581640723 7.68482446077912 8.13662849613063 7.67567743991892 7.43061564683446 8.31177030577805 0.185563952721639 0.187774909337867 0.191488062584576 0.187596811599923 0.188436933587071 0.189569616692779 0.188704517794894 0.188984055623798 0.190983279318264 0.185726515873966 0.191229083558053 0.187669366616937 0.195733787098045 0.189989241894693 0.188233080357163 0.184070345363387 0.201138972885500 0.196016956034612 0.195800316590645 1 1 + 3164498 3165086 3164753 3161843 3165362 + gene protein_coding_gene FALSE TRUE AT1G09770.1 ATCDC5 (Arabidopsis thaliana homolog of cdc5); DNA binding / transcription factor member of MYB3R- and R2R3- type MYB- encoding genes similar to MYB3R-5 (myb domain protein 3R-5), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G02320.1); similar to Unknown (protein for MGC:154633) [Xenopus laevis] (GB:AAI28683.1); similar to CDC5 protein [Zea mays] (GB:AAL59389.1); similar to Unknown (protein for MGC:114655) [Xenopus laevis] (GB:AAH97531.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.102823535162244 1.31056122228497 0.224706207439466 1 1.58657060348214 16.0452126882102 0.102823535162244 0.0575507971210874
AT2G11000_at 6.03855611889261 6.43177864022538 6.40270522102584 5.46810515822295 6.68750317552463 5.92770677432593 6.85707651676125 6.53549628099566 5.51104942353731 6.11530014182446 5.92073846149828 6.10660541977601 5.83197461732262 5.91361259533126 5.22303109015857 5.74617917341312 5.90940943654418 5.52516403501817 5.99445796604261 0.266942198862870 0.265512580457683 0.264952807962334 0.278738430257898 0.276980610800679 0.278061262759929 0.263246332505515 0.281510271838078 0.293841204016232 0.26449702699772 0.265023532517545 0.263246332505515 0.263246332505515 0.271711053247004 0.281209968329923 0.269037123935682 0.287197652093685 0.277986552955275 0.269333589880952 2 2|0 -|/ 4348423 4349658 4348897 4348205 4354938 - gene protein_coding_gene FALSE TRUE AT2G11000.1 ATMAK10 (Arabidopsis thaliana MAK10 homologue); acetyltransferase Encodes a non-functional Arabidopsis homolog of the yeast protein MAK10, a component of the N-terminal acetyltransferase complex C. Mutant plants have normal photosynthesis as well as growth rates and pigmentation comparable to wild type. similar to natC N(alpha)-terminal acetyltransferase, Mak10 subunit-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36037.1); contains InterPro domain Mak10 subunit, NatC N(alpha)-terminal acetyltransferase; (InterPro:IPR007244) -0.222867481889618 -1.30986233283625 0.224932094014246 1 1.58578256854047 12.1164619177972 -0.222867481889618 0.226219294370207
AT4G11560_at 8.15359397831295 8.00852792492252 8.3473018845888 8.21138412376414 8.48354865813493 7.80327708296468 7.90485154102107 7.75052716248874 7.28841641941873 7.78437990991877 7.22276879869491 7.45770871192733 7.3376293896438 6.69608733989492 6.85975482589086 7.45820476926929 7.16612052461526 6.58104270845009 7.8542806118202 0.244998874797506 0.241679342103169 0.243935838426328 0.242285624637534 0.254906779872478 0.263477763979390 0.249764579399450 0.245833520646225 0.252232712145722 0.259398970556623 0.253711691963087 0.251057834755497 0.248539214937333 0.252052861947277 0.245608266588974 0.255673682602419 0.284322880645442 0.277680453396308 0.245302432700141 4 4|0 -|/ 7000096 7001394 7000554.25 6999890 7003487 - gene protein_coding_gene FALSE TRUE AT4G11560.1 bromo-adjacent homology (BAH) domain-containing protein similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G25120.1); similar to Bromo adjacent re (GB:ABE92119.1); contains InterPro domain Transcription elongation factor S-II, central region; (InterPro:IPR003618); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) -0.143970780580387 -1.30981871559942 0.224946197820827 1 1.58573339664930 15.4527633514918 -0.143970780580387 0.125521693785091
AT3G47250_at 10.6828436649064 10.8786135141580 10.8279402494723 10.8525503029622 11.1928720970984 10.7578305249061 10.6393388071409 10.5861169460267 10.9995576165560 10.6610752836047 10.5307213301270 10.1962457374285 10.3584630203381 10.4928942094025 10.0658064407159 10.5803773622047 10.2270624093831 10.4944025659796 10.7736237111223 0.0879198236852686 0.0873354363285024 0.0916374457568114 0.0881317843990705 0.0884252514088639 0.0955679955310744 0.0873354363285024 0.089112097900525 0.093881576521397 0.0892880774717302 0.088674709914039 0.0873354363285024 0.0887780067907244 0.0890722921870808 0.0885270258889922 0.0873354363285024 0.0948215380956117 0.0936126797708804 0.0886131840104012 3 3 - 17411115 17411665 17411340.636 17410862 17412716 - gene protein_coding_gene FALSE TRUE AT3G47250.1|AT3G47250.2|AT3G47250.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G47200.2); similar to hypothetical protein LOC_Os12g29620 [Oryza sativa (japonica cultivar-group)] (GB:ABA98257.1); similar to Os11g0543300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068043.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) -0.116051087714239 -1.30789739919490 0.225568206368534 1 1.58356843414663 21.3920960157714 -0.116051087714239 0.0831788685638216
AT4G22670_at 8.97381650388703 9.17619461741528 8.77503538394649 8.76123630340605 8.45588183506828 8.14019960513594 8.16462448414677 7.98096643415688 8.66568673987168 8.16689453604617 8.05039772670065 8.28086449062811 8.09573038302729 8.12844147141438 8.23942963297163 8.1436116069257 8.27931318224638 8.31912494187221 8.28055879759915 0.124349677998146 0.114516638660763 0.116043310273594 0.118934422220886 0.119148675344092 0.114149465797001 0.128053643947931 0.118357126031934 0.125033654256616 0.120829344339767 0.116486898542962 0.116437222352139 0.115853629682804 0.122581410460040 0.119084290540105 0.117249417727637 0.126233239302072 0.124021407363847 0.125929371527301 4 4|0 +|/ 11919830 11920616 11920273.1 11918091 11920921 + gene protein_coding_gene FALSE TRUE AT4G22670.1 tetratricopeptide repeat (TPR)-containing protein Identical to FAM10 family protein At4g22670 [Arabidopsis Thaliana] (GB:Q93YR3;GB:O49648); similar to ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT3G17880.1); similar to Os02g0100300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045581.1); similar to ABI3-interacting protein 1; CnAIP1 [Chamaecyparis nootkatensis] (GB:AAP31311.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) -0.109872369855671 -1.30694054099109 0.225878523006409 1 1.58249098945780 16.8350748312182 -0.109872369855671 0.0722972731091229
ATCG00700_at 7.61041189290641 8.4963318840247 8.29065111149913 7.97785941002708 9.02802153924593 7.1836900776149 9.53302025005674 8.22846508080278 9.06331543089967 9.19905710199002 9.10754553449686 9.92856948667922 8.37768831175657 9.1206519514589 8.40610693123835 8.670679517655 7.64671295416054 8.84763967052608 9.33738380373576 0.186484559409266 0.180578716711954 0.183917677500296 0.179863190306777 0.178983479346708 0.202416500392098 0.187872648673354 0.187243154256851 0.188729638655944 0.189202779307136 0.186168107125509 0.189302219826275 0.183561977853370 0.188846946710182 0.180516595486843 0.184493110598227 0.186678316716693 0.188423356538246 0.189934791334009 C C - 74251 74356 74306.818 74249 74380 - gene protein_coding_gene FALSE TRUE ATCG00700.1 PSII low MW protein Identical to Photosystem II reaction center protein N (PSII-N) (psbN) [Arabidopsis Thaliana] (GB:P62113;GB:P12172); similar to photosystem II subunit [Salicornia europaea] (GB:AAO66182.1); contains InterPro domain Photosystem II protein PsbN; (InterPro:IPR003398) -0.391860613239805 -1.30654076461109 0.226008280563065 1 1.58204098069994 17.275115442583 -0.391860613239805 0.423404878833744
AT4G35760_at 9.23962011684885 9.61587476723542 9.29639061932346 9.26781858890827 9.63622450204032 9.13174801122869 10.4080854347670 9.96563573422445 9.20665846716194 8.97422482076422 9.26059127875853 9.15374341531009 9.19541488954938 8.99819046719003 9.07570208954522 9.56546995382223 9.34815441563757 9.21716708921094 8.97117164640204 0.180607949749287 0.175073618508331 0.189953055889187 0.193255752624708 0.177641042482174 0.186352835713443 0.176744774643318 0.183358494218170 0.204839016534459 0.186363852701308 0.180915673823879 0.181213332231821 0.194458720951800 0.189728220773138 0.190228978622235 0.177573423552188 0.196923874887589 0.182617638145993 0.200346603149598 4 4|0 -|/ 16942765 16943710 16943313.3 16942326 16944682 - gene protein_coding_gene FALSE TRUE AT4G35760.1 electron carrier/ protein disulfide oxidoreductase similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55978.1); similar to Os03g0131500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048864.1); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Vitamin K epoxide reductase; (InterPro:IPR012932); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.149069680562570 -1.30588939523344 0.226219834065224 1 1.58130795394328 18.7089193108158 -0.149069680562570 0.133223117077343
AT1G51350_at 6.0167016810456 6.55393778940534 6.46581188696706 6.72455389663625 6.19388786373147 6.37514322220533 6.4668685268179 6.15008894456925 4.46471637122794 5.06636017642075 5.11938312254678 4.86266878723398 5.04843098792717 5.12353184652151 4.89299891205079 5.4835199315829 6.04607531771825 4.24822302477616 5.3652870705843 0.265074202321307 0.257135045870682 0.265387703266145 0.257135045870682 0.260404666282295 0.265368176604792 0.263476855831391 0.288788438409593 0.274437856238632 0.260707616302223 0.258088025803604 0.257135045870682 0.257135045870682 0.261409779385021 0.264028631627010 0.257135045870682 0.265725218585626 0.282012781194609 0.263059577869411 1 1|0 +|/ 19041551 19042373 19042036.5 19039423 19043009 + gene protein_coding_gene FALSE TRUE AT1G51350.1 armadillo/beta-catenin repeat family protein similar to binding [Arabidopsis thaliana] (TAIR:AT2G22125.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94931.2); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.140299716904602 1.30550966207866 0.226343242085096 1 1.58088072397891 11.4026534917751 0.140299716904602 0.120986483755465
AT1G44920_at 9.27254890233174 9.38640776052622 8.95114453782436 9.02304866952323 9.18039781585005 8.76932763711141 9.68807579669298 9.71726500816198 9.31990733287262 9.19628075661197 9.71796153501394 9.65383342466871 9.26903438650793 9.45476501805001 9.79390017137697 9.38227113381325 9.31843110209728 9.3521947888673 9.02374058991695 0.117452986017067 0.120161141430788 0.120856201515517 0.119407960136067 0.116391987847632 0.122406908369901 0.120644259991244 0.122237766270992 0.126288928572171 0.121830925363970 0.119693376986995 0.116187583444243 0.120612187890140 0.121235436144220 0.123991113644700 0.121976303228922 0.122435722281053 0.122733884998004 0.116578096563860 1 1|0 -|/ 16985880 16986573 16986255.375 16985344 16986859 - gene protein_coding_gene FALSE TRUE AT1G44920.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38479.1) -0.111135991634358 -1.30441125945087 0.226700528276794 1 1.57964538000742 18.5849146017610 -0.111135991634358 0.075027678487812
AT2G26800_at 8.81885162713632 8.95623722101127 9.00800672097131 9.122522822886 9.28637894188365 9.20694695281996 9.22983106752223 9.41818402193042 9.38622383878443 9.20332254864481 8.9989699153712 8.68881804563692 9.0223180101313 9.22404849717549 8.61643786334109 9.19711962855819 9.07901081847483 9.16299596867232 9.14424387367404 0.10935828038811 0.105171840901995 0.114529708392188 0.104802913241212 0.101593613016052 0.107684871621856 0.10420536482698 0.102056918561446 0.106866028084866 0.107851791904478 0.111275557267331 0.106966052421297 0.101157614448634 0.108051288443467 0.111294476918513 0.104508125366901 0.117415981875019 0.104890525280538 0.105310868779505 2 2|0 -|/ 11436284 11437569 11436825.8 11436100 11439810 - gene protein_coding_gene FALSE TRUE AT2G26800.1|AT2G26800.2|AT2G26800.3 hydroxymethylglutaryl-CoA lyase, putative / 3-hydroxy-3-methylglutarate-CoA lyase, putative / HMG-CoA lyase, putative similar to MAM1 (2-isopropylmalate synthase 3), 2-isopropylmalate synthase [Arabidopsis thaliana] (TAIR:AT5G23010.1); similar to putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense] (GB:BAE71196.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891)|similar to putative hydroxymethylglutaryl-CoA lyase [Trifolium pratense] (GB:BAE71196.1); contains InterPro domain Pyruvate carboxyltransferase; (InterPro:IPR000891) -0.097847017520378 -1.30399357790371 0.226836515962389 1 1.57917579893119 18.2525257205808 -0.097847017520378 0.0470043403418856
AT1G19050_at 9.05096312224053 9.16240833962385 8.4985112416398 8.56462978045937 9.55402025026966 9.31579255673536 9.26359519371622 9.38164348712839 9.60584739061877 9.3649206131664 10.4762464169830 10.3132970772202 9.9290207930866 9.63511428339623 10.6603095379657 10.0279997407093 9.09440610439873 9.73709348817247 9.69070340392314 0.123895503392389 0.119667916058515 0.124699846577096 0.122110535510366 0.122481353905707 0.124872261137341 0.129067178280839 0.122474336914622 0.136919152389409 0.119146680574871 0.12112890784904 0.122176337371472 0.121703035104381 0.126556162332823 0.123606877676858 0.120471032019295 0.129960075152557 0.130379041342197 0.119057381146582 1 1 - 6577960 6579019 6578678.818 6577824 6579169 - gene protein_coding_gene FALSE TRUE AT1G19050.1 ARR7 (RESPONSE REGULATOR 7); transcription regulator/ two-component response regulator Encodes a member of the Arabidopsis response regulator (ARR) family, most closely related to ARR15. A two-component response regulator protein containing a phosphate accepting domain in the receiver domain but lacking a DNA binding domain in the output domain. Involved in response to cytokinin and meristem stem cell maintenance. Identical to Two-component response regulator ARR7 (ARR7) [Arabidopsis Thaliana] (GB:Q9ZWS7); similar to ARR15 (RESPONSE REGULATOR 15), transcription regulator [Arabidopsis thaliana] (TAIR:AT1G74890.1); similar to Response regulator receiver [Medicago truncatula] (GB:ABE82371.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.099474024635448 1.30324892324066 0.227079129762961 1 1.57833885452100 18.8679503628821 0.099474024635448 0.0511842720993479
AT2G17972_at 7.67926248201494 8.30296172652204 7.5238330212881 7.71296089462707 8.06130509821028 7.67971190886724 8.5146633649745 8.69123949397035 8.37824593177244 8.66219044206855 8.85325544023434 9.3427012626075 8.51553619372274 8.75342325108008 9.24214963494658 8.7496594195829 8.13658667709586 8.64720497949194 8.53876345247208 0.194215864902879 0.191778393159479 0.206027498714611 0.198123756599549 0.183657316361233 0.194087269073407 0.198872380127431 0.188815775335306 0.210575833950107 0.195473459907878 0.1919764576485 0.200859096449133 0.199091545137170 0.190144920045879 0.202019479497842 0.185020784590662 0.197390238254023 0.195466600154561 0.194179594814139 2 2 + 7828718 7829145 7828963.545 7828667 7829412 + gene protein_coding_gene FALSE TRUE AT2G17972.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81091.1); similar to Os06g0715200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058582.1) -0.149457185440701 -1.30293888244712 0.227180207908598 1 1.57799047846241 16.6739745235341 -0.149457185440701 0.134222004014696
AT1G14910_at 7.07294556391068 7.33684294305257 6.8799963557167 6.93955311098853 6.97836226771892 6.56583496259922 6.87041135361057 6.68787734334295 7.0796510206508 6.3684150031527 7.06896475135865 7.47759557953171 7.10724019250331 7.05469996608079 7.64485911142358 6.95643241243486 6.34962223288101 7.08029586392616 6.65448354345772 0.207643403761731 0.194614422524531 0.206522011083966 0.201748400590805 0.203632710374904 0.199196164209413 0.195297274910074 0.197378544897984 0.216652440227770 0.200310597671837 0.194043385129139 0.197692911346933 0.204646735352567 0.214486817058885 0.203906748494577 0.194043385129139 0.223711798697947 0.209836345160253 0.208469295038313 1 1 - 5139973 5140480 5140262.091 5139707 5143684 - gene protein_coding_gene FALSE TRUE AT1G14910.1 epsin N-terminal homology (ENTH) domain-containing protein Identical to Putative clathrin assembly protein At1g14910 [Arabidopsis Thaliana] (GB:P94017;GB:Q8L644;GB:Q9LQU0); similar to epsin N-terminal homology (ENTH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01600.1); similar to Os01g0694900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043956.1); similar to Carbamoyl-phosphate synthase L chain, ATP-binding; ANTH [Medicago truncatula] (GB:ABE84582.1); similar to Os05g0549000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056232.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.120265640645209 1.30259403777039 0.227292677323532 1 1.57760305738088 13.8131347973781 0.120265640645209 0.0910284435885495
AT3G13570_at 7.98735160186909 7.68911928772225 7.6602011115075 7.39111276007835 7.62058415088357 7.50606052190954 7.7841790305038 8.1255045425706 7.5030497481125 7.12326842745657 7.30809133389644 7.5188691227837 7.31550755859436 7.74865307300428 7.38214320356729 7.36089816107347 7.4224229912138 7.16286937995106 7.25469179044339 0.187573099820164 0.185294535517730 0.189554218177502 0.198008206444205 0.189344288770238 0.199134703878773 0.189320621328406 0.194973429456870 0.185294535517730 0.192204851888792 0.192619799501214 0.185294535517730 0.191476652660286 0.196261265168918 0.195666258484243 0.185294535517730 0.190906243137710 0.196151951085521 0.197793497774333 3 3 - 4429621 4431060 4429955.909 4429305 4432166 - gene protein_coding_gene FALSE TRUE AT3G13570.1 SCL30a (SC35-like splicing factor 30a); RNA binding encodes an SC35-like splicing factor of 30 kD that is localized to the nuclear specks. similar to SR33 (SC35-like splicing factor 33), RNA binding [Arabidopsis thaliana] (TAIR:AT1G55310.2); similar to RNA-binding re (GB:ABE89154.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.121643557615981 -1.30205202084723 0.227469548593433 1 1.57699425257546 15.0685650467213 -0.121643557615981 0.093348486584137
AT1G22280_at 9.86479007409516 9.30936308168986 9.9519111832838 9.24560670341737 10.0511365279954 8.81921081796202 9.08987698002584 7.75332497904421 9.0084876987813 8.69265670720672 9.10853994437874 9.1101965409237 8.91920019332714 9.07819991968697 8.73519104371291 8.77592699878286 8.86910855204584 8.66611216115792 8.59652046137604 0.130387595983637 0.136658127435176 0.131215836386582 0.130802146601477 0.131201697916398 0.135588185443906 0.133218039225049 0.141333488935958 0.1400965055383 0.131028506202611 0.129671518003247 0.131769497880078 0.131047912924609 0.128030526690164 0.135845346070360 0.130224152576177 0.136743843997586 0.141088703347593 0.138417030995256 1 1 + 7874606 7875458 7874970.727 7873922 7875867 + gene protein_coding_gene FALSE TRUE AT1G22280.1|AT1G22280.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G34750.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.32727432979077 1.30166794411401 0.227594951110551 1 1.57656294758599 18.0975013976259 0.32727432979077 0.350894837263651
AT4G39350_at 8.65587790727153 9.08937911291692 8.41807031107919 8.66576141649236 9.29511192045543 9.0449588363224 9.83940857727124 9.72470933832027 10.1769534109249 9.93409301865648 10.6099178979867 10.4410169825922 10.0126386245251 10.4368136038778 10.2250078186663 10.2259077674420 9.71518432737968 10.3580788368964 9.98371164236368 0.137342667343838 0.123236609955207 0.132312712880971 0.130556735652511 0.121021769191812 0.127919923649542 0.121209670059172 0.119048561476297 0.123234357228003 0.118305964238003 0.119483697992471 0.121032467634043 0.121806559609171 0.124133870385019 0.120740424124259 0.118305964238003 0.132249770596954 0.124286366321967 0.12060139555866 4 4 + 18301313 18301813 18301630.182 18296903 18302186 + gene protein_coding_gene FALSE TRUE AT4G39350.1 CESA2 (CELLULASE SYNTHASE 2); cellulose synthase/ transferase, transferring glycosyl groups Encodes a cellulose synthase catalytic subunit. Identical to Cellulose synthase A catalytic subunit 2 [UDP-forming] (EC 2.4.1.12) (AtCesA-2) (Ath-A) (CESA2) [Arabidopsis Thaliana] (GB:O48947); similar to CESA6 (CELLULASE SYNTHASE 6), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G64740.1); similar to CESA5 (CELLULASE SYNTHASE 5), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G09870.1); similar to CESA9 (CELLULASE SYNTHASE 9), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G21770.1); similar to cellulose synthase [Populus tremula x Populus tremuloides] (GB:AAT09898.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25581.1); similar to Zinc finger, RING-type; Cellulose synthase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE92734.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.124941702209282 -1.30164721500741 0.227601720903579 1 1.57653967182516 19.2339880557174 -0.124941702209282 0.0986573482677118
AT4G36640_at 5.90414967624983 6.16752286363372 6.43278290871771 6.52408565305153 5.81369314055699 5.29570576622604 5.60893488146001 5.45892449889571 3.72928430834956 4.61258182412828 4.09118966663747 4.0088365254354 4.29230085779225 4.58623712534594 3.59926304781563 4.15975554032545 4.77903495055281 4.25324961292224 4.24269505407077 0.217263178383313 0.22198332571111 0.227628682899953 0.225882288044596 0.224888427502847 0.23156361772887 0.222647177303913 0.217263178383313 0.241671723302324 0.222820831067177 0.220102722977850 0.222973516635901 0.21729414335115 0.226860012479227 0.233166460814178 0.222056182174339 0.227504009878506 0.233636607603068 0.217263178383313 4 0|4 /|- 17277226 17277798 17277617 17276941 17279206 - gene protein_coding_gene FALSE TRUE AT4G36640.1|AT4G36640.2 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to transporter [Arabidopsis thaliana] (TAIR:AT1G75170.2); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE78877.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071)|similar to transporter [Arabidopsis thaliana] (TAIR:AT1G75170.2); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE78877.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.129031787041055 1.30115544668596 0.227762374422980 1 1.57598755731914 10.1087684959504 0.129031787041055 0.105053683085926
AT1G69740_at 9.67741386475508 9.82364013074862 9.73420687564067 9.69709073850728 9.86159338028752 9.74865795289158 9.94631115665113 9.87518357558576 10.0114808890797 9.74593157318052 10.1498917170235 10.2520485128702 9.78745864063765 9.88626029402901 10.4129557820394 10.1073974589562 9.75330525292655 10.0789281912466 9.63202451108398 0.0929642054482327 0.0908043085835436 0.0936161241265342 0.0894929209785871 0.0899361494332713 0.0916866581704353 0.0901275264513647 0.0913138347945942 0.0979495791339446 0.0914232149119648 0.089554707268748 0.0892706367871821 0.090670990901795 0.0907049322538551 0.0911994900376167 0.0898215276870547 0.091970745974782 0.0887743390127517 0.0916326329288057 1 1|0 +|/ 26237533 26238341 26237875 26235467 26238626 + gene protein_coding_gene FALSE TRUE AT1G69740.1|AT1G69740.2 HEMB1; porphobilinogen synthase|HEMB1 Identical to Delta-aminolevulinic acid dehydratase, chloroplast precursor (EC 4.2.1.24) (Porphobilinogen synthase) (ALADH) [Arabidopsis Thaliana] (GB:Q9SFH9); similar to HEMB2, porphobilinogen synthase [Arabidopsis thaliana] (TAIR:AT1G44318.1); similar to Delta-aminolevulinic acid dehydratase, chloroplast precursor (Porphobilinogen synthase) (ALADH) (GB:P43210); similar to aminolevulinate dehydratase (GB:2114378A); similar to aminolevulinate dehydratase [Raphanus sativus] (GB:AAK15323.1); contains InterPro domain Delta-aminolevulinic acid dehydratase; (InterPro:IPR001731) 0.0934008974990108 1.30063423717691 0.227932750486888 1 1.57540253453697 19.7205170705489 0.0934008974990108 0.0348580689409248
AT3G61970_at 4.60722013735523 4.93902542196059 4.61057958797566 4.8582034556814 4.94118472328305 5.1823284571508 4.7850303374115 4.82710890503859 4.88306806370405 4.51871262997749 5.14469674604832 5.16415293331927 5.62159431830579 5.44016762458905 4.66943952790968 5.24459301944167 4.26546147253172 4.4378335837633 5.22662264568524 0.198680856028043 0.199848971339394 0.201463477388908 0.208508887832678 0.199965532168503 0.220934014776397 0.198743566756052 0.200739541869278 0.214106044650295 0.20296005593054 0.197885408460861 0.202128729256575 0.201088171111593 0.204003508002574 0.212167915495218 0.197885408460861 0.212174956818981 0.221190144543559 0.201588642233604 3 3 + 22963115 22963636 22963358.455 22962438 22963826 + gene protein_coding_gene FALSE TRUE AT3G61970.1 NGA2 (NGATHA2); transcription factor similar to NGA1 (NGATHA1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G46870.1); similar to Os03g0120900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048792.1); similar to putative DNA-binding protein [Oryza sativa (japonica cultivar-group)] (GB:AAM76357.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) 0.115417906182128 1.30039870449644 0.22800977811158 1 1.57513821408350 9.7811485530792 0.115417906182128 0.0832342981211458
AT1G66660_at 4.91392259426616 5.29783840387629 5.09034310048584 5.15575051469300 6.02962511285817 5.59898065537807 5.5272324655675 5.08307744329573 4.74684178228978 4.57126669345946 4.12299423956381 4.38958962993854 4.55469035340099 3.99351100292819 4.15315745516144 4.47399952326873 4.10699924858048 4.20973518415436 5.08466459524178 0.269952150862921 0.261729152081321 0.254871152091249 0.253368961615085 0.260166209881842 0.26020532313324 0.258394130928685 0.258308627284684 0.253368961615085 0.2581039733883 0.253368961615085 0.260669580158215 0.253368961615085 0.263852030351623 0.254394878169709 0.255639929613328 0.253368961615085 0.253368961615085 0.253368961615085 1 1 - 24865790 24866273 24866089.818 24865539 24867031 - gene protein_coding_gene FALSE TRUE AT1G66660.1|AT1G66660.2 seven in absentia (SINA) protein, putative|protein binding / zinc ion binding similar to seven in absentia (SINA) protein, putative [Arabidopsis thaliana] (TAIR:AT1G66650.1); similar to SIAH2 protein [Brassica napus var. napus] (GB:CAB89184.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010) -0.143591329135047 -1.30001740926912 0.228134521905570 1 1.57471038034889 9.86285075461338 -0.143591329135047 0.126507316463303
AT1G19000_at 10.8555763510892 11.0295211834347 10.9753226845695 11.0630087302190 11.2603663084177 11.2672092242521 11.5990121143434 11.6608340228402 11.1957108248367 11.3720968128435 11.4033030243739 11.1216684085715 11.3722628573222 11.2093727144910 11.1472853591997 11.2322993309873 11.3331144455232 11.2513997591467 11.3354570562559 0.0764111765286707 0.071178658346979 0.0742670332756614 0.072771281014949 0.0717237482006486 0.0736655503814072 0.0705881738361469 0.075399762741148 0.0751160911698278 0.0737720830855206 0.0715340913665715 0.0732142218519676 0.0716545005629495 0.0734704656464651 0.0768607452596963 0.072994351753954 0.0733569258582962 0.0754321895073776 0.0763848794027018 1 1 - 6561359 6562003 6561547.909 6560783 6562777 - gene protein_coding_gene FALSE TRUE AT1G19000.1|AT1G19000.2 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G74840.1); similar to Putative DNA binding protein, identical [Lycopersicon esculentum] (GB:AAX95766.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0935045874611875 -1.29984915534154 0.228189585849864 1 1.57452161594725 22.4938195617777 -0.0935045874611875 0.0353872123884212
AT4G30890_at 8.25569917964955 8.35986402301361 8.13938145532129 8.24234971372135 8.2663285987877 8.09126639669582 7.9247309652919 7.86417163042398 7.59131706669792 7.15969826961377 7.54012535446545 7.56458896480761 7.57273699430995 7.43441581668107 7.34579384733549 7.73840749154349 7.39190980735737 6.85137541852997 7.21819527160225 0.180124521720660 0.184007499566601 0.187521404944479 0.193602025340357 0.193544111748602 0.177363733741768 0.194487731720545 0.180800562988513 0.187779710536807 0.190421762593094 0.177483046149218 0.174903193208613 0.179063204243309 0.204012149250933 0.178524649290036 0.176607252625064 0.184335385540068 0.192386564881486 0.188678764567577 4 4|0 -|/ 15036393 15037225 15036731.8 15036102 15039269 - gene protein_coding_gene FALSE TRUE AT4G30890.1|AT4G30890.2 UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT1G17110.1); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAC83574.1); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.095282050388801 1.29980186982214 0.228205062855834 1 1.57446856904947 15.5194687026215 0.095282050388801 0.0408669182067349
AT3G02130_at 6.82621176452989 6.67365026492823 6.29722315585521 6.58350327032024 6.99869367337014 7.10409479282054 6.77035597248216 6.80016210860337 6.93887467467831 6.60354632430248 6.8579427010007 6.77252070404147 6.76861039854721 6.55877960720033 6.31214902511083 6.91402750404682 6.73099719607563 6.50064118275460 7.03957767222044 0.151144815118229 0.146799688768564 0.157657192512475 0.151642347795262 0.147616089252148 0.147415045225493 0.153505510658389 0.152000213591366 0.155337180201144 0.149920991532856 0.151664739863752 0.144638730537316 0.14771817773667 0.145707446019482 0.151476907463757 0.146533111485838 0.149593494350757 0.155569420461456 0.143909058567971 3 3 + 383637 384115 383894.273 381226 384449 + gene protein_coding_gene FALSE TRUE AT3G02130.1 leucine-rich repeat transmembrane protein kinase, putative similar to RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G69270.1); similar to leucine-rich repeat-containing protein kinase family protein [Musa acuminata] (GB:ABF72006.1); similar to Os07g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060207.1); similar to putative protein kinase [Sorghum bicolor] (GB:AAM47583.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.102711994215459 -1.29919298024853 0.228404437471878 1 1.57378560138440 13.5255492571542 -0.102711994215459 0.0592517326476829
AT4G02840_at 7.04808677869718 7.6199466471335 7.26206411818164 7.2914591119385 8.03904026601763 7.55359306787498 7.42031279826374 7.53010549819573 7.2138368938715 7.44162308342044 7.89642874456555 7.97226720488666 7.50264005664039 7.51368259173572 7.47941286586281 7.3757813852672 7.08755133667113 7.18358669646226 7.36377498236118 0.180655901352087 0.178571679388962 0.182641538583422 0.184688819965505 0.178571679388962 0.186978680601641 0.183049498177694 0.188232647783354 0.198272000401147 0.190467257340173 0.179932587361438 0.183547016390207 0.182788172262429 0.182390262992336 0.179661103407166 0.185145295906536 0.197164534752111 0.197247706749176 0.186768523036930 4 4|0 +|/ 1264898 1266190 1265811.2 1264627 1266486 + gene protein_coding_gene FALSE TRUE AT4G02840.1 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative similar to small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative [Arabidopsis thaliana] (TAIR:AT3G07590.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE77444.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.14680004207054 1.29817019984673 0.228739667289154 1 1.57263885009197 14.8911579591941 0.14680004207054 0.131293779704204
AT3G27320_at 6.61757027901864 6.42700662771886 5.99946234134376 5.93837855450344 6.60774723362585 6.81210797565203 6.41423801072412 6.50152890787988 6.12072379095157 5.81000823754388 6.4790432140274 6.20276403581439 6.25280681978818 5.97975117026402 6.34027468914938 6.62153016547409 5.88752073065108 6.03497278678378 5.69594960703738 0.210668321830285 0.203259809111152 0.207077097580068 0.204902691194012 0.201724496992993 0.205947044472924 0.202758619329368 0.204039521361623 0.214142530192205 0.200139029820744 0.20330011967885 0.205419319045435 0.211922316804441 0.205599658174196 0.205552677549581 0.202271864998427 0.209096510983583 0.203372576075741 0.207654197866862 3 3|0 +|/ 10092334 10093541 10093273.1 10091302 10094028 + gene protein_coding_gene FALSE TRUE AT3G27320.1|AT3G27320.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14310.1); similar to CXE carboxylesterase [Actinidia deliciosa] (GB:ABB89022.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-3; (InterPro:IPR013094) 0.0993052381311611 1.29794450916070 0.228813696295490 1 1.57238588148708 12.4649517396441 0.0993052381311611 0.0517513737720453
AT3G50250_at 5.68884323123638 5.21099612204284 5.3672976101226 4.72033150848292 4.98165740461472 5.40162579824124 4.95380602187499 4.56506414898173 6.6763167456768 6.139009925523 7.33056175591227 5.64206211035581 6.55219415236478 6.5924268696091 7.11445491697809 6.31759327181721 6.61884600193155 6.37774672139858 5.87051401752901 0.332895165817498 0.315672859652737 0.300246181859611 0.300246181859611 0.316399080091199 0.300246181859611 0.300246181859611 0.311751782040107 0.308249053963664 0.300246181859611 0.306578234075391 0.316837944349225 0.300246181859611 0.301951480965575 0.309174007941791 0.300246181859611 0.320173762261124 0.314753241973212 0.310361937822281 3 3 - 18641105 18641377 18641196.5 18641014 18641460 - gene protein_coding_gene FALSE TRUE AT3G50250.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19270.1) 0.176336430733853 1.29731772720497 0.229019393653847 1 1.57168349200858 11.5096273746774 0.176336430733853 0.170824913074582
AT1G30880_at 9.21564330141594 9.53433766744745 9.01228169644955 9.18281733083043 9.71085764926134 9.6196661655041 8.95105974035894 8.84454775202097 9.36753396602458 9.10154149887981 9.16824140085548 8.90967399496528 9.1277059481937 8.88135622832898 8.86528134911932 8.89995131993417 8.83335094344589 8.74072279593175 9.68891824066539 0.133657035128901 0.135314121093804 0.131373825047364 0.132108106489669 0.13652765992582 0.138074727660115 0.133677960930561 0.131114310152363 0.146976862161905 0.12724519434774 0.130350525114919 0.133417777430378 0.131523476183421 0.133329042302582 0.130406653469664 0.130149821649029 0.136132934093380 0.140395343856048 0.126766023239802 1 1 - 10993366 10993947 10993660.545 10993176 10994106 - gene protein_coding_gene FALSE TRUE AT1G30880.1 similar to Os04g0611300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053837.1); similar to OSJNBa0085I10.17 [Oryza sativa (japonica cultivar-group)] (GB:CAE03572.2) -0.106351904529621 -1.29716645447103 0.22906906171739 1 1.57151400413455 18.4160431126378 -0.106351904529621 0.0670928249022134
AT2G13370_at 7.77638118955017 7.68953495686055 8.07470442339996 8.01748106640983 8.0653739619785 7.88139168773612 7.45942195597993 7.5410479929529 7.66027475749641 7.52600072684903 7.4823569602322 7.53590471836467 7.34988119467222 7.36497102283501 7.00027295119281 7.70401226392482 7.86015535577714 7.011030143406 7.66712815343157 0.169939255997474 0.172368663548169 0.175289288777277 0.173169310554439 0.174778375514779 0.180590734824684 0.170562002696259 0.168871935014096 0.179029863456209 0.169433309426415 0.177616007547786 0.171829465031265 0.168546104938863 0.17635210275116 0.176638426988586 0.171116433855582 0.169906121718221 0.170672062436617 0.175489610742514 2 2 - 5551696 5552415 5551900 5551263 5563546 - gene protein_coding_gene FALSE TRUE AT2G13370.1 CHR5 (chromatin remodeling 5); ATP binding / DNA binding / chromatin binding / helicase similar to PKL/SSL2 (PICKLE, SUPPRESSOR OF SLR2) [Arabidopsis thaliana] (TAIR:AT2G25170.1); similar to SNF2-related; Chromo; DEAD/DEAH box helicase, N-terminal; DNA-directed RNA polymerase, subunit beta-prime [Medicago truncatula] (GB:ABE84348.1); similar to Helicase, C-terminal; Homeodomain-like [Medicago truncatula] (GB:ABE84346.1); similar to PREDICTED: similar to Chromodomain-helicase-DNA-binding protein 2 (ATP-dependent helicase CHD2) (CHD-2) isoform 3 [Mus musculus] (GB:XP_982327.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Chromo; (InterPro:IPR000953) 0.0944565623767462 1.29619724225925 0.229387503228693 1 1.57042838758811 15.3288542988050 0.0944565623767462 0.0392071249519263
AT4G35250_at 10.6243035573274 10.5667362634989 10.7515895241778 10.5306884940520 10.5742596975441 10.6042724960304 11.5232349688501 11.5627179922751 11.5160040221338 11.3460035509922 11.7201809428651 11.7566802311049 11.6015210173445 11.7632854383016 11.6631502820729 11.9156277819639 11.4362302646257 11.7128990363294 11.4328875788081 0.0913703080845185 0.0883346446545477 0.0890891887617466 0.0903268585023145 0.086862225786289 0.0904358243758428 0.0860992362575829 0.0862321334296549 0.0923806398556348 0.0897628438319004 0.0873798245425785 0.0851825261980689 0.0851825261980689 0.0865515766110259 0.0891874644793375 0.0851825261980689 0.0914507505758419 0.0851825261980689 0.0879338300528156 4 4|0 -|/ 16771415 16772351 16771912.625 16771176 16773369 - gene protein_coding_gene FALSE TRUE AT4G35250.1 vestitone reductase-related similar to DVR (PALE-GREEN AND CHLOROPHYLL B REDUCED 2), 3,8-divinyl protochlorophyllide a 8-vinyl reductase [Arabidopsis thaliana] (TAIR:AT5G18660.1); similar to hypothetical protein MtrDRAFT_AC121239g27v1 [Medicago truncatula] (GB:ABE78447.1); contains InterPro domain NmrA-like; (InterPro:IPR008030) -0.0947402427610948 -1.29446697052813 0.229956924406302 1 1.56849160261412 22.4061396700382 -0.0947402427610948 0.0404263012530565
AT1G22620_at 8.16944381334577 7.78217692878105 7.56492987534566 7.50293759906155 8.01519810379502 7.72228458642733 7.11614295449851 6.87414206425578 6.76058170554242 7.05772755280364 6.78501317161905 6.55151676182087 6.61744991264252 7.06497266643129 6.55334381748531 6.81065885669637 7.17655135264483 6.72860090807105 6.45788698454091 0.195006609749333 0.19601592352265 0.202586598124351 0.193131972607960 0.190735220098566 0.205965136924231 0.183440708714739 0.186810726679118 0.192647045629810 0.191703556431203 0.187042843445932 0.191371629876200 0.191119864091058 0.183440708714739 0.193764384678836 0.187693774856858 0.185849539109111 0.188436533742757 0.189702190060946 1 1|0 -|/ 7997899 7998682 7998339 7997665 8002933 - gene protein_coding_gene FALSE TRUE AT1G22620.1 ATSAC1 (SUPPRESSOR OF ACTIN 1); phosphoinositide 5-phosphatase SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization. similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G20840.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G43220.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G14205.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); similar to Os08g0109100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060808.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.121571225450598 1.29367768514652 0.230217068597785 1 1.56760866596932 14.3657797466332 0.121571225450598 0.094498216748288
AT3G43740_at 6.49029355796908 6.82396402085875 6.5002668890341 6.86649341486591 6.79322825046841 6.26641044207788 6.51711865179978 6.6518582447821 6.3816733602502 6.30402229743795 7.13734635221734 7.06177704132075 6.6841766095917 6.80318946392506 6.8545435656714 6.70082352472303 6.07993712212781 5.71483137384476 6.30106153605085 0.211671299657748 0.208425979667753 0.224498782772534 0.206999019859938 0.213975482402453 0.215471116882044 0.213649593211878 0.215579013479287 0.242073855513673 0.211345803529441 0.206999019859938 0.206999019859938 0.207405174641737 0.214660970098516 0.224788409508511 0.212093906349953 0.219273689213079 0.24632707080085 0.214301133683441 3 3|0 +|/ 15655312 15656407 15655867.9 15655041 15656649 + gene protein_coding_gene FALSE TRUE AT3G43740.1|AT3G43740.2 leucine-rich repeat family protein similar to leucine-rich repeat protein, putative [Arabidopsis thaliana] (TAIR:AT5G21090.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABE82625.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.143225098678605 1.291614311535 0.230898317245157 1 1.56530210383677 13.0929527821107 0.143225098678605 0.127303980063842
AT1G63240_at 5.89318063866332 6.28063048101304 5.41355974177892 5.16120675223918 5.90872661035958 6.2867686905276 5.90342738732844 5.87363587699195 5.33383101361444 5.82921806996814 6.79235370944285 6.56585826532634 5.83700642580165 6.28969836671232 6.27314083130598 6.02082303889578 5.60548095106676 6.25111384209151 5.80258041827892 0.212429717282658 0.218659376543654 0.204986300000070 0.206667335403806 0.215675296969191 0.202837834983312 0.203763729418265 0.209314460557680 0.211187286748826 0.205409738583785 0.20868138053228 0.204867642307103 0.202871302442503 0.202837834983312 0.208429691846044 0.206292785092863 0.228638821692227 0.216104343869510 0.202837834983312 1 1 - 23459883 23460423 23460106.273 23459686 23462326 - gene protein_coding_gene FALSE TRUE AT1G63240.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to glutamic acid-rich protein cNBL1700 [Trichinella spiralis] (GB:AAM19760.1) 0.127035723801849 1.29128633517492 0.231006759011648 1 1.56493569070723 11.7699641537549 0.127035723801849 0.103486509556627
AT1G03030_at 6.24577268701113 6.79988278635752 6.50713324399236 6.70660843366155 6.93121427613462 5.6962985149699 6.58335485219326 6.84139930545092 5.67974863090796 6.08348683698968 5.7019598330761 5.63109257618176 5.13118685600806 5.73092712625741 5.42614509874621 5.81966456982348 5.34694005230924 5.74610887743603 5.85578467572067 0.250664587834441 0.248362535163354 0.254361639467976 0.249452336667325 0.258245175802789 0.255329461291487 0.256640693086178 0.261543420994657 0.252009167511648 0.247636081881967 0.247836207251372 0.251796281592437 0.247636081881967 0.254215345378928 0.249713835131596 0.247636081881967 0.262901979720933 0.248445358687579 0.252903005366875 1 1|0 +|/ 702354 703487 702755 701478 703864 + gene protein_coding_gene FALSE TRUE AT1G03030.1 phosphoribulokinase/uridine kinase family protein similar to Os12g0601200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067208.1); similar to phosphoribulokinase/uridine kinase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99792.2); contains domain URIDINE CYTIDINE KINASE I (PTHR10285:SF6); contains domain URIDINE KINASE RELATED (PTHR10285); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540); contains domain no description (G3D.3.40.1070.10) -0.231771190686626 -1.29111834913730 0.231062318351503 1 1.5647480409824 12.2588379316060 -0.231771190686626 0.240939840839229
AT4G17040_at 10.8945021879935 11.0780045111947 11.1398881768673 11.0619035906993 11.5736795639379 11.2138908819315 11.2710970132312 11.1318460776577 11.0340084721384 10.8144289775609 11.1235989607234 10.9336816013806 10.8911412400562 10.9956362652901 10.9854226177655 11.0680815001606 10.8123275203740 10.9696199488647 10.8691187559836 0.109704158716767 0.105442838857192 0.112234023290133 0.111653988409439 0.111207590823151 0.116644022675290 0.112766901361384 0.116619923695245 0.122428547048729 0.107825113384310 0.111472170911251 0.111918520161228 0.105308044847830 0.114385984423826 0.109448502264401 0.107375360919733 0.114913242929328 0.110042749601330 0.108416481909147 4 4|0 -|/ 9586964 9588265 9587743.1 9585724 9589381 - gene protein_coding_gene FALSE TRUE AT4G17040.1 ATP-dependent Clp protease proteolytic subunit, putative similar to endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G09130.2); similar to putative ATP-dependent Clp protease proteolytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD81195.1); similar to Os01g0271400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042707.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.110032372052818 1.29066114407065 0.231213590365141 1 1.56423739724882 22.1097468881331 0.110032372052818 0.0751530434376197
AT3G21640_at 6.66928745390534 7.25844183262427 6.89648417614395 6.87854115490282 6.6640990815441 6.35360317373207 5.77770465625634 5.8807684484835 5.32403572692984 5.62479494434437 5.99998760487445 5.49940474312751 5.59394186147919 5.59332433599505 5.71418363562635 5.67646167827714 5.63439212239485 5.20129757449327 5.98425183299983 0.225164957088084 0.224169251048446 0.222576097042968 0.221911465714709 0.228036256188028 0.229463089254687 0.221911465714709 0.223244986397157 0.239448514657137 0.225612252936945 0.221911465714709 0.221911465714709 0.221911465714709 0.227153812630233 0.229334973833894 0.222846059014073 0.239234904507464 0.233536067616620 0.226962434771995 3 3 - 7619042 7619568 7619330.455 7618937 7621484 - gene protein_coding_gene FALSE TRUE AT3G21640.1 TWD1 (TWISTED DWARF 1); FK506 binding / peptidyl-prolyl cis-trans isomerase encodes a 42 kDa FK506-binding protein (AtFKBP42) that possesses similarity to multidomain peptidyl-prolyl cis/trans isomerases (PPIases, EC 5.2.1.8), which are known to be components of mammalian steroid hormone receptor complexes. The protein appears to be localized to the plasma membrane by electron microscopy and binds to HSP90.1 and calmodulin in vitro. It also aggregates citrate synthase in vitro but does NOT show PPIase activity in vivo. Mutants are reduced in size and exhibit disoriented growth in all organs. Identical to 42 kDa peptidyl-prolyl isomerase (EC 5.2.1.8) (Peptidyl-prolyl cis- trans isomerase) (PPIase) (Rotamase) (Protein TWISTED DWARF1) (Protein ULTRACURVATA2) (FKBP42) [Arabidopsis Thaliana] (GB:Q9LDC0;GB:Q8RWM0); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91481.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.135697329269416 1.29032140378807 0.231326051685656 1 1.56385802323393 12.1766087618448 0.135697329269416 0.116661780911041
AT1G36390_at 5.70398791532599 6.4192625697761 5.76757738271881 5.57414525612023 6.34782238568135 5.3663998277207 7.01842960099574 6.69826906595872 5.93751402227439 6.52625291129732 7.11796668986383 7.52631727400248 6.067704375355 6.74723228444715 7.19038184808757 6.74335260649339 5.34118584787142 6.08756596507171 6.54270734410619 0.243503269035014 0.233775195253278 0.243555868329711 0.233775195253278 0.233989360116837 0.247674634943413 0.234183568770737 0.243925301303914 0.247475988879338 0.24076167636886 0.236265836379035 0.236506445320264 0.235089912017876 0.252724026080686 0.236017103579106 0.235775062275364 0.244744084259029 0.245969105923543 0.239749459587894 1 1|0 -|/ 13703025 13704387 13703636 13702613 13704784 - gene protein_coding_gene FALSE TRUE AT1G36390.1|AT1G36390.2 co-chaperone grpE family protein similar to EMB1241 (EMBRYO DEFECTIVE 1241), adenyl-nucleotide exchange factor/ chaperone binding / protein binding / protein homodimerization [Arabidopsis thaliana] (TAIR:AT5G17710.2); similar to co-chaperone CGE1 precursor isoform b [Chlamydomonas reinhardtii] (GB:AAK96224.1); similar to Os04g0431100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052822.1); similar to Os02g0612000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047409.1); contains InterPro domain GrpE protein, head; (InterPro:IPR009012); contains InterPro domain GrpE protein; (InterPro:IPR000740) -0.214389569723717 -1.29029125321756 0.231336034395859 1 1.56382435844183 12.5810891441831 -0.214389569723717 0.219903852571108
AT1G78370_at 11.285701480935 11.3317388974885 10.3554318240944 10.3267212160132 10.5285267203507 10.4681937265127 11.5198276261609 11.8701219097752 10.3048876436771 11.8112880501470 12.1306738226802 12.2317421902268 11.8122673076133 12.1196725227060 11.9505178056059 11.6156471957609 11.7051675841644 12.0773143079930 11.1233148090490 0.0836683454511937 0.0805069719207487 0.0833241788696801 0.0842847802416104 0.0819574261054858 0.082641196911224 0.0816619514617997 0.0809450926424456 0.0971695347263238 0.0824734430856691 0.0840061375183639 0.0804623425082474 0.0804623425082474 0.0832313302684411 0.0852803754577827 0.0804623425082474 0.0855133128171045 0.0804623425082474 0.0812405230697832 1 1|0 -|/ 29489361 29489964 29489697.1 29489162 29490183 - gene protein_coding_gene FALSE TRUE AT1G78370.1 ATGSTU20 (Arabidopsis thaliana Glutathione S-transferase (class tau) 20); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G78380.1); similar to glutathione S-transferase [Brassica napus] (GB:ABD36807.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.103291966188856 -1.28891318279265 0.231792694214934 1 1.56228620771636 22.4783856800254 -0.103291966188856 0.0622251001740852
AT3G57320_at 4.96075907430342 5.74565181493168 5.12834020893414 5.00896344989714 6.26771671646267 5.51604713292298 6.63663861609843 6.73837038301876 6.2833433599218 7.08908907787229 7.40607549810966 6.5918291022354 6.80927421214774 7.19295961394864 6.8181944226903 6.94529283852298 6.61158758695127 6.78328037009841 6.83253082386068 0.263471082973477 0.257127229782069 0.258745840102959 0.261647970375971 0.252076979230768 0.259179371614456 0.251907776498272 0.258207628316808 0.259130631111436 0.258697738624508 0.253740052367577 0.250422859089612 0.250422859089612 0.251425413389357 0.251878222230446 0.250422859089612 0.269536926171694 0.256768020103735 0.257130173106205 3 3|0 +|/ 21221076 21221601 21221378.222 21220936 21221842 + gene protein_coding_gene FALSE TRUE AT3G57320.1|AT3G57320.2 |unknown protein similar to Os07g0661700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060540.1)| -0.190132071665357 -1.28851522556836 0.231924708893214 1 1.56184222013556 12.5652106543076 -0.190132071665357 0.190018744355330
AT3G52230_at 10.2474905372428 10.4229478880106 10.3727571983329 10.5984194903935 10.5055648854738 10.5972875530651 10.9572609010359 11.1379548993200 10.7152729175035 10.7314542718790 10.5528069445615 10.4112960984002 10.5782022173028 10.7309279354808 10.5338720613769 10.6854145251218 10.7457969278767 10.5564018496645 10.4475587910996 0.0751437465252536 0.0765464805525126 0.0785334531489896 0.0787605570127706 0.0747891624847575 0.0767158818430003 0.0767161437949014 0.0775365338432277 0.0795629930031676 0.0792477765156832 0.0751976302863736 0.0747891624847575 0.0806244508110088 0.0760466351074306 0.0778757803194141 0.0747891624847575 0.075758086550143 0.0795574513403009 0.0794657931040392 3 3|0 +|/ 19382331 19383246 19382597 19382191 19383656 + gene protein_coding_gene FALSE TRUE AT3G52230.1 similar to E24 ASN [Spinacia oleracea] (GB:CAA56654.1); similar to chloroplast outer envelope 24 kD protein (omp24) [Spinacia oleracea] (GB:CAA53243.1) -0.102497557386771 -1.28835834799062 0.231976767406134 1 1.56166722138916 21.2203446591763 -0.102497557386771 0.0606363689676782
AT1G07080_at 10.5703276068555 10.7627139407960 10.7656813858681 10.9347588315198 10.7780322772197 10.7382154843200 10.7270052123723 10.979177948149 10.6440571736872 10.7358188307499 11.0070635967422 10.8007595987938 11.0754782671534 10.8318644698454 10.7905115260969 10.9118826479140 10.7571822455573 10.8209886458222 10.7564909354508 0.0856439975449858 0.0797688854899682 0.0809954257352012 0.082890453181031 0.0800869007556296 0.0820963322396101 0.082747905219628 0.0827555723741488 0.0938962933308645 0.0823020465107502 0.085271235874813 0.0796570491962492 0.0809230194537852 0.083571543483567 0.0894966186397156 0.0793478949245498 0.088828371453994 0.0890099848847298 0.0806618205794792 1 1|0 +|/ 2170272 2171827 2171077.1 2169981 2172193 + gene protein_coding_gene FALSE TRUE AT1G07080.1 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein similar to OSH1 (OAS HIGH ACCUMULATION 1), catalytic [Arabidopsis thaliana] (TAIR:AT5G01580.1); similar to Os03g0295800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049827.1); similar to Gamma interferon inducible lysosomal thiol reductase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95437.1); contains InterPro domain Gamma interferon inducible lysosomal thiol reductase GILT; (InterPro:IPR004911) 0.103354939566705 1.28757585208928 0.232236578987391 1 1.56079454371616 21.5752834299059 0.103354939566705 0.06258173244351
AT1G09210_at 10.9772088406273 11.0790058917386 11.1366740356153 11.1894480050124 10.0586987084037 10.2147304862863 9.82362825715297 9.96837573338675 9.61300426842863 9.5042767111957 9.65306933630002 9.78345743419544 9.46089949367974 9.51614173956454 9.87391826390638 9.33915159903682 9.03644118274594 9.191844179898 9.32350541669632 0.0838345324502698 0.083882261479831 0.0863618943902488 0.0891347594176251 0.0857129767427621 0.0874767995940492 0.0838994208671907 0.0852631365079059 0.0896486312391571 0.0888307704543451 0.0841997802087398 0.0836680666447428 0.0853368326945216 0.0907342908425787 0.0856540987724615 0.0845976607053315 0.0973829080457437 0.0882871981636739 0.089240386910529 1 1|0 -|/ 2973333 2974942 2974181.5 2972844 2976752 - gene protein_coding_gene FALSE TRUE AT1G09210.1 calreticulin 2 (CRT2) Identical to Calreticulin-2 precursor (CRT2) [Arabidopsis Thaliana] (GB:Q38858;GB:O04152;GB:O80486); similar to CRT1 (CALRETICULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G56340.1); similar to calreticulin-1 [Glycine max] (GB:BAF36056.1); similar to calreticulin (GB:AAA80652.1); similar to Calreticulin-2 precursor (GB:Q38858); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580) 0.0947181998309927 1.28754156749075 0.232247968075253 1 1.56075631568855 20.0370350126643 0.0947181998309927 0.0418368298992239
AT2G17340_at 9.33436239389608 9.37147462613886 9.32621931083761 9.38148280375964 9.6064984583421 9.25673133129134 10.2553846772827 10.1362153309856 9.1383928070491 9.8099985074698 9.69026304179867 9.72148434262029 9.93778694189192 9.78055764489167 9.22460749427104 10.0333463810095 9.94094953987585 9.76715088441632 9.81981966098119 0.093475180614242 0.0982765871753965 0.0976950500172522 0.0987264653051748 0.0939834332816403 0.0944727027656338 0.0994067148822197 0.0929287386084965 0.106545940901436 0.0952670086331601 0.102448444544115 0.0933969411152435 0.0964998386136414 0.0988626359133642 0.101401165065302 0.0928386958413259 0.0956142362939185 0.100328916421674 0.0954354946256819 2 2|0 -|/ 7548719 7549833 7549240.143 7548488 7551208 - gene protein_coding_gene FALSE TRUE AT2G17340.1 pantothenate kinase-related Identical to Protein At2g17340 [Arabidopsis Thaliana] (GB:Q949P3;GB:Q7XJS9;GB:Q8LCJ8); similar to pantothenate kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35360.1); similar to pantothenate kinase-related [Arabidopsis thaliana] (TAIR:AT2G17320.1); similar to Os06g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057524.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52501.1); contains InterPro domain Protein of unknown function DUF89; (InterPro:IPR002791) -0.104505827835627 -1.28746982972451 0.232271800346230 1 1.56067632874192 19.2592570877402 -0.104505827835627 0.0649749971640391
AT1G15230_at 5.40085098239854 5.16192727977992 5.1241665857998 4.90116950277985 5.57791683438973 5.3822290778213 5.67368198158673 5.41158538030551 5.19142649668927 4.90555393260808 5.0758952458409 5.06226089941196 4.89512900775981 4.93020697731625 5.01991267280207 5.01527294714775 4.92392652431689 5.01617332360037 5.05761755835679 0.212738035881891 0.209485615110785 0.216448529228407 0.21427094025433 0.219770659778844 0.219283873933792 0.214857662072596 0.210227748044053 0.224882864789911 0.211629342836130 0.208250470253662 0.217913499858670 0.219108900588661 0.218488234552562 0.213836043279645 0.212307493355113 0.220812651477754 0.224223730251103 0.20797976485491 1 1 - 5242830 5243102 5242979.182 5242193 5243222 - gene protein_coding_gene FALSE TRUE AT1G15230.1 similar to Os09g0344700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062932.1) -0.112413184298442 -1.28713809956464 0.232382032414730 1 1.56030649012984 10.3511308842706 -0.112413184298442 0.0800180066583502
AT1G19120_at 8.50971378569489 8.74413397924106 8.48209621044069 8.68989310404798 9.33263739042482 8.63306902163537 8.81234832439677 9.0345919603555 8.18057776699537 8.47027701974786 8.98658111496757 8.77113185232806 8.45615456240524 8.99821356319489 8.3923431991524 8.86033834180915 8.09663139761567 8.63604661432255 8.42420313740036 0.188222280926755 0.179116275304022 0.197580517478902 0.174357507488874 0.176392062161196 0.188023094875472 0.184008027282969 0.174357507488874 0.19861497203513 0.187189865525461 0.179728881547093 0.179419296502722 0.189383898214180 0.186778899596594 0.186033549082592 0.179166386885939 0.21088583059544 0.191497315211834 0.184859932252507 1 0|1 /|+ 6608492 6609128 6608701.667 6608106 6609360 + gene protein_coding_gene FALSE TRUE AT1G19120.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT3G14080.2); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE78228.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.150277179279205 1.28568190610925 0.232866437977602 1 1.55868374125402 17.2838268330825 0.150277179279205 0.138110254618332
AT4G01400_at 7.48255772132341 7.9915265517715 6.56744259005865 7.14281344155696 7.7361493237197 7.3300489257936 7.2218426862809 7.46782592194688 7.50451917171688 7.72403450701983 8.13431315461764 8.27014872280982 7.3508123990963 7.7388116110741 7.96060456676056 7.86218580075962 6.95005883442836 7.42310350300804 7.8465559064299 0.206884738302327 0.205234444466614 0.212868583178579 0.20456846454764 0.198881156635319 0.226814111593325 0.201305419131625 0.201746138983512 0.228532162022394 0.202542366784989 0.202837600382512 0.202924388827184 0.206584194504643 0.208237638710533 0.204182475886887 0.200090367714211 0.21779269900074 0.216150006200404 0.202523735060250 4 4 - 573165 573669 573463.636 573098 577276 - gene protein_coding_gene FALSE TRUE AT4G01400.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G46100.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32707.1); contains InterPro domain COG4 transport; (InterPro:IPR013167); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.163636510517338 -1.28527483154021 0.233002003876143 1 1.55823031913462 15.0690049048689 -0.163636510517338 0.156279588734083
AT2G32070_at 8.30048326564937 8.68141084059997 8.39054911390353 8.34724775013004 9.10698362739715 8.75750964012449 8.62326401189758 8.58482534438471 7.97579222907347 7.65392669007502 8.34849394374829 8.20534085886558 8.23154950733676 7.9579963441915 7.6070754287031 8.03810544282015 7.99482751694338 7.78949451527439 8.03617146066657 0.197062070059219 0.198474342600057 0.202207282066068 0.207163940436574 0.20724708966634 0.207255369409452 0.211340361057575 0.205271929443859 0.225006856283051 0.209441415256448 0.203403225018874 0.197062070059219 0.205714433486884 0.214307582852641 0.201473090621715 0.20253844182463 0.204348029051823 0.214136202551596 0.202079258833242 2 2 - 13648021 13648454 13648253.364 13647745 13649030 - gene protein_coding_gene FALSE TRUE AT2G32070.1 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT1G80780.2); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.118028492693137 1.28493282094132 0.233115953148443 1 1.5578494406925 16.5541544849311 0.118028492693137 0.0900201059809038
AT2G42300_at 6.16253999887636 6.29208413350927 6.40231518139188 6.21455808228037 7.26130353729109 7.05869162242725 7.45674869279795 7.47203755804575 6.52051424150982 6.25206056844408 7.50433252343372 7.05197700995733 7.50580055196909 7.0126440102932 6.50571221927499 6.7515456533149 6.55849768205345 6.85155026165521 7.20405134736152 0.18725718062876 0.189030090574147 0.186272859575423 0.189712934317754 0.187854746789893 0.186966195794773 0.190753976541844 0.187318387867778 0.193503017970792 0.190020779386614 0.196083487256905 0.185995100585097 0.196691496020311 0.188656601856238 0.188262417116300 0.182975745867787 0.190210596448040 0.197557162030095 0.182975745867787 2 2 + 17628956 17630747 17629634.455 17628234 17631919 + gene protein_coding_gene FALSE TRUE AT2G42300.1|AT2G42300.2 basic helix-loop-helix (bHLH) family protein|DNA binding / transcription factor similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G57800.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE94659.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0986233066312487 1.28296448961979 0.233772662186733 1 1.5556586943423 13.6033512882104 0.0986233066312487 0.0528652253596658
AT2G25740_at 7.56220179244957 7.85014530496128 7.3784193883428 7.71057757692942 8.34738850254618 7.98960765820028 7.44836151103527 6.94712987962965 6.23379350810162 6.10580679431729 5.7989098114202 6.24587932593467 6.31663813069033 6.51054579507594 6.16653184552413 6.41683872954953 6.66559527046428 5.99819267754123 6.80027470047543 0.216486466525072 0.21607473269428 0.212522018640123 0.210377210994734 0.221578625246824 0.213124409188223 0.21335363961473 0.210386915398557 0.212467590995485 0.21848730466016 0.218876684882812 0.212688024383626 0.216267290975352 0.215353076819158 0.216608070419352 0.213128122532060 0.217601292117311 0.219930687534746 0.216714087979221 2 2|0 +|/ 10989611 10990674 10990188.9 10987200 10991009 + gene protein_coding_gene FALSE TRUE AT2G25740.1 ATP-dependent protease La (LON) domain-containing protein similar to Os05g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056076.1); similar to Os01g0743600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044220.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG06776.1); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111) 0.144735886731324 1.28214964621364 0.234044979037235 1 1.55475241341691 13.9766538430484 0.144735886731324 0.130937418553763
AT1G72390_at 5.88208237299225 6.25977660852072 5.8013612329418 6.20974636683006 5.99386134499103 6.21937513735993 5.23056646223863 5.25917799917739 4.91873753874812 5.45483867662949 4.96345249573666 5.0318593729773 5.4302862990131 4.85418559603113 4.85746914030906 5.21887644990628 4.88285816862673 4.73206919905963 5.05169283324645 0.222190774120522 0.222513277647209 0.227643259283762 0.228914260240485 0.235256140422909 0.238244724545307 0.220819310522307 0.224575668288007 0.222015488524588 0.227159655954017 0.220961054120679 0.221345434334495 0.223669751383162 0.225671166960843 0.220987220474866 0.223702088035843 0.222029591182280 0.224922696716498 0.226683002639595 1 1 + 27254337 27254776 27254618.818 27250615 27255238 + gene protein_coding_gene FALSE TRUE AT1G72390.1 similar to transcription initiation factor IID (TFIID) subunit A family protein [Arabidopsis thaliana] (TAIR:AT1G17440.2); similar to Conserved hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52107.1) 0.126405450232295 1.28157561801637 0.234236976497551 1 1.55411419496825 10.9260626605059 0.126405450232295 0.103992238578326
AT2G20920_at 10.5588986675102 10.5071754013493 10.7759431836841 10.7340346315662 11.1083266594673 10.8954073486050 10.7560130320368 10.6663072263452 11.1444375223073 11.0411577421333 11.0496454972493 10.7245995405637 11.0196071086806 10.9246021473429 10.7924702557404 11.2958846975876 10.9992300674241 10.9997706433628 10.9455570739377 0.0621069351063541 0.0596029178517034 0.0639859306567557 0.0623365884816196 0.0596029178517034 0.0639808763937553 0.0621590550909727 0.0596029178517034 0.0662208766547726 0.0596029178517034 0.0605572433872513 0.0605632709260917 0.0596029178517034 0.0612669906634076 0.0602856849230189 0.0596029178517034 0.0602234731043581 0.0607335038330891 0.0607945215624947 2 2 + 9006094 9006840 9006562.182 9005767 9007013 + gene protein_coding_gene FALSE TRUE AT2G20920.1 similar to CDF1 (CELL GROWTH DEFECT FACTOR 1), heat shock protein binding [Arabidopsis thaliana] (TAIR:AT5G23040.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93866.1) 0.0941690863190694 1.28114475966001 0.234381174266276 1 1.55363527806036 21.7599851142555 0.0941690863190694 0.0416099809125366
AT4G09890_at 5.87215130910895 6.19203894960279 6.880033930218 7.13342908285903 8.03554471494805 7.48245253847077 7.9847097957665 8.27394595174524 7.45492710101083 8.19930249736035 8.18232545866626 8.1341391614816 7.76945455638954 8.63544008855422 7.59018071458047 8.9642368576751 8.0939941765474 7.30620085870719 8.6460182859291 0.235700897361988 0.226579595468139 0.230451449413087 0.235090217251284 0.228530643018113 0.228014880422009 0.241512630843653 0.236229431512552 0.239555924076859 0.231786356141459 0.227120796446830 0.225517973118283 0.233728102955303 0.233778718630237 0.230963889805711 0.224635755220826 0.247721980821177 0.232236165870541 0.228566685931910 4 4 + 6218504 6218737 6218623.636 6218393 6218924 + gene protein_coding_gene FALSE TRUE AT4G09890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11970.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81195.1) 0.143283710521610 1.28107901911607 0.234403182573737 1 1.55356221391370 15.3240778401776 0.143283710521610 0.129051182197228
AT1G30910_at 7.89320978761522 7.72230598190935 7.55804693744193 7.43353202787811 8.1951361515118 7.76792928372149 8.51360903208729 8.11461074726111 7.59104385388818 8.00003170666385 7.9404322319524 7.68284468030996 7.60957611356291 7.91451621481587 7.86586943204552 8.03160580364993 7.9239819781834 7.8441133193412 7.76839803758401 0.165163222188047 0.154326382368429 0.153099663223137 0.151047496530878 0.153701610813087 0.148142316358348 0.153977744232983 0.155098207022339 0.158031933371118 0.154304053606538 0.151412439099436 0.151388505578456 0.152223458276074 0.158349573238531 0.154702582076855 0.151978234523549 0.165522205240496 0.155769384288726 0.161935416139998 1 1|0 +|/ 11001774 11002752 11002264.571 11000864 11002917 + gene protein_coding_gene FALSE TRUE AT1G30910.1 molybdenum cofactor sulfurase family protein similar to molybdenum cofactor sulfurase family protein [Arabidopsis thaliana] (TAIR:AT5G44720.1); similar to molybdenum cofactor sulfurase-like protein 1 [Oryza sativa (japonica cultivar-group)] (GB:ABH88162.1); similar to Os09g0560700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063929.1); contains InterPro domain MOSC, N-terminal beta barrel; (InterPro:IPR005303); contains InterPro domain MOSC; (InterPro:IPR005302) -0.128573257362971 -1.28002182970761 0.234757341803829 1 1.55238758627648 15.7188518292339 -0.128573257362971 0.107575073663861
AT4G04880_at 6.52406352347577 6.20945009086632 6.55846621476849 6.08922155752093 6.85883418715863 6.49155325292212 6.63564870536066 5.96102880489957 5.46935675202892 5.4999899352322 5.43386204782049 5.99350415564724 5.83058108546522 6.20195027398541 5.22526021896218 6.16857052948084 5.55301997338883 5.27082963958028 5.64340571895266 0.266536408041842 0.259613811733656 0.264246653145057 0.266783145276202 0.265225331929133 0.268451175177294 0.270213817127001 0.258938874162683 0.260566479252029 0.258477730590926 0.258477730590926 0.265691445020609 0.258477730590926 0.264093032819186 0.258477730590926 0.258477730590926 0.282706903702975 0.266812153301487 0.258477730590926 4 4|0 -|/ 2465122 2466008 2465633.429 2464857 2467164 - gene protein_coding_gene FALSE TRUE AT4G04880.1 adenosine/AMP deaminase family protein similar to Adenosine/AMP deaminase [Medicago truncatula] (GB:ABE77791.1); contains InterPro domain Adenosine/AMP deaminase; (InterPro:IPR001365) 0.169542063539337 1.27996725229858 0.234775637463012 1 1.55232696321552 12.0396739800945 0.169542063539337 0.165009183247311
AT3G01910_at 10.2186613266603 10.1682508407291 10.2726330120459 10.2103481299879 9.9383934214999 9.95895565051355 10.1808551434157 10.3607091629721 10.2661555827627 10.3508068890421 10.1354323289059 10.1614056560000 10.1458542808710 10.2175027567888 10.1847287753139 10.296237730141 10.1781163992851 10.3283043623386 10.1401642515732 0.070966995302898 0.06971176660936 0.070910160522436 0.0719099485825142 0.06971176660936 0.0719621266460554 0.06971176660936 0.06971176660936 0.0750017840896221 0.0719011918318521 0.0719718239784883 0.0706468564958828 0.0734286519885775 0.0711586312613333 0.0789764629951406 0.0713971327663593 0.0725447271046956 0.0703265461376267 0.0715181863449049 3 3|0 -|/ 314965 316013 315543.1 314701 317438 - gene protein_coding_gene FALSE TRUE AT3G01910.1|AT3G01910.2|AT3G01910.3 SOX (SULFITE OXIDASE); sulfite oxidase|SOX (SULFITE OXIDASE) Encodes a homodimeric Mo-enzyme with molybdopterin as organic component of the molybdenum cofactor. It lacks the heme domain that other eukaryotic Mo-enzymes possess and has no redox-active centers other than the molybdenum. SO protein has been found in all parts of the plant. The plant SO combines its enzymatic sulfite oxidation with a subsequent nonenzymatic step using its reaction product H2O2 as intermediate for oxidizing another molecule of sulfite. Identical to Sulfite oxidase (EC 1.8.3.1) (Moco-containing protein AtMCP) (At-SO) (AtSOX) (SOX) [Arabidopsis Thaliana] (GB:Q9S850;GB:Q9SNW2); similar to NIA1 (NITRATE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT1G77760.1); similar to sulfite oxidase-like [Solanum tuberosum] (GB:ABB86275.1); similar to sulfite oxidase [Codonopsis lanceolata] (GB:BAE48793.1); similar to Sulfite oxidase, putative [Brassica oleracea] (GB:ABD65019.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066)|Identical to Sulfite oxidase (EC 1.8.3.1) (Moco-containing protein AtMCP) (At-SO) (AtSOX) (SOX) [Arabidopsis Thaliana] (GB:Q9S850;GB:Q9SNW2); similar to NIA1 (NITRATE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT1G77760.1); similar to Sulfite oxidase, putative [Brassica oleracea] (GB:ABD65019.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066) -0.091732176593129 -1.27984567735618 0.234816396608059 1 1.55219192720338 20.3927625163105 -0.091732176593129 0.0342590969606241
AT2G27450_at 8.92732649875647 9.21928035588227 9.21899711905469 9.19720709128079 9.34509775474695 8.66845509347348 9.93991632839903 9.51943720657826 8.95541283026444 9.19171097885121 8.93146753583209 9.10635599573175 8.98073520505879 8.97075495129989 9.04071599250448 9.26291644707389 8.94246695733524 8.80599834131276 8.92174645559556 0.145853431578517 0.139290241065514 0.146827118545546 0.140310989036013 0.139290241065514 0.145880191738082 0.142453001080781 0.144122817909477 0.157339707765602 0.139290241065514 0.154407063972150 0.139290241065514 0.145569262938969 0.149678843397394 0.139290241065514 0.141727138649343 0.153738125868709 0.144628440181314 0.148039599050811 2 2|0 -|/ 11744774 11745843 11745230.2 11744510 11746768 - gene protein_coding_gene FALSE TRUE AT2G27450.1|AT2G27450.2 NLP1 (NITRILASE-LIKE PROTEIN 1); hydrolase, acting on carbon-nitrogen (but not peptide) bonds Encodes N-carbamoylputrescine amidohydrolase that is involved in putrescine and polyamine biosynthesis. Identical to N-carbamoylputrescine amidase (EC 3.5.1.53) (Nitrilase-like protein 1) (CPA) [Arabidopsis Thaliana] (GB:Q8VYF5;GB:Q9ZQH4); similar to BETA-UP (BETA-UREIDOPROPIONASE), beta-ureidopropionase [Arabidopsis thaliana] (TAIR:AT5G64370.1); similar to N-carbamoylputrescine amidase (GB:Q3HVN1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010) -0.155915579700076 -1.27936503511551 0.234977594608921 1 1.55165814870935 18.2685312726077 -0.155915579700076 0.146878441394518
AT1G48230_at 6.56881919037845 6.66655497515345 6.18809848619041 6.40381677174594 7.22686989460361 6.7571715839634 6.6455699914061 6.81664118654223 6.41002330478318 6.14987440340815 6.70597980226053 6.754416033317 6.77834791775081 6.53126550070978 6.46445295570393 6.30956604304951 6.06080465907122 6.341511511013 6.10288331035196 0.203813940939749 0.184622238090373 0.191773943305993 0.194935880382243 0.193113840166351 0.197137726411913 0.200326571841465 0.192460696091316 0.195872453472949 0.193075414001987 0.190472235758107 0.189485486874796 0.187346206011783 0.193911014069454 0.185229090851497 0.187519656615644 0.203661030910672 0.190192292350769 0.188382340193825 1 1|0 +|/ 17811209 17812233 17811751.556 17809932 17812553 + gene protein_coding_gene FALSE TRUE AT1G48230.1 phosphate translocator-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT3G17430.1); similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07264.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.120979447467080 1.27936074667371 0.23497903328629 1 1.55165338675558 13.0163027895182 0.120979447467080 0.0957241856313858
AT2G31400_at 11.1867164767699 11.2429775491360 11.3146028678441 11.3652912967664 11.3867283985556 11.1694184263999 11.0582897683379 10.8694508050814 10.8264734812267 10.9124299174603 10.7307083728372 11.1071948060446 10.9173594508753 10.7365140903471 10.7074553522949 11.1080946374412 11.0330310836670 10.7442461507186 10.9900796485612 0.070486998872103 0.070486998872103 0.070486998872103 0.070486998872103 0.0709696184601977 0.0730478409372086 0.0710785535717878 0.0742575953096291 0.080313766375594 0.0731046883043572 0.0721211779051702 0.0717245195730161 0.070486998872103 0.0726882804870096 0.07276442742235 0.0707655806167203 0.0781544219429105 0.0772541046063344 0.0729834691501516 2 2 - 13394291 13395212 13394625.545 13394081 13397783 - gene protein_coding_gene FALSE TRUE AT2G31400.1 pentatricopeptide (PPR) repeat-containing protein similar to PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2), binding [Arabidopsis thaliana] (TAIR:AT1G74850.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98950.2); similar to Os12g0562300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067027.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0977830374195117 1.27931248988806 0.234995222880128 1 1.55159980237087 22.0968027030002 0.0977830374195117 0.0515163716904097
AT2G47400_at 12.8093407211521 12.7793956372359 12.7906646065217 12.7733817816174 12.9749205236906 12.8107158722514 12.8358143293628 13.0576138112575 13.0628429501015 13.0680624273965 13.3820232357215 13.3683519622181 13.3503324931257 13.2665867652883 13.2233672716706 13.2650041019566 13.1611373966617 13.2149556293171 13.0281131636489 0.0749684648714286 0.0774325352572149 0.0768405842966756 0.077976996906778 0.0770126501388077 0.078330219757708 0.0786471367460257 0.0758550731384769 0.0767365201287764 0.0747302165183044 0.074543314711954 0.0745275754563429 0.0743526827101168 0.0795549295094765 0.07593779498125 0.0743526827101168 0.0772398104089205 0.0744614349232699 0.0751932008541421 2 2 + 19453960 19454303 19454074.818 19453924 19454508 + gene protein_coding_gene FALSE TRUE AT2G47400.1 CP12-1 (CP12 domain-containing protein 1) CP12-1 encodes a small peptide found in the chloroplast stroma. It belongs to the CP12 gene family thought to be involved in the formation of a supramolecular complex with glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and phosphoribulokinase (PRK) embedded in the Calvin cycle. The annotation of this gene is based on article 32494. similar to CP12-2 [Arabidopsis thaliana] (TAIR:AT3G62410.1); similar to CP12 [Nicotiana tabacum] (GB:CAA96569.1); contains InterPro domain Protein of unknown function CP12; (InterPro:IPR003823) 0.096421623940457 1.27921283091799 0.235028660275592 1 1.55148914510541 26.0199689290748 0.096421623940457 0.0481308489633104
AT2G17110_at 5.33844820126543 5.45432075959522 5.71749407196307 5.46384501874771 6.16794368411538 5.19607041972287 5.26532420715674 4.67826692125368 4.5953886802078 4.51952588189926 4.35760801555763 4.3591873719668 4.67084011518176 4.40530024295097 4.24917655888716 5.12269191971822 4.69658258974465 4.34926137239682 4.63047767658441 0.212994079002519 0.21291491575383 0.218291007253274 0.220518387730896 0.216475511715021 0.216623294581479 0.219669138016812 0.211792593325329 0.217401723026775 0.211792593325329 0.218105854741236 0.212052068972640 0.211792593325329 0.217474477560292 0.214248979506256 0.214858779323030 0.224678011605967 0.216400125965881 0.211792593325329 2 2 - 7450462 7450981 7450759.273 7450062 7453147 - gene protein_coding_gene FALSE TRUE AT2G17110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35240.1); similar to Os09g0547300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063849.1); similar to bzip-related transcription factor -like [Oryza sativa (japonica cultivar-group)] (GB:BAD46467.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.198390943361417 1.27864380237593 0.235219656182068 1 1.55085742631806 9.96427837857634 0.198390943361417 0.202328819081384
AT4G38900_at 5.49242476427073 6.24635268823505 5.16875662779343 5.10860886673952 5.64687147388806 5.89089468472629 5.5214695198934 6.46905469116785 5.70057409175649 5.68863803841092 5.72368423397591 5.80407749909173 5.95140468948463 5.7993809060933 5.94606912399996 5.68429530049835 5.3585379682763 5.90048474259092 5.73346655874378 0.214403398126716 0.204942454665892 0.208475194017024 0.203431032404486 0.207373804160931 0.210217082121518 0.201844632718184 0.207722532064509 0.237899876933993 0.204811868100901 0.204431737641376 0.204759783832918 0.204841893881398 0.212962934539993 0.205864689052459 0.199091930608427 0.214160842451077 0.201627577288383 0.201684532550543 4 4|0 -|/ 18139600 18140417 18140072.444 18139316 18141977 - gene protein_coding_gene FALSE TRUE AT4G38900.1|AT4G38900.2|AT4G38900.3 bZIP protein|DNA binding similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT2G21230.1); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to bZIP family transcription factor [Arabidopsis thaliana] (TAIR:AT2G21230.1); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) -0.207555128786969 -1.27760377456155 0.235569080751748 1 1.54970329037041 11.4323298500752 -0.207555128786969 0.214021121896870
AT3G59000_at 5.32891781044809 5.53576881615357 5.04522446538228 5.21153702706396 5.62300072229214 5.56660380944278 5.15259905154673 5.43500803908182 4.8041589565471 5.18254789658631 4.7903211959724 4.52774301989525 4.77337037312442 4.89371444429855 4.34638772354626 4.85329452983337 4.93336359663557 4.78390742297848 4.85172043233723 0.200693697549985 0.189716538633680 0.195979636731799 0.195527009603448 0.189417274764454 0.201791011336312 0.201473101736708 0.202344375943229 0.196031625699182 0.189140979681465 0.190860576173353 0.189686002077722 0.192448865718045 0.195532648569739 0.194944412494177 0.191118002433849 0.195044348867500 0.188624475632507 0.194920343522019 3 3|0 +|/ 21811578 21812489 21812153.222 21810253 21812720 + gene protein_coding_gene FALSE TRUE AT3G59000.1|AT3G59000.2 F-box family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52650.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85825.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101)|similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G58930.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE93480.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) -0.104930781733468 -1.27568051958522 0.236216395616348 1 1.54757063343867 10.2042850760643 -0.104930781733468 0.0677752975846329
AT4G35360_at 8.41266322062692 8.35992898302061 8.34292491191721 8.40850837181079 8.97454068924902 8.50711968283224 8.58578070981356 8.73606582647542 7.91038077915746 7.62168328944745 8.0564202621997 7.68602639121441 7.71876914922564 8.49514832556711 8.02504683912715 7.9314469144249 7.39706717923843 7.73772637849513 7.52534562375933 0.16226637645285 0.162024153056289 0.165841782259064 0.163985563880597 0.161425974619155 0.16998545173656 0.166207404124536 0.162076758008203 0.173469640253995 0.174210779919035 0.164971248763119 0.169081103110775 0.163547675847769 0.162841925607635 0.169888522296529 0.161620788816999 0.185162191848102 0.165799480669290 0.166004785518126 4 4|0 -|/ 16812657 16813452 16813121.75 16812121 16814750 - gene protein_coding_gene FALSE TRUE AT4G35360.1 pantothenate kinase family protein similar to pantothenate kinase-related [Arabidopsis thaliana] (TAIR:AT2G17340.1); similar to Os06g0325500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057524.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52501.1); contains InterPro domain Protein of unknown function DUF89; (InterPro:IPR002791) 0.114908464058332 1.27538887841426 0.236314684132901 1 1.54724742144350 16.3243213798305 0.114908464058332 0.0862066042838831
AT1G13560_at 9.31097388461205 9.53533606552947 9.37895932508945 9.3518702710245 9.5549037929535 9.59397331675813 9.6524226653686 9.62996892741034 8.96887956470667 9.14100873811686 9.43147856490655 9.30742559190999 9.48336404352856 9.30380559526842 9.27020026121409 9.33580402288051 9.3459901446753 9.25235185674 9.16857019742136 0.114051433492083 0.109610508022142 0.106906324139079 0.107095758973312 0.112139147942805 0.106368300741963 0.109596359989071 0.112561308607072 0.116704505233518 0.110785128550136 0.104740768051257 0.108789506263192 0.110326342939501 0.119885801705031 0.109595890809018 0.107967673281443 0.109125610163977 0.108970305418988 0.108880226302825 1 1|0 -|/ 4638943 4640254 4639518.625 4638511 4642101 - gene protein_coding_gene FALSE TRUE AT1G13560.1|AT1G13560.2 AAPT1 (AMINOALCOHOLPHOSPHOTRANSFERASE 1); phosphatidyltransferase Encodes aminoalcoholphosphotransferase AAPT1. similar to AAPT2 (AMINOALCOHOLPHOSPHOTRANSFERASE), phosphatidyltransferase [Arabidopsis thaliana] (TAIR:AT3G25585.4); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAB53764.1); similar to aminoalcoholphosphotransferase [Brassica rapa subsp. pekinensis] (GB:AAL46934.3); similar to aminoalcoholphosphotransferase [Brassica rapa] (GB:AAD56040.1); contains InterPro domain CDP-alcohol phosphatidyltransferase; (InterPro:IPR000462) 0.0931171503925408 1.27478412452028 0.236518606729818 1 1.546577355071 18.7181120362043 0.0931171503925408 0.0398787953986517
AT4G02880_at 7.07949279550342 7.07022313792506 6.84404565228833 6.66976354852948 7.07063828333495 7.26866207232685 6.5238012941223 6.75793549506548 6.12871710296763 6.54334122886852 6.06707536528022 6.10808996019296 6.17377575782497 5.96196614523078 5.69636920315344 5.93496206698747 6.60987339024379 5.69311179333199 6.345751183716 0.234272514914196 0.226196869714555 0.228510119269933 0.234049111327164 0.230925265940643 0.23427375274914 0.228523226005261 0.243687370243025 0.231472121831384 0.230062165574323 0.231539072520659 0.229256953271979 0.225599921426492 0.238787496149170 0.237808434012205 0.226863276817894 0.237413945031173 0.241353751939363 0.234733629850676 4 4|0 +|/ 1276881 1277876 1277609.3 1274512 1278165 + gene protein_coding_gene FALSE TRUE AT4G02880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G03290.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE77463.1); contains InterPro domain UBA-like; (InterPro:IPR009060) -0.101601334885421 -1.27462500836426 0.236572285088878 1 1.54640108904945 13.0955316842860 -0.101601334885421 0.0610597143673873
AT1G21780_at 7.80902099362535 7.5210436263748 8.37632781495478 7.98510010039622 8.84933281002446 7.79895094275563 8.42739515245676 7.79311418257335 7.2486745489346 7.21109895843172 6.86760117288023 6.90532291556244 7.8101585823035 7.05755344331233 6.92780987934539 7.76366724355057 7.81763993708239 7.46099536337628 7.30245885052142 0.200174403401970 0.20149919812779 0.201236699198454 0.198151417023461 0.209566992718977 0.207123134428375 0.210216780002191 0.204447391074458 0.203704887890925 0.194671523180527 0.197065316368775 0.198082824457275 0.195728431396469 0.201692026219269 0.198557995279148 0.19271856727377 0.21263453115194 0.201497229106993 0.198037259933447 1 1 + 7653264 7653770 7653436.545 7651871 7654003 + gene protein_coding_gene FALSE TRUE AT1G21780.1|AT1G21780.2 BTB/POZ domain-containing protein BTB/POZ domain-containing protein. Contains similarity to gb:AJ000644 SPOP (speckle-type POZ protein) from Homo sapiens and contains a PF:00651 BTB/POZ domain. ESTs gb:T75841, gb:R89974, gb:R30221, gb:N96386, gb:T76457, gb:AI100013 and gb:T76456 come from this gene;supported by full-length. Interacts with CUL3A and CUL3B. similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G55760.1); similar to BTB/POZ; TRAF-like [Medicago truncatula] (GB:ABE79798.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.218525271411301 1.27408932336447 0.236753075235353 1 1.54580777230364 15.3602462127981 0.218525271411301 0.228380004746422
AT1G55150_at 7.12663530812104 7.3785555999396 7.29368217872683 7.07800019170557 7.27200429765239 7.52779436523955 7.57462592164396 7.01024753654548 6.44154498660429 6.42480155225797 5.78294840091443 6.16563424329658 6.14782935378626 5.61732152761153 6.35999329533348 6.23186184048778 6.83973414734742 6.13303007506373 6.49824481958133 0.19897042489994 0.199585568920645 0.197548160216384 0.203165862250663 0.197444143554056 0.195706705679257 0.203607760126883 0.19972091043506 0.200341963983324 0.194154919559134 0.200030332912811 0.197965297960512 0.205865665500458 0.197624764924638 0.198057881621423 0.196482055559920 0.201986413849533 0.194559417905082 0.202980255352453 1 1 + 20579935 20580606 20580300.091 20578147 20580987 + gene protein_coding_gene FALSE TRUE AT1G55150.1 DEAD box RNA helicase, putative (RH20) Identical to DEAD-box ATP-dependent RNA helicase 20 (EC 3.6.1.-) (RH20) [Arabidopsis Thaliana] (GB:Q9C718;GB:Q9ZS02); similar to ethylene-responsive DEAD box RNA helicase, putative (RH30) [Arabidopsis thaliana] (TAIR:AT5G63120.2); similar to Os01g0197200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042298.1); similar to ethylene-responsive RNA helicase [Lycopersicon esculentum] (GB:AAD46404.1); similar to putative DEAD box RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD82427.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.137357754449572 -1.27408048860544 0.236756057878294 1 1.54579798841950 13.5900221232608 -0.137357754449572 0.121623585142688
AT4G29960_at 7.7526809578009 8.33763155068371 7.5103370282656 7.81742276695577 8.5806403985279 7.53764566649616 7.60212810434056 7.41056050114396 7.2504065553785 6.58852789865455 6.34767966533255 6.74071157084814 6.29199419654001 6.32967230581209 6.59796860225421 6.43533359836322 5.8983188838672 6.68352611388986 6.91750790500751 0.205126639645006 0.208489292497822 0.212609081038431 0.208446867554798 0.206495792452301 0.229661022463445 0.198323036877156 0.210848732972483 0.198609849131029 0.195803426619875 0.198474222113025 0.195803426619875 0.198611285755302 0.202530304504371 0.202386748715310 0.198777035884916 0.217219089637228 0.200912622150254 0.198469115275171 4 4 - 14660767 14661886 14661235.273 14660573 14662409 - gene protein_coding_gene FALSE TRUE AT4G29960.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84586.1) -0.208701157998851 -1.27385671678725 0.236831614459520 1 1.54555019137760 14.4858632401736 -0.208701157998851 0.216214818631485
AT4G00810_at 10.1632538498463 10.2654520424100 9.8903807391049 9.88434179449174 9.9864502056255 9.56972465460123 10.2194246612520 10.4071685380117 9.4032933816724 10.1973184874276 10.3913902954070 10.6104269631640 9.9841389653321 9.92496082894884 10.7768301261760 10.0689389130363 9.29539440218542 9.57651934254472 10.0127713211752 0.111939218950890 0.111939218950890 0.112579266353344 0.113621218183458 0.114136825421929 0.124460921692506 0.118824145557618 0.111939218950890 0.122081483763973 0.116189671328031 0.114366805682758 0.112521282785440 0.117678128818437 0.117977569216211 0.117322952858974 0.111939218950890 0.139952280341458 0.128845692656784 0.115107805266059 4 4|0 -|/ 346179 346928 346491.333 345952 347199 - gene protein_coding_gene FALSE TRUE AT4G00810.1|AT4G00810.2 60S acidic ribosomal protein P1 (RPP1B) Identical to 60S acidic ribosomal protein P1-2 (RPP1B) [Arabidopsis Thaliana] (GB:O23095;GB:Q9ASX0); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.111826587458304 -1.27378380500238 0.236856237495898 1 1.54546945756527 20.0231259155135 -0.111826587458304 0.0810570177222019
AT3G54230_at 6.42273133335314 6.52181670734112 6.9571569815835 6.56753957521799 7.29995829044383 6.97672274589264 6.65020430308708 5.93791795511846 6.04323058632246 6.89624445550852 6.01346532078831 6.35822572860774 6.39960007094151 6.2322958571515 6.32170958842532 6.61020867253246 6.48690950681654 6.42229932870193 6.87450515080309 0.197704449464833 0.193493356985159 0.191631302607659 0.198052652496755 0.191676592834154 0.200368249232749 0.191049538529088 0.198122749306736 0.209708985200059 0.198372255434539 0.200773357269525 0.195035837031422 0.191049538529088 0.194928498539724 0.209930419014020 0.191049538529088 0.197226975973552 0.206206036610317 0.201116914826652 3 3 + 20090375 20091049 20090648.636 20084082 20091242 + gene protein_coding_gene FALSE TRUE AT3G54230.1 nucleic acid binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G16940.1); similar to putative RNA-binding protein 10 [Oryza sativa (japonica cultivar-group)] (GB:BAD26240.1); similar to Os02g0167500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046007.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain D111/G-patch; (InterPro:IPR000467); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.159053009296922 1.27305993217251 0.237100812935007 1 1.54466809075938 13.1468806482332 0.159053009296922 0.152194930299608
AT3G11630_at 11.5423967482164 11.6802700149555 10.9822989435169 11.0830822874796 11.2256055847613 11.2882084433169 12.0377715736689 12.2111389251980 12.2661955578830 12.2145307294634 12.7416917206064 13.0241837498816 12.4528340181452 12.7424948866848 13.0732890706991 12.6836834508900 12.1159984466046 12.6376838066014 11.9671886079379 0.0708313320404229 0.0693055343986088 0.071976706129063 0.0706059652318816 0.0761219672403577 0.0712126031385222 0.0712884845576099 0.0688709785658475 0.072982838962431 0.070188084872061 0.0709681972182009 0.0688709785658475 0.0688709785658475 0.07172877075021 0.0754792058761735 0.0688709785658475 0.0774819023392129 0.070409964943771 0.0688709785658475 3 0|3 /|+ 3673020 3673901 3673454.25 3672126 3674081 + gene protein_coding_gene FALSE TRUE AT3G11630.1 2-cys peroxiredoxin, chloroplast (BAS1) Identical to 2-cys peroxiredoxin BAS1, chloroplast precursor (EC 1.11.1.15) (BAS1) [Arabidopsis Thaliana] (GB:Q96291;GB:P92938;GB:Q9S7Y0); similar to 2-cys peroxiredoxin, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT5G06290.1); similar to 2-cys peroxiredoxin BAS1, chloroplast precursor (Thiol-specific antioxidant protein) (GB:O24364); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; (InterPro:IPR000866) -0.0942090360358443 -1.27276849345631 0.237199341261848 1 1.54434553613038 23.9229902445687 -0.0942090360358443 0.0434851890685343
AT1G75220_at 7.98745098114642 8.48573397840297 8.39698219267943 8.44415919435414 8.83679056498064 8.56788049922876 8.79494174908742 8.73441039538318 8.82156892487219 8.54469200240707 8.83069388014737 8.43069279565175 8.77717598038393 8.86205290067762 8.5123705764506 8.5711320543445 8.49438960304692 8.9491889692461 8.11817922773551 0.138589850592834 0.138765362524238 0.137071949970913 0.136802749463520 0.133612954080812 0.139770343120186 0.133730084818949 0.144256391599966 0.134866509271028 0.143142110480101 0.129055613034889 0.130571739806992 0.134455823481838 0.133852024602265 0.134355200903132 0.129055613034889 0.142437864928001 0.139708760340856 0.140720227506794 1 1|0 -|/ 28233122 28234165 28233719.25 28232818 28236492 - gene protein_coding_gene FALSE TRUE AT1G75220.1 integral membrane protein, putative Identical to Sugar transporter ERD6-like 6 [Arabidopsis Thaliana] (GB:Q9FRL3); similar to integral membrane protein, putative / sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT1G19450.1); similar to 10A19I.3 [Oryza sativa (japonica cultivar-group)] (GB:AAD39600.1); similar to Os05g0579000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056416.1); similar to integral membrane protein [Beta vulgaris] (GB:AAB53155.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.122233773397211 1.27197811922627 0.237466720150008 1 1.54347101912597 17.1176814344071 0.122233773397211 0.098881969511639
AT1G26370_at 5.27595936363905 5.45910067336422 5.14767542772774 5.40401194334447 5.62503699623207 5.55720432714047 5.74538315436913 5.49052834964968 4.3183099613131 3.92417476354318 4.58444992004399 5.00737037073229 4.51894017726365 4.13371837053125 4.31242475602727 4.81898552800084 4.39881098624604 4.49689519836696 4.5443675003827 0.230392395964901 0.229442514794917 0.236550338407461 0.227184471063756 0.234503816792383 0.233697925486801 0.226318712926035 0.2295747832877 0.249033472797356 0.229722010579353 0.236012108156708 0.230301207223432 0.226318712926035 0.229182954962911 0.232350225987289 0.226318712926035 0.242333758234502 0.232976042207679 0.231644881994436 1 1 - 9122020 9122867 9122373.727 9121479 9125544 - gene protein_coding_gene FALSE TRUE AT1G26370.1 RNA helicase, putative similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to putative RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD35264.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.106202313338772 1.27065455881754 0.237915037917464 1 1.54200734830330 9.86122927367395 0.106202313338772 0.0711002812400525
AT4G11240_at 6.6291463384867 6.7202405076177 6.45206161654417 6.26635308361458 7.0968926032878 6.97870253394186 5.6976467307698 5.95585773147475 5.6501852912904 5.70287250801384 5.72635480091595 5.48607163232322 5.67178611822169 5.3570997816117 5.89172148313142 5.83892551571844 5.8501622574914 5.34191298359201 6.3201811820703 0.24286621470716 0.216938513222375 0.226938872511188 0.225681071391378 0.222227700114887 0.230658277816981 0.232222826354752 0.218624597761884 0.237698474946518 0.224831026857884 0.234147514414915 0.218268006134594 0.219133478380914 0.220565014345187 0.232965742263006 0.218909085974611 0.228150867044616 0.216938513222375 0.222455344802357 4 4|0 +|/ 6848240 6848839 6848418.556 6847108 6849296 + gene protein_coding_gene FALSE TRUE AT4G11240.1 TOPP7 (Type one serine/threonine protein phosphatase 7); protein phosphatase type 1 encodes a type I serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. Identical to Serine/threonine-protein phosphatase PP1 isozyme 6 (EC 3.1.3.16) (TOPP6) [Arabidopsis Thaliana] (GB:P48486;GB:Q9SUT7); similar to TOPP3 (Type one serine/threonine protein phosphatase 3), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT1G64040.1); similar to Serine/threonine-protein phosphatase PP1 (GB:P48488); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.101102146713713 1.26988101206173 0.238177382376563 1 1.54115237627239 12.2429046342591 0.101102146713713 0.0607980269827949
AT1G35620_at 8.65937945033021 8.67711168695221 8.19293554045028 8.2691941523737 8.94345726972163 8.39219945920128 8.49774853815569 8.51534064479642 8.82871467399127 8.64600756251166 8.78413048515593 8.76879180051625 8.88549995806195 8.76581331490426 8.51302131263557 8.75969995239082 8.54184143896485 8.47765402607056 8.89559795640093 0.117911024009756 0.117289345085542 0.114539649168516 0.123112725990151 0.126428368421941 0.118708344342695 0.122160269458823 0.115946288307383 0.125605456931500 0.116965063515559 0.120361999739531 0.114539649168516 0.119516379120508 0.125328693619627 0.116297639414845 0.120232747927986 0.123239011103170 0.118048570530709 0.115691348121483 1 1 + 13157596 13158184 13157983.545 13156346 13158445 + gene protein_coding_gene FALSE TRUE AT1G35620.1 ATPDIL5-2 (PDI-LIKE 5-2); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-1 (PDI-LIKE 1-1), protein disulfide isomerase [Arabidopsis thaliana] (TAIR:AT1G21750.2); similar to protein disulfide isomerase [Zea mays] (GB:AAX09969.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Disulphide isomerase; (InterPro:IPR005788) -0.120499334751170 -1.26987990579553 0.238177757734432 1 1.54115115380203 17.2570024762754 -0.120499334751170 0.0964031700050197
AT4G20840_at 4.81514875971596 5.46519657333419 4.5195873812165 5.11626922210393 5.63877564672217 5.2185314983776 6.33468843708756 6.52353329280185 5.66224756690974 6.11109844828882 6.77654576825300 6.84846983716534 6.59359444062586 6.34945925898032 6.42720542972091 6.44061795028811 5.21237427942537 5.90617004356322 6.24265277504936 0.198345801013576 0.202691596508868 0.210986502791854 0.197434566438629 0.195341960801231 0.205820041041146 0.202338362611517 0.200275490014986 0.219966097129272 0.201245221113279 0.199007397345286 0.197743574873661 0.209395050654147 0.204795670098159 0.195341960801231 0.195341960801231 0.205848638310163 0.205377573051106 0.195341960801231 4 4 + 11158986 11159514 11159235.182 11157927 11159546 + gene protein_coding_gene FALSE TRUE AT4G20840.1 FAD-binding domain-containing protein similar to ATSEC1A, electron carrier [Arabidopsis thaliana] (TAIR:AT1G01980.1); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G20830.2); similar to FAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G30740.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90038.1); similar to Berberine and berberine like, putative [Medicago truncatula] (GB:ABE90036.1); contains InterPro domain FAD linked oxidase, N-terminal; (InterPro:IPR006094); contains InterPro domain Berberine/berberine-like; (InterPro:IPR012951) -0.173689566354858 -1.26980163634442 0.238204315939320 1 1.54106466455776 11.6162851294627 -0.173689566354858 0.172261893217674
AT4G20380_at 8.5425058453961 8.4648102011866 8.59338178411507 8.44175478893421 9.08760266706548 8.7866665854462 8.5117365756002 8.373174143649 8.65227707949568 8.11262047684255 8.2871286172623 8.28112951814923 8.24089385121964 8.400530994108 8.18869546249106 8.5168958367746 8.44190328632303 8.27670238244608 8.36881443825517 0.117063613615547 0.119576101151721 0.116646893211936 0.115537349178560 0.121181399253338 0.123018293228094 0.117464860520714 0.114931003291482 0.127264532561745 0.123818267835226 0.122450492721293 0.116948108122286 0.115941108840635 0.118057562166536 0.118969198222432 0.114931003291482 0.120001184671791 0.122791521635287 0.118912915682599 4 4|0 +|/ 11005120 11006283 11005875.556 11004528 11006799 + gene protein_coding_gene FALSE TRUE AT4G20380.1|AT4G20380.2|AT4G20380.3|AT4G20380.4|AT4G20380.5|AT4G20380.6|AT4G20380.7 LSD1 (LESION SIMULATING DISEASE) LSD1 monitors a superoxide-dependent signal and negatively regulates a plant cell death pathway. contains zinc-finger motifs. LSD1 negatively regulates a basal defense pathway that can act upstream or independently of both NIM1/NPR1 function and SA accumulation following avirulent or virulent pathogen challenge similar to LOL1 (LSD ONE LIKE 1) [Arabidopsis thaliana] (TAIR:AT1G32540.1); similar to zinc finger protein LSD1 [Brassica oleracea] (GB:AAL50981.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735) 0.102812880165608 1.26961292423677 0.238268359475892 1 1.54085614840543 16.9537735698214 0.102812880165608 0.0644705694928457
AT1G04830_at 6.67898881190819 6.6013712933787 6.49693064794656 6.35707761709184 7.45195610962778 6.82871587067711 6.9750700083003 6.9418233547096 7.10930112927076 6.43327952587189 6.49949735993747 6.10906860745954 6.74275602616543 6.6149361433324 6.44593959630661 6.6044022004805 6.68330310847078 6.57125228921904 6.7924945818873 0.200461969159134 0.193011035786595 0.196012839461809 0.199471333627262 0.194782317060881 0.202142337084264 0.189094090685686 0.189094090685686 0.200699297644526 0.192496379353949 0.192873839297001 0.201145931056435 0.189094090685686 0.196877906056140 0.191152928207011 0.193696366018891 0.207859588672540 0.196183896237303 0.195073620851648 1 1|0 -|/ 1359142 1360248 1359642.556 1358916 1361980 - gene protein_coding_gene FALSE TRUE AT1G04830.1 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G13730.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE83596.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) -0.13005365083011 -1.26926935812689 0.238384993063004 1 1.54047657946124 13.4476181285874 -0.13005365083011 0.111498393996610
AT2G02050_at 8.83038152939486 9.1849911472642 8.86719356524095 8.93780303160884 9.07416627741373 8.4118859693937 8.87085316980308 9.21258758839778 8.97108213079214 8.8363277075475 9.53122420162601 9.72676528480951 9.3275064618757 9.50135505788669 9.28233827624513 9.38419720384374 8.67810410066798 8.92386130554887 8.55731406278804 0.139215221411375 0.138359951456541 0.133693604277019 0.139437374694401 0.132227736782746 0.151068782388882 0.136317431058673 0.135975143469918 0.144403353047847 0.136529092043070 0.138344359374800 0.135496448824308 0.135281184440262 0.136852677050704 0.138101101569158 0.133970475449966 0.140423152735519 0.142069274735049 0.136542404194316 2 2 + 490025 490303 490167.545 489965 491993 + gene protein_coding_gene FALSE TRUE AT2G02050.1 NADH-ubiquinone oxidoreductase B18 subunit, putative similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN17398.1); similar to Os03g0129900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048851.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAA85408.1); contains InterPro domain p8MTCP1; (InterPro:IPR009069); contains InterPro domain NADH-ubiquinone oxidoreductase B18 subunit; (InterPro:IPR008698) 0.152118269193194 1.26923970738536 0.238395061115304 1 1.54044382472377 17.9650629282841 0.152118269193194 0.143346443649749
AT2G26920_at 6.69093363578043 7.03108294726596 7.16547023050326 7.1910800848354 7.30741304406544 7.08042399717894 6.87488707088047 6.78514642068926 7.0087951842479 6.67480610291094 6.31402666985926 6.50635798950395 6.5859625247937 6.2613099662273 6.16214895434818 6.3886434576201 6.61034366233388 5.83329646307318 6.97732188181867 0.203217795456988 0.194403394601687 0.204544471910648 0.199414142077117 0.195283669353178 0.213834047086436 0.194403394601687 0.200949226361218 0.194403394601687 0.199524658334674 0.196809354379289 0.194403394601687 0.195808144810177 0.206067317802374 0.213500196643240 0.195487999701684 0.200411968010770 0.202832090455323 0.201917952798295 2 2 + 11498088 11498583 11498282.636 11496082 11498829 + gene protein_coding_gene FALSE TRUE AT2G26920.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G12120.1); similar to Calcium-binding EF-hand; UBA-like [Medicago truncatula] (GB:ABE81075.1); similar to Os05g0409000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055525.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.106814429098748 -1.26877257911018 0.238553723733584 1 1.53992786111404 13.6256724792144 -0.106814429098748 0.0725870624902712
AT2G22125_at 8.74170564954652 8.76675404680278 7.9185825033774 8.167401182755 8.45563908553358 8.61207043036581 8.7333402378069 8.83423077447326 9.60760590712196 9.28540116566207 10.1083494093322 9.90036229399036 9.77989592219278 9.82254848590879 9.85400470207634 9.51164177034105 8.98691124997028 9.60789775376611 9.3425039468041 0.119142054738325 0.120844865504190 0.126145924811535 0.128245590778046 0.121312623293766 0.126439364696226 0.116590930311407 0.124634447895105 0.121702705164043 0.12045457828382 0.120342686687939 0.116740349551373 0.116590930311407 0.118585650755987 0.121633911834414 0.117066332186054 0.133240502847249 0.117625218238945 0.118451680441082 2 2|0 +|/ 9420801 9421254 9420990.9 9413343 9421598 + gene protein_coding_gene FALSE TRUE AT2G22125.1 binding similar to C2 domain-containing protein / armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G77460.1); similar to C2 domain-containing protein / armadillo/beta-catenin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G44120.1); similar to C2 domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD38184.1); similar to Armadillo/beta-catenin-like repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91813.2); similar to C2 [Medicago truncatula] (GB:ABE94518.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Sialidase; (InterPro:IPR011040); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0979849673657758 -1.26875186210784 0.238560762419701 1 1.53990498115888 18.0828597163210 -0.0979849673657758 0.0539497250930011
AT1G76110_at 8.81700808609077 8.53017405608952 8.8840599400336 8.68715892457936 9.36533725803378 8.81456916363418 9.69031806036814 9.15099083741174 9.06213528032304 9.18230501829388 9.08757407492635 8.89192920288313 9.16632037518296 9.10070494521802 8.41654570706564 9.45717491094512 9.44076800425623 8.80512892017935 9.4893700877394 0.144513739302651 0.146462181580357 0.146117383234508 0.151145728992052 0.141898127123220 0.136553160031750 0.138080903772830 0.137281012622601 0.142553776511220 0.151257506013942 0.138470244996676 0.135735037683546 0.135392330264181 0.142113424197754 0.159065525653067 0.136003691311521 0.147276159367016 0.138587554007436 0.136369553581884 1 1|0 -|/ 28560399 28561254 28560711.3 28559936 28562480 - gene protein_coding_gene FALSE TRUE AT1G76110.1 high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein similar to high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04880.1); similar to glutathione S-transferase GST 16 - like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC79159.1); contains InterPro domain HMG1/2 (high mobility group) box; (InterPro:IPR000910); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain High mobility group box; (InterPro:IPR009071) -0.154088316478242 -1.26747691537770 0.238994265219858 1 1.53849739496722 18.1376379056306 -0.154088316478242 0.146357918300079
AT4G03430_at 5.91828159872087 5.89349115180102 6.23116929981857 6.11096779380102 6.47665274838335 6.21627766956903 5.77604612253973 5.88243559012155 6.17640157585344 5.58037257882667 5.6448792952953 5.76661624694216 5.52282749328579 5.20300225285917 5.56340933603871 5.7682027915148 5.26721955783427 5.69871826478855 5.49543266147209 0.240767092514487 0.25428448610372 0.248933746866954 0.24326144749139 0.245933083979045 0.253040301339074 0.236403397280093 0.237295386902533 0.273878920454546 0.242551374941698 0.240281227651481 0.234785651222993 0.236026602877662 0.248804649718242 0.236587596688727 0.235766180896679 0.252129381331922 0.24456267304884 0.241612888098241 4 4 - 1517460 1517982 1517769.636 1517132 1520561 - gene protein_coding_gene FALSE TRUE AT4G03430.1 STA1 (STABILIZED1); RNA splicing factor, transesterification mechanism Encodes a nuclear protein similar to the human U5 small ribonucleoprotein-associated 102-kD protein and to the yeast pre-mRNA splicing factors Prp1p and Prp6p. STA1 expression is upregulated by cold stress, and the sta1-1 mutant is defective in the splicing of the cold-induced COR15A gene. Luciferase imaging was used to isolate a recessive mutant, sta1-1, with enhanced stability of the normally unstable luciferase transcript. This mutation also causes the stabilization of some endogenous gene transcripts and has a range of developmental and stress response phenotypes. similar to BGAL14 (beta-galactosidase 14), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G38590.1); similar to MGC97740 protein [Xenopus tropicalis] (GB:NP_001025642.1); similar to Protein prenyltransferase; PRP1 splicing factor, N-terminal [Medicago truncatula] (GB:ABE92650.1); similar to putative pre-mRNA splicing factor [Oryza sativa (japonica cultivar-group)] (GB:AAL58273.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain RNA-processing protein, HAT helix; (InterPro:IPR003107); contains InterPro domain PRP1 splicing factor, N-terminal; (InterPro:IPR010491); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.097413530766487 1.26591810863264 0.239525179960268 1 1.5367776779337 11.7157127519463 0.097413530766487 0.0531074478615657
AT3G53520_at 8.02106241314586 8.18939205886928 7.45186530431634 7.56271722135267 7.68853247862704 7.74958240618763 7.91269326706308 8.00291149204324 6.53022129016012 6.78713646502072 6.8754071427365 7.33007527878249 7.08631002159758 7.03393426913851 6.94410905904218 6.93489805536308 6.68906194092595 6.61059498814154 6.79544112346312 0.224237377374045 0.222230716823486 0.23559049904816 0.230832037025810 0.225627742811573 0.233527876554015 0.238124756616359 0.235951643416141 0.259411039971106 0.235102778099692 0.225714515442461 0.227529898588698 0.22780508534599 0.23592710175553 0.231216279771740 0.233237726489839 0.237859581648804 0.229062118297367 0.227915566471056 3 3|0 +|/ 19853566 19854984 19854362.7 19852462 19855286 + gene protein_coding_gene FALSE TRUE AT3G53520.1|AT3G53520.2|AT3G53520.3 UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1); catalytic|UXS1 (UDP-GLUCURONIC ACID DECARBOXYLASE 1) Encodes an isoform of UDP-glucuronic acid decarboxylase, which is predicted to be membrane-bound by PSORT analysis. This enzyme produces UDP-xylose, which is a substrate for many cell wall carbohydrates including hemicellulose and pectin. UDP-xylose is also known to feedback regulate several cell wall biosynthetic enzymes. similar to UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2), catalytic/ dTDP-glucose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT3G62830.1); similar to putative UDP-glucuronate decarboxylase 4 [Nicotiana tabacum] (GB:AAT40110.1); similar to UDP-glucuronic acid decarboxylase 1 [Populus tomentosa] (GB:AAX37334.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509)|similar to UXS2 (UDP-GLUCURONIC ACID DECARBOXYLASE 2), catalytic/ dTDP-glucose 4,6-dehydratase [Arabidopsis thaliana] (TAIR:AT3G62830.1); similar to UDP-glucuronic acid decarboxylase 1 [Populus tomentosa] (GB:AAX37334.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0922789517873936 -1.26434598185909 0.240061629508899 1 1.53504467264587 14.6435021488743 -0.0922789517873936 0.0396478163644405
AT3G02860_at 5.43816518797614 5.6155457728293 5.81490745822022 5.48754320628507 5.92010198808825 5.10518538940184 6.1735667950446 5.75547858193064 5.74797251233585 5.9972559841765 5.82862388599016 5.95666646107761 5.41083246683826 5.71824296313764 5.76939951353041 5.58978086255242 5.53378681763856 5.53556292326231 5.79910040495634 0.194222643080382 0.183328048826209 0.19434963506639 0.180195537933478 0.185916315059998 0.198949585505166 0.193122066317768 0.184335623266164 0.193908818238396 0.190039370367545 0.181605546932171 0.186770870352578 0.180481616491123 0.190605846728017 0.186390307851684 0.180832376114249 0.191632242537820 0.188419146600484 0.193701970849353 3 3 - 625327 626197 625877.455 625170 627374 - gene protein_coding_gene FALSE TRUE AT3G02860.1|AT3G02860.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to CTV.12 [Poncirus trifoliata] (GB:AAN62341.1) -0.172001110507898 -1.26390071172325 0.240213749275255 1 1.53455409425497 11.4217976077602 -0.172001110507898 0.171098301758361
AT1G28540_at 6.89923129144879 6.71700030711293 6.6088545398241 6.78366652689848 7.63108104616659 6.23166857865596 6.39981191531809 6.42152828199174 6.00892978825939 5.57021805823458 6.11464782987194 5.85344715782418 6.10346452358632 6.39436678236651 5.65297124157474 6.1567317029694 5.97307530869382 5.66334061712668 5.61519660164667 0.218839105461758 0.21809511745131 0.221781625776577 0.216803467316875 0.213214786650742 0.235902520819220 0.215523072645584 0.216802133403277 0.225476817099831 0.224679171662399 0.218221866620448 0.215703975693511 0.213492348975596 0.215422381923902 0.219994383495227 0.215684779048516 0.228502403955539 0.217078696364650 0.216056785454293 1 1 + 10035684 10035949 10035821.909 10035650 10036942 + gene protein_coding_gene FALSE TRUE AT1G28540.1 similar to Os06g0525000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057762.1); similar to Os06g0524500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057759.1) 0.230991110019943 1.26345664927347 0.240365536641206 1 1.53406495952580 12.5718322083680 0.230991110019943 0.24611477621155
AT3G61580_at 10.8986749133875 11.1636497957018 10.3864819378158 10.4433378742404 11.5740880057453 11.0584911938463 11.2408736149997 11.047857964399 11.1670794345453 10.8533060880784 11.3681327041962 11.1819805844094 10.9545885068204 10.9526580124620 10.8914024238711 10.4558319650783 10.6199051459985 11.1037551474591 10.8919223690734 0.102156201062823 0.102156201062823 0.106886902790589 0.102156201062823 0.10480560235501 0.102375135839329 0.105384023420412 0.105744330147191 0.109078222994802 0.102688221660654 0.102156201062823 0.102226481603584 0.106528801187975 0.107074680440968 0.103967066396938 0.106018474311179 0.118051716191352 0.109080024433983 0.102601819763922 3 3 + 22798020 22798518 22798163.909 22797022 22798947 + gene protein_coding_gene FALSE TRUE AT3G61580.1 delta-8 sphingolipid desaturase (SLD1) similar to delta-8 sphingolipid desaturase, putative [Arabidopsis thaliana] (TAIR:AT2G46210.1); similar to Fatty acid desaturase, putative [Medicago truncatula] (GB:ABE90798.1); similar to delta 8-sphingolipid desaturase [Borago officinalis] (GB:AAG43277.1); similar to delta-8 sphingolipid desaturase [Brassica napus] (GB:CAA11857.1); contains InterPro domain Fatty acid desaturase/sphingolipid desaturase; (InterPro:IPR012171); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Cytochrome b5; (InterPro:IPR001199); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257) -0.125950902577777 -1.26276193082545 0.240603162769445 1 1.53329995391120 21.9325824667766 -0.125950902577777 0.106191198130438
AT1G32370_at 5.41674797330679 5.60059941541296 5.57852512830085 5.47631976502855 5.8384296917554 5.8896200362921 5.34917097583047 5.1839251060222 5.23953405659654 5.20361124879778 5.52076336543961 5.21580308097324 5.25420303042512 4.98627116575105 5.37150931191738 5.26004371240651 4.99927747015625 5.24931329355584 5.60891433189028 0.21063844137154 0.203246676130065 0.213909936472446 0.209900112792972 0.222170154372952 0.216942382409857 0.201869126413678 0.207059180052209 0.209299071743567 0.208708985199842 0.206062634518233 0.20358725662353 0.214519271948676 0.213653829600259 0.202752706240729 0.202307845249514 0.225906410037365 0.207474698955208 0.209839015570290 1 1|0 +|/ 11677013 11677881 11677309 11676941 11678429 + gene protein_coding_gene FALSE TRUE AT1G32370.1|AT1G32370.2|AT1G32370.3|AT1G32370.4 TOM2B (tobamovirus multiplication protein 2B) Encodes a 122 amino acid basic protein involved in tobamovirus multiplication in planta. similar to hypothetical protein MtrDRAFT_AC144430g21v1 [Medicago truncatula] (GB:ABE91312.1) 0.0947871478838547 1.26257737399908 0.240666322786851 1 1.53309677131913 10.8330845612885 0.0947871478838547 0.0471312519600932
AT1G23830_at 5.96109402632786 6.3056131528288 5.93773031556317 5.99720774169815 6.07479909336751 5.65721439350268 3.58351145894096 4.50360501484453 5.00787980674973 4.90687846004066 4.61259535563028 4.73027273654649 4.98608315083542 4.80715741881545 3.78304468634477 3.89709841135584 4.68354824112421 4.36367170500134 4.92502359454006 0.254038499169809 0.238096782431785 0.245958583151892 0.237226676669106 0.234070820233158 0.243260683106357 0.240503959446003 0.243061477193796 0.244552901353087 0.234033237665594 0.229656876100789 0.234744135037854 0.229856647185619 0.236540027550077 0.248152517774269 0.234938136263662 0.246205528843951 0.234839165582992 0.234336993006652 1 1 - 8423052 8423537 8423295 8422949 8424077 - gene protein_coding_gene FALSE TRUE AT1G23830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23840.1) 0.182310991113624 1.26159932728297 0.241001266247887 1 1.53202034470263 10.2173608581260 0.182310991113624 0.185029357524891
ATCG00480_at 14.1048760890002 14.3475293415218 14.3195661571131 14.3407821298373 14.0514095521584 14.0311893867306 14.4329572978638 14.3961355150800 14.9574077938616 15.0281981299675 15.4510258045795 15.4005850692605 15.2699668890442 15.1281108156215 15.3163442329863 15.2266529724096 14.9658448124943 15.1861621881539 14.7810782496596 0.0517307830701069 0.0518425213129412 0.0560194341020647 0.0536733966341245 0.0519907117391441 0.0584594970895926 0.0530705861284804 0.055823332662053 0.0590124150277475 0.0531144775854226 0.0511058153088694 0.0512906894532508 0.0549975989652548 0.0567488102963054 0.0559296301694959 0.0511058153088694 0.055599320709564 0.0555713177674024 0.0529859545585786 C C - 52689 53180 52983.182 52660 54156 - gene protein_coding_gene FALSE TRUE ATCG00480.1 chloroplast-encoded gene for beta subunit of ATP synthase Identical to ATP synthase subunit beta (EC 3.6.3.14) (ATPase subunit beta) (ATP synthase F1 sector subunit beta) (atpB) [Arabidopsis Thaliana] (GB:P19366); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08670.1); similar to ATP synthase beta chain 2, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08690.1); similar to ATP synthase beta chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G08680.1); similar to ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) (GB:Q9MS49); similar to ATP synthase subunit beta (ATPase subunit beta) (ATP synthase F1 sector subunit beta) (GB:Q9MTG8); similar to ATP synthase beta subunit [Cleome hassleriana] (GB:AAK72746.1); contains InterPro domain ATPase, F1 complex, beta subunit; (InterPro:IPR005722); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; (InterPro:IPR004100); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding; (InterPro:IPR000194); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793); contains InterPro domain AAA ATPase; (InterPro:IPR003593) 0.0931103929162873 1.26128953066748 0.241107440816997 1 1.53167950070090 29.3357130116123 0.0931103929162873 0.0427747643368799
AT2G17040_at 8.57857663857709 8.96609666500193 9.45470131903849 9.48230145334887 9.46697981570319 8.67258638353738 8.37276207270826 8.44845755505234 7.64386083773896 6.04679134118268 5.19154963979117 6.09271469549061 5.14831245510226 5.81631450062701 5.42018784734269 4.51339019207422 5.10526433326409 5.97677583194195 5.51799644561872 0.224845902896806 0.216244902172874 0.218913105212633 0.219440476771102 0.220435180505502 0.223894793208592 0.215086099021264 0.223207590136588 0.230344243974537 0.216113153603098 0.217540173061258 0.215086099021264 0.226309031711703 0.229186344104894 0.22255342626925 0.220173162591481 0.232380285387163 0.21983828586312 0.228848658902827 2 2 + 7414578 7415153 7414908.364 7414205 7415352 + gene protein_coding_gene FALSE TRUE AT2G17040.1 ANAC036 (Arabidopsis NAC domain containing protein 36); transcription factor similar to ANAC034/ANAC035 (Arabidopsis NAC domain containing protein 34, Arabidopsis NAC domain containing protein 35), transcription factor [Arabidopsis thaliana] (TAIR:AT2G02450.2); similar to NAC6 protein [Glycine max] (GB:AAX85983.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) -0.158575088910228 -1.26103942035070 0.241193187973287 1 1.53140436487806 14.8357810187715 -0.158575088910228 0.153592645581075
AT3G13120_at 11.2536003209089 11.1493288244939 10.5787587621453 10.6586987351891 11.2046039832157 11.0597661764670 11.3991116992471 11.1867055394894 11.063839759839 10.9234199649578 11.0544314343947 11.3361415923134 10.8076432711774 10.8160527779275 11.7222262114726 11.1378182607491 10.9871780672308 10.9330844230831 10.7701093355784 0.0926954701384785 0.0934963807890427 0.0925898454276407 0.0937943951745282 0.091008176570388 0.0953386540946246 0.0930320174229476 0.09166369113161 0.0995801562906277 0.0933668745861326 0.089575183012702 0.0912242190911298 0.095152782437593 0.0954970948005762 0.093575343407692 0.089575183012702 0.0933484426155087 0.0970039793547134 0.0958126914953917 3 3 - 4220342 4221497 4220947.182 4219782 4221637 - gene protein_coding_gene FALSE TRUE AT3G13120.1 30S ribosomal protein S10, chloroplast, putative Identical to 30S ribosomal protein S10, chloroplast precursor (RPS10) [Arabidopsis Thaliana] (GB:Q9LK61); similar to 30S ribosomal protein S10-like [Brassica napus] (GB:AAW22623.1); contains InterPro domain Ribosomal protein S10; (InterPro:IPR001848); contains InterPro domain Ribosomal protein S10, bacterial form; (InterPro:IPR005731) -0.0957653485560188 -1.26103905139108 0.241193314485219 1 1.53140395902767 22.0705442676039 -0.0957653485560188 0.049963764970465
AT4G01850_at 10.4970720796809 10.5300720765991 10.3418023890917 10.4916902635273 10.5542695398771 10.5011615430969 10.6281984153656 10.7596447087248 10.8142584624545 10.6133174370264 10.5510720659309 10.6755433330321 10.5629338273745 10.544540599072 10.7180864200533 10.8152514658997 10.7957362033569 10.5879668983439 10.6924669981268 0.0738935822210269 0.0735107825522642 0.0765978471050745 0.0784590111886407 0.0769218312637691 0.0753966979741428 0.0749391867538488 0.0788384319464107 0.0845498712660403 0.0722422421450636 0.0769488599099357 0.073101973857133 0.0733721045988311 0.0736287346023506 0.0746024707731145 0.07169548133223 0.0763554779119168 0.0779921306477308 0.0726456336679215 4 4 - 796321 796841 796580.545 796097 798286 - gene protein_coding_gene FALSE TRUE AT4G01850.1|AT4G01850.2 MAT2/SAM-2 (S-adenosylmethionine synthetase 2); methionine adenosyltransferase|MAT2/SAM-2 (S-adenosylmethionine synthetase 2) Identical to S-adenosylmethionine synthetase 2 (EC 2.5.1.6) (Methionine adenosyltransferase 2) (AdoMet synthetase 2) (SAM2) [Arabidopsis Thaliana] (GB:P17562;GB:Q42263); similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT3G17390.1); similar to MAT3 (METHIONINE ADENOSYLTRANSFERASE 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT2G36880.1); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71235.1); similar to S-adenosylmethionine synthetase (Methionine adenosyltransferase) (AdoMet synthetase) (GB:P49611); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71233.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) -0.0909027502153656 -1.26048849657583 0.241382154994630 1 1.53079844357923 21.2195250357465 -0.0909027502153656 0.0361572291239462
AT2G30530_at 6.85104934743597 6.51256405441658 7.18085096715982 6.7775903752674 7.23888944732164 7.18607826502756 6.78859555519132 6.36470920250278 5.74873576401708 6.21474004881546 5.96219388696686 5.83037712563295 5.81708192180749 6.29073110744572 5.83508438048034 5.9349812682716 5.94962998277695 5.48040397955176 6.30115204107739 0.187400753657232 0.187170770323773 0.195221275724263 0.190474178378177 0.191161742443344 0.200864787278048 0.186527369131336 0.188384404009281 0.192984924080424 0.192959530319559 0.186042989972117 0.186042989972117 0.194348980097115 0.186042989972117 0.191208930477114 0.186042989972117 0.190297534861495 0.190576826955596 0.189974897917405 2 2|0 +|/ 13017165 13017787 13017564.25 13015993 13018140 + gene protein_coding_gene FALSE TRUE AT2G30530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G01970.1); similar to Os05g0315200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055171.1); similar to Os11g0118800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065600.1); similar to expressed protein-like protein [Sorghum bicolor] (GB:AAO16693.1) 0.132986947893756 1.26032591839855 0.241437942962152 1 1.53061966889921 12.8504257724171 0.132986947893756 0.117328006707442
AT1G23860_at 6.79914419168882 7.04874632085295 6.88111949217126 7.23808540041878 7.97696037709457 8.15793682433783 6.90266213087414 7.47737598844132 6.76482805367252 6.29414174852206 6.35123336728021 5.59222573116361 6.31064722695248 6.49616091290681 6.45093485024449 6.36262254348453 6.99686955474786 6.73406310982628 6.852090703379 0.213868881056754 0.209947772437188 0.209024137477507 0.215464246908228 0.209731493319446 0.212243497512579 0.209988287156602 0.215599742135392 0.216099211683781 0.209840539130842 0.209020328450701 0.209551411633361 0.206787623045133 0.210128376542917 0.208370786895770 0.206787623045133 0.206787623045133 0.208726194404787 0.208463315751998 1 1|0 -|/ 8428228 8429115 8428579.6 8427345 8429308 - gene protein_coding_gene FALSE TRUE AT1G23860.1|AT1G23860.2 SRZ-21 Encodes a 9G8-like serine-arginine rich (SR) protein that interacts in vivo with U1-70K, a U1 small nuclear ribonucleoprotein 70-kDa protein that is involved in nuclear precursor mRNA processing. similar to SRZ-22 (serine/arginine-rich 22) [Arabidopsis thaliana] (TAIR:AT4G31580.2); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84871.1); similar to Os06g0187900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057018.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.140683929546281 1.26023025114101 0.241470775777618 1 1.53051447809514 13.8346862560351 0.140683929546281 0.128664062271050
AT3G53280_at 7.54917101969309 7.56914994493472 7.17763107197053 6.686098868368 8.08137175435975 7.38622366037452 6.98486011077601 6.98961973530236 7.08853287950895 6.99446207872514 7.08296813828271 7.58724984870606 7.56511881034667 7.6051193428694 7.03199298563304 7.34761888047435 7.29984382238096 7.2622183250082 7.21670773228268 0.152460102284897 0.162173755500392 0.15252902720772 0.151700896138919 0.159493735125816 0.170833890395884 0.151806307910595 0.156518419031968 0.163707933539540 0.167349050132533 0.152920185869152 0.151164748931732 0.153250738361186 0.158646073249276 0.156753594804858 0.163945218343929 0.158590823504216 0.156093476396544 0.154286818787856 3 3 + 19767845 19768374 19768121.727 19766682 19768591 + gene protein_coding_gene FALSE TRUE AT3G53280.1 CYP71B5 (CYTOCHROME P450 71B5); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B5 (EC 1.14.-.-) (CYP71B5) [Arabidopsis Thaliana] (GB:O65784); similar to CYP71B38 (cytochrome P450, family 71, subfamily B, polypeptide 38), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G44250.1); similar to CYP71B22 (cytochrome P450, family 71, subfamily B, polypeptide 22), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26200.1); similar to CYP71B21 (cytochrome P450, family 71, subfamily B, polypeptide 21), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26190.1); similar to Cytochrome P450 71B8 (GB:P58048); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.153748254232702 1.25862534844208 0.242022130906039 1 1.52875059421349 14.5268493537482 0.153748254232702 0.147376809424277
AT1G76810_at 7.6622776346965 7.66819754538444 7.59509047900759 7.70351759560375 7.77420175978526 7.34833989363978 7.65339729797 7.54166574749822 7.37346515711815 7.47260791412676 7.89869116064468 7.81756619998616 7.45914025423158 7.43748430262955 7.79403729154595 7.78325565016262 7.4874510294223 7.16837594228012 7.24096904630879 0.161023081187208 0.167180617640946 0.165850636289908 0.161791167811610 0.171361258862805 0.172937900510755 0.162985323617123 0.178534369584704 0.180523437410735 0.163075311176083 0.168324272468133 0.163777663603463 0.166981978622638 0.171489533530999 0.16395553257953 0.162806779362399 0.175631843883684 0.179160204206646 0.168615299223257 1 1|0 -|/ 28836415 28837055 28836765.333 28835900 28841480 - gene protein_coding_gene FALSE TRUE AT1G76810.1 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G21160.1); similar to eukaryotic translation initiation factor 2 family protein / eIF-2 family protein [Arabidopsis thaliana] (TAIR:AT1G76825.1); similar to translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G76720.1); similar to translation initiation factor [Pisum sativum] (GB:AAN32916.1); similar to putative translation initiation factor IF-2 [Oryza sativa (japonica cultivar-group)] (GB:AAT44302.1); similar to GTPase [Cryptococcus neoformans var. neoformans JEC21] (GB:XP_569115.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.108652865983387 1.25369130608668 0.243723770938772 1 1.52333708342060 15.1023847948886 0.108652865983387 0.0784748527210376
AT4G28440_at 7.80123445708501 7.81128001563091 7.87723323886683 7.73588262225109 7.56722092301757 7.32315366966205 7.53307256806488 7.62595143747291 7.31145976564921 6.84896361702265 7.29037060058124 7.25317421888402 7.4768357186977 7.70451859166895 7.47533354061532 7.19463472448512 7.11057235922744 6.80789211735201 6.9313728513331 0.147580864706105 0.143155983690196 0.146349627744438 0.142748073414748 0.145423626563629 0.148291632914441 0.142748073414748 0.147296242438438 0.145484856988819 0.147944019217345 0.144240785333039 0.146536888200535 0.149204268800782 0.146524847443413 0.142748073414748 0.148816853074258 0.163699814373857 0.159132304073630 0.155783277276677 4 4 + 14060080 14060920 14060436.273 14059994 14061392 + gene protein_coding_gene FALSE TRUE AT4G28440.1 DNA-binding protein-related Identical to Protein At4g28440 [Arabidopsis Thaliana] (GB:O49453); similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT2G33845.1); similar to Os01g0238600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042538.1); similar to unknown [Medicago sativa] (GB:AAZ32857.1); similar to Os01g0754100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044277.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) 0.0957778665783051 1.25360220355457 0.243754591777493 1 1.52323945153732 14.8192612308101 0.0957778665783051 0.051416814744751
AT4G16790_at 4.30598094326714 4.7749918523048 4.99978433801393 5.68056764497056 5.50314393610178 5.37564645451611 6.33099632337999 6.36442209090815 4.10740515745623 4.72333219558629 4.79108503699626 4.85523562009245 4.45866009865598 4.20778828245833 4.50899407303146 4.9635119566809 5.04939167337035 4.42117909014073 4.06950916205227 0.222577887020316 0.215187591822611 0.217478369073053 0.223840661585404 0.221013970707929 0.223180948664238 0.234657710414313 0.219635626343638 0.228085963517969 0.226190109300958 0.223945359185709 0.221633915899822 0.220428066714941 0.229707770886747 0.222908296300496 0.221549438969274 0.222752313338676 0.220756313426057 0.222947169907142 4 4 - 9451767 9452284 9452109.364 9451604 9453273 - gene protein_coding_gene FALSE TRUE AT4G16790.1 hydroxyproline-rich glycoprotein family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60380.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96200.1); contains InterPro domain Elongation factor Ts; (InterPro:IPR001816) 0.151293174082812 1.25325543942219 0.243874569447451 1 1.52285953708312 9.8954731482461 0.151293174082812 0.144871669019855
AT1G34210_at 6.34168424347352 6.39910776417825 6.52396306778742 6.52376233554582 7.31184261848413 6.71162323875237 7.55322408186187 7.44982377974606 7.09859408334437 7.99486806166161 7.51167802962452 7.58605022762381 7.7583059024253 7.5749276158325 7.58316799667578 8.17901223028481 7.4441982371731 7.30287522305001 8.0031176593483 0.184332624446503 0.187566772064610 0.190226874473501 0.188710276836111 0.179875244111035 0.191061386608640 0.183431721618781 0.186213981041008 0.185513132274655 0.187155982461451 0.188164199447064 0.179875244111035 0.179875244111035 0.179969073186723 0.184920312944003 0.179875244111035 0.187838452721028 0.179905588369491 0.187446401941511 1 1 + 12462100 12462664 12462324.182 12458648 12462883 + gene protein_coding_gene FALSE TRUE AT1G34210.1 SERK2 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 2); kinase Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. similar to SERK1 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G71830.1); similar to BAK1 (BRI1-ASSOCIATED RECEPTOR KINASE), kinase [Arabidopsis thaliana] (TAIR:AT4G33430.1); similar to ATSERK4 (SOMATIC EMBRYOGENESIS RECEPTOR-LIKE KINASE 4), protein binding / protein kinase/ transmembrane receptor protein serine/threonine kinase [Arabidopsis thaliana] (TAIR:AT2G13790.1); similar to somatic embryogenesis receptor kinase 1 [Medicago truncatula] (GB:AAN64293.1); similar to somatic embryogenesis receptor kinase 1 [Citrus unshiu] (GB:BAD32780.1); similar to benzothiadiazole-induced somatic embryogenesis receptor kinase 1 [Oryza sativa (indica cultivar-group)] (GB:AAR26543.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.124747577060510 -1.25275291595159 0.244048525882208 1 1.52230909633283 14.5100723250392 -0.124747577060510 0.105868222358181
AT1G53510_at 8.04744613808711 8.3660630189888 8.4459233387922 8.1667539903767 9.12691498732773 8.25496304682988 9.0146043769434 8.52961615361742 9.50046987420211 9.54650642072777 9.20719301960329 9.06151691155566 9.12409019065208 9.33118817827998 8.19384564226233 9.31359138278493 8.89699622829383 9.0682832119964 9.15217622004242 0.160778248589673 0.144652723856907 0.145727210336080 0.149363235874094 0.146048147565335 0.153880188806664 0.150885577233029 0.139736131993155 0.154652503483503 0.137392743493780 0.147666258896253 0.141714060322476 0.146556938398037 0.140124484161568 0.149783475768686 0.134846050778669 0.159498545462191 0.141113006954674 0.134846050778669 1 1|0 -|/ 19974698 19975276 19975000.7 19974332 19978061 - gene protein_coding_gene FALSE TRUE AT1G53510.1 ATMPK18 (Arabidopsis thaliana MAP kinase 8); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 18 (EC 2.7.11.24) (MAP kinase 18) (AtMPK18) (MPK18) [Arabidopsis Thaliana] (GB:Q9C5C0;GB:Q9LPG7); similar to ATMPK19 (Arabidopsis thaliana MAP kinase 19), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G14720.1); similar to ATMPK20 (Arabidopsis thaliana MAP kinase 20), MAP kinase [Arabidopsis thaliana] (TAIR:AT2G42880.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to double HA-tagged mitogen activated protein kinase 19 [synthetic construct] (GB:ABG54346.1); similar to mitogen-activated protein kinase homologue [Medicago sativa] (GB:AAD28617.1); similar to double HA-tagged mitogen activated protein kinase 18 [synthetic construct] (GB:ABG54345.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.182961495194883 -1.25257781012003 0.244109165795261 1 1.52211732792304 17.7061884317051 -0.182961495194883 0.187584071844305
AT4G26370_at 8.46617700428286 8.34975994722607 7.33093488088969 7.40372542987897 8.60490605484309 7.97209867099142 7.4084262495902 7.11783929940575 6.76300011224582 7.14331156557178 6.91746973831155 7.69332821361315 6.88351082645081 7.12338622854129 8.2974498045684 7.02834562529783 7.0836103610432 6.94534646657784 6.9961183854916 0.20763565040819 0.208180441330168 0.210454641375311 0.212524069616877 0.205155744432263 0.216264334891589 0.205449187162560 0.208115809823125 0.212269935285401 0.207510672456877 0.209794529767062 0.204629143382920 0.210602311918433 0.207155885669085 0.20912619616165 0.204500080285583 0.227871700715735 0.206160699707331 0.215503928296619 4 4|0 -|/ 13334201 13335426 13334855 13333733 13336239 - gene protein_coding_gene FALSE TRUE AT4G26370.1|AT4G26370.2 antitermination NusB domain-containing protein similar to hypothetical protein M3E9.200 [Sorghum bicolor] (GB:AAL73975.1); similar to Os03g0656900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050811.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027)|similar to hypothetical protein M3E9.200 [Sorghum bicolor] (GB:AAL73975.1); contains InterPro domain NusB/RsmB/TIM44; (InterPro:IPR006027) 0.135722427152676 1.25140743346657 0.244514794477242 1 1.52083603757250 14.9387497400486 0.135722427152676 0.122824608102368
AT3G48750_at 8.83781780524997 9.13692981344646 8.74802033362313 9.06838010540079 8.63198167302081 8.58721558566679 8.43193592630676 8.59373522988709 8.70974360935752 8.6381728798727 9.07935680558295 9.00008840077834 8.81713370222263 8.62669715184438 9.0461298867761 8.87156493484607 8.83901165767673 9.10614376593288 8.78866523348072 0.134067130736136 0.138157260113904 0.150782064874787 0.142841152871691 0.146834184918810 0.148294521347886 0.141480610419259 0.143544436832797 0.155372537939803 0.142302601391192 0.152104724312533 0.137387595279301 0.141680270460008 0.143583285735421 0.138070313423783 0.139565677177131 0.146031170658301 0.14796960343762 0.135632597549702 3 3|0 +|/ 18083813 18085235 18084385.6 18082521 18085626 + gene protein_coding_gene FALSE TRUE AT3G48750.1 CDC2/CDC2A/CDC2AAT/CDK2/CDKA;1 (CELL DIVISION CONTROL 2); cyclin-dependent protein kinase/ kinase/ protein binding A-type cyclin-dependent kinase. Together with its specific inhibitor, the Kip-related protein, KRP2 they regulate the mitosis-to-endocycle transition during leaf development. Dominant negative mutations abolish cell division. Loss of function phenotype is reduced fertility with failure to transmit via pollen. Pollen development is arrested at the second mitotic division. Expression is regulated by environmental and chemical signals. Part of the promoter is responsible for expression in trichomes. Functions as a positive regulator of cell proliferation during development of the male gametophyte, embryo and endosperm. Identical to Cell division control protein 2 homolog A (EC 2.7.11.22) (EC 2.7.11.23) (CDC2A) [Arabidopsis Thaliana] (GB:P24100;GB:Q9M307); similar to CDKB1,2 (cyclin-dependent kinase B1,2), kinase [Arabidopsis thaliana] (TAIR:AT2G38620.2); similar to cyclin dependent protein kinase homolog; similar to moth bean p34cdc2 protein, PIR Accession Number JQ2243 (GB:AAA92823.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.109933305671254 1.25118520071175 0.244591879150796 1 1.52059283404391 17.5722319069641 0.109933305671254 0.0812217263534366
AT3G12680_at 5.49559626461473 5.71727998222051 5.71505757725943 5.71569677421543 6.0244041706306 6.27637970113963 5.10394054507748 5.56863765710173 5.83559279790695 5.35271418155158 5.43049583332286 5.26114179459217 5.3486671278382 5.53217708379241 5.54407748440466 5.5532573180882 5.28526448729419 5.78928700989953 5.87810547575273 0.222112563772266 0.216742428207194 0.221557158306174 0.213148181620011 0.220998363138582 0.228283611235855 0.211883522806409 0.220720193533050 0.225575570645994 0.215243496247767 0.222623971531874 0.216602389294374 0.211883522806409 0.213794950529741 0.215470470747192 0.214372617210501 0.220712914191429 0.216046324148221 0.216731954590025 3 3|0 -|/ 4025312 4026499 4025805.5 4025083 4029147 - gene protein_coding_gene FALSE TRUE AT3G12680.1 HUA1 (ENHANCER OF AG-4 1) Member of the floral homeotic AGAMOUS pathway. similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT2G47850.3); similar to Unknown (protein for MGC:30371) [Mus musculus] (GB:AAH19429.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.120381404612297 1.25068446159546 0.244765641932603 1 1.52004494813749 11.280549168603 0.120381404612297 0.099198090183931
AT1G10940_at 7.37058290067033 7.55792376756798 8.0115662084329 7.96900366674344 8.2594973319243 7.59881783086237 7.96855250155829 7.84003419001087 7.46708560136428 7.93282073649778 7.98035412147878 7.67387314813986 7.80449961424711 7.8740949444507 7.35453351231729 8.20622884517556 7.62525120565112 7.6496911732882 7.93281235011251 0.171528659521315 0.164064328790472 0.164962054958229 0.167118904492541 0.159274747561474 0.171238199274578 0.165940988869647 0.169105120342696 0.191203278264334 0.169197409391589 0.163641847871808 0.157880291223741 0.162453008015645 0.174361704394947 0.159208578707251 0.157880291223741 0.174654581888762 0.163199070313668 0.163756534168404 1 1|0 -|/ 3656209 3656932 3656421.889 3655777 3658578 - gene protein_coding_gene FALSE TRUE AT1G10940.1 ASK1 (ARABIDOPSIS SERINE/THREONINE KINASE 1); kinase Encodes a plant protein kinase similar to the calcium/calmodulin-dependent protein kinase subfamily and the SNF1 kinase subfamily (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Kinase activity of its homolog in tobacco is induced by hyperosmotic condition within 1 minute. Identical to Serine/threonine-protein kinase ASK1 (EC 2.7.11.1) (ASK1) [Arabidopsis Thaliana] (GB:P43291); similar to SNRK2-10/SNRK2.10/SRK2B (SNF1-RELATED PROTEIN KINASE 2.10, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-10), kinase [Arabidopsis thaliana] (TAIR:AT1G60940.2); similar to serine/threonine protein kinase (GB:AAA33003.1); similar to serine/threonine protein kinase (GB:AAA33004.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.134470422070469 1.25037993310596 0.244871367368955 1 1.51971181807344 15.5963166580139 0.134470422070469 0.121128688172175
AT3G43270_at 6.18723676971555 6.5919692514317 5.98555396112118 6.00351890724197 5.90416160547961 6.52485953403035 6.54107917692952 6.85295055113938 6.32158345506205 6.05769482843858 6.7727133796431 6.67303230992022 6.58825238178744 6.3291999991719 6.47050023661483 6.95586809891637 6.84003210392815 6.88688411339517 5.49179359183539 0.191699432751606 0.189586379947574 0.190975846360863 0.188775320617515 0.190890780907004 0.193714036542602 0.196780499163462 0.189039560641738 0.188774879431953 0.184967368517968 0.191719757511784 0.186149679918348 0.187879211775715 0.187124368915965 0.189671983298621 0.183771598311771 0.193873056097115 0.184517157729216 0.190479376916969 3 3 - 15233390 15233919 15233652.818 15233113 15236448 - gene protein_coding_gene FALSE TRUE AT3G43270.1 pectinesterase family protein similar to pectinesterase family protein [Arabidopsis thaliana] (TAIR:AT4G33220.1); similar to Pectinesterase PPE8B precursor (Pectin methylesterase) (PE) (GB:Q43062); similar to pectin methylesterase PME1 [Vitis vinifera] (GB:AAK81875.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070) 0.146875467070525 1.25023870541307 0.244920411337945 1 1.51955734441917 12.6472083628199 0.146875467070525 0.139162292157223
AT4G29830_at 5.89096684392573 5.50925643922408 4.96773860603245 5.04799537860332 5.49328115556315 5.49109263714047 5.16714939438787 5.36961537554602 4.36675116171424 4.62343933636117 5.03971172327864 5.31082770544458 4.93795535683271 5.05720090142543 5.06730532297057 4.73985259227409 4.67203858921667 4.26689907500087 4.32513669745257 0.196288184958638 0.206821280547296 0.203555076579047 0.197641373394264 0.198875584091854 0.204332899961423 0.196288184958638 0.206240639867484 0.212181972501481 0.20045686897901 0.196288184958638 0.198279193885116 0.199568507752454 0.199951149539886 0.199088524672183 0.196402260644228 0.202359947854716 0.219009631914933 0.200480077259781 4 4 + 14598564 14599107 14598877 14597667 14599306 + gene protein_coding_gene FALSE TRUE AT4G29830.1 VIP3 (VERNALIZATION INDEPENDENCE 3); nucleotide binding The protein is composed of repeats of WD motif which is involved in protein complex formation. The gene is involved in flower timing and flower development. similar to WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related [Arabidopsis thaliana] (TAIR:AT2G41500.1); similar to Os11g0660300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068403.1); similar to vernalization independence 3-like protein [Solanum tuberosum] (GB:ABC01893.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.106905720430018 1.24842775741816 0.245550021435598 1 1.5175775712189 10.0295951322103 0.106905720430018 0.0760537831558958
AT3G23980_at 7.26682414878415 7.23713359480952 7.14360407871833 6.67587866276526 7.12193919830628 7.12422530109458 7.20019965217843 7.27139160018469 6.78810510536164 6.52820157159701 6.97237696652869 6.99067406281138 6.27561728086841 6.58357161712745 7.0639471207177 7.02868941888205 6.40175114949787 6.65642797759212 6.90175467433916 0.177309455469604 0.183339393845615 0.185879193133774 0.180387292288026 0.177495364468389 0.176648909909700 0.181032771929338 0.183042170381927 0.189540063222193 0.182476101606435 0.187467131901442 0.176648909909700 0.181273696872912 0.180961510082400 0.180073386676949 0.183364175291013 0.197178887180328 0.178320902364887 0.181811770202636 3 3 - 8662799 8663800 8663392.667 8662440 8667759 - gene protein_coding_gene FALSE TRUE AT3G23980.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to heavy meromyosin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72706.1); similar to Os01g0911800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045163.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.110098636640407 -1.24795823608206 0.245713478857546 1 1.51706458996462 13.8731423961147 -0.110098636640407 0.082036328091754
AT3G28200_at 6.1780969719211 6.50121651433455 4.74061309361988 5.24381112165907 6.0630534897867 6.26024857233895 7.44498867411457 7.39489483865512 7.62163880985689 6.56528464592572 8.89270326957027 8.65142169355709 8.03494383638033 8.56075874533877 8.41907153647697 7.63636413727264 7.27631221279548 7.73549438564034 7.11489352537595 0.226848215343157 0.226088493912074 0.249536365510708 0.249023261531071 0.228370081197763 0.243788668239851 0.239325081810677 0.226839300004589 0.23796105957874 0.22736392710516 0.23863211394332 0.229490935071424 0.228582097852164 0.224649265117264 0.227753970512927 0.223719638920008 0.233270156578586 0.228815421757042 0.234018337315598 3 3 + 10519682 10520098 10519860.182 10519307 10520403 + gene protein_coding_gene FALSE TRUE AT3G28200.1 peroxidase, putative Identical to Peroxidase 31 precursor (EC 1.11.1.7) (Atperox P31) (ATP41) (PER31) [Arabidopsis Thaliana] (GB:Q9LHA7;GB:Q94CB9); similar to peroxidase, putative [Arabidopsis thaliana] (TAIR:AT5G40150.1); similar to Haem peroxidase, plant/fungal/bacterial [Medicago truncatula] (GB:ABE90190.1); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016); contains InterPro domain Plant peroxidase; (InterPro:IPR000823) -0.12629480683119 -1.24629524360252 0.246293154539514 1 1.51524869896695 13.8541101033113 -0.12629480683119 0.109313822783917
AFFX-Athal-5SrRNA_at 9.02276029651765 9.6057580373935 9.98683097573782 10.2410516599190 9.56047422117248 8.94794133359740 9.82244916223567 9.6413842191369 9.60399970397671 10.3572123324740 9.7658077490643 10.2686520310346 9.54005847875346 9.5529414248119 8.86441091256958 9.81052307972894 8.76734380453866 9.89398334594062 10.1463732857547 0.132186739801238 0.130367572011955 0.131376328774979 0.132844652607159 0.130055407044992 0.139970882951794 0.129924368457815 0.129437013936116 0.142019881781236 0.130753156770416 0.128072737885847 0.131661666158129 0.132783928699543 0.139363097554214 0.134779511996275 0.128223347609995 0.137356070850008 0.135242347502166 0.130298751863833 NA NA NA NA NA FALSE FALSE -0.158455025988734 -1.24623979408264 0.246312502351383 1 1.51518817905835 19.4004946769007 -0.158455025988734 0.155988941100169
AT4G34270_at 6.93801651136625 6.99275340748716 6.83168240607929 7.10506877440279 7.15099286355282 7.2248197685108 6.63241599392302 6.72203339842298 6.52077385668295 6.39155869988353 6.19315016671604 5.74307054911682 6.09573050729532 6.10415801064383 6.11482368899187 5.94681606202287 6.08124436654155 6.01725443709792 6.54258903051326 0.195887376621253 0.199558186972732 0.196869187285792 0.195024993840839 0.20262684128446 0.201239099728984 0.197799953976738 0.202365629366877 0.200248019320425 0.190613358684890 0.195899020115937 0.197189128843881 0.190894640887495 0.196684824482780 0.203420947482468 0.196246371193700 0.19933644756036 0.198242897072359 0.194073822946656 4 4|0 -|/ 16404186 16405434 16404880.7 16403848 16406244 - gene protein_coding_gene FALSE TRUE AT4G34270.1 TIP41-like family protein similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54365.1); similar to Os03g0760600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051346.1); contains InterPro domain TIP41-like protein; (InterPro:IPR007303) -0.0955533817350311 -1.24619354673863 0.246328640245194 1 1.51513770415659 13.2107253084247 -0.0955533817350311 0.0522664981073323
ATCG01090_at 13.2683830808171 13.6054186665851 13.639683864971 13.6761868490779 13.5684021145898 13.0501234081151 13.6655160182808 13.7252502821057 14.5390088363238 14.4223176241257 14.9252025414244 14.9172423889010 14.8375691773789 14.7100542158071 14.7341322051575 14.7808174162844 14.4441641352837 14.8766748827053 14.3750630612527 0.0766021605605548 0.0766738571401119 0.0854455817645259 0.0785134683957377 0.077444824230771 0.0860335546506671 0.0786707214184087 0.0785210920524911 0.0815888159316027 0.0766281818572172 0.0774294491945823 0.0766021605605548 0.0766021605605548 0.0823049925465679 0.0785987269151099 0.0766021605605548 0.0850319068450331 0.0792719345231035 0.0766021605605548 C C - 119318 119738 119572.727 119244 119762 - gene protein_coding_gene FALSE TRUE ATCG01090.1 Encodes subunit of the chloroplast NAD(P)H dehydrogenase complex Identical to NAD(P)H-quinone oxidoreductase subunit I, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase subunit I) (NDH subunit I) (NADH-plastoquinone oxidoreductase subunit I) (ndhI) [Arabidopsis Thaliana] (GB:P56755); similar to ATMLO14 (ARABIDOPSIS THALIANA MILDEW RESISTANCE LOCUS O 14), NADH dehydrogenase (ubiquinone) [Arabidopsis thaliana] (TAIR:AT1G16700.1); similar to NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) [Arabidopsis thaliana] (TAIR:AT1G79010.1); similar to NADH dehydrogenase subunit I [Nicotiana tabacum] (GB:NP_054561.1); contains InterPro domain NADH-quinone oxidoreductase, chain I; (InterPro:IPR010226); contains InterPro domain NADH-plastoquinone oxidoreductase, subunit I; (InterPro:IPR004497); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450) 0.125112996854184 1.24496675741934 0.246757046064874 1 1.51379922679473 28.1367181827021 0.125112996854184 0.107670942315039
AT4G26700_at 9.45082413059885 9.52441433080318 9.54326568236482 9.4860283148877 10.1775728256690 9.67495688188419 10.3921754233569 10.1372654774919 9.89034215850763 10.2135645508704 10.1532720037533 9.8969243483232 9.94583752919377 9.92077065238498 9.71223604064782 10.1175865392198 9.90585856603991 10.0800768770089 10.0460071531124 0.096538503670297 0.0913633447326133 0.0942731844814267 0.0933256296464316 0.0913174666857144 0.100309972313100 0.093641383920743 0.0910736671683322 0.100695252006224 0.09234601197313 0.0924049652577496 0.0910233015743316 0.0923065995246624 0.0923107629554545 0.0914838419006503 0.0906445898663108 0.104139228794433 0.094218811283847 0.0926208732266054 4 4 + 13466573 13467385 13467057.636 13463122 13467607 + gene protein_coding_gene FALSE TRUE AT4G26700.1|AT4G26700.2|AT4G26700.3 ATFIM1 (Arabidopsis thaliana fimbrin 1); actin binding fimbrin-like protein Identical to Fimbrin 1 (AtFIM1) (FIM1) [Arabidopsis Thaliana] (GB:Q7G188;GB:O49182;GB:O49963;GB:Q9SZ12); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G35700.1); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT2G04750.1); similar to fimbrin-like protein, putative [Arabidopsis thaliana] (TAIR:AT5G55400.1); similar to Os02g0588300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047274.1); similar to Os02g0719100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047943.1); similar to fimbrin/plastin-like [Triticum aestivum] (GB:AAC49813.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calponin-like actin-binding; (InterPro:IPR001715) -0.119557441143304 -1.24431508426631 0.246984867710529 1 1.51308858165402 19.8065836869162 -0.119557441143304 0.0988524687819849
AT4G34140_at 5.40479676914807 5.54302361179493 5.84598877168212 5.24110702194259 6.57050388070107 5.38577086186669 6.09449060006532 5.6573333563565 4.62801212653771 5.87211671070201 5.03385506853458 4.89136519141887 4.77825401746363 5.15621714427106 4.46010216714531 5.04745320539498 4.85137237394114 3.98418943561238 5.43603928068656 0.245924032406321 0.240436649553562 0.247464943640461 0.237133269604428 0.249648707542115 0.266556994581632 0.248086780188322 0.24080405089264 0.258563288637126 0.237133269604428 0.240303997139667 0.237133269604428 0.239438294980969 0.253676178672597 0.241259633094303 0.243392694559541 0.249424671050337 0.247644775781952 0.242606280224928 4 4 + 16352499 16353726 16352830.364 16350736 16354258 + gene protein_coding_gene FALSE TRUE AT4G34140.1 D111/G-patch domain-containing protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G54230.1); similar to D111/G-patch [Medicago truncatula] (GB:ABE79690.1); contains InterPro domain D111/G-patch; (InterPro:IPR000467) -0.225386707064553 -1.24424461208275 0.247009514891865 1 1.51301174706558 10.7615804165854 -0.225386707064553 0.243490271813584
AT3G59980_at 7.50529664220131 7.66883255064193 7.67940470445014 7.49559977900948 7.22301334692605 7.22294170469826 8.05293453117035 7.79519114376822 7.08370341992892 7.22956836030673 7.41312719857545 8.11672708571137 7.21965466313056 7.25755369628338 8.60468626212087 6.95426143619901 7.57042755839888 7.32789418962262 6.71316381847122 0.172636739640170 0.166362177196198 0.159903292737033 0.160301482152471 0.168403733511577 0.165891866252676 0.164324284784316 0.170626216581005 0.168164088041245 0.165437346364016 0.168588701123452 0.159903292737033 0.164807914397537 0.170542848243668 0.162350310816978 0.161978065743587 0.163650865088786 0.163909198496827 0.165424312518293 3 3|0 -|/ 22165534 22166285 22165900 22165221 22166618 - gene protein_coding_gene FALSE TRUE AT3G59980.1 tRNA-binding region domain-containing protein similar to methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative [Arabidopsis thaliana] (TAIR:AT4G13780.1); similar to tRNA-binding protein (ISS) [Ostreococcus tauri] (GB:CAL52895.1); similar to Os04g0303900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052413.1); similar to OSJNBa0079M09.8 [Oryza sativa (japonica cultivar-group)] (GB:CAD40498.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Endothelial monocyte-activating polypeptide II precursor pro-EMAP II; (InterPro:IPR008232); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain t-RNA-binding region; (InterPro:IPR002547) 0.0994529059225873 1.24423126439381 0.24701418338805 1 1.51299719464043 14.8638284891037 0.0994529059225873 0.0616618568524848
AT4G34450_at 10.0194670589767 9.99792928477374 9.92312947973967 9.88175127322052 10.0926067299443 9.87638425284043 9.90360800940142 9.8709012004433 9.8031789530584 10.0094238877303 10.3598055464929 10.3000747714619 10.0305763565816 10.0469054980606 10.178037946332 10.0136683116556 9.84351568956565 10.0201534389662 9.92838102332808 0.0940576341048099 0.0898156723711688 0.0923559280931716 0.0927793641966607 0.0906056674761866 0.089300507382542 0.0900424775613628 0.0884478168636612 0.101639368196942 0.0935346836807724 0.0973512123734195 0.0884478168636612 0.0895575867212146 0.0916800678918882 0.092686365237153 0.0893734257874493 0.0966412144016596 0.0959853115453047 0.0937325929761804 4 4 + 16475912 16476765 16476343.6 16471839 16477025 + gene protein_coding_gene FALSE TRUE AT4G34450.1 coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G16200.1); similar to Adaptin N terminal re (GB:ABE87941.1); similar to PREDICTED: similar to coatomer protein gamma2-COP [Gallus gallus] (GB:XP_414981.2); similar to Putative Nonclathrin coat protein gamma - like protein [Oryza sativa (japonica cultivar-group)] (GB:AAN60990.1); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0904612261940265 1.24359549827359 0.247236634211578 1 1.51230416598146 19.9520989026318 0.0904612261940265 0.0386953968942820
AT3G51990_at 4.88274624031552 5.33668870383912 5.33175420944926 5.24009900563854 4.66280688017563 4.97283109505723 4.95047707171163 5.70565576289282 5.35938130393857 5.43831715766837 5.08716052707967 5.30598554025029 5.62278305453894 5.40473137803318 4.74846355899559 5.307438562749 5.54023629913283 5.8233400447592 5.74290148289933 0.192633414350762 0.195089908462899 0.194441986396217 0.200950246017227 0.196434641999669 0.197096390003432 0.206252072925724 0.199069534895634 0.196232107407291 0.197573972658376 0.202038067645364 0.194287005817832 0.193099819575433 0.208602145792847 0.195563706391463 0.192633414350762 0.195266410747582 0.192633414350762 0.195824580371643 3 3 + 19299470 19300024 19299791.273 19298856 19300308 + gene protein_coding_gene FALSE TRUE AT3G51990.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G28390.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV31339.1); similar to Os05g0387700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055424.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.162767545626345 -1.24320825505467 0.247372209813259 1 1.51188216000009 10.5696577138988 -0.162767545626345 0.162420289095827
AT3G13320_at 6.3551622768274 6.70299277416511 6.73393595056424 7.08240349984248 7.40422738338004 6.7106950630183 6.6018564809825 6.76219793254532 6.42897078426357 5.8373434454775 5.96743630580512 5.81692595312863 6.20324436188536 6.18858061004569 5.47302678437366 6.6909899292593 6.18339783448942 5.8168952742319 6.07189080002481 0.211285095506312 0.215703164014138 0.214548871877926 0.215223795326438 0.210102520372088 0.210144807100238 0.210455884568891 0.212322104369916 0.217443199448834 0.214031106541543 0.207371826341330 0.211284405161243 0.208526731072789 0.211117836080233 0.220444467929625 0.207371826341330 0.219587007414463 0.207516244727368 0.213473444624803 3 3|0 +|/ 4316673 4317784 4317331.556 4314536 4318358 + gene protein_coding_gene FALSE TRUE AT3G13320.1 CAX2 (CATION EXCHANGER 2); calcium:hydrogen antiporter low affinity calcium antiporter CAX2 Identical to Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger 2) (Ca(2+)/H(+) antiporter CAX2) (CAX2) [Arabidopsis Thaliana] (GB:Q39254;GB:Q944Q1;GB:Q9LTT6); similar to ATCAX6 (calcium exchanger 6), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT1G55720.1); similar to ATCAX5 (calcium exchanger 5), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT1G55730.2); similar to low affinity calcium antiporter CAX2 (GB:AAB05914.1); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium/proton exchanger superfamily; (InterPro:IPR004798) 0.153545114900804 1.24287306816250 0.247489610077453 1 1.51151695417165 12.8718324909528 0.153545114900804 0.149781000764090
AT3G61210_at 10.2517010988324 10.1490747564610 10.5351289548789 10.4452708556548 10.8980772966631 10.4109327345362 11.0991218619177 10.84409260958 10.4589552830635 10.3268015801229 9.96507093644038 9.88781209366368 10.2312792029746 10.1264009501426 9.47432859313346 10.4864430650119 10.6144424371335 10.0069914240476 10.1835855244796 0.0843246863817903 0.0817411875951265 0.0865077171335654 0.0844787780059495 0.0826890608812135 0.0881276121956388 0.0845575507835196 0.0880650892053652 0.0873446935020971 0.0823159922091592 0.0831712242711394 0.0829930400761552 0.0849639079685342 0.0879036889638755 0.0868046176655289 0.0816198222369803 0.0872698764044964 0.0831241752578734 0.0855417281078716 3 3 - 22669990 22670375 22670191.182 22669653 22670845 - gene protein_coding_gene FALSE TRUE AT3G61210.1 embryo-abundant protein-related similar to embryo-abundant protein-related [Arabidopsis thaliana] (TAIR:AT1G55450.1); similar to embryo-abundant protein EMB-like [Oryza sativa (japonica cultivar-group)] (GB:BAB89030.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.118831581334025 -1.24189097213967 0.247833858550345 1 1.510447280934 20.7902801295857 -0.118831581334025 0.0980406811712608
AT3G07720_at 7.70050411854092 7.58970221101746 8.39217355729494 8.20505974125276 6.92361662429943 7.19381698788109 7.4318525548221 7.68726338317474 7.0233461841362 7.3911041939665 7.11249738907693 6.97990672169661 7.62679065634612 7.46723352189644 6.8902823951058 7.64173014963947 7.47078922707301 6.83975599084089 6.94234113381706 0.182043419172202 0.186043696153681 0.182803093848795 0.182638362487006 0.188666235245745 0.183916899200152 0.184344204391876 0.189758446421352 0.190353029792462 0.180808185140301 0.181688874564835 0.180239015780744 0.182730579582668 0.188978123157286 0.185619976418114 0.179189272130137 0.189567880151347 0.183325373817501 0.185401492395409 3 3 + 2466476 2467015 2466714.909 2465371 2467239 + gene protein_coding_gene FALSE TRUE AT3G07720.1 kelch repeat-containing protein similar to kelch repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G48180.1); similar to putative D-protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19903.1); similar to Os09g0249000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062670.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.105514456639705 1.24140174597750 0.248005492379824 1 1.50991463913557 14.8267755275018 0.105514456639705 0.0745404857435868
AT2G39720_at 7.47565177380349 7.66558276847596 7.42545197176724 7.5189648570356 7.84827388854206 7.51021729818528 7.46337036297096 7.62898779124711 7.48403999623026 7.11713654863328 7.3104647434431 7.17242308864327 7.44992558770209 7.80477805050117 7.14412908354676 7.35200210522822 7.62332328405762 7.1201514435734 6.93409870065951 0.211738096251927 0.203119092308901 0.205844082532224 0.202643476729588 0.202035638996094 0.212800023172103 0.199427898172703 0.197950927626596 0.211176761798514 0.211622225211752 0.199828016147444 0.197996700033104 0.199512273274769 0.197950927626596 0.216551721696897 0.197950927626596 0.215852379556332 0.211846831771483 0.20754782505205 2 2 - 16574621 16575127 16574914.909 16574287 16575900 - gene protein_coding_gene FALSE TRUE AT2G39720.1 RHC2A (RING-H2 finger C2A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHC2a. similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G59550.1); similar to putative RING-H2 finger protein [Oryza sativa] (GB:AAK73147.1); contains InterPro domain Protein of unknown function DUF1117; (InterPro:IPR010543); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.105526710627051 1.24032433379672 0.248383825538094 1 1.50874210767466 14.8423499665924 0.105526710627051 0.0747407512869984
AT3G16290_at 7.69233068535855 7.50049859666456 7.27905251109253 6.87834935359164 7.64092639294195 7.36251711394426 7.77194619310186 7.15985152440884 7.4888814103978 7.80469100134728 7.71668831153252 7.7463060141108 7.33267859036904 7.33102095549841 8.1204223237167 7.77181353335283 7.66727147144183 7.72276401168589 7.88682731171274 0.140266547160277 0.138663458731586 0.137725906604967 0.142610730340435 0.138854675776122 0.139894140399703 0.138356005076091 0.137336718735720 0.148040364543196 0.139531026004079 0.142057854708704 0.132919723372808 0.135964925151176 0.132997895405759 0.145891658651067 0.143975345479922 0.149047020077196 0.1476387219364 0.138459812537074 3 0|3 /|- 5521205 5521898 5521546.1 5521077 5525001 - gene protein_coding_gene FALSE TRUE AT3G16290.1 EMB2083 (EMBRYO DEFECTIVE 2083); ATPase/ metallopeptidase similar to VAR1 (VARIEGATED 1), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G42270.1); similar to Peptidase M41; Ribosomal protein S19/S15; DNA repair protein RadA; L-Aspartase-like [Medicago truncatula] (GB:ABE80934.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.145812331673314 -1.23935035123042 0.248726251186727 1 1.50768272237948 15.1121443260294 -0.145812331673314 0.139471127899295
AT1G28490_at 7.0895561723174 7.15158153058802 7.0223949020652 6.59614336888047 7.4875881733086 6.48521405182635 7.38158377188301 7.08886305253824 6.57702809758874 7.10206901361557 7.14787610322469 7.29119073336183 6.65036670805883 6.8633800409915 6.46360828457184 7.23446306633529 6.40383797776887 6.45364013771285 7.04359361147178 0.220143629051304 0.213877758545715 0.233003952448932 0.226937266889234 0.215475254155287 0.23120128066876 0.225858484774424 0.220881501521864 0.238187524914363 0.213877758545715 0.217839811067889 0.227024505769487 0.228385665690613 0.22564975204235 0.233482369338612 0.213877758545715 0.242444334999904 0.224400128064154 0.224935130926556 1 1|0 +|/ 10016867 10017803 10017299.667 10015905 10018033 + gene protein_coding_gene FALSE TRUE AT1G28490.1|AT1G28490.2 SYP61 (SYNTAXIN OF PLANTS 61) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. Identical to Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1) (SYP61) [Arabidopsis Thaliana] (GB:Q946Y7;GB:Q8VYF3;GB:Q9SGP7); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to SNARE domain, putative [Medicago truncatula] (GB:ABE91641.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012)|Identical to Syntaxin-61 (AtSYP61) (Osmotic stress-sensitive mutant 1) (SYP61) [Arabidopsis Thaliana] (GB:Q946Y7;GB:Q8VYF3;GB:Q9SGP7); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to SNARE domain, putative [Medicago truncatula] (GB:ABE91641.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) -0.187039600266832 -1.23933926081838 0.248730152525008 1 1.50767066271755 13.8984201057902 -0.187039600266832 0.195481066298382
AT4G04470_at 8.3839042906468 8.56507782586945 8.95420287535747 8.93080798780397 9.1013704058232 8.6109827439421 8.41195299907784 8.64699949497198 8.12822619384991 8.17028069821085 7.51461138780607 7.84095248009302 8.09749301888055 8.0530309973087 7.27504066784163 7.90962824602 8.07604356131094 8.18409276506609 7.78464305432844 0.164610529456900 0.163917755705646 0.165882873976090 0.179546915004049 0.167846049473805 0.163185397281695 0.169626695929219 0.166784686033932 0.182884983145704 0.169799283544570 0.169946342190436 0.17365032369623 0.165703277499559 0.169623133029857 0.183705196507345 0.173578257168113 0.182398232105528 0.174262178602179 0.168410025593360 4 4|0 -|/ 2227989 2229177 2228615.778 2227659 2229278 - gene protein_coding_gene FALSE TRUE AT4G04470.1 PMP22 (peroxisomal membrane protein 22) 22-kD peroxisomal membrane protein, an integral membrane protein embedded in the lipid bilayer. Identical to Peroxisomal membrane protein PMP22 (22 kDa peroxisomal membrane protein) (PMP22) [Arabidopsis Thaliana] (GB:Q9ZS51); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14305.1); similar to Os08g0566900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062544.1); similar to Os02g0226000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046343.1); similar to hypothetical protein DDBDRAFT_0188787 [Dictyostelium discoideum AX4] (GB:XP_635840.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.119251171167325 1.23844749476406 0.249044020289808 1 1.50670119664211 16.6489514726052 0.119251171167325 0.0992763920493282
AT4G00270_at 5.7250276175318 5.6069103970587 5.67098431690848 5.66985678279636 5.93360549038043 5.76418958969819 5.66697440811679 5.29075997812978 5.52788684098456 5.2743320827912 5.309904459873 5.37548524897964 5.36874831064686 5.72913914020889 5.38105370583049 5.43508102985939 5.44373435102756 5.68856432145852 5.52842180072293 0.165327394182660 0.171484917713662 0.161949606249272 0.163499347997905 0.179620019554638 0.166934077710179 0.170578803032884 0.170057342942694 0.163495676617321 0.171634505620525 0.166021095694017 0.166998912760073 0.161949606249272 0.163455641999656 0.162421942337975 0.170277245621287 0.171334736799843 0.161949606249272 0.168004438561216 4 4 - 117645 118040 117856.182 117152 118577 - gene protein_coding_gene FALSE TRUE AT4G00270.1 DNA-binding storekeeper protein-related similar to DNA-binding storekeeper protein-related [Arabidopsis thaliana] (TAIR:AT2G25650.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.105078928777957 1.23791561907800 0.249231376549568 1 1.5061232005447 11.1210439371535 0.105078928777957 0.0742708992956482
AT1G09740_at 6.77320071612467 6.38416817517827 6.87015394582005 6.38540836292976 6.20239831888457 6.09473452026196 6.19269539945715 5.63080495066543 5.10330651536036 5.25907578514368 5.14315369889506 4.2888194244673 4.34708361193321 5.07033920734118 4.87053537694696 4.0426379028465 4.40471633567646 5.21928801299654 4.98729395464449 0.219131363457494 0.218299822339135 0.212581262806918 0.209670016361418 0.212537956311641 0.220461419706244 0.207720543908219 0.210808499662118 0.210566933801415 0.209548634294391 0.207720543908219 0.212220130031231 0.226981373436853 0.211917742499837 0.234785007169951 0.213978274346096 0.228592966413685 0.229981984143894 0.219453168621742 1 1|0 +|/ 3154629 3155783 3155032 3154534 3156275 + gene protein_coding_gene FALSE TRUE AT1G09740.1 ethylene-responsive protein, putative similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G11930.1); similar to ER6 protein [Lycopersicon esculentum] (GB:AAD46412.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) -0.150140289355289 -1.23597196126084 0.249917034591772 1 1.50401241613902 11.2116357727173 -0.150140289355289 0.146191451352798
AT1G65840_at 5.3293329910197 5.70217848236059 5.95658311211478 6.12554586394832 4.99238071148943 5.14341261212313 6.44716526153665 6.38103734665597 5.7626383707802 5.60664977670667 5.83963857709476 6.66328125421564 5.93289845425573 6.09596612963173 6.28167549470806 6.11354830340992 5.53090796262457 5.85606566441511 6.15304490225078 0.188405826849966 0.193912403309918 0.186732623727732 0.189766957985160 0.200981766970103 0.194213518600973 0.190604703086837 0.188990491836164 0.205473874989126 0.198147120705642 0.186732623727732 0.186732623727732 0.191864304554309 0.200263882755222 0.198516307956683 0.194748614693460 0.197192659376647 0.191075691515274 0.188079067265809 1 1|0 +|/ 24495713 24496367 24496132.5 24493443 24496687 + gene protein_coding_gene FALSE TRUE AT1G65840.1 ATPAO4 (POLYAMINE OXIDASE 4); amine oxidase similar to ATPAO2 (POLYAMINE OXIDASE 2), amine oxidase [Arabidopsis thaliana] (TAIR:AT2G43020.1); similar to H0215F08.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66792.1); similar to OSJNBb0004A17.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE03599.2); similar to Os04g0671300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054219.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.105988949337877 -1.23579513299167 0.249979491201963 1 1.50382049341834 11.6997172543012 -0.105988949337877 0.0763690266799881
AT1G64940_at 4.55131674264989 4.40024678156003 5.13476409387601 4.67248028875452 4.04550635394481 4.63255647306793 4.40461512200782 4.49574161587893 4.80799686736693 4.81180473733894 5.02732429855788 4.77809554519213 4.84359303056111 4.87663509169703 5.42357925724566 4.79231328689747 5.28874720959918 4.93991099040525 4.99918713456704 0.15655196899513 0.157548852431296 0.159297591276918 0.15709017204283 0.162474713838668 0.155539737889396 0.158120399322311 0.152772726287228 0.158107077158884 0.153873744902827 0.154002181183010 0.154888777987148 0.160358584994510 0.154438298403396 0.159956974855947 0.156778710492250 0.164014431059318 0.159873394317813 0.158940701229832 1 1 + 24128452 24128872 24128562.818 24127452 24128987 + gene protein_coding_gene FALSE TRUE AT1G64940.1 CYP89A6 (cytochrome P450, family 87, subfamily A, polypeptide 6); oxygen binding member of CYP89A similar to cytochrome P450, putative [Arabidopsis thaliana] (TAIR:AT2G12190.1); similar to CYP89A5 (cytochrome P450, family 87, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64950.1); similar to CYP89A7 (cytochrome P450, family 87, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G64930.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96947.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.140812664615908 1.23570938131228 0.250009783768398 1 1.50372742841047 9.47678897656438 0.140812664615908 0.132865002303927
AT1G69760_at 6.63952901656067 7.24456438250917 6.15774906737911 6.62769511163507 7.20369151602945 7.13610917079586 6.95631671930632 7.69560913139828 5.69758804336007 6.52879963021282 6.22919831821233 6.04450471752495 6.03833797028559 6.31148764753124 5.57097728695555 6.97154363943747 6.45437528327006 5.40527497272105 6.16959327728176 0.232488439968934 0.227844975829982 0.241973161424249 0.229849924161335 0.232963747373558 0.234017389470429 0.227844975829982 0.234498298597579 0.255050129748843 0.234524769916499 0.239528843126933 0.232917575549498 0.235489763534500 0.236385899850729 0.239913844114638 0.22823852333784 0.232864320051796 0.23554427327410 0.242667288931782 1 1 - 26243801 26244156 26243976 26242923 26244371 - gene protein_coding_gene FALSE TRUE AT1G69760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26920.1); similar to hypothetical protein [Ricinus communis] (GB:CAH56540.1) -0.178237383388166 -1.23558146282546 0.250054977795160 1 1.50358860844269 13.0877610793403 -0.178237383388166 0.184612726748945
AT3G61550_at 5.67707179746559 6.89369867192711 5.74656123976585 5.92993380699508 6.9472816317394 7.40633313956607 6.0462175202352 7.86095178615848 8.0951834120492 6.75940938194628 9.17937003527468 8.84905002234227 8.80390533330233 8.62418080828271 7.5969259746325 8.12095909774714 6.91804573328815 8.19551209678942 7.62252103811994 0.256321334528083 0.24466645551935 0.247690214378874 0.246900884526396 0.243498683885151 0.245026419573924 0.259783620741152 0.244769926328675 0.251290458921920 0.250943459405527 0.241870628614928 0.244582433256658 0.24613694602713 0.253783987144296 0.244421994554884 0.248821748634566 0.24897872990144 0.244362428106451 0.24358594694082 3 3 + 22787472 22788019 22787798.182 22787376 22788200 + gene protein_coding_gene FALSE TRUE AT3G61550.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL3K (ATL3K) [Arabidopsis Thaliana] (GB:Q9M313); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G46160.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABD28581.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.340832435452799 1.23516786675804 0.250201148958482 1 1.5031398307643 14.4526886567712 0.340832435452799 0.387649986824742
AT1G65650_at 7.33335615527789 7.22383120908486 7.33456085111452 7.19875525353096 7.34738261881536 7.47632755403246 7.165310611555 7.00946842529046 6.5243863862601 6.29073186884434 6.50825313573761 6.37567947064352 6.09184265579241 6.3497136662396 6.82555612181217 6.45254525843292 6.71564853501017 6.08379955434534 6.37579499842352 0.190994729547503 0.190606865937663 0.188425968599677 0.189928941656111 0.198067931342512 0.193925827466918 0.192988711720538 0.191679008579231 0.205460382875819 0.199865804799462 0.203308934150340 0.18787502165175 0.190629682633226 0.200505795594718 0.198066032015352 0.190431488046222 0.199703951054387 0.192777280911963 0.193844600999192 1 1 - 24418897 24419400 24419154.364 24418678 24421372 - gene protein_coding_gene FALSE TRUE AT1G65650.1 ubiquitin carboxyl-terminal hydrolase family 1 protein similar to ubiquitin carboxyl-terminal hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G16310.1); similar to ubitquitin C-terminal hydrolase [Chlamydomonas reinhardtii] (GB:AAT02518.1); similar to Os02g0180100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046089.1); similar to Os02g0822200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048557.1); contains InterPro domain Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1; (InterPro:IPR001578) 0.0923368421568336 1.23435332789263 0.250489226272548 1 1.50225629951862 13.6722995269682 0.0923368421568336 0.0462261554914015
AT4G14070_at 8.93844535620178 8.95433827620432 9.2345975539381 9.13548972354391 9.5785930580231 8.95003213594324 9.2994681961365 8.85495647401985 9.0431020733291 9.03880790076048 9.23082069192371 8.89202932821502 8.75723397919673 9.05122205259677 8.90661219078362 9.14457508586032 9.1694214241618 8.77776854220726 8.68026453708371 0.132101835202352 0.130742098010287 0.127593850993537 0.127593850993537 0.130557704179058 0.146023427572943 0.133893015806867 0.133930589856031 0.131487867904191 0.133261620403190 0.129269207758935 0.130473506012448 0.142983148410436 0.132921939689479 0.143521658997845 0.136216719355031 0.135333754747978 0.135877498148189 0.134804045362406 4 4|0 -|/ 8112315 8113205 8112730.444 8111957 8118155 - gene protein_coding_gene FALSE TRUE AT4G14070.1 AAE15 (ACYL-ACTIVATING ENZYME 15); acyl-ACP synthetase Plastidic acyl activating enzyme involved in the elongation of exogenous medium-chain fatty acids to 16- and 18-carbon fatty acids. similar to AMP-binding protein, putative [Arabidopsis thaliana] (TAIR:AT3G23790.1); similar to AMP-binding protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99869.1); similar to AMP-binding protein [Brassica napus] (GB:CAA96521.1); similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE90455.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.141680808515934 1.23434886610048 0.25049080502681 1 1.50225146088380 18.0742077212143 0.141680808515934 0.134354903384724
AT1G54780_at 12.8425130040063 13.1406117942654 13.0524154126270 13.0984204342338 12.9122281401627 12.8869625572814 13.2502597285008 13.6000302119296 13.8661927265095 13.7689964313798 13.9494927879807 13.8395479937079 13.8059419644933 13.9253382605622 13.7034898003530 13.8966209815090 13.1888177180787 13.8216065186008 13.6482409928725 0.0713910087263432 0.0729441252658187 0.0723633754012247 0.0767505547220017 0.0711011104124555 0.0759125178419015 0.0728009843975385 0.0724145619841253 0.0821462968031095 0.0727475047086397 0.0707893329501759 0.0722363482493947 0.0715679056658202 0.0735030601710396 0.0725413593897679 0.0707893329501759 0.0828118556587305 0.0780351738426171 0.0732597479759484 1 1|0 +|/ 20443463 20444587 20443978.375 20443101 20444826 + gene protein_coding_gene FALSE TRUE AT1G54780.1 thylakoid lumen 18.3 kDa protein similar to Os05g0401100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055486.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57312.1); contains InterPro domain Protein of unknown function DUF477; (InterPro:IPR007621) -0.107816714512952 -1.23432760730096 0.250498327323653 1 1.50222840672857 26.8616803537499 -0.107816714512952 0.0800472931908587
AT3G11830_at 7.34899427185537 8.44643143709176 7.11620057385492 7.53368557309036 8.10332990043491 8.25460534323142 7.7222617882027 8.1761518013035 7.66379192029652 7.45605941626335 7.28428384853856 7.4560509674651 7.28490121875436 7.47781313573621 7.39199845854111 7.0845292960371 7.23121687162203 7.20446835560768 7.49933883868976 0.203801632184107 0.204119091961393 0.207141103470214 0.202487919774717 0.203877670800517 0.206316463173511 0.205023868194312 0.206513689023564 0.217878420815722 0.199500400581816 0.202384600003108 0.205512716433357 0.201665487332583 0.208527374714301 0.199500400581816 0.210056985902621 0.221689030891611 0.208924893387113 0.207167920761731 3 3|0 +|/ 3734861 3736132 3735656.889 3732667 3736380 + gene protein_coding_gene FALSE TRUE AT3G11830.1 chaperonin, putative similar to ATTCP-1 (Arabidopsis thaliana T-complex protein 1 alpha subunit), ATP binding / protein binding / unfolded protein binding [Arabidopsis thaliana] (TAIR:AT3G20050.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus tauri] (GB:CAL57442.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG05730.1); similar to putative t-complex protein 1 theta chain [Oryza sativa (japonica cultivar-group)] (GB:BAD45605.1); contains InterPro domain T-complex protein 1, eta subunit; (InterPro:IPR012720); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844) -0.204663383169603 -1.23404053676225 0.250599923797448 1 1.50191711848529 15.2585264998603 -0.204663383169603 0.21941546568779
AT3G02660_at 4.98008800979238 5.96970961168936 4.57886824242127 4.50101786105534 5.79429134345344 4.45166791145422 6.38146580049608 5.89621887720462 4.73456185822185 5.38004926054955 5.4058850844613 6.03346572513856 5.34417618681309 5.51402630942848 6.69351531158782 5.64618137962968 4.55709148673562 5.12697668573976 5.19575978698304 0.264273889403891 0.260647999139216 0.260544459483502 0.271883635745657 0.265900594092848 0.28228428977188 0.260544459483502 0.269728576927482 0.294207240452515 0.271695096895878 0.264343295765952 0.264368131753118 0.262220048917387 0.266571305959806 0.275187086956095 0.260544459483502 0.288699989958845 0.270956380538169 0.269401950792652 3 3 - 570261 570770 570612.818 570141 572352 - gene protein_coding_gene FALSE TRUE AT3G02660.1 tRNA synthetase class I (W and Y) family protein similar to Os01g0500900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043131.1); similar to Tyrosyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL52305.1); contains InterPro domain Tyrosyl-tRNA synthetase, class Ib; (InterPro:IPR002307); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Aminoacyl-tRNA synthetase, class Ib; (InterPro:IPR002305) -0.269350716296282 -1.23326992781507 0.250872816885175 1 1.50108174002876 10.6409768270841 -0.269350716296282 0.300911849095783
AT3G17790_at 8.20069488278474 8.76784891428522 8.30165278623499 8.66776215920799 7.6912836996385 7.25693902141415 7.0996826947109 7.2520161145982 3.56173297326981 4.91330192449378 1.85660422609295 3.36317913800631 4.23809737126632 3.34610808293702 2.27044127556725 4.55149021024524 5.74980825825964 3.24625348328255 3.58446419406240 0.330673042506488 0.331128269601876 0.335053001665148 0.337613762352964 0.327505439155187 0.335764238277833 0.339887684437887 0.334904188085337 0.339309003255521 0.334900499996141 0.333952098583074 0.327505439155187 0.327505439155187 0.330521318121471 0.331304167334326 0.327505439155187 0.331897464257497 0.336266127850925 0.332480596457985 3 3 + 6090405 6090964 6090701.091 6089612 6091237 + gene protein_coding_gene FALSE TRUE AT3G17790.1 ATACP5 (acid phosphatase 5); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP3/PAP3 (purple acid phosphatase 3), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G14700.1); similar to putative acid phosphatase [Lupinus luteus] (GB:CAE85073.1); contains InterPro domain Acid phosphatase, type 5; (InterPro:IPR012007); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.146368254936179 -1.23268056554961 0.25108169161255 1 1.50044307835496 11.7035254272672 -0.146368254936179 0.141393236698966
AT1G44446_at 10.9311952797553 10.9797521053587 10.9801796889177 10.9578121633700 11.2225040131299 11.0936543715071 12.0674609498545 11.7513045506158 11.5502738224625 11.5292769045989 11.8681212156052 11.9379822885702 11.6043528029210 11.4314085858790 11.7162749490395 11.8132488876610 11.5511700878054 11.565172742657 11.4568281323564 0.0802120641534025 0.079022514001966 0.078924026496421 0.0778004343809853 0.0769756257036071 0.0790776058896917 0.0780742448560082 0.0808236094811042 0.0840336410358327 0.0791902851122351 0.0797391952708338 0.0784280069531808 0.0773972683590347 0.0796918061430143 0.0813241989939252 0.0776424528654852 0.0803960527655177 0.0797001070829874 0.0806094387183808 1 1|0 -|/ 16851107 16851809 16851527.2 16850799 16853664 - gene protein_coding_gene FALSE TRUE AT1G44446.1|AT1G44446.2|AT1G44446.3 CH1 (CHLORINA 1); chlorophyll a oxygenase Encodes chlorophyllide a oxygenase which converts chlorophyllide a to chlorophyllide b by catalyzing two successive hydroxylations at the 7-methyl group of chlorophyllide a . Mutants are deficient in pigments that associate with thylakoid membrane proteins, lacking chlorophyll b and light-harvesting proteins of photosystem II. The protein was shown through cross-linking experiments to interact with Toc75, Toc34, Tic40, Tic20 and Tic22. Identical to Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) (AtCAO) (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to LLS1 protein [Oryza sativa] (GB:AAG03051.1); similar to chlorophyll synthase [Phyllostachys pubescens] (GB:ABC02752.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806)|Identical to Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) (AtCAO) (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to LLS1 protein [Oryza sativa] (GB:AAG03051.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP55073.2); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806)|Identical to Chlorophyllide a oxygenase, chloroplast precursor (EC 1.13.12.14) (Chlorophyll a oxygenase) (Chlorophyll b synthase) (AtCAO) (CAO) [Arabidopsis Thaliana] (GB:Q9MBA1;GB:Q3ECX2;GB:Q3ECX3;GB:Q9SPF2;GB:Q9XJ37); similar to TIC55 (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 55), oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G24820.1); similar to LLS1 protein [Oryza sativa] (GB:AAG03051.1); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP55073.2); similar to chlorophyll a oxygenase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48003.2); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.097525251810117 -1.23052115186657 0.251848234673713 1 1.49810478477723 22.8470292560586 -0.097525251810117 0.0598016352034203
AT1G08750_at 5.79129632791704 6.49480993876012 5.78151788098812 6.20711109383979 6.5139887213661 6.26205191532113 6.78510088988549 6.24148516353904 4.34824314941188 4.504978864591 5.39634247042889 5.5600391627308 4.94185274422807 4.86718412758905 4.98631493148934 5.51519584734915 5.71000929448969 4.44441101780539 5.24210435624504 0.250256696814629 0.250810474294139 0.254152717114435 0.246911960977766 0.246911960977766 0.252254607020639 0.246911960977766 0.247347041749502 0.256098032536860 0.249718904895363 0.251380287139061 0.255879485118332 0.253941024438808 0.255436641599891 0.249137905891483 0.249561320258934 0.246911960977766 0.252782337372960 0.246985527327825 1 0|1 /|+ 2803018 2804369 2803639.556 2801070 2804540 + gene protein_coding_gene FALSE TRUE AT1G08750.1|AT1G08750.2|AT1G08750.3 GPI-anchor transamidase, putative similar to ALPHA-VPE (ALPHA-VACUOLAR PROCESSING ENZYME), cysteine-type endopeptidase [Arabidopsis thaliana] (TAIR:AT2G25940.1); similar to hypothetical protein DDBDRAFT_0186511 [Dictyostelium discoideum AX4] (GB:XP_638069.1); similar to Os02g0219400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046312.1); contains InterPro domain Peptidase C13, legumain; (InterPro:IPR001096) 0.171110449475593 1.230394118856 0.251893388719111 1 1.49796731452584 11.197725652917 0.171110449475593 0.176061429486148
AT3G24010_at 7.67204714956035 7.66217383788122 7.6412743844294 7.51450047751536 7.78070665810337 7.89911900692574 7.59096898535829 7.58441399520071 7.18495342416234 7.47294048714486 7.40563597325986 7.16163251839677 7.37003996116715 7.27763927663099 6.88994728363374 7.37714812604686 7.37081014838407 6.87509990871596 7.75707731993779 0.175317677201483 0.174279374567311 0.174037292269637 0.174803434337207 0.177877135256103 0.185169427742845 0.186637981643750 0.169325059115450 0.178496922913783 0.180330189373516 0.178257884298691 0.175734698791170 0.169325059115450 0.171515203800295 0.178612475305890 0.169325059115450 0.176057928939250 0.193318994680950 0.172186249291277 3 3 - 8676151 8677095 8676531.727 8675965 8678227 - gene protein_coding_gene FALSE TRUE AT3G24010.1 PHD finger family protein similar to PHD finger protein-related [Arabidopsis thaliana] (TAIR:AT1G54390.3); similar to hypothetical protein LOC322113 [Danio rerio] (GB:NP_001018304.1); similar to Os03g0143600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048939.1); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0870818939044586 -1.23035947270354 0.251905704899606 1 1.49792982344496 15.0119761751773 -0.0870818939044586 0.0300903983978468
AT4G01280_at 5.80990994841504 5.85797839874884 6.31214866344126 6.56629875087146 6.64014845241267 6.76935229530709 7.09405791154165 7.16463748720211 5.15900429681155 5.66118671747473 5.19980772993039 5.17829499788794 5.70663014081286 5.50095489218022 5.1083744792606 6.16608389314935 6.29172909463497 5.87485441713064 5.77187751413089 0.253627527504958 0.238606447163714 0.239811455477244 0.248380798954058 0.248699629094747 0.242952942670496 0.253407451714249 0.238007490629334 0.249364149945677 0.243195392701314 0.246113080895712 0.243253338662124 0.243505251265539 0.238007490629334 0.244810443251732 0.238007490629334 0.24426475074538 0.247295999252366 0.244168118592494 4 4|0 +|/ 535792 536680 536175.4 535211 537320 + gene protein_coding_gene FALSE TRUE AT4G01280.1|AT4G01280.2 myb family transcription factor|DNA binding / transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G01520.1); similar to MYB transcription factor MYB133 [Glycine max] (GB:ABH02857.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0939964000910951 1.22983197965319 0.252093282152318 1 1.49735910361923 12.1063318460404 0.0939964000910951 0.0515046127672215
AT3G18165_at 7.6052165784246 7.7568284612452 7.31414563108493 7.33041830800195 7.52701254036725 7.15728546486533 7.45857493051948 7.77588415859209 6.52451671081714 7.00036282857287 7.06414088994865 7.32283100843063 7.17274147070907 7.0587139084759 7.31166440378405 6.7683509442162 6.85392530127407 6.43573295875553 7.19179391937653 0.202604191344755 0.204746327659257 0.208543221630835 0.207470779436736 0.199938747041215 0.205851355936734 0.207902909758419 0.204439693928421 0.211882168949431 0.200784953655996 0.211412798829332 0.201846304207562 0.202562415192165 0.203178602930701 0.203529768969916 0.20766126025672 0.210165043174845 0.206387541783597 0.204993364650185 3 3 + 6223419 6225053 6224263.636 6223194 6225378 + gene protein_coding_gene FALSE TRUE AT3G18165.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81183.1); contains InterPro domain Breast carcinoma amplified sequence 2; (InterPro:IPR008409) -0.111977877502531 -1.22945131689426 0.252228718056007 1 1.49694734874745 14.4427059742817 -0.111977877502531 0.088348468516624
AT4G31580_at 8.45325693623412 8.44836732834303 8.54451266137758 8.48705445136219 8.69717988700172 8.43988368936235 8.7534016674986 8.74372910470113 7.65664328822039 7.8006861102309 7.78544895527231 8.06356714546636 8.08913163586413 7.91857267057434 8.28647662609344 7.53882052077259 7.88436502504746 7.54763823110267 7.48805785954288 0.176968908696805 0.172291929805350 0.180263510705735 0.176865037012177 0.165722527247093 0.170633935735961 0.166916190569325 0.173187671218565 0.180150029528549 0.174049646000295 0.165506633257176 0.170508359084586 0.17017124404851 0.180338344853576 0.167617978510868 0.166120189044260 0.182216825285810 0.175730579751081 0.170296550652033 4 4|0 +|/ 15307014 15307844 15307419.4 15306660 15308353 + gene protein_coding_gene FALSE TRUE AT4G31580.1|AT4G31580.2 SRZ-22 (serine/arginine-rich 22) 9G8-like serine-arginine rich (SR) protein interacting partner to the Arabidopsis U1-70K similar to splicing factor, putative [Arabidopsis thaliana] (TAIR:AT2G24590.1); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84871.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0916295475122539 1.22761111212946 0.252884292176353 1 1.49495804824441 16.3397807260379 0.0916295475122539 0.0456615957249713
AT3G22530_at 7.98779571052833 8.48473819982189 8.64569771382627 8.6883829179475 8.78525075454494 8.38885797699932 9.23717785937671 9.16000100066444 8.17003736517504 8.51614316819024 7.95463376483768 8.27554005325043 8.3670730390889 8.12351317065104 8.12381073284975 8.70015254261438 8.25247179041164 7.86758953997106 8.41955200050298 0.177073168185021 0.169385981692805 0.172438442564907 0.172244422706982 0.173748517623444 0.175651141111439 0.182485576025500 0.172611399930433 0.191894004946790 0.179034673422286 0.182084469213846 0.176537907571504 0.172035935221656 0.185561047313973 0.177741530319482 0.170888002649813 0.183985330622184 0.176655306186730 0.179850762154218 3 3 - 7977859 7978331 7978074.818 7977611 7978642 - gene protein_coding_gene FALSE TRUE AT3G22530.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14830.1); similar to HSP20-like chaperone [Medicago truncatula] (GB:ABE82966.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) -0.125430141924197 -1.22686526562867 0.25315040098963 1 1.49415234397400 16.9605755619631 -0.125430141924197 0.111059759018917
AT3G44590_at 7.1944222992332 7.38803386207263 7.12121270516126 7.2461325452003 6.86503521589768 7.06254817075523 7.21798103113314 7.71218385025268 7.01223596822923 6.79268803261821 7.31564121566668 7.88114830362095 7.23187348257057 7.08875716453693 8.05507842274275 7.24617397668062 7.35078160993015 7.0019400484391 6.75887005556992 0.177857769033244 0.169206831670354 0.165588548555331 0.170736735356481 0.165588548555331 0.170041717276484 0.166128061147212 0.170203144489045 0.176773116094462 0.17512413426342 0.168064011544556 0.168114104642925 0.171626006603414 0.174487736452729 0.165588548555331 0.167636685348023 0.166732706978693 0.175772429507502 0.171145438482259 3 3|0 +|/ 16175003 16175620 16175347.111 16174804 16175918 + gene protein_coding_gene FALSE TRUE AT3G44590.1|AT3G44590.2 60S acidic ribosomal protein P2 (RPP2D) Identical to 60S acidic ribosomal protein P2-4 (RPP2D) [Arabidopsis Thaliana] (GB:Q9LXM8); similar to 60S acidic ribosomal protein P2 (RPP2A) [Arabidopsis thaliana] (TAIR:AT2G27720.1); similar to 60s acidic ribosomal protein [Prunus dulcis] (GB:AAL91663.1); contains InterPro domain Putative DNA binding; (InterPro:IPR009061); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) 0.118701578899196 1.22593227606126 0.253483605619910 1 1.49314494225682 14.3514548583779 0.118701578899196 0.100362484571834
AT2G40316_at 5.26414987155801 5.54046047101332 5.34951258785045 5.14144408660197 5.85365540604902 5.69460907881527 6.02274475865707 5.94323585750824 5.0242699377176 5.12976933865249 5.14051254097256 5.12278236801521 5.16384252150774 4.98560585034114 4.77352947132325 5.32160194517232 5.19167079967234 5.08264724321831 5.19417865467662 0.185129902563260 0.184004270639494 0.187117707643253 0.189637644989357 0.184787262625041 0.189322853593799 0.188467281526449 0.190620121850485 0.191866478522779 0.183437208305275 0.187925288256571 0.185020380484567 0.188234501645614 0.188454130699148 0.192668936429334 0.185283055612037 0.184876139164832 0.18773087636662 0.186473429874038 2 2|0 +|/ 16843449 16845561 16844505.375 16843288 16846267 + gene protein_coding_gene FALSE TRUE AT2G40316.1|AT2G40316.2 similar to Os03g0296700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049832.1); similar to PREDICTED: hypothetical protein [Tribolium castaneum] (GB:XP_973862.1)|similar to Os03g0296700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049832.1); similar to PREDICTED: hypothetical protein [Tribolium castaneum] (GB:XP_973862.1); contains domain FAMILY NOT NAMED (PTHR15380); contains domain gb def: Hypothetical protein (PTHR15380:SF3) -0.100570500504681 -1.22541898122334 0.253667076274046 1 1.49259092914898 10.7081498828617 -0.100570500504681 0.0673041265633556
AT1G76340_at 4.79947442792152 4.93522890958621 4.96105559258014 5.17311206927908 5.72559915989038 4.89014922393383 5.62872369898338 5.31822918192194 5.33131216341594 4.77970734271877 5.4528842026095 5.6565541562398 5.07750411906958 5.55769788307739 5.78212651228188 5.1552840082134 5.15754745625768 5.53733721031595 5.25372831344604 0.245409118603372 0.250978802396420 0.23629417209106 0.245477976783029 0.236896469412673 0.248651257883193 0.241060521601724 0.23741294725798 0.259037094167083 0.238520957761948 0.244748166401911 0.23629417209106 0.240259668618325 0.241273066582451 0.238387150628545 0.23629417209106 0.257878675222131 0.249391050144965 0.241743772626292 1 1 - 28640222 28640642 28640432.455 28639849 28641200 - gene protein_coding_gene FALSE TRUE AT1G76340.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT5G19980.1); similar to Os03g0215000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049374.1); similar to integral membrane family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94634.1); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132:SF11) 0.158799646899413 1.22472504144565 0.253915290377604 1 1.49184218994248 10.4507963080296 0.158799646899413 0.160277085074535
AT4G02600_at 7.51543556719237 7.3698958358342 7.56349302067386 7.78461058553097 8.04229528988677 7.3780777497362 7.85375227695353 7.71356025313628 7.35394504861525 7.38488341150175 7.33101938568215 7.37055034662096 7.64958770098461 7.72414486942058 7.3395361293971 7.74879918058831 7.53309648427385 7.28896927843854 7.18276934387632 0.157507783820947 0.150670521317889 0.153219786125671 0.1509238639616 0.152182898192714 0.148174996687627 0.148225632997982 0.156618657928869 0.155615690308350 0.158784405054199 0.148174996687627 0.158172267895750 0.150251702296959 0.161735086203378 0.157912246953122 0.150949812537206 0.154119298386142 0.150763928774381 0.152990414037142 4 4|0 +|/ 1146378 1146999 1146623.556 1143962 1147422 + gene protein_coding_gene FALSE TRUE AT4G02600.1|AT4G02600.2 ATMLO1/MLO1 (MILDEW RESISTANCE LOCUS O 1); calmodulin binding A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO1 belongs to the clade II, with ATMLO13 and ATMLO15. The gene is expressed during early seedling growth, in root and cotyledon vascular system, in pollen and in papillae, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). Identical to MLO-like protein 1 (AtMlo1) (MLO protein homolog 1) (AtMLO-H1) (MLO1) [Arabidopsis Thaliana] (GB:O49621;GB:O22766); similar to MLO15 (MILDEW RESISTANCE LOCUS O 15), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G44110.2); similar to seven transmembrane protein Mlo8 [Zea mays] (GB:AAK38344.1); contains InterPro domain Mlo-related protein; (InterPro:IPR004326) 0.134985916052923 1.22460410487910 0.253958568467571 1 1.49171173248119 15.0553461673298 0.134985916052923 0.126094227884210
AT1G48850_at 9.1126632825369 9.21462648436849 9.51469686336974 9.40121786732166 9.02034591804554 8.6481300776744 9.7497688175767 9.56370556555277 9.11523907484333 9.09871592632933 9.1930451977903 9.48832222094866 8.7937639058492 9.20339323889483 9.25744026788559 9.13495234922858 8.72018186793804 8.97418590638706 8.91177682160719 0.104788757745667 0.100126177801266 0.105128945517390 0.102950304934305 0.106053908303649 0.114466357625789 0.100126177801266 0.101832892838610 0.104106610267124 0.103833884548947 0.101755031366537 0.101076525411016 0.103391797331404 0.105319749524836 0.103023064373814 0.104438753825078 0.107522937353989 0.102715988803965 0.103251562431638 1 1|0 -|/ 18068842 18069760 18069215.7 18068573 18071758 - gene protein_coding_gene FALSE TRUE AT1G48850.1|AT1G48850.2|AT1G48850.3 EMB1144 (EMBRYO DEFECTIVE 1144); chorismate synthase Identical to Chorismate synthase, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase) [Arabidopsis Thaliana] (GB:P57720;GB:Q570J9;GB:Q93ZI3); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative [Arabidopsis thaliana] (TAIR:AT1G48860.1); similar to Chorismate synthase 1, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate phospholyase 1) (GB:Q42884); similar to putative chorismate synthase [Fagus sylvatica] (GB:ABA54870.1); similar to Chorismate synthase, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate phospholyase) (GB:P27793); contains InterPro domain Chorismate synthase; (InterPro:IPR000453)|Identical to Chorismate synthase, chloroplast precursor (EC 4.2.3.5) (5- enolpyruvylshikimate-3-phosphate phospholyase) [Arabidopsis Thaliana] (GB:P57720;GB:Q570J9;GB:Q93ZI3); similar to 3-phosphoshikimate 1-carboxyvinyltransferase, putative / 5-enolpyruvylshikimate-3-phosphate, putative / EPSP synthase, putative [Arabidopsis thaliana] (TAIR:AT1G48860.1); similar to putative chorismate synthase [Fagus sylvatica] (GB:ABA54870.1); contains InterPro domain Chorismate synthase; (InterPro:IPR000453) -0.105171672066941 -1.22425891287088 0.254082131590709 1 1.4913394126097 18.3469299730351 -0.105171672066941 0.0767001507573438
AT3G58510_at 7.73530111757832 7.08104925922321 7.61788738012801 7.29653933209061 6.93321096333566 7.65418234934975 6.68271973803025 7.44603124309881 6.77818026929212 6.68109044602688 7.00466606586957 6.94285852377208 7.12765595668484 7.01236887858087 6.79727385053926 7.27973581928355 7.63050739609527 6.6062994305141 6.88390905662638 0.154667936462942 0.154024741802573 0.153703166126571 0.152588780975587 0.152523857683922 0.159484988968439 0.156386647965792 0.154667900291176 0.156038471147050 0.156186366139020 0.163105369264358 0.154165405023182 0.162745579613881 0.1560700782814 0.158859952929821 0.155482920501634 0.151128473509238 0.151666151003911 0.151017774653745 3 3 + 21653947 21654412 21654184.545 21650955 21654772 + gene protein_coding_gene FALSE TRUE AT3G58510.1|AT3G58510.2|AT3G58510.3 DEAD box RNA helicase, putative (RH11)|ATP-dependent helicase Identical to DEAD-box ATP-dependent RNA helicase 11 (EC 3.6.1.-) (RH11) [Arabidopsis Thaliana] (GB:Q8LA13;GB:Q8W4P3;GB:Q9M2G5;GB:Q9ZS09); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42520.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G58570.1); similar to Os07g0202100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059135.1); similar to Os03g0805200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051626.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE89166.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.204145241464503 1.22264202919196 0.254661563200485 1 1.48959640561503 14.2214805049289 0.204145241464503 0.221195696823703
AT1G30810_at 5.41686678665653 5.87820894998495 5.66856287848966 6.04850624428362 6.47616541209981 5.69452422496928 5.8586629987494 5.49738486058208 5.46143493706921 5.56724754924864 5.27516173971371 5.35457746818490 5.96233293686505 5.85609453208591 4.96940444178346 6.19269153672624 5.72865114752667 5.16203670098055 5.54310613315996 0.182203035842614 0.184502263938406 0.187217515435094 0.184024237469238 0.191686010040440 0.192535717827185 0.194842221940880 0.182524110757997 0.199301718618351 0.186127626125609 0.182535547729591 0.184104415056988 0.185569379237657 0.183885549285996 0.185774915997243 0.186570781904493 0.19035651842768 0.189384985525603 0.185634258809002 1 1|0 -|/ 10938163 10938832 10938586.667 10937885 10942273 - gene protein_coding_gene FALSE TRUE AT1G30810.1 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to MEE27 (maternal effect embryo arrest 27), transcription factor [Arabidopsis thaliana] (TAIR:AT2G34880.1); similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G20400.1); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) 0.173924032062362 1.22227920471644 0.254791735732487 1 1.48920549327233 11.3606344708815 0.173924032062362 0.181392196385263
AT4G00950_at 4.26599416893744 4.25136936033458 3.72494764835877 3.8271140687665 4.75478637584932 3.97336473380225 5.31925411569123 5.03416202313411 5.22095261201179 5.01956370544679 6.20043914541635 5.32135021447896 5.93533170858175 6.01840864128076 5.02058443129354 5.06615441919904 5.33903181280391 5.45760358958582 5.33557954553858 0.24891445426558 0.234030374969625 0.247113892456299 0.246026679823099 0.233645873382123 0.250220934872371 0.234663479380797 0.235881782029091 0.249389138360582 0.235862636520452 0.236209788514402 0.231107281522281 0.241386056236976 0.248850696460298 0.23556433654697 0.229758854619558 0.241085749940234 0.229379938746430 0.231018399697954 4 4|0 -|/ 406315 406768 406593.5 405673 407142 - gene protein_coding_gene FALSE TRUE AT4G00950.1 MEE47 (maternal effect embryo arrest 47); transcription factor Identical to Protein At4g00950 [Arabidopsis Thaliana] (GB:Q9M160;GB:O23083) -0.147405334666252 -1.22001227159108 0.255606298382567 1 1.48676484414102 9.76232153669048 -0.147405334666252 0.145051312610875
AT4G11150_at 11.5910959182283 11.6698753969892 11.9365108808274 11.9497164884175 11.5859801287424 11.7019737174853 11.9349322902008 12.0406539805613 11.7476601793351 12.0415892803753 12.2229508200105 12.1382971907123 12.1371604574579 12.1331178530241 12.1400456229229 11.9156782019556 12.0139657858821 11.9224866789233 11.8793165201788 0.069947092395696 0.0685734320292553 0.070805652584335 0.0698340248266158 0.0685734320292553 0.0696779875332209 0.0693896836910222 0.0735720630011964 0.0848555636036673 0.0693024227326408 0.0693779019019637 0.0688307409044084 0.0685734320292553 0.0703817668776171 0.069589144921476 0.0685734320292553 0.0743134392160563 0.0749487252397359 0.0732237067910167 4 4|0 +|/ 6800316 6801664 6801183.5 6799931 6801928 + gene protein_coding_gene FALSE TRUE AT4G11150.1 TUF (VACUOLAR ATP SYNTHASE SUBUNIT E1) Encodes a vacuolar H+-ATPase subunit E isoform 1 which is required for Golgi organization and vacuole function in embryogenesis. Identical to Vacuolar ATP synthase subunit E (EC 3.6.3.14) (V-ATPase E subunit) (Vacuolar proton pump E subunit) (VATE) [Arabidopsis Thaliana] (GB:Q39258;GB:O82502); similar to VHA-E3 (VACUOLAR H+-ATPASE SUBUNIT E ISOFORM 3), hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT1G64200.1); similar to vacuolar ATPase subunit E-like protein [Thellun (GB:AAM19709.1); contains InterPro domain ATPase, V1/A1 complex, subunit E; (InterPro:IPR002842) 0.086423370218987 1.21970418817055 0.255717165488815 1 1.48643338891104 23.7850847600103 0.086423370218987 0.0304754042759171
AT3G43220_at 8.45484905086089 8.48372809360468 8.9337401478241 8.8871050018338 9.15409517471552 8.5950163619245 9.20948782121361 9.16267041300111 9.0159664382407 8.97825591802875 8.99769740567519 8.54026450794853 8.8389457400594 8.71184751479803 8.45445412135185 8.89229748240472 8.65672876018894 8.7406002772841 9.08578369345168 0.161401076958625 0.155160011182295 0.155006208996563 0.153663574065270 0.152301975472797 0.157502977758949 0.152134506208948 0.154361645787556 0.159090651082341 0.161524034819350 0.157015132738615 0.155539311032624 0.157424631575271 0.171701805026848 0.161427740420504 0.152134506208948 0.165835597782115 0.163486978368405 0.156550841268347 3 3|0 -|/ 15208115 15209386 15208933.6 15207851 15214050 - gene protein_coding_gene FALSE TRUE AT3G43220.1 phosphoinositide phosphatase family protein similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G20840.1); similar to ATSAC1 (SUPPRESSOR OF ACTIN 1), phosphoinositide 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G22620.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G14205.1); similar to Os03g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049173.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) -0.116379440061060 -1.21929392525836 0.25586486447515 1 1.48599209068544 17.7379730878494 -0.116379440061060 0.0975527766163028
AT3G52220_at 8.67192252679622 8.63476599698105 8.88507774555703 8.88031189843282 8.91377495014078 8.70412819059094 9.04935446124187 8.94409034306676 8.80381258671535 9.12800003832912 9.1618718361846 9.18875423420536 9.20174799680434 9.25323730894463 8.81666849647629 9.34465265148876 9.10844458023335 9.06688563272792 9.0222473892145 0.123765563984985 0.121654048262603 0.141485584294807 0.128908771034972 0.120732852362710 0.131406030421136 0.125407510364866 0.125837611589875 0.137236694599215 0.132981030184455 0.124991410904345 0.123957193223996 0.130020876514362 0.121855651364751 0.136003000621315 0.123493909312612 0.128315638182448 0.121921109288264 0.126345053147857 3 3|0 -|/ 19380558 19381128 19380892.9 19380340 19382052 - gene protein_coding_gene FALSE TRUE AT3G52220.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF98440.1); similar to Os08g0558700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062496.1); contains domain gb def: Hypothetical protein F4F15.330 (At3g52220) (PTHR14580:SF3); contains domain FAMILY NOT NAMED (PTHR14580) 0.0894430174362078 1.21906676489532 0.255946674829356 1 1.48574778950112 17.8991630208773 0.0894430174362078 0.0411111812767998
AT3G44610_at 3.79626057411673 4.69923371107885 4.24206950380261 4.66603623084947 5.08429885485883 5.52996547642513 5.39069497235342 5.57640984513554 5.158701743344 5.34441906594788 5.17755831871828 5.585800432948 5.66950281206238 5.31761569926971 4.59784710129348 5.5878394072409 5.07713467621004 4.63295410185782 6.24615766700748 0.233247908987614 0.227046163005501 0.223475182824568 0.231236755979143 0.223556837965931 0.226787359094655 0.225550289340339 0.228382098154468 0.239781358186889 0.224558030552868 0.221968815061011 0.223228732017137 0.234374073256659 0.229120563935373 0.220799336710878 0.224632161464746 0.232797453645172 0.23910793242551 0.228083400446278 3 3 - 16199261 16199891 16199540.455 16199116 16203162 - gene protein_coding_gene FALSE TRUE AT3G44610.1 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G47750.1); similar to Os11g0150700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065761.1); similar to stpk1 protein kinase [Solanum tuberosum] (GB:CAA62476.1); similar to Os12g0149700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066161.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.181184257960082 -1.21890608737842 0.256004554819643 1 1.48557500637820 10.2675583431442 -0.181184257960082 0.191787750029653
AT1G03210_at 9.25829615109093 9.23900514988719 8.7766546580633 8.90273435346782 8.76222636555175 7.7967678488808 7.1712370566536 6.333267499577 7.80885851980669 6.47866180769856 7.0451225869987 7.32660221691485 6.03898747912605 7.60021331515657 6.67932649087734 6.5852829336799 6.36532984703412 7.07823706686224 6.68356423310212 0.214562580519316 0.215245012053612 0.223298006442155 0.215000303558479 0.215496047986033 0.239370399860203 0.217912004952533 0.223953342253359 0.232484582098251 0.219939707851691 0.217250125022360 0.214678196990729 0.214658750995593 0.220761345976507 0.218364313164910 0.215980627831736 0.232784283032676 0.226196540429452 0.218754768275753 1 1|0 +|/ 783396 783957 783693 782948 784240 + gene protein_coding_gene FALSE TRUE AT1G03210.1 phenazine biosynthesis PhzC/PhzF family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT4G02860.1); similar to Phenazine biosynthesis PhzC/PhzF protein [Medicago truncatula] (GB:ABE77454.1); contains InterPro domain Phenazine biosynthesis PhzC/PhzF protein; (InterPro:IPR003719) 0.204335282033751 1.21854974235565 0.256132957519343 1 1.48519186903803 15.1951482665384 0.204335282033751 0.222331224733201
AT3G33530_at 8.03496080495924 7.9621348446938 8.02307098354331 7.78897213705641 8.28075374044924 7.94564873330716 7.79792160698343 7.60739441847218 8.20929062770075 7.86831508222708 8.23126773894903 8.21542377629932 8.06638565089214 7.95729108224827 7.82266571240645 8.06863527312235 8.25119232817804 8.33077593428624 8.11812366475073 0.142462173347421 0.137961720066872 0.136831320626017 0.130675243100987 0.12762966682054 0.140960615586750 0.136286956754689 0.140805760871538 0.159737592056423 0.136312119745289 0.128728519513191 0.134069141826139 0.131643008534217 0.150582945912343 0.14148772373102 0.129377500233908 0.146575001729323 0.135164787974001 0.128963553796717 3 3 + 14103420 14104292 14103864.375 14096340 14104656 + gene protein_coding_gene FALSE TRUE AT3G33530.1 transducin family protein / WD-40 repeat family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26610.1); similar to bromodomain and WD repeat domain containing 2 [Mus musculus] (GB:NP_758459.1); similar to Os02g0137000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045826.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.105860020983373 1.21792351700084 0.256358735371789 1 1.48451874402618 16.0217060646534 0.105860020983373 0.0790581183991893
AT1G54690_at 6.60737576935232 6.78457845993148 6.78661541161748 6.63645604252132 6.84460426620302 6.38760311117636 6.89528530097885 6.2186090419214 6.18174917884712 6.30475910980625 6.24890215372595 7.04182441791579 6.21293502943437 6.16563517156144 7.17705448019886 6.68963731582001 6.23593081428899 6.49000536678739 6.33350047307461 0.168386849702858 0.17083242753449 0.172164417481948 0.174351834322582 0.170590280911719 0.171609516519095 0.180026752435285 0.167108123648992 0.187514532352233 0.163830919111807 0.169005946001694 0.170801268657022 0.169474849813581 0.164753079937051 0.168489065512235 0.163437752604616 0.175235890308956 0.188824406733407 0.168873543590160 1 1|0 -|/ 20418276 20418839 20418558.8 20417983 20418954 - gene protein_coding_gene FALSE TRUE AT1G54690.1 histone H2A, putative Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT1G08880.1); similar to Histone H2AX (GB:O65759); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.148380952320403 1.21734702717573 0.256566726524642 1 1.48389928681146 13.0481793492757 0.148380952320403 0.146912039805166
AT3G02470_at 12.5067098984633 12.8080649662256 12.7343013911627 12.8577543272619 12.6243850411797 12.6618258726417 13.0859600588379 13.3396095241255 12.9554601000388 12.9347346483486 12.9813061354663 12.8902863064266 12.9784329875188 12.9568043277985 12.8084615417226 13.0324250964479 12.6099891865128 12.7619404515746 12.7073830242411 0.0675632196526703 0.0645704044018257 0.0643871203420605 0.0639037464050028 0.0642466325278215 0.0709445209601686 0.0649481829347319 0.0644456451604031 0.0727322155747525 0.0635672675392332 0.0646411543280664 0.0646174999889177 0.0635880683286719 0.0665906325363537 0.0668108567054993 0.0635700684385958 0.0756137765912966 0.0701832951534111 0.0635672675392332 3 3 + 510750 511248 510977.909 509103 511583 + gene protein_coding_gene FALSE TRUE AT3G02470.1|AT3G02470.2|AT3G02470.3 SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE); adenosylmethionine decarboxylase|SAMDC (S-ADENOSYLMETHIONINE DECARBOXYLASE) Encodes a S-adenosylmethionine decarboxylase involved in polyamine biosynthesis. Identical to S-adenosylmethionine decarboxylase proenzyme 1 (EC 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contains: S-adenosylmethionine decarboxylase 1 alpha chain; S-adenosylmethionine decarboxylase 1 beta chain] (SAMDC1) [Arabidopsis Thaliana] (GB:Q96286;GB:Q96531;GB:Q9M893); similar to adenosylmethionine decarboxylase [Arabidopsis thaliana] (TAIR:AT5G15950.2); similar to S-adenosylmethionine decarboxylase [Brassica juncea] (GB:AAS45435.1); similar to S-adenosylmethionine decarboxylase proenzyme 3 (AdoMetDC 3) (SamDC 3) [Contains: S-adenosylmethionine decarboxylase 3 alpha chain; S-adenosylmethionine decarboxylase 3 beta chain] (GB:Q9SDM8); contains InterPro domain S-adenosylmethionine decarboxylase; (InterPro:IPR001985) -0.101961478605439 -1.21620382574455 0.256979591811364 1 1.48267146801952 25.6989838908505 -0.101961478605439 0.0717280521579244
AT1G78690_at 4.91035203626108 5.33556571014226 4.88743673272295 4.59204741130123 4.76286646271617 4.85655671317719 5.94631460721355 5.09228966661212 4.88618367334194 5.39973523066846 5.6532722532845 6.13054237216229 5.79667744720261 5.72161705586179 5.51420337090118 5.19749140579899 4.89916182956628 5.14360951003823 5.5994348019468 0.208998551885429 0.207712485525273 0.217796612881070 0.204758577859726 0.202944306173879 0.224920050909719 0.215909637454569 0.214226349008908 0.225508570448958 0.202944306173879 0.207825899428214 0.208187337159509 0.211795076628181 0.204746437884774 0.214049896434488 0.206194679870877 0.233776521744320 0.208688416915538 0.202944306173879 1 1|0 +|/ 29602258 29603278 29602909.2 29601548 29603522 + gene protein_coding_gene FALSE TRUE AT1G78690.1 phospholipid/glycerol acyltransferase family protein similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G05510.2); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE88806.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain Tafazzin; (InterPro:IPR000872) -0.167224835730809 -1.21545434858577 0.257250560825929 1 1.48186694118205 10.4490235713122 -0.167224835730809 0.173590130223749
AT3G28970_at 8.59301564788031 8.66298388972775 8.8134788473504 8.71408563948442 8.73329016796708 8.66046822758172 8.63834879843304 8.63834011314728 8.45954059972708 8.48306987554144 8.22171861796261 8.06550907579595 8.2160417053721 8.23428971762367 8.17936241995258 8.51592000477694 8.20469168828827 8.28333405921141 8.57775852847437 0.152058497997296 0.145538000542142 0.149630646976139 0.142621153376791 0.145845157899960 0.147189810009208 0.142379530991594 0.146874105427508 0.151303122681126 0.139366394461769 0.148269241274400 0.142172290498037 0.141775358370746 0.145561960660921 0.148254050713290 0.145215995720188 0.152818655168006 0.139376220523289 0.139661137712029 3 0|3 /|- 10989232 10989872 10989471.333 10989024 10991158 - gene protein_coding_gene FALSE TRUE AT3G28970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12760.1); similar to Protein of unknown function DUF298 [Medicago truncatula] (GB:ABE80372.1); contains InterPro domain Protein of unknown function DUF298; (InterPro:IPR005176) -0.084761324246273 -1.21527102233200 0.257316877113381 1 1.48167020074596 17.0552004559651 -0.084761324246273 0.0245210579523509
AT2G39000_at 9.51682596164309 9.56989531152469 9.63117100861417 9.62508458485014 10.2852416949790 9.87754412399318 9.46771057353972 9.25278639221679 9.71753411252684 9.28852616883123 9.43589593029492 8.93417795153998 9.28020223177979 9.31243813774829 9.1287816806777 9.42635355910488 9.369862746762 9.23925150452068 9.36282730768601 0.118101843464041 0.119031107022702 0.129134073670672 0.12810894009592 0.123329960910172 0.135022699840518 0.118378755179525 0.124742008150919 0.120382666711428 0.126994916274257 0.119888653788742 0.122098201505220 0.135142894892796 0.124592140465717 0.129423073468333 0.116083664763879 0.129632916654752 0.125103166063019 0.125303143834852 2 2|0 -|/ 16293589 16294319 16293936.3 16293414 16295048 - gene protein_coding_gene FALSE TRUE AT2G39000.1|AT2G39000.2|AT2G39000.3 GCN5-related N-acetyltransferase (GNAT) family protein similar to Os02g0806000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048446.1); similar to hypothetical protein slr1906 [Synechocystis sp. PCC 6803] (GB:NP_440447.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182)|similar to Os02g0806000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048446.1) 0.106265199083441 1.21508295570854 0.257384922791153 1 1.48146839403160 19.0143656218292 0.106265199083441 0.0802912310665785
AT3G46110_at 4.96635569818069 4.8596255196802 4.71113742795933 5.22371291076809 4.83850492953812 4.99526900683975 4.23232003838846 4.48811488742831 5.34979343851024 4.46435678911285 4.59045882829291 4.73566739696564 4.07506082723682 5.05879754330974 4.57449729877554 4.78092440027329 4.44552929780651 4.95309746484063 4.33826759722041 0.189776380984025 0.195515766600667 0.192416540233611 0.203600799793434 0.192095118081024 0.190213377224553 0.190177714405674 0.19274896727288 0.195284754726738 0.190196154390417 0.195595959183977 0.189776380984025 0.195430508539758 0.200468749390718 0.189776380984025 0.194866579548354 0.196872383320942 0.196881003493647 0.192467065036917 3 3 + 16943841 16944516 16944051.091 16943097 16944711 + gene protein_coding_gene FALSE TRUE AT3G46110.1|AT3G46110.2 signal transducer similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59790.1); similar to auxin-regulated protein [Lycopersicon esculentum] (GB:AAL08561.1); contains InterPro domain Protein of unknown function DUF966; (InterPro:IPR010369); contains InterPro domain CheW-like protein; (InterPro:IPR002545) 0.119916778381688 1.21310302820228 0.258102192425931 1 1.47934510202031 9.47399342258227 0.119916778381688 0.104426830681694
AT3G19790_at 4.80932383510059 4.38522451462093 3.84545422444108 4.27359781896926 4.96848631136859 4.27058310190735 5.0435256706807 5.5016327869717 5.07251034183793 4.3803687764437 5.27338075834526 4.93930991872101 4.36414509919394 5.02212309771749 5.37326811313993 4.61086658367238 4.82978952071442 4.93533906848247 4.53782264680873 0.242685252824529 0.231414617016616 0.243467694255823 0.235509497515113 0.233584828230973 0.258040458359170 0.235024273556274 0.231414617016616 0.240765121112466 0.231414617016616 0.237172329799821 0.231414617016616 0.242486782341497 0.234363856562469 0.238145711749241 0.231414617016616 0.239754925209911 0.232874460754675 0.234146736544238 3 3 - 6874992 6875314 6875132.364 6874609 6875862 - gene protein_coding_gene FALSE TRUE AT3G19790.1|AT3G19790.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G22450.1) -0.170217911351833 -1.21282672817398 0.258202418362176 1 1.47904898264914 9.42827604552177 -0.170217911351833 0.178178933324741
AT4G29590_at 8.85529713903419 8.63959691289756 8.5424247741824 8.31971874586326 8.99083861138048 8.37721132845198 9.72813651219736 9.42404257021835 9.19194317091228 9.14350435014007 9.28417699108616 9.34610631713216 9.12072693475649 9.34621263161482 9.41428282776303 9.78909416669578 9.15648515313909 9.53447237818704 8.79140060434567 0.122428577454299 0.121504593325038 0.130415891460995 0.126785044711811 0.121504593325038 0.134898608885746 0.121504593325038 0.124273745620446 0.126958198709257 0.125722238156788 0.125930240754358 0.123093182270973 0.121504593325038 0.124425964944672 0.121504593325038 0.125146070682927 0.131842664332459 0.122661453759559 0.125444094600293 4 4|0 -|/ 14512746 14513697 14513096.857 14512555 14514498 - gene protein_coding_gene FALSE TRUE AT4G29590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01660.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79229.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216) -0.136278976018256 -1.21222637460460 0.258420302765576 1 1.4784057232071 18.0677720160346 -0.136278976018256 0.130094772153859
AT2G04740_at 5.3983794166012 5.53454046315992 5.45712433448837 5.42299682366407 5.8414562773601 5.5644535952527 5.18422884491308 5.41482947902904 4.96815602232314 4.87884384721424 4.00015897064035 4.24134633875912 4.51668242482951 4.51917090224002 4.08379063275871 4.24437617809308 5.32263276872708 4.50192060720342 4.60051460717277 0.269555743492867 0.261705920729726 0.272313403680207 0.264698001254930 0.271851260654042 0.261705920729726 0.274467125856365 0.261705920729726 0.269580674431202 0.270994131573999 0.264990377399822 0.261705920729726 0.269381768741016 0.261705920729726 0.265043771071852 0.262902824479862 0.261705920729726 0.262824888012304 0.261705920729726 2 2 + 1658936 1659534 1659198.3 1657118 1659686 + gene protein_coding_gene FALSE TRUE AT2G04740.1 ankyrin repeat family protein similar to MGC80260 protein [Xenopus laevis] (GB:AAH72172.1); similar to Os06g0318200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057501.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) -0.0992825496157375 -1.21183912198274 0.258560927274874 1 1.47799090957019 10.0995501602135 -0.0992825496157375 0.0669369659051341
AT2G01140_at 8.29854320979577 8.34257211229914 8.43150195183946 8.64390901074436 7.75196892319272 8.06161416082224 8.18388737719128 8.50282010930173 7.76974006622276 8.19265150935572 8.54297939153476 8.3357066674969 8.11558771426945 8.52206114225005 8.46601123108237 8.28423385063468 7.90813818147809 8.05771333547882 7.89271640221938 0.162145054313604 0.159637414169369 0.158863585731792 0.162533251061864 0.154343342097106 0.159996449663696 0.153177339865406 0.158710058908481 0.171340462064470 0.160673082114444 0.160235511501284 0.153952728237136 0.156991037156899 0.163497042389082 0.161381333115357 0.154715645588294 0.168271011488987 0.154449753087263 0.159847669408379 2 2 - 95081 95548 95295.818 94810 96652 - gene protein_coding_gene FALSE TRUE AT2G01140.1 fructose-bisphosphate aldolase, putative similar to fructose-bisphosphate aldolase, putative [Arabidopsis thaliana] (TAIR:AT4G38970.1); similar to plastidic aldolase NPALDP1 [Nicotiana paniculata] (GB:BAA77604.1); similar to Os01g0118000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041857.1); contains InterPro domain Fructose-bisphosphate aldolase, class-I; (InterPro:IPR000741) 0.108822044757451 1.21156192110713 0.258661626887443 1 1.47769403555106 16.3924804061704 0.108822044757451 0.0855971059013106
AT2G01720_at 9.94100037455266 10.2743858223182 9.92789834318755 9.95136739022855 9.87017317378903 9.7657475692992 9.60008158358746 9.64506514690228 9.1343551490241 9.13739771379694 9.27926199306974 9.56932758772112 9.07991607199958 9.32821410790924 9.47263044204284 9.1750374149675 8.8001531428505 9.48593712647041 9.01179721203456 0.142883681901675 0.141277488532721 0.144536014953289 0.13922265661051 0.137561481511832 0.147012144196711 0.142517204400295 0.136612761941093 0.159209083891052 0.143959984927443 0.138081887971697 0.139096258772268 0.140735279391712 0.137336882053327 0.139306785242126 0.137791244339728 0.164124997029347 0.147650128099825 0.144369765123654 2 2|0 -|/ 317218 318291 317683.333 317032 320263 - gene protein_coding_gene FALSE TRUE AT2G01720.1 ribophorin I family protein similar to ribophorin I family protein [Arabidopsis thaliana] (TAIR:AT1G76400.1); similar to Os05g0301500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055134.1); similar to putative ribophorin I homologue [Hordeum vulgare subsp. vulgare] (GB:CAA74910.1); contains InterPro domain Ribophorin I; (InterPro:IPR007676) 0.0964782157731283 1.21017375773567 0.259166394054513 1 1.47620804926046 19.0561281392318 0.0964782157731283 0.0610921888997702
AT3G52105_at 7.57576810420428 8.02528123214064 7.27852335660287 7.53203327018023 7.99213380372781 7.9460290533905 7.32313520306933 7.58026920709815 7.2850873061853 7.00472962590603 7.29603547649091 7.61896336871911 7.45114807660081 7.58707742377072 7.26013722530278 7.6157940233704 6.9703037772552 7.49691749951977 7.42783325180194 0.149190212507998 0.137982988793608 0.149459546080268 0.134447669265937 0.135880531446271 0.152426866645731 0.161777767435036 0.134221257266985 0.138025891382939 0.151792385926917 0.142662031934616 0.134221257266985 0.14567207517126 0.134447823176397 0.136546851833061 0.140392414315964 0.138728594872538 0.141278483133297 0.136790892008022 3 3 + 19334383 19334527 19334455 19334310 19334805 + gene protein_coding_gene FALSE TRUE AT3G52105.1 similar to putative protein [Medicago truncatula] (GB:ABE93778.1) 0.116948407630771 1.20945088591172 0.259429566535013 1 1.4754346969376 14.9822785722233 0.116948407630771 0.100098753761364
AT4G37550_at 9.22046331881651 9.50336754003636 9.64720421950448 9.7215552777870 10.1638838145460 10.0097521567657 10.4744755674863 10.359665222441 10.0946141689292 10.6079457161699 10.6325942212067 10.6449797110839 10.4091480795729 10.4295506360314 10.4689680133202 10.8562776384973 10.5811953683023 10.552205225957 10.4243267495011 0.0978212211698202 0.0954964777392189 0.0993026768078391 0.097823147078304 0.0948180832944874 0.102441718453899 0.0955794068913194 0.0919922366939937 0.111042254387432 0.0949461028183043 0.094329503150682 0.0911087206388695 0.094818240871145 0.0950138152679272 0.093561194521876 0.0911087206388695 0.0969452020383616 0.0946998600296434 0.094975011784585 4 4|0 +|/ 17644813 17645625 17645189.3 17643575 17645824 + gene protein_coding_gene FALSE TRUE AT4G37550.1|AT4G37550.2 formamidase, putative / formamide amidohydrolase, putative|formamidase similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37560.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346.1); similar to formamidase [Synechococcus sp. WH 5701] (GB:ZP_01084549.1); contains InterPro domain Acetamidase/Formamidase; (InterPro:IPR004304)|similar to formamidase, putative / formamide amidohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G37560.1); similar to Os01g0764900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044346.1); similar to acetamidase/formamidase family protein [Synechococcus sp. JA-3-3Ab] (GB:YP_475820.1); contains InterPro domain Acetamidase/Formamidase; (InterPro:IPR004304) 0.0961709692510826 1.20920497204597 0.259519145222949 1 1.47517168193665 20.3612927596462 0.0961709692510826 0.060569345317037
AT2G45690_at 6.41163426290566 6.91230438281706 6.63596999832775 6.9360381101382 7.60510351889621 6.81958399228749 7.60906250902691 6.44257480820312 4.79395542952289 5.69961955274435 5.55278221485697 5.20409846022009 5.62540602956782 5.78866147694615 4.88214005912389 5.77736596727992 5.82849129245473 5.52249515447013 5.13294935867352 0.272654528740044 0.264244554800439 0.277234791956349 0.270041659948722 0.275496656176681 0.271469524563173 0.269581508582242 0.273641936763662 0.287111066480224 0.278204405258196 0.264244554800439 0.264244554800439 0.26815589981963 0.272806631348642 0.267447740479467 0.269808502669166 0.267038569425220 0.272692683623915 0.26829463680186 2 2 - 18830551 18831443 18831090.909 18830245 18832809 - gene protein_coding_gene FALSE TRUE AT2G45690.1 SSE1 (SHRUNKEN SEED 1) Encodes a protein with similarity to yeast Pep16p, a membrane localized protein involved in peroxisome assembly and protein-trafficking. SSE1 mutant seeds do not accumulate oils and dessicated seeds have a shrunken appearance. Involved in protein and oil body biogenesis. SSE is expressed during seed development, reaching the highest peak in mature siliques. Expression in leaves and roots is low compared to cotyledons and flowers. Located in peroxisomes and endoplasmic reticulum. Homologous to the peroxin PEX16 and complements the pex16 mutants of the yeast Yarrowia lipolytica. similar to putative shrunken seed protein [Brassica napus] (GB:AAZ20121.1); contains domain FAMILY NOT NAMED (PTHR13299); contains domain SUBFAMILY NOT NAMED (PTHR13299:SF3) 0.234559274529467 1.20893401009800 0.259617877543321 1 1.47488191922553 12.2872947122479 0.234559274529467 0.263500712171294
AT4G24760_at 4.10126187646257 4.91236150275951 4.62221060737545 4.66523785074563 5.25352432771564 5.35098357443109 4.84732156872247 5.06304112869816 5.70036377805853 5.12409277439574 4.88941664243276 4.42690932600157 4.81311646219589 5.04320592993337 4.58612977387211 4.89448172278483 4.45484579413924 5.10102240356258 5.11178528694877 0.200733510757007 0.195413239784607 0.193500231890327 0.191269090879230 0.197252026219463 0.195799795512687 0.190669188105927 0.207702278269371 0.206920350703489 0.202216227605734 0.193001842034917 0.196463739105754 0.197583982031682 0.19864302818541 0.202601402558489 0.198997738837436 0.199482659352304 0.200044229103770 0.192285873935556 4 4|0 -|/ 12761723 12762296 12761944.9 12761293 12763791 - gene protein_coding_gene FALSE TRUE AT4G24760.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14390.1); similar to Esterase/lipase/thioesterase [Medicago truncatula] (GB:ABD32255.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) -0.146973517681387 -1.20865913203920 0.259718068309677 1 1.47458801395106 9.89610361461364 -0.146973517681387 0.146409480166619
ATCG01080_at 10.4293646329873 11.2487727463565 11.0145231078551 11.4583602396915 10.317196512594 10.4955881955308 10.5123936932507 11.376070387581 11.9238107939728 11.7418423170949 11.2695938317841 11.9620645564475 11.4793174690688 11.5396136920693 11.0162421067756 11.7274147209439 11.0598411022085 12.1488423686002 11.9143215634859 0.101673956569835 0.102730669995623 0.101435797106526 0.105627539139394 0.104721383128451 0.108482504833080 0.104997344922647 0.100629572002765 0.105488120022234 0.100629572002765 0.101603027147939 0.102013092923119 0.101160932270042 0.102677131013611 0.103813986969215 0.100629572002765 0.110839758532463 0.100629572002765 0.100629572002765 C C - 118383 118881 118687.818 118377 118907 - gene protein_coding_gene FALSE TRUE ATCG01080.1 NADH dehydrogenase ND6 Identical to NAD(P)H-quinone oxidoreductase chain 6, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 6) (NADH-plastoquinone oxidoreductase chain 6) (ndhG) [Arabidopsis Thaliana] (GB:Q95695); similar to NADH-plastoquinone oxidoreductase subunit 6 [Gossypium hirsutum] (GB:YP_538987.1); contains InterPro domain NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; (InterPro:IPR001457) -0.202429339161654 -1.20852969596787 0.259765257671361 1 1.47444963403363 22.5492125840668 -0.202429339161654 0.222035411075888
AT3G06580_at 9.44793788832243 9.48110725902578 9.7514944544131 9.58485970496812 10.0937544993416 9.62138482808772 9.5777301159815 9.20094954556491 9.24857826577946 9.52047890627122 9.38241753422113 9.22524009910924 9.34413444465412 9.37579405562177 9.1063282597979 9.0675263075793 9.29643669481323 9.20871003527275 9.25936376058184 0.104668546452772 0.103073554561597 0.105854032738340 0.103073554561597 0.109742740476259 0.112321242726347 0.107907841659774 0.10775424379793 0.117982897109960 0.109590948415015 0.103787476176330 0.107064668598397 0.104061788249555 0.108325790278628 0.103909452140936 0.109507740353928 0.113176517420923 0.103073554561597 0.106828083393517 3 3|0 -|/ 2049359 2050186 2049746.444 2048911 2052031 - gene protein_coding_gene FALSE TRUE AT3G06580.1 GAL1 (GALACTOSE KINASE 1); ATP binding / galactokinase Encodes a protein with galactose kinase activity. The gene was shown to complement the yeast Δgal1 mutant defective in the galactokinase gene GAL1. Identical to Galactokinase (EC 2.7.1.6) (Galactose kinase) (GAL1) [Arabidopsis Thaliana] (GB:Q9SEE5;GB:O24021;GB:O48936); similar to ARA1 (ARABINOSE SENSITIVE 1), ATP binding / galactokinase [Arabidopsis thaliana] (TAIR:AT4G16130.1); similar to putative galactose kinase [Trifolium pratense] (GB:BAE71243.1); similar to Mevalonate and galactokinase [Medicago truncatula] (GB:ABE82788.1); similar to galactokinase [Pisum sativum] (GB:CAF34022.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Galactokinase; (InterPro:IPR000705); contains InterPro domain GHMP kinase, ATP-binding region; (InterPro:IPR006203); contains InterPro domain Mevalonate and galactokinase; (InterPro:IPR006206); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.121979310409243 1.20794927807598 0.259976950988728 1 1.47382923447162 18.8917174901771 0.121979310409243 0.108620451951595
AT4G34700_at 10.3979884953789 10.4903650361041 10.2839834292853 10.4431848313079 10.2580538755925 10.1217080328155 10.3816095142377 10.5108386054916 9.88290317297552 10.1481292243736 10.5975550583462 10.4955531154467 10.2477459610086 10.3418784232750 10.5302840933298 10.4167117573379 10.1990546929904 10.1187816938278 10.0289364923538 0.0877102430048636 0.0865543885358661 0.0858118450268263 0.0859474615614565 0.0854731267841527 0.090301264542656 0.090499964528806 0.088035529628871 0.105511784644123 0.0919382173795014 0.0875686185179497 0.0881547581318882 0.0866328270769258 0.088731024897209 0.0875085381520618 0.0872039008936587 0.0924120022575773 0.0910606167805269 0.087689149919827 4 4|0 +|/ 16556910 16558182 16557358.375 16556830 16558851 + gene protein_coding_gene FALSE TRUE AT4G34700.1 complex 1 family protein / LVR family protein similar to Os06g0714100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058571.1); similar to hypothetical protein CX157 [Homo sapiens] (GB:AAK67625.1); contains InterPro domain Complex 1 LYR protein; (InterPro:IPR008011) 0.0899940494957807 1.20639667442199 0.26054392134129 1 1.47217068121017 20.5551840921998 0.0899940494957807 0.0455133300453895
AT3G29760_at 8.28695361831432 8.44762743867242 8.28033495739178 8.2682463019821 8.79344053428726 8.25772125394204 9.16239144097091 8.94358436233848 8.26780096886213 8.4334907917128 8.78009844542659 8.58796167129971 8.76916765169708 8.56197603722094 8.19152752557924 8.80395368947514 8.49364102136711 8.496492411733 8.83866863916397 0.142642920784009 0.137594874314023 0.139289188090524 0.147192640999831 0.143411443593048 0.147574034848810 0.140457955240213 0.137011382937871 0.151938485203891 0.148098819023616 0.145544969878825 0.137011382937871 0.147343435242831 0.157543541894627 0.154958737845982 0.137011382937871 0.152939816251112 0.152322925807529 0.142317302188172 3 3 - 11592282 11593142 11592804.778 11591984 11594312 - gene protein_coding_gene FALSE TRUE AT3G29760.1 NLI interacting factor (NIF) family protein similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT2G36540.1); similar to unknown protein [Sorghum bicolor] (GB:AAM47581.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.118960639847340 -1.20633661257972 0.260565874721295 1 1.47210655002867 17.104498708473 -0.118960639847340 0.103952986882523
AT2G29510_at 6.57822414377225 6.86812945446094 5.87326509814562 6.24849012053853 6.36786700527777 6.48904196799991 6.23630670394009 6.80914032225615 6.72343933427665 7.20504415501286 7.16301164076266 7.1724674373989 7.15193783088752 7.1984957956456 6.65759888046805 7.06843103112992 6.8230248447227 6.55819025456194 6.67390311928477 0.205587890093853 0.202994874296965 0.2164292703077 0.206116748862838 0.209154687086967 0.206309653798462 0.207436229882092 0.206317648783238 0.213896077417948 0.211249829797268 0.205707529033091 0.204367745391603 0.200174050040039 0.210679805221019 0.205944559180229 0.210905724206708 0.203604194547729 0.212442324402580 0.203141553533561 2 2 + 12644255 12644886 12644502 12641591 12645095 + gene protein_coding_gene FALSE TRUE AT2G29510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59020.1); similar to hypothetical protein MtrDRAFT_AC146330g22v1 [Medicago truncatula] (GB:ABE90884.1); contains domain Transcriptional factor tubby, C-terminal domain (SSF54518); contains domain no description (G3D.3.20.90.10) -0.135800798263916 -1.2062558899038 0.260595382292995 1 1.47202036162765 13.3546115607015 -0.135800798263916 0.130385019522302
AT4G19210_at 9.40225442089742 9.46174660952966 9.5131557912848 9.46244944777894 9.40079149048582 9.17138713040128 9.4737048246091 9.5043919881973 8.4638977581821 8.73228757711407 9.09098660164491 9.11677784737934 8.595132934532 8.46404473805646 8.95549806743321 8.51896770916487 8.66825532953363 8.83245563016279 8.3908178350382 0.117390833727424 0.111931775452333 0.113513880892066 0.115429621870474 0.116468984301739 0.111931775452333 0.115929488760532 0.111931775452333 0.141119909197696 0.113280504588260 0.113000897255973 0.111931775452333 0.116989261888299 0.122849751091600 0.119533652081173 0.114084882311383 0.119059587941623 0.119391747601959 0.118859587611871 4 4|0 +|/ 10504061 10504755 10504402.778 10501211 10505228 + gene protein_coding_gene FALSE TRUE AT4G19210.1 ATRLI2 (Arabidopsis thaliana RNase L inhibitor protein 2) member of RLI subfamily similar to ATRLI1 (Arabidopsis thaliana RNase L inhibitor protein 1) [Arabidopsis thaliana] (TAIR:AT3G13640.1); similar to RNase L inhibitor-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAM19067.1); similar to 68 kDa protein HP68 [Triticum aestivum] (GB:AAL26702.1); similar to PREDICTED: similar to CG5651-PA, isoform A [Tribolium castaneum] (GB:XP_968009.1); contains InterPro domain ABC transporter, ABCE; (InterPro:IPR013283); contains InterPro domain Possible metal-binding region in RNase L inhibitor, RLI; (InterPro:IPR007209); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.0888426523198089 1.20571554714000 0.260792971136993 1 1.47144353381855 18.0783681699063 0.0888426523198089 0.0422758468914968
ATCG01010_at 5.00947096730653 7.00652576597501 6.2731450335895 6.72084582013746 6.07903105815868 6.17819865281679 6.29930553490142 6.93623524882002 7.14784320478698 7.264528090269 6.70513676182483 7.69392063478281 6.0504013082524 6.84340037482109 5.6520585716073 7.43306006912738 4.9805554470574 7.93409822867424 7.48935638925942 0.320659801579513 0.300386492948518 0.312474724205008 0.315807507101143 0.304857505969674 0.302707169624363 0.306021334616258 0.299773250724235 0.304405595388779 0.302742025791986 0.299773250724235 0.303158645458557 0.30796969047953 0.307273573122691 0.313573954660173 0.299773250724235 0.334503836384623 0.309595692612591 0.300858959091734 C C - 110447 110926 110573.273 110398 112638 - gene protein_coding_gene FALSE TRUE ATCG01010.1 Chloroplast encoded NADH dehydrogenase unit. Identical to NAD(P)H-quinone oxidoreductase chain 5, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 5) (NADH-plastoquinone oxidoreductase chain 5) (ndhF) [Arabidopsis Thaliana] (GB:P56752;GB:Q9MS93); similar to NADH dehydrogenase subunit F [Catolobus pendulus] (GB:ABC65933.1); similar to NADH dehydrogenase subunit F [Turritis glabra] (GB:ABC66036.1); similar to NADH dehydrogenase subunit F [Erysimum capitatum] (GB:ABC65965.1); contains InterPro domain NADH dehydrogenase (ubiquinone), chloroplast chain 5, C-terminal; (InterPro:IPR002128); contains InterPro domain NADH/Ubiquinone/plastoquinone (complex I); (InterPro:IPR001750); contains InterPro domain NADH-plastoquinone oxidoreductase, chain 5; (InterPro:IPR003945); contains InterPro domain NADH-Ubiquinone oxidoreductase (complex I), chain 5/L, N-terminal; (InterPro:IPR001516); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 5; (InterPro:IPR003916) -0.319538104164254 -1.20564203039150 0.260819863731056 1 1.47136506672358 13.2939221698583 -0.319538104164254 0.371329402485972
AT2G37240_at 8.7661674085269 8.6613081949967 8.9977893771731 9.04368322380247 8.714419306174 8.47932574825988 10.0348776289303 9.92985062028281 8.70935952373022 9.09922415944219 8.99623414312463 9.04502894090277 9.3891038036011 9.16750234083338 8.8532148639044 9.58308834675485 9.69184497435229 9.17787595098855 8.83310824238507 0.102917502712646 0.0985417034415505 0.100729468011537 0.100968564313984 0.099302488270311 0.102242373147356 0.108097736899164 0.104431844564938 0.114596340940295 0.106437845019963 0.106041225258411 0.100281576095544 0.102750676438818 0.101603152935139 0.111548800005192 0.103889773834079 0.103260248625874 0.104863422758406 0.102070632226578 2 0|2 /|- 15647334 15648415 15647866.857 15647018 15648842 - gene protein_coding_gene FALSE TRUE AT2G37240.1 Identical to UPF0308 protein At2g37240, chloroplast precursor [Arabidopsis Thaliana] (GB:Q9ZUU2;GB:Q94A62); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65840.1); similar to Os03g0284600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049763.1); similar to PREDICTED: similar to TPA_exp: C9ORF21 isoform 2 [Pan troglodytes] (GB:XP_520707.2); similar to Os03g0729200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051153.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0909119269799528 -1.20302830416120 0.261777449032191 1 1.46857746903770 18.1377030113901 -0.0909119269799528 0.0487637684455405
AT1G19835_at 8.50062070095874 8.84104030256312 8.76942099323034 8.77838251417569 9.22459368957051 9.23486874694395 9.04549408098861 8.94381643255132 9.66270081745906 9.72620587942675 10.2765983586414 9.82586479765788 9.70152590152654 9.45370003445124 9.48365139180329 9.71859025440488 9.55231976181595 9.62969948117353 9.65755600946453 0.112132870121448 0.113776106919455 0.110083406944586 0.112313705311975 0.115132203043647 0.112268918251574 0.117537307095092 0.111552342435335 0.111881644970146 0.115519160725072 0.111572366315841 0.116271018908493 0.11542157767535 0.113471756162310 0.112299212641640 0.108675805133891 0.117750072124624 0.115639751041398 0.111709992974365 1 1 - 6856217 6856688 6856393.818 6855943 6860323 - gene protein_coding_gene FALSE TRUE AT1G19835.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47900.1); similar to Putative myosin-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL77142.1); similar to Os03g0246500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049544.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) 0.0960815594744509 1.20279199029833 0.261864168669063 1 1.46832563916182 18.61097867419 0.0960815594744509 0.0615281091041476
AT1G78800_at 6.13146126294992 6.25895669815597 5.7160506181242 5.73763469207531 6.57997925266353 5.30058560972383 6.18446043690897 5.78137286450168 5.5134550706319 5.1274863523905 5.62685590741914 5.22270147172132 5.43180869826344 5.7285430543811 5.0647755845809 5.23256520147794 4.98920992017305 5.05269118755094 5.73075778025184 0.212681543431110 0.212540903678655 0.214983776838376 0.214301927831159 0.214463020441539 0.222512597837796 0.225573870121330 0.214075262009879 0.219081106762482 0.210776644265668 0.208782570164592 0.211845070208825 0.213182346131397 0.215257571414626 0.222100967610897 0.214906958405248 0.225643726554973 0.213721375903229 0.208127165556643 1 0|1 /|- 29630832 29631437 29631113.778 29630552 29632862 - gene protein_coding_gene FALSE TRUE AT1G78800.1 glycosyl transferase family 1 protein similar to SUS5, UDP-glycosyltransferase/ sucrose synthase [Arabidopsis thaliana] (TAIR:AT5G37180.1); similar to Os04g0589600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053699.1); similar to PREDICTED: similar to Alg2 protein [Strongylocentrotus purpuratus] (GB:XP_794663.2); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.209544731022258 -1.2002611777532 0.262794372250974 1 1.4656307836582 11.3367511523650 -0.209544731022258 0.233209934220859
AT4G29390_at 9.93232116186286 9.95195048140382 9.83092838070344 9.74363428513384 9.89211103333625 9.7660253457789 9.76408919239563 10.0841883663875 9.76889783512745 9.51360803077134 9.62281067350298 9.65362680743818 9.67181962380731 9.66189486946637 9.71740153779764 9.6793346541366 9.3883097249154 9.20175070443756 9.64165324610696 0.089107222031524 0.0901196637569397 0.0955178714545824 0.0908637083260357 0.0932091907264156 0.0904250196088588 0.0872202448681457 0.0890792060359323 0.101234618161604 0.0929973479582985 0.0965345117488295 0.0904655165880165 0.0895045176112743 0.09365222724077 0.0898319987529718 0.0873352471714806 0.092053287649832 0.0967484930191316 0.0864882835023845 4 4|0 -|/ 14465649 14465757 14465688.778 14464993 14465989 - gene protein_coding_gene FALSE TRUE AT4G29390.1 40S ribosomal protein S30 (RPS30B) Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30A) [Arabidopsis thaliana] (TAIR:AT2G19750.1); similar to 40S ribosomal protein S30 (RPS30C) [Arabidopsis thaliana] (TAIR:AT5G56670.1); similar to Ribosomal protein S30 [Medicago truncatula] (GB:ABE80883.1); similar to Os06g0172600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056941.1); contains InterPro domain Ribosomal protein S30; (InterPro:IPR006846) -0.0958651677525895 -1.20014088675951 0.262838652629665 1 1.46550279252378 19.4786585034285 -0.0958651677525895 0.0615176229767522
AT2G22540_at 10.0664018093744 10.2506624000657 10.0929283732483 10.1065172427811 10.5043531817391 10.4240684739221 10.5344974986123 10.4559536633601 10.2717446127138 10.4029806383846 10.2467536708488 10.1111821225367 10.2518287437519 10.2117907641595 10.0926011766649 10.4658927777919 10.3180676193336 10.2775076270328 10.4526371072695 0.0740872810060363 0.0681801016853293 0.0708792908098115 0.0694657704216844 0.0701118509286555 0.072558008157903 0.0703477302607771 0.074389532410446 0.0731015259833065 0.0699376519520573 0.0715994459661395 0.0697587760129623 0.071778068616478 0.0717466244626599 0.0717643811141968 0.0684726293434168 0.0724586156395061 0.0682679537257801 0.0714389811603135 2 2|0 +|/ 9587588 9590199 9589643.833 9586954 9590973 + gene protein_coding_gene FALSE TRUE AT2G22540.1 SVP (SHORT VEGETATIVE PHASE); transcription factor Encodes a nuclear protein that acts as a floral repressor and that functions within the thermosensory pathway. It represses FT expression via direct binding to the vCArG III motif in the FT promoter. Identical to Protein SHORT VEGETATIVE PHASE (SVP) [Arabidopsis Thaliana] (GB:Q9FVC1;GB:Q9SJY1); similar to AGL24 (AGAMOUS-LIKE 24), transcription factor [Arabidopsis thaliana] (TAIR:AT4G24540.1); similar to short vegetative phase protein [Brassica rapa] (GB:ABI96182.1); contains InterPro domain Transcription factor, MADS-box; (InterPro:IPR002100); contains InterPro domain Transcription factor, K-box; (InterPro:IPR002487) -0.0868732074773744 -1.19952986751746 0.263063669535136 1 1.46485279627827 20.6157930881651 -0.0868732074773744 0.037418000513013
AT1G34320_at 6.7986294835215 6.73530138323253 6.68970491847725 6.49523914529147 7.27482030034307 6.38196601832266 6.8497552128995 6.61767903992716 6.08292466909892 6.29819768114354 6.82832805110061 6.83473187446379 6.69321058897571 7.15433420775953 6.24828767519486 6.59348309353792 6.04050790913605 5.94597654975507 6.18088264960676 0.221402630517776 0.207262724434990 0.207572756978893 0.215234383237098 0.204990349575698 0.22217561357774 0.212677587284395 0.218206164480126 0.227741604402274 0.209491705018225 0.213133280470489 0.204990349575698 0.205931012495188 0.207787414836719 0.223360042441119 0.211881146881506 0.229244709976455 0.218630424093585 0.210691519112793 1 1 + 12523528 12523991 12523729.909 12520157 12524348 + gene protein_coding_gene FALSE TRUE AT1G34320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G08660.1); similar to Os05g0430300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055623.1); similar to Trp repressor/replication initiator [Medicago truncatula] (GB:ABE83667.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82727.1); contains InterPro domain Protein of unknown function DUF668; (InterPro:IPR007700) 0.157556904752072 1.19744610732608 0.263832230825505 1 1.46263782242249 13.0952331845970 0.157556904752072 0.163522968398349
AT1G57540_at 6.10884021556282 6.43425688937084 5.99830468348274 5.86754399443611 6.70648732984873 6.67109597867865 5.83311130062908 6.19978258346921 5.2694841808936 5.52912602211026 5.34988235550713 5.07594030493272 5.48379274058825 5.87695567136467 5.29311543251236 5.33659038636247 5.68716610536136 5.78304332069971 5.50649022675691 0.21190582939427 0.215504611165346 0.216491084679666 0.214448076740923 0.229138962893099 0.226606888338498 0.214126295648332 0.213593793842576 0.2275469744129 0.211784051166322 0.213230243447253 0.211784051166322 0.219063784457954 0.217569789227757 0.214181704814861 0.213426183398696 0.220237551747311 0.22105713585575 0.21738955957997 1 1|0 -|/ 21314155 21314804 21314382.2 21313994 21315167 - gene protein_coding_gene FALSE TRUE AT1G57540.1|AT1G57540.2|AT1G57540.3 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD81218.1); similar to Os01g0250600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042596.1) 0.108818781216365 1.19676325192235 0.264084490166914 1 1.4619125436501 11.6878500050613 0.108818781216365 0.0880191383674954
AT4G34260_at 7.52057614260516 7.56783389543498 6.56067100506793 6.4523366499014 8.16853120929981 7.71810745912035 8.32782778007928 8.11686075400963 8.8450536547271 8.32976347134298 9.73234884541795 9.18073882378361 8.67241163745363 8.92652726509846 9.36251997685363 8.68740544578887 8.13959166586654 8.9615508088255 8.37802853946346 0.197609617342751 0.199345448663160 0.213527198092818 0.213882659804935 0.203191418627366 0.200479096478356 0.197584885898504 0.196667120421493 0.195183016149263 0.200999782636274 0.198772449815328 0.197228067574899 0.191777090720667 0.201717057676048 0.191978463827845 0.191777090720667 0.205549898307654 0.201756241365432 0.194936633352688 4 4 + 16400787 16401563 16401200.182 16398032 16401814 + gene protein_coding_gene FALSE TRUE AT4G34260.1 similar to Hypothetical protein [Oryza sativa] (GB:AAK98716.1); similar to large secreted protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66023.1); similar to large secreted protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66022.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928) -0.109045737696689 -1.1965136443099 0.264176749011730 1 1.46164749981210 16.2918441271801 -0.109045737696689 0.0884711006259633
AT4G16890_at 6.44899464954311 6.82507976972766 6.81131217075077 6.8262737367918 6.98564822015584 6.44149456359988 6.68123466742243 6.70427151409029 6.80015728376703 6.55101204336146 6.96826760931572 6.90728591030389 6.84148351947788 6.98949982085711 6.24219935669164 6.92842339614356 6.54279904936345 6.6776586217723 6.49225931101845 0.145434445305081 0.141944695644300 0.14395617062864 0.143951715062514 0.141625463104047 0.1536807266908 0.149887838338854 0.146747625504393 0.146927562875593 0.147896740772911 0.146746811272191 0.141625463104047 0.144610602240499 0.14812126223893 0.158648312020822 0.141625463104047 0.145396809228977 0.145532701614737 0.146006317827844 4 4|0 -|/ 9500525 9501491 9500909.5 9500525 9505474 - gene protein_coding_gene FALSE TRUE AT4G16890.1 SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) Encodes a Toll Interleukin1 receptor-nucleotide binding-Leu- rich repeat-type resistance gene (TIR-NB-LRR-type) involved in the salicylic acid-dependent defense response pathway. Mutant plants constitutively express pathogenesis-related (PR) genes and are pathogen resistant. Resistance signaling in snc1 requires EDS1, MOS3 and PAD4. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) [Arabidopsis thaliana] (TAIR:AT4G16950.1); similar to RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) [Arabidopsis thaliana] (TAIR:AT4G16860.1); similar to MRGH5 [Cucumis melo] (GB:AAO45748.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.124506485201874 1.19643932715465 0.264204222874941 1 1.46156859408403 13.4038778481134 0.124506485201874 0.114569214544521
AT2G20580_at 9.16468589846788 9.35248058628715 9.4821964957947 9.50949220853284 9.47541857896766 9.39224050573245 9.34091137073207 9.20837036665377 9.40015352843615 9.3720515059136 9.25848520364132 9.18482957535413 9.29901992217805 9.33300294915534 9.24197232630552 9.35645851326677 8.91100817185789 9.25708563081506 8.98375760481658 0.113445069546540 0.105513642401923 0.111856518551670 0.107711703759507 0.104225943602384 0.109890780282767 0.108137269541940 0.104225943602384 0.106981972799095 0.104433549393214 0.107926575114451 0.105631964979662 0.108553954588116 0.107480563328578 0.106710977849939 0.104641025283674 0.113891382345726 0.115007749923355 0.110361529981733 2 2|0 +|/ 8870894 8871532 8871266.5 8866091 8871946 + gene protein_coding_gene FALSE TRUE AT2G20580.1 AtRPN1a/RPN1A (26S proteasome regulatory subunit S2 1A); binding encoding the RPN subunits of the 26S proteasome similar to AtRPN1b/RPN1B (26S proteasome regulatory subunit S2 1B), binding [Arabidopsis thaliana] (TAIR:AT4G28470.1); similar to putative 26S proteasome regulatory subunit S2 [Oryza sativa (japonica cultivar-group)] (GB:BAD54002.1); similar to Proteasome/cyclosome, regulatory subunit [Medicago truncatula] (GB:ABE89010.1); similar to 26S proteasome regulatory complex, subunit RPN2/PSMD1 (ISS) [Ostreococcus tauri] (GB:CAL55270.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) 0.0882350659523423 1.19618359685135 0.264298780124395 1 1.46129709995582 18.6068346678763 0.0882350659523423 0.0425649784785771
AT1G72170_at 7.84345330954677 8.08899634574911 7.6838116771783 7.96780620528912 8.27092821910039 7.76117328499367 8.09577215426489 7.84184186362196 7.59681309694475 7.71168288622218 8.19896551562859 8.31669188301763 7.51461270525219 7.82137743657974 7.9519517170505 8.01684835853227 7.62216935270257 7.64493852398792 7.44968010513778 0.170121864830928 0.168016050120949 0.177504255310130 0.178169480942171 0.171671339443024 0.178337707256696 0.168751992780064 0.170199936637743 0.183205664290760 0.171029415411064 0.169554702050860 0.170134824167399 0.179662744441024 0.189039390600788 0.181266777770101 0.169894288154432 0.184897839061288 0.193915723026033 0.169522352358607 1 1|0 +|/ 27160081 27160554 27160392.889 27159997 27161368 + gene protein_coding_gene FALSE TRUE AT1G72170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22520.1); similar to hypothetical protein MtrDRAFT_AC125481g45v1 [Medicago truncatula] (GB:ABE94326.1); similar to Os03g0840900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051850.1); contains InterPro domain Protein of unknown function DUF543; (InterPro:IPR007512) 0.126649834418521 1.19597540403513 0.264375780633902 1 1.46107610312279 15.6802244488158 0.126649834418521 0.118042431898292
AT4G20440_at 7.51010883516313 7.69949375168758 7.14041013674334 7.36110139046073 7.2483318905421 7.09894743180119 6.92318286247959 7.86811534828303 6.37847056123462 6.42955257977012 6.72283360448791 7.03628623845404 7.01842133088289 6.81365620497668 7.47560647240931 6.7744764786303 6.5928824352901 6.68567239488778 6.01337155024246 0.208241131300208 0.212371331742311 0.212237270261545 0.209935076474576 0.213308961918031 0.224496049387210 0.215286485074659 0.215672341159198 0.222477974637613 0.209047818034763 0.207633684465526 0.211475432959136 0.211085334980569 0.219877276452649 0.209229872644042 0.207633684465526 0.208968923906298 0.211607331631728 0.213509434131719 4 4 - 11022859 11023414 11023188.182 11022086 11023766 - gene protein_coding_gene FALSE TRUE AT4G20440.1|AT4G20440.2|AT4G20440.3 SMB similar to small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative [Arabidopsis thaliana] (TAIR:AT5G44500.2); similar to Small nuclear ribonucleoprotein-associated protein B' (snRNP-B') (Sm protein B') (Sm-B') (SmB') (snRPB') (GB:Q9N1Q0); similar to small nuclear ribonucleoprotein polypeptide B/B' isoform B' [Bos taurus] (GB:NP_001029903.1); similar to snRNP-associated polypeptide N (GB:AAA42059.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.164076838785076 1.19546547779201 0.264564455282179 1 1.4605349278449 13.9381002686041 0.164076838785076 0.173036007106922
AT2G30695_at 5.59964421287615 5.44193867175087 4.96276645029823 4.7760353817197 5.85608887758558 5.23588306543333 5.89078138273095 5.26824364002158 3.66925006493314 4.63071090525054 4.89827944194058 5.20489320740218 4.66420826962765 5.25491200042328 5.53859679134227 5.43157387592598 4.21567376353319 4.95840792547827 4.81533366736723 0.255461160393281 0.251653185466633 0.238923094881005 0.244032381128916 0.247888380688342 0.256186034414868 0.244971696158385 0.244167012326474 0.261550909150702 0.252014111037388 0.246398894369228 0.242728418204427 0.248247909212755 0.2433888332455 0.246844147891541 0.238923094881005 0.265523040476403 0.247698006740483 0.240542416071002 2 2|0 -|/ 13086367 13088145 13087389.333 13086167 13088476 - gene protein_coding_gene FALSE TRUE AT2G30695.1|AT2G30695.2 similar to Os01g0894700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045071.1); similar to P0696G06.13 [Oryza sativa (japonica cultivar-group)] (GB:BAC06256.1); similar to Os09g0515400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063667.1) 0.15329737359493 1.19546092652446 0.264566139763821 1 1.46053009838409 10.0752142296235 0.15329737359493 0.157845208922932
AT2G05710_at 11.0806636094 11.2189565913430 11.5644947068784 11.5934422802771 10.8218851575484 10.7013686616314 11.2229926849123 11.2691881254464 10.2673236829028 10.6683606012271 10.5635909213466 10.5890833618277 10.4878205124884 10.439427459961 10.3923404555367 10.5332506501671 10.7970232703014 10.9715536157548 10.2603761996262 0.0779725876718514 0.07717465271365 0.0802029664680195 0.0786317742352076 0.078020402105969 0.08053364461468 0.0787885103300991 0.0782306396685781 0.0892686411862998 0.0801299734126621 0.079731181903101 0.0785463902963481 0.078483167754934 0.0784870423518723 0.0819067258954222 0.0780888664837421 0.078573794959547 0.0854437571601822 0.0802378823326848 2 2|0 +|/ 2145507 2146163 2145888.333 2141396 2146675 + gene protein_coding_gene FALSE TRUE AT2G05710.1 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Identical to Aconitate hydratase 2, mitochondrial precursor (EC 4.2.1.3) (Citrate hydro-lyase 2) (Aconitase 2) (ACO2) [Arabidopsis Thaliana] (GB:Q9SIB9;GB:Q8L784); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT4G26970.1); similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:P49608); similar to Putative aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:Q6YZX6); similar to aconitase [Lycopersicon pennellii] (GB:AAP30039.1); contains InterPro domain Aconitase/homoaconitase; (InterPro:IPR012084); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573); contains InterPro domain Aconitate hydratase 1; (InterPro:IPR006249) 0.0852109509063324 1.19312528877219 0.265431745708437 1 1.45805336714625 21.6818480316005 0.0852109509063324 0.0331168734846149
AT3G09880_at 5.73662414929435 6.06474474252845 5.52005780097022 5.38467856872426 5.95909312802255 5.84754180134546 5.354773184891 5.87935512519847 5.88543927584328 5.51563397656224 5.88117321904038 5.73664019351875 5.69218506385981 5.26336380709943 5.64063777804761 5.77549072378948 5.31106604840652 5.20200402378282 5.7762956811361 0.253174397134874 0.253789301396546 0.25119873795001 0.259780608167393 0.255434248895608 0.264351301608838 0.257895254055710 0.264043136904154 0.264172511494841 0.254197413547821 0.262798661161452 0.249987722580406 0.257976393628804 0.264094273103148 0.252680071741545 0.254171294929902 0.271261807541869 0.256653791137876 0.249717622359097 3 3 + 3030840 3031874 3031232.455 3029516 3032261 + gene protein_coding_gene FALSE TRUE AT3G09880.1 ATB' BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime beta); protein phosphatase type 2A regulator Encodes B' regulatory subunit of PP2A (AtB'beta). Identical to Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' beta isoform (PP2A, B' subunit, beta isoform) (AtB' beta) (B'BETA) [Arabidopsis Thaliana] (GB:O04376); similar to ATB' ALPHA (PP2A, B' subunit, alpha isoform), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT5G03470.1); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to Os03g0681800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050908.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.12200050651661 -1.19188617637570 0.265891908788052 1 1.45674075677039 11.3626634384753 -0.12200050651661 0.111297234404887
AT2G26500_at 13.1595340627702 13.2090055651780 12.8923765700667 12.9245887183994 13.0693456915510 12.8037827360624 13.3646683698075 13.4218481768397 13.3376328155477 13.3829516590347 13.8574034200528 13.7222183174276 13.3167885250962 13.5544811748034 13.6101995493943 13.3725794488672 12.9589471025200 13.5887615860532 13.2126831682859 0.068068306185301 0.0659281698528472 0.069076598053294 0.0683562109042012 0.0659281698528472 0.068494970625485 0.0669408531894051 0.0666474796712907 0.0714116337331389 0.0679964620398656 0.0673867809735087 0.0659281698528472 0.06738795898831 0.068609871599092 0.066865954510856 0.0659281698528472 0.0710473974823187 0.069456038983861 0.0674158892677328 2 2 + 11277457 11277764 11277632.636 11277213 11278031 + gene protein_coding_gene FALSE TRUE AT2G26500.1|AT2G26500.2|AT2G26500.3 cytochrome b6f complex subunit (petM), putative similar to unknown [Euphorbia esula] (GB:AAF34768.1); contains InterPro domain PetM of cytochrome b6f complex subunit 7; (InterPro:IPR012595)|similar to unknown [Euphorbia esula] (GB:AAF34768.1) -0.0898287191957818 -1.19185831707707 0.265902262239552 1 1.45671125581035 26.5100245387425 -0.0898287191957818 0.0481074117122307
AT4G27800_at 11.2952752199593 11.121791900544 11.3825153425560 11.1961144986343 11.4771426256631 11.2138591257781 11.1855732074908 11.0133945418457 11.2643104945708 11.2672293752905 11.2475660129169 11.1584684362734 11.2662207207914 11.3230372539461 11.1004964121187 11.3725769327872 11.3321854747106 11.3627747755768 11.1754710987687 0.0607770583190432 0.0600078910672886 0.061708994002702 0.0613475287987399 0.0600307534408246 0.0617471840893298 0.0596828722785279 0.0617702369151164 0.0660837980853039 0.0622393160088935 0.0615840493941822 0.0593119000849906 0.0593142981260371 0.0619164337807523 0.0606400438005871 0.0596133675998514 0.0622703629108518 0.0594137345615173 0.0605950138525413 4 4|0 -|/ 13852066 13853256 13852572.9 13851868 13854197 - gene protein_coding_gene FALSE TRUE AT4G27800.1|AT4G27800.2|AT4G27800.3 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) Identical to Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) (PPH1) [Arabidopsis Thaliana] (GB:P49599;GB:Q9M0J6;GB:Q9STP6); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G43900.1); similar to protein phosphatase homolog (GB:AAA92889.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932)|Identical to Protein phosphatase 2C PPH1 (EC 3.1.3.16) (PP2C) (PPH1) [Arabidopsis Thaliana] (GB:P49599;GB:Q9M0J6;GB:Q9STP6); similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT4G31860.1); similar to protein phosphatase homolog (GB:AAA92889.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0990723051056852 1.19143957873476 0.266057919123885 1 1.45626789984671 22.4887513454423 0.0990723051056852 0.0700402127030648
AT3G28900_at 8.194859000227 8.15103657086307 7.41321058182637 7.32601859365556 7.37746601955407 7.42347257849456 7.49043444270849 7.74931608649886 7.34843645008703 7.1628097271423 7.1737022967279 8.64379195448631 7.39158043867372 7.52395500728656 8.81660974501647 7.02212391617819 7.06143062675544 6.86731748899777 7.18175106190112 0.186617192810155 0.187415951875644 0.196594798544551 0.193852471534029 0.199564042055827 0.191473780002659 0.195849625894942 0.197304997652748 0.197593176179331 0.189705252028800 0.200385416526782 0.186617192810155 0.195900613359443 0.198846879887562 0.195844264013132 0.194542687499037 0.204441577504325 0.196130590805587 0.194227986227251 3 3|0 -|/ 10904168 10905626 10904955 10903884 10905695 - gene protein_coding_gene FALSE TRUE AT3G28900.1 60S ribosomal protein L34 (RPL34C) Identical to 60S ribosomal protein L34-3 (RPL34C) [Arabidopsis Thaliana] (GB:Q9LJW6); similar to RPL34 (RIBOSOMAL PROTEIN L34), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G69620.1); similar to 60S ribosomal protein L34, putative [Solanum demissum] (GB:AAT39969.1); similar to 60S ribosomal protein L34 (GB:P41098); contains InterPro domain Ribosomal protein L34e; (InterPro:IPR008195) -0.089902363568284 -1.19077297088438 0.266305869528566 1 1.45556232396902 15.0375082412162 -0.089902363568284 0.0485353261152417
AT1G31600_at 6.7676371288094 6.35446192699206 6.52188285163392 6.07536514002927 7.24577808789197 6.30745723938895 6.86856405803217 6.25335879527559 5.79026238012568 6.3287743361813 5.9279611732664 5.84812976746428 5.51068534663733 6.10671032905136 5.48069623626262 6.48982467369976 6.18975569754158 5.82810633236124 6.77032741496642 0.237082405122429 0.227401988149435 0.229207875769372 0.230621651686653 0.220656610150554 0.235430000576295 0.226681709854622 0.222652878141037 0.240264024475913 0.227648897953617 0.226145434790847 0.227165745544887 0.227625831413418 0.220656610150554 0.228231649447446 0.220656610150554 0.232903632506350 0.256204099604401 0.230136140491226 1 1 - 11313693 11314202 11313972.222 11312942 11316454 - gene protein_coding_gene FALSE TRUE AT1G31600.1|AT1G31600.2|AT1G31600.3 oxidoreductase, 2OG-Fe(II) oxygenase family protein similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02485.1); similar to OSJNBa0041A02.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41869.2); similar to 2-Oxoglutarate-and iron-dependent dioxygenase-related proteins (ISS) [Ostreococcus tauri] (GB:CAL55675.1); similar to Os04g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053775.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to oxidoreductase, 2OG-Fe(II) oxygenase family protein [Arabidopsis thaliana] (TAIR:AT4G02485.1); similar to OSJNBa0041A02.16 [Oryza sativa (japonica cultivar-group)] (GB:CAD41869.2); similar to 2-Oxoglutarate-and iron-dependent dioxygenase-related proteins (ISS) [Ostreococcus tauri] (GB:CAL55675.1); similar to Os04g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053775.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.198552831715085 -1.19059269098407 0.266372958537635 1 1.45537155224243 12.6589073559867 -0.198552831715085 0.220874660787038
AT2G13560_at 10.6871591623289 10.7589872324537 10.7994008084072 10.7610417198177 10.7260468878769 10.4921071149814 10.4440395421629 10.4659687105216 10.4817904659601 10.7368583841299 10.9391505141169 10.8403913314041 10.6475176107131 10.7216993369802 10.5256029916732 10.7321447304973 10.4229795888097 10.4284874291904 10.5420960527748 0.0988765480984574 0.0972187786525505 0.098761665563622 0.100314016100294 0.100420378315101 0.10130790004207 0.0981144783812687 0.100082149650006 0.10420510397519 0.0972187786525505 0.0985367007503866 0.0972187786525505 0.0996966945623043 0.100966216856868 0.100749666404647 0.0972187786525505 0.111264775357885 0.0996694916832279 0.0999236782844338 2 2|0 +|/ 5660358 5662153 5661273.333 5657046 5662402 + gene protein_coding_gene FALSE TRUE AT2G13560.1 malate oxidoreductase, putative similar to malate oxidoreductase, putative [Arabidopsis thaliana] (TAIR:AT4G00570.1); similar to NAD-dependent malic enzyme 62 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37221); similar to NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37225); similar to NAD-dependent malic enzyme 65 kDa isoform, mitochondrial precursor (NAD-ME) (GB:P37224); contains InterPro domain Malic enzyme, NAD-binding; (InterPro:IPR012302); contains InterPro domain Malic enzyme, N-terminal; (InterPro:IPR012301); contains InterPro domain Malic oxidoreductase; (InterPro:IPR001891) 0.0879710974777612 1.19051330366891 0.266402505950516 1 1.45528755111477 21.2639247269661 0.0879710974777612 0.0430344177507282
AT4G18240_at 9.88752065587299 9.74134984656075 9.82274235547102 9.6913833585008 10.3202090386354 9.86639492524577 10.1500877142321 9.64259870656393 9.36731082487184 9.53754696423636 9.62596395654808 9.44625140511088 9.53211810030652 9.66806456425316 9.42726563770144 9.6260956152303 9.71952642600357 9.6568622895586 9.29400045518469 0.110327400407371 0.106679887558929 0.107131315775101 0.109137123413674 0.110146137719160 0.106679887558929 0.109992259926985 0.107107464871972 0.119906430102007 0.109435640980546 0.106795012319147 0.106679887558929 0.115218266677186 0.107155953591014 0.112268982602313 0.107546179581459 0.128474716627620 0.113991439438959 0.109110836587214 4 4|0 +|/ 10086133 10087027 10086551 10082119 10087214 + gene protein_coding_gene FALSE TRUE AT4G18240.1 starch synthase-related protein similar to ATSS3 (STARCH SYNTHASE 3), starch synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G11720.1); similar to starch synthase IV [Triticum aestivum] (GB:ABD64538.1); similar to starch synthase isoform IV [Triticum aestivum] (GB:AAK97773.1); similar to starch synthase, isoform V [Vigna unguiculata] (GB:CAB40375.1); contains InterPro domain Starch synthase catalytic region; (InterPro:IPR013534); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Glycogen/starch synthases, ADP-glucose type; (InterPro:IPR011835); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.128971136615295 1.19033067083907 0.266470490785994 1 1.45509431875947 19.383979782187 0.128971136615295 0.122626470545780
AT2G30800_at 4.45105080490277 4.46068845387213 4.62606312055325 4.48440674358237 5.13352977838542 4.65481321927571 4.71493047811507 4.52881392261436 4.72007218714377 4.69383893171587 4.75101631024591 5.12109984274406 4.71085760771648 4.73648335201927 4.77868939527686 4.75351260186374 4.9506506857804 4.63162958189512 4.89364993101958 0.228250968766906 0.233042910227492 0.234675772518360 0.223852479004656 0.232966750284405 0.232809166892372 0.231601537315673 0.224371143833592 0.239021702364162 0.2268629005979 0.231711960654241 0.225073516075754 0.22420148006376 0.240250319020186 0.222063593812891 0.221942772996991 0.233810618073263 0.222762158081509 0.222711271508062 2 2 - 13127722 13128222 13127969.909 13127430 13133847 - gene protein_coding_gene FALSE TRUE AT2G30800.1 HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM); ATP binding / helicase/ nucleic acid binding Has RNA or DNA helicase activity and expressed specifically in tapetum and vascular tissue. First identified member of a new group of the mle helicase group of the DEAH family. similar to NIH (NUCLEAR DEIH-BOXHELICASE) [Arabidopsis thaliana] (TAIR:AT1G06670.1); similar to Os01g0767700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044362.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL52525.1); similar to putative RNA helicase A (GB:AAB01660.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.110443853069716 1.18899334258910 0.266968740853005 1 1.45367999958401 9.4185017845722 0.110443853069716 0.0922185440742617
AT4G35980_at 5.69604740093527 6.43857179688086 5.84634489030537 6.21267336588796 6.16383565744711 6.28940372371568 6.0450547843249 6.50858591272394 5.53478098263523 5.44585691862666 6.01614840573649 6.06736444738979 5.98938771596268 6.29112253055469 5.67407458245386 6.33181519288952 5.57114531189827 5.37458629969623 5.68359515324299 0.221669096769322 0.222219389429023 0.226139360147648 0.220071261757969 0.217093740466925 0.241500129279844 0.217093740466925 0.221128772075813 0.227599539606756 0.222070480327353 0.217093740466925 0.221424541874324 0.223722136139210 0.221446447635226 0.219198282909269 0.221573482597008 0.236326485838756 0.226416025505826 0.219495973519379 4 4 - 17030819 17031101 17030948.273 17030575 17031699 - gene protein_coding_gene FALSE TRUE AT4G35980.1 similar to hypothetical protein MtrDRAFT_AC148217g8v1 [Medicago truncatula] (GB:ABE88169.1); contains domain gb def: Hypothetical protein (PTHR21068:SF3); contains domain FAMILY NOT NAMED (PTHR21068) 0.157855322471927 1.18836709733247 0.267202322882512 1 1.45301807872243 11.8846646476898 0.157855322471927 0.165642105908081
AT3G26370_at 6.92076241717765 7.31917575373134 6.84744169841762 6.89526241595412 7.02281304746494 6.63760970553686 6.78655590261253 6.75826049370647 5.1840740804431 6.26873569972833 6.68186763998984 6.49704402133845 5.95726906402555 5.73406847785552 6.15352713210995 6.19757028815332 6.13383890134015 5.72304017606302 5.98883430851772 0.24284900063443 0.239814301653707 0.239014767409588 0.235631372813389 0.236705593199543 0.251739060605725 0.235718577596675 0.238960545099982 0.26044759517322 0.243059002333769 0.252028488838465 0.242230293111323 0.236413495111700 0.235631372813389 0.236057074192944 0.244150618452952 0.248097550634004 0.243649542873596 0.238538855148288 3 0|3 /|+ 9660364 9660948 9660567.111 9657981 9661165 + gene protein_coding_gene FALSE TRUE AT3G26370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65470.1); similar to Os02g0158800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045959.1); similar to putative axi 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD46055.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.112744962374742 1.18827561964975 0.267236456912862 1 1.45292140997085 12.8728149670781 0.112744962374742 0.0963841854750926
AT1G79730_at 7.17437803480085 7.02009609155127 6.86789986591649 6.70054803083213 7.42150113482951 6.4788349554154 6.98911455580182 6.59193744816255 7.0615153493191 7.09395888510046 6.68266650518257 6.82530526672103 7.0373991280498 6.85105819596317 6.53840068164655 7.14138802790037 6.72335330107127 6.90326301174777 7.14178159015214 0.195959544691521 0.188178094268283 0.195907217784783 0.186586884151554 0.188119418462205 0.212057694738711 0.188418823568321 0.185743990852516 0.200999558438787 0.189127064531035 0.190702000090886 0.189916016251092 0.187130501024001 0.193767658730521 0.183763665166637 0.184333070758493 0.191851729116647 0.19571957115165 0.189918430783723 1 1|0 -|/ 30005698 30007360 30006434.222 30005431 30008898 - gene protein_coding_gene FALSE TRUE AT1G79730.1 ELF7 (EARLY FLOWERING 7) Encodes a PAF1 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast PAF1 is a component of a five-member complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G13340.1); similar to hypothetical protein DDBDRAFT_0190242 [Dictyostelium discoideum AX4] (GB:XP_645948.1); similar to Os08g0157100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061029.1); contains InterPro domain RNA polymerase II associated, Paf1; (InterPro:IPR007133) -0.168958272951333 -1.18759053472295 0.267492202870955 1 1.45219761225602 13.8740085344850 -0.168958272951333 0.181350944998234
AT4G00150_at 6.42671712665856 6.57287780070882 6.37030789415683 6.41711403689413 6.78088904125841 6.69185209895578 7.48977986947119 7.28534418452754 5.51035940890015 6.08025279371155 5.99742817950244 6.48002802660128 6.46835263117066 6.58216453593472 6.41169747606987 6.74352777587018 6.61877628531004 6.25204377831759 6.07231215878189 0.195583467873597 0.198281283824715 0.202289371326478 0.194671236931541 0.193729848984682 0.193343340780274 0.192050994236864 0.20144224923368 0.223534323119543 0.194517319160226 0.196269250380389 0.19057886059252 0.194635524263296 0.195947155805389 0.196928050761882 0.192059207969188 0.211832183563767 0.201669450606339 0.202201672530703 4 4 - 57431 57978 57748.455 57199 59286 - gene protein_coding_gene FALSE TRUE AT4G00150.1 scarecrow-like transcription factor 6 (SCL6) similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G45160.1); similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G60630.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85338.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.0889859523869982 1.18665469105669 0.267841880768893 1 1.45120935267740 12.9203071515264 0.0889859523869982 0.0468448727103664
AT1G53450_at 5.81780592782633 6.25553889653944 6.53284110045949 6.18260718521149 6.99808138778448 6.8843788843038 6.22368542246213 6.20512165347556 5.21054270498265 5.48019092120218 4.35177682111109 4.30501534322862 5.34175932725761 4.78622984420798 4.35822748845455 5.1891376342677 5.26746682188979 4.6418049025312 5.90619337673092 0.216166207219494 0.212274887178116 0.214493017038677 0.215742150625670 0.210713059219049 0.210713059219049 0.22083324082202 0.221575684565019 0.245846439351733 0.217876363638286 0.218875638040170 0.214947636292816 0.211994144768332 0.224323609803381 0.221518446668605 0.211858803541318 0.244423273779249 0.227253669872339 0.215633017453302 1 1|0 -|/ 19955432 19956301 19955894.889 19954674 19957776 - gene protein_coding_gene FALSE TRUE AT1G53450.1|AT1G53450.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G14830.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS72350.1); similar to Os01g0729900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044138.1) -0.114096281869697 -1.18632916652928 0.267963600256584 1 1.45086572217774 11.5437506941781 -0.114096281869697 0.0990421368556783
AT4G14615_at 8.98845888391867 9.10703506323087 8.94829612830692 8.90723794195598 9.3472395572717 8.95850655244787 9.36648917782136 9.36219828966693 8.9054305644929 9.3666744423657 9.08201129617499 9.13349750843604 9.1507980415307 9.15643112985962 9.15236865281242 9.13888520982893 8.861352665549 8.98794339711772 9.07316423259682 0.115399104109688 0.110041521072152 0.111336385457464 0.116647242767692 0.109899806854252 0.118452503113415 0.106694587473721 0.107591488572016 0.115967561578426 0.109435105507483 0.108050471176578 0.108993568229775 0.111179780282584 0.112823504239318 0.111246472303686 0.110080354773774 0.120489757334982 0.115998598827458 0.114069291684696 4 4|0 +|/ 8383869 8384778 8384278.111 8383759 8385074 + gene protein_coding_gene FALSE TRUE AT4G14615.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52825.1); similar to Os07g0181800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059047.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83054.1) -0.0989520337426488 -1.18624034689120 0.267996819344564 1 1.45077197364513 18.2221830664019 -0.0989520337426488 0.0706940154281248
AT4G00585_at 8.4042784457946 8.48933166482356 8.29836869083986 8.38962922008956 8.06855461842551 8.36599890671548 8.0524969420694 8.18141103150972 7.76168607347793 7.77111829245985 8.04926861389642 8.24054559921718 7.61045092306518 7.86264140630531 8.2573523379008 7.61431554198465 7.65197976663385 7.85546179230885 7.57711681199527 0.142031356111373 0.140867072056137 0.152974551499216 0.152571071726803 0.146863945842163 0.143185631729724 0.141116058762799 0.150430908793247 0.147180372613124 0.143080073117349 0.141926331955545 0.140621913375899 0.148694141593545 0.143605993096942 0.146644538382973 0.138328301990187 0.140352538790946 0.143436543956209 0.155481706227035 4 4|0 -|/ 251201 252227 251962.333 250955 252598 - gene protein_coding_gene FALSE TRUE AT4G00585.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD28446.1) 0.0941016381606472 1.18565684285568 0.268215136846526 1 1.45015620991399 16.0792882185210 0.0941016381606472 0.0601111499905758
AT1G75460_at 10.8921544502430 11.1380199480724 11.2058737565753 11.2104115817380 10.9592092228228 11.0886145585371 11.6944710418922 11.854329969689 11.6981429097273 11.7210736293723 11.8772573541913 11.6409702668179 11.7391420190903 11.8740159675343 11.5162906838163 11.9360716977923 11.5678736930674 11.8313211872266 11.5411735073331 0.07935544297783 0.0789551753698856 0.078491967674082 0.0795426400435727 0.0771794708876751 0.0817261257400781 0.0777510374788529 0.0783260901246724 0.0824392121265345 0.0796151387917506 0.0789244049615635 0.0776257000285926 0.081988644202784 0.0770124208625984 0.0842156856066036 0.0767124750736715 0.0833393386105502 0.0825762736008662 0.0785084995304154 1 1 + 28331933 28332428 28332097.091 28331547 28333425 + gene protein_coding_gene FALSE TRUE AT1G75460.1 ATP-dependent protease La (LON) domain-containing protein similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19740.1); similar to Os07g0509700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059749.1); similar to hypothetical protein all4335 [Nostoc sp. PCC 7120] (GB:NP_488375.1); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111) -0.09215603133735 -1.18538958167977 0.268315180731026 1 1.44987424296834 22.9560511699477 -0.09215603133735 0.0554777335391891
AT1G73650_at 10.0346021412879 10.3473503329860 10.5172823904491 10.5528002027661 10.4706320805990 10.1390032957479 10.0380753915817 10.4135089524970 9.75722822272873 9.57756293885175 9.57708087435917 9.4842078837387 9.85522911436803 9.76283936291536 9.12419186547565 9.72520835985762 9.73023379966654 9.50542976456082 9.3911109635433 0.100981934719177 0.090491655905972 0.0978896105947142 0.0937519826445362 0.0957767055846404 0.094037128221043 0.101832055545389 0.0947037026039525 0.0994894525278716 0.0922226062479214 0.0923203461048451 0.0913364086245268 0.0943930962505233 0.100591589790812 0.099401139589972 0.090491655905972 0.106750722100373 0.097058958191210 0.0913368579133826 1 1|0 -|/ 27692218 27693106 27692616.857 27691784 27693968 - gene protein_coding_gene FALSE TRUE AT1G73650.1|AT1G73650.2|AT1G73650.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18180.1); similar to hypothetical protein MtrDRAFT_AC139526g26v1 [Medicago truncatula] (GB:ABE80157.1); contains InterPro domain Protein of unknown function DUF1295; (InterPro:IPR010721); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.115898603772735 1.18473469173241 0.268560454182621 1 1.44918350457769 19.8995835167355 0.115898603772735 0.102380659617479
AT2G22250_at 4.4465487401075 5.35543885492338 4.64907532273089 4.81207860301848 5.23993153985886 3.78812207513542 5.43897417374687 5.76592358957723 5.59949932660863 5.70264454764764 5.82382833091404 6.10413174568805 5.92522584426066 5.86203260448829 5.29453434136127 5.42597476156643 5.24616792906807 5.58487273707307 5.34580074601451 0.231281892741252 0.228009145119207 0.243203139687046 0.237212359377908 0.23680005760998 0.263510040368434 0.228009145119207 0.229532842484328 0.242695467198036 0.228009145119207 0.230803208028828 0.237391894606866 0.233352314552257 0.235057638026086 0.228009145119207 0.238129860229686 0.247450830346651 0.242327043240868 0.235623534070784 2 2|0 -|/ 9465112 9466048 9465582.7 9464890 9467999 - gene protein_coding_gene FALSE TRUE AT2G22250.1|AT2G22250.2|AT2G22250.3 AAT/ATAAT/MEE17 (maternal effect embryo arrest 17); aspartate transaminase similar to aminotransferase class I and II family protein [Arabidopsis thaliana] (TAIR:AT1G77670.1); similar to aspartate aminotransferase [Pinus pinaster] (GB:CAF31327.1); similar to Os01g0871300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044936.1); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.260194145511972 -1.18362256732448 0.268977392144786 1 1.44801110914491 10.5408420675004 -0.260194145511972 0.30308279970218
AT2G43090_at 9.4106250357413 9.5236959036466 9.33055160115198 9.38553006925176 9.54076003627964 9.14610030855741 9.34713202949004 9.67606229995132 9.46278569591063 9.00294716575063 9.57463012168334 9.6057291451346 9.4655854130205 9.56059084509218 9.95734465595647 9.49706659468705 8.92957871711799 9.32660034713403 8.92991695590869 0.110360229307862 0.105868303119453 0.110453664622580 0.112227569544811 0.106445511601785 0.109433797838107 0.105778286833978 0.103585106614828 0.114790121720817 0.107903073371304 0.107462618970545 0.103585106614828 0.103585106614828 0.108975456232093 0.113670672743248 0.103947167049385 0.119513043286985 0.103585106614828 0.103585106614828 2 2 + 17926213 17926548 17926340.273 17926004 17927506 + gene protein_coding_gene FALSE TRUE AT2G43090.1 aconitase C-terminal domain-containing protein similar to aconitase C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G58990.1); similar to putative protein [Oryza sativa] (GB:CAC39061.1); similar to Os02g0655300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047617.1); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573) 0.109557072028917 1.18357128457574 0.268996630865050 1 1.44795706557012 18.7308191617595 0.109557072028917 0.0915325161557772
AT1G14610_at 8.43235748600861 8.39690327337867 8.2632577882432 8.19782797140677 8.2601692207215 8.22211115591023 8.53717750661293 8.51817634029501 8.10130380200976 8.45491446182252 8.42076691924767 8.9832585458787 8.37277968518903 8.3086511978547 8.66612778569925 8.33340882862465 8.38818153538294 8.21580691576135 8.60678918653964 0.140029073446250 0.147353467818628 0.149083522195887 0.142662507916332 0.150669754773738 0.142141693844745 0.136658405371211 0.150721686236518 0.148695789646437 0.140564106712479 0.144004938332837 0.138795264891923 0.136665070529235 0.146237329167111 0.14525486059202 0.142943744847294 0.143872105429502 0.142212106255015 0.139538413884733 1 1|0 -|/ 5008519 5009465 5009014.444 5008239 5014528 - gene protein_coding_gene FALSE TRUE AT1G14610.1 TWN2 (TWIN 2); ATP binding / aminoacyl-tRNA ligase Required for proper proliferation of basal cells. Identical to Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS) (VALRS) [Arabidopsis Thaliana] (GB:P93736;GB:Q8W4A8;GB:Q9MA22); similar to EMB2247 (EMBRYO DEFECTIVE 2247), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G16715.1); similar to Valyl-tRNA synthetase, putative [Oryza sativa (japonica cultivar-group)] (GB:ABF95812.1); similar to Valyl-tRNA synthetase, putative [Oryza sativa (japonica cultivar-group)] (GB:AAP54522.1); similar to Valyl-tRNA synthetase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF93604.1); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Valyl-tRNA synthetase, class Ia; (InterPro:IPR002303); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain ValRS-IleRS-LeuRS editing; (InterPro:IPR009008) -0.0809292954612792 -1.18260769806669 0.269358328553861 1 1.44694190607762 16.7778935062365 -0.0809292954612792 0.0148338463931695
AT4G32680_at 4.64529581705365 5.53205221290498 5.01399434803844 5.25637823437954 4.98522953867315 4.85921686727136 4.3412656843349 5.16220528702074 4.89745825617757 4.41298408813524 4.01246125552197 3.98316447789249 4.19855211789038 4.32411585405149 3.58352581050551 4.42075819961605 4.02904056020212 4.37688797029457 4.51757609996749 0.24218824477728 0.238370422922613 0.246536291567709 0.248603393571643 0.239342085064170 0.250792837665676 0.237783645907398 0.239120487221771 0.246171438894428 0.240535988756195 0.236205814380532 0.246785045603468 0.238034455782778 0.243349586805074 0.244027999286620 0.236737458803232 0.259332720422093 0.240067088265597 0.248139575304932 4 4 - 15763489 15764000 15763770.091 15763242 15765119 - gene protein_coding_gene FALSE TRUE AT4G32680.1 similar to Unknown protein [Medicago truncatula] (GB:ABE84119.1) -0.192388101958944 -1.18251347722671 0.269393717091239 1 1.44684267315462 9.3371561297964 -0.192388101958944 0.214399844304774
AT4G32560_at 5.17550922990449 5.2735684806435 4.77497596383096 4.86261880302416 5.2737070138218 5.13155593407306 4.83575268507379 5.07048738512611 4.41569043641431 4.52133911698743 4.32150303500060 4.18442355934534 4.62885086147444 4.52351155145496 4.3291934146159 4.39078754606791 4.42584419338195 4.19701084194912 4.49875122329788 0.205354305200391 0.20906651488775 0.21846108414295 0.203169660738243 0.213534813449695 0.207805328086748 0.214242934992584 0.215807085027444 0.225995478460076 0.209440722242807 0.205896372786281 0.214078650592707 0.217686882638293 0.218938004046932 0.217164158588122 0.209969448948615 0.210255115320956 0.211648409559740 0.205408344663739 4 4|0 +|/ 15714522 15716015 15715157.333 15713742 15716665 + gene protein_coding_gene FALSE TRUE AT4G32560.1|AT4G32560.2|AT4G32560.3 paramyosin-related similar to MGC89046 protein [Xenopus tropicalis] (GB:NP_001008173.1); contains domain FIDIPIDINE (PTHR16441)|similar to coiled-coil domain containing 93 [Gallus gallus] (GB:NP_001026433.1); contains domain FIDIPIDINE (PTHR16441) -0.0907839916607054 -1.18200603660040 0.269584372479077 1 1.44630833357445 9.47663904575947 -0.0907839916607054 0.0526621557567688
AT4G26620_at 7.84059343363705 7.84626801499769 7.5307608389837 7.39541082628633 7.54361479280728 7.72971466871112 6.98867839770866 7.47125168609449 7.45648749702747 6.91290042703822 6.75138180098675 6.66904534040024 6.65301598221505 7.41144356362155 6.57658384271414 7.27685135867713 7.08262551356303 7.00812991400421 7.11399238999225 0.177113246661036 0.176989822239743 0.184079703330426 0.194935563358477 0.170613069209568 0.182292965539304 0.181201273898791 0.171247415868770 0.183220186320418 0.184102458230115 0.175416301142114 0.180007575263168 0.174664114445995 0.175511139253840 0.188901196683045 0.171451791629826 0.174605255784621 0.169598525768384 0.176007574285771 4 4 - 13427615 13428229 13427952.636 13427417 13429970 - gene protein_coding_gene FALSE TRUE AT4G26620.1 sucrase-related similar to sucrase-related [Arabidopsis thaliana] (TAIR:AT5G55900.1); similar to Clostridium pasteurianum ferredoxin homolog [Solanum tuberosum] (GB:AAB33256.1); similar to Os02g0725100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047981.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Sucraseferredoxin-like; (InterPro:IPR009737); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.109657354121122 -1.17868295657232 0.270835632830623 1 1.44281303977817 14.588167300341 -0.109657354121122 0.0925255123430198
AT4G16170_at 6.8604196691118 6.89435962657501 6.63140086362439 6.37151408130404 7.1080665099757 6.91215842273518 6.7900483949593 6.52442070669673 6.6916336002809 6.21653643262272 6.48043760315957 6.28308934982038 6.39317451193299 6.28288107330921 6.43273407193526 6.05665585072928 6.19128982039697 6.1053545531692 6.48728647316487 0.175290722628141 0.172557537592582 0.18049556535959 0.186438541915422 0.173444359503309 0.168512181895368 0.170403692005268 0.169005236239137 0.169962989329130 0.178320233807285 0.175719124400816 0.175877363049790 0.175600136122549 0.173762242296737 0.185614969219689 0.175164403225791 0.187690337441472 0.184986546927860 0.180681827628890 4 4 - 9165399 9166273 9165839.545 9165289 9167452 - gene protein_coding_gene FALSE TRUE AT4G16170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28720.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95572.1) -0.0992385971543854 -1.17677795200683 0.27155506192847 1 1.44081239887933 13.1332256708708 -0.0992385971543854 0.0729361475022229
AT2G37040_at 5.5977155313462 5.74115983757739 5.66164689648855 6.07306939144241 5.46984845373935 5.47115755550317 6.34933378861338 6.5784660627651 6.52189378102922 6.59577983166494 7.1988119368507 8.23538245800819 7.03144792986486 7.42713143197864 7.49597590283252 7.43253216341654 6.81818119444639 6.95901378247298 7.03091897987817 0.179990578621907 0.182667512142955 0.180380052702526 0.170803963269060 0.1827964299935 0.178279368131965 0.182367651787095 0.181709988830077 0.181428567078170 0.177858890706206 0.174318355514046 0.171705201825131 0.177597473375275 0.179367867091248 0.186701652395345 0.173191598877773 0.177701911828071 0.175032521114771 0.177075287712824 2 2 - 15564683 15565206 15564967.273 15564455 15567442 - gene protein_coding_gene FALSE TRUE AT2G37040.1 PAL1 (PHE AMMONIA LYASE 1); phenylalanine ammonia-lyase encodes a protein similar to phenylalanine ammonia-lyase Identical to Phenylalanine ammonia-lyase 1 (EC 4.3.1.5) (PAL1) [Arabidopsis Thaliana] (GB:P35510;GB:Q94AN1;GB:Q9ZQD6); similar to PAL2 (phenylalanine ammonia-lyase 2), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT3G53260.1); similar to PAL3 (PHENYL ALANINE AMMONIA-LYASE 3), phenylalanine ammonia-lyase [Arabidopsis thaliana] (TAIR:AT5G04230.1); similar to phenylalanine ammonia-lyase, putative [Arabidopsis thaliana] (TAIR:AT3G10340.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22053.1); similar to phenylalanine ammonia-lyase [Brassica napus] (GB:AAX22055.1); similar to Phenylalanine ammonia-lyase (GB:P45730); contains InterPro domain Phenylalanine ammonia-lyase; (InterPro:IPR005922); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain Phenylalanine/histidine ammonia-lyase; (InterPro:IPR001106) 0.105436919172132 1.17627344851996 0.271745848470307 1 1.44028294548822 12.8883032551051 0.105436919172132 0.0851928356151878
AT3G08890_at 5.26319743190933 4.98819128388878 4.58029260841678 4.51536129791056 4.53522079661728 4.83976544721241 5.12698175326283 5.43328761347972 4.31586573704242 4.34694370859775 5.2170181003644 5.00014567070531 4.65499603137311 4.45367999086098 4.84066741338545 4.41983557317474 4.47305689229216 5.00156717455892 4.50005050298669 0.213638420793542 0.215549910778157 0.213892563071217 0.218127129748957 0.215410042264982 0.220284079888481 0.215288426904366 0.216903823100054 0.223568954783798 0.21497634885281 0.212421261752802 0.217174187719222 0.219220910279373 0.223161489004275 0.229075371448302 0.216964647460799 0.22080419752221 0.224033052130198 0.218833773577075 3 3|0 +|/ 2706724 2707665 2707348.333 2706638 2708753 + gene protein_coding_gene FALSE TRUE AT3G08890.1|AT3G08890.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G37070.1); similar to Protein of unknown function, DUF538 [Medicago truncatula] (GB:ABE91533.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) -0.107626805066069 -1.17585013729353 0.271906014734469 1 1.43983882174876 9.48290769844471 -0.107626805066069 0.0893228953382644
AT3G51310_at 8.73000583253195 8.8323862498204 8.43323823063 8.57106168730966 9.12964077507454 8.55321845949003 8.86202155924562 8.77637373071622 8.49808672048436 8.84333266825864 8.51511146028419 8.80515713326226 8.65994902666424 8.66686289529345 8.4236715376467 8.52259667971625 8.61035008492722 8.70018287756826 8.81211340418312 0.116341220656193 0.11764912616343 0.131472944901688 0.119833061898488 0.120588227780251 0.119968212717509 0.119014644563169 0.116739967582923 0.127475784049688 0.119074033893352 0.118971548115441 0.118443326146145 0.119787598248224 0.119599898275851 0.125066461483938 0.123522659893266 0.126078405525069 0.123069000154056 0.120148229002021 3 3|0 -|/ 19055715 19056426 19056112.25 19055502 19060361 - gene protein_coding_gene FALSE TRUE AT3G51310.1 vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75850.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17790.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF93242.1); similar to Os03g0801600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051593.1); contains InterPro domain Vacuolar protein sorting-associated protein 35; (InterPro:IPR005378) -0.116633053670441 -1.17564973202004 0.271981867851945 1 1.43962860221813 17.4014080537168 -0.116633053670441 0.105133420344318
AT1G09660_at 4.61932326192633 4.60420174614128 4.52826446786960 4.47351964081213 5.47367441870745 4.94097228524278 5.40485275485359 5.1107251911525 4.58996169928867 4.55599487456107 4.48113189435326 4.31095630330259 4.65424157184474 4.78817997055313 4.1893634492944 4.40596592748380 4.55539090833532 4.44151381180545 4.74873396066472 0.168344687301711 0.163849831684301 0.165211043161949 0.166304558702564 0.165591352304587 0.167973655464746 0.167625708267865 0.163794483034992 0.173136529791185 0.166053598314975 0.165224031327815 0.164990659608810 0.166242222996824 0.164273684919349 0.167261786909639 0.165475748033161 0.166936607422287 0.170492893362479 0.166023613973246 1 1|0 -|/ 3128048 3130769 3129129.55 3127773 3131096 - gene protein_coding_gene FALSE TRUE AT1G09660.1|AT1G09660.2 KH domain-containing quaking protein, putative similar to KH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G26480.1); similar to Os05g0419500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055572.1); similar to KH [Medicago truncatula] (GB:ABE91933.1); similar to Os01g0886300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045029.1); contains InterPro domain KH; (InterPro:IPR004087) -0.116944283621832 -1.17501890163757 0.272220748405137 1 1.43896704188290 9.4493949664014 -0.116944283621832 0.105762912863377
AT2G42810_at 7.01143487635653 6.85937113475582 6.83451518729215 6.68226764166963 7.40410698974632 7.33131371390151 6.6100114725257 6.99159399671458 6.8242952338649 6.13924716997406 6.69666043427883 6.2124492391693 6.88435578073654 6.4937134140481 6.34963550116274 6.692601443571 6.89970753600225 6.00013509557401 6.60139530166295 0.193352623457209 0.179431705512869 0.184624086066865 0.188577370876282 0.184368423951200 0.18376395425012 0.186515891296452 0.184831802455084 0.189956178352995 0.188622445168718 0.184464134770259 0.181461055264933 0.178871572115033 0.189734628987077 0.182991427662508 0.180254643367211 0.189400161023468 0.181901906015795 0.188069876940377 2 2|0 -|/ 17819634 17820327 17820025.222 17819012 17823769 - gene protein_coding_gene FALSE TRUE AT2G42810.1|AT2G42810.2 PAPP5/PP5 (PROTEIN PHOSPHATASE 5); phosphoprotein phosphatase/ protein binding / protein serine/threonine phosphatase|PAPP5/PP5 (PROTEIN PHOSPHATASE 5); phosphoprotein phosphatase/ protein binding Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. It localizes to the cytoplasm in darkness and in the nucleus in light. The gene is alternately spliced. This variant does not contain membrane domains.|Encodes a phytochrome-specific type 5 serine/threonine protein phosphatase. It dephosphorylates active Pfr-phytochromes. Controls light signal flux by enhancing phytochrome stability and affinity for a signal transducer. The gene is alternately spliced. This variant is an integral membrane protein localized to the ER and nuclear envelope. similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to TOPP8 (Type one serine/threonine protein phosphatase 8), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT5G27840.2); similar to type 5 protein serine/threonine phosphatase 62 kDa isoform [Lycopersicon esculentum] (GB:AAO26213.1); similar to type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] (GB:AAN64317.1); similar to Os05g0204900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054892.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein phosphatase 5; (InterPro:IPR011236); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Serine/threonine phosphatase, PPP5; (InterPro:IPR013235); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)|similar to TOPP8 (Type one serine/threonine protein phosphatase 8), protein phosphatase type 1 [Arabidopsis thaliana] (TAIR:AT5G27840.2); similar to type 5 protein serine/threonine phosphatase 62 kDa isoform [Lycopersicon esculentum] (GB:AAO26213.1); similar to type 5 serine/threonine phosphatase 55 kDa isoform [Lycopersicon esculentum] (GB:AAN64317.1); similar to Os05g0204900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054892.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Protein phosphatase 5; (InterPro:IPR011236); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Serine/threonine phosphatase, PPP5; (InterPro:IPR013235); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.100979708399061 1.17458996748621 0.272383272853953 1 1.43851735429664 13.4907284803212 0.100979708399061 0.0768500632822583
AT4G28025_at 9.63294397108367 10.0662276931815 9.7900633448934 9.8381531272914 10.1186488122151 9.9954200761755 10.0933398015231 10.6708205055311 10.5966530224980 10.5899091899788 10.4073218185174 10.5440984330682 10.4128767111802 10.5888219011282 10.3442226055683 10.8407423003310 9.95053603206139 10.5604214041154 10.4213860211268 0.116339765799940 0.100823636394138 0.101833750953069 0.111126737604474 0.111607875383996 0.102852419027611 0.111232696730478 0.106649750327097 0.105111704359852 0.105152936706132 0.101538228332087 0.0999925122997098 0.102463755588314 0.104098786799466 0.100469131365392 0.104475758897919 0.127969897563096 0.0999925122997098 0.104326148738161 4 4|0 -|/ 13935842 13937317 13936460.111 13935610 13937514 - gene protein_coding_gene FALSE TRUE AT4G28025.1 similar to hypothetical protein MtrDRAFT_AC157348g23v1 [Medicago truncatula] (GB:ABE86435.1) -0.130057123237163 -1.17452291187942 0.272408687541386 1 1.43844706464191 20.5217586141273 -0.130057123237163 0.127017489801841
AT3G12560_at 6.49902670870894 6.06880713230626 5.89289368473557 5.72531113503351 5.71805097145159 6.09270801769676 5.49636542102113 5.75571485537166 5.44596470797154 5.56985409264685 6.30237668712876 6.39530086352624 6.1889870624057 5.79007185210055 5.64874755921895 6.63932382896706 5.77138640200026 5.64279500983435 6.10849427382635 0.193739386418924 0.184732423437045 0.184889955458463 0.187491583852947 0.187462426005953 0.189723521986439 0.185377479380693 0.195621292780069 0.198949057916157 0.191684502036598 0.194727919237319 0.195005586778453 0.193802590283798 0.187825038263406 0.186908032218687 0.185065972719547 0.205465823448435 0.186528432880081 0.183731835620998 3 0|3 /|- 3982362 3983001 3982644.3 3981991 3985557 - gene protein_coding_gene FALSE TRUE AT3G12560.1 TRFL9 (TRF-LIKE 9); DNA binding Encodes a telomeric DNA-binding protein. similar to TBP1 (TELOMERIC DNA BINDING PROTEIN 1), DNA binding [Arabidopsis thaliana] (TAIR:AT5G13820.1); similar to MYB-like DNA-binding protein [Catharanthus roseus] (GB:CAC19789.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.120765861438425 1.17409883183747 0.272569462314573 1 1.43800259634744 11.7838487489387 0.120765861438425 0.112259378114463
AT1G21700_at 7.29854895117694 7.22927454210038 7.38275094893601 6.88214243264608 7.7708804978146 7.20681252249644 7.34191898198208 7.2116873671872 7.66855216556325 7.66959856190637 7.45902166224483 7.45674173022044 7.25696853810125 7.21879761013665 7.14425906409745 7.31146687497407 7.06798414485674 7.47096377036388 7.48071749755215 0.173333622825977 0.171387500400559 0.171414418214754 0.172550561285534 0.175582440061543 0.188847053011272 0.173422985749788 0.176113836748268 0.178689850835664 0.170992168259996 0.17194481198002 0.167207780394705 0.17222147379575 0.174634190241492 0.171849107978953 0.166701869363442 0.185917155871941 0.171754125688105 0.166613813617708 1 1 - 7620181 7620598 7620366.273 7619990 7624125 - gene protein_coding_gene FALSE TRUE AT1G21700.1 ATSWI3C (Arabidopsis thaliana switching protein 3C); DNA binding a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003). similar to ATSWI3A (Arabidopsis thaliana switching protein 3A), DNA binding [Arabidopsis thaliana] (TAIR:AT2G47620.1); similar to Os11g0183700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065911.1); similar to SWIRM domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96607.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.13386242205227 -1.17402074054666 0.272599076224509 1 1.43792076291853 14.7427844469000 -0.13386242205227 0.132986714395326
AT1G02100_at 7.83066702934663 7.73878643791145 7.91575008604463 7.56181505265552 8.38059224916854 7.9689558041861 7.34797459738709 6.70705223561256 7.21104298779834 6.24914437399905 6.30827607547282 6.47917374262632 6.95328535913515 6.29587671576481 6.09620040124833 6.65793351615528 7.09179276494021 6.51326260142214 6.98466920561183 0.199461624304264 0.196644554381482 0.199993453736326 0.196644554381482 0.21070818557491 0.202851237790390 0.197420065784595 0.204544866620625 0.210221637008104 0.196644554381482 0.208327991345142 0.203445313606001 0.206980013330710 0.198474447814819 0.204435035153013 0.196644554381482 0.209089903858617 0.218217146737347 0.197635503992043 1 1|0 +|/ 390511 391650 391067.25 389812 392816 + gene protein_coding_gene FALSE TRUE AT1G02100.1|AT1G02100.2|AT1G02100.3 leucine carboxyl methyltransferase family protein similar to Os06g0140100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056749.1); similar to hypothetical protein DDBDRAFT_0219323 [Dictyostelium discoideum AX4] (GB:XP_636813.1); contains InterPro domain Leucine carboxyl methyltransferase; (InterPro:IPR007213) 0.142590590454247 1.17365120474211 0.272739247611417 1 1.43753357046707 14.3636628546551 0.142590590454247 0.146222290888549
AT3G12210_at 4.65093234718085 4.81827132900735 5.03155251872083 4.7183501244130 5.65075095229448 5.81685182903417 5.35456909866329 5.82392106875988 5.18211330868096 4.97048094323297 5.05062771213751 5.24557836526492 5.0137388341455 5.1676057525324 5.59887175227804 5.24814102555138 4.80457375924866 4.84509312306336 4.93910203496857 0.226850869141855 0.223422468483229 0.223422468483229 0.228556784781499 0.233392466791456 0.232933103210410 0.226438224576597 0.227909001909025 0.225665074102691 0.228171811899454 0.224743968067093 0.226378917047658 0.223942734785436 0.233385809066387 0.230727502441931 0.228019814898479 0.234329140295951 0.223422468483229 0.223422468483229 3 3|0 +|/ 3894898 3895830 3895291.778 3894785 3896073 + gene protein_coding_gene FALSE TRUE AT3G12210.1|AT3G12210.2 similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG04365.1); contains domain no description (G3D.1.10.340.10); contains domain SUBFAMILY NOT NAMED (PTHR21521:SF2); contains domain FAMILY NOT NAMED (PTHR21521)|similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAG04365.1); similar to Os03g0728600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051148.1); contains domain no description (G3D.1.10.340.10); contains domain SUBFAMILY NOT NAMED (PTHR21521:SF2); contains domain FAMILY NOT NAMED (PTHR21521) 0.116833128389832 1.17350453280671 0.272794899044382 1 1.43737991404505 10.3093220182535 0.116833128389832 0.105829520299388
AT1G69450_at 6.86331569768719 6.66186289017706 7.82294953185735 7.69473428733931 8.04993114261252 7.56496803460912 7.66811632466817 7.59459644713893 6.73058810900915 7.05742710310027 5.82356751573642 5.0358829770051 6.99346875206852 6.92676137303925 4.9381253871374 6.8879963981525 7.415827319735 6.90011621361135 6.40482907058809 0.204087858546704 0.197093082877862 0.208473655808148 0.195386582920712 0.196820366876584 0.195505918493211 0.20269688481087 0.203999695220881 0.20127021148103 0.195864432561902 0.196525407286533 0.195386582920712 0.198923160477120 0.207996428393106 0.196432005159795 0.203940027877897 0.197507134365531 0.200023506441425 0.196455965048013 1 1 - 26110788 26111477 26111179.545 26110783 26113811 - gene protein_coding_gene FALSE TRUE AT1G69450.1 similar to HYP1 (HYPOTHETICAL PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G01100.1); similar to Protein of unknown function DUF221 [Medicago truncatula] (GB:ABE86757.1); similar to Os12g0582800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067142.1); contains InterPro domain Protein of unknown function DUF221; (InterPro:IPR003864) 0.110221528507466 1.17343716762155 0.272820462365458 1 1.43730934543684 14.0381424626578 0.110221528507466 0.0944086980071666
AT2G47380_at 10.7573934628297 10.9071151372603 10.9886540022398 11.0279186427080 10.7707983952843 10.6173057490002 10.6667659593335 10.8830234360304 10.6229555847531 10.8479481131476 11.0102607340631 11.0108874251992 11.0597002862089 10.8910746600770 10.7838042248054 10.8107452770847 10.8480425458432 10.707071754777 10.8009126214959 0.0770260463671045 0.0751763360227638 0.0752056905865416 0.07662890665836 0.0764582125019995 0.0754792989515067 0.0785917843675961 0.0751570825484624 0.0859514149021217 0.075957975183601 0.0793635527515102 0.0744529441770589 0.0758562403681359 0.0806188805462486 0.078513684798196 0.0746818621686059 0.0791968192306701 0.081024313411841 0.0740947926790751 2 2 + 19448769 19448926 19448837.727 19448025 19449123 + gene protein_coding_gene FALSE TRUE AT2G47380.1 cytochrome c oxidase subunit Vc family protein / COX5C family protein Identical to Probable cytochrome c oxidase polypeptide Vc-1 (EC 1.9.3.1) (Cytochrome c oxidase subunit 5c-1) [Arabidopsis Thaliana] (GB:O22912); similar to cytochrome-c oxidase [Arabidopsis thaliana] (TAIR:AT5G61310.3); similar to Cytochrome c oxidase polypeptide Vc (Cytochrome c oxidase subunit 5c) (GB:Q42841); contains InterPro domain Cytochrome c oxidase subunit Vc; (InterPro:IPR008432) 0.0902604777431883 1.17280850120136 0.273059118463721 1 1.43665092036501 21.6511070830722 0.0902604777431883 0.0531380909232036
AT3G59910_at 5.49778248371854 5.54016300275129 4.77544146547563 5.39973600648999 5.55718782902957 5.72077012600543 6.18601672559137 6.27511785208396 5.55617781522042 5.9054191768184 5.94013911395792 5.82619793791399 5.9099518710949 5.90698072797984 6.32989558205745 6.25763357462501 6.06536461839093 5.67022924929696 5.69508671372846 0.182886469668757 0.183611623767895 0.190685385199040 0.198847574164766 0.189277334538229 0.190078373664432 0.187788871718712 0.186198188807409 0.195108068289702 0.18783360819521 0.183376339163113 0.182886469668757 0.186399752023271 0.201107562023778 0.182886469668757 0.182886469668757 0.198563771178030 0.188180998989986 0.189876561982614 3 3 - 22141825 22142327 22142104.727 22141460 22144560 - gene protein_coding_gene FALSE TRUE AT3G59910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44090.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX96769.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA92347.2); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84657.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.121040821730301 -1.17248455632125 0.273182161399656 1 1.43631173739126 11.4726237628951 -0.121040821730301 0.112982029256865
AT3G19630_at 5.7908648755747 6.08020169965471 6.10816186026354 6.05173236003961 6.12633472029159 6.21821760787232 5.84629473003387 5.62753112505954 5.10302253808126 4.5554198031277 4.33513197076573 5.05901210936463 4.53194726885678 4.70203140190477 4.46663022224184 4.55252082273377 5.32566350260369 4.5867573401611 4.7240125051172 0.177440171944087 0.174875692594131 0.176726288569317 0.181230317092401 0.180262440662047 0.186569342310691 0.175219299792153 0.180186567312804 0.183268707208398 0.185912246124046 0.178798453060306 0.179501589974138 0.191446881127159 0.178417787945082 0.188389184565047 0.175811903326921 0.181288464748268 0.178810840988688 0.185280736859953 3 3|0 -|/ 6818744 6819770 6819204.6 6818393 6820749 - gene protein_coding_gene FALSE TRUE AT3G19630.1 radical SAM domain-containing protein similar to radical SAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G39670.2); similar to Os03g0202300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049302.1); similar to radical SAM domain-containing protein (ISS) [Ostreococcus tauri] (GB:CAL53142.1); contains InterPro domain Radical SAM; (InterPro:IPR007197); contains InterPro domain Conserved hypothetical protein 48; (InterPro:IPR004383) 0.0953493719615246 1.17184069180310 0.273426851843385 1 1.43563778040124 10.7257240949843 0.0953493719615246 0.0654869731159874
AT3G03070_at 9.95382082882765 9.8563293998332 9.72989744875668 9.87233170272434 10.0421659658266 9.76737180416755 9.8052608040691 9.95787786623736 10.0905751376458 9.77155092352496 10.1974600338826 10.2312742891909 10.0980480815870 10.1874543626009 10.2380916183417 10.0676842187990 9.80863615713433 10.0678107977531 9.79134490716649 0.0798153154867129 0.0864725914610345 0.0862328275142358 0.079042797065079 0.0774718423949933 0.0962474799437077 0.0814121153173643 0.0853288133079607 0.0884304043952288 0.0811717376249254 0.0801141136042306 0.0774718423949933 0.0815264253925277 0.0778382532242201 0.0808130420979243 0.0801262976633318 0.0854354848240434 0.0841856066836654 0.0806946592647203 3 3|0 -|/ 696611 698051 697453.6 696306 698163 - gene protein_coding_gene FALSE TRUE AT3G03070.1 NADH-ubiquinone oxidoreductase-related similar to NADH:ubiquinone oxidoreductase 13 kD-like subunit [Chlamydomonas reinhardtii] (GB:AAQ64639.1); similar to Os08g0161700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061051.1); contains domain NADH-UBIQUINONE OXIDOREDUCTASE 13 KD-A SUBUNIT (PTHR13156); contains domain SUBFAMILY NOT NAMED (PTHR13156:SF1) 0.0935933138795333 1.16879104015081 0.274588237546235 1 1.43244911404840 19.8714058614004 0.0935933138795333 0.0620578691907138
AT1G12310_at 9.012090212112 9.28295397378462 8.83738550297194 8.86213895966744 9.41198392338492 9.09599686721385 9.01030501206632 9.27414821991673 9.28578377623862 8.70988358674882 9.41094555440203 9.54602486337612 9.05394691734645 9.29038364418488 9.58849691808711 9.22031007857652 8.76146174614192 9.14623256847417 8.85342465998476 0.111444863856325 0.0993760377439455 0.100915563095017 0.101785540009959 0.103277923478203 0.0988064869903151 0.106626329693588 0.100826786645385 0.0998538917713457 0.103565780225040 0.0978087836912856 0.100344305241907 0.100138973379004 0.104637711885985 0.104718463884914 0.104621475316015 0.106679729823261 0.102963692446485 0.107984813174920 1 1 - 4187606 4187908 4187749.727 4187163 4188054 - gene protein_coding_gene FALSE TRUE AT1G12310.1 calmodulin, putative similar to calmodulin, putative [Arabidopsis thaliana] (TAIR:AT1G62820.1); similar to putative serine/threonine kinase [Vitis vinifera] (GB:AAO49473.1); similar to EF hand family protein [Solanum demissum] (GB:AAT40490.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.104764952086268 1.16764478719672 0.27502579181447 1 1.43125211471785 18.1993366475469 0.104764952086268 0.0853847167409531
AT4G33010_at 12.8489836353355 12.9779680823755 13.3634485822188 13.412034696435 12.8402989182633 13.034625167514 13.7391869572977 13.9781701736009 13.7569894982965 14.1543716120543 13.9001747628045 13.7486579365323 14.0856785720455 13.9747184742387 13.6477551629830 14.2943837721274 14.0486686879572 14.1232952357602 13.9036595608641 0.0539709228493747 0.0567661919715241 0.0554301556536737 0.0539174911209609 0.0542050465544601 0.0539174911209609 0.0563090675446748 0.059563214518005 0.0608203639717366 0.0539174911209609 0.054069408567544 0.0540028935571289 0.0555395122369253 0.0579611651202657 0.0549015781146525 0.0539174911209609 0.0562487633686747 0.0571877207423478 0.0539950885503063 4 4|0 -|/ 15926861 15927872 15927314.889 15926673 15931335 - gene protein_coding_gene FALSE TRUE AT4G33010.1 glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative Identical to Putative glycine dehydrogenase [decarboxylating] 2, mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase 2) (Glycine cleavage system P-protein 2) [Arabidopsis Thaliana] (GB:Q94B78;GB:O82642;GB:Q8GTY1;GB:Q8VZF0); similar to glycine dehydrogenase (decarboxylating), putative / glycine decarboxylase, putative / glycine cleavage system P-protein, putative [Arabidopsis thaliana] (TAIR:AT2G26080.1); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:P26969); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49954); similar to Glycine dehydrogenase [decarboxylating], mitochondrial precursor (Glycine decarboxylase) (Glycine cleavage system P-protein) (GB:O49850); contains InterPro domain Glycine cleavage system P-protein; (InterPro:IPR003437) -0.0919495096134262 -1.16753833891710 0.275066454488947 1 1.4311409955674 27.2324679262773 -0.0919495096134262 0.0583974923052575
AT2G26780_at 7.8781121200768 7.64681896458444 8.15011397495106 7.94355532184094 8.43220088210695 7.72611580339646 7.9006192418353 7.44639679953022 7.41519888841943 7.37890062344554 7.49930910141716 7.62244678917579 7.17378171314193 7.68816732303472 6.92088292721064 7.61961464038059 7.61982432885044 6.99096907831964 7.53041144367192 0.177402135293021 0.17245564273395 0.179032656488686 0.1749161324684 0.181720181468023 0.172604332396674 0.187221232114195 0.183057839482217 0.181821956276694 0.175838803636682 0.170319625517098 0.174536187504252 0.179724333126835 0.16931307955302 0.195405810180450 0.173819104462232 0.186498304780872 0.190447253906167 0.179274879244070 2 2|0 +|/ 11429127 11430641 11430015.8 11417154 11430850 + gene protein_coding_gene FALSE TRUE AT2G26780.1 binding similar to HEAT repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95739.2); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52718.1); similar to HEAT repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91356.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) 0.147690274956447 1.16749162096655 0.275084302033026 1 1.43109222990978 15.3071807083088 0.147690274956447 0.154885100338777
AT4G30190_at 10.2775071811005 10.3117736625291 9.840333677043 9.67309196700837 9.56178008308738 9.48771461628307 9.29538625842862 9.37101017047658 9.75791501172668 9.50292122246253 10.0435059941682 10.7040398370019 9.5075135605346 9.71192779767848 10.3496959133824 9.87972786017847 9.09117570570596 10.1352226309254 9.50064878942066 0.122003505320075 0.115254134294661 0.126527574593058 0.115455362871108 0.119233798345257 0.115254134294661 0.117457235345641 0.120348624949501 0.14110033357487 0.120895433919537 0.125071569557167 0.117358951991079 0.120619701190085 0.124906818063256 0.123376813492494 0.118244536344314 0.133317255598612 0.115934790849474 0.120618350578995 4 4 - 14770834 14771544 14771213.182 14770505 14776062 - gene protein_coding_gene FALSE TRUE AT4G30190.1 AHA2 (Arabidopsis H(+)-ATPase 2); ATPase belongs to the P-type ATPase superfamily of cation-transporting ATPases, pumps protons out of the cell, generating a proton gradient that drives the active transport of nutrients by proton symport. has two autoinhibitory regions within the C-terminal dom Identical to ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2) (AHA2) [Arabidopsis Thaliana] (GB:P19456); similar to AHA3 (Arabidopsis H(+)-ATPase 3), ATPase [Arabidopsis thaliana] (TAIR:AT5G57350.1); similar to AHA1 (PLASMA MEMBRANE PROTON ATPASE), ATPase [Arabidopsis thaliana] (TAIR:AT2G18960.1); similar to AHA9 (Arabidopsis H(+)-ATPase 9), hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G80660.1); similar to plasma membrane H+-ATPase [Lycopersicon esculentum] (GB:AAB17186.1); similar to H(+)-transporting ATPase [Solanum tuberosum] (GB:CAA54045.1); similar to plasma membrane proton pump H+ ATPase (GB:AAA32813.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain Plasma-membrane proton-efflux P-type ATPase; (InterPro:IPR006534); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) 0.0837501278160355 1.16660692226629 0.275422458266699 1 1.43016901196423 19.4848311204863 0.0837501278160355 0.0347614446032917
AT3G47060_at 5.88475039234655 6.00574865827767 6.25546343805794 6.14926036081168 6.38284286116882 6.03968963274959 6.05256785057113 6.0008649494034 5.79535333562417 5.58823399775831 5.50768612231899 5.56208692413727 5.77017134732089 5.85338550205038 4.98107846698933 5.82055404957319 6.06933673424237 5.74981661523633 5.70043656194516 0.19339363130456 0.201631783756849 0.197752652018152 0.191182301054804 0.192536722484722 0.1988217799546 0.191355207342453 0.201241789822186 0.191947256725920 0.194826501882106 0.189792775961182 0.188154383043804 0.184882433691849 0.193668195631842 0.189783442376790 0.188052007650679 0.191059669911960 0.210519889820556 0.190159191277477 3 3 + 17346816 17347555 17347145.909 17343970 17347951 + gene protein_coding_gene FALSE TRUE AT3G47060.1 FTSH7 (FtsH protease 7); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FtsH protease that is localized to the chloroplast similar to FTSH9 (FtsH protease 9), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G58870.1); similar to Os02g0649700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047584.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL56127.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0952104745025175 1.16618744245237 0.275582912527691 1 1.42973143975789 11.7758680689281 0.0952104745025175 0.0662026270208645
AT4G15930_at 8.87018892991446 9.08656166664676 9.08068757289846 9.03960429155774 9.3904038990282 9.16658798030402 9.45308719035768 9.53783884546864 9.2639577126981 9.35405984538152 9.56809010696716 9.5093975000884 9.55969974736486 9.6341437945075 9.46892774148279 9.79747558193957 9.5250258883517 9.52340850847023 9.35319661993372 0.107704797929247 0.104040305301114 0.112935719937479 0.113685784539030 0.109517733573981 0.110576113326240 0.109596100865763 0.109106255324536 0.11328707181429 0.107448120577179 0.110205905836133 0.107907458068855 0.104753908435187 0.109182507004202 0.114381135828727 0.107891111852454 0.120832013630379 0.111755939722635 0.107619853259149 4 4|0 +|/ 9036439 9037809 9037027.778 9036236 9038077 + gene protein_coding_gene FALSE TRUE AT4G15930.1 dynein light chain, putative similar to dynein light chain, putative [Arabidopsis thaliana] (TAIR:AT5G20110.1); similar to Dynein Light Chain family member (dlc-1) [Caenorhabditis elegans] (GB:NP_498422.1); similar to Os01g0256400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042625.1); contains InterPro domain Dynein light chain, type 1; (InterPro:IPR001372) 0.0909674135794849 1.16596661703416 0.275667410331082 1 1.42950113436593 18.6516246310142 0.0909674135794849 0.0562843914734765
AT2G13290_at 6.01923726173141 7.05665476478353 5.96364276621257 6.62443860643125 7.35085838676234 5.95877429906902 7.03324006460292 7.19146938058471 5.47259124533543 5.82884194417616 5.17804798909316 5.28522432148747 5.65826909231237 5.92369883319858 4.97358911411261 5.41763488476037 5.73999493111287 5.61693739157196 5.69664257284878 0.274918642258023 0.286210418885189 0.282623621175191 0.301586721853968 0.279326461549618 0.286303355292931 0.293156985350834 0.285249338338259 0.294579639909647 0.275855737890746 0.276985544234888 0.278565425717755 0.278026900324663 0.282184909175322 0.287927118060694 0.274918642258023 0.289731557319939 0.278966378437241 0.274918642258023 2 2 + 5519710 5520163 5519933.182 5518644 5520347 + gene protein_coding_gene FALSE TRUE AT2G13290.1|AT2G13290.2 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G12990.1); similar to Os12g0611900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067255.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); similar to Os04g0477500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053087.1); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) -0.271286268860401 -1.16580074225464 0.275730895315517 1 1.42932815875081 12.2198893531854 -0.271286268860401 0.322635386956421
AT2G17930_at 8.6406778348609 8.8966395674297 8.41235590210262 8.63671923679969 9.19416868494826 9.00640078107904 8.4583736084406 8.4827187803672 8.75972746152602 8.62492585840328 8.3031175255144 8.44794051667068 8.2142012474112 8.46831206365061 8.16678871851723 8.45521624704922 8.25134752493087 8.54978177842155 8.83924767837309 0.153193820741483 0.143144832794592 0.152500121565202 0.156587029843734 0.149148830367892 0.147988727565780 0.157065166258782 0.158645674917447 0.165843756098805 0.147936462047799 0.153001046898243 0.151012464498503 0.146852337834215 0.143144832794592 0.154399202738441 0.147892224253778 0.16231758777238 0.150409634452171 0.153797553141712 2 2 - 7791564 7792263 7792001 7791380 7809312 - gene protein_coding_gene FALSE TRUE AT2G17930.1 FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein similar to FAT domain-containing protein / phosphatidylinositol 3- and 4-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G36080.1); similar to related to the component Tra1 of the SAGA complex [Neurospora crassa] (GB:CAC18279.2); similar to hypothetical protein FG06089.1 [Gibberella zeae PH-1] (GB:XP_386265.1); similar to related to the component Tra1 of the SAGA complex [MIPS] [Neurospora crassa OR74A] (GB:XP_960936.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Phosphatidylinositol 3- and 4-kinase, catalytic; (InterPro:IPR000403); contains InterPro domain PIK-related kinase, FATC; (InterPro:IPR003152); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0957017132694697 -1.16554250309486 0.275829754306057 1 1.42905889914812 17.2652010672726 -0.0957017132694697 0.0674035780759899
AT3G02530_at 7.57642422475652 8.22979427713836 7.29525348846244 7.70789758893476 7.92052819426288 7.65937760627871 7.89967354934197 8.13100721829997 7.43635708185876 7.54140986426561 7.56884631373251 7.59672981632525 7.57734792405349 7.31773300871306 7.84285232129348 7.33837425051655 7.38816180092925 7.31460283333798 7.4119993272603 0.161106966325071 0.160736998330439 0.16866374188609 0.166076851953515 0.162424314576282 0.165169548548660 0.165824900542246 0.166252872011370 0.175436423607457 0.162167953907057 0.163015471076852 0.159953698180217 0.169905622013099 0.179408812973861 0.158974571092341 0.158974571092341 0.170458828079610 0.170263766700990 0.163582400007608 3 3 - 528862 529867 529325.636 528581 532589 - gene protein_coding_gene FALSE TRUE AT3G02530.1 chaperonin, putative similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT5G16070.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96914.1); similar to Chaperonin complex component, TCP-1 zeta subunit (CCT6) (ISS) [Ostreococcus tauri] (GB:CAL56563.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96959.1); contains InterPro domain T-complex protein 1, zeta subunit; (InterPro:IPR012722); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844) -0.141817494374185 -1.16450954555167 0.276225477316137 1 1.42798227846659 15.2806627474716 -0.141817494374185 0.146727749435783
AT2G17760_at 7.28089852557022 7.7480052868504 7.91306036185533 7.97178779051812 7.4577172867281 6.97133408123987 6.8914618320878 6.43034824631447 5.61295412688913 6.071590593395 5.92200273262801 5.77600039922544 5.40428196765757 5.29484018000083 5.76234364762792 5.52503772626682 5.99909346575564 6.06548813059557 6.11283660969935 0.254235078028934 0.258576111990282 0.260015720044491 0.253069651978799 0.251052963239390 0.273595590331962 0.255127150719239 0.251386293379294 0.269512899200614 0.254819086828366 0.260800712540693 0.254326284188190 0.273306350862352 0.265222564057695 0.258622319216875 0.251532087202112 0.263775127197463 0.254999092559622 0.250796477811230 2 2 + 7722359 7723321 7722916.7 7720396 7723546 + gene protein_coding_gene FALSE TRUE AT2G17760.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT3G51330.1); similar to Os04g0228000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052287.1); similar to H0209A05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66084.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.138485997635764 1.16437293220246 0.276277847844337 1 1.42783994064482 13.1586249136693 0.138485997635764 0.141739270492319
ATCG00510_at 10.4820881843615 11.4258859848738 10.8194174629131 10.9257694330315 10.6540207607379 10.4419286696185 10.7421917791204 11.2471412838923 12.3972020486408 12.1863593390211 13.1887092516269 13.3076231913153 12.8072565670886 12.8977967947950 13.0170099048533 12.9868456683703 12.3089034835123 12.2384608958586 12.1280812218039 0.08910634986126 0.0843402788705152 0.0946073842323685 0.0895303947712602 0.0850944663101254 0.0915758881225118 0.0875185070250424 0.0846890740084001 0.0905467359042378 0.0871781960488103 0.0856282680026338 0.0859936410233234 0.0922371303319589 0.0890340470805544 0.0897919112580705 0.0863186954677927 0.0892300957309212 0.0850525885410133 0.0858177051392977 C C + 59248 59314 59283.727 59247 59360 + gene protein_coding_gene FALSE TRUE ATCG00510.1 Encodes subunit I of photosystem I. Identical to Photosystem I reaction center subunit VIII (PSI-I) (psaI) [Arabidopsis Thaliana] (GB:P56768); similar to photosystem I subunit VIII [Cucumis sativus] (GB:YP_247609.1); contains InterPro domain Photosystem I reaction centre, subunit VIII; (InterPro:IPR001302) 0.171409395017779 1.16302062576846 0.276796685644733 1 1.42643160165831 23.382950406235 0.171409395017779 0.189731540080961
AT2G27330_at 5.46722257084759 5.43279298390939 5.21964386357029 5.34506786946703 5.05051172661545 5.24019083523217 5.09039595560678 5.01137340651222 4.58279971550135 4.36994234444413 5.05928773910999 4.95272477279657 4.38054920940948 4.95807747135561 4.89300123251086 4.33491349820315 4.43686519970807 4.45957068087875 4.47692652668655 0.207290871327566 0.213110543428880 0.203750436154255 0.213789616191617 0.212796997891249 0.210902399555017 0.206247876685218 0.219109380182111 0.221330347389695 0.218192566041953 0.224916082519674 0.202014661215465 0.215055159197825 0.203629626188353 0.203302180329214 0.202014661215465 0.215139521728812 0.202014661215465 0.214425415191355 2 2|0 -|/ 11702431 11702896 11702711.75 11702112 11703705 - gene protein_coding_gene FALSE TRUE AT2G27330.1 RNA recognition motif (RRM)-containing protein similar to RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G06210.1); similar to RNA-binding re (GB:ABE84363.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0856124372273934 1.16270086474079 0.27691948301886 1 1.42609875951505 9.8126148619904 0.0856124372273934 0.0420844268648355
AT4G31670_at 6.66004569249677 6.70604949941048 6.79969521764661 6.51474123356209 6.7392653158387 6.82365642537716 6.44195488316214 6.0777469495025 6.11187717710596 6.54182750445213 6.10543710960602 5.8835092604356 5.88111287190244 5.92905117072106 5.6875292072265 6.19300037783085 5.95430833635742 5.81681845921157 6.49766942853948 0.216380955487107 0.216898510932627 0.215174958189195 0.234731918221195 0.214773412480751 0.224816573868106 0.216055848345637 0.229701887866726 0.242425381757459 0.217009440113091 0.223729347373079 0.221247191934776 0.236181112318605 0.214125829834427 0.215042292860017 0.213830106175891 0.217192380360157 0.219607166568509 0.219413482367469 4 0|4 /|- 15336015 15336455 15336182.9 15335873 15339597 - gene protein_coding_gene FALSE TRUE AT4G31670.1 ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT2G24640.1); similar to putative ubiquitin-specific protease 15 [Oryza sativa (japonica cultivar-group)] (GB:BAD37420.1); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) -0.10227761445396 -1.16105108727140 0.277553744247340 1 1.42438251395922 12.7529630117215 -0.10227761445396 0.0817368525753726
AT1G32500_at 9.23468079691449 9.36080039274364 9.34846811253664 9.31822596052205 9.39463981830295 9.07049058653357 9.7034691229757 9.52300712443264 9.23951265551685 9.09274943140258 9.48337712000846 9.53507523061901 9.23227243161628 9.5208484653411 9.71959052685724 9.47846958969174 9.047844228874 9.4747182649299 8.88614650691383 0.122027358767353 0.117697826426328 0.116665081500672 0.115676885520816 0.119168198621491 0.129351754961245 0.120783354009939 0.118089339620121 0.127459449652986 0.114658896083173 0.113430021719264 0.115951042284384 0.120753556721202 0.129939392976139 0.120176456758850 0.115468414433298 0.122731552163253 0.119800919733852 0.119039779743573 1 1|0 -|/ 11750071 11751118 11750451.5 11749803 11752086 - gene protein_coding_gene FALSE TRUE AT1G32500.1 ATNAP6 (NON-INTRINSIC ABC PROTEIN 6) Encodes a member of a heterogenous group of non-intrinsic ATP-binding cassette (ABC) proteins. Members of this group bear no close resemblance to each other nor to representatives of specific ABC protein subfamilies from other organisms. This grouping is arbitrary and will likely change upon acquisition of further data. Identical to Protein NAP6, chloroplast precursor (Non-intrinsic ABC protein 6) (Plastid SufD-like protein) (NAP6) [Arabidopsis Thaliana] (GB:Q9LQK7;GB:Q8LCI4); similar to ATABC1 (ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT4G04770.1); similar to Os01g0127300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041902.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54531.1); contains InterPro domain SufBD; (InterPro:IPR000825) 0.0955941889191538 1.16085486244214 0.277629261403125 1 1.42417849748955 18.6238864127969 0.0955941889191538 0.0680129041875263
AT3G61200_at 7.48399102162487 7.73456896884648 7.68654830112385 7.82782740185283 8.1906960083233 7.2306756087387 7.57723628143665 7.76863251933422 7.79957337189122 8.14124549175799 7.34142835651059 7.31375581452663 7.59796439146255 7.93550744395688 6.95506198345749 7.53588243951658 7.6500275639573 7.68455018631629 7.81283793112133 0.194015968146035 0.191440956381998 0.206258167030607 0.198501774503986 0.19629010668004 0.221011468656991 0.195171816902525 0.193019133411502 0.209663709054658 0.189029494225541 0.199763291277393 0.196448117426968 0.195904039823937 0.196954548990394 0.204553999656474 0.195049056206735 0.221009814383432 0.193092509854667 0.194079526142908 3 3|0 -|/ 22668593 22669264 22669003.444 22668430 22669365 - gene protein_coding_gene FALSE TRUE AT3G61200.1 thioesterase family protein similar to thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G04290.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC07026.1); similar to Os07g0463500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059584.1); similar to Os07g0462700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059581.1); contains InterPro domain Thioesterase superfamily; (InterPro:IPR006683) -0.161641846797343 -1.15975886270342 0.278051362233143 1 1.42303942454942 15.3973509492701 -0.161641846797343 0.176568410399009
AT3G07880_at 9.42101740268046 9.54477935156804 9.4099976140943 9.42795928482798 9.82333503837936 9.50518050779045 9.51727863957627 9.47071613963896 9.06465434773007 9.04340330558009 9.275758488591 9.24293499706092 9.39260014975486 9.19406115439238 9.3968936068038 9.49761840046067 8.65612617600346 9.15417264571726 9.1791464316114 0.121505420097107 0.117280017214886 0.120426464288075 0.122829583428047 0.117117442886463 0.126916037742654 0.117117442886463 0.119938463807105 0.139945405371068 0.118922855267709 0.122321360907029 0.117357751168063 0.118485798078841 0.121875909705712 0.117117442886463 0.117117442886463 0.136905840195262 0.124633239034791 0.122279418040496 3 3 + 2514317 2515521 2515078.455 2513977 2515829 + gene protein_coding_gene FALSE TRUE AT3G07880.1 Rho GDP-dissociation inhibitor family protein Identical to Rho GDP-dissociation inhibitor 1 (Rho GDI-1) (AtRhoGDI1) (GDI1) [Arabidopsis Thaliana] (GB:Q9SFC6); similar to Rho GDP-dissociation inhibitor family protein [Arabidopsis thaliana] (TAIR:AT1G62450.1); similar to Rho GDP dissociation inhibitor 2 [Medicago truncatula] (GB:CAF02296.1); contains InterPro domain RHO protein GDP dissociation inhibitor; (InterPro:IPR000406) 0.0918531176406423 1.15946030924378 0.278166433438125 1 1.42272926913251 18.6760356959804 0.0918531176406423 0.0597051163671776
AT3G46540_at 6.62416011067727 6.7393298075766 6.67259293359416 6.83716896718292 7.04612058945903 6.34147678443353 7.48619587453309 6.93254247594775 6.85233641643245 7.09192961832737 7.03595165687532 7.25181151369176 6.49240093293388 7.04130800141133 6.72970688809944 6.60568576514694 6.39859020735205 6.51233155603475 6.56386585104668 0.181814238974609 0.182135213358049 0.185892796063485 0.180365970019363 0.184836934662845 0.195080287898427 0.184752288279057 0.179669725838868 0.199484222775508 0.178914874748636 0.176820667782868 0.185991981171567 0.176462148044329 0.180415594610667 0.181362110038822 0.182726099850138 0.181661330537873 0.185733206372211 0.182625023844948 3 3 - 17145239 17145851 17145526.727 17145076 17146572 - gene protein_coding_gene FALSE TRUE AT3G46540.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT1G08670.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_451737.1); similar to Os01g0841000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044763.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.149393947629293 -1.15927548424063 0.278237689641264 1 1.42253728991344 13.6322070814899 -0.149393947629293 0.158928291759392
AT1G05940_at 7.99686292805346 7.93669204271868 8.45375718300552 8.40877031945791 8.30421732797143 8.00818369655561 8.15876867729864 8.14435120239484 7.59787539427119 7.95514870586283 7.33559360136407 7.4656134184712 7.8185521441234 7.74347393906133 7.36816165926361 7.87667853260509 8.23261029580497 7.94853898569567 7.78716738231598 0.141831120400740 0.135699659001424 0.148561825734559 0.135697550551040 0.136349471299437 0.140313698956134 0.138872136965635 0.140228932358240 0.157850169185795 0.135197182505903 0.136039104428491 0.130911158618891 0.141475205203635 0.139442564673852 0.150489992968445 0.133821872766214 0.136149336358868 0.143804412328537 0.136819407686339 1 1 - 1801430 1802455 1801924.545 1801161 1803983 - gene protein_coding_gene FALSE TRUE AT1G05940.1 CAT9 (CATIONIC AMINO ACID TRANSPORTER 9); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g05940) similar to CAT4 (CATIONIC AMINO ACID TRANSPORTER 4), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT3G03720.1); similar to putative protein [Oryza sativa] (GB:CAC39065.1); similar to Os02g0655700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047620.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.0890762068482747 1.15853341044898 0.278523932149942 1 1.42176670899345 15.928308746948 0.0890762068482747 0.0529128969349098
AT1G12470_at 7.32848418623877 7.02949365869298 7.02404227498769 7.0398559663406 7.2476555505773 7.20236675584613 6.90153040675183 6.56317086167225 7.07821450022364 6.85475581317555 6.39560673473628 6.32876174626763 6.4404739709669 6.58507542819499 6.66686618313795 6.41469288703993 6.17234436835722 6.95983735036618 6.67392283695022 0.187434519417471 0.187892933121604 0.185880681391507 0.183598925703558 0.189897479446941 0.192472466813828 0.183919994265694 0.193576441971133 0.193140644430775 0.188372386809662 0.190602871961698 0.185145933358688 0.185816097460331 0.194611514226688 0.192140243253729 0.183337616299921 0.204509745041975 0.188583062639861 0.192721454888698 1 1 + 4256307 4257171 4256696.182 4251357 4257390 + gene protein_coding_gene FALSE TRUE AT1G12470.1 Pep3/Vps18/deep orange family protein similar to vacuolar protein sorting protein 18 [Danio rerio] (GB:CAI11898.1); similar to Os08g0178100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061126.1); contains InterPro domain 7-Fold repeat in clathrin and VPS proteins; (InterPro:IPR000547); contains InterPro domain Pep3/Vps18/deep orange; (InterPro:IPR007810); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.100348345608722 -1.15726553906043 0.279013541938458 1 1.42045093657602 13.7242858161800 -0.100348345608722 0.0785797125190305
AT2G47900_at 7.11702991943488 6.97364043146117 6.38915462700411 6.69442007650622 7.44506397340838 7.21998569158678 7.158692946729 7.39125595184128 6.54288610608586 6.76845901638502 6.92664229676873 6.8162168516313 6.98563295157067 6.6300780339755 6.98515048298685 6.75998501513439 6.38469705819635 6.83969603134538 7.00171886504153 0.179973380583611 0.174275594263424 0.193189353271693 0.172568494550148 0.175245144596861 0.198405685304377 0.173693889642218 0.179625094931354 0.190393907319531 0.174047889948595 0.173989086562116 0.172401254501724 0.174270479095876 0.189688833311014 0.183713724176673 0.178125182922073 0.188788950257918 0.178700608703569 0.174077060983553 2 2|0 -|/ 19618288 19618922 19618642 19618013 19620290 - gene protein_coding_gene FALSE TRUE AT2G47900.1|AT2G47900.2 AtTLP3 (TUBBY LIKE PROTEIN 3); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP10 (TUBBY LIKE PROTEIN 10), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G25280.1); similar to Tubby protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95936.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) -0.101503854604932 -1.15715982702357 0.279054395745041 1 1.42034127655765 13.8296722869325 -0.101503854604932 0.0808914078616214
AT2G27980_at 5.68149143060162 5.72733281316511 5.41729462581918 5.47898585477147 6.04893729123601 5.8199655489052 5.40958319471684 5.79833353703309 5.79854666792861 5.58666768545881 5.39191238764679 5.7454484601493 5.66757477335343 5.56380854395379 5.61836353211721 5.62131890466699 5.16968369005761 5.18397432308755 5.815686821278 0.199662032841419 0.208490325881527 0.213999933431223 0.205706717280712 0.205410318399630 0.213045150105157 0.198613955455223 0.202370420803372 0.209020798042910 0.198613955455223 0.206022307528064 0.202763084210211 0.202158567583949 0.198613955455223 0.203598855747962 0.200519559389689 0.202653355764062 0.201648211393478 0.198613955455223 2 2|0 -|/ 11921053 11922152 11921545.7 11920706 11926818 - gene protein_coding_gene FALSE TRUE AT2G27980.1 protein binding / zinc ion binding similar to PHD finger transcription factor, putative [Arabidopsis thaliana] (TAIR:AT2G36720.1); similar to putative PHD zinc finger protein [Ipomoea trifida] (GB:AAS79577.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.100631280852791 -1.15693672094943 0.279140633854621 1 1.42010986143372 11.2871876879148 -0.100631280852791 0.0792019844438961
AT2G48040_at 6.89500467691948 6.72377944197241 6.69969142402712 6.5833471819895 7.62252142261944 6.69035700584401 6.90665912564722 6.51956301235332 7.41409543378632 7.4324112686286 7.33930595444116 7.09950338234444 7.28257057598616 7.31354624753968 6.28643801899828 6.91931247392335 6.85023453818885 6.93471522137853 7.54977903781505 0.208533182289135 0.209994880138640 0.214523845370171 0.220194480807361 0.210134831757269 0.211264210279833 0.214269990074072 0.213392806547544 0.213026127755493 0.207565906381534 0.209851072121194 0.207962194752111 0.207565906381534 0.209842820258058 0.207993807808769 0.208106307322873 0.218603142342883 0.210740776583064 0.207565906381534 2 2|0 -|/ 19658665 19659515 19659144.222 19658266 19659835 - gene protein_coding_gene FALSE TRUE AT2G48040.1 similar to Os01g0388500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043105.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69280.1); contains domain UNCHARACTERIZED (PTHR13167); contains domain UNCHARACTERIZED (PTHR13167:SF2) -0.162248792039842 -1.15540591229362 0.279732923294473 1 1.41852289088104 14.0644313522599 -0.162248792039842 0.178307447443652
AT1G27910_at 5.00860652034278 4.63190692117106 4.56327645055586 4.73183822074862 5.17571560126261 4.86174313449616 5.52949832588473 5.32855967916999 5.11387808013434 5.40478476629371 5.46159622842867 5.56754641715225 5.27534423606465 4.7887793285683 4.75708665170634 5.18984634244266 5.25156436732968 5.41747781554442 4.90443247103181 0.210073833480995 0.205954251400236 0.207411322168506 0.214561480627008 0.210369157708123 0.218001820847624 0.209053390261154 0.231633724728433 0.211895750255613 0.211170668668696 0.208956899560591 0.206008779470943 0.210514690316298 0.225021511067425 0.217684968414894 0.212653538576921 0.230296433535422 0.205926125094321 0.211180443583836 1 1 - 9720950 9721471 9721188.364 9720723 9724701 - gene protein_coding_gene FALSE TRUE AT1G27910.1 U-box domain-containing protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G67530.1); similar to armadillo/beta-catenin repeat family protein / U-box domain-containing family protein [Arabidopsis thaliana] (TAIR:AT1G24330.1); similar to Os01g0901000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045108.1); similar to B1065G12.5 [Oryza sativa (japonica cultivar-group)] (GB:BAB90523.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) -0.109438054479162 -1.15427451918983 0.280171324340515 1 1.41735094321153 10.1562365796496 -0.109438054479162 0.096239354690025
ATCG00590_at 9.51600743489223 10.4719777896770 10.5772506732925 9.92510927703354 10.6956159219218 9.07141495914155 10.4598092581379 10.4162398233891 12.1372954801905 12.2025544276630 13.2605273395492 13.3108766249337 12.7645125471211 12.8178312779924 12.5921296243611 13.0598722398314 12.3741487011725 12.4530918925700 11.9866255895731 0.141981286824832 0.137734685583779 0.134201524476274 0.137257229170083 0.134087361574313 0.139710806400003 0.134315499476453 0.138970281318012 0.143565085368268 0.134219025232076 0.128719983983522 0.131372200059672 0.129242358885150 0.131362444074876 0.136465475823391 0.128719983983522 0.137744092874493 0.137308732631706 0.128719983983522 C C + 65712 65780 65748 65712 65807 + gene protein_coding_gene FALSE TRUE ATCG00590.1 similar to cytochrome b6/f complex subunit VI [Gossypium hirsutum] (GB:YP_538953.1); contains InterPro domain Cytochrome B6-F complex subunit VI; (InterPro:IPR007802) 0.285818873227933 1.15414004151695 0.28022346958725 1 1.41721169915684 22.6106526155608 0.285818873227933 0.345203706487238
AT4G22140_at 5.99734836950073 6.2843526674202 6.21210839094978 6.01236272367101 6.47509842727595 6.0040622313108 6.34335867538397 5.97304431185568 5.04460477503507 5.65831295319739 5.64322224829546 5.87381579335193 5.8984898498169 5.34525575051037 5.97864897148709 5.630583842567 5.71110901299676 5.65847872887403 5.78804830974959 0.192250262658414 0.182366076501067 0.195812669187843 0.185408346476239 0.190215535468725 0.192801508904750 0.184164809897899 0.189532667434129 0.189450987512198 0.186810156412812 0.183513179403467 0.187985086618505 0.192594448879142 0.189691856362462 0.190077411077304 0.184149160394414 0.186777515509619 0.186326779224519 0.184076445847941 4 4|0 -|/ 11728591 11729346 11729022.7 11727738 11730521 - gene protein_coding_gene FALSE TRUE AT4G22140.1|AT4G22140.2 DNA binding similar to bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04260.1); similar to unknown [Solanum tuberosum] (GB:ABB29929.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Bromo adjacent region; (InterPro:IPR001025) 0.123421891335918 1.15381118642943 0.280351019821817 1 1.41687123654583 11.7699365767034 0.123421891335918 0.120055246399444
AT2G03390_at 8.88563602135211 8.97718341831614 8.8372126615675 8.97030810540754 9.3898759224779 8.69322835001915 9.57743203804285 9.25186179325167 9.02917167822753 8.84709796857403 8.7944247347145 8.76983013184934 8.63750899419243 8.85581711360866 8.69765958027 9.0131823943594 8.64249165423214 8.67747326876168 8.60640165723491 0.110917495187282 0.111217763865368 0.114208406177772 0.111304642059024 0.117487040793452 0.114808546585961 0.118395089389325 0.114180626991768 0.117447754281254 0.111558396726459 0.113428897498256 0.110728665790454 0.111553763955313 0.117349152430438 0.112029360448882 0.110153080668981 0.121495151708669 0.115822090289635 0.117262985177930 2 2|0 -|/ 1030653 1032325 1031576.722 1030399 1032622 - gene protein_coding_gene FALSE TRUE AT2G03390.1 uvrB/uvrC motif-containing protein similar to PREDICTED: similar to F-box only protein 21 isoform 2 [Canis familiaris] (GB:XP_543416.2); similar to PREDICTED: similar to F-box only protein 21 [Rattus norve (GB:XP_341092.3); similar to Os08g0172200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061100.1); contains InterPro domain Hemimethylated DNA-binding region; (InterPro:IPR011722); contains InterPro domain UvrB/UvrC protein; (InterPro:IPR001943) -0.133440337609823 -1.15344319857454 0.280493803586695 1 1.41649034122434 17.8671450814764 -0.133440337609823 0.135978372179555
AT2G35840_at 9.63654494348825 9.58483618949684 9.95212909234077 9.77244829433231 9.92600042991857 9.76462423483218 10.6865496026451 10.4152194158004 10.0654845614337 10.4738711381177 10.1487390929505 10.2217391959544 10.2415964312997 10.1790220200363 10.0156851517968 10.4247553685572 10.4707297154419 10.3217793806521 10.0965606253550 0.0980843691756924 0.0965210153857763 0.0993091579983206 0.095503677334365 0.0985732997047144 0.0974518279399353 0.0996889654119586 0.097810990251287 0.103776367510912 0.0997779987052127 0.0994837878286755 0.095503677334365 0.0984840740208557 0.100912339964502 0.098669480440867 0.095503677334365 0.0957261537311281 0.0980114534872723 0.0959464323483845 2 2|0 +|/ 15062127 15062655 15062427.111 15060702 15063084 + gene protein_coding_gene FALSE TRUE AT2G35840.1|AT2G35840.2 sucrose-phosphatase 1 (SPP1) similar to sucrose-phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G51420.1); similar to sucrose phosphate phosphatase [Malus x domestica] (GB:AAS79792.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Sucrose phosphatase, plant and cyanobacteria; (InterPro:IPR012847); contains InterPro domain Sucrose-phosphate phosphatase; (InterPro:IPR006378); contains InterPro domain Sucrose-6-phosphate phosphohydrolase C-terminal; (InterPro:IPR013679); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380) -0.0929766693588727 -1.15338746718558 0.280515433149329 1 1.41643266250272 20.1997829768009 -0.0929766693588727 0.0634951053524742
AT3G27700_at 7.02776791930089 7.3940787332502 6.92539725416651 7.55996105405249 7.18891261468787 7.3187995560117 7.14675244216335 7.0950419970525 7.58709011316454 7.04355558133075 7.11995690418648 6.96722884406859 7.02091467293458 6.52359923349574 6.11592878048994 7.08858401829429 7.64823301767141 6.54962615155875 7.02793026594586 0.217458596093137 0.215725153893430 0.223685431135563 0.21410471347412 0.213143586606046 0.213143586606046 0.215785699772878 0.215640770740988 0.219580408543337 0.22154458487506 0.214859750539794 0.214911031187236 0.218529651619205 0.223805640573400 0.219713956743839 0.213143586606046 0.221338734540559 0.232450921053774 0.221132469658838 3 3 - 10258958 10259831 10259464.455 10258354 10263211 - gene protein_coding_gene FALSE TRUE AT3G27700.1|AT3G27700.2 RNA recognition motif (RRM)-containing protein similar to H0718E12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66461.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.128954510260835 -1.15277071741845 0.280754885752522 1 1.41579449422919 14.2564810828279 -0.128954510260835 0.129085256128647
AT1G05590_at 4.91610827553513 5.27532671016003 4.81311638032168 4.76957628319344 5.26626199674559 5.21977210922658 5.19217320470192 4.88474126352543 5.04834778416823 5.0635484309079 5.31992813996016 5.60563707947328 5.33439127778795 5.38014277657389 5.23595105782408 5.6287901987189 5.04626576066241 5.13472451398232 5.13531245236512 0.174217218558111 0.181471535539256 0.178516000956478 0.177517921525499 0.178169403947609 0.178369560086087 0.182255747329685 0.176668702962489 0.182152504897005 0.176825705054593 0.177036638565087 0.179317355607112 0.176804749797286 0.184136329178404 0.175499982127082 0.174217218558111 0.187524958172549 0.176841844305993 0.17798462855199 1 1 + 1671118 1671653 1671393.727 1669349 1671875 + gene protein_coding_gene FALSE TRUE AT1G05590.1 glycosyl hydrolase family 20 protein similar to glycosyl hydrolase family 20 protein [Arabidopsis thaliana] (TAIR:AT3G55260.1); similar to Os07g0575500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060078.1); similar to Glycoside hydrolase, family 20 [Medicago truncatula] (GB:ABE82127.1); similar to Os03g0219400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049401.1); contains InterPro domain Glycoside hydrolase, family 20; (InterPro:IPR001540) 0.101710145183491 1.14983780098765 0.281895840814870 1 1.41276303003848 10.2512003978112 0.101710145183491 0.0825616454849138
AT1G73430_at 4.9915922687396 5.61571621666412 5.30860656275315 5.37437977379633 5.41760722706564 5.40933768683209 5.71448411601317 5.27818835058521 5.19600258320813 5.51363064397349 5.52354567118036 5.50707319547479 4.98337143557863 5.07848678977168 5.25165688879493 5.06947543502353 4.70716630218809 5.07068458354741 5.45202594617932 0.270213255058166 0.275685541289063 0.270577753761874 0.278088724895559 0.271791203245152 0.277266081776454 0.266453079303712 0.279223817638928 0.307939413281033 0.265981911490244 0.262925649366118 0.262925649366118 0.26937325977428 0.27041069015787 0.277356672855537 0.27168617508289 0.265617275827090 0.308184539086218 0.270458227166333 1 1 + 27612940 27614455 27613723.4 27607316 27614729 + gene protein_coding_gene FALSE TRUE AT1G73430.1 sec34-like family protein similar to Subunit of cis-Gol (GB:CAL52453.1); similar to Os08g0451000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061944.1); contains InterPro domain Sec34-like protein; (InterPro:IPR007265) -0.130399806073719 -1.14760070176071 0.282768615813989 1 1.41045444265151 10.6568151563805 -0.130399806073719 0.132279797128936
AT3G02360_at 10.3333730644167 10.4592185844599 10.5008302212859 10.7535568387520 10.2650354364681 10.3269863325707 10.33217641802 10.5449553677986 9.9470615598541 10.2462473823135 10.1468776824167 10.2025423173791 10.0280830679022 10.1820995431205 10.128041872118 10.2208240969422 10.3147842908681 10.4268464557071 10.0065421943353 0.0730005222450888 0.07082549119116 0.0725436148715871 0.0703152400491095 0.0685489300143632 0.070864437625788 0.0695860228235206 0.0727217170493373 0.074044807494244 0.069781484330344 0.070624242180658 0.0686028664536737 0.0688625297574915 0.0736377184550975 0.0711653862582076 0.0685489300143632 0.0733835276930337 0.0685489300143632 0.0697934144945321 3 3 + 483373 483915 483691.273 481905 484154 + gene protein_coding_gene FALSE TRUE AT3G02360.1|AT3G02360.2 6-phosphogluconate dehydrogenase family protein similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G64190.1); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96861.1); similar to 6-phosphogluconate dehydrogenase [Glycine max] (GB:BAA22812.1); similar to 6-phosphogluconate dehydrogenase (GB:AAB41553.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal; (InterPro:IPR006114); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal extension; (InterPro:IPR012284); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain 6-phosphogluconate dehydrogenase, decarboxylating; (InterPro:IPR006113); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal core; (InterPro:IPR012283) 0.0919083594505834 1.14746262077837 0.28282255739128 1 1.41031205369547 20.5759562636253 0.0919083594505834 0.0621120727770091
AT4G18370_at 8.46973839902079 8.58510776149736 8.03845231937652 7.86621146264545 8.66333874694309 8.15442969170684 8.93849349993548 8.74253517826961 8.67015645947858 8.80550079283304 8.84378344903274 9.28097805751266 8.72862455802565 9.06460308184465 9.28341991520524 9.42273694625874 8.85122144961024 9.02354361920881 8.86993214579688 0.131355299019369 0.125066053958363 0.136761399528473 0.130744867907024 0.127609674024978 0.134809315952517 0.136117887192267 0.133887515875396 0.131783276397307 0.128940761034999 0.135897965422754 0.137429162722378 0.124987934870694 0.130180197068814 0.130619197953576 0.132430353812270 0.139587093115316 0.129710678127305 0.131581426815846 4 4 + 10149707 10151012 10150617.636 10149140 10151229 + gene protein_coding_gene FALSE TRUE AT4G18370.1 HHOA (DEGP PROTEASE 5); serine-type peptidase/ trypsin Encodes a putative protease HhoA precursor (HhoA). Identical to Protease Do-like 5, chloroplast precursor (EC 3.4.21.-) (DEGP5) [Arabidopsis Thaliana] (GB:Q9SEL7;GB:O49507;GB:Q93ZW5); similar to DEGP1 (DEGP PROTEASE 1), serine-type peptidase [Arabidopsis thaliana] (TAIR:AT3G27925.1); similar to Protease Do-like 5, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99861.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.111429951314161 -1.14732310714131 0.282877067035503 1 1.41016819973723 17.3544018910695 -0.111429951314161 0.100961504728937
AT2G13840_at 5.58362209957825 5.50312916975212 5.20625500810133 5.44871751858419 5.62037851166613 6.20407446221592 5.39802670577958 5.27606440521879 5.08028057083839 5.14960600715927 5.0085092611768 4.73408222778208 4.76452056610719 4.34992516452902 4.8589968324425 4.59581078758122 5.00216657306424 4.72757764621998 5.28185881626863 0.19214503053924 0.18761699565742 0.199352294273167 0.192438633860508 0.184068320685471 0.192972722072695 0.187879253244605 0.191207752355466 0.201537622514274 0.191046617750718 0.187999785591372 0.187081369652326 0.192687013197691 0.186954648341581 0.190838029721191 0.183870870142791 0.185236540529846 0.1925293484978 0.196659348774477 2 0|2 /|- 5795729 5796299 5795988.4 5795634 5798208 - gene protein_coding_gene FALSE TRUE AT2G13840.1 PHP domain-containing protein similar to Os03g0192000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049236.1); similar to putative PHP domain N-terminal re (GB:BAD15560.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain PHP, C-terminal; (InterPro:IPR004013); contains InterPro domain Phosphoesterase PHP, N-terminal; (InterPro:IPR003141) -0.117868692833090 -1.14590125684218 0.283433082450101 1 1.40870282342395 10.4929237003379 -0.117868692833090 0.112264729466521
AT3G29390_at 7.23471279462477 6.25392635705063 7.20947876623389 7.0192572242827 7.74406347969544 6.86685940946992 6.78695610204215 6.09410366910532 6.50950776183984 7.2019620572925 6.65123203179184 7.08654067411721 7.50477234631576 6.65590486938595 7.04016290567961 7.75879076080319 6.68202895602125 6.83716310582395 7.90635464959413 0.219834651489950 0.215717326500589 0.217934980028012 0.212936940071329 0.222162207288779 0.219207596978711 0.218979547457994 0.218922291867667 0.224225842195382 0.212823278166311 0.222186477932259 0.211761170926719 0.215844589888733 0.227866618264933 0.215331181049545 0.211761170926719 0.21735428052445 0.216363611526473 0.215203422831764 3 3|0 +|/ 11293857 11295726 11294692.1 11290850 11296011 + gene protein_coding_gene FALSE TRUE AT3G29390.1 RIK (RS2-INTERACTING KH PROTEIN) Nuclear localized K-homology containing protein that interacts with AS1. similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G33970.1); similar to ROUGH SHEATH2-interacting KH-domain protein [Zea mays] (GB:AAY24682.1); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.219311477940817 1.14581523656885 0.283466748870454 1 1.40861421127967 14.0176776982220 0.219311477940817 0.259446847863598
AT1G01650_at 8.50196358283734 8.53391945234566 8.61210562786411 8.32247684742273 8.59221909081452 8.2078901008036 7.64664996178241 8.0022202168814 8.37251992948178 8.10566639352884 8.06441685748112 8.05549778138655 8.21958972817127 8.11645209436337 7.96817624603491 8.38793847821811 7.99309099472178 8.22262292845866 8.01806934849976 0.119236167557907 0.118573394335990 0.121313103708745 0.117273193541258 0.125192968394061 0.128823013296737 0.123313832619872 0.121259961976658 0.114783438049353 0.114842694605320 0.127497749652700 0.117894526915502 0.114783438049353 0.119517305098531 0.117989297797505 0.118109812494612 0.128621640486914 0.124689425078081 0.117353043591168 1 1|0 -|/ 233387 234944 234289.167 232841 237817 - gene protein_coding_gene FALSE TRUE AT1G01650.1|AT1G01650.2 peptidase similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 [Medicago truncatula] (GB:ABE91379.1); similar to Protease-associated PA; Peptidase A22B, minor histocompatibility antigen H13 [Medicago truncatula] (GB:ABD32820.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369)|similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G63690.1); similar to growth-on protein GRO11 [Euphorbia esula] (GB:AAL14628.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.112769597349440 1.14505860046876 0.283763017775616 1 1.40783498067638 16.4493764579813 0.112769597349440 0.103694982270904
AT3G04310_at 5.4235872336576 5.53568931429755 5.32675860960891 5.75055174440406 5.94736004922794 5.78230720520181 6.0523102320151 6.27106199552661 5.74888925068551 4.97942293429409 5.4541850221207 5.29130398230794 5.53669648290306 5.47532513640452 4.73111752908019 5.3329798015625 5.24153665661235 5.18000792054479 5.38523972067826 0.26621656324071 0.267823815451556 0.272862069180461 0.26621656324071 0.269802023056336 0.278401048434736 0.271653012081736 0.270538524306442 0.275916197802136 0.272058628167234 0.268472047092058 0.270259135163387 0.266885021366356 0.271598817627255 0.26621656324071 0.26621656324071 0.286185020960462 0.274958796536948 0.273067889775463 3 3 - 1141606 1142241 1141890.545 1141588 1142535 - gene protein_coding_gene FALSE TRUE AT3G04310.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33250.1); similar to Os01g0680600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043873.1) -0.104853846937074 -1.14472978629419 0.283891845935467 1 1.40749646156217 11.0869923154898 -0.104853846937074 0.0894647879238816
AT3G29400_at 7.1239669740067 7.11087526749709 7.28663742290908 7.30969152598392 6.97991586722618 6.99056133789165 7.01345071558329 7.04613721847494 6.33311107381679 5.86937990939468 5.77900411584450 5.86761622084171 6.01803530309607 6.0424606854937 5.46584324811602 5.86312366312849 5.93470426822574 5.72004578022903 5.97659796360536 0.191541963615191 0.194502360232816 0.190315412738029 0.190518151804037 0.189094499997566 0.192821691787315 0.197118521177536 0.200008339261659 0.203553513597883 0.188129241054318 0.190699048040296 0.189325243565286 0.210077890097324 0.202277139016129 0.207876353398049 0.191709662013678 0.198686755479114 0.200174905934531 0.193943429932987 3 3 - 11298601 11299149 11298888.545 11298520 11300857 - gene protein_coding_gene FALSE TRUE AT3G29400.1 ATEXO70E1 (exocyst subunit EXO70 family protein E1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70F1 (exocyst subunit EXO70 family protein F1), protein binding [Arabidopsis thaliana] (TAIR:AT5G50380.1); similar to Os01g0763700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044336.1); similar to leucine zipper-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB63582.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) -0.0776240801857473 -1.14386432419237 0.284231155174929 1 1.40660578581142 13.0556797793104 -0.0776240801857473 0.007512681396225
AT2G47250_at 8.84119496078132 8.91180325810955 8.94884623506891 8.84589635458737 9.1788953319301 8.92010666721202 8.66744639794728 8.4291825610851 7.99505453217793 8.05140945028219 7.85567391966266 8.1134500496637 7.83531542490596 8.11351269918997 7.88277099124485 7.86776896020404 8.10846140682264 7.8041357328162 8.0234630964047 0.163787728947006 0.161622319710961 0.162917799229112 0.151937047294009 0.150121706110000 0.160255567813614 0.149776124294863 0.15248664379334 0.160248814952201 0.154603072697313 0.163506817366152 0.151530102417164 0.154392633701329 0.154445068913310 0.161136412849812 0.156736643157233 0.159839310132167 0.169522993017144 0.159326647148218 2 2|0 -|/ 19407035 19407788 19407353.556 19406764 19410114 - gene protein_coding_gene FALSE TRUE AT2G47250.1 RNA helicase, putative Identical to Probable pre-mRNA-splicing factor ATP-dependent RNA helicase (EC 3.6.1.-) [Arabidopsis Thaliana] (GB:O22899); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G62310.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95605.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE87664.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL50218.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.092678237247132 1.14379602514076 0.284257946049471 1 1.4065355173884 16.8283940580162 0.092678237247132 0.0645949426914666
AT1G74100_at 10.3636358627354 10.9388094108304 10.5776080677026 10.8942888358236 10.3827347936078 9.83989090006621 10.3732935199995 10.8107783154749 9.4543561281996 9.72182295398627 10.2204199643012 10.5109786699258 10.1660797704705 10.1193867408993 9.50786770561777 9.95027579237673 9.2953107440957 10.2714430576850 9.33356447265103 0.154117887025074 0.152464124406525 0.152599060335758 0.158483511629783 0.152990373438349 0.148223759363846 0.153354210164333 0.152852898665945 0.162210365842036 0.152475816384261 0.151858771292469 0.150271170950261 0.153329531037723 0.15990643937702 0.157509302805221 0.14856265896789 0.165663725681117 0.149143372412046 0.161419451997459 1 1 - 27868155 27868724 27868431.182 27868006 27869355 - gene protein_coding_gene FALSE TRUE AT1G74100.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G74090.1); similar to Sulfotransferase [Medicago truncatula] (GB:ABE89261.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.151986913049596 1.14371885377614 0.284288219601544 1 1.40645612441466 20.2768640419220 0.151986913049596 0.165733951751551
AT2G18160_at 8.97419506881404 9.04263032764397 9.43225754977682 9.4392693211004 9.67641493822484 9.51783202361626 9.98953855301607 10.0084907893506 8.8673060154063 9.69968114695807 9.59239234028631 9.5563846620576 9.84749752065092 9.70591832100363 9.20738154745539 10.1090392504126 9.33165425789873 9.44610429280706 9.78415314208405 0.0782224847331917 0.0732280668225365 0.0794375149112413 0.0733504061193824 0.0706156051729163 0.0759128176963625 0.0723985295533228 0.0766759852630108 0.0917249013203272 0.0746793343772133 0.07580598042475 0.0702867018325734 0.078163429303591 0.0711940608990343 0.0729177167391114 0.0712505490011523 0.0823444681754966 0.0724116714081052 0.0716035494210477 2 2 - 7905502 7905856 7905660.273 7905094 7906324 - gene protein_coding_gene FALSE TRUE AT2G18160.1 GBF5 (G-box binding factor 5); DNA binding / transcription factor Encodes a b-ZIP transcription factor. similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT1G75390.1); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE85416.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain Basic leucine zipper; (InterPro:IPR011700); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.080948098031061 1.1436855823025 0.284301272465044 1 1.40642189629748 19.0350418842200 0.080948098031061 0.0300937421272288
AT3G06540_at 6.04115476530593 6.30497237250571 5.67878530688431 6.20854948485202 6.18060062697752 5.98566876734014 6.04424701355533 5.56284722896751 6.04838345918436 5.43152221905061 5.41226588287847 5.49434386173076 5.33856954051587 5.57614668026188 5.06982640193952 5.63065381197666 5.19555724770107 5.32706494958085 5.53075830897231 0.235617315506420 0.225746357952499 0.237804526493611 0.223183659474981 0.234743880253177 0.250867552086436 0.229097143498968 0.230579488722715 0.235592449097654 0.223511041203506 0.225319077214015 0.221975584089932 0.221975584089932 0.235411734140057 0.23137595215243 0.221975584089932 0.236239804705341 0.225001606125198 0.223319483027782 3 3|0 -|/ 2035247 2036039 2035680.9 2035010 2037794 - gene protein_coding_gene FALSE TRUE AT3G06540.1 GDP dissociation inhibitor family protein / Rab GTPase activator family protein similar to ATGDI1 (Arabidopsis thaliana guanosine diphosphate dissociation inhibitor 1) [Arabidopsis thaliana] (TAIR:AT2G44100.2); similar to putative Rab escort protein (REP) [Dictyostelium discoideum AX4] (GB:XP_641266.1); similar to Os01g0269100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042697.1); contains InterPro domain Rab GTPase activator; (InterPro:IPR002005); contains InterPro domain Yeast Mrs6p protein; (InterPro:IPR000632) -0.132286040283041 -1.14189400342382 0.285004844255473 1 1.40457985127373 11.5262406338697 -0.132286040283041 0.136262718837135
AT1G70620_at 7.8179784953287 7.51619468817666 7.44211732224555 7.08289950621761 8.01694229641404 7.11266777137724 7.34136655790084 6.90584256505615 7.63126253482586 8.54220200638833 8.06954008222894 8.41141091830249 7.99467940147347 7.79142720360733 7.98472188365767 8.56683956904758 7.38960210194944 7.47691447980076 8.7813739303087 0.197980616866156 0.200406505521638 0.202648189643518 0.198613120652588 0.199593852393479 0.223332996201856 0.197196989262532 0.206366194323681 0.208566548837699 0.195856201903856 0.202740050149800 0.20427703497728 0.195856201903856 0.206304055771387 0.200934041233381 0.205504856325575 0.208772755788863 0.213702445138778 0.197381709616371 1 1|0 +|/ 26633198 26633938 26633583.1 26630229 26634767 + gene protein_coding_gene FALSE TRUE AT1G70620.1|AT1G70620.2 cyclin-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Os04g0661700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054150.1); similar to H0112G12.14 [Oryza sativa (indica cultivar-group)] (GB:CAH67069.1) -0.169663194025570 -1.14166140861016 0.285096289009145 1 1.40434085540289 15.5439618730976 -0.169663194025570 0.191732108925550
ATCG00050_at 6.95114369052252 8.13606447932651 7.73800221800602 8.25093389428159 8.13379872610583 7.12673215610952 8.64894580917136 8.59459485307096 9.31055116251196 9.3638697042343 9.18679896570308 9.66458683971814 8.67357928656485 9.2342197580876 9.11856335367493 9.14300707091842 8.13666011750045 9.44071973206484 9.1541671547235 0.189351116274768 0.166532699111217 0.167131154496381 0.165815115228688 0.165614281737342 0.177864416644912 0.155547777934359 0.163359309729427 0.167015882757500 0.158378250580753 0.156076795182812 0.170119113129296 0.162155212208707 0.167285703023332 0.16343852973345 0.159656312490307 0.174671766535129 0.158863414772657 0.157273696944397 C 0|C /|- 5089 5257 5167.444 5084 6188 - gene protein_coding_gene FALSE TRUE ATCG00050.1 Homologous to the bacterial ribosomal protein S16 Identical to Chloroplast 30S ribosomal protein S16 (rps16) [Arabidopsis Thaliana] (GB:P56806); similar to SSR16 (ribosomal protein S16), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT4G34620.1); similar to Chloroplast 30S ribosomal protein S16 (GB:P10359); contains InterPro domain Ribosomal protein S16; (InterPro:IPR000307) -0.235874788012323 -1.13932069593682 0.286017851336923 1 1.40193765751311 17.1230084271671 -0.235874788012323 0.283528468751968
AT1G07250_at 9.17735034761835 9.6408218820486 9.27689871011825 9.48925101990365 9.6788865991388 9.53832315578853 9.88473967663579 10.1674992490174 9.8333895475897 9.87443631048202 9.94564923635353 9.56075672871183 9.98573040759467 9.94700499116434 9.44787253447155 10.1532316538361 9.70358161920283 9.81895878213828 9.76141616955124 0.11028010572213 0.105771886397098 0.108105526308110 0.103722116826514 0.105087187376822 0.111097993383849 0.106430115013333 0.108644155890044 0.113516505540758 0.110101492746448 0.100735070639784 0.100735070639784 0.100735070639784 0.106015335223955 0.106009984328414 0.103202340359222 0.110794138412220 0.103648453209276 0.105488167801796 1 1 + 2226871 2227347 2227108.091 2225899 2227565 + gene protein_coding_gene FALSE TRUE AT1G07250.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G07260.1); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 (GB:2ACV); similar to Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose (GB:2ACW); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.112247674641455 -1.13928547822356 0.286031735114881 1 1.40190152651920 19.4284357900629 -0.112247674641455 0.103776601470467
AT1G30130_at 6.18382966042711 5.83353046546533 5.79874250652288 6.14013449109772 7.09651721255328 6.30924368148998 6.76921254543943 6.671402158288 5.63720758092169 6.51291097202716 6.22790688281293 6.20801038721695 6.72792140869877 6.67068223384865 6.22786837525586 6.77256825511934 6.64975225735995 6.2427165768275 6.27230099865695 0.203407820111493 0.199798964259600 0.203346405263866 0.201506946004414 0.197709419161383 0.205152251028584 0.197405345531279 0.205092890657304 0.208072556004741 0.205367208266193 0.206599408921528 0.195793065499400 0.200059582098467 0.197603087723462 0.206234514934978 0.197803221201946 0.202898814257672 0.195793065499400 0.200297966832914 1 1|0 +|/ 10588551 10589178 10588879 10587586 10589744 + gene protein_coding_gene FALSE TRUE AT1G30130.1|AT1G30130.2 similar to hypothetical protein [Brassica oleracea var. alboglabra] (GB:CAA99112.1); contains InterPro domain Protein of unknown function DUF1365; (InterPro:IPR010775) 0.148393772725778 1.13924284084078 0.286048544650416 1 1.40185778451188 12.6536939973327 0.148393772725778 0.161286992875615
AT1G27650_at 6.86829402249599 6.7028006926212 6.20367082194726 6.58470994633756 7.0709693781647 6.51300551479898 6.44845705139252 6.55333896456387 6.77950488765207 6.32802515080601 6.6255250712201 5.9466183798872 6.55972933905092 6.66108036219039 6.54292709433029 6.6754702499891 6.15908722986159 5.98510480581325 6.66264352781364 0.182563007550052 0.170805889183044 0.179855451463743 0.172305944750498 0.173357932481477 0.181113187867924 0.174018343528898 0.173776182777085 0.174851779001812 0.179344865613652 0.174600669717416 0.176931693334505 0.170805889183044 0.181274581663114 0.171276836937134 0.179586923065019 0.184812573703277 0.17450291506715 0.182545936279454 1 1 + 9615442 9615821 9615635.727 9614538 9616344 + gene protein_coding_gene FALSE TRUE AT1G27650.1|AT1G27650.2 ATU2AF35A; RNA binding|ATU2AF35A U2 auxiliary factor small subunit. The atU2AF35a protein and its homolog, atU2AF35b, contain most of the conserved domains of hsU2AF35, including the psiRRM, one RS domain, two zinc fingers, and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83% identical, and each Arabidopsis homolog shows approximately 70% similarity to hsU2AF35. U2AF(35) homologs were also identified from maize, rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues, with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots: atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions. similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to RNA-binding re (GB:ABE79661.1); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to ATU2AF35B, RNA binding [Arabidopsis thaliana] (TAIR:AT5G42820.1); similar to hypothetical protein LOC664621 [Mus musculus] (GB:NP_001034752.1); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.122874403168661 -1.13906143319432 0.286120072387527 1 1.40167169011572 13.1104061350236 -0.122874403168661 0.121742786923127
AT1G26690_at 7.24934689120735 7.499780793897 6.9721952193783 7.31660200626501 6.85550899540901 5.9434948849155 5.62035272542504 5.92598193659645 6.10582388210525 4.96201180136878 5.25489795649918 5.83832593504717 5.66128759015084 5.71349274226897 5.29724490758077 5.68534701298639 5.20568971068209 5.83280987606159 5.2354749726689 0.219492400419513 0.227698766291200 0.227556649178426 0.223146181609087 0.225819431652426 0.219574875958248 0.225013682020678 0.229311765516853 0.231155335906729 0.224607551202525 0.225294913814846 0.219492400419513 0.22646783410349 0.224550294560166 0.220059197429581 0.219492400419513 0.231130915781188 0.231077229952477 0.224442818883674 1 1 - 9224324 9225576 9225117.545 9224132 9225762 - gene protein_coding_gene FALSE TRUE AT1G26690.1 emp24/gp25L/p24 family protein similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT1G69460.1); similar to Os03g0376000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050219.1); similar to GOLD [Medicago truncatula] (GB:ABE86767.1); similar to Os07g0632700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060368.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.162392385369571 1.13810302728649 0.286498202819207 1 1.40068887433998 12.170694857532 0.162392385369571 0.182037724024368
AT3G16990_at 6.73120790620252 7.16575392002733 7.4951968526231 7.54846761224086 6.96318720296562 6.26658195583574 6.28441779329461 6.268856334108 5.64590685288233 5.81597041497857 5.45841787335189 5.27078999486985 5.5955218774407 5.42100473209526 4.98860416446457 5.61161516515335 5.56498004861049 6.34790807345487 5.68876797355739 0.201711039446513 0.203609171452679 0.201332716153048 0.20244009782762 0.199475551430794 0.215087566360156 0.196620141736504 0.200352046329458 0.202607487721526 0.196828355159289 0.204720553382077 0.200240490811759 0.196620141736504 0.202892271875535 0.199073968007756 0.196620141736504 0.208900270508403 0.203747988842090 0.206410253230394 3 3 - 5795957 5796691 5796339.818 5795845 5796856 - gene protein_coding_gene FALSE TRUE AT3G16990.1 TENA/THI-4 family protein Identical to Seed maturation protein PM36 homolog [Arabidopsis Thaliana] (GB:Q9ASY9;GB:Q8LBN8); similar to Seed maturation protein PM36 (GB:Q9SWB6); contains InterPro domain TENA/THI-4 protein; (InterPro:IPR004305) 0.135636455774455 1.13678855042448 0.287017468562642 1 1.39934187936454 12.465077191322 0.135636455774455 0.1424071698271
AT3G15000_at 8.14583950810338 8.12632886056151 8.08132848151716 8.18065782628656 7.67293050347617 8.11914897941935 7.67249504804372 8.37793718487646 7.84778317429589 7.94800135356005 7.39072433398855 7.44029014376999 7.72114077409305 7.39513526835073 7.65201061467235 7.7042656177761 7.95845129791464 7.58512672500779 7.64628657396878 0.153196217462473 0.152271057349553 0.158282285053997 0.152390703397742 0.159477404914274 0.155741346776155 0.158806566577135 0.156255472990700 0.161048960039814 0.15117609725648 0.171805020217007 0.15569695101921 0.156049877736865 0.156638203115571 0.155818271971918 0.156172336344841 0.162006385693567 0.162599539550987 0.152692584492625 3 3 + 5051582 5052084 5051789.636 5050264 5052439 + gene protein_coding_gene FALSE TRUE AT3G15000.1 Identical to Unknown mitochondrial protein At3g15000 [Arabidopsis Thaliana] (GB:Q9LKA5); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G53260.1); similar to Os09g0509000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063625.1); similar to DAG protein, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97301.1); similar to Os09g0132600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062627.1) -0.137632153191525 -1.13665148836464 0.287071656364999 1 1.39920149061513 15.7570416978130 -0.137632153191525 0.145510729389517
AT3G60380_at 5.37625325125157 6.02239208390642 4.97919468395753 4.7881679692972 5.5521951653773 5.80749512224717 5.84600835358581 6.03475609743456 5.49007522168007 5.93827184957146 6.24040252026875 6.70142568441956 6.05836228461836 6.42478550441523 6.39308418146554 6.30521518051148 5.2719440061103 5.757821582828 6.1513948319639 0.218108891499481 0.220825445400995 0.226417663144731 0.228894812719367 0.224192134061564 0.237620061454731 0.221023954473708 0.220871471986176 0.231656011536197 0.223405737245535 0.221152865102242 0.221040731578727 0.229026298526319 0.218597968547518 0.223898138010417 0.21965912345746 0.225706613582023 0.220238305685167 0.215629172688796 3 3 - 22327908 22328340 22328135.909 22327888 22330241 - gene protein_coding_gene FALSE TRUE AT3G60380.1 similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G16790.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83694.1) -0.126936530491809 -1.13577317236772 0.287419095007972 1 1.39830214378770 11.5528298837913 -0.126936530491809 0.128898471421762
AT1G73060_at 9.64005587870989 9.73915389264086 9.5599669086054 9.40910824982191 10.00187272213 9.79780629959914 10.3233332262547 10.3165844634956 10.2432507206478 9.98277191691212 10.1337752628476 10.2705167207486 9.89725276217287 10.0207462556510 10.4121436755344 10.4688281781387 9.89973027059302 10.3160983401003 9.87995834166478 0.111345694313663 0.105895995344553 0.116674009467075 0.111500208308153 0.109922362303243 0.112399259531094 0.111264840468361 0.108298370541746 0.110629308411685 0.107184067010414 0.108870486011830 0.107572620948009 0.108134243192782 0.112541092894754 0.108724204507737 0.105895995344553 0.113954473356035 0.109700022396060 0.107449651969089 1 1|0 +|/ 27483562 27484886 27484237 27482631 27485109 + gene protein_coding_gene FALSE TRUE AT1G73060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48790.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL50320.1); similar to Os02g0117100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045684.1) -0.085266940043866 -1.13563265801112 0.287474709990189 1 1.39815831099454 19.9548419183063 -0.085266940043866 0.047160936834432
AT1G06670_at 6.1934830488397 6.71335458606682 6.47401467811413 6.15305397240936 6.29161067602859 6.32311569544469 6.21914923332634 6.3313046006599 6.19071429249832 5.73271599407108 5.35754885012478 6.13106992936452 6.15909306725866 5.91044528732539 5.72063928713629 5.58218641386743 5.96823781527655 5.661409493425 6.0333766740691 0.201235048146128 0.205097269905242 0.204556241333387 0.217356701803136 0.214204505479859 0.209263367759366 0.214730817764556 0.202796905461248 0.212726368295699 0.206739751440492 0.201235048146128 0.213230462875216 0.212318180302381 0.217043868361582 0.205789138911775 0.208769373775812 0.212468872475554 0.203350673295989 0.201235048146128 1 1 + 2046756 2047252 2046975.727 2040432 2047611 + gene protein_coding_gene FALSE TRUE AT1G06670.1 NIH (NUCLEAR DEIH-BOXHELICASE) nuclear DEIH-box helicase (NIH) encoding a putative RNA and/or DNA helicase homologous to a group of nucleic acid helicases from the DEAD/H family with nuclear DEIH-box helicase (NIH) distinct N- and C-terminal regions that differ from animal DEIH proteins similar to HVT1 (HELICASE IN VASCULAR TISSUE AND TAPETUM), ATP binding / helicase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G30800.1); similar to Os01g0767700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044362.1); similar to mRNA splicing factor ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL52525.1); similar to putative RNA helicase A (GB:AAB01660.1); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) -0.114073831982248 -1.13532164346289 0.287597838840283 1 1.39783999666416 12.2358513554538 -0.114073831982248 0.107635769383496
AT3G59800_at 4.97456002620296 5.25311134449255 4.84235735735435 5.06179529331173 5.07252161212863 5.35811939655501 5.14584738202212 5.30513583148954 4.63808253882737 5.26220069169219 4.70530567052936 5.05080191095525 4.64133486912195 5.13567454721787 4.86708964235413 5.04107753840096 4.91370361233009 4.78959031774781 5.1262037849309 0.193697373832474 0.183721419463827 0.191373021426394 0.188499226122999 0.184383962333550 0.184592599500495 0.183721419463827 0.186545112933560 0.203278695890647 0.186798127202571 0.206469502721683 0.184020668689851 0.186812972809430 0.185248819728717 0.194564951528709 0.188084657665819 0.188571390516642 0.188773626274142 0.18537485757969 3 3 - 22105588 22107095 22106339.182 22105414 22107335 - gene protein_coding_gene FALSE TRUE AT3G59800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43795.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83898.1) -0.100860986391169 -1.13500205134206 0.287724407450312 1 1.39751296838743 10.0776316648108 -0.100860986391169 0.08347672480783
AT4G21380_at 8.0178574806507 8.64209813603342 8.20361508513764 8.05311079531507 5.97902905178153 5.40342058321933 6.27015282303573 5.96531027970914 6.33341634130477 5.05926921106643 4.96135656394179 5.85707247188911 5.1492822095599 6.3914486563872 4.62922322256978 5.9407210575479 5.50740163363758 6.26700369303311 5.30307963062602 0.249748842644614 0.241305099677140 0.239539305829802 0.235698732031637 0.233515240232571 0.248787913287319 0.235847918480258 0.239958320809067 0.243765618106822 0.230093858980733 0.232440802710859 0.230516028152801 0.232042398690090 0.230093858980733 0.236556807189760 0.231337118052852 0.23624587418064 0.246475778795039 0.230979554566929 4 0|4 /|- 11389237 11389658 11389398.889 11388936 11393237 - gene protein_coding_gene FALSE TRUE AT4G21380.1 ARK3 (Arabidopsis Receptor Kinase 3); kinase encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. similar to S-locus protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G21370.1); similar to ARK1 (A. THALIANA RECEPTOR KINASE I), kinase [Arabidopsis thaliana] (TAIR:AT1G65790.1); similar to ARK2 (Arabidopsis Receptor Kinase 2), kinase [Arabidopsis thaliana] (TAIR:AT1G65800.1); similar to serine /threonine kinase [Brassica oleracea] (GB:CAA73133.1); similar to receptor kinase 5 [Brassica rapa] (GB:BAB69683.1); similar to receptor-like kinase [Brassica oleracea var. acephala] (GB:CAA67145.1); contains InterPro domain Apple-like; (InterPro:IPR003609); contains InterPro domain S-locus glycoprotein; (InterPro:IPR000858); contains InterPro domain Curculin-like (mannose-binding) lectin; (InterPro:IPR001480); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain PAN-like, type 2; (InterPro:IPR013227); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.145688586711066 -1.13384890522164 0.288181460307427 1 1.39633353886044 12.6434211541453 -0.145688586711066 0.158284202279845
AT4G12110_at 7.97248380224201 8.25908916402452 7.47772882625716 7.79742776678194 8.16111778503382 7.91603011655184 8.1569323909626 8.1932918263642 7.38341129485125 6.8226770266639 7.7108250333771 7.9272017893326 7.94440498531524 7.73553804874161 8.11670175954437 7.40087512427753 6.98066366809281 7.63543056250888 7.30483117145761 0.175715966991137 0.171265458713164 0.181981446737493 0.177149675526216 0.173544336142289 0.183352960121117 0.172820878370503 0.175246153792215 0.178928339419491 0.171763059887214 0.170570389261809 0.170944133212307 0.171891407984683 0.17561660490329 0.169955424931975 0.169955424931975 0.185021657308532 0.176949164818448 0.172135423412386 4 4 + 7254792 7255657 7255096.364 7254043 7256394 + gene protein_coding_gene FALSE TRUE AT4G12110.1 SMO1-1 (STEROL-4ALPHA-METHYL OXIDASE 1-1); catalytic Encodes a member of the SMO1 family of sterol 4alpha-methyl oxidases. More specifically functions as a 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha- methyl oxidase. similar to SMO1-2 (STEROL C4-METHYL OXIDASE), catalytic [Arabidopsis thaliana] (TAIR:AT4G22756.1); similar to Sterol desaturase [Medicago truncatula] (GB:ABE87434.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Sterol desaturase; (InterPro:IPR006088) 0.101887725749518 1.13327140500992 0.288410572289907 1 1.39574319826186 15.4176435193054 0.101887725749518 0.085786954914088
AT2G24762_at 4.90015669451664 4.79067257438075 5.51996210580419 5.20562025993812 5.19412854591144 4.06018852773327 5.70783170947575 5.77760353564214 4.35862841185277 5.11235177170531 5.16750911594593 6.24061185583452 5.2329677324293 5.73936062408683 6.49620549458644 5.19531114534451 4.49830569077491 4.63474160802977 4.76820158293926 0.226058679114384 0.218906664224313 0.225903892099466 0.223732069295894 0.219399941281306 0.233871457563079 0.223006552495764 0.230091760514433 0.221114638697416 0.219869714483759 0.217882902641248 0.223117045648420 0.220840133540426 0.217882902641248 0.222421384590254 0.219582189171357 0.236366998298009 0.219928876870463 0.227202626685933 2 2 + 10566594 10566891 10566734.364 10566463 10567254 + gene protein_coding_gene FALSE TRUE AT2G24762.1 similar to GDU1 (GLUTAMINE DUMPER 1) [Arabidopsis thaliana] (TAIR:AT4G31730.1); similar to At5g57685 [Medicago truncatula] (GB:ABE81292.1) 0.177570733778091 1.13292095478435 0.288549677583587 1 1.39538506095722 10.2180307844477 0.177570733778091 0.204869654149892
AT4G18400_at 5.89633686396284 6.17543286388517 5.78121474853223 5.83901385566564 6.48727108598546 6.0920506292253 4.98336401363392 5.65606219785379 5.49684578792986 5.7208554388924 6.10017671366699 5.69939341955104 5.59269230193842 5.81542920262949 5.21618892861602 5.26918447960089 4.93837933154788 5.67098208598799 5.6958268811082 0.214458291087966 0.205611434883612 0.210457729810462 0.202314115650451 0.208100835671112 0.217888466518113 0.213383241331126 0.207247143078154 0.214439632102653 0.209409950844152 0.208345357051644 0.205104212791639 0.199728523315174 0.228583296901218 0.203368243697474 0.201060635167753 0.220612004806397 0.205551803202903 0.203943323936422 4 4|0 -|/ 10170048 10171196 10170510.778 10169877 10171268 - gene protein_coding_gene FALSE TRUE AT4G18400.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25549.1) 0.136024600158539 1.13280814750095 0.288594465936027 1 1.39526979613633 11.4516662876360 0.136024600158539 0.143745559353544
AT1G48240_at 5.1223430280438 5.06300827166015 6.06097244571017 5.16245009604627 6.25889730865334 5.96913657136098 6.75101519177521 6.30232511862231 6.53121254269097 6.50210586549471 7.48512732602915 6.70573642049352 7.04702934623592 7.25357077160842 7.03535510715754 6.53318159649654 6.88925904294655 7.02072020644076 7.14972376529573 0.229716170013942 0.220819615038237 0.208265127981695 0.210487661900058 0.207990003272201 0.233271972776001 0.213661196458874 0.211144497881610 0.213121494615486 0.220950474207273 0.212944031917558 0.213911342609930 0.208291294992986 0.216487770743702 0.207806558118602 0.210764857964143 0.219254590365529 0.211507771718338 0.216213885704391 1 0|1 /|- 17812931 17814065 17813396.375 17812675 17815563 - gene protein_coding_gene FALSE TRUE AT1G48240.1 ATNPSN12 (novel plant SNARE 12); protein transporter member of NPSN Gene Family Identical to Novel plant SNARE 12 (AtNPSN12) (NPSN12) [Arabidopsis Thaliana] (GB:Q9LNH6;GB:Q9SX59); similar to NPSN13 (novel plant SNARE 13) [Arabidopsis thaliana] (TAIR:AT3G17440.1); similar to Os07g0637400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060402.1); similar to SNARE 13 [Oryza sativa (japonica cultivar-group)] (GB:AAU94637.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) 0.160878977799784 1.13161226219367 0.289069615064402 1 1.39404836376195 12.6982326048190 0.160878977799784 0.181183116732957
AT1G04950_at 4.66861169691448 5.04571665284168 4.76529532011997 4.93547158767297 5.26774911650935 5.15297194640248 5.02516055021049 5.52601703071466 5.06845175046886 5.34569248964251 5.3855529212779 5.06292881161243 5.27959085424392 5.03467860102258 5.04289298420442 5.2343137082192 4.94132169832413 5.06070448000036 5.57368113183267 0.208334604680199 0.200731458259148 0.203203658695786 0.201148682637840 0.202546661666447 0.210165345586267 0.199507816008616 0.202827721576957 0.212589837810959 0.202882320539367 0.199202626477288 0.200568332125435 0.199203311740422 0.204769888881386 0.205922130004719 0.200656098266889 0.213409640293357 0.210638335973825 0.203519184749272 1 0|1 /|- 1403620 1404066 1403827.444 1403084 1407500 - gene protein_coding_gene FALSE TRUE AT1G04950.1|AT1G04950.2|AT1G04950.3 TAFII59 (TATA box associated factor II 59); transcription initiation factor putative TBP-associated 59 kDa subunit protein (TAFII59) similar to RNA polymerase II transcription factor/ binding / transcription initiation factor [Arabidopsis thaliana] (TAIR:AT1G54360.4); similar to Os01g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043168.1); similar to hypothetical protein SPCC16C4.18c [Schizosaccharomyces pombe 972h-] (GB:NP_587928.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain TATA box binding protein associated factor (TAF); (InterPro:IPR004823); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Protein of unknown function DUF1546; (InterPro:IPR011442) -0.117515803306180 -1.13157396594512 0.289084841251568 1 1.39400926468655 10.2781358033455 -0.117515803306180 0.114163510190186
AT2G46230_at 8.68864638052537 8.64004901950853 8.6994530620078 8.60837907622771 8.88195547608992 8.72383183637172 8.70445923484654 8.83254201393155 8.54051146307957 8.2780932415294 8.1213959592619 8.20636629280402 8.5000870967822 8.25156960936164 8.15635163267931 8.32633694112846 8.00138778940396 8.19165583777904 8.37076276548267 0.115353151136088 0.112769232072817 0.113313161121034 0.112151220165326 0.114462866967584 0.114288446304912 0.116739949134595 0.114681715088142 0.115446758783885 0.112646841474469 0.111588112258122 0.117453839772186 0.114374595905532 0.112158594250349 0.111446998492813 0.112537100922968 0.122528148739202 0.111485684165942 0.113631330458386 2 0|2 /|- 18991647 18992595 18992093.571 18991274 18993032 - gene protein_coding_gene FALSE TRUE AT2G46230.1|AT2G46230.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G26530.1); similar to Nucleotide binding protein, PINc [Medicago truncatula] (GB:ABE90358.1); contains InterPro domain Nucleotide binding protein, PINc; (InterPro:IPR006596); contains InterPro domain Protein of unknown function DUF652; (InterPro:IPR006984) -0.0825406139962606 -1.13156158426593 0.289089764214546 1 1.39399662364579 17.0303393715706 -0.0825406139962606 0.0394869858695153
AT4G39680_at 8.21291657955054 7.91481632773243 8.2469544581633 7.94023666864607 8.51317497712412 7.98877482576165 8.45740015723835 8.17671894810893 8.37284880299215 8.41906322947538 8.20231009904393 8.1006717059245 8.31867265879956 8.24834005427024 8.15137409663495 8.40712463261026 8.16609870126273 8.25732880233132 8.59841668341179 0.114688980868279 0.118261065637530 0.119877962926578 0.115325904061478 0.11231459391788 0.116241302167444 0.117945463515186 0.115769864577286 0.138135288626024 0.115095096492263 0.115826936161579 0.113000378298166 0.118371946359800 0.118654113746393 0.132011301180548 0.116561412249949 0.1289131401622 0.122283538935998 0.117727082389215 4 4|0 -|/ 18414641 18415243 18414908 18414300 18417524 - gene protein_coding_gene FALSE TRUE AT4G39680.1|AT4G39680.2 SAP domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to RNA-binding re (GB:ABE94513.1); contains InterPro domain DNA-binding SAP; (InterPro:IPR003034); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) -0.125065291083595 -1.13075836462716 0.289409267936467 1 1.39317679065657 16.5288406173671 -0.125065291083595 0.126781531233241
AT2G31820_at 8.12941626157286 8.34771170753273 8.24845875139857 7.92402586081263 8.95174817867804 8.1632795232079 8.47643290408487 8.25855187479302 8.48559218455066 8.32250387946424 8.20142040096592 8.21049070164421 8.1794313554567 8.41051370524438 7.55769100990825 8.48158014969504 8.0371823739145 8.13007016083255 8.5677970317781 0.187044598817354 0.183314699549953 0.192339762546994 0.195692391448005 0.189287806681104 0.188676338926333 0.193500261687858 0.183273524941300 0.199275378566963 0.182429436512938 0.1796286487281 0.178520632939361 0.190545952888465 0.178520632939361 0.202939216516675 0.178520632939361 0.197175652792762 0.190381176907466 0.181054887326109 2 2 + 13539127 13539574 13539369.636 13537427 13539639 + gene protein_coding_gene FALSE TRUE AT2G31820.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G05640.1); similar to Os08g0542700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062394.1); similar to ankyrin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08980.1); similar to Os09g0518500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063687.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.144366829097443 -1.13067440003696 0.289442683544174 1 1.39309111348558 16.6172923898294 -0.144366829097443 0.156904815449831
AT3G58690_at 4.75126613017537 5.01445499945203 4.63986288167314 4.43212858079629 4.75819963964298 4.63894880188793 5.37516192593049 5.46431790496786 4.6249646384862 4.35660876534293 5.05002638974341 5.10913552652284 4.8747618234897 5.4380392133333 4.99375968947418 4.64826263065159 4.54807064386337 4.60520592909132 4.68836601208595 0.251804106388158 0.24752757525368 0.261879974616361 0.251636563651872 0.244667340053174 0.253498825332525 0.244667340053174 0.25663712365004 0.253701800532902 0.250507160942218 0.252507223858876 0.244667340053174 0.244882122400622 0.251932831394220 0.250593236740558 0.248145403003207 0.259467782907042 0.247912136353007 0.244667340053174 3 3|0 +|/ 21721452 21722182 21721832.889 21720147 21722358 + gene protein_coding_gene FALSE TRUE AT3G58690.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G54820.1); similar to Os05g0207700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054902.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90116.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0911270026659201 -1.13047915879330 0.289520396125471 1 1.39289190764971 9.61681970943721 -0.0911270026659201 0.0634880632464197
AT3G15610_at 8.72046525299351 9.05558324654886 8.99312369438304 8.98558311025658 9.37702911285488 9.01590080198248 8.80645200360783 8.82860864784288 8.88066080217364 8.86298711797323 9.10049260690511 8.91038421486215 8.95267917167634 9.06211662536375 8.68066138156619 8.99731551141275 8.56521108573753 8.63218496000482 8.95622847329606 0.111977016958298 0.111451259851266 0.111144273997813 0.112966918886026 0.113431227758466 0.120400958599297 0.109643183619914 0.11695337227049 0.122125721236778 0.123634832793017 0.114557004179841 0.109535445851791 0.115562021183223 0.111532913212894 0.114163189988766 0.107502998070221 0.124500745157148 0.122824998983634 0.115017829506750 3 3 - 5291133 5291923 5291390.455 5290854 5293097 - gene protein_coding_gene FALSE TRUE AT3G15610.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G52730.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:BAD32940.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.101401894498874 1.13033794843869 0.289576612978858 1 1.39274784523572 17.8541379800615 0.101401894498874 0.0853539397801999
AT1G50740_at 8.46467934417647 8.47761030459884 8.3261212242507 8.4592842232938 8.41573916558077 8.01241048344407 7.15899214631397 6.9092190541839 7.81500520389068 6.4772521902138 6.54978636446833 6.84779463986447 6.19190794941796 6.92779343787096 6.44743585993307 6.71657424576123 6.99320598163523 7.1431853911682 6.9335616129483 0.177950322778481 0.169084783780093 0.188584806048501 0.184395510063852 0.176119611462784 0.178316742250405 0.168838356839082 0.168838356839082 0.1818020677051 0.182694315770205 0.172289319205853 0.168838356839082 0.173086110441501 0.170078276561499 0.181759367554377 0.173899009860063 0.181767804416952 0.177101925879445 0.179387164913927 1 1|0 +|/ 18811549 18812388 18811839.444 18811340 18812667 + gene protein_coding_gene FALSE TRUE AT1G50740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G20510.1); similar to hypothetical protein 11 [Plantago major] (GB:CAJ34819.1); similar to Os03g0584300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050565.1); similar to Os03g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050510.1); contains InterPro domain Protein of unknown function UPF0136, Transmembrane; (InterPro:IPR005349) 0.101350521619025 1.13007102942939 0.289682899157576 1 1.39247557045907 14.9292487362882 0.101350521619025 0.0853003654455634
AT2G26640_at 4.55534034100463 4.48269936849936 3.27355886099186 3.73553546347427 4.54884246858684 4.59516264856762 4.9523481327293 5.10743295435069 5.29205493193914 4.70477513909221 6.35114576562294 6.66409727742092 5.91051150503632 6.26950248631925 6.62718064985986 4.76631014018778 4.94692337418856 5.54061577993075 4.83910183138185 0.223794336795712 0.219661264715561 0.240968061267030 0.224301278522145 0.222751451332547 0.224375688215034 0.222240628067080 0.218491801005327 0.227652216301027 0.224255896195128 0.232722951538097 0.225272281780573 0.223399478195891 0.230179476481583 0.228217108957702 0.220099666395481 0.244430499957754 0.219753503926459 0.227692295334937 2 2 + 11338203 11338659 11338412.182 11336948 11338936 + gene protein_coding_gene FALSE TRUE AT2G26640.1 beta-ketoacyl-CoA synthase, putative Identical to 3-ketoacyl-CoA synthase 11 (EC 2.3.1.-) (EC 2.3.1.119) (KCS-11) (Very- long-chain fatty acid condensing enzyme 11) (VLCFA condensing enzyme 11) (KCS11) [Arabidopsis Thaliana] (GB:O48780); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT5G43760.1); similar to beta-ketoacyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT1G04220.1); similar to very-long-chain fatty acid condensing enzyme, putative [Arabidopsis thaliana] (TAIR:AT1G19440.1); similar to fatty acid elongase 1-like protein [Limnanthes douglasii] (GB:AAG28600.1); similar to beta-ketoacyl-CoA-synthase [Marchantia polymorpha] (GB:AAO48425.1); similar to putative fatty acid elongase [Zea mays] (GB:CAC01441.1); contains InterPro domain FAE1/Type III polyketide synthase-like protein; (InterPro:IPR013601); contains InterPro domain Very-long-chain 3-ketoacyl-CoA synthase; (InterPro:IPR012392); contains InterPro domain Chalcone and stilbene synthases, C-terminal; (InterPro:IPR012328) 0.101522449721109 1.13005034667224 0.289691136256431 1 1.39245447462506 9.82128828300483 0.101522449721109 0.0856394978698347
AT4G20870_at 5.02602024853102 5.68362822637278 5.11830515577344 5.42680702242659 6.29445801808485 6.42966202306354 7.08184295423048 7.3388115795717 6.59126825739216 6.43148569843192 7.8633062389235 7.76844690942718 7.02634283811799 6.91632166396557 7.79826630103706 6.8282322257551 6.49266076736941 7.1959516464608 6.50881068906236 0.284057674188041 0.267803732727223 0.281043205187052 0.283828441259160 0.263311133951025 0.27041362955455 0.275205605422649 0.263311133951025 0.283531866352797 0.271481567528769 0.27002523945582 0.269124599006385 0.279252439433067 0.264062769077598 0.276502829209809 0.268741060959387 0.274003731238925 0.27969547046117 0.269861324812384 4 4|0 -|/ 11174644 11175452 11175221.4 11174461 11176892 - gene protein_coding_gene FALSE TRUE AT4G20870.1 fatty acid hydroxylase, putative similar to FAH1 (FATTY ACID HYDROXYLASE 1), catalytic [Arabidopsis thaliana] (TAIR:AT2G34770.1); similar to Fatty acid hydroxylase, putative [Medicago truncatula] (GB:ABE90051.1); contains InterPro domain SUR2-type hydroxylase/desaturase, catalytic region; (InterPro:IPR006087); contains InterPro domain Fatty acid hydroxylase; (InterPro:IPR006694) 0.130200914123603 1.12873919841858 0.290213694920913 1 1.39111770559725 12.9232982145956 0.130200914123603 0.135374177567995
AT1G24050_at 9.47683559014748 9.35604761538733 9.6110534753359 9.37980824504467 9.6921389587488 9.40466867834752 9.34256114825258 9.31631117242085 9.03213772519152 8.97303493911274 9.16907351180583 9.0390506344922 8.94462470200687 9.01011495998144 9.16707185046709 8.95528134076708 8.87647423444255 9.05382689953692 8.9667321393857 0.118753462920651 0.116449657709623 0.118461990521124 0.117632582252199 0.117697215194901 0.120578035524557 0.115144382249809 0.117354300835268 0.127346674317537 0.119744193078786 0.113275407064105 0.116282879683880 0.122758380928862 0.129100790806136 0.118729069855918 0.120455191981222 0.129637884627367 0.120799268688397 0.117720174305154 1 1|0 +|/ 8507067 8508403 8507760.8 8507009 8508853 + gene protein_coding_gene FALSE TRUE AT1G24050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70220.1); similar to hypothetical protein Afu6g08070 [Asper (GB:XP_750698.1); similar to Os02g0741900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048085.1); contains domain FAMILY NOT NAMED (PTHR13542); contains domain SUBFAMILY NOT NAMED (PTHR13542:SF2) 0.0926416449706708 1.12864729960605 0.290250349425251 1 1.39102405279115 18.4562154610860 0.0926416449706708 0.0673341252659894
AT2G31240_at 5.12759948136498 5.35258920862065 5.29792159240209 5.13766245194512 4.63500690450951 4.89649849704698 5.6043691674088 5.18111670924582 4.33322757944953 4.39732589063193 4.51973295603213 4.32903224639663 4.69830705144136 4.32445695443267 4.66309255964093 4.49507565487865 5.00946459598038 4.63243543757454 4.69648345283936 0.219475222263584 0.217373169771207 0.221286325805351 0.214201379318948 0.216463165820049 0.225903290615121 0.217262627468748 0.221623672856486 0.223825638247939 0.217689709897609 0.21305309205073 0.211025989091557 0.220635371902297 0.216189694776926 0.216672451567468 0.210503432928400 0.215621603668107 0.220677327930794 0.214208425194698 2 2 - 13324813 13325286 13325063.273 13324492 13326637 - gene protein_coding_gene FALSE TRUE AT2G31240.1 tetratricopeptide repeat (TPR)-containing protein similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT4G10840.1); similar to Os02g0820300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048541.1); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN87741.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.108187786221958 -1.12813753861915 0.290453738359517 1 1.39050466185840 9.68390982974505 -0.108187786221958 0.0984776631883522
AFFX-r2-Ec-bioD-3_at 11.6545698555565 12.0244632862635 11.9020925178050 11.7657789820886 11.8829730016062 11.6332765030943 11.7616693583971 11.9967771189244 1.15138053056138 1.26599048039628 1.51077308717270 1.11542760390692 1.80734242763388 1.29177731787584 1.35844164018669 1.54452727090206 1.93169560678456 1.79454519674038 1.40253541982599 0.274661054101758 0.279196989990167 0.276919449227301 0.276925152072133 0.276392998856647 0.281222390875803 0.275933114960863 0.280427509430326 0.280554688789495 0.28239338651698 0.279386416608866 0.273245912587143 0.283262009724804 0.281088748030297 0.274870065627309 0.278145594616119 0.275512756641584 0.290610806408143 0.278187691610451 NA NA NA NA NA FALSE FALSE 0.103837235834485 1.12811750669487 0.290461733194949 1 1.39048425494999 13.2365092842144 0.103837235834485 0.0904244202860576
AT4G35600_at 6.9366792917631 7.3746810234794 7.6539197003795 7.73456526637057 7.18722799054796 7.03002560904895 6.19438797377147 6.00667448566078 6.9097581853781 5.82167192412169 5.86412672225246 5.85170452890782 5.95708239499715 6.31153252917106 4.6777984457225 5.9557535913124 6.07939165971898 5.70193264794212 6.37306844894319 0.213183650096259 0.214939259700305 0.220646853390557 0.216302224417955 0.211964692973538 0.212054189111437 0.215111496497681 0.210931055775346 0.224910633264319 0.215037905157117 0.215884538209814 0.214762946446195 0.215967811910855 0.211043767795711 0.219417788428302 0.210931055775346 0.219102720260584 0.215387600823825 0.218793280034803 4 4 + 16898106 16898683 16898464.273 16896242 16898881 + gene protein_coding_gene FALSE TRUE AT4G35600.1 CONNEXIN 32; kinase plant-type connexin (gap junction-type protein), a component of plasmodesmata Identical to Probable serine/threonine-protein kinase Cx32, chloroplast precursor (EC 2.7.11.1) [Arabidopsis Thaliana] (GB:P27450;GB:O81792;GB:Q8VZ07;GB:Q9M068); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G17220.2); similar to Os02g0118200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045693.1); similar to Os06g0727400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058637.1); similar to H0409D10.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.102539038386729 1.12808605687371 0.290474285321086 1 1.39045221693437 13.0988109182031 0.102539038386729 0.0879516456385554
AT2G26770_at 7.4977813034562 7.36196120898825 7.45532147871033 7.37529350380349 7.49258314730035 7.62705288769612 8.02395239099576 8.06367538403137 7.09293134763525 7.26380008472246 7.85420997808848 8.06454655277575 7.4624708697303 7.77616190713112 7.79937968893081 7.5886933179021 7.38592994238446 7.76528367444653 7.5430619081055 0.179016582604387 0.172041852114472 0.186884139774758 0.185299497270312 0.175121642987693 0.187632348165682 0.177952721168481 0.175356163057833 0.19636384867755 0.171505251362502 0.171505251362502 0.182477778380840 0.177517523643547 0.181000385875937 0.176059866112004 0.178740387496420 0.177691942900421 0.186887068353464 0.176591104468128 2 2|0 -|/ 11411490 11412573 11412089.667 11411144 11415404 - gene protein_coding_gene FALSE TRUE AT2G26770.1|AT2G26770.2 plectin-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT3G56480.1); similar to plectin-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD68172.1); similar to Os01g0805700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044563.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.08143678022282 1.12790456462282 0.290546730233693 1 1.39026734283396 15.1182104655784 0.08143678022282 0.036510679944297
AT1G77180_at 9.38593892808525 9.60760759901635 9.52173241675098 9.64585564144054 9.6543359827277 9.63988107347432 9.0728349527638 9.25926832788194 9.378009732872 9.62861200639136 9.59387070199717 9.52229012983674 9.48498172026627 9.50976792259479 9.07533927390864 9.62826782834905 9.59403493648856 9.3984072992473 9.74906143191668 0.102277229328860 0.0967467019876685 0.104913824298836 0.103114198434738 0.0937128329029873 0.0956997842168163 0.0955330553920874 0.0973779268784895 0.0945441523869342 0.0926526738117414 0.101218890655871 0.0939186441324075 0.0987484363608064 0.101185946079353 0.100904577468737 0.0918714020330593 0.0933828483112477 0.101539785015072 0.0957963198031991 1 1 - 29004691 29005251 29004975.636 29004502 29007029 - gene protein_coding_gene FALSE TRUE AT1G77180.1|AT1G77180.2 chromatin protein family similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G16940.1); similar to Os02g0759800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048184.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAO25542.1); similar to GAMYB-binding protein [Glycine max] (GB:AAZ38969.1); contains InterPro domain SKIP/SNW; (InterPro:IPR004015) 0.0873405397604632 1.12779639505181 0.290589914332599 1 1.39015716783922 19.0039807154240 0.0873405397604632 0.054590428297639
AT4G34100_at 10.0797546583519 10.1109668179897 9.98110540811652 10.0464023510848 10.4107873876790 10.0759425872121 10.0168485045943 9.87260409307275 10.3253324472712 9.97347523374822 10.3122439814417 10.2019591921831 10.0868333465608 10.2269869200166 9.90453138176832 10.0973754684613 10.0463481926350 10.2195177481005 9.89014071441853 0.0953333510504224 0.09079245139019 0.0996905162839626 0.0986390413045133 0.09079245139019 0.0944975773509138 0.093918317635037 0.0935864148276417 0.0971807289395002 0.0910440322331379 0.09079245139019 0.0926099690547836 0.0958424804732364 0.0911284537716278 0.092184311916908 0.09079245139019 0.096929352738863 0.0973107469912678 0.09079245139019 4 4 + 16334196 16334836 16334479.111 16330595 16335079 + gene protein_coding_gene FALSE TRUE AT4G34100.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G32670.1); similar to zinc finger (C3HC4-type RING finger)protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37529.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE82278.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0912538227187669 1.12763823982866 0.290653063216893 1 1.38999609413965 20.1742801397002 0.0912538227187669 0.0643254638241847
ATCG00420_at 10.4111793922327 11.4056388426182 10.7181006646567 11.0490998684820 10.3908057758176 10.1357330864263 11.2011725689112 11.3012521408960 11.3843869092128 11.8759153978155 12.0810029029184 12.3683416129836 11.7183548825912 11.6469789419935 11.6378141480892 12.0189176460014 11.5456910216062 11.3167982929077 11.5812820603533 0.0938594017712327 0.0938594017712327 0.0947923534441564 0.095525821657499 0.09401363962886 0.110728882772015 0.0943749898674923 0.0957220960994255 0.102017216158994 0.0938594017712327 0.095475737410314 0.0951954981559853 0.0944242910829064 0.097962214845709 0.09521008062588 0.0954697724662372 0.101007653868648 0.100117439492611 0.0938594017712327 C C - 48704 49106 48896.6 48677 49153 - gene protein_coding_gene FALSE TRUE ATCG00420.1 Encodes NADH dehydrogenase subunit J. Its transcription is increased upon sulfur depletion. Identical to NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) (ndhJ) [Arabidopsis Thaliana] (GB:P56754); similar to NADH dehydrogenase subunit J [Raphanus raphanistrum] (GB:BAE46913.1); contains InterPro domain NADH dehydrogenase (ubiquinone), 30 kDa subunit; (InterPro:IPR001268); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) -0.164249955988165 -1.12499445170191 0.291710307651647 1 1.38730592442221 22.5294222359702 -0.164249955988165 0.187474045380388
AT4G26230_at 9.37746108712386 9.50376299282512 9.3257343146121 9.21512246090536 9.37014448192823 9.1792055754274 9.61906459561212 9.56586822911015 8.92790366545154 9.35228516096793 9.40308098686831 9.71933289505809 8.97758932151509 9.11524222043254 9.87230617377425 8.96093205105585 9.06238901384884 8.940888433222 9.25907570836902 0.0975446521791268 0.0957038499526862 0.096249898139040 0.103055927051574 0.0976022271840267 0.101782487251593 0.0985593707728263 0.097224937931727 0.115047594234727 0.0974329825516482 0.096993886674426 0.0962063276212163 0.101931008603623 0.101405222040663 0.100037142986014 0.0963681322122742 0.102194340917901 0.102240492845350 0.0950717366424316 4 4|0 +|/ 13286061 13286527 13286395.667 13285834 13286800 + gene protein_coding_gene FALSE TRUE AT4G26230.1 60S ribosomal protein L31 (RPL31B) Identical to 60S ribosomal protein L31-2 (RPL31B) [Arabidopsis Thaliana] (GB:Q9STR1); similar to 60S ribosomal protein L31 (RPL31C) [Arabidopsis thaliana] (TAIR:AT5G56710.1); similar to 60S ribosomal protein L31 (GB:P46290); contains InterPro domain Ribosomal protein L31e; (InterPro:IPR000054) -0.0836361129535845 -1.12360873044716 0.292265677253966 1 1.38589770751555 18.6126579581437 -0.0836361129535845 0.0449524847342594
AT4G37870_at 9.84611264489766 9.81490439166355 9.50484660266608 9.5376056643662 9.72343676101173 9.7433061904089 9.9556617354043 10.0196371461114 9.24363747206514 9.5913764030895 9.37667284286716 9.56796538527238 9.5587759126085 9.66172738987433 9.41438299070348 9.56111678742586 9.87392684765942 9.61454134360386 9.51593800444161 0.0960104726805916 0.09340282443338 0.0930770349691005 0.0956253797825128 0.0939902196578573 0.0953395743310092 0.0964212860659049 0.0928815432698779 0.0999595840468922 0.0940730518732518 0.0975680849126153 0.0914422413978374 0.0958505917941784 0.0945838444179681 0.094945888754932 0.0919959893490774 0.0997846517673238 0.0983161173053866 0.0962519506557372 4 4|0 -|/ 17802979 17803793 17803502.5 17802688 17806533 - gene protein_coding_gene FALSE TRUE AT4G37870.1|AT4G37870.2 phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative|ATP binding / phosphoenolpyruvate carboxykinase (ATP) Encodes a putative phosphoenolpyruvate carboxykinase (ATP-dependent).| Identical to Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (PEP carboxykinase) (Phosphoenolpyruvate carboxylase) (PEPCK) [Arabidopsis Thaliana] (GB:Q9T074); similar to phosphoenolpyruvate carboxykinase (ATP), putative / PEP carboxykinase, putative / PEPCK, putative [Arabidopsis thaliana] (TAIR:AT5G65690.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43908.1); similar to phosphoenolpyruvate carboxykinase [Flaveria pringlei] (GB:BAB43909.1); similar to phosphoenolpyruvate carboxykinase [Flaveria trinervia] (GB:BAB43907.1); contains InterPro domain Phosphoenolpyruvate carboxykinase (ATP); (InterPro:IPR001272); contains InterPro domain Phosphoenolpyruvate carboxykinase, N-terminal; (InterPro:IPR008210) -0.0767293903014319 -1.12262536600790 0.292660300877824 1 1.38489913754432 19.2826668824165 -0.0767293903014319 0.0139893675976865
AT2G28290_at 8.45192789015917 8.583815881237 8.30795518187978 8.47005177776087 8.67297512679431 8.54776130059033 7.95312785156584 8.47701805073459 8.62309853249584 8.54312474742503 8.34866303281307 8.21429238033963 8.25242747512074 8.29123066758552 7.9205787292732 8.31864372827052 8.08142354979373 8.55798833861517 8.62878171718963 0.154826270204818 0.151474042113668 0.158141982069762 0.158967782181527 0.151939993436622 0.151870088378422 0.161720857560245 0.154612603903236 0.151600680297266 0.149492271479502 0.146271798197462 0.148239089223296 0.154421674140772 0.156633337480177 0.151839445262026 0.147676575531954 0.164266584973436 0.163154788533768 0.148669828915288 2 2 + 12079468 12079892 12079665.909 12063290 12080160 + gene protein_coding_gene FALSE TRUE AT2G28290.1|AT2G28290.2|AT2G28290.3 SYD (SPLAYED) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT3G06010.1); similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT5G19310.1); similar to RSC complex subunit Sth1 [Asper (GB:XP_754000.1); similar to unnamed protein product [Asper (GB:BAE55049.1); similar to putative STH1 protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45237.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Nuclear receptor coactivator Src-1; (InterPro:IPR008955) -0.108482791489106 -1.12255564117119 0.292688297518005 1 1.38482835848567 16.8563246259719 -0.108482791489106 0.0999844480603694
AT3G13910_at 7.46023098941591 7.75148488362423 7.40645250707755 7.71668225079924 5.56775318439546 6.07234266762986 4.23557367193262 5.18291507691404 5.09792107275007 4.65331542939489 4.75160678299649 4.73682217827996 4.77705683570279 4.49763106366941 4.27341104571572 4.77277394905102 4.25549163079695 4.65054860038905 4.58422245251661 0.260573978084083 0.260410914097885 0.258272673813259 0.258677402129915 0.253876638030298 0.26392911665493 0.257125721369371 0.255303402175355 0.256250226885041 0.253876638030298 0.256109989582113 0.254762208950086 0.264958956746060 0.261912247839447 0.253876638030298 0.253876638030298 0.258919411073630 0.253876638030298 0.253876638030298 3 3 - 4591163 4591406 4591288 4590926 4591490 - gene protein_coding_gene FALSE TRUE AT3G13910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19460.1); similar to hypothetical protein MtrDRAFT_AC152551g19v1 [Medicago truncatula] (GB:ABE86249.1) 0.172093969804241 1.12043281369295 0.293541698299422 1 1.38267495181445 11.1081314434965 0.172093969804241 0.199811646353397
AT3G08590_at 9.36662869298046 9.3758314731911 9.82859032530081 9.9854514159706 9.38556383248415 9.1312041972131 10.0945103530098 10.1260801855808 8.83966680005561 9.53374019018355 9.25013204416815 9.4583265793382 9.52732133114843 9.51068539361687 9.4917970986991 9.54433510426146 9.72505830455837 9.57805354059967 9.16968181991172 0.12583620079141 0.122360131333580 0.131695415571979 0.124394548527973 0.127061716165738 0.127401902961887 0.127661952364809 0.123180414423739 0.136135475479448 0.126102464917126 0.123731229161359 0.125005352223530 0.124981351884247 0.124664209824715 0.122349334377039 0.124293686284189 0.127444277811445 0.122404689223141 0.127810683351058 3 3|0 -|/ 2608719 2609562 2609061 2608477 2611424 - gene protein_coding_gene FALSE TRUE AT3G08590.1|AT3G08590.2 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative Identical to Probable 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 2 (EC 5.4.2.1) (Phosphoglyceromutase 2) (BPG-independent PGAM 2) (PGAM-I 2) [Arabidopsis Thaliana] (GB:Q9M9K1); similar to 2,3-biphosphoglycerate-independent phosphoglycerate mutase, putative / phosphoglyceromutase, putative [Arabidopsis thaliana] (TAIR:AT1G09780.1); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:P30792); similar to 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I) (GB:Q42908); similar to apgm [Malus x domestica] (GB:CAA06215.1); contains InterPro domain BPG-independent PGAM, N-terminal; (InterPro:IPR011258); contains InterPro domain Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; (InterPro:IPR005995); contains InterPro domain Metalloenzyme; (InterPro:IPR006124) 0.0858119188583819 1.12027836802989 0.293603864395177 1 1.38251839611374 19.0076041984326 0.0858119188583819 0.0520274884802818
AT3G07660_at 5.94397070670499 5.70508677293223 5.19512417661132 5.18552002930056 5.60873882231687 5.51096916810061 5.77315483044044 6.06222161735431 5.9910377736467 5.21922355736196 5.23485238248782 6.23672289484683 6.19387814714968 5.89144082888062 5.88495024044189 5.97586718290902 5.48680254750634 4.87019392680304 5.01808900625704 0.208166959994007 0.190590488529106 0.19506400446912 0.208018959962059 0.192104556970058 0.201741682986389 0.199241013203370 0.198114061529543 0.195125282130493 0.193097717591523 0.194289250493713 0.190590488529106 0.190590488529106 0.197290560939741 0.194859616605845 0.192714436665136 0.199168429977713 0.197439349134770 0.193314010512328 3 3 - 2445307 2445903 2445542.182 2444784 2450567 - gene protein_coding_gene FALSE TRUE AT3G07660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13990.1); similar to hydroxyproline-rich glycoprotein family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29556.1); contains InterPro domain Apoptosis inhibitory 5; (InterPro:IPR008383); contains InterPro domain Protein of unknown function DUF1296; (InterPro:IPR009719) -0.0918160131596967 -1.11991233831919 0.293751237244324 1 1.38214742790062 11.1887425811202 -0.0918160131596967 0.0670854804810975
AT1G56090_at 5.48404626620995 6.02753756852152 5.66190489892306 5.29451244642841 6.58212035069702 6.14524463540201 5.6737230937131 5.78826901241091 5.84276914758411 5.66265189784082 5.33755397092763 5.19799758230792 5.52201866146224 4.99730231430914 4.92139657343664 5.78555781283184 5.4275112420835 5.1822810819144 5.70091404789815 0.199641277113344 0.203128516051918 0.200560755052015 0.202613564276522 0.198703502402526 0.204036110887463 0.201333360343161 0.203799644100572 0.200218101262676 0.213368999727683 0.202229873435981 0.197840110936513 0.203451010915432 0.214055527608354 0.210982076416365 0.205975753392142 0.211688798173685 0.207659160170924 0.214079764405691 1 1|0 -|/ 20981661 20982301 20981913.4 20981360 20983022 - gene protein_coding_gene FALSE TRUE AT1G56090.1 tetratricopeptide repeat (TPR)-containing protein similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to H0525G02.8 [Oryza sativa (indica cultivar-group)] (GB:CAJ86311.1); similar to Os04g0616100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053875.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.130720514274888 -1.11987546597409 0.293766086247670 1 1.38211006292182 11.3481185020467 -0.130720514274888 0.137830317549512
AT3G20800_at 7.27197527839644 7.7735812837123 7.40837990184883 7.32644816751358 7.62779271545762 6.93309225048737 7.09712037858906 7.30010386045983 6.37691344873546 6.02402495420587 6.38079928446016 6.85596247745299 6.92893894422055 6.79550012854137 6.71430970738679 6.69062897635075 5.63812279879765 6.26381415325903 6.24648778674964 0.231225254372129 0.222027519959325 0.229602966044705 0.234691254499958 0.223220497092026 0.245234173885168 0.225248610289889 0.228771967249315 0.241629489779537 0.225186636197036 0.221141412302378 0.223978405431340 0.225525324980182 0.229864333957137 0.225857485567248 0.226873825201139 0.263665549583468 0.223204644187340 0.231557475768423 3 0|3 /|- 7271454 7272762 7272060 7271143 7273953 - gene protein_coding_gene FALSE TRUE AT3G20800.1 rcd1-like cell differentiation protein, putative similar to rcd1-like cell differentiation protein, putative [Arabidopsis thaliana] (TAIR:AT5G12980.1); similar to Os04g0613400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053854.1); similar to PREDICTED: similar to rcd1 (required for cell differentiation) homolog 1 [Apis mellifera] (GB:XP_623701.1); similar to PREDICTED: similar to rcd1 (required for cell differentiation) homolog 1 (S. pombe) (predicted) [Canis familiaris] (GB:XP_853052.1); contains InterPro domain Cell differentiation proteins, Rcd1-like; (InterPro:IPR007216) 0.140466943724558 1.11986527175752 0.293770191705021 1 1.38209973266191 13.7169708739110 0.140466943724558 0.153046517909891
ATCG00070_at 11.2696616605626 11.8083372559176 11.4169500220952 11.3202390328573 11.6247771852757 11.1110464605093 11.6354912484692 11.7868878307990 12.1829735405824 11.8100606682258 12.768257083066 12.7961803294036 12.6142846438584 12.5977727176189 12.2424663669552 12.6199236882083 12.0237731791439 12.5324242528664 12.0454208823277 0.105841745229132 0.0961661889372424 0.118394680713688 0.105976306501583 0.0989898615000065 0.113216786442865 0.0995912423290897 0.0998876754405234 0.102617033665939 0.102127329306971 0.0983989170272978 0.101630581420931 0.100271313096337 0.0999512743245766 0.101249606866275 0.100232146521017 0.112899172947364 0.0976408510358884 0.0969832385489232 C C + 7035 7177 7106.364 7017 7202 + gene protein_coding_gene FALSE TRUE ATCG00070.1 PSII K protein Identical to Photosystem II reaction center protein K precursor (PSII-K) (psbK) [Arabidopsis Thaliana] (GB:P56782); similar to Photosystem II reaction center protein K precursor (PSII-K) (GB:P10347); contains InterPro domain Virus capsid protein, alpha-helical; (InterPro:IPR008935); contains InterPro domain Photosystem II protein PsbK; (InterPro:IPR003687) 0.127362797587697 1.11958432594432 0.293883353332838 1 1.38181506429921 23.7652756602367 0.127362797587697 0.132515652029318
AT1G49750_at 11.6357335583268 12.0355439925918 11.4484683147052 11.5066502986795 11.0945764550806 10.9119900893775 11.4985173751997 11.7395719699607 11.7969515476760 11.6008781512684 12.0194088832902 12.3878644988411 11.8501812274267 12.0340957068392 11.6774626102572 11.9003745431736 11.5028190054221 12.3788494582263 11.6563360230573 0.0901410858976925 0.0869320750800743 0.086244675794534 0.0903477316971825 0.0878764506356326 0.0939109442079793 0.0864776154839734 0.0886044053800345 0.0994429248603802 0.0870286445842212 0.0862922192618385 0.086449296796752 0.086244675794534 0.0888955836547594 0.0906242133316822 0.0866240976494685 0.10278780116988 0.090728007626601 0.0875988471813462 1 0|1 /|- 18414964 18415390 18415136.2 18414597 18416469 - gene protein_coding_gene FALSE TRUE AT1G49750.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G19320.1); similar to Leucine-rich repeat, plant specific [Medicago truncatula] (GB:ABD32635.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) -0.101380175104179 -1.11883755193656 0.294184313551240 1 1.38105864622218 23.3106834562494 -0.101380175104179 0.0873332367678062
AT3G14310_at 10.9682281942069 11.4028086013371 9.39438821997216 9.20063210022541 10.6116619139727 10.2361390782245 8.80861929705463 9.0852918099455 10.9199659169891 10.3683215532596 11.0144375762362 11.0444323118994 10.2295199179682 10.7696176073837 10.6730120013039 10.5000283202862 9.11302391266063 10.9186789298489 10.3944457028557 0.0967532516542303 0.0906707812309096 0.101191733028553 0.101913343350431 0.0928712102968961 0.09879294296064 0.102400591800383 0.101870797088277 0.0945133672949928 0.0906707812309096 0.0906707812309096 0.0906707812309096 0.0934807343832407 0.0906707812309096 0.091905495965199 0.0906707812309096 0.106340896117261 0.0912303048550004 0.0908070413018033 3 3 - 4772304 4772790 4772540.455 4771909 4775126 - gene protein_coding_gene FALSE TRUE AT3G14310.1 ATPME3 (Arabidopsis thaliana pectin methylesterase 3) encodes a pectin methylesterase similar to ATPME2 (Arabidopsis thaliana pectin methylesterase 2) [Arabidopsis thaliana] (TAIR:AT1G53830.1); similar to pectin methyl esterase [Solanum tuberosum] (GB:AAF23892.1); similar to pectin methyl-esterase [Nicotiana benthamiana] (GB:AAO85706.1); similar to pectin methylesterase [Nicotiana tabacum] (GB:CAB95025.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Plant invertase/pectin methylesterase inhibitor; (InterPro:IPR007186); contains InterPro domain Pectinesterase; (InterPro:IPR000070); contains InterPro domain Pectinesterase inhibitor; (InterPro:IPR006501) -0.116799441520212 -1.11821239258508 0.294436449781528 1 1.38042569370393 20.5103485918173 -0.116799441520212 0.115307744969969
AT4G21160_at 9.27966777109541 9.3888475758028 9.47105268797923 9.55056972977033 9.76858576945939 8.98168604519931 9.47332168575148 9.36357941032475 8.63771565102367 8.83756179698188 9.18190892476964 9.00978651587605 9.0967664191227 9.18648522705661 8.72215644080968 9.07092075244136 8.38720070568024 8.77103989046138 8.7202109519125 0.132967022723550 0.135792501179581 0.144315066692154 0.136198855275230 0.133563697375322 0.150683781494900 0.132967022723550 0.142630874313128 0.162795007185047 0.133644082214343 0.139819106526799 0.133961617471490 0.132967022723550 0.145125051743123 0.142756033422131 0.137010435883548 0.156147356578760 0.149161675312876 0.133182424501975 4 4 + 11285628 11286516 11286052.909 11284157 11286777 + gene protein_coding_gene FALSE TRUE AT4G21160.1|AT4G21160.2|AT4G21160.3|AT4G21160.4 ZAC (ARF-GAP DOMAIN 12); ARF GTPase activator ADP-ribosylation factor GTPase-activating protein containing zinc finger and C2 domains and a novel PI-3-P-binding protein region. Binds PI-3-P. Highest expression levels in flowering tissue, rosettes and roots. A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to AGD13 (ARF-GAP DOMAIN 13) [Arabidopsis thaliana] (TAIR:AT4G05330.1); similar to C2; Arf GTPase activating protein [Medicago truncatula] (GB:ABE87454.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.131536545123156 1.11803249190560 0.294509038269076 1 1.38024359776176 18.2397201225061 0.131536545123156 0.139467214697624
AT3G52880_at 10.6370348670187 10.8288392547295 10.9848438350744 10.9869011264566 11.0113217836400 10.6079485662133 11.044994072506 10.9574715105740 10.6940368327170 10.8832648679485 11.0040678489120 10.9373841282438 10.7494669387793 10.9960287615863 11.0099607777891 10.9276775463242 10.486460979307 10.8365182296528 10.5379175793639 0.100456919377386 0.0929382934838813 0.097051655013925 0.0949107263153414 0.0926751915651246 0.102828954035923 0.094044456005397 0.094306610569883 0.104287646887751 0.094135261429069 0.0926751915651246 0.0926751915651246 0.0947814665133012 0.096128587972424 0.0926751915651246 0.0926751915651246 0.0969333342434839 0.0942377588742232 0.0946373906740886 3 3 - 19612457 19613209 19612779.273 19612190 19615432 - gene protein_coding_gene FALSE TRUE AT3G52880.1 ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1); monodehydroascorbate reductase (NADH) Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 3 (EC 1.6.5.4) (MDAR 3) [Arabidopsis Thaliana] (GB:Q9LFA3;GB:Q8LBV9); similar to monodehydroascorbate reductase, putative [Arabidopsis thaliana] (TAIR:AT5G03630.1); similar to monodehydroascorbate reductase [Brassica rapa subsp. pekinensis] (GB:AAK72107.1); similar to monodehydroascorbate reductase [Rheum australe] (GB:ABI35909.1); similar to monodehydroascorbate reductase [Brassica oleracea] (GB:BAD14934.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.0970207298100976 1.11785173863281 0.294581985095693 1 1.38006066014501 21.6691787493603 0.0970207298100976 0.07876616947488
ATCG00080_at 12.0373487642385 12.4587960137121 12.3622510497702 12.1858541238731 12.0724891615686 11.9361254210947 12.0881399025125 12.3658078655599 13.0156271758082 12.9258374532834 13.5848525969113 13.5705571130107 13.4480697103381 13.1864390897692 13.1136289549361 13.4316696044099 12.9461550786229 13.1232191616881 13.0317989425818 0.0784738915295673 0.0736586453988544 0.0763150175008931 0.0740859988446204 0.0757430577783916 0.0769511727165701 0.076035014344624 0.0781966733143061 0.08385065040355 0.0748560767928929 0.0775864722943588 0.0758264639425839 0.0812540108913173 0.0797784176840276 0.079117089229618 0.0743138920335265 0.0813373977305373 0.0796761482194985 0.075061107703895 C C + 7583 7667 7625.909 7583 7693 + gene protein_coding_gene FALSE TRUE ATCG00080.1 PSII I protein Identical to Photosystem II reaction center protein I (PSII-I) (PSII 4.8 kDa protein) (psbI) [Arabidopsis Thaliana] (GB:P62100;GB:P09970); similar to photosystem II protein I [Liriodendron tulipifera] (GB:YP_740186.1); similar to photosystem II protein I [Ranunculus macranthus] (GB:AAZ04048.1); similar to photosystem II protein I [Typha latifolia] (GB:AAZ04049.1); contains InterPro domain Photosystem II protein PsbI; (InterPro:IPR003686) 0.105571429528585 1.11779444998802 0.294605108143178 1 1.38000268364682 25.3341824232589 0.105571429528585 0.095482936550935
AT3G60530_at 5.26154023153563 5.52615012597145 3.67948902838486 4.02417216865797 4.6936878344842 4.89004715593764 3.9356417645358 4.71201956869417 4.83573456940227 4.74668371616112 5.69240723826579 5.9597843462861 5.6413793949747 5.6541678222336 5.6792977341388 5.70268820233818 5.69416914722398 5.83488658102394 5.14431966258358 0.219283428733654 0.214636089178105 0.213564956516569 0.226943228621958 0.210804806204345 0.224562831586517 0.218186253887040 0.211717129317333 0.223240031476034 0.208924012446759 0.210609827815512 0.208924012446759 0.210526675937598 0.219580168435315 0.214078400708838 0.208924012446759 0.227649071001684 0.216548792370539 0.208924012446759 3 3 + 22384614 22385085 22384783.909 22384190 22385362 + gene protein_coding_gene FALSE TRUE AT3G60530.1 zinc finger (GATA type) family protein Identical to GATA transcription factor 4 (AtGATA-4) (GATA4) [Arabidopsis Thaliana] (GB:O49743); similar to zinc finger (GATA type) family protein [Arabidopsis thaliana] (TAIR:AT2G45050.1); similar to AG-motif binding protein-3 [Nicotiana tabacum] (GB:BAC98493.1); contains InterPro domain Zinc finger, GATA-type; (InterPro:IPR000679) 0.143223016555110 1.11777259675778 0.294613929002113 1 1.37998056859498 9.9109735886217 0.143223016555110 0.157674010399794
AT1G76010_at 9.93086581204262 9.66584782328706 9.97576722254187 9.90733935864752 9.82467847167193 9.78790528762002 10.0243818687918 10.0415323654337 9.76975983016298 10.0165808127079 10.0828097579378 10.0202225219018 10.3128801869751 9.9831061760307 10.1578535058228 10.2708350999522 10.4186605171661 9.8899092883417 10.0095698205866 0.0700861817125062 0.0706759016288942 0.0705929160021712 0.0737887069691106 0.0718396946722741 0.072824816820754 0.0717087234837384 0.0724773472315422 0.0798581679812018 0.0705746712556714 0.0743277300264584 0.0695765909213272 0.0694439689040524 0.0726459188008493 0.0708361934970034 0.0706551208021362 0.072418155923278 0.0735566989650266 0.0717272089245248 1 1 - 28532440 28532741 28532616.455 28531738 28534451 - gene protein_coding_gene FALSE TRUE AT1G76010.1 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G20220.1); similar to Os09g0542000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063818.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71254.1); contains InterPro domain Alba, DNA/RNA-binding protein; (InterPro:IPR002775); contains InterPro domain Alba, DNA binding; (InterPro:IPR011574) 0.08416504750586 1.11771567622011 0.294636905448227 1 1.37992296756438 19.9317921693805 0.08416504750586 0.0478843579164181
AT1G80780_at 9.75279575569327 10.0081574580462 10.3116909963047 10.3073399114220 10.7271477295131 10.2863526883995 10.4719246159849 10.5491386541223 9.9526314940963 10.1889092375380 10.2133249123483 10.0094708786077 10.3824468441571 10.1336553160444 9.73165850442114 10.5804593458354 10.2959620634189 10.2618017028954 10.4865394833831 0.110701114421412 0.104008507773075 0.110474330015796 0.116139019364743 0.101999505243967 0.102948594337835 0.103523933534693 0.105391840714039 0.112633156903479 0.103661364924797 0.101999505243967 0.105714852160851 0.106678501774606 0.108612108992714 0.107274927314608 0.105165933645863 0.106473749727298 0.104014387282303 0.103253210870907 1 1 + 30363641 30364149 30363888.545 30363007 30364265 + gene protein_coding_gene FALSE TRUE AT1G80780.1|AT1G80780.2 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G32070.1); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.102183042370871 1.11725505646569 0.2948228908171 1 1.37945691904101 20.507047235005 0.102183042370871 0.089167800026279
AT3G17310_at 5.5793455329398 5.24421610451759 4.94469243980183 5.05463187957804 5.16148172057968 5.22109351556986 5.37870549383307 5.39297480067335 5.26212142989912 5.46354420832671 5.51240595457057 5.4039734160606 5.81982515922097 5.63921394079673 5.27950033664069 5.68058310084313 5.65062603054131 5.30282891679817 5.50804391558077 0.203448297693756 0.201932344228455 0.211018323624595 0.211769876836812 0.203479012013937 0.204135681074423 0.199214797164695 0.202871978032624 0.215648418966149 0.21097946493421 0.203582547155395 0.202753004663556 0.199165986020850 0.202519052845404 0.221746287120705 0.199165986020850 0.215163986299566 0.204297556487906 0.199165986020850 3 3 - 5909388 5909866 5909611.182 5909007 5913248 - gene protein_coding_gene FALSE TRUE AT3G17310.1|AT3G17310.2 methyltransferase family protein similar to DRM2 (DOMAINS REARRANGED METHYLTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G14620.1); similar to Os05g0133900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054563.1); similar to putative DNA methyltransferase DMT106 [Oryza sativa (japonica cultivar-group)] (GB:AAT85176.1); contains InterPro domain C-5 cytosine-specific DNA methylase; (InterPro:IPR001525) -0.0892262525550549 -1.11480128504183 0.295815227414398 1 1.37697656993051 10.7208207483714 -0.0892262525550549 0.0619515377733726
AT3G62750_at 9.03914947355275 9.12135665498709 8.7528605307466 8.6201855479872 9.82122998435591 8.73313094873181 9.67528944934299 9.27517245933531 9.11378480684493 10.2144267955469 10.1267034620632 10.0403603077580 9.73939550243022 10.1854927044146 9.75014117516107 9.74206257186422 9.22812788193272 9.58418861830647 10.2201160725305 0.199844472257717 0.198641031706486 0.221145212949284 0.213507798273332 0.187623268435099 0.205656954630151 0.199423947770538 0.192356989762485 0.197280203604641 0.187392768570773 0.187392768570773 0.187392768570773 0.187392768570773 0.194810630180514 0.187392768570773 0.197263622004179 0.222985472335431 0.199307471001161 0.190765556464963 3 3 + 23226951 23227731 23227257.167 23225347 23228021 + gene protein_coding_gene FALSE TRUE AT3G62750.1 hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27820.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G62740.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain 6-phospho-beta-galactosidase, eukaryotic; (InterPro:IPR011580); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.172886893332637 -1.11378165193423 0.296228359231226 1 1.37594705393448 18.9542976742793 -0.172886893332637 0.202437995719571
AT3G53470_at 9.21239270752877 9.18774667772648 9.18936064307617 9.04366535514158 9.6088702002673 9.25219361522757 9.7555222812722 9.5957293443986 9.424814498529 9.43422668628885 9.4546328274397 9.46492140531396 9.41169849606817 9.4481870837467 9.31030398425768 9.50393821537422 9.31075913277713 9.19276188221603 9.37115781032053 0.113810879647578 0.10722052530329 0.114914810959713 0.117736359526023 0.111437105214888 0.115729407273852 0.10722052530329 0.113840238911935 0.120809936695569 0.108177522947485 0.113663684605504 0.109567497543413 0.120144489132647 0.115345044676365 0.119620254707990 0.107319014787852 0.117088701668089 0.113846757855838 0.110772147761241 3 3 + 19833792 19834216 19833976.545 19833722 19834471 + gene protein_coding_gene FALSE TRUE AT3G53470.1|AT3G53470.2 similar to Os03g0285100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049768.1) -0.0936206263084716 -1.11356448836511 0.296316408018314 1 1.37572787363667 18.7542934581358 -0.0936206263084716 0.0723083835631328
AT2G40830_at 7.83212126533476 7.56382504335006 7.87154073629503 7.93732997199345 7.8998659917938 7.63483622063975 7.47470018222834 7.68977959820075 7.36229310815028 7.23851780708303 7.22066239648646 7.08817193731174 7.48387498854063 7.57827749904897 6.8845330684808 7.52938689394112 7.21863791473609 7.53362038501812 7.36715975280208 0.161645582750098 0.153754733772537 0.154239980301709 0.158486931527785 0.152487417038166 0.158535672286180 0.150989656937202 0.154628813121413 0.160208107001223 0.154013269129693 0.160265434145815 0.160544987169821 0.158452823079933 0.156312940359579 0.157647207646802 0.155961227167827 0.158744110404531 0.150022134770709 0.152220861357247 2 2 + 17051113 17051682 17051322.727 17049730 17051937 + gene protein_coding_gene FALSE TRUE AT2G40830.1|AT2G40830.2|AT2G40830.3 RHC1A (RING-H2 finger C1A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHC1a. similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G56580.3); similar to Os03g0351800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050120.1); similar to putative ring finger protein 126 isoform 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD68141.1); similar to Os01g0802000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044543.1); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0951377270011966 1.11135998477817 0.297211397770856 1 1.37350465133400 15.0579011386248 0.0951377270011966 0.0759887385765978
AT2G30520_at 10.4822249959055 10.8499753860422 10.9726746084746 11.1592147900536 11.7304631608699 11.3017574312340 11.9777593274080 11.7791873547147 11.4367112357048 11.0681558436938 11.4397384067808 11.4298378551050 11.7358420467509 11.4071628642754 11.0337274196208 11.7413082184406 11.3911611472213 11.2828427900054 11.1764948981123 0.0897363779806548 0.0877442726760553 0.0904974954842242 0.0913960618979663 0.0920117146790963 0.0925902314289727 0.0913966437675813 0.0909602574082595 0.0925293513306952 0.0936512143801481 0.0890168972765888 0.0877789159662134 0.0884190185646768 0.089521756566196 0.0905908059489798 0.0876359331819891 0.0923326129797827 0.0908286123390146 0.0909716762249584 2 2|0 -|/ 13010061 13012594 13011113.3 13009819 13012677 - gene protein_coding_gene FALSE TRUE AT2G30520.1|AT2G30520.2|AT2G30520.3 RPT2 (ROOT PHOTOTROPISM 2); protein binding|RPT2 (ROOT PHOTOTROPISM 2) light inducible root phototropism 2 encoding a signal transducer of the phototropic response in Arabidopsis Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;GB:Q93VA6;GB:Q9M6N8); similar to signal transducer [Arabidopsis thaliana] (TAIR:AT5G67385.1); similar to BTB/POZ; NPH3 [Medicago truncatula] (GB:ABE77699.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|Identical to Root phototropism protein 2 (RPT2) [Arabidopsis Thaliana] (GB:Q682S0;GB:O04343;GB:O04344;GB:Q93VA6;GB:Q9M6N8); similar to signal transducer [Arabidopsis thaliana] (TAIR:AT5G67385.1); similar to BTB/POZ; NPH3 [Medicago truncatula] (GB:ABE77699.1); contains InterPro domain NPH3; (InterPro:IPR004249) 0.112161332997563 1.11127240159049 0.297246999230091 1 1.37341639046219 22.6115687581855 0.112161332997563 0.108522939768938
AT3G60250_at 7.1040541692426 7.54081348890468 7.39744279487873 7.46247008593479 7.90378569978968 7.72280250871545 7.3411169120175 7.12969343703706 7.64816710035545 7.3600018818568 7.79570884842728 7.39098203257117 7.19110344154598 7.90083568952129 6.71731848526099 7.4998562570525 7.48035370345318 7.11768936436205 7.56720634734442 0.169818024135146 0.167459031290206 0.167459031290206 0.172638567042951 0.169036771626864 0.167459031290206 0.173215265851087 0.167931749111502 0.176142550292861 0.169149275675797 0.174878815228843 0.172253889870258 0.179717321738436 0.182565262868197 0.174238278361390 0.16901936817414 0.174861833084181 0.177267176761656 0.17210993287715 3 3 - 22281696 22282583 22282038.636 22281317 22283088 - gene protein_coding_gene FALSE TRUE AT3G60250.1 CKB3 (casein kinase II beta chain 3); protein kinase CK2 regulator Regulatory (beta) subunit of the protein kinase CK2. Involved in regulation of the circadian clock in Arabidopsis Identical to Casein kinase II subunit beta-3 (CK II beta-3) (CKB3) [Arabidopsis Thaliana] (GB:O81275); similar to CKB4 (CASEIN KINASE II BETA SUBUNIT 4), protein kinase CK2/ protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT2G44680.1); similar to protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum] (GB:CAD32500.1); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) 0.102155819225647 1.11039651500175 0.297603222043822 1 1.37253400428422 14.9062004308783 0.102155819225647 0.0903275810772824
AT2G01110_at 10.0564405283851 9.91739733438766 9.8577021630669 9.87805066125952 10.5431328292471 9.87013307534315 10.8970281376064 10.4206765340517 10.1623412003713 10.2836602548187 10.1871268752695 10.1625794123963 10.4087118624973 10.1452737507767 10.0076906606298 10.3172924782543 10.1752291608783 10.2843274192031 10.1339716864857 0.115029927195072 0.109411210342266 0.114195854239752 0.118662316040983 0.113720362754643 0.120619724984669 0.118709446650973 0.113306745443139 0.118141120305613 0.109930639924668 0.109411210342266 0.109411210342266 0.110707987067279 0.125272187486921 0.118720934097218 0.112922634998566 0.128826861505144 0.120367272413798 0.110126993163534 2 2|0 -|/ 83791 84514 84197.1 83260 85229 - gene protein_coding_gene FALSE TRUE AT2G01110.1 APG2 (ALBINO AND PALE GREEN 2) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC) similar to TatC [Pisum sativum] (GB:AAK93948.1); contains InterPro domain Sec-independent periplasmic protein translocase; (InterPro:IPR002033) -0.133963189724475 -1.11036533332777 0.297615909855538 1 1.37250260053325 20.3822468244418 -0.133963189724475 0.144745158477289
AT2G39010_at 11.0903282064052 11.4790090423819 11.2116871598371 11.404866240479 11.7904987733178 11.5776711603574 11.8601553058283 12.0887051043066 12.2376767661182 11.950995227308 12.7322906505201 12.4866768360891 12.6750975550361 12.5577181016039 12.3157607851601 12.2597147576055 11.7818936683993 12.6281627166897 12.0803954363142 0.0848603911958165 0.0799706239384434 0.0869600027227563 0.0804815562660664 0.0825132443683036 0.0890717951490028 0.0805611727578257 0.0814389371212828 0.0847470568355575 0.0861855926352072 0.0832283089477667 0.0807008180160057 0.0799706239384434 0.0830255695335433 0.0801707126733532 0.0799706239384434 0.0873883532291167 0.0806467406009227 0.0816631418384682 2 0|2 /|+ 16299463 16300787 16300075.222 16298555 16301112 + gene protein_coding_gene FALSE TRUE AT2G39010.1 PIP2;6/PIP2E (plasma membrane intrinsic protein 2;6); water channel Identical to Probable aquaporin PIP2.6 (Plasma membrane intrinsic protein 2e) (PIP2e) (PIP2.6) [Arabidopsis Thaliana] (GB:Q9ZV07); similar to PIP2,5/PIP2D (plasma membrane intrinsic protein 2,5), water channel [Arabidopsis thaliana] (TAIR:AT3G54820.1); similar to putative aquaporin [Vitis vinifera] (GB:ABH09326.1); similar to aquaporin [Vitis vinifera] (GB:AAV69744.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.103303329704270 1.11033042985478 0.297630112574391 1 1.37246744923586 23.8225418876815 0.103303329704270 0.0925351545778587
AT2G31660_at 5.65775215069616 5.6310404377262 5.94340305829546 5.69263656742825 5.78909879473427 5.46307699066464 6.63205521788567 6.60195290542816 5.09433214924859 5.33105368423528 5.34997193513593 5.89965511238412 5.61351217759926 5.40297086315779 5.47608611038943 5.58697075329244 5.72973724878425 5.30888629537464 5.54432815786282 0.186179470083423 0.174632606083143 0.186433067984701 0.174528853779421 0.181859736821212 0.182496396576596 0.187101525053094 0.186334746319499 0.184940915706083 0.184102645568022 0.180793172095574 0.187781749683318 0.178159205581193 0.193242596461472 0.194260189498075 0.176055761649985 0.188383652580366 0.184676899165256 0.180251351381795 2 2 + 13477550 13478391 13477936.364 13471375 13478898 + gene protein_coding_gene FALSE TRUE AT2G31660.1 SAD2 (SUPER SENSITIVE TO ABA AND DROUGHT2); protein transporter SAD2 (super sensitive to ABA and drought 2) encodes an importin beta-domain family protein likely to be involved in nuclear transport in ABA signaling. Subcellular localization of GFP-tagged SAD2 showed a predominantly nuclear localization, consistent with a role for SAD2 in nuclear transport. Mutation of SAD2 in Arabidopsis alters abscisic acid sensitivity. SAD2 was ubiquitously expressed at low levels in all tissues except flowers. SAD2 expression was not induced by ABA or stress. similar to protein transporter [Arabidopsis thaliana] (TAIR:AT3G59020.2); similar to Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) (ISS) [Ostreococcus tauri] (GB:CAL58278.1); similar to OSIGBa0137O04.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66582.1); similar to OSJNBa0008A08.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE01598.2); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin-beta, N-terminal; (InterPro:IPR001494) -0.0929552551271103 -1.10990550036858 0.297803065494191 1 1.37203956696946 11.3609829199225 -0.0929552551271103 0.0715186404296757
AT1G22970_at 6.25908614382547 5.51074846293925 6.18349951707687 6.17674904373293 6.37525109099446 5.97347236941881 6.13835549649721 5.66862496249736 5.31542573093832 5.01929980912223 5.00433766205816 5.09256622679323 5.18986564726428 5.21820821824527 5.42028783510475 4.97987109455442 5.31004569744453 5.08828963660611 5.11112786933688 0.210587126428730 0.204450698875063 0.212532714962918 0.209558284995235 0.208520664808124 0.218231099305798 0.211130370558523 0.204144133472881 0.215549162004181 0.217117084740007 0.209497800936583 0.206045210957008 0.208706161303449 0.206944710555427 0.214795190517809 0.208911640906714 0.20753287174706 0.211451480836901 0.217233152846662 1 1 - 8130906 8131385 8131113.545 8130705 8132197 - gene protein_coding_gene FALSE TRUE AT1G22970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71150.1); similar to Os05g0554500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056270.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58733.1) 0.148677718996157 1.10771468407342 0.298696025683302 1 1.36983541528844 11.1914992885684 0.148677718996157 0.167972509422144
AT4G19410_at 10.7066664145310 10.7128626079316 9.70453232794936 9.52663049279626 10.5147230390761 9.8544288073093 9.45057827744422 9.44548343085677 10.5182575970915 10.0009802772054 10.347936340378 10.5080647390721 9.65926388544844 10.1749192603946 10.4809883125530 10.0122994534019 9.33812224416252 10.0936074245443 9.87866213504043 0.108191649149125 0.106318354051134 0.114208894015004 0.106341149929564 0.111303029893850 0.116777197232198 0.113470583098922 0.106981357075002 0.112541389726332 0.107403891428313 0.105050969501819 0.104977064024122 0.112130623184822 0.108402997128448 0.107328388487031 0.106185756972235 0.118509532137235 0.106473067481098 0.109960885621534 4 4 - 10582202 10583403 10582567.636 10582032 10585769 - gene protein_coding_gene FALSE TRUE AT4G19410.1 pectinacetylesterase, putative similar to pectinacetylesterase, putative [Arabidopsis thaliana] (TAIR:AT5G45280.2); similar to OSJNBa0041A02.14 [Oryza sativa (japonica cultivar-group)] (GB:CAD41867.2); similar to pectinacetylesterase precursor [Vigna radiata var. radiata] (GB:CAA67728.1); similar to Os04g0602500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053773.1); contains InterPro domain Pectinacetylesterase; (InterPro:IPR004963) -0.11727607242979 -1.10575223177969 0.299497705087375 1 1.36786370683550 20.0942549467069 -0.11727607242979 0.118349892685526
AT4G05160_at 9.69995685934014 9.8472958091799 10.0962568911728 10.0999335427464 9.8754954139671 9.56057164993732 9.6564552381237 9.58563121176521 9.65803972732586 9.75540654820624 9.695440348669 9.4722933390099 9.56712384241094 9.55294562336339 9.67981731168371 9.69434691426362 9.56511427781928 9.6507268161395 9.5184474873276 0.101442416204004 0.0996833782018095 0.0988246498797093 0.0992257485608668 0.100709569831561 0.0955578049675341 0.101703992036890 0.0963873998304307 0.0995102142006597 0.0969210173138438 0.101713078231187 0.0997374438265935 0.100168636716018 0.101018708479690 0.100921338212107 0.0973066674605647 0.104680154406709 0.104652301729663 0.0992198146833634 4 4|0 +|/ 2665670 2666470 2666111.429 2664383 2666705 + gene protein_coding_gene FALSE TRUE AT4G05160.1 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative Encodes a peroxisomal protein involved in the activation of fatty acids through esterification with CoA. At4g05160 preferentially activates fatty acids with medium chain length (C6:0 and C7:0) as well as even-numbered long-chain fatty acids (C14:0, C16:0 and C18:0). At4g05160 was also able to catalyze the conversion of OPC-6:0 to its CoA ester and is therefore thought to be involved in the peroxisomal β-oxidation steps of jasmonic acid biosynthesis. similar to OPCL1 (OPC-8:0 COA LIGASE1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G20510.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94022.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0882455332018466 1.10530799862418 0.299679414406214 1 1.36741773159877 19.429544900424 0.0882455332018466 0.061407662585965
AT1G12320_at 7.190686535371 7.3934927027726 7.22440379945493 7.06712987572548 7.10238591542615 6.90266282113748 6.10911713860781 6.14347001024794 6.05908650937321 6.08042508415443 5.92276093659519 5.55298605476416 5.6837854260626 5.93032823950988 5.20442565456127 6.33144214944682 5.15928254255006 5.46027369463723 6.44041309824122 0.191374110828316 0.194811371790183 0.185776356603504 0.186269219848661 0.189791215614606 0.191286919159153 0.183921258524932 0.183921258524932 0.19442273148986 0.191038371391718 0.183921258524932 0.183921258524932 0.193413057778872 0.183921258524932 0.192148988272666 0.183921258524932 0.196306279834049 0.192450196597120 0.192566773136089 1 1 + 4189630 4190103 4189829.636 4189353 4190340 + gene protein_coding_gene FALSE TRUE AT1G12320.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G62840.1); similar to Os02g0455400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046773.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19988.1); contains InterPro domain Protein of unknown function DUF1442; (InterPro:IPR009902) -0.0863468185687775 -1.10525001952276 0.299703136634351 1 1.36735953475569 12.8161530087707 -0.0863468185687775 0.0565904263988342
AT1G68660_at 10.974046913509 11.0606697770194 11.2907040101811 11.3572120208272 11.4019818865476 11.0071663686935 11.7313828132132 11.9122075816921 11.2214947854967 11.5020834878268 11.3926463196157 11.1722059061103 11.4774357863751 11.5207563415259 11.1177447259497 11.6372570383817 11.2809997715584 11.2889765124499 11.4653834939883 0.0566970421619727 0.0553030485474426 0.0606714130738191 0.0575331784477293 0.0581956697652723 0.0635644611630351 0.0579017668446529 0.0557559998538904 0.0600974031877677 0.055084532288641 0.056607337023269 0.055617249572597 0.055084532288641 0.0626669490237956 0.0601431949705283 0.0569718370604752 0.0608445582020931 0.0588293748557842 0.0565405815416506 1 1 - 25781721 25782707 25781978.091 25781514 25782824 - gene protein_coding_gene FALSE TRUE AT1G68660.1|AT1G68660.2 similar to Os08g0432500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061868.1); similar to ATP-dependent Clp protease adaptor protein ClpS [Trichodesmium erythraeum IMS101] (GB:YP_720956.1); contains InterPro domain ATP-dependent Clp protease adaptor protein ClpS; (InterPro:IPR003769)|similar to Os08g0432500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061868.1); contains InterPro domain ATP-dependent Clp protease adaptor protein ClpS; (InterPro:IPR003769) -0.0953142443270911 -1.10517955570739 0.299731968999501 1 1.36728880930461 22.7205831161353 -0.0953142443270911 0.0774897985382878
AT3G02350_at 8.170212439006 8.68525111845562 7.66518558148029 8.22577555317114 8.26947121402863 8.33550215494544 9.0871099558868 9.19981623854848 8.55184872306734 8.55535460443158 9.14991644788925 9.27985207878598 8.75510671715947 8.77366704955656 9.1455338580354 8.93562019273405 8.55644980931098 9.16068149032725 8.57476537294048 0.158780781375986 0.151669982621912 0.159929830905529 0.153242345453408 0.151737937392599 0.153276868224538 0.157115260516556 0.146729393168793 0.168161506048813 0.154359078613238 0.156530014750566 0.151764457085474 0.155864529178729 0.147946924748172 0.164142754768459 0.146981071395680 0.157249044299873 0.151109910613193 0.15043457041524 3 3 + 480486 481102 480804.455 479013 481481 + gene protein_coding_gene FALSE TRUE AT3G02350.1 GAUT9 (Galacturonosyltransferase 9); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. Identical to Probable glycosyltransferase At3g02350 (EC 2.4.1.-) [Arabidopsis Thaliana] (GB:Q9FWA4); similar to QUA1 (QUASIMODO1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT3G25140.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96860.1); similar to Glycosyl transferase, family 8 [Medicago truncatula] (GB:ABE89660.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96904.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) -0.126333295036392 -1.10433017500623 0.300079690984958 1 1.36643653321342 17.2199203764176 -0.126333295036392 0.133665964775268
AT3G10770_at 10.0842980584400 10.2144768767804 10.1440416005710 10.0963691358452 10.7879611307710 10.4742204199078 10.0284624963927 10.091498470564 10.2512689230748 9.98303228545167 9.94342931027791 9.63647981742057 9.74800738767714 9.79898419088688 9.391695035226 9.84746729231573 9.78679870166978 9.59103894352061 10.2588563213548 0.106656529221931 0.104330336245983 0.107913151755931 0.104330336245983 0.107569123111570 0.111436762177042 0.112482046448828 0.108525360443968 0.112509767359113 0.107650815048773 0.108232850455611 0.105997170909473 0.108395408870253 0.111514684811339 0.115752667244355 0.107288193255498 0.107614289877924 0.108497914054627 0.105019168205796 3 3 - 3372467 3373148 3372823.636 3372269 3374276 - gene protein_coding_gene FALSE TRUE AT3G10770.1|AT3G10770.2 nucleic acid binding similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G05100.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46211.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374)|similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G05100.1); similar to Os05g0411600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055538.1); similar to DIP1 [Zea mays] (GB:AAZ73119.1); contains InterPro domain Single-stranded nucleic acid binding R3H; (InterPro:IPR001374) -0.0877170810949806 -1.10399953362295 0.300215136148973 1 1.36610489381812 20.1813527377431 -0.0877170810949806 0.0603526636088258
AT3G55330_at 10.2445156842424 10.2262264420780 9.9107992126152 9.7091275596286 10.4999898515440 10.0807582703004 10.9951141926890 10.7534687942430 10.4504644959374 10.6470175922392 11.0821340642919 11.0734667199227 10.5860004475034 10.5952448810632 11.1157611873779 10.9218702275177 10.5131964810364 10.6211626084047 10.4395488175103 0.117821642944534 0.118373020096816 0.122962458507631 0.125569898446555 0.120127172304831 0.119601316833974 0.118165423861097 0.117760603275921 0.127705520802632 0.115848428367506 0.118196334459721 0.116610291122932 0.118058562857563 0.128174259016627 0.116112609780049 0.115848428367506 0.123885913965788 0.121154853070077 0.119206651447960 3 3|0 -|/ 20525021 20525943 20525525.778 20524802 20526328 - gene protein_coding_gene FALSE TRUE AT3G55330.1 photosystem II reaction center PsbP family protein Identical to Thylakoid lumenal 25.6 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:P82538); similar to photosystem II reaction center PsbP family protein [Arabidopsis thaliana] (TAIR:AT2G39470.1); similar to PsbP family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66119.1); similar to Os10g0461100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064776.1); similar to Os08g0347500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061609.1); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683) -0.101700806440133 -1.10293387065999 0.300652007187573 1 1.36503650685885 20.9654741071019 -0.101700806440133 0.0907759668850525
AT2G47730_at 11.4430254564857 11.5741223537149 11.1789403884872 11.2282400807625 10.7827541609221 10.8275595855927 10.9201459952235 11.4303233367176 11.3488359681428 11.0415944106718 11.4087168456498 11.4819762250755 11.1515859087568 11.4484913423283 11.1484129450928 11.1688016524848 10.8585656818748 11.2424819558227 10.9262100754673 0.0703045075239763 0.070767026076396 0.0709925616255089 0.072644854129048 0.0698167414772772 0.07361269352158 0.0708569380553212 0.0710538465906441 0.0735115986128106 0.0731788970136617 0.0698167414772772 0.0698167414772772 0.0710296060031942 0.0709115794499728 0.0725036251568621 0.0703346576069608 0.076820143214972 0.0698167414772772 0.0745170669454621 2 2 + 19565499 19566278 19565965.182 19565270 19566533 + gene protein_coding_gene FALSE TRUE AT2G47730.1 ATGSTF8 (GLUTATHIONE S-TRANSFERASE 8); glutathione transferase Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Identical to Glutathione S-transferase 6 (EC 2.5.1.18) (GST class phi) (GST6) [Arabidopsis Thaliana] (GB:Q96266;GB:O82242;GB:Q9FUT2); similar to ATGSTF2 (Arabidopsis thaliana Glutathione S-transferase (class phi) 2), glutathione transferase [Arabidopsis thaliana] (TAIR:AT4G02520.1); similar to glutathione S-transferase [Vitis vinifera] (GB:ABK81651.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.102224240026300 -1.10238557712676 0.300876977065465 1 1.36448710492582 22.3452268636031 -0.102224240026300 0.0918829499496727
AT2G22330_at 9.51224046764584 9.76245029198258 8.21525444127913 8.26413080162075 8.1551981754655 7.7728134823274 9.19354035290519 9.05356725627552 6.10979149021884 7.61247704914413 7.9680977318596 8.80216551123842 8.46556140499115 8.25661652861628 7.14437100966924 8.46292808555707 8.04645681232469 8.551917573313 7.66534821287195 0.181331543097369 0.181704789296958 0.187652213403700 0.178009559731277 0.17780834565914 0.195912731879318 0.178024801768257 0.180733181695401 0.203346635812805 0.177385959694506 0.184950439714430 0.175569061428619 0.175714653987842 0.188750271860408 0.187361142720790 0.175569061428619 0.187430038435213 0.178618206432889 0.186261941693473 2 2 + 9497503 9498029 9497792.727 9495634 9498267 + gene protein_coding_gene FALSE TRUE AT2G22330.1 CYP79B3 (cytochrome P450, family 79, subfamily B, polypeptide 3); oxygen binding Encodes a cytochrome P450. Involved in tryptophan metabolism. Converts Trp to indole-3-acetaldoxime (IAOx), a precursor to IAA and indole glucosinolates. similar to CYP79B2 (cytochrome P450, family 79, subfamily B, polypeptide 2), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G39950.1); similar to cytochrome P450 [Brassica napus] (GB:AAN76810.1); similar to Cytochrome P450 79B1 (GB:O81345); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0977708094556093 -1.10209888183867 0.300994663719558 1 1.36419990940729 16.4118843668250 -0.0977708094556093 0.0831391016452663
AT4G31420_at 8.28762694982 8.31056524474837 8.23768682766243 8.12478269514668 8.73877047350126 8.46992435956573 7.8127828041035 7.9766164034852 7.31019283972216 7.95667428993623 7.41545224544116 7.6640791901831 7.41742967878523 7.53272473542641 7.35867596669497 7.61566018700595 7.30750710361027 7.49832222794357 7.53017455477552 0.198525583758805 0.191535892399912 0.198562597736124 0.19235766235557 0.191587217736277 0.196704359897184 0.195853361178385 0.192394637659027 0.209353679896942 0.194006076641094 0.195508200994385 0.192456564563982 0.196240518141058 0.186041292328648 0.192041804906448 0.189207906903655 0.194577941989126 0.194080419825526 0.192719694917396 4 4|0 -|/ 15245993 15246827 15246367.1 15245822 15247933 - gene protein_coding_gene FALSE TRUE AT4G31420.1|AT4G31420.2 zinc finger (C2H2 type) family protein similar to FZF, transcription factor [Arabidopsis thaliana] (TAIR:AT2G24500.1); similar to Os06g0693500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058435.1); similar to putative C2H2-type zinc finger protein [Brassica rapa subsp. pekinensis] (GB:AAO32058.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) 0.0865553802523928 1.10092086467578 0.301478614219692 1 1.36302040898779 15.7824671256030 0.0865553802523928 0.0580167379414867
AT2G31370_at 6.40026956655704 7.11938348459531 7.22012380992416 7.35854089119839 7.27953955207883 6.86484336418743 7.52263879146534 7.53331077654866 6.83860281232869 6.56408882768478 7.08945050235919 6.84482601789146 7.02207257224936 6.99910134868048 6.87268327700382 7.34084676763276 6.33553841084521 6.83946575729504 6.66166144918634 0.200154349991557 0.205542602631276 0.201417688939577 0.204269512892760 0.206169854512238 0.20344053747991 0.210587327325839 0.201094829892459 0.215743304471524 0.207889400424706 0.204536055621558 0.200757387965452 0.200462669668894 0.204543842106021 0.204441358228030 0.199447643662782 0.213990017865548 0.211793138094667 0.209686571153850 2 2 + 13387362 13388118 13387807.545 13386021 13388600 + gene protein_coding_gene FALSE TRUE AT2G31370.1|AT2G31370.2|AT2G31370.3|AT2G31370.4|AT2G31370.5 bZIP transcription factor (POSF21)|DNA binding / transcription factor Identical to Probable transcription factor PosF21 (AtbZIP59) (POSF21) [Arabidopsis Thaliana] (GB:Q04088); similar to bZIP transcription factor, putative (bZIP69) [Arabidopsis thaliana] (TAIR:AT1G06070.1); similar to Transcription factor RF2a (GB:Q69IL4); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.133370817450170 1.10072852169422 0.301557690473403 1 1.36282791126874 13.9653891686417 0.133370817450170 0.145651068417402
AT1G52320_at 7.71640438276904 8.15255709648264 7.95205877256065 8.27166868805038 8.11985226589838 7.77384757383298 7.37368973532747 7.51079759723725 7.48810835787948 7.75980395008429 7.66132666057252 7.50074562121303 7.556718818801 7.7088840723956 7.38289221008958 8.0630437465419 7.49430258618182 7.68498828228843 7.98605682030456 0.188908003961039 0.189540417192638 0.195383352675015 0.189351576871731 0.194634776164088 0.197233364819571 0.188217956227076 0.194330242688126 0.201487973501829 0.191127872047115 0.191143124863055 0.187039121828809 0.188144864400711 0.199109256919964 0.198548745498550 0.190621966036385 0.205782291166943 0.198591209895858 0.187039121828809 1 1 + 19490281 19490848 19490568.727 19488024 19491148 + gene protein_coding_gene FALSE TRUE AT1G52320.1|AT1G52320.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25590.1); similar to Spectrin repeat [Medicago truncatula] (GB:ABE93358.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25590.1); similar to Spectrin repeat [Medicago truncatula] (GB:ABE93358.1); similar to Os05g0394200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055459.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) 0.113975497901269 1.10061878935897 0.301602811084937 1 1.36271810165664 15.5469940769448 0.113975497901269 0.113597898028461
AT1G31330_at 13.6566562388535 13.8147747162873 13.6491558468714 13.6781821131452 13.7301333402661 13.574571308643 13.9435143896660 14.1243894735996 14.4472464654754 14.3641923099698 14.5842105784633 14.5955660817801 14.4854974886337 14.4908776519764 14.3122955892429 14.3754101591663 13.8240404479922 14.6346201983357 14.2476281076444 0.05915468871596 0.0550276947490239 0.0607960767384663 0.0577189656973735 0.055107624778087 0.0583556866875275 0.0588977860531456 0.0558667589688929 0.0662297578590341 0.0553209876006361 0.056430987976227 0.0550276947490239 0.0564195595187979 0.0579299912807202 0.0602374158940005 0.0559514612149968 0.0650726805465503 0.0566423714980553 0.0560029670778072 1 1 - 11215047 11215830 11215459.636 11214805 11216018 - gene protein_coding_gene FALSE TRUE AT1G31330.1 PSAF (photosystem I subunit F) Encodes subunit F of photosystem I. similar to photosystem I reaction center subunit III [Vigna radiata] (GB:AAD27880.2); contains InterPro domain Photosystem I reaction center protein PsaF, subunit III; (InterPro:IPR003666) -0.0835152861422586 -1.10054417604418 0.301633494223348 1 1.36264344036243 28.1543407128225 -0.0835152861422586 0.0497842262180545
AT4G19510_at 5.26743815978809 5.90787444631998 5.90276687881711 5.90353695884013 6.14915564858605 5.466799585325 5.92264257961663 6.0079353156226 5.52151278153594 6.01167320641574 5.48878862191372 5.36173840605539 5.61201870934988 5.31405561030906 4.80328724415219 5.71234551280733 5.52843334652295 5.23107792004276 5.71355095301705 0.219788981215005 0.219536213028208 0.229016301184906 0.228233753577631 0.218734838085692 0.217824178334127 0.216636165548741 0.226818033625073 0.227254546801959 0.222844456211242 0.216636165548741 0.222974485940044 0.216636165548741 0.222964239440221 0.232600378859621 0.232758016224790 0.233434623573978 0.226305614114959 0.222171667091932 4 4 + 10637576 10638933 10638101.545 10633715 10639011 + gene protein_coding_gene FALSE TRUE AT4G19510.1|AT4G19510.2 disease resistance protein (TIR-NBS-LRR class), putative similar to CSA1 (CONSTITUTIVE SHADE-AVOIDANCE1), ATP binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT5G17880.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G36150.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G12010.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); similar to nematode resistance-like protein [Solanum tuberosum] (GB:AAP44393.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.144175999853416 -1.10021462425498 0.301769044865729 1 1.36231372087492 11.3812089391396 -0.144175999853416 0.162620184699773
AT1G59520_at 5.90365595972123 6.13504695890105 6.04470000129501 5.68472232878452 6.90353438355732 5.49250240559604 5.87071735700888 6.08155687620718 6.23216801813783 5.80369365276782 6.51782110801478 6.14247305622469 6.6419581029255 6.79342937366316 6.00709763908538 6.5115329762649 6.22218586827301 5.96168161743933 5.85927587131462 0.242963296116736 0.241648410190238 0.245154931448306 0.242562385982051 0.258326990642507 0.267918079185931 0.247098900091983 0.238218768866605 0.268187474963045 0.250147316451233 0.240865248122565 0.24621704633403 0.242054336650614 0.240478942963531 0.238218768866605 0.238534737278154 0.260317024703795 0.259373720993898 0.246274289004788 1 1 + 21867855 21869523 21868959.727 21865049 21869855 + gene protein_coding_gene FALSE TRUE AT1G59520.1|AT1G59520.2|AT1G59520.3 CW7 Encodes CW7. similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAL91603.1); similar to Os07g0248800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059288.1); similar to Os04g0183100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052185.1); contains domain gb def: CW7 protein (At1g59520) (PTHR21477:SF3); contains domain FAMILY NOT NAMED (PTHR21477)|similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAL91603.1); similar to OSIGBa0140C02.4 [Oryza sativa (indica cultivar-group)] (GB:CAH65852.1); similar to Os07g0248800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059288.1); contains domain gb def: CW7 protein (At1g59520) (PTHR21477:SF3); contains domain FAMILY NOT NAMED (PTHR21477) 0.209173556089111 1.09908504251589 0.302234027245878 1 1.36118411172836 12.1719636914555 0.209173556089111 0.257763760778123
AT1G21500_at 10.5062663869678 10.7297979203403 10.2316694158247 10.2472507550811 10.5450491743279 10.4989834613607 10.9668042635557 11.2197407871027 11.8115683532571 11.6255303131742 12.3099407707905 12.2515561063709 11.7890445975135 12.1102712241033 12.2828841481847 12.0750064375579 11.2861557865108 12.0187032709576 11.7050869915711 0.0822997100709336 0.0793469560308652 0.0836446716667554 0.0847635109855242 0.0878041323627572 0.0887904979123143 0.0792095894183455 0.0819884408891417 0.0852444736701494 0.0843408759016366 0.0795470238062222 0.0788055518129216 0.0788055518129216 0.0909595940172913 0.0800088576963568 0.0807550081225177 0.0912245988563913 0.081654303138048 0.0823391698946075 1 1 - 7530050 7530823 7530230 7529871 7531014 - gene protein_coding_gene FALSE TRUE AT1G21500.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83904.1) -0.0867653655475853 -1.09864091998730 0.302417001137894 1 1.36074021067014 22.4829488599449 -0.0867653655475853 0.0590185061703194
AT4G07410_at 5.23220626937463 5.120158404299 4.98455651977181 4.45389968381301 5.31125792041384 4.41322814211515 5.79554349881867 5.13948796918549 5.08047351004227 4.567288943352 5.02398708434904 5.56026035676168 4.81976041109729 4.75450439001857 5.22783632686903 5.23082446407187 5.25318020392004 4.9572608906969 5.13983943569942 0.236558415071638 0.224250019892379 0.233875727021437 0.227540243227682 0.224250019892379 0.228578065737873 0.224250019892379 0.22827889249081 0.245846680448791 0.227904594561949 0.232950655962669 0.224883407832739 0.224250019892379 0.233241772546456 0.241000562954817 0.232308179760612 0.249217121321042 0.231463418805052 0.224250019892379 4 4 - 4201541 4202120 4201911.909 4201246 4205221 - gene protein_coding_gene FALSE TRUE AT4G07410.1|AT4G07410.2 transducin family protein / WD-40 repeat family protein similar to transducin-related / WD-40 repeat protein-related [Arabidopsis thaliana] (TAIR:AT1G27470.1); similar to Os03g0735100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051185.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT78790.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.178431166307921 -1.09787839224004 0.302731358492066 1 1.35997836911669 10.0726184988094 -0.178431166307921 0.214127979865611
AT1G42960_at 10.1738401575388 10.4152651164782 10.2348520099692 10.3878819081561 10.2518074675489 10.2960054690514 10.4409188192174 10.7352980625103 10.0109037005263 10.5808382868611 10.9158928668111 10.6377260884679 10.5277723749527 10.6768823582791 10.6952379552760 10.7750115545462 10.6515882407814 10.6787298906188 10.4954271010993 0.0986661766540643 0.0939258664693474 0.100150720344700 0.0988504475213009 0.100614750508201 0.108520256182407 0.100681282605451 0.097311888903739 0.107768074991250 0.0941200311262306 0.0995127668972368 0.0939258664693474 0.0984491396169979 0.101293860754361 0.103753571897174 0.0939258664693474 0.102003462003456 0.098447030284841 0.0951375283334176 1 0|1 /|+ 16128683 16129482 16129096.5 16128222 16129727 + gene protein_coding_gene FALSE TRUE AT1G42960.1 expressed protein localized to the inner membrane of the chloroplast. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16660.1); similar to hypothetical protein [Plantago major] (GB:CAH59416.1) 0.0918858223998056 1.09766863783155 0.302817876383314 1 1.35976887130396 20.8956060574982 0.0918858223998056 0.0714187105594092
AT3G55250_at 9.78289122581675 9.78459819455663 9.61167270748222 9.44892348687289 9.69346820230903 9.6251696306224 10.3052896770967 10.4133337495528 9.98980530005204 10.1531669869028 10.2657035615299 10.3227029749081 10.1836153721241 10.487957478186 10.1713135183172 10.5128808240809 10.3122025949708 10.0640085210736 9.7709298889103 0.100836860292740 0.0954586414610505 0.0980041819097435 0.10632493320052 0.0982284368396604 0.098728753036344 0.100730915470858 0.100599872601460 0.113778528750147 0.0976611439229389 0.102144012475163 0.0959079865391575 0.102254942823719 0.101355702156248 0.0990090184019742 0.0960235448382483 0.102150381027119 0.105812339809935 0.102788086015804 3 3 + 20490514 20491120 20490771.364 20490266 20491611 + gene protein_coding_gene FALSE TRUE AT3G55250.1 similar to calcium homeostasis regulator CHoR1 [Solanum tuberosum] (GB:AAQ14193.1) -0.0789861622868202 -1.09649085305489 0.303304042171879 1 1.35859307126542 19.9638427747573 -0.0789861622868202 0.0358137197633799
AT3G09085_at 6.72556583263016 7.31748851089992 7.07963936365121 7.42828035918971 8.4072990016041 7.64981367083128 6.92539784365143 7.04550221626504 7.29636185177212 6.79254622046793 6.61128400093807 6.35301947626917 6.72103402882217 6.99045596816327 6.380678799135 7.19279401095838 6.65734871293549 6.81506722474182 7.04695161040984 0.196726916409221 0.200559887762912 0.207734917878817 0.200945782029158 0.209056799612362 0.21935656336772 0.209233585561728 0.199241984446642 0.216802635098425 0.203088960963161 0.203169237506990 0.199548563879014 0.200137347916007 0.216969670622717 0.199092529807463 0.198866959681094 0.220394786756890 0.199247692140757 0.200581012657956 3 3 + 2782256 2782480 2782350.364 2782138 2782745 + gene protein_coding_gene FALSE TRUE AT3G09085.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06841.1) 0.153846607409782 1.09616541721133 0.303438483953614 1 1.35826834673241 14.2026217691547 0.153846607409782 0.178181781929079
AT1G77740_at 7.77737941393959 8.27821073359434 7.76105878273465 7.89506296730072 8.11145773297394 7.98814959299621 9.0678335607972 8.55449261072925 7.6013193133032 7.98469160399796 8.6288346650371 8.68272994249279 8.28721147993517 7.92197116093523 7.77728485075365 8.39344265590629 8.20678048695052 7.70811634793137 8.30619164753628 0.20168951062822 0.206450896673915 0.224064990113974 0.219610564525562 0.200417220841504 0.222260613806615 0.206434850046625 0.207091682638979 0.218473322106117 0.213821075934289 0.206310342140204 0.213997036872951 0.200417220841504 0.206480138696128 0.209262227955469 0.205531060059986 0.215207914092991 0.218404397564463 0.207946451562821 1 1 + 29227624 29228721 29228387.727 29225432 29229114 + gene protein_coding_gene FALSE TRUE AT1G77740.1 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative Identical to Phosphatidylinositol-4-phosphate 5-kinase 2 (EC 2.7.1.68) (AtPIP5K2) (1-phosphatidylinositol-4-phosphate kinase 2) (PtdIns(4)P-5-kinase 2) (Diphosphoinositide kinase 2) (PIP5K2) [Arabidopsis Thaliana] (GB:Q8L796;GB:Q9CA20); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56960.1); similar to ATPIP5K1 (Arabidopsis thaliana 1-phosphatidylinositol-4-phosphate 5-kinase 1), 1-phosphatidylinositol-4-phosphate 5-kinase [Arabidopsis thaliana] (TAIR:AT1G21980.1); similar to 1-phosphatidylinositol-4-phosphate 5-kinase, putative / PIP kinase, putative / PtdIns(4)P-5-kinase, putative / diphosphoinositide kinase, putative [Arabidopsis thaliana] (TAIR:AT2G26420.1); similar to putative phosphatidylinositol 4-phosphate 5-kinase [Nicotiana rustica] (GB:AAF80332.1); similar to putative phosphatidylinositol-4-phosphate-5-kinase [Zea mays] (GB:AAL76002.1); similar to Phosphatidylinositol-4-phosphate 5-kinase [Medicago truncatula] (GB:ABE83677.1); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.121908941816717 -1.09534885831459 0.303776021813703 1 1.35745388332634 16.2616376595609 -0.121908941816717 0.128050273404084
AT3G13222_at 5.02246774957454 5.12302270367516 4.99467181962395 4.87402260015375 4.45861492776602 4.71906979877494 4.03765206534947 4.63685282281434 4.97271862226995 4.87748815249392 4.81687955500807 4.84220599447971 4.48891899134323 4.46157564628594 3.88620221894774 5.04465650733967 4.59886109777512 4.7493241237731 4.84205766025785 0.228006908339647 0.220380380345620 0.248020401769262 0.220380380345620 0.224976560823714 0.221051892957958 0.221401655664314 0.231751967446341 0.240179019879764 0.231581584067988 0.220380380345620 0.225190008307888 0.235334830381552 0.229221376491754 0.233690704059521 0.224020895691221 0.228222249028996 0.226935509257257 0.230657165008978 3 3 - 4251335 4251953 4251604.9 4251021 4254274 - gene protein_coding_gene FALSE TRUE AT3G13222.1 GIP1 (GBF-INTERACTING PROTEIN 1) Encodes a protein that binds to G-box binding transcription factors and enhances their binding affinities to G-box in vitro. This protein localizes to the nucleus and is expressed predominantly in the root. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55820.1); similar to hydroxyproline-rich glycoprotein family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29556.1); contains InterPro domain Protein of unknown function DUF1296; (InterPro:IPR009719) -0.114873755122605 -1.09436828894862 0.304181746883175 1 1.35647641788156 9.48754655857135 -0.114873755122605 0.116287817953838
AT4G14430_at 6.31943928974149 6.29632190276328 6.49980300588117 6.5469810889592 6.73960971136871 6.05216110625293 6.14356037638297 6.21439349140066 5.91313653367677 6.39303300707864 6.03735137395366 6.11216202482123 5.94403575643146 5.8578035043567 6.48073599844478 6.59414436118174 6.08873010947131 5.70000232195037 5.94661878803181 0.186861235817779 0.190780596181585 0.197908043293149 0.201018029058715 0.192729774811504 0.19886712923641 0.198444689363 0.192535856789545 0.197003891750833 0.18718242789522 0.190344985132154 0.189158156705084 0.188731953579323 0.193207618881793 0.191834679585227 0.18502538833492 0.193448217648241 0.203820104312042 0.186651099388018 4 4 - 8304981 8305455 8305225.727 8304596 8305701 - gene protein_coding_gene FALSE TRUE AT4G14430.1 enoyl-CoA hydratase/isomerase family protein similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G14440.1); similar to Enoyl-CoA hydratase/isomerase [Medicago truncatula] (GB:ABD28677.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.116908934053701 1.09354816391076 0.304521413374265 1 1.35565938162696 12.4446004753882 0.116908934053701 0.119941127589390
AT4G14210_at 9.79709801608625 9.7945963905523 9.92313598647116 9.82452366045824 10.1453325845764 9.82629913121442 10.3925047179941 10.260926756288 10.1901760761800 10.3476923274400 10.1898451574402 10.2238714427230 10.2983351817811 10.1746666167277 10.0511666564419 10.5219786480627 10.3306806169066 10.1734471826656 10.3291035030991 0.0936421896064814 0.0902567308997091 0.0897428665765209 0.0969308743113548 0.093176651104852 0.0955665498863174 0.0897234750054594 0.0945456237993486 0.103971118415758 0.0932229447990513 0.0974808944665683 0.0915725919229746 0.0929440542707509 0.0970977345608271 0.0945913329113472 0.0929066821127163 0.101412248150136 0.0954944087991418 0.0921704294218283 4 4|0 -|/ 8190452 8191473 8190923.9 8190207 8195260 - gene protein_coding_gene FALSE TRUE AT4G14210.1|AT4G14210.2 PDS3 (PHYTOENE DESATURASE) Encodes phytoene desaturase (phytoene dehydrogenase), an enzyme that catalyzes the desaturation of phytoene to zeta-carotene during carotenoid biosynthesis. Processed protein is localized to the plastid. Identical to Phytoene dehydrogenase, chloroplast precursor (EC 1.14.99.-) (Phytoene desaturase) (PDS) [Arabidopsis Thaliana] (GB:Q07356); similar to ZDS (ZETA-CAROTENE DESATURASE), carotene 7,8-desaturase [Arabidopsis thaliana] (TAIR:AT3G04870.2); similar to Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) (GB:P28554); similar to phytoene desaturase [Prunus armeniaca] (GB:AAX33347.1); similar to Phytoene dehydrogenase, chloroplast precursor (Phytoene desaturase) (GB:P28553); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Flavin-containing amine oxidase; (InterPro:IPR001613); contains InterPro domain Amine oxidase; (InterPro:IPR002937) -0.0874751636397701 -1.09210859450186 0.305118353584899 1 1.35422632031848 20.2627969421634 -0.0874751636397701 0.0621133071541879
AT2G47690_at 6.10282778207544 6.15884556347243 5.83162067622438 5.96773221737571 5.98553969039539 5.33576722432755 6.05756850407494 5.868919767912 5.48859108473431 5.77044067646391 5.88074093313657 5.87130561376327 5.82733552187457 5.70270099663123 5.79829515986209 5.60107986263981 5.61053853026857 5.51353433539504 5.81730613337126 0.173792999251726 0.175727628048467 0.172168018353217 0.172711224248873 0.177690070682105 0.182093870817304 0.170024353248864 0.170876898740148 0.174372262282719 0.175347212862073 0.170718152782308 0.175442397753916 0.181587913527213 0.173804735248547 0.179893269338596 0.170224778200661 0.184861651166035 0.174084267087196 0.174723671502189 2 2 + 19558335 19559090 19558497.273 19558333 19559425 + gene protein_coding_gene FALSE TRUE AT2G47690.1 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT3G62790.1); similar to fiber protein Fb14 [Gossypium barbadense] (GB:AAP34361.1) -0.116648357314856 -1.09172818164708 0.30527625150412 1 1.35384785863889 11.6225046785920 -0.116648357314856 0.119827946187488
AT1G51060_at 7.81483608143606 7.95458219825824 8.0015609134136 8.05045981093312 7.80064271556612 7.54500644098985 8.2584303004647 8.40190892848948 8.33604958710103 8.45634221761723 8.50272602175956 8.67070039897779 7.97738419100383 8.38393656525556 8.7144447167966 8.33434162059518 8.09350132802582 8.13701633177451 8.00063555208555 0.128441256588421 0.127297493074505 0.132869416903310 0.130627174406901 0.128299354886863 0.131299649692958 0.126559599286013 0.124069963077473 0.133866098028747 0.123426273769548 0.128388178703924 0.125054272027991 0.132007481822212 0.123662524279792 0.125635000292744 0.123426273769548 0.129859639059832 0.133257639580425 0.130570046300739 1 1 + 18930616 18931087 18930859.455 18930544 18931314 + gene protein_coding_gene FALSE TRUE AT1G51060.1 histone H2A, putative Identical to Probable histone H2A.1 (HTA10) [Arabidopsis Thaliana] (GB:Q9C681); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT3G20670.1); similar to Protein H2A.7 (wcH2A-4) (wcH2A-10) (GB:Q43312); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.08530398121539 -1.09072819013125 0.305691624453600 1 1.35285345786206 16.2864778482147 -0.08530398121539 0.0568336653972085
AT1G33811_at 6.243201847499 7.0660365954405 2.73775674766528 2.82412570243915 5.95220328782487 5.92009261585108 2.65207895522302 3.41851620429882 5.42593272305695 3.54882172895760 5.16074481756334 7.79022743582313 3.81808808543497 3.90338671836555 6.61069513149194 5.23147261171073 3.06052386075078 5.03633336901519 5.78203892670915 0.243355560253251 0.236248431731986 0.246349653725239 0.236253512373715 0.236252860206063 0.241362140329748 0.234975567471214 0.244832132453704 0.241420750284495 0.242602702951713 0.237517809956957 0.234904307903695 0.24112077829435 0.234904307903695 0.245560914055354 0.236775534261616 0.236757570052992 0.236357355059326 0.234904307903695 1 1|0 +|/ 12268927 12269604 12269337.4 12267846 12269893 + gene protein_coding_gene FALSE TRUE AT1G33811.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT5G45670.1); similar to GDSL-lipase protein [Capsicum annuum] (GB:AAX20033.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.164455467321012 -1.09072100380670 0.305694611091586 1 1.35284631413642 9.59943405953556 -0.164455467321012 0.195250896045566
AT1G32130_at 9.3814407824367 9.65424193454962 9.6439066280913 9.72915033946671 9.91667159009902 9.53621563043546 9.57718975866015 9.31180091323033 9.12853920650947 9.16961974834964 9.24449612428607 9.31963071002482 9.03971889826017 9.11014802116607 8.74015448096082 9.18442048468198 9.19981895988856 9.30313706520894 9.1920315451081 0.121006069387926 0.114954827413872 0.123570156595653 0.116854299270973 0.114954827413872 0.121585031263363 0.121958365392440 0.117105839093417 0.128564237948942 0.119581774892196 0.116521788939246 0.116457240118083 0.116078481465883 0.12153252789465 0.12382104054394 0.118718545826096 0.129279643716154 0.120398233597642 0.118473202513444 1 1|0 -|/ 11559138 11560351 11559603.444 11558861 11561845 - gene protein_coding_gene FALSE TRUE AT1G32130.1 similar to IWS1 C-terminus family protein [Arabidopsis thaliana] (TAIR:AT4G19000.1); similar to Os01g0147200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042011.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53710.1); contains InterPro domain IWS1, C-terminal; (InterPro:IPR008654); contains InterPro domain Transcription factors TFIIS, elongin A, CRSP70, conserved; (InterPro:IPR010990) 0.102305729770599 1.08982667902037 0.306066471802661 1 1.35195756060588 18.7468709103122 0.102305729770599 0.094289375583735
AT3G07870_at 6.94104547200164 7.19885061125338 7.4527166764651 7.6018324755582 7.87951792640713 7.58763032568406 6.4351032458382 6.79003644940573 7.12785092511321 6.66265287654171 6.15992823948711 5.82633533816282 6.4145403289897 6.67272870838894 5.69095321023703 6.979992400642 6.64714659436996 6.19578904197836 6.93210251892473 0.179372906235049 0.184502059604950 0.18543843262554 0.184770974260379 0.182534787306369 0.190752894745853 0.192790821567295 0.181839078252406 0.196116958816881 0.184437101267601 0.179372906235049 0.181096072914916 0.185004146410934 0.187957552388742 0.179372906235049 0.179372906235049 0.186953820446850 0.182727589152475 0.180416644022857 3 3 + 2511531 2512103 2511795 2510789 2512400 + gene protein_coding_gene FALSE TRUE AT3G07870.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23880.1); similar to Cyclin-like F-box; F-box protein interaction domain [Medicago truncatula] (GB:ABE89134.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.102528349496327 1.08954747512041 0.306182637743125 1 1.35168020574716 13.8513227343143 0.102528349496327 0.0947661878880683
AT1G05350_at 5.65935884484821 5.83398296617588 5.63076199269185 5.41116954989311 5.11084967274513 4.82149668430126 5.02052833266225 4.63352514050946 5.07471246242396 5.20137780842529 5.14852219306792 5.89703372016742 4.66419875766239 4.68033902842227 5.31928546825099 5.14219183730645 4.71535901613254 5.02335699000133 5.43621780366737 0.240456882277396 0.231443168079511 0.237417023215076 0.238039671155806 0.234728143923552 0.238246021975862 0.227779895164334 0.234695188909958 0.238763884609261 0.233490884329517 0.227185883976497 0.229012542640968 0.238755278661038 0.233140486871166 0.234628091279884 0.227185883976497 0.236784917279969 0.234881232481414 0.233226882564394 1 0|1 /|- 1560893 1561970 1561327.429 1560677 1564122 - gene protein_coding_gene FALSE TRUE AT1G05350.1 thiF family protein similar to SAE2 (SUMO-ACTIVATING ENZYME 2) [Arabidopsis thaliana] (TAIR:AT2G21470.2); similar to Os02g0506500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046919.1); similar to putative Ubiquitin activating enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAD23175.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594) -0.103464747301787 -1.08873573810255 0.306520566954899 1 1.35087414120725 10.4208200985860 -0.103464747301787 0.096695762203933
AT4G30200_at 8.80924581540006 8.99431609732935 9.22493041745218 9.13909073650227 9.4296305068851 9.31285662281858 9.23721517182017 9.27724074049834 9.12026330791462 9.06023931198165 9.19927790532547 9.11470251881693 9.10793026147313 9.05086235251228 8.96339185403217 9.24112881300836 9.26018473781469 8.97936645516253 9.27518394283098 0.0928609342878459 0.0917841203533176 0.0924468967467798 0.096821877196104 0.0917841203533176 0.0955311669874912 0.0951964354472163 0.0922514301685006 0.103604658150618 0.0980179991032109 0.0926234801348601 0.093786017702373 0.0967343524103388 0.096121071265158 0.0917841203533176 0.0996419712346412 0.0969204841369372 0.097968760998831 0.0917841203533176 4 4 - 14786879 14787399 14787090 14786639 14790509 - gene protein_coding_gene FALSE TRUE AT4G30200.1|AT4G30200.2|AT4G30200.3 similar to VIN3 (VERNALIZATION INSENSITIVE 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G57380.1); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE86602.1); contains InterPro domain Fibronectin, type III; (InterPro:IPR003961)|similar to VIN3 (VERNALIZATION INSENSITIVE 3), zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G57380.1); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE86602.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Fibronectin, type III; (InterPro:IPR003961) 0.0799163530058327 1.08861432527256 0.306571136766101 1 1.35075361479230 18.3113163301769 0.0799163530058327 0.0412646101528644
AT1G59890_at 4.81526615659227 4.86351548085461 5.00887157086564 5.23368762081802 4.95601154460991 4.93750570782842 4.66995049138717 4.81477799930139 4.53665299539048 5.05583593919425 4.76278342152852 5.08198335271397 4.99264504327944 4.82903403825941 4.8602444408518 5.00262470664167 5.14257997768780 4.3325477050409 5.27338026447222 0.211035663472117 0.206475285163305 0.210143442861307 0.208116578323574 0.213528760972121 0.214153192099573 0.207240272257753 0.205891395876865 0.220448959761722 0.207138838685829 0.210123588745703 0.207975256247428 0.217936005475521 0.208204674519229 0.227110692249759 0.203429685628284 0.210454180685667 0.207441029168408 0.218830568643370 1 1|0 +|/ 22053568 22054302 22054002.444 22047495 22054726 + gene protein_coding_gene FALSE TRUE AT1G59890.1 paired amphipathic helix repeat-containing protein similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G70060.1); similar to ATSIN3/SIN3 (Arabidopsis thaliana sin3 homolog) [Arabidopsis thaliana] (TAIR:AT1G24190.1); similar to paired amphipathic helix repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G10450.1); similar to Paired amphipathic helix [Medicago truncatula] (GB:ABE90181.1); contains InterPro domain Histone deacetylase interacting; (InterPro:IPR013194); contains InterPro domain Paired amphipathic helix; (InterPro:IPR003822) 0.0817035908640452 1.08828367413592 0.306708889924966 1 1.35042542780179 9.82787085591689 0.0817035908640452 0.0471356325453599
AT1G18670_at 3.82995331170891 4.53698253556284 3.93671540351772 4.2423207442919 4.09059007210436 3.87269779063129 5.22679694159031 5.23987222814755 4.96450168391395 4.36988346830199 5.83478556081212 5.50213429474893 5.543488505124 5.65677322146459 5.36482361988389 4.76790749986236 4.81329170597299 4.39439863752515 5.11562550417882 0.298535965854451 0.299893517372368 0.319354899167218 0.301253875478324 0.292610397403923 0.309086849092839 0.300595202100905 0.300090637248856 0.314587039096823 0.304036206409254 0.292610397403923 0.294366366117656 0.298754479557459 0.298388526822098 0.296480493851585 0.300543747675579 0.316175810046546 0.313933067436111 0.292610397403923 1 1|0 -|/ 6428033 6428625 6428274.625 6426890 6430688 - gene protein_coding_gene FALSE TRUE AT1G18670.1 IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1); kinase Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. similar to ATP binding / protein kinase [Arabidopsis thaliana] (TAIR:AT1G74330.1); similar to Protein kinase [Medicago truncatula] (GB:ABE79143.1); similar to Os07g0596600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060172.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.127395044870044 -1.08764051065143 0.306976978692871 1 1.34978726749133 9.3976764281806 -0.127395044870044 0.138544602165756
ATCG00770_at 10.2985378012015 10.1224282723184 10.2951709983485 10.0109314242906 10.8387708823143 10.0184982110038 11.4334378769993 10.3697149569203 11.1044697098452 11.1332807054363 11.9239108465819 12.0566625507416 11.6246765758726 11.8285353785936 11.7618721675927 11.9616133016343 11.2456488909982 11.1835114867301 10.8964186046613 0.123310212269116 0.126382190275746 0.122972728439618 0.128782054663990 0.126301224566014 0.129413507155172 0.125366545414635 0.122896707247506 0.127081492551832 0.119026395152135 0.123649486035632 0.123779613366918 0.121693021930184 0.127557299059446 0.122178110173973 0.123640889508148 0.126992263654322 0.122396506683585 0.129790150850754 C C - 80078 80446 80255.818 80068 80472 - gene protein_coding_gene FALSE TRUE ATCG00770.1 chloroplast 30S ribosomal protein S8 Identical to Chloroplast 30S ribosomal protein S8 (rps8) [Arabidopsis Thaliana] (GB:P56801); similar to ribosomal protein S8 [Eucalyptus globulus subsp. globulus] (GB:YP_636334.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) 0.194197022662479 1.08717700628134 0.307170294541018 1 1.34932754082818 21.7949497561699 0.194197022662479 0.239551690053532
AT4G26650_at 5.72418927166631 5.82546554395985 4.98340769498843 5.33553156779963 5.13747740216455 5.76982999567898 6.08875370222474 6.0259398232614 5.53034532527871 5.20489899587463 6.289578492361 6.27912911191169 5.87087422015852 6.23623982008064 5.98905024333661 5.87050592645215 5.87502911376748 5.55536892151038 4.70137992761556 0.222864270890223 0.213290431458774 0.22957014756885 0.225968860329524 0.212793483459832 0.222358266974545 0.221066290966083 0.209998916922641 0.227199079132907 0.232761346793459 0.212248262282677 0.210955657787887 0.212909014953078 0.225470751554473 0.223031908638718 0.213426852012626 0.220703288481846 0.212660656324605 0.212135968613445 4 4 + 13446912 13447420 13447194 13444856 13448218 + gene protein_coding_gene FALSE TRUE AT4G26650.1|AT4G26650.2 RNA recognition motif (RRM)-containing protein|RNA binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G55550.1); similar to Os07g0584500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060120.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.120327572410417 1.08707010423098 0.307214894223874 1 1.34922153052925 11.1819560739448 0.120327572410417 0.126940460812476
AT3G19190_at 6.91739947055344 6.94758931077109 6.98192510010316 6.73603911757008 6.71131834506638 6.55826575385323 5.60305644171574 5.2660508704607 6.45885290144389 5.86351542741972 5.7452463948881 5.52960569934718 5.65282943090401 6.02223130230021 5.55550461197794 6.24954383909161 5.62868987247813 6.00979159113597 6.20449017829801 0.216958635298903 0.216076000632178 0.221997078664506 0.218779567757222 0.221963562594414 0.224499513210849 0.222705836884896 0.231323225545974 0.216576420090359 0.212052645553954 0.214148030002153 0.211776142575504 0.218665275196829 0.219148114808887 0.218330582059037 0.211776142575504 0.223818808412078 0.215798103960298 0.216336810849918 3 3 + 6647067 6648177 6647821.455 6639717 6648242 + gene protein_coding_gene FALSE TRUE AT3G19190.1 similar to unnamed protein product; gene_id:MVI11.11 unknown protein-related [Medicago truncatula] (GB:ABE80517.1); similar to Os06g0267600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057350.1); contains domain FAMILY NOT NAMED (PTHR13190); contains domain RecG, N-terminal domain (SSF69008); contains domain gb def: Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MVI11 (PTHR13190:SF3) 0.0934619480755738 1.08592658123925 0.30769229174933 1 1.34808802667521 12.4526054738380 0.0934619480755738 0.0770762225264426
AT4G34460_at 8.48255639248152 8.86831563522942 8.80382082571214 8.94069201416396 9.21731707805839 8.913457617619 8.66769106992009 8.668531805609 9.13934325640506 8.7753272362967 8.9634887295023 8.67990119218877 8.83510416054968 9.04006398850036 8.5804264542233 8.9506740661073 8.61149691931135 8.87033072136611 8.8334652777519 0.0792908500595954 0.0758659306163055 0.0792384178861927 0.0818341859832694 0.0769328562844198 0.079810581575837 0.0778100754865745 0.0779559858158553 0.0881082379253669 0.0773518193882651 0.079717125928175 0.0756850056050821 0.0789289340152368 0.0802693296539821 0.0753578309342311 0.0767860191488353 0.085274195614549 0.0797086091131542 0.0769564635055021 4 4 - 16477736 16478380 16477919.364 16477110 16479510 - gene protein_coding_gene FALSE TRUE AT4G34460.1|AT4G34460.2|AT4G34460.3|AT4G34460.4 AGB1 (GTP BINDING PROTEIN BETA 1); nucleotide binding|AGB1 (GTP BINDING PROTEIN BETA 1) Encodes a putative heterotrimeric G-protein beta subunit involved in organ shape. Mutants carrying null alleles express similar fruit phenotypes, as seen in er plants, but differ from er in that the stem is only slightly shorter than that in the wild type, the pedicel is slightly longer than that in the wild type, and the leaves are rounder than those in er mutants. Gene is expressed in all tissues examined, with highest expression level found in siliques. It is involved in resistance to Plectosphaerella cucumerina. Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to G protein beta subunit 2 [Solanum tuberosum] (GB:AAL07488.1); similar to Guanine nucleotide-binding protein subunit beta (GB:P93563); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632)|Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632)|Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G25150.1); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632)|Identical to Guanine nucleotide-binding protein subunit beta (transducin) (AGB1) (GB1) [Arabidopsis Thaliana] (GB:P49177); similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G67320.1); similar to Guanine nucleotide-binding protein subunit beta (GB:P93563); similar to Guanine nucleotide-binding protein subunit beta 2 (GB:P93398); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain G-protein, beta subunit; (InterPro:IPR001632) 0.098719340114557 1.08458827331558 0.308251747284783 1 1.34676256062799 17.6865383227425 0.098719340114557 0.0882197294118446
AT4G17870_at 9.0764797962464 9.48469626227586 9.35450272921272 9.70290296796408 10.0552681629021 9.80420953734596 9.90693550153644 10.0389079993565 9.86129269489865 9.71553090043778 9.75086490545283 9.18116172304124 9.41083184410898 9.72682296137893 8.8916063931542 9.90876704684369 9.36641482599812 9.43867403027369 9.75380217765996 0.129312624910642 0.125112426158689 0.121009424543278 0.123713868768346 0.123206025740300 0.135732903202832 0.126078276310055 0.126414405600959 0.14214026939812 0.123879587736995 0.124229188388233 0.131339062505593 0.12866034761838 0.125446661685706 0.124875002679274 0.124479056565388 0.134377792296034 0.128759820820146 0.126155067848131 4 4 + 9928865 9929329 9929073.545 9928691 9929531 + gene protein_coding_gene FALSE TRUE AT4G17870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G46790.1); similar to Streptomyces cyclase/dehydrase family protein [Brassica oleracea] (GB:ABD65175.1); contains InterPro domain Streptomyces cyclase/dehydrase; (InterPro:IPR005031) -0.107508165940795 -1.08414687342919 0.308436441471344 1 1.34632566042506 19.2961219815785 -0.107508165940795 0.105047257547223
AT3G60910_at 7.1668003523164 7.2763170371283 7.9939179678427 8.1176470713172 8.17481079747815 7.78679058168805 8.56118548000377 7.97833348525612 8.01256447717859 8.15385305926668 7.59134417329705 7.47285403967364 8.03113173387623 7.68573996333277 6.93926005622902 8.46337332383234 7.69234375176079 7.38796860510467 8.33657752328244 0.218626800607645 0.217041421177660 0.217248459100877 0.217815559392051 0.223225173755654 0.244619722099488 0.22309887596088 0.217041421177660 0.266905615487229 0.229275769320962 0.225111641268156 0.224170139756653 0.222925169552065 0.226503965781505 0.228283413292739 0.220289888575485 0.232112077874098 0.233137737261576 0.230275436572889 3 3 + 22513089 22514120 22513777.6 22512673 22514347 + gene protein_coding_gene FALSE TRUE AT3G60910.1 catalytic similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G17365.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD09975.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.118515274057774 -1.08369565421133 0.308625334046672 1 1.34587917652315 15.7948088345276 -0.118515274057774 0.124500645348812
AT1G56610_at 6.6749984860984 6.89886728607844 6.6831001042185 7.03518407855319 7.73146662122944 7.01111280575459 6.42612615905089 6.76244249545278 6.30008875792967 5.97880219785567 6.15539483769657 5.82939880567203 6.32692199558136 6.30609344304827 5.35424300936831 6.8724371578299 6.10452603498855 5.71370170296198 6.41963912936249 0.238883486919773 0.227982090701428 0.227982090701428 0.227982090701428 0.236413065532531 0.237531457131642 0.231118548125061 0.233404151887663 0.242541676651834 0.230530512046718 0.229395183332556 0.236233166724270 0.230726514059156 0.230943354669060 0.245467946595268 0.231568361502412 0.250197444573779 0.233889268135581 0.236719354068433 1 0|1 /|+ 21217098 21217585 21217358.111 21215620 21218227 + gene protein_coding_gene FALSE TRUE AT1G56610.1|AT1G56610.2 syntaxin-related family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT4G14096.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE80758.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE85215.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.137301778723117 1.08293078021689 0.30894573820349 1 1.34512264263709 13.0607537471092 0.137301778723117 0.155373664307407
AT2G35320_at 6.44059227646282 6.95233700732964 6.25342161875238 6.14350256078536 6.83267883381813 6.32721625244095 5.81534166120371 6.23677336375064 5.60220093866372 6.28302449455537 5.82022830487438 6.13044633945537 5.76029865847885 5.91423384402075 5.97409876681259 6.15493127433106 5.2281127716276 5.73388805443356 6.50356546066489 0.245627735490702 0.243874646730418 0.240944369100930 0.253732418002546 0.238845837218787 0.259177238645422 0.238845837218787 0.245889799536976 0.27334837915402 0.243111846745707 0.245919524971497 0.243372617557045 0.24950727344559 0.258124916579138 0.249836390140770 0.238845837218787 0.254149094972779 0.253863259214478 0.238845837218787 2 2 - 14874188 14875021 14874525.636 14873911 14875939 - gene protein_coding_gene FALSE TRUE AT2G35320.1 ATEYA (ARABIDOPSIS THALIANA EYES ABSENT HOMOLOG); protein tyrosine phosphatase, metal-dependent homologue of the animal Eys Absent genes. encodes a tyrosine-specific phosphatase. the protein sequence lacks the cys-containing signature of the classical tyrosine phosphatases. belongs to the aspartate-based phosphatases. The enzyme activity is strictly metal-dependent. similar to OSEYA1 [Oryza sativa] (GB:BAA85161.1); similar to Os06g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056580.1); contains InterPro domain EYA; (InterPro:IPR006545) -0.131061736805607 -1.08235973421811 0.309185118184197 1 1.34455808021886 12.3597963050091 -0.131061736805607 0.145516435341451
AT2G32910_at 8.26797376294722 8.40528181053062 8.08493907501502 8.41227706080922 8.39244041552137 8.36809353423636 8.25209320345359 8.32841981415153 8.0558511124834 7.93301128785184 7.53047946194488 7.69585433698434 7.74399245622501 7.79186053338014 7.71352860550581 8.14352021451794 7.97885151704634 7.90477722148896 7.9749242858949 0.169300332512488 0.162363937066724 0.168740511679946 0.160994521366279 0.172903208162757 0.170186608476526 0.164363678541106 0.166255171044681 0.163040652690111 0.164442446833491 0.166768785729232 0.16566125987801 0.164330414522441 0.165846288412544 0.168373512387994 0.158619135100580 0.169391810556579 0.164665365989768 0.158748741896648 2 2 + 13968614 13969016 13968821.636 13966127 13969195 + gene protein_coding_gene FALSE TRUE AT2G32910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G61910.3); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94008.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG22502.1); similar to Os06g0227200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057206.1); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994) -0.087037739199306 -1.08232943895606 0.309197821885113 1 1.34452813506367 16.2143333039815 -0.087037739199306 0.0629743470123158
AT4G14010_at 6.82449360658749 7.00762899043875 7.07228937665327 7.31279069916774 6.44224619330824 7.4243483630269 7.06112587098173 8.0339955090171 8.33558890037869 7.98557471562685 9.16037788960441 8.94182473566286 8.79177536117705 9.10071875147189 8.76333388182935 8.67229656504068 8.26827889904092 9.20520110318694 8.57896601957416 0.183186715979689 0.169759619850784 0.180171824394193 0.168699097252451 0.176889776763134 0.194296442499272 0.178468279248557 0.169801638483226 0.173673763094489 0.169147801530149 0.169548772206383 0.167588255777397 0.166246745777026 0.170430087461192 0.176593787387096 0.174785469413322 0.184559849298597 0.166246745777026 0.166950481284234 4 4 - 8093011 8093325 8093149.636 8092828 8093377 - gene protein_coding_gene FALSE TRUE AT4G14010.1 RALFL32 (RALF-LIKE 32) Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide. similar to RALFL33 (RALF-LIKE 33) [Arabidopsis thaliana] (TAIR:AT4G15800.1); similar to Rapid ALkalinization Factor [Medicago truncatula] (GB:ABE90453.1); contains InterPro domain Rapid ALkalinization Factor; (InterPro:IPR008801) 0.197020175149816 1.08232305613981 0.309200498441241 1 1.34452182608926 15.7288743812660 0.197020175149816 0.244881794306889
AT4G18030_at 8.76733877596026 9.21929301687157 8.3491076530409 8.4513799904588 9.24087806769818 8.87431659504724 9.73863631181931 9.6332519098821 9.50924453693194 9.54594644521762 10.4187922973867 10.1772443638310 9.66561698385947 9.8938784542734 10.1367678851999 9.55033111189864 9.21212789818797 9.84939694206636 9.3407730830565 0.129377441491464 0.127007834507946 0.136792730119127 0.135350017951073 0.130446705873693 0.130975491868397 0.126921512241504 0.130257969723440 0.130171050005905 0.128816222728809 0.126921512241504 0.126921512241504 0.130644578058450 0.133184117222628 0.128934080246473 0.126921512241504 0.134046825301751 0.129944230578068 0.131311598662953 4 4 - 10012882 10013729 10013352.727 10012373 10015827 - gene protein_coding_gene FALSE TRUE AT4G18030.1 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G26850.2); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Putative methyltransferase [Medicago truncatula] (GB:ABE90775.1); similar to unknown [Malus x domestica] (GB:AAF27920.1); similar to Methyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB48009.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.106505645026393 -1.08054103946487 0.309948475810789 1 1.34276149985573 18.6984457136756 -0.106505645026393 0.103860981069234
AT2G19950_at 6.52913265805598 6.08811711156271 6.13314777212953 5.68214224228736 6.77043403840653 5.85454160788658 6.16747788771372 6.15702086969844 6.63058439063219 5.79346463748011 6.0634331931807 5.98479994122519 5.55425224564811 5.78550854573273 5.77139454766549 6.06569408805751 5.96345997613868 5.92824595392095 5.83493927046283 0.231380484552605 0.229959911587631 0.229959911587631 0.232099335729702 0.246174026183325 0.237548791446315 0.242466094403219 0.234617835877767 0.242709587837795 0.237074391964147 0.239878845373964 0.237741920245737 0.236070627362662 0.237577982963346 0.234192861021355 0.242044551817044 0.231613518201991 0.229959911587631 0.239069886716189 2 2|0 -|/ 8623452 8624810 8623913.2 8623174 8628486 - gene protein_coding_gene FALSE TRUE AT2G19950.1 Identical to Golgin-84 [Arabidopsis Thaliana] (GB:Q8S8N9;GB:Q6NMI2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18190.1); similar to Gol (GB:Q6GNT7); similar to Os01g0744400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044225.1); contains domain SUBFAMILY NOT NAMED (PTHR13815:SF1); contains domain FAMILY NOT NAMED (PTHR13815) -0.161050793996209 -1.08044664219539 0.309988137279799 1 1.34266831132957 12.1607157706199 -0.161050793996209 0.192462073019870
AT4G21450_at 9.96695307716982 10.2595432875691 10.1533353519101 10.3382271335313 10.5002680957293 10.2029835039360 9.6076087428126 9.7499373832742 9.63705006215743 9.65436077253184 9.55728735169083 9.6578405473969 9.66557839054942 9.51521298987216 9.09222127265737 9.6735489647327 9.32098346476935 9.41941328133054 9.80644403793944 0.120762896804260 0.119647326067264 0.123761040554557 0.118739235645545 0.126808164576892 0.121444094941922 0.123127142705039 0.121405116446407 0.1295404621288 0.122410219148030 0.123601771429044 0.1174275893512 0.122726466760082 0.124564851680411 0.124599058131026 0.1174275893512 0.126127403226667 0.123162130154248 0.118503386182918 4 0|4 /|+ 11427156 11428112 11427584 11426034 11428356 + gene protein_coding_gene FALSE TRUE AT4G21450.1|AT4G21450.2 vesicle-associated membrane family protein / VAMP family protein similar to vesicle-associated membrane family protein / VAMP family protein [Arabidopsis thaliana] (TAIR:AT4G05060.1); similar to Major sperm protein [Medicago truncatula] (GB:ABD32337.1); contains InterPro domain PapD-like; (InterPro:IPR008962); contains InterPro domain Major sperm protein; (InterPro:IPR000535) 0.0955843619511139 1.07977865387250 0.310268909385047 1 1.34200904841906 19.6908799422005 0.0955843619511139 0.0827102762829857
AT1G16560_at 6.81672657402219 7.02876848432415 6.32035398729952 5.9914062441273 6.39332138064996 6.01386860928065 6.31509422945944 6.114436666856 5.86254853234119 5.03877865914963 6.11143001336712 6.30846790187013 6.0903308625437 6.02588040512465 6.0051277949699 5.39903073012818 5.7106348511134 5.62695774047511 5.03303377524737 0.219202077437620 0.207475446681549 0.214186669495004 0.212870688815195 0.210038189478438 0.219286827613728 0.209575232389012 0.207475446681549 0.222814684692748 0.21893911030309 0.207914498566111 0.217229357965279 0.207475446681549 0.222735811671440 0.221028152987559 0.207475446681549 0.223597508795530 0.208005763430195 0.210693146984759 1 1|0 +|/ 5669615 5670238 5669928.5 5668377 5670701 + gene protein_coding_gene FALSE TRUE AT1G16560.1|AT1G16560.2|AT1G16560.3|AT1G16560.4 Per1-like family protein similar to Per1-like protein-related [Arabidopsis thaliana] (TAIR:AT5G62130.1); similar to Per1-like family protein [Solanum tuberosum] (GB:ABB72805.1); contains InterPro domain Per1-like; (InterPro:IPR007217) 0.104629974271771 1.07971782140042 0.310294488675359 1 1.34194902552472 11.9848401185166 0.104629974271771 0.100523200379894
AT3G14660_at 10.1192151015653 10.0176075960036 10.2269352978902 10.1584023115266 10.3867954216369 10.1321290061704 10.0203198900347 9.81815178029274 9.1723188012983 9.86982655957365 9.54474096047989 9.43031163933395 9.68201128942825 9.50463412225062 9.34929267515818 9.85451665214876 9.77910969910042 9.661800938511 9.94279489477318 0.0919991914241673 0.087594628210797 0.0902272924319676 0.0861028868441128 0.086828142174991 0.0909655479920766 0.088491629939236 0.0871342327127885 0.100760285554542 0.0861028868441128 0.0937515427303755 0.0897504453169169 0.0908300288555136 0.096005525746156 0.0947302198671845 0.088278872634364 0.0956707109273086 0.0928345395199035 0.0865623023665412 3 3 + 4926259 4926807 4926566.364 4924784 4927441 + gene protein_coding_gene FALSE TRUE AT3G14660.1 CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13); oxygen binding putative cytochrome P450 similar to CYP72A15 (cytochrome P450, family 72, subfamily A, polypeptide 15), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14690.1); similar to CYP72A14 (cytochrome P450, family 72, subfamily A, polypeptide 14), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14680.1); similar to CYP72A11 (cytochrome P450, family 72, subfamily A, polypeptide 11), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14650.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0856987062508183 1.07966799117222 0.310315442890455 1 1.34189986031529 19.7411690501066 0.0856987062508183 0.0601343874006025
AT2G43770_at 7.40409114665893 7.7078594357954 7.75733778369002 7.67184262917678 8.04847237835434 7.97930329790919 7.79988094117321 8.03056946132334 6.65133593759634 6.36559467070962 5.95400626251833 6.18085573616292 6.78161306853666 6.4332014682617 6.28394815189626 6.79833868673104 6.48883459340292 6.19686572283433 7.07303417120349 0.215246503480508 0.215246503480508 0.227100164322436 0.219111635458655 0.216351663475355 0.228400022433139 0.215246503480508 0.219189386531852 0.231598324905473 0.221833063158343 0.224250654610251 0.217983373671086 0.220211992918987 0.215246503480508 0.225862045833599 0.218116925983517 0.226795573064677 0.215930701520844 0.228097492226254 2 2 - 18141385 18141909 18141594.545 18141138 18143078 - gene protein_coding_gene FALSE TRUE AT2G43770.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G49660.1); similar to WD40-like [Medicago truncatula] (GB:ABE81644.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.0891540945826357 -1.07910741861879 0.310551246782747 1 1.34134688457346 14.3431010781582 -0.0891540945826357 0.0686977211156834
AT4G17060_at 6.14644650605793 6.55021297684225 6.0193106926648 6.29411335741387 6.42161893277357 6.64741566170689 5.57545249823992 6.37843111061066 6.09628728602045 5.77037448969694 5.6899423404821 6.0053914760654 5.78230064487406 6.20358786848638 6.33199590090658 6.21052216321791 5.54763669589381 6.11794363121176 5.77455076443494 0.208136724147422 0.206169073339459 0.203229097510778 0.196715483817594 0.198388696023069 0.196771915829711 0.203837710470483 0.198423172907649 0.213307894353335 0.198544099168177 0.199941563695427 0.196715483817594 0.201923706544173 0.197610543630968 0.205771112024658 0.207606775002567 0.215931406776735 0.205066577117574 0.196715483817594 4 4 - 9593793 9594296 9594099.364 9593548 9595268 - gene protein_coding_gene FALSE TRUE AT4G17060.1 similar to transcription factor [Arabidopsis thaliana] (TAIR:AT2G44730.1); contains domain Origin of replication-binding domain, RBD-like (SSF55464) 0.14436989914678 1.07896679867542 0.310610420322471 1 1.34120820360834 12.1874098521352 0.14436989914678 0.167273485251273
AT4G02410_at 8.98620928758023 9.2716105516659 9.37542863380224 9.49226758194009 9.39089873738307 9.05921739000938 8.95574680891656 9.11132110532792 8.96878303271533 8.68177554155739 8.40436718024667 8.51125476025304 8.40038925631659 8.6038482041589 7.30590182300323 8.47830992386069 8.53463900403283 8.3972635043591 8.65544212291765 0.149041706226062 0.149503625587201 0.147810558823210 0.156525127437315 0.148558267435867 0.150323589075055 0.147341419627408 0.147062281753471 0.15770860993944 0.144694599697851 0.152729133450756 0.148307794618942 0.146799506731663 0.152082877321430 0.156388892388974 0.144360497734508 0.16551555263904 0.159268127617547 0.157440232781513 4 4 - 1060091 1060586 1060325 1059889 1062153 - gene protein_coding_gene FALSE TRUE AT4G02410.1 lectin protein kinase family protein similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G53810.1); similar to RLK (RECEPTOR LECTIN KINASE), kinase [Arabidopsis thaliana] (TAIR:AT2G37710.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G02420.1); similar to receptor kinase Lecrk [Gossypium hirsutum] (GB:AAP47579.1); similar to lectin-like receptor kinase 7;1 [Medicago truncatula] (GB:AAR11298.1); similar to lectin-like receptor kinase 7;2 [Medicago truncatula] (GB:AAR11299.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.095469522311767 -1.07760743810940 0.311182900747169 1 1.33986827626714 17.7544193151243 -0.095469522311767 0.082871522069063
AT3G56750_at 5.30341822765395 5.16760635994032 4.55725397208418 4.74918291899547 5.77211801847237 5.067224837715 5.50338109624213 5.07677885195362 4.45498300383605 4.82582167343325 4.64161914937638 4.71346015441628 4.78004916897768 4.43365771067154 4.86722261468842 4.74498266305088 4.90870274759771 4.40987141013372 4.89518278038074 0.210056240700621 0.210859104852984 0.213449877832124 0.210943783712422 0.212085402315177 0.219343403285471 0.210675481997002 0.208776239339076 0.216263380127456 0.203262728164265 0.203253845499378 0.208288838711109 0.203253845499378 0.207655541468727 0.213928431809455 0.203253845499378 0.213046323624057 0.203715050152662 0.214264812739454 3 0|3 /|- 21029380 21030126 21029791.778 21029068 21031410 - gene protein_coding_gene FALSE TRUE AT3G56750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41150.2); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF96132.1) -0.132117323658343 -1.07698337500694 0.311445994672883 1 1.33925355335943 9.85600796283917 -0.132117323658343 0.148277196200496
AT2G32560_at 4.70177160968282 4.85090623639976 5.20484548912918 5.40036266908943 5.12164824212279 4.973642647233 6.02760356624811 5.97664400492326 5.93647946176787 5.5213899393526 6.38163619106654 6.35155688952591 5.90946754362276 6.37634658018512 6.32602803158207 6.76751948379086 5.7634562672428 6.12142049101663 6.15716094144137 0.140592466656566 0.135043104049072 0.139789615575388 0.137708710518059 0.136475045321686 0.149846205537955 0.142202560226683 0.144401665043866 0.141467731390335 0.135719690879046 0.140757421311821 0.139204897791994 0.139470500117208 0.145350536290809 0.141060417095052 0.142487446717694 0.139488123240332 0.136718908202115 0.14060359808245 2 2 + 13832224 13833765 13833087.909 13831871 13834063 + gene protein_coding_gene FALSE TRUE AT2G32560.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G26850.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABD33039.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0819477807401237 1.07694294081180 0.311463047010941 1 1.33921373342589 11.3428559159076 0.0819477807401237 0.0504449558687685
AT3G52340_at 7.52725638902985 7.94473494014248 7.48183530040999 7.42869084530538 8.25144831758104 7.58415760910612 9.13697660548597 8.83861211357268 8.41993917584638 8.23035835419781 8.52983884529954 8.7043596848729 8.68842102149 8.64662072239535 8.36600361080083 9.29794314493419 8.63012605824628 8.42938829888042 8.0923096451253 0.171962571752163 0.170903605745411 0.183276508265882 0.173131288347813 0.163802924113273 0.181483731845960 0.165066280545724 0.170610588862614 0.168604371095747 0.161740492278994 0.16783804963322 0.166748170428041 0.174907010974566 0.163105422249820 0.173734917877067 0.167115479579655 0.181340144809713 0.173806333772244 0.162716241620494 3 3|0 +|/ 19419321 19419964 19419582.3 19418001 19420435 + gene protein_coding_gene FALSE TRUE AT3G52340.1|AT3G52340.2|AT3G52340.3 SPP2 (SPP2); sucrose-phosphatase sucrose-phosphatase (SPP2) similar to sucrose-phosphatase 1 (SPP1) [Arabidopsis thaliana] (TAIR:AT2G35840.2); similar to sucrose phosphate phosphatase [Malus x domestica] (GB:AAS79792.1); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Sucrose phosphatase, plant and cyanobacteria; (InterPro:IPR012847); contains InterPro domain Sucrose-phosphate phosphatase; (InterPro:IPR006378); contains InterPro domain Sucrose-6-phosphate phosphohydrolase C-terminal; (InterPro:IPR013679); contains InterPro domain Sucrose-6F-phosphate phosphohydrolase, plant and cyanobacteria; (InterPro:IPR006380) -0.130655022824334 -1.07672593769032 0.311554576345961 1 1.33900004584811 16.4787757142899 -0.130655022824334 0.145963267122904
AT1G04000_at 4.44720625532798 5.05263586533978 3.85803690833076 4.10038307454453 4.26229463012999 5.12414244752062 4.43663519586677 5.31253819708137 4.84928092268695 4.65744458772819 5.32201453697027 5.1063985291728 5.28175465616949 5.18294398174541 4.69476899874074 5.05186722077506 4.49147297757235 4.19522787081882 4.96953269896555 0.187837432983834 0.183393295182299 0.186059985535715 0.183532642056662 0.182966602930546 0.191990507489999 0.184891396124775 0.182430584718985 0.190471639569826 0.185056842637558 0.182430584718985 0.182430584718985 0.184777757597493 0.188740130439041 0.186141403604193 0.182430584718985 0.185620491925678 0.185991759072209 0.185073037082721 1 1 - 1028460 1028820 1028639.455 1028105 1029118 - gene protein_coding_gene FALSE TRUE AT1G04000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44060.1); similar to Os02g0621600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047462.1); similar to hypothetical protein LOC_Os10g33360 [Oryza sativa (japonica cultivar-group)] (GB:AAP54238.2); similar to hypothetical protein [Oryza sativa] (GB:AAG16859.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.192826459951890 -1.07492432879062 0.312315285841214 1 1.33722719513202 9.44484682157898 -0.192826459951890 0.240742885925989
AT3G59140_at 6.0122407949897 6.0154837384135 6.3915057600935 6.22626184217571 6.08172325222642 5.83561362744946 7.0860350379848 6.4392568220123 5.52487723526148 5.93698638671416 5.44673499490694 5.45820654147557 5.4503969304872 5.58712851808846 5.4029213669754 5.62908710369435 6.02102542825607 5.47112348521614 5.14905174153185 0.202926043700259 0.215578250302635 0.226414469534813 0.214262804798161 0.214358990018683 0.222992058248776 0.21880610064749 0.212566669203714 0.208032626504130 0.206753577875724 0.206686217612742 0.209600927958550 0.2035363822426 0.207703835642445 0.212575784296390 0.204652608973661 0.214908923300001 0.216960454812440 0.208085937580431 3 3|0 -|/ 21874496 21875320 21874895 21874397 21879678 - gene protein_coding_gene FALSE TRUE AT3G59140.1 ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) member of MRP subfamily similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP8 (Arabidopsis thaliana multidrug resistance-associated protein 8) [Arabidopsis thaliana] (TAIR:AT3G13090.1); similar to ATMRP6 (Arabidopsis thaliana multidrug resistance-associated protein 6) [Arabidopsis thaliana] (TAIR:AT3G21250.1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE87094.1); similar to multidrug-resistance associated protein 3 [Zea mays] (GB:AAT37905.1); similar to ABC transporter, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX92722.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.116560859781057 -1.07312499636881 0.313076481965996 1 1.33545878141796 11.8086650264048 -0.116560859781057 0.123125453544913
AT2G39340_at 8.2860796097405 8.3588325015597 8.49709001902255 8.33685643892298 9.02219440913681 8.26441799165549 8.5777272835656 7.9023628670063 7.57954570326277 8.27856636514275 7.97857419787568 8.19973465072438 8.57072536220556 8.03944029762677 7.66749810964177 8.79493009464337 8.16429671280223 7.74005695855047 8.41780262504885 0.168223427716352 0.166056683790672 0.168780940169184 0.174216497085401 0.173746048040483 0.178297282999393 0.168839584205317 0.175261302130597 0.173765792624935 0.17823298258013 0.172043894862399 0.170349944387984 0.166056683790672 0.171535095414743 0.173959665462709 0.166056683790672 0.177526193380802 0.175821295545017 0.171639139031692 2 2|0 +|/ 16435822 16436781 16436236.2 16430719 16437186 + gene protein_coding_gene FALSE TRUE AT2G39340.1 SAC3/GANP family protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G33680.1); similar to putative GANP protein [Oryza sativa (japonica cultivar-group)] (GB:AAT39189.1); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) 0.150662316370209 1.07301971192778 0.313121066707072 1 1.33535537418398 16.5238844463230 0.150662316370209 0.17828074142716
AT1G12360_at 9.37249759483324 9.36508996595455 9.27446955089466 9.26764754880011 9.63107192400494 8.98703939637084 8.77830569649247 8.39580552713992 8.82179058248429 8.58061573231103 8.7224793192994 8.65009442053843 8.5269013019517 8.8101902256783 8.23635859999345 8.74717368883372 8.50871646619024 8.61530865839029 8.61840237537311 0.144345450035198 0.138463794607206 0.146189280852148 0.141661312272364 0.137057465334003 0.136896610427656 0.142601938727389 0.138763664642663 0.142172347519215 0.135402926679247 0.144984602588477 0.135503968856122 0.144410004515803 0.141607832196954 0.148282955864966 0.138342848300698 0.142854845556881 0.150214235043831 0.145118678163034 1 1 + 4204937 4205928 4205443.636 4200874 4206402 + gene protein_coding_gene FALSE TRUE AT1G12360.1 KEU (KEULE); protein transporter encodes a Sec1 protein and expressed throughout the plant. physically interacts with Syntaxin1 and is required for cytokinesis. Identical to SNARE-interacting protein KEULE (KEU) [Arabidopsis Thaliana] (GB:Q9C5X3;GB:Q9LNB0); similar to SEC1B, protein transporter [Arabidopsis thaliana] (TAIR:AT4G12120.1); similar to SEC1A, protein transporter [Arabidopsis thaliana] (TAIR:AT1G02010.1); similar to Probable protein transport Sec1a (GB:Q7XWP3); similar to Sec1-like protein [Medicago truncatula] (GB:ABE87444.1); similar to Sec1-like protein [Medicago truncatula] (GB:ABE92383.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) 0.120341173649616 1.07285077510058 0.313192616646056 1 1.33518946520906 17.7718687664775 0.120341173649616 0.129639277401621
AT1G77220_at 5.78403974924986 6.11406419664535 5.88783669119651 5.73280405007924 6.31483762885866 5.9875715748704 5.62792619155272 5.33191421252552 4.92675800122722 4.90475117217007 4.8040208332578 5.11700726816835 4.82790853224842 5.23194559701309 4.96109006044656 4.65116402038519 5.12864575284485 4.89673559606603 5.2051434933326 0.187734396831908 0.181264097914396 0.182625364300131 0.188618265725538 0.184193556653510 0.183144400708350 0.186301683134007 0.180461249840718 0.193065177199839 0.1765993944572 0.181881071426611 0.181207416136576 0.176943125217452 0.185300521701482 0.185739317275888 0.1765993944572 0.179191366797359 0.194554255126589 0.183802440976384 1 0|1 /|+ 29019813 29020376 29020082.9 29017611 29020697 + gene protein_coding_gene FALSE TRUE AT1G77220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G38360.2); similar to MAP kinase activating protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61807.1); similar to Os05g0516900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056049.1); contains InterPro domain Protein of unknown function DUF300; (InterPro:IPR005178) 0.103186775367499 1.07278831585135 0.313219073289838 1 1.33512813032457 10.8298904184375 0.103186775367499 0.0990618796165927
AT1G17120_at 5.72522547707549 6.68838491548202 5.97293580131973 6.0342772847268 6.74916660959418 6.39224103343616 6.17187504710234 6.37753213583972 7.13377180376755 6.11613461442644 6.96384692551046 7.04039934022332 7.0965783326076 7.0661872906714 6.75727684118294 6.93466731494123 6.31668236968637 6.8625644820025 6.61254984803606 0.206962339027021 0.189672554558922 0.210055530142814 0.203046668359328 0.196216401236925 0.208922627812064 0.200515095127967 0.194459329176073 0.210077523174458 0.198779007419306 0.201219193678205 0.193456301390132 0.191013382807332 0.208047423212947 0.200740678010548 0.197938165326337 0.217731751979846 0.196133544212802 0.194313614436045 1 1 + 5853132 5853645 5853384.182 5851946 5853948 + gene protein_coding_gene FALSE TRUE AT1G17120.1 CAT8 (CATIONIC AMINO ACID TRANSPORTER 8); cationic amino acid transporter Arabidopsis thaliana amino acid permease family protein (At1g17120) similar to CAT5 (CATIONIC AMINO ACID TRANSPORTER 5), cationic amino acid transporter [Arabidopsis thaliana] (TAIR:AT2G34960.1); similar to Os01g0209800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042365.1); similar to Os06g0539400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057802.1); similar to Amino acid permease family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99390.1); contains InterPro domain Amino acid permease-associated region; (InterPro:IPR004841); contains InterPro domain Amino acid/polyamine transporter I; (InterPro:IPR002293) 0.152678697543771 1.07204910009010 0.313532324669408 1 1.33440242292738 13.0142518468287 0.152678697543771 0.181594430239368
AT2G46030_at 8.36146910056148 8.25117011240013 8.90318075783513 8.72521924484229 9.21054578975134 9.00377465176222 9.14333179701599 9.12607623592559 9.29105934080455 9.14664592495388 8.9861858919678 8.95064292454934 9.10705348749019 9.18332817929289 8.7885598991322 9.30465346067187 8.8537991159286 9.21709070811984 8.9391429120962 0.157426700167373 0.153854651303089 0.170724800027317 0.171235909141891 0.156039539144160 0.166919304038876 0.157716078536292 0.153188566329787 0.169481124620825 0.162156030951131 0.153368666154214 0.155533458752786 0.151704976389437 0.15724345092956 0.161620528883594 0.163074449473757 0.162959158506223 0.164902059195936 0.157418014202162 2 2|0 -|/ 18939535 18940466 18939870.889 18939092 18940580 - gene protein_coding_gene FALSE TRUE AT2G46030.1 UBC6 (UBIQUITIN-CONJUGATING ENZYME 6); ubiquitin-protein ligase Ubiquitin conjugating enzyme E2 Identical to Ubiquitin-conjugating enzyme E2-21 kDa 3 (EC 6.3.2.19) (Ubiquitin- protein ligase 6) (Ubiquitin carrier protein 6) (UBC6) [Arabidopsis Thaliana] (GB:P42750;GB:O49739;GB:O82365); similar to UBC4 (UBIQUITIN CONJUGATING ENZYME 4), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G41340.1); similar to ubiquitin conjugating enzyme (GB:AAA32900.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.0817332243405784 1.07159548904114 0.313724668716534 1 1.33395728500140 17.9278610951013 0.0817332243405784 0.0510109921029271
AT3G21230_at 5.51519975233612 6.04684823485568 6.4878187454151 6.85462830836382 5.32672593222622 5.64984799891696 6.48570444651295 6.40796137278821 3.51382204885926 4.44286982366818 3.3368425447141 3.18197805623513 4.09351727407749 3.71146317246568 3.34999475195756 4.64818726233518 4.83675279140252 3.3574480006026 4.09140860909323 0.200748393366754 0.197241769819684 0.198149394898149 0.198700604258261 0.196717683759522 0.197026562000732 0.194476172862688 0.196896439420352 0.204048836095622 0.208028878509082 0.194839337128760 0.194559944883139 0.200795708451489 0.199210696561245 0.196222280831835 0.193257440845136 0.195773954682932 0.201543840669074 0.196160621010907 3 3|0 -|/ 7448480 7449035 7448768.4 7448046 7452006 - gene protein_coding_gene FALSE TRUE AT3G21230.1 4CL5 (4-COUMARATE:COA LIGASE 5); 4-coumarate-CoA ligase The gene encodes a 4-coumarate coenzyme A ligase being able to use sinapate as substrate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, 5-OH-ferulic acid, ferulic acid and sinapic acid. At4CL5 was unable to use cinnamic acid as substrate. Knockout of At4CL5 (4cl5) revealed no effect on syringyl lignin content indicating that the activity observed does probably not occur in vivo. Identical to 4-coumarate--CoA ligase 4 (EC 6.2.1.12) (4CL 4) (At4CL4) (4-coumaroyl- CoA synthase 4) (4-coumarate CoA ligase isoform 5) (4CL4) [Arabidopsis Thaliana] (GB:Q9LU36;GB:Q84P22;GB:Q8LPN8); similar to 4CL2 (4-coumarate:CoA ligase 2), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21240.1); similar to 4CL1 (4-COUMARATE:COA LIGASE 1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G51680.1); similar to 4-coumarate:CoA ligase [Betula platyphylla] (GB:AAV65114.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:coenzyme A ligase [Eucalyptus camaldulensis] (GB:AAZ79469.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.117841858771246 -1.07112453784374 0.31392446289431 1 1.33349527886465 10.0121200867256 -0.117841858771246 0.125706224044587
AT4G37130_at 4.43734678893058 4.89898060795821 4.85289522057875 4.95928649523382 5.12448229520399 4.9357636313542 5.19257856812325 4.99352368512898 5.12125416561803 5.45968734932998 5.01692018858486 5.09404493732536 4.78407696500205 5.21010709554111 4.68910903425693 5.27737905252084 4.46790364658268 4.68621222879653 4.99515306871021 0.189520778441610 0.185562558036889 0.200573462567462 0.187964544154555 0.185242704516169 0.185242704516169 0.191722752837377 0.192007049042303 0.192539912233239 0.188900377365870 0.189840687826221 0.190222459401037 0.198621610290433 0.188640730433589 0.192580037656323 0.186243196124465 0.193305666728230 0.200423460858806 0.194020288386520 4 4 + 17491120 17491897 17491531 17489461 17492004 + gene protein_coding_gene FALSE TRUE AT4G37130.1 hydroxyproline-rich glycoprotein family protein similar to structural constituent of nuclear pore [Arabidopsis thaliana] (TAIR:AT2G45000.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP50947.1); similar to Os09g0453500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063345.1); contains domain UNCHARACTERIZED (PTHR23245:SF2); contains domain UNCHARACTERIZED (PTHR23245) -0.100656443126170 -1.06983820487505 0.314470676731208 1 1.33223414697015 9.97198249729515 -0.100656443126170 0.0947326056936824
AT3G49080_at 4.71933370798507 5.087810613129 5.02287867251001 4.6984639195924 4.79804366834446 4.6237223361878 5.49018720858973 5.30485561418952 4.62013768178467 4.58364878124169 4.56592068671877 4.84697451062085 4.70920810637296 4.48137711569387 5.23497602349516 4.76358023388891 4.93422330228897 4.94065768148772 4.73758714384306 0.154499715935476 0.145156724766533 0.14318315331532 0.146455814649399 0.141556733572765 0.148780488973442 0.145892442867308 0.157346273504134 0.146740376546722 0.142017882957121 0.143564426580278 0.145650587682388 0.142330556359610 0.148624912295471 0.148291752027680 0.143173750150702 0.146809068026764 0.151683098912690 0.144257631886009 3 3|0 -|/ 18205487 18207502 18206709.5 18205139 18207712 - gene protein_coding_gene FALSE TRUE AT3G49080.1 ribosomal protein S9 family protein similar to RPS9 (RIBOSOMAL PROTEIN S9), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G74970.1); similar to putative 30S ribosomal protein S9 [Oryza sativa (japonica cultivar-group)] (GB:BAC81159.1); contains InterPro domain Ribosomal protein S9; (InterPro:IPR000754) -0.101139732433449 -1.06973666254292 0.314513826057945 1 1.33213464196125 9.69653158916302 -0.101139732433449 0.0956909183885184
AT4G39300_at 5.12148298480767 5.42077824083672 4.95955473204922 5.27450103665139 5.54492078227899 5.00130756645314 5.46942858982178 5.37092250150598 4.21736514756769 4.21552959657821 4.05944739644963 4.10980888847013 4.1499997997456 4.08614690425734 4.4953682334206 3.89881623652201 4.55175141115779 4.01199186061761 4.31850480906153 0.198255477843601 0.197885688565266 0.193140175360723 0.190931579040671 0.201697253107154 0.196559392973501 0.196915488141238 0.203654974822722 0.203272310194928 0.192268491967659 0.192969700215528 0.196828829925506 0.192020661634360 0.206363152683501 0.193950783829079 0.195751443713082 0.196323353455396 0.198994639420598 0.195713800083972 4 4|0 +|/ 18286829 18287188 18286952.625 18286739 18288332 + gene protein_coding_gene FALSE TRUE AT4G39300.1|AT4G39300.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13674.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82724.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G13674.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11630.2); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE82724.1) -0.115316113145283 -1.06959512622403 0.314573978102962 1 1.33199595711090 9.48080348383356 -0.115316113145283 0.121630175394967
AT1G15750_at 9.39631770096588 9.42554865759934 9.55854901317538 9.62472516790655 9.84421448567843 9.56015519758174 8.9916100407136 9.04407368122433 9.6435414777446 9.34431556852276 9.3091643254481 9.30462345456063 9.33619770039136 9.29804596801693 8.94919794191958 9.49254897370657 8.95905345777915 9.26451101353289 9.5368547866968 0.109512018430624 0.10380198121123 0.112491985038119 0.105736786143294 0.104163231667865 0.111421542109591 0.113810149617712 0.106323911136490 0.120208052979367 0.107748882679677 0.109641475087131 0.104060269434838 0.10380198121123 0.108964208841438 0.108148274552651 0.10380198121123 0.112575358832511 0.112360253358511 0.10380198121123 1 1 - 5415141 5415799 5415461.727 5414812 5420908 - gene protein_coding_gene FALSE TRUE AT1G15750.1|AT1G15750.2|AT1G15750.3|AT1G15750.4 TPL/WSIP1 (WUS-INTERACTING PROTEIN 1); protein binding|TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) Encodes a protein with several WD40 repeats at the C-terminus and predicted protein-protein interaction domains at the N-terminus. Together with the TOPLESS-RELATED PROTEINS (TPRs), it is thought to be involved in transcriptional repression of root-promoting genes in the top help of the embryo during the transition stage of embryogenesis. similar to TPR1 (TOPLESS-RELATED 1) [Arabidopsis thaliana] (TAIR:AT1G80490.2); similar to TPR2 (TOPLESS-RELATED 2) [Arabidopsis thaliana] (TAIR:AT3G16830.1); similar to TPR4/WSIP2 (TOPLESS-RELATED 4) [Arabidopsis thaliana] (TAIR:AT3G15880.2); similar to WD-40 repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC99788.1); similar to CTV.2 [Poncirus trifoliata] (GB:AAN62336.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain LisH; (InterPro:IPR013720); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.0817270113622066 1.06917374524045 0.314753115474464 1 1.33158314628215 18.8043518091427 0.0817270113622066 0.0515330652757645
AT2G14850_at 5.17886069836873 5.31119019545386 5.35499280382055 5.7025338275009 6.22294640638038 5.14835253181821 5.31354725726658 5.64858439478515 5.19368933795281 5.26054260142928 5.35639504530508 5.2556768189638 5.22430906346556 5.52660522077609 4.90163377206424 5.42025280665692 5.16304056524331 5.32928606437909 5.08823394979962 0.230062961418125 0.228762859636111 0.236422776945622 0.232612066295077 0.228762859636111 0.239558565248572 0.230140827670163 0.235985485611868 0.233400895046771 0.23146333670402 0.228762859636111 0.228762859636111 0.228762859636111 0.236393737575248 0.241929707642945 0.229661909277135 0.234362304459041 0.244006051849104 0.229388666083130 2 2 + 6393799 6394332 6394064.909 6392954 6394652 + gene protein_coding_gene FALSE TRUE AT2G14850.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33890.2); similar to hypothetical protein MA4_8L21.20 [Musa acuminata] (GB:ABF70007.1) 0.167744356228813 1.06904526477776 0.31480775087205 1 1.33145730295203 10.7116119557580 0.167744356228813 0.205148091730286
AT4G08290_at 7.4961571738227 8.04316946149776 8.78705605552223 9.0989073798733 8.81929459181347 8.10758715272501 9.88662917696268 9.78889571307425 7.81852336152224 8.33716554222696 8.15351186900639 7.41200213723133 8.20031705000771 7.94084929519643 6.27021734326275 7.59246728497184 8.57012433668326 7.76454953250542 7.60690953567449 0.195905783765923 0.185844539163735 0.189832164033026 0.192156819130171 0.190100442586467 0.204548194418334 0.197962762927057 0.190081778307815 0.209581127335593 0.188607868555870 0.191402715279608 0.197056816387794 0.192274968487008 0.194508557807333 0.200967740404868 0.188133450792576 0.194581570081062 0.201066185491913 0.191081308862012 4 4 + 5240009 5240813 5240357.182 5238903 5241028 + gene protein_coding_gene FALSE TRUE AT4G08290.1|AT4G08290.2 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT2G39510.1); similar to Os10g0210500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064323.1); similar to nodulin MtN21 family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47055.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.141681438361132 -1.0681682933943 0.31518087413247 1 1.33059863235311 16.5828975894528 -0.141681438361132 0.165315036229142
AT2G01910_at 7.07348619218158 7.1427765811584 7.10414111437557 6.9969105199164 7.87391517286669 7.6848532003289 7.37483102531548 6.96140395726576 8.37285091492283 7.83353449200274 8.38639422374712 8.37167450624018 8.1791351746995 8.05653791805978 7.62742846377608 7.73453063288671 7.62342360015687 8.02054942332863 8.05996896285182 0.132019771421803 0.126032075390375 0.123325093009644 0.123933797970023 0.124844258104224 0.12937971929894 0.124011889176993 0.128552107376446 0.127687898719769 0.129459607735584 0.126721668252426 0.130604689965248 0.130223766493401 0.12990339629902 0.13066792071171 0.129265922863048 0.133194566038385 0.125399101538981 0.126115062235266 2 2 + 419362 420145 419906.636 416910 420587 + gene protein_coding_gene FALSE TRUE AT2G01910.1|AT2G01910.2 ATMAP65-6; microtubule binding|ATMAP65-6 Binds microtubules. Induces a crisscross mesh of microtubules, not bundles. Not involved in microtubule polymerization nor nucleation. Localizes to mitochondria. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14690.2); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO06976.1); similar to Os03g0237600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049496.1); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14690.2); similar to putative microtubule-associated protein MAP65-1a [Oryza sativa (japonica cultivar-group)] (GB:BAD37971.1); contains InterPro domain MAP65/ASE1; (InterPro:IPR007145) 0.0940025079138258 1.06722863114280 0.31558105269434 1 1.32967916111250 15.3209117368199 0.0940025079138258 0.0817151457484317
AT4G18700_at 7.91405273660003 7.75854520727304 7.94944914867256 7.70471372576851 8.6222951772092 7.8777202497947 8.46271312111878 7.79570631602215 8.4520791954968 8.57198766343707 8.81480347552637 8.72478408919047 8.93776353018164 8.83913277035129 8.22802169273618 8.75157873724595 8.92034201012082 8.68444115265013 8.45046049599625 0.124804100065301 0.117635486662495 0.118512537228458 0.125802579104166 0.123416353616477 0.115392128440795 0.132063912970184 0.122731629951620 0.124553037182714 0.122729633489261 0.117230958696014 0.122337946316638 0.116528995037336 0.117149084260586 0.124252534882276 0.120754977912787 0.138448712554664 0.128905752536283 0.118923960117709 4 4 - 10289123 10289623 10289364.818 10288809 10290861 - gene protein_coding_gene FALSE TRUE AT4G18700.1 CIPK12 (CIPK12); kinase Encodes CBL-interacting protein kinase 12 (CIPK12). similar to CIPK19 (CIPK19), kinase [Arabidopsis thaliana] (TAIR:AT5G45810.1); similar to CIPK13 (CIPK13), kinase [Arabidopsis thaliana] (TAIR:AT2G34180.1); similar to CIPK18 (CIPK18), kinase [Arabidopsis thaliana] (TAIR:AT1G29230.1); similar to putative serine-threonine kinase [Gossypium hirsutum] (GB:AAT64036.1); similar to CBL-interacting protein kinase 19 [Populus trichocarpa] (GB:ABJ91226.1); similar to CBL-interacting protein kinase 18 [Populus trichocarpa] (GB:ABJ91225.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.150944772024032 1.06655541880193 0.315868000199120 1 1.32902078487332 16.6252082355876 0.150944772024032 0.180123880071343
AT4G28200_at 5.38420976635968 6.09805646636113 5.61686295053352 6.14291215132651 6.38140958351987 5.65484133935817 6.02347610883364 5.88328161202301 4.59873445011025 4.50143148808433 4.54255959341694 4.93926268608324 4.64260777961681 4.72101851521099 4.34441771965463 4.85293603971197 4.78162005359705 4.33118194040608 4.15698618027107 0.223148058096619 0.222717929418784 0.230257730946297 0.223233413975098 0.224495050987605 0.239770521347482 0.2182491257828 0.225469013342814 0.234606209907974 0.224549324593435 0.218149348110691 0.221916488161824 0.225926392360428 0.222815510933754 0.221263119636666 0.220229210911544 0.235937844003821 0.228092896062173 0.225642735195046 4 4|0 -|/ 13987825 13988546 13988191.5 13987608 13990456 - gene protein_coding_gene FALSE TRUE AT4G28200.1 similar to Ribosomal protein L29 [Medicago truncatula] (GB:ABE89112.1); similar to Os02g0103900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045609.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.163575176298576 1.06473774454447 0.316643773646811 1 1.32724471420427 10.4298818708482 0.163575176298576 0.199865833943062
AT2G47910_at 9.32383032201443 9.24871143316092 9.0342977293607 9.25941189883908 9.79892306847326 9.65645267437128 9.3849209806933 9.39574201683425 9.07442112761608 9.27239161181973 9.05817418572197 8.4722546682589 9.02765223326156 9.00973718549998 8.98708504251665 9.02471953147961 9.26612174962723 8.68607681989766 9.25528877562233 0.121300584869681 0.116590062256585 0.122681111848972 0.118553196408598 0.120293895483291 0.119022432068136 0.116118524500553 0.118443650641414 0.128459798779151 0.124742382069708 0.121637397347328 0.129157803445135 0.117458640514408 0.121511968124182 0.131441684671557 0.120784115833493 0.127066206096820 0.125612922549524 0.119588363052787 2 2 + 19621962 19622589 19622350.364 19621768 19622839 + gene protein_coding_gene FALSE TRUE AT2G47910.1|AT2G47910.2 CRR6 (CHLORORESPIRATORY REDUCTION 6) similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80941.1) -0.0801263367005398 -1.06385287475421 0.317021967433428 1 1.32638091499479 18.4588753564946 -0.0801263367005398 0.0479377489396116
AT3G01610_at 4.70206280671221 4.99524963905743 4.78718903796778 4.59806773149951 4.6419063493033 4.94471286637563 4.73725909163399 4.6120857014588 4.69949516528466 4.56820889465062 4.90148249363665 4.51381388008638 4.44224162652989 4.42828134698103 4.63735944773286 5.14714258926726 4.73469342449926 4.51188100005323 5.2353927401972 0.202107165840224 0.20449592825969 0.199475314391376 0.207854944848256 0.204565830241057 0.209317986595915 0.209518617533569 0.205616829195038 0.206747943946483 0.214880913339883 0.205941025911734 0.200655086940154 0.200617704354594 0.205353819679094 0.208835339250282 0.200187158821959 0.208593424063040 0.215483605565711 0.210583362475427 3 0|3 /|+ 234346 235031 234703.7 231658 235221 + gene protein_coding_gene FALSE TRUE AT3G01610.1 CDC48C (EMBRYO DEFECTIVE 1354); ATPase AAA-type ATPase - Over 90% homologous to CDC48a Identical to Cell division control protein 48 homolog C (AtCDC48c) (CDC48C) [Arabidopsis Thaliana] (GB:Q9SS94;GB:Q8L769); similar to (Cell division control protein 48 homolog E), ATPase [Arabidopsis thaliana] (TAIR:AT5G03340.1); similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to CDC48 (CELL DIVISION CYCLE 48), ATPase [Arabidopsis thaliana] (TAIR:AT3G09840.1); similar to Os06g0109400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056576.1); similar to 26S proteasome regulatory complex, ATPase RPT1 (ISS) [Ostreococcus tauri] (GB:CAL57923.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.094224468687442 -1.06378163809957 0.317052429290984 1 1.32631139792907 9.50180544107232 -0.094224468687442 0.0828289503082286
AT1G31300_at 7.47063878375238 7.71960042248879 7.83338116432676 7.58201775210986 8.1535116473662 7.94805233917402 8.42129017028893 8.60519007779166 8.07725572182078 8.00317218385625 8.4093899908289 7.77251270667765 7.98002322925107 8.32486633387044 7.64254474322836 8.01385727429097 7.78843137281655 7.80522317924395 7.84669536454634 0.192838796836048 0.180331852163201 0.191894964158097 0.197197326277391 0.184201473232449 0.188940456868440 0.190075438149975 0.198505531531587 0.194331147235231 0.185075389752534 0.180980548068261 0.184056476343801 0.195333703976356 0.192679199324313 0.192699053296439 0.184556395352161 0.204277353919193 0.189151626234661 0.184755629939945 1 1|0 +|/ 11194735 11195626 11195080.625 11193616 11196293 + gene protein_coding_gene FALSE TRUE AT1G31300.1|AT1G31300.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G19645.2); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD53332.1); similar to Os05g0511000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056013.1); similar to Os03g0666700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050848.1); contains InterPro domain TRAM, LAG1 and CLN8 homology; (InterPro:IPR006634); contains InterPro domain Protein of unknown function DUF887, TLC-like; (InterPro:IPR010283) -0.091770395400681 -1.06338046429202 0.317224019716066 1 1.32591997294520 15.9381172249209 -0.091770395400681 0.0776238745801823
AT4G35780_at 6.25937508833983 6.43596415575606 6.51433104345207 6.0383669307077 6.81277566012818 6.56939695307031 6.4656772251652 6.27766131981226 5.95636474906937 6.49542894570607 6.20174751702909 5.97259535994607 6.4041422176203 6.31281419351762 5.35891808130178 6.0204746755074 6.01288416863699 5.56591574373971 6.48906050960253 0.188860150444997 0.175842509037653 0.179193743863838 0.182898724108860 0.170027578291379 0.183582647819699 0.172099935758971 0.167415072131606 0.187363350633793 0.171682116372724 0.169367744711167 0.169644674163094 0.176520491174634 0.172219974261217 0.179788092564419 0.16816783712491 0.190677491845597 0.171943171929217 0.174475536886200 4 4|0 -|/ 16946751 16947810 16947224.5 16946526 16950599 - gene protein_coding_gene FALSE TRUE AT4G35780.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G17700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G38470.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06436.1); similar to Protein kinase; Amino acid-binding ACT [Medicago truncatula] (GB:ABE89440.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06437.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) -0.104191686946195 -1.0632378606517 0.317285031670517 1 1.32578086121802 12.5690958284481 -0.104191686946195 0.102717631981829
AT3G55980_at 7.53857205112928 7.87384901951098 8.10797470688934 8.1973975410336 7.15417894387479 7.2069015271138 6.55562325152798 6.84010469903543 7.43978152098717 6.014648176611 6.421460152866 6.73922605473067 5.70085232356047 6.46484657381278 6.5766860953999 6.02671028202554 5.68284126416855 6.8120693418869 6.29666489508431 0.238398972382319 0.23616551411686 0.238627071384692 0.241415903945646 0.235114368913624 0.239803942907967 0.239725156592305 0.238658642971956 0.239800149422279 0.235114368913624 0.235605682209396 0.242037044580345 0.241324156327651 0.243239759871094 0.235913751423924 0.239726157774242 0.244696092389575 0.241039545051094 0.238957396455681 3 3 + 20788999 20789517 20789219.545 20787274 20789821 + gene protein_coding_gene FALSE TRUE AT3G55980.1 zinc finger (CCCH-type) family protein similar to CZF1/ZFAR1 [Arabidopsis thaliana] (TAIR:AT2G40140.2); similar to Cys-3-His zinc finger protein [Capsicum annuum] (GB:ABI30334.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.0919821189612429 1.06286807062585 0.317443286216938 1 1.32542019104375 13.8777175718230 0.0919821189612429 0.078184797379664
AT2G18510_at 6.68691797921416 6.49693648508366 5.99547086342457 6.58582015077995 6.17985641086044 6.61523425287187 7.1133058742646 7.45102607565656 4.91909894674448 5.53463913319373 4.87278180127288 5.39241259877107 5.83879531457316 5.53467381885853 5.675695783136 5.86591932098225 6.42040493809368 5.82047065821743 5.56541777932323 0.236516480809913 0.235964737647715 0.237065578042288 0.239331973618668 0.239822594731781 0.238389837923357 0.247736800316395 0.236986577491661 0.245557762928183 0.237474785424195 0.245424857616031 0.238629615279953 0.240438909233567 0.245387637391726 0.241498182169811 0.240723657757046 0.252600371110655 0.240121374759709 0.242489258114974 2 2|0 -|/ 8038660 8039253 8038955.9 8038264 8040701 - gene protein_coding_gene FALSE TRUE AT2G18510.1 EMB2444 (EMBRYO DEFECTIVE 2444); RNA binding similar to PAB8 (POLY(A) BINDING PROTEIN 8), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT1G49760.1); similar to PREDICTED: similar to Splicing factor 3b, subunit 4 [Strongylocentrotus purpuratus] (GB:XP_784135.2); similar to PREDICTED: similar to splicing factor 3b, subunit 4 (predicted) isoform 6 [Bos taurus] (GB:XP_885204.1); similar to Os10g0457000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064759.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.127512762293111 -1.06283863901646 0.317455884341677 1 1.32539148930654 12.1492524610154 -0.127512762293111 0.143563842893535
AT3G26730_at 8.46067006206596 8.4215386132302 7.92631132232436 7.71765637298935 8.47632537799407 7.87800622379507 8.15773087153891 7.90960401928892 7.8094822151708 7.99072259664384 8.31088256321153 8.32076695161023 8.07619023428988 7.76792073617861 7.60105862535516 8.42052307836414 7.7773941772491 7.94225723285592 8.24248473842616 0.168919498336336 0.168814125666423 0.172940084286159 0.173451875786937 0.173839391945676 0.182986372414658 0.173894822806175 0.165781250078482 0.175911245163453 0.161758061806997 0.171192845426571 0.166210896024976 0.170915840310954 0.180894835221263 0.174558510085113 0.17369026907817 0.181331541444618 0.171979995891101 0.166341745120861 3 3 + 9827497 9828482 9827992.727 9824922 9828675 + gene protein_coding_gene FALSE TRUE AT3G26730.1 zinc finger (C3HC4-type RING finger) family protein similar to MGC130952 protein [Xenopus laevis] (GB:AAI08525.1); similar to Os02g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046958.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.112458358723116 -1.06240490810160 0.317641586822344 1 1.32496858324266 16.1391573828881 -0.112458358723116 0.117959434096591
AT3G18980_at 7.03838167350898 7.5221624180813 6.56370661241094 6.1747271213309 7.66780369630833 7.17351295279497 8.31126143602635 7.70661992288495 6.63791222979989 6.89365616206164 7.74021719231011 7.9796051653258 7.15814310769761 7.39412156404161 7.85962249900538 7.78976951801001 6.91508197947252 6.86787038847081 7.48168712312843 0.235192781653795 0.228820178739959 0.250227815647590 0.241184853565259 0.242657194395558 0.24944139340929 0.228820178739959 0.235915172393442 0.248429689201177 0.229858317107449 0.231802580037460 0.229289126700738 0.245234366982394 0.237566875799734 0.228820178739959 0.232207060830791 0.242393157577185 0.2434777881228 0.240116892048027 3 3 + 6547199 6547712 6547398 6546469 6548068 + gene protein_coding_gene FALSE TRUE AT3G18980.1|AT3G18980.2 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G18910.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) -0.145516672559515 -1.06205509570833 0.317791420983671 1 1.32462759518243 14.5035081950625 -0.145516672559515 0.172644345148567
AT3G22960_at 9.54205946438593 9.62241597545864 9.11061300692006 8.96947081287979 9.72687864581144 9.407967793372 9.7425214769397 9.71088115138827 9.56931833656042 9.64350753160334 9.94705022541544 9.8727916833817 9.67589671445044 9.8933207190549 10.0595098702058 9.6901862921716 9.41292045546257 9.94087920708696 9.67988535091948 0.109639947066826 0.106143318515815 0.117439720111432 0.120975352603695 0.112516307384751 0.119243488406441 0.109639613823114 0.116971509318468 0.11908242113211 0.108487989833682 0.108209752388395 0.108263308700087 0.108223631090159 0.110061473190273 0.114574965387809 0.106844410792866 0.112548691267872 0.110121011872087 0.106899574933976 3 3 + 8141103 8141725 8141400.727 8139242 8141992 + gene protein_coding_gene FALSE TRUE AT3G22960.1 pyruvate kinase, putative similar to pyruvate kinase, putative [Arabidopsis thaliana] (TAIR:AT5G52920.1); similar to Pyruvate kinase isozyme A, chloroplast precursor (GB:Q40545); similar to Pyruvate kinase isozyme A, chloroplast precursor (GB:Q43117); similar to ATP:pyruvate phosphotransferase (GB:AAA33871.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Pyruvate kinase; (InterPro:IPR001697) -0.0850356480440193 -1.06134770895065 0.318094581823177 1 1.32393830914503 19.2003376086935 -0.0850356480440193 0.0621754195316497
AT3G12140_at 5.8995453105888 6.44919033968695 5.88620626901472 6.04998152154746 6.9940437424118 6.5567519567861 6.4580984698146 6.38339098495029 5.79866060492059 6.0881275727325 5.80687093655832 5.43499661091882 5.70525486838691 5.70235750832207 5.30824884352857 5.55032148492556 5.84711909608694 5.3610394803405 5.80323274011914 0.231192523673029 0.223304315373384 0.234296136971625 0.247805313485011 0.224697043939625 0.230614779016388 0.221119013849704 0.221319710210049 0.239174427672631 0.227545858031687 0.227774594262581 0.221119013849704 0.232853587432631 0.227877339886965 0.226586374801019 0.230657628365594 0.24770449700554 0.231676198021523 0.221645617057265 3 3|0 -|/ 3868959 3870258 3869516.9 3868594 3871734 - gene protein_coding_gene FALSE TRUE AT3G12140.1|AT3G12140.2|AT3G12140.3 emsy N terminus domain-containing protein / ENT domain-containing protein similar to emsy N terminus domain-containing protein / ENT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G06780.1); similar to unknown [Oryza sativa (japonica cultivar-group)] (GB:AAL87186.1); similar to Os08g0328300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061559.1); similar to Os09g0279000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062755.1); contains InterPro domain ENT; (InterPro:IPR005491) -0.116478969722043 -1.05993241267563 0.318701802014676 1 1.32256025777342 12.0777509457955 -0.116478969722043 0.125478033979752
AT1G29120_at 6.80208287535163 7.1818191756511 7.31344352089035 7.00832968185865 7.34203517776555 7.39020270050998 8.33538860434204 8.35730701360431 7.31348983980929 7.73457686816469 7.76578521438328 7.75466015680179 7.76649729625419 7.72183786450457 7.44445433413667 8.29588286973286 8.18767297121815 7.79355620829325 7.82750198043822 0.180973954145159 0.172304206548771 0.180268268640342 0.178722189620798 0.169553046702119 0.177248376863707 0.173831216847177 0.174050004323093 0.201696025473188 0.170555590948971 0.176228243072538 0.169553046702119 0.173313625587674 0.179526071836425 0.188474547616212 0.169553046702119 0.184651320955337 0.178181555029977 0.169553046702119 1 1|0 +|/ 10177127 10178093 10177730.2 10174228 10178475 + gene protein_coding_gene FALSE TRUE AT1G29120.1|AT1G29120.2|AT1G29120.3|AT1G29120.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25770.1); similar to Protein of unknown function DUF676, hydrolase-like [Medicago truncatula] (GB:ABE79089.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Protein of unknown function DUF676, hydrolase-like; (InterPro:IPR007751) -0.094771422684805 -1.0594081578286 0.318926957212659 1 1.32205014809848 15.1995675573565 -0.094771422684805 0.0847958386610679
AT1G06650_at 10.0341940987443 10.3033744843198 10.4923691875535 10.5198516648653 10.6236417746121 10.0627012703601 10.6192143527196 10.0916706157202 9.4268295288334 10.0500693128697 9.94095487908056 9.79858638319545 9.9689080354934 9.79214563738007 9.45329812587349 10.1098299994325 9.97536016724743 9.77632941680447 9.81348393408168 0.134205178899001 0.128143474066164 0.134327988577972 0.127981172851815 0.129774910751563 0.134063178884087 0.134183694235808 0.135049575771072 0.152353310708363 0.133494498504669 0.139689658296289 0.130959912832635 0.133169450880044 0.137052587173304 0.133388102561772 0.128119951759662 0.133361210859236 0.142418530482905 0.132176004731978 1 1 + 2036554 2037157 2036861.364 2035838 2037365 + gene protein_coding_gene FALSE TRUE AT1G06650.1|AT1G06650.2 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G06640.1); similar to unknown [Prunus armeniaca] (GB:AAD38147.1); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.125496620886818 1.0576484620833 0.319683608324902 1 1.32033931194949 20.1510709340244 0.125496620886818 0.141245898893249
AT2G32000_at 5.88727617454764 5.81560811267228 5.07394169997749 5.2897879882486 5.69594582218056 6.01840474335536 5.88498383525216 5.17469657683599 5.0767889063306 5.70705311571093 5.38846700649304 5.84873048024684 5.31461195625735 5.14581482661026 5.43060421137816 6.00649508507964 5.63832009611506 5.43385965418389 6.03099796922244 0.230484628116097 0.224859975383076 0.224859975383076 0.228279826850586 0.227831118770535 0.230513872679891 0.224859975383076 0.230174950009422 0.239598961651765 0.230192557534014 0.233937403161263 0.226006555889579 0.239320673045774 0.228991786491625 0.245051117282538 0.230020789423100 0.227954543750178 0.230267974872063 0.229886131173033 2 2 - 13623099 13623621 13623419.727 13622977 13628718 - gene protein_coding_gene FALSE TRUE AT2G32000.1|AT2G32000.2 DNA topoisomerase family protein|DNA binding / DNA topoisomerase type I similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to topoisomerase (DNA) III beta [Mus musculus] (GB:NP_035754.1); similar to topoisomerase (DNA) III beta [Gallus gallus] (GB:NP_001006181.1); similar to MGC53016 protein [Xenopus laevis] (GB:AAH46848.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain DNA topoisomerase, type IA, central; (InterPro:IPR013497); contains InterPro domain TOPRIM; (InterPro:IPR006171); contains InterPro domain DNA topoisomerase, type IA, domain 2; (InterPro:IPR003601); contains InterPro domain DNA topoisomerase, type IA; (InterPro:IPR000380); contains InterPro domain Toprim subdomain; (InterPro:IPR006154)|similar to DNA topoisomerase III alpha, putative [Arabidopsis thaliana] (TAIR:AT5G63920.1); similar to topoisomerase (DNA) III beta [Mus musculus] (GB:NP_035754.1); similar to topoisomerase (DNA) III beta [Gallus gallus] (GB:NP_001006181.1); similar to MGC53016 protein [Xenopus laevis] (GB:AAH46848.1); contains InterPro domain DNA topoisomerase, type IA, DNA-binding; (InterPro:IPR003602); contains InterPro domain DNA topoisomerase, type IA, central; (InterPro:IPR013497); contains InterPro domain TOPRIM; (InterPro:IPR006171); contains InterPro domain DNA topoisomerase, type IA, domain 2; (InterPro:IPR003601); contains InterPro domain DNA topoisomerase, type IA; (InterPro:IPR000380) -0.125102430297819 -1.05752155034862 0.319738232874253 1 1.32021600632715 11.1704854082839 -0.125102430297819 0.140613029865731
AT3G28050_at 9.62832628364128 9.91125411334777 9.98951726925075 10.0784025042305 10.5463518820541 10.0571476178838 9.91058542018316 10.0997883278162 9.57928670278962 9.66310519579635 9.5484749897394 9.57429323159513 9.59122213893884 9.4926794165198 9.0374213487122 9.46809698269313 9.41655509939865 9.8677525425848 9.47114028246262 0.109384887605102 0.104315359626946 0.113239195575720 0.108525772432026 0.108658650441364 0.109313277342728 0.115629275130699 0.103425850579419 0.110328353341285 0.10366216505966 0.104311551100984 0.104614638125813 0.102484978922828 0.102959073814987 0.117120377094523 0.103176650107211 0.118061010389249 0.109695891442537 0.104505797578123 3 3|0 +|/ 10445476 10446402 10445781 10444051 10446635 + gene protein_coding_gene FALSE TRUE AT3G28050.1 nodulin MtN21 family protein similar to nodulin MtN21 family protein [Arabidopsis thaliana] (TAIR:AT5G40240.1); similar to Protein of unknown function DUF6, transmembrane [Medicago truncatula] (GB:ABE93902.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) 0.104375428598792 1.05670406522777 0.32009026321281 1 1.31942201502863 19.5630413585287 0.104375428598792 0.104274201362879
AT4G32620_at 6.66064213408327 6.85478545161347 6.43644889227844 6.94607548238352 6.9993683421197 7.2357270566018 6.67345330743135 7.26914182373998 6.09076487024193 6.31805306004329 6.70206892214853 6.72625735899624 6.48252579036967 6.77799235781606 5.70613813329796 6.61450041556868 6.61787318546119 6.66523786421641 6.55254139655511 0.235043296369528 0.228866160198175 0.23194738010279 0.226968755421495 0.226325290196775 0.244488092550286 0.238617970812787 0.228057519193766 0.248409430494768 0.233453372169166 0.23453647893179 0.226325290196775 0.237315271543206 0.240710568444485 0.232523043170778 0.229991896036635 0.246786206987008 0.233638673701534 0.23256276660166 4 4 + 15736553 15737168 15736880.636 15731679 15737278 + gene protein_coding_gene FALSE TRUE AT4G32620.1 nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04670.1); similar to Os01g0179500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042200.1); similar to Os02g0100200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045580.1); similar to Tudor [Medicago truncatula] (GB:ABE86625.1); contains InterPro domain Tudor; (InterPro:IPR002999) 0.128010204333206 1.05661482151726 0.320128712065665 1 1.31933536394472 13.312968992497 0.128010204333206 0.145625385405068
AT4G32410_at 9.80012279595506 9.94680509790797 9.16563767705036 9.61565117572088 10.4123536130977 9.50500214134547 10.812227014785 10.4972996896455 10.7753470608972 10.7249919008191 11.3181239960538 11.0752104098004 10.9288337217085 11.1710005824155 10.9419882077387 10.7877649700983 10.3334733294262 11.1202678278529 10.5270011779015 0.120608976664048 0.119480623158083 0.135745940291246 0.121779517064484 0.114270495119164 0.131293280791599 0.113790696882448 0.118194975732946 0.121792639961198 0.117000611612529 0.113790696882448 0.113790696882448 0.116133174794081 0.117959235973285 0.119894345746121 0.113790696882448 0.121836528251599 0.118591556727598 0.115644042956418 4 4 - 15641056 15641561 15641306.273 15640626 15646671 - gene protein_coding_gene FALSE TRUE AT4G32410.1 CESA1 (CELLULASE SYNTHASE 1); transferase, transferring glycosyl groups cellulose synthase catalytic subunit Identical to Cellulose synthase A catalytic subunit 1 [UDP-forming] (EC 2.4.1.12) (AtCesA-1) (Radially swollen protein 1) (AtRSW1) (CESA1) [Arabidopsis Thaliana] (GB:O48946); similar to CESA3 (CELLULASE SYNTHASE 3), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G05170.1); similar to CESA10 (CELLULASE SYNTHASE 10), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G25540.1); similar to IRX3 (IRREGULAR XYLEM 3, MURUS 10), cellulose synthase [Arabidopsis thaliana] (TAIR:AT5G17420.1); similar to cellulose synthase [Populus tremuloides] (GB:AAO25536.1); similar to cellulose synthase 5 [Eucalyptus grandis] (GB:AAY60847.1); similar to CesA1 [Acacia man (GB:AAT66940.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.152824831836117 -1.05635927072105 0.320238830783609 1 1.31908726749907 20.7870688642765 -0.152824831836117 0.185297327520922
AT2G02180_at 8.13341381448546 8.34260462916511 8.32076806410629 7.81465800907842 9.22571238778849 8.69728501011232 8.54492010529242 8.14069634985773 8.0872192085049 7.87522678753542 8.2617825953648 7.8444487772458 7.7782547344043 7.81978786652508 7.79946855492148 8.07859375543375 7.98928465970444 8.17847386948341 7.8367791613338 0.180922587626342 0.172718743828716 0.173709708091003 0.189324799728183 0.186463907310384 0.170682799332606 0.184597530242319 0.176199312513046 0.189651855631954 0.180683668646461 0.179202005514948 0.177403930332903 0.170682799332606 0.179783398670698 0.180621547178322 0.177242238392211 0.181987725707072 0.182709742029760 0.181950848236996 2 2|0 +|/ 561615 562889 562341.25 560863 563232 + gene protein_coding_gene FALSE TRUE AT2G02180.1 TOM3 (tobamovirus multiplication protein 3) Necessary for the efficient multiplication of tobamoviruses. similar to (TOM THREE HOMOLOG), virion binding [Arabidopsis thaliana] (TAIR:AT1G14530.2); similar to unknown [Brassica rapa] (GB:ABJ15786.1); contains InterPro domain Protein of unknown function DUF1084; (InterPro:IPR009457) 0.129941971124271 1.05506165744462 0.320798435112756 1 1.31782819914452 16.3534257482825 0.129941971124271 0.149122572720922
AT3G54890_at 14.2119307669499 14.3124803110523 14.3196766233881 14.3159804321471 14.2553323491369 14.3196074214614 14.3680113825876 14.5366091880706 14.7374162806173 15.0289256104793 15.2254050491895 15.2088469045256 15.2850977998962 15.0118755991871 15.0057178114401 15.0409021304042 14.9225484860536 15.2667722412915 14.9770548201203 0.0600020827853984 0.0584698742645759 0.060898120225276 0.0598148527533368 0.0588059037026981 0.0600642339740732 0.0590589756953301 0.0578340740834295 0.071901981242851 0.0586374523583281 0.0613120283490772 0.0585662839092641 0.0582154107848037 0.0622750160695239 0.0618097343122022 0.0578340740834295 0.060600682444534 0.0584527862743133 0.059203505771704 3 3 - 20350717 20351750 20351050.818 20350482 20352081 - gene protein_coding_gene FALSE TRUE AT3G54890.1|AT3G54890.2|AT3G54890.3|AT3G54890.4 LHCA1; chlorophyll binding|LHCA1 Encodes a component of the light harvesting complex associated with photosystem I. similar to LHCB4.2 (LIGHT HARVESTING COMPLEX PSII) [Arabidopsis thaliana] (TAIR:AT3G08940.2); similar to photosystem I light-harvesting chlorophyll a/b-binding protein [Nicotiana tabacum] (GB:CAA45523.1); similar to chlorophyll a/b-binding protein (GB:AAA34140.1); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to chlorophyll a/b-binding protein (GB:AAA34140.1); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to chlorophyll a/b-binding protein (GB:AAA34140.1); similar to chlorophyll a/b-binding protein type I precursor (cab-6B) - tomato (GB:S06329); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344)|similar to LHCB4.3 (LIGHT HARVESTING COMPLEX PSII), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G40100.1); similar to photosystem I light-harvesting chlorophyll a/b-binding protein [Nicotiana tabacum] (GB:CAA45523.1); contains InterPro domain Retroviral matrix, N-terminal; (InterPro:IPR010999); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) 0.0759107383555433 1.05401210980614 0.321251613623580 1 1.31681067649470 29.3476342209263 0.0759107383555433 0.0357517606729324
AT1G25420_at 7.72534255651951 7.44264317816704 7.64579053461594 7.5897149915292 8.00224607558656 7.84862240093115 7.978821586704 7.85018558287731 7.58468311309086 8.01341472495285 7.56641375299638 7.74853738367389 7.63854003133308 7.75875552750407 7.58917751583699 7.72407716395669 7.75347760206709 7.41324829505125 7.91844512642824 0.148844304975623 0.14068124111874 0.148858076496119 0.146914529910873 0.14068124111874 0.148088434659755 0.142178485345151 0.143009454644124 0.164667357595976 0.152440095298080 0.152060364531155 0.14068124111874 0.145024350970342 0.143452337331923 0.14068124111874 0.14068124111874 0.149598348436200 0.146550326992694 0.148834742648980 1 1 + 8917059 8917899 8917637.909 8916046 8918219 + gene protein_coding_gene FALSE TRUE AT1G25420.1|AT1G25420.2|AT1G25420.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34220.2); similar to hypothetical protein [Solanum tuberosum] (GB:BAE46414.1); similar to Os08g0175200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061111.1); similar to Os01g0687700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043915.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34220.2); similar to Os08g0175200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061111.1); similar to Os01g0687700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043915.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD46466.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) -0.0837369855864023 -1.05202463125995 0.322111134628109 1 1.31488592412624 15.5043588953045 -0.0837369855864023 0.0607446175900821
AT1G75660_at 8.2372603003687 8.01165256635766 8.18659203503228 8.01537548515807 8.27773762884459 8.39314518436726 7.86946353058418 7.80857891913739 8.02742785287007 7.77338561034244 7.34635195729064 7.37749088552969 7.40420534524884 7.62813818717949 7.48693674526769 7.59489233646136 7.63710879571729 7.74845337828608 7.97924900393723 0.129900550948926 0.126543572247866 0.137809934384398 0.135584756061770 0.128013837195340 0.137777344599673 0.126543572247866 0.136287753906019 0.129857429921900 0.132261001160487 0.129889876867454 0.13024535462468 0.131756943239628 0.135950385510696 0.132100432483835 0.132283592409176 0.135899146641049 0.139168676800955 0.12773812967326 1 1 + 28418001 28418335 28418159.455 28411808 28418778 + gene protein_coding_gene FALSE TRUE AT1G75660.1 XRN3 (5'-3' exoribonuclease 3); 5'-3' exoribonuclease Encodes a putative exoribonuclease. similar to XRN2 (EXORIBONUCLEASE 2), 5'-3' exonuclease/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT5G42540.1); similar to putative 5-3 exoribonuclease [Oryza sativa (japonica cultivar-group)] (GB:BAB86550.1); similar to 5'-3' exoribonuclease 2 [Gallus gallus] (GB:NP_001026204.1); similar to Zinc finger, CCHC-type; Putative 5-3 exonuclease [Medicago truncatula] (GB:ABE84268.1); contains InterPro domain Putative 5-3 exonuclease; (InterPro:IPR004859); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.0811332654693537 -1.05048344142019 0.322778874467953 1 1.31339525340035 15.8272930526925 -0.0811332654693537 0.0539641484566103
AT2G18910_at 7.38962883336298 7.43665964795258 6.22524833427908 6.7500286886616 7.33945327501823 7.14987415553425 7.3146083603885 7.16578497279635 7.68453271739791 6.88529870552545 7.61225977093225 7.27575085259604 7.22142796839345 7.43839621600444 7.73801172314915 7.6755172339727 7.1634925156682 7.46329797703497 7.00357234579743 0.181667934458795 0.18131803599679 0.189861423739395 0.182874871843370 0.180975003691260 0.193568506203837 0.184486633337907 0.183878276455128 0.181920887388183 0.19214945670488 0.181771432087759 0.178499643333464 0.178522612483116 0.1842248472898 0.185658343102367 0.182019477023719 0.178499643333464 0.180986191242464 0.178499643333464 2 2|0 -|/ 8200101 8201189 8200940.3 8199790 8201420 - gene protein_coding_gene FALSE TRUE AT2G18910.1 hydroxyproline-rich glycoprotein family protein similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE84008.1) -0.101567323803256 -1.04948583955920 0.323211668501482 1 1.31243122793608 14.4162377193954 -0.101567323803256 0.100266468575534
AT2G29670_at 11.6498643801837 11.8207090368284 11.7352576583802 11.7040073646372 12.3894734431756 12.2849232131563 11.9248336111827 11.8836263808501 11.9362973745618 11.9441353546115 11.6676788585374 11.6567714121432 11.9224543164282 12.039019756456 11.3128366259566 12.0808786754451 12.0777824723646 11.8835655563895 11.7827082260356 0.064728343488619 0.0607276852329359 0.0617149316334392 0.0634595027679736 0.0646296860471877 0.062834531476372 0.0643740576596488 0.0608419783654831 0.0632705742932108 0.0642284966040523 0.0609591973616041 0.0613581375042213 0.0639504529410256 0.0622267014127891 0.0675233397294034 0.061677489173333 0.0648935470821587 0.064178634219353 0.0643941512010851 2 2 - 12689406 12690751 12690082.273 12689220 12692164 - gene protein_coding_gene FALSE TRUE AT2G29670.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G07280.2); similar to Os05g0447700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055695.1); similar to Os01g0855200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044840.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:AAM93690.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0755334375274392 1.04861060177347 0.323591746151256 1 1.31158601540619 23.7830054415249 0.0755334375274392 0.035799009817624
AT2G15080_at 8.96592477960719 8.92826318976424 9.71352706412757 9.76013620461102 9.89882324087127 9.10842972828456 8.78623447508897 8.1090796650907 8.40656499632932 9.2558880630253 8.10249767914054 8.18117274396078 8.55225781417598 8.87511177700572 6.8972871713948 8.82390587172934 9.03941739028608 8.44649041615644 9.30914503305683 0.164364738413878 0.163063676755946 0.166826677756606 0.166101742935492 0.173613373838367 0.171322720608164 0.170841650093901 0.169067161363988 0.189554420822796 0.169072938424996 0.168099528973624 0.165970911948608 0.167751671997307 0.165804437290440 0.194257603610597 0.162385758324956 0.175810914935584 0.176003635701441 0.170358006594481 2 2 + 6543212 6543740 6543502.636 6540769 6544077 + gene protein_coding_gene FALSE TRUE AT2G15080.1|AT2G15080.2 disease resistance family protein similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT5G27060.1); similar to disease resistance family protein [Arabidopsis thaliana] (TAIR:AT3G11080.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G11010.1); similar to disease resistance protein [Lycopersicon esculentum] (GB:AAC78591.1); contains InterPro domain Bacterial surface protein 26-residue repeat; (InterPro:IPR011889); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.148544221298279 1.04829415582484 0.323729249837749 1 1.31128055579887 17.8364524461565 0.148544221298279 0.180413230174479
AT2G20140_at 6.37664626946797 6.8233110719176 5.49409230224511 5.79591484549953 6.30732226096587 5.75016254340492 6.62603028146227 6.94554034236852 6.2260610397249 5.97047645460306 6.61353331347865 6.964750265282 6.40810760994306 6.67620722362774 7.43011460799852 6.64069402493955 5.9219175048442 6.41754990033034 5.89754264762233 0.269679396906964 0.264207649768547 0.28628432744934 0.282571234059974 0.273691246689486 0.279171303699722 0.288256962845576 0.271888616893363 0.272069813068519 0.264064067400727 0.266314707007926 0.266697568680609 0.26770266940024 0.265621915834982 0.264064067400727 0.266284705011574 0.271467206513364 0.269674899028883 0.270746806667411 2 2|0 +|/ 8701031 8701892 8701357.5 8699781 8702165 + gene protein_coding_gene FALSE TRUE AT2G20140.1 26S protease regulatory complex subunit 4, putative similar to RPT2A (regulatory particle triple-A 2A), ATPase [Arabidopsis thaliana] (TAIR:AT4G29040.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABD32889.1); similar to 26S proteasome subunit 4-like protein [Brassica napus] (GB:CAC14432.1); similar to 26S proteasome subunit 4-like [Solanum tuberosum] (GB:ABB02638.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.126629872143244 -1.04777036312413 0.323956950090564 1 1.31077510055447 12.5976121664776 -0.126629872143244 0.145110223169731
AT3G57480_at 4.92657221654119 5.56440802220433 5.61221137982584 5.45955273812443 5.09909510897602 4.53012809863820 4.23645700660481 4.72480686073153 4.8044236146272 4.92032059239398 4.69949963596021 4.50274132110479 4.5164906766305 4.52890933713111 4.22691418879519 4.18503747897406 3.79890850135393 4.67361085017546 5.24646269178812 0.224385134068288 0.229609428576109 0.23788743132694 0.233347580630200 0.219113144564204 0.218620939102852 0.214403755833911 0.216844263017728 0.237512661608314 0.218845014656625 0.227210734655977 0.214403755833911 0.215940433716483 0.226201916084159 0.232912331610440 0.214403755833911 0.237914184187169 0.243860731508448 0.226291810611816 3 3 - 21289063 21289580 21289329.9 21288913 21290331 - gene protein_coding_gene FALSE TRUE AT3G57480.1 zinc finger (C2H2 type, AN1-like) family protein Identical to Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13 (AtSAP13) (SAP13) [Arabidopsis Thaliana] (GB:Q9SCM4); similar to zinc finger (C2H2 type, AN1-like) family protein [Arabidopsis thaliana] (TAIR:AT2G41835.1); similar to putative zinc finger protein [Cucumis sativus] (GB:CAI30888.1); contains InterPro domain Zinc finger, AN1-type; (InterPro:IPR000058); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.143351247983392 -1.04741128949285 0.32411311605613 1 1.31042870758982 9.71011207814017 -0.143351247983392 0.172391303840017
AT2G27130_at 4.71130839951319 5.18964178319421 4.50144520125539 4.66421893778534 5.24838353633124 5.60186193691226 6.76351011870365 7.03180989581427 5.669087951113 5.87601930900072 7.13760051146408 7.02788654586139 6.7682569401667 7.00029067629922 7.26846597261624 6.44112549238254 6.75544589827105 6.09684931273338 5.47106915985038 0.238990110987685 0.233944091430031 0.245860543028569 0.239633562416258 0.232365367592768 0.240802421904156 0.232365367592768 0.233096166771564 0.236490314439111 0.236302473861878 0.232365367592768 0.233983562206159 0.232365367592768 0.247418892164284 0.233467388440561 0.232365367592768 0.242501895792465 0.232365367592768 0.248115650539898 2 2|0 +|/ 11602557 11603442 11602754.2 11602370 11603620 + gene protein_coding_gene FALSE TRUE AT2G27130.1 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein Identical to Xylogen-like protein 11 precursor (XYP11) [Arabidopsis Thaliana] (GB:Q9ZVC7;GB:Q8L963); similar to lipid binding [Arabidopsis thaliana] (TAIR:AT3G43720.2); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE89509.1); similar to Os05g0489200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055891.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) 0.109920607917177 1.04671782361417 0.324414878304246 1 1.30975998447122 11.7060469638782 0.109920607917177 0.116375866574039
AT1G53730_at 7.67012418989488 7.73917811156847 7.23122123903201 7.4757276263321 8.19830224417255 7.89056011752115 8.0301992516691 7.60685639241037 9.26557653673572 7.91589665173127 9.7536680803623 8.6479615543504 8.50584375697923 8.9092832812319 9.04750123657471 8.34231404152728 7.78274999126956 8.90649709728402 8.23286620500868 0.160790634295962 0.158788668505877 0.16466673001535 0.163945624315239 0.164473490023468 0.163733521718037 0.162258626772425 0.164493917207596 0.161973175039257 0.159949568189334 0.158898370988193 0.157870635212311 0.161548584262761 0.156112343376861 0.163063926046330 0.155588732846781 0.184683550930299 0.158034918017803 0.157844461357406 1 0|1 /|+ 20068337 20069113 20068839.556 20065369 20069381 + gene protein_coding_gene FALSE TRUE AT1G53730.1|AT1G53730.2 leucine-rich repeat transmembrane protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT4G22130.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G14350.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210)|similar to kinase [Arabidopsis thaliana] (TAIR:AT4G22130.1); similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G14350.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82074.1); similar to putative leucine-rich repeat transmembrane protein kinase [Isatis tinctoria] (GB:ABB20817.1); similar to leucine-rich repeat transmembrane protein kinase 1 [Zea mays] (GB:AAC27894.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.101447117917145 1.04603104281813 0.324713945316695 1 1.30909803670001 16.3344830687947 0.101447117917145 0.100680968144983
AT2G46820_at 12.6317533647506 12.8059624982234 12.6799629485189 12.5762614927471 12.7184918827274 12.5275628787337 13.2264340387193 13.3415602040975 13.6777566611330 13.5789365012205 13.954976505186 13.9294291091045 13.7431165615158 13.8727806907732 13.8407838823621 13.8686824806239 13.237495171702 13.8663798796154 13.4640981326607 0.0604543837894076 0.0613366511584738 0.0617616143529059 0.0636861461261537 0.0635982994148203 0.0633040296315508 0.0637383615225336 0.0668570161522066 0.0710854718899707 0.0602192238419414 0.062422521372967 0.0599259114729936 0.0599259114729936 0.0661322363529835 0.0623409811329127 0.0599259114729936 0.0741682798184621 0.0613581968270966 0.0601800162743614 2 2|0 +|/ 19250828 19251454 19251187.333 19250565 19252208 + gene protein_coding_gene FALSE TRUE AT2G46820.1|AT2G46820.2 TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) Encodes the P subunit of Photosystem I. About 25% of the TMP14 pool appeared to be phosphorylated, and this ratio is not affected by light. Contains seven phosphorylation sites on threonine residue and chloroplast targeting signal. Located in the proximity of PSI-L, -H and -O subunits. Identical to Thylakoid membrane phosphoprotein 14 kDa, chloroplast precursor (TMP14) [Arabidopsis Thaliana] (GB:Q8LCA1;GB:O81038); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G52220.1); similar to thylakoid membrane phosphoprotein 14 kda, chloroplast precursor [Medicago truncatula] (GB:ABD32715.1) -0.0801246444968085 -1.04549065130175 0.324949414933107 1 1.30857741510968 26.4948999802889 -0.0801246444968085 0.0521497100030207
AT1G75860_at 6.67679914589601 7.23104801192006 6.42392018390173 6.54926480969363 7.26993357818936 5.71103781439548 6.69106444836994 6.65823465477093 6.51503920260789 6.8256590842871 7.05513151723411 7.18197772569035 6.35177677094862 7.19553075460126 6.76535939856171 6.59067780442682 5.51658403530234 6.42392341850207 6.89830151310426 0.237499280859379 0.231842817874470 0.243750904566865 0.236821466648793 0.228673217539990 0.259051570412086 0.228767389010519 0.224429315150239 0.260494576328393 0.235764541913844 0.224429315150239 0.224429315150239 0.226771940239912 0.224429315150239 0.224429315150239 0.225948493607275 0.232478384071172 0.240003963662566 0.228153634149941 1 1|0 -|/ 28487922 28488524 28488210 28487824 28489612 - gene protein_coding_gene FALSE TRUE AT1G75860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20100.1) -0.218480278601096 -1.04324539636808 0.325929171213984 1 1.30641647405031 13.3421395533046 -0.218480278601096 0.287194466735867
AT4G00450_at 7.14951273695835 7.28566241239622 6.97886085234999 7.22217240438984 7.4946534845268 7.38890039565794 5.97379262659508 7.04637616457017 6.75081523859315 6.60110131645816 6.75732642457824 6.5348732555124 6.98901930018809 6.62437116418414 6.07950116083645 6.83131259766122 6.84736455865991 6.2405171773616 6.77582474678427 0.240107872769806 0.230970457458069 0.237459625943586 0.236483659351718 0.224672010338596 0.23305779925349 0.223754231363511 0.229144561637288 0.229197292577773 0.231441697765149 0.227944433411732 0.222751027929586 0.224000774078619 0.232009477322083 0.233425120720591 0.222751027929586 0.227222609500858 0.228809399512263 0.225560315811402 4 4 + 209928 210578 210337.5 203471 211003 + gene protein_coding_gene FALSE TRUE AT4G00450.1 CRP (CRYPTIC PRECOCIOUS) A genetic locus involved in flowering time. The mutant enhances the expression of the flowering time (FT) gene. A knockout mutant of this gene showed late-flowering phenotype. similar to 2-oxo acid dehydrogenase, lipoyl-binding site [Medicago truncatula] (GB:ABD32834.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAK43491.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAP54923.2) 0.15554970168104 1.04270918858246 0.326163491517492 1 1.30590092045227 13.7286327874229 0.15554970168104 0.192655501877507
AT1G25375_at 5.46757391639021 5.76269475052735 5.18004657396013 5.31119297858307 5.06079101795909 5.44034490707732 5.57521342706086 5.16556075650556 4.88568701499245 5.5262824663254 6.06899715972954 5.62040144998985 5.64575845138465 5.22340758345909 5.46915404374818 5.25348396817252 5.43095640373932 4.90492432933516 4.56941012351053 0.212239227021056 0.204837523124580 0.208060826316548 0.206940533980244 0.208291728376322 0.209154412488164 0.204484168147842 0.211454247685974 0.232204883229999 0.21629654584849 0.213316514662249 0.201955592602879 0.20787653792493 0.211679766575564 0.213364855098281 0.20597406996583 0.221163780642643 0.210230841501241 0.213167423980080 1 0|1 /|- 8900298 8901411 8900806.2 8900140 8903244 - gene protein_coding_gene FALSE TRUE AT1G25375.1 metallo-beta-lactamase family protein similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD52799.1); similar to Os01g0133500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041939.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.106837689429614 1.04194483602043 0.326497734491718 1 1.305166355903 10.5933916036601 0.106837689429614 0.111639996909123
AT1G09850_at 7.45690863061348 7.83884067024757 7.18075407548987 7.45912704846238 7.43617407920568 6.88963516382768 7.69421868624866 7.63559962887569 5.64030584115794 6.75322404581722 6.33191746480412 6.85454256774752 6.84762655396086 6.55655320795877 7.35322103415812 6.71804128099994 6.59652000756699 7.2769021927607 6.12553192771987 0.192289476412863 0.184648207198486 0.187060565268185 0.185052727016030 0.185012327237116 0.190103453804821 0.193348608875706 0.190488672433652 0.203631668335861 0.190924252630500 0.195567132660577 0.182336579712708 0.190182534609375 0.204627746546742 0.185347038758306 0.181150368840260 0.200821637946177 0.189637700035072 0.191417804357314 1 1 + 3203115 3203799 3203513.091 3201801 3204152 + gene protein_coding_gene FALSE TRUE AT1G09850.1 XBCP3 (XYLEM BARK CYSTEINE PEPTIDASE 3); cysteine-type peptidase Arabidopsis thaliana papain-like cysteine peptidase similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to cysteine protease [Hevea brasiliensis] (GB:ABG33750.1); similar to Os05g0508300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055994.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Granulin; (InterPro:IPR000118) 0.114462810798167 1.04172899123271 0.326592168825089 1 1.30495899657419 13.9438753196929 0.114462810798167 0.125450257938243
AT1G48450_at 10.0960884704427 10.1186685102637 10.1657937299198 10.1509523908654 10.2805592428861 10.1665556442595 10.3631112081517 10.4807778657287 10.6911002729654 10.7539063276767 10.7802553319376 10.4866623190032 10.5442627036950 10.6364345399379 10.8458881902038 10.6637134414209 10.3744742539599 10.6053919366528 10.6259440160912 0.071328917408203 0.0682525976367598 0.0696207051189973 0.0699782779898468 0.071632693515833 0.0729983068634517 0.0705189354355461 0.0677287394056336 0.0792800853257142 0.0696466156334592 0.0682484321599074 0.0693079784227709 0.0718102239330364 0.0708729221556407 0.0679341823230997 0.0684001483995488 0.0696751409460342 0.0718942842792305 0.0694823290872059 1 1 - 17912419 17912987 17912680 17912171 17914118 - gene protein_coding_gene FALSE TRUE AT1G48450.1|AT1G48450.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17800.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO38836.1); similar to Os03g0717900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051084.1); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) -0.073438897153518 -1.04155395536684 0.326668764284860 1 1.30479086567953 20.8815394887376 -0.073438897153518 0.0287356142906824
ATCG00600_at 8.97527232537317 9.97895834957614 9.72805310017623 10.2667944023015 9.7518483736692 9.11729222994795 9.8304968690326 10.1097893054176 10.1880378956925 10.3680438890497 10.2239887242305 10.8380722379223 9.93747011639732 10.3394017250045 8.84525399126773 10.6087088445956 9.22346624168078 10.1877257393277 10.5783214605571 0.162276645121885 0.165879848169765 0.168266890493947 0.166665010630196 0.169256212701672 0.183442655644286 0.164144891184526 0.168475823796398 0.172596774207847 0.168159905377789 0.162458832970099 0.165405644758777 0.160773293732399 0.181395441101495 0.180991555064858 0.161549841563716 0.179643405434645 0.187379743746959 0.165060722886938 C C + 66012 66087 66050.636 65998 66111 + gene protein_coding_gene FALSE TRUE ATCG00600.1 Cytochrome b6-f complex, subunit V. Disruption of homologous gene in Chlamydomonas results in disruption of cytochrome b6-f complex. Identical to Cytochrome b6-f complex subunit 5 (Cytochrome b6-f complex subunit V) (Cytochrome b6-f complex subunit petG) (petG) [Arabidopsis Thaliana] (GB:P56775); similar to cytochrome b6/f complex subunit V [Nuphar advena] (GB:AAZ03999.1); similar to cytochrome b6/f complex subunit V [Nicotiana tabacum] (GB:NP_054520.1); similar to cytochrome b6/f complex subunit V [Oryza sativa (indica cultivar-group)] (GB:YP_654227.1); contains InterPro domain Cytochrome b6/f complex, subunit 5; (InterPro:IPR003683) -0.180127824186316 -1.04099925025386 0.326911593931961 1 1.30425818406062 19.9216358032633 -0.180127824186316 0.230773023234379
AT3G66658_at 5.6553624793336 5.98337985454101 5.50617402775034 5.40721934215898 5.74435803633872 5.32764688785306 6.05337186347343 5.92952015952707 5.48137494402549 5.35922230125816 5.4236154409943 5.79606959356423 5.46425150004622 5.58002505192307 5.91818348604144 5.55144573925975 5.22365632103268 5.57093597282756 5.22072288406482 0.206317376515642 0.200508682435167 0.198705417966914 0.204679571463792 0.197889029331504 0.203115063417111 0.197889029331504 0.19853244599485 0.201800548393355 0.210988410513754 0.198449875971327 0.197889029331504 0.202086190110453 0.198598909365332 0.198731389684143 0.201537346652524 0.21601260683212 0.197889029331504 0.201468059815301 3 3|0 -|/ 2095381 2096247 2095755.3 2095111 2099157 - gene protein_coding_gene FALSE TRUE AT3G66658.1|AT3G66658.2 ALDH22a1 (ALDEHYDE DEHYDROGENASE 22A1); 3-chloroallyl aldehyde dehydrogenase Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 22A1 precursor (EC 1.2.1.3) (Novel aldehyde dehydrogenase family 22 member A1) (ALDH22A1) [Arabidopsis Thaliana] (GB:Q0WSF1;GB:Q70E95;GB:Q9C837); similar to ALDH10A8 (Aldehyde dehydrogenase 10A8), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G74920.1); similar to Os07g0688800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060704.1); similar to Aldehyde dehydrogenase (ISS) [Ostreococcus tauri] (GB:CAL55273.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086)|Identical to Aldehyde dehydrogenase 22A1 precursor (EC 1.2.1.3) (Novel aldehyde dehydrogenase family 22 member A1) (ALDH22A1) [Arabidopsis Thaliana] (GB:Q0WSF1;GB:Q70E95;GB:Q9C837); similar to ALDH10A8 (Aldehyde dehydrogenase 10A8), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G74920.1); similar to Os07g0688800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060704.1); similar to aldehyde dehydrogenase [Trypanosoma brucei TREU927] (GB:XP_825447.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.0984047519659186 -1.04029571902453 0.327219774199512 1 1.30358289361846 11.1607772137023 -0.0984047519659186 0.0957877267648777
AT4G08460_at 6.57633322479798 6.21195927433322 6.2793570562212 6.08027458451951 6.59406723987452 6.4402744667652 6.09882541535065 5.79433433010467 6.52778972008684 5.68081983854519 6.21880883475805 6.16952573475543 6.1177342019245 6.19939033625031 6.17198136679068 6.32964948056506 6.28124345059395 6.10170596098081 6.34072371219245 0.157335382305815 0.153281183532431 0.152554482966923 0.160271774027321 0.150306938065125 0.162288977202755 0.156870609603855 0.156961353467372 0.156484390986002 0.156278185318763 0.150306938065125 0.153012041171300 0.158698390878677 0.155267685625050 0.157675737667240 0.162676704484933 0.160308797940557 0.158622990866597 0.159109837849863 4 4 - 5377403 5377941 5377668.545 5377120 5380615 - gene protein_coding_gene FALSE TRUE AT4G08460.1|AT4G08460.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G77770.2); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) 0.0968870531255046 1.03893219469097 0.327817699849721 1 1.30227508591636 12.4503612045470 0.0968870531255046 0.0929948238684337
AT4G13460_at 7.09371669871718 7.28833925473484 7.44125510385206 7.30326324833478 7.51170572109416 7.64779973973377 7.78910796890874 7.64821089432904 6.7669834736415 7.20297928709606 6.92241524642928 6.78025884372904 7.0785512737968 7.07850154790579 6.97054372642381 7.05252659880732 7.67313726219942 7.00747077946509 6.82478383608994 0.157528360947678 0.153229316735684 0.15995565468725 0.154777834047875 0.152440726335182 0.156540529051044 0.156464774415619 0.160898055194113 0.156956231411605 0.156834191386277 0.160603354588092 0.161253141768833 0.158928049064203 0.161069775816164 0.156578759934837 0.156812776222479 0.161135341821414 0.160071619687477 0.171739016800406 4 4 - 7824691 7825166 7824908.727 7824030 7827000 - gene protein_coding_gene FALSE TRUE AT4G13460.1|AT4G13460.2 SUVH9 (SU(VAR)3-9 HOMOLOG 9); histone-lysine N-methyltransferase/ zinc ion binding Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and this subfamily of the SET proteins have an additional conserved RING finger motif called YDG domain. Identical to Probable histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH9 (EC 2.1.1.43) (Histone H3-K9 methyltransferase 9) (H3-K9-HMTase 9) (Suppressor of variegation 3-9 homolog protein 9) (Su(var)3-9 homolog protein 9) (Protein SET DOMAIN GROUP 22) (SUVH9) [Arabidopsis Thaliana] (GB:Q9T0G7); similar to SUVH2 (SU(VAR)3-9 HOMOLOG 2) [Arabidopsis thaliana] (TAIR:AT2G33290.1); similar to Os07g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059503.1); similar to Os08g0565700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062536.1); similar to SRA-YDG; SET-related re (GB:ABE79848.1); contains InterPro domain SRA-YDG; (InterPro:IPR003105); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Pre-SET; (InterPro:IPR007728); contains InterPro domain Nuclear protein Zn2+-binding; (InterPro:IPR003606) 0.0800028549916558 1.03826618450992 0.328110060717374 1 1.30163676203336 14.4664287581066 0.0800028549916558 0.0534212933244931
AT1G55840_at 10.1722792278080 9.93217941743137 9.96615690684236 9.92168544416515 9.9880723980815 9.87364217767857 9.89973084805606 9.90640246497215 9.4306803140346 9.80261941004398 9.78698838360974 9.79350919194283 9.71303758696968 9.77189464325116 9.88227521235053 9.86735804928558 9.8548589616172 9.94456461660962 9.6598670780424 0.0905276134226587 0.088932800919604 0.0876977892558975 0.0860562203895263 0.0904992239929246 0.0902320850941316 0.0884328255794855 0.0907570504398115 0.107308417758043 0.0877885866818525 0.0855805406152777 0.0859444075144371 0.0895513324624697 0.0899705801711341 0.0855805406152777 0.0881646273936228 0.0895478818143695 0.0890515089250788 0.0899748707566835 1 0|1 /|+ 20878953 20879600 20879399.4 20877268 20879938 + gene protein_coding_gene FALSE TRUE AT1G55840.1|AT1G55840.2 SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein similar to SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47730.1); similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABD28586.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.0777482360612693 1.03746866821986 0.328460413181125 1 1.30087280636764 19.6864518263352 0.0777482360612693 0.046681288105177
AT1G63170_at 6.35336449383922 6.41503885397256 6.15736672035754 5.99034573018575 6.78434672641733 5.78068350769647 7.11093484029948 6.52839514758943 6.13958825186961 6.16313911225681 6.27776014286457 6.8527413579727 6.42600586915081 6.45818849829849 6.60576832060006 6.11027951166514 5.94964992152904 6.29555449224957 6.51075059890978 0.218759964549007 0.207549385970007 0.227955252373057 0.222244214478339 0.207512113316542 0.222783221715885 0.205930889750615 0.221502587489114 0.233537586896315 0.216783682009034 0.212564787907281 0.208379685280075 0.220676357045629 0.218740087153283 0.219728029767928 0.205930889750615 0.232353068932999 0.225419898315240 0.218217675281847 1 1|0 +|/ 23429957 23430624 23430271.625 23429017 23430974 + gene protein_coding_gene FALSE TRUE AT1G63170.1 zinc finger (C3HC4-type RING finger) family protein Identical to Ubiquitin-protein ligase At1g63170 (EC 6.3.2.-) (RING finger protein At1g63170) [Arabidopsis Thaliana] (GB:Q8LDB8;GB:Q93Z65;GB:Q9CAM6); similar to protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G12760.1); similar to ring zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29468.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.161456734740833 -1.03708745572401 0.328627983141787 1 1.30050779282009 12.7116359201964 -0.161456734740833 0.203174731172367
AT3G46460_at 7.95436467526455 8.04226032681339 8.1920755787671 8.00916409649511 8.53071196240107 7.96647781058362 8.81971633575877 8.39893495944651 8.2276671032674 7.86744849656258 8.32506809968626 8.17142017018526 8.33959250844133 8.5270523337301 8.04729754310961 8.23184307469439 8.06733818835714 8.26224109227241 7.56859102139942 0.129656499812391 0.130522100806034 0.130691100204457 0.141797009757829 0.127584105314664 0.139204616067361 0.132122885337726 0.134342719313227 0.141396635516420 0.141845804122903 0.137888985884441 0.131590255262738 0.131158230363342 0.131330754794949 0.145493409867478 0.132281114265215 0.133781263576255 0.130071564775898 0.141177785122188 3 3|0 -|/ 17107323 17108275 17107740 17106865 17108437 - gene protein_coding_gene FALSE TRUE AT3G46460.1 UBC13 (ubiquitin-conjugating enzyme 13); ubiquitin-protein ligase Identical to Ubiquitin-conjugating enzyme E2 13 (EC 6.3.2.19) (Ubiquitin-protein ligase 13) (Ubiquitin carrier protein 13) (UBC13) [Arabidopsis Thaliana] (GB:Q42541); similar to UBC14 (ubiquitin-conjugating enzyme 14), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G55380.1); similar to ubiquitin-conjugating enzyme [Arachis hypogaea] (GB:ABI84264.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.114683853487006 1.03696731563549 0.328680806863545 1 1.30039277892118 16.3064051348843 0.114683853487006 0.126767638353193
AT1G15740_at 10.4953064669584 10.5134494882842 10.6783818035011 10.6683660271335 11.2847043069754 11.0341372874122 10.3550866364831 10.0571891032939 10.3301967829249 10.3313261861192 10.0126417914531 9.64132623157547 10.1966209512634 9.98354243744117 9.48856982894644 10.0388124113512 10.2127832539132 10.0797311030715 10.3818993782227 0.0933991386671364 0.0943387231294667 0.0976089186796065 0.0944552607742277 0.0940134810751908 0.0961623511425363 0.0926706829768413 0.0936293043932691 0.0998122556746407 0.091726244811321 0.0939128463078735 0.0918267518194897 0.0927813865882271 0.0931928360690357 0.101306042612877 0.0900021545627201 0.100901332296350 0.097847097202318 0.0901743213243573 1 1|0 +|/ 5413632 5414497 5414109.3 5410907 5414914 + gene protein_coding_gene FALSE TRUE AT1G15740.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G23840.1); similar to Leucine-rich repeat; Leucine-rich repeat, ribonuclease inhibitor subtype; Leucine-rich repeat, cysteine-containing subtype [Medicago truncatula] (GB:ABE93295.1); similar to OSIGBa0112M24.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67587.1); similar to Os04g0503500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053240.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.0850427422693052 1.03545248190657 0.329347415845531 1 1.29894344678625 20.7881081151132 0.0850427422693052 0.0674594197188184
AT1G03330_at 9.23088981067914 9.14918466728065 9.22306778489172 9.31596529598205 9.67481474256292 9.2335505242137 9.38274199710158 9.30352477048691 9.11680546087616 8.68737977866474 9.0634805852817 9.06568459250877 9.159428031355 9.17604604477514 8.97941074825132 9.16794561389585 8.74069304159611 8.88683608026145 9.02790789300023 0.132621927792433 0.126576507600685 0.125393318542128 0.123780849064667 0.124561393399372 0.136061643432125 0.117667062371795 0.124662672185183 0.136168343182251 0.124947029587104 0.126922534502278 0.122940374768268 0.124985059906789 0.117877378785564 0.130942391327631 0.120075358937660 0.126808055246867 0.117667062371795 0.117667062371795 1 1|0 -|/ 818182 819055 818591.3 817983 819563 - gene protein_coding_gene FALSE TRUE AT1G03330.1 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative similar to putative snRNP core protein SMX5d [Oryza sativa (japonica cultivar-group)] (GB:BAC99422.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.0905869117929117 1.03481527018814 0.329628133811769 1 1.29833426795762 18.3012032673603 0.0905869117929117 0.080483472524431
AT4G38640_at 7.1011023496566 7.18531155259543 7.1050529728344 7.43158030686 7.16887248266353 7.58770306269591 6.92808179572785 7.37660267547565 6.95209803780366 7.11840665457523 7.1679077704327 7.24261214066323 7.35109414094938 7.28016002949122 7.10961017149082 7.23710785053331 7.08685109310278 7.000512807122 7.34249377541843 0.174065689152213 0.173798385338787 0.177743850394160 0.180076173713302 0.176565604247368 0.170525752774919 0.160395894342221 0.170325946035384 0.177061482724557 0.167054554853294 0.166697941355621 0.172012492195999 0.166058576505172 0.168585793407546 0.168252983014297 0.160939776192046 0.172458523328800 0.174842515158126 0.169340038725852 4 4|0 -|/ 18059897 18060501 18060222.778 18059647 18062283 - gene protein_coding_gene FALSE TRUE AT4G38640.1 choline transporter-related similar to choline transporter-related [Arabidopsis thaliana] (TAIR:AT1G25500.2); similar to Choline transporter-like protein (ISS) [Ostreococcus tauri] (GB:CAL55455.1); contains InterPro domain Protein of unknown function DUF580; (InterPro:IPR007603); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) 0.111171728720161 1.03349451985773 0.330210563911488 1 1.29707252704392 14.3966124780165 0.111171728720161 0.121175505753714
AT4G00720_at 9.12159452558232 9.13160805138975 9.28090109703777 9.14727950451532 9.54841931240733 9.51956749147404 9.4930037031323 9.60257224924314 9.51531167133905 9.27875502405323 9.7487490807784 9.33126487776271 9.69001967538734 9.4924078279836 9.28318613253211 9.41906356216233 9.58045914533253 9.11716071647632 9.25145181486331 0.0877284500960308 0.0871011780956555 0.0902386952724249 0.0912940177126664 0.0889806065656344 0.0905984395637077 0.0873048901925864 0.0910984375905042 0.0922648921902179 0.096025721287276 0.0913963461319082 0.0884898790380738 0.0892790266258612 0.0962478453921793 0.0887193651151867 0.0893281441245453 0.0935986552855789 0.090512828746141 0.092322386950202 4 4|0 -|/ 294145 295226 294672.222 293641 297314 - gene protein_coding_gene FALSE TRUE AT4G00720.1 shaggy-related protein kinase theta / ASK-theta (ASK8) Identical to Shaggy-related protein kinase theta (EC 2.7.11.1) (ASK-theta) (ASK8) [Arabidopsis Thaliana] (GB:Q96287;GB:P93731); similar to ATSK11 (Arabidopsis thaliana SHAGGY-related kinase 11), protein kinase [Arabidopsis thaliana] (TAIR:AT5G26751.1); similar to shaggy-related protein kinase beta / ASK-beta (ASK2) [Arabidopsis thaliana] (TAIR:AT3G61160.2); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to Shaggy-related protein kinase theta (ASK-theta) (GB:O04160); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95891.1); similar to NSK6; Shaggy-like kinase 6 [Nicotiana tabacum] (GB:CAA69899.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.073064963119226 1.03149688788009 0.331092988980021 1 1.29516647043573 18.7587657655413 0.073064963119226 0.0303673681850324
AT3G60510_at 5.28302582803359 4.60483730399664 4.71494613490237 4.50401057058256 5.4900164935153 5.50151422005811 5.38124895429818 4.77208271950901 4.3248142737925 4.30427311690834 4.41196690298269 5.0366343104293 4.45144237521986 4.82037738321586 4.6077350737595 4.63589196950513 4.81361859654092 4.3733827503499 4.62114214914938 0.226075843038659 0.231359930720192 0.225486066366074 0.227349600528248 0.235566626165134 0.239907213950481 0.238632179659191 0.223955491940916 0.225763955207975 0.229170766749381 0.230112473230624 0.223955491940916 0.237260516616453 0.226963274853281 0.231114082991693 0.225735098709133 0.235569351726216 0.244367310591482 0.22752111619883 3 3|0 -|/ 22368130 22369034 22368621.375 22367927 22371122 - gene protein_coding_gene FALSE TRUE AT3G60510.1|AT3G60510.2 enoyl-CoA hydratase/isomerase family protein|catalytic similar to enoyl-CoA hydratase/isomerase family protein [Arabidopsis thaliana] (TAIR:AT4G31810.1); similar to putative enoyl-CoA-hydratase [Oryza sativa (japonica cultivar-group)] (GB:AAG13484.1); similar to Enoyl-CoA hydratase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47969.1); similar to Os10g0552900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065335.1); contains InterPro domain Enoyl-CoA hydratase/isomerase; (InterPro:IPR001753) 0.134730571802775 1.03130783643143 0.331176593351608 1 1.29498623052457 9.5617724532122 0.134730571802775 0.161937854883198
AT2G07180_at 9.07449584333533 9.08358538492125 8.70113719486636 8.80302297026173 9.14868701769783 8.55291829141786 8.01848838201962 7.1843657747398 8.77070155991207 8.11529891981956 8.4257211946865 8.41813544992438 8.06955751365266 8.54193139237587 7.91468819524487 8.45760744062828 8.27047173369448 8.19759738841694 8.49073978290982 0.140804858562123 0.142301908211940 0.146986399963454 0.140372256512536 0.136678411165112 0.150011539290126 0.143071206957891 0.168890463126501 0.149495686621588 0.146333292539176 0.136160957517549 0.139029252570513 0.14661555026331 0.143388545182002 0.142020396019006 0.136762415134634 0.140553604312325 0.147148858864827 0.136160957517549 2 2 - 2981097 2981793 2981417.273 2980896 2983486 - gene protein_coding_gene FALSE TRUE AT2G07180.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G01020.1); similar to Protein kinase APK1B, chloroplast precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95681.1); similar to Os11g0121400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065612.1); similar to Os06g0663200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058289.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.144628945002227 1.03010424006794 0.331709240459894 1 1.29383932147270 16.9437762121367 0.144628945002227 0.178268499559397
AT1G48030_at 11.3353907630606 11.3509394730658 11.4879961032271 11.4802675961482 11.4400436555245 11.3298439334113 11.7710910752562 11.8953237523294 11.5648338299681 11.9766622589237 11.6383845930989 11.7009541583998 11.6236778419122 11.6187516814912 12.0659299725368 12.2035557029716 11.8224604507852 11.9147830239540 11.9040855095004 0.0635842608859038 0.0636998710917938 0.0642016097501798 0.0631507128267183 0.0632699385676803 0.066722589255295 0.064272587325102 0.0640155631325194 0.0680964097472873 0.062279809052831 0.0632330914331895 0.0628333797040297 0.0640601601600006 0.0627161750683211 0.0628342109519856 0.0625423136094052 0.0645199920186824 0.0649836457462035 0.0627026479185564 1 1 - 17721106 17721663 17721380.273 17720802 17722810 - gene protein_coding_gene FALSE TRUE AT1G48030.1|AT1G48030.2 dihydrolipoamide dehydrogenase 1, mitochondrial / lipoamide dehydrogenase 1 (MTLPD1) Identical to Dihydrolipoyl dehydrogenase 1, mitochondrial precursor (EC 1.8.1.4) (Dihydrolipoamide dehydrogenase 1) (Pyruvate dehydrogenase complex E3 subunit 1) (PDC-E3 1) (E3-1) (Glycine cleavage system L protein 1) (LPD1) [Arabidopsis Thaliana] (GB:Q9M5K3;GB:Q9LNF3); similar to LPD2 (LIPOAMIDE DEHYDROGENASE 2), FAD binding / dihydrolipoyl dehydrogenase/ disulfide oxidoreductase/ oxidoreductase [Arabidopsis thaliana] (TAIR:AT3G17240.3); similar to Dihydrolipoyl dehydrogenase, mitochondrial precursor (Dihydrolipoamide dehydrogenase) (Pyruvate dehydrogenase complex E3 subunit) (PDC-E3) (E3) (Glycine cleavage system L protein) (GB:P31023); similar to dihydrolipoamide dehydrogenase precursor [Bruguiera gymnorrhiza] (GB:BAB44156.1); similar to dihydrolipoamide dehydrogenase precursor [Lycopersicon esculentum] (GB:AAN23154.1); contains InterPro domain Dihydrolipoamide dehydrogenase; (InterPro:IPR006258); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Mercuric reductase; (InterPro:IPR000815); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I, active site; (InterPro:IPR012999); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase dimerisation region; (InterPro:IPR004099); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.0726400659186219 -1.02977132181532 0.331856688103475 1 1.29352226281658 23.3307400661401 -0.0726400659186219 0.0288950657925374
AT2G39705_at 5.75283349333209 6.19233503228177 5.68892330033621 6.00438363241028 6.60914539522652 6.08074815315507 5.23326398530546 5.37748108361822 5.34627681835021 6.21534318567376 5.15010140525285 5.98426590393423 5.81850902201251 5.03781165320420 5.60131012271882 6.68579856104621 6.2109504991992 5.25156977093774 6.25687913438416 0.187916921815883 0.207919500889168 0.188826711411909 0.195029203235646 0.191044449453895 0.210400211303778 0.194856407489190 0.188857930618577 0.198915600458045 0.191789916465333 0.191848715895253 0.189880180979761 0.193539083871864 0.193058464900385 0.190021572856339 0.191698919929071 0.200056894882200 0.195836072931440 0.197479972992090 2 2 + 16564128 16564354 16564249.364 16563934 16564655 + gene protein_coding_gene FALSE TRUE AT2G39705.1 DVL11/RTFL8 (ROTUNDIFOLIA LIKE 8) similar to DVL8/RTFL7 (ROTUNDIFOLIA LIKE 7) [Arabidopsis thaliana] (TAIR:AT3G55515.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83577.1); contains InterPro domain DVL; (InterPro:IPR012552) 0.117430813066572 1.02870389457176 0.332329784465619 1 1.29250621131482 11.6959089245037 0.117430813066572 0.133227258929016
AT3G62370_at 7.87238238524662 7.69324542092277 7.19085144167307 7.28597096314135 6.80693620043595 6.99102462461692 6.49649457232388 5.86479809886797 7.44249075750413 6.46930744265742 7.06139800618362 6.86276015229273 6.34350119952871 6.79430683597029 7.11442753994949 6.10978097633835 6.19064647475089 6.79950223319155 6.98486748042686 0.192156049436669 0.188732808297803 0.194657319356137 0.190608912736173 0.203216225505389 0.194791823813995 0.192528961484339 0.191605967854221 0.20302132778535 0.192298644459330 0.199351914916937 0.188732808297803 0.198032397725319 0.20024090237259 0.194902491415994 0.190229503899764 0.196431496749784 0.200546677532679 0.188732808297803 3 3|0 +|/ 23092939 23094097 23093714.333 23091734 23094257 + gene protein_coding_gene FALSE TRUE AT3G62370.1 similar to Os03g0309000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049909.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95557.1) -0.109524555730295 -1.02852433313236 0.332409418970109 1 1.29233537100053 13.8377607904728 -0.109524555730295 0.119152472733033
AT1G35470_at 7.33651045834122 7.6127205681881 7.56324318098178 7.77562936245707 7.84674399872264 7.6268349318552 7.51434686871398 7.86869119113005 6.92562230703798 7.05154060116506 6.96887170806862 7.31018202372417 7.06065938815062 6.67171734971952 7.26487740586744 7.26853243352762 6.84414759634564 7.14362751414829 7.0041242159209 0.225217455383140 0.212294299937549 0.22812670769159 0.213871788781043 0.216288792188347 0.223210032837161 0.223772251317245 0.227572995953904 0.242577307313864 0.219608096719029 0.214510551293666 0.212169618000719 0.217709512609905 0.224121194723482 0.220193389086573 0.213525221040036 0.238647874143177 0.223957136552525 0.213805455103516 1 1|0 -|/ 13051625 13052921 13052043.9 13051388 13054992 - gene protein_coding_gene FALSE TRUE AT1G35470.1|AT1G35470.2 SPla/RYanodine receptor (SPRY) domain-containing protein similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09340.1); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain CT11-RanBPM; (InterPro:IPR013144); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877)|similar to SPla/RYanodine receptor (SPRY) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G09340.1); similar to ranBPM-like [Oryza sativa (japonica cultivar-group)] (GB:BAD15463.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain SPla/RYanodine receptor SPRY; (InterPro:IPR003877) 0.096430074823424 1.02852223509647 0.332410349523816 1 1.29233337499830 14.6732597211247 0.096430074823424 0.0940436765619707
AT3G08010_at 9.69970943136622 9.84609790119084 9.58750965361915 9.61212309807809 9.93480512632095 9.59790519439127 10.1436079954345 10.1144040775807 9.56326942328048 9.79388124721073 9.88471365293998 9.78058793756773 9.639837121405 9.83652257491835 9.68821042002853 9.95205822762265 9.72955441246187 9.61297335595626 9.6343134812769 0.115363753750564 0.114327274300223 0.121784812690262 0.113447824491241 0.111107849998154 0.117764336424677 0.115002996840304 0.120911023534615 0.120500970081944 0.111368001649251 0.111107849998154 0.115197958314226 0.118424330451256 0.114982084148256 0.115361756835695 0.111107849998154 0.124910543463604 0.114368271383706 0.112065514198379 3 0|3 /|+ 2556792 2557398 2557081.222 2555977 2557511 + gene protein_coding_gene FALSE TRUE AT3G08010.1 ATAB2; RNA binding Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the biogenesis of Photosystem I and II. ATAB2 has A/U-rich RNA-binding activity and presumably functions as an activator of translation with targets at PS I and PS II. similar to Tab2 protein [Chlamydomonas reinhardtii] (GB:CAE17328.1); similar to Os02g0610800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047402.1); contains InterPro domain Protein of unknown function DUF1092; (InterPro:IPR009472) -0.0830666271754308 -1.02845809953707 0.332438796893593 1 1.29227236003471 19.5317096081403 -0.0830666271754308 0.06391080912887
AT1G16040_at 6.10983276441815 6.31480643782922 6.438906777046 6.33600542640619 6.62431897632565 5.85428187017648 6.24953301530972 5.20599896521639 4.81503276842856 4.5102760343169 4.57969699024091 4.61770588759459 4.83240405545008 4.87313300373903 4.25158209693941 4.8633101781175 4.97805792353506 4.69047206830369 4.78080385454875 0.191374089319476 0.189630185512626 0.197477057117482 0.194215550657902 0.186429425320953 0.191609671603873 0.19090476669074 0.193019719941185 0.198452620515199 0.188616653865488 0.189777102879751 0.185889435325205 0.183706210268142 0.187772829922579 0.186772807589700 0.183706210268142 0.195782637674606 0.192724532451625 0.186413992990277 1 1 + 5504766 5506341 5505264.2 5504729 5506605 + gene protein_coding_gene FALSE TRUE AT1G16040.1 similar to phosphatidylinositol glycan synthesis class F protein [Oryza sativa (japonica cultivar-group)] (GB:ABH07430.1); similar to Os03g0129000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048844.1); contains InterPro domain Phospho-ethanolamine N-methyltransferase; (InterPro:IPR009580) 0.176046594926919 1.02818818245697 0.332558539234225 1 1.29201560783608 10.8481269430517 0.176046594926919 0.227915249251103
AT1G10030_at 4.25129333688139 4.78127251168033 3.56876581632709 3.72080056990047 4.58521698652399 4.31552517659321 4.97943721018784 5.47076134647364 5.05870783802944 4.85317186068018 5.91810542066625 6.2327018093406 4.92526427859338 5.71077664585166 6.10596461766825 5.67924724188494 4.60916332381096 5.51133877242295 5.09198651877267 0.288603792434541 0.287813552240848 0.288259071252385 0.286246653934938 0.285910050227777 0.298089396197021 0.290336468592915 0.286964504703132 0.295521708378162 0.286408240645428 0.291020264309844 0.285801674304255 0.288822767121364 0.290210874780708 0.290874722106733 0.286543938785194 0.297600244089603 0.292404288869255 0.291214638990172 1 1|0 +|/ 3274003 3275605 3274981 3273827 3275839 + gene protein_coding_gene FALSE TRUE AT1G10030.1 ERG28 (ARABIDOPSIS HOMOLOG OF YEAST ERGOSTEROL28) Identical to Probable ergosterol biosynthetic protein 28 [Arabidopsis Thaliana] (GB:O80594); similar to Protein of unknown function UPF0143 [Medicago truncatula] (GB:ABE93132.1); similar to Os12g0633200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067350.1); contains InterPro domain Erg28-like; (InterPro:IPR005352) -0.11891621967525 -1.02750622040019 0.332861222780026 1 1.29136713614681 9.7530636207913 -0.11891621967525 0.136057241988410
AT1G01260_at 5.02234331839662 5.52147505923501 4.77619985386250 5.06101382165834 4.98934419493429 4.97817491350045 4.73416465682849 4.94082614948103 5.54276197920301 4.9310954029155 5.62586055176428 5.13664717533714 4.94904603906274 5.25708557786332 5.16873833523209 5.02729110958005 4.6875638405885 4.76297260847213 5.05910274988515 0.19583284007548 0.191573805283903 0.191130442698741 0.191425198966782 0.195877206590008 0.206715657277053 0.191130442698741 0.192067383989185 0.194511284891151 0.194365646998919 0.198840163535889 0.191600036407754 0.192778504904975 0.193935546982473 0.194320202389788 0.197220806442240 0.208480336043241 0.204598715012246 0.193818911683330 1 1 + 110800 111296 111004.909 109032 111609 + gene protein_coding_gene FALSE TRUE AT1G01260.1|AT1G01260.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT2G46510.1); similar to Os01g0235700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042524.1); similar to bHLH protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD81265.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.102135911296709 -1.02654177333551 0.333289645170057 1 1.29045061114186 10.1302197620231 -0.102135911296709 0.105703003595110
AT3G49430_at 6.96267527045104 6.90762937224959 7.04882487171558 6.73539173274041 6.42466851190563 6.79800480824542 6.71414945472531 7.11450017393576 6.34958984179407 6.10625847908463 6.11236372606338 6.08025702860038 6.37325490269357 6.50883397117728 6.79168656588055 6.46809781938753 6.40549514502895 5.76455992863296 6.5892162104878 0.191375366272589 0.182535693797935 0.182249793057821 0.189878995905419 0.180227627788863 0.189635048302846 0.200691444533351 0.185109099221663 0.191527221630579 0.185053889119043 0.182767008969281 0.187913926778131 0.192236167000223 0.187408013964958 0.18212671486193 0.185778515147744 0.187993045355949 0.191908787991190 0.180613540878839 3 3|0 +|/ 18344023 18345309 18344607 18342531 18346024 + gene protein_coding_gene FALSE TRUE AT3G49430.1|AT3G49430.2 SRP34A (SER/ARG-RICH PROTEIN 34A); RNA binding|SRP34A (SER/ARG-RICH PROTEIN 34A) similar to SR1 (splicing factor 2), RNA binding [Arabidopsis thaliana] (TAIR:AT1G02840.3); similar to pre-mRNA splicing factor-like protein [Solanum tuberosum] (GB:ABA46766.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.104151147272212 -1.02640992274168 0.333348248038494 1 1.29032536295111 13.1689422643570 -0.104151147272212 0.109576687004765
AT1G73490_at 8.51293764294597 8.47861860223896 8.89351999992333 8.56267356185435 8.6918034473393 8.1281079572571 8.43037152961278 8.37948506475415 8.24605399361101 7.96373962969065 7.9543925090364 8.59935783132005 8.03283293307111 8.20875243384125 8.5248601439398 8.38222068278958 8.08058492430883 7.87152764313774 8.12906161908004 0.170459238819729 0.164198573247806 0.182928428629864 0.166742087573625 0.171770974396401 0.161348217322445 0.165672200108420 0.163996760029821 0.167970984491318 0.169169265055371 0.170726089101889 0.160303595351128 0.168215043686545 0.171741882545619 0.170229313745622 0.165216023233510 0.175230107335183 0.172748720810210 0.161040374839709 1 1 - 27637159 27637860 27637464.818 27636926 27638593 - gene protein_coding_gene FALSE TRUE AT1G73490.1 RNA recognition motif (RRM)-containing protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT5G51730.1); similar to Os04g0620700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053909.1); similar to H0714H04.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66982.1); similar to Os08g0192900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061178.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.106268710962791 1.02614148098597 0.333467585161960 1 1.2900704012569 16.6695736683113 0.106268710962791 0.113608666773937
AT2G45060_at 5.19768028046597 4.98468978152737 5.09568125337031 5.46820750224627 5.131211513882 4.53014366516 5.53707090149204 5.59374062751374 4.15977353039353 4.64610211732119 5.21679282431152 5.08597338038817 4.85809122321596 5.00512758908249 5.04994728440278 4.71332528107768 4.33578777797427 4.18408633480607 4.11092035203816 0.233768505074616 0.235604473957776 0.231948642311138 0.234340589965398 0.233369643377608 0.228828475203372 0.237554459130930 0.244587373236524 0.241900282738347 0.232438409112758 0.234983778026359 0.240468843512646 0.23019061670972 0.226692530614073 0.226852721583555 0.227730142805046 0.247865815875502 0.243517463570829 0.234085754509338 2 2|0 -|/ 18591752 18593502 18592785.625 18591427 18593851 - gene protein_coding_gene FALSE TRUE AT2G45060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G26410.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90926.1); similar to Os02g0104800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045615.1) 0.114279190618971 1.02613324792849 0.333471245725491 1 1.29006258243325 9.74817325495304 0.114279190618971 0.128181389182472
AT1G47710_at 9.27430456635572 9.4337658093995 8.7734236075964 8.66180402731786 8.79958448635591 8.65481720413479 8.52369716601207 8.73969630689719 6.77084154044594 7.35743207747352 7.54700530176683 7.55330900571888 7.1732791696108 7.50841692069169 7.61535333254896 7.29725678392014 7.21337542104023 7.58213219155538 6.88902668752785 0.217836448663127 0.220776197669744 0.215531190361889 0.219565050605755 0.220960602238630 0.215531190361889 0.222318861558063 0.222594697270734 0.223872225738971 0.219455957454687 0.215531190361889 0.220555083819884 0.219083405939377 0.216345187257280 0.219019462104897 0.226604305880891 0.230438836428938 0.222066348447445 0.227283427888222 1 1 + 17561924 17562475 17562213.273 17560649 17562709 + gene protein_coding_gene FALSE TRUE AT1G47710.1 serpin, putative / serine protease inhibitor, putative similar to serpin, putative / serine protease inhibitor, putative [Arabidopsis thaliana] (TAIR:AT3G45220.1); similar to serpin-like protein [Citrus x paradisi] (GB:AAN76362.1); contains InterPro domain Proteinase inhibitor I4, serpin; (InterPro:IPR000215) 0.0800203082796496 1.02599136822663 0.333534332791357 1 1.28992784870179 16.0786530389282 0.0800203082796496 0.0562094797663859
AT3G55460_at 9.17126887930314 9.45958723749143 9.1813309291155 9.27762068448996 9.64991718309245 9.42345143361606 8.92691043877034 9.29749845634752 8.90589545087445 8.81396155665802 9.10128449066836 8.84881824881881 8.93719978380765 9.11728597218634 8.870450768292 8.97339928926757 8.2036141588386 8.83119611194937 8.79896759911503 0.135059498119058 0.123280452421534 0.134453408740153 0.125275926318132 0.130754808139304 0.131203413698304 0.127172541703814 0.129120929064563 0.143865857629774 0.133777779582288 0.126059400543470 0.126847860637434 0.128374280087809 0.127051299841508 0.130148370822400 0.126329026992456 0.159822489927765 0.134295686542084 0.123280452421534 3 3|0 +|/ 20572317 20574438 20573869.571 20571785 20574740 + gene protein_coding_gene FALSE TRUE AT3G55460.1 SCL30 (SC35-like splicing factor 30); RNA binding encodes an SC35-like splicing factor that is localized to nuclear specks. similar to SCL30a (SC35-like splicing factor 30a), RNA binding [Arabidopsis thaliana] (TAIR:AT3G13570.1); similar to Os02g0252100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046448.1); similar to pre-mRNA splicing factor [Oryza sativa (japonica cultivar-group)] (GB:BAC78592.1); similar to Os12g0572400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067091.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0950308526815709 1.02556416695008 0.333724343762463 1 1.28952224973199 18.1484553078755 0.0950308526815709 0.091738790497063
AT1G36070_at 6.13383696708022 5.73069890384869 6.02213262095031 5.80042679832031 7.01434457522409 6.51146376414471 5.32237794247664 5.08241105070242 5.04620652156706 5.47146076556217 5.09815050043321 4.6411167333921 4.8447201795094 5.64745214231522 4.74826735755612 5.31400193132792 4.87576826209488 4.97960311238065 6.1729033131054 0.235957303827219 0.235957303827219 0.240851015459961 0.239549091545915 0.240558482279922 0.267443598631014 0.244852516183510 0.244200086690614 0.26508785113509 0.235957303827219 0.243830004942209 0.237399727858236 0.245563635016760 0.242695397517617 0.239149749136422 0.250527806812433 0.248887144807049 0.255461415596001 0.237884653756307 1 1 - 13468436 13469205 13468775.909 13468123 13471888 - gene protein_coding_gene FALSE TRUE AT1G36070.1 WD-40 repeat family protein similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G78070.2); similar to WD-40 repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96310.1); similar to WD domain, G-beta repeat containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85309.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.112436108798753 1.02531934491579 0.333833273255193 1 1.28928986564443 11.2432908582373 0.112436108798753 0.125048848526203
AT1G64440_at 5.32373775694831 4.78906950148058 5.0183285577541 5.38842879957841 5.21022218757177 5.22248032803562 5.72323845202262 5.43576116035139 5.46068686888443 5.46960176099745 5.33242407557629 5.77254079248829 5.22646402443831 5.46489528531944 5.47333789072701 5.22394649741396 5.40218391270068 5.15728278505971 5.55798994296651 0.191915468905736 0.191303162238942 0.190303605791564 0.200994577481093 0.191267390593917 0.198161267489529 0.188393731777834 0.192678878723514 0.201704432336521 0.198039478147936 0.190157632147753 0.191261518353137 0.19173441016278 0.192062798564580 0.191502077685865 0.189406663926109 0.193094830998773 0.202989073351824 0.190977044883723 1 1|0 +|/ 23941950 23942984 23942180.3 23940693 23943562 + gene protein_coding_gene FALSE TRUE AT1G64440.1 RHD1 (ROOT HAIR DEFECTIVE 1) Encodes a protein with UDP-D-glucose 4-epimerase activity. Mutants in RHD1 have abnormally shaped root hairs with a bulbous region at the base. Allelic to REB1 encoding a UDP-D-glucose 4-epimerase involved in cell wall biosynthesis. similar to UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2), UDP-glucose 4-epimerase/ protein dimerization [Arabidopsis thaliana] (TAIR:AT4G23920.1); similar to UDP-glucose 4-epimerase [Medicago truncatula] (GB:ABE94042.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089); contains InterPro domain UDP-glucose 4-epimerase; (InterPro:IPR005886) -0.111272599558210 -1.02479160185463 0.334068176262746 1 1.28878907788354 10.7027719757586 -0.111272599558210 0.123056077979464
AT2G02510_at 9.69281647796815 9.76474955629186 9.50423416787057 9.63290040779813 9.42841137976627 8.84166519307372 9.50599482947175 9.7162003434625 9.5210690371129 9.58764623702932 9.68844647706196 9.88144105428531 9.34757309378068 9.6514329621283 9.62994116835275 9.51111779657047 9.27316467942933 9.67519757975892 9.31148393413642 0.110155427718191 0.107408373387840 0.117117001697753 0.111236701313667 0.113637759997145 0.126455250200492 0.115824832892318 0.110167375287507 0.120242748285608 0.109060263268485 0.110554478565931 0.112764981982335 0.111991579005687 0.114983485265959 0.10925575399767 0.108077191274225 0.117264999703092 0.108178480365028 0.1108924971218 2 2 + 673369 673514 673453.545 673304 674739 + gene protein_coding_gene FALSE TRUE AT2G02510.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G14450.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15588.1) -0.104623949671651 -1.02452277277397 0.334187883007230 1 1.28853405522785 19.0387160882198 -0.104623949671651 0.110834293187329
AT2G45810_at 9.34587869916572 9.57645774885737 9.62918716450826 9.58657430342828 10.1721729026698 9.57927134710008 9.91297667407424 9.77847529042958 9.29504829973436 9.26032849921813 9.5058181058589 9.37304842749464 9.613883554187 9.4686982916022 9.11981499144026 9.63747253794927 9.41281264716483 9.31928303511133 9.3699247810051 0.129404498295611 0.128750810605292 0.129577495115009 0.131796990162951 0.131387855757001 0.138067206063603 0.130750596133244 0.128447335289510 0.149403972678647 0.135151172746820 0.127055015719960 0.131312921231908 0.128647080587796 0.128207942123926 0.136334986963143 0.128236057329577 0.142744678208883 0.132398074213341 0.129856963501364 2 2|0 +|/ 18868450 18869341 18868762.6 18866673 18869992 + gene protein_coding_gene FALSE TRUE AT2G45810.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 6 (EC 3.6.1.-) (RH6) [Arabidopsis Thaliana] (GB:Q94BV4;GB:O80838;GB:Q9SB95); similar to DEAD/DEAH box helicase, putative (RH12) [Arabidopsis thaliana] (TAIR:AT3G61240.2); similar to DEAD/DEAH box helicase, putative [Arabidopsis thaliana] (TAIR:AT4G00660.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84720.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84723.1); similar to Helicase, C-terminal [Medicago truncatula] (GB:ABE84719.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.105637207580036 1.02439419112934 0.334245150649035 1 1.28841209526692 19.0675181706976 0.105637207580036 0.112765455971107
AT1G16730_at 5.03826588032683 5.31470611745771 5.49392375332675 5.79057994895258 5.58102399583625 5.50785115464339 5.94399219880639 6.81052829522339 4.89269346606027 5.5204766113681 4.9390075157098 4.4937130238595 5.30739733501775 4.92899766278452 4.84025176044392 5.41834774253191 5.62048255289456 5.02961248545996 5.07079832815644 0.210728748360134 0.214740976148076 0.209523927876033 0.211370064272813 0.216973962815375 0.209523927876033 0.221087697814666 0.228519347242118 0.228624643623456 0.21526625682568 0.212703361105757 0.215352395298412 0.209523927876033 0.214512476189422 0.221729301595342 0.209523927876033 0.214642787021996 0.211328042668276 0.213474439203921 1 1|0 -|/ 5726880 5727237 5727074.9 5726361 5727305 - gene protein_coding_gene FALSE TRUE AT1G16730.1 unknown protein -0.136312475893851 -1.02432871416140 0.334274315638627 1 1.28834999470991 10.8018834489213 -0.136312475893851 0.166048017208010
AT3G03050_at 4.18254641823349 4.81209036480679 3.80850529950656 3.95405704812463 4.56095689091361 4.64704818347085 4.42675522153172 4.44373990917624 5.16521086706087 4.7873994238028 4.91754722774366 4.93580852597774 4.97716361431351 5.40072335374762 4.78950885309341 5.10592282190943 4.74266194741126 5.01422034678404 4.96662339357625 0.20908903568281 0.205606966791175 0.203445919847457 0.20947925531849 0.205377905049948 0.201573972734369 0.215096089777812 0.21675741774447 0.218376275430373 0.205563908417802 0.211300837162483 0.20002205253175 0.206665529657117 0.208193224919739 0.218555597765158 0.202297161797562 0.216306440347229 0.211398258159113 0.202852540499867 3 3 + 691185 691610 691396.636 687059 691905 + gene protein_coding_gene FALSE TRUE AT3G03050.1 CSLD3 (CELLULOSE SYNTHASE-LIKE 3); cellulose synthase/ transferase, transferring glycosyl groups encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide. similar to ATCSLD4 (Cellulose synthase-like D4), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G38190.1); similar to ATCSLD5 (Cellulose synthase-like D5), cellulose synthase [Arabidopsis thaliana] (TAIR:AT1G02730.1); similar to ATCSLD2 (Cellulose synthase-like D2), cellulose synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G16910.1); similar to cellulose synthase-like protein D4 [Populus tremuloides] (GB:AAO03579.1); similar to putative cellulose synthase [Oryza sativa (japonica cultivar-group)] (GB:AAL58185.1); similar to cellulose synthase D-like protein [Nicotiana alata] (GB:AAK49455.1); contains InterPro domain Cellulose synthase; (InterPro:IPR005150) -0.105637215686934 -1.02397847224721 0.334430354713019 1 1.28801786490883 9.33372365756343 -0.105637215686934 0.112845850890929
AT2G13650_at 7.84387653607132 8.09391621077568 8.32663513044222 8.26197092934267 8.21696819047502 7.60371934436132 7.54588875072462 8.07600877851932 7.46606319461323 6.9067130170079 7.14111469036281 7.4106349713299 7.0225111478978 7.38065461015222 6.73246886191108 7.01660279616815 6.98972341469039 7.23587397590956 6.86341141643315 0.192026437895504 0.193048585336351 0.196985436914723 0.190536974318200 0.192479684593907 0.212107357171985 0.210604807207873 0.191821853370511 0.201041874414347 0.187567197106655 0.191182085564458 0.187567197106655 0.190046065694593 0.197863933050370 0.201600015383888 0.189727144716125 0.202181255003502 0.201918748249219 0.188122912405813 2 0|2 /|- 5694854 5695377 5695147.333 5694476 5697790 - gene protein_coding_gene FALSE TRUE AT2G13650.1|AT2G13650.2 GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1); nucleotide-sugar transporter|GONST1 (GOLGI NUCLEOTIDE SUGAR TRANSPORTER 1) GDP-mannose transporter Identical to GDP-mannose transporter (GONST1) [Arabidopsis Thaliana] (GB:Q941R4;GB:Q9SIT2); similar to nucleotide-sugar transporter family protein [Arabidopsis thaliana] (TAIR:AT1G07290.1); similar to GONST2 Gol (GB:ABF99644.1); similar to Os08g0107400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060797.1); similar to putative lipophosphoglycan biosynthetic [Oryza sativa] (GB:AAK82435.1); contains domain SOLUTE CARRIER FAMILY 35 MEMBER D (PTHR11132:SF13); contains domain SOLUTE CARRIER FAMILY 35 (PTHR11132) 0.124934839416939 1.02346219277455 0.334660468047114 1 1.28752844184591 15.0935866177911 0.124934839416939 0.147229014165182
AT3G01480_at 10.7691159291621 10.8157122260276 10.3823851852089 10.3165518268873 10.8857289894633 10.4677423092698 11.3020170382169 11.178638557662 11.2662817086935 11.538556783813 12.0300079762016 12.0544376435776 11.5991371917244 11.6917533595183 12.0784103038024 11.8691474085720 11.1647014732483 11.6606978705985 11.5184006142251 0.0848196582282478 0.0852873011081706 0.0918195966547559 0.0862967052884228 0.0865306066265396 0.0978377213477137 0.0863893683511434 0.0894418842118104 0.095696808165504 0.0890536374357117 0.0866880485999717 0.0844404093437341 0.085550051352853 0.0933561373040617 0.0852642207405371 0.0844404093437341 0.102822013256896 0.0915672519616266 0.09113491214969 3 3 + 189856 190643 190241.364 188391 190858 + gene protein_coding_gene FALSE TRUE AT3G01480.1 peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative similar to peptidyl-prolyl cis-trans isomerase TLP38, chloroplast / thylakoid lumen PPIase of 38 kDa / cyclophilin / rotamase [Arabidopsis thaliana] (TAIR:AT3G15520.1); similar to Peptidyl-prolyl cis-trans isomerase, chloroplast precursor (40 kDa thylakoid lumen PPIase) (40 kDa thylakoid lumen rotamase) (GB:O49939); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.087905954449136 -1.02327381038342 0.33474446297455 1 1.28734990583026 22.3695446855618 -0.087905954449136 0.0767005836889015
AT1G50300_at 6.67915635296211 6.0574675556529 6.3563534750202 6.34785807958647 6.35996397305492 6.61517711121187 6.2018859060202 6.10009363954967 7.23332175606108 6.7223439459796 6.70668065273491 6.82407447902274 6.58640279140415 6.81003073599959 6.18574286424993 6.35707664546977 6.61361498978967 6.5522461159391 6.91151230390015 0.195435184465416 0.198938651380629 0.196469172370842 0.195627464759399 0.208622814686958 0.206636671500562 0.202012923785678 0.197090288227644 0.202611321952411 0.198246524476012 0.204233715756304 0.195435184465416 0.199153642534383 0.20778579156343 0.199257145381334 0.195485271881853 0.206373509743682 0.199508874223237 0.198948177162918 1 1|0 -|/ 18632493 18634561 18633471 18632223 18635614 - gene protein_coding_gene FALSE TRUE AT1G50300.1 zinc finger (Ran-binding) family protein / RNA recognition motif (RRM)-containing protein similar to zinc finger (Ran-binding) family protein [Arabidopsis thaliana] (TAIR:AT5G58470.2); similar to RNA-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD33184.1); similar to Os07g0296200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059411.1); similar to Os09g0299500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062815.1); contains InterPro domain Zinc finger, RanBP2-type; (InterPro:IPR001876); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.108027523240950 -1.02221082230614 0.335218724371859 1 1.28634294809127 13.1073493422855 -0.108027523240950 0.117634478167226
AT1G25390_at 8.21466513376614 8.47072815158334 7.98950407146199 8.04990305246775 8.01272626294323 8.00592416895003 6.99376982807674 7.3124340230992 7.09296139935296 6.96559979210258 6.31019696720057 6.82462807182596 6.68364049699482 6.39180285099847 5.73825511634352 7.08774793187348 7.19407935046793 6.52017044943066 7.03639933475746 0.223919738695198 0.228200022014100 0.220435657140596 0.226980272671932 0.220369474084498 0.232586579668909 0.225952704552071 0.225576062209445 0.221622828560686 0.21893724023958 0.224101461213596 0.227305660745247 0.225381859102425 0.222423031757011 0.236918883689962 0.222943299540955 0.219137695955062 0.227808982343842 0.226862939159259 1 1 - 8906627 8907193 8906922.909 8906439 8908841 - gene protein_coding_gene FALSE TRUE AT1G25390.1 protein kinase family protein similar to serine/threonine protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G38210.1); similar to wall-associated kinase 4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82478.1); similar to Os01g0136400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041957.1); similar to Os05g0550800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056244.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.085611624760674 -1.02220464684342 0.335221481107519 1 1.28633710047248 14.6939411681083 -0.085611624760674 0.0715219335936512
AT1G20670_at 5.34044204174841 5.93754018483705 5.20500699802816 5.47416670592317 6.32956598738494 6.48702071087915 6.33359060082973 5.98156400033876 6.06039804888438 6.01292798418695 5.7427111448846 5.91987782550102 5.55141670323357 5.69413959117289 6.1866673899627 6.07156251896807 6.27457218385759 5.73938269806083 6.2394722693556 0.225553981295553 0.223087562338200 0.222767634821138 0.220993698864249 0.223983984212115 0.226612731167635 0.224289396142402 0.225391372333197 0.221670201901008 0.232139807871133 0.223851883613086 0.220172421976299 0.220172421976299 0.225409360839861 0.225367918999355 0.220172421976299 0.22261417773723 0.246364802079279 0.228271837183865 1 1 - 7164530 7165093 7164793.091 7164527 7167923 - gene protein_coding_gene FALSE TRUE AT1G20670.1 DNA-binding bromodomain-containing protein similar to DNA-binding bromodomain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76380.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22713.1); similar to Os03g0130800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048857.1); similar to Os09g0550000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063862.1); contains InterPro domain Bromodomain; (InterPro:IPR001487) -0.115534475119226 -1.02049827474289 0.335983871784681 1 1.28472235023401 11.8870158326282 -0.115534475119226 0.131531546930209
AT1G51100_at 4.82434684975845 5.60431426682082 4.93049322426937 5.24311559698021 5.48732797360198 4.82684219832678 6.94449526762653 6.60420613840313 4.92540163613622 5.41343742553557 6.44961494171742 6.07521273538751 5.79444024720868 5.76412879398102 6.36876877284672 5.60574810013658 5.14260829395945 4.91919021661888 5.25749073139898 0.280395844980266 0.280951559508745 0.284627513489504 0.286999740364590 0.286792013733544 0.296368849709896 0.28060817371808 0.281913426325714 0.292006995533167 0.287559208089530 0.291267252700504 0.279030825410005 0.282132523798491 0.297351972721582 0.276746452626480 0.282005170456785 0.294968562265695 0.293386829217196 0.282258471640132 1 1 + 18938046 18938619 18938232.545 18937976 18938861 + gene protein_coding_gene FALSE TRUE AT1G51100.1 similar to Os01g0676200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043849.1) -0.153104233657934 -1.02020056277899 0.336117022156041 1 1.28444083476653 11.0400129946846 -0.153104233657934 0.194108410495794
AT1G64060_at 5.40038198714216 5.33287008444978 5.81363421782731 5.729568231596 4.95788131695174 4.5903786371051 5.85013309111958 5.38075456834027 4.16709186170905 4.37033822352852 4.62618571919360 4.19238471305999 4.7873555799306 4.3241078809944 4.46675518977352 4.55512654727170 4.90023416073739 5.05557444759145 4.04230733035936 0.236521984931058 0.231736509295071 0.236763723863630 0.238455396622429 0.231736509295071 0.238679742756116 0.239355854116000 0.236469423594336 0.243342922387401 0.237064633743311 0.238089770206779 0.236654239647165 0.231736509295071 0.238807868293963 0.240645684679524 0.235997857322303 0.233818738336500 0.233537823679673 0.23623223640807 1 1|0 +|/ 23778863 23779403 23779126.429 23773437 23780594 + gene protein_coding_gene FALSE TRUE AT1G64060.1 ATRBOH F (RESPIRATORY BURST OXIDASE PROTEIN F); NAD(P)H oxidase Interacts with AtrbohD gene to fine tune the spatial control of ROI production and hypersensitive response to cell in and around infection site. similar to respiratory burst oxidase, putative / NADPH oxidase, putative [Arabidopsis thaliana] (TAIR:AT4G11230.1); similar to RBOHD (RESPIRATORY BURST OXIDASE PROTEIN D) [Arabidopsis thaliana] (TAIR:AT5G47910.1); similar to respiratory burst oxidase protein E (RbohE) / NADPH oxidase [Arabidopsis thaliana] (TAIR:AT1G19230.1); similar to respiratory burst oxidase protein F [Solanum tuberosum] (GB:BAB84124.1); similar to respiratory burst oxydase [Solanum tuberosum] (GB:BAC06825.1); similar to respiratory burst oxidase homolog [Nicotiana benthamiana] (GB:BAC56864.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Cytochrome b-245, heavy chain; (InterPro:IPR000778); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ferric reductase, NAD binding; (InterPro:IPR013121); contains InterPro domain FAD-binding 8; (InterPro:IPR013112); contains InterPro domain Ferric reductase-like transmembrane component, N-terminal; (InterPro:IPR013130); contains InterPro domain Ferric reductase-like transmembrane component; (InterPro:IPR002916); contains InterPro domain NADPH oxidase Respiratory burst; (InterPro:IPR013623) 0.101025196363597 1.01985920207724 0.336269743796412 1 1.28411812245059 9.78530593432552 0.101025196363597 0.104837332956277
AT3G61800_at 5.37062172858761 5.20002327906226 5.11978035750654 5.43787503333251 5.17207994072777 5.15140306185253 4.57818162954578 4.59057246998729 5.26883353790017 4.57563639912614 4.62800517439313 4.98884475969194 4.43685465410736 5.06126807167673 4.83297017765201 5.03149254666472 4.94652000917018 4.65757891613701 4.99136646013419 0.174753442585477 0.17840582484234 0.177483329273221 0.174255368908045 0.177212882015339 0.175252675306901 0.189217319518758 0.176026617631820 0.174919257296888 0.182207413405194 0.176181594288853 0.172648087381648 0.175949662954281 0.177596688960768 0.177975770735813 0.176069419298393 0.18996231420236 0.174012911438783 0.178051868525277 3 3 - 22885699 22886264 22886015.727 22885530 22887821 - gene protein_coding_gene FALSE TRUE AT3G61800.1 similar to hypothetical protein DDBDRAFT_0189958 [Dictyostelium discoideum AX4] (GB:XP_646872.1); similar to Os02g0293800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046601.1); contains InterPro domain ENTH/VHS; (InterPro:IPR008942) 0.0815489055961194 1.01581598305314 0.33808267196018 1 1.28030206836198 9.96167748144535 0.0815489055961194 0.0626039735199262
AT3G14075_at 5.18471270615052 5.24988967122021 5.31001244258075 5.13003998948784 5.58077098791188 5.29084262700014 5.0419721875371 5.17178517972798 5.45394770344108 5.46040665689057 5.16632933489923 5.22290008359953 5.14704853685105 5.45240795257113 5.31563969999606 5.48818584102187 5.42501073292068 5.15305742774204 4.97984654863481 0.179222119371079 0.193071478150628 0.182638278926959 0.169719646701676 0.176361142686490 0.196899206719295 0.175488100457197 0.178165998739611 0.179831339509201 0.179478796535154 0.172642722833639 0.172752515192277 0.169547323031591 0.183910379341738 0.169547323031591 0.173917107944312 0.179215210651398 0.182277140365946 0.186553445891324 3 3 - 4663880 4664315 4664081.091 4663609 4666975 - gene protein_coding_gene FALSE TRUE AT3G14075.1 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT4G16070.1); similar to Os02g0780700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048306.1); similar to Os01g0309900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042853.1); similar to Lipase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99539.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921); contains InterPro domain Lipase 3, N-terminal; (InterPro:IPR005592) 0.0820410285654557 1.01447650171921 0.338684917861955 1 1.27904040486700 10.5421979343799 0.0820410285654557 0.0641815836810205
AT1G30250_at 11.419242618057 11.8478035436300 12.0056498518210 12.1729932433124 12.1895178515609 12.2164310253412 11.5777489292496 12.2231298059330 10.8386693581618 11.6967315535253 11.7554253810608 10.9299117401772 11.7191804748151 11.0004290656872 10.4335547340771 10.7929559529783 11.3191843948359 11.1551148386531 11.3087330879652 0.102068937659313 0.0941961498380104 0.094796909015644 0.0940448441165077 0.0940915992785894 0.0957023493939073 0.0939707025252219 0.0939707025252219 0.110012220949150 0.0975823084611657 0.0977831794834094 0.0969598900379207 0.0984174753752028 0.113003833348293 0.0963783932632694 0.0939707025252219 0.115753518499190 0.100309542487080 0.0939707025252219 1 1 - 10647258 10647367 10647315.833 10646971 10647495 - gene protein_coding_gene FALSE TRUE AT1G30250.1 unknown protein 0.118004170846479 1.01382164386164 0.338979646446001 1 1.27842405576944 23.1663633949480 0.118004170846479 0.137238902992558
AT2G41980_at 5.89808209135713 5.78167357196657 4.99658130376644 4.41438230614759 6.0715046631514 5.35683157516357 6.49557662165619 6.07351714287964 4.68257976577472 4.35537979963687 5.27617184593125 5.62934467831233 5.43404906259239 5.26126668031758 4.858677424903 5.08189766768366 4.28481553856578 4.84587063104566 4.50445036475242 0.226215462849173 0.220920587177289 0.225184357205634 0.220622861429295 0.219171127611172 0.226523285479532 0.22136648182752 0.219171127611172 0.226302724356766 0.223251795290007 0.219679812618159 0.224064424159505 0.219171127611172 0.219171127611172 0.22859673654269 0.221352754444793 0.23399514463933 0.225912121080731 0.222322768494651 2 2|0 -|/ 17530590 17531276 17530953.9 17530572 17531770 - gene protein_coding_gene FALSE TRUE AT2G41980.1 seven in absentia (SINA) family protein Identical to Putative E3 ubiquitin-protein ligase SINAT1 (EC 6.3.2.-) (Seven in absentia homolog 1) (SINAT1) [Arabidopsis Thaliana] (GB:P93748); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G58040.1); similar to SINA2p [Vitis vinifera] (GB:CAB40578.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.141256173563337 -1.01335387306659 0.339190293185598 1 1.27798397899879 10.4350928267895 -0.141256173563337 0.176600435372662
AT4G12570_at 6.98349367325198 7.53402497793914 7.44157870378284 7.46197854240956 7.80955621538076 7.82218188109317 6.6434263729188 6.80637246757793 6.51830172529672 6.60331464916686 5.88720058636457 5.64149680771285 6.07499920308661 5.69888475130624 5.23254555063889 6.53200139638518 6.40918096540033 5.64081012207474 7.05853955479466 0.230155253462445 0.226810397424252 0.231925702107966 0.232416554689792 0.233155709390975 0.236685427965809 0.230800022715270 0.23348099732921 0.259938346684409 0.230038110542190 0.226810397424252 0.238886396127024 0.226810397424252 0.229969655193697 0.237681032107261 0.228887055375494 0.235703307547351 0.243170530417088 0.232239309518589 4 4 + 7448211 7448781 7448518.545 7445359 7449083 + gene protein_coding_gene FALSE TRUE AT4G12570.1 UPL5 (UBIQUITIN PROTEIN LIGASE 5); ubiquitin-protein ligase similar to UPL1 (UBIQUITIN-PROTEIN LIGASE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G55860.1); similar to HECT-domain (ubiquitin-transferase), putative [Medicago truncatula] (GB:ABD32998.1); contains InterPro domain HECT; (InterPro:IPR000569); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.0975421287351428 -1.01212819459805 0.339742713603062 1 1.27683160499701 13.6210058872729 -0.0975421287351428 0.0994442191141113
AT1G52740_at 10.7267269962931 10.9609557702403 10.6848023095658 10.7556179075632 11.2268053720525 10.9731300174618 10.2456666877033 10.6272529416635 10.6258217178287 10.6285190655783 10.9772254821561 10.7014644982085 10.8041080797024 10.5864169906880 10.7183030587745 10.7100818916028 10.3343910022940 10.4199841754140 10.9689868986669 0.080412366195152 0.082208036782867 0.0816858297470141 0.0829128512005486 0.0809599590619948 0.0873981756580392 0.0828455019324328 0.0857604810081858 0.094897395340392 0.080412366195152 0.0821640774279329 0.080412366195152 0.0821461210315888 0.0872366461766466 0.0809044882424022 0.0816639034748582 0.0957787297776205 0.0854488534757152 0.080412366195152 1 1|0 +|/ 19649107 19649856 19649611.7 19648936 19650150 + gene protein_coding_gene FALSE TRUE AT1G52740.1 histone H2A, putative Identical to Probable histone H2A variant 3 (H2A.F/Z 3) (HTA9) [Arabidopsis Thaliana] (GB:Q9C944); similar to histone H2A.F/Z [Arabidopsis thaliana] (TAIR:AT3G54560.1); similar to putative histone H2A [Pinus pinaster] (GB:CAC84677.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0926629863414243 1.00943066639710 0.340960914601146 1 1.27429918112068 21.4739228126745 0.0926629863414243 0.089894730902826
AT1G15920_at 7.36680078999269 8.0977083282664 7.28734898788881 7.7770104934952 8.95509901959647 8.18670566450236 8.22970512325626 8.21934143132652 8.10828101046447 7.94411343625879 8.03884277908449 7.80392098099171 7.78755245241879 8.09438999263349 7.00108820851695 8.0353268122522 7.5668998652898 7.61985878959491 8.3357191399046 0.225098067702618 0.204337762886432 0.234475242496070 0.211852199086254 0.20243904926984 0.216601146160596 0.197491338507258 0.205466560448188 0.204515176738514 0.204426028583558 0.205288715519415 0.208457526748020 0.202882143364315 0.209226126481967 0.211324312419470 0.197187410807332 0.213604330465224 0.203195732616726 0.210553495425896 1 1 + 5470308 5470782 5470514.818 5469383 5471143 + gene protein_coding_gene FALSE TRUE AT1G15920.1|AT1G15920.2 CCR4-NOT transcription complex protein, putative similar to CCR4-NOT transcription complex protein, putative [Arabidopsis thaliana] (TAIR:AT2G32070.1); similar to Polynucleotidyl transferase, Ribonuclease H fold [Medicago truncatula] (GB:ABE87519.1); contains InterPro domain Ribonuclease CAF1; (InterPro:IPR006941); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) -0.156367043642289 -1.0085164559443 0.341374523113401 1 1.27344210413027 15.9513930701108 -0.156367043642289 0.202150513097957
AT2G44920_at 9.92595569482811 9.73354948038284 9.7388789676988 9.52933326861523 10.1443217502147 9.86832580343973 10.0382662752911 9.83877373735151 9.65808422882393 9.73676603609515 9.79604607784023 9.86560586003528 9.7637430459509 9.86695761049338 10.1125365788697 10.0540485814434 9.96694992528362 9.77659601939164 9.59465315132203 0.096148841530951 0.0961420243663921 0.103633089537452 0.101746121381588 0.0961420243663921 0.102742520768428 0.0989342441765099 0.0981271352528796 0.107886587577734 0.0974861353118678 0.0962628359057962 0.0962938182795267 0.098754022356587 0.0961420243663921 0.101118843282345 0.0966458092476452 0.0998413311225649 0.0975324243374914 0.099743578733151 2 0|2 /|+ 18531973 18533355 18532633.429 18531462 18533902 + gene protein_coding_gene FALSE TRUE AT2G44920.1|AT2G44920.2 thylakoid lumenal 15 kDa protein, chloroplast Identical to Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) [Arabidopsis Thaliana] (GB:O22160;GB:Q949R8); similar to FIP2 (FH protein interacting protein 2), voltage-gated potassium channel [Arabidopsis thaliana] (TAIR:AT5G55000.1); similar to hypothetical protein BL107_13840 [Synechococcus sp. BL107] (GB:ZP_01468001.1); similar to Os01g0144100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042002.1); similar to hypothetical protein NAS141_07590 [Sulfitobacter sp. NAS-14.1] (GB:ZP_00964231.1); contains InterPro domain Pentapeptide repeat; (InterPro:IPR001646)|Identical to Thylakoid lumenal 15 kDa protein, chloroplast precursor (p15) [Arabidopsis Thaliana] (GB:O22160;GB:Q949R8); similar to thylakoid lumenal protein-related [Arabidopsis thaliana] (TAIR:AT1G12250.1); similar to hypothetical protein BL107_13840 [Synechococcus sp. BL107] (GB:ZP_01468001.1); similar to Os01g0144100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042002.1); contains InterPro domain Pentapeptide repeat; (InterPro:IPR001646) 0.0866106537642743 1.00774774214066 0.341722600540218 1 1.27272189324811 19.6339147561414 0.0866106537642743 0.0767903793573794
AT3G62790_at 8.26448191172775 8.31244078772266 8.42531467507757 8.66294395535654 8.14998708278485 8.30327050840618 8.30483225013508 8.70540949648935 8.30060491335507 8.55668005510893 8.87694977803104 9.0352718988998 8.65108154415746 8.79567700381675 8.58720648120135 8.78530971699758 8.39315233105808 8.50075797620386 8.67623592836422 0.169562000663298 0.168428396771537 0.166133743828966 0.167022066734691 0.168427221464593 0.161562521177105 0.167879185229154 0.164242056493282 0.174132515687368 0.161252696713846 0.165098383781149 0.169655480795922 0.162195729168028 0.173882630048644 0.163994599546786 0.164162762645056 0.167791812813149 0.169668406170642 0.161807331862473 3 3|0 -|/ 23234303 23235141 23234783.6 23234036 23235283 - gene protein_coding_gene FALSE TRUE AT3G62790.1 NADH-ubiquinone oxidoreductase-related similar to NADH-ubiquinone oxidoreductase-related [Arabidopsis thaliana] (TAIR:AT2G47690.1); similar to fiber protein Fb14 [Gossypium barbadense] (GB:AAP34361.1) 0.0902950764536175 1.00701085480984 0.342056519591259 1 1.27203189737906 16.9982598202484 0.0902950764536175 0.0852591816940454
AT4G10840_at 9.94214401251335 10.0765944626435 9.94350510856608 10.0645438641970 10.0213236453405 10.1402307956390 9.80067419660488 9.86270001986997 10.5256386670223 9.91431435479281 10.4865828845310 10.2224441702026 9.97430915764079 10.1223002204007 10.2265776928802 10.0207639147590 9.99066603050928 10.3120114885167 9.99502239590549 0.0720949804611849 0.0719825497793816 0.0706154303075053 0.0728425223219673 0.0714565113936384 0.0774149600641365 0.0709586476837978 0.0735319880616895 0.0759336243819779 0.0747928018738017 0.0696445814498351 0.0713772138729408 0.0738892432152982 0.071641477645842 0.074021936494513 0.069571450909101 0.0717152686060149 0.0736079220847235 0.0715479395929288 4 4 + 6657988 6658994 6658714.636 6656512 6659261 + gene protein_coding_gene FALSE TRUE AT4G10840.1|AT4G10840.2 kinesin light chain-related similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT3G27960.1); similar to kinesin light chain-related [Musa acuminata] (GB:ABF70051.1); similar to glycoside hydrolase family 17 protein [Musa balbisiana] (GB:ABF70142.1); similar to similar to A. thaliana protein BAB01483 similar to kinesin light chain [Hordeum vulgare subsp. vulgare] (GB:AAM13438.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to kinesin light chain-related [Arabidopsis thaliana] (TAIR:AT3G27960.1); similar to Os02g0708400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047883.1); similar to Os02g0109800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045645.1); similar to similar to A. thaliana protein BAB01483 similar to kinesin light chain [Hordeum vulgare subsp. vulgare] (GB:AAM13438.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0731689097754451 1.00490472096981 0.343012274808029 1 1.27006192913428 20.1386888885902 0.0731689097754451 0.0389712867077376
AT3G13780_at 4.64777050836591 4.41514856151768 4.88325020959773 4.44096969637271 5.35844521521758 4.39946077325667 4.21373963995728 3.67429072040918 5.34269244089348 4.87120984694862 4.9535964927788 4.98627452734829 4.84827869671103 5.35634616509393 4.55420032873473 5.1404911286727 4.35398333404296 4.265844743496 4.84641212289606 0.228796637847662 0.226174760358184 0.230892078028597 0.225787541907494 0.238454198908960 0.244612089232389 0.2291002996972 0.223279566715664 0.228850594844658 0.226638956139269 0.224160373005724 0.223207595681563 0.224678995753406 0.224357917428929 0.229337807132828 0.223432202667038 0.234892707357299 0.225168361824617 0.231680233414557 3 3 + 4525446 4526105 4525803.455 4525079 4526221 + gene protein_coding_gene FALSE TRUE AT3G13780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G02720.1); similar to SMAD/FHA [Medicago truncatula] (GB:ABD28514.1); contains InterPro domain SMAD/FHA; (InterPro:IPR008984) 0.16003311978954 1.00400871633379 0.343419491457667 1 1.26922481645950 9.41787528093144 0.16003311978954 0.209130050568343
AT2G15020_at 6.67978056867923 6.60039626265509 8.57106180938296 8.59590059419877 8.28054054851405 8.22178906939287 9.7742540473697 9.73751336023968 8.32726838403484 9.22070454364471 8.20456124930011 7.70931722019948 9.33443672441736 8.97661761105558 7.75163812311621 9.76457510797535 9.83150500961723 8.68662090479338 9.04236801794613 0.144154271940647 0.144692534075365 0.131139981665516 0.130536583525603 0.133461874662885 0.132471649783814 0.143347653784976 0.136809260428641 0.137285273294223 0.132907905476915 0.135786556774813 0.134183725233169 0.130699431790280 0.137670815486000 0.134957845940873 0.134168585004041 0.13381479179699 0.131054936942363 0.130802049446498 2 2 - 6498974 6499363 6499215.091 6498516 6500434 - gene protein_coding_gene FALSE TRUE AT2G15020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64190.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46203.1) 0.0691494787851723 1.00380891309745 0.343510348065695 1 1.26903822424035 17.1305825203963 0.0691494787851723 0.0187350737903725
AT2G46505_at 8.33161029052618 8.45367542638385 8.0483651648154 8.2586599332284 8.05108430192584 7.53820282953403 8.14857796633649 8.34645666707967 7.8628046350744 7.67375852497212 8.11563083891207 8.38322782739552 8.5185174350209 8.16928660889294 8.26672494783919 8.62623115908145 8.12819051672257 8.36019793521193 7.79446875740805 0.204282767549643 0.200990330603276 0.209463008673461 0.207250810344909 0.204810594464383 0.226552535432808 0.216287285757244 0.199869440679310 0.218089751008608 0.213236728132257 0.208032686741723 0.203666576365679 0.199869440679310 0.200637328413143 0.221520301911451 0.199869440679310 0.214002389309349 0.223298392676568 0.221038721876966 2 2 - 19097112 19097482 19097309.364 19096801 19097621 - gene protein_coding_gene FALSE TRUE AT2G46505.1 SDH4 (Succinate dehydrogenase subunit 4) Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion. similar to succinate dehydrogenase subunit 4 [Podophyllum peltatum] (GB:AAK77855.1); similar to succinate oxido-reductase subunit 4 [Lonicera sp. Bergthorsson 0301] (GB:AAW47289.1); similar to succinate dehydrogenase subunit 4 [Gymnocladus dioica] (GB:AAK77856.1); contains domain Fumarate reductase respiratory complex transmembrane subunits (SSF81343) 0.0989941196387099 1.00350046503252 0.343650644535859 1 1.26875022702435 16.1960848463718 0.0989941196387099 0.104024016624980
AT3G55480_at 6.79544624792694 6.98276254855783 6.49277227910929 6.7438636439524 6.82529210624617 6.58223324967671 6.7959397921045 6.7494481600832 7.01073668619036 6.93640800453508 7.02707150441064 7.31230727434295 6.5375731252266 6.30012310969296 7.27089109500615 7.10909189595305 6.5295815184869 7.02193251661311 6.70734364374414 0.227421129305922 0.222944010623542 0.227694534466101 0.239179282727341 0.221007473731385 0.225112238958213 0.220633202527933 0.220934415363532 0.229655633318402 0.225698860421689 0.236567976095698 0.22194876617011 0.217425562967174 0.227382941087536 0.227506355858431 0.219541948847537 0.230904424917547 0.226895240704471 0.223429620179462 3 3 - 20577361 20578046 20577745.273 20577226 20582227 - gene protein_coding_gene FALSE TRUE AT3G55480.1|AT3G55480.2 adaptin family protein similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G11380.1); similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G23460.1); similar to putative adaptor-related protein complex AP-3, beta 2 subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD87374.1); similar to Os01g0973300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045546.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0830584036393138 -1.00345427592044 0.343671657219985 1 1.26870710623674 13.632670228352 -0.0830584036393138 0.0690861765643419
AT1G59960_at 6.45088338958941 6.51975171523459 5.5531241324373 5.4401325890113 5.37176113700357 6.05839268398743 4.29408583972724 4.29881723581886 6.09757736303082 6.07897202715267 6.73532187945708 7.06379986780338 5.77572133966281 6.35615576643113 6.32678045520985 5.58171208214696 5.67667418982738 6.74293978799901 6.66848981328517 0.213577269927802 0.207011697698018 0.211547541567964 0.208393489549264 0.214579447772346 0.213644666824584 0.206533724629173 0.209415204026794 0.219910133352837 0.207031392866071 0.209492383440016 0.210057870179247 0.2149784667157 0.208391077669659 0.211135243398515 0.213509800019683 0.206533724629173 0.209064150160379 0.219572380098534 1 1|0 -|/ 22075099 22075932 22075640.778 22074957 22076812 - gene protein_coding_gene FALSE TRUE AT1G59960.1 aldo/keto reductase, putative similar to aldo/keto reductase, putative [Arabidopsis thaliana] (TAIR:AT1G59950.1); similar to reductase 2 [Hydrangea macrophylla] (GB:AAR89808.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.107838263547511 1.00331330350236 0.343735795427572 1 1.26857550802531 11.7804025431296 0.107838263547511 0.121013997444208
AT4G15700_at 5.97206885362687 6.56438192153185 6.26933185149909 6.60873027578366 6.83161961830812 6.55438174257287 5.95442482442564 6.37001200289943 8.34364426050056 8.06883148230895 8.53485855313252 8.0790676836482 6.43218074818979 7.08196035695713 8.19921007840106 7.48705494902433 7.66035422451558 8.27552553321694 7.06456493573255 0.176006087403817 0.1676087398105 0.171920125066492 0.17331398496822 0.175306573775655 0.174504920676973 0.177361306442623 0.168558742571322 0.175069118615023 0.175508505833618 0.172387181152317 0.173961979476788 0.173386864594805 0.175082789246299 0.172709304832331 0.1676087398105 0.176389099574192 0.177343953828858 0.1676087398105 4 4 + 8937581 8937825 8937696.818 8937391 8937890 + gene protein_coding_gene FALSE TRUE AT4G15700.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S3 (AtGrxS3) (GRXS3) [Arabidopsis Thaliana] (GB:O23421); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15690.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); similar to Glutaredoxin-like family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA99336.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) 0.121945130562496 1.00291542994032 0.343916864826596 1 1.26820416867704 14.1628472573641 0.121945130562496 0.146392340275969
AT1G10660_at 6.75915657178891 7.04339965335767 7.30888195613368 7.65649930149642 8.2926526852915 7.01729775456397 6.9869807803324 6.47816495219051 5.43083513552120 5.76027963065951 5.1700564975491 5.08466942360127 5.91219725053234 5.37753913171733 4.45108426389805 5.74375695195306 6.30791257802311 5.2302779420359 6.18140362114162 0.278655856267457 0.276321869124499 0.278233818963823 0.272758415350556 0.280244531179891 0.292140535090366 0.279171375624964 0.280733160628923 0.281172521663133 0.276733335154190 0.281443557051734 0.2782838527049 0.275905247557500 0.279767959066762 0.281122731891969 0.272758415350556 0.274891119011883 0.273881018094202 0.272758415350556 1 1|0 +|/ 3533627 3534755 3534345.5 3532429 3535132 + gene protein_coding_gene FALSE TRUE AT1G10660.1|AT1G10660.2|AT1G10660.3|AT1G10660.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62960.1); similar to hypothetical protein MtrDRAFT_AC124952g40v1 [Medicago truncatula] (GB:ABE93571.1) 0.185377363713508 1.00029879568285 0.345109475892591 1 1.26576487012431 12.7931423155717 0.185377363713508 0.250005939965518
AT2G17130_at 8.57761104952551 8.70280351561483 8.36741329520475 8.34185906675267 8.00409921844668 7.38063004050405 6.92847281419574 7.40868076762419 6.86565876624347 7.24350879913017 6.95199939752686 7.4135073712532 6.5788329977422 6.96639043135203 6.63913709869159 7.23261729955363 6.54592978847865 6.54023749948642 6.12298781170648 0.211361135931931 0.21517830613303 0.219788998064015 0.219843606604237 0.214223952524494 0.223916546639529 0.214716851577074 0.213247336487263 0.213632577975335 0.211361135931931 0.218079314527655 0.211361135931931 0.21221260146392 0.217507313014532 0.211361135931931 0.211361135931931 0.224178747283839 0.21706465079264 0.213335197977017 2 2|0 -|/ 7468154 7468678 7468336.5 7467896 7469636 - gene protein_coding_gene FALSE TRUE AT2G17130.1|AT2G17130.2 IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2); isocitrate dehydrogenase (NAD+) NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2) Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 2) (NAD(+)-specific ICDH 2) (IDH-II) (IDH2) [Arabidopsis Thaliana] (GB:P93032;GB:Q7XJT6); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61647.1); similar to NAD-dependent isocitrate dehydrogenase beta subunit [Brassica napus] (GB:AAO61645.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804)|Identical to Isocitrate dehydrogenase [NAD] regulatory subunit 2, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 2) (NAD(+)-specific ICDH 2) (IDH-II) (IDH2) [Arabidopsis Thaliana] (GB:P93032;GB:Q7XJT6); similar to IDH1 (ISOCITRATE DEHYDROGENASE 1), isocitrate dehydrogenase (NAD+) [Arabidopsis thaliana] (TAIR:AT4G35260.1); similar to NAD-dependent isocitrate dehydrogenase gamma subunit [Brassica napus] (GB:AAO61648.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) 0.116819030818750 1.00010278786423 0.345198938257105 1 1.26558234434409 14.7652628599189 0.116819030818750 0.137971315002428
AT4G22890_at 12.5394771791575 12.6416054165356 12.8967973958394 12.8132565920624 12.9558421763886 12.8381867885021 13.3876851539288 13.3305834501209 13.1808916787473 13.3866238633596 13.6110201079199 13.5494134498515 13.5533062040128 13.4794846786598 13.3526016849058 13.6693728606735 13.51216474512 13.5510081282331 13.3133652926660 0.0661975561282108 0.0648588215692273 0.0641137465053652 0.0697900887974577 0.0656993161358778 0.0654689317240017 0.0670054855445137 0.0661468150058894 0.0700691545200429 0.0649280023968562 0.069205573685695 0.0636327280362302 0.064725246964375 0.069239074881665 0.0669249352882164 0.0636327280362302 0.0736164393914508 0.0648880696715678 0.0650425681138343 4 4|0 +|/ 12008528 12009139 12008799.75 12006997 12009531 + gene protein_coding_gene FALSE TRUE AT4G22890.1|AT4G22890.2|AT4G22890.3|AT4G22890.4|AT4G22890.5 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11960.1); similar to Os03g0857400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051955.1); similar to Os08g0526300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062297.1); similar to hypothetical protein OSJNBa0003M24.13 [Oryza sativa (japonica cultivar-group)] (GB:AAQ56398.1); contains domain no description (G3D.2.20.25.10); contains domain Zinc beta-ribbon (SSF57783) 0.0711762378800787 0.99956195766091 0.345445876253362 1 1.26507885747813 26.3396409827401 0.0711762378800787 0.0321493638514629
AT4G04950_at 6.63223347040611 7.13693130965016 7.11053470427348 7.43366072016837 7.18282806468115 6.92049831645449 6.87153819587497 7.22845503343227 6.09181249229751 6.46130784789303 6.40371792987192 6.24689021180876 6.52633656290392 6.22847656137227 5.60025948239165 6.46536166628749 6.53207863855502 6.22668354792565 6.19654065726698 0.191457169082949 0.179830810429289 0.200968042018532 0.185249242872624 0.177537851584394 0.190804452443757 0.183294139050493 0.177537851584394 0.181613668477321 0.177537851584394 0.181483084918296 0.185144974231775 0.184461572523967 0.183152357476687 0.183101554813737 0.18358078032903 0.182865889193976 0.181377502038397 0.182144027997823 4 4 - 2517885 2518452 2518180.455 2517664 2519975 - gene protein_coding_gene FALSE TRUE AT4G04950.1 thioredoxin family protein Identical to Monothiol glutaredoxin-S17 (AtGrxS17) (GRXS17) [Arabidopsis Thaliana] (GB:Q9ZPH2); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G32580.1); similar to putative PKCq-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93692.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) 0.111714762520289 0.999263664228972 0.345582131373744 1 1.26480125070926 13.3288912640137 0.111714762520289 0.128961939773107
AT1G05900_at 5.34912312769024 5.34536926535673 5.46730446706502 5.05461526224598 6.00474149552501 5.2152339133519 6.37535007051772 5.76357143368452 5.63827934661173 5.63489707485712 5.55690839689126 5.39970128898897 5.71657180469983 5.67076675990303 5.29753826940088 5.80687681093819 5.55189349008223 5.67671000141066 5.53545400709675 0.169188406597759 0.162693101208677 0.170185393279382 0.181791400494124 0.172139067092593 0.178726451645234 0.172641097604018 0.166161443252923 0.166986414597620 0.163329005363404 0.169572907193996 0.164543721135333 0.182023884755361 0.165697603380286 0.165393502544565 0.16732115281172 0.172571816356697 0.170047324617209 0.165773095544795 1 1|0 +|/ 1787648 1789012 1788444.625 1786855 1789673 + gene protein_coding_gene FALSE TRUE AT1G05900.1|AT1G05900.2 endonuclease-related similar to endonuclease-related [Arabidopsis thaliana] (TAIR:AT2G31450.1); similar to HhH-GPD; Helix-hairpin-helix DNA-binding, class 1; Endonuclease III/Nth [Medicago truncatula] (GB:ABE85980.1); contains InterPro domain Helix-hairpin-helix motif; (InterPro:IPR000445); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain Endonuclease III, HhH; (InterPro:IPR004036); contains InterPro domain HhH-GPD; (InterPro:IPR003265)|similar to endonuclease-related [Arabidopsis thaliana] (TAIR:AT2G31450.1); similar to HhH-GPD; Helix-hairpin-helix DNA-binding, class 1; Endonuclease III/Nth [Medicago truncatula] (GB:ABE85980.1); contains InterPro domain Iron-sulfur cluster loop; (InterPro:IPR003651); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain Endonuclease III, HhH; (InterPro:IPR004036); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.145567823248903 -0.998930593733146 0.345734320044237 1 1.26449135434069 11.1656624605853 -0.145567823248903 0.187020920117030
AT1G48790_at 8.82731005617574 8.97496875270396 8.8575514799641 8.86439714116235 9.45246221867966 9.24945881145795 9.0697409493176 8.78662421639888 9.04052159775038 8.7881867039909 8.93412350551565 8.66974129436837 8.88613427209405 9.14987331868833 8.42920450265066 8.8301422788807 8.64349010262648 9.07016780230382 8.73785105549502 0.124949808350512 0.118678399216685 0.124447797949143 0.125599446972972 0.118514998053699 0.118791526776920 0.123516127074426 0.121353523987704 0.136784574872184 0.117810946007624 0.117279719720107 0.122035265791718 0.121914027838435 0.125131085119672 0.121095312335357 0.117279719720107 0.131623788947110 0.123481923061207 0.117690250596594 1 1|0 -|/ 18047690 18048952 18048247.333 18047378 18051325 - gene protein_coding_gene FALSE TRUE AT1G48790.1 mov34 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G16144.1); similar to Os01g0499300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043127.1); similar to ALM beta-like [Oryza sativa (japonica cultivar-group)] (GB:BAD72364.1); similar to Os01g0338200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042943.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555) 0.0811981340312706 0.99790593161534 0.346202832760575 1 1.26353848623348 17.8513789134257 0.0811981340312706 0.0654904841153036
AT3G45860_at 11.7931844472045 11.9132997418257 12.2845717163306 12.1145684135723 12.0938867549742 11.6497460773336 10.1571009641314 10.0125734801653 11.3859678204197 10.4070869054642 9.87322475804459 9.66611195531967 10.6475510297651 10.5816360153618 9.27973120583123 10.1377224957254 10.1436180835849 10.1270269406355 11.0325501631754 0.0996825533565028 0.0937621160765915 0.099844444097516 0.0972271344774996 0.0959433501988686 0.106671836942748 0.0949367465422692 0.0937332176368194 0.099716050176886 0.0985395061938985 0.101436765243510 0.0946929808921142 0.097997858099477 0.0983233006906393 0.0968386491051904 0.0933659088806524 0.100262550980326 0.103928043400773 0.0933659088806524 3 3 - 16874415 16875135 16874654.727 16874386 16877026 - gene protein_coding_gene FALSE TRUE AT3G45860.1 receptor-like protein kinase, putative similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23310.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23270.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23280.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0909315482006787 0.997651656114554 0.346319171008481 1 1.26330214393040 22.0018395028855 0.0909315482006787 0.0884913533651779
AT3G49500_at 5.71696058233901 6.1268929359603 5.3521668133232 4.67145229307944 5.4365381817543 5.36936553794592 4.88940254182731 4.80634434245745 6.13262005003476 6.12733735215616 6.47018383748566 6.52399544701802 5.93971423568259 6.24738946163171 6.12954228215023 6.2650719111364 5.44005823861312 6.6671241771932 6.54040710244093 0.231402740428993 0.227991611418555 0.226836399752215 0.236472241684731 0.216671106260238 0.225170961927345 0.227741814522884 0.229918293445167 0.219836600744693 0.223270151319342 0.216572135935230 0.214752341605811 0.219926430246746 0.224885320433055 0.220128345687788 0.214752341605811 0.241850046477003 0.232716655172411 0.227328467536427 3 3 - 18360178 18360707 18360455 18360178 18364190 - gene protein_coding_gene FALSE TRUE AT3G49500.1 RDR6 (RNA-DEPENDENT RNA POLYMERASE 6); nucleic acid binding Encodes RNA-dependent RNA polymerase. Involved in trans-acting siRNA and other siRNA biogenesis. Required for post-transcriptional gene silencing and natural virus resistance. similar to RDR1 (RNA-DEPENDENT RNA POLYMERASE 1), RNA-directed RNA polymerase/ nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G14790.1); similar to putative RNA-dependent RNA polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAC00725.1); similar to RNA-binding re (GB:ABE88477.1); similar to putative RNA-dependent RNA polymerase SDE1 [Nicotiana benthamiana] (GB:AAU21242.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA dependent RNA polymerase; (InterPro:IPR007855) -0.116961306733524 -0.997580089245613 0.346351920204671 1 1.26323563283394 11.5347269621231 -0.116961306733524 0.138749227132907
AT1G31812_at 12.4134645529857 12.5075315942878 12.6665346929437 12.6891197939719 12.7572247648312 12.6145182315013 12.9870728068636 13.0378290876326 12.7160298039495 12.9006034244770 13.0350623570458 12.9115820655884 13.0733668967243 13.0671210611370 12.6345158777048 13.0774885352717 13.1921217039814 12.9425957116930 12.7698669160223 0.0663720115337767 0.0673375927469898 0.0651375819227872 0.0685160652490374 0.0651845390349659 0.0665231350074928 0.0682320173355493 0.0703734315249389 0.0708829406947941 0.0647739033057609 0.0669182993233356 0.0646168090919542 0.0666435501843537 0.0690733757783574 0.0706239192015568 0.0664592962526303 0.0702828563923711 0.066376648690119 0.0646168090919542 1 1|0 -|/ 11411145 11411591 11411443 11410856 11412185 - gene protein_coding_gene FALSE TRUE AT1G31812.1 ACBP (ACYL-COA-BINDING PROTEIN); acyl-CoA binding Acyl-CoA-binding protein. Bind acyl-CoA esters and protect acyl-CoAs from degradation by microsomal acyl-hydrolases. Identical to Acyl-CoA-binding protein (ACBP) [Arabidopsis Thaliana] (GB:P57752); similar to ACBP1 (ACYL-COA BINDING PROTEIN) [Arabidopsis thaliana] (TAIR:AT5G53470.1); similar to Acyl-CoA-binding protein (ACBP) (GB:Q39315); contains InterPro domain Acyl-coA-binding protein, ACBP; (InterPro:IPR000582) 0.0708032941816534 0.997433146133172 0.346419169110105 1 1.26309908194527 25.6027778527737 0.0708032941816534 0.031101755544548
AT1G63010_at 8.49448227283847 8.7905041386755 8.60484912273875 8.58509544493155 8.70723069981507 8.40128609760044 8.63898789908846 8.53613903566534 7.65043326162532 8.27700762091162 8.21649710938554 8.09175201483435 7.9536703296236 7.97203257598812 7.91041463851033 8.24217438418616 8.10698052066281 8.16295149318977 7.68567351080303 0.143107790301724 0.147071588004719 0.143629815452113 0.144596869817820 0.148902083329524 0.142533950355568 0.146359359152350 0.142276653046177 0.156771506495209 0.143929562526685 0.144515733831964 0.142606024594714 0.143591686708855 0.153106038856499 0.142755571153730 0.141265542817506 0.15140406097202 0.157758110489120 0.141343787658108 1 1 - 23351655 23352499 23351951.636 23351382 23356311 - gene protein_coding_gene FALSE TRUE AT1G63010.1|AT1G63010.2|AT1G63010.3|AT1G63010.4 SPX (SYG1/Pho81/XPR1) domain-containing protein similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G11810.1); similar to SPX (SYG1/Pho81/XPR1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G22990.1); similar to SPX (SYG1/Pho81/XPR1) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD44792.1); similar to SPX, N-terminal; Major facilitator superfamily MFS_1 [Medicago truncatula] (GB:ABE83067.1); similar to SPX (SYG1/Pho81/XPR1) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD29241.1); contains InterPro domain SPX, N-terminal; (InterPro:IPR004331); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.0853040034443857 0.997080313435987 0.346580684203002 1 1.26277126609965 16.5713704711246 0.0853040034443857 0.075868068798614
AT3G53580_at 8.57568641115043 8.82525570908482 8.58435857177753 8.50143476722008 8.41224117367698 7.9922433084014 8.4130883201743 8.45625777019931 8.10087558220467 8.11057823063018 8.43520740887815 8.83409625956036 8.24187097158156 8.22036584696388 8.64554311675438 8.42615935479616 7.60633008657532 7.16477941591738 8.3311696933411 0.175051168718091 0.167249610727177 0.172444023032309 0.169731750248872 0.169344949531980 0.183956375915603 0.170041846260363 0.167249610727177 0.185197618974035 0.170781204295075 0.178409666232319 0.168558471431793 0.174800558065824 0.182209712361047 0.168886315179077 0.172523307608675 0.198253488634757 0.176131773448925 0.167249610727177 3 3|0 +|/ 19876735 19877858 19877347.1 19875742 19878112 + gene protein_coding_gene FALSE TRUE AT3G53580.1 diaminopimelate epimerase family protein similar to Diaminopimelate epimerase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22051.1); similar to Os12g0567200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067060.1); contains InterPro domain Diaminopimelate epimerase; (InterPro:IPR001653) -0.0895415209067338 -0.994472223234715 0.347776345330309 1 1.26035088204943 16.6589050338041 -0.0895415209067338 0.0860802148462119
AT1G69295_at 5.71445283021106 5.89986276779122 5.04934495870737 5.81225767429129 5.54667521668873 6.00360496270111 6.24928812016078 6.67441454239068 6.11549437132681 5.58412219085677 6.41141953450016 6.67897428661597 6.64438377146625 6.50170685749586 6.98351787260203 6.94979434671968 6.45696172071499 6.62546297131872 5.85453486916591 0.173616528099250 0.163853954342167 0.171979904586793 0.175322397951804 0.166138285216919 0.169900516874344 0.165743642016371 0.175340720431169 0.178586321311400 0.171289564011511 0.164182219785669 0.163376474527024 0.164882594695689 0.168321218582027 0.170514141421755 0.163376474527024 0.171434653321134 0.165255962667132 0.170431984056701 1 1|0 -|/ 26054248 26055131 26054579.2 26053860 26056230 - gene protein_coding_gene FALSE TRUE AT1G69295.1 beta-1,3-glucanase-related similar to beta-1,3-glucanase-related [Arabidopsis thaliana] (TAIR:AT1G26450.1); similar to putative glycosyl hydrolase family 17 protein [Medicago truncatula] (GB:ABE90942.1); contains InterPro domain X8; (InterPro:IPR012946) 0.136804998844033 0.9944517182351 0.347785758022094 1 1.26033187226293 12.1226933744323 0.136804998844033 0.173567005917336
AT2G28550_at 8.09514073044216 7.93966342551244 7.4058941498979 7.10562813837075 8.73617932194599 7.93143161887854 8.31835502491224 7.9337376172287 7.22550258763369 8.24292621494384 8.67003141221673 9.02363285127102 8.60950469449668 8.38432026940637 7.75329982617588 8.18276252890808 7.95364662022581 8.02714417494954 7.88761350250438 0.205086235374049 0.204553119867456 0.219936122773954 0.205451894132903 0.220528604825923 0.210558466117686 0.216149190915009 0.212272798641263 0.211711207277604 0.195837258335185 0.200444322106518 0.203797431167974 0.198343024192534 0.207864862393168 0.210450656552042 0.195837258335185 0.210499393540714 0.207530987853965 0.196660688635609 2 2 - 12233273 12234201 12233597.273 12233028 12235620 - gene protein_coding_gene FALSE TRUE AT2G28550.1|AT2G28550.2 TOE1 (TARGET OF EAT1 1); DNA binding / transcription factor similar to TOE2 (TARGET OF EAT1 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60120.1); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE87891.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.131627234964185 0.993443395487208 0.348248859350973 1 1.25939745060372 15.9886988695154 0.131627234964185 0.165072950161356
AT3G49560_at 9.40230171714252 9.33469380709383 9.18423818715402 9.05263282209353 9.48354831444581 8.98336863177482 9.56846152825065 9.4214074245391 8.86681525269647 8.9664001199394 8.92704291228872 9.02995485519009 8.97359068068597 8.9511851577422 9.06796545003166 8.8660329704398 8.60092097807523 8.82383747300195 8.67251084254287 0.129110893647267 0.132658105905633 0.133600524694606 0.130247357389085 0.132045455427622 0.134423226032998 0.130545762138770 0.134854208834117 0.131500041837265 0.130346355368714 0.132394637509772 0.125891164531992 0.127415158528503 0.131534235526487 0.128928816778829 0.128082380894261 0.142913468901157 0.139937218219149 0.141433546583862 3 3|0 +|/ 18381853 18382641 18382133.75 18381549 18383124 + gene protein_coding_gene FALSE TRUE AT3G49560.1 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein similar to mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein [Arabidopsis thaliana] (TAIR:AT5G24650.1); similar to H0502B11.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66528.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.092972446216886 -0.99295257208471 0.348474452343768 1 1.25894286610574 18.1739857447659 -0.092972446216886 0.0937846796811892
AT3G24070_at 6.13370921898386 5.54300887944697 6.05680139142109 5.73754936959687 6.97201693275927 6.20706032315562 6.28723261283814 6.07896671234203 6.47176904806149 6.46172649418952 5.3113989123986 5.52005255311229 6.2584792275071 6.0811398108014 5.59585201030667 6.4315605160455 6.27566577480963 5.89978511050865 6.37107168164335 0.18255393512694 0.177669155399280 0.182863289249235 0.189215475154984 0.187603055880026 0.194994990851594 0.182496627513669 0.179611997407488 0.186186709903229 0.198048584402918 0.194006502802153 0.184176630843755 0.180652372784168 0.194924120599996 0.185363441064873 0.185117823639043 0.193757509891231 0.189375907590943 0.188199703702465 3 3 + 8693864 8694307 8693995.636 8693092 8694716 + gene protein_coding_gene FALSE TRUE AT3G24070.1 zinc knuckle (CCHC-type) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G13450.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.140243176765713 -0.99234862274293 0.348752191592362 1 1.25838374715315 12.3053419204352 -0.140243176765713 0.179792223187748
AT2G40570_at 5.40097327651243 5.93454157167602 5.32023418038016 5.45662839211378 5.96786657082998 5.4873296871069 5.7733263557479 5.90226730856421 4.26411464188808 4.7719812132174 4.4435864192681 4.86934594742449 4.90362220858054 4.11434619028505 4.41892525713657 4.64345809692716 5.13694034674615 3.71855738601651 4.63654045909658 0.234102506533222 0.228496181623308 0.233154726305414 0.230013080421296 0.231684674432977 0.230002633438437 0.233829424073488 0.23210512687518 0.230812545775971 0.236463558707568 0.234054381634679 0.228496181623308 0.232888144713034 0.238434844014339 0.229025214891750 0.228496181623308 0.240619809095134 0.242337797277323 0.239411086244929 2 2 + 16949280 16950334 16949694.5 16947913 16950570 + gene protein_coding_gene FALSE TRUE AT2G40570.1|AT2G40570.2 initiator tRNA phosphoribosyl transferase family protein|transferase, transferring pentosyl groups similar to hypothetical protein DDBDRAFT_0187104 [Dictyostelium discoideum AX4] (GB:XP_637631.1); similar to Os06g0555500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057852.1); contains InterPro domain Initiator tRNA phosphoribosyl transferase; (InterPro:IPR007306) -0.110605063518358 -0.991885813488993 0.348965137367824 1 1.2579554702227 10.1997175026741 -0.110605063518358 0.128438738681085
AT4G13940_at 11.5852192287903 11.6760354781753 11.4343540770068 11.5522810131624 11.3685805107658 11.3869388245101 11.6871644863206 12.0395395485546 11.6606750422764 11.6697005875352 11.9601552692489 12.0718574173754 11.6581782279326 11.8367361332802 12.0680879229431 11.6428887067565 11.3663806123862 11.8337625409364 11.6348313951802 0.0601984277675487 0.0596118112719713 0.0653846637877438 0.0636811803300409 0.0610658662949155 0.0679184149951916 0.060286408471146 0.060223277924698 0.0691201425042366 0.0605874931216754 0.0595778252208587 0.0595778252208587 0.0603535512714296 0.0613054257319934 0.0595778252208587 0.0596515063564745 0.0664243361245093 0.0600280963397781 0.0634623250679396 4 4 + 8056098 8056635 8056366.818 8054856 8057176 + gene protein_coding_gene FALSE TRUE AT4G13940.1|AT4G13940.2|AT4G13940.3|AT4G13940.4 HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1); adenosylhomocysteinase|HOG1 (HOMOLOGY-DEPENDENT GENE SILENCING 1) Encodes a S-adenosyl-L-homocysteine hydrolase required for DNA methylation-dependent gene silencing. Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (Cytokinin binding protein CBP57) (GB:P68172); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P93253); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043)|Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to S-adenosyl-L-homocysteine hydrolase [Beta vulgaris] (GB:BAE07182.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); similar to S-adenosyl-L-homocysteine hydrolase [Hordeum vulgare subsp. vulgare] (GB:CAJ01706.1); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043)|Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:P93253); similar to wheat adenosylhomocysteinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAO72664.1); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043)|Identical to Adenosylhomocysteinase 1 (EC 3.3.1.1) (S-adenosyl-L-homocysteine hydrolase 1) (SAH hydrolase 1) (AdoHcyase 1) (HOMOLOGY-DEPENDENT GENE SILENCING 1 protein) (SAHH1) [Arabidopsis Thaliana] (GB:O23255;GB:O81847;GB:Q8LE20); similar to SAHH2 (S-ADENOSYL-L-HOMOCYSTEINE (SAH) HYDROLASE 2), adenosylhomocysteinase [Arabidopsis thaliana] (TAIR:AT3G23810.1); similar to Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase) (AdoHcyase) (GB:Q9SP37); contains InterPro domain S-adenosyl-L-homocysteine hydrolase; (InterPro:IPR000043) -0.0808821167860612 -0.990355144464247 0.349670119824317 1 1.25654011589469 23.3211765770047 -0.0808821167860612 0.0662732860864786
AT1G20330_at 8.64609976256856 8.88028650380499 8.5741783184689 8.75775120520664 8.80447207765453 8.91991904025362 9.15990611028532 9.49932525467679 9.59679863431217 8.98222534993089 10.2774256985449 9.9212154465902 10.0234811157291 9.86838790913538 9.73270556956454 9.76170778483473 8.90261976700978 9.61444830859768 9.34179100170655 0.105114367067596 0.108004175060239 0.111328175727052 0.108659774318606 0.104908398784602 0.109254266168957 0.106468648076534 0.106185765378731 0.110542446214735 0.10639350499906 0.104826542617766 0.102823819072706 0.106554211982224 0.106626931776304 0.105754875379367 0.106609763534323 0.122361877352164 0.108665162154252 0.103753800834506 1 1 - 7039104 7039521 7039352.273 7038680 7040149 - gene protein_coding_gene FALSE TRUE AT1G20330.1 SMT2 (STEROL METHYLTRANSFERASE 2) Encodes a sterol-C24-methyltransferases involved in sterol biosynthesis. Mutants display altered sterol composition, serrated petals and sepals and altered cotyledon vascular patterning as well as ectopic endoreduplication. This suggests that suppression of endoreduplication is important for petal morphogenesis and that normal sterol composition is required for this suppression. Identical to 24-methylenesterol C-methyltransferase 2 (EC 2.1.1.143) (24-sterol C- methyltransferase 2) (Sterol-C-methyltransferase 2) (SMT2) [Arabidopsis Thaliana] (GB:Q39227;GB:Q8H155;GB:Q8L7L3;GB:Q8LCB0;GB:Q9LN25); similar to SMT3 (S-adenosyl-methionine-sterol-C-methyltransferase 3), S-adenosylmethionine-dependent methyltransferase [Arabidopsis thaliana] (TAIR:AT1G76090.1); similar to S-adenosyl-methionine-sterol-C- methyltransferase [Nicotiana tabacum] (GB:AAB62808.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Sterol methyltransferase C-terminal; (InterPro:IPR013705) 0.0867431869564652 0.990187614597795 0.34974734435892 1 1.25638531011325 18.4400859234402 0.0867431869564652 0.0806285787253719
AT2G40880_at 11.1000903115943 11.3002731222936 11.4778018457022 11.4022973890381 11.6295005115138 11.3724948811590 11.6375694495825 11.4640386847317 11.7497954709339 11.5797491694122 11.9351093265063 11.8028519478563 11.6217642935484 11.7241336549826 11.3752893423511 11.8195182008724 11.5782869481163 11.4713548389356 11.4710007721654 0.116612444219456 0.114549714106797 0.114477129672257 0.121021040673656 0.111521462465982 0.117696797551840 0.111589080864356 0.113726267470480 0.112116982298533 0.109753955819767 0.116204344560483 0.110084243737815 0.110177976951441 0.111680804765276 0.115302231603699 0.111893568746881 0.112072606188690 0.112129224507053 0.109762466499367 2 2 + 17064551 17064978 17064802.818 17064480 17065200 + gene protein_coding_gene FALSE TRUE AT2G40880.1 FL3-27; cysteine protease inhibitor cysteine proteinase inhibitor homolog similar to cysteine protease inhibitor, putative / cystatin, putative [Arabidopsis thaliana] (TAIR:AT3G12490.2); similar to cysteine protease inhibitor [Populus tomentosa] (GB:ABK20187.1); contains InterPro domain Proteinase inhibitor I25, cystatin; (InterPro:IPR000010); contains InterPro domain Proteinase inhibitor I25A and I25B, type 2 and phytocystatins; (InterPro:IPR003243) 0.0804437648891851 0.989996995746879 0.349835227601506 1 1.25620919371779 23.0561184611102 0.0804437648891851 0.0651979630102451
AT1G19450_at 10.2756644949940 10.2639779546313 10.7331600769791 10.7970936211436 11.2959816849738 10.9632033455070 11.8103197520715 11.5446998602282 11.8863608008089 11.6993925212592 12.2325490570362 11.5816575686933 11.8144247583843 12.1083420235452 11.7000416452707 11.9334027229578 11.8002347457165 11.8529633523343 11.4645573304169 0.079270731197678 0.0743701384044774 0.0790094377925294 0.0770447199843497 0.0708560866869724 0.0767029194023497 0.0730663052841238 0.0767607860706752 0.0798091818202423 0.0727288979034333 0.0707121722704133 0.0706281007221334 0.0756962372229314 0.0707886180470519 0.0748538345220004 0.0706281007221334 0.0737050752301374 0.0775133589093002 0.0721633472377604 1 1|0 -|/ 6731707 6732728 6732118.25 6731425 6734873 - gene protein_coding_gene FALSE TRUE AT1G19450.1 integral membrane protein, putative / sugar transporter family protein Identical to Sugar transporter ERD6-like 4 [Arabidopsis Thaliana] (GB:Q93YP9;GB:Q9LN48); similar to integral membrane protein, putative [Arabidopsis thaliana] (TAIR:AT1G75220.1); similar to 10A19I.3 [Oryza sativa (japonica cultivar-group)] (GB:AAD39600.1); similar to Os05g0579000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056416.1); similar to integral membrane protein [Beta vulgaris] (GB:AAB53155.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.0841046333751125 0.989522137003968 0.350054229571266 1 1.25577057717997 22.7412070330180 0.0841046333751125 0.0745380455453266
AT3G15810_at 9.65987614652534 9.87348837636868 10.1973551519651 10.3803316437790 10.4356980324395 10.0285592218292 10.3230335663152 10.2592173254846 8.97568246156185 9.38189593106457 9.10758531774109 9.05604073076263 9.43084531832733 9.53206286679535 8.6364571818173 9.54836568749999 9.4663446715261 9.12510409167651 9.51545819305442 0.150191593458181 0.139052272191504 0.141424859931920 0.143721499339813 0.139397624660139 0.148389205524102 0.139235250195139 0.139831439021540 0.1532550065762 0.139336817234408 0.151052803487335 0.139951578043314 0.135558905421016 0.140270821530281 0.156114345771999 0.138075780093311 0.151021147099133 0.143293817128440 0.139173859280542 3 3 - 5348071 5349040 5348504.727 5347833 5349295 - gene protein_coding_gene FALSE TRUE AT3G15810.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80120.1); similar to Os01g0771000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044381.1); similar to hypothetical protein-like protein [Sorghum bicolor] (GB:AAO16702.1); similar to Os05g0510100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056006.1); contains InterPro domain Protein of unknown function DUF567; (InterPro:IPR007612) 0.08921034843553 0.98947025078126 0.350078165433751 1 1.25572266092787 19.4091263973359 0.08921034843553 0.0863445844215937
AT1G16340_at 5.19627828274511 5.28309442488318 4.78655777161711 4.87060773888806 5.70255208857565 5.07031804242441 5.51834592607092 5.19587101436444 4.90343819346978 5.44953141768169 5.50140563150438 5.9896931629779 5.49331088973014 5.43401467246206 6.51258069576208 5.3572710378096 5.31651999877772 5.25246050373191 5.24642796191979 0.202510851789897 0.199630948892796 0.205393644935817 0.206110714366709 0.201188940766081 0.204890507830779 0.19832376475088 0.204442528430078 0.204135702563528 0.200904584710882 0.198439489783907 0.196312255318277 0.199672060983731 0.20455640665216 0.200802356285136 0.196312255318277 0.207067803271842 0.200600665892663 0.196727439758083 1 1|0 -|/ 5588130 5589422 5588696.714 5587806 5590645 - gene protein_coding_gene FALSE TRUE AT1G16340.1|AT1G16340.2|AT1G16340.3 ATKDSA2/ATKSDA; 3-deoxy-8-phosphooctulonate synthase|ATKDSA2/ATKSDA Encodes a protein with putative 3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase activity. This gene share a very high sequence homology with its homologue AtkdsA1 (AT1G79500). similar to AtkdsA1 (Arabidopsis thaliana KDO-8-phosphate synthase A1), 3-deoxy-8-phosphooctulonate synthase [Arabidopsis thaliana] (TAIR:AT1G79500.4); similar to 2-dehydro-3-deoxyphosphooctonate aldolase (Phospho-2-dehydro-3-deoxyoctonate aldolase) (3-deoxy-D-manno-octulosonic acid 8-phosphate synthetase) (KDO-8-phosphate synthetase) (KDO 8-P synthase) (KDOPS) (GB:O50044); contains InterPro domain 2-dehydro-3-deoxyphosphooctonate aldolase; (InterPro:IPR006269); contains InterPro domain DAHP synthetase I/KDSA; (InterPro:IPR006218) 0.108234690715557 0.989258753760665 0.350175744800390 1 1.25552736637361 10.6064312937552 0.108234690715557 0.124588709498607
ATCG00800_at 11.7277153514611 11.8749203280655 11.5765377866810 11.360454624577 11.8407523039609 11.2427845402611 12.2857557851275 12.2680856144118 12.4040806183176 12.4036420666529 13.0288908099639 13.2939806481773 12.3100701064054 12.6740279280385 12.8564778627671 12.7987740997226 11.962963974853 12.3761387249695 12.1908779244837 0.117740465794974 0.116882611160442 0.126045485941692 0.117413725467609 0.116882611160442 0.126598960548454 0.122491697728258 0.118428165362974 0.122422838218935 0.123630017193049 0.116882611160442 0.117187117849885 0.117525268074606 0.126417775227198 0.119602272785796 0.116882611160442 0.122350990913204 0.120917402563211 0.119910210658733 C C - 82879 83292 83081.545 82826 83482 - gene protein_coding_gene FALSE TRUE ATCG00800.1 encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex Identical to Chloroplast 30S ribosomal protein S3 (rps3) [Arabidopsis Thaliana] (GB:P56798); similar to ribosomal protein S3 [Gossypium hirsutum] (GB:YP_538974.1); contains InterPro domain Ribosomal protein S3, C-terminal; (InterPro:IPR001351); contains InterPro domain KH, type 2; (InterPro:IPR004044); contains InterPro domain Ribosomal protein S3, N-terminal; (InterPro:IPR008282); contains InterPro domain Bacterial ribosomal protein S3; (InterPro:IPR005704); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019) -0.102094153176170 -0.988953473775548 0.350316629339434 1 1.25524553062691 24.2698919864083 -0.102094153176170 0.112982156287861
AT4G19960_at 9.09304934484177 9.21959634234092 9.34895983728643 9.08104589539495 9.29055150092399 8.82154556696566 9.2294457251865 9.11965449564864 7.46713412335708 8.31491987679665 7.43024074715312 8.21583624180425 8.47710864556014 8.29022364098103 6.28079137318413 8.54038627853875 8.69140282647737 8.13981478150853 7.58574092236015 0.149497091338046 0.146819235151368 0.14862802255313 0.159343642053599 0.142883091054615 0.151788432520289 0.145829052887890 0.146057133049883 0.167530467785029 0.149150379208647 0.162698611432584 0.148983697221484 0.150745081322058 0.147498600622192 0.181830979738350 0.142883091054615 0.160287916547056 0.154827451172228 0.170042743604349 4 0|4 /|+ 10816508 10816957 10816643.3 10813595 10817060 + gene protein_coding_gene FALSE TRUE AT4G19960.1 potassium ion transporter similar to KUP11 (K+ uptake permease 11), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT2G35060.1); similar to KUP10 (K+ transporter 10), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G31120.1); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to Putative potassium transporter 12 (OsHAK12) (GB:Q8VXB1); similar to putative potasium transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD21001.1); similar to Putative potassium transporter 9 (AtPOT9) (GB:O49423); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.0945249079339592 0.988746725250715 0.35041206652862 1 1.25505469792254 17.0492263591097 0.0945249079339592 0.0978658478663934
AT3G46220_at 6.90315505327307 7.44384178648492 6.86550537086671 7.08398849278777 7.28629369801257 6.88195431555654 7.18998669253328 6.67495683649067 5.78791412562471 5.96028038529252 5.60017539069469 6.09044196879366 5.42548261160288 5.89189514827677 5.21355809080038 5.6269749128762 6.37685586903154 5.78926427573533 6.17567724226037 0.257763396019692 0.252164284075387 0.263997664224065 0.259452440655084 0.254248983390432 0.260287938263947 0.252164284075387 0.255429962982255 0.285959046736690 0.252164284075387 0.258693147569396 0.252164284075387 0.255408872071099 0.267663978447602 0.262870229011121 0.26246343080029 0.268101322056056 0.260953144251692 0.252164284075387 3 3|0 +|/ 16993988 16994900 16994487.4 16990060 16995162 + gene protein_coding_gene FALSE TRUE AT3G46220.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80013.1) -0.123171253569513 -0.98795418503228 0.350778092220752 1 1.25432345597342 12.9044377563518 -0.123171253569513 0.151738756866950
AT2G43640_at 7.26337099537533 7.6648376374323 7.12106908030854 6.85653977548355 7.14892408760296 6.67951133664771 6.81629997904058 6.78917530485333 6.49875467056062 6.4442258922917 6.64462745930508 6.83602274616878 6.24254138716143 6.636518457852 6.7585356491332 6.24181351968735 6.16502689961324 6.2938278574699 6.56556257355169 0.221754328073191 0.195722149538057 0.196589678274097 0.199390341927905 0.207355326792717 0.217345390184315 0.201879858175943 0.209113337159050 0.230444024840014 0.202667122206777 0.208368747582733 0.201574990555022 0.206332252059115 0.203371413776341 0.204851455558084 0.195722149538057 0.202071838763999 0.198298230707784 0.213280015942697 2 2|0 -|/ 18104701 18105462 18105089.111 18104483 18106207 - gene protein_coding_gene FALSE TRUE AT2G43640.1|AT2G43640.2 signal recognition particle 14 kDa family protein / SRP14 family protein Identical to Signal recognition particle 14 kDa protein (SRP14) (SRP14) [Arabidopsis Thaliana] (GB:O04421;GB:O22839); similar to PREDICTED: similar to signal recognition particle 14kDa (homologous Alu RNA binding protein) isoform 1 [Macaca mulatta] (GB:XP_001092939.1); similar to Os04g0623700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053927.1); contains InterPro domain Signal recognition particle, 14 kDa protein; (InterPro:IPR003210); contains InterPro domain Signal recognition particle, 9 kDa and 14 kDa protein; (InterPro:IPR009018) -0.103696687125248 -0.987447135970337 0.351012417840092 1 1.25385586327386 13.5325720041848 -0.103696687125248 0.116376565396354
AT1G10180_at 5.96142717740029 6.80023942648719 5.02368188459387 5.57608211290592 5.945382246029 6.52329334092104 5.23181704741165 6.53642579369768 6.02723036161591 5.74715003665024 6.00656378978718 6.51802018028267 5.96882445417067 5.79626744016732 6.08371573792399 5.80165152719299 5.15807325883193 5.166303119406 5.86427904175305 0.239040074384418 0.239146046460921 0.248242495227402 0.239040074384418 0.248043375082573 0.241808363686964 0.252615064541608 0.244973641826215 0.243265112115025 0.239040074384418 0.241314101978386 0.241635534064206 0.242685062424792 0.246831700669605 0.246083082826988 0.240302961131231 0.250931536675186 0.241073838391114 0.244392544317981 1 1|0 -|/ 3338386 3339180 3338640.8 3338305 3341610 - gene protein_coding_gene FALSE TRUE AT1G10180.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49830.1); similar to Os07g0568000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060025.1); similar to AT5g49830/K21G20_4 [Medicago truncatula] (GB:ABE86338.1); contains domain SUBFAMILY NOT NAMED (PTHR21426:SF2); contains domain FAMILY NOT NAMED (PTHR21426) -0.216246586669731 -0.98699662678935 0.351220713060916 1 1.25344056738589 11.7957839212525 -0.216246586669731 0.30196611799166
AT2G14910_at 11.4349503876599 11.6007673242735 11.9442459278772 11.8297499635157 12.1913227133875 12.0712204079174 11.9618569974031 12.0368037399162 12.1292226003159 11.8174637575005 12.1360033147064 11.5508350295461 11.9155811732584 11.8104753648465 11.5924843039341 12.0538429927987 11.8529384278566 12.0547597926174 11.9812110955569 0.0652409537943258 0.0652409537943258 0.0652409537943258 0.068143275993029 0.0652409537943258 0.0678996465637336 0.067051805390653 0.0653554955370504 0.074463850636426 0.0655192433140297 0.0660659529069848 0.0658385434289876 0.0675039101068949 0.0687496767472363 0.0678667218802203 0.065877692658333 0.0712983857722595 0.0686876560271014 0.0669797920505013 2 2 - 6414041 6414725 6414387.545 6413558 6416234 - gene protein_coding_gene FALSE TRUE AT2G14910.1|AT2G14910.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14970.1); similar to seed maturation protein PM23 [Glycine max] (GB:AAF21309.1) 0.0727196865078561 0.985653095198687 0.351842453396762 1 1.25220292628387 23.8072801166121 0.0727196865078561 0.0426172049210543
AT3G21360_at 5.65270237949779 5.88274479298292 6.10441364834559 6.2305995237841 6.52740226151392 6.2782095846941 6.73196375838044 6.96919881872122 5.87939467434485 6.49350282241132 6.35236625378982 6.32559141263132 6.72235775965699 6.34900198533607 6.14987487913185 6.79962054034725 6.76486470769018 6.09126578841756 6.38485995953207 0.17108221649146 0.173616458601842 0.171579890869162 0.172299568065037 0.171525529213468 0.173968465033824 0.177579369918609 0.181298804677826 0.181769989139474 0.165723025382976 0.177931246132451 0.174166271804879 0.169924711936614 0.174040851899003 0.170304191615918 0.173195814299874 0.170094374698301 0.175686302771838 0.165116894214545 3 3 + 7523523 7524014 7523800.182 7522810 7524586 + gene protein_coding_gene FALSE TRUE AT3G21360.1 oxidoreductase Identical to Clavaminate synthase-like protein At3g21360 (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9LIG0); similar to SyrP-like protein [Marinomonas sp. MED121] (GB:ZP_01078296.1); similar to Os01g0190000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042262.1); contains InterPro domain Taurine catabolism dioxygenase TauD/TfdA; (InterPro:IPR003819) 0.0838929571506086 0.985379099655032 0.351969350580567 1 1.25195068678935 12.6456312133089 0.0838929571506086 0.074878865523034
AT1G78200_at 9.12947989952486 9.19267454103178 9.64888072859816 9.566113672602 9.7794351326533 9.10606617872869 9.60193647813034 9.3186015429378 8.55491796033186 8.96139537399447 8.97636343634762 8.84682702216768 8.98171638968538 9.01037532997783 8.31497788786385 8.97750490080411 8.8701494619145 8.70515793542322 8.97659144267213 0.165094689253011 0.166435752033334 0.169808653653853 0.171215270427552 0.170605521914652 0.184006285691666 0.167915612503132 0.170681962104307 0.181208975740449 0.170393173627178 0.175128901895428 0.165094689253011 0.168360704675453 0.173627944684090 0.193790293136586 0.165274262737136 0.198638916214123 0.184321715798923 0.171486661705013 1 1 + 29425809 29426513 29426135.727 29425146 29426757 + gene protein_coding_gene FALSE TRUE AT1G78200.1|AT1G78200.2 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT1G22280.1); similar to H0815C01.7 [Oryza sativa (indica cultivar-group)] (GB:CAH67186.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.109433299631442 0.984937931956426 0.352173743424202 1 1.25154466382977 18.2510746740371 0.109433299631442 0.127703130586594
AT4G36530_at 10.2867811849739 10.4359414897851 10.5231618101781 10.4420834791556 10.5722143192844 10.5216173239329 11.0958501493148 10.9751754439023 10.2361062761284 10.5777636765448 10.5765868052934 10.6293679507090 10.6757834709304 10.7448496313555 10.6168565346778 11.0219492253369 10.9448715540873 10.7128602447438 10.4291035315645 0.0886854180388958 0.0876205944178341 0.0891569504478214 0.0882421101824906 0.0901139853525285 0.0909499613857245 0.0923710346981772 0.0932967279711863 0.095454599730701 0.0876205944178341 0.090227351333537 0.0878969195425617 0.0890801504059483 0.0921054801266699 0.089004586260775 0.0876205944178341 0.0952457935687227 0.0909394216657483 0.0882233904509586 4 4 - 17240137 17240855 17240461.455 17239961 17241940 - gene protein_coding_gene FALSE TRUE AT4G36530.1|AT4G36530.2 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT5G19850.1); similar to hydrolase, alpha/beta fold family [Synechococcus sp. JA-3-3Ab] (GB:YP_473970.1); similar to Os02g0705100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047865.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Epoxide hydrolase; (InterPro:IPR000639); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) 0.0711991742698002 0.984185293002578 0.3525226465002 1 1.25085230919874 21.1839607360097 0.0711991742698002 0.0370938676533665
AT1G60660_at 6.53410448451404 6.89108344136732 6.01365755185141 6.04299757651104 6.33961130138851 6.60460637002478 6.68914462383807 6.74550383704954 5.73150535692974 6.24594398663236 7.02665210548537 7.42311849201373 6.64357216986874 6.91279497034536 7.16188548468846 6.4822081939143 6.1112080926465 6.54718020257706 6.48512010308616 0.191658816032003 0.192080631007038 0.200596632177659 0.185631805795907 0.189103682677249 0.195995539218594 0.185350474363744 0.193941862242316 0.206650460499775 0.184110995134280 0.192261668745880 0.186731687117012 0.188307922135524 0.194787580703551 0.193419263863844 0.186903013633798 0.20281877698279 0.193019611642969 0.186321750956290 1 1 - 22346256 22346582 22346409.364 22346079 22346679 - gene protein_coding_gene FALSE TRUE AT1G60660.1 B5 #5 (cytochrome b5 family protein #5); heme binding / transition metal ion binding member of Cytochromes b5 similar to B5 #6 (cytochrome b5 family protein #6), heme binding / transition metal ion binding [Arabidopsis thaliana] (TAIR:AT1G26340.1); similar to hypothetical protein LOC405812 [Danio rerio] (GB:NP_998041.1); similar to Os08g0386300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061708.1); contains InterPro domain Cytochrome b5; (InterPro:IPR001199) 0.0848233758223571 0.982416678148372 0.353343549611842 1 1.2492269788615 12.9539722880640 0.0848233758223571 0.0777193793531366
AT1G23360_at 8.22113468144903 7.91510389566603 7.63017677545461 7.00129948788189 8.96997211514537 7.94950601963629 8.17726790451963 7.48070590006006 7.4569642496624 8.22138218987316 7.78391403524524 8.14289016026745 7.44946426612663 7.95579561576857 8.17220367070539 7.90873058530806 6.28511944332474 7.77656590088563 8.2680550816457 0.215226057156427 0.214463458015474 0.22863092779955 0.24795425082357 0.213649392404456 0.222114149379362 0.224883408371606 0.212110676519169 0.255352903466894 0.217281853459015 0.210722013216046 0.212985259897352 0.221021632186024 0.212807423638123 0.212242404325122 0.210722013216046 0.24815149635655 0.222240274183243 0.210722013216046 1 1|0 -|/ 8295446 8296431 8295854.5 8295174 8296912 - gene protein_coding_gene FALSE TRUE AT1G23360.1|AT1G23360.2|AT1G23360.3 UbiE/COQ5 methyltransferase family protein similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT5G57300.2); similar to Fgenesh protein 2 [Beta vulgaris] (GB:ABD83274.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain UbiE/COQ5 methyltransferase; (InterPro:IPR004033); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601)|similar to methyltransferase [Arabidopsis thaliana] (TAIR:AT5G57300.2); similar to OSJNBb0002J11.21 [Oryza sativa (japonica cultivar-group)] (GB:CAE05694.2); similar to Fgenesh protein 2 [Beta vulgaris] (GB:ABD83274.1); similar to OSJNBa0043L24.12 [Oryza sativa (japonica cultivar-group)] (GB:CAE04724.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain UbiE/COQ5 methyltransferase; (InterPro:IPR004033); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.179306438291969 -0.98220357844642 0.35344255661848 1 1.2490312972937 15.7513804975255 -0.179306438291969 0.245694426004401
AT3G26220_at 7.78374656071245 8.19640626397852 7.853353649211 8.32946800718686 8.26687059377652 7.95842184967277 5.1364891899941 5.71271689729411 6.35854401388321 5.65001158458748 3.99371245112053 4.02063674980433 5.0781542695187 4.6273355488039 3.05128965594445 5.11595485800236 5.69049380285861 4.21663534759339 6.3513925048134 0.260549713487574 0.260872976988987 0.259926583845195 0.259989946727827 0.25537509908229 0.263464722750510 0.253444500835758 0.254179788682212 0.2538825384728 0.253272160566399 0.267947903770089 0.266152819409532 0.255547270535765 0.260360745197045 0.272778475538143 0.255243004005371 0.26505508337892 0.263881235561781 0.253539317232724 3 3 - 9597447 9597976 9597649 9597314 9599070 - gene protein_coding_gene FALSE TRUE AT3G26220.1 CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3); oxygen binding cytochrome P450 monooxygenase Identical to Cytochrome P450 71B3 (EC 1.14.-.-) (CYP71B3) [Arabidopsis Thaliana] (GB:O65785;GB:Q8W4B9;GB:Q9LTL9); similar to CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26280.1); similar to CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26270.1); similar to CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26230.1); similar to Cytochrome P450 71B27 (GB:Q9SAE1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.125508659335962 -0.982081804839122 0.353499142482598 1 1.24891949196085 12.7018137697535 -0.125508659335962 0.157103891582603
AT1G80860_at 6.57952564502121 6.67126051467632 6.25986021682736 6.21014939871683 7.15317597119641 6.66606370570594 7.3906111876649 6.93149572467957 6.73317277715835 6.57994977591563 6.29792101252133 6.89544335526998 6.5962027364302 6.47743923039669 7.09633894704691 6.57093002600101 6.76723069692204 6.83358686570109 6.42109943827469 0.187061295063013 0.184512257527702 0.182453136411631 0.182965269003997 0.181768494849308 0.185765670719827 0.181435484522480 0.183431304006128 0.191590888235408 0.183666843227011 0.184839999800074 0.185740208292163 0.182283973180778 0.188677485461003 0.183486245305487 0.187285481674523 0.200369174076157 0.180535633272883 0.182129327217600 1 1|0 -|/ 30393329 30394136 30393818.8 30392927 30394194 - gene protein_coding_gene FALSE TRUE AT1G80860.1|AT1G80860.2 N-methyltransferase similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD19687.1); contains InterPro domain Phospholipid methyltransferase; (InterPro:IPR007318) -0.103549166614463 -0.981787610029053 0.353635877210118 1 1.24864942427497 13.3677480985123 -0.103549166614463 0.117237582874061
AT3G51610_at 7.90432467779867 7.94878178890004 7.8078289122967 7.87642491734849 8.1575372211705 7.72665207980705 7.81721831152978 7.62473670434137 7.27793740816078 7.03973815526613 6.84986119696273 6.9121415011787 7.0781839977641 6.72186755939063 7.18624681433707 6.87880500833698 6.9166874312189 6.93961676533479 7.21552752632276 0.161759345869049 0.160044576944192 0.163783505536779 0.157042767840289 0.154703963179123 0.168047911203102 0.155775358244799 0.158945854433403 0.179254115947216 0.161761034066098 0.154332471256946 0.157331644000272 0.157833389390667 0.166840123121282 0.153358667103909 0.162972339929637 0.159786194766506 0.158007877176808 0.161618347577651 3 3|0 -|/ 19150862 19152841 19151819.167 19150531 19153064 - gene protein_coding_gene FALSE TRUE AT3G51610.1 similar to Os05g0168400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054754.1) -0.0869813334605896 -0.981733284351378 0.353661130825790 1 1.24859956078725 14.9145184004318 -0.0869813334605896 0.0828845164704414
AT4G16060_at 6.36261567668025 7.02776619694239 6.17582104138557 6.82819136494487 6.30382666614143 6.62683951842307 6.04460996119111 6.59120343939804 6.72446152566906 6.94646443128102 7.38858389991159 7.30569589070027 6.64470574265039 7.16918251909594 7.67151911593926 7.08606928436141 6.76611537133584 6.9052312553777 6.72468043538414 0.21798664129128 0.212299849682676 0.201635882854406 0.205633660343154 0.202443030634530 0.214879262566730 0.206288963320438 0.201581518773948 0.213013144242860 0.214749563290960 0.213466681413777 0.201581518773948 0.202240111316455 0.217731258812857 0.208625345390906 0.207790925070515 0.211327089602239 0.204364026959771 0.210905713207645 4 4|0 +|/ 9094779 9096121 9095454.875 9094415 9096293 + gene protein_coding_gene FALSE TRUE AT4G16060.1 similar to Os05g0358400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055302.1); similar to hypothetical protein MED92_03118 [Oceanospirillum sp. MED92] (GB:ZP_01165985.1) 0.147861624990467 0.981237958393323 0.353891448422863 1 1.24814501907744 13.4529459076548 0.147861624990467 0.195108215488791
AT1G68010_at 12.6894003244017 12.9588643813644 13.0831104936890 13.1163416769772 13.0230886765127 13.1066641003864 13.5951916628848 13.6622267103853 13.4163661451950 13.7535595825799 13.6158985228666 13.5196583282588 13.7121230743785 13.4123320353569 13.4174591932081 13.8406987854797 13.7043031758143 13.6172649169440 13.6603385647467 0.0737160648539848 0.0738273434700516 0.0743932656580997 0.0743964939447853 0.0753875160741246 0.0770302156760285 0.0743528061293846 0.0801752635583322 0.0906170060667424 0.0751759549830345 0.0765116156028636 0.0782645107692788 0.0737160648539848 0.079868143039598 0.0775168946423008 0.0737160648539848 0.0834534172592382 0.0791239656867258 0.075806517770256 1 1|0 +|/ 25498115 25499093 25498673.3 25496881 25499651 + gene protein_coding_gene FALSE TRUE AT1G68010.1 HPR (Hydroxypyruvate reductase); NAD binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor Encodes hydroxypyruvate reductase. similar to EDA9 (embryo sac development arrest 9), NAD binding / amino acid binding / cofactor binding / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor / phosphoglycerate dehydrogenase [Arabidopsis thaliana] (TAIR:AT4G34200.1); similar to hydroxypyruvate reductase [Bruguiera gymnorrhiza] (GB:BAB44155.1); similar to hydroxypyruvate reductase [Solenostemon scutellarioides] (GB:ABL10359.1); similar to putative NADH-dependent hydroxypyruvate reductase [Glycine max] (GB:AAO73866.1); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) -0.0746201881682569 -0.980375701671263 0.35429265035353 1 1.24735418602900 26.7618886790979 -0.0746201881682569 0.0505111372304409
AT3G12640_at 6.06831237934205 6.13056882171184 6.00045203681201 6.31586619356235 6.10897281476201 5.94034075468381 5.51470429804423 5.91098407337136 5.13728635880734 5.50118892169727 5.7286152615098 5.3794493153015 5.41834236997887 5.62075574125759 4.92126489501417 5.67373437505138 5.99340427736753 4.93494636478256 5.74638614951508 0.206215416294066 0.203970345572800 0.204732776142919 0.202957686052433 0.208135433486561 0.213040574052344 0.206578774259156 0.210732566894797 0.210769846387134 0.209795502644048 0.202957686052433 0.206460335658471 0.202957686052433 0.208922872485611 0.206572234931943 0.202957686052433 0.210920595006160 0.213994687225089 0.207296868819463 3 0|3 /|+ 4016888 4017621 4017366.3 4014220 4017876 + gene protein_coding_gene FALSE TRUE AT3G12640.1 RNA binding / nucleic acid binding similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G24350.1); similar to B0806H07.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67273.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0912295775986868 0.97821251099053 0.355300667267493 1 1.24537256926090 11.4589924473893 0.0912295775986868 0.0930056344831833
AT3G50750_at 8.71500382420459 8.71417905574511 8.32104675004269 8.51086274639864 9.3692850333986 9.06191568712734 9.0724526114183 8.74981726000759 9.08307353452227 8.4689099370562 8.82175739874398 8.40224025617163 8.89155420687334 8.67845924956393 8.6347879927302 8.84798361382612 8.30400064887436 8.81828656561332 9.0038801817578 0.126046725058646 0.123247152710825 0.133051477413176 0.126285520119293 0.125108892183345 0.131983720674585 0.129088127524494 0.127709098178737 0.147037012132729 0.13209678727948 0.127789678152250 0.125204835119552 0.127188159354702 0.142436744880291 0.123257008989945 0.123247152710825 0.145746875428067 0.127402791394747 0.129326151021335 3 3 - 18873143 18873677 18873450.818 18872820 18874215 - gene protein_coding_gene FALSE TRUE AT3G50750.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 1 (BEH1) [Arabidopsis Thaliana] (GB:Q9S7F3); similar to BZR1 (BRASSINAZOLE-RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT1G75080.2); similar to Os07g0580500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060100.1); similar to mature anther-specific protein LAT61 [Lycopersicon esculentum] (GB:AAK71662.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) -0.087078221582281 -0.978210378008601 0.355301662266047 1 1.24537061700473 17.5777395173737 -0.087078221582281 0.0838199831019883
AT1G14330_at 7.23114149123376 7.33867956883192 7.47034590095553 7.60419383082354 6.3966857340037 6.91050608837024 6.36857362818274 6.83252983715691 7.28593045662348 7.13367423794365 7.55488327095113 7.13296691963773 7.16332362849416 7.29070588162586 7.21147540066583 7.15961674855156 7.07338750689647 7.42904239113164 7.15717934786291 0.183155535650142 0.177102498616311 0.184287663177759 0.192286805995770 0.181711313151211 0.178095577894217 0.184837621257516 0.179345942027715 0.177786674415067 0.187281775468394 0.182879602212505 0.176351469030324 0.174782155812836 0.182450777356342 0.172668349660841 0.175439957615401 0.184325809954353 0.172668349660841 0.185456402183634 1 1 - 4890371 4890909 4890642.636 4890113 4892246 - gene protein_coding_gene FALSE TRUE AT1G14330.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT2G02870.3); similar to kelch repeat-containing F-box family protein, putative [Solanum demissum] (GB:AAT40540.1); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.106182814102266 0.976082426779697 0.356295353155645 1 1.24342462316367 14.2411752929303 0.106182814102266 0.123433770080892
AT3G22980_at 5.36204748856158 5.77338507280412 5.19904213363593 5.31480538459981 5.33715813251721 5.93551579540728 4.81618207772594 5.28194866014197 5.49409578433684 5.36207406326914 4.93400969207364 4.99377961629473 4.80086251507212 4.63953825877316 4.87995341093092 5.13986758421207 5.1409774962233 5.03434115803392 5.12087456926981 0.206217218263595 0.198618615901219 0.202433996997904 0.200709048262970 0.200881279311386 0.201139998609271 0.208083179858374 0.199713452010356 0.20767898829928 0.200438123419051 0.198618615901219 0.200340188032269 0.203667036411914 0.200803627646805 0.210160291277674 0.198618615901219 0.212908815758888 0.209197488075670 0.202171566985366 3 3 - 8160350 8160819 8160596.364 8160163 8163323 - gene protein_coding_gene FALSE TRUE AT3G22980.1 elongation factor Tu family protein similar to LOS1 (Low expression of osmotically responsive genes 1), translation elongation factor/ translation factor, nucleic acid binding [Arabidopsis thaliana] (TAIR:AT1G56070.1); similar to hypothetical protein SPCC553.08c [Schizosaccharomyces pombe 972h-] (GB:NP_587766.1); similar to Mitochondrial elongation factor (ISS) [Ostreococcus tauri] (GB:CAL56720.1); similar to Elongation factor Tu, domain 2; Translation elongation factor G [Medicago truncatula] (GB:ABE84294.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Elongation factor G, III and V; (InterPro:IPR009022); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor G, domain IV; (InterPro:IPR005517); contains InterPro domain Elongation factor G, C-terminal; (InterPro:IPR000640); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.121012859554271 -0.975692036537842 0.356477879366351 1 1.2430679743228 10.5130594375461 -0.121012859554271 0.150624192736153
AT3G30300_at 7.05614831641932 7.02426509968777 6.75226177477818 6.09756294633281 6.94015946883912 7.06211729522553 6.98848699806935 7.2142467448402 7.53557526896318 7.08293943144146 8.14069668514883 8.27711902933174 7.7523450529989 7.9813146560051 8.0569416475577 8.11047982666153 7.2188432521228 7.61867696120662 7.3604074942157 0.200000147956370 0.204942628835358 0.209079586975094 0.214788635982003 0.209177836334772 0.205931730853102 0.216293442964524 0.199664794255168 0.214409882012279 0.203509487198906 0.203143035722383 0.202792892536826 0.199590958647710 0.207738148947772 0.206384988462514 0.202917340964461 0.209121704233147 0.207137768724452 0.213793002204616 3 3 - 11923992 11924496 11924229.545 11923677 11926893 - gene protein_coding_gene FALSE TRUE AT3G30300.1 similar to EDA30 (embryo sac development arrest 30) [Arabidopsis thaliana] (TAIR:AT3G03810.1); similar to putative auxin-independent growth promoter protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85168.1); similar to Os05g0132500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054559.1); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) 0.105241661106063 0.975253784215317 0.356682866675317 1 1.24266773312387 14.502335849067 0.105241661106063 0.121814783273368
AT4G32030_at 6.07764243618603 6.45852340145248 5.41744600477072 5.9886278672371 6.23781293803358 6.77620803034418 5.8190832660547 6.47302016379321 4.99810485154906 5.82909004359733 6.01212285582236 5.72206771932057 6.55436564989366 5.79818629512966 5.91221869766671 6.19452360826631 6.15177311290656 5.29658399459687 5.87369724252258 0.218857331428251 0.219307621375698 0.223038016423538 0.219069926139792 0.218429152143971 0.232747809540972 0.224985385379497 0.220574637584401 0.238821806634713 0.225048304257388 0.220347824066943 0.228443232544019 0.217350138121975 0.224643065124724 0.216332683764813 0.216332683764813 0.218379025252770 0.229561477496353 0.218291312470813 4 4 + 15491071 15492965 15491733.636 15490746 15493429 + gene protein_coding_gene FALSE TRUE AT4G32030.1|AT4G32030.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80610.1); similar to Os02g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046100.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80610.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15800.1); contains domain Multiheme cytochromes (SSF48695) 0.143111294517736 0.975252234797588 0.356683591553288 1 1.24266631834208 11.917142657279 0.143111294517736 0.188686871139023
AT3G10920_at 10.4600352146621 10.4063169156059 10.3074869110965 10.4012901962534 10.2689238438573 10.340498654121 10.4928680638598 10.6482807141582 10.3377379761562 10.3882233322563 10.6324610037176 10.6004052445965 10.3787558798357 10.5658766654283 10.9087139032562 10.5374947347933 10.5056606570547 10.6567154451923 10.1314412460341 0.0807033529313803 0.0807033529313803 0.0831376183018968 0.0822333871125026 0.0841505814832164 0.083438891098483 0.0843407138983701 0.0807033529313803 0.0884065783938675 0.0857348878517182 0.0807033529313803 0.0809129528034825 0.0854231858270935 0.0861625761617904 0.082818549772047 0.0807033529313803 0.0845412868817501 0.0807368693271964 0.0820513074392813 3 3|0 +|/ 3418116 3419379 3418773 3417959 3419858 + gene protein_coding_gene FALSE TRUE AT3G10920.1|AT3G10920.2 MSD1 (MANGANESE SUPEROXIDE DISMUTASE 1); manganese superoxide dismutase manganese superoxide dismutase (MSD1) Identical to Superoxide dismutase [Mn], mitochondrial precursor (EC 1.15.1.1) (SODA) [Arabidopsis Thaliana] (GB:O81235;GB:Q9SRK3); similar to superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative [Arabidopsis thaliana] (TAIR:AT3G56350.1); similar to superoxide dismutase [Raphanus sativus] (GB:AAL07333.1); contains InterPro domain Manganese and iron superoxide dismutase; (InterPro:IPR001189) 0.0700671322563273 0.975182493056479 0.356716220596766 1 1.24260263859862 20.8577432108100 0.0700671322563273 0.0350241252014606
AT1G15660_at 5.31360540936933 5.84223134448229 5.03496347905928 4.6316297199549 5.29431521409429 5.45876467560844 5.71983417631118 5.31216425372252 4.57370150869266 5.35641111357654 5.24069602353327 5.69054600628028 5.31981842070292 5.51304483969669 5.54968682799139 5.52944912883489 4.89551705310473 4.80379363088176 5.38040750402589 0.247047725683713 0.245895208456927 0.244069167649282 0.249252668002807 0.247737435690478 0.256265506037503 0.244069167649282 0.249603280492015 0.254689770143535 0.244069167649282 0.245894210630205 0.246269534510428 0.247635246319057 0.250897227379822 0.258622702224906 0.249455749557627 0.255252101085234 0.244631689473396 0.244499931015023 1 1|0 +|/ 5384031 5384990 5384756.125 5381165 5385249 + gene protein_coding_gene FALSE TRUE AT1G15660.1 similar to CENP-C [Medicago truncatula] (GB:AAU04617.1); contains domain CENTROMERE PROTEIN C (PTHR16684); contains domain YrdC/RibB (SSF55821); contains domain gb def: CENP-C (Fragment) (PTHR16684:SF3) -0.113864120589445 -0.974946974766783 0.356826425565135 1 1.24238761805454 10.5366013841469 -0.113864120589445 0.137941164941073
AT4G39730_at 10.9473092842672 11.0699870853720 11.1435773261474 11.2936591348053 10.5751860427815 10.622053537966 11.8819061685215 12.2077217016777 10.7815893955611 11.3601341193158 11.3829867731090 11.4993810606829 11.5333471012867 11.5493776277777 11.4805051227590 11.3866599333669 11.3638404786289 11.5201699740296 10.8748993211344 0.0590718349441692 0.0555073157142313 0.055172925847604 0.055172925847604 0.0570135338472897 0.0583857276813012 0.0623962100910646 0.0564874569589012 0.0620270256536714 0.0571901222673105 0.0551894620920647 0.0556747261518299 0.0554919758748828 0.0591192012899775 0.0576073868551666 0.055172925847604 0.0599071019087737 0.0571442572923235 0.0609621011591145 4 0|4 /|+ 18433126 18433519 18433329 18432893 18433689 + gene protein_coding_gene FALSE TRUE AT4G39730.1 lipid-associated family protein similar to lipid-associated family protein [Arabidopsis thaliana] (TAIR:AT2G22170.1); similar to dehydration stress-induced protein [Brassica napus] (GB:AAK01359.1); contains InterPro domain Lipoxygenase, LH2; (InterPro:IPR001024); contains InterPro domain Lipase/lipooxygenase, PLAT/LH2; (InterPro:IPR008976) -0.0795597429582802 -0.97492760584705 0.356835489905064 1 1.24236993666935 22.4527122623384 -0.0795597429582802 0.0661074967605995
AT1G15260_at 9.16368040399689 9.53645269417036 8.86830548139211 9.06291023134356 9.84513870097815 9.66184279783375 10.4360163083877 10.5554019615906 9.48739491728647 9.98329464351858 10.1589383936313 10.4205769172969 10.5154735706662 10.1691311477556 9.95498459419814 10.2952294851660 9.8977314340563 10.0918032465748 9.9192219352403 0.113901844839697 0.108294768778286 0.117190082139032 0.110013801963454 0.110247028463783 0.122148682995272 0.110034034248964 0.112310252582660 0.122660837943061 0.105324004489859 0.105569397748236 0.105324004489859 0.108924727573653 0.111548493932415 0.111727543466964 0.107104428730818 0.119580347939103 0.108191863885337 0.109584804231494 1 1 + 5249888 5250305 5250130.273 5249755 5250568 + gene protein_coding_gene FALSE TRUE AT1G15260.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16070.1) -0.085996052914896 -0.974794753210361 0.356897667419705 1 1.24224866634907 19.6335289544699 -0.085996052914896 0.0820287341715505
AT1G21080_at 8.4100136505478 8.55325874070893 8.63645509072304 8.58810378361985 8.5781764215509 8.68398737783327 8.98623060407338 9.2552642334407 8.83142895589418 8.5588985788237 8.67167677445911 8.41698078098308 8.72544365037333 8.7569570030382 8.30418014620153 8.75306873019493 8.63721719263015 8.84308316227118 8.44346623452783 0.131327690912635 0.132559073863048 0.133746979733227 0.126977520144679 0.127142144098522 0.127501839059056 0.129795735067236 0.124750770594427 0.123191095300764 0.125899109413995 0.124129587716309 0.125503594084945 0.136369806134633 0.127440815524115 0.127996194644316 0.11997358546877 0.137449325474676 0.124016408086952 0.133565047835474 1 1|0 -|/ 7378817 7380177 7379550.222 7378578 7382451 - gene protein_coding_gene FALSE TRUE AT1G21080.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76700.1); similar to DnaJ-like protein [Brassica juncea] (GB:AAW50121.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.07609989924528 -0.974660928425097 0.356960308102745 1 1.24212652171313 17.336356497696 -0.07609989924528 0.0564572260416187
AT2G33630_at 8.14446357398497 8.327859115607 8.31043025388479 8.27363429779 8.50210922753066 7.93533618206999 7.74882923054368 7.4253067455196 7.23458926949539 7.50519828248276 7.39806638471386 7.60908097771341 6.91105420019365 7.20977653753247 7.37372190570052 7.06561719108208 7.51830265059172 7.46444468897281 7.63043865978488 0.209831871324914 0.211405154217807 0.202905555282069 0.207872872247628 0.206896192600392 0.214753550292839 0.205055300357778 0.201744952827932 0.229828986704216 0.203796017188625 0.206274574690227 0.210397558158368 0.202022287027682 0.206262802123765 0.207904192728952 0.201887659357105 0.227256122079236 0.218219283061075 0.20898807073296 2 2 - 14244063 14244665 14244375.2 14243909 14245868 - gene protein_coding_gene FALSE TRUE AT2G33630.1 3-beta hydroxysteroid dehydrogenase/isomerase family protein similar to AT3BETAHSD/D1 (3BETA-HYDROXYSTEROID-DEHYDROGENASE/DECARBOXYLASE ISOFORM 1), 3-beta-hydroxy-delta5-steroid dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G47290.2); similar to Os02g0715200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047924.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF93262.1); contains InterPro domain 3-beta hydroxysteroid dehydrogenase/isomerase; (InterPro:IPR002225) 0.102889410189965 0.974324658869798 0.357117745354743 1 1.24181965951171 15.4712461471915 0.102889410189965 0.117484407544327
AT3G61570_at 5.24444495574707 4.98711671053709 4.69463790597154 4.79152215011024 5.53537067438189 5.11718076404779 4.89072272825925 4.67917137661219 4.45142533794744 4.48729612858539 4.78189954392281 4.87127208448921 4.64737851203994 5.05544454266859 4.84067485796444 4.41523965042125 4.28055446231718 4.35841094317407 4.73599770067181 0.206305735488111 0.185659417386279 0.194312983909127 0.192815923354089 0.187745660166460 0.199845087393031 0.193601855523728 0.190681998825671 0.203149072715844 0.190527628195694 0.193369123769052 0.185088650016502 0.185088650016502 0.185088650016502 0.193829188578991 0.191293207334668 0.198031303084163 0.192533648503725 0.190412826029353 3 3|0 -|/ 22790637 22791502 22790968 22790416 22794809 - gene protein_coding_gene FALSE TRUE AT3G61570.1 intracellular protein transport protein USO1-related similar to intracellular protein transport protein USO1-related [Arabidopsis thaliana] (TAIR:AT2G46180.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56521.1); similar to hypothetical protein DDBDRAFT_0216773 [Dictyostelium discoideum AX4] (GB:XP_646811.1); similar to Os08g0386900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061711.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.0912167665310504 0.97297922572842 0.357748179509553 1 1.24059271654715 9.5998204317215 0.0912167665310504 0.0940311522708084
AT4G19610_at 5.5986982583882 5.9888679819219 5.63993456823001 5.4819886459099 5.83010252191891 5.39150019226425 5.88609839765772 5.23956459212685 4.92118405407613 5.17509727680096 5.19806832322058 5.25406360706221 4.99935182709172 3.94102270420473 5.08145081784462 5.09533841107612 4.80770794595608 5.04174950462092 5.14249268861534 0.206924874525449 0.202364802086415 0.205853027835678 0.202364802086415 0.203665172135241 0.214953745658736 0.208997954957834 0.212048901842194 0.210739989258837 0.202364802086415 0.215208938289037 0.202364802086415 0.213879325700801 0.202364802086415 0.211796418543135 0.207177426425088 0.211384025938160 0.207424824219218 0.206860365436255 4 4|0 +|/ 10680770 10681535 10681100 10677675 10681633 + gene protein_coding_gene FALSE TRUE AT4G19610.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G05720.1); similar to Os04g0611500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053839.1); similar to OSJNBa0085I10.19 [Oryza sativa (japonica cultivar-group)] (GB:CAE03574.2); similar to RNA-binding protein (RRM superfamily) (ISS) [Ostreococcus tauri] (GB:CAL51584.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.122336511319544 -0.972932018643211 0.357770314573807 1 1.24054969103416 10.6355621360349 -0.122336511319544 0.153576365940135
AT1G59820_at 6.11887595985202 6.23123195605908 6.25377719880304 6.17420861328147 6.35546220368371 6.43185651572057 6.09608270196752 5.77432414225539 5.86314781204551 5.79268818255869 5.17873385061547 5.68517916883075 5.56899220336644 5.78814378465248 5.45635805652706 5.88077389419672 5.50872219577221 5.98273789965524 5.51669517203999 0.224860942001149 0.229728254672833 0.238312685541001 0.225687771810449 0.223939845704571 0.234452871241873 0.229324957023519 0.226380971606236 0.231037585046344 0.227960733897802 0.222425220852037 0.223744657461245 0.223532145660802 0.230739735110983 0.224249876260092 0.223176246508373 0.237899753834362 0.219296738392538 0.229720600639403 1 1 + 22022887 22023582 22023229.182 22014993 22023959 + gene protein_coding_gene FALSE TRUE AT1G59820.1 haloacid dehalogenase-like hydrolase family protein Identical to Putative phospholipid-transporting ATPase 3 (EC 3.6.3.1) (Aminophospholipid flippase 3) (ALA3) [Arabidopsis Thaliana] (GB:Q9XIE6;GB:Q8RWQ3); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G68710.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G25610.1); similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G13210.1); similar to putative Potential phospholipid-transporting ATPase 8 [Oryza sativa (japonica cultivar-group)] (GB:BAD37698.1); similar to Putative phospholipid-transporting ATPase 4 (Aminophospholipid flippase 4) (GB:Q9LNQ4); similar to putative ATPase, aminophospholipid transporter (APLT), class I, type 8A, member 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD54494.1); contains InterPro domain Phospholipid-translocating P-type ATPase, flippase; (InterPro:IPR006539); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757) 0.077862759496336 0.972647064280159 0.357903949348422 1 1.24029001247752 11.8571685050779 0.077862759496336 0.0619911882697707
AT1G42470_at 7.67606653832979 7.74589625314006 7.7500114404436 7.66226170190099 8.19837303869781 7.84861742422751 8.09149742902158 7.90302289473358 8.05226278978314 8.08803017126867 8.3665816869986 8.53226362624671 8.12766760414403 8.67850572722046 8.26957399087825 8.40832563992963 8.04667765302904 7.88685987223858 8.27219026793518 0.166641977549317 0.148867877295371 0.148697187827472 0.155197638219161 0.149442377820920 0.151470765572364 0.144939589093970 0.146511450858603 0.159473102608659 0.150826513063319 0.150646487370387 0.149771749017272 0.150687898296128 0.150848509689873 0.154880883913511 0.148096164121018 0.15156859315391 0.148654320416115 0.146673156270306 1 1|0 +|/ 15936242 15937499 15936908.111 15929427 15937648 + gene protein_coding_gene FALSE TRUE AT1G42470.1 patched family protein similar to patched family protein [Arabidopsis thaliana] (TAIR:AT4G38350.1); similar to hypothetical protein SNOG_13186 [Phaeosphaeria nodorum SN15] (GB:EAT79513.1); similar to hypothetical protein MG00819.4 [Magnaporthe grisea 70-15] (GB:XP_368425.1); similar to H0409D10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66746.1); contains InterPro domain Niemann-Pick C type protein; (InterPro:IPR004765); contains InterPro domain Patched; (InterPro:IPR003392); contains InterPro domain Sterol-sensing 5TM box; (InterPro:IPR000731) 0.0813788439672802 0.9720423268803 0.358187675904032 1 1.23973911354814 16.0729940324359 0.0813788439672802 0.0714419968793452
AT2G22970_at 5.99059798986625 6.66245191318447 6.06475640243852 6.20166156761763 6.60081836570562 6.16460001655278 6.96705876123433 7.37532860921201 5.21544153511644 5.8579521364332 5.94719520853714 6.44718411900581 6.69165414862479 6.63764926429467 5.79738441379766 7.15171178257937 6.4287665937905 6.37401334676877 6.01093823752203 0.237647279435216 0.231400055040489 0.235750565419967 0.231515609464767 0.235907867035776 0.235519405135913 0.228585772277955 0.249696240651929 0.239241779808922 0.232035552405667 0.227944014697007 0.230664126855198 0.233693213443563 0.241840706738818 0.232672304278259 0.226556723601997 0.235264439256566 0.227573221938876 0.233559372679679 2 0|2 /|+ 9783895 9785279 9784526 9781933 9785608 + gene protein_coding_gene FALSE TRUE AT2G22970.1|AT2G22970.2|AT2G22970.3 SCPL11; serine carboxypeptidase|SCPL11 similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.1); similar to SCPL13, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22980.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to SCPL13 [Arabidopsis thaliana] (TAIR:AT2G22980.4); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to 1-O-sinapoylglucose:choline sinapoyltransferase [Brassica napus] (GB:AAQ91191.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.124383663177660 0.972027925963178 0.358194434473468 1 1.23972599798756 12.5680202845758 0.124383663177660 0.157384766935439
AT3G28670_at 4.63587218570374 5.11542962310033 4.84542516732046 4.92582047514477 5.33753528156607 4.84691109475969 5.24562115323701 4.90967865840678 4.78141648170427 4.43013563253719 4.89316804398577 4.77526834555201 4.65795049498874 4.55495395214148 4.64070597157616 5.14610967977449 4.23496721905936 4.8269121864586 4.30955790925457 0.201517827343129 0.194848261953781 0.197907383411473 0.202727906131147 0.207190622186572 0.192407374980560 0.205081549129567 0.194576980850368 0.205006272979736 0.198246143078617 0.192407374980560 0.196638974197063 0.199095930750821 0.196176507310942 0.197974635791783 0.195383297112537 0.200888555915434 0.197152129588728 0.209084147138647 3 3|0 +|/ 10747530 10748162 10747879.2 10745060 10748400 + gene protein_coding_gene FALSE TRUE AT3G28670.1 oxidoreductase/ zinc ion binding similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAX95579.1); similar to expressed protein, partial [Oryza sativa (japonica cultivar-group)] (GB:AAX95550.1); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085) 0.110745205889592 0.97155845437679 0.358414816751639 1 1.23929851260796 9.59443228550023 0.110745205889592 0.132926732527416
AT2G26280_at 7.44042950213083 7.69015023467577 7.57721246392357 7.81646022308209 7.63953775991829 7.53595429330818 7.92590353542135 7.91949844525094 7.88462496191958 8.26532756877949 7.96148759685175 8.28548640381505 8.33983711478791 7.98580812416901 7.48569755548755 8.22790283664177 8.22775993148928 7.62655529619172 8.06445842186172 0.132676827336078 0.134018590775382 0.135031714968653 0.138041703430557 0.135766816947322 0.137815892134893 0.134611366587325 0.136010287068027 0.141151750999338 0.132532686588626 0.139676136286198 0.133126990339898 0.130271050547872 0.130271050547872 0.136557753537586 0.130271050547872 0.132648228276291 0.148808182479196 0.130271050547872 2 2|0 -|/ 11195226 11196395 11195614.25 11194811 11198415 - gene protein_coding_gene FALSE TRUE AT2G26280.1 CID7; ATP binding / damaged DNA binding smr (Small MutS Related) domain-containing protein mRNA, complete cds similar to PRLI-interacting factor, putative [Arabidopsis thaliana] (TAIR:AT5G58720.1); similar to Os06g0199200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057066.1); similar to smr (Small MutS Related) domain-containing protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD19433.1); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625) -0.0778038522013504 -0.969700789819465 0.359287845256609 1 1.23760857306068 15.7376618946886 -0.0778038522013504 0.0624845956848324
ATCG00780_at 8.74203733567258 8.86779281563185 8.63452008702171 8.82098776634484 9.73567050038945 8.42108790473678 10.2877507622136 8.83502969157508 9.71565075872854 9.73219234848537 10.594193429986 11.1526225404530 10.2311574509060 10.5822668347722 10.6808319723092 10.530059122803 9.96999170115623 10.0721353210310 9.71631045496673 0.110972303717459 0.117471931825781 0.112791156593143 0.110420862124231 0.108155205580263 0.112088358239700 0.111557249878927 0.112676359972247 0.113294332144347 0.112494356889973 0.111120910673203 0.108155205580263 0.108155205580263 0.111729947192791 0.112497479170987 0.108155205580263 0.114641025063532 0.112239810604110 0.111477113843726 C C - 80743 81035 80919 80696 81064 - gene protein_coding_gene FALSE TRUE ATCG00780.1 encodes a chloroplast ribosomal protein L14, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L14 (rpl14) [Arabidopsis Thaliana] (GB:P56792); similar to ribosomal protein L14 family protein / huellenlos paralog (HLP) [Arabidopsis thaliana] (TAIR:AT5G46160.2); similar to ribosomal protein L14 [Eucalyptus globulus subsp. globulus] (GB:YP_636335.1); contains InterPro domain Ribosomal protein L14, bacterial and organelle form; (InterPro:IPR005745); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) 0.237593344650064 0.96960340755992 0.359333654742443 1 1.23752005326762 19.1421305166502 0.237593344650064 0.341278124907409
AT3G11280_at 10.0806632312132 10.4899919309940 10.4891493556859 10.5921823052076 10.5853897926305 10.2885919768026 10.7030273784758 10.8348954839315 10.5457874897025 10.6551602308949 10.4248490330145 10.1163155294033 10.2842586823163 10.3246060749147 10.0783178014336 10.5217068470096 10.4736440278279 10.5807873716318 10.2757220135538 0.113267946297039 0.104352805755184 0.110068296921864 0.105337318967123 0.109287129344626 0.112331607304246 0.109748147767036 0.103796516033834 0.111108377817061 0.102686552428817 0.107433009462250 0.103046775397797 0.108667521680103 0.114534513892533 0.104232000053721 0.101707196122905 0.118154426925661 0.109589006201524 0.111859263019247 3 3 - 3533485 3534082 3533710.909 3533261 3534853 - gene protein_coding_gene FALSE TRUE AT3G11280.1|AT3G11280.2 myb family transcription factor Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G05790.1); similar to MYB transcription factor MYB75 [Glycine max] (GB:ABH02835.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0899893611725113 -0.969048508973645 0.359594767079676 1 1.23701578750623 20.9293783896981 -0.0899893611725113 0.0921658521119785
AT3G56850_at 5.27490747687471 5.03669337795343 4.92295740202709 5.00031412706301 4.83360227630013 5.34656158469901 4.63836386764548 4.98495079450336 4.52024284704799 4.92126268571673 4.78513329800769 4.92557168141341 4.84555461435762 4.82396382721106 4.89955635244886 4.68046171324321 4.63893270867906 4.56645821992489 4.3897939633845 0.207453270859380 0.212037900270616 0.208310808574544 0.210985830602675 0.208076504295399 0.230384450614338 0.204832337860079 0.201758992795018 0.212850399705608 0.216320727081037 0.207602000076997 0.207753808414564 0.203866416161063 0.207933026500575 0.203719839146669 0.211152900799246 0.222649197323868 0.219074628733459 0.203576078041745 3 3|0 -|/ 21058135 21058485 21058350.1 21057320 21059495 - gene protein_coding_gene FALSE TRUE AT3G56850.1 AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3); DNA binding / transcription factor/ transcriptional activator Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation. similar to EEL (ENHANCED EM LEVEL), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G41070.2); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE83729.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain cAMP response element binding (CREB) protein; (InterPro:IPR001630); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.101200427402860 0.967598490141069 0.360277753365966 1 1.23569914872316 9.69536247203017 0.101200427402860 0.115568875482291
AT2G22090_at 5.70282840216469 6.34908004725477 5.69703141830272 5.89415795397547 6.7111821254554 6.31834314974627 5.44072874062685 6.34531706208179 5.71549695916488 5.75934526612825 5.65137559178914 5.51049895724678 5.84747540351927 5.85674528041462 5.86334616992797 5.98147555775356 5.81657254231745 5.3995574752503 5.41876243451126 0.247733816355546 0.245855029293969 0.255080441487788 0.246054362908101 0.246499880078354 0.252861945620593 0.246704828243882 0.248298439512843 0.249222607316423 0.245361307232832 0.241996633166969 0.241996633166969 0.261369458976781 0.254616192257768 0.252097912301577 0.241996633166969 0.250121674117598 0.244150210346530 0.242809963075075 2 2 - 9396505 9396997 9396749.182 9395340 9397587 - gene protein_coding_gene FALSE TRUE AT2G22090.1|AT2G22090.2 UBA1A; AU-specific RNA binding / RNA binding|UBA1A; RNA binding encodes a nuclear protein that binds to RNA with a specificity for oligouridylates in vitro. As with UBP1, transient overexpression of UBA1a in protoplasts increases the steady-state levels of reporter mRNAs in a promoter-dependent manner. Along with UBP1 and UBA2a, it may act as a component of a complex recognizing U-rich sequences in plant 3'-UTRs and contributing to the stabilization of mRNAs in the nucleus. similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G19380.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71267.1); similar to RNA-binding protein AKIP1 [Vicia faba] (GB:AAM73765.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.152684708923599 0.966428742018787 0.360829430430966 1 1.23463812891456 11.7433748252238 0.152684708923599 0.206878331720173
AT4G38800_at 10.4440197054538 10.4900615668779 10.7487939478559 10.6567843170017 10.8491693370272 10.6931683087083 10.4369699955548 10.3864604206837 10.6110134178227 10.3643013790220 10.4088905435065 10.2619577931401 10.2554811360172 10.2734599895480 10.1212665620961 10.390908902288 10.3948218930682 10.4262474328347 10.4536729497656 0.0915008652515614 0.0856910252914469 0.089306397951948 0.0909511505707996 0.0899328926703497 0.0913633085254009 0.0888698827299375 0.0888993475526772 0.0962338416234427 0.0855498817047314 0.0902510623644699 0.0855114426879633 0.087242521909872 0.091610257977784 0.0899204978788 0.0884159987265727 0.09480309005334 0.0900925140724365 0.0865741910230566 4 4 - 18113410 18114578 18113862.545 18113155 18115127 - gene protein_coding_gene FALSE TRUE AT4G38800.1 ATMTN1; catalytic/ methylthioadenosine nucleosidase similar to ATMTN2, methylthioadenosine nucleosidase [Arabidopsis thaliana] (TAIR:AT4G34840.1); similar to putative ripening-related protein [Vitis vinifera] (GB:CAB85633.1); contains InterPro domain Purine and other phosphorylases, family 1; (InterPro:IPR000845) 0.0689505440989986 0.9642987969165 0.361835569966455 1 1.23270875486315 20.9846577151116 0.0689505440989986 0.0334998980245967
AT1G47128_at 12.1462644258260 12.3103511111096 12.7018400509920 12.8289430215429 12.7710183173118 12.5310057476311 12.6808765575917 12.6995623678404 12.6827521610897 12.8121469506270 12.6368765387870 12.2756274115583 12.7255503363838 12.7962827635145 12.1404413185564 12.8619292098927 12.7258779016493 12.6837555041897 12.6206078308061 0.0568720062627792 0.0568244053559242 0.0572417285732391 0.0582410007996358 0.0571165992113319 0.0624319569795973 0.0570903770735405 0.0574029502933691 0.0587661736430985 0.0553875435180213 0.0557883101131479 0.0559043979205865 0.0553875435180213 0.0574930972008731 0.0564540050750394 0.0553875435180213 0.0639597669912733 0.0573437554876587 0.0565161425049509 1 1|0 -|/ 17285597 17286597 17285933.4 17285265 17288110 - gene protein_coding_gene FALSE TRUE AT1G47128.1 cysteine proteinase (RD21A) / thiol protease Identical to Cysteine proteinase RD21a precursor (EC 3.4.22.-) (RD21) (RD21A) [Arabidopsis Thaliana] (GB:P43297); similar to cysteine proteinase, putative / thiol protease, putative [Arabidopsis thaliana] (TAIR:AT5G43060.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60579.1); similar to Granulin; Peptidase C1A, papain; Phospholipase A2 [Medicago truncatula] (GB:ABD32628.1); similar to senescence-associated cysteine protease [Brassica oleracea] (GB:AAL60580.1); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Peptidase C1A, papain; (InterPro:IPR013128); contains InterPro domain Proteinase inhibitor I29, cathepsin propeptide; (InterPro:IPR013201); contains InterPro domain Peptidase C1A, papain C-terminal; (InterPro:IPR000668); contains InterPro domain Granulin; (InterPro:IPR000118) 0.074780905501516 0.963872429282038 0.362037227066135 1 1.23232293946221 25.2392135019344 0.074780905501516 0.0550071061454741
AT4G34500_at 5.91353872543952 5.99238986365546 5.605312444761 5.46688397457609 5.46168523338764 6.20552337121867 4.87716714833343 5.82723723202151 4.78845993216396 5.29933618731145 5.75718426985342 5.36298393919077 5.20264866405431 5.60894500824188 5.17241426486854 5.31137795410196 5.03388708181213 5.0212521685512 5.0087451028773 0.246979266279086 0.234042168272639 0.237367790297205 0.242150856949457 0.240143342873902 0.247726411266407 0.239184363376014 0.234042168272639 0.248779111708018 0.244576601119173 0.240838858538684 0.236583517567712 0.243043827805574 0.241780712393161 0.234804786839363 0.234042168272639 0.239904105265124 0.24574436591516 0.243643468065180 4 4|0 -|/ 16487956 16488645 16488275.333 16487759 16490959 - gene protein_coding_gene FALSE TRUE AT4G34500.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01540.2); similar to Protein tyrosine kinase, putative [Medicago truncatula] (GB:ABE87947.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.154462137503372 0.96341537001015 0.362253493001832 1 1.23190950070747 10.8392257873168 0.154462137503372 0.210623116024690
AT2G38440_at 8.77371972429578 8.77126803556537 8.23742900231835 8.2181038552992 8.8914121826059 8.5392744548661 8.11500240509023 8.33692701940818 8.69277509160828 8.36076671372507 8.65731592415228 8.50610855364006 8.2773956571056 8.39990890301627 8.45607115022645 8.30147165412276 8.29779816451348 8.54727705235797 8.64015199876576 0.135827801616985 0.130265427649472 0.134525508706413 0.124764327301031 0.123263153866797 0.130146322454119 0.130588799100889 0.123668496095545 0.134249161174352 0.123783421382472 0.128198209057526 0.123263153866797 0.131786464565563 0.127985945761289 0.125737517548358 0.123263153866797 0.133774023287020 0.131678917627696 0.131521217454506 2 2 + 16107006 16107524 16107192.111 16102407 16108299 + gene protein_coding_gene FALSE TRUE AT2G38440.1 ITB1 (IRREGULAR TRICHOME BRANCH1) Encodes a subunit of the WAVE complex. The WAVE complex is required for activation of ARP2/3 complex which functions in actin microfilament nucleation and branching. Mutations cause defects in both the actin and microtubule cytoskeletons that result in aberrant epidermal cell expansion. itb1 mutants showed irregularities in trichome branch positioning and expansion. The SHD domain of this protein binds to BRK1 and overexpression of the SHD domain results in a dominant negative phenotype. Identical to Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein DISTORTED3) (Protein IRREGULAR TRICHOME BRANCH1) (SCAR2) [Arabidopsis Thaliana] (GB:Q5XPJ9;GB:O80907); similar to WAVE3 [Arabidopsis thaliana] (TAIR:AT5G01730.1); similar to SCAR-like protein 1 (GB:Q84TX2); similar to Os03g0298700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049845.1); contains InterPro domain Actin-binding WH2; (InterPro:IPR003124) -0.0809103206460053 -0.963311680042714 0.362302569159747 1 1.23181572811981 16.9828835768102 -0.0809103206460053 0.0721102370969207
AT1G76020_at 7.71691583650726 7.72591547673496 7.09508531325652 7.44915368095435 7.88688838905915 7.35952700263412 8.97026778608066 8.99483910315646 7.44189803407616 8.2532238851611 8.78055047388062 8.72177759978759 8.56820784715047 8.6066777009395 8.5527332179765 8.54080916579643 8.52875046507306 8.9162803529851 8.13554460413329 0.1623596086286 0.164647822464391 0.167784329084530 0.162111152186435 0.158164380438032 0.164919802577002 0.160180327950135 0.160025728654456 0.174160904143205 0.158164380438032 0.159766191876086 0.160807396767193 0.158164380438032 0.166186549558391 0.158812920196917 0.158327772105067 0.158164380438032 0.15827171821235 0.158325616326154 1 1 - 28535906 28537075 28536593.545 28535758 28537228 - gene protein_coding_gene FALSE TRUE AT1G76020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G20225.1); similar to unknown [Solanum tuberosum] (GB:ABB55396.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0979515544926621 -0.963161951889106 0.362373443773518 1 1.23168033467118 16.1975885039174 -0.0979515544926621 0.110016933077594
AT3G27100_at 7.35361191088756 7.24757560283669 7.29464142738602 7.12760590750713 7.49891694452884 7.26972634523255 7.2029965022217 6.83810276246795 6.77313334107614 7.04723051092951 7.24622712875824 7.06918768623593 6.90427915808791 7.01864972021474 6.66676816639781 7.26577657880595 7.12209699372822 6.96932181904835 7.17986939187795 0.169810018646169 0.1685998845041 0.168990116098305 0.163524446104359 0.178884847348646 0.171654638836138 0.162492732384801 0.168651895822855 0.168183717314444 0.163010845437312 0.168611916612695 0.169034063785192 0.177401810080990 0.168009286657440 0.172001882018328 0.164812322056298 0.168610650429720 0.165731942834865 0.164770342326556 3 3|0 -|/ 9995982 9997049 9996752.5 9995782 9997259 - gene protein_coding_gene FALSE TRUE AT3G27100.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD88360.1); similar to Os01g0920200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045218.1); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132) 0.0849308100042987 0.962596542043429 0.362641176413261 1 1.23116920562408 14.2455802525690 0.0849308100042987 0.0820542544712007
AT3G17000_at 9.0343425440132 9.23399427038532 9.56194316658986 9.6810946735646 9.72600494116843 9.62555761718257 9.23166950958186 9.16980671988586 9.00235498826592 8.83918444875768 8.47913575296094 8.20283247911459 8.7448892319172 8.68130470774193 7.83585794026376 8.77327358430683 8.83191456228413 8.67948386200314 8.75796755879282 0.112658702001361 0.116832071080396 0.120619882727296 0.114518488340525 0.117598116771686 0.122857191490284 0.114228926565625 0.119308177780579 0.124360664104865 0.114369349730914 0.115936462054443 0.126612211243771 0.119613343290892 0.126136711602711 0.129560973998882 0.116382638040674 0.119110143787794 0.120087627888418 0.112562578172465 3 3 + 5798362 5799389 5798934 5797185 5799689 + gene protein_coding_gene FALSE TRUE AT3G17000.1 UBC32 (ubiquitin-conjugating enzyme 31); ubiquitin-protein ligase similar to UBC34 (ubiquitin-conjugating enzyme 32) [Arabidopsis thaliana] (TAIR:AT1G17280.2); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE83180.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.0716405108975326 0.961835270392063 0.363001885508181 1 1.23048139149346 18.1055961038029 0.0716405108975326 0.0451186940330742
AT3G47730_at 7.4776145525592 7.3517474597136 7.49361005299788 7.526336787595 8.56798500444717 8.17622886921556 7.98859345743289 7.6779838429868 7.78018412064197 8.06208044545283 7.50297618294184 7.24890583948617 7.87656535488975 7.37453630136147 7.00439010995875 7.82137442867114 7.59308656511548 7.18644826604656 7.98941866828738 0.154967645161772 0.149345444927104 0.147363916847406 0.146580498263366 0.150636419311287 0.146466730734144 0.14594145821184 0.153301063157671 0.149353582593263 0.144426805044460 0.144426805044460 0.144426805044460 0.144565623211911 0.154485480604804 0.155625561402511 0.148929772528105 0.154005840517647 0.147949716246778 0.147067091819482 3 3|0 -|/ 17605340 17606003 17605619.5 17605045 17609881 - gene protein_coding_gene FALSE TRUE AT3G47730.1 ATATH1 (ABC2 homolog 1); ATPase, coupled to transmembrane movement of substances member of ATH subfamily Identical to ABC2 homolog 1 (ATH1) [Arabidopsis Thaliana] (GB:Q84K47;GB:Q9STU0); similar to ATATH15 (ABC2 homolog 15), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61690.1); similar to ATATH11 (ABC2 homolog 11), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G61730.1); similar to Os08g0398000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061742.1); similar to PREDICTED: similar to ENSANGP00000009155 [Strongylocentrotus purpuratus] (GB:XP_791165.2); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0879018400055269 -0.959982600001452 0.363880838823919 1 1.22880928339672 15.4799773996283 -0.0879018400055269 0.0893982314272731
AT4G01700_at 8.30131472013425 8.89271729993006 8.00235878185607 8.22591643621765 4.26581012161164 4.03281376565503 2.53340018936798 2.91405640730699 5.13147935747904 3.20830931817395 3.28947116785313 4.1849209145678 3.06826800968237 3.45656010618987 3.80405885374611 4.06644976500623 4.18139337938509 3.73403736733246 3.5842877501422 0.303855213784868 0.289815048868435 0.291622086459395 0.293521552250786 0.281064686834041 0.291271252024073 0.275927849099528 0.280811234531782 0.274962823810773 0.271776727480999 0.293679829045271 0.281929959094347 0.27914159552388 0.284363856035454 0.278818607679258 0.280172221940038 0.290978307402512 0.279930289119423 0.269333719686147 4 4|0 -|/ 732420 733200 732786.4 732313 733510 - gene protein_coding_gene FALSE TRUE AT4G01700.1 chitinase, putative similar to chitinase, putative [Arabidopsis thaliana] (TAIR:AT1G02360.1); similar to chitinase (class II) [Arachis hypogaea] (GB:CAA57773.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 0.109902712844467 0.959484999984126 0.364117181539697 1 1.22836061289536 9.74496700896102 0.109902712844467 0.133927036116286
AT1G54460_at 6.53190658653263 6.242957048122 5.52564662049609 5.52347559561837 6.78593017750944 6.2975611461686 6.35351989289221 5.48175297155754 6.54861998634567 6.37881461509797 6.55198341003978 6.61350319462662 5.78841622516924 6.24101010527606 6.60470899939444 6.34692570565299 5.87168605321827 6.62115816005608 6.51844232621035 0.162617401101346 0.165741339727736 0.166877783703658 0.175734986324189 0.173077804640602 0.164490086128418 0.180540766475150 0.168345942886663 0.174581441967689 0.170870938996249 0.162071611154304 0.164764220280085 0.168244200467413 0.167704178459311 0.167150191650703 0.163211306746112 0.181168062302119 0.169555718553569 0.169803733731044 1 0|1 /|- 20344575 20345783 20344973 20344267 20347197 - gene protein_coding_gene FALSE TRUE AT1G54460.1 similar to WDL1 (WVD2-LIKE 1) [Arabidopsis thaliana] (TAIR:AT3G04630.3); similar to Targeting protein for Xklp2 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99369.1); similar to Os03g0799100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051574.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) -0.135707867016721 -0.959368219887501 0.364172664518668 1 1.22825534249303 12.4987852336440 -0.135707867016721 0.180008332326914
AT2G04550_at 6.24197594770475 6.68121405418087 6.70289322333185 6.49088442693785 6.7966199966396 6.63346113273823 6.89427560894087 6.59611052935254 5.89874020923475 6.14260903527277 6.1092836028091 6.46585369345878 6.04310657410285 6.5245326135336 6.4969779869399 6.35836185348176 6.3589043357186 5.78932342636329 6.35693498589831 0.200965822029704 0.19668731816663 0.199542008510969 0.198914197996014 0.201231459150442 0.201067052476803 0.202525580308497 0.198955716292485 0.195936129037115 0.200041237419100 0.203110011295821 0.199038600709215 0.199650474272641 0.190198117223134 0.195945017289848 0.196601321834993 0.211668157926296 0.197612606391481 0.197849083582496 2 2 + 1589047 1589783 1589546.4 1588357 1590163 + gene protein_coding_gene FALSE TRUE AT2G04550.1|AT2G04550.3 IBR5 (INDOLE-3-BUTYRIC ACID RESPONSE 5); protein tyrosine/serine/threonine phosphatase similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.1); similar to putative dual specificity phosphatase [Oryza sativa (japonica cultivar-group)] (GB:BAD62187.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387)|similar to dual specificity protein phosphatase (DsPTP1) [Arabidopsis thaliana] (TAIR:AT3G23610.1); similar to Os06g0308100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057473.1); similar to putative dual specificity phosphatase [Oryza sativa (japonica cultivar-group)] (GB:BAD62187.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.0940511302664182 0.958979617559422 0.364357337140871 1 1.22790511310258 12.8302065754465 0.0940511302664182 0.102876751011242
AT3G24180_at 8.84841197273783 8.78868019994619 8.86945662597411 8.53500389824155 7.84979188040586 7.94967341797484 8.22007124280075 7.91857772776484 8.24604449972288 7.92413467830047 7.44414677698234 8.2210880665514 7.68471635102915 7.8958003036444 7.61809065401579 7.97757759979529 7.78174082510808 8.14270837801 7.44178206318645 0.171347770804412 0.174831981377649 0.174927571649133 0.169990689472368 0.167811049761201 0.170205619534378 0.166437490276218 0.176206022739634 0.170870012731741 0.172718366860844 0.167630072683108 0.167893172108390 0.166375089789908 0.175905934357055 0.182155702856749 0.170137712613265 0.170026843289584 0.172610527222264 0.170321248622871 3 3 - 8735102 8735674 8735397.091 8734641 8741732 - gene protein_coding_gene FALSE TRUE AT3G24180.1|AT3G24180.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49900.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33700.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10060.1); similar to unknown protein [Oryza sativa] (GB:AAL31035.1); similar to unknown protein [Oryza sativa] (GB:AAG16864.1); similar to At5g49900 [Oryza sativa (japonica cultivar-group)] (GB:AAX95400.1); contains InterPro domain Protein of unknown function DUF608; (InterPro:IPR006775) -0.0839369789205926 -0.958844711426755 0.364421463823127 1 1.22778355459796 16.2306520539617 -0.0839369789205926 0.0804845917032774
AT2G01260_at 6.5973124317198 7.11961552517577 7.04936017495364 7.18835284026608 6.94976511575348 7.03810196774802 7.90861034462806 7.92336846530813 6.73133142571788 7.40172558615757 7.11725349751595 7.53983182047684 7.40832598880676 7.37493197192089 6.87053924141752 7.72303991692372 7.60710431459921 6.82069996309299 7.33877568032416 0.173092748539202 0.168472305543847 0.172361374998507 0.182720569846025 0.176153294656495 0.172127129871527 0.170505348710609 0.176977023657998 0.183636930174729 0.179361524554218 0.174859578787685 0.171887474390669 0.181539037792254 0.172702300386299 0.180600093833276 0.168472305543847 0.168472305543847 0.186467400304401 0.180535738660584 2 2 - 135528 136761 136069.636 135243 137805 - gene protein_coding_gene FALSE TRUE AT2G01260.1|AT2G01260.2|AT2G01260.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15030.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO39871.1); similar to Os01g0513400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043182.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46235.1); contains InterPro domain Protein of unknown function DUF789; (InterPro:IPR008507) -0.0901966958749703 -0.958296511930195 0.364682132687227 1 1.22728973288925 14.4543075598995 -0.0901966958749703 0.0948081652202397
AT2G43400_at 5.20049599213563 5.44095370867909 4.9945623863271 4.8463359820743 6.01022166208064 5.45844932783863 4.97572514241214 5.51093859133269 5.36803391495872 5.14510663013522 5.09621811952113 5.45104236562845 5.40087379276735 5.74322778412239 5.65312383663575 5.7319328872787 4.94118066205234 4.98627364331515 5.06576547965116 0.259581224169812 0.246977535882715 0.256092867659437 0.249936075153417 0.254600182094991 0.273920453430726 0.250778691670322 0.254696272571994 0.262669173470237 0.257192089088089 0.248587090590384 0.250297026514392 0.247108428945686 0.254925734400963 0.251195011942931 0.247272015981756 0.268963277550371 0.2558544331074 0.246977535882715 2 2|0 +|/ 18030923 18031687 18031288.333 18028257 18032369 + gene protein_coding_gene FALSE TRUE AT2G43400.1 ETFQO (ELECTRON-TRANSFER FLAVOPROTEIN:UBIQUINONE OXIDOREDUCTASE); catalytic/ electron acceptor Encodes a unique electron-transfer flavoprotein:ubiquinone oxidoreductase that is localized to the mitochondrion. Mutants are more sensitive to sugar starvation when plants are kept in the dark for long periods. similar to Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47885.1); similar to putative electron transfer oxidoreductase [Oryza sativa] (GB:AAK39567.1); similar to Electron transfer flavoprotein-ubiquinone oxidoreductase,mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47884.1); contains InterPro domain Electron transfer flavoprotein-ubiquinone oxidoreductase; (InterPro:IPR007859); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.113939721220202 0.958056054928451 0.364796513588925 1 1.22707319798109 10.5889367547751 0.113939721220202 0.141725021118950
AT4G32010_at 6.02885216069784 5.86950788321657 5.7183162395054 5.80938076665305 4.85472966422301 5.74942546950297 4.89166601536076 5.41793852339504 5.69054186952901 5.03847998473579 4.87637220434458 4.88038560328482 4.91402265354098 5.05252759097063 5.08818277846348 4.85601036177566 5.37933902830909 5.28467194902391 5.15946404744488 0.215765549932516 0.197160101266454 0.203598890925943 0.198697635110651 0.204799533015406 0.202721527013065 0.193215145843396 0.198344505131411 0.193161895391867 0.193161895391867 0.198819946443153 0.195321710632961 0.207361114528943 0.193161895391867 0.193381362961884 0.201291760573036 0.208005740084099 0.199368287937936 0.196018901558469 4 4 + 15484342 15484822 15484568.909 15479530 15485359 + gene protein_coding_gene FALSE TRUE AT4G32010.1 transcriptional factor B3 family protein similar to HSI2 (High-level expression of Sugar-Inducible gene 2), transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT2G30470.1); similar to Transcriptional factor B3 [Medicago truncatula] (GB:ABE94132.1); similar to Os07g0679700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060642.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, CW-type; (InterPro:IPR011124); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340) -0.136875528359432 -0.957725199585517 0.364953938748284 1 1.22677532822617 10.7112775845447 -0.136875528359432 0.182416910744677
AT2G24420_at 9.92400169827368 10.1381651289435 10.1046081021189 10.1645506114513 10.7515271044121 10.2352410423082 10.8387171491938 10.5251558940190 9.05192745976113 10.0007068560670 9.6900271829059 9.39605780026181 9.82859215940275 9.68228278365774 9.34352249002502 9.34843132646317 9.44883178346875 9.12080204463083 9.85518449055366 0.129255084307861 0.12471428635708 0.127404090231562 0.126836072208796 0.128443654448207 0.132642799279366 0.127358492717274 0.128300981574548 0.158706035009498 0.131174555338652 0.130379959214296 0.12471428635708 0.12471428635708 0.126204887258401 0.138493727242708 0.128417570331699 0.150194385498817 0.136244141448262 0.129073323814547 2 2|0 +|/ 10388638 10389634 10389069.333 10387106 10390485 + gene protein_coding_gene FALSE TRUE AT2G24420.1|AT2G24420.2 DNA repair ATPase-related similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT4G31340.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93369.1); contains InterPro domain Apolipoprotein/apolipophorin; (InterPro:IPR013326); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) -0.0980747041550654 -0.957679633879305 0.364975623431302 1 1.2267343116904 19.8943748655797 -0.0980747041550654 0.111392779848419
AT2G38130_at 8.04959395912251 8.49866766624846 7.6330665964618 8.30447912955959 8.17800675007559 7.68482441867875 6.49826819901177 7.63508607551766 7.35308631741445 7.18848661374296 7.77160205717895 7.57895432468913 7.1312957672884 7.9254998723168 7.11030789355781 7.57147523805339 6.40894100186947 7.17399356537725 7.21347725958986 0.224650161673926 0.22420837060124 0.235359933666044 0.232187609291265 0.227931309669958 0.24656047921761 0.229380451628634 0.224291891870397 0.239145345407284 0.226083700060809 0.223353524503879 0.225953100847227 0.225336273097492 0.232426743771641 0.224653556184215 0.224898331344455 0.248288196415841 0.229943999325187 0.223353524503879 2 2|0 -|/ 15985728 15987136 15986268.9 15985590 15987793 - gene protein_coding_gene FALSE TRUE AT2G38130.1|AT2G38130.2 ATMAK3 (Arabidopsis thaliana MAK3 homologue); N-acetyltransferase Encodes the Arabidopsis homolog of the yeast protein MAK3, a component of the N-terminal acetyltransferase complex C. In mutant plants, synthesis of plastome-encoded photosystem II core proteins D1 and CP47 is affected resulting in fewer thylakoid multiprotein complexes. similar to GCN5-related N-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G13780.1); similar to unknown [Solanum tuberosum] (GB:ABA46754.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) 0.181007783422238 0.956861988353685 0.365364902557468 1 1.22599855990173 15.1030951553131 0.181007783422238 0.255983221518171
AT4G31560_at 6.71845305230664 6.65441105552307 6.45049305083298 6.66547142923947 7.13075916081304 6.99262616447335 7.43604469710806 7.10752464924365 7.15630296594396 6.68711026656143 6.97134021791695 6.96703956031445 6.888253379998 7.10060402490688 7.02612283080802 7.49295077617794 7.00075021895212 6.8948406777543 7.26095487659673 0.144272226900319 0.140104393862242 0.140484269808158 0.145807298735600 0.147709364055212 0.143990562740101 0.143147450181787 0.149587428746174 0.142114750461692 0.147273417463417 0.149552359328259 0.141106696122376 0.158214856329324 0.140573251645784 0.148285320117668 0.143071433641019 0.147025726134036 0.145291776703075 0.141655490780208 4 4 + 15295226 15295995 15295457.182 15295207 15296247 + gene protein_coding_gene FALSE TRUE AT4G31560.1 similar to hypothetical protein MtrDRAFT_AC130653g13v2 [Medicago truncatula] (GB:ABE94458.1) -0.080661285526382 -0.956782367143377 0.365402826456214 1 1.22592693991556 13.9332364477197 -0.080661285526382 0.0728729114766593
AT3G08730_at 8.86804243508103 8.85551830675493 9.40871249633483 9.5556699620614 9.37865558844487 9.11646956572544 10.140681835468 10.2694913149517 9.35267631490283 9.6462312075537 9.48025593150704 9.5222515698353 9.83330238251328 9.68554620423977 8.99718635604209 9.94358131032203 9.6351309534328 9.51269733971792 9.67226202419379 0.110774587164665 0.108843276717537 0.120478201869599 0.110590075507896 0.112716044581569 0.116731469635206 0.107038095198172 0.110354206769679 0.124287532917348 0.106730970411506 0.110351606913722 0.107138066667836 0.106792350347855 0.108433667987295 0.114699062615638 0.107640375081128 0.118319813894348 0.106730970411506 0.108981955935337 3 3|0 -|/ 2651588 2652370 2652016 2651453 2654218 - gene protein_coding_gene FALSE TRUE AT3G08730.1 ATPK1 (P70 RIBOSOMAL S6 KINASE); kinase/ protein binding Encodes a protein-serine kinase that phosphorylates ribosomal protein in vitro. Activation of AtS6k is regulated by 1-naphthylacetic acid and kinetin, at least in part, via a lipid kinase-dependent pathway. Involved in translational up-regulation of ribosomal proteins. Phosphorylated by PDK1. Interacts with RAPTOR1, which in turn interacts with TOR. SPK6 activity is affected by osmotic stress, and plants overexpressing S6k1 are hypersensitive to osmotic stress. The gene is expressed in all tissues examined, with highest expression level detected in metabolically active tissues. Identical to Serine/threonine-protein kinase AtPK1/AtPK6 (EC 2.7.11.1) (ATPK1) [Arabidopsis Thaliana] (GB:P42818); similar to ATPK19/ATPK2 (ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 19, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2), kinase [Arabidopsis thaliana] (TAIR:AT3G08720.2); similar to Os03g0334000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050027.1); similar to ribosomal protein S6 kinase [Zea mays] (GB:AAQ93804.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0746845397605442 -0.955801804215044 0.365870111520494 1 1.22504530097622 19.0158054488535 -0.0746845397605442 0.0566306000020177
AT1G09010_at 8.33280678482578 8.29593369826542 8.34294218315816 8.00938374865924 9.0698983030264 8.23397767567135 8.7496900157016 8.44491450516364 8.62052178359274 8.89686379328304 8.48409361877193 8.61624115186505 8.78897143964277 8.85463580412118 8.10668326840082 8.66102474869785 7.96987730233239 8.79517660059103 8.71871121102702 0.187086463444489 0.174884184153292 0.191663276040303 0.192307828939477 0.186845109939737 0.178084971012299 0.181594344286840 0.188515957872822 0.192514679939644 0.185440160306266 0.180427611324065 0.177007136470265 0.179671474213995 0.197606495813287 0.185154456553444 0.186164422035172 0.204788958255936 0.180893239316889 0.183908127083695 1 1 - 2895301 2895795 2895561.909 2895169 2899387 - gene protein_coding_gene FALSE TRUE AT1G09010.1 glycoside hydrolase family 2 protein Identical to Mannosylglycoprotein endo-beta-mannosidase (EC 3.2.1.152) (Endo-beta- mannosidase) (AtEBM) [Contains: Mannosylglycoprotein endo-beta- mannosidase 31 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 28 kDa subunit; Mannosylglycoprotein endo-beta-mannosidase 42 kDa subunit] (EBM) [Arabidopsis Thaliana] (GB:Q75W54;GB:O04029); similar to endo-beta-mannosidase [Brassica oleracea] (GB:BAE97370.1); similar to endo-beta-mannosidase [Lilium lon (GB:BAD89079.2); similar to glycosyl hydrolase [Gossypium hirsutum] (GB:AAO27794.1); contains InterPro domain Glycoside hydrolase family 2, sugar binding; (InterPro:IPR006104); contains InterPro domain Glycoside hydrolase family 2, immunoglobulin-like beta-sandwich; (InterPro:IPR006102); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.12628168876252 -0.955277839874809 0.36611998683418 1 1.22457448963910 17.0749201581942 -0.12628168876252 0.164563271450201
AT1G53720_at 4.46902290582566 4.49324482401724 4.51090451286693 4.59665593455083 4.36109017111106 4.34472186006376 4.89287732981629 4.43241869757389 4.99032395677051 4.8167231752206 4.99724283711568 4.8777469490474 4.66907465328867 4.87717793993413 4.88607732952889 4.58180273342829 4.65878907880081 4.87032068057528 4.74745245985545 0.175013995660199 0.176022091292245 0.171641605903321 0.176518388486545 0.177543668663224 0.17758187091091 0.184819440996669 0.168483960422497 0.174066324746915 0.174252770073773 0.168349514118485 0.173715755523082 0.176486903133661 0.176322424564536 0.169457237809905 0.173866354144398 0.173288767862653 0.177015756089124 0.173164674391427 1 1 + 20062499 20062949 20062714.455 20060201 20063306 + gene protein_coding_gene FALSE TRUE AT1G53720.1 ATCYP59/CYP59 (CYCLOPHILIN 59); RNA binding / nucleic acid binding / peptidyl-prolyl cis-trans isomerase Encodes a cyclophilin, member of a family modular proteins consisting of a peptidyl-prolyl cis? trans isomerase (PPIase) domain, followed by an RNA recognition motif (RRM), and a C-terminal domain enriched in charged amino acids. Interacts with with SCL33/SR33 and with a majority of Arabidopsis SR proteins and the largest subunit of RNA polymerase II. Localizes to the nucleus, but it does not significantly colocalize with SR proteins in nuclear speckles. similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to Os06g0670500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058329.1); similar to putative multidomain cyclophilin type peptidyl-prolyl cis-trans isomerase [Oryza sativa (japonica cultivar-group)] (GB:BAD45454.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0838843291970448 -0.954758939478876 0.366367571636626 1 1.22410842971012 9.33950647406008 -0.0838843291970448 0.0812122658279607
AT3G12200_at 8.67311143960421 8.61030507309264 8.6048101541091 8.57627755563803 8.7760062419005 8.69762541577617 8.54179829268732 8.8123699708576 7.99419946192866 7.97209363662844 8.09906416737263 8.44667203042702 8.35358284546901 8.20328192251148 7.79585566251786 8.46848922432773 8.04442619360764 8.10579121160516 8.18017107201575 0.134695832312125 0.136083802004284 0.141415741253399 0.139561137125586 0.134695832312125 0.137346839454235 0.138665082152646 0.134695832312125 0.148477448552004 0.142263590113985 0.138408736623698 0.137315099944621 0.143720974861922 0.138951288885046 0.138661736357657 0.137428245422353 0.143339149815659 0.147659683956353 0.143654706956633 3 3 - 3887200 3887696 3887418.455 3886999 3890833 - gene protein_coding_gene FALSE TRUE AT3G12200.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G20860.1); similar to serine/threonine-protein kinase Nek4-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17425.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0725538324171862 0.954500059322896 0.366491138361072 1 1.22387598661552 16.7807714166686 0.0725538324171862 0.0501892346496002
AT1G06530_at 8.62540706032262 8.81337119341766 8.49885779443945 8.70702665991739 8.69532475995135 8.53432214342113 8.53722592800289 8.65999338602145 8.11323021836217 8.29637578159145 7.9975524322803 8.31808006224619 8.11363128001397 7.92451955577273 8.15647059354829 8.29749119332613 8.22739188673367 7.99218277324501 8.2792316338715 0.127250062371216 0.131617133151004 0.125888493314783 0.125582913710202 0.124580434443787 0.12627049615686 0.121187840768357 0.126254642243679 0.128303438515825 0.129324355121453 0.126124023933696 0.125719654375593 0.128167454745592 0.132781310494690 0.123415626028100 0.124974968319769 0.137838598318934 0.125447515779652 0.129368563175350 1 1 + 2002020 2002566 2002382.091 2001593 2002595 + gene protein_coding_gene FALSE TRUE AT1G06530.1 myosin heavy chain-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58840.2); similar to Putative surface protein [Streptococcus pyogenes MGAS10750] (GB:YP_603188.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.0756570624857054 -0.954336529289908 0.366569209171346 1 1.22372918210158 16.8129548740638 -0.0756570624857054 0.0598625281976061
AT4G01150_at 12.9568174374315 12.9263981429067 12.8519201662704 12.6775203441890 12.9357731351366 12.9123385666192 13.2906001792399 13.3832515123238 13.5823341327051 13.5807402712100 14.0739949104336 14.1618177832945 13.9026085548141 14.0201290122273 14.0493102084057 13.9315384302971 13.6303684168179 14.0692996407090 13.4811910226443 0.0766649228444745 0.067891986059106 0.0729573778810757 0.073112981678097 0.067891986059106 0.0727803969843284 0.0683172145898049 0.0720447120649789 0.0787022875225473 0.0707450132724071 0.0719521697983225 0.0679641178270173 0.0696005731529704 0.0726205803879172 0.0732994303769261 0.0692677717391922 0.0746387723375111 0.0705154083112295 0.0710315575866673 4 4|0 +|/ 493697 494479 494134.7 493548 494850 + gene protein_coding_gene FALSE TRUE AT4G01150.1 similar to threonine endopeptidase [Arabidopsis thaliana] (TAIR:AT4G38100.1); similar to unknown (GB:AAB00107.1) 0.0684580645916886 0.953428933582109 0.367002727697071 1 1.22291477514422 26.755813358087 0.0684580645916886 0.0348154329767688
AT3G57890_at 8.28275402222065 7.97483313005028 8.12585760084061 7.92208714953091 8.27237791509377 8.19773472196414 7.8984398021882 8.0025922458656 8.86138885971553 8.82529643557497 8.6187081824182 8.83547063866008 8.73423177877803 8.48190033461885 8.6904907843607 8.4789941246574 8.55114968407886 8.33373067909779 8.82475775418798 0.165470233298802 0.159851431735264 0.160757957271716 0.166742224748456 0.156985582857641 0.163557219138075 0.153747095030573 0.155301499536127 0.167702146996952 0.149648563652923 0.151552019931667 0.153777808846013 0.152741238057596 0.159147757961199 0.155206493297339 0.147983082034169 0.155911147290838 0.160383655251667 0.153565777253496 3 3|0 +|/ 21451484 21452645 21452062.889 21449180 21452998 + gene protein_coding_gene FALSE TRUE AT3G57890.1 tubulin-specific chaperone C-related similar to tubulin-specific chaperone C-related [Arabidopsis thaliana] (TAIR:AT2G42230.2); similar to Os02g0194800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046181.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57668.1); similar to Os06g0614300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058077.1); contains InterPro domain Cyclase-associated protein; (InterPro:IPR006599); contains InterPro domain Tubulin binding cofactor C; (InterPro:IPR012945) -0.078351805274789 -0.953179281082626 0.367122042165332 1 1.22269086361856 16.7984506779659 -0.078351805274789 0.0676369294076873
AT3G55130_at 9.6225385900801 9.99510179713358 8.79399464404222 8.88673242290431 9.76325701553916 9.2010021170132 8.9040092577521 9.09240523061367 8.70187236947558 8.78265271532849 8.80498459041511 9.21410164554572 9.01943904583365 9.2754780571265 8.38082441683474 8.61044175510344 8.5048480049702 9.0299689164568 8.97193679228099 0.157742966379846 0.156605510436604 0.158940563301718 0.152236659180201 0.162758501799102 0.160782681085587 0.166982923216959 0.152830031461749 0.166603426544715 0.15575326000258 0.152560749297968 0.146701167388434 0.155751376412371 0.152341506420895 0.154685899014505 0.154349485562146 0.166166315904346 0.152940534363155 0.151474875768256 3 3 - 20445106 20445651 20445403.182 20444855 20447367 - gene protein_coding_gene FALSE TRUE AT3G55130.1 ATWBC19 (WHITE-BROWN COMPLEX HOMOLOG 19); ATPase, coupled to transmembrane movement of substances Encodes a vacuole localized protein of the ABC transporter White-Brown Complex (WBC) family. When overexpressed in planta, confers resistance to kanamycin. Identical to White-brown complex homolog protein 19 (WBC19) [Arabidopsis Thaliana] (GB:Q9M3D6); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55110.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55100.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G55090.1); similar to unnamed protein product [Oryza sativa] (GB:BAA90508.1); similar to stigma/style ABC transporter [Nicotiana tabacum] (GB:AAR06252.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97036.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.103038495339691 -0.95277488158175 0.367315374503859 1 1.22232825910404 18.1192958492502 -0.103038495339691 0.122249035042513
AT2G21230_at 7.632522173346 7.54454197272791 7.72632855458124 7.74135463805515 7.9653735911441 7.69949169688057 7.70253821845553 7.75735877644861 7.34396343354913 7.24303648767359 7.21155205012031 7.47392709506497 7.3086274406101 7.30814871795825 7.31773861524037 7.20688555308710 7.19526902388593 7.35121154362678 7.24152378328848 0.167865966352747 0.176655996277668 0.176099135293748 0.168463365913144 0.168261352354548 0.180425282709534 0.173204020143885 0.178453160904452 0.167007331219529 0.175165315507030 0.177171655628239 0.170315938080097 0.174075271115071 0.172358241646393 0.173600419946320 0.173910653200641 0.178804389006058 0.17681452907553 0.169431685983826 2 2|0 -|/ 9101031 9102148 9101626.667 9100705 9103428 - gene protein_coding_gene FALSE TRUE AT2G21230.1|AT2G21230.2 bZIP family transcription factor similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G38900.3); similar to cAMP response element binding (CREB) protein [Medicago truncatula] (GB:ABE79946.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827)|similar to DNA binding [Arabidopsis thaliana] (TAIR:AT4G38900.3); similar to bZIP transcription factor bZIP28 [Glycine max] (GB:ABI34675.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0721961358497882 0.952675307151181 0.367362989859537 1 1.22223899445215 15.0076109892647 0.0721961358497882 0.0494539164392654
ATCG00120_at 12.7829357355964 13.6752081001680 12.9666314836570 13.4189501784709 12.2894458165338 12.7564604777444 12.7628306722777 13.4743021216249 13.3880587315547 13.5237905307157 14.2783010413859 14.4995530786446 14.0394485884051 13.9858755006136 14.0493540464533 14.1616839916656 13.605919156527 13.6501898346506 13.2654488124254 0.093042465692757 0.0914755798330378 0.0967743886809316 0.0905027760150646 0.092747795611554 0.0989300291403763 0.0927780347285044 0.0905027760150646 0.106611090697477 0.0905027760150646 0.0933949623392767 0.0905027760150646 0.0910907595481382 0.0979739078285788 0.0931527221272214 0.0909219943196392 0.100505890533481 0.09632639701544 0.0905027760150646 C C - 9950 10502 10282.636 9938 11461 - gene protein_coding_gene FALSE TRUE ATCG00120.1 Encodes the ATPase alpha subunit, which is a subunit of ATP synthase and part of the CF1 portion which catalyzes the conversion of ADP to ATP using the proton motive force. This complex is located in the thylakoid membrane of the chloroplast. Identical to ATP synthase subunit alpha (EC 3.6.3.14) (ATPase subunit alpha) (ATP synthase F1 sector subunit alpha) (atpA) [Arabidopsis Thaliana] (GB:P56757); similar to ATP synthase alpha chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT2G07698.1); similar to ATP synthase CF1 alpha subunit [Eucalyptus globulus subsp. globulus] (GB:YP_636284.1); similar to ATP synthase CF1 alpha chain [Populus alba] (GB:YP_665543.1); similar to ATP synthase CF1 alpha subunit [Morus indica] (GB:YP_762246.1); contains InterPro domain ATPase, F1 complex, alpha subunit; (InterPro:IPR005294); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; (InterPro:IPR004100); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding; (InterPro:IPR000194); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793) 0.162705397456362 0.95247032746415 0.367461023166859 1 1.22205526128861 26.7289572464384 0.162705397456362 0.227291110885928
AT1G70820_at 11.2655244438373 11.3218549782395 10.9525604309039 10.9767225688677 11.2862268812297 11.1132491830498 11.2786604718786 11.2271539278932 11.1839251927491 11.6071438802751 11.8253301958192 11.6684289439801 11.6849800648268 11.8198945823485 11.6673607957089 11.7585787663768 11.5547142097714 11.7844189728671 11.3890865842070 0.0703000536526128 0.0681182279240324 0.0702936604821796 0.0704458788327161 0.0686099963868532 0.0722975153773472 0.0730499512721624 0.0720683979969849 0.0703901233688798 0.0681182279240324 0.0688085632331673 0.0688406917710153 0.0699423697190794 0.0699709497391656 0.0702140520543271 0.0681182279240324 0.0703696980946082 0.0681182279240324 0.0706396728359726 1 1|0 +|/ 26710769 26711635 26711280.5 26709180 26711926 + gene protein_coding_gene FALSE TRUE AT1G70820.1 phosphoglucomutase, putative / glucose phosphomutase, putative similar to phosphoglucosamine mutase family protein [Arabidopsis thaliana] (TAIR:AT5G17530.2); similar to Os06g0476200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057639.1); similar to phosphoglucomutase [Spinacia oleracea] (GB:CAA53507.1); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; (InterPro:IPR005845); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; (InterPro:IPR005844); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; (InterPro:IPR005846); contains InterPro domain Phosphoglucomutase/phosphomannomutase; (InterPro:IPR005841) 0.067984703967952 0.952309267491552 0.367538065053939 1 1.22191091744047 22.7346683785072 0.067984703967952 0.0329854837396998
AT2G24200_at 11.6116388556987 11.6636371389883 11.7251721739612 11.7004410959271 11.3329781251355 11.2907338599061 11.4332051266025 11.3622385593537 10.8291569428312 11.3364903007857 11.2023162593099 11.1541525393596 11.1524135024504 11.1981294569072 11.1646969290670 11.1445545224365 11.2499045016694 11.364640867433 11.03735651485 0.0615232658289551 0.0594945526681198 0.060201706186556 0.0604227554853064 0.0597553776863843 0.0608006595733351 0.061263747133116 0.0607040626011201 0.0698200772947187 0.0607130377493892 0.0594945526681198 0.0594945526681198 0.0603320196204464 0.0616067554200965 0.0608753299360241 0.0594945526681198 0.0609560619840872 0.0595524572685978 0.0648619286856251 2 0|2 /|- 10294124 10294941 10294519.444 10293886 10296635 - gene protein_coding_gene FALSE TRUE AT2G24200.1 cytosol aminopeptidase Identical to Leucine aminopeptidase 1 (EC 3.4.11.1) (LAP 1) (Leucyl aminopeptidase 1) (Proline aminopeptidase 1) (EC 3.4.11.5) (Prolyl aminopeptidase 1) (PM25) [Arabidopsis Thaliana] (GB:P30184); similar to cytosol aminopeptidase family protein [Arabidopsis thaliana] (TAIR:AT4G30920.1); similar to cytosol aminopeptidase family protein [Arabidopsis thaliana] (TAIR:AT4G30910.1); similar to neutral leucine aminopeptidase preprotein; preLAP-N; metallo-exopeptidase; leucyl aminopeptidase; LAP [Lycopersicon esculentum] (GB:AAO15916.1); similar to Leucine aminopeptidase 2, chloroplast precursor (LAP 2) (Leucyl aminopeptidase 2) (Proline aminopeptidase 2) (Prolyl aminopeptidase 2) (GB:Q6K669); similar to Cytosol aminopeptidase family, catalytic domain, putative [Medicago truncatula] (GB:ABE88725.1); contains InterPro domain Peptidase M17, leucyl aminopeptidase, N-terminal; (InterPro:IPR008283); contains InterPro domain Peptidase M17, leucyl aminopeptidase, C-terminal; (InterPro:IPR000819); contains InterPro domain Peptidase M17, leucyl aminopeptidase; (InterPro:IPR011356) 0.065417273205945 0.951899092971219 0.367734323010274 1 1.22154340149022 22.6507651128557 0.065417273205945 0.0174229861882469
AT3G07090_at 7.9212020053693 8.34374882152995 8.40040360310777 8.46156433734884 8.46098745095617 8.0979098879096 9.31372020950514 8.86081308839039 8.39467578979782 8.91503832876736 9.06450378967154 8.68869278040273 8.64336483073385 8.61800297596129 8.664349713947 8.8911256962527 8.48795486381636 8.85282777068737 8.76773593172973 0.144282094348552 0.136351976325560 0.141965480422208 0.145194456023569 0.147612470866369 0.149795539115237 0.141841934305598 0.141435008548550 0.148516759458601 0.141233891760849 0.136351976325560 0.136351976325560 0.145145980829378 0.144602054934147 0.151169392303663 0.140184719822439 0.150531343780633 0.152094844682467 0.143207944818836 3 3 - 2243290 2243811 2243542.182 2243004 2244826 - gene protein_coding_gene FALSE TRUE AT3G07090.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25170.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABB47783.1); similar to unknown protein [Oryza sativa] (GB:AAG16855.1); similar to Os02g0814000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048488.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) -0.104142629391147 -0.951333343469283 0.368005146623634 1 1.22103669627868 17.1982117519059 -0.104142629391147 0.124699860296447
AT2G41490_at 8.04608924604008 8.28123988120096 8.42102432979306 7.71444600702103 8.27138539599474 8.0309848259866 7.30044716645352 7.39247173116858 6.67415710865583 6.85108963233482 6.46940952861505 6.33549637746528 6.58044817418295 6.3743790385037 6.27956977904024 6.66532869536537 7.36724172216433 7.1777293056799 6.84550026048982 0.270007298377725 0.265996651424481 0.248592560754837 0.285195194719105 0.26454083966704 0.251513447723275 0.247444029809554 0.246164762474371 0.285994611167430 0.256196196992484 0.272709939475456 0.246164762474371 0.253377854859730 0.256511325697171 0.255519493280825 0.246164762474371 0.267482136414266 0.246164762474371 0.25934950826026 2 2|0 +|/ 17309902 17311078 17310369.6 17308773 17311289 + gene protein_coding_gene FALSE TRUE AT2G41490.1 GPT (UDP-GLCNAC%3ADOLICHOL+PHOSPHATE+GLCNAC-1-P+TRANSFERASE); UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase similar to UDP-GlcNAc:dolichol phosphate N-acetylglucosamine-1-phosphate transferase, putative [Arabidopsis thaliana] (TAIR:AT3G57220.1); similar to Glycosyltransferase (ISS) [Ostreococcus tauri] (GB:CAL56387.1); similar to Os07g0661100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060535.1); contains InterPro domain Glycosyl transferase, family 4; (InterPro:IPR000715) 0.110174730308341 0.95061709376681 0.368348225778853 1 1.22039554011671 14.6554857370176 0.110174730308341 0.136352327524427
AT1G59610_at 8.2138515624922 8.41990488748634 8.23948124511485 8.62125523917585 8.53316739734741 8.33622513908511 8.22406100205171 8.11396305578694 8.38858143969441 8.16920846904543 8.46588996978255 7.96629295171871 8.23488792844315 8.26332458865589 8.23071633734051 8.27595773780434 8.19363438567298 8.2040987154715 8.1897174252762 0.132914252438279 0.130892045036027 0.136907725094433 0.127283205251214 0.135388141935351 0.137925672990589 0.133911025544871 0.131722408089932 0.143061895576013 0.128379957186707 0.132117478210990 0.132406645955368 0.141564026664872 0.137184854568547 0.136464274110591 0.127820836003057 0.148069020336757 0.138796683788525 0.130124979399258 1 1|0 +|/ 21903640 21904413 21904112.7 21896886 21904751 + gene protein_coding_gene FALSE TRUE AT1G59610.1 ADL3 (ARABIDOPSIS DYNAMIN-LIKE 3) A high molecular weight GTPase whose GTP-binding domain shows a low homology to those of other plant dynamin-like proteins.Contains a pleckstrin homologous domain. Identical to Dynamin-2B (EC 3.6.5.5) (Dynamin-related protein 2B) (Dynamin-like protein 3) (DRP2B) [Arabidopsis Thaliana] (GB:Q9LQ55;GB:Q9SLT3;GB:Q9SLT4;GB:Q9SXX3); similar to ADL6 (DYNAMIN-LIKE PROTEIN 6) [Arabidopsis thaliana] (TAIR:AT1G10290.1); similar to putative dynamin homolog [Oryza sativa (japonica cultivar-group)] (GB:BAD16041.1); similar to DRP [Cucumis melo] (GB:AAU04752.1); similar to dynamin homolog [Astragalus sinicus] (GB:AAF19398.1); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Dynamin GTPase effector; (InterPro:IPR003130); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993); contains InterPro domain Dynamin central region; (InterPro:IPR000375); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.0848841718745148 0.949710504707243 0.368782814848878 1 1.21958454909013 16.5769984101675 0.0848841718745148 0.0846230522094193
AT3G45830_at 5.88833710728574 6.34744431262514 6.09785795290877 6.65303588193488 6.40294780075866 6.35011529574089 5.05202392997185 6.02202201379955 5.36977382994154 5.61523476779054 5.27591152580281 4.99326119540327 5.08579852366139 5.24942277483016 4.64312765196346 5.58017923922943 6.1206985568067 5.36621591479460 5.62007879646987 0.197465834594217 0.197576797909284 0.202056666393437 0.199785569673895 0.202778030171239 0.205240913470187 0.213018500434561 0.196889313786287 0.208705585069962 0.196659106232363 0.196659106232363 0.197482947009013 0.200793028081372 0.205147421158069 0.198443019315442 0.196659106232363 0.214614989790552 0.203717270851830 0.198464528665512 3 3 + 16855572 16856077 16855836.455 16852262 16856526 + gene protein_coding_gene FALSE TRUE AT3G45830.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02290.1); similar to unknow protein [Oryza sativa (japonica cultivar-group)] (GB:AAV44209.1); contains domain NFRKB-RELATED (PTHR13052); contains domain NFRKB (PTHR13052:SF3) 0.151415091663031 0.949326476893326 0.368967019249041 1 1.21924120122319 11.5139010639842 0.151415091663031 0.209295254860368
AT3G59870_at 6.81909323024676 6.86525434212983 6.40781522623291 6.2887833833486 7.25889620957401 6.69417969952499 7.57586903842334 7.0023397134603 6.94365390232002 6.8184895686153 6.89787841192871 7.12866700472035 6.80928101287047 7.1055463155831 7.37042946264314 6.85930426363753 6.51567012163027 7.29560725925457 6.69652416312341 0.194935805434637 0.188935206659865 0.180934024519779 0.192673146274393 0.187339724917143 0.187598040149538 0.179059332026186 0.183166486861692 0.200719422143119 0.181510330850630 0.188857507651110 0.179059332026186 0.192104553094881 0.18417416453429 0.189601746937889 0.179059332026186 0.183220771313042 0.191427054924730 0.179668055168890 3 3 - 22127345 22128368 22128022.818 22127138 22129218 - gene protein_coding_gene FALSE TRUE AT3G59870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43945.1); similar to Os01g0338600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042944.1); similar to hypothetical protein Tery_2745 [Trichodesmium erythraeum IMS101] (GB:YP_722402.1) -0.112489173940493 -0.949001770699437 0.369122822152824 1 1.21895097697303 13.7727057851441 -0.112489173940493 0.141030531828717
AT4G28480_at 8.07375456097102 8.47496630366334 8.19919215273087 8.41104791461397 8.40386309111749 8.50258755767947 8.64035440608918 8.59888856536556 8.03511223155743 8.14225049535533 8.43884617562019 8.32907718554333 8.47345076880625 8.31938205364525 8.16756105648902 8.3155572916274 8.07392254817318 8.19237296421232 7.98661338897326 0.141967097307801 0.137277708646937 0.147007976748734 0.156467777810176 0.142558196375908 0.145744165922019 0.137231835746531 0.142433181304162 0.145763175849474 0.143923699377963 0.136180591482864 0.143599936242707 0.144488088318253 0.141836726490697 0.143040784790251 0.137072335458907 0.143355142676032 0.142035990843505 0.145302914807835 4 4 + 14074246 14074979 14074745.909 14073048 14075242 + gene protein_coding_gene FALSE TRUE AT4G28480.1|AT4G28480.2 DNAJ heat shock family protein|heat shock protein binding / unfolded protein binding similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE89016.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623)|similar to DNAJ heat shock family protein [Arabidopsis thaliana] (TAIR:AT2G20560.1); similar to Heat shock protein DnaJ [Medicago truncatula] (GB:ABE89016.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.083147135116228 0.948923084838482 0.369160585083957 1 1.21888065895381 16.5847967994338 0.083147135116228 0.0806738566354627
AT2G01570_at 8.67429656231724 8.94409041990918 8.4328235060774 8.69591610358462 9.0066665378015 8.82941049683755 9.45215108087307 9.36839106007847 8.64648448086211 8.53118407658095 9.07160569303198 9.11387705461067 8.89185250359647 8.70768457431648 8.61423461382873 9.14870639771653 8.92979935753518 8.29546018624608 8.7371749444789 0.144821431761928 0.143296307061285 0.147727593503003 0.153961698268001 0.141548802006637 0.147071692528174 0.143919645146087 0.151817627829160 0.162107795934803 0.146841962313728 0.147512929079530 0.148605671945081 0.150289448033489 0.156172272323482 0.154972552208889 0.143682980294984 0.142122079965607 0.158677251218231 0.160948823944149 2 2 - 255587 256154 255918.818 255248 257549 - gene protein_coding_gene FALSE TRUE AT2G01570.1 RGA1 (REPRESSOR OF GA1-3 1); transcription factor Member of the VHIID/DELLA regulatory family. Contains homopolymeric serine and threonine residues, a putative nuclear localization signal, leucine heptad repeats, and an LXXLL motif. Putative transcriptional regulator repressing the gibberellin response and integration of phytohormone signalling. DELLAs repress cell proliferation and expansion that drives plant growth. Identical to DELLA protein RGA (Repressor on the ga1-3 mutant) (GAI-related sequence) (Restoration of growth on ammonia protein 1) (RGA) [Arabidopsis Thaliana] (GB:Q9SLH3;GB:O23642;GB:O23725;GB:Q941D4); similar to GAI (GA INSENSITIVE), transcription factor [Arabidopsis thaliana] (TAIR:AT1G14920.1); similar to DELLA protein RGA1 (RGA-like protein 1) (BrRGA1) (GB:Q5BN23); similar to DELLA protein GAI [Gossypium barbadense] (GB:ABG26370.1); similar to DELLA protein RGA2 (RGA-like protein 2) (BrRGA2) (GB:Q5BN22); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.0800783697081378 -0.946909620913781 0.37012785658279 1 1.21708289059372 17.6679350783937 -0.0800783697081378 0.073510941723666
AT3G46290_at 6.41367179614615 7.07059440968162 7.02037121330336 6.79125660643495 7.47309485023387 7.11990836512616 8.08201701386423 8.34812880434021 7.7360977439643 6.8786383147687 8.19367488581501 7.38755887822815 8.28884018140121 8.42230934587106 7.25290926324897 7.43605208524716 7.3766324170549 7.95762156064245 6.9426115216986 0.177739613596485 0.180199245730687 0.178068885042252 0.1868964909454 0.177245862127218 0.175861353203908 0.180606841764001 0.181142086681296 0.189215282279250 0.180711541750132 0.179756297156058 0.179035157088808 0.186482904711559 0.186974835423711 0.175948302124084 0.178212055911378 0.192730819578024 0.178151213965009 0.186805898935357 3 3 + 17025888 17026389 17026138.818 17023994 17026772 + gene protein_coding_gene FALSE TRUE AT3G46290.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G54380.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G59700.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G39110.1); similar to Protein kinase [Medicago truncatula] (GB:ABE93789.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT07653.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAN64488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.113111026572307 0.946848848399783 0.370157080818164 1 1.21702867555577 14.7774965593909 0.113111026572307 0.142662238764400
AT3G61670_at 5.969775625208 6.53737655786248 6.32123513607828 6.43918181475341 6.36917103138164 6.75078914607468 5.44808311825476 5.4816065128344 5.84456477098217 5.39110618874949 5.41034056125655 5.94017340886339 4.97817390637772 5.17286596846346 5.47564692505315 5.29055613698005 5.15680336827076 5.3975288954378 6.04701412123689 0.178473360281471 0.181786204545974 0.181522615404018 0.178341792026665 0.186133446320634 0.192744071526693 0.183387157936263 0.185235263541316 0.187910125266581 0.184239096446954 0.186043405972816 0.179677824003841 0.180120733854800 0.190641026084749 0.191358889888020 0.181853301793873 0.182627637808525 0.183488393081674 0.184112607864923 3 3 + 22832032 22832675 22832363.636 22829564 22832995 + gene protein_coding_gene FALSE TRUE AT3G61670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46380.1); similar to unknown [Striga asiatica] (GB:ABE66402.1); similar to Os02g0258300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046475.1); similar to Os06g0524300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057757.1) 0.101374973940218 0.946784767111502 0.37018789801592 1 1.21697151175930 11.7214804544696 0.101374973940218 0.120249762580734
AT1G35420_at 9.76721624871494 9.65655176584001 9.71320351966798 9.42313596120192 9.99773295779469 9.84158760750907 10.0849419573129 10.0034463618889 10.1764646227746 10.3994785747905 10.4720351742892 10.2125712095033 10.1743640615871 10.3402966146775 10.3236646943526 10.2667074146198 10.1664888296835 10.2901768234220 10.3177976367533 0.0964278998390843 0.094168411594664 0.100103057614437 0.101070957262892 0.0982506669186144 0.102304028243291 0.0962195553331937 0.0926225760246974 0.101870142947276 0.0955070862591048 0.0983127955869569 0.0923026749317106 0.0970979082071965 0.0916113427350114 0.093760975978465 0.0919810664018765 0.0981929030724061 0.09817834433007 0.095839801011549 1 1|0 +|/ 13026783 13027358 13027072.7 13026267 13027645 + gene protein_coding_gene FALSE TRUE AT1G35420.1 dienelactone hydrolase family protein similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23600.1); similar to Dienelactone hydrolase [Medicago truncatula] (GB:ABE94325.1); contains InterPro domain Dienelactone hydrolase; (InterPro:IPR002925) -0.0756247902841625 -0.945649868300956 0.370733993072176 1 1.21595963288036 20.1003279045945 -0.0756247902841625 0.061770751098282
AT2G01680_at 7.8689527815323 8.05456034243845 8.08554236237063 8.12291212681967 8.36550815580848 7.85627505721723 8.38246233062837 8.38599575819684 7.12077785215386 7.65044958312809 7.21290775879664 7.29706152268768 7.69629189175511 7.66994293403798 6.44678879847163 7.61229115471046 7.51644407536754 7.37430617992068 7.62410082294906 0.194080618166925 0.204492500727090 0.205542489169001 0.206018991051245 0.197807906742489 0.202748401037777 0.205146959383672 0.199541185164209 0.236594461815078 0.202609772668481 0.201624217545320 0.199269696325397 0.201585088924191 0.217116467794235 0.204319829368270 0.194088450391176 0.207577991623017 0.199358377430076 0.196601452947734 2 2 + 307871 308360 308085.636 306384 308658 + gene protein_coding_gene FALSE TRUE AT2G01680.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G07710.1); similar to Os02g0735700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048047.1); similar to Ankyrin [Medicago truncatula] (GB:ABE93792.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0886442537934311 -0.945587919743018 0.370763818791271 1 1.21590442712398 15.5494579688159 -0.0886442537934311 0.094021014486332
AT2G43130_at 7.58699256450185 7.85730712478568 7.69979280236436 7.9889503973368 8.29595163711046 8.1167522032085 9.16764073824026 9.2183435389776 7.2170380140088 7.16537184171282 7.95823013143234 7.62504817455589 7.94473736543444 7.7105914484098 7.58594368497506 6.99876317583232 7.73186517261039 7.84183132662598 6.85989033270896 0.195551329357101 0.186397814929259 0.19069498711336 0.189828081437875 0.188794356906075 0.190014666065197 0.188511861838346 0.191924740819984 0.202459088964029 0.193376626933888 0.189393132434608 0.189883841095433 0.188163125018947 0.200057675264327 0.192636046427842 0.187996773866876 0.202032906817856 0.192391680923191 0.203684925277111 2 2|0 -|/ 17937145 17937902 17937716 17936731 17938013 - gene protein_coding_gene FALSE TRUE AT2G43130.1 ARA4 (Arabidopsis Rab GTPase homolog A5c); GTP binding encodes a protein belonging to the Rab/Ypt family of small GTPases, which are implicated in intracellular vesicular traffic. Identical to Ras-related protein ARA-4 (ARA-4) [Arabidopsis Thaliana] (GB:P28187); similar to ARA/Ara-1/AtRABA5e/AtRab11D (Arabidopsis Rab GTPase homolog A5e), GTP binding [Arabidopsis thaliana] (TAIR:AT1G05810.1); similar to AtRABA5d (Arabidopsis Rab GTPase homolog A5d), GTP binding [Arabidopsis thaliana] (TAIR:AT2G31680.1); similar to small GTP-binding protein (GB:AAA68983.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.0808251744431725 0.945497716076798 0.370807251359322 1 1.21582404682936 15.6191628955464 0.0808251744431725 0.0757033135226136
AT1G33980_at 7.08169734877365 7.24878687603767 7.0904193281148 6.92319130715854 7.62758656650245 7.32874022444408 7.02499848406466 7.21395416642531 6.59109548956965 6.4105385307134 6.7026762407673 6.67646208066255 6.69414995097669 6.90537189665795 6.47461188532973 6.8488502113835 6.02136414829696 6.21715806684632 6.52196138268962 0.173363416939616 0.173226502139431 0.190047192614848 0.178337616636154 0.187603473105656 0.201531839506538 0.173864029088979 0.182360814156878 0.177975199630382 0.182218785546657 0.171117303586682 0.174829161760981 0.174591365372716 0.178343332119013 0.179953702623171 0.17155186871972 0.201598751778891 0.175577071335935 0.169095815606911 1 1|0 +|/ 12353536 12354489 12353898.25 12351573 12355003 + gene protein_coding_gene FALSE TRUE AT1G33980.1 ATUPF3/UPF3; nucleotide binding Involved in mRNA surveillance, detects exported mRNAs with truncated open reading frames and initiates nonsense-mediated mRNA decay (NMD) similar to H0525C06.10 [Oryza sativa (indica cultivar-group)] (GB:CAH66847.1); contains InterPro domain Nonsense-mediated decay UPF3; (InterPro:IPR005120); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677) 0.0799202817602727 0.944611221172943 0.371234293118847 1 1.21503441731959 13.7301446349098 0.0799202817602727 0.0736036919590591
AT1G70570_at 8.01840030170715 8.13873190181252 8.20549232615712 8.44067974782853 8.18355789917451 8.14626650577735 7.9960519005511 8.29030938817149 7.61642486355878 7.68017025460879 7.47301583879318 7.71135602519116 7.51517624287961 7.69652317416442 7.44671804688454 7.90481780252067 7.78786513111697 7.26964219082489 7.43640891398397 0.176945104048035 0.17527246187692 0.177669857153058 0.181024918931366 0.17527246187692 0.188681932952763 0.18605792276218 0.181694577917739 0.183626891678815 0.186843493017609 0.178030095061350 0.176817586317078 0.183319331520913 0.182178370885931 0.182420545622159 0.17527246187692 0.183518241304780 0.180898399210408 0.177571422976244 1 1 + 26614299 26615378 26614803.909 26612290 26615947 + gene protein_coding_gene FALSE TRUE AT1G70570.1 anthranilate phosphoribosyltransferase, putative similar to Os02g0131200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045789.1); similar to glycosyl transferase, putative [uncultured bacterium 439] (GB:AAR37657.1); contains domain Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain (SSF52418); contains domain Nucleoside phosphorylase/phosphoribosyltransferase N-terminal domain (SSF47648); contains domain GMP SYNTHASE-RELATED (PTHR11922); contains domain ANTHRANILATE PHOSPHORIBOSYLTRANSFERASE (PTHR11922:SF1); contains domain no description (G3D.3.40.1030.10); contains domain no description (G3D.1.20.970.10) 0.0780485212517807 0.944504952500822 0.37128550908684 1 1.21493979991102 15.7665899050295 0.0780485212517807 0.0687379865430485
AT3G53900_at 5.1208652158865 5.20399058250146 3.94540353675054 3.68733753971219 4.39645692837467 4.57361653825302 5.43965535356652 5.25427558941811 5.33951569878575 5.07743624479635 6.26916766310144 7.10450477300982 5.44092379342314 6.20378163665784 7.48073300215885 5.90128366891781 4.92891970155457 5.9694166733844 5.21687222425572 0.219639938225129 0.211220556465634 0.228475834693824 0.225637243647363 0.222226270905824 0.227819915765845 0.221734115556929 0.222661482017906 0.217789838530428 0.217275059721073 0.213345802007739 0.212911470863070 0.230965331844164 0.220379435238665 0.217455862127617 0.216369545821593 0.223853501559874 0.213253670010879 0.218922181819375 3 3|0 -|/ 19967919 19969468 19968664.833 19967634 19970019 - gene protein_coding_gene FALSE TRUE AT3G53900.1|AT3G53900.2 uracil phosphoribosyltransferase, putative / UMP pyrophosphorylase, putative / UPRTase, putative similar to ATUK/UPRT1, ATP binding / kinase/ uracil phosphoribosyltransferase/ uridine kinase [Arabidopsis thaliana] (TAIR:AT5G40870.1); similar to Uracil phosphoribosyltransferase (UMP pyrophosphorylase) (UPRTase) (GB:P93394); contains InterPro domain Uracil phosphoribosyl transferase; (InterPro:IPR005765); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836) -0.0764632040785845 -0.943744905431538 0.371651963822223 1 1.21426333087797 10.3895082038772 -0.0764632040785845 0.064579555707349
AT2G17550_at 5.3530470793034 6.41631528636898 5.09814360864705 5.48887640660781 6.78959722349213 6.07418171823639 5.33052511025079 5.57556281766436 6.60409595080724 5.69860992625921 7.18954866605017 6.09480160191411 6.13195765999139 6.55982354176752 5.70234361567702 6.50830049725468 5.40219529305869 6.51423732530695 6.06996310260278 0.247894538899599 0.241292204223237 0.261744663106532 0.254442483833159 0.244734864166659 0.267384034712957 0.240921299755535 0.240043698692587 0.256237616249818 0.246686757502491 0.243789767158604 0.241887421916979 0.249105810383873 0.244724154750566 0.249616021202332 0.248341065479591 0.248910187929373 0.252922646446609 0.240185045006178 2 2 - 7641703 7642094 7641890.182 7641356 7644914 - gene protein_coding_gene FALSE TRUE AT2G17550.1|AT2G17550.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20240.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93803.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22715.1); similar to Os03g0130700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048856.1)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20240.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93803.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAM22715.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF93804.1) 0.166257598876725 0.943736786618297 0.371655879723188 1 1.21425610718158 11.9593431654967 0.166257598876725 0.235702372143564
AT1G55830_at 5.86634157749787 5.74619894880172 5.40109162336146 5.5969654641406 5.88684034027859 5.83067030753437 5.93703140952536 5.30186365397722 4.83736640621867 5.18410451840841 5.34740986130689 5.17581290786179 5.31627435610123 5.1350333710791 5.21706075447156 5.4501656672267 5.42367942569196 5.25555382536476 5.14962189596864 0.217502156828581 0.218705849809458 0.216196136080262 0.215456624875147 0.212985139681276 0.213146263314905 0.218459586750210 0.220492372941033 0.228348636509154 0.211945635622420 0.216127934452769 0.211945635622420 0.217215603746962 0.218775975433567 0.215628126115113 0.211945635622420 0.218235532413647 0.224254451045671 0.226782490411440 1 1 - 20871614 20872420 20871995.364 20871584 20873983 - gene protein_coding_gene FALSE TRUE AT1G55830.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to HPr serine phosphorylation site [Medicago truncatula] (GB:ABE89314.1); contains InterPro domain Protein of unknown function DUF812; (InterPro:IPR008530) 0.099562933658821 0.943725222339156 0.371661457508518 1 1.21424581797475 10.8694527713079 0.099562933658821 0.117294041285302
AT3G47120_at 7.21707080723661 7.1376083792108 7.35404523560368 7.1683756631752 7.38619786422953 7.15271484727643 7.29500136032115 7.05196591202722 6.9180953283148 7.31602868320065 7.23205034172414 7.2451407021136 7.01310685417104 7.18211683053732 7.07307726625212 7.40015208467563 7.56776600025072 7.11288763300223 7.25430606237517 0.162226165452324 0.162470934470814 0.161886566889025 0.163581238633629 0.172694111533972 0.165892601761258 0.167093847978761 0.164271686596291 0.174068063124023 0.174183249805847 0.170791929877582 0.16244061339151 0.161176605129166 0.173950855622930 0.168009869798432 0.168077217665497 0.166188984899993 0.180029804384474 0.164034491005497 3 3 - 17362416 17362993 17362672.364 17362126 17363807 - gene protein_coding_gene FALSE TRUE AT3G47120.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G19960.1); similar to Os03g0826400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051763.1); similar to RNA binding motif protein, X-linked 2 [Mus musculus] (GB:NP_775552.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0776994886664539 0.943640571947205 0.371702288709271 1 1.21417050415063 14.4159211279956 0.0776994886664539 0.0679926501687121
AT1G76080_at 11.7081184535861 11.7788275675926 11.8749098230636 11.8905073263606 11.8740603890893 11.7352137841743 12.2196970163563 12.2709282012813 12.3108954299059 12.2707484889727 12.3961647899282 12.2450974351112 12.4001142747534 12.2392820686699 12.1569191315333 12.4590709922913 12.2732219876334 12.2379399000762 12.2679567661725 0.06303188344238 0.0639258070435845 0.0651165954940972 0.0684302796165982 0.0651301118982973 0.0661296615980818 0.0675567425719187 0.0651911926033791 0.0645570133498236 0.0659293977412052 0.0669575518884729 0.066503548685679 0.0643517084665139 0.0665566811005195 0.0668036641428817 0.06303188344238 0.0661154843682254 0.0647734883265328 0.0663902910285817 1 1 - 28552959 28553853 28553200 28552680 28554313 - gene protein_coding_gene FALSE TRUE AT1G76080.1 ATCDSP32/CDSP32 (CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD); thiol-disulfide exchange intermediate similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to CDSP32 protein (Chloroplast Drought-induced Stress Protein of 32kDa) [Solanum tuberosum] (GB:CAA71103.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0664719424414564 -0.943321489959936 0.371856227888423 1 1.21388666380535 24.211121095613 -0.0664719424414564 0.0285126005385252
AT3G03990_at 10.7928844061206 10.9051465514325 10.5304225678900 10.6027488486209 10.6435493306075 10.4781782749796 10.1685634038241 10.3775863899995 9.5007205458608 9.3107351963691 8.99352834447291 8.92644458634163 9.19426905726198 9.24684533086525 8.58747810619734 9.8831017497049 9.27554932061276 8.97062774629936 9.0330253944087 0.146804460185432 0.142418790305951 0.147923474553890 0.147471902387509 0.137515357946561 0.142927282212812 0.147520468002043 0.137515357946561 0.14941643118332 0.152928950618954 0.141726645446554 0.142466297282318 0.143039242045527 0.142887045044809 0.145228084933073 0.137515357946561 0.142270913494870 0.144864410684997 0.142856919396956 3 3 + 1034002 1034534 1034261.364 1033775 1034913 + gene protein_coding_gene FALSE TRUE AT3G03990.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G37470.1); similar to hydrolase [Platanus x acerifolia] (GB:CAJ91149.1); similar to Os03g0203200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049306.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.0720418071565261 -0.942243786719212 0.37237650597139 1 1.21292855416400 19.7704970929005 -0.0720418071565261 0.0515900522814738
AT4G31010_at 5.75689263038188 6.1302531887985 5.44863261627393 5.73052239829808 6.18970349692185 6.22508454417951 5.3497248794993 5.5766063417583 5.06896075998558 5.48383384517578 4.94130840738007 4.86019244332111 5.24997390590854 4.77734732243083 4.80773773812464 5.07485760482078 4.60115535601315 4.94904728769873 5.27496622578548 0.312059325424044 0.300542431392733 0.303212695556125 0.307329152643156 0.315868427972423 0.328961176893454 0.310402398346845 0.305109503062711 0.316377766184074 0.311517964056138 0.316798517429429 0.306222290807774 0.300338814111190 0.308691623795847 0.300338814111190 0.300338814111190 0.314480033985961 0.322233594158235 0.319345188016405 4 4 + 15107541 15108015 15107732.5 15106650 15108642 + gene protein_coding_gene FALSE TRUE AT4G31010.1|AT4G31010.2 DNA binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54890.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE81273.1); similar to CRS2-associated factor 2 [Zea mays] (GB:AAP22136.1); similar to Os08g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061110.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54890.1); similar to Os08g0188000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061154.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE81273.1); similar to Os08g0174900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061110.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.0865506324805997 -0.941452320905811 0.372758939171916 1 1.21222547304383 10.8927389046112 -0.0865506324805997 0.0901857195545719
AT1G54220_at 5.86706952722298 5.98269173674235 5.37797659330399 5.31951199485554 5.88019374669853 4.79420872442038 6.54858632280069 6.17936816569877 5.15877270755709 5.81893344842069 5.70195307718247 6.46511641223509 5.60919688130868 6.19583191870151 6.07662937620168 6.31714823681204 6.0973174619148 5.88292932669792 5.61434903888394 0.169298167088755 0.172865079968708 0.169380579373932 0.173833337086033 0.170983253912706 0.180513639785203 0.166976272405292 0.169483085091184 0.191273526261432 0.166976272405292 0.172034355111916 0.168079501698866 0.175912324415583 0.174839097230122 0.175951129919131 0.172274444763963 0.184475613763066 0.171275612811762 0.17548120514588 1 0|1 /|- 20250286 20250953 20250565.667 20249704 20253977 - gene protein_coding_gene FALSE TRUE AT1G54220.1|AT1G54220.2 dihydrolipoamide S-acetyltransferase, putative|dihydrolipoyllysine-residue acetyltransferase Identical to Dihydrolipoyllysine-residue acetyltransferase component 3 of pyruvate dehydrogenase complex, mitochondrial precursor (EC 2.3.1.12) (Pyruvate dehydrogenase complex E2 subunit 3) (PDCE2) (E2) (Dihydrolipoamide S- acetyltransferase component 3 of pyruvate dehydrogenase complex) (PDC- E2) [Arabidopsis Thaliana] (GB:Q5M729;GB:Q8L787;GB:Q94IP5;GB:Q9SLL0); similar to dihydrolipoamide S-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT3G13930.1); similar to dihydrolipoamide S-acetyltransferase [Zea mays] (GB:AAD46491.1); similar to Os06g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056555.1); similar to Dihydrolipoamide succinyltransferase [Medicago truncatula] (GB:ABE80470.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Dihydrolipoamide acetyltransferase, long form; (InterPro:IPR006257); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) -0.144437950934358 -0.940565109505168 0.373187979299965 1 1.21143789764726 11.5306760521357 -0.144437950934358 0.199761768196370
AT2G28605_at 5.35696836079806 5.88626842389134 5.5576678391633 5.36085053242719 6.46809602134276 5.66706060293706 6.95113585386072 6.7243879813582 6.79781175668757 6.56829871875805 6.94807988781014 7.30961612209587 7.01608852228314 7.17916507640119 7.2130303397379 7.15347709111747 5.79266426175433 6.69115216085561 6.75164411952686 0.200430094971211 0.187285223216769 0.202102931737930 0.194391929387148 0.195404690442393 0.207751999542206 0.193883131297701 0.205023564446249 0.194010221391777 0.194248797088559 0.194079933119291 0.196982717963231 0.193062813359959 0.191596554894412 0.200790064179948 0.190131275629940 0.210725390485113 0.194609034008112 0.192346221512608 2 2 + 12262207 12262723 12262407.909 12261965 12262914 + gene protein_coding_gene FALSE TRUE AT2G28605.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79267.1) -0.129640210788355 -0.940233261779796 0.373348548317131 1 1.21114346919435 12.8059681425129 -0.129640210788355 0.174087138477875
AT4G28610_at 7.46566708600883 7.45501097732348 7.58728554760141 7.73159059665927 8.20586075277306 7.95034204670516 8.41318433502674 8.20640701557762 8.21028841220458 7.91983500912797 7.97992892386668 8.19855033468968 7.20781529567436 8.0006530928143 7.9134947248055 8.36632335403836 7.90931507272852 8.03036780472808 8.1250758918659 0.132282149285532 0.134813541837020 0.135437665344297 0.133081210018322 0.132694851356627 0.128857558037888 0.133349822298019 0.128249712220609 0.137443338582311 0.134123323338832 0.131701419532034 0.138402824132629 0.146733226230726 0.138171935188543 0.133523662205694 0.133298207969746 0.134891142711381 0.136645495646081 0.138781266162241 4 4 - 14133176 14134163 14133605.8 14132862 14135265 - gene protein_coding_gene FALSE TRUE AT4G28610.1 PHR1 (PHOSPHATE STARVATION RESPONSE 1); transcription factor Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT2G20400.1); similar to transfactor [Nicotiana tabacum] (GB:BAA75684.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0752789899320314 -0.939676544374304 0.373618037525434 1 1.21064971335121 15.8948548012849 -0.0752789899320314 0.0621514854150155
AT2G01470_at 6.7138631431507 6.97053392395915 6.83910289821092 6.97502392737307 7.2975134237401 6.53723053327946 7.07984784638889 6.64182731469769 6.08250645289469 6.46435501767102 6.7022979056161 6.70358746460302 6.32611667327919 6.71250868869147 6.89224794337415 6.3059158744647 6.57156988721124 6.36443187408534 6.62374961589206 0.211658408159248 0.197604289071824 0.193280376361113 0.194038961574176 0.199732173670473 0.219428072299003 0.199657160619485 0.202480999909888 0.201666769560264 0.194906996998714 0.20039271463845 0.192906956345064 0.202649304857942 0.200418627492683 0.204885799320393 0.201915594252755 0.201397507477647 0.210394065204331 0.203537152214817 2 0|2 /|- 212244 213293 212719.857 211969 214471 - gene protein_coding_gene FALSE TRUE AT2G01470.1 STL2P (SEC12P-LIKE PROTEIN); nucleotide binding Sec12p-like protein (GTP exchange protein) that functionally complements yeast sec12 null mutant. Protein is localized to the ER. Identical to Sec12-like protein 2 (STL2P) [Arabidopsis Thaliana] (GB:Q39221;GB:Q7EP29;GB:Q8VZ72); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50650.1); similar to WD-40 repeat family protein / St12p protein, putative [Arabidopsis thaliana] (TAIR:AT5G50550.1); similar to St12p protein (GB:AAA32871.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.121415241015752 0.937808773066648 0.374523209482017 1 1.20899487921034 13.3631369935508 0.121415241015752 0.159946560650892
AT1G75420_at 5.20214402085911 5.27237934590194 4.43805186945586 4.84018149970614 5.2483619915643 5.00274759480478 4.98472987851461 5.42517882192094 5.25312165717372 4.81485864703816 5.62632478472535 5.64431912655205 5.11121060090753 5.26376637403422 5.50581134201876 5.46521453584862 5.02007556295397 4.18189140788025 5.17647949039998 0.203157343974837 0.199205287835405 0.200765967280918 0.196201501793733 0.198435141956519 0.210029896931484 0.198483058097525 0.196201501793733 0.202137929580662 0.20267438672237 0.19687454739531 0.198995540933659 0.196201501793733 0.199711548857302 0.200795090357071 0.200642422060614 0.215928269819030 0.206066425435343 0.204654600377606 1 1 + 28310567 28310952 28310731 28308958 28311164 + gene protein_coding_gene FALSE TRUE AT1G75420.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT1G19710.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Putative first mannosyl transferase, WbaZ [Burkholderia xenovorans LB400] (GB:YP_558793.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) -0.0964660796276169 -0.937752511579185 0.374550500243575 1 1.20894507260156 10.2061285353755 -0.0964660796276169 0.112280733735739
AT3G54010_at 8.94345492225419 9.06053230476922 8.80489481627411 8.69165345430747 8.40475471123441 8.42288828213134 7.68292445459828 7.8959761728057 8.52081851932786 8.63805996526868 8.51435255243845 8.38469598678134 8.05877483026079 8.39900062359733 8.21804256102167 8.22654188900152 8.14710878086463 8.3717354329949 8.68856079962164 0.145900179229578 0.148025322515391 0.142407652112956 0.149607208934124 0.136168038117415 0.147748256286204 0.144928118641330 0.141593796338168 0.143661907286468 0.136408478872298 0.138154787817392 0.141482013324496 0.142855665120506 0.142419784310032 0.145148507796404 0.138081227350851 0.139922703042593 0.144659773681751 0.139132736643855 3 3 + 20015178 20016006 20015698.364 20011839 20016161 + gene protein_coding_gene FALSE TRUE AT3G54010.1|AT3G54010.2 PAS1 (PASTICCINO 1); FK506 binding / peptidyl-prolyl cis-trans isomerase Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced. Identical to Peptidyl-prolyl isomerase PASTICCINO1 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (PAS1) [Arabidopsis Thaliana] (GB:Q7DMA9;GB:O64403;GB:Q93ZT7;GB:Q9M326); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to Os03g0367000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050182.1); similar to Peptidylprolyl isomerase, FKBP-type [Medicago truncatula] (GB:ABE81489.1); similar to Peptidylprolyl isomerase, FKBP-type; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85899.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|Identical to Peptidyl-prolyl isomerase PASTICCINO1 (EC 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase) (PPIase) (Rotamase) (PAS1) [Arabidopsis Thaliana] (GB:Q7DMA9;GB:O64403;GB:Q93ZT7;GB:Q9M326); similar to ROF1 (ROTAMASE FKBP 1), FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT3G25230.1); similar to Os03g0367000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050182.1); similar to Peptidylprolyl isomerase, FKBP-type; Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85899.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0702278301196617 -0.937728761194077 0.374562021281488 1 1.20892404781274 16.9413072282266 -0.0702278301196617 0.0465161731698249
AT3G47836_at 9.2193773358609 9.37686884825768 8.62183628187893 9.03893972186272 9.2343894411248 8.93919745135752 8.85419322399751 9.37529473376995 9.20063625678063 9.18545893869892 9.56395557207936 9.5293875003763 9.16560863196375 9.14843706720726 9.13124017941855 9.24148390761551 8.65003870400343 8.89235134644625 8.99590294084942 0.154226783548078 0.145755611682718 0.173132882994400 0.154265106239596 0.149246256639135 0.168635555576942 0.157036408468726 0.1505264767657 0.162205674331963 0.151660649221158 0.149109608563933 0.150101824513385 0.151864814254963 0.161835719120918 0.150876271466085 0.149350826169133 0.171909134506690 0.157629933560641 0.153122839781859 3 0|3 /|- 17661350 17661452 17661400.667 17661245 17662750 - gene protein_coding_gene FALSE TRUE AT3G47836.1|AT3G47836.2 unknown protein -0.104931329943186 -0.93745035486041 0.374697092365218 1 1.20867762308427 18.228834917638 -0.104931329943186 0.129208683656497
AT1G06070_at 5.77834426356066 6.18486325517444 5.79259174281499 6.00454238788379 6.14766969154591 6.08946619988977 5.46236323933427 5.49006981796489 6.57478085925366 5.63962926848783 6.19455795331554 5.98918628887844 6.15524684180567 5.35186244721918 6.36883057524651 6.07172230810675 5.74346898312538 6.14287764901684 6.14044900598924 0.235477616172743 0.229309226075837 0.232070725079787 0.234600188392075 0.229309226075837 0.233650434119769 0.237327157533001 0.229309226075837 0.237734037995236 0.242825930614315 0.238806941780580 0.229309226075837 0.230463057581426 0.241986203418446 0.230901799044692 0.229309226075837 0.240250068525899 0.231060271005172 0.232171703607298 1 1|0 -|/ 1835207 1836133 1835416.5 1834828 1837647 - gene protein_coding_gene FALSE TRUE AT1G06070.1 bZIP transcription factor, putative (bZIP69) similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G31370.4); similar to Transcription factor RF2a (GB:Q69IL4); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0817950572270474 0.936090061567084 0.375357563272293 1 1.20747443143823 11.9289915791459 0.0817950572270474 0.0801181545344074
AT4G26550_at 5.99557459418949 6.4690541796817 5.33932869410284 5.8415417050893 5.69720665957025 5.57463045401523 4.45217478085191 5.13997382587842 5.32361752014288 4.46146579451252 4.63689756069161 5.2060325760054 4.8613069299405 5.32070474279873 5.3842916529758 4.88823437025985 4.63442722698716 5.46530298485897 4.90067179582805 0.276539806516445 0.259510188857041 0.267645983095891 0.266570484119191 0.263743062381305 0.268126360284494 0.259881983634793 0.264863248515475 0.289550146530655 0.266774800656770 0.260769898778569 0.258172089891511 0.258172089891511 0.262345797533671 0.26995889878864 0.259898421762101 0.27591733778463 0.268450615471842 0.263198377610964 4 4|0 -|/ 13402773 13404107 13403435.25 13402521 13404351 - gene protein_coding_gene FALSE TRUE AT4G26550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G56020.1); similar to Os06g0300300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057449.1); similar to Phosphatidylinositol-4-phosphate 5-Kinase family protein [Tetrahymena thermophila SB210] (GB:XP_001021172.1); similar to Os06g0608600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058041.1); contains InterPro domain SFT2-like; (InterPro:IPR011691) 0.126690292557148 0.935651508681456 0.37557067811999 1 1.20708682472656 10.536136341202 0.126690292557148 0.169954594932737
AT2G02160_at 8.5952641257804 8.7894695383469 8.62029980325133 8.56151535291898 8.94464087117028 8.89346113865425 8.25767455032446 8.46339984250906 8.88360488732502 8.88650374020439 8.62227424832115 8.62057666940132 8.22682944334968 8.5431988201203 8.36018391844686 8.69440240529373 8.47572058801734 8.52385323949191 8.86763329778161 0.127048766825154 0.127847048343317 0.128197750044423 0.129911328986564 0.133940919844545 0.134643106127216 0.127136708088646 0.132728340433471 0.135460978580249 0.126048309321380 0.132744988910709 0.127665711071423 0.131740541657521 0.134784428384692 0.128836287675498 0.129804465222884 0.130601515201815 0.128938513442919 0.127082776892585 2 2 - 553486 553979 553760.455 553109 556112 - gene protein_coding_gene FALSE TRUE AT2G02160.1 zinc finger (CCCH-type) family protein similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to H0624F09.12 [Oryza sativa (indica cultivar-group)] (GB:CAH67704.1); similar to Os04g0671800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054221.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) -0.0711700573116096 -0.933990208149058 0.376378791306898 1 1.20561983108229 17.3345292653656 -0.0711700573116096 0.0507831011063204
AT4G25450_at 6.85893062336757 6.88349793422881 6.34819277739145 6.41439661382717 6.82941061517072 6.18505836305498 6.77789706122824 6.94285829978797 5.7606904200133 5.98148592919402 5.59048364431721 5.94766718464414 6.40340118595787 6.07976611619633 6.3689487563155 6.43140941608762 6.44545764789848 6.09887015244962 6.09159361965349 0.166264720499360 0.170652947381242 0.167959085144205 0.167155236923651 0.168523191659807 0.172761937893809 0.170521285371938 0.17285729715473 0.172104690260893 0.172671945606426 0.169554392054995 0.165189686370301 0.164298332281175 0.174547525854187 0.164269799134289 0.165204828633804 0.172446691930718 0.171842714955827 0.177554204311453 4 4|0 -|/ 13009872 13013722 13011849.267 13009705 13013978 - gene protein_coding_gene FALSE TRUE AT4G25450.1|AT4G25450.2|AT4G25450.3 ATNAP8 (Arabidopsis thaliana non-intrinsic ABC protein 8); ATPase, coupled to transmembrane movement of substances|ATNAP8 (Arabidopsis thaliana non-intrinsic ABC protein 8) member of NAP subfamily Identical to Non-intrinsic ABC protein 8 (TAP-related protein 1) (NAP8) [Arabidopsis Thaliana] (GB:Q8LPQ6;GB:O65615;GB:Q67ZJ9;GB:Q67ZN9;GB:Q682F1); similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to Os07g0464600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059586.1); similar to P-glycoprotein [Homo sapiens] (GB:AAA59575.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439)|Identical to Non-intrinsic ABC protein 8 (TAP-related protein 1) (NAP8) [Arabidopsis Thaliana] (GB:Q8LPQ6;GB:O65615;GB:Q67ZJ9;GB:Q67ZN9;GB:Q682F1); similar to ATTAP2 (Arabidopsis thaliana transporter associated with antigen processing protein 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT5G39040.1); similar to Os07g0464600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059586.1); similar to P-glycoprotein [Homo sapiens] (GB:AAA59575.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0976854319644945 -0.933134307339935 0.376795627159153 1 1.20486485008572 12.7127005373089 -0.0976854319644945 0.115751261705560
AT1G12650_at 4.57819197507655 5.35746503362859 5.10992117227425 5.29382354973813 5.43588832570942 5.40055890022054 4.70438939694181 5.54239876879961 4.34154955431982 4.47469294671295 4.2985775787212 4.94979104570872 4.57033733009813 4.65298352902535 4.34683397147727 4.41569435085747 4.68818271856712 3.96104204196748 4.57051556430113 0.238242473374852 0.237360375618472 0.232325859445903 0.2253849935594 0.227280932684475 0.233120057251044 0.223878532519466 0.231408890785539 0.237768341790182 0.228657505051791 0.231205106705486 0.222978280194568 0.226142521846862 0.234976608665127 0.220126557344203 0.222700350594035 0.227023900074902 0.23217546183089 0.228214371099739 1 1|0 +|/ 4306424 4307643 4307137.286 4305931 4308003 + gene protein_coding_gene FALSE TRUE AT1G12650.1|AT1G12650.2|AT1G12650.3|AT1G12650.4 similar to PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] (GB:XP_783665.2); similar to Os09g0525200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063717.1); contains InterPro domain Protein of unknown function DUF947; (InterPro:IPR009292) 0.143807162866076 0.933043466394143 0.376839887812296 1 1.20478475272939 9.65167114492235 0.143807162866076 0.200668390221314
AT1G16680_at 6.30822215408875 6.59125730074774 6.1934061212027 6.20496216973435 7.19994322668894 6.90853842403772 6.80087516663684 6.25153273565568 6.23034915024513 6.61898734139355 6.50775426084921 6.33193029637497 5.9854545876808 5.78420629492458 6.1286898506028 6.29829966136845 6.40024038494418 5.94803723364167 6.67815074102 0.218152509152402 0.206759091375658 0.207135507175662 0.20630075511408 0.213908135138748 0.207929443622162 0.210467752677290 0.212984225713046 0.204916705404548 0.213936361227177 0.205565357102634 0.204075948419522 0.226322896806863 0.209043143132159 0.204075948419522 0.206991801225878 0.208574090154731 0.216478700312833 0.209552825639413 1 1|0 +|/ 5704489 5705437 5705117 5702806 5705831 + gene protein_coding_gene FALSE TRUE AT1G16680.1 DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative similar to DNAJ heat shock N-terminal domain-containing protein / S-locus protein, putative [Arabidopsis thaliana] (TAIR:AT1G79030.1); similar to S-locus protein 5 [Brassica rapa] (GB:BAA85454.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0986725967271087 -0.930798879107018 0.377934731790705 1 1.20280760953268 12.8984616534414 -0.0986725967271087 0.118252989224506
AT1G04620_at 5.47413483366732 5.63898134716303 4.36039675007249 4.65703169318206 5.80526864273266 5.70034571718155 6.48804283107802 5.80581029771055 3.61089996195503 4.53608156401781 4.17891924775351 4.94971527080846 4.0854701179355 4.55477245664959 4.37401711867042 4.88019062487012 4.46501286583086 4.54135354974695 3.83813367934676 0.268267301849635 0.263670236220789 0.274163617659118 0.26279473113343 0.263441347768830 0.284996359914985 0.26077566703921 0.271939982251183 0.267145972655230 0.264604618466636 0.264942203313021 0.262851994362041 0.271368515839512 0.266117705998223 0.275193599286545 0.263540899714335 0.271015055114837 0.264569597594435 0.268290944655038 1 0|1 /|- 1283808 1284954 1284454.125 1282740 1286583 - gene protein_coding_gene FALSE TRUE AT1G04620.1 coenzyme F420 hydrogenase family / dehydrogenase, beta subunit family similar to OSJNBb0026L04.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE01504.2); similar to OSJNBb0026L04.9 [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL54311.1); similar to coenzyme F420 hydrogenase/dehydrogenase beta subunit-like [Trichodesmium erythraeum IMS101] (GB:YP_720646.1); contains InterPro domain Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; (InterPro:IPR007525); contains InterPro domain Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; (InterPro:IPR007516) -0.106169310926283 -0.930593329429153 0.378035108999978 1 1.20262674166665 9.74061141825165 -0.106169310926283 0.133107805935110
AT2G03800_at 4.87946102814142 5.19253737369702 5.69031967757483 5.4753945360978 5.72946825085444 5.27936299419532 5.67893599993695 5.38710630784761 5.33632707345338 4.96014970376411 5.35750473623828 4.81114205210528 5.09843544310261 5.17031401501773 5.06874644845978 5.17399647874668 5.121829207568 5.05889570912096 5.22546391379284 0.179820694009212 0.185918702336768 0.184612933774835 0.190496898527124 0.176705150756068 0.182135561894275 0.176896992010563 0.181774134716354 0.179461737766852 0.181149879350271 0.185178853160923 0.176005582618724 0.177501186524497 0.182863556507061 0.178127749770093 0.177360527384858 0.176591700800806 0.179572038341282 0.179762055388178 2 2 + 1157349 1158497 1158092 1156710 1158931 + gene protein_coding_gene FALSE TRUE AT2G03800.1 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. Identical to Ethanol tolerance protein GEKO1 (GEK1) [Arabidopsis Thaliana] (GB:Q9ZPQ3;GB:Q76KI8); similar to Protein of unknown function DUF516 [Medicago truncatula] (GB:ABE92350.1); contains InterPro domain Protein of unknown function DUF516; (InterPro:IPR007508) 0.0963769841164934 0.930014143905553 0.378318050643269 1 1.20211727504742 10.5548673918590 0.0963769841164934 0.113739040763146
AT4G09760_at 10.0225019488315 10.1313990373520 10.4642514888171 10.3930008194619 10.6848352893228 10.4393240202655 10.4891886759731 10.4127697655072 9.69317987651644 10.3186594774642 10.1970690296025 9.68243283894943 10.2407870499149 10.2988794568387 9.26516763766352 10.1662213767739 10.1711217162453 9.5252486881879 10.0897890334012 0.0874286584574678 0.0868063839687864 0.091986467332871 0.093099679368385 0.0918884111202987 0.0946154928413857 0.087932969604881 0.0915409235471962 0.107952108968545 0.089261092620244 0.0869791172178803 0.0874008813322707 0.0902725924912642 0.088847856742655 0.0902976235381826 0.0892617111099107 0.097261164954638 0.099700350185857 0.0890025344121636 4 4|0 -|/ 6148968 6149970 6149410.4 6148755 6151396 - gene protein_coding_gene FALSE TRUE AT4G09760.1|AT4G09760.2|AT4G09760.3 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71697.1); similar to GmCK2p (GB:AAC49375.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Aminoglycoside phosphotransferase; (InterPro:IPR002575)|similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71697.1); similar to GmCK2p (GB:AAC49375.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Choline/ethanolamine kinase; (InterPro:IPR002573) 0.0704389463478037 0.927892401986945 0.379355877614461 1 1.20025310566660 20.368279932391 0.0704389463478037 0.0498718401555265
AT1G03130_at 13.3603403823418 13.4504251612810 13.2788224828279 13.2827402694398 13.3181376219982 13.3174160392530 13.7156726175927 13.7447143706216 14.0260958500074 13.9882174216615 14.2141431220287 14.1721348973642 14.025916686489 14.1003752826598 14.1743772967282 14.0878990216905 13.9484229394142 14.2683120100567 13.9335623904058 0.0571524500810602 0.057646344436085 0.0570544385231927 0.0577971605555393 0.0563922073346206 0.0603936638984788 0.0597355296604818 0.058487271173916 0.0604496285371477 0.0560013619556601 0.0556206440355345 0.056265693757586 0.0568926978711459 0.0589097968975037 0.0583829586827021 0.0554801491318883 0.0576260165147879 0.0578034841082037 0.0559315898061891 1 1 - 753670 753985 753850.545 753307 754198 - gene protein_coding_gene FALSE TRUE AT1G03130.1 PSAD-2 (photosystem I subunit D-2) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD2) Identical to Photosystem I reaction center subunit II-2, chloroplast precursor (Photosystem I 20 kDa subunit 2) (PSI-D2) (psaD2) [Arabidopsis Thaliana] (GB:Q9SA56;GB:Q9SUI3); similar to PSAD-1 (photosystem I subunit D-1) [Arabidopsis thaliana] (TAIR:AT4G02770.1); similar to unnamed protein product [Spinacia oleracea] (GB:CAA32182.1); contains InterPro domain Photosystem I protein PsaD; (InterPro:IPR003685) -0.0635932966086172 -0.926985517440859 0.379800103595398 1 1.19945735480774 27.4868200570422 -0.0635932966086172 0.0163941877336219
AT3G26650_at 13.5849189696387 13.7229868363722 13.6353652526965 13.6049963436229 13.3478049053830 13.4323950797045 13.940714684747 14.1386084330068 13.8194213446376 14.1742002356721 14.2914754136985 14.3718522267550 14.2613335463293 14.1629294606569 14.2991976366127 14.3114301962475 14.1398555781516 13.8975235658295 14.0455610870972 0.0681146177008353 0.067751943613291 0.0705318576478507 0.06702317317402 0.0667785636778932 0.0692074910283931 0.0703069336222291 0.0683283743840578 0.074182112876165 0.069028849348956 0.0698973165503248 0.0667785636778932 0.0667785636778932 0.07291899111632 0.0689065503516958 0.0667785636778932 0.069569946488677 0.0749501695408582 0.0670504527734624 3 3 + 9797442 9797950 9797746.727 9796308 9798282 + gene protein_coding_gene FALSE TRUE AT3G26650.1 GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes one of the two subunits forming the photosynthetic glyceraldehyde-3-phosphate dehydrogenase (GAPDH) and as such a constituent of the supramolecular complex with phosphoribulokinase (PRK) thought to be linked by a small peptide encoded by CP12-2. GapA-1 is coordinately expressed by light with PRK and CP12-2. The enzyme activity, tested in leaf protein extracts dropped significantly after external sucrose treatment for the photosynthetic GAPDH (NADPH-dependent) but not for the cytosolic GAPDH (NADH-dependent). Identical to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GAPA) [Arabidopsis Thaliana] (GB:P25856;GB:Q41184;GB:Q9LSE6); similar to GAPA-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G12900.1); similar to glyceraldehyde-3-phosphate dehydrogenase A subunit [Glycine max] (GB:ABA86963.1); similar to unnamed protein product [Pisum sativum] (GB:CAA33264.1); similar to Glyceraldehyde-3-phosphate dehydrogenase A, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit A) (GB:P12858); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) -0.06888901084496 -0.926888382260612 0.379847706528440 1 1.19937215999245 27.7909791092318 -0.06888901084496 0.0445602955283677
AT2G01350_at 9.2776158943719 9.1160318949011 9.47024881129567 9.2096759598305 8.94934440914022 8.71000258060573 9.07841432253478 9.12077682594335 8.39946795374026 9.10438248550523 8.76671856039188 8.95759139427164 8.74477466511986 9.0010908670855 8.99462354091826 9.262255277798 8.98575022790975 9.03755676807045 8.75530643054504 0.145693188488709 0.137921879003343 0.146904972371159 0.142265710214829 0.147837179532158 0.148784318829778 0.144608089454185 0.143967375332816 0.145783430003241 0.141079197325998 0.142646361946363 0.139116723830056 0.144259557151321 0.145561506894592 0.140872935827702 0.134023044384122 0.157544176116967 0.139648646873563 0.145910781818531 2 0|2 /|- 165350 166244 165794.125 165140 167258 - gene protein_coding_gene FALSE TRUE AT2G01350.1|AT2G01350.2|AT2G01350.3|AT2G01350.4 QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE); nicotinate-nucleotide diphosphorylase (carboxylating)|QPT (QUINOLINATE PHOSHORIBOSYLTRANSFERASE) At2g01350 encodes quinolinate phosphoribosyl transferase involved in NAD biosynthesis as shown by heterologous expression in E. coli. similar to quinolinate phosphoribosyltransferase [Nicotiana tabacum] (GB:BAA92153.1); contains InterPro domain Nicotinate-nucleotide pyrophosphorylase; (InterPro:IPR004393); contains InterPro domain Quinolinate phosphoribosyl transferase; (InterPro:IPR002638)|similar to putative quinolinate phosphoribosyltransferase [Nicotiana tabacum] (GB:CAH04307.1); contains InterPro domain Nicotinate-nucleotide pyrophosphorylase; (InterPro:IPR004393); contains InterPro domain Quinolinate phosphoribosyl transferase; (InterPro:IPR002638) 0.0761755392728687 0.926381916126891 0.380095980332052 1 1.19892806730378 17.9774375636408 0.0761755392728687 0.0677098774654022
AT4G15475_at 7.62224140353959 7.31755565622712 7.3573359661165 7.4464623609458 8.22101839224985 7.59643603398223 7.34260518428924 6.91919610793243 7.06829707680224 7.25131468698444 7.02794108164228 7.16076527946086 6.77139663507723 6.91224543184198 6.54899923417897 7.6918688629772 7.52884035159574 7.43758386713439 7.48934332829045 0.201373275658947 0.193421621104049 0.199643067972448 0.197035635137167 0.192418805806547 0.196771825991947 0.205459649596838 0.199375420317617 0.199450626080509 0.191467649607089 0.194300659335185 0.195517220328221 0.192051423316646 0.206006857093479 0.208490840218075 0.191467649607089 0.21504535262616 0.196312830124222 0.192821559602278 4 4|0 +|/ 8847875 8848659 8848381.6 8845873 8848867 + gene protein_coding_gene FALSE TRUE AT4G15475.1 F-box family protein (FBL4) similar to EBF2 (EIN3-BINDING F BOX PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT5G25350.1); similar to Leucine Rich Repeat family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95013.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.110108497978023 0.926094448865333 0.380236951741594 1 1.19867608945304 14.6801597833342 0.110108497978023 0.141667761650037
AT1G22200_at 7.59263845300524 7.83649936724765 8.10918028987847 8.16887759819732 8.47298223038184 7.67934957938272 8.59778727589005 8.08313503361603 6.04962317775789 7.30409989739626 7.13548647111543 7.10038306781088 7.23267774775025 6.90693339360607 7.00590209068993 7.24569104532267 6.4345240889865 6.92366654699675 7.1320036838774 0.210963782531988 0.215102030386517 0.214410746523613 0.21483372379687 0.210765942098344 0.211163028282175 0.213897139886225 0.211541253011573 0.242157205173521 0.21937705360645 0.220265756211088 0.210592313231271 0.213450972547466 0.222071575674855 0.228837850137294 0.213714248023028 0.224116744642911 0.21190243768094 0.215631410494372 1 1|0 -|/ 7838061 7839082 7838620.889 7837580 7840777 - gene protein_coding_gene FALSE TRUE AT1G22200.1|AT1G22200.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G36050.1); similar to Serolo (GB:ABF95668.1); similar to Os04g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052965.1); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) 0.124832431105654 0.92435758597394 0.381089504783783 1 1.19715498675479 14.9809230498892 0.124832431105654 0.169359575998513
ATCG01120_at 8.40853261761634 9.30633283891802 8.77779378595993 9.14528888925848 9.25992407932105 8.78680023214641 9.52994474336536 9.28283836393341 9.8351890485217 10.1427279645187 10.5812079681605 11.0320146172934 10.0316420685835 10.4502715746522 10.6106127364351 10.6125455479755 10.0417317317339 10.0596720259169 10.0626686618537 0.125760809188952 0.118423237714950 0.132100019165454 0.121865777694283 0.121476442425241 0.127512213276347 0.119007194647022 0.123771537329467 0.124247429489372 0.118423237714950 0.121038325214690 0.118423237714950 0.120649333669533 0.118423237714950 0.123321968463880 0.119071645292157 0.121079355646401 0.124794233226181 0.118763845482643 C C - 123362 123499 123425.182 123296 123562 - gene protein_coding_gene FALSE TRUE ATCG01120.1 encodes a chloroplast ribosomal protein S15, a constituent of the small subunit of the ribosomal complex Identical to Chloroplast 30S ribosomal protein S15 (rps15) [Arabidopsis Thaliana] (GB:P56805); similar to ribosomal protein S15 [Eucalyptus globulus subsp. globulus] (GB:YP_636356.1); contains InterPro domain S15/NS1, RNA-binding; (InterPro:IPR009068); contains InterPro domain Ribosomal protein S15, bacterial chloroplast and mitochondrial type; (InterPro:IPR005290); contains InterPro domain Ribosomal protein S15; (InterPro:IPR000589) 0.137236665629523 0.923910970883723 0.381308954262863 1 1.19676422247757 19.2826773648858 0.137236665629523 0.191615015892525
AT2G32950_at 8.55007595522593 8.5901703131183 8.73244125910319 8.72743748196637 8.88343679421494 8.76792565821209 9.30219313207932 8.94485230025655 7.23322855856744 8.25360858017343 7.91381260675488 8.02500827833752 8.19689899784585 8.2661181027998 7.7627872002522 8.28438974104415 8.52052397297863 7.6423890345318 8.08495870330694 0.163881512382289 0.154575785605030 0.161560051595224 0.156168431913873 0.154518404209238 0.165580505914487 0.16349130568339 0.156816141311788 0.186128301470251 0.163449107409200 0.157951065209996 0.149553888521353 0.156138189667102 0.151161900100387 0.154412128159599 0.149553888521353 0.162192956093157 0.158927311371994 0.155770054049013 2 2|0 +|/ 13988821 13990294 13989801.667 13985010 13990612 + gene protein_coding_gene FALSE TRUE AT2G32950.1 COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1) Represses photomorphogenesis and induces skotomorphogenesis in the dark. Contains a ring finger zinc-binding motif, a coiled-coil domain, and several WD-40 repeats, similar to G-beta proteins. The C-terminus has homology to TAFII80, a subunit of the TFIID component of the RNA polymerase II of Drosophila. Nuclear localization in the dark and cytoplasmic in the light. Identical to E3 ubiquitin-protein ligase COP1 (EC 6.3.2.-) (Constitutive photomorphogenesis protein 1) (COP1) [Arabidopsis Thaliana] (GB:P43254;GB:O23974;GB:O23975;GB:O48770); similar to SPA4 (SPA1-RELATED 4), signal transducer [Arabidopsis thaliana] (TAIR:AT1G53090.2); similar to E3 ubiquitin ligase protein COP1 (Constitutive photomorphogenesis protein 1) (GB:P93471); similar to regulatory protein (GB:AAA32772.1); similar to constitutively photomorphogenic 1 protein [Pisum sativum] (GB:CAB89693.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.075106542169813 0.92358653138765 0.381468429047255 1 1.19648045039036 16.7791947480224 0.075106542169813 0.0653651743614502
AT2G16340_at 5.254595419452 4.69834982429652 5.62260368249652 4.92528969515295 4.77695195786755 5.24010497931396 5.05786332423288 5.07420231766513 6.18674947795689 5.37724606155232 5.58099236254421 5.77679682030349 6.09909827548688 5.3543398666073 5.81310457895264 5.37188001435903 6.04050883401547 6.38415615647806 5.44015921832083 0.231073963832351 0.235163191663400 0.235676650754965 0.223910406669252 0.221983387647422 0.244423056789822 0.224823191375594 0.234052923560108 0.225866370389049 0.222768024853571 0.229527391154161 0.227027614713090 0.219846691258939 0.226700603934709 0.22097686640907 0.217553652892182 0.221889153873615 0.219375136158472 0.220298694623596 2 2|0 +|/ 7080217 7080469 7080368.6 7080216 7080566 + gene protein_coding_gene FALSE TRUE AT2G16340.1 unknown protein 0.127271442473076 0.92358514100803 0.381469112578054 1 1.19647923446243 10.8165757498281 0.127271442473076 0.17395511645089
AT4G04920_at 5.71535117231139 5.75507493340014 5.43901206688976 5.65888452485547 5.88677398038539 5.33316669511222 5.09988979720092 5.24032578711039 4.73461355572878 4.83043995143804 4.87609926465257 4.91586344217737 5.39011375555773 4.89155293474849 4.82987973997264 4.9880837724052 5.0356348618978 4.75419959975034 5.14408303768322 0.253582066321296 0.252176243153676 0.248056886760651 0.251359757643370 0.253812420515099 0.268201061295549 0.256104653338828 0.263463147380757 0.263490322967137 0.255033148243996 0.249289693566997 0.248602243714375 0.256182236809102 0.252061053182399 0.258981437086212 0.246749944264489 0.258245433461660 0.257163156720322 0.261886412096502 4 4|0 +|/ 2504078 2504748 2504462.5 2497929 2504798 + gene protein_coding_gene FALSE TRUE AT4G04920.1 similar to putative glycine-rich protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93675.1); similar to WD40-like [Medicago truncatula] (GB:ABE83509.1); similar to hypothetical protein, 3'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAL58272.2); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044) 0.0919659003751266 0.92230807805065 0.382097311812969 1 1.19536302623389 10.4476718378309 0.0919659003751266 0.106132771581453
AT3G04760_at 9.70403029009519 9.7629603841818 9.40893719304943 9.55359174401691 9.77622742047226 9.40737307234682 9.8418254466129 9.78774143793713 9.56421901144243 9.37572279741193 9.35207957787537 9.7137272202051 9.16658076208165 9.3657823883938 9.4389443541452 9.6569219758198 9.31949919407552 9.36320652381612 9.07324137892605 0.123253135721279 0.126116173805242 0.131594072455678 0.125561427013300 0.123672293579146 0.145440116615483 0.125783208656673 0.130359211630993 0.136191548551642 0.132211089480813 0.125818281809915 0.123910363062674 0.124429993729642 0.131114286417839 0.129974056459121 0.124059752423024 0.13703124212398 0.130026861993763 0.126881387073203 3 3 - 1303893 1304390 1304133.727 1303581 1305884 - gene protein_coding_gene FALSE TRUE AT3G04760.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G09900.1); similar to putative pentatricopeptide (PPR) repeat-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15828.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0766210059719796 -0.921849224605777 0.382323209836581 1 1.19496227155372 19.0352461129949 -0.0766210059719796 0.0699484093767705
AT2G04890_at 6.29328636514704 6.33975673439299 6.24403151791194 6.18647582555007 6.58251663681918 6.74977381641701 5.63921293126042 6.05422279980646 5.53594110373308 5.71042430595024 5.61726583154971 5.40543829831434 5.34224207435782 5.54015907119643 5.00865362843907 5.41531018233328 6.07119483984384 5.19665994132279 5.70048789516265 0.214903077548206 0.213485827851823 0.213401576794741 0.217063971674410 0.208327187475396 0.208327187475396 0.218185983272519 0.214746180216769 0.224153105881983 0.21503654156112 0.21634664354818 0.213177808850483 0.208994786323763 0.215248225584444 0.227004296164283 0.216600594172896 0.219926938790696 0.222313288711523 0.226469908003424 2 2 - 1720577 1721137 1720837.909 1720358 1722601 - gene protein_coding_gene FALSE TRUE AT2G04890.1 SCL21 (SCARECROW-LIKE 21); transcription factor Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS7 [Solanum lycopersicum] (GB:ABD72963.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.0798720616635822 0.921563207480583 0.382464067994590 1 1.19471255023058 11.8104428709306 0.0798720616635822 0.0784837354215334
ATCG00220_at 12.2662589286003 12.5705107563783 12.620494126467 12.5995242379073 12.0430970646521 12.3320144688549 12.0574395342402 12.5832360443907 13.1103589759983 13.2412399597479 13.6496155659851 13.533005332314 13.3500967636172 13.1140198329142 13.1679937207865 13.4013462810126 13.2354511554273 13.4075362165808 13.2282536940864 0.12540998319235 0.124805506265502 0.129541768680839 0.12503447985048 0.121244905337911 0.126356841846164 0.129270392372591 0.126391115716038 0.125419723919329 0.121886600743204 0.127902403060781 0.124687881251461 0.121387274860886 0.128856030536555 0.122036958324549 0.124216011309030 0.133438924955919 0.131805972695618 0.125944655249425 C C - 28731 28779 28760.182 28707 28811 - gene protein_coding_gene FALSE TRUE ATCG00220.1 PSII low MW protein Identical to Photosystem II reaction center protein M (PSII-M) (psbM) [Arabidopsis Thaliana] (GB:P62109;GB:P12169); similar to photosystem II M protein; psbM [Oryza sativa (japonica cultivar-group)] (GB:AAS46110.1); contains InterPro domain Photosystem II protein PsbM; (InterPro:IPR007826) 0.0967600286017336 0.920971069019165 0.382755805202779 1 1.19419575261475 25.6594055544483 0.0967600286017336 0.116467736232364
AT2G22650_at 5.21472229461392 4.64165613160025 4.6446622223813 4.43670607082527 4.96118000607752 5.05264942154246 4.16084766427594 3.71423478118297 4.61520168339761 4.99500443260853 4.32696558327619 4.73609180313447 4.41036886032283 4.44129488643988 4.7935831016925 5.07168141624357 4.50633451855143 3.93100540586146 5.62009365005506 0.232400478825067 0.236614844458682 0.245296496298847 0.243837728435644 0.232765742329206 0.255248427829593 0.233384697552754 0.242497122369775 0.241737128635430 0.239430168432973 0.234807730657489 0.236978640900874 0.232400478825067 0.234140021275505 0.242196464909683 0.232400478825067 0.241649104199029 0.25133675002003 0.238930592846157 2 2|0 -|/ 9631867 9632557 9632078.9 9631666 9634049 - gene protein_coding_gene FALSE TRUE AT2G22650.1 FAD-dependent oxidoreductase family protein similar to putative D-amino acid dehydrogenase [Oryza sativa (japonica cultivar-group)] (GB:BAD72311.1); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076) -0.104333339729207 -0.920642711191782 0.38291765160313 1 1.19390928857911 9.40529846687613 -0.104333339729207 0.131735447082480
AT1G04260_at 6.1010903915993 7.10600725616224 5.94532415841962 6.2685259119881 6.79367696646922 6.43335138376019 5.3400790457348 6.58334854583066 5.95902579275101 4.79822577536704 5.6419163246133 5.90178446737194 5.61716098875959 5.66389846736284 5.51861898023529 5.51129105242413 5.18312933846644 5.82591259468827 5.13747765881058 0.261973763625510 0.250292030693362 0.259327516826597 0.256258820550238 0.253605037715191 0.262571201815825 0.257515673930182 0.250320525308996 0.251334697121967 0.259957237494962 0.250292030693362 0.252547166855185 0.257756356658129 0.262796422042172 0.257681089986522 0.250292030693362 0.269347648901343 0.255049883471089 0.253807178623102 1 1 - 1140773 1141163 1140978.909 1140527 1141364 - gene protein_coding_gene FALSE TRUE AT1G04260.1 MPI7 (CAMV MOVEMENT PROTEIN INTERACTING PROTEIN 7) Encodes protein that interacts with CaMV movement protein. Colocalizes in the cytoplasm with the movement protein. Has similarity to mammalian proteins (such as the rat PRA1) which have been described as rab acceptors. similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT1G17700.1); similar to Prenylated rab acceptor PRA1 [Medicago truncatula] (GB:ABE79235.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.193654623212438 0.919376390178436 0.383542282516156 1 1.19280530166937 11.7745290086871 0.193654623212438 0.289051586805631
AT4G30790_at 6.8907753672189 7.16699544640204 6.95713085095178 6.91527538791992 7.60284861749705 7.7695248925368 6.61380904084579 6.28512575225472 7.57357654934571 7.78357139524415 7.7189339882458 7.58762186529352 7.27622609842632 6.94082358484726 6.9174777709908 7.82218974021063 7.52470467764117 6.82694840952373 7.85883343454675 0.201361129565505 0.199876967878613 0.203737305277970 0.194886690335806 0.198504155453817 0.200544037897907 0.195697654485252 0.200530651687251 0.204839435593149 0.196652148264221 0.197827933174538 0.193639028220095 0.193639028220095 0.193639028220095 0.194877544250382 0.200327061351685 0.203489826048452 0.206014175094710 0.196153487950418 4 4 - 14993407 14994096 14993687.182 14993092 14997791 - gene protein_coding_gene FALSE TRUE AT4G30790.1 similar to protein transport protein-related [Arabidopsis thaliana] (TAIR:AT4G27595.1); similar to Ubiquitin [Medicago truncatula] (GB:ABE79505.1); similar to Os02g0179800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046086.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.0801119213656116 0.91723296268437 0.38460124467592 1 1.19093943516040 14.5579487827582 0.0801119213656116 0.0800297082384631
AT3G10970_at 9.35714193985955 9.30898824109481 9.36282871403637 9.24367855360188 9.72052838348122 9.23366428548319 9.89821236060739 9.8092546671337 9.2293639779394 9.29947152005943 9.2432677535717 9.37998957684167 9.14799190891376 9.3118586032874 9.1966362502578 9.60897986809973 9.17496796664964 9.11184674253064 9.17792283090513 0.124441563313243 0.124650733407569 0.127808630068059 0.129445691086178 0.122678188049869 0.133875395342181 0.127130671673312 0.125052023884748 0.130078327580308 0.126997819933141 0.119938671404413 0.119938671404413 0.127070816835028 0.134922968261801 0.122210349019513 0.119938671404413 0.131146922059321 0.128832937329913 0.130712503383051 3 0|3 /|- 3433285 3433952 3433632.429 3433078 3436284 - gene protein_coding_gene FALSE TRUE AT3G10970.1|AT3G10970.2|AT3G10970.3 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G11570.2); similar to Os05g0168300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054753.1); similar to genetic modifier [Zea mays] (GB:AAG17894.1); similar to putative genetic modifier [Zea mays] (GB:AAL75477.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834)|similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G11570.2); similar to Os09g0569100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063975.1); similar to Histidine acid phosphatase; HAD-superfamily hydrolase subfamily IA, variant 3 [Medicago truncatula] (GB:ABE92120.1); similar to Os05g0168300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054753.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.083434046944403 -0.915402786993781 0.385507122261253 1 1.18934903334687 18.7455513648641 -0.083434046944403 0.0884892751375051
AT3G05270_at 6.02821632171118 6.28399243384622 5.86058114105062 5.96481124311331 5.9777334300174 5.95041092935254 5.77451288576238 6.10568563733961 5.05244591225990 5.97017524626455 5.9396662836567 6.04513330150913 5.53960423389333 5.94084932708282 5.60173087748538 5.86854740970097 6.00832095210876 5.34685547365664 5.54021730044892 0.173741678127175 0.172777025329511 0.167762749711871 0.174587167516223 0.171129353667970 0.175676981925693 0.175312781782672 0.172804238030846 0.184769616071957 0.170232665755023 0.173620009222280 0.170459188544483 0.173583705348244 0.179245796695489 0.167762749711871 0.169873399953611 0.173324104429363 0.173414161236148 0.172780859988532 3 3 - 1500839 1501384 1501074.182 1500809 1503326 - gene protein_coding_gene FALSE TRUE AT3G05270.1 similar to myosin heavy chain-related [Arabidopsis thaliana] (TAIR:AT1G77580.2); similar to Protein of unknown function DUF869, plant [Medicago truncatula] (GB:ABE86171.1); contains InterPro domain DNA topoisomerases I, dispensable insert, eukaryotic-type; (InterPro:IPR009054); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Protein of unknown function DUF869, plant; (InterPro:IPR008587) 0.0778373478071072 0.914713316762873 0.385848788457483 1 1.18875055568502 11.6468853204631 0.0778373478071072 0.074776286272518
AT2G27030_at 9.5293604680347 9.33583368648778 9.14651677580462 9.2217349759088 9.42955494743866 9.15352482636833 9.08915791963784 9.20683702535635 9.73331586274428 9.33885956101193 9.99780188103495 10.075366137888 9.59966878615104 9.70336856367233 9.75501880206288 9.67012467845995 9.12802697329794 9.85809747758896 9.49903708180586 0.114338080010384 0.116756228242137 0.123944721293741 0.124553716770774 0.115010498484573 0.118759759072783 0.118267039862002 0.115008875519284 0.125928702347532 0.116648987418993 0.119559136311093 0.115204873587896 0.115212140407224 0.120793152114937 0.123601581329401 0.115438504437207 0.124038630111337 0.118139856518184 0.118206275693568 2 2 + 11539149 11540085 11539833.636 11539082 11541382 + gene protein_coding_gene FALSE TRUE AT2G27030.1|AT2G27030.2|AT2G27030.3 CAM2 (CALMODULIN-2); calcium ion binding encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin-3 (GB:AAA32765.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048)|Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to ATCAL4 (calmodulin-related protein 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G41110.1); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to Calmodulin-related protein (GB:P27164); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0736161335832122 0.914694219148203 0.385858255381039 1 1.18873398364678 18.8876509103164 0.0736161335832122 0.0631475003903682
AT3G10550_at 4.56940171837223 4.62296138289056 4.66368204358189 4.45044428426879 5.44747715268637 4.60452439914807 4.88037764441542 4.84829934106761 5.4760394926243 5.27587177197467 5.33143778961935 5.35300609802231 4.9117913288405 5.41955831540202 4.42966767864507 5.5265399551296 4.76667332578493 4.80315107921853 5.31649447221653 0.191285289515215 0.190584729257408 0.200127151460434 0.201052938818723 0.187133384462948 0.18824777696887 0.191053494130921 0.192086057887822 0.192258233277787 0.189914974518822 0.191268928671024 0.191735927443819 0.187133384462948 0.203615625140646 0.199794400789175 0.189683785264513 0.199029185712190 0.192462002194275 0.190136639125450 3 3 - 3293221 3293849 3293428.636 3292904 3296874 - gene protein_coding_gene FALSE TRUE AT3G10550.1 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase similar to inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase [Arabidopsis thaliana] (TAIR:AT5G04540.1); similar to myotubularin related protein 2 [Danio rerio] (GB:NP_571446.1); similar to Os08g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062478.1); contains InterPro domain Myotubularin-related; (InterPro:IPR010569); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) -0.113567550518775 -0.91465947057889 0.385875481107893 1 1.18870383114035 9.97282771677284 -0.113567550518775 0.150859339078557
AT3G53710_at 7.41614583288358 7.26476573672758 7.20516763373827 7.08522233548106 7.51922510138276 7.30966601754564 7.2613941314973 7.36024182619923 7.14087511077824 6.85889336153001 7.329615268446 7.23629433469989 6.98442423972256 7.22993728753802 7.33029958590899 7.2838438242185 6.91481478859074 6.75777932325172 6.84345863572725 0.177915439494565 0.177048807129485 0.181695774771344 0.172276748331204 0.177138458987696 0.188962089136237 0.171230149554106 0.178211862929273 0.182230266749949 0.176204256960355 0.180622977563309 0.176930165956788 0.176372612640891 0.174959882070051 0.175736661747115 0.175849505843190 0.187912890540693 0.177511747064903 0.180271231468167 3 3|0 -|/ 19914720 19915507 19915029.8 19914291 19916467 - gene protein_coding_gene FALSE TRUE AT3G53710.1|AT3G53710.2 AGD6; DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes. similar to ASP1 (PDE1 SUPPRESSOR 1), DNA binding [Arabidopsis thaliana] (TAIR:AT2G37550.2); similar to unknown [Solanum tuberosum] (GB:ABA46771.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.0699085512059487 0.911990949118698 0.387199997753342 1 1.18639102650721 14.3432878023780 0.0699085512059487 0.0522007810248139
AT2G29550_at 5.19503269800023 4.95542588622739 3.95008286900806 3.85781335619677 4.45209302674523 4.23400865016488 5.2863344703049 5.55717213415702 5.98177214600103 5.68615790536277 8.30522688451405 7.77573291866374 6.83102591996704 6.84639931770506 7.77532425886658 6.53994396019984 5.49371469539034 7.11561945258577 5.74785812628650 0.239029303765958 0.220382580044121 0.233097699140358 0.223973528859384 0.218991869671351 0.218991869671351 0.222832183098411 0.225582180496917 0.225046901741864 0.219023030855408 0.23077942995066 0.22818927863491 0.220672814404896 0.223094715668391 0.232077453032649 0.218991869671351 0.233022901596018 0.226254214804738 0.218991869671351 2 2 - 12651411 12651838 12651659.455 12651124 12653114 - gene protein_coding_gene FALSE TRUE AT2G29550.1 TUB7 (tubulin beta-7 chain) Encodes a beta-tubulin that is expressed in leaves, roots and flowers. Identical to Tubulin beta-7 chain (Beta-7 tubulin) (TUBB7) [Arabidopsis Thaliana] (GB:P29515); similar to TUB3 (Tubulin beta-3), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62700.1); similar to TUB2 (Tubulin beta-2), structural molecule [Arabidopsis thaliana] (TAIR:AT5G62690.1); similar to TUB8 (tubulin beta-8) [Arabidopsis thaliana] (TAIR:AT5G23860.1); similar to beta tubulin [Setaria viridis] (GB:CAE52517.1); similar to Tubulin beta chain (Beta tubulin) (GB:P93176); similar to Beta-tubulin [Zinnia elegans] (GB:BAA82637.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Beta tubulin; (InterPro:IPR002453); contains InterPro domain Tubulin; (InterPro:IPR000217) 0.0775594392297342 0.911329275195413 0.387528927053417 1 1.18581839862224 11.1313134622856 0.0775594392297342 0.0748026502702912
AT1G01710_at 8.19126482729949 8.15355318077008 7.92625488038825 7.79165636037205 8.10233341640355 7.73905491854688 7.87513142257545 7.7262813110658 7.32901934326194 7.98010322289462 7.6765091134125 7.54042258227544 7.6314423531679 7.62066860387328 7.54746815474642 7.80353775506098 7.5718813969242 7.33564410684059 7.63158147643725 0.183508421056997 0.188277402998521 0.206675765937286 0.193608736960035 0.200759118713111 0.203620230663108 0.194319297369868 0.189018168500715 0.20843950396583 0.184944718057611 0.192534659797398 0.183501454298472 0.189839539244546 0.194519410420113 0.186472497570585 0.194891722574839 0.209685504138946 0.203632203818251 0.191276250625428 1 0|1 /|+ 264681 265986 265456.625 262828 267771 + gene protein_coding_gene FALSE TRUE AT1G01710.1 acyl-CoA thioesterase family protein similar to acyl-CoA thioesterase [Arabidopsis thaliana] (TAIR:AT4G00520.2); similar to hypothetical protein PaerP_01005464 [Pseudomonas aeru (GB:ZP_01292630.1); similar to Os04g0558400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053533.1); similar to OSJNBa0065O17.11 [Oryza sativa (japonica cultivar-group)] (GB:CAE03486.2); contains InterPro domain Acyl-CoA thioesterase; (InterPro:IPR003703); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595) -0.0763436903718122 -0.908909075636104 0.388733770318752 1 1.18372676335159 15.5571153425872 -0.0763436903718122 0.0721176222870077
AT4G34000_at 6.50951609246933 6.6826150121083 7.55675460609901 7.50656736294094 7.57030935989942 7.13709935577433 8.15994125446192 7.78900573344746 6.50477627582205 7.46202670933082 6.56963308031731 6.91422524456346 7.81737587002676 7.3227401229574 6.36452678748906 7.81934463278424 8.10794423000502 7.3826352770131 7.83158653596112 0.176607014356850 0.167926335169849 0.168754224995796 0.169452684964951 0.165892811781359 0.165204422175674 0.165445845110178 0.165663446807138 0.189983260856907 0.166629967111843 0.177793682405546 0.177638215073196 0.168422729968677 0.175965595076772 0.1793619084643 0.163569394526722 0.180390765506171 0.178050179054586 0.163569394526722 4 4|0 +|/ 16296826 16297951 16297243.2 16295435 16298260 + gene protein_coding_gene FALSE TRUE AT4G34000.1|AT4G34000.2|AT4G34000.3 ABF3/DPBF5 (ABSCISIC ACID RESPONSIVE ELEMENTS-BINDING FACTOR 3); DNA binding / protein binding / transcription factor/ transcriptional activator Encodes an ABA-responsive element-binding protein with similarity to transcription factors that is expressed in response to stress and abscisic acid. similar to ABF4 (ABRE BINDING FACTOR 4), DNA binding / transcription factor/ transcriptional activator [Arabidopsis thaliana] (TAIR:AT3G19290.1); similar to putative ripening-related bZIP protein [Vitis vinifera] (GB:CAB85632.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0892932316649448 0.907547530305525 0.389412773989687 1 1.18255203754061 14.6406925951580 0.0892932316649448 0.103507242770352
AT3G12050_at 8.28540063480139 8.13735975617833 8.06902565358506 8.15255929887074 8.17793233385955 7.98800580666725 8.3929688992663 8.29214384462771 8.0628164683617 8.29340312440464 7.982447915849 8.26939816983468 8.24994862752836 8.28204697186568 8.31344539068914 8.2192490773649 8.201030691687 8.43910968823838 8.24636610104633 0.124802111246969 0.137035350939190 0.133027253437910 0.128536665982711 0.132568990363045 0.143042920379727 0.124525215681975 0.129307985118380 0.141760089203320 0.124525215681975 0.137003716146654 0.128673415366806 0.130810739419440 0.130530528293956 0.135384145572457 0.126261427309915 0.137207398188081 0.127750061993372 0.128509904086503 3 3 + 3839834 3841270 3840212.727 3839108 3841472 + gene protein_coding_gene FALSE TRUE AT3G12050.1|AT3G12050.2 Aha1 domain-containing protein similar to DNA alkylation damage repair protein (ISS) [Ostreococcus tauri] (GB:CAL50217.1); similar to Os08g0464000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061992.1); contains domain FAMILY NOT NAMED (PTHR13009) -0.0681824208891011 -0.907100269465749 0.389636009997246 1 1.18216645694451 16.4096477607669 -0.0681824208891011 0.0474345797751427
AT3G02170_at 8.71306419877414 8.97250908432818 8.19966667628074 8.4463219815089 9.09861045729534 8.83642400154202 8.5765442001103 8.66308464513192 9.17822320598339 8.85126854535597 9.53695122517905 9.02942604287533 9.23948198535338 9.38249376074564 8.52763770814454 9.16589714636815 8.90123729936392 8.96757400840898 9.46477638499095 0.145242205357988 0.147107509502479 0.148643194031456 0.145870422767703 0.147400846145391 0.153056150380362 0.147640062087118 0.157599811103368 0.155682229865110 0.145080640190334 0.149735379675094 0.147930529858403 0.147184262614536 0.150390989702091 0.149304606891738 0.148032725261528 0.160321818672142 0.1552390400696 0.143326438293676 3 3 - 396406 396769 396603.182 396019 399786 - gene protein_coding_gene FALSE TRUE AT3G02170.1 LNG2 (LONGIFOLIA2) Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function. similar to LNG1 (LONGIFOLIA1) [Arabidopsis thaliana] (TAIR:AT5G15580.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96924.1); contains InterPro domain Moesin; (InterPro:IPR008954) -0.0784817006589733 -0.906639828016432 0.389865921136031 1 1.18176967416417 17.8175748768706 -0.0784817006589733 0.078235537735806
AT1G52360_at 5.49754446384782 6.29258951273986 5.70652192193453 5.60236296374417 5.51238161381617 5.08927575332557 6.1997552057712 5.83127172672274 6.159202801769 5.92701440257155 6.32885284544398 6.78753029738655 5.847204708506 6.34880781757628 6.35476734876418 5.93228330984773 6.21475688469132 6.19426937650979 5.96813363265609 0.218652127813617 0.214886559738076 0.222437167771241 0.228920675495620 0.222028844437359 0.221340227509327 0.219710205068032 0.220837905030147 0.223736357413955 0.21902628902836 0.225951705676636 0.215430975352114 0.220532211442535 0.22365879576492 0.217593140075255 0.215088390237768 0.236874785361554 0.217964818033872 0.220930519375086 1 1|0 +|/ 19508036 19509014 19508527.2 19502831 19509839 + gene protein_coding_gene FALSE TRUE AT1G52360.1 coatomer protein complex, subunit beta 2 (beta prime), putative similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT3G15980.3); similar to coatomer protein complex, subunit beta 2 (beta prime), putative [Arabidopsis thaliana] (TAIR:AT1G79990.1); similar to Coatomer protein complex, subunit beta 2 (beta prime) [Rattus norve (GB:AAH88397.1); similar to putative coatomer protein complex, subunit beta 2 (beta prime) [Oryza sativa (japonica cultivar-group)] (GB:BAD25014.1); similar to putative Gol (GB:BAD25013.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.122356268070057 -0.906024700235975 0.390173224117254 1 1.18123984585399 11.8510509048659 -0.122356268070057 0.169358933442318
AT1G29950_at 6.45763179242543 6.07050681989603 6.35624311460518 5.97065914029575 7.01716823662397 6.25419178950989 7.40598218309971 6.84259635965773 4.78633980806493 5.45335777139089 6.21913943853854 6.14968317796889 6.18319350550563 6.02671682268898 5.64686783823735 6.53488701912643 6.56667479600906 5.61397606964117 6.42989662682474 0.211180529814273 0.198732181916596 0.201592718844953 0.204820634065259 0.198732181916596 0.210313605956778 0.198732181916596 0.198732181916596 0.225077111100364 0.217118013582451 0.207236070118178 0.198732181916596 0.203351149377516 0.213804549604089 0.210837908617695 0.198732181916596 0.217587005780428 0.211387130631206 0.208859370583989 1 1 + 10493602 10494168 10493857.545 10491682 10494582 + gene protein_coding_gene FALSE TRUE AT1G29950.1|AT1G29950.2 transcription factor/ transcription regulator| similar to transcription factor/ transcription regulator [Arabidopsis thaliana] (TAIR:AT5G50010.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE90109.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.133248606429978 0.90527102142983 0.390549981922546 1 1.18059107637063 12.3839592972932 0.133248606429978 0.189419961596191
AT1G77250_at 5.24646113157195 5.14531739873409 5.11792808105639 4.89473840284335 5.52947293294734 5.09212275097271 5.04849954924691 5.51682613688555 5.30713594486694 4.54450132741433 4.9280837247395 5.30021809870926 5.11032615346123 4.94501773230471 5.0904132965945 4.92955834806505 4.82087849904213 4.57236742568505 5.36911412463515 0.236944722195773 0.241652680129682 0.240535253412334 0.235948102159394 0.23326450170794 0.241716572208074 0.235134145111044 0.233036032442617 0.253466002163244 0.234686558085192 0.234796181000901 0.230899806277926 0.231936483741077 0.238558197498093 0.231046332436584 0.231383135405615 0.239095814579063 0.243095523758970 0.232936858917972 1 1 - 29025343 29025859 29025604.091 29025159 29028368 - gene protein_coding_gene FALSE TRUE AT1G77250.1 PHD finger family protein similar to MBD9 (METHYL-CPG-BINDING DOMAIN 9), DNA binding [Arabidopsis thaliana] (TAIR:AT3G01460.1); similar to Os01g0547200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043287.1); similar to Os08g0105000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060783.1); similar to PHD finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82577.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain Endoplasmic reticulum ERp29-type, C-terminal; (InterPro:IPR013331) -0.0960932006508164 -0.904339035270223 0.391016236657643 1 1.17978942421979 10.2167666524309 -0.0960932006508164 0.118722141550558
AT2G17530_at 4.94774842660066 5.18275315648815 5.0419837623933 4.38821741329717 5.69127139169869 4.93569893309181 5.28943607502643 4.10381538939617 4.41466937828422 4.59650944283997 4.97391782490002 4.80708264215368 4.87029696903588 5.45180187726797 4.77832895410918 5.38462358294825 4.58820069973825 4.34040170705007 5.0069285622362 0.213742378221154 0.210562673493695 0.214097614222996 0.217455245010688 0.211449092729428 0.223668720430326 0.218572699991843 0.216571790623303 0.226320823426608 0.210247951369298 0.211949425886593 0.221289665372863 0.214918830157711 0.225325142913628 0.210333452323180 0.213657235093090 0.230876553550535 0.231516127995557 0.222890527900583 2 2 + 7634979 7635603 7635317 7633440 7636231 + gene protein_coding_gene FALSE TRUE AT2G17530.1|AT2G17530.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35500.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to Os09g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063873.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G35500.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); similar to Os09g0552300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063873.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.179991967136338 0.903898460828611 0.391236787126771 1 1.17941069507481 9.73363269013432 0.179991967136338 0.271382810448286
AT2G48160_at 6.17642330406422 6.04032562205076 5.87702895245241 6.56992389580491 5.93201730697026 5.99216637441172 6.54455161239372 6.85004861430166 6.32649382336985 5.46286185830391 5.92052581917468 6.5530709634418 6.6256550090303 6.54896040463697 6.49030801961369 6.4552324703227 6.71692017654574 6.02061811419295 5.90997884031822 0.213259091997444 0.202445843472364 0.218139300813143 0.210888464600533 0.205573324378755 0.232047933335997 0.202445843472364 0.202593853047474 0.220154410828358 0.215147547784456 0.205226560559305 0.212677037222808 0.206932480190797 0.213254466006284 0.210152276788782 0.212287009972587 0.222494276719332 0.224262077881416 0.216110602985516 2 2 - 19697177 19697787 19697481.818 19696479 19703891 - gene protein_coding_gene FALSE TRUE AT2G48160.1 PWWP domain-containing protein similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G63070.1); similar to PWWP; Regulation of nuclear pre-mRNA protein [Medicago truncatula] (GB:ABE77466.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain PWWP; (InterPro:IPR000313) 0.103290021164882 0.90340013954003 0.39148635350069 1 1.17898250558106 12.4059054833648 0.103290021164882 0.133552049444037
AT3G20310_at 6.84366939103408 7.94939004686598 7.36127208323156 7.22471469110468 8.39782311661009 7.59978384808067 7.49812906544921 8.02381536571578 6.87732669904537 6.90401209922812 7.43803509568572 7.33157373345207 7.42341457828363 7.26460819874474 6.83655056384771 7.21318461367424 6.30638461063488 6.74791454616481 6.61232878506928 0.2403784371876 0.239643496825157 0.245346001768024 0.240555206725197 0.242623673895429 0.250822963001644 0.240266947575191 0.241543997027216 0.248333852899948 0.239643496825157 0.244725061217596 0.245544508592513 0.239643496825157 0.249196312963963 0.248304853487422 0.243269770402338 0.248470940116825 0.244564605505749 0.239643496825157 3 3 - 7085976 7086435 7086207.818 7084812 7086811 - gene protein_coding_gene FALSE TRUE AT3G20310.1 ERF7 (ETHYLINE RESPONSE FACTOR7); DNA binding / protein binding / transcription factor/ transcriptional repressor Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box?mediated transcription together with AtSin3 and HDA19. Identical to Ethylene-responsive transcription factor 7 (Ethylene-responsive element-binding factor 7) (EREBP-7) (AtERF7) (ERF7) [Arabidopsis Thaliana] (GB:Q9LDE4); similar to ATERF3/ERF3 (ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 3), DNA binding / protein binding / transcription factor/ transcriptional repressor [Arabidopsis thaliana] (TAIR:AT1G50640.1); similar to AT-rich element binding factor 2 [Pisum sativum] (GB:AAV85852.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.169733257801938 0.903324239450115 0.391524375401322 1 1.17891730417582 14.5463734195158 0.169733257801938 0.254012112062186
AT2G36880_at 9.62070963706883 9.6430140901524 9.6261021216373 9.73607194196031 9.33076738720304 9.15628449174029 10.7233012467738 10.9307246369891 9.65278341297554 10.0235831189354 10.7034915146917 11.0552127162052 10.6226596254132 10.7019378841461 10.8844039939391 10.6405946063287 10.5223339717011 10.5541406171197 9.74150594469613 0.113448025957758 0.100671538184841 0.103797175735334 0.101437188701203 0.102152399529238 0.112942367292655 0.104730902174426 0.100645442549442 0.115623312984711 0.101377837266305 0.102462806529357 0.102528879883802 0.0982213231386006 0.106754485131601 0.102977732857657 0.102774181648685 0.104031086193445 0.103272414675818 0.0982213231386006 2 2 - 15486800 15487313 15487083.727 15486445 15488491 - gene protein_coding_gene FALSE TRUE AT2G36880.1 MAT3 (METHIONINE ADENOSYLTRANSFERASE 3); methionine adenosyltransferase similar to SAM1 (S-adenosylmethionine synthetase 1), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT1G02500.2); similar to MTO3 (S-adenosylmethionine synthase 3), methionine adenosyltransferase [Arabidopsis thaliana] (TAIR:AT3G17390.1); similar to MAT2/SAM-2 (S-adenosylmethionine synthetase 2) [Arabidopsis thaliana] (TAIR:AT4G01850.2); similar to S-adenosyl-L-methionine synthetase-like [Solanum tuberosum] (GB:ABB02634.1); similar to S-adenosylmethionine synthetase 3 (Methionine adenosyltransferase 3) (AdoMet synthetase 3) (GB:P43282); similar to S-adenosylmethionine synthetase [Brassica juncea] (GB:AAK71234.1); contains InterPro domain S-adenosylmethionine synthetase; (InterPro:IPR002133) 0.06875422843997 0.902346287047116 0.392014515295317 1 1.17807759892703 20.1041491233884 0.06875422843997 0.0507671698866572
AT3G63220_at 5.53588041453151 5.7359140111221 4.97036657588914 5.262706077136 4.64467812145815 5.40699511246376 4.1927176933814 5.00043265068665 4.1690119736561 4.55185441572544 4.92033620291043 4.81073563153114 5.33589805870707 4.7815815795209 4.76050817486908 4.70487132984249 5.19815134974026 4.35266258743106 4.88022463664781 0.18893449850667 0.191626797397091 0.198653824850768 0.193190278269347 0.191120523101616 0.200487912173598 0.186765542553014 0.196909366528033 0.193240865052490 0.189387924217970 0.194215624066995 0.189497625930465 0.188268799465382 0.206785521945001 0.195177540705034 0.187293597796393 0.192002638643778 0.190614469859606 0.187404550535989 3 3 - 23368521 23369046 23368813.636 23368367 23370213 - gene protein_coding_gene FALSE TRUE AT3G63220.1|AT3G63220.2 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT1G16250.1); similar to Os10g0388200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064494.1); similar to Putative protein [Oryza sativa (japonica cultivar-group)] (GB:AAK13101.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) 0.139673192474473 0.902326231651356 0.392024571476949 1 1.17806038636083 9.78960639358134 0.139673192474473 0.201740954038888
AT4G32250_at 7.51103374231492 7.49854374064322 7.80862764576006 7.55366561944693 8.04379781152622 7.878559994182 7.69994257244692 7.7290901743658 7.54912507160758 7.720584070733 7.6526521431801 7.32977399359005 7.97646076348796 7.27441575825522 7.30454307730019 7.79630549857869 7.90599682643057 7.62485385855699 7.77306765988565 0.156056535318423 0.152807894779066 0.163331746009871 0.155210115133613 0.153960674154873 0.159701928057061 0.153191278286574 0.157306159357231 0.162484437890018 0.149604817983321 0.149604817983321 0.155030466236125 0.153856555997540 0.159950948486399 0.155680018395994 0.15563756157257 0.158101022092742 0.152665331011357 0.149980619862230 4 4 - 15570318 15570843 15570614.273 15570050 15573329 - gene protein_coding_gene FALSE TRUE AT4G32250.1|AT4G32250.2|AT4G32250.3 protein kinase family protein|kinase similar to KEG (KEEP ON GOING), protein binding / protein kinase/ ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT5G13530.1); similar to Protein kinase-like [Medicago truncatula] (GB:ABE94418.1); similar to Protein kinase; Zinc finger, RING-type [Medicago truncatula] (GB:ABE84394.1); similar to Os06g0639500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058160.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0693549247332415 0.902225295066812 0.392075185943272 1 1.17797376213452 15.3599330829180 0.0693549247332415 0.0528638106459998
AT3G02730_at 12.042685915034 11.8431953483085 11.9865670738415 11.9559028682986 11.9585790109551 11.8639812096615 12.3449587203468 12.3555940967213 12.2305293306832 12.3245603027040 12.6978152237795 12.5753898217037 12.5155232330543 12.6784577371360 12.5404929192636 12.6018143677095 12.3012912124908 12.6682625070816 12.1523971065776 0.0700942418523371 0.0712091700607329 0.0694762125592059 0.0730560949107007 0.0691306113494598 0.073769980871209 0.0718854850046015 0.06879125591238 0.0753401382884388 0.0708641106514481 0.06879125591238 0.06879125591238 0.0691290776056936 0.06886097725142 0.06879125591238 0.069204935439318 0.0740733536464614 0.0733907122089516 0.0754717439306084 3 3|0 -|/ 588582 589499 589124.8 588415 589692 - gene protein_coding_gene FALSE TRUE AT3G02730.1 ATF1/TRXF1 (THIOREDOXIN F-TYPE 1); thiol-disulfide exchange intermediate Identical to Thioredoxin F-type 1, chloroplast precursor (TRX-F1) [Arabidopsis Thaliana] (GB:Q9XFH8;GB:Q9M8R5); similar to ATF2/TRXF2 (THIOREDOXIN F2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT5G16400.1); similar to Thioredoxin F-type, chloroplast precursor (TRX-F) (GB:O48897); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.0656004925211366 0.902070429258942 0.392152852262956 1 1.17784087089465 24.4480379259454 0.0656004925211366 0.0386181999803624
AT3G60830_at 5.80904331567499 6.45818848313036 5.76132094930967 6.15319218959249 5.71014302822114 5.99453096258919 5.22046889601401 6.04559843890648 5.62030778620869 5.26029808209193 5.44441868784023 5.81376211152687 6.00890430620337 5.68431140301356 5.86848036645555 5.76611804324069 5.76188840198145 5.03382090854283 5.36994288975439 0.210756280411617 0.214040376008421 0.219910488587970 0.218569136829338 0.210756280411617 0.225005782704654 0.211268596879487 0.217347021999714 0.253032400041950 0.22714097652687 0.216327915378502 0.219150805522299 0.214524369961374 0.22895156811965 0.221856276488161 0.210756280411617 0.214822635408564 0.212599649049774 0.214217283049487 3 3 + 22486273 22486937 22486657.455 22485049 22487420 + gene protein_coding_gene FALSE TRUE AT3G60830.1 ATARP7 (ACTIN-RELATED PROTEIN 7); structural constituent of cytoskeleton Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission. similar to ACT3 (ACTIN 3), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT3G53750.1); similar to ACT1 (ACTIN 1), structural constituent of cytoskeleton [Arabidopsis thaliana] (TAIR:AT2G37620.2); similar to Actin/actin-like [Medicago truncatula] (GB:ABE93682.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.138667720789444 0.901846483713335 0.39226518214778 1 1.17764873467243 11.4388420902392 0.138667720789444 0.200076023554528
AT2G29310_at 8.55026892657645 8.90100130138625 8.73956758163362 8.57165151901691 9.68300058405683 9.08162036399661 10.2787559390348 10.1280938089994 8.91169492147187 9.67092613417334 10.0636717445965 9.77587706403138 10.0741587809386 10.2466045771426 9.78831036581773 10.1276272030840 9.94768926646868 10.0814975056126 9.5224233856616 0.127773025122086 0.127441379645958 0.133361145819222 0.129875353170162 0.121376154068548 0.144799799682374 0.122857767228332 0.120315860607927 0.139087656241468 0.123212533048308 0.120038179280821 0.121086449878660 0.119579248265538 0.126271082866051 0.125472452714122 0.119977429558497 0.141289042827776 0.124594368663635 0.123362396028247 2 2|0 +|/ 12597441 12598299 12597828.556 12597136 12598440 + gene protein_coding_gene FALSE TRUE AT2G29310.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29320.1); similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29300.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.099630717268012 0.901400512397572 0.392488947919323 1 1.17726622463414 18.9325088583695 0.099630717268012 0.126645542378881
AT2G42070_at 8.73527133390575 8.90927543275466 8.87171857218345 8.68111476651756 9.26194156435435 8.88452388387043 9.39432007290322 9.06822123210244 8.5178133833739 8.13534971607716 8.63502522552905 8.79137686688185 8.53000575602074 8.79894486712214 8.66715387154348 8.84072305656366 8.59822852167184 8.37253718492855 8.48875225700663 0.145694855947724 0.145356422003404 0.137760726145427 0.141584110542251 0.139583328262672 0.141949365333823 0.138190622769125 0.146094945816212 0.14092767125698 0.143125827366399 0.135639389959213 0.135836904100385 0.144415067038407 0.134664941046072 0.148213501800072 0.138490421446412 0.153846839513321 0.140214547572804 0.143325715955143 2 2|0 -|/ 17556749 17557714 17557134 17556169 17558253 - gene protein_coding_gene FALSE TRUE AT2G42070.1 ATNUDT23 (Arabidopsis thaliana Nudix hydrolase homolog 23); hydrolase Identical to Nudix hydrolase 23, chloroplast precursor (EC 3.6.1.-) (AtNUDT23) (NUDT23) [Arabidopsis Thaliana] (GB:P93740;GB:Q8LAH1); similar to hypothetical protein Tbd_0747 [Thiobacillus denitrificans ATCC 25259] (GB:YP_314505.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.0858318227225172 0.900928616135403 0.392725821476388 1 1.17686164596924 17.4932422927916 0.0858318227225172 0.097187073440062
AT1G16210_at 9.45403233371453 9.56745888283038 9.76147250642446 9.820922536209 9.79994046822325 9.60693067695588 9.85815282219421 9.68653496899143 9.11860658698666 9.42731034037506 9.19006713843287 9.086950595148 9.35652588049334 9.46051643496817 9.20910268348514 9.2835330646269 9.23331665979836 9.29341649126908 9.15381497929014 0.108612310112576 0.118109665762974 0.111671873437348 0.111554747719719 0.106078937121107 0.106083346126677 0.108842856385920 0.113270605654398 0.115736873821373 0.105782866582724 0.109538875249651 0.109997581865703 0.101864616320221 0.112294818777175 0.109298446490107 0.106877193715371 0.108639321762241 0.114872416337092 0.101864616320221 1 1|0 -|/ 5546547 5547309 5547014.111 5546125 5547546 - gene protein_coding_gene FALSE TRUE AT1G16210.1 similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to H0211B05.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67164.1); similar to Os04g0561600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053553.1); contains InterPro domain Protein of unknown function DUF1014; (InterPro:IPR010422); contains InterPro domain High mobility group box; (InterPro:IPR009071) 0.0683532223321457 0.900356449198666 0.393013164877747 1 1.17637133129371 18.9431419431487 0.0683532223321457 0.0498881975075036
AT2G42580_at 6.07330074382959 6.1790349943157 4.78765582333818 5.42176307216897 6.89948425246589 6.50694722635525 6.33177902954742 6.04295708112122 8.00677877789835 6.71370752305412 9.22072484912567 8.34821793228028 7.882721351973 8.60066942566296 8.0722995347557 7.3727005517821 5.91143351695888 7.86354305594027 7.6127735090325 0.223071485569175 0.2185196306295 0.226414946471311 0.222118420844651 0.21822059147306 0.225569342095109 0.22345716842999 0.217353764308400 0.235252623056961 0.215683955530020 0.222224796126923 0.220717775313779 0.215957127385757 0.228112865196115 0.219551526633008 0.210425774436627 0.226285592353044 0.211303688606066 0.210425774436627 2 2|0 +|/ 17737687 17738486 17738035.8 17735793 17738796 + gene protein_coding_gene FALSE TRUE AT2G42580.1 TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); protein binding similar to TTL1 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 1), binding [Arabidopsis thaliana] (TAIR:AT1G53300.1); similar to TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4), binding [Arabidopsis thaliana] (TAIR:AT3G58620.1); similar to Os01g0218200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042410.1); similar to 4D11_10 [Brassica rapa subsp. pekinensis] (GB:AAZ67524.1); similar to Os01g0616300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043576.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.105906736013393 0.899592744011691 0.393396934632845 1 1.17571727335762 13.7070946348785 0.105906736013393 0.139604299880428
AT1G67280_at 10.4986392057344 10.3218635867179 10.6779083251456 10.5388937840802 10.9238314094201 10.4971892151427 10.8297024469167 10.6059736850227 10.4687339369130 10.8383019357019 10.6874855677302 10.5699222911552 10.7718865192493 10.6578780728154 10.6543710061426 10.9629157039388 10.6120600905658 10.7896077736031 10.6184251485735 0.089097827388552 0.09188137870901 0.0932548595755545 0.0903116800723615 0.0912332228399341 0.0967008654420909 0.0923057880520462 0.090798973712119 0.100500220934374 0.0941943399131674 0.0894976861341624 0.0900350608063804 0.091180401798133 0.0929001450712042 0.0937707190270104 0.0914982771583646 0.095698993610197 0.097017757408202 0.0935099122411825 1 1 - 25192360 25193351 25192826.636 25191942 25194357 - gene protein_coding_gene FALSE TRUE AT1G67280.1|AT1G67280.2 lactoylglutathione lyase, putative / glyoxalase I, putative similar to ATGLX1 (GLYOXALASE I HOMOLOG), lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G11840.4); similar to putative glyoxalase I [Oryza sativa (japonica cultivar-group)] (GB:BAD28547.1); similar to Os05g0230900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054977.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360)|similar to ATGLX1 (GLYOXALASE I HOMOLOG), lactoylglutathione lyase [Arabidopsis thaliana] (TAIR:AT1G11840.4); similar to putative glyoxalase I [Oryza sativa (japonica cultivar-group)] (GB:BAD28547.1); contains InterPro domain Glyoxalase/extradiol ring-cleavage dioxygenase; (InterPro:IPR011588); contains InterPro domain Glyoxalase I; (InterPro:IPR004361); contains InterPro domain Glyoxalase/bleomycin resistance protein/dioxygenase; (InterPro:IPR004360) 0.0834282450515893 0.899132491117557 0.393628346483208 1 1.17532331797672 21.2892933165456 0.0834282450515893 0.092004684604471
AT2G36900_at 7.75703398754598 7.93993271555261 7.47653192182077 7.44414462339006 8.55374463127415 7.43390037691785 7.20333513548869 7.11384128530955 7.51374644356955 7.17634399361395 7.09342924382602 6.62605298309168 7.05731043879703 7.19427387060355 6.87879710941369 7.21871944514906 6.65473332056638 6.92346372283556 7.66647895641363 0.186975365777635 0.183977492129996 0.188646220266623 0.181993172077742 0.194114257301855 0.202282901578521 0.18315054202702 0.181735976262524 0.201437769660074 0.192162249342161 0.185100886639817 0.184016021525108 0.187760357745708 0.186246378583653 0.183855198963922 0.181735976262524 0.195708067918267 0.195008885797528 0.181735976262524 2 2 - 15498726 15499543 15499129.182 15498514 15499901 - gene protein_coding_gene FALSE TRUE AT2G36900.1 MEMB11 (Golgi SNARE protein membrin 11); v-SNARE member of Membrin Gene Family Identical to Membrin 11 (AtMEMB11) (Golgi SNAP receptor complex member 2-1) (27 kDa Golgi SNARE protein) (MEMB11) [Arabidopsis Thaliana] (GB:Q9SJL6); similar to MEMB12 (Golgi SNARE protein membrin 12), v-SNARE [Arabidopsis thaliana] (TAIR:AT5G50440.1); similar to PREDICTED: similar to Gol (GB:XP_794856.2); similar to Os03g0655200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050802.1); contains InterPro domain Vesicle transport v-SNARE; (InterPro:IPR007705) -0.136398836851918 -0.898020538543392 0.394187831724498 1 1.1743722136293 14.819326741988 -0.136398836851918 0.197051532150441
AT4G31720_at 8.98679183372645 9.11155979748282 8.89178288644008 8.95340132494067 9.22880457512703 9.32406238251172 8.57009479124965 8.9844030312687 9.25036305723096 8.68335443632808 8.79571741943466 8.65868882664562 8.7744262212837 8.8790713973602 8.69536251467803 8.6132565987265 8.39603246441864 8.5308842207815 9.09343371503103 0.123038992273408 0.121735846930606 0.119190198825333 0.118877793344101 0.122561427607841 0.135538585788579 0.122966162996568 0.119904305201158 0.125868004802441 0.121499648950238 0.119473589056517 0.115317953748216 0.12207257224655 0.117152099486207 0.123838012319710 0.117042391408594 0.143543404309385 0.128104578933137 0.117838017038593 4 4|0 -|/ 15354238 15355684 15355010.5 15353958 15356358 - gene protein_coding_gene FALSE TRUE AT4G31720.1|AT4G31720.2 TAFII15 (SALT TOLERANCE DURING GERMINATION 1); transcription factor Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15) similar to TATA box-binding protein associated factor 10 [Flaveria trinervia] (GB:BAD08452.1); contains InterPro domain Transcription initiation factor TFIID, 23-30 kDa subunit; (InterPro:IPR003923); contains InterPro domain Histone-fold; (InterPro:IPR009072) -0.0774100080621416 -0.897934786706112 0.39423100195092 1 1.17429890586 17.8448527582331 -0.0774100080621416 0.0774096635824448
AT3G12950_at 6.41577460122352 5.71020222892065 5.8201801996561 5.87284197372421 5.40932397691236 5.91672991373575 4.79700798032156 4.88363871436789 4.73550887021292 4.3907333694862 4.79044376558534 4.57762483544448 4.64243536520782 4.41796917884486 4.72253123660726 4.7006963534553 4.88430011767735 4.69106896451725 5.14794113496889 0.223483383060171 0.222742148035874 0.223956149876566 0.228146701775762 0.227138591407728 0.231949832934420 0.218455736418789 0.216131105305314 0.224131453876244 0.223186896656627 0.217094764658562 0.217225255262402 0.216348175075746 0.218754286698906 0.217003094916557 0.217311698297981 0.22393637894526 0.218670648236121 0.218859454827726 3 3 - 4132805 4133472 4133051.636 4132535 4135141 - gene protein_coding_gene FALSE TRUE AT3G12950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45030.2); similar to Os08g0407200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061775.1); similar to OSIGBa0126B18.9 [Oryza sativa (indica cultivar-group)] (GB:CAH66916.1); similar to OSJNBa0008M17.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD41791.2); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) 0.111717868538414 0.897426667367729 0.394486875172533 1 1.17386464017333 10.3214348746362 0.111717868538414 0.151417520812148
AT1G48830_at 10.2832576282563 10.5546826977953 10.3440503924781 10.3782292688273 10.4321092741587 10.1556453876524 10.7650737208984 10.5922038119240 9.7950455838128 10.2972102768522 10.5278299723713 10.8447270404904 10.3686816530024 10.1773069383676 10.9614664026797 10.4085484598609 10.2693610339499 10.2490637047757 10.2161612650522 0.097539970294286 0.0969929787544604 0.0996473588376135 0.100001881689674 0.0954532565465569 0.104574509552482 0.0954532565465569 0.100052058398853 0.107973392576667 0.101499570771035 0.096490454836192 0.0954532565465569 0.0954532565465569 0.102232691490998 0.0981899420874756 0.0955272373927112 0.101133801394582 0.106474016314482 0.0959238701444033 1 0|1 /|- 18063524 18064167 18063740 18063304 18064970 - gene protein_coding_gene FALSE TRUE AT1G48830.1|AT1G48830.2 40S ribosomal protein S7 (RPS7A) Identical to 40S ribosomal protein S7-1 (RPS7A) [Arabidopsis Thaliana] (GB:Q9C514); similar to 40S ribosomal protein S7 (RPS7B) [Arabidopsis thaliana] (TAIR:AT3G02560.2); similar to 40S ribosomal protein S7-like protein [Solanum tuberosum] (GB:ABA40437.1); contains InterPro domain Ribosomal protein S7E; (InterPro:IPR000554) 0.075885779087748 0.89669482333003 0.394855618682329 1 1.17323951882865 20.7274959523786 0.075885779087748 0.0736562711999288
AT3G19840_at 5.00726321651575 5.0708338275504 5.04706529036192 5.00502760852161 5.38562513705566 5.19107680288417 5.15600088124872 4.57871802986926 4.67105318870983 5.19613629227728 4.43885109278377 4.71370178038933 4.15477439903244 4.47563557418882 4.87099638935664 4.94497183239661 4.6787000565442 4.07699725291593 4.91417752695815 0.178060481721256 0.178843608721169 0.184478055870998 0.183098729916196 0.180973071835701 0.183092454524548 0.180144768095495 0.180418925685231 0.188862506003482 0.182886267277488 0.177384472470647 0.184276267813550 0.177384472470647 0.189180487127380 0.177412221956942 0.177384472470647 0.181290381492095 0.182778950228011 0.180071417370657 3 3|0 +|/ 6896413 6897142 6896831.5 6891135 6897233 + gene protein_coding_gene FALSE TRUE AT3G19840.1 FF domain-containing protein / WW domain-containing protein similar to protein binding [Arabidopsis thaliana] (TAIR:AT1G44910.1); similar to hypothetical protein [Oryza sativa] (GB:AAL59029.1); similar to Os10g0485000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064893.1); contains InterPro domain FF; (InterPro:IPR002713); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.0893995339354854 -0.896064352782805 0.395173482844443 1 1.17270132062732 9.7909267908423 -0.0893995339354854 0.106243856957665
AT2G30110_at 9.80701634308436 10.1837931425114 10.1467157339338 10.3079530694309 9.91279156487187 10.0424409827878 10.0712077236186 10.2045545822055 9.58896261134433 9.51848370560054 9.85099503214574 9.74051219746137 9.87334242597807 9.5386587789795 9.65499249079632 9.70414538071755 9.78712938442466 9.64700206814972 9.7092717584996 0.123641047145235 0.117033937304770 0.120751149882656 0.118716645072463 0.118757636058206 0.119131111953265 0.116040763083950 0.120713604208100 0.126870087489573 0.122375066717224 0.116040763083950 0.117363468480688 0.121356600708332 0.1250549968853 0.12138772399973 0.120912403623578 0.124725008123794 0.122675000521458 0.120980295107046 2 2 - 12859728 12860158 12859925.727 12859449 12864694 - gene protein_coding_gene FALSE TRUE AT2G30110.1 ATUBA1 (Arabidopsis thaliana ubiquitin-activating enzyme 1); ubiquitin activating enzyme encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. Mutant is able to revert the contitutive defense responses phenotype of snc1, which indicates the gene is involved in defense response. It also indicates that ubiquitination plays a role in plant defense signalling. similar to ATUBA2 (Arabidopsis thaliana ubiquitin activating enzyme 2), ubiquitin activating enzyme [Arabidopsis thaliana] (TAIR:AT5G06460.1); similar to ubiquitin activating enzyme 2 [Nicotiana tabacum] (GB:BAD00984.1); similar to ubiquitin activating enzyme 1 [Nicotiana tabacum] (GB:BAD00983.1); similar to Ubiquitin activating enzyme E1 [Nicotiana tabacum] (GB:CAA71762.1); contains InterPro domain Molybdenum cofactor biosynthesis; (InterPro:IPR009036); contains InterPro domain Ubiquitin-activating enzyme repeat; (InterPro:IPR000127); contains InterPro domain UBA/THIF-type NAD/FAD binding fold; (InterPro:IPR000594); contains InterPro domain Ubiquitin-activating enzyme, E1; (InterPro:IPR000011) 0.0774284589589722 0.89603685305568 0.39518735155018 1 1.17267785262537 19.7496440986287 0.0774284589589722 0.07788394141527
AT2G18440_at 9.1179652121087 8.66560093547139 9.56311731105621 8.8133425585032 10.4374165108835 9.31027513488497 9.56016396853304 8.62364129020138 9.28136439512842 9.43338558581915 9.20996119855166 9.21396222527018 9.23282902982513 9.1394208406206 8.77348912266162 9.60667390669959 9.5153510309062 9.26261368826633 9.48110192052852 0.143117887558690 0.145994646942982 0.140561801432591 0.147943175972770 0.152022072353577 0.150802495609184 0.147869583196672 0.155964809951108 0.147867917840591 0.142022141515322 0.144790549093279 0.143846479971866 0.153324713374528 0.146508968097276 0.150680421031013 0.140843865235043 0.147478324409991 0.142092107856483 0.144208926516155 2 2 - 8003501 8003697 8003587.364 8002811 8004000 - gene protein_coding_gene FALSE TRUE AT2G18440.1 GUT15 (GENE WITH UNSTABLE TRANSCRIPT 15) Encodes a noncoding RNA, a member of an emerging class of transcripts that lack significant open reading frames and encode RNA as their final product. 0.192432678555739 0.895832523352719 0.395290410360455 1 1.17250349798300 18.5828928306264 0.192432678555739 0.295428085003089
AT3G10060_at 9.44718136077016 9.49215413857228 9.26089270584987 9.1024506568871 9.99553730942356 9.25706386498654 10.6353073197236 10.1176748432758 10.0368308440453 10.1194900060259 10.4403670341263 10.5261608588264 10.2390726650412 10.3558646856242 10.4358613487963 10.5157174941213 9.8289254224065 10.3438574075231 9.98409849880501 0.120435936609505 0.115587481711002 0.125445293965428 0.125413039936179 0.120048291750882 0.119777550837370 0.119596904870960 0.12449606245258 0.128337194657564 0.115587481711002 0.119432062975529 0.11666562725298 0.115587481711002 0.124293666195146 0.120369562715885 0.115660249915569 0.131013354713214 0.118916472504451 0.115587481711002 3 3|0 +|/ 3102509 3103551 3102896.286 3102162 3104019 + gene protein_coding_gene FALSE TRUE AT3G10060.1 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT1G20810.1); similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase-like [Oryza sativa (japonica cultivar-group)] (GB:BAC83911.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.115085683182957 -0.894197671211945 0.396115682968151 1 1.17110964342054 19.8548001820279 -0.115085683182957 0.158646190533649
AT1G18490_at 7.36366054408707 7.15853551706648 6.95952857968443 7.00879513909367 7.65000730520589 7.13297188247429 7.56141651677988 7.29411284159396 6.35229141028687 6.80236882606318 6.69299042157818 6.59671750330421 6.73886570973965 7.13599838655636 6.54300624662545 6.6094334261033 6.73584788304247 5.74559016302473 6.71234860317058 0.169343300418964 0.176118564373538 0.176605274644595 0.167208581510991 0.168724393530521 0.176496188325626 0.174938204122542 0.174723559994578 0.187760174822669 0.177566160654478 0.17492639219079 0.174823625395133 0.176280805515903 0.169351614512167 0.173252894815876 0.168384761995037 0.176514954867731 0.177486393614667 0.168973028474748 1 1|0 +|/ 6367797 6368593 6368227.5 6366978 6368842 + gene protein_coding_gene FALSE TRUE AT1G18490.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39890.1); similar to Putative Expressed protein [Brassica oleracea] (GB:AAW81740.1); contains InterPro domain Protein of unknown function DUF1637; (InterPro:IPR012864); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) -0.0895678453053492 -0.89368389446042 0.396375292003453 1 1.17067203193987 13.8771997894167 -0.0895678453053492 0.107137519539042
AT3G63140_at 11.5352217844108 11.584625086856 11.5431967543388 11.3851454089505 11.5939656739396 11.4555886372812 12.2103828386463 12.3031576726695 12.4477890519807 12.5770369722119 12.6625966286504 12.8651068365669 12.7282061881154 12.7708590714975 12.7958103394491 12.9369046389247 12.4616218579124 12.952463814563 12.4414001990139 0.0661426782456695 0.0636359522978775 0.0638502124586133 0.0647251832924643 0.0635891344970361 0.0665611263448 0.0685141952440601 0.0657297223556904 0.0680748888267165 0.0650266801974961 0.0668355003732341 0.0641131371229477 0.065608276239791 0.067508746714708 0.0655845652122017 0.0635891344970361 0.0692610205901543 0.0635891344970361 0.0652099055248987 3 3|0 -|/ 23337987 23338698 23338386.5 23337845 23339684 - gene protein_coding_gene FALSE TRUE AT3G63140.1 mRNA-binding protein, putative similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT1G09340.1); similar to mRNA-binding protein precursor [Nicotiana tabacum] (GB:AAP87140.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.0654593147301648 -0.893672145396892 0.396381230176309 1 1.17066202702228 24.3316296053177 -0.0654593147301648 0.0406499062755274
AT3G12400_at 7.63856470581378 7.69545001725977 7.7625904655253 7.7362602395806 7.80159997098577 7.95258584175126 7.11822180630247 7.65828337358169 7.96381943572583 7.65661528527745 7.8475890266211 7.5969187999549 7.64911277334352 8.07264682367313 7.21330344919148 7.79237591537242 7.58358566649132 7.53612478174164 7.71032413363407 0.133141465468347 0.130751765341474 0.13406606091659 0.133396224493645 0.130357991131053 0.130357991131053 0.141398790605080 0.140747602202026 0.135351399288768 0.136857328965908 0.134852903440932 0.132394546781515 0.134280552780376 0.139128198912721 0.143074477326817 0.131568745855058 0.151555189477685 0.130636140104154 0.133298898519372 3 3 - 3944612 3945167 3944787.455 3944303 3945858 - gene protein_coding_gene FALSE TRUE AT3G12400.1 ATELC/ELC; ubiquitin binding Mutants of this gene were initially identified because of the trichome morphogenesis phenotype. Those trichomes have multiple nuclei, a defect that turns out not to be restricted to the trichomes but also in all endoreduplicating cell types. This gene encodes a ubiquitin-binding protein with sequence similarities with yeast proteins that are components of the ESCRTI-III complexes. The Arabidopsis protein is found associated with the endosome. similar to ATELC-LIKE/ELC-LIKE [Arabidopsis thaliana] (TAIR:AT5G13860.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE89049.1); contains InterPro domain Tumour susceptibility gene 101; (InterPro:IPR008883) 0.0850833450287745 0.890974243373484 0.397746481993516 1 1.16836746687981 15.3896329389806 0.0850833450287745 0.0976483002019436
AT3G57550_at 7.65575504395056 7.19052665067351 7.87362021933522 7.59721933126171 7.17670595336048 6.55215152172256 6.87153226933398 6.75890269545647 7.86208431958664 6.43710335382826 6.90409449533026 6.97993339397037 6.10589217469631 6.76689424030325 6.94032503439698 6.37523147450026 6.06792222789606 6.49816340691649 6.62558221921709 0.188758562190533 0.188478419926363 0.191680461951832 0.200246480876183 0.185457730640707 0.192745004106275 0.182722026605679 0.192471853019840 0.181744730393395 0.185423311808611 0.184319542860120 0.187420813806560 0.19700833033249 0.184987238463659 0.191368935394464 0.184477415246111 0.186851847515956 0.190203220850805 0.191300361166696 3 3|0 +|/ 21319193 21320136 21319624.6 21317700 21320441 + gene protein_coding_gene FALSE TRUE AT3G57550.1|AT3G57550.2 AGK2 (GUANYLATE KINASE-ENCODING GENE 1) guanylate kinase similar to GK-1 (GUANYLATE KINASE 1), guanylate kinase [Arabidopsis thaliana] (TAIR:AT2G41880.1); similar to guanylate kinase [Lilium lon (GB:AAG12252.1); contains InterPro domain Guanylate kinase/L-type calcium channel region; (InterPro:IPR008145); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Guanylate kinase; (InterPro:IPR008144) -0.107185574988192 -0.890162035317257 0.398158151337742 1 1.16767779360193 13.9869168874094 -0.107185574988192 0.144330968484383
AT3G48080_at 7.94698143347222 8.62021905504668 7.56433756528123 8.02695495515722 6.11800155326996 5.55846741284074 3.09451058655199 3.1334411629809 6.3026571609931 3.04881173377788 3.08585931537644 3.80778542114655 2.66229973255404 3.83918780621764 2.77913757916089 3.67910582962028 3.51151741727234 4.75545118505603 3.8201344717571 0.327109046457086 0.315746185412872 0.318184792048084 0.31224475689645 0.305506393266735 0.310532088990912 0.296203481495726 0.299601973804125 0.29804469751901 0.288823281085298 0.288823281085298 0.288823281085298 0.302355183584509 0.292226450633553 0.305453372294327 0.288823281085298 0.290475915185048 0.288823281085298 0.29338175098568 3 3 - 17764114 17764658 17764444.364 17763923 17766175 - gene protein_coding_gene FALSE TRUE AT3G48080.1 lipase class 3 family protein / disease resistance protein-related similar to EDS1 (ENHANCED DISEASE SUSCEPTIBILITY 1), signal transducer/ triacylglycerol lipase [Arabidopsis thaliana] (TAIR:AT3G48090.1); similar to EDS1 [Lycopersicon esculentum] (GB:AAX73302.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.121330446207757 0.890075801459424 0.398201877027433 1 1.16760459965747 10.2106529612301 0.121330446207757 0.171477681438973
AT1G03680_at 11.7730306192792 11.9323946633929 11.6153027887411 11.6031952635172 11.9063548504831 11.7956032383522 11.9465425869442 12.0998254974040 11.5289919143264 11.7640794565680 11.9929891261143 12.0514136300559 11.9847562294952 11.9871351426441 12.0315019408698 12.1629153326237 11.8174472951083 11.9426338759624 11.6781973725926 0.069564043549994 0.0671454065646357 0.0693600165008671 0.0693041169020355 0.069072356690295 0.0702039341142353 0.0680889824882847 0.0695181509321683 0.0760858676564182 0.0678284104940433 0.0729740288172792 0.0671454065646357 0.0699384123687826 0.0718573040438472 0.0739919556612235 0.0671454065646357 0.0739719229428647 0.0678233519678937 0.0700201700441225 1 1 - 917022 917811 917475.545 916845 918064 - gene protein_coding_gene FALSE TRUE AT1G03680.1 ATHM1 (Arabidopsis thioredoxin M-type 1); thiol-disulfide exchange intermediate encodes a chloroplast thioredoxin similar to prokaryotic thioredoxins. Identical to Thioredoxin M-type 1, chloroplast precursor (TRX-M1) [Arabidopsis Thaliana] (GB:O48737); similar to ATHM2 (Arabidopsis thioredoxin M-type 2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT4G03520.1); similar to Thioredoxin M-type, chloroplast precursor (TRX-M) (GB:Q9XGS0); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) 0.0657125919826098 0.889910073287438 0.398285920694053 1 1.16746394843319 23.6607505149 0.0657125919826098 0.0428480904665941
AT4G16566_at 5.57363894299117 5.7611382084906 5.67427901634477 5.91884431839355 6.7552762619272 6.18521112363087 6.0141425954253 6.3903008485579 5.50861463171608 5.10775134313919 5.35966571153729 5.18763716514786 5.19504446562293 5.66346832709162 4.78401130592909 5.52702805670736 4.69100486773017 5.16203397934974 4.97011725282074 0.251580985423037 0.235629964471202 0.252992208269481 0.243317027839206 0.241893118456295 0.249238967436106 0.236862147089663 0.247458012892596 0.259613613757993 0.235629964471202 0.235629964471202 0.235935399358939 0.235629964471202 0.256662911189044 0.244328130519545 0.235928476390099 0.241166532150554 0.245739093143204 0.244370957325763 4 4|0 -|/ 9334898 9335871 9335364.714 9334644 9335990 - gene protein_coding_gene FALSE TRUE AT4G16566.1 histidine triad family protein / HIT family protein similar to Os04g0535400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053421.1); similar to H0502G05.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67111.1); contains InterPro domain Histidine triad (HIT) protein; (InterPro:IPR001310) 0.0996699284360124 0.888438276647036 0.399032850792944 1 1.16621579285273 11.2299694865276 0.0996699284360124 0.129668354315086
AT1G21660_at 7.43381692706178 7.30347509201339 6.93942128507597 6.98897990408245 7.34689673744916 7.0704047831693 8.0183452335808 8.28572164145236 7.03836248110223 7.48136686833347 7.8719627117223 8.29891356246114 7.97104218665212 8.02398433255437 7.56281111906272 7.59201823541957 7.65339926108682 7.31560616438184 7.2618236949887 0.189693311951560 0.197684316934714 0.197948689442161 0.197879175132432 0.196024820635101 0.199105657265724 0.195246387902187 0.201898259643719 0.199867741289176 0.209206484957257 0.198244994617175 0.197672520690483 0.190994280715114 0.194842198656422 0.204568561614401 0.197838552281125 0.208217050237704 0.207243942092162 0.194436633796558 1 0|1 /|+ 7607298 7608471 7607974.5 7605688 7609054 + gene protein_coding_gene FALSE TRUE AT1G21660.1 heat shock protein binding similar to heat shock protein binding [Arabidopsis thaliana] (TAIR:AT4G12770.1); similar to Os12g0548200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066970.1); similar to Os11g0661200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068408.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE79270.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0741072654450243 -0.887940858211276 0.399285514424992 1 1.16579433909253 14.9467501395569 -0.0741072654450243 0.070800932085404
AT1G73710_at 5.05567581716962 5.14944308745235 5.54657432716254 5.53250995677198 5.32802675888375 5.29709738406196 5.20288332970137 5.2956882699484 4.62626052120415 5.28852057164613 4.50855305468042 4.85979696610108 5.20489368220429 4.69921810833416 4.60755233586228 5.18473696683723 5.01207231337773 4.52507105033587 4.94077481959341 0.175307916597394 0.171928889515684 0.187389526800320 0.174503646049520 0.172999312876907 0.172321229979855 0.173810396689597 0.170640339751757 0.170471230461777 0.174461527838913 0.175493540345416 0.174078619899003 0.16807883251377 0.184747394882846 0.174296421167822 0.16807883251377 0.178093003557899 0.1719382500392 0.172832175457816 1 1 + 27727243 27727603 27727387.545 27724851 27727826 + gene protein_coding_gene FALSE TRUE AT1G73710.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G23020.1); similar to crp1-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC06967.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0617571597770945 0.887424396042847 0.399547972151557 1 1.16535695392775 10.1895317566596 0.0617571597770945 0.0235757943539197
AT2G31410_at 6.52712682605998 6.70830097136221 6.7933495116531 6.40627807345881 6.29031736441056 6.50450667059854 7.03981503473138 7.05795099112856 4.52224311682558 4.8834128661431 5.27426029969282 5.35162411961086 5.28769888869418 5.14222344356418 5.54136793731216 5.37527026583522 5.56262228912847 4.61393064402239 4.92492257665958 0.228784737794625 0.223429119927931 0.221474478324773 0.220281884856995 0.222686163305291 0.228957826381569 0.225443763949893 0.223709067460613 0.226963967225618 0.220482949922019 0.238540176726164 0.222164623729114 0.225060139304567 0.232642547190040 0.218871928986644 0.222070035526368 0.230913344151118 0.22379799571919 0.21917262923048 2 2 - 13399614 13399872 13399735.727 13399099 13399928 - gene protein_coding_gene FALSE TRUE AT2G31410.1 similar to Os02g0595400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047313.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53709.1) 0.0785398326580824 0.886890601727364 0.39981936716213 1 1.16490510888786 11.6886978083547 0.0785398326580824 0.0827871411078972
AT1G35580_at 8.34651277431329 8.29445900231035 7.50532348400447 7.85030625813776 8.05642536032422 7.57840132877211 7.41483405477422 7.0600658785822 8.37719701193061 7.87815998854982 8.10335530580457 8.26316097650144 7.71908526842514 8.0804309052572 7.8676080849131 7.58222140209673 7.41526668671838 7.77202062609429 7.7684869625523 0.152155572223733 0.145082396839906 0.161498466732551 0.151313516568803 0.148091726101061 0.169558463757772 0.148501807736762 0.148646158270519 0.148051478951437 0.145082396839906 0.148130003002514 0.149691014460435 0.151339864991861 0.152923548560674 0.148509882671219 0.149858718040817 0.155947429716724 0.146412867042652 0.151122913795826 1 1 - 13122447 13123415 13123115.636 13122182 13125242 - gene protein_coding_gene FALSE TRUE AT1G35580.1|AT1G35580.2|AT1G35580.3 CINV1 (CYTOSOLIC INVERTASE 1); beta-fructofuranosidase Encodes a protein with cytosolic (alkaline/neutral) invertase activity. The protein was shown to interact with PIP5K9. similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.1); similar to beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT4G34860.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937)|similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT4G09510.2); similar to beta-fructofuranosidase [Arabidopsis thaliana] (TAIR:AT4G34860.2); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT1G22650.1); similar to putative neutral/alkaline invertase [Lotus japonicus] (GB:CAG30577.1); similar to Plant neutral invertase [Medicago truncatula] (GB:ABE77865.1); similar to neutral/alkaline invertase [Manihot esculenta] (GB:ABA08442.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) -0.094454075193296 -0.885873794485956 0.400336702413585 1 1.16404501890188 15.6924618399793 -0.094454075193296 0.119406481962354
AT4G17420_at 7.13166499412672 6.96986580460175 6.79693692204245 6.85560311781856 7.18337750229752 6.66225112789539 6.58064671945277 6.57003203440259 6.68182391515553 6.59551022972229 6.80688442380466 6.52345403350199 6.14112176565663 6.72383042214861 6.5883558775063 6.19129760819549 6.22145323358611 6.16582029461712 6.66868991086516 0.185574305950762 0.189100302080558 0.201871992768579 0.190632253466965 0.194394039243152 0.190322608611264 0.192560166360529 0.199857328327614 0.222295922518466 0.190381089561407 0.18414501650792 0.185773789201206 0.193682319434919 0.189536315229408 0.191765999343917 0.189114201693477 0.203713172275640 0.193526495027274 0.184422965628341 4 0|4 /|- 9722567 9723427 9722983.75 9722368 9724652 - gene protein_coding_gene FALSE TRUE AT4G17420.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G47420.1); similar to hypothetical protein 31.t00054 [Brassica oleracea] (GB:ABD65092.1); contains InterPro domain Protein of unknown function DUF124; (InterPro:IPR002838) -0.0834538492515104 -0.885826414571581 0.400360820190369 1 1.16400496116979 13.3782732241421 -0.0834538492515104 0.0949920474163303
AT1G76320_at 6.99271469007189 7.4021813128051 6.76012423486999 7.24522396043866 7.23556046429714 7.34832484362889 6.77835184907286 7.15503722109759 7.27865496819205 6.82265649526778 6.58719432556442 6.75879119685808 6.85473140731127 6.93847660192242 6.91629119921524 7.18523968315375 7.0336832176048 6.88438898898657 7.37369246719266 0.178116274838269 0.174989083822434 0.188202934435770 0.177667923683382 0.190508132210534 0.191173073854558 0.184918208512553 0.184207613027780 0.188315344532771 0.179781042516639 0.181855356995512 0.18096402554352 0.178249931496134 0.178551803311554 0.174989083822434 0.174989083822434 0.184656869448086 0.181092121796834 0.178358544049782 1 1|0 +|/ 28637959 28638750 28638325.8 28636133 28639018 + gene protein_coding_gene FALSE TRUE AT1G76320.1|AT1G76320.2 FRS4 (FAR1-RELATED SEQUENCE 4); zinc ion binding similar to FAR1 (FAR-RED IMPAIRED RESPONSE 1), zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G15090.1); similar to Zinc finger, SWIM-type [Medicago truncatula] (GB:ABE82124.1); contains InterPro domain Zinc finger, PMZ-type; (InterPro:IPR006564); contains InterPro domain Zinc finger, SWIM-type; (InterPro:IPR007527); contains InterPro domain FAR1; (InterPro:IPR004330) -0.0991239792134744 -0.885503120612936 0.400525414022448 1 1.16373167643384 14.1412819325992 -0.0991239792134744 0.129223561092042
AT4G02930_at 5.86268667111297 5.81816011223438 5.96413952115453 6.16994998802037 4.68849629821732 4.545340038829 5.42867729906559 5.78286878369216 4.74426349067269 4.72583886237454 4.63605005071292 5.321605730913 4.46880070960106 4.9793922526397 5.62484497575348 4.97500762111034 4.64122027294346 4.44214415772461 4.49840802100131 0.233609958323079 0.235335965036408 0.243370924176004 0.236061185699928 0.234824656627035 0.241792271780137 0.232969207530056 0.23343968667805 0.240827957779662 0.232969207530056 0.236642179777497 0.232969207530056 0.236660838316738 0.24499628427993 0.24212574866064 0.232969207530056 0.242687140922269 0.243278641974435 0.235890828096263 4 4|0 -|/ 1295918 1296747 1296204.4 1295409 1298404 - gene protein_coding_gene FALSE TRUE AT4G02930.1 elongation factor Tu, putative / EF-Tu, putative Identical to Elongation factor Tu, mitochondrial precursor (TUFA) [Arabidopsis Thaliana] (GB:Q9ZT91;GB:Q39206); similar to AtRABE1b/AtRab8D (Arabidopsis Rab GTPase homolog E1b), translation elongation factor [Arabidopsis thaliana] (TAIR:AT4G20360.1); similar to translational elongation factor EF-TuM [Zea mays] (GB:AAG32661.1); similar to Os03g0851100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051912.1); contains InterPro domain Translation elongation factor Tu; (InterPro:IPR004541); contains InterPro domain Elongation factor Tu, C-terminal; (InterPro:IPR004160); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Translation elongation factor, GTP-binding; (InterPro:IPR013004); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.0755768291144995 -0.885034989854137 0.40076383194312 1 1.1633361037861 10.3036915120946 -0.0755768291144995 0.075489508077955
ATCG00690_at 9.32388599601442 10.4747027829585 9.8835086181021 10.4327591354043 9.80282150334194 9.7597471723313 10.0914300954004 10.4812671834801 10.7606883733658 10.7598676015176 11.4341405762094 11.5306872589597 11.0994914112815 11.0944655223907 10.7868752633845 11.4023237730515 10.6655802640354 11.1443547337994 10.6252109469403 0.149508969701490 0.126633875748806 0.137532636394331 0.128353616685169 0.126374932345517 0.131487327963566 0.130435385664402 0.126374932345517 0.132134627777549 0.134477221311361 0.128089535738207 0.126374932345517 0.126374932345517 0.131887323878906 0.130678186835033 0.126374932345517 0.135148959753215 0.131100073208860 0.128944479381171 C C + 74085 74110 74097 74082 74183 + gene protein_coding_gene FALSE TRUE ATCG00690.1 Encodes photosystem II 5 kD protein subunit PSII-T. This is a plastid-encoded gene (PsbTc) which also has a nuclear-encoded paralog (PsbTn). Identical to Photosystem II reaction center protein T (PSII-T) (psbT) [Arabidopsis Thaliana] (GB:P61839;GB:P37259); similar to Photosystem II reaction center protein T (PSII-T) (GB:Q6EYH9); contains InterPro domain Photosystem II protein PsbT; (InterPro:IPR001743) 0.153185901306338 0.884960707319765 0.400801673164346 1 1.16327335042945 20.9612630563776 0.153185901306338 0.230876180135332
AT4G17620_at 8.1232385976214 8.603605979201 8.58129549970005 8.55176703658402 8.3006314759625 8.2160636096004 8.1436024141869 8.19063208668929 7.95331591465429 8.17034583942223 7.81841053460581 8.22631366786401 8.22276220678213 7.86744717685727 7.38982847781095 8.11523312330764 7.47367503739436 7.35045080487868 8.21717620120042 0.165058516886400 0.162770868312195 0.167181217461931 0.159796546140427 0.161800372690614 0.174287127788246 0.160729118759412 0.163098197587030 0.189382475002408 0.165974542366933 0.162241963075979 0.164202692309813 0.166842862582053 0.169679726443823 0.167586550931867 0.164033250195733 0.179824602352512 0.174522490041958 0.160666726593399 4 4 + 9823924 9824832 9824517.2 9821927 9825019 + gene protein_coding_gene FALSE TRUE AT4G17620.1|AT4G17620.2 glycine-rich protein Identical to Protein Dom3z homolog, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8RY73;GB:O23603); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30460.1); similar to glycine-rich protein -related [Brassica oleracea] (GB:ABD65180.1); contains domain Uteroglobin-like (SSF48201); contains domain DOM-3 RELATED (PTHR12395)|Identical to Protein Dom3z homolog, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8RY73;GB:O23603); similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT4G30460.1); similar to glycine-rich protein -related [Brassica oleracea] (GB:ABD65180.1); contains domain DOM-3 RELATED (PTHR12395) -0.079213943517139 -0.884793631215592 0.400886794856097 1 1.16313222146773 16.2996684776665 -0.079213943517139 0.0849534960665369
AT2G20890_at 11.2287731913501 11.4005180106100 11.1061365436240 10.9703096965282 11.5568098360972 11.1684640633944 11.7545875184271 11.8714115172138 11.9615693249668 11.8473734321777 12.2000556178516 12.3646883556275 11.7941981763587 12.0865433392667 12.2056026715173 12.1050143833270 11.5685981346531 12.0564522882574 11.7060731522720 0.0905235590499294 0.086984402824346 0.0837832860706554 0.0862662330208464 0.086801539508871 0.0872429291045356 0.0877740228451522 0.0876754895438203 0.087216554150689 0.083305375195633 0.083305375195633 0.0837454333130095 0.0886177974905662 0.0912730343594955 0.087809269716304 0.083305375195633 0.0985542107478857 0.084133426850413 0.083305375195633 2 2|0 +|/ 8995290 8996223 8995688.3 8994747 8996494 + gene protein_coding_gene FALSE TRUE AT2G20890.1 PSB29 (THYLAKOID FORMATION1) Chloroplast-localized Thylakoid formation1 gene product involved in vesicle-mediated formation of thylakoid membranes. Thf1 antisense lines contain abnormal chloroplasts early in leaf development (chloroplasts have loosely stacked thylakoid membranes). Expression was induced in the light and decreased under dark conditions. G-alpha interaction partner that functions downstream of the plasma membrane?delimited heterotrimeric G-protein (GPA1) in a D-glucose signaling pathway. Localized to both the outer plastid membrane and the stroma. Probably involved in the metabolic pathway that controls the assembly of the PS II complex. Identical to Protein THYLAKOID FORMATION1, chloroplast precursor (THF1) [Arabidopsis Thaliana] (GB:Q9SKT0;GB:Q8LB69); similar to Protein THYLAKOID FORMATION1, chloroplast precursor (GB:Q7XAB8) -0.0770435200519874 -0.8833060118302 0.401645272997273 1 1.16187659270333 23.3251176758204 -0.0770435200519874 0.0797565185397096
AT1G55530_at 8.18770475227296 8.6445954318551 8.32484439878446 8.33247771301342 8.39460357509254 8.22221156723908 8.27072734434316 8.61124534110742 8.33384762189478 8.60275550326632 8.49099553701417 8.49461465949827 8.51265681175236 8.48913171227522 8.07965043435603 8.50210925996196 8.27134103980608 8.35574930914276 8.451842750674 0.157108175368647 0.149408430614213 0.153635298717773 0.155273119611609 0.145647906857442 0.163557501128285 0.146873793951456 0.144741694995099 0.160232071338562 0.146404617581175 0.146440032317143 0.146398898458955 0.151276971909298 0.151065926452762 0.154070310122036 0.144977908879151 0.161555242214886 0.152237759822475 0.157958315893686 1 1 - 20733143 20733713 20733427.455 20732848 20734949 - gene protein_coding_gene FALSE TRUE AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G56340.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0866590501657307 -0.882902056138575 0.40185141029192 1 1.16153593147281 16.8047244591740 -0.0866590501657307 0.103033507611921
AT3G17750_at 7.17696483760049 7.28709086780432 7.14847074434692 6.98699900433562 7.85058265004102 7.37637673773442 7.97269149163085 7.39445703550354 7.20906027275052 7.10366810808181 7.3982528620916 7.27073821232859 7.31371355367872 7.03415755438523 7.01083784366991 7.59635260431094 7.28622391433875 6.98711762696137 7.65316809084086 0.16833564841346 0.172435906235819 0.173305705165149 0.172876603646896 0.169612694827265 0.174040941174475 0.175160069081655 0.172862544451029 0.180549623051310 0.178553516918242 0.178600765333312 0.172823763282466 0.170241080966257 0.177956037713096 0.1836882758252 0.17162225544995 0.185501587223178 0.177873976811740 0.171688369041839 3 3|0 +|/ 6077614 6078399 6078014.5 6073775 6078728 + gene protein_coding_gene FALSE TRUE AT3G17750.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G73460.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G73450.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT77851.1); similar to Os03g0719500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051095.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.100992496553694 -0.882412998567809 0.402101075568023 1 1.16112367342261 14.6787740521388 -0.100992496553694 0.133759859323199
AT1G75350_at 11.5082982729136 11.6847143149765 11.2885916845930 11.3019208615979 11.839441906032 11.3638875128652 11.9190659204991 11.9825580500854 11.6880971257890 12.0401471058693 12.2262375663672 12.2231943343688 11.9407548956527 11.9189293014200 12.4407899222691 12.1364661656288 11.7179561972215 11.9462534157700 11.9851676765247 0.0778854432454668 0.0750614467734803 0.0772183788427818 0.0752221152260296 0.0760594100586958 0.0766387451600551 0.075784112759388 0.075273920423659 0.0816969857838356 0.0750614467734803 0.0758941968105522 0.076454333079413 0.0774610810768473 0.0765112992387907 0.0750614467734803 0.0751719321538488 0.0821264331875676 0.0775199596489739 0.0750614467734803 1 1|0 +|/ 28275837 28276249 28276059.7 28275732 28276493 + gene protein_coding_gene FALSE TRUE AT1G75350.1 EMB2184 (EMBRYO DEFECTIVE 2184); structural constituent of ribosome Identical to 50S ribosomal protein L31, chloroplast precursor (CL31) (RPL31) [Arabidopsis Thaliana] (GB:Q9FWS4); similar to similar to chloroplast 50S ribosomal protein L31 [Medicago sativa] (GB:AAC77927.1); contains InterPro domain Ribosomal protein L31; (InterPro:IPR002150) -0.0804232797851792 -0.88235640783345 0.402129972422685 1 1.16107598153031 23.5977064958945 -0.0804232797851792 0.088492296918147
AT3G22480_at 7.11750202841374 7.0506529655239 6.66072079709201 6.83760870732822 6.59677241141227 6.87374465809929 6.20469267020415 6.76729337850842 6.42047169040673 6.07788903112726 6.30441718382013 6.07364576350316 6.1375063809995 6.03646854004135 6.31368321945402 6.23122108816135 5.97226831157017 5.90613194387848 6.28531335420342 0.178028855924883 0.176548246517866 0.178244792652301 0.185679982773397 0.174628836589884 0.184872399951506 0.184973089095872 0.179770012074431 0.195308122317655 0.174968073168331 0.181436979713934 0.178934722695751 0.181601979267846 0.175166984820869 0.184170826672747 0.174256852447757 0.185222328095666 0.186471534468516 0.175234472444038 3 3 + 7969094 7969509 7969260.636 7968085 7969712 + gene protein_coding_gene FALSE TRUE AT3G22480.1|AT3G22480.2 prefoldin-related KE2 family protein Identical to Probable prefoldin subunit 2 [Arabidopsis Thaliana] (GB:Q9LJ98); similar to Os11g0568500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068114.1); similar to hypothetical protein DDBDRAFT_0189393 [Dictyostelium discoideum AX4] (GB:XP_647151.1); similar to Os12g0485800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066784.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) -0.0910652525817777 -0.88049991723756 0.403078769262466 1 1.15951281186972 12.9551946999932 -0.0910652525817777 0.113346354484683
AT4G09150_at 8.3958809422921 8.74303402750486 8.22234809238414 8.31425660376245 9.03942309853456 8.70122948381666 8.39034885612278 8.37561198260115 8.40528618678045 8.53956275971715 8.69582314745082 8.92134756658647 8.43404546004033 8.74910207290905 8.2879407038031 8.89710689525149 7.89744742976727 8.06363360506422 8.34081288594206 0.147309936657102 0.143095103221292 0.149840123140799 0.150314271021395 0.149982212720534 0.154386661312664 0.149729677744571 0.153907593275064 0.167647023566346 0.151413379125486 0.145634181991474 0.143318153776484 0.153021139905431 0.153954507064415 0.152562421465955 0.147053476305095 0.165205726009126 0.153148049918386 0.145792157248354 4 4|0 +|/ 5832890 5833416 5833209.2 5828622 5833657 + gene protein_coding_gene FALSE TRUE AT4G09150.1 T-complex protein 11 similar to T-complex protein 11 [Arabidopsis thaliana] (TAIR:AT1G22930.1); similar to OJ000114_01.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE03125.3); similar to Os02g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047132.1); similar to H0525C06.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66841.1); contains InterPro domain T-complex 11; (InterPro:IPR008862); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081) 0.078923641728386 0.87954518846486 0.403567321797386 1 1.1587099785692 16.9836965380052 0.078923641728386 0.085404630631787
AT4G13780_at 8.52353727201376 8.50919467115635 8.42759569019004 8.47343234371608 8.87041567599134 8.47148035851747 8.19122610478846 8.07298197412154 8.26657114434167 8.26683276992774 8.20316976742368 8.33371844559504 8.00578668470716 8.30437851314873 8.00421180157406 8.30901431273037 7.95798964544737 8.12070421985086 8.19666865080027 0.139021311423618 0.138925584146134 0.131521192449826 0.136645152122350 0.136340935578534 0.140196448865248 0.134330699842477 0.13226508731873 0.137476015094611 0.137652911442014 0.130902883035797 0.131666490566970 0.139166375793561 0.136699994297370 0.137879384369196 0.145584068934791 0.141845067417106 0.137124967939186 0.135339541559003 4 4 - 7993363 7994039 7993604.091 7993151 7998511 - gene protein_coding_gene FALSE TRUE AT4G13780.1 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative Identical to Probable methionyl-tRNA synthetase (EC 6.1.1.10) (Methionine--tRNA ligase) (MetRS) [Arabidopsis Thaliana] (GB:Q9SVN5); similar to tRNA-binding region domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G40660.1); similar to methionyl-tRNA synthetase [Oryza sativa] (GB:AAC99620.1); similar to Aminoacyl-tRNA synthetase, class Ia; Nucleic acid-binding, OB-fold, subgroup [Medicago truncatula] (GB:ABE91897.1); similar to Probable methionyl-tRNA synthetase (Methionine--tRNA ligase) (MetRS) (GB:Q9ZTS1); contains InterPro domain Methionyl-tRNA synthetase, dimer-forming; (InterPro:IPR008224); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain t-RNA-binding region; (InterPro:IPR002547); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Methionyl-tRNA synthetase, class Ia; (InterPro:IPR002304) 0.0740050818517366 0.879493655111038 0.40359370433952 1 1.15866666438360 16.6415976090617 0.0740050818517366 0.072484451748113
AT1G01100_at 11.1376107277055 11.1971414632413 11.0657161424620 11.0598603467591 11.1754064656773 11.0079278581285 11.2150529352605 11.4668607878704 11.2866613077803 11.331852350394 11.4657921463306 11.6394037180390 11.2339391976877 11.2684503906016 11.7552726231967 11.0955861441755 11.1995460262798 11.0267649174942 11.2637896280017 0.070600697761888 0.0685280251857423 0.073081078169498 0.0719051850848377 0.0704080258871127 0.068479856634126 0.0725362060453345 0.0687674155430604 0.0741364596271328 0.0677434388450214 0.0709416237485818 0.0677434388450214 0.0702375706567865 0.0758726754681515 0.0739290398987988 0.0687232447183455 0.0677434388450214 0.0709694771870937 0.0683838780722242 1 1 - 50293 50930 50672.182 50075 51197 - gene protein_coding_gene FALSE TRUE AT1G01100.1|AT1G01100.2|AT1G01100.3|AT1G01100.4 60S acidic ribosomal protein P1 (RPP1A) Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); Identical to 60S acidic ribosomal protein P1-3 (RPP1C) [Arabidopsis Thaliana] (GB:Q8LEQ0;GB:Q9FIK9); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein P2; (InterPro:IPR001859); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813)|Identical to 60S acidic ribosomal protein P1-1 (RPP1A) [Arabidopsis Thaliana] (GB:Q8LCW9;GB:Q9MAM5); Identical to 60S acidic ribosomal protein P1-3 (RPP1C) [Arabidopsis Thaliana] (GB:Q8LEQ0;GB:Q9FIK9); similar to 60S acidic ribosomal protein P1 (RPP1C) [Arabidopsis thaliana] (TAIR:AT5G47700.2); similar to acidic ribosomal protein P1a-like [Solanum tuberosum] (GB:ABB29934.1); contains InterPro domain Ribosomal protein 60S; (InterPro:IPR001813) -0.0677227375895049 -0.879169786749456 0.403759537056652 1 1.15839449814025 22.4805448363219 -0.0677227375895049 0.0533487076770548
AT2G15560_at 5.62918213016912 6.05510748413931 5.37649164235276 6.0983804311928 6.72231367917971 5.39631039300883 5.87040911678738 6.0084238149207 4.67603193413712 4.07926055599419 4.95253921193089 5.17456326956455 5.07554892800905 4.04312540599444 5.11945274358477 4.99506795206615 4.02036491702232 4.97161989882133 4.59606138124269 0.484102825296346 0.491698959167042 0.45778636448247 0.45778636448247 0.45778636448247 0.504332428873276 0.45778636448247 0.45778636448247 0.487607573879219 0.494272513502517 0.485589977540183 0.45778636448247 0.475817155876824 0.45778636448247 0.45778636448247 0.45778636448247 0.476637096748133 0.471908489430886 0.490998003843249 2 2 - 6795635 6795758 6795714 6794951 6797183 - gene protein_coding_gene FALSE TRUE AT2G15560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G62200.1); similar to EDA32 (embryo sac development arrest 32) [Arabidopsis thaliana] (TAIR:AT3G62210.1); similar to Os07g0637200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060400.1); similar to Protein of unknown function DUF537 [Medicago truncatula] (GB:ABE81607.1); similar to Os08g0230500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061299.1); contains InterPro domain Protein of unknown function DUF537; (InterPro:IPR007491) 0.175588700172793 0.878530014843405 0.40408726642834 1 1.15785710059531 10.5168206271349 0.175588700172793 0.272519537373538
AT2G32290_at 5.31463480466541 5.81055140644177 6.49180239454456 6.68698471905218 6.09563586675912 5.2118205047934 9.11851358145539 8.62392841620918 4.95575423149977 6.47826122285507 5.62327298572596 5.27308351126487 6.8183423151425 7.07089202800469 5.00298656317488 8.43802124779307 8.20834461865478 5.90420088668853 5.71035691683026 0.231421576781835 0.241892489221981 0.236242411805807 0.238383442559815 0.230563802655289 0.2482394920057 0.234519843574015 0.233716721829795 0.247262183529197 0.232706127310868 0.234917083883939 0.230563802655289 0.238631590726478 0.238344232713718 0.239266344029968 0.231018732762020 0.240491062683716 0.245845313288516 0.240195501884644 2 2 - 13721743 13722469 13722036.818 13721624 13724006 - gene protein_coding_gene FALSE TRUE AT2G32290.1 BMY5 (beta-amylase 5); beta-amylase similar to ATBETA-AMY (BETA-AMYLASE), beta-amylase [Arabidopsis thaliana] (TAIR:AT4G15210.1); similar to beta-amylase [Glycine max] (GB:AAY40266.1); similar to Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Re (GB:1UKO); similar to beta-amylase [Castanea crenata] (GB:AAK30294.1); contains InterPro domain Glycoside hydrolase, family 14B, plant; (InterPro:IPR001371); contains InterPro domain Glycoside hydrolase, family 14; (InterPro:IPR001554) -0.133871975872245 -0.87780655760665 0.404458091931241 1 1.15724979546309 12.7978258667157 -0.133871975872245 0.198052991630574
AT4G14760_at 7.1896310339372 7.51199233847148 7.43161060628947 7.55895490867094 7.59287117704287 7.7959914400073 8.07003041948903 8.24193494206621 8.23856041146961 8.62505024160925 8.98920367401721 8.57275792727757 8.51415621582303 8.59413054328957 8.33577543238826 8.35015902291379 8.05090717389378 8.60026605019127 8.61296099158066 0.116311336918987 0.116975476725337 0.119620180779312 0.111943150012073 0.111964649775844 0.118056320856124 0.112522729737637 0.111883087087181 0.114422637721643 0.114732269295191 0.114377400849839 0.112729815552450 0.111417826315363 0.119821202233801 0.115537713952389 0.111417826315363 0.121171820638519 0.111417826315363 0.112545651840437 4 4 + 8480509 8481055 8480774 8475964 8481089 + gene protein_coding_gene FALSE TRUE AT4G14760.1 M protein repeat-containing protein similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT3G22790.1); similar to kinase interacting family protein [Arabidopsis thaliana] (TAIR:AT1G03080.1); similar to Prefoldin [Medicago truncatula] (GB:ABE82954.1); similar to Prefoldin; tRNA-binding arm; t-snare; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE80288.1); contains InterPro domain KIP1-like; (InterPro:IPR011684) -0.074905596866931 -0.876611985009208 0.405070927530229 1 1.15624791204202 16.1706821348439 -0.074905596866931 0.0756196186682449
AT2G35060_at 9.27062573808498 9.4474759800643 9.62214338265788 9.66797531320807 9.8810884788988 9.71185903810415 9.4424160451648 9.4930356387339 9.49603307180907 9.38362370053823 9.39532939846548 8.89603526820727 9.44015681577551 9.30148143635639 8.5225582440897 8.82382177698104 9.28539939691783 9.0609036397459 8.9245828656213 0.122426867601968 0.11833249561488 0.121576362187057 0.119471147956835 0.119454117392698 0.122971765074337 0.121758952258752 0.124191446321145 0.130266595685811 0.124880412278208 0.125121005173420 0.122459386638278 0.125246152099940 0.123273541258728 0.122988561024326 0.125257553801380 0.119982406540350 0.119731291362508 0.11840764119121 2 2|0 -|/ 14782429 14782911 14782653.4 14782142 14785949 - gene protein_coding_gene FALSE TRUE AT2G35060.1|AT2G35060.2 KUP11 (K+ uptake permease 11); potassium ion transporter potassium transporter Identical to Potassium transporter 11 (AtPOT11) (POT11) [Arabidopsis Thaliana] (GB:O64769); similar to potassium ion transporter [Arabidopsis thaliana] (TAIR:AT4G19960.1); similar to KUP10 (K+ transporter 10), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G31120.1); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to Putative potassium transporter 12 (OsHAK12) (GB:Q8VXB1); similar to putative potasium transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD21001.1); similar to Putative potassium transporter 9 (AtPOT9) (GB:O49423); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.0650045352248791 0.87657764446614 0.405088554534097 1 1.15621912732355 18.7464727650597 0.0650045352248791 0.0439768372257802
AT1G69680_at 4.69673647784676 4.9086666621566 5.39816889537345 5.37911358012776 4.86845009968651 4.9178268367979 5.78609245633784 5.67868786368703 4.27698049232791 4.82117876762276 4.59636639591169 4.34915193617042 4.79423942007589 4.0809375507048 4.60787798038822 4.89451559213403 5.04267490908388 4.70391770670525 4.81003222879689 0.213551888530162 0.211868283047475 0.215201775159658 0.217261422735914 0.211171548315790 0.224989144914253 0.217072442646183 0.217253409640354 0.222298598545274 0.213185271927639 0.213387559398823 0.216440212817914 0.2145874658423 0.214233827313967 0.211171548315790 0.211171548315790 0.222675125535749 0.219165085133329 0.215556553110304 1 1 + 26208825 26210202 26209522.818 26208468 26210591 + gene protein_coding_gene FALSE TRUE AT1G69680.1 similar to mog1 protein [Xenopus laevis] (GB:CAC35704.1); similar to Os04g0459600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052985.1); contains InterPro domain Ran-interacting Mog1 protein; (InterPro:IPR007681) -0.0645048275981965 -0.875909788753534 0.405431473102812 1 1.15565950554821 9.83910486699137 -0.0645048275981965 0.0421242625626637
AT3G63170_at 6.39985608617231 6.60424764873999 5.35531850205892 5.55798991110303 6.43324518008084 5.72855606423025 6.48217327723947 6.364825858066 4.46825891633969 5.94073439751787 6.21120290070189 6.49934964233557 5.62524747056725 5.7540522394534 7.30963537733857 5.82641060037085 6.18353935525261 6.2271362780718 5.52295738374358 0.249686420332685 0.256564130103862 0.266295156666504 0.256786259362857 0.252357714286383 0.259038929928322 0.249942150552746 0.264080220855706 0.267906699610746 0.255604643069254 0.255743160317817 0.248823373026645 0.256235364106419 0.275353490245928 0.254920239884556 0.247685202132811 0.262960413056222 0.247685202132811 0.250346500538565 3 3|0 +|/ 23345904 23346678 23346231 23345327 23347084 + gene protein_coding_gene FALSE TRUE AT3G63170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G26310.1); similar to putative chalcone isomerase [Lycopersicon esculentum] (GB:AAQ55182.1); similar to Os07g0571600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060052.1) 0.0999615986457982 0.875418354735936 0.405683937231671 1 1.15524793798127 11.8733875487340 0.0999615986457982 0.133286784940700
AT2G40930_at 6.1555835307953 6.74616232195614 6.47169729876397 6.31560425857454 7.2109901257968 6.45914972664551 6.05795944894184 6.26934550303879 5.41817551235023 5.9327024882209 5.58158868731267 5.72792170715167 6.49816062131512 5.60126130055193 5.32540698093484 6.45805501537057 5.25947451704631 5.41050630933676 6.05278466932531 0.256728293212403 0.248397778370580 0.2531384080699 0.243019857546386 0.246042054447374 0.241658619697003 0.250928632204719 0.241658619697003 0.259877237522553 0.250510386707762 0.248018563740202 0.250936138197958 0.241658619697003 0.250551206993158 0.254683566570537 0.247151502084899 0.251145316594412 0.246560282806996 0.243411208552238 2 2|0 -|/ 17083826 17084602 17084238 17083406 17089511 - gene protein_coding_gene FALSE TRUE AT2G40930.1 UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5); ubiquitin-specific protease Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation. Identical to Ubiquitin carboxyl-terminal hydrolase 5 (EC 3.1.2.15) (Ubiquitin thioesterase 5) (Ubiquitin-specific-processing protease 5) (Deubiquitinating enzyme 5) (AtUBP5) (UBP5) [Arabidopsis Thaliana] (GB:O22207;GB:Q9SEX3); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G32850.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10570.1); similar to ubiquitin carboxyl-terminal hydrolase family protein [Arabidopsis thaliana] (TAIR:AT4G10590.1); similar to Os12g0621000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067298.1); similar to Os10g0160000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064204.1); similar to PREDICTED: similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 [Canis familiaris] (GB:XP_860508.1); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 1; (InterPro:IPR006615); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394); contains InterPro domain Ubiquitin carboxyl-terminal hydrolase, N-terminal region 2; (InterPro:IPR010460) 0.119336826837100 0.87503484151561 0.405881036663065 1 1.1549268840575 12.2278204179856 0.119336826837100 0.171585806305636
AT4G10710_at 7.42636369806119 7.5986883322177 7.76132441912868 7.7557583921404 7.22680916416395 7.85589397602751 7.07488037487685 7.47526573412349 7.2696209970458 7.70623898798185 7.32545547871858 7.5050518186894 7.40845355524154 7.25391287471148 6.93865964981537 7.66887490475958 7.6680148853515 7.14434477545056 7.28794636704806 0.124077960175521 0.123681147578860 0.127273204542736 0.126404998901664 0.124997658895449 0.130589689822801 0.132140938530315 0.131701765010509 0.139620800402049 0.127100459904782 0.125760798300642 0.125213460657714 0.134965636737452 0.130256938262660 0.136465159279738 0.12543188770982 0.129837137907225 0.135476650489134 0.138819928638402 4 4 - 6602276 6602785 6602562.727 6601985 6606350 - gene protein_coding_gene FALSE TRUE AT4G10710.1 SPT16 (GLOBAL TRANSCRIPTION FACTOR C); metalloexopeptidase encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SPT16. Identical to FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (SPT16) [Arabidopsis Thaliana] (GB:O82491); similar to GTC2 (GLOBAL TRANSCRIPTION FACTOR GROUP C2) [Arabidopsis thaliana] (TAIR:AT4G10670.1); similar to Peptidase M24 [Medicago truncatula] (GB:ABE78552.1); similar to FACT complex subunit SPT16 (Facilitates chromatin transcription complex subunit SPT16) (Global transcription factor group C protein 102) (GB:Q8H6B1); similar to Global transcriptional regulator, cell division control protein (ISS) [Ostreococcus tauri] (GB:CAL57298.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994) 0.099487080931174 0.874822937534181 0.40598996984312 1 1.15474954052207 14.9145553997762 0.099487080931174 0.132449905143179
AT3G22104_at 7.84555723557974 8.11257996420204 7.44490919207149 7.99518340326932 8.91920705096515 8.27438812957024 9.13575401970601 9.24019564748677 6.26885412576889 7.60892035125595 7.68410409551416 7.42545942618267 8.19628279651934 7.88431718429648 7.4791095614428 7.32055660335497 7.41122423005166 7.2691525397554 6.93479015686508 0.198696272218103 0.201225281516540 0.207917314310775 0.206125502691315 0.204503977162270 0.207749390485705 0.200040943532777 0.202398288259135 0.237221298372223 0.201657140224582 0.206423209443408 0.203684370922212 0.202541545254649 0.21320685540875 0.205385872930407 0.202133224878962 0.223877484724363 0.211782202252964 0.208574865531736 3 3 + 7790906 7791374 7791139.545 7789442 7792387 + gene protein_coding_gene FALSE TRUE AT3G22104.1 phototropic-responsive NPH3 protein-related similar to phototropic-responsive NPH3 family protein [Arabidopsis thaliana] (TAIR:AT3G19850.1); similar to Os04g0674300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054238.1); similar to H0403D02.14 [Oryza sativa (indica cultivar-group)] (GB:CAH68185.1); contains InterPro domain NPH3; (InterPro:IPR004249); contains InterPro domain BTB; (InterPro:IPR000210) 0.110577243617560 0.874204592273341 0.406307960121907 1 1.15423224597093 15.6316205049912 0.110577243617560 0.154862396172106
AT2G01980_at 6.6095891784337 6.92190717610437 6.86457642547772 6.7187946923881 6.76553266453952 6.56740356166261 6.59111461071221 6.75463456221418 6.62345941885589 6.41733238279895 6.2680916774546 6.46450883417713 6.19511285345172 6.38797252035946 6.19735605715582 6.37724234094936 6.67691327435485 6.39754803467891 6.54540932819886 0.189235864176351 0.185210261930873 0.191831338170075 0.196338005673541 0.194260907783625 0.201689812845612 0.189948299997671 0.190046379731232 0.198461445576567 0.201621513646397 0.189366203130656 0.193913377751253 0.190426394627551 0.192858790365309 0.192870864252097 0.193250379920107 0.198372335686141 0.185210261930873 0.191488302162403 2 2 + 462452 463005 462743.727 457009 463325 + gene protein_coding_gene FALSE TRUE AT2G01980.1 SOS1 (SALT OVERLY SENSITIVE 1); sodium:hydrogen antiporter Encodes a plasma membrane-localized Na+/H+ antiporter SOS1. Functions in the extrusion of toxic Na+ from cells and is essential for plant salt tolerance. Has 12 predicted transmembrane domains in the N-terminal region and a long cytoplasmic tail of approx. 700 aa at the C-terminal side. SOS1 interacts through its predicted cytoplasmic tail with RCD1, a regulator of oxidative-stress responses, suggesting that SOS1 might function in oxidative-stress tolerance. Identical to Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7) (NHE-7) (Protein SALT OVERLY SENSITIVE 1) (NHX7) [Arabidopsis Thaliana] (GB:Q9LKW9;GB:Q9ZPS6); similar to ATNHX8 (Arabidopsis thaliana Na+/H+ exchanger 8), sodium:hydrogen antiporter [Arabidopsis thaliana] (TAIR:AT1G14660.1); similar to putative plasmalemma Na+/H+ antiporter [Solanum lycopersicum] (GB:CAG30524.1); similar to Na+/H+ antiporter [Populus euphratica] (GB:ABF60872.1); similar to putative Na+/H+ antiporter [Suaeda japonica] (GB:BAE95196.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) -0.0741875283638156 -0.873473943870535 0.406683930741937 1 1.15362138853578 13.1738575634535 -0.0741875283638156 0.0743911179165723
AT2G27050_at 9.79702275948256 9.70378429039448 9.23326618732803 9.30505735759353 10.1310615514078 9.91476129888917 9.67595534804112 9.62603560582058 10.4128822840835 10.2265857429216 10.5656961934489 10.4644564852958 10.2615183760621 10.1851978075505 10.2727079639871 10.2717588834487 9.98026507655857 10.2123550168775 10.4145406500182 0.0761606936897394 0.072711103118062 0.075598230795692 0.0735450908991209 0.0731668516147444 0.0814582592544579 0.0752945080278134 0.0741905965586256 0.0759725286400876 0.0721748923763828 0.0732600964137006 0.0721748923763828 0.0763277684093322 0.076318442051868 0.0743891567127667 0.0732841495707587 0.0769867383623018 0.0745251893682315 0.0721748923763828 2 2 + 11554584 11555021 11554793.909 11552831 11555371 + gene protein_coding_gene FALSE TRUE AT2G27050.1 EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor ethylene-insensitive3-like1 (EIL1) Identical to ETHYLENE-INSENSITIVE3-like 1 protein (EIL1) [Arabidopsis Thaliana] (GB:Q9SLH0;GB:O23114); similar to EIN3 (ETHYLENE-INSENSITIVE3), transcription factor [Arabidopsis thaliana] (TAIR:AT3G20770.1); similar to EIN3-like protein [Cucumis melo] (GB:BAB64344.1); similar to Ethylene insensitive 3 [Medicago truncatula] (GB:ABE82621.1); similar to transcription factor EIL1 [Vigna radiata] (GB:AAL76272.1) -0.0646273262004158 -0.873136972585393 0.406857409426562 1 1.15333980573510 19.9874084004087 -0.0646273262004158 0.0434795027053329
AT4G38980_at 4.95860956011018 4.83028566542145 5.03926420116205 4.76338103631495 4.71510048773267 5.32908738840935 5.12196865505432 4.7943714845839 5.15292912766822 5.13817351814958 4.8656189261265 4.95359575465676 5.037308002202 4.96976380837579 4.6868899520367 5.10315093065884 5.00979395685891 4.29125876819537 5.00189299663078 0.192255684335684 0.194336809304825 0.195436779934611 0.195153268596747 0.196392276268305 0.213933716381577 0.194582843195456 0.200109861022893 0.203123023805285 0.195533989113855 0.206132864606558 0.191832632981539 0.191832632981539 0.191832632981539 0.194644134932017 0.199516975745843 0.196894359717885 0.195911599058936 0.193714990972939 4 4 - 18166906 18167447 18167160.091 18166703 18168186 - gene protein_coding_gene FALSE TRUE AT4G38980.1 unknown protein -0.098796632324187 -0.87304876553325 0.406902828601843 1 1.15326611216616 9.9251774231178 -0.098796632324187 0.131439359169313
AT3G09180_at 6.06521768339866 7.04803415820875 6.31031006086177 6.25733181818378 6.94374108528988 7.06378000202311 5.79606249182959 6.3313451839055 5.58863812674887 5.00343998608908 5.13234753726749 5.40677222417555 5.02589132094933 5.55359081911214 4.95758332342065 5.78894023535238 4.92638971328659 5.35626661809042 5.42642783819253 0.229547633379883 0.227166988670924 0.232003255630098 0.229882039705479 0.231658113140847 0.234483101530822 0.225682211631078 0.230273913103442 0.244279340214873 0.221792244373384 0.227680763433153 0.223647848537922 0.222140204612262 0.226381117325536 0.223962776858133 0.222369842612398 0.222409485612472 0.224801083172934 0.220731928813306 3 3|0 +|/ 2820220 2821053 2820683 2819123 2821430 + gene protein_coding_gene FALSE TRUE AT3G09180.1 similar to Os01g0263500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042658.1); contains domain SUBFAMILY NOT NAMED (PTHR13130:SF1); contains domain FAMILY NOT NAMED (PTHR13130) 0.131298301267004 0.87171547737671 0.407589796360607 1 1.15215294761094 11.7809651642795 0.131298301267004 0.194997502135457
AT2G33040_at 10.6016297486447 10.6850175830286 10.7197182714283 10.6714507058621 10.509168289277 10.2794304506489 10.8228146479202 10.8171896765944 10.4740801212422 10.5555589159271 10.8780908676308 11.0273301134420 10.6666544637804 10.6794076620943 11.0006015537345 10.8178349738808 10.6072884818656 10.6687830042149 10.4035104478265 0.100238889821656 0.0973244168465775 0.0930004056191529 0.0940191640485194 0.097263890613285 0.0979695463928408 0.0982622285976888 0.0931285660463382 0.101275380979976 0.101305518363242 0.0974677582796345 0.0958353483070374 0.0967226332120228 0.0999971573630455 0.0989205231202598 0.0930004056191529 0.1010501770451 0.102940821139261 0.100825744068945 2 2|0 -|/ 14026068 14026794 14026354.3 14025857 14028257 - gene protein_coding_gene FALSE TRUE AT2G33040.1 ATP synthase gamma chain, mitochondrial (ATPC) Identical to ATP synthase gamma chain, mitochondrial precursor (EC 3.6.3.14) (ATPC) [Arabidopsis Thaliana] (GB:Q96250); similar to ATPC2 (ATP synthase gamma chain 2) [Arabidopsis thaliana] (TAIR:AT1G15700.1); similar to ATP synthase gamma chain, mitochondrial precursor (GB:P26360); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) 0.064405705169466 0.871312598105031 0.407797538494942 1 1.15181685843357 21.2737851142150 0.064405705169466 0.0431230567648402
AT3G11900_at 9.33277185577738 9.5720211693439 9.52164024137874 9.66602522752022 9.83511284640158 9.3615309147368 10.5155027029723 10.2228266805245 9.7346358153659 9.56804631070342 9.76296357213618 9.83404414645641 9.6596088011873 9.76958788832578 9.59865159362566 9.7593364488591 9.36888935200768 9.9421826774942 9.4145189869269 0.105239287767258 0.099374306197499 0.105996757562681 0.104132484885701 0.099374306197499 0.107279381429399 0.100476611875127 0.0994507472716586 0.116208917538221 0.099374306197499 0.100958591807290 0.0997369659795184 0.099374306197499 0.107673667494195 0.104441081593533 0.102144604671373 0.110232106138063 0.106825943209910 0.099374306197499 3 3 + 3759396 3760055 3759730.455 3758458 3760384 + gene protein_coding_gene FALSE TRUE AT3G11900.1 ANT1 (AROMATIC AND NEUTRAL TRANSPORTER 1); amino acid permease/ amino acid transporter encodes an amino acid transporter that transports aromatic and neutral amino acids, IAA, and 2,4-D. Expressed in all tissues with highest abundance in flowers and cauline leaves. a member of a small gene family in Arabidopsis and represents a new class of amino acid transporters. similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT4G38250.1); similar to amino acid transport protein (GB:AAB82307.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.087597802816197 -0.871097225517042 0.407908624704732 1 1.15163724317594 19.3955831703371 -0.087597802816197 0.107798798904456
AT1G57870_at 7.84302105519134 7.9057177995599 7.6299704863999 7.50540063810301 8.3837546916211 7.90843654787724 7.59507110163766 7.73179688824576 7.66422507837929 7.41946937512158 7.69864833417575 7.48193913361492 7.56240324479706 7.67786443630227 7.19929335514964 7.5983863522635 7.36572425463501 7.56981233453071 7.26062541646287 0.184240164894543 0.168715285474591 0.186487251727459 0.175537106236863 0.170508754225978 0.181433281187571 0.174992608427778 0.172589567212098 0.180988518800744 0.17819280705815 0.169664180214865 0.169376700662515 0.169885328493277 0.185758836297331 0.184834099678020 0.169113883638979 0.173526492962211 0.166207506913147 0.171228024058901 1 1 - 21435024 21436481 21435655.545 21434783 21439767 - gene protein_coding_gene FALSE TRUE AT1G57870.1 shaggy-related protein kinase kappa, putative / ASK-kappa, putative Identical to Shaggy-related protein kinase delta (EC 2.7.11.1) (ASK-delta) (ASK4) [Arabidopsis Thaliana] (GB:Q9FVS6); similar to shaggy-related protein kinase kappa / ASK-kappa (ASK10) [Arabidopsis thaliana] (TAIR:AT1G09840.6); similar to Protein kinase [Medicago truncatula] (GB:ABE91930.1); similar to GSK-3-like protein MsK4 [Medicago sativa] (GB:AAN63591.1); similar to putative salt-inducible protein kinase [Zea mays] (GB:AAU43771.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0795705936020041 0.871069588856215 0.407922880861765 1 1.15161419755000 15.2965789280819 0.0795705936020041 0.0889288512511292
AT1G07700_at 10.5184320005175 10.5577030826064 11.0037841079923 10.8610449531044 10.7554985205445 10.6934564637896 11.4210738118064 11.2047760584994 10.9702253405024 10.9502808453821 11.0277317175422 10.7217282325077 10.7250707505294 10.8859369215789 10.7661255756683 11.0431716597857 10.8980041498845 10.9789559407075 10.8224018090585 0.0661517510181709 0.0655081070866092 0.0674634208192205 0.066632391493163 0.0669624669492124 0.0670698222291693 0.0655081070866092 0.0684312895506277 0.0713121082845337 0.0657134197340348 0.0656701793872218 0.0663620187037 0.0675994676796684 0.0662005985530787 0.068103540663639 0.0655081070866092 0.0681035569139867 0.0709458333823972 0.0665463250812421 1 1|0 +|/ 2380364 2381080 2380612.3 2379644 2381359 + gene protein_coding_gene FALSE TRUE AT1G07700.1|AT1G07700.2|AT1G07700.3 thioredoxin family protein similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to thioredoxin 1 [Melopsittacus undulatus] (GB:AAO72714.1); similar to Os02g0567100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047177.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335)|similar to Os02g0567100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047177.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766)|similar to ATTRX4 (thioredoxin H-type 4), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G19730.1); similar to thioredoxin 1 [Melopsittacus undulatus] (GB:AAO72714.1); similar to Os02g0567100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047177.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766) -0.0652561367276001 -0.871011191894136 0.407953005640006 1 1.15156550354006 21.7745427666108 -0.0652561367276001 0.0466126581035414
AT3G52500_at 8.80271568893428 9.03713402208607 8.09270475307513 8.33239745617571 8.53207960504247 8.57131166752706 9.0410575775832 9.23293771029333 8.75823346316716 8.42862963999268 9.54157292955883 9.6598124929821 9.4878176925751 9.67246190008332 9.71687133667742 9.38595101690215 8.659296010172 9.47434329750172 8.79497197062177 0.141226520464434 0.135329431837755 0.138313940463986 0.135429912711499 0.137860735471808 0.138816616334782 0.141326223351258 0.139863870089233 0.155773833927351 0.144445136210069 0.131031193617888 0.136519148396562 0.138133906473502 0.135948922815233 0.141166358445771 0.133818038243872 0.139784162070490 0.140341227629905 0.141096979778638 3 3 - 19476706 19477180 19476966.455 19476477 19478364 - gene protein_coding_gene FALSE TRUE AT3G52500.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT4G16563.1); similar to aspartic protease [Fagopyrum esculentum] (GB:AAS48510.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) 0.071408132013459 0.870542011115763 0.408195095288197 1 1.15117437707144 17.7604810729982 0.071408132013459 0.0671937380683441
AT3G24800_at 5.88463134819887 6.38975972214249 6.16269027886842 6.0332048358731 6.78581177346061 6.9651496693048 6.65205049923624 7.20172853007703 6.5427101109454 6.89461684580945 7.20431721948459 7.11248120281256 7.01880142735466 7.11691560856285 7.09972947294669 7.16687077417102 6.85468151327595 7.01769124735275 7.04881126625477 0.211034428254703 0.195605051522623 0.202852598759041 0.200483582804881 0.191533965972480 0.203738826042188 0.210196234368553 0.204228160379949 0.220432194113563 0.190968029295113 0.195343719531682 0.195638351808114 0.193645193861884 0.202584286327576 0.208099821655039 0.194307034850215 0.209038125635323 0.20525943411645 0.192320138193160 3 3 + 9057118 9057766 9057546.636 9055516 9058005 + gene protein_coding_gene FALSE TRUE AT3G24800.1 PRT1 (PROTEOLYSIS 1); ubiquitin-protein ligase Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). Identical to E3 ubiquitin-protein ligase PRT1 (EC 6.3.2.-) (Proteolysis 1 protein) (PRT1) [Arabidopsis Thaliana] (GB:Q8LBL5;GB:O82767); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G18660.1); similar to Os02g0621500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047461.1); similar to Predicted E3 ubiquitin ligase (ISS) [Ostreococcus tauri] (GB:CAL53964.1); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0999474658525026 0.869127353534447 0.408925650064798 1 1.14999611670916 13.4607027317694 0.0999474658525026 0.134741607313745
AT2G24040_at 5.99188989002555 6.60002778478485 6.5276391465734 6.74206586800425 6.91541211739705 6.34390246765457 5.90673256181326 6.7642231614605 6.18008752955474 5.68903801118023 5.88202947449274 5.81750522802551 6.10970097434441 6.54714889512589 5.47553428637965 5.92403413700923 5.70728000811494 5.78236603601127 5.96299133254172 0.181463340928812 0.16952031710584 0.178045935506478 0.169338648695737 0.171020711408322 0.171502285840938 0.172425547052684 0.171461262706979 0.168782504037960 0.176892418472137 0.165133033185289 0.168343714462023 0.165133033185289 0.174368800575264 0.174890795465260 0.175736416267429 0.189956422869441 0.17201610669586 0.172515445226264 2 2|0 +|/ 10231110 10231586 10231335.8 10231025 10231708 + gene protein_coding_gene FALSE TRUE AT2G24040.1 hydrophobic protein, putative / low temperature and salt responsive protein, putative Identical to UPF057 membrane protein At2g24040 [Arabidopsis Thaliana] (GB:O82232;GB:Q53XD6); similar to hydrophobic protein, putative / low temperature and salt responsive protein, putative [Arabidopsis thaliana] (TAIR:AT4G28088.1); similar to Protein of unknown function UPF0057 [Medicago truncatula] (GB:ABE78792.1); contains InterPro domain Protein of unknown function UPF0057; (InterPro:IPR000612) 0.139098736282669 0.86845435265575 0.409273523837441 1 1.14943613223327 12.3988560435626 0.139098736282669 0.210368136837118
AT2G17410_at 5.50058502849988 5.74117715801407 5.68364420083574 5.616631441759 6.02195027731289 5.87102724669679 5.99487749725236 6.00182080458167 4.98941978466922 4.98485558968046 5.21343302608117 5.07156983691142 5.26484607365938 5.0822900023121 5.16058202349912 5.03312115724619 5.36659736335344 5.06810849745362 5.06872828834203 0.137168156819666 0.136370708945910 0.140635778330809 0.136553130118034 0.139640495580424 0.138286074639135 0.140777415584117 0.144859507147346 0.140105362520100 0.139749024294994 0.137855912463664 0.137661010931922 0.141944342387847 0.141380061387536 0.136665444242114 0.137276286671747 0.141370893288739 0.144862917622030 0.137622784390712 2 2|0 +|/ 7568069 7570524 7569155.952 7566080 7570834 + gene protein_coding_gene FALSE TRUE AT2G17410.1 ARID/BRIGHT DNA-binding domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G76510.2); similar to AT-rich interaction re (GB:ABE82605.1); similar to Os06g0622300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058097.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) 0.0659660564490481 0.866667885204731 0.410197960795428 1 1.14795139909931 10.8899157327666 0.0659660564490481 0.0505133649169149
AT1G53400_at 9.3474550337132 9.36363499451646 9.1004359368343 9.3235100147568 9.89758545205937 9.4920268115017 8.89941093514735 8.90431780334102 9.6118838782976 9.31142788832986 9.5642723123408 9.33395816740524 9.32307016687723 9.46646232508367 9.26371794320846 9.46631832727074 8.9482821859449 9.24165311389535 9.5744724019791 0.0924207773679743 0.0890671758621244 0.096839255671621 0.0908654411420587 0.090048076971996 0.0955084518820464 0.0906234567380197 0.0890671758621244 0.104434211114983 0.0911930606913938 0.0899920326945884 0.0890671758621244 0.090257021415563 0.095262820793794 0.0909330554285191 0.0890671758621244 0.098267745175606 0.0989062559221088 0.0917614151624278 1 1 + 19928684 19930034 19929650.727 19928420 19930299 + gene protein_coding_gene FALSE TRUE AT1G53400.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G16960.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB63530.1); similar to Os09g0345000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062935.1); contains domain SUBFAMILY NOT NAMED (PTHR13609:SF2); contains domain FAMILY NOT NAMED (PTHR13609) 0.0756951451631587 0.866127214743632 0.410478029666156 1 1.14750254489887 18.7036612263782 0.0756951451631587 0.0801535931508797
AT4G22920_at 7.59561228460264 8.0498763275368 9.19888643602119 8.99661071797858 9.43168504501057 8.75849692070352 9.11133505375146 8.47341087705605 7.67914187789541 8.1289210532395 6.97222891632012 6.4559663656707 7.77941976469134 7.77361684903071 5.7995843165397 8.12531820249327 7.9851197124051 7.56324991315983 7.73782527382766 0.232894242278739 0.217328303747687 0.230212444693158 0.233409078894172 0.230032569354217 0.226595970093994 0.231422013767542 0.221607740760165 0.244011967331036 0.219759663185464 0.220008855779624 0.221671069858029 0.227196129458961 0.224295865211657 0.237435616259076 0.217066095387305 0.232699342793672 0.227307889221062 0.219166879270275 4 4 - 12016797 12017615 12017101.455 12016536 12018503 - gene protein_coding_gene FALSE TRUE AT4G22920.1 Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G11910.1); similar to senescence-inducible chloroplast stay-green protein 1 [Lycopersicon esculentum] (GB:AAY98500.1) 0.123522373788192 0.865418966825656 0.410845108041092 1 1.14691492077356 16.2797104111791 0.123522373788192 0.182110808732957
AT2G43630_at 8.57588246856171 8.47640972811657 8.48806606477599 8.39410065924493 8.6628615297227 8.57847377101545 8.87764620066351 8.90048190607742 8.5666164997704 8.8966095431367 8.7454518019847 8.92733700445403 8.62032198766261 8.68376033404947 9.24910500074377 8.85184275708986 8.64965515502925 8.69801763776586 8.78161212859327 0.117255600132052 0.115667234590610 0.123376950393928 0.124189137035656 0.120880825150235 0.114712854789037 0.124216787751596 0.119252152815266 0.122838215046695 0.118645590988270 0.121175889415454 0.123281941086484 0.114314822797267 0.118931126377348 0.118957432045107 0.118235250461720 0.116842580250259 0.117700230901011 0.120574477490397 2 2|0 +|/ 18103881 18104337 18104127 18102852 18104565 + gene protein_coding_gene FALSE TRUE AT2G43630.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT3G59640.2); similar to glycine-rich protein, related [Medicago truncatula] (GB:ABE86768.1) -0.0609112501588571 -0.865376861707197 0.41086693801868 1 1.14687999919425 17.3949732161961 -0.0609112501588571 0.0281005216663276
AT4G10060_at 10.4068486405223 10.5044142595983 10.6581153911745 10.6895376058893 10.8618630858344 10.7424748614730 11.0376576374911 10.8736644874515 11.0964262310641 11.3757278952217 11.2445069237498 11.1522856174420 11.1074724992698 10.9709352763342 11.0885399705018 11.3138189293760 10.9642642640238 11.0879205786748 11.3518341960007 0.0770928971844376 0.0774349318024937 0.0821879363055893 0.0786136350968396 0.0777332881100319 0.0806670725906489 0.0828162117102871 0.0784021216145845 0.0832606468057648 0.0796058878431824 0.0770928971844376 0.0770928971844376 0.078493395190602 0.0891747908143772 0.0813788988787073 0.0780200598663907 0.0938395031565575 0.0835090650785503 0.0812635653944782 4 4 + 6294594 6295222 6294945.455 6288850 6295398 + gene protein_coding_gene FALSE TRUE AT4G10060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49900.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G33700.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G24180.2); similar to unknown protein [Oryza sativa] (GB:AAL31035.1); similar to Os11g0242100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067588.1); similar to At5g49900 [Oryza sativa (japonica cultivar-group)] (GB:AAX95400.1); contains InterPro domain Protein of unknown function DUF608; (InterPro:IPR006775) -0.0630466434234664 -0.864792032483627 0.411170235280696 1 1.14639509249051 21.9172623869378 -0.0630466434234664 0.0393309154755021
AT1G22920_at 7.90958494142402 8.07555995327084 7.80173704203553 7.9251508959221 7.59376621371184 7.7321089764336 7.4083466785956 7.56335406253694 6.95597903003533 7.14586149081265 6.87783037476552 7.52232180785767 6.89503255052606 7.29937835853101 7.3191534297781 7.49659517698462 6.84850028922181 7.05160149710771 7.06642345862472 0.200782416086095 0.189036415583076 0.193968912588562 0.189995249240632 0.188649511432601 0.198324473884760 0.195145856898115 0.195271209502188 0.211267522382880 0.190281235112236 0.194265250926642 0.191062993855339 0.213082598879858 0.194480387510255 0.195632089996260 0.194083675357446 0.206277724104636 0.199708042825222 0.189766846445209 1 1 - 8109873 8111118 8110521 8109703 8112040 - gene protein_coding_gene FALSE TRUE AT1G22920.1|AT1G22920.2 AJH1 (COP9-signalosome 5A) AJH1 encodes a protein similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Encodes a subunit of the COP9 complex that is involved in protein deneddylation. Plants with mutations in CSN5A and CSN5B have a de-etiolated phenotype. Identical to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1) (CSN5B) [Arabidopsis Thaliana] (GB:Q8LAZ7;GB:O23130;GB:O82524;GB:Q84WE7); similar to AJH2 (COP9-signalosome 5B), protein binding [Arabidopsis thaliana] (TAIR:AT1G71230.1); similar to Mov34-1; Invasin/intimin cell-adhesion [Medicago truncatula] (GB:ABE80408.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964)|Identical to COP9 signalosome complex subunit 5b (EC 3.4.-.-) (Signalosome subunit 5b) (Jun activation domain-binding homolog 1) (CSN5B) [Arabidopsis Thaliana] (GB:Q8LAZ7;GB:O23130;GB:O82524;GB:Q84WE7); similar to AJH2 (COP9-signalosome 5B), protein binding [Arabidopsis thaliana] (TAIR:AT1G71230.1); similar to putative JUN kinase activation domain binding protein [Medicago sativa] (GB:AAC26484.1); similar to Mov34-1; Invasin/intimin cell-adhesion [Medicago truncatula] (GB:ABE80408.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639); contains InterPro domain Invasin/intimin cell-adhesion; (InterPro:IPR008964) 0.0658465327539568 0.864307011130692 0.411421890956428 1 1.14599314600703 14.8611459348684 0.0658465327539568 0.0507332682052289
AT1G05910_at 7.05767076996513 6.7115432962534 6.70735201232974 6.73086285883849 6.43013067924219 6.58269049861736 6.66081520869606 6.83277051528296 5.33769825358244 6.03352696723751 5.51843666130738 5.97989654481529 6.0425448947794 5.46383745420741 5.90359284495914 5.99339429766025 6.3327347089827 5.26027176407764 5.89070661853046 0.199774484138221 0.208291105742149 0.199774484138221 0.203718509170618 0.200817634106557 0.203719586365417 0.199774484138221 0.200052266130309 0.225236941620994 0.201731218672788 0.201414332212358 0.202254423800998 0.201369592448532 0.205675226056671 0.209882532139468 0.199774484138221 0.200039490434654 0.200892421142418 0.203938024078111 1 1 + 1795770 1796468 1796111.727 1790223 1796646 + gene protein_coding_gene FALSE TRUE AT1G05910.1 cell division cycle protein 48-related / CDC48-related similar to AAA-type ATPase family protein [Arabidopsis thaliana] (TAIR:AT3G15120.1); similar to bromodomain protein 103 [Zea mays] (GB:AAN41251.1); similar to Os09g0515100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063664.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0725397843636302 -0.864029160518022 0.411566103944240 1 1.14576296976368 12.4971374429692 -0.0725397843636302 0.0720207093697204
AT1G08980_at 9.7989837961082 10.0207541310530 9.42958716782239 9.31083205669001 10.4566746861320 10.2027201974705 9.0787551397666 8.74825124592551 9.4950576226459 9.55581758648642 9.42675799338468 8.89119975248214 9.24276778394588 9.2550334393905 9.33584668282947 8.67027596972292 9.38390108541907 9.29274216293731 9.36386566350495 0.101996040332703 0.0988366057542413 0.0982391501838905 0.10245391378454 0.101604886221486 0.0980765910541846 0.103972825944532 0.103386214423415 0.108696992288788 0.0980765910541846 0.101286876508484 0.100046480622832 0.101889122167342 0.102813406095048 0.10372801854285 0.101900733062040 0.105787880065734 0.102499354523808 0.0980765910541846 1 1 + 2885712 2886409 2886085.818 2884414 2886623 + gene protein_coding_gene FALSE TRUE AT1G08980.1 ATAMI1 (AMIDASE-LIKE PROTEIN 1); amidase Encodes an enzyme with similarity to bacterial acylamidohydrolases and exhibits indole-3-acetamide amidohydrolase activity in vitro. This enzyme may be involved in the in vivo biosynthesis of indole-acetic acid from indole-3-acetamide, a native metabolite of A. thaliana. similar to chloroplast outer membrane translocon subunit, putative [Arabidopsis thaliana] (TAIR:AT3G17970.1); similar to Amidase [Medicago truncatula] (GB:ABE90137.1); contains InterPro domain Amidase; (InterPro:IPR000120) 0.0770013833501562 0.86314005818511 0.412027814437173 1 1.14502683277637 18.9602677524426 0.0770013833501562 0.0842494665911969
AT1G79940_at 8.17794789410255 8.37752166496244 8.37651479419063 8.04832864198693 8.1997329398847 8.04199306602586 7.97760375830862 7.76211420150624 7.59242979507507 8.00798266376174 7.68859344498231 8.07836502083745 7.73493892575144 7.95676271631552 7.9036187058017 7.73701439482434 7.88865183990378 7.78373060492748 7.76373058948249 0.142181470261852 0.142064265664447 0.134243819287985 0.137472131409521 0.140168668244990 0.135734182635912 0.146549884808711 0.141329849945540 0.148494014713968 0.138091633978137 0.145472993486711 0.137852964147165 0.134243819287985 0.139112095088169 0.144898761790919 0.136764913195228 0.149698302544903 0.135783951058907 0.142450565197948 1 1 + 30077574 30077903 30077735.636 30074497 30078232 + gene protein_coding_gene FALSE TRUE AT1G79940.1|AT1G79940.2 heat shock protein binding / unfolded protein binding similar to DNAJ heat shock N-terminal domain-containing protein / sec63 domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G21180.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL53183.1); similar to Os04g0307200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052421.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Sec63; (InterPro:IPR004179); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.0756286273484856 0.861890566153284 0.41267729096373 1 1.14399336761164 15.9374731898415 0.0756286273484856 0.0809580453365102
AT1G78140_at 8.76768053983053 9.30757127268367 9.0151447034846 8.89136256173803 9.87666558598714 9.1665621109291 9.98647251986683 9.5884994421508 8.87008053465577 9.36441847802553 9.64402534493087 9.58369160358117 9.28361476336716 9.628160148027 9.29340638689033 9.77751232336802 9.62804637314914 9.54945998575253 9.18444701288227 0.181323904744215 0.168337416567926 0.180470735582464 0.178168620424263 0.172884502341703 0.18483442556406 0.168337416567926 0.179230555982028 0.201894480430059 0.168337416567926 0.173817014261217 0.168337416567926 0.174368470803027 0.171196780375431 0.187593830080837 0.169528974628629 0.186295650746091 0.179702850133558 0.172816401521810 1 1 - 29406873 29407588 29407210.636 29406652 29408839 - gene protein_coding_gene FALSE TRUE AT1G78140.1 methyltransferase-related similar to methyltransferase-related [Arabidopsis thaliana] (TAIR:AT2G41040.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC99645.1); similar to Os08g0411200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061786.1); similar to Os06g0646000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058196.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.116859368923591 0.861393140833187 0.412936049129555 1 1.14358228740048 18.6690639877444 0.116859368923591 0.170389303676231
AT4G13630_at 5.80740017410924 5.74890588886317 5.8176732904743 5.5624716580646 6.48610156866235 5.57387828560374 5.53159252386696 5.43990457954989 4.98411578632846 4.9933964863783 4.674758199264 4.53486730967399 4.79852932360857 4.902597355886 4.88806044127431 4.89815582564538 5.28338859833959 5.01451097747559 4.64600774579557 0.23652065255434 0.225154434291089 0.233077114989451 0.228871996484406 0.239533179138268 0.247381865598194 0.224174799388787 0.228497845043197 0.231765833690147 0.228987342167967 0.227124619876331 0.224174799388787 0.227742647681378 0.229219275277246 0.230942570700848 0.228597624411063 0.238907020741998 0.231065504748593 0.239220279562657 4 4 - 7934089 7934784 7934499.273 7933904 7936512 - gene protein_coding_gene FALSE TRUE AT4G13630.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04890.1); similar to Protein of unknown function, DUF593, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95673.1); similar to Os03g0259900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049616.1); similar to Os04g0311500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052441.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.113966120082874 0.860418752199355 0.413443251673399 1 1.1427776057904 10.6204235845143 0.113966120082874 0.165002649099639
AT3G63260_at 6.90231059783677 7.18108175412549 7.08027712628833 7.0563361063254 6.92967284133114 7.41549222720992 7.2547116854257 7.6354980226966 7.13973258255059 7.09219950724152 7.11332036789273 7.07671125817284 7.30612844940271 7.0555378435889 6.70490522516286 7.33406447929503 6.9928331343312 6.89571129377386 7.12341999600086 0.167434049302092 0.161159028825135 0.170173472041225 0.161814049787237 0.157295789999192 0.174845065367142 0.15933079457619 0.168237409328843 0.175658127061264 0.165590721805535 0.158686519462135 0.161367793011073 0.159657541457969 0.163048083533838 0.162467724142766 0.155442586275880 0.183662179946283 0.173176717452163 0.161272913547967 3 3|0 -|/ 23384072 23384886 23384372.75 23383856 23385982 - gene protein_coding_gene FALSE TRUE AT3G63260.1|AT3G63260.2 ATMRK1 (Arabidopsis thaliana MLK/Raf-related protein kinase 1); kinase/ protein threonine/tyrosine kinase|ATMRK1 (Arabidopsis thaliana MLK/Raf-related protein kinase 1); kinase protein kinase, similar to mammal mixed-lineage kinase and Raf protein kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G22750.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06454.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0907525642721247 -0.860263449580539 0.413524132411014 1 1.14264942146589 14.2710986460133 -0.0907525642721247 0.117282714254750
AT3G16630_at 8.60913987494616 8.65859723388926 8.31680416929913 8.49100110028733 8.8710113334767 8.80469907862468 8.5931736132992 8.62248628583368 8.75912442146647 8.7674499858609 9.25241168553736 9.09033981623998 8.76743655780921 9.07788350355585 8.80954186742973 8.89562692798259 8.62549766665592 8.99801967807672 8.9232274587573 0.124126284970503 0.11777444946699 0.123355281283569 0.118715941802772 0.113679779669427 0.121851487505018 0.115315920252861 0.119017233817826 0.131888034289615 0.114727546715940 0.111970288035124 0.115653707454423 0.110422404876820 0.126251163058071 0.119014577688699 0.110422404876820 0.118609622753271 0.119205958496309 0.115793030365641 3 3 - 5662718 5663395 5663095 5662390 5667809 - gene protein_coding_gene FALSE TRUE AT3G16630.1|AT3G16630.2 ATKINESIN-13A/KINESIN-13A; microtubule motor Kinesin-13A localized to entire Golgi stacks. Involved in trichome development. similar to kinesin motor family protein [Arabidopsis thaliana] (TAIR:AT3G16060.1); similar to central motor kinesin 1 [Gossypium hirsutum] (GB:AAQ18797.1); similar to internal-motor kinesin [Nicotiana tabacum] (GB:AAZ79373.1); similar to BY-2 kinesin-like protein 10 [Nicotiana tabacum] (GB:BAB40710.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752) 0.0615118796562937 0.859578443838655 0.413881012198873 1 1.14208425698858 17.4989617536766 0.0615118796562937 0.0337554862011311
AT1G54370_at 8.02526826820846 8.27488598493477 7.81130430692622 8.16270756946693 8.14612119103204 7.95127012046788 7.24593293639799 7.4155399193796 7.90748501329202 7.29546621476494 7.30235807565569 8.03226396784128 7.4235334983168 7.44886593057612 6.8949291905748 7.70144337074507 7.75892524119447 7.71410378992108 7.76686438713854 0.235735061254241 0.227638775115187 0.249653262542232 0.246343212614748 0.23937026245246 0.24500384385809 0.235451448405809 0.232597037977884 0.245393127826888 0.237634338153195 0.235878280127228 0.235438116301962 0.229594967345488 0.246949973134632 0.258234459470039 0.229801790897900 0.271648636211148 0.227638775115187 0.229114711397306 1 1 - 20297047 20298150 20297465.444 20296818 20300798 - gene protein_coding_gene FALSE TRUE AT1G54370.1 ATNHX5/NHX5 (NA+/H+ ANTIPORTER 5); sodium:hydrogen antiporter Identical to Sodium/hydrogen exchanger 5 (Na(+)/H(+) exchanger 5) (NHE-5) (NHX5) [Arabidopsis Thaliana] (GB:Q8S396;GB:Q9SLJ7); similar to sodium proton exchanger, putative (NHX6) [Arabidopsis thaliana] (TAIR:AT1G79610.1); similar to Na+/H+ antiporter [Populus tomentosa] (GB:AAX37333.1); similar to Na+/H+ antiporter, isoform 2 [Solanum lycopersicum] (GB:CAC83608.1); similar to Sodium/hydrogen exchanger 6 (Na(+)/H(+) exchanger 6) (NHE-6) (GB:Q8RWU6); contains InterPro domain Sodium/hydrogen exchanger subfamily; (InterPro:IPR004709); contains InterPro domain Sodium/hydrogen exchanger; (InterPro:IPR006153) 0.0776958488905288 0.859063019790455 0.414149684501080 1 1.14165925161478 15.4747078311859 0.0776958488905288 0.0869634942978106
AT1G03160_at 7.39761019629499 7.3237252109166 6.95409956083747 7.09841824417137 7.46820741969773 7.17735951904469 7.5498511474015 7.78394371657085 6.76585348727831 6.50567004154649 6.77682122959399 6.9640782584102 7.02386470652257 7.28695794956518 7.46666193789872 7.3870387566153 6.78647432282345 6.84357945211815 6.48260109842027 0.153998615325626 0.156595383047473 0.159688763128142 0.158879527444595 0.157558433544192 0.159970362471389 0.158654904431951 0.160302100990488 0.162678020789233 0.16724104264751 0.159560449226677 0.153253941293686 0.155982851565704 0.157119070507853 0.157260000859893 0.156561710270617 0.164151707551421 0.161446260637357 0.165325237589013 1 1|0 +|/ 763368 764469 763975.778 761282 766158 + gene protein_coding_gene FALSE TRUE AT1G03160.1|AT1G03160.2 FZL (FZO-LIKE); GTP binding / GTPase/ thiamin-phosphate diphosphorylase A new plant-specific member of the dynamin superfamily; defines a new protein class within the dynamin superfamily of membrane remodeling GTPases that regulates organization of the thylakoid network in plants. Targeted to chloroplasts and associated with thylakoid and envelope membranes as punctate structures. Knockout mutants have abnormalities in chloroplast and thylakoid morphology, including disorganized grana stacks and alterations in the relative proportions of grana and stroma thylakoids. Overexpression of FZL-GFP also conferred defects in thylakoid organization. similar to Os05g0390100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055439.1); similar to Mitofusin 1 GTPase, involved in mitochondrila biogenesis (ISS) [Ostreococcus tauri] (GB:CAL55609.1); contains InterPro domain Thiamine monophosphate synthase; (InterPro:IPR003733); contains InterPro domain Dynamin; (InterPro:IPR001401) 0.0714824928767932 0.857989601354265 0.414709612407551 1 1.14077481579378 14.1699732697545 0.0714824928767932 0.0704395632517096
AT4G03400_at 8.93422326496955 9.22700465252658 9.25583637550963 9.34685306791926 9.67707839521497 9.33768179569627 9.47548685161128 9.5485312702007 9.31177042408131 9.46476952330651 10.1891278134468 9.17495573548333 9.63485928935878 9.78793247257735 8.65204370166617 9.3560384428877 9.30030021139736 9.04928002991906 9.277141776095 0.12846073593978 0.124544867589939 0.129000655976463 0.129379170231349 0.129647484914526 0.140866952097746 0.127370091500883 0.126685587184077 0.135954653463806 0.123664051768300 0.128406648834474 0.123664051768300 0.128792049360702 0.128067098299499 0.126924694784516 0.128730403650405 0.135516589774814 0.128458036864278 0.128884320370652 4 4 - 1497677 1498348 1498015 1497535 1499864 - gene protein_coding_gene FALSE TRUE AT4G03400.1 DFL2 (DWARF IN LIGHT 2) Encodes a GH3-related gene involved in red light-specific hypocotyl elongation. Analysis of sense and antisense transgenic plants suggests that DFL2 is located downstream of red light signal transduction and determines the degree of hypocotyl elongation. similar to JAR1 (JASMONATE RESISTANT 1) [Arabidopsis thaliana] (TAIR:AT2G46370.2); similar to jasmonic acid-amino acid-conjugating enzyme [Nicotiana attenuata] (GB:ABC87760.1); contains InterPro domain GH3 auxin-responsive promoter; (InterPro:IPR004993) 0.0749454348445666 0.857544959278057 0.414941706809322 1 1.14040872416797 18.7224841858325 0.0749454348445666 0.0801544888137052
AT1G16860_at 5.01886940320274 5.32345204453868 4.03085172409505 4.5907245862431 4.19701669414222 4.56027637991483 5.02715286647834 5.98982030253914 5.65981761236032 4.88075598469862 6.44786950917153 6.17286378561941 6.24042273654311 6.19573511277646 6.31483107476567 6.00150430051132 5.35403903092301 5.40084509021411 5.34300894243908 0.178127788979977 0.177141945072961 0.189056795074216 0.182952468706765 0.177626068327402 0.185634057964283 0.183426487214849 0.180667726447277 0.182035842649622 0.179145422307673 0.184111568185768 0.179898590302603 0.177473012698371 0.186037330545529 0.177294268257824 0.180735449301404 0.189903587646227 0.183421448051578 0.194549603564685 1 1 + 5769438 5770149 5769768.909 5767293 5770552 + gene protein_coding_gene FALSE TRUE AT1G16860.1 merozoite surface protein-related similar to balbiani ring 1-related / BR1-related [Arabidopsis thaliana] (TAIR:AT1G78880.1); similar to Os08g0230200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061297.1); similar to Pentaxin [Medicago truncatula] (GB:ABE85291.1); similar to Os04g0606500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053801.1); contains domain UBIQUITIN SPECIFIC PROTEASE UBPY-RELATED (PTHR10420:SF18); contains domain UBIQUITIN SPECIFIC PROTEASE FAMILY C19-RELATED (PTHR10420) -0.136809995595678 -0.857222516870401 0.415110072364653 1 1.14014334273513 10.4975411717601 -0.136809995595678 0.209454372938432
AT1G30500_at 5.97132627976534 5.9006803092184 6.28276576031494 6.41577712156415 7.01427764674082 6.44205387207578 6.69703533751647 6.72797224114214 5.23410061941547 5.31472720867115 5.33033631977343 5.08743634403779 5.97569700854284 5.54702762596219 4.75293383800563 6.05655867772507 5.60227282114417 5.33583068009839 5.97420981580555 0.242819279326434 0.242417618421887 0.240887303590928 0.250752275763124 0.256142730272596 0.246138050721078 0.252666685758406 0.254807882574443 0.246854147046065 0.240827235071445 0.242194856949037 0.243382165890157 0.245243703363572 0.246989638979522 0.247088123612883 0.240827235071445 0.246243255726153 0.249561341854995 0.240827235071445 1 1|0 -|/ 10804720 10805085 10804833 10804432 10806301 - gene protein_coding_gene FALSE TRUE AT1G30500.1|AT1G30500.2 CCAAT-binding transcription factor (CBF-B/NF-YA) family protein Identical to Nuclear transcription factor Y subunit A-7 (AtNF-YA-7) (NFYA7) [Arabidopsis Thaliana] (GB:Q84JP1;GB:Q9S9P9); similar to CCAAT-binding transcription factor (CBF-B/NF-YA) family protein [Arabidopsis thaliana] (TAIR:AT2G34720.1); similar to CCAAT-box transcription factor complex WHAP5, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99388.2); similar to Os12g0613000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067261.1); contains InterPro domain CCAAT-binding transcription factor, subunit B; (InterPro:IPR001289) 0.083898754021898 0.856938185378969 0.415258577776991 1 1.13990939651625 11.9158315105632 0.083898754021898 0.102538358933274
AT1G28420_at 6.5735786482473 6.58914188182325 6.75300293595298 6.61013128178827 6.98037643508697 6.58021424851932 6.78536084014158 6.66516467716047 6.91632206385591 6.72041999446147 6.81760035281456 6.77785324661222 6.6161984126855 6.49658785018017 6.60100555361439 6.81863794780444 6.63801580876551 6.36069534308509 6.95964110092207 0.183284455238460 0.178810299574907 0.173001342491766 0.177040576623625 0.179778729516489 0.188908237351706 0.181581381167653 0.175129434818357 0.185590166548307 0.18923895645206 0.177579977433635 0.174196930775048 0.179864654265494 0.177501941793713 0.180587201342424 0.182976207388052 0.184915141412840 0.178678730851332 0.180075308020213 1 1 + 9986892 9987420 9987101.455 9979928 9987624 + gene protein_coding_gene FALSE TRUE AT1G28420.1 HB-1 (homeobox-1); transcription factor similar to homeobox transcription factor, putative [Arabidopsis thaliana] (TAIR:AT5G44180.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10652.1); similar to Os05g0562400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056321.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain DDT; (InterPro:IPR004022) -0.0735085125704236 -0.856680984470627 0.41539294505453 1 1.13969782856066 13.4452640523525 -0.0735085125704236 0.0764642021193319
AT2G26570_at 7.88568146047179 8.01730599752928 8.20325641851268 8.34337732236088 8.24347288732906 8.06160834251979 7.94475811155887 8.012394683895 8.29421595389854 8.56748889151608 8.22750161840825 8.27979520999646 8.22705809745795 8.24615502116141 8.04415090804855 8.32670414586133 8.39932666716321 8.56822947864329 8.3656950789781 0.106720377070047 0.100079764986058 0.108328813151111 0.101604026672715 0.102142499818784 0.101587080104037 0.102512280798403 0.109632471883498 0.113899455897531 0.103355128993354 0.104977930650013 0.104790589975213 0.0987883494918791 0.107264640154188 0.112070405000289 0.101838755118895 0.100716799213054 0.103729006830822 0.102477254329962 2 2 + 11308608 11309060 11308840 11306222 11309269 + gene protein_coding_gene FALSE TRUE AT2G26570.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42880.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G33390.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88908.1); contains InterPro domain Protein of unknown function DUF827, plant; (InterPro:IPR008545) 0.0643127572642581 0.856184040112969 0.415652645774127 1 1.13928920183866 16.4384811287589 0.0643127572642581 0.0472690522602979
AT1G32490_at 6.19486028905373 6.35479473953543 6.51577705864498 6.26895402569369 6.83232284688795 6.35717080249944 6.44679282536127 6.05618025392111 5.23034937816217 5.7300198729226 5.31409329577927 5.77233256858169 5.18218149957141 5.65721712192742 5.12332333454327 5.51379199465396 5.5086972373681 5.63751643600492 5.57800173589978 0.232660764811042 0.220139438075522 0.226500073467032 0.221855892638174 0.221237364253613 0.230440429383298 0.224874223275430 0.228114305513067 0.232967608673821 0.233676668312566 0.221820237869827 0.225602069944208 0.222189397758764 0.220761308891578 0.237038096416943 0.223454510280642 0.257165787857297 0.236225784321798 0.223126971310257 1 1|0 -|/ 11742491 11743492 11743033.556 11742034 11749686 - gene protein_coding_gene FALSE TRUE AT1G32490.1 EMB2733/ESP3 (EMBRYO DEFECTIVE 2733); ATP-dependent RNA helicase Encodes a homolog of the yeast PRP2 protein, one of four related DEAH RNA helicases identified as essential cofactors for RNA splicing. similar to MEE29 (maternal effect embryo arrest 29), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT2G35340.1); similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT4G16680.1); similar to ATP-dependent RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G26560.1); similar to DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Danio rerio] (GB:NP_956318.1); similar to PREDICTED: similar to Putative pre-mRNA splicing factor RNA helicase (ATP-dependent RNA helicase #3) (DEAH-box protein 16) isoform 6 [Bos taurus] (GB:XP_872459.1); similar to RNA helicase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01767.1); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.090626506761265 0.856033437282624 0.415731372545943 1 1.13916540314614 11.866573862724 0.090626506761265 0.117988294677288
AT4G34830_at 7.58901519691671 7.34855186147851 7.45856315839308 7.04377071015893 7.28444631742384 7.23440299228876 7.92251890320845 7.83116398933565 6.78708543922103 6.6958587070234 6.79923985381563 7.65114786564728 7.42328899413455 7.22072066312588 7.53197365058538 7.45649720044652 7.38822757148706 6.77260707809795 6.64639205303661 0.132317353759152 0.133898224076826 0.135775503636258 0.134564477607403 0.133874101708739 0.137466133581359 0.135799155499031 0.134953252687722 0.141946499509540 0.136661872125155 0.134162320654005 0.13164404609055 0.134823978505151 0.133533536409962 0.132942733054232 0.131686884023588 0.140039708541596 0.136153664572552 0.137127758876133 4 4|0 -|/ 16600007 16603267 16602006.842 16599610 16606014 - gene protein_coding_gene FALSE TRUE AT4G34830.1 binding similar to EMB2745 (EMBRYO DEFECTIVE 2745), binding [Arabidopsis thaliana] (TAIR:AT5G39710.1); similar to Putative crp1 protein [Oryza sativa (japonica cultivar-group)] (GB:AAL76193.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65945.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP52447.2); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0765837167025838 0.855614954430861 0.415950186920602 1 1.13882149620590 14.4591749375311 0.0765837167025838 0.084907158595868
AT1G31780_at 7.32785234244949 8.02304961978327 7.0896686462066 7.45725793347153 7.77922236590668 7.35442833832119 7.41468597038292 7.6869473037034 7.02448843145162 7.37284426279205 7.77104426079504 7.684122999842 7.45812356212531 7.07503466073628 7.46919841543086 7.14603617862213 4.96559545656386 6.67291102241221 6.78429067638194 0.221909988020927 0.218991172753974 0.212268976054975 0.214377348420829 0.218166818980824 0.217017694496351 0.225026285264839 0.222787906606599 0.228436079519632 0.218687706123254 0.221409983411099 0.225560003476421 0.215795318778471 0.218049365910712 0.212324596870065 0.212533403221711 0.267748724226148 0.223099902106435 0.218551601079427 1 1 + 11393945 11394524 11394241.091 11391210 11394729 + gene protein_coding_gene FALSE TRUE AT1G31780.1 similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN52749.1); contains InterPro domain Conserved oligomeric complex COG6; (InterPro:IPR010490) -0.111636146039589 -0.85547779688978 0.416021920771285 1 1.13870881121055 14.5620387865820 -0.111636146039589 0.161692459716539
AT1G09920_at 8.03809494913894 8.39144492464466 8.29215123743365 8.22195745096287 8.43623332002735 8.30914319452144 8.2406862299636 8.24136518843038 7.65507355092968 7.85934323597077 7.93022195817792 7.91494085804118 7.35924821451206 7.88258199395308 7.61835614711585 7.74810018380215 7.86600733747409 7.81502076997324 7.62810583075199 0.147011475111235 0.143265453769537 0.141850204695741 0.146397853237099 0.144135414533715 0.143784649856936 0.140474957919976 0.144678789625774 0.147689043673259 0.148437057798278 0.144586280279117 0.139812603591070 0.152030482324836 0.151720285598857 0.139805613216779 0.141567096712081 0.156020839490248 0.145531815240628 0.152591057007714 1 1|0 -|/ 3224877 3226827 3225525.333 3224686 3227072 - gene protein_coding_gene FALSE TRUE AT1G09920.1 TRAF-type zinc finger-related similar to PRLI-interacting factor K [Arabidopsis thaliana] (TAIR:AT4G15420.1); similar to TRAF-type zinc finger, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96034.1); contains domain SUBFAMILY NOT NAMED (PTHR16295:SF6); contains domain FAMILY NOT NAMED (PTHR16295); contains domain Glucocorticoid receptor-like (DNA-binding domain) (SSF57716); contains domain Cysteine-rich DNA binding domain, (DM domain) (SSF82927) 0.0698044773444915 0.855378012639329 0.416074113711352 1 1.13862684052919 16.0118765062730 0.0698044773444915 0.0661095393689185
AT4G27990_at 9.4674119049057 9.78147987013781 9.80912387737736 9.93766098647209 10.1979163407442 9.71273647133533 9.92363438255318 9.92384790610757 9.68521861153852 9.521159485371 9.615261678593 9.13421251546188 9.73373683983158 9.7068391634078 9.3439469992268 9.8375838289168 9.6119591116242 9.62639089454885 9.4428659142411 0.0971457752493483 0.0919839728086607 0.0984983190992414 0.0919839728086607 0.0979160061959246 0.104626217359644 0.0996587966881593 0.0923609471968386 0.102889915808034 0.095368139001923 0.0936744831435429 0.0953012082256255 0.106887125831266 0.0992942864318256 0.101120090823163 0.0964252383300357 0.0967191504027897 0.0930792100113276 0.0960245374396497 4 4 - 13924066 13924501 13924235.909 13923779 13924698 - gene protein_coding_gene FALSE TRUE AT4G27990.1 YGGT family protein similar to EMB1990 (EMBRYO DEFECTIVE 1990) [Arabidopsis thaliana] (TAIR:AT3G07430.1); similar to Os07g0185300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059065.1); similar to ycf19 (ISS) [Ostreococcus tauri] (GB:CAL52377.1); contains InterPro domain Protein of unknown function YGGT; (InterPro:IPR003425) 0.0833796391453272 0.851965612228557 0.417861756398782 1 1.13582839872256 19.4072211587883 0.0833796391453272 0.102462395343014
AT3G29170_at 5.67996883799102 6.68116519566064 5.8539689092882 5.90149188288115 6.89552202547792 5.76067439407317 5.3987894789871 5.9022229641125 4.7566613968331 4.98283238161894 5.73993990274026 5.39135954042686 5.13325385915422 5.78617171416839 4.36090255598195 5.3485169812427 4.06698954739645 4.38032335221763 4.87120461237499 0.274160941635554 0.267660203054739 0.269499597566873 0.282291962532205 0.271763860135747 0.286369592281431 0.272411537741924 0.275166219366645 0.282134639730485 0.271061071654415 0.273368609605158 0.278317834185204 0.268898160139159 0.275957616113204 0.278030083516123 0.269945673096976 0.285445202493848 0.295594597715597 0.267978025896907 3 3 - 11137489 11138736 11138388.727 11137243 11139086 - gene protein_coding_gene FALSE TRUE AT3G29170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G19350.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91365.1); contains InterPro domain Protein of unknown function DUF872, eukaryotic; (InterPro:IPR008590) 0.171538534233005 0.848312783905715 0.419781292388095 1 1.13284308273172 10.9573079503632 0.171538534233005 0.276128062742021
AT1G56340_at 10.3469487203783 10.3981923969198 10.6962109838210 10.6486585240912 10.0359028097955 9.73722504239793 9.4288625101003 9.50315483687043 9.46234308837953 9.30916398921311 9.29350924020644 9.47868468343129 9.15921495640691 9.09513095919338 9.49162760633812 8.80755668952444 8.58131201175279 8.98753983134637 9.25108994861132 0.114976417555960 0.115266218759065 0.114976417555960 0.114976417555960 0.115125849167421 0.118039634698838 0.119271231445451 0.117948624420617 0.130075281137797 0.120282325418708 0.116880400560355 0.114976417555960 0.116763554643480 0.120790290695062 0.116950411677282 0.116177011454593 0.136187826911173 0.126534693766107 0.122651228377849 1 1|0 -|/ 21093845 21095044 21094397.429 21093509 21096324 - gene protein_coding_gene FALSE TRUE AT1G56340.1|AT1G56340.2 CRT1 (CALRETICULIN 1); calcium ion binding Encodes calreticulin CRT1. Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to calreticulin-1 [Glycine max] (GB:BAF36056.1); similar to calreticulin (GB:AAA80652.1); similar to Calreticulin-2 precursor (GB:Q38858); contains InterPro domain Calreticulin/calnexin, P; (InterPro:IPR009033); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin; (InterPro:IPR009169); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580)|Identical to Calreticulin-1 precursor (CRT1) [Arabidopsis Thaliana] (GB:O04151); similar to calreticulin 2 (CRT2) [Arabidopsis thaliana] (TAIR:AT1G09210.1); similar to Calreticulin precursor (GB:P93508); similar to calreticulin (GB:AAA80652.1); similar to Calreticulin-2 precursor (GB:Q38858); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Calreticulin/calnexin; (InterPro:IPR001580) 0.0655830229164103 0.846743857331315 0.420607637791603 1 1.13156413384479 19.3257383143849 0.0655830229164103 0.0546192182703193
AT4G38270_at 5.90310232249133 5.78262804520561 5.88217263163006 5.90343172177045 5.98518370141662 5.98330871461952 5.46564444440803 5.6032176288837 5.38242971769887 5.56706290477989 5.19527698533736 5.16876651804623 5.43746330721251 5.49985004866427 5.49238123145826 5.513663996338 5.57040992154658 5.31338649949251 5.63547609715079 0.205063918135504 0.209148412524451 0.221549576076706 0.204570357820941 0.210459591545806 0.232599194849278 0.20879243072503 0.202471950912983 0.217849699216571 0.204938604277918 0.208214087242473 0.209686957573515 0.208062556030376 0.233779854651465 0.204994991078547 0.206717029206820 0.215198042795967 0.234557843386045 0.202471950912983 4 4 + 17940727 17941375 17941143.455 17938366 17941552 + gene protein_coding_gene FALSE TRUE AT4G38270.1 GAUT3 (Galacturonosyltransferase 3); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT1/LGT1 (Galacturonosyltransferase 1), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G61130.1); similar to putative glycosyl transferase protein A [Oryza sativa (japonica cultivar-group)] (GB:BAD61814.1); similar to 68 kDa protein [Cicer arietinum] (GB:CAB81547.1); similar to Glycosyltransferase QUASIMODO1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47337.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.0602264945403879 0.846524047986424 0.420723500684850 1 1.13138510820877 11.2771975113307 0.0602264945403879 0.0318608144998850
AT1G27950_at 9.64813297612787 9.90947588113356 9.25520216781502 9.38356611704414 10.2834184618777 10.0789085301971 10.7404830314987 11.0285509521539 11.4147240786094 10.9174151858007 12.0462874763230 12.1109566632186 11.3657742516118 11.5980656678631 11.8779921952254 10.8185561590381 10.5933079362982 11.4096664658319 10.7980703263655 0.0809437773157485 0.0829920162223476 0.0871949795638417 0.0801332341140155 0.0799951420236588 0.0800176641807206 0.0793556783391112 0.0785640507176006 0.0790367788827943 0.0774043935933379 0.077579205631339 0.0777204767964226 0.0769785976410015 0.0828624359633965 0.0798059509733175 0.0769785976410015 0.0813661719079912 0.0769785976410015 0.0801439162502613 1 1 + 9740755 9741945 9741421.091 9740691 9742146 + gene protein_coding_gene FALSE TRUE AT1G27950.1 lipid transfer protein-related Identical to Uncharacterized GPI-anchored protein At1g27950 precursor [Arabidopsis Thaliana] (GB:Q9C7F7;GB:Q570M7;GB:Q8LEI0); similar to protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (YLS3) [Arabidopsis thaliana] (TAIR:AT2G44290.1); similar to lipid transfer protein-like protein [Thlaspi caerulescens] (GB:ABI81469.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.0736071179969735 -0.846147714676147 0.420921919962032 1 1.13107869007910 21.3014567891567 -0.0736071179969735 0.0792251842396698
ATCG00130_at 10.539025241119 11.8393086731104 10.8838385427959 11.2937653020539 10.6032187867504 10.4380742286210 11.0257212067428 11.5071205095826 11.9366230542980 11.8553436452207 12.7992713663143 13.1649900248162 12.6620624673341 12.4449860280260 12.5786217300425 12.6665597730052 12.2657340590598 11.9672664759485 11.6982497687958 0.113021459110324 0.113802032839209 0.117875754572302 0.114634485409728 0.113010307181932 0.120296717986781 0.112444112591592 0.117161210724480 0.121931856192600 0.117338635662960 0.11200406217524 0.111242489212800 0.111242489212800 0.117868852489804 0.112683170290745 0.111242489212800 0.115346503652541 0.113739121255926 0.122906840653459 C C - 11654 12759 12120 11529 12798 - gene protein_coding_gene FALSE TRUE ATCG00130.1 ATPase F subunit. Identical to ATP synthase B chain (EC 3.6.3.14) (ATPase subunit I) (atpF) [Arabidopsis Thaliana] (GB:P56759); similar to ATP synthase CF0 B chain [Atropa belladonna] (GB:NP_783218.1); contains InterPro domain ATPase, F0 complex, subunit B/B' (InterPro:IPR002146) 0.157772320940060 0.845959333312498 0.421021267277738 1 1.13092534878932 23.2156383846836 0.157772320940060 0.251840320716383
AT3G26450_at 10.3436641800456 10.4370506067727 10.2940485167716 10.4629878946282 10.7768574976003 10.5530104706528 11.5729990217367 11.6161956206537 10.7529522760129 11.1971575069595 11.7944142379878 11.5286015210961 11.5625914636459 11.5566882703278 11.5211125678867 11.4003474137368 11.4012869073056 11.6372080683817 10.9003992752981 0.103330383330903 0.101274717990160 0.108954229400015 0.106200273262207 0.102106890952876 0.103818752164005 0.10200116594098 0.103929012432415 0.105060846189217 0.100611022787502 0.100076110658170 0.100581341800272 0.100294910405964 0.104950951450070 0.100902559090033 0.100598668907366 0.105291508233594 0.102695322785464 0.101997840850024 3 3|0 -|/ 9682968 9684500 9684012.1 9682535 9684605 - gene protein_coding_gene FALSE TRUE AT3G26450.1 major latex protein-related / MLP-related similar to major latex protein-related / MLP-related [Arabidopsis thaliana] (TAIR:AT3G26460.1); similar to ripening-induced protein [Fragaria vesca] (GB:CAA04770.1); contains InterPro domain Bet v I allergen; (InterPro:IPR000916) 0.064680178908453 0.845585881216604 0.421218264237695 1 1.13062144507117 22.0073272223008 0.064680178908453 0.0516952765402704
ATCG00520_at 11.1620999719497 11.7647303282694 11.5033033396662 11.7705723976536 11.3634085456519 11.1256702983722 11.6154087764544 12.0419734406079 11.5983110494812 11.7153990205459 12.0412619261926 12.6148791378851 12.2222473243154 12.1178031028751 11.9014581793911 12.1193658564914 11.6460001720336 11.9434467927931 11.6941457219566 0.0849797640679772 0.0849797640679772 0.0883705621088198 0.08818750411679 0.0849797640679772 0.0925023492287456 0.0855741220690372 0.0868021236876233 0.0963026004127832 0.0849797640679772 0.0873205701461887 0.0865838619766415 0.0866308168099867 0.0911261683536838 0.090960907467075 0.0849797640679772 0.0985811594945734 0.0877425666941434 0.0860571675070743 C C + 59838 60287 60055.545 59772 60326 + gene protein_coding_gene FALSE TRUE ATCG00520.1 Encodes a protein required for photosystem I assembly and stability. In cyanobacteria, loss of function mutation in this gene increases PSII/PSI ratio without any influence on photoautotrophic growth. Identical to Photosystem I assembly protein ycf4 (ycf4) [Arabidopsis Thaliana] (GB:P56788); similar to photosystem I assembly protein ycf4 [Gossypium hirsutum] (GB:YP_538946.1); contains InterPro domain Photosystem I assembly Ycf4; (InterPro:IPR003359) 0.100604031759110 0.844912137704124 0.421573828004804 1 1.13007345615182 23.4159424250740 0.100604031759110 0.141975820457840
AT1G51500_at 9.80260368983288 10.0250976821964 10.1867104279576 10.1473074602125 11.0474371968784 10.7273769759257 11.0264202863152 10.8266390739484 11.1426281022470 10.8989483255878 11.3408526366462 11.1845936655293 11.1560098138048 11.0905806330818 10.8769734086269 10.7799214489858 10.4891416832615 11.0963765893353 10.8508195564368 0.098861633204544 0.0962517843296076 0.0958095506164322 0.0970915079956683 0.0928881607804435 0.103307361917149 0.0933310188083726 0.0928881607804435 0.104783063883178 0.0968379088600967 0.0965374767926307 0.0957032395907487 0.0932826296202713 0.105259549620265 0.0965274240530198 0.0931080983254101 0.104047464404764 0.0971783753995375 0.0961270869057844 1 1 - 19101637 19102543 19102017.182 19101465 19104747 - gene protein_coding_gene FALSE TRUE AT1G51500.1 CER5 (ECERIFERUM 5); ATPase, coupled to transmembrane movement of substances Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones. Identical to White-brown complex homolog protein 12 (Protein ECERIFERUM5) (WBC12) [Arabidopsis Thaliana] (GB:Q9C8K2); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G51460.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT1G17840.1); similar to ABC transporter family protein [Arabidopsis thaliana] (TAIR:AT3G21090.1); similar to Os05g0222200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054952.1); similar to ABC transporter [Gossypium hirsutum] (GB:AAP80385.1); similar to Os04g0528300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053375.1); contains InterPro domain ABC-2 type transporter; (InterPro:IPR013525); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.0723460361610408 0.844626877782402 0.421724435002947 1 1.12984154976645 21.4566682139915 0.0723460361610408 0.076106137443014
AT1G03090_at 7.39636729553668 7.56691816720512 7.3402636408956 7.20502003094449 8.26012315385176 8.37195841667995 6.9911882201213 7.06841855473492 7.8260937414357 7.58536820811753 7.2902287502431 7.62565142198303 7.09315836611356 7.44336270988647 7.49408802921692 7.56426609244777 7.44506356164841 7.40786254423523 8.08988072729883 0.157226939717979 0.156809614915609 0.150399097257530 0.156270173929204 0.154981619992338 0.154235580666264 0.153176456768686 0.152108621446217 0.163889482598288 0.150652815716025 0.154531606852942 0.151618495738295 0.1527707537754 0.155405707454674 0.161319603950095 0.146498585576697 0.155716798880764 0.146498585576697 0.149893819944231 1 1|0 +|/ 742845 743682 743276.5 739679 744184 + gene protein_coding_gene FALSE TRUE AT1G03090.1|AT1G03090.2 MCCA (3-methylcrotonyl-CoA carboxylase 1) MCCA is the biotinylated subunit of the dimer MCCase, which is involved in leucine degradation. Both subunits are nuclear coded and the active enzyme is located in the mitochondrion. Identical to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor (EC 6.4.1.4) (3-methylcrotonyl-CoA carboxylase 1) (MCCase subunit alpha) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) (MCCA) [Arabidopsis Thaliana] (GB:Q42523;GB:Q9SA61); similar to CAC2 (acetyl co-enzyme A carboxylase biotin carboxylase subunit) [Arabidopsis thaliana] (TAIR:AT5G35360.1); similar to Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial precursor (3-methylcrotonyl-CoA carboxylase 1) (MCCase subunit alpha) (3-methylcrotonyl-CoA:carbon dioxide ligase subunit alpha) (GB:Q42777); similar to 3-methylcrotonyl-CoA carboxylase precursor (GB:AAA67356.1); similar to Rudiment single hybrid motif [Medicago truncatula] (GB:ABE80280.1); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Biotin-binding site; (InterPro:IPR001882); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Biotin carboxylase, C-terminal; (InterPro:IPR005482); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Carbamoyl-phosphate synthase L chain, ATP-binding; (InterPro:IPR005479); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain Biotin carboxylation region; (InterPro:IPR011764); contains InterPro domain Carbamoyl-phosphate synthetase large chain, N-terminal; (InterPro:IPR005481) 0.0626487716906206 0.843419841239347 0.422362121252547 1 1.12886099316891 15.1521527233741 0.0626487716906206 0.0444080267719359
AT1G30690_at 5.59028843370232 5.63029869888992 5.34005004150443 4.74979716606651 7.03127827050007 6.56345960631832 7.79260935398512 7.6169219824788 8.13255603221814 6.7977355589806 9.42744216108407 8.68772650016414 8.19090197154853 8.70713430716655 8.7690158167543 7.24493803090074 6.34363584883315 7.61568403078922 7.80940339119006 0.285133321635132 0.273239956435485 0.270542904039256 0.288747100191291 0.265771325979399 0.278612866238246 0.263391458961902 0.263391458961902 0.270587079405609 0.263391458961902 0.269539620564653 0.263391458961902 0.266879179541490 0.269086044105172 0.270853993015407 0.265255098777320 0.291903372211436 0.275128972966716 0.265947998367592 1 1|0 +|/ 10889338 10890041 10889573.1 10887677 10890314 + gene protein_coding_gene FALSE TRUE AT1G30690.1|AT1G30690.2 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein|transporter Identical to Patellin-4 (PATL4) [Arabidopsis Thaliana] (GB:Q94C59;GB:Q9SA84); similar to PATL1 (PATELLIN 1), transporter [Arabidopsis thaliana] (TAIR:AT1G72150.1); similar to patellin 1 [Cucurbita pepo] (GB:ABB77236.1); similar to Os06g0671800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058333.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain GOLD; (InterPro:IPR009038); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) -0.096485920112274 -0.841987031501439 0.4231199549709 1 1.12769854312467 14.1409420246147 -0.096485920112274 0.134016243802127
AT3G20230_at 7.47037835850475 8.16727379549747 7.05984862503413 7.0745252974601 8.74845415866883 8.10643925862291 7.66100119281806 7.90640358166184 7.55676157217472 7.16231850762735 7.80692821018142 7.8223165089881 7.81874416806318 7.53896845703274 8.04464251853313 7.61919069864835 7.13219922725587 7.44073680968622 7.3960764353687 0.200573030165784 0.196121552804128 0.202009018182840 0.202518046378411 0.199424225197062 0.200791685935396 0.197810227852181 0.198154342148413 0.202874347617801 0.202419709807923 0.198368287023332 0.19908510005842 0.194092667497507 0.209407044839094 0.206174695978987 0.199595955831269 0.219184308617912 0.198528261262301 0.197243015530137 3 3|0 -|/ 7055734 7056651 7056234.4 7055359 7056764 - gene protein_coding_gene FALSE TRUE AT3G20230.1 50S ribosomal protein L18 family similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G08845.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07676.1); contains InterPro domain Ribosomal protein L18P/L5E; (InterPro:IPR005484) 0.113649794617165 0.841377381358763 0.423442694030732 1 1.12720442889572 15.2866328651279 0.113649794617165 0.169406649642728
AT1G06500_at 4.98842547413296 5.27015348357797 4.24104834480212 5.01859230134865 6.00541839389578 5.47947769617457 5.18265169638241 5.03762551408474 5.05328520883664 5.41294749611451 5.392238271959 5.68063822314562 5.0035990551647 6.13322797943466 5.36372931658363 5.45252797872657 5.30809942387646 5.39325461373555 5.44302007160173 0.221753126473464 0.220249926622623 0.229428767663728 0.220249926622623 0.225701011140507 0.241943766687012 0.224119976498852 0.226881444614927 0.223894594851875 0.221740995817811 0.222956511060891 0.220678634689942 0.22869372651907 0.220249926622623 0.235197353820958 0.223532847475051 0.228096754324956 0.224258186704552 0.233025919393837 1 1 + 1990180 1990552 1990367 1989478 1990729 + gene protein_coding_gene FALSE TRUE AT1G06500.1|AT1G06500.2|AT1G06500.3|AT1G06500.4 unknown protein 0.114625120494038 0.840971722984602 0.423657537795834 1 1.12687581299480 10.5374234213895 0.114625120494038 0.171454425564272
AT2G33700_at 5.26942055036197 5.46754113569715 5.5767697572445 5.65556247433287 6.21147820154034 6.21327303414041 5.87357885706075 5.76399284523096 5.43204052480971 5.55665084166552 5.31741972606544 5.15966696207929 5.21248257186075 4.96351707221736 5.04209648369799 5.5956714566386 5.45378239089003 5.11287215321239 5.29916785401357 0.259258739991166 0.258396400833412 0.264119436451068 0.259163531587373 0.263726001349411 0.269195039123311 0.256238561980196 0.268232644692904 0.279167996084775 0.267583645956892 0.272173080317768 0.258662081434690 0.256238561980196 0.25786860491566 0.267168477492720 0.256238561980196 0.260152616219128 0.266640746137083 0.263727886431936 2 2 + 14262061 14262832 14262545.455 14260500 14263069 + gene protein_coding_gene FALSE TRUE AT2G33700.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G51470.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE83255.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.061769857489977 0.840740580752819 0.423779988600824 1 1.12668862833155 11.0846896114073 0.061769857489977 0.0414870807307903
AT4G33950_at 7.99980157334406 7.91153440742255 7.75512223735278 7.71071888016401 8.71797445010475 8.2722976069567 8.24079115326015 8.20093349325991 7.3827002173092 7.37430613119783 7.61022943523702 7.53206977854448 7.55429743510231 7.49070451835931 7.02403406363338 7.26787639729486 7.5639189979538 7.26145757869718 7.12073601082725 0.191708816408545 0.187122109223192 0.200707523762223 0.193660194009293 0.185231764171550 0.197146269728577 0.195802339959101 0.188465319213692 0.196410188768940 0.188819562369199 0.185447779388378 0.185231764171550 0.192171049662330 0.191384330026137 0.190303566719101 0.185231764171550 0.191801399098571 0.198583583475873 0.188196977682519 4 4|0 +|/ 16273506 16274418 16274025.5 16272258 16274815 + gene protein_coding_gene FALSE TRUE AT4G33950.1 OST1 (OPEN STOMATA 1); kinase/ protein kinase Encodes calcium-independent ABA-activated protein kinase, a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Mutations disrupted ABA induction of stomatal closure as well as ABA inhibition of light-induced stomatal opening. However, regulation of stomatal opening/closing by light or CO(2) is not affected in these mutants. May act in the interval between ABA perception and reactive oxygen species production in the ABA signalling network. similar to SNRK2-3/SNRK2.3/SRK2I (SNF1-RELATED PROTEIN KINASE 2-3, SNF1-RELATED PROTEIN KINASE 2.3), kinase/ protein kinase [Arabidopsis thaliana] (TAIR:AT5G66880.1); similar to Os12g0586100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067155.1); similar to serine/threonine protein kinase SAPK8-like protein [Solanum tuberosum] (GB:ABA40436.1); similar to Os03g0610900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050653.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0731279379904617 0.840327081240928 0.423999106984223 1 1.12635387336486 15.4539738812569 0.0731279379904617 0.0792996882106623
AT2G37410_at 8.78735833379454 9.02015149850796 8.93667252110827 8.93989547486846 9.51333876154633 9.3259476351915 8.71121733486713 9.01036774036156 8.54086075577397 8.35204124144063 7.97242409855608 8.16352159098337 8.4843061013089 8.38384854928614 8.14864162481269 8.39104145882442 8.28950579476476 8.40126063202705 8.40959480106826 0.148019172259857 0.149209824555577 0.146439655979130 0.144193190818986 0.143361293636208 0.147089417723184 0.142465658900506 0.149113932473410 0.149135182994821 0.140507627369433 0.141780108852483 0.151637963634505 0.143972497459742 0.148769421093489 0.145215821964520 0.144587072873529 0.140064603769280 0.143735194981878 0.146186573697782 2 2 - 15705203 15705735 15705555.182 15704913 15706354 - gene protein_coding_gene FALSE TRUE AT2G37410.1|AT2G37410.2 ATTIM17-2 (Arabidopsis thaliana translocase inner membrane subunit 17-2); protein translocase Mitochondrial inner membrane translocase. Together with AtTIM17-1, TIM17-2 has a long C-terminal extension not present in other TIMs. The extension is located in the outer membrane and so TIM17-2 links the inner and outer mitochondrial membranes. The C-terminal region is essential for protein import into mitochondria via the general import pathway but is not necessary for import via the carrier pathway. Identical to Mitochondrial import inner membrane translocase subunit Tim17 (TIM17) [Arabidopsis Thaliana] (GB:Q9SP35;GB:Q9ZUS5); similar to ATTIM17-1 (Arabidopsis thaliana translocase inner membrane subunit 17-1), protein translocase [Arabidopsis thaliana] (TAIR:AT1G20350.1); similar to unknown [Solanum tuberosum] (GB:ABA81866.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Collagen triple helix repeat; (InterPro:IPR008160) 0.0709215015943228 0.840000011773915 0.42417248072369 1 1.12608918653205 17.3873608279047 0.0709215015943228 0.073177662831469
AT4G14400_at 10.9738803675128 11.4643525915125 11.3226781678595 11.2609826874265 11.1196694016689 10.6236889400865 10.3287029731519 10.2633160447076 11.0143233582510 9.7763624110944 10.0340893659629 10.5618620399455 10.0017821633172 10.7482944477653 9.06623217895335 10.0621921389876 10.1658851071652 10.8781359320323 10.2085105283878 0.133796319401441 0.129467368268863 0.136866563206506 0.135348487075394 0.134559295769857 0.136006282952431 0.128356853054516 0.133231906767609 0.136248559806043 0.137209860496787 0.129616336397055 0.132252041959609 0.135153460010178 0.128716978613127 0.143831387292661 0.130198646660265 0.135529882654402 0.131323601755826 0.131336011832165 4 4 + 8297804 8298331 8298058.727 8294448 8298598 + gene protein_coding_gene FALSE TRUE AT4G14400.1|AT4G14400.2|AT4G14400.3 ACD6 (ACCELERATED CELL DEATH 6); protein binding encodes a novel protein with putative ankyrin and transmembrane regions. It is a member of one of the largest uncharacterized gene families in higher plants. The gene is involved in resistance to Pseudomonas syringae. similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14390.1); similar to protein binding [Arabidopsis thaliana] (TAIR:AT4G05040.3); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to Os11g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065908.1); similar to hypothetical protein LOC_Os11g08050 [Oryza sativa (japonica cultivar-group)] (GB:AAX95030.1); contains InterPro domain Ankyrin; (InterPro:IPR002110)|similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14390.1); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to Os11g0182900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065908.1); similar to hypothetical protein LOC_Os11g08050 [Oryza sativa (japonica cultivar-group)] (GB:AAX95030.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0904677721138103 0.83878216296114 0.424818473308310 1 1.12510437700193 21.1810961989127 0.0904677721138103 0.121710638532624
AT2G44650_at 9.19644195685538 9.54521549680163 8.59708622434794 8.66579006890937 9.41648576890746 8.88323136635248 8.87676956919822 9.23524822652402 9.21980485573761 9.28328291865147 9.49148230886044 9.79359944548115 9.10404707247044 9.41673789530227 9.72313395500118 9.48366488223356 8.52752233634113 9.05657614584156 9.05947585052182 0.143948275698779 0.142534521955955 0.148397953773117 0.149516670018303 0.151960560501487 0.147211246662923 0.146606823856090 0.148915450827144 0.145914666512449 0.142791304947538 0.143236057399208 0.147376049668048 0.137876975720279 0.145471904582204 0.14887212804266 0.145329845172502 0.160870509796963 0.151263409879350 0.137876975720279 2 2|0 -|/ 18426604 18427541 18427047.714 18426478 18428186 - gene protein_coding_gene FALSE TRUE AT2G44650.1 CHL-CPN10 (chloroplast chaperonin 10) Encodes a chloroplast-localized chaperonin 10 whose mRNA is expressed in leaves and stems but not roots. similar to chloroplast chaperonin 10, putative [Arabidopsis thaliana] (TAIR:AT3G60210.1); similar to chloroplast chaperonin 10 [Brassica rapa] (GB:ABK78693.1); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains InterPro domain GroES-like; (InterPro:IPR011032) -0.0928480791638329 -0.838244205865577 0.425104042972512 1 1.12466973965676 18.3080919414846 -0.0928480791638329 0.127078036118816
AT3G62940_at 8.46219354304475 8.59424763041135 8.47216784145162 8.47127850703232 8.89622586492946 8.45961361111983 8.65449028453683 8.93326642304734 8.60286749635961 8.45707938202681 8.48752196872005 8.50447292980344 8.56698560703692 8.35053841815022 8.50454640088315 8.38031427791803 8.12297761726954 8.30414941696061 8.3572485140408 0.160196671167550 0.163405943501482 0.165648168144123 0.16825489560241 0.161846781608931 0.165389061509471 0.169122119082511 0.163001862889469 0.165095859570780 0.170199505290563 0.162631589355177 0.155319233398761 0.158699169197885 0.167218332960855 0.162238384592922 0.155762683450911 0.167647679895157 0.169080507881595 0.164222704860099 3 3 - 23274093 23274498 23274298.636 23273925 23275684 - gene protein_coding_gene FALSE TRUE AT3G62940.1|AT3G62940.2 OTU-like cysteine protease family protein similar to SEC-C motif-containing protein / OTU-like cysteine protease family protein [Arabidopsis thaliana] (TAIR:AT5G67170.1); similar to Fgenesh protein 81 [Beta vulgaris] (GB:ABD83295.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) -0.0779690743382089 -0.838125383959594 0.425167136442443 1 1.12457377002499 17.0554788600643 -0.0779690743382089 0.0925131309314934
AT1G49710_at 8.15528020058448 7.85101745997454 8.03963653740022 7.74945548069662 8.11284801343647 7.64119326593833 7.41154062109845 6.96642492289868 6.75317817148011 6.74486290845277 6.51287486177211 6.83779915792521 6.7709625416025 7.02248193286012 6.16415987442981 6.92306132934356 7.02717634334403 6.87302869739977 7.09559592637582 0.206677296667826 0.203118661869562 0.207265272559761 0.206991427526037 0.20508607115463 0.204928562164591 0.209811996063558 0.203118661869562 0.217211470475685 0.207087190054737 0.203119321867679 0.204786179957105 0.203118661869562 0.212666503902605 0.210541350633081 0.203223978435253 0.207526802121579 0.203284377919507 0.203118661869562 1 1 - 18395290 18395973 18395585.636 18395006 18397596 - gene protein_coding_gene FALSE TRUE AT1G49710.1 FUT12 (fucosyltransferase 12); fucosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with core α1,3-fucosyltransferase activity. Identical to Putative fucosyltransferase-like protein (FucTB) (FucT2) (AtFUT12) (FUT12) [Arabidopsis Thaliana] (GB:Q9FX97); similar to FUT11 (Fucosyltransferase 11), 4-galactosyl-N-acetylglucosaminide 3-alpha-L-fucosyltransferase/ fucosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G19280.1); similar to Fuct c3 protein [Vigna radiata var. radiata] (GB:CAB52254.1); similar to alpha 1,3 fucosyltransferase [Populus alba x Populus tremula] (GB:CAI70373.1); similar to alpha 1,3 fucosyltransferase [Medicago sativa] (GB:AAL99371.1); contains InterPro domain Glycosyl transferase, family 10; (InterPro:IPR001503) 0.0958074733969705 0.837136732013377 0.425692354224941 1 1.12377570006445 14.5564189433056 0.0958074733969705 0.133753125314602
ATCG00540_at 11.7525220685024 12.3707591732217 12.1796443593425 12.0305870052772 12.0914702720664 11.983879495552 12.2622519627796 12.5455311980959 13.0886429110531 13.111477761961 13.5891646073973 13.7589028377001 13.2844969078581 13.5065942390209 13.2444981401859 13.5047113528944 12.9373731749681 13.0177941102994 12.8402663316167 0.082440744241903 0.080127438577078 0.0792766741692277 0.0820745848812154 0.0788068689569546 0.0823738060606591 0.0788959600133683 0.0846159764387546 0.0840442796058571 0.0799399557596547 0.0813467253996218 0.082550051569969 0.081258466084031 0.0818101319215155 0.0796263618479554 0.0809956838478874 0.0915009699587026 0.0820200095092606 0.0796777272021582 C C + 62062 62528 62307.091 61657 62619 + gene protein_coding_gene FALSE TRUE ATCG00540.1 Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2. Identical to Apocytochrome f precursor (petA) [Arabidopsis Thaliana] (GB:P56771); similar to Apocytochrome f precursor (GB:P36438); contains InterPro domain Cytochrome f; (InterPro:IPR002325); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054) 0.0903043844116165 0.836438747599954 0.426063426430681 1 1.12321273985239 25.3365328199384 0.0903043844116165 0.121909378668918
AT1G12850_at 7.65584059305905 7.92187092855806 7.04429401102040 7.47364566172135 8.07744016940794 6.99177393646968 7.8653442169839 7.89421472069563 8.02640429652608 7.03989666085271 7.91375454496565 8.06248421867825 7.54793070494055 7.96938156599505 7.84338892948919 7.52850591877348 6.74760167412534 7.5774719850515 7.36064756786808 0.181153708229124 0.180493742280628 0.198699866594308 0.189872592785616 0.180865826939208 0.197878853535041 0.181658333750389 0.177401613360843 0.19566246874166 0.188703838921770 0.172018852590997 0.175593363823277 0.184806356677396 0.176023994242780 0.173164501425918 0.172736728109854 0.203057668065642 0.176876124197066 0.176551756484972 1 1 - 4380021 4380505 4380242.182 4379705 4381610 - gene protein_coding_gene FALSE TRUE AT1G12850.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G26780.1); similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Overexpression vector pFC12850OE] (GB:ABK41845.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.132181867916281 -0.835338911115365 0.426648591112594 1 1.12232646205119 15.1777852553235 -0.132181867916281 0.207277277739472
AT3G58970_at 8.08836671497643 8.31806888617864 8.15808470943002 8.10227919066772 7.97677960694095 8.211574388273 7.91275080655495 8.0504587864411 8.2129417990125 7.65731786759586 7.86127111744016 7.67254553685746 7.6128280165249 7.72443355383493 7.39970534572083 8.04242276964719 8.03637857010533 7.7722536180179 7.88666607566903 0.167622622341121 0.167005213073423 0.169391001264949 0.163714135633363 0.169277463491144 0.178341510543831 0.170934228178433 0.165245274380887 0.180147863445611 0.177753217344316 0.173524534996899 0.164935102396332 0.177665559182107 0.165964465631732 0.166842846306452 0.175883869620269 0.163539173657129 0.178508295357989 0.168055022074449 3 3 - 21800656 21801108 21800865.273 21800309 21802336 - gene protein_coding_gene FALSE TRUE AT3G58970.1 magnesium transporter CorA-like family protein similar to magnesium transporter CorA-like family protein (MRS2-6) [Arabidopsis thaliana] (TAIR:AT4G28580.1); similar to Mg2+ transporter protein, CorA-like [Medicago truncatula] (GB:ABE89684.1); contains InterPro domain Mg2+ transporter protein, CorA-like; (InterPro:IPR002523) -0.0669886280585321 -0.835277466155233 0.426681299110026 1 1.12227697681269 15.9443979179050 -0.0669886280585321 0.062388407358135
AT1G77470_at 5.45360524733205 6.01114029564973 5.49284518494601 5.92805378210787 6.06118942099507 5.71999170433091 5.77708853573556 5.52474267346948 4.63774184288355 5.17231592920252 4.47762041875797 4.790236460184 5.33729663061631 4.87185592006752 4.65842997682474 5.29029711977133 5.5723354460879 5.11771327816115 4.96135198895058 0.223247148482536 0.227508532591099 0.226712970063804 0.213860704093906 0.220823523703715 0.217699048308117 0.227810047450003 0.217935529776505 0.218618287627198 0.214670915705242 0.220215699632222 0.219816264644382 0.218501232287994 0.217369578614530 0.226013053677672 0.216219405693181 0.228203608858106 0.218158479446162 0.222771339767678 1 1 - 29117095 29118191 29117725.545 29116842 29119329 - gene protein_coding_gene FALSE TRUE AT1G77470.1 replication factor C 36 kDA, putative similar to EMB1968 (EMBRYO DEFECTIVE 1968), ATPase [Arabidopsis thaliana] (TAIR:AT1G21690.1); similar to replication factor C 36kDa subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB16439.1); similar to Os02g0775200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048280.1); contains InterPro domain Replication factor C conserved region; (InterPro:IPR000862); contains InterPro domain DNA polymerase III clamp loader subunit, C-terminal; (InterPro:IPR008921); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Replication factor C; (InterPro:IPR013748); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0997728688391197 0.834883063062553 0.426891286599334 1 1.12195941330989 10.7152203105647 0.0997728688391197 0.142740850424334
AT3G42950_at 5.02239610348442 4.51597990801511 4.53713082735899 4.66441159442571 4.74743138804517 4.81236422956976 5.41412133454315 4.65369600745188 4.45107974656921 4.37716645660178 4.94472360836296 5.15292938764927 4.52764677531999 4.92337891854313 5.0416820918158 4.42774974765753 4.99192630904335 4.84120640267592 4.45883725226059 0.179721617867647 0.173762997837783 0.183598974969759 0.173762997837783 0.190795011692844 0.17773942578905 0.177607947691017 0.178123818442495 0.178367253310546 0.182771649234955 0.179129701110493 0.176060931129197 0.184755001286898 0.173762997837783 0.178603118919781 0.173901914162463 0.183523321413994 0.183995966482194 0.178976729319838 3 3|0 +|/ 15028141 15028690 15028439 15026128 15029059 + gene protein_coding_gene FALSE TRUE AT3G42950.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT1G19170.1); similar to Os09g0439400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063274.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE90955.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.108081879066282 0.834511839970703 0.427088997911806 1 1.12166062838465 9.43865803591712 0.108081879066282 0.160028384119068
AT1G67860_at 11.8692565043191 11.8197695477072 12.4583152130329 12.4511163692037 12.3899554106409 12.2386596356668 12.4208456512802 12.4490199696273 12.0801960132005 12.4170707813459 12.0988706593597 11.8980500482198 12.3184606396551 11.9159552217337 11.5051760546449 12.3541388489694 12.4142689310330 12.1801658304174 12.1419533559631 0.064245690193543 0.0630976814874744 0.0651253339857007 0.0691873387616146 0.0652101428566128 0.0653751104876038 0.0640698433513782 0.0626461598035123 0.0669421428157584 0.0619811250528018 0.064371129852392 0.0634092528675132 0.0629905014652387 0.0660391822665942 0.069174909661879 0.0619811250528018 0.0680071219111705 0.0632397678415843 0.0639145395940496 1 1 - 25448627 25448815 25448716.727 25448468 25448926 - gene protein_coding_gene FALSE TRUE AT1G67860.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67865.1) 0.058675567326766 0.833832706302923 0.427450864487305 1 1.12111430440272 24.4114718690634 0.058675567326766 0.0280033172614036
AT1G59910_at 6.60849600381577 6.73255978706405 6.18913215702885 6.25821563619839 6.28603237494683 6.75725718595843 5.83395831552188 6.55982288332393 6.71543973841106 6.70234147453919 7.33637359442983 6.84865298768288 6.85198275154767 6.74438775670688 6.71497305021793 6.81568044878985 6.14134622007549 6.51126571049569 7.25766339821382 0.195421628506430 0.180102842201809 0.18993668720248 0.188788695349233 0.184236041182221 0.195100640444057 0.190261228984775 0.189868741264846 0.192672827130224 0.179567329743899 0.194883107185964 0.182020112188417 0.182209381320972 0.189733156589976 0.184513811887342 0.187287519252046 0.191866045654109 0.182429678190685 0.182411073568903 1 1 - 22057839 22058291 22057990.273 22057616 22060717 - gene protein_coding_gene FALSE TRUE AT1G59910.1 formin homology 2 domain-containing protein / FH2 domain-containing protein similar to ATFH8 (FORMIN 8), actin binding / actin filament binding / profilin binding [Arabidopsis thaliana] (TAIR:AT1G70140.1); similar to Pyridoxal-dependent decarboxylase; Actin-binding FH2 [Medicago truncatula] (GB:ABE93173.1); similar to Os02g0739100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048066.1); contains InterPro domain Actin-binding FH2; (InterPro:IPR003104) -0.103640982146514 -0.83119799860959 0.428856735409331 1 1.11899835844580 13.2218831356729 -0.103640982146514 0.151765737799226
AT3G06610_at 7.36079094977872 7.50045660651233 7.53419090412053 7.56823367103438 7.56716681656633 7.35679552008595 7.93422948523981 7.88905901042053 7.46337248620666 7.13670615350695 7.18684421294801 7.65040206072278 7.23700103982846 7.08599327651424 7.84836640883947 7.36772427326092 7.43395298677146 6.75887690825796 7.24053837894956 0.15500289988525 0.157985668265187 0.160924833992448 0.165516426125260 0.160180962369192 0.164425148605845 0.156178985890689 0.170877456196445 0.165506716988250 0.156213719731083 0.157432818023170 0.154038023601698 0.162340271589683 0.165270467478672 0.159140101749745 0.154038023601698 0.160575566222304 0.165705486405873 0.161646159068267 3 3|0 +|/ 2060857 2061824 2061385.889 2060744 2062073 + gene protein_coding_gene FALSE TRUE AT3G06610.1 DNA-binding enhancer protein-related similar to MGC85228 protein [Xenopus laevis] (GB:AAH78471.1); similar to Os03g0832300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051800.1) -0.0617989060154298 -0.830785454879882 0.429077155941589 1 1.11866755058640 14.8895407798601 -0.0617989060154298 0.0447813376082099
AT4G35140_at 4.70856369365663 5.42513341180947 4.99934499671737 5.14168649033074 4.93004397574073 4.90634583077671 5.66333923537585 5.06101713142395 4.89331391054287 5.01810271024184 4.78680839051304 4.55787796260945 4.79158527231952 5.20029208747607 4.69663664884339 5.12309355190253 5.43187589757222 4.86130810070824 4.87839285864731 0.270096573891787 0.265505314777948 0.277874929393085 0.265505314777948 0.273489461752601 0.266980989645639 0.27489509880486 0.275656552061635 0.278727779200675 0.278317701448909 0.270946954736104 0.265505314777948 0.268275062083323 0.269545727796497 0.27759131373753 0.267292054543229 0.268726877627423 0.277714035613031 0.265505314777948 4 4 - 16724920 16725115 16725013.125 16723726 16726641 - gene protein_coding_gene FALSE TRUE AT4G35140.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G38480.1); similar to putative WD-40 repeat protein [Oryza sativa (japonica cultivar-group)] (GB:AAM34535.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) -0.109454899413021 -0.83042746810604 0.429268490220221 1 1.11838060202902 10.0349949617975 -0.109454899413021 0.163908145474878
AT2G01220_at 7.055230272826 6.83901358929686 7.08097796727238 6.59317537020407 7.35335111639224 6.95481187962046 7.20896002798484 7.09004386235717 6.61766315135151 6.80618191927276 7.13282989132313 7.05066997157164 6.94924551677935 7.25921091715546 6.88642298511532 7.4540173859952 6.70119301076893 6.64721389701308 6.92323000818607 0.144943499848833 0.139293638720492 0.143495436646255 0.144766033788054 0.140924433080704 0.147349116151022 0.144518649742631 0.143305326252992 0.152502008703134 0.142660965752315 0.145066454159192 0.141717456820181 0.137297370965945 0.145162440520905 0.143434037534314 0.140816492867901 0.149955563457679 0.140771280371597 0.152203210290891 2 0|2 /|+ 123498 126141 124985.421 123275 126465 + gene protein_coding_gene FALSE TRUE AT2G01220.1|AT2G01220.2 nucleotidyltransferase similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G27610.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82489.1); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.0875046163089421 0.830342951514143 0.429313670644327 1 1.11831287187323 13.9181749140286 0.0875046163089421 0.117074467318829
AT1G55090_at 6.9505227140485 7.33696241891428 7.4902061142892 7.30115562112162 7.61685188974267 7.33398479721354 7.5266492730581 7.1686825160044 6.62731322967023 6.89658826629009 6.70460780559651 7.02590900491474 6.88588250816387 6.46907753583215 6.73764676411235 6.81739983264978 7.1713606518104 6.9506375710023 7.07881557406165 0.191095903565382 0.180405975987034 0.183267698138143 0.193190758221284 0.187964624500177 0.180773933021356 0.178443515938382 0.187287679434018 0.187826172468567 0.178410491163627 0.182005323619454 0.182477394064859 0.180018580205165 0.179782630665273 0.180763555861772 0.181115883431403 0.213561891733453 0.190092762860056 0.177577909590207 1 1|0 +|/ 20561091 20561823 20561366.5 20558019 20562194 + gene protein_coding_gene FALSE TRUE AT1G55090.1 carbon-nitrogen hydrolase family protein similar to Predicted NAD synthase, contains CN hydrolase domain (ISS) [Ostreococcus tauri] (GB:CAL55348.1); similar to unnamed protein product [Kluyveromyces lactis] (GB:XP_453643.1); similar to putative NAD synthetase [Oryza sativa (japonica cultivar-group)] (GB:BAC07390.1); contains InterPro domain Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; (InterPro:IPR003010); contains InterPro domain NAD+ synthase; (InterPro:IPR003694) 0.083794113835856 0.830231442846768 0.429373285363848 1 1.11822351956884 14.1970707010162 0.083794113835856 0.108519173673479
AT1G01630_at 8.65167724505396 8.71550626493694 9.12546395765071 8.96808767829058 9.05722383784451 8.94100598230507 9.24935094553542 9.14411185118895 9.53912141528116 9.23281746527315 9.64778403352108 9.69239130246998 9.38963467298078 9.21345095559594 9.44264475026283 8.94167494004754 8.78970479734636 9.204893128129 8.98336990321829 0.123403770158954 0.118690566082739 0.127795032091596 0.132807094849341 0.119492102320598 0.128018146164822 0.131161774982053 0.126914169055988 0.128154824797929 0.123586583166524 0.121435333416800 0.122815675127100 0.122659544895570 0.134719446295590 0.124400548828510 0.123761541482201 0.138005330645155 0.124886318537818 0.123214848363731 1 1|0 +|/ 229460 230638 230078.8 229013 230917 + gene protein_coding_gene FALSE TRUE AT1G01630.1 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative similar to SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] (TAIR:AT1G14820.3); similar to Cellular retinaldehyde binding/alpha-tocopherol transport; Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE80207.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273) 0.0606432576486151 0.829857545771569 0.429573219726594 1 1.11792398788189 18.2525744289183 0.0606432576486151 0.0399989544495303
AT1G04910_at 7.23457110961297 7.43944205421929 7.17954529698183 7.30549280800602 7.43413557105641 6.96192769319588 7.34155191182454 7.36102675884995 7.091548120422 7.1108188258865 7.48832520377788 7.05183318277875 6.88389433778542 7.04709042798723 6.88074504446522 7.0008136093491 6.62301403469537 7.18008840660777 6.94551305022819 0.203984364781003 0.188393252128480 0.194896698239619 0.194643134610039 0.185129825952146 0.186022907108647 0.190001696172366 0.195827744378208 0.200866245509219 0.187147530131024 0.184653197778827 0.187822784610480 0.195373513809081 0.182038190357216 0.193580683637925 0.182858245649201 0.216669122466499 0.186349099599537 0.183246494811149 1 1 - 1388113 1388636 1388396.636 1387870 1391186 - gene protein_coding_gene FALSE TRUE AT1G04910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22460.1); similar to Plant protein family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97941.2); similar to Os11g0481200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067896.1); similar to Plant protein family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93715.2); contains InterPro domain Protein of unknown function DUF246, plant; (InterPro:IPR004348) -0.0768452087823519 -0.829187236317487 0.429931815624916 1 1.11738728125344 14.3165960820232 -0.0768452087823519 0.0917670274583333
AT2G47160_at 5.34132543456513 5.83412844202955 5.29550996385466 5.69375751153033 6.00292628580326 5.67614059521254 6.46060239151935 7.13581764677543 5.80777721487894 6.37696970209906 7.80086957945446 5.88164409544718 6.5280154061314 6.92407642020138 5.85369500494563 5.80736123824456 4.99629928377423 6.83166961735788 5.8948424267781 0.269483306741173 0.2569930960877 0.288042425630532 0.283315366785317 0.2569930960877 0.27338132093797 0.264979789569630 0.257009418594349 0.288794829118797 0.269278199215949 0.274622791618767 0.271829318025977 0.2569930960877 0.257078327054977 0.2569930960877 0.2569930960877 0.278847349862304 0.268908174029021 0.262015737695121 2 2|0 -|/ 19365045 19365680 19365352.667 19364548 19368217 - gene protein_coding_gene FALSE TRUE AT2G47160.1|AT2G47160.2 BOR1 (REQUIRES HIGH BORON 1); anion exchanger|BOR1 (REQUIRES HIGH BORON 1) Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation. Identical to Boron transporter 1 (BOR1) [Arabidopsis Thaliana] (GB:Q8VYR7;GB:Q9SHX0); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G62270.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G06450.1); similar to HCO3-transporter [Medicago truncatula] (GB:ABE78978.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531)|similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT1G15460.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G62270.1); similar to anion exchange family protein [Arabidopsis thaliana] (TAIR:AT3G06450.1); similar to HCO3-transporter [Medicago truncatula] (GB:ABE78978.1); similar to Boron transporter 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22050.1); similar to boron transporter [Oryza sativa (japonica cultivar-group)] (GB:AAQ02664.1); contains InterPro domain HCO3- transporter, eukaryote; (InterPro:IPR003020); contains InterPro domain HCO3-transporter; (InterPro:IPR011531) -0.112230420089807 -0.828967686465849 0.430049313192126 1 1.11721157007663 12.1072678398846 -0.112230420089807 0.169925267595343
AT3G05530_at 10.1143588776916 10.1090142624570 10.2958763032684 10.3129028460413 10.4502252733519 10.2720737301658 9.94526225909867 10.0289483952451 9.91065779996728 10.0273627108581 9.92247440874793 9.76653214890852 9.8561921284825 9.80588958313357 9.72232364127085 9.85781581322302 9.62813678925748 9.90656816476177 9.98043685598372 0.0855414018914698 0.0819375137322888 0.0860039766601904 0.0852324147195742 0.0895034754505107 0.0905765050382387 0.0895746815705754 0.0879984834545722 0.0977053307998065 0.0895319402140863 0.0895917692311445 0.0819375137322888 0.0872775922615632 0.0865038711525875 0.0881323401716484 0.0819375137322888 0.0944476465937902 0.0904775735260687 0.0873966218081664 3 3|0 +|/ 1604873 1605947 1605454.222 1603406 1606237 + gene protein_coding_gene FALSE TRUE AT3G05530.1 RPT5A (regulatory particle triple-A 5A); ATPase/ calmodulin binding a proteasome non-ATPase regulatory subunit similar to RPT5B (26S PROTEASOME AAA-ATPASE SUBUNIT RPT5B), ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G09100.1); similar to AAA ATPase; 26S proteasome subunit P45 [Medicago truncatula] (GB:ABE80601.1); similar to 26S protease regulatory subunit 6A homolog (TAT-binding protein homolog 1) (TBP-1) (GB:O23894); similar to Tat binding protein like protein [Brassica rapa] (GB:BAB21595.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0593980260186371 0.828871029901578 0.430101048371788 1 1.11713422580884 20.0816130969114 0.0593980260186371 0.0342017532987878
AT2G46735_at 5.22380122747405 5.59997355350915 5.57866638684939 5.40407869669671 5.87010903586801 5.88581477457028 6.62624347230481 6.63999928805647 6.10084069377642 5.99596629029887 6.54036966318946 6.40260709766317 6.11157526679979 6.54932781260891 6.43828409095577 6.68629620531828 6.67243389985632 6.27942529452155 5.85262856032421 0.183391299354766 0.180567207213229 0.183241330080887 0.189359832841721 0.176029709379606 0.189492819355351 0.181777207102795 0.194118980820165 0.182881014808320 0.179815958819071 0.188249389779869 0.183188806900136 0.187787958227223 0.178744124196310 0.177611850585736 0.179023927463703 0.184513641767145 0.184530172633687 0.176855203180567 2 2 + 19211565 19211893 19211727.364 19211255 19212182 + gene protein_coding_gene FALSE TRUE AT2G46735.1 unknown protein 0.0695287865288157 0.828817258411592 0.430129831280920 1 1.11709120131215 12.0751783533314 0.0695287865288157 0.0718588259140587
AT4G32390_at 8.0312225895452 8.33149781780025 7.75536945552699 8.14906924640982 7.97665440165043 7.56108279640462 8.54076669996234 8.66558794480526 7.56151765810011 7.13416538833209 7.7187442353721 7.92890810441915 7.4694963386414 7.90095530007634 7.9782014282678 7.38491867394436 7.09529085858937 7.61747095517306 7.13467575693305 0.146020168621349 0.150693383986343 0.161390560610463 0.151876148812316 0.145533963291985 0.173849967347634 0.147827322419794 0.148993366446142 0.160798908904288 0.153046196935151 0.148351669974175 0.151172149308951 0.149792687293678 0.146554506600255 0.148476838115572 0.148015298123481 0.170621876934712 0.146454792218273 0.153214699507575 4 4 + 15637053 15637427 15637283.455 15636556 15637608 + gene protein_coding_gene FALSE TRUE AT4G32390.1 phosphate translocator-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT2G25520.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE88491.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.0858814095041311 -0.827923423928469 0.430608479120395 1 1.11637635524948 15.5831736213125 -0.0858814095041311 0.113933181982981
AT1G06900_at 6.78415336668378 6.64103989939084 6.36188990285693 6.30561367319618 6.9013216977282 6.6548644316146 7.11787708131668 6.57678259189713 6.41497606906676 7.05102727898552 6.88855050493757 7.34788202278531 6.6238521675637 6.79904945394634 7.183340228754 6.90319779506264 6.95789868278751 6.76946015216254 7.15901430591303 0.187862952176706 0.183274873719855 0.189819024836431 0.192626047725507 0.187411140614940 0.185738899201313 0.193038306817403 0.194549918072976 0.20636160639247 0.190606679718319 0.191821006599112 0.190677602820262 0.186751995657303 0.18627842145278 0.197329717376906 0.186933543036765 0.191351037765326 0.189490365466779 0.186165220353447 1 1|0 -|/ 2115185 2116007 2115602.4 2114930 2120744 - gene protein_coding_gene FALSE TRUE AT1G06900.1 metalloendopeptidase similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT2G41790.1); similar to PREDICTED: nardilysin (N-ar (GB:XP_001140801.1); similar to Os03g0336300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050040.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) -0.0824464085641399 -0.826218311275661 0.431522582654715 1 1.11501448300536 13.5725227109131 -0.0824464085641399 0.106280491384960
AT1G76940_at 6.6857100618921 6.5425214280927 6.14768717335793 5.91841197257695 6.77877030975568 5.74088645942711 5.84799143299847 6.42110256936094 6.096609507314 5.95000594604884 5.92485449879393 5.91522750743042 6.06522883630268 6.54028825757433 5.76833172614158 5.92058786115947 5.88376238375683 5.70368352138998 5.95928078218291 0.256064339810607 0.257216796228381 0.280802542108679 0.276608987802425 0.255543599857763 0.269704095982255 0.250751815484689 0.250185011004698 0.255250789711614 0.251239863263108 0.248496422354908 0.253305097409432 0.257693231621454 0.268329637176763 0.250391086942466 0.248496422354908 0.265525720925618 0.256684823077999 0.260177374461319 1 1 - 28907509 28908725 28908316.8 28907322 28909205 - gene protein_coding_gene FALSE TRUE AT1G76940.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT1G21312.1); similar to RNA-binding protein [Medicago truncatula] (GB:CAD48198.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.132306116043284 -0.825814277895723 0.431739378683736 1 1.11469212728224 12.2439906688914 -0.132306116043284 0.210439691512245
AT3G44440_at 4.84599133207955 4.51908722758352 4.8537629672467 5.11498786421395 4.53085735781494 4.96260991800622 4.35869715158037 4.81135290555163 5.42125019903984 5.2055775617141 5.62351999428631 5.36802932392434 4.934179133155 5.40385671522039 5.17190282190641 4.85840795594874 5.59406044987747 5.33014967319307 5.36816324138836 0.172709608325085 0.169078367071189 0.173057053259388 0.172471524185708 0.178195169225542 0.174730057742266 0.173853403825411 0.168606282022121 0.174861583453991 0.173988437529680 0.171825749281209 0.171955337545533 0.168616569749835 0.168502308105714 0.170120283317191 0.172440218010232 0.168502308105714 0.171841659097362 0.168764182828044 3 3|0 +|/ 16081981 16082188 16082052.3 16081969 16082243 + gene protein_coding_gene FALSE TRUE AT3G44440.1 unknown protein 0.092810981839943 0.824976828707169 0.432188975201374 1 1.11402439494998 10.0582568034195 0.092810981839943 0.130241570618749
AT2G34585_at 9.51241652260036 9.57342693588048 9.22042858579368 9.45974446155554 9.3718659492762 9.40251661422667 9.10793063921324 9.57090907012623 9.63784184458966 9.46944310989127 9.90886333832811 9.9108074447316 9.87869544420817 9.91220899540853 9.59381444270693 9.74680698142333 9.48468472269281 9.76417865988182 9.52835709664306 0.0786293676733638 0.078799980561234 0.0822264016336046 0.0766388475462732 0.077258876253893 0.076927239612361 0.0785856919074982 0.0816316304661048 0.0889091503887967 0.0777452765920914 0.08005087887919 0.0797624270121764 0.0767199376614176 0.0765110761286547 0.0876807664081803 0.0802213943338749 0.0829598301212442 0.0793368817703945 0.076706248676259 2 2 - 14575388 14575527 14575448.273 14575126 14575716 - gene protein_coding_gene FALSE TRUE AT2G34585.1 similar to Os07g0154300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058914.1) 0.0761307986946373 0.824849129948239 0.432257560362611 1 1.11392262553705 19.0625156076910 0.0761307986946373 0.0909620566963577
AT4G21110_at 9.30014263739123 9.82354606479854 9.7758495396629 9.63797725536234 9.8397562978211 9.87414351892913 9.12759646820176 9.72662286287578 9.5675013282253 9.37135122230222 9.3932695097969 9.26450413608218 9.37527904322018 9.50679801000818 9.232374489272 9.39339739386078 8.9767683436642 9.47931583042701 9.32518318562724 0.117922197650486 0.115405672416176 0.114311372732931 0.113549175544081 0.123717467317139 0.117020181223774 0.120226066728029 0.121252485046646 0.115412954806833 0.113119578638848 0.112900348509353 0.112291082866062 0.112216418250035 0.118469819541438 0.120040020013331 0.117213826481868 0.124619294606516 0.118396921230247 0.117223158702520 4 4 + 11267701 11268747 11268260.818 11267196 11268968 + gene protein_coding_gene FALSE TRUE AT4G21110.1 G10 family protein similar to Os01g0857700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044856.1); similar to G10 protein; Cytochrome c and b562 [Medicago truncatula] (GB:ABE90449.1); contains InterPro domain G10 protein; (InterPro:IPR001748) 0.0969113718917722 0.822254191834149 0.433652884095505 1 1.11185746058784 19.0127336255935 0.0969113718917722 0.139840056483386
AT1G78040_at 11.9290518306330 12.1750764003089 11.4321662656949 11.5150622596444 11.8748558247650 11.7595491447585 12.1263595141959 12.4914368277122 12.4356376400677 12.3227556850760 13.0380013208174 13.0588595202351 12.7994125100837 12.7496088125817 12.9762730851091 12.5656017727539 12.1745234000206 12.8504511102819 12.3969501883203 0.0813496887972274 0.0786478511269034 0.0826322215692159 0.0824510211612998 0.08095007911081 0.0886374543605124 0.0818697706499222 0.0786478511269034 0.0879664090627811 0.0831606335299187 0.0821597262856087 0.0800303002648313 0.0801949908107221 0.0821589249224061 0.0820791481574104 0.0786478511269034 0.0894012440025173 0.083262163630022 0.0832230508233691 1 1|0 +|/ 29350923 29351655 29351385.9 29350732 29352001 + gene protein_coding_gene FALSE TRUE AT1G78040.1|AT1G78040.2 pollen Ole e 1 allergen and extensin family protein similar to SAH7 [Arabidopsis thaliana] (TAIR:AT4G08685.1); similar to pollen-specific protein [Vitis pseudoreticulata] (GB:ABC86745.1); contains InterPro domain Pollen Ole e 1 allergen and extensin; (InterPro:IPR006041) -0.0717979162497047 -0.821955195521126 0.433813855709862 1 1.11161985783333 24.4937977314508 -0.0717979162497047 0.0800510004255788
AT3G02780_at 8.33668771101235 8.92957226234724 8.70817557029672 8.77453855624789 8.79383261489498 8.45579403830247 9.11504757021047 9.38794360188135 8.6587838835329 8.89015054528609 8.95318078164718 9.02525381840983 8.71608738366638 8.75244093061223 8.90278461460871 9.11535712633735 8.72424891593517 8.7256839564442 8.81316456516309 0.147662344877217 0.136357118137134 0.145571773403841 0.146079344406808 0.139468767552810 0.150812289886820 0.139091823290343 0.136841442795005 0.139504155624149 0.135179875821612 0.140990652915129 0.136323934362873 0.142690024941987 0.137474465123238 0.139149789637784 0.139110430922363 0.149837543139923 0.146868523566985 0.139531123758385 3 3|0 -|/ 602587 603592 602991.4 602440 604691 - gene protein_coding_gene FALSE TRUE AT3G02780.1 IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2); isopentenyl-diphosphate delta-isomerase Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. Identical to Isopentenyl-diphosphate Delta-isomerase II (EC 5.3.3.2) (IPP isomerase II) (Isopentenyl pyrophosphate isomerase II) (IPP2) [Arabidopsis Thaliana] (GB:Q42553); similar to IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT5G16440.1); similar to isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Brassica oleracea var. botrytis] (GB:AAF36996.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Isopentenyl-diphosphate delta-isomerase, type 1; (InterPro:IPR011876); contains InterPro domain Isopentenyl-diphosphate delta-isomerase; (InterPro:IPR002667) -0.0911071158985304 -0.819943738095317 0.434897835620765 1 1.11002330741284 17.6385720017917 -0.0911071158985304 0.127716037310589
AT2G32900_at 5.94927690091561 5.55200151214961 5.08939462642964 5.13382444467623 5.7691637863403 5.00635257624319 5.34933662930744 5.36918329095853 4.64179636398186 4.69600827383353 5.01519841044819 5.3104371939455 4.51625142248835 5.49250559514368 4.64381267709735 5.06824438151189 4.80343826130114 4.79158050259317 5.21654438529543 0.206769150748894 0.206857624140160 0.212273154105730 0.206199285338572 0.20609807479717 0.218987616605502 0.211035082371446 0.218219100031761 0.219816912470166 0.207442852697175 0.209174191570321 0.203834470129558 0.204401077560062 0.217789062313338 0.215749237532316 0.203834470129558 0.219394172062946 0.205542982573557 0.208681864508360 2 2|0 +|/ 13963190 13964253 13963792.9 13960808 13964825 + gene protein_coding_gene FALSE TRUE AT2G32900.1 ATZW10 homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome segregation Identical to Centromere/kinetochore protein zw10 homolog (ZW10) [Arabidopsis Thaliana] (GB:O48626;GB:O48775); similar to Centromere/kinetochore protein zw10, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94216.2); similar to Os11g0545700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068060.1); contains InterPro domain Centromerekinetochore Zw10; (InterPro:IPR009361) -0.100765921857286 -0.818345725453575 0.435760330550494 1 1.10875726751988 10.3056333358458 -0.100765921857286 0.149075978760070
AT3G56650_at 9.01431662840965 8.90686505515145 8.77703156542995 8.46993349640524 9.41761062868188 8.82045667590746 9.6246448678104 9.15584600415992 9.37815109255554 9.26202924419839 9.6542869765561 9.43559906967848 9.14129193309768 9.33528064527512 9.69704408127152 9.2179114749783 9.32285807665677 8.99915271555063 9.08549458752018 0.147002160722264 0.143149751292176 0.149384604262332 0.153955264874948 0.141855133804066 0.154076813109417 0.138772063288197 0.139786630866524 0.151183576646022 0.140499948535473 0.141832568896203 0.140672068628983 0.139525474803084 0.144681837961914 0.144866053050385 0.146635773140339 0.149050522619152 0.145785393899535 0.141060053472961 3 3|0 +|/ 20995981 20996795 20996412.9 20995731 20997110 + gene protein_coding_gene FALSE TRUE AT3G56650.1 thylakoid lumenal 20 kDa protein similar to thylakoid lumenal 29.8 kDa protein [Arabidopsis thaliana] (TAIR:AT1G77090.1); similar to Os12g0190200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066340.1); similar to Os01g0805300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044559.1); similar to thylakoid lumenal 29.8 kDa protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96032.2) -0.0978117835341752 -0.817708176625173 0.436104761075068 1 1.10825274436807 18.3194979967734 -0.0978117835341752 0.142937315518640
AT2G35520_at 6.23052789091458 6.46374340181839 5.64551043574851 6.16240617669241 6.38647456093353 5.29847751622923 6.27540835146586 6.3351406914347 5.17121051095871 4.79950422768314 5.50005532526295 6.05954924545172 5.87175492180814 6.05899233036699 5.72488339421103 5.35432466306232 4.77031127789649 5.84022145972438 4.82035863312643 0.311814211611932 0.290431172883458 0.307369523762691 0.314226344268857 0.293740280698491 0.297827002567657 0.30063568119741 0.295941184048733 0.289463766830837 0.287671379541258 0.289784603136989 0.287671379541258 0.290009483491880 0.287671379541258 0.303483612535587 0.287671379541258 0.304605643139175 0.300676438312596 0.287671379541258 2 2|0 +|/ 14928719 14929698 14929220.333 14928571 14929924 + gene protein_coding_gene FALSE TRUE AT2G35520.1|AT2G35520.2 defender against cell death 2 (DAD2) Identical to Defender against cell death 2 (DAD-2) (AtDAD2) (DAD2) [Arabidopsis Thaliana] (GB:O22622;GB:Q94A89;GB:Q9SLH6); similar to ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) [Arabidopsis thaliana] (TAIR:AT1G32210.1); similar to DAD1 [Petunia x hybrida] (GB:AAO73434.1); contains InterPro domain Defender against death DAD protein; (InterPro:IPR003038) 0.132082937563056 0.817602005756002 0.436162137100011 1 1.10816875841971 11.3886458120609 0.132082937563056 0.212573984286443
ATCG00180_at 10.7999230564374 11.5435671525960 11.0569790731075 10.9999463075617 11.0175696077299 10.3056067762719 11.6253155652899 11.4556368547880 11.5725939543987 11.9889380355887 11.9820755278015 12.4462576485187 11.9626021287663 12.0012088543478 12.0190239228090 12.0827640974854 12.1333932960229 11.2587398081764 11.5577542551545 0.092848767084298 0.089632103195425 0.0949149283644975 0.094315814832611 0.0922946814040429 0.0954542781611686 0.0902307208916821 0.089632103195425 0.102433939603704 0.089632103195425 0.093006616323701 0.089632103195425 0.089632103195425 0.0943892009364185 0.0900543323831392 0.0917673319919187 0.0917577696298637 0.0956107948328556 0.0925732850655185 C C - 20423 20784 20608.455 20251 23084 - gene protein_coding_gene FALSE TRUE ATCG00180.1 RNA polymerase beta' subunit-1 Identical to DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) (rpoC1) [Arabidopsis Thaliana] (GB:P56763); similar to NRPB1 (RNA POLYMERASE II LARGE SUBUNIT), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT4G35800.1); similar to RNA polymerase beta [Vitis vinifera] (GB:YP_567067.1); similar to RNA polymerase beta I subunit [Cucumis sativus] (GB:AAZ94642.1); similar to DNA-directed RNA polymerase beta' chain (PEP) (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit) (GB:P46819); contains InterPro domain RNA polymerase, alpha subunit; (InterPro:IPR000722); contains InterPro domain RNA polymerase Rpb1, domain 1; (InterPro:IPR007080); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase I subunit A, N-terminal; (InterPro:IPR006592) -0.115877901999847 -0.816289828255263 0.436871679910314 1 1.10713152569495 22.9466615036586 -0.115877901999847 0.180835186149799
AT2G45160_at 7.64112146795379 8.06309572438081 7.4097506700059 7.29101324312324 8.05009250927797 7.73658981541332 7.4711456058745 7.65590535056228 8.05976064831608 7.42309071106891 7.82423083154485 8.17482991660576 7.6408086069919 7.54647646131687 7.06932321228138 7.91800912875205 6.59120376153903 7.34467010771222 7.27030322837201 0.143947126015115 0.143837722444839 0.145967485021620 0.138464243123888 0.141799175709713 0.140083183732868 0.138644690193259 0.136262962103009 0.149935814760057 0.145623354754114 0.140209615632809 0.139643278016477 0.146770553938219 0.141497646969896 0.140649926544669 0.138510719326068 0.159478134632857 0.140938748843034 0.141811598219581 2 2 - 18625228 18625692 18625502.182 18624937 18627225 - gene protein_coding_gene FALSE TRUE AT2G45160.1 scarecrow transcription factor family protein similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT3G60630.1); similar to GRAS transcription factor [Medicago truncatula] (GB:ABE85338.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.078323168490197 -0.816242615168294 0.436897224464613 1 1.10709423149631 15.2138787312883 -0.078323168490197 0.0985927142364303
AT4G25650_at 11.1711654226034 11.0890405327406 11.1911527933941 11.0641165940819 11.1263104475335 11.0283617240400 11.1264960082700 11.0932280548745 11.0485894704477 11.3538628900472 11.3972153898507 11.2899612273110 11.2403901455718 11.2408430019996 11.2358411790944 11.5180208430391 11.2576114954060 11.3129031562971 11.1315887806878 0.0652896148026534 0.0637036583611119 0.0653008412998648 0.063866076394834 0.0669408585058116 0.0665330814871393 0.0691418807573646 0.0631703153739026 0.07798109944975 0.0653354100156939 0.0665861392328151 0.063482766520865 0.0654607399982853 0.0684824351804162 0.0645361269911084 0.064024516722076 0.0676529934879612 0.0714920963343492 0.0659222849284477 4 4|0 -|/ 13081045 13081772 13081346.5 13080910 13083206 - gene protein_coding_gene FALSE TRUE AT4G25650.1|AT4G25650.2 ACD1-LIKE; electron carrier Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. similar to ACD1 (ACCELERATED CELL DEATH 1, PHEOPHORBIDE A OXYGENASE) [Arabidopsis thaliana] (TAIR:AT3G44880.1); similar to Rieske [2Fe-2S] re (GB:ABE79300.1); similar to Rieske [2Fe-2S] re (GB:ABE79303.1); similar to Rieske [2Fe-2S] re (GB:ABE79298.1); contains InterPro domain Pheophorbide a oxygenase; (InterPro:IPR013626); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) 0.0580437381169543 0.816203347153263 0.436918471129772 1 1.10706321459334 22.3560399564666 0.0580437381169543 0.0317136081719051
AT1G64190_at 9.17683993643788 9.24127915640246 9.05793340063824 9.22421870443772 8.93479560513693 9.00912042315104 9.27342307281986 9.47039466696137 9.23196856040561 9.1182492278664 9.33779463169217 9.40379323045301 9.12504870008416 9.30939746066329 9.24191305494553 9.26254671190436 8.8486901171785 9.12483442362596 8.93666947847375 0.0822251025588658 0.0791396891676133 0.0826281980257367 0.0781902982135233 0.0792047514456243 0.0823405980564421 0.0853191632156396 0.0787883927163806 0.0931539510115027 0.0840064889544039 0.0805624768301062 0.077613680852828 0.0858159934504208 0.0788728057257203 0.0795644456508296 0.079251239662518 0.0944986669532198 0.081582330258323 0.0826328067499843 1 1 - 23829216 23829703 23829414.636 23828991 23830799 - gene protein_coding_gene FALSE TRUE AT1G64190.1 6-phosphogluconate dehydrogenase family protein similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT5G41670.2); similar to 6-phosphogluconate dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT3G02360.1); similar to cytosolic 6-phosphogluconate dehydrogenase [Spinacia oleracea] (GB:AAK51690.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96861.1); similar to plastidic 6-phosphogluconate dehydrogenase [Spinacia oleracea] (GB:AAK49897.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal; (InterPro:IPR006114); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal extension; (InterPro:IPR012284); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain 6-phosphogluconate dehydrogenase, decarboxylating; (InterPro:IPR006113); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal core; (InterPro:IPR012283) -0.0614219862056444 -0.816136585218053 0.436954595495143 1 1.10701048376265 18.324691310865 -0.0614219862056444 0.0477471593889279
AT1G74320_at 6.70651767803048 6.9695197269576 6.18885608647547 6.56067283059944 7.21076201492251 7.08264697366955 6.87916251171618 5.96155058122699 6.19428495350041 6.32870628920516 5.8953777361753 6.29987907288551 6.41471891174208 5.66418177242272 5.89775453069147 6.31458968585304 5.89840937682779 5.75554280986709 6.61271680964777 0.201040722810360 0.197960504329461 0.202623409903262 0.198279377146944 0.202069428456735 0.210340405598272 0.194648651369637 0.210629148411472 0.218815259229145 0.199502977643533 0.194648651369637 0.199380802773461 0.200047722565298 0.196804224523606 0.202593884074104 0.197680844235844 0.208398287025465 0.198567413949165 0.194648651369637 1 1|0 +|/ 27945464 27946538 27945995.5 27944334 27946865 + gene protein_coding_gene FALSE TRUE AT1G74320.1 choline kinase, putative encodes a choline kinase, whose expression is induced by high salt and mannitol. similar to choline kinase, putative [Arabidopsis thaliana] (TAIR:AT4G09760.1); similar to ATCK1 (CHOLINE KINASE) [Arabidopsis thaliana] (TAIR:AT1G71697.1); similar to GmCK3p (GB:AAC49376.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Choline kinase, N-terminal; (InterPro:IPR007521); contains InterPro domain Choline/ethanolamine kinase; (InterPro:IPR002573) -0.114732880896191 -0.815793146168076 0.437140459954129 1 1.10673928149007 12.8930240943711 -0.114732880896191 0.178661058939161
AT1G79550_at 10.8511859214469 10.8258212120404 11.0699642421741 11.0639337680538 10.6041028194936 10.4951361963551 11.2040899542791 11.1612032684388 10.5280468412707 10.7226980639134 10.9142376408853 11.0388381941924 10.7231824387752 10.8987832206572 10.9844992256705 10.8577743830818 10.9227892660882 10.8582362115667 10.5034479862914 0.0954483738936948 0.0955961852244495 0.0981407622428987 0.102495505472054 0.0936208139544636 0.103160706218845 0.0985146386281685 0.100251752476284 0.108245081357340 0.101899253224073 0.0953844787961452 0.0936208139544636 0.0945031934620776 0.0936208139544636 0.0956158110717145 0.0962882594545205 0.0972745677843115 0.0975680669675362 0.101956857881842 1 1 - 29929264 29930061 29929673.636 29928916 29931475 - gene protein_coding_gene FALSE TRUE AT1G79550.1|AT1G79550.2 PGK (PHOSPHOGLYCERATE KINASE) Encodes cytosolic phosphoglycerate kinase (PGK). similar to PGK1 (PHOSPHOGLYCERATE KINASE 1), phosphoglycerate kinase [Arabidopsis thaliana] (TAIR:AT3G12780.1); similar to phosphoglycerate kinase, putative [Arabidopsis thaliana] (TAIR:AT1G56190.1); similar to Phosphoglycerate kinase [Medicago truncatula] (GB:ABE80997.1); similar to cytosolic phosphoglycerate kinase 1 [Populus nigra] (GB:BAA33801.1); similar to Phosphoglycerate kinase, cytosolic (GB:Q42962); contains InterPro domain Phosphoglycerate kinase; (InterPro:IPR001576) 0.0563853881286727 0.815251631711446 0.437433629784517 1 1.10631186130875 21.6516914410051 0.0563853881286727 0.0207613153536765
AT2G04700_at 10.8570302678569 11.0362156306555 10.9068826915618 10.8841539769675 11.1185331626371 10.8120733129769 11.0874717955588 11.1586192721156 11.1015636486347 11.0799648960713 11.2999409806142 11.2712773094119 11.1471357893725 11.4646460389598 10.9708514475357 11.2639672762967 11.0465686545312 11.3460855172341 10.7914665786274 0.121113352906334 0.116497226155623 0.122384626124404 0.122792852667037 0.120303666148441 0.128454158922260 0.119478897449652 0.116497226155623 0.129630390861850 0.116497226155623 0.118433875457494 0.116497226155623 0.116497226155623 0.118217875120447 0.122896916411583 0.117095156784480 0.125476474987207 0.121472774698431 0.125519781025703 2 2|0 +|/ 1646975 1648103 1647417.5 1646804 1648554 + gene protein_coding_gene FALSE TRUE AT2G04700.1 ferredoxin thioredoxin reductase catalytic beta chain family protein similar to Ferredoxin-thioredoxin reductase catalytic chain, chloroplast precursor (FTR-C) (GB:O49856); contains InterPro domain Ferredoxin thioredoxin reductase, beta chain; (InterPro:IPR004209) 0.0654436483945873 0.814538745243914 0.437819783184265 1 1.10574954139326 22.0912762643858 0.0654436483945873 0.0627794026233854
AT4G04955_at 7.23851428313781 7.3873656577068 7.31724463875667 7.21447764809938 8.0022674679447 7.5303911701032 7.37088816325216 6.65326628542361 7.59846670057022 7.11531999824658 7.0749438051756 7.0507340417701 6.59306745210535 6.73796709778613 6.16882252088784 7.89888075546746 6.70450916024669 6.94293072207889 7.64566139526210 0.203231330267409 0.206330879668653 0.20351347041421 0.208009754440756 0.200889569720757 0.226005589001543 0.200484072620881 0.206089823721835 0.207617334368761 0.20962780830231 0.205536805079371 0.201091891490341 0.206881815870771 0.223271261064874 0.224967068377882 0.205197384876379 0.235647160633566 0.214276268786895 0.208522273626847 4 4|0 -|/ 2522314 2523234 2522882.778 2522032 2525278 - gene protein_coding_gene FALSE TRUE AT4G04955.1 ATALN (ARABIDOPSIS ALLANTOINASE); allantoinase/ hydrolase Encodes an allantoinase which is involved in allantoin degradation and assimilation. Gene expression was induced when allantoin was added to the medium. The insertion mutant, ataln m2-1, did not grow well on the MS medium where allantoin, instead of ammonium nitrate, was supplied. similar to dihydropyrimidinase / DHPase / dihydropyrimidine amidohydrolase / hydantoinase (PYD2) [Arabidopsis thaliana] (TAIR:AT5G12200.1); similar to Os04g0680400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054286.1); similar to allantoinase [Robinia pseudoacacia] (GB:AAR29343.1); contains InterPro domain Metallo-dependent hydrolase, composite; (InterPro:IPR011059); contains InterPro domain Amidohydrolase 1; (InterPro:IPR006680) -0.101540393203660 -0.813877506390318 0.438178168274234 1 1.10522833186152 14.5141175688694 -0.101540393203660 0.151890955437182
AT3G19980_at 8.19754515118037 8.3143263058945 8.40026417180948 8.34536850828676 8.42036097420989 8.27725542306723 8.43573599272026 8.83692706725773 7.52725483288271 7.7616106486574 8.04839442867598 7.57083265155221 8.13251813616023 7.84506891061025 7.71590683269182 8.06209284430251 7.7909872160174 7.59803857399619 7.57168856470868 0.180780465970424 0.187426501323643 0.182736404524109 0.187606191335819 0.180509806006920 0.18733996368648 0.201111318954156 0.186013492557719 0.209116994473181 0.190050841566531 0.185996794570539 0.19168288214796 0.191990909391318 0.187249085653676 0.187475215321314 0.185440439475363 0.182189531235844 0.185639480467252 0.185591686073079 3 3|0 +|/ 6963545 6964742 6964062.333 6961742 6965114 + gene protein_coding_gene FALSE TRUE AT3G19980.1 ATFYPP3 (SERINE/THREONINE PROTEIN PHOSPHATASE); protein serine/threonine phosphatase Encodes catalytic subunit of serine/threonine protein phosphatase 2A. It can associate with phytochromes A and B in vitro. Mutant plants display an accelerated flowering phenotype. similar to serine/threonine protein phosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G50370.1); similar to Ser/Thr protein phosphatase homologous to PPX [Malus x domestica] (GB:CAA87385.1); similar to serine/threonine protein phosphatase 2A [Pisum sativum] (GB:AAM21172.1); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0699869536240088 0.813395264380813 0.438439664989343 1 1.10484843864923 16.1363052649702 0.0699869536240088 0.0770209617673666
AT2G47760_at 6.84495316397904 7.32070090704119 6.93721480294465 6.54663440852064 7.06981114213542 6.35870445029865 6.14468884028738 6.29154993644507 6.82194702508752 6.03219044732832 6.39094317378448 6.6177652216244 6.01465272605902 6.42370329610918 6.23497307668471 6.28832095381249 4.76720677696054 6.28924405784928 6.40932189105562 0.213891229601290 0.213603220454664 0.216320092718730 0.218115271417293 0.217162048592375 0.215593182488851 0.220384655109915 0.212959604772228 0.221006712543996 0.216809164251226 0.211969348666695 0.210977392843708 0.213179167809664 0.217708596907071 0.221887791261844 0.210977392843708 0.252853769143496 0.210977392843708 0.232581593672903 2 2|0 -|/ 19572779 19573703 19573122.1 19572552 19575335 - gene protein_coding_gene FALSE TRUE AT2G47760.1|AT2G47760.2|AT2G47760.3 ALG3 family protein|catalytic similar to Mannosyltransferase (ISS) [Ostreococcus tauri] (GB:CAL57845.1); contains InterPro domain ALG3; (InterPro:IPR007873) -0.107591985879987 -0.813280361134558 0.438501987209735 1 1.10475794997397 12.9640343472153 -0.107591985879987 0.164732212345769
AT4G34150_at 8.57530369857298 8.51428073923696 8.81455897564992 9.0944585360322 8.2896436235021 8.3882313710852 8.66400069285234 8.65338459616332 8.47582391896097 8.13571726988528 7.8321687125823 7.53001614607056 8.18708893987736 8.15395475439346 7.63175494715095 8.41220668630358 8.71610881370314 7.67685720589387 7.95013212922629 0.159016976398153 0.164055992547658 0.167367286781006 0.162497063045888 0.159649158622571 0.162212473715984 0.164185205563045 0.157932387480723 0.172597333721024 0.156898041508795 0.163544166799455 0.166363079950491 0.164087361892963 0.172380030351136 0.166405017035114 0.156898041508795 0.167137377490776 0.162177591389615 0.164366495934973 4 4 + 16355482 16356923 16356341.818 16354950 16357297 + gene protein_coding_gene FALSE TRUE AT4G34150.1 C2 domain-containing protein similar to (AT)SRC2/SRC2 (SOYBEAN GENE REGULATED BY COLD-2), protein binding [Arabidopsis thaliana] (TAIR:AT1G09070.1); similar to C2 domain-containing protein / protein kinase-related [Musa acuminata] (GB:ABF71994.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain XYPPX repeat; (InterPro:IPR006031); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) -0.062362109374829 -0.812645873065697 0.438846235148237 1 1.10425847190882 16.7266047616891 -0.062362109374829 0.0524614894950106
AT2G25800_at 6.37711720032785 7.14069565861294 5.79623897549127 5.89437744334269 6.91321929886274 7.00216590042835 6.49445575658132 7.0124029125717 7.65012950962071 6.99622183569612 8.18569519116876 7.9072188045339 7.93497889127617 8.28894451386338 8.02699146669672 7.71054476918944 7.31857924525383 7.51430788614648 7.23736843774584 0.215635672535935 0.180233037268078 0.180521719342299 0.181479500901948 0.178709108812065 0.174829074181784 0.186441030836044 0.179462976440309 0.178992445527665 0.185499428527837 0.174829074181784 0.176065300962712 0.177219204999246 0.176421213062841 0.180232309092733 0.174829074181784 0.188779843970777 0.176556228394667 0.184872511787403 2 2 - 11013250 11013791 11013544.273 11013002 11016817 - gene protein_coding_gene FALSE TRUE AT2G25800.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G20010.2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04470.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G33420.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28473.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05347.1); similar to Protein of unknown function DUF810 [Medicago truncatula] (GB:ABE78559.1); contains InterPro domain Protein of unknown function DUF810; (InterPro:IPR008528) 0.105833428751503 0.8124184731507 0.438969658119583 1 1.10407953958497 14.1565745717958 0.105833428751503 0.161309224543100
AT3G04740_at 5.63522659296759 6.53293101170275 5.32263523873764 5.96821882297625 5.84875829698636 5.79119568249115 5.146427244919 5.83800929915753 5.47165212977091 6.08810654190363 6.14983280370851 5.95814896344169 5.6751155281628 6.01131035925986 5.40173354048754 6.24790262804055 5.87375123452625 5.47870091670431 6.65088107812396 0.197910699663371 0.199458702332649 0.208298657405132 0.201942324134264 0.20491003813661 0.205725782635127 0.200619692592894 0.206755308117443 0.214140333950930 0.202367646189366 0.20092531028629 0.199700952646535 0.200304213897838 0.20823477968512 0.200939697492792 0.197910699663371 0.207702471275781 0.202601325283344 0.199932532138815 3 3 + 1299977 1300483 1300235.545 1293813 1300720 + gene protein_coding_gene FALSE TRUE AT3G04740.1 SWP (STRUWWELPETER) encodes a protein with similarities to subunits of the Mediator complex, required for RNA polymerase II recruitment at target promoters in response to specific activators. Lines carrying loss of function mutations in the gene have reduced cell numbers in aerial organs. On the other hand, lines overexpressing the gene have increased number of small cells in clusters, suggesting cell division is more unsynchronized in the overexpressors. similar to Os08g0332800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061570.1); similar to Os09g0281900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062771.1); similar to SWP1 protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01689.1); contains domain gb def: F7O18.23 protein (SWP1) (Struwwelpeter 1 protein) (PTHR12809:SF5); contains domain FAMILY NOT NAMED (PTHR12809) -0.138048890015130 -0.812268684593126 0.43905096988275 1 1.10396169978468 11.7203128971044 -0.138048890015130 0.225917583088565
AT2G17390_at 10.4868395052644 10.7946128281632 10.8072919121773 10.9723443556172 10.7918650858047 10.7358835517842 10.7069736989510 10.9608958703669 10.5553601932756 10.7020837321053 10.6402143792896 10.5947707321012 10.6340305242937 10.7168485750510 10.5450670752753 10.8456343410662 10.6621245910021 10.7401840862374 10.6123640796848 0.0724162492525828 0.0705370934845172 0.0716085504536121 0.0705370934845172 0.0725877152480626 0.0746022287033535 0.0738577786442952 0.0743699301129241 0.0813629169555428 0.0725423496571636 0.0723578431695182 0.0718783037882723 0.0718618169552849 0.0718387583576412 0.0768919803234807 0.0714656198985333 0.077773633976217 0.0746573154249045 0.0730602163476307 2 2|0 +|/ 7563663 7564801 7564280.5 7562712 7565120 + gene protein_coding_gene FALSE TRUE AT2G17390.1 ankyrin repeat family protein similar to AKR2 (ANKYRIN REPEAT-CONTAINING PROTEIN 2), protein binding [Arabidopsis thaliana] (TAIR:AT4G35450.1); similar to ankyrin domain protein [Nicotiana tabacum] (GB:AAN63819.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0693028518385632 0.81212728032194 0.439127739709001 1 1.10385047280719 21.4299026625468 0.0693028518385632 0.0753487893138193
AT3G20320_at 6.91120552077035 7.11505825571033 6.1781403114415 6.35883216503468 6.75236150148804 6.49339223488326 7.43020582797442 7.15587216573687 6.63969510134442 6.4835559379383 7.30950144731128 7.33780003827187 7.26052196341623 7.37013321815828 7.71569380884708 7.4848280197319 6.65375978115197 6.77516536247894 6.89633450540428 0.189189819514689 0.191175556227984 0.197601793489706 0.199393795463299 0.195727329144286 0.188349635622738 0.190444481320174 0.187613138246275 0.218216365699597 0.196217389579737 0.188327440521165 0.197536496712033 0.186047511470316 0.186047511470316 0.195476927360494 0.1909129338666 0.201676689711573 0.198460188612102 0.188302256559718 3 3 - 7087673 7088921 7088500.636 7087477 7089868 - gene protein_coding_gene FALSE TRUE AT3G20320.1|AT3G20320.2 TGD2 (TRIGALACTOSYLDIACYLGLYCEROL2) Encodes a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast. A phosphatidic acid-binding protein with a predicted mycobacterial cell entry domain. It is tethered to the inner chloroplast envelope membrane facing the outer envelope membrane. Presumed bacterial orthologs of TGD1 and TGD2 in Gram-negative bacteria are typically organized in transcriptional units, suggesting their involvement in a common biological process. similar to Os01g0974000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045550.1); similar to ABC-type transport system-like [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL53419.1); contains InterPro domain Mammalian cell entry related; (InterPro:IPR003399) -0.0710868079887574 -0.81187971663846 0.439262166594486 1 1.10365578144221 13.7551938161216 -0.0710868079887574 0.0805270644198994
AT3G57630_at 5.09948978671731 5.3263689334607 6.1837811979989 5.95498635819774 4.22095140479808 3.57461809239582 5.25024245253164 4.66404164121255 4.31855246821476 4.10110826364393 4.53188647312599 5.52547826344647 4.28828464589424 4.51383449372982 4.05531748790955 4.51303395156225 3.74441879498149 4.43471149871343 3.99570897378436 0.225670624090313 0.217873735273638 0.240785451245395 0.224131206541483 0.218263292130061 0.223395723579863 0.223148982348775 0.21883101939657 0.23600204560668 0.221852012744476 0.222897726060684 0.222447574666991 0.216806344945155 0.222778379455527 0.222944533865368 0.214562246908298 0.225027639706068 0.230482699208628 0.216135581836319 3 3 - 21350531 21351464 21350909.273 21350279 21354773 - gene protein_coding_gene FALSE TRUE AT3G57630.1|AT3G57630.2 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to Os03g0174300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049126.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN62780.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain EGF-like, type 3; (InterPro:IPR000742); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF, extracellular; (InterPro:IPR013111); contains InterPro domain Exostosin-like; (InterPro:IPR004263)|similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to Os03g0174300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049126.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN62780.1); contains InterPro domain EGF, extracellular; (InterPro:IPR013111); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.105481346244902 0.810965533664372 0.43975881015563 1 1.10293727558978 9.32897361827313 0.105481346244902 0.160968688162278
AT4G39970_at 9.76549767622487 9.55923499286957 9.37075977386079 8.95221455065781 9.793363454274 9.36321741235138 10.2498090758973 9.93612098456776 10.3191002541554 10.3396459875154 10.7609225476499 10.8220689023689 10.5019114734037 10.7729508417800 10.6888827713733 10.8117369792253 10.3169829119184 10.6056311392992 10.3245851238414 0.0875392726880306 0.0875392726880306 0.0925403055412296 0.100478891674905 0.0881791692050586 0.0936633516434652 0.0897746899086789 0.0901915823894288 0.0967085713835596 0.0875392726880306 0.0883539178666152 0.0877627500951985 0.089357540476206 0.0883482020801818 0.092524114600241 0.0875392726880306 0.089632693591853 0.0913473901015106 0.0875392726880306 4 4|0 -|/ 18536840 18538006 18537414.25 18536532 18538500 - gene protein_coding_gene FALSE TRUE AT4G39970.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G48420.1); similar to Os08g0485900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062091.1); similar to Predicted haloacid-halidohydrolase and related hydrolases (ISS) [Ostreococcus tauri] (GB:CAL53722.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.0877090302819648 -0.809978807889998 0.440295292639718 1 1.10216252219543 20.1177337739453 -0.0877090302819648 0.122508797473197
AT2G33800_at 11.0365593830374 11.1470795525928 10.5959949681619 10.5313008869957 10.9614927392807 10.7771281798857 10.8404281983716 11.0874338345721 11.3059568660588 11.3954849203660 11.5275474653700 11.919331326732 11.2329180324687 11.3918781108040 12.0503584195888 11.5934984061777 11.0707708518828 11.4599203030318 11.3377551723412 0.0834152356571154 0.077353672444923 0.0805040023901289 0.0844815216881593 0.0805721658287448 0.0807291903164304 0.0801311377234025 0.0786731529750492 0.0816192164577492 0.078889010313079 0.0784762280216645 0.0808178960251266 0.0773738727025372 0.0815716938730948 0.0824193935079361 0.0806592006698224 0.087478493199811 0.0789414438514032 0.0775970250587995 2 2 - 14308018 14309092 14308514.091 14307848 14309506 - gene protein_coding_gene FALSE TRUE AT2G33800.1 ribosomal protein S5 family protein Identical to 30S ribosomal protein S5, chloroplast precursor (rps5) [Arabidopsis Thaliana] (GB:P93014); similar to ribosomal protein S5 family protein [Arabidopsis thaliana] (TAIR:AT1G64880.1); similar to 30S ribosomal protein S5, chloroplast precursor (GB:Q9ST69); contains InterPro domain Ribosomal protein S5, bacterial and chloroplast; (InterPro:IPR005712); contains InterPro domain Ribosomal protein S5, C-terminal; (InterPro:IPR005324); contains InterPro domain Ribosomal protein S5; (InterPro:IPR000851) -0.0635085851554471 -0.808707746240349 0.440987024612385 1 1.10116569054452 22.3107656432434 -0.0635085851554471 0.0577603758617398
AT1G70100_at 5.7322977007482 5.95153614009368 4.86793702773907 5.2802952761932 6.51596046772298 6.43823586490824 5.81293219769547 5.87663380809772 5.91662100182482 5.43062595023644 6.39970770310575 6.25157246482831 5.57124883078147 6.12218206102159 6.04321443115342 5.73165727999244 5.0760863513869 5.92694364953705 5.69197301057127 0.230077131809253 0.222229212873153 0.239259699437299 0.225127341701377 0.226226252434643 0.239482477908491 0.22882255424814 0.23096540635116 0.226888127077193 0.237535773271661 0.225721165227618 0.232191967221544 0.226038543837205 0.249775588972827 0.225561565515126 0.227036578264995 0.241548619213032 0.227180225219402 0.233330001863022 1 1|0 +|/ 26408491 26409177 26408758.2 26406746 26409782 + gene protein_coding_gene FALSE TRUE AT1G70100.1|AT1G70100.2|AT1G70100.3|AT1G70100.4 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G24160.1); similar to Targeting for Xklp2 [Medicago truncatula] (GB:ABE84619.1) 0.0714219032068977 0.806990733324156 0.441922623104629 1 1.09982122421798 11.5945118524098 0.0714219032068977 0.082669397035115
AT1G13460_at 6.26723525852821 6.34899916361368 6.15294053708523 6.22128916463327 7.21707716640565 6.18528130372928 7.15299166866009 6.61289992847329 6.09216438811216 5.06590044096955 5.97467158109298 6.01906518988981 6.24157965298405 6.13852972546147 5.57692580150596 6.42195258596301 5.11666094162608 5.71693441436296 5.33885507401065 0.215896708937809 0.204176162269934 0.213533938040296 0.201365639156269 0.214451985279564 0.211411816337295 0.212127535092759 0.206980417516545 0.219960128553119 0.213654576159944 0.206472771445515 0.202871547291455 0.203259442050179 0.205375069923606 0.207031390053435 0.206980949206756 0.226193572603887 0.204672296622902 0.203082702748563 1 1 + 4617382 4617932 4617564.545 4615810 4618326 + gene protein_coding_gene FALSE TRUE AT1G13460.1|AT1G13460.2 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative Identical to Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform (PP2A, B' subunit, theta isoform) (AtB' theta) (B'THETA) [Arabidopsis Thaliana] (GB:Q8LF36;GB:Q9FX52); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT3G21650.1); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) [Arabidopsis thaliana] (TAIR:AT4G15415.1); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os04g0485100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053130.1); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) 0.125216111862270 0.806854608490139 0.44199685502836 1 1.09971473836123 12.2197209177119 0.125216111862270 0.202382132639135
AT1G68220_at 7.1217290810157 7.25019978651912 5.74505585538967 5.65342981644075 6.68488261541206 6.32881021130403 5.59664857949373 5.90290418466156 3.94625172797625 4.7554384190129 4.44769165160733 4.96496738210467 4.53816449156164 4.56216141215880 5.34936038017627 4.46139432245334 5.37757489304167 5.53300888601584 4.4818166411828 0.25023498780191 0.253719040132249 0.251764143365032 0.264063543826999 0.245769313414931 0.253177995408509 0.245769313414931 0.257652867665758 0.250294868536715 0.250503583856763 0.247383400982617 0.25213732335299 0.249126004973194 0.251353264047976 0.252864280429381 0.252975101348120 0.254490429453241 0.25189018965609 0.252851150263239 1 1 + 25574213 25575163 25574768.091 25573894 25575375 + gene protein_coding_gene FALSE TRUE AT1G68220.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G13380.1); similar to Os08g0261100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061393.1); similar to Os07g0462200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059580.1); similar to fiber protein Fb34 [Gossypium barbadense] (GB:AAR07596.1); contains InterPro domain Protein of unknown function DUF1218; (InterPro:IPR009606) 0.0724811906900314 0.806374878104182 0.442258530268394 1 1.09933958273943 10.9348538613365 0.0724811906900314 0.0857415754072685
AT3G14620_at 9.07591803406338 9.09440181419375 9.1535210352453 8.92118918162634 8.23899025111862 7.89622777163582 7.77655430212733 7.53397014051211 6.95114123543676 7.04193139533678 6.702786896508 6.18233252679323 6.72812290186822 7.3063675013858 5.95647590626166 7.40140887890019 7.39651347170097 7.0335711891565 6.64021735182467 0.199681777501359 0.201550371430468 0.196059069091546 0.197948620829055 0.191298268309874 0.197642790791686 0.191511701266640 0.186078734468518 0.188037116632435 0.190343202444748 0.194549248917808 0.194262657303903 0.188188627169797 0.189644056631787 0.211360693044998 0.186078734468518 0.191007881331448 0.198630015530894 0.193447029311792 3 3 + 4916199 4916813 4916553.455 4914921 4917085 + gene protein_coding_gene FALSE TRUE AT3G14620.1 CYP72A8 (cytochrome P450, family 72, subfamily A, polypeptide 8); oxygen binding putative cytochrome P450 similar to CYP72A13 (cytochrome P450, family 72, subfamily A, polypeptide 13), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14660.1); similar to CYP72A7 (cytochrome P450, family 72, subfamily A, polypeptide 7), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G14610.1); similar to cytochrome P450 monooxygenase CYP72A59 [Medicago truncatula] (GB:ABC59078.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.071477534360733 0.805824592910952 0.442558820051256 1 1.09890948496799 15.3194519346176 0.071477534360733 0.083111821184772
AT1G52550_at 3.49875194031854 4.01556386789043 4.2902369181208 4.62106236182264 5.05368790856674 4.42068445272791 4.72387004206392 5.03067545475398 5.1818358380594 4.66369973709059 5.0156144574788 4.5809089892568 4.97546365790505 5.7838627000064 4.15119280768009 5.61010275211151 5.16834257623857 4.47471898355801 5.27217181736513 0.273104690039739 0.254815717178312 0.265762128459819 0.257172803558089 0.254739995328689 0.266266908419184 0.265151824622716 0.257967763071037 0.260231105382930 0.262549347643074 0.261060186317619 0.255920922656696 0.254739995328689 0.254739995328689 0.255901825853839 0.254739995328689 0.260371643440207 0.264408739111234 0.259000637828129 1 1|0 -|/ 19576856 19577498 19577042.889 19576596 19577699 - gene protein_coding_gene FALSE TRUE AT1G52550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G15780.1); similar to Os01g0392100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043115.1) 0.104996326038588 0.805147494076871 0.442928501689524 1 1.09838061208821 9.46144744980034 0.104996326038588 0.161541034671491
AT2G45010_at 8.87137012141023 8.97015782046781 8.9763051862679 8.53294574771755 8.44036003054971 8.12716965421479 7.47549535614185 7.57923164641443 8.22292841693373 7.4459064375334 7.13376452134419 7.76882958262496 7.02452003515649 6.96704925070085 7.70425310378578 7.10498032109912 7.06324942903881 7.29391967214275 7.44897273927412 0.194168616019575 0.192603311089348 0.1966425521697 0.203552938250780 0.193232442502777 0.199933390516144 0.188611220430039 0.185394126456217 0.197247486976855 0.199296532580053 0.192712913237769 0.191032545984186 0.197037180648487 0.192468609823088 0.187662566854819 0.192129713429863 0.197770567292533 0.192812609828633 0.188247623611585 2 2|0 +|/ 18575871 18576665 18576275.1 18574985 18576934 + gene protein_coding_gene FALSE TRUE AT2G45010.1|AT2G45010.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G51400.1); similar to unknown [Hordeum vulgare subsp. vulgare] (GB:AAS58477.1); contains InterPro domain Protein of unknown function Cys-rich; (InterPro:IPR006461) -0.076616853257445 -0.8043406017173 0.443369321342648 1 1.09775085110226 15.8533827474316 -0.076616853257445 0.0971538239662878
AT1G41770_at 4.27286042267357 3.89782132790451 4.47148622944114 3.91103147708709 4.03408049172017 4.2872794978291 4.28450076882103 4.41671644386888 5.35735408268695 5.12913547602594 5.02815743733017 5.11819972027806 4.34203935454339 5.30613895496978 4.95760854044019 5.22543801029668 5.30570504521951 5.25288581922798 5.12210618957126 0.203554507440227 0.201977917101039 0.200932004839000 0.210745512873463 0.216104765402168 0.203943691162077 0.211755749382907 0.220642409024672 0.200623247312357 0.204028134720620 0.206763121412634 0.200623247312357 0.200623247312357 0.210712357978302 0.206464085915088 0.200992442553118 0.201913010702069 0.211745215183384 0.207012032052727 1 0|1 /|+ 15539788 15539949 15539853.8 15539662 15539973 + gene protein_coding_gene FALSE TRUE AT1G41770.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G33064.1) -0.0889244779687257 -0.804166754081927 0.443464336336972 1 1.09761523707168 9.33191551227632 -0.0889244779687257 0.126738715749749
AT1G67500_at 5.95053682433199 6.0679133820086 5.52401959803225 5.7605423505412 6.36873581286189 5.86134627562045 4.67171180493055 4.15100028769547 4.62534539123215 5.14485602280921 4.48206424646748 4.47887847930125 4.53798019896507 4.48570258140051 4.0360901774776 4.54363353832074 5.16213044202493 4.13131222741540 5.12918067927771 0.247352892202411 0.246342090941226 0.24701831295246 0.254434186226973 0.247033960243984 0.257875287769339 0.243205721888229 0.245674698907795 0.255276895639514 0.243205721888229 0.246988788503308 0.243205721888229 0.244295451398662 0.245284018349900 0.246127739507632 0.247534779141314 0.247736524323302 0.244047942430377 0.244285422122422 1 1|0 -|/ 25291381 25292311 25291906.7 25291370 25300377 - gene protein_coding_gene FALSE TRUE AT1G67500.1 ATREV3 (Arabidopsis thaliana recovery protein 3); DNA binding Encodes the catalytic subunit of DNA polymerase zeta.Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). similar to DNA-directed DNA polymerase delta catalytic subunit, putative (POLD1) [Arabidopsis thaliana] (TAIR:AT5G63960.1); similar to REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like [Mus musculus] (GB:NP_035394.1); similar to DNA-directed DNA polymerase B [Medicago truncatula] (GB:ABE90691.1); similar to DNA polymerase zeta catalytic subunit (Seizure-related protein 4) (GB:Q61493); contains InterPro domain DNA-directed DNA polymerase B; (InterPro:IPR006172); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain DNA polymerase B region; (InterPro:IPR006134) 0.0920668615854503 0.804041956132094 0.44353255214026 1 1.09751790074722 10.2688181341001 0.0920668615854503 0.133858078387481
AT4G29870_at 7.22976988990913 7.81016908436913 6.50390820395656 7.10303845110983 6.87022158411175 7.36278164359377 6.28923789283525 7.31171721156058 7.10910815912075 6.56718721550896 6.8516610528947 6.84417285147236 6.80345861481583 6.72581637949732 6.86813779811464 6.44434164114764 5.54770095295463 6.8071917979668 6.43220708340839 0.218640115474812 0.208613797342899 0.210273543350864 0.213224080510941 0.217392349561410 0.222899335802241 0.208854710759723 0.208186296036368 0.214877029343374 0.209659378753101 0.206903068975158 0.208391453259610 0.211671104408078 0.212635497216637 0.2111707564723 0.206903068975158 0.251728213141693 0.211308649954380 0.211882876946639 4 4 + 14606026 14606512 14606253.818 14606007 14606680 + gene protein_coding_gene FALSE TRUE AT4G29870.1 similar to membrane protein, putative [Arabidopsis thaliana] (TAIR:AT2G19340.2); similar to Os02g0315400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046663.1); similar to hypothetical protein DDBDRAFT_0204707 [Dictyostelium discoideum AX4] (GB:XP_641827.1); contains domain SUBFAMILY NOT NAMED (PTHR13160:SF2); contains domain FAMILY NOT NAMED (PTHR13160) -0.145755032773463 -0.803903324786513 0.443608337754727 1 1.09740979005919 13.7173026395744 -0.145755032773463 0.243749177055874
AT1G18210_at 9.61087877625002 9.7533332062367 9.20202210311513 9.37479706946091 9.01177060483799 9.21472024698078 8.11465378591607 8.23453492897733 8.70032192138142 8.04287271937763 7.80177898115891 8.25275202898231 7.3535060558255 8.03708047996671 8.00752081461114 8.51422853284897 7.6987452816657 8.37665725123416 7.71396034246277 0.147778182891183 0.143415948478131 0.140089938701018 0.141125606590664 0.141964966642412 0.145851585927946 0.144232594972049 0.140888364319184 0.141081867145981 0.143188990420030 0.148804018437109 0.139750438371093 0.147444846523795 0.144856669918919 0.145469304638242 0.138247825700755 0.156125596193341 0.149230109028929 0.154637587249029 1 1 - 6268353 6268662 6268508.364 6266602 6268821 - gene protein_coding_gene FALSE TRUE AT1G18210.1|AT1G18210.2 calcium-binding protein, putative similar to calcium-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G73630.1); similar to Calcium-binding EF-hand [Medicago truncatula] (GB:ABE81417.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0626880078165399 0.803570288838785 0.443790434424380 1 1.09715013887521 17.1434231765688 0.0626880078165399 0.0562639274945513
AT3G09470_at 5.47413592200747 6.0962273975134 5.2430790936216 5.66432505771808 6.11635253283907 5.39287784965969 5.32615312716347 5.63295008388782 4.73249472265301 5.43377124419094 5.4882803061503 5.49892456232026 5.50348224350093 5.51474978791663 5.71991512785106 5.77821980581933 5.33924357307155 5.07693247841688 5.51327103817649 0.179794679478531 0.174186655949498 0.176379355233796 0.175795836305344 0.176285192876479 0.177682590514439 0.176724939125497 0.178738118875898 0.182956220637838 0.174379123072507 0.178428972474869 0.174375112538984 0.177547328815395 0.176354042688839 0.182516097812513 0.17571371151392 0.178028565883116 0.18430066323999 0.174286736012177 3 3 - 2910635 2913976 2911921.864 2910379 2914519 - gene protein_coding_gene FALSE TRUE AT3G09470.1|AT3G09470.2 Identical to UNC93-like protein [Arabidopsis Thaliana] (GB:Q94AA1;GB:Q67XL1;GB:Q67Y57;GB:Q9SF56); similar to Protein of unknown function DUF895, eukaryotic [Medicago truncatula] (GB:ABE82090.1); contains InterPro domain Protein of unknown function DUF895, eukaryotic; (InterPro:IPR010291) 0.117624075720313 0.80338671002028 0.443890832905017 1 1.09700705080486 10.9765030433702 0.117624075720313 0.188143607151834
AT4G26500_at 6.46156131087144 6.89618857720824 6.45841905854952 6.78104636668757 6.29950421747336 6.25721712124223 7.43239924572678 7.48328024820762 5.66944167647414 6.64940805733282 6.33746481731728 6.59525569302574 6.31633740869518 6.7023662993088 6.8539093691617 6.60984795792624 6.59294081783263 6.85431113824185 6.09860761573886 0.189147759278814 0.181028249632320 0.190058189586462 0.193870137679225 0.180342031444006 0.198208818906370 0.186223337903532 0.185166620129317 0.196804245870956 0.190512557074769 0.180865325684344 0.184447304990645 0.185264461155709 0.186536798227724 0.192184822225437 0.182906075120606 0.190447934940933 0.184524744446518 0.191554822743020 4 4 - 13382467 13383017 13382735.091 13382206 13383649 - gene protein_coding_gene FALSE TRUE AT4G26500.1 ATSUFE/CPSUFE/EMB1374 (EMBRYO DEFECTIVE 1374); enzyme activator/ transcription regulator Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis. Identical to SufE-like protein, chloroplast precursor [Arabidopsis Thaliana] (GB:Q84W65;GB:O65584); similar to BolA-like family protein [Arabidopsis thaliana] (TAIR:AT1G55805.1); similar to Os09g0270900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062734.1); similar to hypothetical protein slr1419 [Synechocystis sp. PCC 6803] (GB:NP_442816.1); contains InterPro domain BolA-like protein; (InterPro:IPR002634); contains InterPro domain Fe-S metabolism associated SufE; (InterPro:IPR003808) -0.0753294583376376 -0.802132636711592 0.444577091899782 1 1.09603032158428 13.1321803370145 -0.0753294583376376 0.0943689654319378
AT4G36150_at 5.9494623793587 6.26180438883082 5.55421110535018 5.75108367821199 5.39108434583681 4.74993717012029 4.09371348384876 4.23098535125561 5.27699369554115 4.67706545296966 4.66753299732921 4.75197459096998 4.04406959208441 5.27872437983944 3.95972931785963 4.73053647185725 4.0411590382838 4.64146646529528 4.81310854143902 0.252638771333531 0.258432795160931 0.249662841786379 0.262499904917775 0.245674390626465 0.256732580792049 0.247001348587306 0.251124359755308 0.26594821642488 0.252766795916162 0.250343052570622 0.249138957289293 0.266842649853876 0.248660312100493 0.250031783344586 0.247594025991132 0.257891681261969 0.271207691629945 0.247634861009678 4 4 + 17108115 17108648 17108356.182 17104779 17108714 + gene protein_coding_gene FALSE TRUE AT4G36150.1 disease resistance protein (TIR-NBS-LRR class), putative similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT2G17060.1); similar to RPS4 (RESISTANT TO P. SYRINGAE 4) [Arabidopsis thaliana] (TAIR:AT5G45250.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G45200.1); similar to TIR-NBS-LRR-TIR type disease resistance protein [Populus trichocarpa] (GB:ABF81441.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713) -0.0902012246185306 -0.801861777715996 0.444725406721779 1 1.09581953424845 9.96617940618822 -0.0902012246185306 0.130220570935342
AT1G65980_at 10.9196466845079 11.1115381212694 11.4270061716429 11.4551286117341 11.3238266368355 11.0775499010891 11.1719648755083 11.1749205454555 10.9968524048616 11.0399576637322 10.9074494572575 10.6414832843327 11.0316109109480 10.9489269210389 10.6922725641768 10.9027492155538 11.0152362069629 10.9067592405800 10.9130413867730 0.0792792520576582 0.0761265289965455 0.0807695153670133 0.081691444317295 0.0765294978542562 0.0806895040311101 0.075267786552349 0.0763766913721648 0.0818072283829682 0.0769468201359483 0.0755610119195622 0.0751842017792711 0.0759232044942795 0.0791215123432589 0.0767419696765022 0.0759380913706005 0.0801985419517348 0.0784129221433623 0.0777071025829235 1 1|0 -|/ 24563189 24564356 24563458 24562969 24564599 - gene protein_coding_gene FALSE TRUE AT1G65980.1|AT1G65980.2 TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1); antioxidant thioredoxin-dependent peroxidase similar to TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65970.1); similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] (GB:AAD33602.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335)|similar to TPX2 (THIOREDOXIN-DEPENDENT PEROXIDASE 2), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65970.1); similar to type 2 peroxiredoxin [Brassica rapa subsp. pekinensis] (GB:AAD33602.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; (InterPro:IPR000866) 0.0619437151454272 0.801034353766191 0.445178688366216 1 1.09517599214727 22.1397450902863 0.0619437151454272 0.0542504046518777
AT3G58180_at 5.66903725106876 6.00543054685969 6.30096465781995 5.95448543096188 6.13206987039628 6.12602662017566 6.16006461147431 6.20493402401457 5.83246393868898 5.42081070776235 5.92102143621603 5.7775993702271 5.40506827501615 5.43090062443135 5.85618011617396 5.76664356190658 5.87159924723488 5.66392462641021 5.80919996149963 0.189734411858160 0.187161704931178 0.18846568019838 0.190464198776456 0.196140629581245 0.187104372810384 0.193925094286574 0.189974282755703 0.196975154621772 0.194251966753356 0.187104372810384 0.190620377761930 0.196738337396295 0.201673331694883 0.195543944958032 0.187104372810384 0.196402058857723 0.196811340762156 0.187159233625948 3 3|0 +|/ 21555964 21556758 21556244.714 21555074 21557156 + gene protein_coding_gene FALSE TRUE AT3G58180.1 PBS lyase HEAT-like repeat-containing protein Identical to Deoxyhypusine hydroxylase (EC 1.14.99.29) (Deoxyhypusine monooxygenase) [Arabidopsis Thaliana] (GB:Q94JW0;GB:Q9M2J8); similar to PBS lyase HEAT-like repeat-containing protein [Arabidopsis thaliana] (TAIR:AT3G62530.1); similar to Deoxyhypusine hydroxylase-B (Deoxyhypusine monooxygenase-B) (GB:Q2QLW3); similar to Os12g0163300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066229.1); similar to Os12g0626100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067322.1); contains InterPro domain PBS lyase HEAT-like repeat; (InterPro:IPR004155); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0713228288512469 0.800745185761423 0.445337174852078 1 1.09495122009479 11.7686809731892 0.0713228288512469 0.0839374150727125
AT3G25480_at 7.5762322150128 7.77095802710943 7.68479089628272 7.4850111019872 8.03491252704032 7.85213916265047 8.41759855384897 8.03288985492126 6.8353747881718 7.35211934501882 7.56090917599234 7.60802590372738 7.3138824010539 7.36321676912791 8.0292858436288 7.90714633871184 7.69248607257137 7.20042476442319 7.57348052762747 0.192433564779628 0.185785409322388 0.185405416229077 0.185689397709313 0.191084130306267 0.188741277321374 0.199155756918883 0.191012697307079 0.207532911139216 0.190006699422953 0.186240470810088 0.194533324345455 0.198353947944416 0.192896188636096 0.19746548487216 0.184898527603962 0.186351314316106 0.212020901301906 0.18950409428736 3 3 - 9236833 9237615 9237271.636 9236433 9237844 - gene protein_coding_gene FALSE TRUE AT3G25480.1 rhodanese-like domain-containing protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G01050.1); similar to rhodanese domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82378.1); similar to Os01g0889800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045047.1); contains domain CHITINASE (PTHR11177:SF3); contains domain Rhodanese/Cell cycle control phosphatase (SSF52821); contains domain CHITINASE (PTHR11177); contains domain no description (G3D.3.40.250.10) 0.0727788488244794 0.800030506252949 0.445729038323563 1 1.09439599087422 15.2758567318203 0.0727788488244794 0.0881113380288292
AT1G57770_at 7.43929046622826 7.35090013169692 7.2902545461193 7.30208876535973 7.41787283680329 7.23411550301834 8.15480497806407 7.77065455036234 7.22536493904981 7.9156922511298 7.54177980550885 8.1461079936874 8.07787995077525 8.23723734273443 7.75028061399917 8.8481375125775 8.48812297254024 8.14669045775346 7.8096597641571 0.176254441875314 0.167664568160664 0.176634288763149 0.181394807322416 0.171099461013742 0.170501238965843 0.173259240474162 0.16989836436478 0.189379846670235 0.173754448334269 0.171517838098343 0.163498352186885 0.174238141248321 0.177169893557720 0.169452587077688 0.166085436000495 0.178598026284656 0.177623299791787 0.171725023969011 1 1 + 21401034 21401768 21401500.727 21398861 21401945 + gene protein_coding_gene FALSE TRUE AT1G57770.1 amine oxidase family similar to CRTISO (carotenoid isomerase), carotenoid isomerase [Arabidopsis thaliana] (TAIR:AT1G06820.1); similar to Amine oxidase [Anabaena variabilis ATCC 29413] (GB:YP_321390.1); similar to Os03g0841900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051855.1); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Phytoene dehydrogenase-related protein; (InterPro:IPR008151) 0.0682304888277014 0.799784731374435 0.445863852158747 1 1.09420514744852 15.3973820051945 0.0682304888277014 0.0752919474251897
AT1G14030_at 8.00755150423713 7.78935140797795 7.74891014432753 6.94404126995226 8.40040961506442 7.6058240958108 8.40519488987937 7.52384922893176 8.02446467645388 8.33818295269548 8.2480054528017 8.42839832070463 8.0359374294938 8.09836172762603 8.56031478909745 8.37135687815301 8.28146347260525 7.84182729571776 8.45921634843254 0.147991993135999 0.145405608684307 0.148302785216902 0.150733296090413 0.149659331376253 0.152190484029318 0.145675446544774 0.148388756301685 0.158981657257057 0.148688813142133 0.146223799076354 0.143981021246091 0.143055807996646 0.153049558666961 0.143055807996646 0.145148991571814 0.150193971081211 0.153624437521745 0.143055807996646 1 1 - 4805604 4806137 4805922.091 4805303 4807514 - gene protein_coding_gene FALSE TRUE AT1G14030.1 ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative Identical to Probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor (EC 2.1.1.127) ([Ribulose- bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) (RBCMT) [Arabidopsis Thaliana] (GB:Q9XI84); similar to SET domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G07670.1); similar to Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor ([Ribulose-bisphosphate carboxylase]-lysine N-methyltransferase) (RuBisCO methyltransferase) (RuBisCO LSMT) (rbcMT) (GB:P94026); contains InterPro domain Rubisco methyltransferase; (InterPro:IPR011192); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214) -0.148718482443408 -0.799750747677304 0.445882495258533 1 1.09417876313173 16.0567229345071 -0.148718482443408 0.250992599009414
AT4G39660_at 7.28975347371792 7.47630077885966 7.19094323537721 7.15927508226246 7.34316247199146 7.02606825984813 7.595690834206 7.4541154018023 6.83818787824552 7.27727098824298 7.24374077600126 7.40275609625689 7.00883502637196 7.23455807460243 7.28331191486711 7.27602798097374 7.23032867865165 6.97501076297268 7.07864331865686 0.198157987893499 0.201471094914598 0.198157987893499 0.20474741327868 0.205561210408263 0.210071172196812 0.20942611792071 0.198157987893499 0.208028080513664 0.211685783518966 0.205347513626113 0.204894207397594 0.198157987893499 0.218141088344551 0.205495935685062 0.203637190611446 0.208033665323046 0.206868038100474 0.201887713788763 4 4 + 18408245 18409227 18408642.091 18406763 18409558 + gene protein_coding_gene FALSE TRUE AT4G39660.1 AGT2 (ALANINE:GLYOXYLATE AMINOTRANSFERASE 2); alanine-glyoxylate transaminase alanine:glyoxylate aminotransferase 2 homolog (AGT2) mRNA, Identical to Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial precursor (EC 2.6.1.44) (Beta-alanine-pyruvate aminotransferase 1) (AGT2) [Arabidopsis Thaliana] (GB:Q940M2;GB:Q9SU41;GB:Q9SWE2); similar to alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putative [Arabidopsis thaliana] (TAIR:AT3G08860.1); similar to Peptidase S1 and S6, chymotrypsin/Hap; Aminotransferase class-III [Medicago truncatula] (GB:ABE94503.1); similar to Os03g0171900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049115.1); contains InterPro domain Aminotransferase class-III; (InterPro:IPR005814) -0.0659912121606141 -0.79974320838525 0.445886631306487 1 1.09417290989319 14.4526746383676 -0.0659912121606141 0.068437619506043
AT1G10150_at 9.56586416121943 9.87648323557247 10.1974649942112 10.3212822945989 10.5931603021903 10.3541595375237 10.3779509497633 10.4074873194824 9.97134995060262 9.8431553941984 9.71126822483823 9.4309127310682 10.1002234391340 9.6891676447189 8.84265163148935 10.1625909079880 10.1611076307529 9.88014749537374 9.95464411459966 0.0967853315728606 0.097307673132986 0.104252569380889 0.096643148684931 0.100821752365298 0.0973491494029878 0.0969937627299218 0.097794633204156 0.103614964233600 0.0955607616741797 0.09775997400141 0.0942221703794003 0.096131254673381 0.101215666039421 0.105988124378802 0.0938701097179777 0.0969513713553536 0.0938701097179777 0.098665961569794 1 1 + 3326910 3327372 3327148.364 3325826 3327616 + gene protein_coding_gene FALSE TRUE AT1G10150.1 ATPP2-A10 (Phloem protein 2-A10) similar to CF9 [Arabidopsis thaliana] (TAIR:AT1G59510.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85053.1); similar to Os03g0769900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051400.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87321.1); contains InterPro domain Growth factor, receptor; (InterPro:IPR009030) 0.0668896294958969 0.799477420263332 0.446032458971568 1 1.09396659137819 20.0468858658055 0.0668896294958969 0.0713121074806277
AT4G16120_at 4.9877898077442 4.65001489610056 4.76922800375387 4.62726435021156 4.27183836639261 5.33293064535829 4.89371259367114 4.90509569705846 5.21868271444961 4.95653718415277 6.0043601228488 5.27633460154641 5.42026680043496 5.42032369209773 5.56087979221843 4.72660285668276 5.1456843143724 5.43307916498909 4.89883995575226 0.211018394112463 0.198232242053894 0.213610196594800 0.204903358449611 0.204323682514540 0.199130336182092 0.202711073171735 0.197606503225395 0.206688189357295 0.206172529405598 0.198465758430712 0.19925843580801 0.197787431308427 0.211061553803247 0.196541951219340 0.205827782494334 0.204191367458999 0.201748137882864 0.201467694750745 4 4 - 9116642 9117174 9116884.636 9116313 9119325 - gene protein_coding_gene FALSE TRUE AT4G16120.1 ATSEB1 putative membrane-anchored cell wall protein Identical to COBRA-like protein 7 precursor (COBL7) [Arabidopsis Thaliana] (GB:Q8GZ17;GB:O24605); similar to phytochelatin synthetase-related [Arabidopsis thaliana] (TAIR:AT3G20580.1); similar to phytochelatin synthetase-related [Arabidopsis thaliana] (TAIR:AT3G16860.1); similar to COBL9/MRH4/SHV2 (COBRA-LIKE 9), hydrolase, hydrolyzing O-glycosyl compounds / polysaccharide binding [Arabidopsis thaliana] (TAIR:AT5G49270.1); similar to Phytochelatin synthetase-like conserved re (GB:ABE84746.1); similar to roothairless 3 [Zea mays] (GB:AAQ81633.1); similar to Os03g0301200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049863.1); contains InterPro domain Carbohydrate-binding; (InterPro:IPR008965); contains InterPro domain Phytochelatin synthetase-like conserved region; (InterPro:IPR006918) 0.119958446408052 0.79878653746344 0.446411670407412 1 1.09343056480317 10.0037983131699 0.119958446408052 0.19427588341029
AT3G16230_at 6.78322935408852 6.51154913275906 7.0516336443501 6.9985944621986 7.36568447173292 6.92628980898566 7.04827951199974 6.66582345375212 5.6950087699433 6.71269238810844 6.00773548857644 5.73824481444755 6.07125083497368 6.2655276721253 5.7200129760778 6.75178851306835 6.61975075185202 6.1189992028122 6.58612239988336 0.187010695505359 0.193920185203907 0.184765891931108 0.191186245659109 0.188024664347299 0.193367269856540 0.193125589077295 0.187410732394256 0.197466829351515 0.192983362338988 0.185322138377875 0.183303326006310 0.187042108444574 0.188543157360290 0.191366994523245 0.183303326006310 0.189133727817529 0.186259109186754 0.191650683919452 3 3|0 +|/ 5502280 5503269 5502855.667 5500559 5503549 + gene protein_coding_gene FALSE TRUE AT3G16230.1 nucleic acid binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G16220.1); similar to KH, type 1 [Medicago truncatula] (GB:ABE80928.1); similar to Os01g0231900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042499.1); contains InterPro domain Appr>p cyclic nucleotide phosphodiesterase; (InterPro:IPR009097); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.081859748048466 0.798458011308062 0.446592068075024 1 1.09317581342573 13.1653546305100 0.081859748048466 0.111612021477784
AT1G24510_at 9.50378667582288 9.51338112608927 9.31249424537846 9.34304147622828 9.56464848205 9.0366083341193 9.47868429120392 9.2741244853609 8.81663210984253 9.09358859711991 9.16115681359906 9.3260850085682 9.08117537277564 8.93221654462284 9.21595384097626 9.07266247054146 8.71294853673565 8.47436787603879 9.15461907396298 0.115320629264851 0.115577111168938 0.117196808335490 0.113729556266022 0.113964644429336 0.117636853130498 0.117814228763808 0.112085878837285 0.121187719751275 0.114942989054603 0.113055443748007 0.112085878837285 0.118812066893535 0.116030643021789 0.115783499341245 0.115572432847825 0.119671603300309 0.135390456501967 0.112085878837285 1 1|0 -|/ 8685497 8686508 8685943.6 8685294 8688235 - gene protein_coding_gene FALSE TRUE AT1G24510.1|AT1G24510.2 T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) (GB:P54411); similar to T complex protein (GB:2206327A); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) (GB:P40412); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain Chaperonin Cpn60; (InterPro:IPR001844); contains InterPro domain T-complex protein 1, epsilon subunit; (InterPro:IPR012718)|Identical to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) [Arabidopsis Thaliana] (GB:O04450); similar to chaperonin, putative [Arabidopsis thaliana] (TAIR:AT3G18190.1); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K36) (GB:P54411); similar to T complex protein (GB:2206327A); similar to T-complex protein 1 subunit epsilon (TCP-1-epsilon) (CCT-epsilon) (TCP-K19) (GB:P40412); contains InterPro domain Chaperonin TCP-1; (InterPro:IPR002194); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain GroEL-like chaperone, ATPase; (InterPro:IPR008950); contains InterPro domain T-complex protein 1, epsilon subunit; (InterPro:IPR012718) -0.0764192312507304 -0.798186033182436 0.446741451784102 1 1.09296497885126 18.387688173677 -0.0764192312507304 0.0981536242218804
AT2G39390_at 7.43272862037331 7.34457928873329 7.44429535197882 6.99699598997428 7.36706911607698 6.85286031797872 7.27947922333415 7.59457798632883 6.92140746898041 7.32417343577784 7.53668603198839 7.9774322420804 7.01622328246899 7.10771858652679 7.8042486057298 7.12268503651377 6.18073636452942 6.70819025660287 7.09730872907854 0.194123802008568 0.188146344347107 0.189628391192853 0.191797661842693 0.183120222397519 0.186753613569861 0.184484291884097 0.184917128891500 0.208428609077333 0.18871749052618 0.189827078526113 0.189791928504625 0.199641131684842 0.184124828639830 0.194134841796577 0.188806088436894 0.191632355210779 0.190221756953761 0.189024635103185 2 2|0 -|/ 16457881 16458708 16458397.889 16457738 16458956 - gene protein_coding_gene FALSE TRUE AT2G39390.1 60S ribosomal protein L35 (RPL35B) Identical to 60S ribosomal protein L35-2 (RPL35B) [Arabidopsis Thaliana] (GB:O80626); similar to 60S ribosomal protein L35 (RPL35D) [Arabidopsis thaliana] (TAIR:AT5G02610.1); similar to 60S ribosomal protein L35 (GB:Q9M5L0); contains InterPro domain Ribosomal protein L29; (InterPro:IPR001854) -0.0900462897487035 -0.798097369531007 0.446790157496102 1 1.09289626091374 14.4370915345560 -0.0900462897487035 0.130830349331760
AT2G35470_at 5.12605608140786 5.7656871374124 4.85495932962406 5.04257756119524 5.36711426518019 5.77187989359875 5.93416564712104 6.15016777621665 6.20197696896366 5.51977286138522 6.89938948128289 6.23087953576604 6.30430136160401 6.50117993219626 5.75128434919846 5.97170892206453 5.28397719151492 6.06809469728182 5.76639696712017 0.206410823772653 0.202650140667434 0.209489307966025 0.197553833437280 0.205179109168387 0.205048664150001 0.215251045515372 0.199032507154283 0.199325157547939 0.207857397786283 0.201570133684438 0.195667158804040 0.200136951648513 0.207341719754618 0.195667158804040 0.195667158804040 0.201046116558979 0.198813829334629 0.199515756759976 2 2|0 -|/ 14916128 14916762 14916519.9 14915923 14916942 - gene protein_coding_gene FALSE TRUE AT2G35470.1 similar to unknown [Solanum tuberosum] (GB:ABC01887.1) -0.0939583650496651 -0.796444874378309 0.447698580680676 1 1.09161669727104 11.4794430613128 -0.0939583650496651 0.140037542929177
AT2G35490_at 10.2254905016735 10.3640589980252 10.3654626596069 10.4181710578510 10.4439925393362 10.1125315667051 10.6524057837275 10.7337227180637 10.6160188612871 10.6210318481394 10.6367892373690 10.5174648680577 10.5155688630409 10.5668199648878 10.6006476516664 10.7618690198316 10.4465633411778 10.6339845825207 10.4276234184651 0.0729051573961449 0.0718137869518344 0.0771651446995492 0.0756653745850711 0.0714726613801344 0.0816025534744026 0.0817653338033667 0.0719787422618861 0.077466105115488 0.0728028664950317 0.0718206181299391 0.0714726613801344 0.0729569410740008 0.0770799787176486 0.0738424041015733 0.0714726613801344 0.0798878784175821 0.0726071843800395 0.0734236509209022 2 2|0 -|/ 14919412 14920301 14919838.5 14919223 14920956 - gene protein_coding_gene FALSE TRUE AT2G35490.1 plastid-lipid associated protein PAP, putative Identical to Probable plastid-lipid-associated protein 3, chloroplast precursor (AtPap3) (Fibrillin-3) (PAP3) [Arabidopsis Thaliana] (GB:O82291;GB:Q94B19); similar to FIB (FIBRILLIN), structural molecule [Arabidopsis thaliana] (TAIR:AT4G04020.1); similar to plastid-lipid associated protein PAP3 [Brassica rapa] (GB:AAK57563.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.0644039896962763 -0.795596852191173 0.448165245750738 1 1.09096093039142 20.9844068866401 -0.0644039896962763 0.0643935970621882
AT2G47710_at 10.9116087362383 11.1890207042163 11.4057323191562 11.5970412549973 11.3983773986201 11.3846881526274 11.3966321934026 11.6311719893897 11.2324828877679 11.1362292660862 11.0543364492710 10.9469531965950 11.2084023906172 11.0986256791953 10.8366790907761 11.3892635092989 11.3294782685670 11.1405822998651 11.1021207672679 0.0817063462994462 0.0766185329414292 0.0789795066978416 0.079098508847779 0.0781635561748101 0.0766185329414292 0.0781029691965617 0.0780995904529555 0.0858329740144472 0.077255891293655 0.0793840758336627 0.0771294932647593 0.0767086957208948 0.0793888946694153 0.0776697301201205 0.0770072106490645 0.0847384109795092 0.0769044898392756 0.0791548040775652 2 2|0 -|/ 19562146 19562985 19562644 19561904 19563135 - gene protein_coding_gene FALSE TRUE AT2G47710.1 universal stress protein (USP) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G49050.1); similar to fiber protein Fb19 [Gossypium barbadense] (GB:AAR07598.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.0664735895105382 0.795360808004458 0.44829519875362 1 1.09077850554557 22.5055263023629 0.0664735895105382 0.071090051333778
AT3G58580_at 5.58366768634182 5.63836230348137 5.37182816819186 4.93420635932908 5.55704612124596 5.42332596440972 5.5695387594725 5.76402427416234 5.4687531081113 5.2884025409425 5.75595949900965 5.91363686230150 6.12316181757062 5.77855221767077 5.61851637115283 5.86283724319656 6.00677350874753 5.39742710495409 5.28177421309888 0.229502115826432 0.230037456125466 0.228369369793447 0.230792067091966 0.222824127330319 0.224180207457803 0.224165922361139 0.222824127330319 0.235059342409576 0.235468900949572 0.222824127330319 0.232327458789211 0.222824127330319 0.227051830539863 0.234274543761592 0.222824127330319 0.234987084613860 0.228732674460968 0.231601374528608 3 0|3 /|- 21671854 21672568 21672213.111 21671575 21675067 - gene protein_coding_gene FALSE TRUE AT3G58580.1 hydrolase similar to endonuclease/exonuclease/phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G58560.1); similar to Endonuclease/Exonuclease/phosphatase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94166.1); similar to Os10g0412100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064587.1); similar to Os03g0166800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049077.1); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.0717507607270982 0.794936829704882 0.448528681752227 1 1.09045095297252 11.0569589706425 0.0717507607270982 0.0865636734548286
AT1G32150_at 6.06731351281199 6.1140497394532 5.8676572277757 5.96425537703104 6.17943699392366 6.40911198914334 6.05780316416417 6.31078202121228 5.06207438121074 5.05658834361326 5.18187249243943 5.55744960257573 5.53433314195416 5.3503895063843 5.38118050043685 5.28090417069125 5.32926862894408 4.85322610039891 5.32923984334496 0.195727443749237 0.198876783119066 0.194987237495791 0.19402370175711 0.198259557634156 0.199543313621151 0.199118323325112 0.199596071397085 0.200099291762555 0.202280494761369 0.194291343335782 0.19402370175711 0.196087903412633 0.19402370175711 0.19402370175711 0.19402370175711 0.205728953806247 0.200095350019121 0.19402370175711 1 0|1 /|+ 11567522 11568217 11567698.333 11565498 11568511 + gene protein_coding_gene FALSE TRUE AT1G32150.1 bZIP transcription factor family protein similar to bZIP transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G35530.1); similar to G-Box binding protein 2 [Catharanthus roseus] (GB:AAD42938.1); contains InterPro domain Eukaryotic transcription factor, DNA-binding; (InterPro:IPR008917); contains InterPro domain bZIP transcription factor, bZIP_1; (InterPro:IPR011616); contains InterPro domain G-box binding, MFMR; (InterPro:IPR012900); contains InterPro domain Basic-leucine zipper (bZIP) transcription factor; (InterPro:IPR004827) 0.0634527247398983 0.79268838684669 0.449768258276494 1 1.08871635973727 11.3502406902066 0.0634527247398983 0.0619778270777145
AT3G07270_at 7.36176065095697 8.08765174532254 7.41814278354039 7.76070096259856 8.0304302427818 7.8791626192996 8.31195003018786 8.00675318771484 7.31375265907881 7.25452899530497 7.66665091453543 7.89517411734347 7.26302884368518 7.87034651959537 8.04473343737744 8.09942013902129 7.69125578365846 7.21825574469932 7.48760975093668 0.202815958252042 0.191581147810178 0.20100739896011 0.194340971880410 0.191366653486541 0.196978102519828 0.189400558955101 0.195056230631397 0.207088818457993 0.204013160681129 0.19280537443383 0.189400558955101 0.190162229379648 0.201041647913111 0.195460477718836 0.192579061617048 0.199105050019938 0.204450666700188 0.191416989476441 3 3 + 2316530 2316974 2316754 2314004 2317194 + gene protein_coding_gene FALSE TRUE AT3G07270.1|AT3G07270.2 GTP cyclohydrolase I similar to GTP cyclohydrolase I [Lycopersicon esculentum] (GB:AAL49957.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain GTP cyclohydrolase I; (InterPro:IPR001474) 0.0983623171127748 0.792068779574433 0.450110255232617 1 1.08823909013647 15.3923550224318 0.0983623171127748 0.150894437655622
AT1G66180_at 6.71263258515286 7.21230936935051 5.90373066815966 6.11382468181809 7.03804247848865 6.93806679162502 7.02257865796089 7.70322172274203 7.92260395621054 7.87031663696694 9.14860041835662 8.35908394756278 8.77300189790192 8.97748398895305 8.21077359890034 8.04971635431856 7.86535390156453 8.33093551451045 8.19906446565751 0.17035820090704 0.167103110684028 0.177773376157132 0.166971646558154 0.162353427270810 0.170007578549221 0.164885917361121 0.173830458088986 0.178971039259696 0.172521777461902 0.175649581825716 0.167126031874731 0.162642766083217 0.174578101627103 0.168499910241757 0.166114257269245 0.175581526411419 0.165847434792737 0.175025418202725 1 1 + 24651595 24652134 24651847 24650851 24652476 + gene protein_coding_gene FALSE TRUE AT1G66180.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G37540.1); similar to Os01g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044781.1); similar to Aspartic proteinase nepenthesin-1 precursor (Nepenthesin-I) (GB:Q766C3); similar to Os03g0271900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049694.1); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.0986145394825875 -0.791616224329394 0.450360157022143 1 1.08789069785547 15.0613993972640 -0.0986145394825875 0.151567287576077
AT3G49590_at 7.40417899020864 7.55935039975986 7.62561265504063 7.56561152031057 8.02520940711196 7.67890972417166 7.05635600555203 6.9368047452156 7.60839084033956 7.46276110196288 6.94518874316772 7.02972373692371 7.36588479973722 7.30661109889195 7.05023626342574 7.19575802406463 7.0827386852953 6.92109442350953 7.3251486925761 0.181808250138632 0.169024500291644 0.176838221116197 0.165736224545708 0.174462387832488 0.19142716984202 0.174324180052963 0.172114355977175 0.178184486517716 0.171127975499004 0.174238839828360 0.178051981491223 0.179524777545051 0.169162927444441 0.174349391321554 0.165461819852411 0.190815222826315 0.175166324661261 0.175186121075596 3 3 + 18390092 18390915 18390568.909 18388545 18391269 + gene protein_coding_gene FALSE TRUE AT3G49590.1|AT3G49590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18770.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE83766.1) 0.0656921091960676 0.791572424130719 0.450384348517028 1 1.08785698798914 14.7702981893396 0.0656921091960676 0.0696304266059474
AT1G79790_at 9.08615535684905 9.04462293612267 8.86294302594412 8.78726754516457 8.8919836830735 9.02710609478026 9.02488788785982 9.04627645315596 9.32972145159386 9.43862329704244 9.5196152580222 9.62520231540614 9.15570428854017 9.34787273407688 9.55903325401484 9.49589357730713 8.93885221268584 9.2880351148271 9.18989508567478 0.104398364516126 0.102982166831303 0.101843396478604 0.101380467061729 0.101377998160593 0.108552060402882 0.116172205575722 0.103629345355536 0.115088113519457 0.100286820042989 0.0985726053526906 0.103138803192212 0.106529957222560 0.106962239740556 0.106443610879658 0.09793727582753 0.106191068154362 0.110153827368046 0.102938585983041 1 1 - 30021885 30022900 30022251.818 30021261 30023124 - gene protein_coding_gene FALSE TRUE AT1G79790.1|AT1G79790.2 haloacid dehalogenase-like hydrolase family protein similar to HAD-superfamily hydrolase, subfamily IA, variant 3, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96430.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834)|similar to HAD-superfamily hydrolase, subfamily IA, variant 3, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96430.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.0556488774999593 -0.790840907017191 0.450788505297399 1 1.08729422674068 18.3142500591006 -0.0556488774999593 0.0279938357325985
AT1G18170_at 7.2158738129521 7.18520047956923 7.17650360010036 7.19310105288625 7.47051535943923 7.21629108395107 7.51988769576641 7.68704003765894 7.3562337210556 7.68971775209104 7.81257335165354 7.46717451819472 7.77397399772035 7.8173751141085 7.73204195546029 8.09450104085948 7.60214389276357 7.4244322690395 7.32198559680347 0.147150639324629 0.147484440783731 0.157690422848346 0.159478066573367 0.151022548051125 0.175026514492333 0.154834160455990 0.15363556846737 0.163045386942316 0.160889672132401 0.146604330768295 0.149539194394706 0.160289397345927 0.156306187542675 0.153546882572364 0.147908911430627 0.166667089468532 0.160040284072701 0.169096253657256 1 1 + 6254431 6255474 6254987.818 6254222 6255683 + gene protein_coding_gene FALSE TRUE AT1G18170.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein similar to immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein [Arabidopsis thaliana] (TAIR:AT1G73655.1); similar to hypothetical protein MtrDRAFT_AC139526g24v1 [Medicago truncatula] (GB:ABE80155.1); similar to Os03g0708500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051037.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) 0.0608251308829231 0.79081298628414 0.450803936083579 1 1.08727275590914 14.9188046606863 0.0608251308829231 0.0529971866729618
AT1G09250_at 5.59914438388582 5.47860379534568 4.33863900421728 4.21042879626831 5.69700090925498 4.9117819543644 4.8721702228887 4.82806309401198 5.73355507216029 4.26797896553788 5.77037088294058 5.67706210861809 6.414413970466 5.71309805449939 5.82180092906262 5.94545970307322 5.78153609932451 5.41895687847448 5.67911944817519 0.209068090357162 0.213906000097593 0.21801728086589 0.213349099843159 0.215327756900115 0.211692911363521 0.218443995794764 0.210548368623565 0.231261711595215 0.216050971610478 0.229153287908444 0.209645741142424 0.209068090357162 0.21918116401392 0.221229803105052 0.209068090357162 0.215168954717929 0.219218147864386 0.216348814768940 1 1 + 2989594 2990064 2989806.818 2989380 2990359 + gene protein_coding_gene FALSE TRUE AT1G09250.1 transcription factor similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G06590.2); similar to Os03g0311600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049922.1); similar to bHLH protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC21355.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0929600625047214 0.790146991717328 0.451172112534888 1 1.08676080265743 10.5143399318289 0.0929600625047214 0.139465540226703
AT1G71970_at 7.85115949805006 8.32368021762932 7.90165063037596 8.23027792459735 8.6817754019629 8.29474271787226 8.02420342252282 8.37316946492736 8.61378305298777 8.19986839948658 8.6299632839477 8.32552180544487 8.68647317193336 8.67756691338847 7.97341081224448 8.86738924421491 8.40199947442706 8.2149902456502 8.46131990229786 0.114903360795209 0.119026134980125 0.12214518565635 0.116691102344864 0.118056546818854 0.117894582450043 0.120771329554463 0.120886290361596 0.125252053045583 0.117626672945349 0.122943685456326 0.120911676373005 0.120366792665001 0.122789146915477 0.120656913156380 0.121852897204218 0.125028533196136 0.118400792963363 0.117411660608186 1 1 + 27096951 27097397 27097188.364 27096690 27097689 + gene protein_coding_gene FALSE TRUE AT1G71970.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22680.1); similar to Os12g0174300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066287.1) 0.0906162176176848 0.789426926408261 0.451570407598566 1 1.08620769866652 16.6586598199908 0.0906162176176848 0.134364808255129
AT4G23400_at 10.4112641308065 10.5293282895305 10.7799301532778 10.8651706250640 11.0742965037963 10.9248670736736 10.7353099246846 10.8937240934559 12.3276313592707 11.5079035559439 12.3494070318530 11.6885790176119 11.8274432094869 11.8943534210381 11.6362979075412 11.768457598248 11.1070980664336 12.1453035658030 12.0240897113709 0.0742045694905916 0.0708124171577436 0.0804865321084242 0.0752268418353102 0.0717463296886997 0.07311105962219 0.0715249543469492 0.0723342639494152 0.078298213850906 0.0729771287191763 0.0708124171577436 0.0713915431843809 0.0721860913926052 0.0736100248376762 0.0730658562129831 0.0715137234548365 0.0797585717636106 0.0735814974303408 0.0717295312809487 4 4 + 12221426 12222137 12221755.636 12220753 12222380 + gene protein_coding_gene FALSE TRUE AT4G23400.1 PIP1;5/PIP1D (plasma membrane intrinsic protein 1;5); water channel Identical to Probable aquaporin PIP1.5 (Plasma membrane intrinsic protein 1d) (PIP1d) (PIP1.5) [Arabidopsis Thaliana] (GB:Q8LAA6;GB:O81736); similar to TMP-C (plasma membrane intrinsic protein 1,4), water channel [Arabidopsis thaliana] (TAIR:AT4G00430.1); similar to PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1,3), water channel [Arabidopsis thaliana] (TAIR:AT1G01620.1); similar to plasma membrane aquaporin (PAQ1) [Raphanus sativus] (GB:BAA32777.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.0587843738618226 0.788567242421428 0.452046239959369 1 1.08554791252714 22.6543991923431 0.0587843738618226 0.0453354626066667
AT2G33220_at 9.24146039476788 9.36425924734432 9.33820760787718 9.31319285973657 9.36209084976525 9.20408113087167 9.40153675885382 9.61797572770833 9.2993830399486 9.30571428391102 9.65007955132953 9.57586313872665 9.44502051515395 9.58392926183456 9.47857848474356 9.5600524711632 9.23619088148247 9.43243294735389 9.21392073435016 0.119732527780951 0.115944914258811 0.119615670542320 0.110274084070912 0.112950212663979 0.116911933063415 0.117886937094915 0.114837530805124 0.115785937900727 0.116542781734166 0.118596166693754 0.110274084070912 0.111410145108022 0.119072445329461 0.11449652672864 0.112147457548035 0.120085335810966 0.113700448968451 0.114064631392351 2 2 + 14086113 14086950 14086466.455 14085928 14087234 + gene protein_coding_gene FALSE TRUE AT2G33220.1 similar to MEE4 (maternal effect embryo arrest 4) [Arabidopsis thaliana] (TAIR:AT1G04630.1); similar to F6 [Gossypium hirsutum] (GB:CAC84110.1); contains InterPro domain GRIM-19; (InterPro:IPR009346) 0.0601737334821475 0.788322807367712 0.452181595379005 1 1.08536042664596 18.739487785054 0.0601737334821475 0.0511955817466731
AT1G20890_at 5.15450043956725 5.54531253979547 5.26930247636096 5.26474034919686 5.88639517807907 4.75539617936108 4.34785872362729 4.29685408709541 4.60265183876011 4.57323427096291 4.57474724822115 4.23497619761566 4.43307644267196 4.75175005120305 4.62163379863512 4.67996473694805 4.25165416988143 4.24730183906918 4.87233122758388 0.225138155187235 0.223316612594317 0.226839335302912 0.226435141463365 0.228279495482712 0.236011538878530 0.213472311096665 0.218588890924021 0.226188894421932 0.225973747622547 0.228268109446488 0.213303873596065 0.221106950171234 0.224144537330005 0.213666787613137 0.220074621963959 0.222585027120156 0.213303873596065 0.223222347052518 1 1|0 -|/ 7266141 7267006 7266533.4 7265812 7267312 - gene protein_coding_gene FALSE TRUE AT1G20890.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G76480.1); similar to Fibronectin, type III-like fold [Medicago truncatula] (GB:ABE92861.1) 0.124738023161603 0.788320125812922 0.452183080435303 1 1.08535837012237 9.6436085831186 0.124738023161603 0.207269725799586
AT4G24740_at 8.98576984504172 8.74853133711138 8.93944801759044 8.78694621405577 9.33199278151474 9.05664335902935 9.13958969978402 8.95967985541508 9.07275833767139 9.14571228589344 8.96383790180137 8.98258704300942 8.98573026156236 8.96987793919645 8.7552822113674 9.10836003875952 8.7273464480702 8.59075226317098 9.0516230816753 0.102655893600130 0.105640701255084 0.107601930026413 0.104307578898323 0.108954576750016 0.113075498587760 0.108706666847017 0.104441695581449 0.111603825624418 0.107665226034894 0.103174733658239 0.101695357270043 0.110970375932036 0.104792010329815 0.107458371051955 0.104300186128475 0.119806381302140 0.109189150500221 0.106806741532342 4 4|0 -|/ 12754746 12755519 12755033.667 12754539 12757796 - gene protein_coding_gene FALSE TRUE AT4G24740.1|AT4G24740.2 AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1); kinase a LAMMER-type protein kinase that co-precipitates with serine/arginine-rich (SR) proteins in vitro, interaction modulated by phosphorylation of the proteins. Identical to Serine/threonine-protein kinase AFC2 (EC 2.7.12.1) (AFC2) [Arabidopsis Thaliana] (GB:P51567); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase MK5 [Mesembryanthemum crystallinum] (GB:AAF40430.1); similar to PK12 protein kinase [Nicotiana tabacum] (GB:AAC04324.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|Identical to Serine/threonine-protein kinase AFC2 (EC 2.7.12.1) (AFC2) [Arabidopsis Thaliana] (GB:P51567); similar to AFC1 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT3G53570.4); similar to protein kinase MK5 [Mesembryanthemum crystallinum] (GB:AAF40430.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.067097281501654 -0.787712196871462 0.452519838460617 1 1.08489229457996 17.9813266379164 -0.067097281501654 0.0749795686118078
AT4G33240_at 6.67852026471621 6.78900138146083 7.09888026980239 6.78321493686528 7.416417969212 7.05801268181745 6.75394771893865 7.11058582514155 6.84926823105888 7.04693066666855 6.85823911794438 6.77768370399809 7.02567831009619 7.08854710057698 6.27914908437067 7.17865761464085 7.00464180562986 6.83448448299184 7.0469852662547 0.175712738141417 0.171545252873858 0.174057961027579 0.182051461082166 0.170049148218747 0.175742489997583 0.177486186563697 0.172504240647885 0.181582316542755 0.161241943363063 0.173433658059032 0.165644331359213 0.162858520510245 0.177375465402527 0.181477680250223 0.165064943588842 0.172296289732302 0.1676046430645 0.174956466045766 4 4|0 -|/ 16029564 16030109 16029786.8 16029256 16037638 - gene protein_coding_gene FALSE TRUE AT4G33240.1|AT4G33240.2 1-phosphatidylinositol-4-phosphate 5-kinase/ zinc ion binding| similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT3G14270.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G34260.1); similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G71010.1); similar to putative phosphatidylinositol 3,5-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAP12926.1); similar to 1-phosphatidylinositol-3-phosphate 5-kinase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08735.1); similar to Chaperonin Cpn60/TCP-1; Phosphatidylinositol-4-phosphate 5-kinase; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE86459.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Chaperonin Cpn60/TCP-1; (InterPro:IPR002423); contains InterPro domain Phosphatidylinositol-4-phosphate 5-kinase; (InterPro:IPR002498); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.0779707156985172 0.786838168557055 0.453004294941214 1 1.08422274867230 13.8920459012569 0.0779707156985172 0.104908210581962
AT1G68910_at 4.49533823023340 5.07494586945942 4.97281238871751 5.11004630488236 5.45521539244837 4.76042648535447 5.64657856639076 5.55477314409334 5.57252842455332 5.0749937252734 6.0133602427146 5.55503204236183 5.75329201091744 6.07118603898724 5.02961521801012 5.78254816118945 5.13629846649344 5.24442885674132 5.10913246434434 0.199207195376649 0.203793384157532 0.197467417336616 0.212817668551361 0.208086526515228 0.205563369853753 0.201259036740673 0.200353870231448 0.197388016924183 0.201747434942171 0.194398602522531 0.195105227129541 0.213490762470672 0.210091133561275 0.205524754472024 0.192421092809214 0.215196853829918 0.206348353685015 0.200065391175540 1 1 - 25912626 25913019 25912792.7 25911794 25914148 - gene protein_coding_gene FALSE TRUE AT1G68910.1|AT1G68910.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G11390.1); similar to putative protein [Medicago truncatula] (GB:ABE91791.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.101359057629846 0.78567732917755 0.453648262115714 1 1.08333447340099 10.5464862148978 0.101359057629846 0.159166835280717
AT2G15230_at 7.8223583330703 7.76908561570432 7.74597974697186 7.9494497261884 8.58105901075923 8.10882127448517 7.47474232553743 6.99399575519102 7.64674579158877 7.23497302946018 6.86218715670712 6.62835925911812 7.03912653832346 6.96746552869938 6.94577572544732 7.0884638893652 7.12760042014191 7.03716878635408 7.23901622189905 0.165941880254297 0.173975050684976 0.174039326124619 0.176382552862509 0.176558346145326 0.166628614906282 0.168436668073336 0.178897053440030 0.169013742734466 0.173692907512391 0.172846426711082 0.172947219316677 0.165305521963492 0.172114219367492 0.170057202613913 0.169672673383894 0.167438877967615 0.168429591162023 0.168210305500702 2 0|2 /|+ 6620824 6622149 6621639.2 6619663 6622477 + gene protein_coding_gene FALSE TRUE AT2G15230.1 ATLIP1 (ARABIDOPSIS THALIANA LIPASE 1); galactolipase/ hydrolase/ phospholipase/ triacylglycerol lipase Lipase active on medium and short chain triacylglycerols, but not on phospho- or galactolipids. Active between pH4 and 7 with an optimum at pH6. Knock-out mutant has not obvious phenotype. Predicted to be extracellular. Identical to Triacylglycerol lipase 1 precursor (EC 3.1.1.3) (LIP1) [Arabidopsis Thaliana] (GB:Q71DJ5;GB:Q9SKL5); similar to lipase family protein [Arabidopsis thaliana] (TAIR:AT5G14180.1); similar to Os09g0103100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062552.1); similar to OSJNBa0094P09.4 [Oryza sativa (japonica cultivar-group)] (GB:CAE05065.2); similar to lipase [Ricinus communis] (GB:AAY17358.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain AB-hydrolase associated lipase region; (InterPro:IPR006693) 0.0848609987978195 0.785009108112164 0.45401923067632 1 1.08282365799228 14.9734848538229 0.0848609987978195 0.122167738514604
AT3G23750_at 5.66353740430256 6.2294845991786 5.14399972306388 5.0834434268737 4.94930690439899 6.15439120299883 5.74791119678837 6.2921458940838 6.66236607899676 6.15308379231202 7.76205927837464 7.33687795673454 6.81034436022609 6.76397475946788 7.25995540154783 6.32711514241872 5.86035561177863 6.55618224355649 6.60703558134897 0.171215726649208 0.162650421201267 0.175779824824231 0.163867453581743 0.173922360044744 0.169061672545684 0.165133576813924 0.172538312669332 0.174688334368552 0.171864662318634 0.17058475619637 0.170345566148954 0.162307092743052 0.174411246419342 0.171542843795580 0.162381623685571 0.181198345741827 0.163004662420664 0.170555605259891 3 0|3 /|+ 8560899 8561228 8561061.4 8558339 8561435 + gene protein_coding_gene FALSE TRUE AT3G23750.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G24650.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01820.1); similar to TMK1 (TRANSMEMBRANE KINASE 1) [Arabidopsis thaliana] (TAIR:AT1G66150.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to Protein kinase [Medicago truncatula] (GB:ABE90463.1); similar to receptor-like kinase RHG4 [Glycine max] (GB:AAM44275.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.145019091271981 -0.784919998241 0.454068716109157 1 1.08275556683151 12.3124124998689 -0.145019091271981 0.249125569419336
AT3G52420_at 7.26978978509276 7.45379147719556 6.61197227848099 6.86933809640634 7.1538531767483 7.42541315331316 6.21330446015837 7.06457225526151 6.88665081409102 6.3827063268546 6.54028442820818 6.60963785904745 6.47135506997584 6.44902706082666 6.26429075817944 6.17103460302138 6.16211071634354 6.1641562720315 6.4578590150731 0.186908088038706 0.186556024433889 0.192584637104341 0.182021181860417 0.183408608407922 0.195028305480515 0.189178997262973 0.187085928280236 0.192095918395566 0.187405679702204 0.193579141412977 0.183415236311399 0.186743502517050 0.18732829723112 0.187464960012847 0.187403680850401 0.1996574183008 0.191307451789739 0.184441743114672 3 3 + 19440763 19440915 19440829.909 19440713 19441041 + gene protein_coding_gene FALSE TRUE AT3G52420.1 outer envelope membrane protein, putative similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G63160.1); similar to outer envelope membrane protein (GB:AAA63414.1) -0.103485970454255 -0.784687976161126 0.454197581986887 1 1.08257830373181 13.4726172426457 -0.103485970454255 0.164036786620098
AT1G72430_at 6.40337267877998 7.20363797102385 8.32929660317289 8.96033639325984 8.37294964229311 8.34330714009206 9.50264525488142 9.97099627935835 9.84379977531222 9.32201383547635 10.5401660961018 9.37960823791759 10.3787344297001 10.2322218304077 8.61142514886926 10.1944535707593 9.21204792290658 9.28637468826843 10.0101670925899 0.244531043485045 0.234712719724018 0.225115943481234 0.217262219266022 0.218998194522162 0.238039414397010 0.208737299471091 0.210324709745076 0.233785899436526 0.212705839951508 0.211116748084085 0.208493231627613 0.212413648763681 0.216716670953978 0.214409493218559 0.210465491789811 0.223385989655001 0.220901625647736 0.212944770351538 1 1 - 27268814 27269107 27268944 27268573 27269292 - gene protein_coding_gene FALSE TRUE AT1G72430.1 auxin-responsive protein-related similar to auxin-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G17345.1); similar to Os08g0452500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061954.1); similar to auxin-induced protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD36435.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.117680744091877 0.78397292098013 0.454594880013458 1 1.08203228867315 18.1131706912289 0.117680744091877 0.194166030617347
AT3G44190_at 6.91550184396936 7.19144312041831 6.64041979730686 6.87164884093165 6.99357347186439 6.61318485341395 6.90590693238266 6.87225292846857 6.43635079750637 6.8712649025819 7.33341371175413 7.33754239095548 6.95609550265399 7.05912066755526 6.52795074017578 7.05334909529807 6.56133298178549 7.1952750143264 6.69289693525845 0.173159064454194 0.170958901451831 0.171187448466678 0.172268803443843 0.171964517732683 0.172409478153831 0.167462481890048 0.167413536772730 0.190444426439159 0.170262028074911 0.175736159399033 0.168356312524449 0.175574356754264 0.180913858011053 0.170700487503792 0.170866328866301 0.166332808714524 0.171184489575204 0.168014060129071 3 3|0 -|/ 15912991 15913498 15913218.6 15912784 15914595 - gene protein_coding_gene FALSE TRUE AT3G44190.1 pyridine nucleotide-disulphide oxidoreductase family protein similar to pyridine nucleotide-disulphide oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT5G22140.1); similar to Putative pyridine nucleotide-disulphide oxidoreductase, identical [Solanum demissum] (GB:AAU90296.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class-II; (InterPro:IPR000103); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.0723015012584958 0.78391434979523 0.454627433553141 1 1.08198758265332 13.7104152526838 0.0723015012584958 0.0908229640168129
AT1G15780_at 7.84179792575249 8.26819560256327 8.2404674447566 8.35170738042945 8.7604103990398 7.89213961277235 8.39406015035923 8.27869054248593 7.72128982620283 8.01755967601972 8.01073524093957 8.0747623978459 8.26009297690657 8.1576811440442 7.43418296970218 8.18884533963511 7.69594525847562 7.81346160838908 7.8357188848344 0.177313169746227 0.172547469890360 0.175536141473621 0.170657820209860 0.169568930077386 0.179225162690063 0.174571436161028 0.171832790537567 0.178731761766289 0.169168227150785 0.170259165238119 0.170031145702464 0.165910930417167 0.171992289223369 0.181918503976105 0.163884650528872 0.176551046460977 0.183298494411487 0.171230129470054 1 1|0 -|/ 5430479 5431369 5430782.3 5430178 5435916 - gene protein_coding_gene FALSE TRUE AT1G15780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10440.1); similar to Globin-like [Medicago truncatula] (GB:ABE79971.1); similar to Os08g0564800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062533.1); similar to CTV.22 [Poncirus trifoliata] (GB:AAN62354.1); contains domain no description (G3D.1.10.246.20); contains domain Kix domain of CBP (creb binding protein) (SSF47040) 0.105884529299640 0.782938272579612 0.455170161253098 1 1.08124298590788 16.1597600469422 0.105884529299640 0.16968127657419
AT1G18270_at 6.95571056219385 7.20871223597381 7.46690448943036 7.11452609071602 7.34253924863739 7.18645218465459 6.89822449882757 6.51291880038642 6.79344161125262 6.97468303370354 6.54657035251778 6.87610524585685 6.88211218248808 6.9618820480977 6.33053092343836 6.80314266693776 6.96442729779396 6.94631069821949 7.2867519714608 0.159718172796901 0.151497839850072 0.162358375526858 0.160675566300393 0.159359386004659 0.165739636735961 0.153870896678303 0.150097993667495 0.160594407928302 0.154867758558035 0.153770889692806 0.160286435491533 0.156026869429397 0.155112566075226 0.156588640509106 0.154292523999493 0.170045020197799 0.156180554876664 0.150097993667495 1 1|0 -|/ 6283630 6284473 6284056.444 6283405 6293864 - gene protein_coding_gene FALSE TRUE AT1G18270.1 ketose-bisphosphate aldolase class-II family protein similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71170.1); similar to unnamed protein product [Asper (GB:BAE56140.1); similar to Os06g0258900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057323.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain Ketose-bisphosphate aldolase, class-II; (InterPro:IPR000771); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204) 0.0771534752303029 0.782287755780543 0.455532108080639 1 1.08074718212386 13.9893372050480 0.0771534752303029 0.103977491673807
AT1G65260_at 11.4659682509258 11.5076896184576 11.4373500556657 11.4110817220504 11.7216520503343 11.3964369228688 12.0157979638391 11.8444545410538 11.5774861813307 11.6910316983719 11.7866202921904 11.6547070969910 11.6250715033506 11.7655443885474 11.6732318335052 11.8745087657341 11.5653737753270 11.7115860418109 11.5812795071673 0.0779408006039172 0.0787947284594576 0.083224024675121 0.079584281305672 0.0827005901883832 0.0832019879796202 0.0818343799424544 0.077418571051697 0.0943151737995746 0.0825641809440381 0.0802580194765564 0.0781579515369711 0.0794011994938144 0.0809440916458023 0.078867461171507 0.077418571051697 0.0817350474601621 0.084774947944323 0.0813327927650008 1 1|0 +|/ 24240991 24244014 24242635.444 24239921 24244368 + gene protein_coding_gene FALSE TRUE AT1G65260.1 PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4) Identical to Probable membrane-associated 30 kDa protein, chloroplast precursor [Arabidopsis Thaliana] (GB:O80796); similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30) (GB:Q03943); similar to Os01g0895100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045073.1); contains InterPro domain PspA/IM30; (InterPro:IPR007157) -0.063183036306933 -0.781283175196716 0.456091433127283 1 1.07998221433222 23.2618936862188 -0.063183036306933 0.0641830202413457
AT2G28940_at 6.54991444673041 6.56203322661341 5.70304759570504 5.43423679540148 6.49026587377772 5.96674088355056 4.21529588717963 4.04675668894397 5.9308526864047 4.93182437975867 5.12683884187042 5.59979274594628 4.74083925807794 5.69983972922014 4.79996800784893 5.07006743386083 4.26854898260508 4.86443954768557 5.40043586748254 0.234899504804845 0.228361045608002 0.23215010424667 0.230273608191502 0.223544262776478 0.230366246069233 0.230849146762135 0.233706784196201 0.221763979284787 0.224527429382197 0.220456829692610 0.220456829692610 0.224674392675924 0.220456829692610 0.221544167663165 0.220456829692610 0.234144000467567 0.239801490533768 0.224133996537764 2 2 - 12433964 12434574 12434298.091 12433787 12435807 - gene protein_coding_gene FALSE TRUE AT2G28940.1|AT2G28940.2 protein kinase family protein similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G39110.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G09830.2); similar to Os02g0819600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048536.1); similar to protein serine/threonine kinase [Lophopyrum elongatum] (GB:AAF43496.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0776634492913011 0.779562506419714 0.457050522331624 1 1.07867391410376 10.8422011562068 0.0776634492913011 0.105958360299670
AT3G02540_at 8.47509062295957 8.69160919952794 8.01832654107386 8.33429965881024 8.7663630861745 8.81150238468174 8.60435822053458 8.71765276564196 8.7166124843667 8.63258965203783 9.18778405062434 9.09017630246655 9.17333986347034 9.1423612240008 8.94557006187974 8.9141941620325 8.89400130096268 8.99072497323533 8.97107178060156 0.113992662425778 0.107425235193033 0.117481796806325 0.116151770495169 0.109831375371634 0.115005831698587 0.108526251868072 0.111727696770057 0.113346048136483 0.107425235193033 0.107425235193033 0.109051696482770 0.107620044974153 0.113170106855072 0.111490284054467 0.107425235193033 0.113459999578278 0.107425235193033 0.110900902037754 3 3|0 -|/ 533126 534189 533728.125 532815 536349 - gene protein_coding_gene FALSE TRUE AT3G02540.1|AT3G02540.2 ubiquitin family protein Identical to Putative DNA repair protein RAD23-3 (RAD23-like protein 3) (AtRAD23- 3) (RAD23-3) [Arabidopsis Thaliana] (GB:Q84L31;GB:Q9M887); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT5G38470.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96960.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|Identical to Putative DNA repair protein RAD23-3 (RAD23-like protein 3) (AtRAD23- 3) (RAD23-3) [Arabidopsis Thaliana] (GB:Q84L31;GB:Q9M887); similar to DNA repair protein RAD23, putative [Arabidopsis thaliana] (TAIR:AT5G38470.2); similar to hypothetical protein [Cleome spinosa] (GB:ABD96960.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain UV excision repair protein Rad23; (InterPro:IPR004806); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.0646447844255365 0.779195933990376 0.457255020955194 1 1.07839551200425 17.4602471255936 0.0646447844255365 0.069565502828057
AT1G30825_at 5.22159625688880 5.40926172197769 4.71175357291064 4.66699943592187 4.97524517658692 5.2547702864338 5.14495052493205 4.63017530408738 4.56067526365336 4.00363514927974 3.98917708723343 4.48114833824179 4.25696464462861 4.17503501506158 4.55342559228353 4.49714065824352 4.81666496497745 4.14095460138554 4.39619883363589 0.25989549049764 0.255158331136831 0.257673807827212 0.26485802240505 0.252955513254135 0.260237859305434 0.261297472587491 0.259487297784391 0.255635755384409 0.260840413447070 0.254668434908593 0.252955513254135 0.261889272121966 0.262529878838304 0.253944646797069 0.252955513254135 0.257615219706937 0.256542126374731 0.261107947310166 1 1|0 +|/ 10961876 10962679 10962276.111 10960922 10963163 + gene protein_coding_gene FALSE TRUE AT1G30825.1 DIS2 (DISTORTED TRICHOMES 2); structural molecule Involved in trichome maturation. mutant displays enlarged trichomes similar to ARPC2B (actin-related protein C2B), structural molecule [Arabidopsis thaliana] (TAIR:AT2G33385.1); similar to Os04g0512300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053297.1); similar to Actin-related protein Arp2/3 complex, subunit ARPC2 (ISS) [Ostreococcus tauri] (GB:CAL53053.1); contains InterPro domain Arp2/3 complex, 34kDa subunit p34-Arc; (InterPro:IPR007188) -0.0778298600537857 -0.778186543667078 0.45781844146166 1 1.07762948617256 9.34383584077402 -0.0778298600537857 0.106727046198337
AT4G21990_at 9.13807955770442 9.52515898654566 9.61297171480828 9.64967886993125 9.95627641423845 9.2596559051625 10.4659247862457 10.2367617511449 8.6356643606401 9.47748382696227 9.22897246503232 8.80578339103847 9.00011536156025 8.82899739000151 7.6106724319737 8.86235082997421 8.876986876193 8.91708456009065 8.08069540190852 0.149186793080478 0.145837577988835 0.153575577662253 0.145280649420179 0.148486236266660 0.153491975064581 0.148593421091218 0.147050946376282 0.160043185108977 0.147549673060191 0.145280649420179 0.146523611835162 0.145280649420179 0.159473159405300 0.167333416900977 0.148018737833112 0.154949231450402 0.152077289253210 0.154880327818372 4 4 - 11657299 11657846 11657633.909 11657020 11659117 - gene protein_coding_gene FALSE TRUE AT4G21990.1 APR3 (APS REDUCTASE 3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group. Identical to 5'-adenylylsulfate reductase 3, chloroplast precursor (EC 1.8.4.9) (Adenosine 5'-phosphosulfate 5'-adenylylsulfate sulfotransferase 3) (APS sulfotransferase 3) (Thioredoxin-independent APS reductase 3) (3'-phosphoadenosine-5'-phosphosulfate reductase homolog 26) (PAPS reductase homolog 26) (Prh-26) (APR3) [Arabidopsis Thaliana] (GB:P92980;GB:O48887;GB:Q38948); similar to APR2 (5'ADENYLYLPHOSPHOSULFATE REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT1G62180.1); similar to APR1 (PAPS REDUCTASE HOMOLOG 19) [Arabidopsis thaliana] (TAIR:AT4G04610.1); similar to APS reductase [Brassica juncea] (GB:CAA04611.1); similar to adenosine 5'-phosphosulfate reductase [Glycine max] (GB:AAL66290.1); similar to 3'-phosphoadenosine 5'-phosphosulfate reductase (GB:AAC49573.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Phosphoadenosine phosphosulfate reductase; (InterPro:IPR002500); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-independent 5' (InterPro:IPR004508) -0.0933731638228286 -0.777987038335903 0.457929855854698 1 1.07747818233745 18.4793893030910 -0.0933731638228286 0.143643057073105
AT1G33290_at 7.67637774116608 7.5201750052557 7.42582936503448 7.36280834524552 8.05599872314334 7.34978113027134 7.83812076634127 7.86219390336635 7.82598949969162 7.77823729434301 7.95342028965054 8.16626085039096 7.67978914515794 7.9741336717 8.25496022619971 8.22058508272905 7.35559974571746 7.52561866600747 8.05572088123963 0.199030146963833 0.194737325691703 0.207245121141903 0.195949393644815 0.192983425003685 0.223475074774873 0.198782069371533 0.198614583969334 0.215406839243872 0.200307994322961 0.194230542137999 0.192983425003685 0.199672519622517 0.223957779221854 0.195587762852655 0.195327257077237 0.221799784426220 0.211129798615395 0.208802032281989 1 1|0 +|/ 12074987 12075942 12075359.2 12074079 12076084 + gene protein_coding_gene FALSE TRUE AT1G33290.1|AT1G33290.2 sporulation protein-related similar to sporulation protein-related [Arabidopsis thaliana] (TAIR:AT3G10420.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96147.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593)|similar to sporulation protein-related [Arabidopsis thaliana] (TAIR:AT3G10420.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96147.1); similar to Os12g0209000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066391.1); contains domain ATP_GTP_A2 (PS50101); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.0854828642529806 -0.776977725096528 0.458493786737013 1 1.07671323373700 15.5253832148708 -0.0854828642529806 0.125711289835483
AT1G10570_at 5.97327064721418 6.23781534575068 5.94350372326498 5.51950771103062 6.31418780934945 6.08451573244309 6.19500553628651 5.66674489301913 5.8898389653632 5.55520942979899 5.81513728406392 6.32257434836206 5.41945124729506 5.34292051014969 5.91596430632816 5.74477034664112 5.46614440829035 5.90907859174328 6.15109455532294 0.172888247170796 0.169828816132263 0.172868212914803 0.172953013490137 0.170755305059620 0.174806841782845 0.173820805466581 0.173347980246396 0.174150820884792 0.174994656863171 0.170975323326426 0.170357401696323 0.175914391030915 0.174283158318333 0.172848191002727 0.169782857010325 0.172912676995345 0.169297871157252 0.170675650239974 1 1|0 +|/ 3489724 3491058 3490671.6 3487595 3491278 + gene protein_coding_gene FALSE TRUE AT1G10570.1|AT1G10570.2 Ulp1 protease family protein similar to cysteine-type peptidase [Arabidopsis thaliana] (TAIR:AT1G60220.1); similar to Os06g0487900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057669.1); similar to Ulp1 protease family, C-terminal catalytic domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99256.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.0880781073407135 -0.776307591872247 0.458868463634908 1 1.07620581646358 11.7955119817220 -0.0880781073407135 0.131972204396505
AT3G50740_at 8.46018911578342 8.6237377091996 6.45520592777258 6.78841776286617 8.7605832106318 8.31254282582677 6.62364393133339 6.37399028640986 4.94703006473556 6.29765893320531 5.95582017121062 7.1031591430777 6.78574342689145 6.44355707582773 5.62166913651221 5.6393417437577 5.9677471481033 5.95373604636233 7.0106752653463 0.207871984840737 0.208493402837979 0.207871984840737 0.212341609013761 0.218867900289846 0.215198477360978 0.211606791071025 0.210150268703786 0.228432530360696 0.213133292432177 0.213527521174864 0.210598522791119 0.210987248973637 0.207871984840737 0.212123007418007 0.214108644734576 0.228948957895902 0.211041062469425 0.212032898187743 3 3 - 18866353 18866889 18866676 18866142 18867865 - gene protein_coding_gene FALSE TRUE AT3G50740.1 UGT72E1 (UDP-glucosyl transferase 72E1); UDP-glycosyltransferase/ coniferyl-alcohol glucosyltransferase/ transferase, transferring glycosyl groups UGT72E1 is an UDPG:coniferyl alcohol glucosyltransferase which specifically glucosylates sinapyl- and coniferyl aldehydes. The enzyme is thought to be involved in lignin metabolism. similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G66690.1); similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT5G26310.1); similar to Anthocyanidin 3-O-glucosyltransferase (Flavonol 3-O-glucosyltransferase 5) (UDP-glucose flavonoid 3-O-glucosyltransferase 5) (GB:Q40287); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0787612432324618 0.776238389266924 0.458907166968018 1 1.07615343841547 13.6842729250097 0.0787612432324618 0.109564978822368
AT4G21090_at 5.68729034899409 5.5683657505972 6.05932879718703 5.85144279749049 6.07750380662535 5.55675810525153 5.43133214080485 5.71668961605703 4.88081193179524 5.05894904004875 4.71504465520214 4.60747984439526 4.74140702051723 4.54539213309298 4.58821574890155 4.95379814375540 4.53962819381838 4.45629744153228 5.32158766549699 0.223062677512130 0.208209210026124 0.223895662503544 0.223030376039389 0.214871180287326 0.221541857813701 0.217221405380623 0.209335366935985 0.220615125387083 0.205570363570197 0.213193938452367 0.205570363570197 0.215629341357777 0.212768819290901 0.216292738725600 0.214635114655308 0.209785795202841 0.213810412647577 0.210001161862896 4 4|0 -|/ 11256690 11257470 11257000 11256470 11258599 - gene protein_coding_gene FALSE TRUE AT4G21090.1|AT4G21090.2|AT4G21090.3 adrenodoxin-like ferredoxin 1|electron carrier similar to adrenodoxin-like ferredoxin 2 [Arabidopsis thaliana] (TAIR:AT4G05450.1); similar to Adrenodoxin [Medicago truncatula] (GB:ABE77794.1); contains InterPro domain Adrenodoxin; (InterPro:IPR001055); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.0791847011348925 -0.775528536104206 0.459304295903676 1 1.07561639610557 10.6088509754254 -0.0791847011348925 0.110804270542865
AT3G57790_at 8.34747350471807 8.50661742541464 8.5338074860354 8.63207215374144 9.20719830020623 8.5714588390609 8.56233497348397 8.40725569420939 8.7688354373268 8.51742433915791 8.85773136925548 8.60592495137995 8.64755445160898 8.6106597843809 8.38763077265253 8.59712103453897 8.13833251476523 8.59314681861258 8.72675167002029 0.145990099234831 0.142765865685251 0.146230813835980 0.149160414423625 0.140812144975566 0.147325040503579 0.142185730835769 0.145053346963033 0.153956754214282 0.140767114998122 0.140767114998122 0.142969399799042 0.140767114998122 0.148077459401145 0.148328125852229 0.142842102024300 0.158348831565255 0.162429777839790 0.143406787086044 3 3 - 21416417 21416999 21416633.545 21416364 21418601 - gene protein_coding_gene FALSE TRUE AT3G57790.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT5G41870.1); similar to Parallel beta-helix repeat [Medicago truncatula] (GB:ABE94662.1); similar to Os09g0487600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063526.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.081986345976073 0.775235741994549 0.459468166749186 1 1.07539500425728 17.2089105609342 0.081986345976073 0.117778540020505
AT1G08880_at 8.82396235494714 9.09167009375097 8.73255006545225 9.02366160700092 9.54159644374382 9.00164919901205 9.1972993276773 9.1346739331899 8.7856699830633 8.64046640964127 8.7049203664113 8.9833219486124 8.9925782481259 8.65699655162553 8.82066101669207 8.6961697396076 8.59850079916971 8.8891101060139 8.50300203290174 0.128276746020668 0.128496321316241 0.129425111969729 0.124524033436100 0.129122873642109 0.124983618377821 0.130179301628515 0.127144457274881 0.136727710377854 0.128508907483032 0.131168094134235 0.128960190489282 0.124498472923145 0.134776510203747 0.129607185335201 0.131155990662176 0.133228634699402 0.125527263244068 0.123568312446989 1 1|0 -|/ 2847150 2847612 2847405.1 2846952 2847784 - gene protein_coding_gene FALSE TRUE AT1G08880.1 histone H2A, putative Identical to Probable histone H2AXb (HTA3) [Arabidopsis Thaliana] (GB:Q9S9K7); Identical to Probable histone H2AXa (HTA5) [Arabidopsis Thaliana] (GB:O04848;GB:Q8LAC0); similar to histone H2A, putative [Arabidopsis thaliana] (TAIR:AT1G54690.1); similar to Histone H2AX (GB:O65759); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0813495532872288 0.774826407512904 0.459697327967059 1 1.07508561235273 17.7862971225473 0.0813495532872288 0.116330626127847
AT3G12100_at 6.89014304334955 7.27663975753725 7.10562821827582 6.80742336253727 7.45668598070205 6.17660214150969 6.23744107892448 6.4183560594586 6.78107018949394 5.99046787727486 6.32106222374122 5.8889505527963 5.99259848393297 6.8447964460285 5.70064724967781 6.53165291712976 4.95285435016538 6.15880854656204 6.7472504879095 0.242262398523689 0.244483653968583 0.25576875788899 0.24231815840412 0.245399320428980 0.263806458079739 0.245637386022029 0.24591241885042 0.262027123785858 0.242262398523689 0.248508167657083 0.242262398523689 0.243241658388703 0.249725307865581 0.247496617182056 0.250880640514693 0.268545501413545 0.255838619746315 0.242262398523689 3 3|0 -|/ 3854748 3855958 3855338.429 3854521 3857325 - gene protein_coding_gene FALSE TRUE AT3G12100.1|AT3G12100.2 cation efflux family protein / metal tolerance protein, putative|cation transporter/ efflux permease Identical to Metal tolerance protein C2 (AtMTPc2) (MTPC2) [Arabidopsis Thaliana] (GB:Q6ICY4;GB:Q9C7C2;GB:Q9LH56); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04620.1); similar to Os02g0832700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048630.1); similar to PREDICTED: similar to zinc transporter ZTL1 isoform 1 isoform 3 [Bos taurus] (GB:XP_878682.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524)|Identical to Metal tolerance protein C2 (AtMTPc2) (MTPC2) [Arabidopsis Thaliana] (GB:Q6ICY4;GB:Q9C7C2;GB:Q9LH56); similar to cation efflux family protein [Arabidopsis thaliana] (TAIR:AT2G04620.1); similar to Os02g0832700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048630.1); similar to cation efflux protein [Entamoeba histolytica HM-1:IMSS] (GB:XP_655380.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.138200782183219 -0.774820257776956 0.459700771405149 1 1.07508096519700 13.0737070541937 -0.138200782183219 0.239144434126426
AT3G60130_at 7.87488341237082 8.23240524922355 7.5367175620282 7.16339419721769 7.61594900856272 7.36848138256352 6.76332921209164 6.50325093527174 8.25810659783368 7.76867453214865 8.92465531934111 7.7720644200018 8.18957374066355 8.22184043124518 8.28447461960831 7.54854935057555 7.16012046966394 8.24048610586303 7.86441675709431 0.208926528497866 0.193696592799642 0.194131490169168 0.207092148063012 0.19955954603341 0.203523214060425 0.204572818052792 0.212895400914823 0.215665467677033 0.207519461765057 0.197302610957037 0.198625662702929 0.199650339229180 0.194168283639668 0.201196546608765 0.195563400344203 0.212548544940597 0.214541400570116 0.207821181361516 3 3|0 +|/ 22223404 22224498 22223935.625 22221221 22224815 + gene protein_coding_gene FALSE TRUE AT3G60130.1|AT3G60130.2|AT3G60130.3 glycosyl hydrolase family 1 protein / beta-glucosidase, putative (YLS1)|hydrolase, hydrolyzing O-glycosyl compounds similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G42260.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE83886.1); similar to OSIGBa0135C13.7 [Oryza sativa (indica cultivar-group)] (GB:CAH66812.1); similar to OSJNBa0022H21.3 [Oryza sativa (japonica cultivar-group)] (GB:CAE05483.2); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G42260.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT2G44450.1); similar to beta-glucosidase (GB:AAA91166.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360)|similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT5G44640.1); similar to beta-glucosidase (GB:AAA91166.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) 0.07832813172418 0.774534338677193 0.459860885769853 1 1.07486494035027 15.3855279629892 0.07832813172418 0.108910813176875
AT2G28390_at 7.22291325171409 7.25453450167338 6.6610805129766 7.11986517731094 7.47433038261503 7.24416272428679 7.54026936103554 7.33720035739845 6.70046004895565 7.03773313091323 7.37010591999648 7.43175029979918 7.50098286062424 7.07689468555248 7.34069910382468 7.3303895149459 7.34674484354234 7.10897658844821 7.12085195205327 0.187510284854485 0.177930709855095 0.187112551897398 0.175786258749783 0.181087375385037 0.178362576897916 0.184904399577694 0.177307658551874 0.19599390749835 0.185111124400606 0.181521072858187 0.175786258749783 0.184086584334150 0.184164902753332 0.179942595954214 0.182196252650593 0.194153970130518 0.184438943935879 0.191101567838874 2 2|0 -|/ 12146916 12147834 12147443.3 12146660 12150542 - gene protein_coding_gene FALSE TRUE AT2G28390.1 SAND family protein similar to Os01g0976000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045563.1); similar to HSV-1 stimulation-related 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87032.1); contains InterPro domain Protein of unknown function DUF254, SAND; (InterPro:IPR004353); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.0732166322298073 0.774435189245006 0.459916417986244 1 1.07479004442917 14.3649610441592 0.0732166322298073 0.0956817722654604
AT1G67550_at 6.45668977107872 5.67864014501212 5.80433823671443 5.14391408037267 5.46575980842593 4.6507092306315 5.07837971986993 4.66268698732512 5.05064553038998 4.84208581663832 4.7014139119107 4.90531567212189 4.55526550303469 4.96820535242880 4.56056452962305 5.05341546996421 4.8671120538223 4.69763852340334 4.68730286941442 0.238680270457892 0.237460848254141 0.233239987933403 0.227414664919558 0.239104679126357 0.237209377896027 0.227414664919558 0.231417385202789 0.245459854171172 0.227544332587517 0.233288711867372 0.227414664919558 0.230263284111693 0.234783151120223 0.237120435646787 0.227414664919558 0.235110462237671 0.233899716817130 0.236332496176213 1 1|0 +|/ 25319718 25320506 25320204.1 25316403 25321058 + gene protein_coding_gene FALSE TRUE AT1G67550.1 URE (UREASE); urease Encodes a nickel-containing urea hydrolase involved in nitrogen recycling. It requires three urease accessory proteins for its activation. similar to embryo-specific urease [Glycine max] (GB:AAO85884.1); similar to urease [Solanum tuberosum] (GB:CAC43857.1); similar to urease [Glycine max] (GB:CAC43845.1); contains InterPro domain Urease alpha-subunit, N-terminal; (InterPro:IPR011612); contains InterPro domain Metallo-dependent hydrolase, composite; (InterPro:IPR011059); contains InterPro domain Urease, gamma/beta/alpha type; (InterPro:IPR008221); contains InterPro domain Urease, alpha subunit; (InterPro:IPR005848); contains InterPro domain Urease, beta subunit; (InterPro:IPR002019); contains InterPro domain Urease, gamma subunit region; (InterPro:IPR002026); contains InterPro domain Amidohydrolase 1; (InterPro:IPR006680) -0.137156922613815 -0.774371278995195 0.459952215587987 1 1.07474177199186 10.1919536386886 -0.137156922613815 0.237194076875716
AT1G17680_at 5.36268829841668 5.78223524631694 5.21902368905823 5.46124950515338 6.33101981349954 5.71758920983109 5.79293700605926 5.05540978737978 4.97015971008718 5.10668837025879 4.39636800775865 4.47859668044246 5.02854973031271 4.8352384882192 4.30944274834195 5.19897948230108 5.39918901892708 4.75860194224448 5.54963118722599 0.193238942055002 0.189478747281501 0.192783406705029 0.201729766212456 0.198246124152658 0.193475309312091 0.18896195320498 0.190246721180510 0.198480623003919 0.197431040450704 0.191737530019698 0.192448701875245 0.18896195320498 0.195920775151642 0.19784455192486 0.189116266516033 0.204828622946511 0.191604279484810 0.196480087418380 1 1|0 +|/ 6081540 6082104 6081823.4 6076070 6082330 + gene protein_coding_gene FALSE TRUE AT1G17680.1|AT1G17680.2 transcription factor-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to Os11g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067667.1); similar to TPR Domain, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX96329.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.11215134518157 -0.772994691799538 0.460723722889574 1 1.07370284344553 10.5949926618856 -0.11215134518157 0.185978336900595
AT1G12410_at 10.4268937375061 10.4285680956171 10.2894474842389 10.3122742490200 10.5558767502632 10.1804742533883 10.6717153541725 10.5215998692269 10.5492734916536 10.3296647141915 10.5898586515250 10.4683505804376 10.3171035399708 10.4867909540367 10.5542856244881 10.5755807518590 10.3926388777277 10.2046543718824 10.3196584684864 0.0871456631794172 0.0850923780446884 0.0834851213369544 0.0847190153194734 0.0860088653051989 0.089250216178518 0.0842453799156505 0.0906029663443687 0.0906140689748548 0.0857647821142672 0.0870305819739043 0.087290221847157 0.0853281954517725 0.0851437238407854 0.0868069113423 0.0830665927216487 0.0855654793180537 0.0899234012737842 0.0830665927216487 1 0|1 /|+ 4224061 4224915 4224484.333 4223028 4225122 + gene protein_coding_gene FALSE TRUE AT1G12410.1 CLPR2 (Clp protease proteolytic subunit 2); endopeptidase Clp Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to Peptidase S14, ClpP [Medicago truncatula] (GB:ABE87427.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) -0.0642751928446548 -0.77282734388053 0.460817571420831 1 1.07357665192078 20.8474512960632 -0.0642751928446548 0.0700787116739891
AT4G32930_at 8.83277781283152 8.99438241737882 8.90367212526241 8.85778172622964 8.84688314997939 8.55313735693388 8.93702956103677 8.83457700607622 8.31795950533503 8.47705749105351 8.58416600929892 8.81670545768388 8.51830973214602 8.61828963856629 8.63843131764323 8.90195323865231 8.61997818449234 8.35015719212872 8.40042971218908 0.122672030779848 0.120577015890987 0.127005024278467 0.121263889518263 0.123221132418824 0.122922187340176 0.125620366111891 0.125022154635823 0.141198226132132 0.123650545010463 0.122477726223699 0.125170716665697 0.123894709291725 0.125961533365036 0.124878896628321 0.122790631320591 0.125227322330253 0.127539399916684 0.124137975737822 4 4|0 +|/ 15898892 15900153 15899613 15898840 15900292 + gene protein_coding_gene FALSE TRUE AT4G32930.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45078.1); similar to Os01g0565600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043357.1); contains InterPro domain Protein of unknown function DUF866, eukaryotic; (InterPro:IPR008584) 0.0615967502022126 0.772308966454935 0.461108357398263 1 1.07318590953263 17.3597706857256 0.0615967502022126 0.0611853097937043
AT2G27150_at 5.90533442804344 6.64939128391116 6.60904397914328 6.70311546211448 6.8145548797415 5.61868816978305 6.09183505103385 6.39535782663082 6.6034504327987 6.24948882857628 6.13756145951003 6.21321439332115 5.7618409226152 6.02619598702298 4.85266809616289 6.29920050797799 5.78471564975144 6.45571379531127 6.3565727280236 0.267376228327081 0.259154170287941 0.263808459676579 0.269796739886895 0.259154170287941 0.261410393919721 0.274911931738367 0.268437148093065 0.273813838414808 0.261633346599439 0.266987468694101 0.259154170287941 0.271523820221251 0.273445723945994 0.272020016406310 0.263365352100955 0.275792014876502 0.26480332848426 0.261676329726706 2 2|0 +|/ 11613161 11614017 11613704.3 11608832 11615528 + gene protein_coding_gene FALSE TRUE AT2G27150.1|AT2G27150.2 AAO3 (ABSCISIC ALDEHYDE OXIDASE 3) Encodes the aldehyde oxidase delta isoform catalyzing the final step in abscisic acid biosynthesis. Identical to Abscisic-aldehyde oxidase (EC 1.2.3.14) (Aldehyde oxidase 3) (AO-3) (AtAO-3) (AtAO4) (AAO3) [Arabidopsis Thaliana] (GB:Q7G9P4;GB:O64429;GB:Q7GD73;GB:Q9SIG7;GB:Q9SLZ2); similar to AAO4 (ALDEHYDE OXIDASE 4), aldehyde oxidase [Arabidopsis thaliana] (TAIR:AT1G04580.1); similar to AAO1 (ALDEHYDE OXIDASE 1) [Arabidopsis thaliana] (TAIR:AT5G20960.2); similar to AAO2 (ALDEHYDE OXIDASE 2) [Arabidopsis thaliana] (TAIR:AT3G43600.1); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93768.1); similar to aldehyde oxidase [Brassica rapa subsp. pekinensis] (GB:BAE93767.1); similar to aldehyde oxidase [Lycopersicon esculentum] (GB:AAG22607.1); contains InterPro domain CO dehydrogenase flavoprotein, C-terminal; (InterPro:IPR005107); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain 2Fe-2S ferredoxin, iron-sulfur binding site; (InterPro:IPR006058); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; (InterPro:IPR000674); contains InterPro domain [2Fe-2S]-binding; (InterPro:IPR002888); contains InterPro domain Aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; (InterPro:IPR008274); contains InterPro domain Molybdopterin dehydrogenase, FAD-binding; (InterPro:IPR002346); contains InterPro domain Ferredoxin; (InterPro:IPR001041) -0.14295541819149 -0.771768052831804 0.461411914861335 1 1.07277841983308 12.5206948923462 -0.14295541819149 0.249864406393323
AT3G07700_at 9.75901093556816 9.53995781927002 10.4182794436576 10.3630283318940 10.0929170678835 9.81475583946863 10.4702623268955 10.2894446433994 9.85607036118614 9.93134454953366 9.50742985579297 9.13228842807563 9.73362607511684 9.6093590178749 8.89616663475628 9.90946131423599 9.765960938619 9.64435426323353 9.64351526893943 0.0953350129933462 0.100505845035996 0.0996734281411222 0.0997162659740707 0.100192479669725 0.100054475130488 0.0973461717374105 0.0958862162854866 0.101863386514543 0.098001048779636 0.101409272107415 0.0983604913706986 0.100431138118586 0.0993592316477403 0.103363881697325 0.0944743281130262 0.107101636420865 0.102986617558929 0.0965349471481133 3 3|0 -|/ 2459891 2460864 2460392 2459497 2463932 - gene protein_coding_gene FALSE TRUE AT3G07700.1|AT3G07700.2 ABC1 family protein similar to ATATH13 (ABC2 homolog 13) [Arabidopsis thaliana] (TAIR:AT5G64940.2); similar to Os09g0250700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062679.1); similar to ABC-1 [Crocosphaera watsonii WH 8501] (GB:ZP_00517317.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain ABC-1; (InterPro:IPR004147) -0.0639515022403039 -0.771228571798896 0.461714800286621 1 1.07237225358167 19.7610274889294 -0.0639515022403039 0.0694606275774448
AT1G21410_at 7.82582581340235 7.98277331884177 8.79636831072597 9.02608295835315 9.14792721764123 8.93983506441417 9.38306188197837 9.28988921126708 7.42823429020582 8.46865072228413 7.24901744630223 6.23420429038347 8.32156684431144 8.08760282578024 6.82301880350846 7.83920883078677 8.94165875521241 7.84938743244817 7.80858911370563 0.166328733847549 0.16518596912995 0.16518596912995 0.171914923844517 0.172588265734085 0.178280841153691 0.174030641108195 0.175761305351111 0.182193466104759 0.167944865404824 0.177548331775951 0.193717155492635 0.16518596912995 0.173811704057250 0.178949912562815 0.165998520359705 0.169005099799855 0.169102530793558 0.175671603217638 1 1 + 7498775 7499330 7499137.727 7497130 7499568 + gene protein_coding_gene FALSE TRUE AT1G21410.1 F-box family protein AtSKP2;1 is a homolog of human SKP2, the human F-box protein that recruits E2F1. Contains an F-box motif at the N-terminal region and a C-terminal Leu-rich repeat domain. Forms part of an E3-ubiquitin-ligase SCF (Skp1, cullin, F-box) complex and recruits phosphorylated AtE2Fc, a transcriptional factor that might play a role in cell division and during the transition from skotomorphogenesis to photomorphogenesis. AtSKP2;1 (At1g21410) and AtSKP2;2 (At1g77000) may be duplicated genes. similar to ATSKP2,2 (ARABIDOPSIS HOMOLOG OF HOMOLOG OF HUMAN SKP2 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G77000.1); similar to MGC81000 protein [Xenopus laevis] (GB:AAH77969.1); similar to Os05g0425700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055598.1); similar to Os01g0881900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045004.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) 0.0617746381355149 0.770764240105777 0.461975599459386 1 1.07202286137623 16.5839869032398 0.0617746381355149 0.0622479404864137
AT4G01560_at 5.95936802213655 6.25759265824911 5.8542999895423 5.77223755270779 5.72159020568734 5.1628594521635 6.49749647096117 5.80780387992208 3.82338021115414 4.02900153097483 3.89726601766307 4.18903026505214 4.26949183490564 3.58540984890538 5.30727808468617 3.81609065316404 5.1309534999033 4.06510251925402 4.09281533791977 0.277996623265627 0.28408104427866 0.283506747816201 0.2849014085393 0.277202673036171 0.289085769070113 0.276026573211175 0.276631640987333 0.291025898179014 0.290957870448541 0.281313724542964 0.276026573211175 0.282015354676757 0.280029097308254 0.281852953850247 0.281353047934729 0.283086462843625 0.282893757114849 0.289728676168515 4 4|0 -|/ 677471 678438 677973 677054 679237 - gene protein_coding_gene FALSE TRUE AT4G01560.1 MEE49 (maternal effect embryo arrest 49) similar to IMP4 [Arabidopsis thaliana] (TAIR:AT1G63780.1); similar to putative RNA processing factor 1-like [Solanum tuberosum] (GB:ABB86266.1); contains InterPro domain Brix; (InterPro:IPR007109) -0.100986488683262 -0.770478283953963 0.462136259760384 1 1.07180778003356 10.0113111291502 -0.100986488683262 0.162664765628825
AT2G28190_at 11.3280817105145 11.4711148037895 11.0777002378028 10.9357292266283 10.7745713424555 10.8105660360656 10.7723787540161 10.8826246770523 10.2228018444383 10.9775970283883 12.3827837334491 10.0249954661521 9.63039904529198 10.8664100611153 13.1853078478518 9.75001463596334 10.0692570053894 11.7849618670303 10.7053092550310 0.0877217256762402 0.0847897160099817 0.087174608199191 0.0904201287597188 0.0847897160099817 0.0921811912803119 0.0847897160099817 0.0875457944589401 0.0904074108428701 0.0867947315448442 0.0858112955488412 0.0855554826875342 0.0889445703419766 0.0889650515677348 0.0850992637575291 0.0861015574092325 0.0930153181936712 0.0855405572782687 0.0847897160099817 2 2|0 +|/ 12021770 12022907 12022339.143 12021575 12023646 + gene protein_coding_gene FALSE TRUE AT2G28190.1 CSD2 (COPPER/ZINC SUPEROXIDE DISMUTASE 2); copper, zinc superoxide dismutase Encodes a chloroplastic copper/zinc superoxide dismutase CSD2 that can detoxify superoxide radicals. Identical to Superoxide dismutase [Cu-Zn], chloroplast precursor (EC 1.15.1.1) (SODCP) [Arabidopsis Thaliana] (GB:O78310;GB:Q9SUJ8); similar to CSD1 (copper/zinc superoxide dismutase 1) [Arabidopsis thaliana] (TAIR:AT1G08830.2); similar to Cu/Zn superoxide dismutase precursor [Helianthus annuus] (GB:CAH06449.1); contains InterPro domain Superoxide dismutase, copper/zinc binding; (InterPro:IPR001424) 0.0563109447780732 0.769914638056326 0.462453044343448 1 1.07138403572803 21.8050969737404 0.0563109447780732 0.0402380991706329
AT1G49510_at 7.18082654945173 7.33467960159831 6.59928721936536 6.91311363086041 7.40008042894568 6.97393400447062 7.73352173958217 7.68221976857127 5.92042066348015 7.1386471386937 7.16895828017686 7.5486590535824 7.49028906485589 7.12660304656104 7.62866081977609 7.83176678545828 7.14091843740394 6.80678000086239 6.99882389426556 0.235301801821396 0.224227920870619 0.227504692392122 0.224263416488718 0.217517819537919 0.24569028755971 0.223678551920468 0.241947447236253 0.257380339424564 0.22293055626733 0.221264502420350 0.218605119765024 0.224449658295348 0.225654933511439 0.243817328179209 0.223010505783998 0.248862891606752 0.247820139665867 0.223752829606503 1 0|1 /|+ 18331156 18331483 18331359.75 18330557 18332278 + gene protein_coding_gene FALSE TRUE AT1G49510.1 EMB1273 (EMBRYO DEFECTIVE 1273) 0.072828721690561 0.769906579517085 0.462457574507593 1 1.07137797931748 14.2416045353046 0.072828721690561 0.0957901640575394
AT1G11700_at 6.53533725229121 6.91616933405134 7.55872879946266 7.54190811668713 6.7574376785668 7.42926268731869 7.85759934230092 8.12671600999938 6.77665926607127 8.09058571936304 7.39386768457781 7.75705979921211 8.52244457300427 7.86242166311165 6.74242280051179 8.49395767611013 8.56231085676774 6.80025491573839 7.77317831756865 0.172024605056479 0.171903625555303 0.16374389720563 0.16280097996856 0.165616073996769 0.167683783017297 0.163427314025322 0.166417169751674 0.178933709703390 0.16619685762799 0.164831262946532 0.164769887778458 0.16280097996856 0.164925460498736 0.171510652260005 0.163768674884959 0.164570264491974 0.167031288925278 0.16280097996856 1 1 + 3945878 3946172 3946014.091 3945737 3946613 + gene protein_coding_gene FALSE TRUE AT1G11700.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G61930.1); similar to Protein of unknown function DUF584 [Medicago truncatula] (GB:ABE80969.1); similar to Os07g0516300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059782.1); contains InterPro domain Protein of unknown function DUF584; (InterPro:IPR007608) 0.0914567821548431 0.769633869289545 0.462610897787342 1 1.07117305554559 14.9972200344832 0.0914567821548431 0.141554973866076
AT4G26840_at 9.90995978645443 9.97390820135515 10.0040903201676 10.0808056972593 10.0642417167350 9.90940313189798 9.8810785486561 10.0156487475866 10.0766392582689 9.99540770050498 10.0285264175014 9.92676809134966 9.77720415592091 9.75806154269821 9.89724227833475 9.88760456663389 9.77296093593918 9.83910056173001 10.0555059069599 0.0773655754852203 0.0736422992486694 0.0713866399425159 0.0727541746109891 0.069871653304903 0.0780326381023488 0.0709768761748368 0.070127544567547 0.081917555903588 0.069871653304903 0.073846467165285 0.069871653304903 0.0748420712727739 0.0717059799721757 0.0741097229620684 0.069871653304903 0.0751659604433711 0.0747466738232577 0.0733045236221131 4 4|0 +|/ 13497501 13498426 13498213.125 13497332 13498736 + gene protein_coding_gene FALSE TRUE AT4G26840.1 SUM1 (SMALL UBIQUITIN-LIKE MODIFIER 1) Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. Identical to Ubiquitin-like protein SMT3 (SMT3) [Arabidopsis Thaliana] (GB:P55852;GB:Q9SZ24); similar to SUM2 (SMALL UBIQUITIN-LIKE MODIFIER 2) [Arabidopsis thaliana] (TAIR:AT5G55160.1); similar to Os01g0918300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045207.1); similar to ubiquitin-like protein SMT3 [Phaseolus vulgaris] (GB:AAM21576.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.0560488288229131 -0.768387604263694 0.46331200166497 1 1.07023736383096 19.9316176141014 -0.0560488288229131 0.0394848305662085
AT2G47940_at 9.20512920752257 9.07145460752759 8.64405979902564 8.54562010252716 9.61486306754038 8.89764615797832 9.6597610094152 9.35907195111545 9.8706568312414 9.76016105935939 10.1877380303434 10.4375566133423 9.82645922679387 10.0422754092803 10.4664566407358 10.1051668955033 9.30352331503704 9.812442068396 9.77994235683479 0.111902362360672 0.11287072468377 0.120728423238171 0.126347166661076 0.115659978730838 0.127243755810281 0.115768724171251 0.113170539245661 0.114120767200065 0.117433344764159 0.116095793478297 0.116599697040194 0.115840102023469 0.116225772833729 0.111197921485674 0.111995443027004 0.122482250155205 0.114443914592247 0.119510740376796 2 2|0 -|/ 19625473 19626352 19625839.6 19625056 19629302 - gene protein_coding_gene FALSE TRUE AT2G47940.1 DEGP2 (DEGP PROTEASE 2); serine-type peptidase/ trypsin Encodes DegP2 protease (DEGP2); nuclear gene for chloroplast product. Identical to Protease Do-like 2, chloroplast precursor (EC 3.4.21.-) (DEGP2) [Arabidopsis Thaliana] (GB:O82261;GB:Q9FPE9); similar to DEGP9 (DEGP PROTEASE 9), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT5G40200.1); similar to putative DegP2 protease [Oryza sativa (japonica cultivar-group)] (GB:AAT93972.1); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.0895956931717583 -0.768353142266888 0.463331398725136 1 1.07021150840225 19.0378452498686 -0.0895956931717583 0.137616358845858
AT4G24730_at 5.73987338535280 5.83265046302353 6.00489191997248 5.51007743548974 5.65592337282796 5.30765677959662 5.38577139827914 5.15191369453564 5.99820924893005 5.39687406024895 5.52882999416813 5.65471358141037 5.22232225301074 5.26503209289016 5.49862231053421 5.56395522614253 4.92293894540311 5.49716320809856 5.54016943012826 0.2216389561947 0.218645846448004 0.222234666968058 0.226148545766751 0.220087776823795 0.220766868212226 0.219400752723765 0.218282551835285 0.223693305632300 0.225862871401358 0.223976091512820 0.217755850442522 0.217755850442522 0.224984059306792 0.229162130267151 0.218332501533191 0.225870999723695 0.220198721114652 0.217755850442522 4 4 - 12752735 12753273 12753007.818 12752587 12754106 - gene protein_coding_gene FALSE TRUE AT4G24730.1|AT4G24730.2 calcineurin-like phosphoesterase family protein similar to PREDICTED: hypothetical protein [Macaca mulatta] (GB:XP_001114048.1); similar to Os08g0557200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062482.1); similar to Os07g0688000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060698.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.0794009516523043 -0.767495665808685 0.463814205369367 1 1.06956849999714 11.0932355300812 -0.0794009516523043 0.113404030487100
AT3G29160_at 8.1742925106347 8.0315082134407 7.86644553143732 7.98701007708472 8.37735776792233 7.76955825775852 8.24932610340653 8.14050718755795 7.41090724231687 7.75824948168023 8.02973261336108 8.06644313245582 7.8631721084644 7.95579542310657 7.46458230193938 8.10064284987823 8.333709477238 7.78600341106736 7.76236719526547 0.173081556281654 0.168782083855608 0.165971993089202 0.165971993089202 0.165971993089202 0.170844685911869 0.173450028047421 0.174355072731293 0.194785150732399 0.175475932251858 0.173027831491644 0.165971993089202 0.171643239961425 0.169055538561631 0.176760628928177 0.166195545098324 0.183976112664851 0.185952008962177 0.175091488620154 3 0|3 /|- 11130135 11131152 11130692.7 11129862 11133313 - gene protein_coding_gene FALSE TRUE AT3G29160.1|AT3G29160.2|AT3G29160.3 AKIN11 (Arabidopsis SNF1 kinase homolog 11, SNF1-RELATED PROTEIN KINASE 1.2); protein kinase encodes a SNF1-related protein kinase that physically interacts with SCF subunit SKP1/ASK1 and 20S proteosome subunit PAD1. It has also been shown to interact with the WD protein PDL1. Identical to SNF1-related protein kinase catalytic subunit alpha KIN11 (EC 2.7.11.1) (AKIN11) (AKIN alpha1) (KIN11) [Arabidopsis Thaliana] (GB:P92958;GB:P92968); similar to AKIN10 (Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE 1.1), protein kinase [Arabidopsis thaliana] (TAIR:AT3G01090.2); similar to SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3), kinase [Arabidopsis thaliana] (TAIR:AT5G39440.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); similar to SNF1 [Lycopersicon esculentum] (GB:AAF66639.1); similar to SNF1-related protein kinase [Cucumis sativus] (GB:CAA71142.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Kinase-associated, C-terminal; (InterPro:IPR001772); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449)|Identical to SNF1-related protein kinase catalytic subunit alpha KIN11 (EC 2.7.11.1) (AKIN11) (AKIN alpha1) (KIN11) [Arabidopsis Thaliana] (GB:P92958;GB:P92968); similar to AKIN10 (Arabidopsis SNF1 kinase homolog 10, SNF1-RELATED PROTEIN KINASE 1.1), protein kinase [Arabidopsis thaliana] (TAIR:AT3G01090.2); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95888.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) 0.0786766315293712 0.76729474273899 0.463927384233776 1 1.06941792019547 15.8714264417102 0.0786766315293712 0.111641715704762
AT3G27230_at 5.94653469372657 6.66990792855409 6.38217156128359 6.39942029120745 6.05070659025136 5.69687759827778 6.78057508462754 6.58479476034279 5.55151419190255 5.89619355582114 6.44895989283069 6.97813405670415 6.1118433590819 6.34429645347326 6.18984131920517 6.26658286934096 5.88889106084945 6.36089837729929 5.88297340846316 0.218994225452055 0.217811117921306 0.219298830866859 0.219334772897221 0.213172030305339 0.213783035964225 0.222553455668907 0.225006437793298 0.240696710041428 0.229829106298806 0.218080669357560 0.220428838505545 0.214254643636756 0.217717616207035 0.22572065689267 0.213172030305339 0.225347295449874 0.221464941032013 0.229647589956028 3 3 + 10056136 10056652 10056409.182 10055166 10056932 + gene protein_coding_gene FALSE TRUE AT3G27230.1 similar to ATRAD3 (Arabidopsis thaliana Ras Associated with Diabetes protein 3) [Arabidopsis thaliana] (TAIR:AT5G40830.2); similar to hypothetical protein [Prunus persica] (GB:AAO14627.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) 0.0918140491557273 0.765710392764116 0.464820479074189 1 1.06823173341690 12.3641608846974 0.0918140491557273 0.143446684842089
AT4G33500_at 9.17026178526741 9.20471151478901 9.23255627453027 9.06575591341742 9.68788034649174 9.00842060346673 9.4900291641546 9.21312331288644 9.37315602206658 9.32323632828112 9.58604855502068 9.52594117285394 9.34584913061518 9.62789538685308 9.34835712061563 9.80914236995384 9.3763250231572 9.405748369837 9.2334918587589 0.137633867918789 0.132813673767321 0.154480487122864 0.145928807645782 0.136642125760149 0.165763507491446 0.14007178369729 0.139406856617286 0.147232634386210 0.143397744512909 0.133373805309177 0.132505286096986 0.137118291830176 0.134047227592987 0.142144063842868 0.131330741167140 0.145590785049591 0.141463871767593 0.136939105122283 4 4 - 16112859 16113722 16113381.364 16112661 16116351 - gene protein_coding_gene FALSE TRUE AT4G33500.1 protein phosphatase 2C-related / PP2C-related similar to catalytic [Arabidopsis thaliana] (TAIR:AT4G16580.1); similar to Os03g0192500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049240.1); similar to Protein phosphatase 2C containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94415.1); similar to Protein phosphatase 2C containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94416.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.086161914139979 0.765469698431995 0.464956257221951 1 1.06805171267449 18.6656547614499 0.086161914139979 0.130349516901524
AT2G45850_at 8.1940869515524 8.28541831220828 7.25267873508939 7.3999666957405 8.56678669337646 8.46931985862355 7.78934281336349 7.55702309559283 6.8825789071032 7.00812409475525 7.25756960548474 6.51039068521234 7.06889442431787 7.3100221903559 6.46828667126978 6.19695103101248 6.95014182602125 6.74238010887501 6.79758474824697 0.200670671836942 0.194620250566770 0.199593089027481 0.205273378934393 0.198736652097970 0.195467577604025 0.199985244479984 0.202891683997677 0.211449403467692 0.194620250566770 0.197591916163483 0.196226229608905 0.201951191739403 0.198169536102518 0.199089562007155 0.194620250566770 0.200672781117410 0.206855069105791 0.196127401513676 2 2 - 18878998 18879787 18879465 18878553 18881046 - gene protein_coding_gene FALSE TRUE AT2G45850.1|AT2G45850.2 DNA-binding family protein similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT3G61310.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE82932.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.0586480731774546 -0.762764552338453 0.46648405743917 1 1.06603182558953 14.7939156367036 -0.0586480731774546 0.0529183493803675
AT1G22930_at 10.3929956212388 10.3677729162066 10.7303941575311 10.6888271938596 10.8084786492171 10.3150395111867 10.0880964181984 10.0786954701302 10.2401946793305 10.3117170836449 9.58328514672908 9.39876524528428 9.8930536109053 9.8966585282632 8.61132644931208 10.3647784278117 10.1377917335107 9.67264897311536 10.1548809210621 0.124131442794071 0.117212672665429 0.128451658245269 0.124357296501782 0.119513978800616 0.128658425461887 0.121250466875332 0.117259892562690 0.138202963656529 0.114846920830082 0.119761171176717 0.116382810686830 0.116797602711770 0.121817620171109 0.133871669994979 0.117337318119183 0.130296000045337 0.123049435440080 0.11682598649363 1 1|0 +|/ 8121184 8121809 8121582.556 8117386 8122116 + gene protein_coding_gene FALSE TRUE AT1G22930.1 T-complex protein 11 similar to T-complex protein 11 [Arabidopsis thaliana] (TAIR:AT4G09150.1); similar to OJ000114_01.6 [Oryza sativa (japonica cultivar-group)] (GB:CAE03125.3); similar to Os02g0556700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047132.1); similar to H0525C06.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66841.1); contains InterPro domain T-complex 11; (InterPro:IPR008862) -0.0685071377370972 -0.761856822980438 0.466997460968851 1 1.06535542023232 20.3989805300522 -0.0685071377370972 0.085820904510008
AT3G06470_at 7.12418615677116 7.9112449172885 6.58391007770371 6.71853526241405 7.40352385534336 7.79430047296296 6.81811931269606 7.7730691313397 7.4293069445313 6.14271054408659 7.40395289470336 7.62849068528502 7.36829208750075 7.77382315023862 7.1919362060553 7.03143044555338 5.92060534586575 7.3173825631943 6.42072456913836 0.165643100680323 0.164107884142842 0.167989476413892 0.167693949030504 0.161589111156734 0.180257500647947 0.171930705217460 0.161589111156734 0.168530590284650 0.173995393774603 0.161589111156734 0.163634965549522 0.162236468581835 0.167737903318811 0.168760767410034 0.161589111156734 0.175791565956647 0.161589111156734 0.177177824428329 3 3 + 1984452 1984874 1984647.636 1984174 1985265 + gene protein_coding_gene FALSE TRUE AT3G06470.1 GNS1/SUR4 membrane family protein similar to GNS1/SUR4 membrane family protein [Arabidopsis thaliana] (TAIR:AT3G06460.1); similar to long chain fatty acid elongation enzyme [Gossypium hirsutum] (GB:CAE75664.1); contains InterPro domain GNS1/SUR4 membrane protein; (InterPro:IPR002076) 0.129327178648156 0.761332411653016 0.467294232719762 1 1.0649649653606 14.2002294107574 0.129327178648156 0.225783018127549
AT3G56460_at 8.80422775295658 8.83440480885019 8.68996757694953 8.6522918974217 9.18213672720023 8.39567016311255 8.54641919401541 8.72575210805077 8.3342576251933 8.85544246104715 8.62820824406553 8.40212535900373 8.51039417063449 8.35958748877298 8.35120800848292 8.60677642516234 8.27962809995772 8.49370991474062 8.71718990784372 0.156157705428488 0.146813304226828 0.158861602536814 0.157878442127110 0.147485799147856 0.156702529491185 0.147464694546719 0.146844340973834 0.172169433938131 0.149162458482331 0.157456056899402 0.147898479959156 0.151341901632493 0.161836520027672 0.149234543035262 0.147001535135441 0.159422037971676 0.144057417520413 0.144411253361746 3 0|3 /|- 20944009 20944758 20944288.111 20943770 20945519 - gene protein_coding_gene FALSE TRUE AT3G56460.1 oxidoreductase, zinc-binding dehydrogenase family protein similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT4G21580.1); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Roseovarius nubinhibens ISM] (GB:ZP_00958583.1); similar to Os05g0313500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055166.1); contains InterPro domain Quinone oxidoreductase/zeta-crystallin; (InterPro:IPR002364); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.089679829486376 -0.76087985524148 0.467550440489588 1 1.06462819705337 17.2736511345099 -0.089679829486376 0.139844879773533
AT4G24550_at 9.61607058125298 9.67361478855598 9.59753494638273 9.60420013282459 9.91369807740395 9.49797429504756 9.5791569445556 9.38760186789221 9.76187904219691 9.41212713114839 9.80178362566143 9.59893018002283 9.53468376940553 9.5245654496694 9.54908457158395 9.46597028259878 9.59647562230099 9.70770273157309 9.48765024178952 0.0959754353992804 0.0937258078108864 0.103950921178834 0.0962557032977914 0.0927512454328839 0.0944531399075021 0.095893107503013 0.0964978856842914 0.0976544946593867 0.0957437492856602 0.0968760739064168 0.091751359453363 0.0947348833978287 0.0921592592470522 0.0974924140541602 0.0945234986068885 0.102730837011811 0.0966151618167106 0.0952995892343686 4 4|0 +|/ 12677766 12678696 12678308.333 12675744 12679074 + gene protein_coding_gene FALSE TRUE AT4G24550.1|AT4G24550.2 clathrin adaptor complexes medium subunit family protein similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT5G46630.2); similar to Os07g0620300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060299.1); similar to Adaptor complexes medium subunit family protein [Tetrahymena thermophila SB210] (GB:XP_976643.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968)|similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT5G46630.1); similar to Os07g0620300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060299.1); similar to Adaptor complexes medium subunit family protein [Tetrahymena thermophila SB210] (GB:XP_976643.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) 0.0663774373704542 0.760684129816796 0.467661276009179 1 1.06448260214799 19.1843739546463 0.0663774373704542 0.0798446859508349
AT3G46600_at 7.51129381136258 7.41018378796455 7.97377470832076 8.20150195156609 8.06001390513679 7.50852151107178 7.7754759991709 7.66859178196172 7.20656962086013 6.63120439358945 6.5736746375788 6.91519921388352 6.04821629448881 6.75627403471636 6.28087204088226 6.54223648979149 6.42740389876576 6.57999191313864 6.28705477288075 0.199151919621869 0.200309834715423 0.20435873039417 0.201262078323217 0.204983391420283 0.213317198523058 0.214261690136233 0.199162882752266 0.204385432430185 0.200053480715708 0.200000956794786 0.201568618204124 0.201573973363221 0.199151919621869 0.204604805277631 0.207498269557168 0.201029528493704 0.202933722672676 0.204019508445111 3 3 + 17170263 17170740 17170470.364 17168909 17170950 + gene protein_coding_gene FALSE TRUE AT3G46600.1|AT3G46600.2|AT3G46600.3 scarecrow transcription factor family protein similar to scarecrow-like transcription factor 11 (SCL11) [Arabidopsis thaliana] (TAIR:AT5G59450.1); similar to GRAS1 [Nicotiana tabacum] (GB:ABE02823.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) 0.075886988435591 0.760224283810565 0.467921745881346 1 1.06414066214745 14.3755495959940 0.075886988435591 0.106347833066364
AT1G47420_at 11.0032337233699 11.2856910883040 11.4792251511868 11.4097912070602 11.2622474519599 11.2331210150313 11.1614981729816 11.4377499403146 11.1450411703007 11.0663552849143 11.0384073400246 11.0780485538776 10.9978679984471 11.1527500958603 10.9405996921265 11.0963941604101 10.8780699717200 11.1374072807486 10.9022806449434 0.0667122997497067 0.0649025528569182 0.0681166083375548 0.0679163275108305 0.0682904364394862 0.0671804683820221 0.0755774401964633 0.0649025528569182 0.067092637765076 0.0682754061415672 0.0649025528569182 0.0650386077910641 0.0702265402039861 0.0649025528569182 0.0671229967546201 0.0667561015792318 0.0731858793185296 0.0663666026437598 0.0678413650227153 1 1|0 -|/ 17398225 17399267 17398763.444 17397958 17399695 - gene protein_coding_gene FALSE TRUE AT1G47420.1 Identical to Unknown protein At1g47420, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9SX77); similar to APFI, carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G47260.1); similar to unknown [Hordeum vulgare subsp. vulgare] (GB:AAL77110.1) 0.0630518724996918 0.75985871410015 0.468128883010701 1 1.06386895297716 22.3229874704617 0.0630518724996918 0.0696029695599567
AT3G60810_at 7.22390783431618 7.24565307260016 6.92838776004479 6.58159394312057 7.09235570259036 6.95367343600127 7.35005672950893 7.230583127067 6.77692276063955 6.64259710126062 7.29620005610359 7.15689042514727 6.51364510495536 6.93534596230188 7.34113270172795 6.83100522153057 6.85640306438677 7.19142841173874 6.88081673881264 0.198646142482312 0.197246028492024 0.191555496999357 0.195893953611286 0.188597326000977 0.201239349627818 0.189319359928166 0.190912054848727 0.193261401443643 0.190648276183112 0.188819739269359 0.187224562220456 0.20259917587126 0.203341650742787 0.197581253360987 0.186600120294803 0.199549453911364 0.203268249270143 0.19661512005668 3 3|0 +|/ 22481633 22482704 22482209.5 22481494 22482881 + gene protein_coding_gene FALSE TRUE AT3G60810.1|AT3G60810.2 similar to Protein of unknown function DUF1499 [Medicago truncatula] (GB:ABE92390.1); contains InterPro domain Protein of unknown function DUF1499; (InterPro:IPR010865) -0.0625349894257867 -0.759569447398241 0.468292828446638 1 1.06365403582869 13.9667940683515 -0.0625349894257867 0.0679656675604457
AT1G10700_at 7.25931951625308 7.73007150892299 7.35915068610391 7.00869727512688 7.34907920071568 7.02540069862368 7.10320279327543 6.70036527746176 6.53349115410147 6.23943080964816 6.61589073741807 6.95549206559253 5.72749136688384 6.31880189615324 6.5351682819552 6.12811705475322 6.1991431578707 6.27811463645173 5.69820515500748 0.214385075443055 0.224659975629257 0.224725654265421 0.218602998371985 0.217015463262402 0.225113836145868 0.217226201813266 0.225594571468902 0.236757007395066 0.212165778317992 0.219953173116589 0.214256631834926 0.221877604108716 0.21744332755757 0.223645948454913 0.21650130771473 0.236259551435968 0.228402143886722 0.213558326891253 1 1|0 +|/ 3555066 3556249 3555621.8 3554105 3556504 + gene protein_coding_gene FALSE TRUE AT1G10700.1 ribose-phosphate pyrophosphokinase 3 / phosphoribosyl diphosphate synthetase 3 (PRS3) Identical to Ribose-phosphate pyrophosphokinase 3 (EC 2.7.6.1) (Phosphoribosyl pyrophosphate synthetase 3) (PRS3) [Arabidopsis Thaliana] (GB:Q93Z66;GB:Q9SAD2;GB:Q9SGY0;GB:Q9XFR3); similar to ribose-phosphate pyrophosphokinase 4 / phosphoribosyl diphosphate synthetase 4 (PRS4) [Arabidopsis thaliana] (TAIR:AT2G42910.1); similar to Ribose-phosphate pyrophosphokinase 3, mitochondrial precursor (Phosphoribosyl pyrophosphate synthetase 3) (GB:Q9XGA0); contains InterPro domain Phosphoribosyltransferase; (InterPro:IPR000836); contains InterPro domain Ribose-phosphate pyrophosphokinase; (InterPro:IPR005946) 0.0875386089400043 0.75907937216282 0.468570670664672 1 1.06329008467799 13.4428207558374 0.0875386089400043 0.135322868063263
AT1G16240_at 10.2753601451446 10.5341287323515 10.3736001833742 10.4364625172240 10.5725980509516 10.7452644211167 9.745204046847 10.1472078736805 10.5083078368748 10.1269679272751 10.2607045999374 10.0003280911785 10.2209600539542 10.2333309386781 9.7285104717354 10.2102433858765 9.97082884292397 10.0417886762628 10.2689062486602 0.0967654255787433 0.0988115290062893 0.104848124299856 0.0987290133914256 0.101505199949523 0.104763010082370 0.101179832598978 0.0986714694695026 0.102573311600115 0.106834035133673 0.101447802260614 0.100640144583916 0.0967654255787433 0.106816974803731 0.103640728645633 0.0967654255787433 0.110471492213868 0.100980382447031 0.103961299730005 1 1 - 5555199 5556194 5555625.182 5555001 5556835 - gene protein_coding_gene FALSE TRUE AT1G16240.1|AT1G16240.2|AT1G16240.3 SYP51 (SYNTAXIN OF PLANTS 51) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. Identical to Syntaxin-51 (AtSYP51) (SYP51) [Arabidopsis Thaliana] (GB:Q9SA23); similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to Os02g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045701.1); similar to syntaxin of plants [Medicago sativa] (GB:AAZ32890.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012)|similar to SYP52 (SYNTAXIN OF PLANTS 52) [Arabidopsis thaliana] (TAIR:AT1G79590.2); similar to Os02g0119400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045701.1); similar to syntaxin of plants [Medicago sativa] (GB:AAZ32890.1); similar to Os08g0277900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061436.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain t-snare; (InterPro:IPR010989) 0.069224485979523 0.758936306355277 0.46865180050707 1 1.06318387602867 20.5460936897555 0.069224485979523 0.0886360254005773
AT1G72940_at 5.59102570292042 5.82245239953398 6.91709874036841 6.86041916789252 6.39346665333952 5.87376655361409 6.275288585947 5.86422009857535 5.479003447347 5.45948169203653 4.71174120212112 4.43455639439524 4.55818235339779 4.64096762943835 4.64613363335999 6.29526198642147 5.32972310015129 5.30859067745717 5.41212118070946 0.249244502204243 0.24957800317889 0.256009370813262 0.261953374272318 0.250817482786545 0.255158581596017 0.249701516406258 0.260181650610383 0.252649467487911 0.248546707348135 0.252948331542791 0.248582312036999 0.254412674721492 0.250985787726384 0.250711109492458 0.250540636580547 0.259981549825013 0.256037088613764 0.248546707348135 1 1 + 27446716 27447074 27446884.091 27445899 27447517 + gene protein_coding_gene FALSE TRUE AT1G72940.1 disease resistance protein (TIR-NBS class), putative similar to disease resistance protein (TIR-NBS class), putative [Arabidopsis thaliana] (TAIR:AT1G72950.1); similar to resistance gene analog PU3 [Helianthus annuus] (GB:AAL07535.1); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) 0.0816917987272943 0.756860511921896 0.469829981021211 1 1.0616448006976 11.4201406021691 0.0816917987272943 0.121857567399303
AT3G60800_at 6.81064525383909 6.87716612557985 7.07620030097571 6.77423680095484 6.64700725906097 6.277559712258 5.82638783643997 6.58764187523793 6.06548130389103 5.19180496658472 5.74430457719492 5.49876020285692 5.31943008701427 5.92374164712066 5.79810857559352 5.8585088036907 5.15330417662827 5.36072011264427 5.41684191917678 0.218802624263058 0.2293259567509 0.220818752220297 0.217712807930653 0.230003382411112 0.222576367750051 0.216588882928235 0.215465588436404 0.218407539769671 0.216037645270356 0.216514651817076 0.219374140294714 0.220153495012143 0.224575777568308 0.22250072836916 0.214668051415542 0.237153687194471 0.219626781834971 0.214668051415542 3 3|0 -|/ 22478495 22479800 22479229 22478148 22480567 - gene protein_coding_gene FALSE TRUE AT3G60800.1 zinc finger (DHHC type) family protein similar to zinc finger (DHHC type) family protein [Arabidopsis thaliana] (TAIR:AT4G22750.1); similar to DHHC zinc finger domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99421.1); similar to Os03g0804300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051618.1); contains InterPro domain Zinc finger, DHHC-type; (InterPro:IPR001594) 0.0961788942484684 0.75673849087501 0.469899298200715 1 1.06155444281291 12.1796818969069 0.0961788942484684 0.155903541778358
AT1G10320_at 5.58187033475776 5.36398440534405 5.62010963430858 5.32909841280073 5.75506490344138 5.34111860373126 5.14170435483610 4.96659613069385 5.28701894852593 5.69459543034549 5.66331994299729 5.36629485889226 4.97826580421892 5.49901664194113 4.82000722438929 5.73358505172849 5.42305039812749 5.14027890352438 6.18452154798679 0.200515787387374 0.197990773661902 0.197994757594272 0.199316839893366 0.205592161867513 0.204021857640836 0.204475356025284 0.198288077998354 0.197691266781483 0.196967162529132 0.204983807687162 0.200763237029924 0.204390593648968 0.196460025580736 0.199710611190922 0.200717475518102 0.210158652281689 0.200746981137236 0.201741163786500 1 1 - 3384169 3384707 3384404.091 3384166 3388375 - gene protein_coding_gene FALSE TRUE AT1G10320.1 U2 snRNP auxiliary factor-related similar to ATU2AF35A, RNA binding [Arabidopsis thaliana] (TAIR:AT1G27650.1); similar to RNA-binding re (GB:ABE91954.1); contains InterPro domain U2 auxiliary factor small subunit; (InterPro:IPR009145); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.073129436781389 -0.756515044646565 0.470026249934217 1 1.06138901112889 10.9124546785793 -0.073129436781389 0.10003940294782
AT1G63610_at 8.62356412632572 8.45511741766378 8.34956315128193 8.0683964794019 8.57319278005575 8.11102136491604 8.91409746475634 8.42273331843973 8.37313239477414 8.60816554216119 8.71400703796887 8.7769942137593 8.45801536856768 8.59517400153605 9.11776422832582 8.68856216589302 8.62341203045083 8.48095392286 8.58877659893116 0.109365125007557 0.109837854646334 0.113101429260838 0.107454303419103 0.115524647614052 0.11363648201546 0.115529464301336 0.106845266873739 0.107487887330424 0.112932943953379 0.107253548648348 0.110024685123826 0.112663810043977 0.112150375963010 0.112607752817194 0.106845266873739 0.117256072840726 0.112447593758412 0.106845266873739 1 1 - 23587341 23588453 23587693.545 23587184 23589390 - gene protein_coding_gene FALSE TRUE AT1G63610.1|AT1G63610.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14910.1); similar to Os02g0833400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048635.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87215.1) -0.0849162226672282 -0.756484118249843 0.470043822642979 1 1.06136611764401 17.0423200377513 -0.0849162226672282 0.12978755198167
AT1G17145_at 7.815948073254 7.5796012474293 7.90088079197462 7.4347900125312 8.64191558006263 8.10392518316152 7.84029219667938 7.14720720176428 7.03430000212302 7.42054512630196 7.01309953246958 6.8787802889456 7.07001574409599 7.24742598674843 6.84443403232002 7.47271128672184 7.48280089507505 7.34016696197185 7.69256744383847 0.187715314272402 0.187211304615562 0.200645295008452 0.190998789816160 0.186891816291194 0.211304727248256 0.18999139898863 0.188115185001298 0.210561599147646 0.188850230107347 0.193307476565610 0.185707159987474 0.183569581087086 0.192286274340461 0.199384528526112 0.189418762902859 0.195462784835737 0.182445962763039 0.183349525667335 1 1|0 -|/ 5860362 5861372 5860692.1 5860112 5862675 - gene protein_coding_gene FALSE TRUE AT1G17145.1 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G78420.1); similar to hypothetical protein DDBDRAFT_0205514 [Dictyostelium discoideum AX4] (GB:XP_642422.1); similar to Os02g0244100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046414.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.105412097886575 0.755796386373876 0.470434710517035 1 1.06085722819443 15.0836451350895 0.105412097886575 0.176727784082959
AT2G28305_at 7.29235156265442 7.49738479205254 7.781054297 7.97307299034627 8.24077789318267 7.82461986575742 8.33744744864396 7.91780596102078 6.42361014596101 6.63089814921416 6.28073700062698 6.46158911651715 6.74347646159167 6.67514384856879 5.75953250918675 6.69792369203166 7.1956627105248 5.654141244647 6.35839116805083 0.212183554419412 0.213531137895707 0.220646050423665 0.210840777030559 0.209451658866091 0.229944684795082 0.21021708866761 0.211769785231531 0.219272717027156 0.216489247186999 0.217870576049669 0.216181983806913 0.208447254077151 0.215046629772809 0.218177877741019 0.222748877753623 0.212359477632975 0.213032031971078 0.217346365627722 2 2|0 +|/ 12088339 12091348 12090518.333 12088190 12091741 + gene protein_coding_gene FALSE TRUE AT2G28305.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G37210.1); similar to Conserved hypothetical protein 730 [Medicago truncatula] (GB:ABE89044.1); contains InterPro domain Conserved hypothetical protein 730; (InterPro:IPR005269) 0.0780965778492546 0.755507765973526 0.470598817849937 1 1.06064378174645 14.3103105066842 0.0780965778492546 0.113241276398794
AT1G67350_at 10.1864481278778 10.3564737199067 10.1242792413312 10.1527265255240 10.2026023739319 10.0500372538812 10.3745340929279 10.6186342862065 10.3750367842135 10.2315212638313 10.4011468549565 10.5695609585098 10.3678644037827 10.5762176783046 10.4496205222295 10.4374136462137 10.0224791334767 10.4354651916712 10.2167603044989 0.103387239451656 0.0989065353127024 0.103217794968044 0.104565167489413 0.102474044707687 0.110227718174276 0.107370275019640 0.0988890126468148 0.116182078701888 0.103713746127473 0.105386050289694 0.104085054226252 0.101830610528152 0.106632483410706 0.103026824621943 0.102228194131638 0.107908183287925 0.0992271729504957 0.105721331454000 1 1 + 25239614 25240358 25239900.818 25238934 25240541 + gene protein_coding_gene FALSE TRUE AT1G67350.1|AT1G67350.2 unknown protein -0.0592898051337478 -0.753961196825896 0.471478823901799 1 1.05950123213588 20.5991722024439 -0.0592898051337478 0.0580646675362708
AT1G08550_at 10.8595229425259 10.8404472732714 10.7780909270493 10.6173437117992 11.0586217388443 10.8145931296773 10.9659422747866 10.7292268540075 10.8315319919896 10.8653349484611 11.1499600498932 10.8788675309268 11.0736065436905 11.1969670948090 10.7491393881408 10.7867402043089 11.0234746990866 10.9202361201813 10.7579011851585 0.0774842434568767 0.0752035497419706 0.0783425581380779 0.0771667966528672 0.0756153386468617 0.0808370283287757 0.0752035497419706 0.0782035094158454 0.0832861180184826 0.0769917725557699 0.0752035497419706 0.0752035497419706 0.0758099720909793 0.0785187806468056 0.0822656513700055 0.0752035497419706 0.0780003880709127 0.0775738053419992 0.0773647143082413 1 1 + 2708711 2709360 2708966.545 2706927 2709534 + gene protein_coding_gene FALSE TRUE AT1G08550.1|AT1G08550.2 NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1) Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex similar to violaxanthin de-epoxidase-related [Arabidopsis thaliana] (TAIR:AT2G21860.1); similar to violaxanthin deepoxidase [Chrysanthemum x morifolium] (GB:BAE79554.1); similar to violaxanthin de-epoxidase precursor (GB:AAC49373.1); similar to violaxanthin de-epoxidase [Coffea canephora] (GB:ABB70514.1); contains InterPro domain Calycin-like; (InterPro:IPR011038); contains InterPro domain Calycin; (InterPro:IPR012674); contains InterPro domain Violaxanthin de-epoxidase; (InterPro:IPR010788) 0.0612477263522755 0.75388029657095 0.471524886200805 1 1.05944152166210 21.7282886043699 0.0612477263522755 0.065163227749668
AT3G27020_at 10.2884818828014 10.3545656029031 10.6045437921854 10.7492739023262 10.8727087248784 10.7014466528111 10.5976800778004 10.7483223301152 10.3281603356633 10.4607967752471 10.3100945824392 9.99714464938636 10.5648971565423 10.2854696616632 10.1315993980248 10.4912816853868 10.1990512913280 10.0987835071441 10.3537044307876 0.0825594796384463 0.0812349051767368 0.0840027790979998 0.0805765717372643 0.0806014549336185 0.093565914205512 0.081320336413008 0.085104017936937 0.0965555583426144 0.0803682779888968 0.0805032567640117 0.08235251951144 0.0803682779888968 0.0837546551496436 0.0803682779888968 0.0816739943982266 0.0925873915945744 0.0877149108121965 0.0825233074232582 3 3 - 9962869 9963362 9963129.182 9962556 9965834 - gene protein_coding_gene FALSE TRUE AT3G27020.1 YSL6 (YELLOW STRIPE LIKE 6); oligopeptide transporter Arabidopsis thaliana metal-nicotianamine transporter YSL6 similar to YSL4 (YELLOW STRIPE LIKE 4), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G41000.1); similar to YSL5 (YELLOW STRIPE LIKE 5), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT3G17650.1); similar to YSL7 (YELLOW STRIPE LIKE 7), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT1G65730.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE91885.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE91886.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAE44205.1); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813) 0.0568169277842894 0.753797681844592 0.471571927709848 1 1.05938055149846 20.9349665817553 0.0568169277842894 0.0481258916606695
AT2G21290_at 9.13319579196617 9.16068745467213 9.11658800056678 9.11033565469602 9.18432406423354 9.05990355436571 8.90141720955311 9.05088640824945 9.08697067794231 9.1433904403446 8.92054841260826 8.9943661434401 8.62721880702995 9.00181101906435 9.12657448007024 9.03005541869705 8.86209670307643 8.96879996156311 9.08650444896792 0.094097455879226 0.096157661024196 0.098725063390722 0.0958308099974954 0.0963025996052168 0.0934088751403555 0.096275723920187 0.09908281430598 0.103283061422878 0.0942436110098134 0.0946933410796123 0.0943409739008286 0.0975470783727025 0.101405588111119 0.0948098801282877 0.093952129926663 0.100655846292978 0.0992698239731963 0.0966546713681712 2 2 + 9119977 9120208 9120059 9119937 9120411 + gene protein_coding_gene FALSE TRUE AT2G21290.1 Identical to 30S ribosomal protein S31, mitochondrial precursor [Arabidopsis Thaliana] (GB:Q9SJU8); similar to Os09g0528100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063735.1) -0.0539734426013159 -0.753637757890312 0.471662998458435 1 1.05926254308291 18.1131951292605 -0.0539734426013159 0.0340070635199553
AT4G13720_at 5.63898409962624 5.35452535732891 4.70000251837547 5.03098225055603 5.56361057622097 5.43746425268634 5.52669002570641 5.78533918625062 5.91399008545216 5.44523215150397 6.22498380996609 6.39381525443076 5.83329152378138 6.32550623775587 6.49938611549612 6.10423818609422 5.1277679196934 6.21890792683476 5.31829558388202 0.215974213859231 0.215647004304927 0.223108248395257 0.214137836153415 0.214167861487438 0.227474914420290 0.219781414627561 0.213627950295941 0.223328371466613 0.22420468022997 0.21640795289864 0.215831885212768 0.210131702177434 0.221985828263708 0.212989101291362 0.221715080678752 0.22462967983288 0.218685838666636 0.216513212166224 4 4|0 -|/ 7967180 7968759 7967894.75 7966948 7968921 - gene protein_coding_gene FALSE TRUE AT4G13720.1 inosine triphosphate pyrophosphatase, putative / HAM1 family protein similar to Os10g0457500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064763.1); similar to putative HAM1 protein [Oryza sativa (japonica cultivar-group)] (GB:AAK54301.1); contains InterPro domain Ham1-like protein; (InterPro:IPR002637) 0.0692223735210894 0.751893444590893 0.472657067058787 1 1.05797681535371 11.2047796476952 0.0692223735210894 0.0904658284259846
AT2G26990_at 6.90585139285501 7.05951691993558 7.09216904830087 7.02940836032002 7.50570734158935 7.37858992071488 7.10698301274221 6.92104543797109 7.09401216109285 6.58608575361854 6.85585577242343 6.78783787714564 6.62479065370549 6.81363358642805 6.83709970090524 6.90113188974269 6.87124632347801 6.75220340851762 7.15540733269556 0.151076289287006 0.155842543582256 0.156796104566212 0.164063677567409 0.155051906882974 0.16928884361865 0.146643557324784 0.161085285092190 0.155912404325744 0.152562553592806 0.153287536091163 0.158248585284274 0.153695795649723 0.154633881018129 0.162605512048493 0.146643557324784 0.160563348864560 0.154067541312771 0.151341261727374 2 2|0 -|/ 11526770 11527733 11527109.111 11526585 11529665 - gene protein_coding_gene FALSE TRUE AT2G26990.1 FUS12 (FUSCA 12); binding Represses photomorphogenesis and induces skotomorphogenesis in the dark. Identical to COP9 signalosome complex subunit 2 (Signalosome subunit 2) (FUSCA protein 12) (FUSCA12) (CSN2) [Arabidopsis Thaliana] (GB:Q8W207;GB:Q94A24;GB:Q9ZVD8); similar to ATS9 (19S PROTEOSOME SUBUNIT 9), binding [Arabidopsis thaliana] (TAIR:AT1G29150.1); similar to putative COP9 signalosome complex subunit 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD81083.1); similar to Os01g0279200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042746.1); similar to Proteasome component re (GB:ABE91558.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.0567129812981313 0.751526795859433 0.472866190916601 1 1.05770688770643 14.0002305879764 0.0567129812981313 0.048419327600755
AT1G71710_at 6.12661939012943 6.19887816547656 6.12007955231225 6.1998289356373 6.69127088402532 6.48500322182123 7.30363954199583 7.34719721580268 6.74445617923671 6.92627428791975 7.73117811467926 7.39406484339325 7.01013628729774 7.39834956691518 7.27276153855034 7.06598808354287 7.03270306818782 7.22752381029768 6.68855568423659 0.199067084332833 0.187438212708735 0.186385182379116 0.190190331130208 0.185367806219024 0.191311385889089 0.185109856211094 0.184810498452609 0.199827049627172 0.198885303121078 0.183368503177672 0.182161382319113 0.179730542738805 0.189516917004535 0.194406520524679 0.187220568893683 0.198347356363890 0.181627481413969 0.191974682201056 1 1 - 26977506 26978224 26977846.364 26977229 26980493 - gene protein_coding_gene FALSE TRUE AT1G71710.1 inositol polyphosphate 5-phosphatase, putative similar to IP5PI (INOSITOL POLYPHOSPHATE 5-PHOSPHATASE I), inositol-polyphosphate 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G34120.1); similar to Os01g0716800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044072.1); similar to putative inositol-1,4,5-trisphosphate 5-phosphatase [Oryza sativa (japonica cultivar-group)] (GB:AAS75232.1); similar to Os01g0183300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042225.1); contains InterPro domain Inositol polyphosphate related phosphatase; (InterPro:IPR000300); contains InterPro domain Endonuclease/exonuclease/phosphatase; (InterPro:IPR005135) 0.0550607585374523 0.750861179104069 0.473245990304159 1 1.05721715039692 13.5855730540196 0.0550607585374523 0.0409613166407046
AT1G05190_at 10.0131187047232 10.0409311623311 9.52271345746578 9.5348487833660 10.3505374857229 9.93742965906596 10.2976241861473 10.0402314349745 9.87163622139895 10.3799575450774 10.3681561885664 10.6726311083473 10.0932280184945 10.1331845165175 10.7177090865482 10.5244844328004 10.1758274727745 10.1688473335298 10.4355822970298 0.0897791447089916 0.0871577435092414 0.0943540220391836 0.0932726858166403 0.0876956814521604 0.0898204981790989 0.0907675551923135 0.0896482837334079 0.0965920826733708 0.0916310481656112 0.0920688065807131 0.0883851943716732 0.0880086086143264 0.0938845646657587 0.0902593337985525 0.0887020052747759 0.0870031210020886 0.0911186356955067 0.0941986439783819 1 1|0 -|/ 1502585 1503195 1502915.6 1502343 1503829 - gene protein_coding_gene FALSE TRUE AT1G05190.1 EMB2394 (EMBRYO DEFECTIVE 2394); structural constituent of ribosome Identical to 50S ribosomal protein L6, chloroplast precursor (RPL6) [Arabidopsis Thaliana] (GB:O23049); similar to ribosomal protein L6 family protein [Arabidopsis thaliana] (TAIR:AT2G18400.1); similar to Os03g0751400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051292.1); similar to putative ribosomal protein CtrL6e, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAP68351.1); similar to Os03g0356300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050139.1); contains InterPro domain Ribosomal protein L6; (InterPro:IPR000702); contains InterPro domain Ribosomal protein L6, signature 1; (InterPro:IPR002358) -0.0669470968884516 -0.749887112860127 0.473802149134082 1 1.05650114421096 20.2600879629909 -0.0669470968884516 0.0843949651216298
AT1G60010_at 10.1399906126399 10.3204677143054 10.1177055359713 10.1514280695506 10.8172951546633 10.4622483941916 10.4184441251817 10.4974175609151 10.3746222333942 10.0554944458822 10.4492016919762 10.4506469921358 10.3771307178663 10.4847972462172 10.2687747799629 10.5026360420039 9.80465624363577 10.0275714565468 10.2113257905018 0.105768505077544 0.105768505077544 0.111039623736190 0.105768505077544 0.113489199597375 0.113148319589012 0.116449582910493 0.105768505077544 0.119116052308437 0.112389043331474 0.111116739865464 0.106515082491138 0.107137749252710 0.113740010214005 0.112449393395841 0.107629117825484 0.127607034554859 0.115852364123079 0.112440919751417 1 1|0 -|/ 22099326 22100064 22099834.5 22099025 22100242 - gene protein_coding_gene FALSE TRUE AT1G60010.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10530.1); similar to T10O24.15, related [Lycopersicon esculentum] (GB:AAX95759.1) 0.0624760125170207 0.749636042895463 0.473945570677923 1 1.05631672088927 20.6203701723703 0.0624760125170207 0.0705087223189244
AT2G02040_at 9.6354925238005 9.89222023597942 9.46549209520736 9.8836572992764 10.1147580111345 9.96108363345325 9.5256260894133 9.5236233240983 9.34362919909864 8.97156716229313 9.14779703382817 8.80733594080325 9.19844293551846 9.2857314383771 8.74369635424355 9.02759484714706 8.64476891792173 9.20940514614301 8.93427150069141 0.116139046424169 0.118065778859224 0.118884245959291 0.114662072830808 0.119901235880704 0.120124503676704 0.125019175888075 0.121295672479969 0.120630697913473 0.118386905173209 0.117747674003905 0.117136786834735 0.119390736181919 0.117572838004780 0.124747019591781 0.11495112091994 0.144439975362865 0.11969135727629 0.118598498788672 2 2 + 489141 489645 489358.091 487422 489830 + gene protein_coding_gene FALSE TRUE AT2G02040.1 ATPTR2-B (NITRATE TRANSPORTER 1); transporter Encodes a peptide transport gene that mediates the transport of di- and tripeptides. Identical to Peptide transporter PTR2 (Histidine-transporting protein) (PTR2) [Arabidopsis Thaliana] (GB:P46032); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT3G54140.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G62200.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT2G02020.1); similar to LeOPT1 [Lycopersicon esculentum] (GB:AAD01600.1); similar to peptide transporter 1 [Vicia faba] (GB:AAP44102.1); similar to amino acid/peptide transporter [Prunus dulcis] (GB:AAF20002.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.0684739195825252 0.7493871407273 0.474087781836945 1 1.05613394273270 18.7958704169331 0.0684739195825252 0.088982931378726
AT4G27060_at 6.45099398542272 6.75260567401739 5.74881046119883 5.87499630522063 6.68759692506955 6.13058823532376 6.10528236573668 6.49131218123543 6.0413810156494 5.66357073208458 6.16466132840943 6.56086509451109 6.22445661393678 6.40509955318903 6.31427942903908 6.18256170889467 5.43924115301819 5.84557450081267 6.20820573284723 0.205077790094074 0.205008991624101 0.201316519422757 0.198749411587666 0.200033939517104 0.219032136943055 0.202134282919266 0.201958001837179 0.223987425609889 0.204452396531892 0.205958532401256 0.203367296531628 0.201810631520708 0.201946174507959 0.205100818513589 0.198749411587666 0.218178283427723 0.225162063634678 0.199361706425803 4 4 - 13581650 13582187 13581910.545 13581407 13585161 - gene protein_coding_gene FALSE TRUE AT4G27060.1 TOR1 (TORTIFOLIA 1) Encodes a novel, plant-specific microtubule-associated protein that regulates the orientation of cortical microtubules and the direction of organ growth. The protein plays a role in control of microtubule dependent anisotropic cell elongation. spr2 mutant rosette leaves, cauline leaves, roots, petioles and petals curl in an anticlockwise direction. Identical to Microtubule-associated protein TORTIFOLIA1 (Microtubule-associated protein SPIRAL2) (Protein CONVOLUTA) (TOR1) [Arabidopsis Thaliana] (GB:Q9T041;GB:Q68VK4;GB:Q84MA0); similar to binding [Arabidopsis thaliana] (TAIR:AT1G50890.1); similar to Os07g0520400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059802.1); similar to potyviral helper component protease-interacting protein 2 [Solanum tuberosum subsp. andigena] (GB:CAD45375.1); similar to putative potyviral helper component protease-interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19987.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain HEAT; (InterPro:IPR000357) -0.084255320350283 -0.749029562586117 0.474292134110791 1 1.055871451798 12.3368457247798 -0.084255320350283 0.130213736890540
AT3G20070_at 4.79082928782646 4.98729099544401 4.63456503873225 4.91138921212275 5.98905096542258 5.15668715589336 6.11643296613029 5.83453649703424 4.17671906164515 4.82348394078355 4.98731431150448 5.08919236643534 5.25289840607326 5.21075755320568 4.61115495848162 5.11856497810951 5.09722392396405 4.57477267179060 5.7886925833406 0.205446604382833 0.202778458870327 0.204744893580608 0.200833419131468 0.206293214009645 0.213342051764867 0.216927337716495 0.211048461494126 0.216932456910068 0.207641748794054 0.203110621507394 0.200833419131468 0.205450424011323 0.216487186083784 0.212953871305101 0.201374523686409 0.214088009311961 0.206148869069741 0.200833419131468 3 3|0 -|/ 7004963 7005696 7005220.778 7004678 7006924 - gene protein_coding_gene FALSE TRUE AT3G20070.1|AT3G20070.2 TTN9 (TITAN9) Encodes a plant-specific protein of unknown function. Mutant embryos contain at most four small cells. The endosperm nucleoli are enlarged. Gene is expressed in siliques based on EST information. similar to hypothetical protein MtrDRAFT_AC135416g39v1 [Medicago truncatula] (GB:ABE81966.1) -0.0981231546467725 -0.747393771129935 0.475227704377153 1 1.05467203472051 10.2637811438851 -0.0981231546467725 0.163032185414508
AT1G72640_at 6.17525940745119 5.10400409462538 5.17588460082493 4.21337758528408 6.17551262378628 4.67176926232584 6.99821189899659 5.2956798830454 5.07012535173538 5.57045435965385 5.60728494433766 6.40903523971652 5.11959907952296 5.63464490111281 6.80970760920876 6.4224269791364 4.73119533647647 5.32902271234285 5.60051327951764 0.309704227399531 0.308781963649033 0.308781963649033 0.308781963649033 0.315122407717646 0.321656542410067 0.320072727340249 0.312552898792541 0.314830522823892 0.312419272923575 0.317673130028711 0.314370164294575 0.315867648394417 0.313145706016599 0.313207398086092 0.308781963649033 0.344777960451378 0.314592850166851 0.318649604734453 1 1|0 -|/ 27351466 27351753 27351620.833 27349923 27351918 - gene protein_coding_gene FALSE TRUE AT1G72640.1|AT1G72640.2 similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT4G31530.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAR06314.1); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035) -0.244992933189088 -0.746357558174195 0.475820974669586 1 1.05391342503660 11.0619935514762 -0.244992933189088 0.465445214790555
AT2G38680_at 4.54925145568659 4.76714626019968 4.59711678191902 4.80969761898881 4.80880532105786 5.11441591950785 4.82888558582629 4.92002624371562 5.2017286322257 4.67454697316878 5.35292857639853 4.62538948632779 4.29596442292 4.66781975579881 4.82518990874192 5.07834480370712 4.50119561939821 4.66811608574184 4.96172547437628 0.197164698460779 0.194351517211885 0.198759898394586 0.194281868647504 0.191714654352649 0.202922794003186 0.192661174300579 0.200987223534161 0.191714654352649 0.196424487234964 0.191714654352649 0.197969862944483 0.19452796792848 0.192939566994625 0.207072722404194 0.191714654352649 0.197874867723407 0.194908734079816 0.198681380826431 2 2 - 16181539 16182359 16181999.909 16181536 16182951 - gene protein_coding_gene FALSE TRUE AT2G38680.1 pyrimidine 5'-nucleotidase family protein / uridine monophosphate hydrolase-1 (UMPH-1) family protein similar to Os03g0648900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050781.1); similar to pyrimidine 5'-nucleotidase -related [Oryza sativa (japonica cultivar-group)] (GB:AAU89200.1); contains InterPro domain HAD-superfamily subfamily IE hydrolase; (InterPro:IPR006434) -0.0639751267664833 -0.746197750341919 0.475912513451202 1 1.05379651125300 9.64835261951414 -0.0639751267664833 0.0762959557308335
AT1G66200_at 11.6767347613415 11.8539330487400 11.9752778273563 11.9673655543462 11.9825646738384 11.8444108238022 12.2764704530518 12.3311229427587 11.7840673233255 12.1646732435423 12.0838336687452 11.7972865332787 12.2606985069142 12.0217365255587 11.5718554452269 12.3288149207036 12.1306409929377 11.8335925025685 12.1123671798556 0.0753226017331622 0.0734902280419573 0.07394925584962 0.0762482777572775 0.074321720712824 0.0776245509469096 0.0749646702009754 0.0747388080442082 0.0850209827898968 0.0754464516371968 0.0780335160426518 0.074209893468662 0.0767891912428332 0.0827108147175269 0.083266716177004 0.0749717333267474 0.0790547887951249 0.0795170036599844 0.0779539995737362 1 1 - 24659187 24659978 24659584.545 24658873 24661301 - gene protein_coding_gene FALSE TRUE AT1G66200.1|AT1G66200.2 ATGSR2 (Arabidopsis thaliana glutamine synthase clone R2); glutamate-ammonia ligase encodes a cytosolic glutamate synthetase, this enzyme has low affinity with substrate ammonium Identical to Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (GLN1;2) (Glutamate--ammonia ligase GLN1;2) (GLN1-2) [Arabidopsis Thaliana] (GB:Q8LCE1;GB:Q9C8C7); similar to ATGSKB6 (Arabidopsis thaliana glutamine synthase clone KB6), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT3G17820.1); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to GLN1,4 (Glutamine synthetase 1,4), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G16570.1); similar to Gln synthetase (GB:1804333C); similar to cytosolic glutamine synthetase [Brassica napus] (GB:CAA73063.1); similar to glutamine [Brassica napus] (GB:CAA54151.1); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147)|Identical to Glutamine synthetase cytosolic isozyme 1-2 (EC 6.3.1.2) (GLN1;2) (Glutamate--ammonia ligase GLN1;2) (GLN1-2) [Arabidopsis Thaliana] (GB:Q8LCE1;GB:Q9C8C7); similar to ATGSR1 (Arabidopsis thaliana glutamine synthase clone R1), glutamate-ammonia ligase [Arabidopsis thaliana] (TAIR:AT5G37600.1); similar to glutamine [Brassica napus] (GB:CAA54151.1); contains InterPro domain Glutamine synthetase, catalytic region; (InterPro:IPR008146); contains InterPro domain Glutamine synthetase, beta-Grasp; (InterPro:IPR008147) -0.0544862217766529 -0.745491710909106 0.476317073728452 1 1.05328023995174 24.0004483286041 -0.0544862217766529 0.0400408322635553
AT3G15900_at 8.0978622841055 8.36995274081205 8.10126787685337 8.21020153848587 8.35324203261002 8.03641137794104 8.03949492686117 8.58571869182241 7.8299597264639 8.12756239746016 7.4492928592081 8.20918631037456 8.04084334894346 8.03150625112978 8.1085278154898 8.54473766198635 7.9346224391756 7.9563806088342 8.33107416463111 0.135123342268382 0.132250931387872 0.142258313625585 0.133788381181670 0.136387032964577 0.133644428638236 0.131811622466741 0.128870262738325 0.147578077098183 0.137341616491158 0.142444692077152 0.130953014413330 0.147833970638813 0.136200801127340 0.142755325604310 0.135054608893111 0.136695586462846 0.134509602249644 0.129360069411562 3 3 - 5376412 5376940 5376661.545 5376257 5377185 - gene protein_coding_gene FALSE TRUE AT3G15900.1 similar to Os02g0804400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048433.1) -0.079894027693349 -0.745329327485953 0.476410150980934 1 1.05316156165978 16.2895618960587 -0.079894027693349 0.120474117430789
AT2G41110_at 6.94272446738915 7.36526775969386 6.57454972175536 6.46415264792908 6.24280182382496 6.27197536074809 6.07821071197522 6.48423157428285 7.69170537612248 6.05668419548004 7.93741973345694 7.89911522887662 6.38089705064272 7.36898973542481 7.19039252436013 7.05161707687772 6.0075076812281 6.28368363448428 5.86937360923275 0.213325653571305 0.207398973201342 0.213670177848009 0.207796705626546 0.209380311926763 0.212287965635622 0.213198301119716 0.210718847047077 0.217059419784007 0.209646366713946 0.219499192461568 0.213444817754285 0.212724757213322 0.214090542734060 0.206567764939975 0.206740041524806 0.21198676060864 0.208522501813175 0.218450496333805 2 2 + 17147467 17148240 17147927.273 17147389 17148509 + gene protein_coding_gene FALSE TRUE AT2G41110.1 ATCAL4 (calmodulin-related protein 4); calcium ion binding Encodes a touch-inducible calmodulin-related protein. Identical to Calmodulin-7 (CaM-7) (CAM7) [Arabidopsis Thaliana] (GB:P59220); Identical to Calmodulin-6 (CaM-6) (CAM6) [Arabidopsis Thaliana] (GB:Q03509); Identical to Calmodulin-2/3/5 (CaM-2/3/5) (CAM5) [Arabidopsis Thaliana] (GB:P25069); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to CAM3 (CALMODULIN 3), calcium ion binding [Arabidopsis thaliana] (TAIR:AT3G56800.1); similar to calmodulin 4 [Daucus carota] (GB:AAQ63461.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0732298498931323 0.745004715087958 0.476596252403046 1 1.05292438520761 13.3300928718402 0.0732298498931323 0.103317313259621
AT1G62740_at 7.75471227871936 7.84386589512796 7.98353048209032 7.75246304903612 7.87261177218251 7.50877470367369 7.88989372627429 7.54159005160714 7.52845388272013 7.49605891832593 7.58990991733128 7.8501713621673 7.54271746892867 7.80529503124937 7.61123995347084 7.66566602186226 7.33318274434615 7.36676819576615 7.4026858947593 0.134413488970161 0.137067659081323 0.140553733639967 0.137054439668297 0.137816044407591 0.146834413052949 0.141926019207940 0.146719971046754 0.140184922205690 0.140374393125724 0.140937184499523 0.137633829099902 0.134639199050899 0.139687255941992 0.135266068240349 0.134938572259589 0.147225303374071 0.138698720045227 0.139864100465307 1 1|0 +|/ 23236071 23237011 23236580.7 23234621 23237208 + gene protein_coding_gene FALSE TRUE AT1G62740.1 stress-inducible protein, putative similar to stress-inducible protein, putative [Arabidopsis thaliana] (TAIR:AT1G12270.1); similar to binding [Arabidopsis thaliana] (TAIR:AT4G12400.2); similar to Os02g0644100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047563.1); similar to Os04g0538000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053429.1); similar to Heat shock protein STI (Stress-inducible protein) (GmSTI) (GB:Q43468); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Heat shock chaperonin-binding; (InterPro:IPR006636) 0.0708577260509733 0.74396342481641 0.477193546601055 1 1.05216417684379 15.3041061125849 0.0708577260509733 0.0971318364666072
AT4G11280_at 5.18543102675191 5.41916037100004 6.88116808609636 7.46470346910239 5.22295979551216 4.68555778379038 5.94284574397307 5.6499009502417 5.4232531047383 5.24675822640249 4.81410022508762 5.33086563708607 4.33744138497689 4.91279066340868 4.52588767363566 4.53424358115609 4.13604826501408 4.56626568004124 5.36325542136416 0.227985205383405 0.220968081109883 0.231987322543544 0.231192014665973 0.217657324971536 0.223085078420045 0.244359523690277 0.233498583738848 0.245105439997891 0.220065328203708 0.222222355625194 0.220945988825648 0.223515018101422 0.229230170158842 0.223366139642960 0.227411695322542 0.222919708626188 0.229475261161118 0.216611136302746 4 4 + 6865319 6865894 6865564.727 6864093 6866112 + gene protein_coding_gene FALSE TRUE AT4G11280.1 ACS6 (1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID (ACC) SYNTHASE 6) encodes a a member of the 1-aminocyclopropane-1-carboxylate (ACC) synthase (S-adenosyl-L-methionine methylthioadenosine-lyase, EC 4.4.1.14) gene family Identical to 1-aminocyclopropane-1-carboxylate synthase 6 (EC 4.4.1.14) (ACC synthase 6) (S-adenosyl-L-methionine methylthioadenosine-lyase 6) (ACS6) [Arabidopsis Thaliana] (GB:Q9SAR0;GB:O82719;GB:Q9SUT3); similar to ACS1 (ACC SYNTHASE 1), 1-aminocyclopropane-1-carboxylate synthase [Arabidopsis thaliana] (TAIR:AT3G61510.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Brassica juncea] (GB:CAA51227.1); similar to ACC synthase [Carica papaya] (GB:AAC98809.1); similar to 1-aminocyclopropane-1-carboxylate synthase [Brassica oleracea] (GB:CAA57724.1); contains InterPro domain 1-aminocyclopropane-1-carboxylate synthase; (InterPro:IPR001176); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) -0.0927270507002725 -0.74344217005328 0.477492725931041 1 1.05178397431649 10.8010297231264 -0.0927270507002725 0.151831235339872
AT4G21210_at 10.6480600655280 10.6670353309187 10.7731167623056 10.6795754042199 11.0465623193651 10.5902468963509 11.4868711876787 11.1563727577406 11.1285232940134 11.1965067357412 11.5156604073099 11.3488626616635 11.2402728266145 11.4027846064025 11.6239230577552 11.3999852837212 11.2888254354091 11.4656562118282 10.8271332228678 0.0666447366319357 0.0648776231292636 0.0661673672656343 0.0646734048241757 0.0645437378811289 0.0676720073888289 0.068718513369129 0.0685662882466105 0.0736111186341756 0.0657398613534334 0.0645350688556284 0.0636956186905872 0.066240761894306 0.0669911012118307 0.0688370212929522 0.0636956186905872 0.068741479215168 0.0685490956840479 0.0643221104687276 4 4 + 11307952 11308571 11308200.909 11306955 11308752 + gene protein_coding_gene FALSE TRUE AT4G21210.1|AT4G21210.2 phosphoprotein phosphatase/ protein kinase| Identical to UPF0085 protein At4g21210 [Arabidopsis Thaliana] (GB:O49562); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G01200.1); similar to putative ATP/GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAC45149.1); contains InterPro domain Protein of unknown function DUF299; (InterPro:IPR005177) 0.0714078686122035 0.74303526853195 0.477726355707415 1 1.05148734172147 22.1117137882862 0.0714078686122035 0.0988932870543652
ATCG00680_at 10.9791220210777 12.3399184164255 11.7535233111368 12.0812645372293 11.3468115427749 11.1150210886011 11.7647000304757 12.1760455637974 12.0199624899795 12.0752524607599 12.6532593055197 12.7955989215703 12.8159405548542 12.6648690326971 12.5582659079252 12.7947513762742 12.1138138980563 12.5228636070699 12.1851141694468 0.0838274805733593 0.0809705972215127 0.0827279937868419 0.0817984588129736 0.0812148257692714 0.0928130982738215 0.0809705972215127 0.0834395337033093 0.0850927020825972 0.0809705972215127 0.0837066174866905 0.0810412040598218 0.0840691050690671 0.0832070943972838 0.082955193273131 0.0815960389955802 0.0901722318538358 0.0824417660572012 0.0818746685595603 C C + 73336 73777 73560.3 72371 73897 + gene protein_coding_gene FALSE TRUE ATCG00680.1 encodes for CP47, subunit of the photosystem II reaction center. Identical to Photosystem II P680 chlorophyll A apoprotein (CP-47 protein) (psbB) [Arabidopsis Thaliana] (GB:P56777); similar to photosystem II CP47 chlorophyll apoprotein [Coffea arabica] (GB:YP_817508.1); similar to photosystem II 47 kDa protein [Nicotiana tabacum] (GB:NP_054526.1); similar to photosystem II CP47 chlorophyll apoprotein [Gossypium hirsutum] (GB:YP_538962.1); contains InterPro domain Photosystem antenna protein-like; (InterPro:IPR000932) 0.140342948712635 0.742774003084685 0.47787640503872 1 1.05129695267749 24.0487324967188 0.140342948712635 0.255635954777355
AT2G46920_at 4.89443119439206 5.7049425784826 4.56994328303006 4.48394126226052 5.71705256870692 5.49765740042421 5.39648270443113 4.9367326220272 4.76913681338541 5.72624367160336 5.62060416345258 5.4901651523538 4.75704197005493 5.73918453253372 4.49768230911477 5.47129833627298 5.23455410681328 4.71300008736555 5.17124062326968 0.300577451951262 0.297603142221148 0.307872462359709 0.305714929662322 0.299481173068853 0.306290706202077 0.295995665923048 0.315510170123506 0.325734537974153 0.295995665923048 0.295995665923048 0.298437458912867 0.303188275824821 0.312042140794446 0.300674625926037 0.309584086458417 0.303591907746728 0.312076108751348 0.299742937774284 2 2 - 19285432 19286100 19285664.4 19285056 19288829 - gene protein_coding_gene FALSE TRUE AT2G46920.1|AT2G46920.2 POL (POLTERGEIST); protein phosphatase type 2C Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. similar to PLL1 (POLTERGEIST LIKE 1), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT2G35350.1); similar to protein phosphatase 2C, putative [Medicago truncatula] (GB:ABE88022.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.0988821750343845 -0.742110765964398 0.478257451096995 1 1.05081390055721 10.3564721358850 -0.0988821750343845 0.166333300236223
AT1G26160_at 6.4006982317509 6.36421629158707 6.08552773552998 5.74420877409672 6.62676198578274 5.95928605494258 6.97047260970211 6.62104828277249 5.81902799875513 5.20045876026847 6.03533104979846 5.67047957046439 5.24190926722283 5.71860342753162 6.27971648189726 5.9333612527396 5.24079994633979 4.83938016881761 4.91828725188102 0.184573062062755 0.189318577404464 0.187121113428117 0.188666869631544 0.187842167695288 0.203932752253892 0.199451751526198 0.208243101053856 0.199126048623651 0.202180656886601 0.188253241903547 0.185242509396846 0.189600986768971 0.198862783823828 0.194042301834425 0.184573062062755 0.190026760842414 0.197858640667422 0.204536557578429 1 1|0 -|/ 9044806 9046721 9045914.111 9044428 9046966 - gene protein_coding_gene FALSE TRUE AT1G26160.1 metal-dependent phosphohydrolase HD domain-containing protein similar to metal-dependent phosphohydrolase HD domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23820.2); similar to Os02g0179100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046081.1); similar to HD domain containing 2 [Homo sapiens] (GB:AAH66332.1); similar to HDDC2 protein [Homo sapiens] (GB:AAH03357.2); contains InterPro domain Metal-dependent phosphohydrolase, HD region; (InterPro:IPR003607); contains InterPro domain Metal-dependent phosphohydrolase, HD subdomain; (InterPro:IPR006674) -0.0889032038659502 -0.742038441691838 0.478299015086907 1 1.05076124765719 11.8127969870554 -0.0889032038659502 0.143275366834609
AT2G21600_at 8.63937478190752 8.88974681680795 9.01117756932357 8.86174358865694 9.46451010761263 8.6771426096422 9.18386242130796 9.20482901135308 9.19466131099703 8.6975519230939 9.41719641191685 9.13693329798926 9.19986053445665 9.20257484463006 8.79035241463408 9.21396623315357 8.4776328525085 8.71905119456292 8.701654857862 0.186407375099636 0.170968115132311 0.187131450708681 0.180032483418812 0.172319605348368 0.193787485712761 0.173385081115941 0.167862690436354 0.179234559940068 0.173535552581733 0.175999594257057 0.167862690436354 0.175159833249989 0.174279117697577 0.178684351822482 0.170740104534093 0.190645976078061 0.183359732573544 0.172991858676211 2 2 + 9250650 9251606 9251009 9249881 9251913 + gene protein_coding_gene FALSE TRUE AT2G21600.1 ATRER1B (Arabidopsis thaliana endoplasmatic reticulum retrieval protein 1B) Key player of retrieval of ER membrane proteins Identical to Protein RER1B (AtRER1B) (RER1B) [Arabidopsis Thaliana] (GB:O48671;GB:Q9SIK0); similar to ATRER1A (Arabidopsis thaliana endoplasmic reticulum retrieval protein 1A) [Arabidopsis thaliana] (TAIR:AT4G39220.1); similar to Retrieval of early ER protein Rer1 [Medicago truncatula] (GB:ABE85945.1); contains InterPro domain Retrieval of early ER protein Rer1; (InterPro:IPR004932) 0.089631743314274 0.740812089444026 0.479004143263645 1 1.04986912807441 17.9337076984760 0.089631743314274 0.145345710539692
AT2G13540_at 7.36481827005655 7.6650744062343 7.42171162726522 7.79779699641022 7.62694783709598 7.45084850759214 7.43982409817986 7.30688008648324 5.95778282217775 6.78304754636708 6.30401636852779 6.77346115683969 6.35299230561175 6.48953824438636 5.7594163402995 6.67259883340159 6.40307482859441 6.45840457608122 6.4431631372033 0.221917795498730 0.218630424356424 0.23126204823272 0.223672513427590 0.220102748480171 0.222999673087447 0.220483556220270 0.221865288977282 0.252116557327702 0.219879452888551 0.224739255386941 0.220037111876536 0.229664260831688 0.234515538622495 0.228167491057943 0.218630424356424 0.2270206935594 0.235354419363904 0.220855996565508 2 2|0 +|/ 5649167 5649870 5649538.889 5643966 5650039 + gene protein_coding_gene FALSE TRUE AT2G13540.1 ABH1 (ABA HYPERSENSITIVE 1) encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signalling. Mutants exhibit hypersensitive response to ABA in germination inhibition. similar to nuclear cap-binding protein CBP80 [Oryza sativa subsp. japonica] (GB:AAG54079.1); similar to Os03g0347200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050097.1); similar to Initiation factor eIF-4 gamma, middle [Medicago truncatula] (GB:ABD32555.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890) 0.0686001783270738 0.740783651790832 0.479020502337217 1 1.04984845609516 13.9074138954816 0.0686001783270738 0.0916175377445648
AT3G29035_at 8.43211396607315 8.78837274841026 9.42186939189686 9.32009858901637 10.4237991404177 10.1138308268201 8.81994970050358 8.48783594786075 6.68915750949416 7.44264481510618 4.88777813404374 1.95915463976077 7.90515416636441 6.96418735556469 2.65574554833180 7.54530980273774 9.62947619049756 5.98371672003687 6.82322807099641 0.244188024996366 0.249233234169322 0.244196505287521 0.244188024996366 0.244188024996366 0.244188024996366 0.247686951839247 0.251961499034214 0.258840046318992 0.244519368439054 0.252130649476211 0.287643056617809 0.245684688698722 0.244832006994316 0.273128776773779 0.252275976357605 0.253452133407555 0.244188024996366 0.254224739942923 3 3 + 11035617 11036191 11035961.091 11034902 11036545 + gene protein_coding_gene FALSE TRUE AT3G29035.1 ANAC059/ATNAC3 (Arabidopsis NAC domain containing protein 59); protein heterodimerization/ transcription factor Encodes a protein with transcription factor activity. Note: this protein (AT3G29035) on occasion has also been referred to as AtNAC3, not to be confused with the AtNAC3 found at locus AT3G15500. similar to ANAC092/ATNAC2/ATNAC6 (Arabidopsis NAC domain containing protein 92), protein heterodimerization/ protein homodimerization/ transcription factor [Arabidopsis thaliana] (TAIR:AT5G39610.1); similar to NAC5 protein [Glycine max] (GB:AAX85982.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE82475.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0720682920637143 0.740201083634786 0.479355710755866 1 1.04942512583200 15.6891465146412 0.0720682920637143 0.101448640524293
AT3G13050_at 5.59511027201494 5.97734678390102 5.61991199420135 5.48069829701082 5.84750153423542 5.46666092533516 5.18835965472376 5.22088942842041 5.22274229606012 4.51904037208255 4.5231953747355 4.62318486447104 4.19424049364995 4.78926185665641 3.98825004579755 4.57535312254079 4.2049301035683 4.7942727510592 4.38953050769464 0.223797837517601 0.221436583888561 0.217996348394019 0.222295126552424 0.217996348394019 0.220764736740698 0.219206980360678 0.221858689306494 0.229951008123967 0.225200980835480 0.224785185804741 0.220619582769200 0.221476611743163 0.217996348394019 0.226441064594406 0.217996348394019 0.232404396861609 0.221039937061448 0.226438803544118 3 3|0 +|/ 4178185 4178835 4178556.8 4176518 4179073 + gene protein_coding_gene FALSE TRUE AT3G13050.1 transporter-related similar to carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT3G20660.1); similar to Major facilitator superfamily [Medicago truncatula] (GB:ABE91081.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) -0.070292497894304 -0.740038899329111 0.479449058273552 1 1.04930732415406 10.1355717621498 -0.070292497894304 0.0965984498989863
AT1G17360_at 8.9946364294071 9.23853757948255 9.5292393803741 9.52717363831611 9.66049061905366 9.57120294866242 9.64284178669507 9.65480043282374 9.66719189740595 9.43462535421135 9.23128744035256 9.02799899333485 8.99065582395114 9.370679636842 8.9892751504345 9.2279876723496 8.94907409564656 9.43038081367173 9.25304497153369 0.088691271230591 0.0867253714440254 0.0902751856736976 0.089411199791041 0.0856275636367446 0.0883570711342078 0.0902752500274303 0.0877575972516644 0.0841361167758689 0.0841361167758689 0.0882441800237705 0.0842516991537566 0.0875672277316289 0.0886382817070513 0.0921928380104916 0.0873207471076627 0.0937429738111702 0.0874572129556958 0.0900926043411879 1 1 + 5950644 5951132 5950886.182 5947434 5951210 + gene protein_coding_gene FALSE TRUE AT1G17360.1 COP1-interacting protein-related similar to COP1-interacting protein-related [Arabidopsis thaliana] (TAIR:AT1G72410.1); similar to hypothetical protein MtrDRAFT_AC152057g10v1 [Medicago truncatula] (GB:ABE86138.1); contains InterPro domain t-snare; (InterPro:IPR010989) -0.0550653491140023 -0.739648738259629 0.479673669325469 1 1.04902402476171 18.7792594490384 -0.0550653491140023 0.0449966537932451
AT2G41720_at 7.46950668812129 7.14552617443822 7.36124750859188 6.8711698589843 8.38800335137768 6.91150738482172 7.90439800199612 7.72333715268227 6.54255658835148 7.2522986659292 6.09548217606134 7.60289666865782 7.11155590436588 6.68500704125895 7.03658759631656 7.68571886034594 7.02318486990466 6.85772640897837 7.60657959010667 0.222506786685636 0.222506786685636 0.233966507161546 0.233084657802844 0.231538345560174 0.256285146662442 0.222506786685636 0.222506786685636 0.246085680825491 0.240944671923848 0.239964120337184 0.228119042068217 0.230966259676274 0.242548197729540 0.222506786685636 0.225372325448392 0.238494022156798 0.226027384796166 0.227215667200695 2 2|0 -|/ 17410845 17411741 17411307.1 17410681 17414213 - gene protein_coding_gene FALSE TRUE AT2G41720.1|AT2G41720.2 EMB2654 (EMBRYO DEFECTIVE 2654); binding|EMB2654 (EMBRYO DEFECTIVE 2654) similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:AAM15782.1); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os07g0213300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059180.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os07g0590600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060154.1); similar to Os07g0213300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059180.1); similar to Rf1 protein, mitochondrial precursor (PPR protein) (Fertility restorer) (Restorer for CMS) (GB:Q76C99); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.149625826212584 -0.738405555211924 0.480389809119741 1 1.04812220529513 14.5448777928927 -0.149625826212584 0.276777271750170
AT1G69700_at 4.00114799068185 4.75776228851062 2.93127605817574 3.84336667103019 4.55189022601675 3.96286084100774 5.12337215900727 4.89736783396717 4.55233127303925 5.36021023911186 6.97456053070558 7.15775725618204 5.24741100305389 6.2478582902193 6.93142254820006 5.05680688163304 5.04779634008928 6.11609811627192 4.99201280488686 0.271143674729653 0.270443551149321 0.273654658058071 0.276663080801712 0.274050480403869 0.289398455240256 0.272713074145771 0.274978449168866 0.282961280450864 0.270443551149321 0.270443551149321 0.270443551149321 0.270850400357998 0.280235186512795 0.274621597345466 0.270443551149321 0.287213622682104 0.28335983895592 0.273155389724258 1 0|1 /|+ 26224748 26225125 26224974.333 26223901 26225488 + gene protein_coding_gene FALSE TRUE AT1G69700.1 ATHVA22C (Arabidopsis thaliana HVA22 homologue C) Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. Identical to HVA22-like protein c (AtHVA22c) (HVA22C) [Arabidopsis Thaliana] (GB:Q9S784); similar to ATHVA22A (Arabidopsis thaliana HVA22 homologue A) [Arabidopsis thaliana] (TAIR:AT1G74520.1); similar to HVA22-like protein c , putative [Solanum demissum] (GB:AAU93595.1); contains InterPro domain TB2/DP1 and HVA22 related protein; (InterPro:IPR004345) 0.128357489732137 0.73758265924339 0.480864221304315 1 1.04752599299228 9.79145483011985 0.128357489732137 0.232332447524836
AT4G25550_at 8.49846952095134 8.8347612769142 8.97962355896747 8.79181179636763 9.21834425194405 8.82424611188789 9.21558364844856 9.01669842577708 7.55162223364442 8.19792083997014 8.22491420026148 7.9044262372352 8.26581530200067 8.06550885548352 8.64531981526517 7.74717785345277 7.61479127111546 7.9112717329463 8.14843035377487 0.155492155422581 0.158231658859540 0.155344858522466 0.165787352318091 0.154234026837592 0.172573258357968 0.154234026837592 0.158768116021042 0.17857062886329 0.166970906580410 0.155650988686593 0.156321220474028 0.162834310499609 0.165624755090694 0.157138485191775 0.161135072638142 0.1760679232602 0.162280017987369 0.157331316519941 4 4 + 13048621 13050652 13050070.8 13048386 13051178 + gene protein_coding_gene FALSE TRUE AT4G25550.1 similar to ATCFIM-25/CFIM-25 (ARABIDOPSIS HOMOLOG OF CFIM-25) [Arabidopsis thaliana] (TAIR:AT4G29820.1); similar to OSJNBa0032F06.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03439.1); similar to Os04g0683100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054301.1); similar to H0124B04.17 [Oryza sativa (indica cultivar-group)] (GB:CAJ86300.1); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047); contains domain PRE-MRNA CLEAVAGE FACTOR IM, 25KD SUBUNIT (PTHR13047:SF3); contains domain no description (G3D.3.90.79.10); contains domain Nudix (SSF55811) 0.0717701138879479 0.73737346277054 0.480984874554468 1 1.04737451624096 16.9291394743739 0.0717701138879479 0.101386121327404
ATCG00380_at 11.8591344359022 12.5634834031442 11.9641181502950 11.9418314960201 11.8290953059923 11.4308177324263 12.1680738893706 12.0424434647582 13.3488787523523 13.4803766748192 13.7482604784339 14.0252827691088 13.4272017762274 13.6817958091312 13.6524888108418 13.5850039870236 13.0274507964755 13.1397140675407 13.2041251612147 0.089714183287296 0.0878881803924629 0.0965647423257868 0.0930964229184846 0.0880154723281619 0.100220071434434 0.0888641025590688 0.0896777694085981 0.0940604509358605 0.0870636965350067 0.0870636965350067 0.0870636965350067 0.089696374671454 0.0887951847370021 0.0875648877443852 0.0872726254911042 0.0929425337669721 0.089931832235592 0.0871851741214695 C C - 45317 45712 45457.909 45223 45828 - gene protein_coding_gene FALSE TRUE ATCG00380.1 Chloroplast encoded ribosomal protein S4 Identical to Chloroplast 30S ribosomal protein S4 (rps4) [Arabidopsis Thaliana] (GB:P56799); similar to Chloroplast 30S ribosomal protein S4 [Brassica oleracea] (GB:ABD64913.1); contains InterPro domain Ribosomal protein S4; (InterPro:IPR001912); contains InterPro domain RNA-binding S4; (InterPro:IPR002942); contains InterPro domain Ribosomal protein S4, bacterial and organelle form; (InterPro:IPR005709) -0.0876892556956337 -0.737213321063734 0.481077248879212 1 1.047258584753 25.4150547387269 -0.0876892556956337 0.141758305585848
AT3G19650_at 5.53119174964396 5.55330104062827 5.70629934738788 5.63788772908332 5.91469078810077 5.87455924831622 6.16914921906003 5.37141469030073 5.32512850057504 5.68196175929423 5.08763257189805 5.43468004511352 5.0327581652728 5.3299325085217 5.41571598679945 5.12771985637577 5.22633190676012 5.26368200713388 5.61216230093577 0.230754079988884 0.221047257049868 0.220228662830421 0.219009127822688 0.216200821252444 0.215035950266674 0.221968279631075 0.225814439179759 0.225749541829578 0.216299940355838 0.226800671610125 0.215723421881040 0.225252191309539 0.214621726649545 0.222471459861422 0.222303166464517 0.240053056997358 0.220840021216016 0.21924334252046 3 0|3 /|+ 6824729 6825114 6824902.6 6823515 6825267 + gene protein_coding_gene FALSE TRUE AT3G19650.1 cyclin-related similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G23900.2); similar to PREDICTED: similar to CARS-Cyp [Gallus gallus] (GB:XP_422008.1); similar to Os03g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049304.1) -0.0864245596517373 -0.737000683704454 0.481199921915639 1 1.04710468392845 11.1095904688582 -0.0864245596517373 0.138785081197237
AT3G60880_at 5.16527245239148 5.10621080300873 4.87519532531093 5.22896454190244 5.20280509540405 4.751894392466 5.25622755511077 5.11980930155413 5.01228929404258 5.06772712506556 4.57565871069222 5.17860955597587 5.21485878113864 5.03210643458208 5.32222843398934 5.30501720779865 5.28266609485916 4.88278923915112 5.20845658009173 0.216569418531560 0.213713621077338 0.207621213323105 0.217175125264478 0.21039366140547 0.220603162693657 0.214696180757326 0.222395266953601 0.228596110550992 0.208032940631667 0.210263816742157 0.206467298823304 0.209496701134614 0.206027325813847 0.207332841175982 0.206186283376102 0.226574502949591 0.210119693688149 0.209848288179013 3 3 + 22506954 22507488 22507182.091 22505827 22507672 + gene protein_coding_gene FALSE TRUE AT3G60880.1|AT3G60880.2 dihydrodipicolinate synthase 1 (DHDPS1) (DHDPS) (DHPS1) Identical to Dihydrodipicolinate synthase 1, chloroplast precursor (EC 4.2.1.52) (DHDPS 1) (DHDPS1) [Arabidopsis Thaliana] (GB:Q9LZX6;GB:O49355;GB:Q8VZQ1;GB:Q9SW58); similar to DHDPS2 (DIHYDRODIPICOLINATE SYNTHASE), dihydrodipicolinate synthase [Arabidopsis thaliana] (TAIR:AT2G45440.1); similar to dihydrodipicolinate synthase [Populus trichocarpa x Populus deltoides] (GB:CAA51273.2); contains InterPro domain Dihydrodipicolinate synthase subfamily; (InterPro:IPR005263); contains InterPro domain Dihydrodipicolinate synthetase; (InterPro:IPR002220) -0.0720405241859989 -0.73609736132754 0.481721284654784 1 1.04645131599005 10.1859971702302 -0.0720405241859989 0.102464048548694
AT1G36310_at 7.72248369070978 7.44979017202451 7.62143484053752 7.63640168695838 7.79669253304207 7.54054984012175 7.67389157274357 7.86687589555383 6.74366410961527 6.93250332052924 6.83283987557224 7.03886290584428 6.70201857010011 6.67841282029383 7.0207361806621 6.88203472649213 6.88429019174186 6.22734361696773 6.95764894952612 0.217596638042135 0.221586863935264 0.215866002397525 0.213896460065076 0.212037594822099 0.215337953965762 0.214752280800454 0.214128720229775 0.218034675672847 0.211674007470284 0.214206737677651 0.209403844400934 0.211342487481354 0.212551850380915 0.220199620034904 0.217094780160112 0.217170556278943 0.215066732497354 0.212045949824436 1 1 + 13671479 13671934 13671691.455 13670653 13672368 + gene protein_coding_gene FALSE TRUE AT1G36310.1|AT1G36310.2 similar to PREDICTED: similar to CG17807-PA [Rattus norve (GB:XP_001055538.1); similar to Os02g0750500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048132.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.0620560199286273 -0.736007139024845 0.481773377505095 1 1.04638609703675 14.4941431060528 -0.0620560199286273 0.072896448039737
AT1G73730_at 5.10067760352986 5.56883965121594 5.0402805035588 5.39320001879105 5.46282763094402 5.43510993429316 5.47884709261639 5.86258576527831 4.75795090911544 5.20497134480991 5.1938017482087 5.74644301820409 5.36143839802337 5.41299921636874 5.00883467483241 5.31030456669827 5.23699613461802 4.72697598221248 4.80157408076999 0.223367195989734 0.222898289418502 0.225259941219537 0.217943656595361 0.220924056380530 0.241870541466886 0.227058755509290 0.222489109646836 0.240498589109944 0.217943656595361 0.219477591932604 0.217943656595361 0.220150833681961 0.221493175584299 0.217943656595361 0.217943656595361 0.224603389277669 0.225352544658843 0.228466609249401 1 1 - 27734132 27734579 27734337.273 27733692 27736175 - gene protein_coding_gene FALSE TRUE AT1G73730.1 EIL3 (ETHYLENE-INSENSITIVE3-LIKE3); transcription factor Encodes a putative transcription factor involved in ethylene signalling. Isolated DNA binding domain has been shown to bind DNA in vitro. Identical to ETHYLENE-INSENSITIVE3-like 3 protein (EIL3) [Arabidopsis Thaliana] (GB:O23116); similar to EIN3 (ETHYLENE-INSENSITIVE3), transcription factor [Arabidopsis thaliana] (TAIR:AT3G20770.1); similar to EIL1 [Prunus persica] (GB:ABK35085.1); contains InterPro domain Ethylene insensitive 3; (InterPro:IPR006957) 0.0791712164503076 0.735348712060514 0.482153652335726 1 1.04591035106344 10.5034075228422 0.0791712164503076 0.121354578583573
AT1G07890_at 11.7984450924055 11.7999862242297 12.2263834380497 12.1557710960595 10.9324265132331 11.0715955479601 11.7580355745013 11.8786486077057 10.6968657346494 11.0844146929196 11.2532441119216 11.1481686086864 10.7265683999947 10.7110153844320 10.9592195914447 10.5222795343624 10.5269823952184 11.4545188969262 10.6360011714340 0.108261060293007 0.103389715423506 0.108245082132670 0.110795015846574 0.103389715423506 0.107475130328399 0.103389715423506 0.103389715423506 0.113411312030313 0.103652645174803 0.103983874185166 0.104093496788356 0.112483881000908 0.106312925406458 0.105427266545782 0.104182528665226 0.116436183366103 0.106705334641049 0.109125917492044 1 1|0 +|/ 2438303 2439303 2438889.1 2437327 2439662 + gene protein_coding_gene FALSE TRUE AT1G07890.1|AT1G07890.2|AT1G07890.3|AT1G07890.4|AT1G07890.5|AT1G07890.6|AT1G07890.7 APX1 (ASCORBATE PEROXIDASE 1, MATERNAL EFFECT EMBRYO ARREST 6); L-ascorbate peroxidase|APX1 (ASCORBATE PEROXIDASE 1, MATERNAL EFFECT EMBRYO ARREST 6) Encodes a cytosolic ascorbate peroxidase APX1. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. At least part of the induction of heat shock proteins during light stress in Arabidopsis is mediated by H2O2 that is scavenged by APX1. Identical to L-ascorbate peroxidase 1, cytosolic (EC 1.11.1.11) (AP) (AtAPx01) (APX1) [Arabidopsis Thaliana] (GB:Q05431;GB:Q0WLU2); similar to APX2 (ASCORBATE PEROXIDASE 2), L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT3G09640.2); similar to ascorbate peroxidase [Brassica juncea] (GB:AAN60795.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.052622821756295 -0.734485226276084 0.482652652455402 1 1.04528700217277 22.5619165859552 -0.052622821756295 0.034133470493445
AT1G06130_at 6.59653471416441 6.49340977006557 6.13780050429179 6.62472780812571 6.52876948815471 6.38382247847969 6.57203902154748 6.3593986767669 6.46963263835341 6.178195676233 6.23975829317843 6.40332843460853 6.49118140220629 6.507269998685 6.23232836472904 6.8688657507657 6.76612440565557 6.6708584210525 6.24056460676829 0.176535993912627 0.181637812491331 0.182825138937606 0.183290080853109 0.168055115090108 0.180540253846836 0.171796561247687 0.166395855568607 0.180610263295983 0.175009105018850 0.174547498249342 0.170110014028761 0.166395855568607 0.171245619305525 0.175034580947049 0.16871674278546 0.166395855568607 0.172844514269171 0.175692885373249 1 0|1 /|- 1858097 1859415 1858644.1 1857766 1860729 - gene protein_coding_gene FALSE TRUE AT1G06130.1|AT1G06130.2 GLX2-4 (GLYOXALASE 2-4); hydroxyacylglutathione hydrolase similar to GLX2-5 (GLYOXALASE 2-5), hydroxyacylglutathione hydrolase/ iron ion binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G31350.1); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279)|similar to GLX2-5 (GLYOXALASE 2-5), hydroxyacylglutathione hydrolase [Arabidopsis thaliana] (TAIR:AT2G31350.2); similar to Os09g0516600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063673.1); similar to glyoxalase II [Pennisetum glaucum] (GB:AAM34273.1); contains InterPro domain Beta-lactamase-like; (InterPro:IPR001279) 0.0698839671010585 0.73436032405217 0.482724859809419 1 1.04519688830322 12.8713604865220 0.0698839671010585 0.096965989652135
AT3G17800_at 10.6850155964468 10.6516976421808 11.2858730206832 11.1387272565876 11.0283055002039 10.9080979081390 11.6516006125891 11.4441262568651 10.8889784992457 11.1836165540926 11.0659809915625 10.7916676176346 11.1837609357862 11.1991088060162 10.7610158681938 11.5932266919475 11.4505467722682 11.2034074207986 11.0087857540303 0.064379715280161 0.0617788948339084 0.0651673275184394 0.0654165804021548 0.0630264411539881 0.0668781720641515 0.0668756146404594 0.0661308817147833 0.0760048467812666 0.0637408847434838 0.0635235775817116 0.0628806235120385 0.0655712357939698 0.0641784701074826 0.0653680807691269 0.0616364671037949 0.0701558555572708 0.0653330608547105 0.065616115465699 3 3 - 6091294 6091827 6091560.909 6091116 6093157 - gene protein_coding_gene FALSE TRUE AT3G17800.1|AT3G17800.2 mRNA level of the MEB5.2 gene (At3g17800) remains unchanged after cutting the inflorescence stem similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G48450.1); similar to unknown [Brassica napus] (GB:AAK30572.1); contains InterPro domain Protein of unknown function DUF760; (InterPro:IPR008479) 0.0555516733096597 0.734325074674674 0.48274523912371 1 1.04517145916425 22.1907886361197 0.0555516733096597 0.0490259419946621
AT4G17360_at 5.28722107141475 5.42407341239273 4.87966314464212 5.11487325443934 6.08154311632343 4.72711486613103 7.55289507615598 6.90238999955657 4.32866144499549 5.87463154045006 6.19040347430077 6.06432396436681 5.96176934102048 6.9338656378173 6.19840792858263 6.73134761331622 5.30423220168526 5.54554552157843 5.72882405253531 0.225020637289492 0.226970310328545 0.217808249669174 0.223799517841090 0.218055925304441 0.230773816562691 0.218477482408301 0.227941964508948 0.235200135215347 0.216895639065996 0.214130316839991 0.221271623156991 0.216273836253458 0.22044312803095 0.217314944307039 0.214130316839991 0.239331126244803 0.223645053050658 0.214434623129391 4 4|0 -|/ 9703732 9704807 9704299.778 9703559 9705480 - gene protein_coding_gene FALSE TRUE AT4G17360.1 formyltetrahydrofolate deformylase, putative similar to formyltetrahydrofolate deformylase, putative [Arabidopsis thaliana] (TAIR:AT5G47435.1); similar to formyltetrahydrofolate deformylase, putative [Brassica oleracea] (GB:ABD64983.1); contains InterPro domain Formyltetrahydrofolate deformylase; (InterPro:IPR004810); contains InterPro domain Formyl transferase, N-terminal; (InterPro:IPR002376) -0.142657506744746 -0.73342912805154 0.483263413993409 1 1.04452547438379 11.4596930624622 -0.142657506744746 0.264251983957106
AT3G60860_at 8.6776121809606 8.9147607091774 8.61369346875746 8.70476506910653 8.23924763573122 8.31203202185833 7.69547835262652 7.98565890958185 8.34157040231949 8.42237528016832 8.74419846993448 8.81167717756766 8.20430772184684 8.36163161845728 8.45521613389493 8.48002622323274 8.28419259425664 8.10177831337324 8.61245124753204 0.126423596703280 0.126141804155422 0.125424513697395 0.124135067266108 0.122797269138042 0.126628347427773 0.126988579901625 0.125490943126810 0.140359352695195 0.129666165168925 0.129166218714829 0.131072609402905 0.126381879936196 0.129843681964183 0.131479417877336 0.122797269138042 0.138501392276497 0.143336630992403 0.130067407664454 3 3 + 22501912 22502440 22502212.909 22495779 22502697 + gene protein_coding_gene FALSE TRUE AT3G60860.1 guanine nucleotide exchange family protein similar to EDA10 (embryo sac development arrest 10), guanyl-nucleotide exchange factor [Arabidopsis thaliana] (TAIR:AT1G01960.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G35380.1); similar to guanine nucleotide exchange family protein [Arabidopsis thaliana] (TAIR:AT4G38200.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD35378.1); similar to putative guanine nucleotide-exchange protein GEP2 [Oryza sativa (japonica cultivar-group)] (GB:BAD15400.1); similar to guanine nucleotide-exchange protein GEP2 [Oryza sativa] (GB:AAM00191.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain SEC7-like; (InterPro:IPR000904) 0.0603182828369901 0.732806356078991 0.483623808093346 1 1.04407685576053 16.8374947975969 0.0603182828369901 0.067919443480363
AT2G26670_at 9.78282770864156 9.94242191366393 9.87945513922991 9.89810731210778 10.3246114318629 9.71778241920102 10.0876887548375 10.0500335658104 10.1178712184379 9.94308749067214 10.2095396115168 10.1161496309000 10.0996256048804 10.1143709588945 9.90403576747432 10.2817518363633 9.86517525734602 10.0028018494622 9.68674155239627 0.108848278665012 0.107014378510141 0.115765129889159 0.115720944716562 0.108654486043774 0.110575208108131 0.108214173449686 0.112419361604427 0.112594634709297 0.109838334445724 0.109541554220830 0.109975337156416 0.109113472235990 0.109107586961729 0.114478400202157 0.109229729414492 0.122545646980899 0.110720901646477 0.113440209122640 2 2|0 +|/ 11349193 11350448 11349869.111 11348762 11350650 + gene protein_coding_gene FALSE TRUE AT2G26670.1 HY1 (HEME OXYGENASE 1) Encodes a plastid heme oxygenase necessary for phytochrome chromophore biosynthesis and for coupling the expression of some nuclear genes to the functional state of the chloroplast. similar to HO3 (HEME OXYGENASE 3), heme oxygenase (decyclizing) [Arabidopsis thaliana] (TAIR:AT1G69720.1); similar to heme oxygenase 1 [Lycopersicon esculentum] (GB:AAK63012.1); contains InterPro domain Haem oxygenase; (InterPro:IPR002051) 0.0737636586489852 0.729702409651672 0.485422621250839 1 1.04184586155918 19.9554067315561 0.0737636586489852 0.108828900299760
AT2G40650_at 6.6082061098521 6.59948165054387 6.49510118869432 6.27047454932506 6.03174172551121 5.67207418611811 5.4027083602213 5.46767222654316 7.0378133798626 6.73012704963263 7.15504034435587 7.11001840799554 6.4022918416898 7.07281777220174 6.86207667538439 7.17884412465857 6.68110692138118 6.7064534238938 6.84249384280285 0.185249003268789 0.182349816018758 0.183248885921628 0.190173653921098 0.186065383480916 0.188258873959986 0.190977935007993 0.192035592390238 0.196028571244264 0.186216976162845 0.183139184539041 0.185177662003721 0.183963279856217 0.183463475184253 0.183519950543482 0.183726805203255 0.187968461831461 0.196127499949064 0.182152536657736 2 2|0 -|/ 16970668 16971893 16971161.3 16970397 16972830 - gene protein_coding_gene FALSE TRUE AT2G40650.1 pre-mRNA splicing factor PRP38 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G53440.1); similar to ATSRL1, binding [Arabidopsis thaliana] (TAIR:AT5G37370.1); similar to Os09g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062557.1); similar to pre-mRNA processing factor [Triticum aestivum] (GB:AAY84870.1); contains InterPro domain PRP38; (InterPro:IPR005037) 0.0618836285672417 0.72909577210305 0.485774684244959 1 1.04141079993880 12.9515454727900 0.0618836285672417 0.0742552307788342
AT3G49680_at 10.5451367601519 10.4494319232024 10.2244656237825 10.1529586886724 10.5484492587799 10.008367339286 11.1614926887297 11.1050485559473 9.71830165727958 10.8697081526217 11.0093845045296 10.8995304616497 10.7161291762474 10.9681569690086 10.7871663161437 10.6314321103811 10.5012077475668 10.7716961096784 10.4380709493848 0.0824336172085925 0.080127171518952 0.0894084131747414 0.0838328906659906 0.0810578925778184 0.0878259322663065 0.0825452608564263 0.0817547209863322 0.0937277320057543 0.080127171518952 0.080127171518952 0.080127171518952 0.0826435282896183 0.080127171518952 0.0814941998384588 0.080127171518952 0.080127171518952 0.0814633434401124 0.0821544570556752 3 3 + 18435323 18436385 18435851.273 18433634 18436677 + gene protein_coding_gene FALSE TRUE AT3G49680.1 ATBCAT-3; branched-chain-amino-acid transaminase/ catalytic Encodes a chloroplast branched-chain amino acid aminotransferase. Complements the yeast leu/iso-leu/val auxotrophy mutant. Identical to Branched-chain-amino-acid aminotransferase 3, chloroplast precursor (EC 2.6.1.42) (Atbcat-3) (BCAT3) [Arabidopsis Thaliana] (GB:Q9M401;GB:Q8LAT6;GB:Q9M2Z0); similar to ATBCAT-5, branched-chain-amino-acid transaminase/ catalytic [Arabidopsis thaliana] (TAIR:AT5G65780.1); similar to branched-chain amino acid aminotransferase [Solanum tuberosum] (GB:AAF07192.1); contains InterPro domain Aminotransferase, class IV; (InterPro:IPR001544); contains InterPro domain Branched-chain amino acid aminotransferase II; (InterPro:IPR005786) -0.069078124869491 -0.728658244253858 0.486028705926013 1 1.04109721465188 21.0882262769003 -0.069078124869491 0.0962201169919164
AT1G56560_at 7.08084195657065 7.5159201278823 7.88173377885217 7.90468756489372 7.52741930625533 7.57779016347271 8.04075370218955 8.1783614196411 6.43473438683057 7.14143935258249 6.20406977627561 6.35134826544167 7.07117356710905 6.96092060056675 6.69639685201208 7.17164073088422 7.7989778798535 6.70663235164606 6.71082503648157 0.201036871148019 0.197389252110063 0.205691399013670 0.203685010295919 0.200313254103830 0.204963526120864 0.198018256115128 0.197389252110063 0.209195860209324 0.20395799434921 0.203279160552641 0.203531917918457 0.200915305574848 0.213924787503351 0.209581288910072 0.200792919436862 0.204276161475093 0.203818262287841 0.210573951574639 1 1|0 +|/ 21197769 21198575 21198229.1 21196164 21198777 + gene protein_coding_gene FALSE TRUE AT1G56560.1 beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT5G22510.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G05820.1); similar to beta-fructofuranosidase, putative / invertase, putative / saccharase, putative / beta-fructosidase, putative [Arabidopsis thaliana] (TAIR:AT3G06500.1); similar to invertase [Oryza sativa (indica cultivar-group)] (GB:AAO25633.1); similar to neutral invertase [Beta vulgaris] (GB:CAD19320.1); similar to neutral invertase [Daucus carota] (GB:CAA76145.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Plant neutral invertase; (InterPro:IPR006937) 0.063375239736499 0.727357708742751 0.486784279336523 1 1.04016606458104 14.5296774666056 0.063375239736499 0.0795473765403956
AT3G12020_at 6.24520259713132 6.3687839878123 5.7222927455583 5.22225082978407 5.85682532794723 5.97688624738051 6.00761705703789 5.66738398580087 6.42637533021294 5.97660438669953 6.60696913347103 6.88003487573581 6.16550831368948 6.33764407263559 6.810069543321 6.31935994684699 5.83778218607895 5.99087673312585 6.01059888162725 0.204938050061335 0.204709015836149 0.222453851663173 0.211368853242567 0.205635829727421 0.221765533672261 0.198440177606776 0.204179732037831 0.228731515092629 0.212307639250936 0.198440177606776 0.206397993178310 0.198440177606776 0.200869798414165 0.206527861566719 0.200361674974132 0.204350989759661 0.20402421291973 0.201294204281294 3 3 + 3833592 3834114 3833831.667 3827022 3834152 + gene protein_coding_gene FALSE TRUE AT3G12020.1 kinesin motor protein-related similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT2G21380.1); similar to kinesin-related protein (MKRP1) [Arabidopsis thaliana] (TAIR:AT1G21730.1); similar to kinesin motor protein-related [Arabidopsis thaliana] (TAIR:AT5G06670.1); similar to Kinesin, motor re (GB:ABE89527.1); similar to Kinesin heavy chain, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54589.2); similar to kinesin motor protein 1-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17149.1); contains InterPro domain Kinesin, motor region; (InterPro:IPR001752); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) -0.0735060257557774 -0.727148785309634 0.486905727984161 1 1.04001661623836 12.1366004140364 -0.0735060257557774 0.108830257921932
AT2G29560_at 6.23585502922344 6.66903396229395 6.43874366604918 6.35947202726371 6.75503845923857 6.39940912591545 6.90511103424988 6.36081605679188 6.54033573440661 6.42109811302244 6.86252034228303 6.75846951303531 6.46144816121429 6.45279904154474 6.71992817400168 6.52878699861592 6.44541145731241 6.70004870616823 6.2195039500966 0.151433029434516 0.152185071174728 0.152575400652760 0.152922653998155 0.153558361193873 0.148286415209482 0.15634636739566 0.162544615639694 0.156433279296773 0.157176275037347 0.154231144569326 0.145880727473571 0.155284787899080 0.147034430626785 0.152418814110340 0.153342983223642 0.160387071496520 0.151979986851280 0.153906292731258 2 2|0 +|/ 12655236 12656296 12655951 12653637 12656983 + gene protein_coding_gene FALSE TRUE AT2G29560.1 enolase, putative similar to LOS2 (Low expression of osmotically responsive genes 1), phosphopyruvate hydratase [Arabidopsis thaliana] (TAIR:AT2G36530.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06877.1); contains InterPro domain Enolase; (InterPro:IPR000941) 0.0839962078701726 0.72634478463242 0.48737328038474 1 1.03944184373625 13.0203461610185 0.0839962078701726 0.135895545237796
AT3G23300_at 6.69443866288113 7.3105020441493 6.64503769813963 6.40300916439634 6.86948588610226 6.66149921111575 7.04365139311501 7.40651876652657 7.07123305625727 6.21571107048441 7.32256425646048 7.66845069314467 6.8344451480513 6.55132499702421 7.09168357846559 6.53402608755752 6.0066353276432 7.20260779921268 6.51327168729134 0.199235247067005 0.184796447552196 0.188660714784746 0.183841211862964 0.189587840805703 0.186692830462535 0.188790710298748 0.193851913652014 0.187835036902697 0.189954912786006 0.184569763280818 0.185229699133001 0.188775681136517 0.198019403934641 0.191403970593838 0.191789283866624 0.190963071901724 0.195490412587139 0.192606369006022 3 3|0 +|/ 8335138 8335817 8335579.7 8333155 8336153 + gene protein_coding_gene FALSE TRUE AT3G23300.1 dehydration-responsive protein-related similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT1G04430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT5G14430.1); similar to dehydration-responsive protein-related [Arabidopsis thaliana] (TAIR:AT4G14360.2); similar to dehydration-responsive protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47791.2); similar to dehydration-responsive protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD46056.1); similar to Protein of unknown function DUF248, methyltransferase putative [Medicago truncatula] (GB:ABE90857.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.0838122143977782 -0.726154524827877 0.487483964698045 1 1.03930591011373 13.6300374402812 -0.0838122143977782 0.135496728111025
AT3G21200_at 9.45255550941834 9.40043624346215 9.24154901410666 9.32740338023052 9.69284401498473 9.27436537685312 9.48576065615878 9.52790140879933 9.4731093976861 9.62420557335057 9.71717909039422 9.89499918269464 9.6577954866466 9.78921420363067 10.2391476657649 9.9421765353682 9.41492051234938 9.46316957452176 9.57879477973003 0.0963270068067572 0.0959300560469784 0.102775296541721 0.103232058350477 0.0976749582197519 0.098285414205025 0.0996199661594015 0.0989881857347637 0.106935859829191 0.0969556796126126 0.0947135997584401 0.0942191080193488 0.0942191080193488 0.095335168585529 0.0942191080193488 0.0952519065797138 0.108783782269265 0.0970875868707991 0.100330536761670 3 3 + 7436576 7437813 7437371.273 7436032 7438017 + gene protein_coding_gene FALSE TRUE AT3G21200.1 similar to hypothetical protein MtrDRAFT_AC151668g4v1 [Medicago truncatula] (GB:ABE87200.1); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002) 0.0617495116249169 0.725455243420966 0.487890912471624 1 1.03880656678383 19.0871162163401 0.0617495116249169 0.074832407234213
AT3G27360_at 4.35695300841827 4.74629494189175 3.92498894593066 3.86184575409844 3.5761331010539 3.60455505964952 5.29187717008688 5.06712602466757 4.84708886167442 5.44268198942304 6.11102307224447 7.24295817078369 4.79717323504882 5.78402945087388 7.22905743222961 6.04645995250264 4.81785496976569 6.04343532921972 4.74383518708627 0.260202482423537 0.254992564829146 0.273195683227607 0.266145421690423 0.262738850592602 0.270065547716 0.254992564829146 0.257191576819117 0.265828265590164 0.259157658869088 0.254992564829146 0.258428207637927 0.254992564829146 0.262721640624746 0.26023838699613 0.254992564829146 0.264326234502179 0.263303795334926 0.25597371709386 3 3 - 10130714 10131065 10130918.364 10130520 10131174 - gene protein_coding_gene FALSE TRUE AT3G27360.1 histone H3 Identical to Histone H3.2 (Histone H3.1) (HTR1) [Arabidopsis Thaliana] (GB:P59226); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10390.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G65360.1); similar to histone H3 [Arabidopsis thaliana] (TAIR:AT5G10400.1); similar to Histone H3.2 (GB:P68427); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone H3; (InterPro:IPR000164); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0629425661136653 -0.725394761269177 0.487926120361348 1 1.03876339741182 9.81382223288036 -0.0629425661136653 0.0787151629746015
AT2G33340_at 10.1220634841392 10.2907415720618 10.1896054485147 10.1100014447443 10.5028598289175 10.4823576991230 9.74428141818679 9.79977404466858 9.92025424545117 9.81550134013631 9.92299587710704 9.6464540180818 9.90040641140927 9.40800812196024 9.39502118482995 9.7756754167334 9.81481951963245 9.62649887019239 10.0073611901074 0.109519420090696 0.105433046001182 0.112216434593048 0.106152734565765 0.103885059825799 0.105956174070276 0.104499246382268 0.108096464535575 0.117171500309864 0.106369427065178 0.100481703245411 0.100481703245411 0.106108404831763 0.113794407245650 0.113102175263839 0.104756658627784 0.105043337821599 0.109932262384992 0.10297209360792 2 2|0 -|/ 14133590 14134597 14133837.444 14133294 14138220 - gene protein_coding_gene FALSE TRUE AT2G33340.1|AT2G33340.2|AT2G33340.3 transducin family protein / WD-40 repeat family protein|nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G04510.1); similar to Os10g0466300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064804.1); similar to hypothetical protein MtrDRAFT_AC146759g5v1 [Medicago truncatula] (GB:ABE87995.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain U box; (InterPro:IPR003613)|similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G04510.2); similar to Os10g0466300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064804.1); similar to hypothetical protein MtrDRAFT_AC146759g5v1 [Medicago truncatula] (GB:ABE87995.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain U box; (InterPro:IPR003613) 0.0519268222445779 0.725390945010303 0.487928341937756 1 1.03876067364769 19.9555142105736 0.0519268222445779 0.0338625412335540
AT1G43560_at 9.14688381659169 9.39099776940506 9.1247211581558 9.11269207113974 9.40726567295622 9.06825830987169 9.73775491413215 9.6591570722218 9.49502984107267 9.62716124176426 10.1139611378925 10.1947546667670 9.94323143048364 10.0722588778733 10.2588142789420 10.3061182724680 9.43321757308683 9.55106448850082 9.5458248667230 0.113387611003061 0.111311451464041 0.114016887175161 0.113585223323655 0.115129832417341 0.115280542091768 0.117089609641940 0.116951849666304 0.122875184549679 0.122617784473473 0.115674402230005 0.116897515624426 0.115405172317786 0.110750010047734 0.113682124119403 0.114459005415486 0.118305344519106 0.12193562179724 0.115425835523754 1 1|0 -|/ 16401032 16401355 16401158 16400539 16402318 - gene protein_coding_gene FALSE TRUE AT1G43560.1 ATY2 (Arabidopsis thioredoxin y2); thiol-disulfide exchange intermediate similar to ATY1 (Arabidopsis thioredoxin y1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G76760.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE83162.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) 0.0613540920874918 0.725211259241414 0.488032950575614 1 1.03863244138153 19.1010578016951 0.0613540920874918 0.0735919782963963
AT3G26720_at 6.82648368638106 6.62104636977656 6.62511847793553 6.41750234628198 6.68030616706704 6.63056978475552 6.71298546441374 6.26198231299459 6.76814321752379 7.22864293245177 6.87558974010075 7.13146536168586 6.53842092239962 6.90060523625625 6.94669194591444 6.7957570968554 6.86206308420838 6.58063335371971 6.84416298772472 0.167815008121669 0.159657779188347 0.162024402057605 0.166671598142197 0.159657779188347 0.160035585236124 0.161887850963906 0.170640575631803 0.167343416943223 0.164042441390914 0.160012372899285 0.164910353056637 0.176643995839885 0.178525478542224 0.166099264616757 0.162719473731435 0.162631137750517 0.170878847331833 0.169833096555987 3 3|0 +|/ 9822727 9824195 9823545.444 9817818 9824423 + gene protein_coding_gene FALSE TRUE AT3G26720.1 glycosyl hydrolase family 38 protein similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G66150.1); similar to glycosyl hydrolase family 38 protein [Arabidopsis thaliana] (TAIR:AT5G13980.2); similar to Glycosyl hydrolases family 38 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22500.1); similar to Glycosyl hydrolases family 38 C-terminal domain, putative [Medicago truncatula] (GB:ABE88173.1); similar to glycosyl hydrolase family 38 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65906.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Glycosyl hydrolases 38, C-terminal; (InterPro:IPR011682); contains InterPro domain Glycoside hydrolase, family 38; (InterPro:IPR000602) -0.0676649838195056 -0.724146331518032 0.488653219959011 1 1.03787302884247 13.4849425204721 -0.0676649838195056 0.093383237367534
AT1G27530_at 10.4606273343844 10.7352839337367 10.7589042317454 10.9105711760669 10.8549936120069 10.543259838693 10.8034883971747 10.8467395589224 10.0842769870266 10.5388588339585 10.4097226961053 10.1861565412923 10.4350223011589 10.4017851296257 10.1893592262916 10.5325312391822 10.4080121362823 10.3156843193231 10.2488159728757 0.087961840758347 0.0827905198053182 0.0904567995024234 0.0864366864757407 0.0851357795527254 0.09917581429935 0.0908972086177952 0.0836364547687946 0.0959693800382337 0.0827905198053182 0.087406444242797 0.0840227412771555 0.0830948169356875 0.0869707859348184 0.0853110033786857 0.0842756761761902 0.110085538499259 0.0956099627145162 0.0870366188160713 1 1|0 -|/ 9562777 9563818 9563389.4 9562580 9563950 - gene protein_coding_gene FALSE TRUE AT1G27530.1 similar to Os10g0205200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064309.1); similar to ubiquitin-like (UBL) post-translational modifier [Dictyostelium discoideum AX4] (GB:XP_001134517.1); contains domain UBC-like (SSF54495); contains domain FAMILY NOT NAMED (PTHR12921) 0.0622655046387968 0.724072407309023 0.488696295980692 1 1.03782034884708 21.0644509086469 0.0622655046387968 0.0769047834721218
AT1G32070_at 10.3782121417637 10.3626604191281 10.5276407224418 10.4949684975495 10.6744633890595 10.3181569041793 10.8126946828237 10.6458859841636 10.5784212348174 10.6358974875754 10.5545531943755 10.4419464569163 10.4492866493828 10.6079839527576 10.3847993444050 10.6643533915924 10.5067430548354 10.5153348247574 10.5524299143226 0.0869187096368169 0.0840266753439697 0.0873375762835512 0.085270746893973 0.0851996387754609 0.0927492879101897 0.0875952872211579 0.0867863888397501 0.0896345149929227 0.085588824888892 0.0871857509348363 0.0840266753439697 0.0840266753439697 0.0844345736351809 0.0854042707990189 0.0840727966163259 0.103546544577809 0.0923744821760527 0.0883867161678836 1 1|0 -|/ 11534865 11535794 11535486.4 11534662 11536318 - gene protein_coding_gene FALSE TRUE AT1G32070.1|AT1G32070.2|AT1G32070.3 ATNSI (NUCLEAR SHUTTLE INTERACTING); N-acetyltransferase|ATNSI (NUCLEAR SHUTTLE INTERACTING) Encodes a nuclear acetyltransferase (NSI)that interacts with the geminivirus movement protein NSP. This interaction is required for viral infection and systemic spread. Acetylates the viral coat protein (CP) in vitro, but not NSP. NSP inhibits NSI activity in vitro. NSI is highly transcribed in phloem and in xylem parenchyma cells, and in the apical meristem and guard cells, within young tissues in Arabidopsis, and its expression is turned off as tissues mature. similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT1G26220.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAW56866.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.059673516136439 -0.723411588666126 0.489081466328162 1 1.03734964416422 21.0791060030718 -0.059673516136439 0.0683705629641933
AT3G61220_at 9.2908466222712 9.39157819769839 10.0191911008559 10.1749861115235 9.8204777964146 9.45828570193886 10.474979069113 10.4557897239245 9.25216229326192 10.1230282931679 9.83720324805103 9.65681148394781 10.1560380226583 9.94016091673915 9.36145662614371 10.1260368177737 10.1633915612198 10.0703201297735 9.89967519406567 0.109627168955102 0.0998403817935953 0.107751693985812 0.102890116781842 0.101820995695920 0.107786238613068 0.109417990710914 0.103156297698912 0.112911628103209 0.106195701701222 0.100882658189953 0.102641666358776 0.100227002776204 0.111145937569299 0.108726893110530 0.100832002507637 0.110546726513932 0.106406694904556 0.102477853339784 3 3 + 22674742 22675246 22675028 22673935 22675468 + gene protein_coding_gene FALSE TRUE AT3G61220.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT2G24190.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABD28440.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.0602877658606593 0.723404940885686 0.489085342095535 1 1.03734491082482 19.7218747626109 0.0602877658606593 0.0705015185069186
ATMG00070_at 4.34903273971243 5.30651282570775 4.79381370984148 5.46979218696492 5.24601507043772 4.55252957652538 4.9442384748881 5.91444289004323 3.96723496439998 5.41625253169227 4.30701878528472 4.92088044636608 5.08344067786455 4.6208721919193 4.11046186531031 4.91880067499279 4.95748386318133 4.37796118105074 5.17868131856413 0.261091941891457 0.248458644082237 0.259878554582878 0.252651205298668 0.252978612654816 0.256687464907937 0.263724001975318 0.250474326273841 0.265796431799848 0.253084493882591 0.245568800258395 0.258910604459898 0.250922210871278 0.249915857575066 0.249992966524331 0.251962652906012 0.262394954627231 0.255495023607920 0.252813503900958 M M - 23702 24107 23893 23663 24235 - gene protein_coding_gene FALSE TRUE ATMG00070.1 NADH dehydrogenase subunit 9 similar to NADH dehydrogenase subunit 9 [Brassica oleracea var. botrytis] (GB:ABB54699.1); contains InterPro domain NADH dehydrogenase (ubiquinone), 30 kDa subunit; (InterPro:IPR001268); contains InterPro domain Bacterial enterotoxin; (InterPro:IPR008992) -0.152480203725701 -0.723196218733199 0.489207040593022 1 1.03719631625082 9.8301328004143 -0.152480203725701 0.28936549737704
AT4G18060_at 6.61490959147554 7.0742949484821 6.52916437862943 6.4534509407317 7.3077168426402 6.56026058345837 7.25167473784261 6.88883548471965 6.7811123061834 6.71256415947913 7.44673496878018 7.56011868355442 7.08870463463524 7.17334691499492 7.47240723396019 7.45710746108398 6.53327660458396 7.19667341410703 6.92138613742421 0.203150537194966 0.189455204479277 0.195674848104050 0.196831374956517 0.194914559353245 0.205041419697751 0.204899960775710 0.197781411331886 0.200573930433754 0.204613782807505 0.190813064762321 0.192779065355059 0.200944067169533 0.196122043098139 0.198469479930385 0.189455204479277 0.211388842417929 0.194549751766473 0.189455204479277 4 0|4 /|- 10027687 10028700 10028207.889 10027492 10029911 - gene protein_coding_gene FALSE TRUE AT4G18060.1 SH3 domain-containing protein 3 (SH3P3) similar to SH3 domain-containing protein 2 (SH3P2) [Arabidopsis thaliana] (TAIR:AT4G34660.1); similar to SH3; tRNA-binding arm [Medicago truncatula] (GB:ABE92790.1); contains InterPro domain Src homology-3; (InterPro:IPR001452); contains InterPro domain Neutrophil cytosol factor 2; (InterPro:IPR000108) 0.0956224337509335 0.722514682275142 0.489604555135099 1 1.03671137454852 13.8580719920765 0.0956224337509335 0.164821336824891
AT3G01370_at 8.62777922628773 8.3198524360823 8.3968692320391 8.05514713915619 8.59015712199254 8.4384257874308 8.59471053218257 8.0284789859388 8.58007921700417 9.00307284940876 8.55325305061565 8.9139004792592 8.34127165789003 8.5663296054061 8.97892775377355 8.88083516233626 8.29732266974619 8.60411547508169 8.75900137061214 0.112007321210013 0.108046783753848 0.111257305636008 0.118187454593875 0.107192505485891 0.109308210435920 0.108885235892671 0.113895047471038 0.127980806470988 0.105248902222117 0.107304690991478 0.107570475444046 0.113162722961665 0.107869908791839 0.110083017136407 0.105248902222117 0.111675970534951 0.111201973584035 0.111833476080905 3 3|0 +|/ 142508 143441 143062.4 139018 143713 + gene protein_coding_gene FALSE TRUE AT3G01370.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G23070.1); similar to Protein of unknown function UPF0044 [Medicago truncatula] (GB:ABE83057.1); similar to OSIGBa0130P02.2 [Oryza sativa (indica cultivar-group)] (GB:CAH67138.1); similar to Os04g0464800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053020.1); contains InterPro domain CRS1/YhbY; (InterPro:IPR001890) -0.0806394027731483 -0.721344050091545 0.490287822213289 1 1.03587935496459 17.0927837046914 -0.0806394027731483 0.128949933512547
AT1G22790_at 6.30822378425896 6.45579927576572 6.03194600873229 6.00160454748131 6.4453515305767 6.1297812053435 6.41939342704606 6.3875467815051 5.73197738528666 5.60588254176874 6.47088129252741 6.25597097770774 6.24106008014635 6.03131004648541 5.80892530235293 6.15068529595198 5.90706314324511 6.32086262448047 6.04112395306302 0.227529854633809 0.234188184502263 0.241151556480822 0.234032931229788 0.233361958950543 0.239870883179407 0.231325592604429 0.233775345270729 0.240618389474663 0.228770984253918 0.230712944324709 0.233374662101822 0.229175739813741 0.240109214846022 0.230522994245961 0.227615711644608 0.237188136593345 0.242263458520172 0.233520710608868 1 1 + 8070325 8070785 8070527.545 8069476 8071551 + gene protein_coding_gene FALSE TRUE AT1G22790.1|AT1G22790.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G34010.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81200.1) 0.0573901122727634 0.720946574035495 0.490519956831022 1 1.03559711997314 12.2431255561229 0.0573901122727634 0.0607660867566153
AT1G49430_at 6.10502526256655 6.4554047211522 4.67471006354639 5.48609953944791 8.3546780134744 7.47388655314596 7.42526769599386 7.49247925215855 8.38467723988085 8.16646101230802 9.30343572757542 9.2066068540015 7.91507827383666 8.86364489041627 9.02297914077303 7.02155835478557 6.53222310347288 7.82468829171458 7.67480452823776 0.254871850496791 0.250242726962381 0.257600047351529 0.262204510781984 0.2442814244881 0.252308882234386 0.240802751967891 0.239739856933983 0.253718484274382 0.245502126894671 0.249807704113044 0.247178067942884 0.246613728813394 0.246726367131279 0.239739856933983 0.239739856933983 0.255243597709554 0.239739856933983 0.243270273580846 1 1|0 +|/ 18298457 18298955 18298701.875 18294711 18299493 + gene protein_coding_gene FALSE TRUE AT1G49430.1 LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) Encodes a long chain acyl-CoA synthetase that catalyzes the synthesis of omega-hydroxy fatty acyl-CoA intermediates in the pathway to cutin synthesis. similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase [Arabidopsis thaliana] (TAIR:AT4G23850.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to AMP-binding enzyme family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG22526.1); similar to acyl CoA synthetase [Brassica napus] (GB:CAA96523.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) -0.118119060567169 -0.720886210508796 0.490555216569563 1 1.03555426968595 14.8267394325428 -0.118119060567169 0.216244224509997
AT4G11160_at 7.335782738394 7.28836047037602 7.42570519078417 7.55030546741663 7.72393097329258 7.62346417173413 7.44405746039631 7.34629608638561 6.79230346241718 6.72442638947916 6.41860370447674 6.29414210452014 6.58058395960006 6.83851088038851 6.63471462679452 6.89986546812613 6.63691169375865 6.7669851834798 6.75762786387489 0.205055268501094 0.198210758755811 0.211747046246321 0.210091628254644 0.209732407755196 0.214171987590805 0.205922628148263 0.199579695219948 0.209745204007378 0.205200717287047 0.196621404215299 0.206576114586076 0.211011491406224 0.212202505893148 0.198204227203924 0.197145984692494 0.204937966551401 0.206889732923354 0.200194010854906 4 4|0 +|/ 6806046 6806535 6806263.6 6803590 6806871 + gene protein_coding_gene FALSE TRUE AT4G11160.1 translation initiation factor IF-2, mitochondrial, putative similar to translation initiation factor IF-2, chloroplast, putative [Arabidopsis thaliana] (TAIR:AT1G17220.1); similar to Os09g0515500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063668.1); similar to translation initiation factor IF-2 [Gluconobacter oxydans 621H] (GB:YP_191979.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain Initiation factor 2; (InterPro:IPR000178); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) 0.0514488629857766 0.719579705569618 0.491318772635677 1 1.03462759058718 14.1631922904642 0.0514488629857766 0.0334783471846932
AT3G63520_at 11.2902458266224 11.1656963844579 11.4142744552959 11.3662513741237 11.6375762282108 11.1888284425396 11.8219696877959 11.5232580724603 11.4383237698485 11.6674670675561 11.6185086374716 11.2755476246680 11.3855433848640 11.5313604881819 11.3081914395116 11.7139216174372 11.6353874071646 11.3922150589629 11.6052267170191 0.0887250333687924 0.086517211052226 0.0884259331345772 0.0872444369824981 0.0855623553816467 0.0945905025559418 0.0870958890223483 0.0880674933158727 0.0973111154669334 0.086376476672375 0.088313368206595 0.0855623553816467 0.0875757778224152 0.08655924391757 0.0898624859504153 0.0871557177498764 0.0937847155298224 0.0964305286582655 0.0855623553816467 3 3 + 23465938 23466735 23466310.727 23463886 23467053 + gene protein_coding_gene FALSE TRUE AT3G63520.1 CCD1 (CAROTENOID CLEAVAGE DIOXYGENASE 1) Encodes a protein with 9-cis-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including β-carotene, lutein, zeaxanthin, and all-trans-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-cis-double or allenic bonds. similar to NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE3) [Arabidopsis thaliana] (TAIR:AT3G14440.1); similar to carotenoid cleavage dioxygenase 1 [Coffea canephora] (GB:ABA43900.1); similar to 9,10[9',10']carotenoid cleavage dioxygenase [Vitis vinifera] (GB:AAX48772.1); similar to carotenoid cleavage dioxygenase [Cucumis melo] (GB:ABB82946.1); contains InterPro domain Carotenoid oxygenase; (InterPro:IPR004294) -0.0681572976583942 -0.71935905065466 0.491447803945539 1 1.03447122963256 22.9524743799836 -0.0681572976583942 0.0961072103407936
AT4G10920_at 8.98007585502204 9.10718458732956 9.03036286989111 9.16883190033707 9.48576570795226 9.06979128756374 9.05826987305275 8.86904311534205 8.3820280880667 8.63960377350357 8.23877479737292 8.12813461048322 8.21582124807865 8.20105512653607 7.77798582383657 8.67913162623404 8.78014444347225 8.01714371470244 8.68517565345382 0.15546427844025 0.149076042423250 0.15433379146714 0.149679915303607 0.151394365086367 0.152107284550265 0.151462536268986 0.148093753355876 0.16948800586456 0.149612899056485 0.153607518937176 0.153278969471608 0.156697686581085 0.15387015936976 0.158571035366851 0.146381015148018 0.146381015148018 0.157515423708351 0.153696985923169 4 4|0 -|/ 6697918 6698995 6698691.3 6696708 6699195 - gene protein_coding_gene FALSE TRUE AT4G10920.1|AT4G10920.2 KELP; DNA binding / transcription coactivator|KELP Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development. Identical to RNA polymerase II transcriptional coactivator KELP (KELP) [Arabidopsis Thaliana] (GB:O65155); similar to zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana] (TAIR:AT4G00980.1); similar to putative transcriptional coactivator [Brassica rapa] (GB:BAB41214.1); contains InterPro domain ssDNA-binding transcriptional regulator; (InterPro:IPR009044); contains InterPro domain Transcriptional coactivator p15; (InterPro:IPR003173) -0.0645586653761985 -0.719065249902547 0.491619641906929 1 1.03426310114939 17.5080205306518 -0.0645586653761985 0.0855127845040542
AT1G63430_at 6.6876764335967 6.95915768801312 6.31339650259616 6.45766542258991 6.99338639962461 6.44186069096634 6.62141597723542 6.98049321053069 7.20253326029596 6.89128656572813 7.5444466506303 7.09892167629778 6.66296192201644 7.37982447850335 7.28883278082111 7.29515346898746 6.57303952507549 6.89541187171169 6.8756976804572 0.200179677020630 0.187707963497301 0.198434001893368 0.201596033266350 0.187707963497301 0.193012777649216 0.202324486241585 0.194184097280947 0.208911476505985 0.190328833852948 0.191159029774006 0.195358399984620 0.193561399057689 0.187707963497301 0.193884096972362 0.188725511350593 0.200704839006879 0.214747870579407 0.189761068070168 1 1 + 23529242 23530059 23529788.222 23526273 23530435 + gene protein_coding_gene FALSE TRUE AT1G63430.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G41180.1); similar to H0306F12.6 [Oryza sativa (indica cultivar-group)] (GB:CAJ86176.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0790618477356855 -0.71864116924582 0.491867745372439 1 1.03396281377619 13.7229631484354 -0.0790618477356855 0.125704013138183
AT3G15353_at 14.2065414732255 14.1451241923218 14.3688042765221 14.3637436550257 14.3438940744131 14.2919250300251 14.3218806729422 14.395448793598 14.4225310077117 14.5719417739239 14.5980603571791 14.5370123613450 14.6499267533145 14.4319690803145 14.1957510276424 14.4706936774958 14.5176723954143 14.5172261519739 14.4025518272674 0.044804859246936 0.0437475531056733 0.0448415174356734 0.0439635694016067 0.046757012932263 0.0469244408489169 0.0477971603183226 0.0457907850665292 0.0460440529058475 0.043898251625484 0.0450945658593161 0.0436387055265712 0.0440756671200187 0.04578845593241 0.0486232304729493 0.0440462548672618 0.0465215637640342 0.0454989440473836 0.0442940706697764 3 3|0 -|/ 5180843 5181294 5180966.375 5180674 5181407 - gene protein_coding_gene FALSE TRUE AT3G15353.1 MT3 (METALLOTHIONEIN 3) metallothionein, binds to and detoxifies excess copper and other metals, limiting oxidative damage similar to metallothionein-like protein [Thellun (GB:AAM19713.1); contains InterPro domain Plant metallothionein, family 15; (InterPro:IPR000347); contains InterPro domain Whey acidic protein, core region; (InterPro:IPR008197) 0.0494785409626224 0.718050295782774 0.492213561957249 1 1.03354468096397 28.7824021936188 0.0494785409626224 0.0188865538383995
AT1G12050_at 8.79169526204583 9.05786878904175 8.84843479572201 9.1668312552096 9.28073611594452 8.9213152786982 8.82049813050613 9.11838915614345 8.58775965468219 8.69460776934264 8.65173341344314 8.22778851030168 8.79080749481446 8.64473460348377 8.23699166569797 8.86498904996961 8.6525950736574 8.76281918350589 8.41773944669243 0.152054920898057 0.147806798203986 0.154974105132450 0.151563730970587 0.147705880526214 0.148207744546683 0.147592360258513 0.151203913689757 0.162695959663403 0.149641518710593 0.150051039101055 0.148351705802751 0.143638712185034 0.151652432270524 0.150498750871761 0.143638712185034 0.144874414252164 0.149411750559866 0.151494946002932 1 1|0 +|/ 4074739 4075621 4075267.7 4072750 4076205 + gene protein_coding_gene FALSE TRUE AT1G12050.1 fumarylacetoacetase, putative similar to fumarylacetoacetase [Medicago truncatula] (GB:ABD33010.1); similar to Os02g0196800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046195.1); contains InterPro domain Fumarylacetoacetate (FAA) hydrolase; (InterPro:IPR002529); contains InterPro domain Fumarylacetoacetase; (InterPro:IPR005959) 0.072285805539726 0.717757819553985 0.49238479482865 1 1.033337821134 17.5861009302131 0.072285805539726 0.108092975903468
AT1G44750_at 7.4614259139597 7.60334389867002 7.89381928951514 7.78367942344435 8.55587728386482 7.80835808785537 8.02205263544032 7.95460588205959 6.82845407790624 6.96854058177293 6.64860563903527 6.9466497865934 7.06527346887237 7.07609501497206 6.20508623964616 6.74307138160278 7.1143515228551 6.8547535782861 6.95696295061772 0.218777780369159 0.223851541587265 0.224447315162475 0.217457068544657 0.215548365629975 0.221967506183512 0.214573191494713 0.222398963101509 0.220539252799179 0.213848268443158 0.221096508112336 0.221824310285499 0.214933941438266 0.221157848169159 0.21506905522456 0.211590249468739 0.227389465637911 0.217837795607332 0.219404689737018 1 1 + 16897032 16897564 16897337.636 16895079 16897905 + gene protein_coding_gene FALSE TRUE AT1G44750.1|AT1G44750.2|AT1G44750.3 ATPUP11 (Arabidopsis thaliana purine permease 11); purine transporter|ATPUP11 (Arabidopsis thaliana purine permease 11) Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane. similar to ATPUP13 (Arabidopsis thaliana purine permease 13), purine transporter [Arabidopsis thaliana] (TAIR:AT4G08700.1); similar to Os02g0689200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047783.1); similar to putative purine permease [Oryza sativa (japonica cultivar-group)] (GB:BAD07671.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0819131987607296 0.716420171947462 0.493168415839805 1 1.03239268436874 14.7602561513921 0.0819131987607296 0.133555772627383
AT2G31110_at 5.48440867080918 5.57674080466686 5.1039317364502 5.4434378993927 6.04672153870957 5.87462252703403 4.72358873162744 4.7620288368036 5.32759995453035 4.87163005316518 4.26601521576017 4.22638798758801 4.78763925439643 4.75184810360291 4.50167433004179 5.36788373005906 5.00622470636318 4.74772239546524 5.0096460204809 0.167243333716112 0.160770332121864 0.167066054874793 0.165292671167748 0.160835744465696 0.170352015337208 0.164152696216201 0.166631948008345 0.17831761148724 0.164043006926863 0.164846637594731 0.161292188216293 0.162778599080128 0.167605704579817 0.162341137402368 0.161190962364577 0.166388557576264 0.163886379287607 0.16455292794152 2 2|0 -|/ 13265693 13269069 13267348 13265406 13269176 - gene protein_coding_gene FALSE TRUE AT2G31110.1|AT2G31110.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42570.1); similar to unknown [Pisum sativum] (GB:ABA29158.1); contains InterPro domain Protein of unknown function DUF231, plant; (InterPro:IPR004253) 0.0588928935519899 0.71485036558714 0.494089050691993 1 1.03128548496274 10.2652099972542 0.0588928935519899 0.0681064910813987
AT3G04470_at 6.86608191428797 7.00853569762162 6.04932226017777 6.55886010939495 6.8824070091545 6.73553705906354 6.609342238016 6.92212110879474 6.76733019243025 6.62195830682428 7.32043129898795 7.1970841243441 6.7503297967095 7.11038265740756 7.25443305788467 7.12670234499316 5.9272661747233 6.65948581876088 6.91491855632054 0.201505780420074 0.186536244258913 0.193249602835758 0.185418488299076 0.1953816540449 0.209014081706631 0.191066300950909 0.195428746286195 0.197528672769802 0.190532525872804 0.189123582745115 0.188699349662651 0.193037699616262 0.20385167977003 0.204169652097871 0.186346529358039 0.224230531712849 0.196910944969201 0.192057546926951 3 3|0 -|/ 1189856 1190398 1190105.2 1189646 1192644 - gene protein_coding_gene FALSE TRUE AT3G04470.1 similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT1G04780.1); similar to Os02g0810100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048467.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80109.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0723966197655106 -0.714264724289249 0.494432787540224 1 1.03087297256676 13.5471926384396 -0.0723966197655106 0.109356760393296
AT1G50320_at 10.9381034436095 11.1939926045893 11.0672641216745 11.1652130405097 11.2157504882589 10.8105423498047 11.5536783476950 11.7070571092568 11.5981897403811 11.4376570428880 11.6975995901072 11.6831677542433 11.4057559887179 11.4958419537566 11.6649044837110 11.7256461040308 11.2535530912517 11.7214212560348 11.247551985941 0.0740418492574004 0.072729796904238 0.0754549181967362 0.0754920907083293 0.0718535158292981 0.0760196245365072 0.074622034417113 0.0728783518281455 0.0746250940811755 0.0713194970945343 0.0741031358807705 0.0738418976685605 0.0732838997726065 0.0734347411778137 0.0784317766462514 0.0713194970945343 0.0761093363522155 0.0773761445707634 0.0713194970945343 1 1 - 18642289 18643096 18642785.182 18642052 18643204 - gene protein_coding_gene FALSE TRUE AT1G50320.1 ATHX (THIOREDOXIN X); thiol-disulfide exchange intermediate encodes a prokaryotic thioredoxin Identical to Thioredoxin X, chloroplast precursor (ATHX) [Arabidopsis Thaliana] (GB:Q8LD49;GB:Q9SEU5;GB:Q9SX49); similar to ATY1 (Arabidopsis thioredoxin y1), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G76760.1); similar to ATY2 (Arabidopsis thioredoxin y2), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G43560.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE78561.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin; (InterPro:IPR005746) -0.0651643441153638 -0.714142820313319 0.494504357052801 1 1.03078714350443 22.710843121909 -0.0651643441153638 0.0887134201877521
AT2G40000_at 9.78544947454848 9.91940839664964 9.91726116049248 9.85764624816888 10.5655028859353 10.1237322676949 8.59171627550522 8.35303587208535 8.56351539127662 8.34797690667788 7.23691456046694 7.0870340775981 7.90753093946714 7.86833009456797 6.21296193413808 8.19539395501284 7.88914833242223 7.49024154845533 8.80167562358164 0.256465094970918 0.25643784196583 0.253103218833586 0.252147242666869 0.262454057896700 0.258848201409392 0.252147242666869 0.252147242666869 0.264944636749055 0.252147242666869 0.25914387730952 0.269014507086388 0.257056182690091 0.259909094362018 0.292779775047741 0.258243088543396 0.25929391972079 0.255496528125212 0.252147242666869 2 2 - 16707758 16708298 16707940 16707588 16709106 - gene protein_coding_gene FALSE TRUE AT2G40000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G55840.1); similar to putative Hs1pro-1-like receptor [Glycine max] (GB:AAG44839.1); contains InterPro domain Hs1pro-1, C-terminal; (InterPro:IPR009743); contains InterPro domain Hs1pro-1, N-terminal; (InterPro:IPR009869) -0.0657392038517977 -0.713847935167525 0.494677510550726 1 1.03057957659769 17.6677192746908 -0.0657392038517977 0.0905240567709392
AT3G44620_at 8.14937236186717 8.09404149781842 7.87537800734806 7.94744321561666 8.17596499539396 7.29349322925896 8.8083369632936 8.9040816342864 7.21006632805416 7.54395310346488 8.36191984311433 8.22199733087941 8.05833740807706 8.29597679180069 8.54256543754370 8.79130995718556 7.54586028838329 7.97610433680415 7.38053576180741 0.214334825548092 0.214334825548092 0.223335004237063 0.231909988084472 0.226643576851609 0.225042878204342 0.221851277518319 0.225732429383374 0.244116570609755 0.232552531525967 0.223331869685430 0.214334825548092 0.216252967277269 0.234640034534983 0.229747242568715 0.217973432602353 0.234628036676146 0.230461750321519 0.219864094217689 3 3 + 16205041 16206365 16205386.6 16204816 16206820 + gene protein_coding_gene FALSE TRUE AT3G44620.1 protein tyrosine phosphatase similar to Low molecular weight phosphotyrosine protein phosphatase [Medicago truncatula] (GB:ABE89130.1); contains InterPro domain Low molecular weight phosphotyrosine protein phosphatase; (InterPro:IPR000106) 0.0900928036846889 0.713730627103153 0.494746403322362 1 1.03049702547317 15.9572359824432 0.0900928036846889 0.154414646783875
AT3G10525_at 8.79983760381804 9.22577186219983 9.58607217582303 9.9104852101442 9.84213653311974 9.60038082922195 9.95256014982798 10.2782264027010 9.95538523213696 10.0213006074272 9.64102077135585 9.54174628114012 9.887782489674 9.84396288947735 9.08167739973527 9.95671816443554 9.66277244809513 9.33563848691781 9.84133800442346 0.114928850934391 0.118524014176773 0.115233468022911 0.117123382223694 0.113368086113308 0.119904126639877 0.112212677766886 0.112206260037988 0.129800523645804 0.111961306602994 0.118142402314940 0.111961306602994 0.114673195269252 0.117789303004715 0.116803777497605 0.114183687062752 0.122110110623927 0.126464843407859 0.114386521632569 3 3 - 3281585 3281918 3281729.091 3281367 3282037 - gene protein_coding_gene FALSE TRUE AT3G10525.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04470.1) -0.0748783662673906 -0.713518480912933 0.494871008157759 1 1.03034776585086 19.4285619196985 -0.0748783662673906 0.116239174968370
AT3G07180_at 7.26252179588514 7.50275190815315 6.89000119242145 7.22859370981663 7.66885787910126 7.09255912467605 6.97174925401788 7.08646591705762 7.16223184487824 6.92259804513154 6.75819083013882 7.06490216672474 6.5979902266013 6.97772753385044 6.74998317092055 6.67203837907709 6.25000651692097 6.76324709605933 6.61291040125606 0.183658300642782 0.193633383577395 0.196162218901539 0.191282478886985 0.190155880295179 0.198043264459947 0.180227995785693 0.19170515607613 0.202187210692596 0.184256256365900 0.193040676272256 0.180227995785693 0.184354664375383 0.186370904635377 0.201095024878187 0.188836259037466 0.219695384347769 0.193000983451367 0.189423339933071 3 3|0 -|/ 2282529 2283424 2282990.143 2282239 2285519 - gene protein_coding_gene FALSE TRUE AT3G07180.1|AT3G07180.2 GPI transamidase component PIG-S-related similar to P0497A05.6 [Oryza sativa (japonica cultivar-group)] (GB:BAB92563.1); similar to Os01g0907300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045136.1); contains domain FAMILY NOT NAMED (PTHR21072); contains domain SUBFAMILY NOT NAMED (PTHR21072:SF5) -0.077927632996613 -0.712540946990779 0.495445423364014 1 1.02966050618422 14.0271913495371 -0.077927632996613 0.124507456878890
AT1G60990_at 5.51993031281123 4.82415632590629 5.31751585351653 4.89225581837819 5.49530763714043 5.17596058970802 6.58745721350628 5.89075989318739 5.47643757986026 5.92071593010187 5.77713461194072 6.02801561665507 5.71492074911607 6.19246576809742 6.35367958422002 6.1840227879522 6.52665452707645 5.31925364962128 5.82325995089706 0.22560025295884 0.219875574560088 0.225037013745323 0.220956154265667 0.225681490594278 0.224165280436398 0.226946368902642 0.238113061435268 0.235231850442562 0.228880331242228 0.224766414523813 0.221844794714359 0.226104465594540 0.227435238846790 0.230594538490888 0.222821785743839 0.231286881585207 0.225061934107170 0.223456703487263 1 1 - 22466471 22467582 22466939.727 22465691 22469089 - gene protein_coding_gene FALSE TRUE AT1G60990.1|AT1G60990.2 aminomethyltransferase| similar to aminomethyltransferase, putative [Arabidopsis thaliana] (TAIR:AT1G11860.2); similar to COG0354: Predicted aminomethyltransferase related to GcvT [Nostoc punctiforme PCC 73102] (GB:ZP_00106552.1); contains InterPro domain Glycine cleavage T protein (aminomethyl transferase); (InterPro:IPR006222) -0.106717685059250 -0.712416841722907 0.495518379904971 1 1.02957331262279 11.3389960715799 -0.106717685059250 0.193660249095401
AT4G13810_at 6.06379791115197 5.76929021830894 7.07673605317703 6.5601849187329 6.88178607932225 5.91680568908413 6.9335766128967 5.71427249253201 5.41768231811986 5.71744170801021 4.48219438210107 3.96700670681334 5.04987894368163 5.21306203321463 3.33864964636015 5.3121741581002 5.75931252146087 4.32208261404359 5.26784523369046 0.263314857827243 0.257403577139471 0.259063170540984 0.261673031267695 0.257403577139471 0.261186883123938 0.261865314075932 0.258589441248707 0.261332194525239 0.262675869457781 0.264367522548011 0.265713215093954 0.2688054470235 0.257403577139471 0.260282459829499 0.257471886270596 0.261629509611351 0.267582906272032 0.259318696083146 4 4 - 8005239 8005633 8005454.364 8005058 8007283 - gene protein_coding_gene FALSE TRUE AT4G13810.1 disease resistance family protein / LRR family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G13880.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13820.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT4G13920.1); similar to peru 2 [Lycopersicon peruvianum] (GB:AAV41396.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.149233708930786 -0.710594899932603 0.496590210189073 1 1.0282947937709 11.4386570197318 -0.149233708930786 0.288095713406274
AT4G39870_at 5.82873026235354 6.01509081605051 5.97220322059595 5.14355893462141 6.53889606326533 6.37566619334914 5.86723909666354 5.30495295696751 5.06005001230517 5.14309605576357 5.03753085327679 5.03114947885498 5.09814889216238 5.07261077255008 4.71419225947219 5.07345797115707 5.6898775399335 4.94001429718692 5.20476785901272 0.220027760467219 0.220336615543285 0.236717965921536 0.227281129960036 0.235171634999863 0.240871405740492 0.22828272346439 0.223956645548672 0.241540630724055 0.221303193926715 0.224498621365203 0.219856319376434 0.223668602123176 0.218058266363875 0.219068135530403 0.217680729457038 0.222801680677367 0.233120473011399 0.22280611816579 4 4|0 +|/ 18503084 18504242 18503614.8 18501889 18504460 + gene protein_coding_gene FALSE TRUE AT4G39870.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G05590.2); similar to Os06g0221100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057175.1); similar to Os02g0754000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048151.1); similar to TLD, putative [Medicago truncatula] (GB:ABE87991.1); contains InterPro domain TLDc; (InterPro:IPR006571) 0.0998646344981344 0.71049761248924 0.496647484664006 1 1.02822660478179 10.9898392265341 0.0998646344981344 0.178522582406476
AT1G66260_at 8.80866222490339 8.84623497614738 9.37271562687556 8.96263188337861 9.44337776414133 8.90531397308421 9.14900496898112 9.00311587262197 9.56973198974855 9.43664304082467 9.6551909529247 9.41228152540067 9.41813463712533 9.68815376313314 9.32582018618976 9.47889253189392 9.12731833380343 9.3944096524984 9.50823776860574 0.0891932542292735 0.0882379383699545 0.0930587035463532 0.0885699425677543 0.0889274779725671 0.0910295211845015 0.0900646480415742 0.0867735893735307 0.0894808504929829 0.0898346856811568 0.0896660666240709 0.0878131619019597 0.0888807998879447 0.0880363137902144 0.0896954854948728 0.0879376202477377 0.095655426602104 0.0859989826769594 0.0880822596361845 1 1|0 -|/ 24699560 24700461 24699878.9 24699303 24702097 - gene protein_coding_gene FALSE TRUE AT1G66260.1 RNA and export factor-binding protein, putative similar to RNA and export factor-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G37720.1); similar to ALY protein [Nicotiana benthamiana] (GB:CAJ44458.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0759547830089904 0.710463331549292 0.496667667327312 1 1.02820257914920 18.5325802267321 0.0759547830089904 0.119942820469941
AT4G37790_at 7.63931165293926 8.36010162554296 8.32006252011709 8.54545483574205 9.18560775470854 8.3932302187139 8.63816087758104 8.53517512013835 7.6233282797603 7.70038773739316 7.44584830256136 8.14068235711941 8.00411330122825 7.9483663717312 6.80544046187088 8.60968681042838 7.43805946756118 6.6739332891439 7.90079422382209 0.238446058659812 0.228241674516243 0.243601535645683 0.233347178234007 0.234129405116492 0.241513180663956 0.233836329800039 0.230349703247825 0.244302091179294 0.234918495204609 0.228471355331019 0.232033856766181 0.235473483814677 0.252826285775112 0.248848378144953 0.227461276678626 0.254000479516829 0.248430751521424 0.235167912106609 4 4 + 17768655 17769240 17769100 17768130 17769600 + gene protein_coding_gene FALSE TRUE AT4G37790.1 HAT22 (homeobox-leucine zipper protein 22); transcription factor Encodes homeobox protein HAT22. Identical to Homeobox-leucine zipper protein HAT22 (Homeodomain-leucine zipper protein HAT22) (HD-ZIP protein 22) (HAT22) [Arabidopsis Thaliana] (GB:P46604;GB:Q546G6); similar to HAT9 (homeobox-leucine zipper protein 9), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G22800.1); similar to homeobox protein (GB:AAA56908.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047) 0.104832197408524 0.709711938530423 0.497110175023966 1 1.02767622498004 16.1395229301174 0.104832197408524 0.190266351293329
AT1G44910_at 5.12340882202481 5.54732423399872 5.94562843547756 5.38478124698955 5.56615592005451 5.27461968667988 5.09611100662634 4.8508482638944 6.01176139071923 6.46234612923596 5.86487670159789 6.32931901392675 5.84411856117432 5.7970414481574 5.68774899360865 6.14306933570183 5.8246118836049 5.52046351065123 6.81857870512029 0.265832783639623 0.279047332734560 0.263616372771961 0.283631964232314 0.267366144267776 0.281338064982036 0.266027621968595 0.263281838995394 0.282418319088412 0.275365534684455 0.262421069800525 0.274873266922967 0.273986495550188 0.263551174151421 0.262421069800525 0.270885482051732 0.264669177420129 0.266306893852089 0.26470372142848 1 1|0 +|/ 16984404 16985212 16984900.2 16978044 16985405 + gene protein_coding_gene FALSE TRUE AT1G44910.1 protein binding similar to FF domain-containing protein / WW domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G19670.1); similar to Os01g0532200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043246.1); similar to formin binding protein 3-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87484.1); contains InterPro domain FF; (InterPro:IPR002713); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202) -0.0830579933206566 -0.709676400306272 0.497131110240834 1 1.02765134242559 11.5022604966739 -0.0830579933206566 0.138378932187764
AT3G62240_at 6.65652287740276 7.81053061054475 7.42470697237667 7.39746078076933 7.38300833392423 7.31952771558608 6.8663747326149 7.2128309232575 6.71160970101989 6.86265011176253 6.79799915698754 7.24519764707242 6.75395062680337 6.71807636743436 6.48288254062051 7.07126208081475 6.53240915876126 6.18317936737055 6.65172126993878 0.202860449423087 0.20414892567312 0.210469192770338 0.204256429714565 0.206919212186699 0.207264736964251 0.212490060390262 0.209050465238818 0.231073971491454 0.200916452957550 0.199616043950659 0.202582646946604 0.20563045291293 0.218811514015646 0.206995933191892 0.199616043950659 0.224111833204946 0.212545732642911 0.199616043950659 3 3 - 23044672 23045121 23044887.818 23044417 23047740 - gene protein_coding_gene FALSE TRUE AT3G62240.1 zinc finger (C2H2 type) family protein similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT2G47090.1); similar to Os05g0279400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055084.1); similar to putative zinc-finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAS98500.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.112868544350895 0.708874815926012 0.497603463751245 1 1.02709039373513 13.9914270245463 0.112868544350895 0.208854674770058
AT2G36850_at 8.55954961550867 8.7143290661331 8.53231957243779 8.71649316524972 9.06864412980964 8.49242237215073 9.0439653780834 8.85121810528583 8.83151504377622 8.62017646487431 8.49199477355084 8.77676569279685 8.6959906255045 8.75665353866417 8.53888597057528 8.89433977729301 8.54562429500056 8.6417087122774 8.7214635770953 0.136618469431027 0.128635508395151 0.13594574183333 0.124734579509060 0.128672822253216 0.136316230563836 0.131139436291857 0.124967487394793 0.13640833251161 0.126533730989519 0.129328538218621 0.127505714887933 0.123023667881126 0.12760782643626 0.131761091527459 0.124903160645513 0.136534632574323 0.126985282454216 0.127074179884367 2 2 - 15462038 15462912 15462346.455 15461776 15476446 - gene protein_coding_gene FALSE TRUE AT2G36850.1 ATGSL08 (GLUCAN SYNTHASE-LIKE 8); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a gene similar to callose synthase similar to ATGSL07 (GLUCAN SYNTHASE-LIKE 7), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G06490.1); similar to ATGSL10 (GLUCAN SYNTHASE-LIKE 10), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT3G07160.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to Putative callose synthase [Oryza sativa (japonica cultivar-group)] (GB:AAO15292.1); similar to putative beta 1,3 glucan synthase [Oryza sativa (japonica cultivar-group)] (GB:BAD67750.1); similar to putative callose synthase catalytic subunit [Gossypium hirsutum] (GB:AAD25952.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) -0.0732176683574506 -0.70884702834276 0.497619843359682 1 1.02707095798722 17.4434329014772 -0.0732176683574506 0.113090874015262
AT2G45640_at 7.33608363630864 7.88218584861774 7.3025354315599 7.82142450368126 8.03394994373524 7.6012237415801 7.11814971882016 7.92509663098763 7.43575610103634 7.63118989907291 7.86237849507617 7.73431321081345 7.60831683519732 7.74226936427736 7.67057773868571 7.7908932740652 7.3928825059993 7.56051569983599 7.65001028844236 0.178846885915988 0.180066392864252 0.192882404159495 0.189996855001378 0.181898456780621 0.185163120316334 0.180087831669956 0.179795957897269 0.192772327740074 0.182960796835296 0.182789536041851 0.179943351332322 0.181000639488030 0.210796968872857 0.194191730624294 0.188356867644871 0.202614851588957 0.196584867354842 0.179618056973748 2 2|0 -|/ 18807118 18808349 18807847.125 18806684 18808457 - gene protein_coding_gene FALSE TRUE AT2G45640.1 SAP18 (SIN3 ASSOCIATED POLYPEPTIDE P18); protein binding / transcription regulator Involved in the regulation of salt stress. Expression of AtSAP18 is induced by NaCl, cold, drought, ABA, and ethylene treatment. AtSAP18 and HDA19 associate with ERF3 and ERF4 both in vitro and in vivo. Identical to Probable histone deacetylase complex subunit SAP18 (Sin3-associated polypeptide, 18 kDa) [Arabidopsis Thaliana] (GB:O64644;GB:Q8L8K8); similar to P18 [Solanum chacoense] (GB:AAQ24533.1); contains InterPro domain Sin3 associated polypeptide p18; (InterPro:IPR010516) 0.111177037049427 0.70841694315914 0.497873403875325 1 1.02677022466921 15.2488747585835 0.111177037049427 0.205191227985837
AT1G02960_at 5.83814435397201 5.26064879791835 5.54499193947465 5.29196260102337 6.65178235639794 5.61099355634525 6.06133604799014 4.60499403103103 4.86455340490177 5.32378920573069 5.14617365854 5.43003205216143 5.19081740850414 5.30573360071554 5.4774647639536 5.56957086859376 5.52313682173516 5.40837706868885 5.95211457955456 0.182998463444981 0.182803209718911 0.180694600353196 0.18642339514713 0.183858124171915 0.190284422653585 0.194085922400328 0.180694600353196 0.188196734203427 0.194863246592238 0.1914498507186 0.182348281609841 0.188659425773082 0.183667734926506 0.186574748857397 0.184832345357466 0.19075847513024 0.195991599469295 0.192624904481404 1 1|0 -|/ 667151 667980 667575.333 666872 669837 - gene protein_coding_gene FALSE TRUE AT1G02960.1|AT1G02960.2|AT1G02960.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G02965.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE92670.1) 0.167456344607486 0.707971429133848 0.498136146634887 1 1.02645887221169 10.9888895490644 0.167456344607486 0.328425581137313
AT4G27280_at 7.08817441623722 7.05961198367505 7.96514880009545 8.59505128421289 6.84191371151914 6.21676549247439 5.99392599934012 6.33020344554789 7.80755268772652 6.40188743189726 6.82593551290332 6.22141743120233 6.14280430336155 6.8568652937938 6.5212511876168 6.41563348709572 5.78062523505341 6.4249664880492 6.78619648428056 0.169731490503819 0.162959408804728 0.169856306873559 0.175610352108711 0.162959408804728 0.175727583313415 0.165668135790395 0.167440899563182 0.170802722883156 0.167075421582502 0.162959408804728 0.165307504743518 0.179979544506035 0.164727986248979 0.166694640783685 0.167590386579372 0.175092878201473 0.170782844557682 0.165837123496105 4 4 - 13663786 13664138 13663939.364 13663582 13664246 - gene protein_coding_gene FALSE TRUE AT4G27280.1 calcium-binding EF hand family protein similar to PBP1 (PINOID-BINDING PROTEIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G54490.1); similar to Avr9/Cf-9 rapidly elicited protein 20 [Nicotiana tabacum] (GB:AAV92890.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0934413468125643 0.707656993954898 0.498321638081423 1 1.02623922942662 13.7099658426474 0.0934413468125643 0.164309527039172
AT2G29700_at 10.3282089933582 10.3797170898354 10.2000801452732 10.2252438903216 10.4712136374183 10.4434287218888 10.3710487500649 10.5643359791087 10.0607058166912 10.0528887685114 10.2650730688613 10.1438137636351 10.2279833127598 9.99741055616381 9.84698426064007 10.0805283146742 9.80310285250546 9.97369843067416 10.0908345225911 0.105497654032252 0.105081795977222 0.109395250033143 0.107910328358452 0.107059736015495 0.110083527096263 0.105081795977222 0.106834129839331 0.114063609994608 0.107237019097419 0.108525457559102 0.106650342909969 0.110444126754408 0.114020555449217 0.115180404304328 0.105657779491431 0.112327539031791 0.113804269382983 0.105081795977222 2 2 + 12704649 12705026 12704823.545 12704497 12705244 + gene protein_coding_gene FALSE TRUE AT2G29700.1 ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1) Encodes a protein containing one PH (pleckstrin homology) domain with a short N-terminal extension Identical to Pleckstrin homology domain-containing protein 1 (AtPH1) (PH1) [Arabidopsis Thaliana] (GB:Q9ST43;GB:O82386); similar to pleckstrin homology (PH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G05710.1); similar to pleckstrin homology (PH) domain-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB63699.1); contains InterPro domain Oxysterol-binding protein; (InterPro:IPR000648); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.0508274101541875 -0.706960670028548 0.498732568306779 1 1.02575313111303 20.4281433288689 -0.0508274101541875 0.0352191762346677
AT1G51110_at 8.89288141407423 8.74774920943348 8.93107747311575 8.65906284948987 9.7120384961192 8.94616146134796 10.3974121271177 9.8154363434427 9.84518824907154 9.93578578942701 10.2813018598487 10.0561421169254 10.0314516338068 10.2194964406348 10.0003135364835 10.4185243105478 9.88394378099329 10.1537014935444 9.99181370613745 0.0968156437025152 0.0972596881663419 0.0996154718058978 0.0974347678260402 0.0976293694683034 0.097496271605207 0.0988891304021 0.0998935680156697 0.0999916327887772 0.095380110527303 0.095264046896542 0.0991701647210739 0.0933216471828614 0.0965799265614219 0.0943447106186922 0.0949574325754753 0.0959336501557325 0.0952244538787377 0.096913672047163 1 1|0 +|/ 18939237 18941120 18940296.053 18938997 18941328 + gene protein_coding_gene FALSE TRUE AT1G51110.1 plastid-lipid associated protein PAP / fibrillin family protein similar to plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] (TAIR:AT3G26070.1); similar to PAP fibrillin [Medicago truncatula] (GB:ABE81557.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) -0.097468944223035 -0.704702815253156 0.500066493598121 1 1.02417983889166 19.2901634108393 -0.097468944223035 0.1748039505331
AT4G31870_at 8.22339815643153 8.17020091293145 8.63921785627729 8.61330040734963 8.1466157398257 7.97374809964228 9.10797669481646 8.97162125262653 7.176850482798 8.10335928593446 6.9606435677111 6.51299981066612 7.91833031364192 8.28060828576294 7.86003965333874 9.5394445550849 9.35417023515655 7.73710258021688 7.64751369002362 0.247471925538612 0.243955730625828 0.250324015672643 0.241404220828699 0.245008574696484 0.25275267343524 0.250450433130431 0.244287698866631 0.280844858179915 0.247298771951005 0.257645244310098 0.264009095233766 0.24083750264988 0.247672581281514 0.249094784773034 0.246650033869742 0.267950890982963 0.264930324022826 0.252238104433622 4 4|0 +|/ 15410404 15411294 15410936.111 15410211 15411623 + gene protein_coding_gene FALSE TRUE AT4G31870.1 ATGPX7 (GLUTATHIONE PEROXIDASE 7); glutathione peroxidase Encodes glutathione peroxidase. similar to ATGPX1 (GLUTATHIONE PEROXIDASE 1), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT2G25080.1); similar to glutathione peroxidase [Brassica napus] (GB:AAM12502.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) 0.0513820802588021 0.704486529375015 0.500194391666752 1 1.02402936174890 16.3122558207123 0.0513820802588021 0.0394540680297093
AT3G14720_at 6.68254075365446 6.72647749932872 7.10149870223562 6.94562461211954 6.91425756972677 6.55552407675948 7.96752047012417 7.91869208004568 7.09831851412317 7.58086864013917 7.37404740700127 7.57820180679483 7.62017897719317 7.63156654084778 7.15670468326432 7.58857662041603 7.29547097345023 7.6238448462248 6.78675824534885 0.181838828984079 0.171656345533312 0.175348206801465 0.175455897640063 0.172879568429285 0.176709604899658 0.175151354946161 0.172599236204241 0.183719677399667 0.173835677300505 0.175046659898664 0.169937210045146 0.178248489935756 0.172364981081246 0.185175205573187 0.173851882385953 0.186942951881307 0.171857235084738 0.176458621789738 3 0|3 /|+ 4948225 4948824 4948526.4 4946192 4949049 + gene protein_coding_gene FALSE TRUE AT3G14720.1 ATMPK19 (Arabidopsis thaliana MAP kinase 19); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 19 (EC 2.7.11.24) (MAP kinase 19) (AtMPK19) (MPK19) [Arabidopsis Thaliana] (GB:Q9LUC3); similar to ATMPK20 (Arabidopsis thaliana MAP kinase 20), MAP kinase [Arabidopsis thaliana] (TAIR:AT2G42880.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to ATMPK18 (Arabidopsis thaliana MAP kinase 8), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G53510.1); similar to double HA-tagged mitogen activated protein kinase 19 [synthetic construct] (GB:ABG54346.1); similar to mitogen-activated protein kinase homologue [Medicago sativa] (GB:AAD28617.1); similar to double HA-tagged mitogen activated protein kinase 18 [synthetic construct] (GB:ABG54345.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0581613059412878 -0.704185219067538 0.500372602242051 1 1.02381979818209 14.4209615280507 -0.0581613059412878 0.0686355610575601
AT2G05590_at 6.02836786956011 6.42135669243426 5.93081280725966 5.91525118702384 6.76516016356932 6.85074357089115 6.53752214287045 6.93900189673778 6.58554487996177 6.27886145854197 6.53025340317653 6.24425501308771 6.42977898973808 6.62745149824815 6.03801811887198 6.60121275806542 6.4195081029678 6.28907605368442 6.38405381679856 0.207008282485878 0.203965147837275 0.205651894806822 0.211486730650875 0.204011851049521 0.20302928247142 0.210630744412858 0.208955234873362 0.214947726116237 0.208898010636182 0.204994486277799 0.200993211879449 0.200838094942473 0.204652350124649 0.216973759788834 0.203139337660285 0.231646664962872 0.205327037379878 0.211433808095017 2 2|0 +|/ 2067585 2068556 2067963.2 2067094 2069203 + gene protein_coding_gene FALSE TRUE AT2G05590.1|AT2G05590.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G39870.1); similar to TLD, putative [Medicago truncatula] (GB:ABE87991.1); contains InterPro domain TLDc; (InterPro:IPR006571) -0.0673896805427088 -0.703055805550876 0.501040951652663 1 1.02303498581330 12.8303258549587 -0.0673896805427088 0.0983816739844788
AT1G78700_at 4.668608206789 4.5431464837448 3.84547195192250 4.46308832204428 4.68560855469833 4.63728044456486 4.53238279545789 4.90219874291976 4.87364780181876 4.84328267843739 5.02284505313697 4.93640485712243 5.56485703095386 5.24761672727489 5.14568950639969 4.76253465020285 4.53212347927356 4.80492392009427 4.99424429482522 0.242106111999671 0.242674460346913 0.245821267940507 0.252126336615816 0.240294051033775 0.242580628414959 0.240003586451915 0.244167200120301 0.239529947746798 0.25251362934174 0.248586471407089 0.240582605522839 0.235920897342073 0.241451379016028 0.242285087961479 0.237240190464887 0.241908849879964 0.250359123042353 0.246419297013282 1 1 + 29605849 29606304 29606070.091 29604242 29606575 + gene protein_coding_gene FALSE TRUE AT1G78700.1 brassinosteroid signalling positive regulator-related Identical to BES1/BZR1 homolog protein 4 (BEH4) [Arabidopsis Thaliana] (GB:Q9ZV88); similar to brassinosteroid signalling positive regulator-related [Arabidopsis thaliana] (TAIR:AT4G18890.1); similar to Os01g0203000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042330.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB33003.1); contains InterPro domain BZR1, transcriptional repressor; (InterPro:IPR008540) -0.0776611304450846 -0.702335849470743 0.501467290618638 1 1.02253527883809 9.4876478518099 -0.0776611304450846 0.126731094054589
AT1G53670_at 9.8940373975478 10.3235525853587 10.2715717523139 10.4645706351700 10.5810995216673 10.1709157026805 10.8902811398083 10.8745576928597 10.8621905139406 10.7060226429881 11.0170958556402 11.0495678361321 11.0447405471724 11.0993230098621 10.8607403474397 11.3042402905729 10.7489104393339 11.0102429449054 10.6875156701495 0.107967851354653 0.102083096838987 0.110798904580592 0.106411985893697 0.107506493922431 0.109695286246970 0.102004273292806 0.108203056941162 0.112266218368669 0.103214394704914 0.106695167867126 0.103755808511279 0.103104435059182 0.104205536055321 0.114225517046171 0.102925381821252 0.117837241256579 0.114116043262747 0.100643284236385 1 1|0 +|/ 20040510 20041451 20041198.778 20040309 20041887 + gene protein_coding_gene FALSE TRUE AT1G53670.1 transcription factor-related similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04830.1); similar to putative methionine sulfoxide reductase B [Oryza sativa (japonica cultivar-group)] (GB:BAD35399.1); similar to Os06g0472000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057620.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) 0.0706901244602813 0.701872733967137 0.501741655849064 1 1.02221407832933 21.31820693738 0.0706901244602813 0.108104446036470
AT3G10370_at 6.85631398013963 6.29920169361888 6.69491400269767 6.68627132574255 6.74491788507722 6.79299098090901 7.26531099223492 7.07475642930525 6.41134834054705 6.4533111070941 6.51621668293724 6.59271049221023 6.55811403700863 6.61992801128149 7.0059705322565 6.43562911274467 6.54571453497599 6.28470803459241 6.0010263459507 0.189555964664936 0.187698848161399 0.182956494811192 0.193768741813500 0.187912586983725 0.187157199169833 0.192738847823078 0.190162749747706 0.197780896004656 0.184790747964801 0.190100988681564 0.191880095104685 0.187556893076744 0.185638597605575 0.192468921301946 0.187159808755046 0.189391729603158 0.187143006923140 0.192348151333931 3 3 + 3218437 3218886 3218679.818 3216373 3219275 + gene protein_coding_gene FALSE TRUE AT3G10370.1 glycerol-3-phosphate dehydrogenase, putative mitochondrial FAD-dependent glycerol-3-phosphate dehydrogenase. possibly involved in storage lipid catabolism and glycerol assimilation, and in glycerol-3-phosphate shuttle which transports reducing power from cytosol to mitochondrion. similar to Os04g0224900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052278.1); similar to Glycerol-3-phosphate dehydrogenase (ISS) [Ostreococcus tauri] (GB:CAL52805.1); similar to OSJNBb0072N21.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE01766.2); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain FAD-dependent glycerol-3-phosphate dehydrogenase; (InterPro:IPR000447) 0.068594886667774 0.701674743839606 0.501858980644962 1 1.02207681640752 13.2310525916897 0.068594886667774 0.102244535382897
AT3G54290_at 5.28300304837357 6.22860720974606 6.1530233081787 6.34059209470893 7.26825086452567 6.20146400851601 7.02169107718493 6.68272374180207 5.71684436513045 6.35193424089391 6.25640806576338 6.2380488317933 6.06819099840886 6.08781346680836 5.53763637082881 6.52837886507048 5.82359641047346 6.45002898986463 6.06786923869091 0.243455373395437 0.232931216895012 0.238344467027608 0.235808584788499 0.233116302108429 0.254118834884412 0.237044150006223 0.232318729444843 0.245072890786891 0.250135031436951 0.232318729444843 0.232318729444843 0.245391620264841 0.234336224553381 0.247143927803029 0.232318729444843 0.272836065509371 0.235206232702574 0.237444229120937 3 3 - 20115604 20116291 20115869.636 20115377 20117022 - gene protein_coding_gene FALSE TRUE AT3G54290.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82039.1); similar to Os01g0861700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044877.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Hemerythrin HHE cation binding region; (InterPro:IPR012312); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.132519884005163 0.701346227045378 0.502053690819685 1 1.02184913876066 12.4820754348536 0.132519884005163 0.255645867110876
AT3G46030_at 7.74495179223715 8.03141399093342 7.60662928673217 7.51620250297683 8.1520561869207 7.74532727925827 8.04133798265365 7.9508853553483 8.2870915802709 8.00563770860266 8.6431088688821 8.7643131155414 7.88658099362263 8.18802615906245 8.85398491813659 8.61395177822746 7.83918492966799 7.97586895133515 7.79867966263791 0.154473367809876 0.147104839714127 0.155942971911309 0.158656013116375 0.145173532008674 0.149084363230052 0.145305818152261 0.148570635091241 0.151661615744618 0.153486054254822 0.144097255975538 0.144235612080560 0.145691727118971 0.147305203557230 0.144694504539870 0.144649069512526 0.155512282878080 0.148681825280761 0.149526301757494 3 3 - 16924606 16924953 16924712.091 16924433 16925116 - gene protein_coding_gene FALSE TRUE AT3G46030.1 histone H2B, putative Identical to Histone H2B.7 (HTB11) [Arabidopsis Thaliana] (GB:Q9LZT0); Identical to Histone H2B.6 (HTB9) (H2BAt) (H2B) [Arabidopsis Thaliana] (GB:O23629); Identical to Histone H2B.11 (HTB4) [Arabidopsis Thaliana] (GB:P40283;GB:Q5PP00;GB:Q8LDE5;GB:Q9FJE5); similar to histone H2B [Arabidopsis thaliana] (TAIR:AT3G45980.1); similar to Histone H2B (GB:O22582); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124); contains InterPro domain Histone H2B; (InterPro:IPR000558) 0.0640321737422529 0.701101597987538 0.502198711985337 1 1.02167966036962 16.0366491045392 0.0640321737422529 0.088891440712918
AT1G56230_at 6.53672681766177 6.8383998298724 6.41262676063484 6.77396791191201 7.79676374601276 7.32111135637625 7.32056946404323 7.43215279259716 5.81067148149529 7.09379470298636 7.35306715089157 7.22031231969499 6.8456910781042 7.19499769913891 6.2140455255626 6.64123436690583 6.58510835186949 6.4987789749523 7.24208216586124 0.222463580229747 0.218383158299236 0.238298925986133 0.218383158299236 0.236765838665203 0.236679855513277 0.235935176477039 0.218383158299236 0.237020622029830 0.228666920264317 0.22965837313642 0.222894051444439 0.220541715973656 0.233829932449230 0.22949143265453 0.225474753805195 0.226207793321582 0.229802432876741 0.226291535268335 1 1|0 -|/ 21049841 21050414 21050104.9 21049674 21052708 - gene protein_coding_gene FALSE TRUE AT1G56230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22660.2); similar to Os01g0347100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042967.1); similar to hypothetical protein [Oryza sativa] (GB:AAD27671.1); contains InterPro domain Protein of unknown function DUF1399; (InterPro:IPR009836) 0.0738967671496773 0.700050993909133 0.502821830760131 1 1.02095239764359 13.8213751099743 0.0738967671496773 0.117405833189831
AT4G32140_at 5.40717366121411 5.46328641850523 5.39085573733185 5.47245827669115 5.57405326997603 5.11824541034302 5.02471232633249 5.25632795683283 5.37406229441869 4.95322505192765 4.85038180243089 5.03998509371815 4.67033133930009 5.32486540781764 4.42873896571272 4.97272505302049 4.81727782320720 4.79238267503103 4.94799954453272 0.221842813635838 0.217786009528707 0.229388120871105 0.218950920637849 0.228818181313890 0.232771526368287 0.221535745211805 0.230380260030975 0.229419320347067 0.217411705447305 0.221302621532701 0.219449053479115 0.228344434922029 0.222960738395318 0.222922590243362 0.217411705447305 0.224768537920388 0.219458605145624 0.231399116009618 4 4|0 -|/ 15523189 15523929 15523443.5 15522890 15525454 - gene protein_coding_gene FALSE TRUE AT4G32140.1 similar to membrane protein [Arabidopsis thaliana] (TAIR:AT3G07080.1); similar to H0811D08.4 [Oryza sativa (indica cultivar-group)] (GB:CAJ86111.1); similar to Os04g0645600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054066.1); contains InterPro domain Protein of unknown function DUF6, transmembrane; (InterPro:IPR000620) -0.0643240970327822 -0.699903902067265 0.50290911039374 1 1.0208506526353 10.3153132906481 -0.0643240970327822 0.0901238086966733
AT1G79690_at 8.82395166552799 8.8091315098508 9.12826427248229 9.17584801343988 9.00143593372135 8.6309841536858 8.91946096154466 8.80664512308315 8.56848163149407 8.6412308112424 8.50776128888148 8.63649287651635 8.51817095605442 8.56420767201424 8.54514677154564 8.61532101071733 8.40557511605996 8.69210411983768 8.5601465169651 0.132443566357713 0.135574375478887 0.137639962830478 0.137367716024876 0.130689295511212 0.137965284617522 0.130813333390599 0.140470649950153 0.134200686614126 0.137143088097591 0.130775099187563 0.129310688452787 0.133257112691148 0.134522457194048 0.131322603143497 0.125197589783759 0.132197181544479 0.133100788122752 0.130437509080191 1 1 + 29994063 29995023 29994593.091 29990069 29995281 + gene protein_coding_gene FALSE TRUE AT1G79690.1 ATNUDT3 (Arabidopsis thaliana Nudix hydrolase homolog 3); hydrolase Identical to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3) (NUDT3) [Arabidopsis Thaliana] (GB:Q8L831;GB:Q8GY80;GB:Q93ZN1;GB:Q9MA07); similar to IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT5G16440.1); similar to IPP2 (ISOPENTENYL PYROPHOSPHATE:DIMETHYLLALLYL PYROPHOSPHATE ISOMERASE 2), isopentenyl-diphosphate delta-isomerase [Arabidopsis thaliana] (TAIR:AT3G02780.1); similar to MutT/NUDIX family protein [Solibacter usitatus Ellin6076] (GB:YP_822815.1); similar to Os02g0793300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048368.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086); contains InterPro domain Isopentenyl-diphosphate delta-isomerase, type 1; (InterPro:IPR011876); contains InterPro domain Isopentenyl-diphosphate delta-isomerase; (InterPro:IPR002667) 0.0574901341084368 0.699619013283639 0.503078181384202 1 1.02065364566911 17.4872404356773 0.0574901341084368 0.0675679927193448
AT3G26030_at 8.33626211320722 8.80176040058899 8.25655639047069 8.57270491932475 9.59139189613117 8.82382289012425 9.17500174914465 9.3082267646984 9.01728095170554 8.92050663120692 9.07547082233266 8.78539399779402 9.09304094071046 9.00064732431265 8.38363792009379 9.08661290731461 8.9275617883755 8.9094831122134 9.06178137969851 0.149997775480142 0.145714915537161 0.162045510535142 0.152844037597639 0.145714915537161 0.160595406128055 0.152591035490185 0.146466279258740 0.145714915537161 0.156857988451696 0.155057269343437 0.150895129300181 0.146438936048115 0.158115482200404 0.152588402130621 0.148791535872119 0.162404143956118 0.155907303638454 0.148262779764074 3 3|0 +|/ 9519829 9520341 9520042 9518550 9520796 + gene protein_coding_gene FALSE TRUE AT3G26030.1 ATB' DELTA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta); protein phosphatase type 2A regulator protein phosphatase 2A regulatory subunit isoform B' delta Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B' delta isoform (PP2A, B' subunit, delta isoform) (AtB' delta) (B'DELTA) [Arabidopsis Thaliana] (GB:Q9ZQY6); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to Os03g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051871.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.0931594760620178 -0.699240495098121 0.503302873102571 1 1.02039200140015 17.8120096017181 -0.0931594760620178 0.166308109858776
AT1G66150_at 10.2564262460702 10.5347951073005 10.262518546462 10.3522501316653 10.9172218947921 10.7678997670491 10.7870946367297 10.9396862024641 11.4021718361969 10.9962245944075 11.5459458065467 11.0764471819697 11.3213150373880 11.3994945789441 11.0444792829602 11.0981163159507 10.5869717361874 11.1200139067540 11.2219445190976 0.0676486963927466 0.0660025621127053 0.0685622536371289 0.0692320796962224 0.0660025621127053 0.0715867925355009 0.0701601107104636 0.066563289955471 0.0715337552320461 0.0660025621127053 0.0669810976200204 0.0670421576227284 0.0693742017915422 0.0701026990704373 0.0677525089405567 0.0667115918680859 0.0752507865769893 0.0700665057358617 0.0660025621127053 1 1 + 24637436 24638040 24637821.545 24635072 24638412 + gene protein_coding_gene FALSE TRUE AT1G66150.1 TMK1 (TRANSMEMBRANE KINASE 1) receptor-like transmembrane kinase I (TMK1) Identical to Putative receptor protein kinase TMK1 precursor (EC 2.7.11.1) (TMK1) [Arabidopsis Thaliana] (GB:P43298); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G23750.1); similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G24650.1); similar to leucine-rich repeat protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G01820.1); similar to TMK [Oryza sativa (indica cultivar-group)] (GB:CAA69028.1); similar to LRR receptor-like protein kinase [Nicotiana tabacum] (GB:AAF66615.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE85728.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0561051494393887 -0.698679523136409 0.503635986664103 1 1.0200044689701 21.7801757152691 -0.0561051494393887 0.0626644926333533
AT4G21190_at 5.53840096084846 5.67439928401072 5.7731298022469 5.67617253195602 6.07929011780237 5.9986135443821 6.17730794161501 6.18785951950104 5.60927174231869 5.24015284004062 5.74194939872349 5.66153544936653 4.97415190146254 5.4829926150946 5.80829731179174 6.08736686854814 5.50559941389241 4.96537415682462 5.3994392586506 0.232574938055424 0.226916037433952 0.231851005514401 0.229513444877080 0.234628548621233 0.234744760210057 0.234389727674318 0.231770914186262 0.252662757497499 0.23093027995529 0.226916037433952 0.228367824372296 0.232936186310811 0.234071598647432 0.231642401622814 0.230754408338381 0.238871999138792 0.237049421815294 0.234581963800222 4 4|0 -|/ 11292504 11293118 11292806 11292202 11294019 - gene protein_coding_gene FALSE TRUE AT4G21190.1 EMB1417 (EMBRYO DEFECTIVE 1417) similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G18975.2); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os01g0757700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044296.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) 0.0497150075313735 0.698168035826984 0.503939835869605 1 1.01965136104819 11.3604948810285 0.0497150075313735 0.0321510702739956
AT3G07170_at 7.31442152746067 7.07485241279966 7.23912535424727 6.97680102472632 7.33117599615637 6.77258441181207 7.5137388778046 7.72926550930262 6.6264260437873 6.47293445451866 6.36500445131226 7.04390713899509 6.77099056444105 6.80558665993464 6.95521558644681 6.74133535486443 6.72452733417487 6.79968080002801 6.69231465544482 0.16791056157347 0.167757306322610 0.166201012896734 0.171127699384548 0.164303082602400 0.176007470962127 0.17913577043231 0.170324607085908 0.174513842566935 0.164150461830208 0.167551358136531 0.164922481270723 0.171144319094588 0.162980936853912 0.163567152690582 0.164051086497825 0.172538876054635 0.161546080616189 0.167494765804330 3 3|0 +|/ 2280484 2281850 2281129.778 2280200 2282345 + gene protein_coding_gene FALSE TRUE AT3G07170.1 sterile alpha motif (SAM) domain-containing protein similar to sterile alpha motif (SAM) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G48680.1); similar to hypothetical protein LOC449657 [Danio rerio] (GB:NP_001005928.1); similar to OSIGBa0135C09.6 [Oryza sativa (indica cultivar-group)] (GB:CAH66355.1); similar to Os04g0378200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052587.1); contains InterPro domain Sterile alpha motif-type; (InterPro:IPR013761); contains InterPro domain Sterile alpha motif SAM; (InterPro:IPR001660); contains InterPro domain Sterile alpha motif homology; (InterPro:IPR010993) -0.0747959750409952 -0.69775159144743 0.504187309566356 1 1.01936403517344 13.9304986580511 -0.0747959750409952 0.120479322306811
AT3G04520_at 7.95944795740188 8.0902405619645 8.2580171961824 8.26220114869546 8.38142437372376 8.1125644158733 8.8617925601805 8.63803660872123 7.65290412585011 7.76795974247676 7.65794272784468 7.68869876496695 7.86211843843046 8.17444943414702 7.77925275520898 8.23911222473002 8.31967516505781 7.78552221097019 7.65343929838559 0.149980058149452 0.152869086154833 0.157958786969844 0.154150229287782 0.154192337471774 0.161689632965872 0.150131314088755 0.153023007497976 0.157360997670138 0.151014674059982 0.153618590905320 0.153155104633483 0.159361482158028 0.149859995508659 0.157043297407261 0.150888012503501 0.155129922334445 0.153642106009879 0.161097211848671 3 0|3 /|- 1217527 1218488 1217932.375 1217245 1219765 - gene protein_coding_gene FALSE TRUE AT3G04520.1 THA2 (THREONINE ALDOLASE 2); threonine aldolase Encodes a threonine aldolase, involved in threonine degradation to glycine. Expressed in vascular tissue through out the plant. similar to THA1 (THREONINE ALDOLASE 1), aldehyde-lyase [Arabidopsis thaliana] (TAIR:AT1G08630.4); similar to L-allo-threonine aldolase-related protein [Solanum tuberosum] (GB:ABB72802.1); contains InterPro domain Aromatic amino acid beta-eliminating lyase/threonine aldolase; (InterPro:IPR001597) 0.0565422189085301 0.697705851883407 0.50421449511756 1 1.01933248638163 16.1353560298797 0.0565422189085301 0.0646299775762909
AT2G26930_at 7.5433288195902 7.29964333241943 6.92950358147078 7.13845233388723 7.04741358688141 6.96192005099413 7.74280684136491 7.52772425510906 7.15680739117821 7.27747844131718 7.05914007463148 7.55930067232454 7.11009829869147 7.47953995418966 7.80908009039083 7.60006944742672 7.56685833558211 7.29963883487894 6.69035920955425 0.179399758659554 0.174011838848755 0.194413587290024 0.186410465382946 0.1805932657957 0.182287433374795 0.176991685116835 0.195233136793799 0.185025421173734 0.182189136318301 0.173944470296368 0.179270847121133 0.189451333175441 0.174984041313433 0.179413529128245 0.176910333849313 0.182908678984693 0.181189280434995 0.179770475083895 2 2|0 -|/ 11498913 11500173 11499638.222 11498785 11501344 - gene protein_coding_gene FALSE TRUE AT2G26930.1 ATCDPMEK (PIGMENT DEFECTIVE 277); 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase Encodes a 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase. Identical to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (EC 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase) (CDPMEK) (ISPE) [Arabidopsis Thaliana] (GB:O81014;GB:Q9GI18); similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) (Ripening-associated protein pTOM41) (GB:P93841); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; (InterPro:IPR004424); contains InterPro domain GHMP kinase; (InterPro:IPR006204) -0.0575680288239619 -0.697504875110382 0.504333957597559 1 1.01919388461923 14.5123561306468 -0.0575680288239619 0.068485027368846
ATCG01070_at 8.88812005975408 9.77632561811583 9.49996107385805 9.9489870406199 9.07691717661335 9.06597745094389 9.25850395230121 9.6335452414369 9.82493156559238 10.2357706046530 10.472459764677 10.7519960063531 10.0651377010861 10.3199644190875 10.0850694130004 10.6840677867021 9.60321102477993 10.1868846433455 10.1774290781749 0.16561824836585 0.152576508649715 0.158041007360098 0.15707087270706 0.160316820642343 0.161735145124164 0.153664284458702 0.161098746209267 0.162817635175925 0.156272759941127 0.164778756635488 0.164774284651764 0.161279103277116 0.163402895793867 0.160441171315071 0.158715323385389 0.166530466777805 0.156823725288530 0.152576508649715 C C - 117815 118074 117943.8 117804 118109 - gene protein_coding_gene FALSE TRUE ATCG01070.1 NADH dehydrogenase ND4L Identical to NAD(P)H-quinone oxidoreductase chain 4L, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4L) (NADH-plastoquinone oxidoreductase chain 4L) (ndhE) [Arabidopsis Thaliana] (GB:P26289); similar to NADH dehydrogenase subunit 4L [Oenothera elata subsp. hookeri] (GB:NP_084753.1); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 4L; (InterPro:IPR001133); contains InterPro domain NADH dehydrogenase (ubiquinone), type 1; (InterPro:IPR003215) 0.100279364839503 0.696767506539136 0.504772408114981 1 1.01868566737830 19.5687801655483 0.100279364839503 0.184066156635878
AT1G80360_at 7.01556665427957 6.92207753734582 7.4222814256285 7.17960242701513 7.03003266229146 7.04760508886822 7.05141904707781 7.03305230977127 6.9448384005947 7.19776834191003 6.98674694426177 7.08673847891227 6.80404550292995 6.90497621990761 6.70187794718342 6.70937276247026 7.19207697084423 7.1857721757835 6.87829420303125 0.211650186469164 0.20661996082531 0.206957167303441 0.205909717860018 0.203931180977003 0.198185787442194 0.206505958881982 0.203474495821880 0.202835318046459 0.200231592002721 0.200599900336780 0.198514514604863 0.200215956088517 0.213814025947962 0.202538469959609 0.19895062195725 0.214955740917743 0.196695797751767 0.204166515742529 1 1 - 30213638 30214352 30213908.818 30213391 30215695 - gene protein_coding_gene FALSE TRUE AT1G80360.1 aminotransferase class I and II family protein similar to AAT/ATAAT/MEE17 (maternal effect embryo arrest 17), aspartate transaminase [Arabidopsis thaliana] (TAIR:AT2G22250.3); similar to aspartate aminotransferase [Anabaena variabilis ATCC 29413] (GB:YP_324196.1); similar to Os01g0178000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042188.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.0519177036367551 0.696766674806058 0.504772902810673 1 1.01868509439028 14.0644135726007 0.0519177036367551 0.0452197626739110
AT1G01050_at 9.8864455046731 9.95338706399873 10.1108743921285 9.99771895347197 10.0280192393589 9.925156074103 10.3440467870365 10.1383234794764 9.70765649401117 9.77688655426536 9.6044594175723 9.5593937582431 9.49412981188814 9.74587554236255 9.5784847097416 9.67377448375104 9.74727501707204 9.57740730503347 9.50014810731316 0.106407794171105 0.102064408996383 0.108302947631098 0.10184188783085 0.100641506756163 0.109241072582617 0.10627455733285 0.106315360485703 0.111711577602823 0.106474220278197 0.103483717052078 0.103541842013800 0.10241462434822 0.0997129930886957 0.09903161540596 0.101712861760969 0.107364027246128 0.100545808124569 0.106678473711483 1 1|0 -|/ 31393 32565 31871.875 31170 33153 - gene protein_coding_gene FALSE TRUE AT1G01050.1 inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT4G01480.1); similar to inorganic pyrophosphatase, putative (soluble) / pyrophosphate phospho-hydrolase, putative / PPase, putative [Arabidopsis thaliana] (TAIR:AT2G46860.1); similar to soluble inorganic pyrophosphatase [Populus tremula x Populus tremuloides] (GB:AAD46520.1); contains InterPro domain Inorganic pyrophosphatase; (InterPro:IPR008162) -0.0520361284262183 -0.696650148405658 0.504842213029375 1 1.01860482433083 19.6900782988999 -0.0520361284262183 0.0458474801248206
AT1G75230_at 5.55684639952275 5.83873723364186 5.37560686182942 5.7855944984095 5.93486772678335 5.42145475086207 5.650598146457 5.48622494357232 5.60955824395045 4.92191835139231 4.94237736314785 4.89018156211481 4.93420235868611 4.68684353318994 5.08360917542935 4.96140531989101 5.43230483153209 5.15704693001892 4.9521766657562 0.194630780498359 0.195094139206452 0.201275831126349 0.199454965600129 0.199531311585275 0.212273855113907 0.194454266609545 0.193362119706871 0.203305353788766 0.194459757163473 0.199023143068629 0.195528189871398 0.194597647541273 0.203813827244503 0.200453195200205 0.197548829551747 0.201151183308786 0.202577113509837 0.193950458538693 1 1 + 28238689 28239211 28238925.727 28238010 28240402 + gene protein_coding_gene FALSE TRUE AT1G75230.1|AT1G75230.2 HhH-GPD base excision DNA repair family protein similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G19480.1); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265)|similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G19480.2); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) -0.0769710453878927 -0.695335566779015 0.505624542029242 1 1.01770008718528 10.7173483891102 -0.0769710453878927 0.126952285462021
ATCG00550_at 11.7648704023263 11.9710228257154 11.7920743997263 11.8329077274628 11.7558413212941 11.4120736875865 12.0612433714160 12.0540414075003 12.5157182784592 12.5283472821852 13.0587201863736 12.9711723085289 12.5044467252582 12.6306375284296 12.5258730170121 12.9029548963417 12.1029031971390 12.6700869104032 12.5211802332161 0.0815327192035522 0.0801275992659274 0.0801275992659274 0.081189271414087 0.0812626602756777 0.0938494782759864 0.0802268113380922 0.0847724005826375 0.0937871637849195 0.0815215927067397 0.0813092834563477 0.0801275992659274 0.0801275992659274 0.087209627953397 0.08278594650663 0.0801275992659274 0.0889150451763185 0.0858491407572566 0.0819299315771678 C C - 63538 63636 63588.909 63538 63660 - gene protein_coding_gene FALSE TRUE ATCG00550.1 PSII component Identical to Photosystem II reaction center protein J (PSII-J) (psbJ) [Arabidopsis Thaliana] (GB:P56781;GB:Q42427); similar to photosystem II protein J [Nicotiana tabacum] (GB:NP_054514.1); contains InterPro domain Photosystem II protein PsbJ; (InterPro:IPR002682) -0.0577347347448827 -0.69532832910118 0.505628851385578 1 1.01769511016479 24.4268083649481 -0.0577347347448827 0.0697378596216923
AT4G33380_at 9.05789559784412 9.22110921913062 8.84541020531077 9.22554168121884 9.26564741638871 9.2192704337873 8.88464947881543 9.35613954387285 8.85043826143774 9.13232941036861 9.18433925201619 9.17182977135498 9.20807138923956 9.30276120773872 9.13722099680537 8.93632761600656 9.2672518890821 9.10810956910766 9.11639721288711 0.124873054452996 0.124051313419029 0.125965508869771 0.122035365468619 0.121375716212098 0.126137463226806 0.121375716212098 0.124396717729589 0.144919794781295 0.123377949551030 0.136202029707869 0.128603426423142 0.123425966270353 0.136658382241345 0.127976616572438 0.130861334419719 0.142674459103578 0.129879668215186 0.133812785723665 4 4 + 16073905 16074565 16074183.143 16071895 16074876 + gene protein_coding_gene FALSE TRUE AT4G33380.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G04555.1); similar to Os02g0761600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048198.1); similar to Os06g0214100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057130.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL57590.1) 0.0702264870575278 0.69465553315278 0.506029538289347 1 1.01723265914010 18.2332299085378 0.0702264870575278 0.108844688277066
AT3G15510_at 7.17810788547629 8.0478007491634 6.09358361269611 6.41515081026494 8.87737402311609 8.60692420036413 6.19537476481839 6.43987670449584 3.27321195245501 4.81414077756936 3.20790723308027 3.33825902516384 4.6530679540622 4.08040850765785 2.63322041630774 4.12365641125924 4.53386036145567 3.93073145908234 4.37900209860129 0.305461052113779 0.299464001008169 0.311983319774317 0.296940152558638 0.296940152558638 0.301113182608893 0.316536465528594 0.297752840517521 0.310209122931058 0.296940152558638 0.301533370194652 0.297016340674253 0.301964401530614 0.296940152558638 0.297584637033199 0.296940152558638 0.298985476184099 0.297171122924639 0.296940152558638 3 3 + 5244551 5244943 5244746.909 5243517 5245389 + gene protein_coding_gene FALSE TRUE AT3G15510.1 ATNAC2 (Arabidopsis thaliana NAC domain containing protein 2); transcription factor Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. similar to NAM (Arabidopsis NAC domain containing protein 18), transcription factor [Arabidopsis thaliana] (TAIR:AT1G52880.1); similar to NAM-like protein [Prunus persica] (GB:CAG28971.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0950777235442971 0.694603783613508 0.506060366190238 1 1.01719710512469 11.2158193590747 0.0950777235442971 0.172421461707186
AT3G15730_at 10.5396052848301 10.6432137155975 10.4036791285473 10.4205816836464 10.6679581507417 10.4177849527542 10.3115642712236 10.4342805577428 10.1995296277725 10.2220448956634 10.2824151681710 10.3699452195513 10.3826603497679 10.2416040848652 10.0882369424924 10.3725428225966 10.1664300995243 10.1318764357064 10.0092852450305 0.109128906030215 0.107031857260699 0.104897155570055 0.105837866361058 0.107116299547554 0.111962905863555 0.104253071588891 0.108460628729678 0.112723866035497 0.106386440250713 0.109687991577206 0.110204768665961 0.104253071588891 0.109619232528278 0.109027284919750 0.107480597450216 0.104253071588891 0.109807074428689 0.104955607692157 3 3 + 5332869 5333440 5333188.091 5330329 5333752 + gene protein_coding_gene FALSE TRUE AT3G15730.1 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1); phospholipase D Encodes phospholipase D alpha 1. Positive regulator of abscisic acid (ABA) mediated stomatal movements. Identical to Phospholipase D alpha 1 (EC 3.1.4.4) (AtPLDalpha1) (PLD alpha 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (PLDalpha) (PLDALPHA1) [Arabidopsis Thaliana] (GB:Q38882;GB:Q944M4;GB:Q9LW06); similar to PLDALPHA3 (PHOSPHLIPASE D ALPHA 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT5G25370.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to PLDALPHA2 (PHOSPHLIPASE D ALPHA 2), phospholipase D [Arabidopsis thaliana] (TAIR:AT1G52570.1); similar to Phospholipase D alpha 1 precursor (PLD 1) (Choline phosphatase 1) (Phosphatidylcholine-hydrolyzing phospholipase D 1) (GB:O82549); similar to phospholipase D (GB:AAC49274.1); similar to Phospholipase D alpha 2 precursor (PLD 2) (Choline phosphatase 2) (Phosphatidylcholine-hydrolyzing phospholipase D 2) (GB:P55939); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.053089494543074 0.694538472379855 0.506099274649976 1 1.01715223702297 20.6788753747137 0.053089494543074 0.0515302973059292
AT3G12120_at 11.5595394692528 11.7509347297744 11.5294254470287 11.5554492764759 11.9770045147669 11.7710067220172 11.770128667933 12.0596469803004 11.7296524917509 11.8767199007553 12.2759120585933 12.1088165268065 12.3070044425636 12.1227290287197 11.9544697968469 11.8162103187536 11.8553657162937 12.3307111608868 12.1060159370268 0.085779017019038 0.0762364814962115 0.0786184449192862 0.0816462729559296 0.0771118699133623 0.0776374087289436 0.0791875023332057 0.076211017154617 0.0818423685500819 0.0762078888639567 0.0763346222738032 0.0764062882230719 0.0762078888639567 0.0844932521388918 0.0785604737020634 0.0762078888639567 0.0849319609298496 0.0789800253899445 0.0762485144155635 3 3 - 3860793 3861152 3860964.727 3860291 3863056 - gene protein_coding_gene FALSE TRUE AT3G12120.1|AT3G12120.2 FAD2 (FATTY ACID DESATURASE 2); delta12-fatty acid dehydrogenase|FAD2 (FATTY ACID DESATURASE 2) Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5. Identical to Omega-6 fatty acid desaturase, endoplasmic reticulum (EC 1.14.19.-) (Delta(12) desaturase) (FAD2) [Arabidopsis Thaliana] (GB:P46313); similar to FAD3 (FATTY ACID DESATURASE 3), omega-3 fatty acid desaturase [Arabidopsis thaliana] (TAIR:AT2G29980.1); similar to delta-12 desaturase [Brassica carinata] (GB:AAD19742.1); similar to fatty acid desaturase 2 [Brassica rapa] (GB:CAD30827.1); similar to Omega-6 fatty acid desaturase, endoplasmic reticulum (Delta(12) desaturase) (GB:Q39287); contains InterPro domain Fatty acid desaturase; (InterPro:IPR005804); contains InterPro domain Fatty acid desaturase subdomain; (InterPro:IPR010257); contains InterPro domain Fatty acid acyl-CoA desaturase; (InterPro:IPR012261) 0.0577159831311871 0.694262041166084 0.506263976232645 1 1.01696237312241 23.746907888124 0.0577159831311871 0.069988862330562
AT4G19150_at 6.26406977732808 6.27295670608298 5.94307807976706 6.09610421771113 6.51555254054014 6.25917706381657 5.54169434956844 6.49648570819308 6.02558053923389 6.16051487708068 6.12255866211328 6.3848649451293 6.09923393730405 5.78777206290075 6.2328638427235 5.73771112053282 5.18263768301491 5.59777935538557 6.24355981484555 0.213652439239573 0.221054563284004 0.208872895504566 0.206504201271681 0.218179524119690 0.212751389406499 0.213013905612762 0.203483839009336 0.213484123162502 0.205881014528348 0.209744137067834 0.208522618040468 0.213468130889461 0.217157931923771 0.203483839009336 0.203483839009336 0.22799093446865 0.209178492575157 0.203483839009336 4 4 - 10471616 10472130 10471917.909 10471342 10472753 - gene protein_coding_gene FALSE TRUE AT4G19150.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT2G03430.1); similar to PREDICTED: similar to ankyrin 2,3/unc44, partial [Strongylocentrotus purpuratus] (GB:XP_001199844.1); similar to Os10g0580700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065515.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0951821845415515 -0.693218521088163 0.506886021571723 1 1.01624624474391 12.1918378611383 -0.0951821845415515 0.173128274259143
AT4G03080_at 8.48445950985182 8.59791656834997 8.86748657087122 8.64984636146822 8.70114982732104 8.54271765715727 8.44631786247563 8.49244915604844 8.68197129110934 8.27208316032453 8.71756147789976 8.29978349059602 8.61774144314201 8.65607321441847 8.26711316163514 8.29385772302493 8.12709813234508 8.61393489587116 8.63103313441413 0.140102461162877 0.142031994160013 0.142020052106854 0.145413207925622 0.140799603982918 0.144921773752233 0.147941410927225 0.152682123359589 0.162847127177446 0.14477002012245 0.145654370735955 0.143837024613271 0.142282542002974 0.153178380767838 0.156116493833950 0.146696137929558 0.165173388852891 0.151318468095679 0.143923759430053 4 4|0 -|/ 1359936 1361168 1360536.556 1359655 1365451 - gene protein_coding_gene FALSE TRUE AT4G03080.1 kelch repeat-containing serine/threonine phosphoesterase family protein Identical to Serine/threonine-protein phosphatase BSL1 (EC 3.1.3.16) (BSU1-like protein 1) (BSL1) [Arabidopsis Thaliana] (GB:Q8L7U5;GB:Q9ZTA4); similar to BSU1 (BRASSINOSTEROID INSENSITIVE 1 suppressor 1), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT1G03445.1); similar to kelch repeat-containing protein / serine/threonine phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT1G08420.1); similar to kelch repeat-containing serine/threonine phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT2G27210.1); similar to kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97885.1); similar to Os05g0144400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054625.1); similar to DNA topoisomerase II; Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase [Medicago truncatula] (GB:ABE78157.1); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Kelch repeat; (InterPro:IPR006652); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0528986218867729 0.69305523283704 0.506983401291122 1 1.01613427241249 17.0865469246842 0.0528986218867729 0.051181078074661
AT1G74230_at 8.37910826831412 8.4790568392935 8.57994649322947 8.46638092312597 8.56676167702943 7.9081200341739 8.4827147985477 8.40217261662436 8.14752034246225 8.26953692268092 7.93271540525206 8.0462433231434 8.16982654327856 8.17996161106762 7.83096560115618 8.05123535144233 8.03856194043219 7.87205986464847 7.90116994387922 0.145872868443136 0.149564062329811 0.155879218787297 0.157904195605177 0.144796342142433 0.152164264207053 0.143282452344219 0.148032866292676 0.140460901252750 0.140460901252750 0.155188946596546 0.142950506367771 0.145136730297216 0.141425046402064 0.154807145260816 0.140460901252750 0.156726802197199 0.146019690214835 0.153016521356479 1 0|1 /|+ 27920022 27920342 27920172.3 27918364 27920744 + gene protein_coding_gene FALSE TRUE AT1G74230.1 GR-RBP5 (glycine-rich RNA-binding protein 5); RNA binding encodes a glycine-rich RNA binding protein. similar to GR-RBP3 (glycine-rich RNA-binding protein 3), RNA binding [Arabidopsis thaliana] (TAIR:AT5G61030.1); similar to unknown [Brassica rapa] (GB:ABB97027.1); contains InterPro domain Eggshell protein; (InterPro:IPR002952); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0731701900467088 -0.691879383531356 0.507684983386249 1 1.01532864163817 16.468668676989 -0.0731701900467088 0.117776726351960
AT4G30220_at 7.77738004347592 7.97693722718813 7.95621562837352 8.00016703745601 8.09246085482248 7.73014874675228 8.26473477016716 7.8499126816413 7.06340946967946 7.89640504570403 7.84147754664912 8.02629867280068 7.85999162808281 7.41538065892971 7.78978317189557 7.9941709463987 7.92022923982971 7.07625106458289 7.78950602831996 0.156999327308957 0.159916589173916 0.153202572395575 0.155301862756545 0.157280032054467 0.165856386843458 0.161852277348439 0.168298048602026 0.161469496731581 0.159851825675046 0.164287080578890 0.164658668486406 0.160639037443174 0.166517762137513 0.170952122401471 0.153202572395575 0.167613242257341 0.168263792210339 0.160766072841026 4 4|0 -|/ 14803134 14803835 14803551.571 14802956 14804329 - gene protein_coding_gene FALSE TRUE AT4G30220.1 small nuclear ribonucleoprotein F, putative / snRNP-F, putative / Sm protein F, putative Identical to Probable small nuclear ribonucleoprotein F (snRNP-F) (Sm protein F) (Sm-F) (SmF) [Arabidopsis Thaliana] (GB:Q9SUM2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G14285.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE82177.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.0674239522389712 0.691748484992449 0.507763122694531 1 1.01523903166232 15.6177719807582 0.0674239522389712 0.101661657802917
AT2G22100_at 5.03480955749465 5.10470325860018 5.15055259384836 5.25089713421949 4.86181255365718 4.9429701580779 4.6156603013301 5.07323468033279 4.90667665241207 4.73684068126164 4.69166017108891 4.90532575272786 4.86883866786584 4.96463369332469 5.22873587847235 4.9170664509385 5.06272989657218 5.03159616642346 5.14818518047857 0.193499480246700 0.195677109037079 0.191426000898587 0.189003909697795 0.199194601951279 0.190767464192510 0.188965055443886 0.201997249853497 0.197209084166977 0.198446977238316 0.194390372643974 0.189636687947123 0.198657029527136 0.200115268995786 0.189998452525746 0.190017540203290 0.191792877526253 0.191595250469684 0.194493680046491 2 2 - 9399479 9399955 9399735.364 9399290 9400642 - gene protein_coding_gene FALSE TRUE AT2G22100.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G19380.1); similar to RNA-binding re (GB:ABD28657.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.061355995235298 0.691551962517722 0.507880449989476 1 1.01510452530673 9.94902544939216 0.061355995235298 0.0831590279832021
AT1G74940_at 9.5926925286752 9.82737389363691 9.5480804921059 9.80185094344834 10.1825362745514 10.1581412609823 9.05514579146442 9.50660338037875 9.7280056123479 9.1895773842 9.17007029333614 8.76478994064366 9.2279355334721 9.38522678911521 8.56001781719466 9.45841205477148 9.18353657359947 8.99158720118378 9.24473048538074 0.129265540184615 0.128311284898114 0.126155942481472 0.127167411369942 0.129709962170448 0.133520717823286 0.132482064767776 0.128800345439641 0.129936935959136 0.132492106955230 0.131063649286572 0.131846710972052 0.133304977613697 0.125380192698539 0.136696117355356 0.125199775008166 0.130287997499245 0.128941258753526 0.130318418480810 1 1 + 28150028 28150696 28150308.727 28149720 28151039 + gene protein_coding_gene FALSE TRUE AT1G74940.1 senescence-associated protein-related similar to senescence-associated protein-related [Arabidopsis thaliana] (TAIR:AT1G19200.1); similar to Protein of unknown function DUF581 [Medicago truncatula] (GB:ABE90961.1); contains InterPro domain Protein of unknown function DUF581; (InterPro:IPR007650) 0.0662287711691005 0.690574142071758 0.508464476562203 1 1.01443577629732 18.9491204970175 0.0662287711691005 0.0984867845878662
AT4G30580_at 8.94904780634843 8.87380825443073 8.91933472744674 8.43199026051707 9.42303401448276 8.9559690019802 9.3078000915477 8.98847962644995 9.06872627733634 9.16548051091647 9.10226501820172 9.29737161432471 8.91420971875323 9.20564642787374 9.43198289717613 9.22627743535498 8.77336922175498 8.77013498997396 9.20982788583491 0.107578163099036 0.108645672714647 0.107556546561364 0.105919272460120 0.105815076429253 0.117988615123133 0.107225255074198 0.112474396469586 0.112726839180019 0.104084990311002 0.107428298903108 0.111584190263041 0.109508705580611 0.112210391605038 0.104604334579934 0.108260353659910 0.117349251680907 0.116181781774703 0.104084990311002 4 4 - 14932554 14933252 14932994.909 14932340 14934534 - gene protein_coding_gene FALSE TRUE AT4G30580.1 ATS2 (EMBRYO DEFECTIVE 1995); 1-acylglycerol-3-phosphate O-acyltransferase/ acyltransferase Encodes a plastidic lysophosphatidic acid acyltransferase (LPAAT). Is critical for chloroplasts phosphatidic acid biosynthesis. The null allele is embryo lethal. Identical to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 1) (LPAT1) [Arabidopsis Thaliana] (GB:Q8GXU8;GB:Q9M0A2); similar to phospholipid/glycerol acyltransferase family protein [Arabidopsis thaliana] (TAIR:AT3G05510.2); similar to 1-acyl-sn-glycerol-3-phosphate acyltransferase 1, chloroplast precursor (GB:Q9LLY4); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123); contains InterPro domain 1-acyl-sn-glycerol-3-phosphate acyltransferase; (InterPro:IPR004552) -0.0775281680950346 -0.690350246048404 0.508598262587717 1 1.01428276766724 18.1002673346284 -0.0775281680950346 0.129881059440884
AT2G25300_at 5.63688019173757 6.14003327944327 5.62587420446533 5.32062676704812 6.03446911826087 5.03646741021874 5.4444957008439 4.71159051557683 4.37957768554183 4.64696548230188 4.47028813788524 4.99825462628519 4.7217642761706 4.86518129215454 4.88181535572802 5.0351039763478 4.52868924218734 4.57342006129179 4.58100505279227 0.212089808316302 0.203649246512270 0.201423247723171 0.208717626368382 0.207823669263788 0.220475263596178 0.206301378176204 0.203694645142766 0.207018762132325 0.203283750833121 0.199711454054908 0.201108437353056 0.20569664438102 0.210170733517591 0.199711454054908 0.199711454054908 0.229331919562880 0.207031169651025 0.215882498985104 2 2|0 -|/ 10779358 10780524 10779771.125 10778773 10781373 - gene protein_coding_gene FALSE TRUE AT2G25300.1 transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT4G32120.1); similar to Os06g0176200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056954.1); similar to beta 1,3-glycosyltransferase-like protein II [Oryza sativa] (GB:CAD44838.2); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.122287333612765 0.690283322311948 0.508638256208279 1 1.01423704108706 10.1413866623918 0.122287333612765 0.237248820833613
AT2G44620_at 9.46722814849281 9.6623472454418 9.37323358733732 9.45687893276327 9.62544536914263 9.14288863041387 9.98179864600747 9.94230231759436 9.2172779564223 9.26785789220833 10.0860715231023 10.0766065184711 9.6180458198755 9.82117651628628 9.83882185929964 9.57771829894658 9.31045647302197 9.23059868261359 9.12506645925243 0.134184809863408 0.126101723212472 0.134055669092896 0.134166785620879 0.128922390492247 0.152398165664427 0.128669424511382 0.128308319076457 0.132558560068473 0.139918940846372 0.128579616535110 0.125706876303192 0.13244600444978 0.140402760578263 0.136713855391635 0.130412592237051 0.140306807610646 0.136151074901296 0.135135453191231 2 2|0 +|/ 18421412 18422115 18421707.1 18421327 18422310 + gene protein_coding_gene FALSE TRUE AT2G44620.1 mtACP-1 (MITOCHONDRIAL ACYL CARRIER PROTEIN 1); acyl carrier Encodes mitochondrial acyl carrier protein. Identical to Acyl carrier protein, mitochondrial precursor (ACP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) (MtACP-1) [Arabidopsis Thaliana] (GB:P53665); similar to acyl carrier family protein / ACP family protein [Arabidopsis thaliana] (TAIR:AT1G65290.1); similar to Os07g0222800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059204.1); similar to unknown [Solanum tuberosum] (GB:ABA46780.1); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) 0.0638643663439684 0.690097194373552 0.508749496539874 1 1.01410988721017 19.0306842250224 0.0638643663439684 0.0914883185898824
AT4G30360_at 5.22201270726692 5.85871575872459 5.03194437565875 5.26782596915697 5.82683503132064 5.51295459005612 4.64389508779218 4.85260564017416 5.1936218126134 4.65258945487190 4.59201462165861 4.91174028955594 5.03283675514164 5.03572248088427 4.02974198578486 4.9859908797601 4.29836812728785 4.53743915639672 4.50917644892694 0.207954525873386 0.196351959405695 0.212857358095162 0.199261251895643 0.207698558313303 0.209454590670435 0.200861750154500 0.196266348809772 0.207610359631041 0.209843790407893 0.20514998803135 0.194876090579079 0.197154149364739 0.199765501392258 0.207839373441128 0.196216106679845 0.220277358335146 0.201628783225138 0.198457481613011 4 4 - 14855083 14855633 14855377.636 14854817 14858009 - gene protein_coding_gene FALSE TRUE AT4G30360.1 ATCNGC17 (cyclic nucleotide gated channel 17); calmodulin binding / cyclic nucleotide binding / ion channel member of Cyclic nucleotide gated channel family Identical to Probable cyclic nucleotide-gated ion channel 17 (Cyclic nucleotide- and calmodulin-regulated ion channel 17) (CNGC17) [Arabidopsis Thaliana] (GB:Q8L7Z0;GB:Q9M0C4); similar to ATCNGC16 (cyclic nucleotide gated channel 16), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT3G48010.1); similar to ATCNGC14 (cyclic nucleotide gated channel 14), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT2G24610.1); similar to ATCNGC18 (cyclic nucleotide-gated ion channel 18), calmodulin binding / cyclic nucleotide binding / ion channel [Arabidopsis thaliana] (TAIR:AT5G14870.1); similar to putative cyclic nucleotide and calmodulin-regulated ion channel [Oryza sativa (japonica cultivar-group)] (GB:BAD36523.1); similar to Cyclic nucleotide-binding; Ion transport protein [Medicago truncatula] (GB:ABE89042.1); similar to cation channel family protein, putative [Medicago truncatula] (GB:ABE88729.1); contains InterPro domain Cyclic nucleotide-binding; (InterPro:IPR000595); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain EAG/ELK/ERG potassium channel; (InterPro:IPR003938); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.0792176206566675 0.690024759829409 0.50879279151292 1 1.01406041153650 10.0086541579502 0.0792176206566675 0.134394738585784
AT3G12290_at 10.6967347264103 10.8053460310466 10.8089097198114 10.7827002780461 10.7117746804842 10.4943027561125 10.6703436303061 10.5284462571936 10.5578977341966 10.5045396626886 10.6451237830948 10.522720213614 10.4352215887624 10.5350602925381 10.5044194008670 10.4764815953445 10.5495662275235 10.5259580792845 10.2709088369161 0.0891265159908746 0.0839447474254972 0.088429502715136 0.0853959542597039 0.0831369135168558 0.0910974179034811 0.0870706158565826 0.0854427182464775 0.0934040974286962 0.0856251968032666 0.0893634557062024 0.0848880243614513 0.0874326413189504 0.0869805296337584 0.0926006031104954 0.0851041267472306 0.0923261264202947 0.088560614459658 0.0859323293421417 3 3 + 3920519 3921304 3920957.455 3919509 3921526 + gene protein_coding_gene FALSE TRUE AT3G12290.1 tetrahydrofolate dehydrogenase/cyclohydrolase, putative similar to tetrahydrofolate dehydrogenase/cyclohydrolase, putative [Arabidopsis thaliana] (TAIR:AT4G00620.1); similar to 5,10-methylenetetrahydrofolate dehydrogenase-5,10-methenyltetrahydrofolate cyclohydrolase [Pisum sativum] (GB:AAD01907.1); contains InterPro domain Tetrahydrofolate dehydrogenase/cyclohydrolase; (InterPro:IPR000672) 0.0520371752012827 0.688163769858425 0.509905912495686 1 1.01279085908440 21.1717035810409 0.0520371752012827 0.0489203994777482
AT4G13010_at 11.0513987881069 11.2968672581152 11.5127252070724 11.4818542362104 11.4210703250947 11.4481674804580 11.7919355553992 11.8594021439228 11.4125115439433 11.2721526240479 11.2571969382044 11.0603397865608 11.2841273642480 11.3138144545007 11.0970558374925 11.3320117666750 11.2456696609853 11.1256193335340 11.1632207624313 0.0639610460308786 0.0651480460050406 0.066273165158342 0.0688124514867974 0.0654975994624154 0.0665627648936251 0.0633430207970311 0.067572758106686 0.0696273388079428 0.0651358041950999 0.0652907968182329 0.0640152666629494 0.0647696218640146 0.0674052713873254 0.0660059830264115 0.063128426973683 0.0720543033121103 0.0679528288730003 0.0655066579638983 4 4 + 7601965 7602392 7602137.545 7600548 7602726 + gene protein_coding_gene FALSE TRUE AT4G13010.1 oxidoreductase, zinc-binding dehydrogenase family protein Identical to Putative chloroplastic quinone-oxidoreductase homolog (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9SV68); similar to oxidoreductase, zinc-binding dehydrogenase family protein [Arabidopsis thaliana] (TAIR:AT1G23740.1); similar to ripening regulated protein-like [Solanum tuberosum] (GB:ABA81857.1); contains InterPro domain GroES-like; (InterPro:IPR011032); contains InterPro domain Alcohol dehydrogenase superfamily, zinc-containing; (InterPro:IPR002085); contains InterPro domain Alcohol dehydrogenase, zinc-binding; (InterPro:IPR013149); contains InterPro domain Alcohol dehydrogenase GroES-like; (InterPro:IPR013154) -0.0510477707714481 -0.686668334044291 0.510801478304025 1 1.01177288693487 22.7314814757554 -0.0510477707714481 0.0446245478667685
AT1G26470_at 7.63337595745095 7.59297867776713 7.25064153868497 7.09030506706260 7.13796253417844 7.31527710118593 6.94590180583407 7.15074884887408 5.37768663778487 5.07169851751087 5.44075745837595 5.9632526640766 5.55657570435296 5.66558801748637 5.79309198827473 5.47779097763271 5.97090749068991 5.26251539529336 5.75857010915529 0.232891892851193 0.236352258799219 0.231188390177164 0.24174068296687 0.229800865367053 0.229800865367053 0.229800865367053 0.229981640689236 0.247052446921015 0.233532475380276 0.233717838057170 0.230878733500582 0.234074984230039 0.242651747773959 0.243860023418903 0.234678128801968 0.2385198336489 0.236134744854134 0.229800865367053 1 1|0 +|/ 9155175 9155984 9155618.889 9155078 9156233 + gene protein_coding_gene FALSE TRUE AT1G26470.1 similar to Os05g0512500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056022.1); contains InterPro domain CT20; (InterPro:IPR012423) 0.0532267225011227 0.686292118944205 0.511026934293898 1 1.01151709915950 12.7866297997997 0.0532267225011227 0.0549274769752003
AT1G17440_at 8.72904385999259 8.82407073771524 8.42716901121362 8.5765212596894 8.17942681605195 8.09376202318488 7.7566012469942 8.14352297782814 8.33723650840318 7.55511402061328 8.133075985673 8.14658983666406 7.98910557607248 8.45164810804252 7.66970920978424 8.39475114402379 7.81276647697305 7.95135845031602 7.83073660643425 0.196899784574831 0.201282373443000 0.203760892649333 0.199863080951069 0.202422173434951 0.220219542430859 0.207179257320264 0.201315295976804 0.205351581570472 0.210303284118186 0.210698923456004 0.202116423338193 0.197369200854979 0.212228484671173 0.212964753683587 0.202875593672979 0.210138152855649 0.210182617193019 0.206888264564852 1 1|0 -|/ 5984414 5985443 5984807.444 5983977 5987777 - gene protein_coding_gene FALSE TRUE AT1G17440.1|AT1G17440.2 transcription initiation factor IID (TFIID) subunit A family protein similar to TAFII58 (tata-associated factor II 58) [Arabidopsis thaliana] (TAIR:AT3G10070.1); similar to Histone-fold [Medicago truncatula] (GB:ABE92437.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription initiation factor TFIID; (InterPro:IPR003228); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0584199792645816 0.685397952180998 0.511563032865925 1 1.01090965618935 16.3294253967140 0.0584199792645816 0.0751111237122935
AT4G18020_at 5.16411925113741 4.47797372956728 4.47953384254668 3.76275964894359 4.98540346797836 4.56301841695684 4.70960421240673 4.8216790098766 4.59849614117392 4.74619235254998 4.73319044521401 5.63363001188547 5.44182240523045 5.48965791833714 4.65895692678831 5.24466014512081 5.26707272525844 4.94712682407385 4.54896007662184 0.210245931668643 0.209812666193505 0.204067507884603 0.204588614770288 0.210295802838067 0.215756427533101 0.211130336420121 0.204067507884603 0.215438251750071 0.207192318092791 0.213004387231443 0.204067507884603 0.208230818732117 0.205262211779346 0.211029618978158 0.206842676481643 0.215904016727838 0.213735574747085 0.210459789010456 4 0|4 /|- 10003758 10004601 10004180.667 10003303 10007503 - gene protein_coding_gene FALSE TRUE AT4G18020.1|AT4G18020.2|AT4G18020.3|AT4G18020.4 APRR2 (PSEUDO-RESPONSE REGULATOR 2); transcription factor|APRR2 (PSEUDO-RESPONSE REGULATOR 2) Encodes pseudo-response regulator 2 (APRR2). Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O49701;GB:Q94F45); similar to GPRI1 (GOLDEN2-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G20570.1); similar to Response regulator, RegA/PrrA/ActR type [Medicago truncatula] (GB:ABE93062.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789)|Identical to Two-component response regulator-like APRR2 (Pseudo-response regulator 2) (TOC2 protein) (APRR2) [Arabidopsis Thaliana] (GB:Q6LA43;GB:O49701;GB:Q94F45); similar to GPRI1 (GOLDEN2-LIKE 1), transcription factor [Arabidopsis thaliana] (TAIR:AT2G20570.1); similar to Response regulator, RegA/PrrA/ActR type [Medicago truncatula] (GB:ABE93062.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.100066639241340 0.684939730071922 0.511837895380181 1 1.01059863999730 9.5246268801036 0.100066639241340 0.187629152385869
AT3G15970_at 5.68344743031642 6.2305302323696 6.19189666652167 5.83511817453462 5.94451716475146 6.30490099933204 5.4410700467434 5.86990183166909 5.75604104532749 5.62820055724872 5.03691925167779 4.85494801848843 5.41581042149941 5.55990496458467 5.60404603954598 5.50410011820211 5.56808047164503 4.84867542750898 5.80683759757222 0.165203194860427 0.177191757394032 0.169280686627143 0.180137613047992 0.183286814589401 0.176157882461487 0.177421274485379 0.167326446111537 0.181533246531096 0.169720162620077 0.176191583732217 0.167384923564425 0.178012097036095 0.168666080601724 0.171642968835469 0.165048250856841 0.168946955195484 0.176382162596397 0.174866068690292 3 3 - 5409000 5409548 5409360 5408803 5411149 - gene protein_coding_gene FALSE TRUE AT3G15970.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein similar to Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G52380.1); similar to hypothetical protein DEHA0F08767g [Debaryomyces hansenii CBS767] (GB:XP_460702.1); similar to hypothetical protein DDBDRAFT_0205337 [Dictyostelium discoideum AX4] (GB:XP_642253.1); similar to Os05g0349500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055271.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.0842141391142204 -0.684476130119614 0.512116076832018 1 1.01028416144318 11.4523829795432 -0.0842141391142204 0.148903828594507
AT2G47060_at 6.70238783287724 6.98760427114879 6.66465058921309 6.46079063319902 7.06956403841755 7.37431596972966 7.72653663928065 7.29159579047672 7.8907201068723 7.92455708660768 8.5974844004933 8.61317866604062 7.80329580842401 8.68190253265033 8.44361897329426 8.603548071394 7.74325992199772 7.98680536594709 8.6759062433962 0.195993473976896 0.191570153290354 0.194679349874431 0.191969414464508 0.193100578980092 0.194716018483148 0.189315894819500 0.191506303565642 0.190762156203668 0.190502099919896 0.186373805745761 0.188458138261233 0.197796939882948 0.188810126820628 0.186376157217284 0.188922407927251 0.197378471518639 0.187513502284863 0.187877919779627 2 2|0 -|/ 19340196 19341026 19340570 19339974 19342044 - gene protein_coding_gene FALSE TRUE AT2G47060.1|AT2G47060.2|AT2G47060.3|AT2G47060.4 serine/threonine protein kinase, putative|kinase similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G62220.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82412.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to serine/threonine protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G62220.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82412.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0696459602839563 -0.684456528156993 0.512127840980031 1 1.01027086880451 15.2711129854539 -0.0696459602839563 0.110125137971866
AT4G22340_at 6.05467685680703 6.5652564706664 6.78788354976757 6.59852086334706 6.93482892603282 6.90435833100242 6.57558402846195 7.40409748745815 6.69811588137118 6.25239681953233 6.27199625214273 6.09781685493794 6.61630714565112 6.30213162710554 6.37407114676241 6.93218707212679 6.64660289984288 6.41466183700261 6.32998268720103 0.211899383198442 0.205105384798213 0.211123316818422 0.210848282358187 0.203757358768629 0.210899250334861 0.199179516743379 0.200909947490014 0.219998404082114 0.207588155662132 0.207852959259864 0.211998454728104 0.199754286358645 0.202078406280074 0.206030411341643 0.198442817820763 0.197555046884075 0.205009970746096 0.206550789215865 4 4|0 -|/ 11800193 11801219 11800745.25 11799971 11803457 - gene protein_coding_gene FALSE TRUE AT4G22340.1|AT4G22340.2|AT4G22340.3 phosphatidate cytidylyltransferase, putative / CDP-diglyceride synthetase, putative|phosphatidate cytidylyltransferase similar to ATCDS1 (CDP-diacylglycerol synthase 1), phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT1G62430.1); similar to Os01g0758400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044302.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); similar to Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase) (CDP-diglyceride pyrophosphorylase) (CDP-diacylglycerol synthase) (CDS) (CTP:phosphatidate cytidylyltransferase) (CDP-DAG synthase) (CDP-DG synthetase) (GB:O04940); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374)|similar to ATCDS1 (CDP-diacylglycerol synthase 1), phosphatidate cytidylyltransferase [Arabidopsis thaliana] (TAIR:AT1G62430.1); similar to Phosphatidate cytidylyltransferase [Medicago truncatula] (GB:ABD33020.1); contains InterPro domain Phosphatidate cytidylyltransferase; (InterPro:IPR000374) 0.0933171325503723 0.684031893468484 0.512382727204896 1 1.00998299508856 13.1700526394336 0.0933171325503723 0.171657035634163
AT4G09800_at 10.0677970585060 10.0610590355749 9.77644046756887 9.83750806724691 10.1784928556243 10.0774194159489 9.90099833668963 9.77187380908563 9.81799102184325 9.83468608510944 9.8349871106366 9.99100392792716 9.65185737752486 9.75046481949333 10.0851250538182 9.4390485595484 9.52287593024896 9.66782738503614 9.9177735769755 0.0785180043518206 0.077674133338202 0.0762164051825815 0.0772785034780116 0.0753714025003284 0.0792458490500703 0.0811600081881694 0.077775928522258 0.0821774985641693 0.0762340213670476 0.0780283090166063 0.0798657276112773 0.075117624391915 0.0757029979989695 0.0767290232269824 0.0762169664672875 0.0829120996988982 0.0800201393337722 0.0751838972914846 4 4|0 +|/ 6174210 6174880 6174662.7 6173712 6175197 + gene protein_coding_gene FALSE TRUE AT4G09800.1 RPS18C (S18 RIBOSOMAL PROTEIN); structural constituent of ribosome encodes a ribosomal protein S18C, a constituent of the small subunit of the ribosomal complex Identical to 40S ribosomal protein S18 (RPS18C) [Arabidopsis Thaliana] (GB:P34788;GB:Q94K22); similar to 40S ribosomal protein S18 (RPS18B) [Arabidopsis thaliana] (TAIR:AT1G34030.1); similar to PFL (POINTED FIRST LEAVES), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G22780.1); similar to Ribosomal protein S13 [Medicago truncatula] (GB:ABE81204.1); contains InterPro domain Ribosomal protein S13; (InterPro:IPR001892); contains InterPro domain Ribosomal protein S13-like, H2TH; (InterPro:IPR010979) -0.0484424912401624 -0.68401385254705 0.512393557974582 1 1.00997076807044 19.7588064633666 -0.0484424912401624 0.0303036636597718
AT1G11750_at 9.06423803020896 8.87403808353542 9.0825021325571 8.92875711942826 9.28968024346144 8.89675270015022 9.47845053839237 9.0847541707291 8.79491800108971 8.84344951962572 8.9322618970781 8.88936951402414 8.91707444708096 8.81940783670178 9.11184874130271 9.28110563837597 8.94446595126461 8.84682808961272 8.63011569259863 0.138570288932998 0.141031343733783 0.142701878501342 0.138090418374421 0.148269161326748 0.154366431832426 0.145161946981255 0.150886509280476 0.162171296774987 0.142703948602140 0.153065855931422 0.141505894748159 0.142491862396867 0.147541022269395 0.148566458744073 0.140558111482602 0.152166856800367 0.147746133499128 0.145967687297592 1 1 + 3968383 3969494 3968679.364 3967476 3969854 + gene protein_coding_gene FALSE TRUE AT1G11750.1 CLPP6 (Clp protease proteolytic subunit 6); endopeptidase Clp One of several nuclear-encoded ClpPs (caseinolytic protease). Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to CLPP5 (NUCLEAR ENCODED CLP PROTEASE 1), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G02560.1); similar to clp-like energy-dependent protease [Fritillaria agrestis] (GB:AAC04810.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.0678435182541173 0.683793015927318 0.512526147526750 1 1.00982112189704 17.9493747950753 0.0678435182541173 0.105151527311919
AT3G60340_at 8.51609916334657 8.94683533130643 8.47694507220524 8.74800721849771 9.41626531994889 9.02222647574382 8.58378468691632 8.52472759917598 8.6481979511958 8.43013670075306 8.56991693516077 8.61651678017543 8.3629476625659 8.59812289734578 8.1824936523906 8.54239070271933 7.90674786128633 8.39878017279485 8.51154532504455 0.213286334535755 0.203411514353373 0.226602506058564 0.215206531959657 0.210719093907314 0.208773919653798 0.212845257787169 0.199756523635297 0.206855175036585 0.205456127933985 0.211321170869610 0.212430449027099 0.203822588650158 0.205862486381302 0.206683824918403 0.209843187475166 0.222847591316706 0.208752459054059 0.206521256926748 3 3|0 +|/ 22316583 22317338 22317001.889 22315127 22317487 + gene protein_coding_gene FALSE TRUE AT3G60340.1|AT3G60340.2 palmitoyl protein thioesterase family protein similar to palmitoyl protein thioesterase family protein [Arabidopsis thaliana] (TAIR:AT5G47330.1); similar to putative palmitoyl-protein thioesterase [Tropaeolum majus] (GB:AAR92492.1); contains InterPro domain Palmitoyl protein thioesterase; (InterPro:IPR002472) 0.0701394585681672 0.683305062890634 0.512819188123497 1 1.00949062093593 17.2429611460856 0.0701394585681672 0.111853127107686
AT2G43460_at 10.0519398249253 10.2159231932812 9.80974047862894 9.84717841237939 9.74924134829245 9.95315433425668 10.1871318827833 10.2890674355023 9.7023008986717 9.7590252240517 10.1063143704795 10.3853321098282 9.93870294865666 10.1340372343047 10.5594185384721 9.82280053990721 9.7007302429706 9.76159679105759 9.96353519825924 0.117571828877886 0.120853067777501 0.118874484354435 0.119057134121339 0.116424785910907 0.118567317889264 0.114278019303619 0.115227566607482 0.135626943526439 0.121622854715475 0.116851263568386 0.110777903253180 0.113111749807292 0.118738371345595 0.120214633199585 0.113699459100695 0.122198728011172 0.115549904374335 0.113986048243293 2 2 - 18053823 18053959 18053892.455 18053081 18054478 - gene protein_coding_gene FALSE TRUE AT2G43460.1 60S ribosomal protein L38 (RPL38A) Identical to 60S ribosomal protein L38 (RPL38B) [Arabidopsis Thaliana] (GB:O22860;GB:Q1WW90); similar to 60S ribosomal protein L38 (RPL38B) [Arabidopsis thaliana] (TAIR:AT3G59540.1); similar to Ribosomal L38e protein [Medicago truncatula] (GB:ABE93319.1); similar to 60S ribosomal protein L38 (GB:P46291); contains InterPro domain Ribosomal L38e protein; (InterPro:IPR002675) -0.0516787253841313 -0.683124279216786 0.512927784210481 1 1.00936822548837 19.9426239657331 -0.0516787253841313 0.0490277963102487
AT1G02090_at 5.80463930950578 5.99953069617596 5.68760723331933 5.68442083272348 6.13391488691489 5.67049559854085 6.25451104721492 6.02635750432526 4.90644410134384 5.13693575306321 5.16096298602272 5.3942781776458 5.43105974166067 5.25422272280399 5.45125730120596 5.45727189106589 4.87246907725969 5.75649774554736 4.92979120194434 0.225558943979319 0.226174868696884 0.220281843279909 0.222448539522732 0.234381775042777 0.238043185906794 0.230055226521509 0.220825599981123 0.233266718973873 0.223181881514721 0.223566700322214 0.220281843279909 0.223137504810596 0.224227478383806 0.232070426419619 0.224725998045925 0.238589228080333 0.229716480851965 0.222555793165493 1 1|0 -|/ 388570 389232 388966.143 387277 389647 - gene protein_coding_gene FALSE TRUE AT1G02090.1|AT1G02090.2|AT1G02090.3 FUS5 (FUSCA 5); MAP kinase kinase encodes a phosphoprotein that is a subunit of the COP9 signalosome. Mutants exhibit constitutive photomorphogenic phenotype. Identical to COP9 signalosome complex subunit 7 (CSN complex subunit 7) (FUSCA protein 5) (FUSCA5) (CSN7) [Arabidopsis Thaliana] (GB:Q94JU3;GB:O81247); similar to putative COP9 complex subunit, FUS5 [Oryza sativa (japonica cultivar-group)] (GB:BAD30468.1); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.064522717593434 0.682963781491648 0.513024206518133 1 1.00925958827420 11.0768393756827 0.064522717593434 0.0955418925315459
AT3G02740_at 8.9320449587529 9.26604793918218 8.90260672105549 8.63309057505051 9.18073857850454 8.48718433032839 7.9228319764018 8.1477811729167 8.34831464167045 8.42364563202856 8.20865677288524 8.48948502536321 8.22176602323894 8.0618029468731 7.2685603493417 7.74859454592381 7.71334833807528 8.02077734581461 8.32697888232036 0.187970118526448 0.188655143390232 0.195425651065856 0.201093250527770 0.193006486918207 0.211284169427467 0.196037695986376 0.200796366961068 0.208605508369844 0.198503771829856 0.189684624558383 0.188448896618841 0.193960669659418 0.191264869750162 0.20210537744477 0.190757579052887 0.211240384188359 0.202346302866065 0.191915228258565 3 3|0 +|/ 592033 593065 592577.75 590455 593193 + gene protein_coding_gene FALSE TRUE AT3G02740.1 aspartyl protease family protein similar to aspartyl protease family protein [Arabidopsis thaliana] (TAIR:AT5G36260.1); similar to Os02g0473200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046837.1); similar to Eukaryotic aspartyl protease [Medicago truncatula] (GB:ABE89788.1); similar to OSJNBa0008A08.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE01597.2); contains InterPro domain Peptidase A1, pepsin; (InterPro:IPR001461); contains InterPro domain Peptidase aspartic, catalytic; (InterPro:IPR009007) -0.082980297072819 -0.682384868547315 0.513372093469016 1 1.0088679237703 16.8505092667470 -0.082980297072819 0.146414532367938
AT4G15130_at 7.20879358404001 7.44792332979107 6.72530908309514 6.72776166854396 7.547658279467 7.33545785215448 7.00626971308282 6.01274066780798 6.12695609978279 6.24552334891967 5.65052057148283 6.27376245523991 5.98145873863665 6.61665113447676 6.04562048680301 6.21013290050125 5.9855023676299 5.53885214434614 5.65571215337586 0.227749181768930 0.219600869589558 0.241844758459984 0.222949408932725 0.223882775287102 0.223609387381890 0.222350019971889 0.234064858448922 0.220763757984668 0.225992886025917 0.225089937577394 0.222368592309301 0.225113821768554 0.225827200496138 0.223900473736868 0.225139917832996 0.217036901445181 0.226295097903856 0.224749842498214 4 4|0 +|/ 8638290 8639336 8638972.9 8637663 8639580 + gene protein_coding_gene FALSE TRUE AT4G15130.1 cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative similar to cholinephosphate cytidylyltransferase, putative / phosphorylcholine transferase, putative / CTP:phosphocholine cytidylyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G32260.1); similar to CTP:phosphocholine cytidylyltransferase [Brassica napus] (GB:BAA09644.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) 0.0967651481657328 0.682285657482136 0.513431727140711 1 1.00880083196631 13.0250941725390 0.0967651481657328 0.180617844507913
AT2G38820_at 7.02733157598695 6.79039738739023 7.45000944477688 7.19899643710918 7.8453392411766 7.85472747953826 7.25827253892307 7.24349568596072 7.4768204259532 7.7056162084395 6.55489813170961 6.71100310213724 7.00773263035278 6.92179941814643 6.8571308018106 6.86411042605125 7.3032368764268 7.35239788366673 7.50347435326822 0.166575650541067 0.165527334852772 0.166595950602956 0.165715844970722 0.169805437687792 0.170119094712864 0.163438281539864 0.167270983798329 0.16828166195665 0.167937320390858 0.162478675186328 0.170829076630883 0.166110152481764 0.169354702393304 0.161942743359958 0.167560967912944 0.174194910072642 0.168436231395326 0.170426634580950 2 2 + 16229626 16230444 16230155.364 16228914 16230740 + gene protein_coding_gene FALSE TRUE AT2G38820.1|AT2G38820.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G22970.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44687.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76408.1); similar to Os03g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051556.1); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) -0.054018908423817 -0.681553152611128 0.513872152763428 1 1.00830574133323 14.5878257178617 -0.054018908423817 0.0598108148642549
AT1G04790_at 5.30155279357055 5.14997661008666 4.80642215123456 5.41307785147696 6.29447562782276 5.34183895395793 5.60860385090153 4.85566074275054 4.81919523838784 4.32824653731316 4.44776494433006 4.46892303488036 4.43533666279459 4.90721576222666 4.48098586540812 4.52989577150563 4.84888403973255 4.68339538557485 4.63672104165385 0.226469531782738 0.228730460537302 0.229666969259183 0.224452042794062 0.220632646744150 0.241261978856234 0.238170657664192 0.227172862178299 0.224055241226204 0.224488158125790 0.234147861763874 0.226971366404592 0.22995992529838 0.226983409230292 0.233120425144361 0.220007799502478 0.238302984048956 0.222845918695224 0.233038164044966 1 1|0 +|/ 1347005 1348116 1347525.222 1345035 1348450 + gene protein_coding_gene FALSE TRUE AT1G04790.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G55530.1); similar to hypothetical protein DDBDRAFT_0204786 [Dictyostelium discoideum AX4] (GB:XP_640074.1); similar to Os04g0511600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053293.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.120292195492025 0.681199414996 0.514084924432809 1 1.00806682378404 9.94396163393763 0.120292195492025 0.236360390860542
AT1G50500_at 6.95676312645516 6.4551882431443 6.27528915047222 6.03989225788044 6.50583203114119 6.43685806775739 5.92695989505615 5.42744321924089 6.11794191202316 5.55132420642337 5.83384860344106 6.23419487969683 6.17311134678571 5.63652794445857 5.43582059247794 5.55856914908601 5.84882001855287 5.83969417153747 5.70152819830168 0.216011956742027 0.210273670105887 0.220501757074411 0.209812247351536 0.213451389585219 0.213937734071788 0.214307884090690 0.210243368443451 0.215121921446791 0.208640486259886 0.225168241908372 0.210277133339470 0.214644877385454 0.20983451322689 0.216129152338672 0.212823954542520 0.214695062858222 0.210282688896543 0.209444070641895 1 1 - 18711930 18713144 18712349.545 18711655 18719645 - gene protein_coding_gene FALSE TRUE AT1G50500.1 HIT1 (HEAT-INTOLERANT 1); transporter encodes a member of VPS53 family protein involved in the retrograde trafficking of vesicles to the late Golgi. Mutants in this gene are more sensitive to heat and osmotic stress. similar to membrane trafficking VPS53 family protein [Arabidopsis thaliana] (TAIR:AT1G50970.1); similar to vacuolar sorting protein 53 long isoform-like [Oryza sativa (japonica cultivar-group)] (GB:BAD82733.1); similar to Os01g0906200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045132.1); contains InterPro domain Vps53-like, N-terminal; (InterPro:IPR007234) 0.0763439109219193 0.68058184348966 0.514456521397004 1 1.00764997462297 12.0581973041454 0.0763439109219193 0.129648250516508
AT3G21650_at 7.26509949807582 7.84309716297435 7.33876067203957 7.49267419702065 7.65344387700009 7.90229274224308 7.45281840603032 7.57457175919976 7.38057218277957 7.10900177693266 6.99868772478955 7.32537113876974 6.9143728761404 7.17596845435196 6.64386619652945 7.00828025866013 7.20466950729025 6.88231765871081 7.1805011023267 0.159640545114548 0.154073411956409 0.160664207182263 0.154010797509913 0.15672480538919 0.163008039544691 0.158651355010934 0.15460601130443 0.171373059548168 0.150089275734418 0.156334945880099 0.157666380573023 0.150257894782223 0.151369280631017 0.163455985448177 0.152132968167064 0.164610829386027 0.161262483374575 0.157447261841264 3 3 - 7621692 7622339 7621966.364 7621576 7624083 - gene protein_coding_gene FALSE TRUE AT3G21650.1 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) [Arabidopsis thaliana] (TAIR:AT4G15415.1); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os03g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051871.1); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) -0.0706352308009524 -0.680460707884448 0.514529428950608 1 1.00756824977934 14.6866198297821 -0.0706352308009524 0.114074440827274
AT2G18710_at 9.3357597339965 9.54300118629788 8.72810329981694 9.01853632092526 9.7661521939897 9.19039526152048 9.53222886057621 9.25245212139961 9.03052281364768 9.19689073574792 9.215501168402 9.56168906259586 9.15895681333854 9.1063383043813 9.70189944690116 9.44115165778238 9.16074942885139 9.27349739950083 9.48626713421758 0.171654951209836 0.161160921670598 0.176321894712484 0.167055020869595 0.159817335593735 0.174247378799384 0.160489837750111 0.169614925639624 0.177509322145142 0.162287634765856 0.167037803233797 0.160977890444024 0.168485247231208 0.175736545446559 0.165083022140919 0.157866880418314 0.168918390725753 0.167532194003093 0.157866880418314 2 2|0 -|/ 8119417 8120075 8119787.556 8119166 8121567 - gene protein_coding_gene FALSE TRUE AT2G18710.1 SCY1 (SECY HOMOLOG 1); protein translocase Identical to Preprotein translocase secY subunit, chloroplast precursor (CpSecY) (SECY) [Arabidopsis Thaliana] (GB:Q38885;GB:Q9SLG1); similar to EMB2289/SCY2 (EMBRYO DEFECTIVE 2289, SECY HOMOLOG 2), protein translocase [Arabidopsis thaliana] (TAIR:AT2G31530.1); similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY) (GB:O63066); similar to SecY homolog; targetted to the thylakoid membrane; the protein has a chloroplast targetting signal, but the processing site is not known (GB:AAB60305.1); similar to Preprotein translocase secY subunit, chloroplast precursor (CpSecY) (GB:P93690); contains InterPro domain SecY protein; (InterPro:IPR002208) -0.075242178744835 -0.680149946615436 0.51471649513055 1 1.00735865200094 18.5785118580271 -0.075242178744835 0.126823382627002
AT1G33990_at 10.3365400000737 10.4493988326276 10.6005155898991 10.4850438954675 10.8180223875736 10.6425334645752 10.3507056231770 10.3911998099234 10.3471479667375 10.4884277245759 10.4632758593714 10.395437774781 10.3409921788149 10.2256083993746 10.1038394028421 10.1849566924563 10.0382754541142 10.2411197944386 10.3761537742980 0.101622399022382 0.0955568330076102 0.0964997452977618 0.0996596707456733 0.0955568330076102 0.105782071849516 0.0955568330076102 0.0977804219482837 0.109327866884154 0.096754712487803 0.096342639544582 0.0973952405454557 0.0983236357747368 0.103982065129992 0.0999350737083946 0.09976850889313 0.110378157258114 0.0993738483888204 0.0964392044579176 1 1|0 +|/ 12356997 12357830 12357458.8 12355548 12358011 + gene protein_coding_gene FALSE TRUE AT1G33990.1 hydrolase, alpha/beta fold family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT4G09900.1); similar to Os08g0110000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060815.1); similar to Os07g0603600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060214.1); similar to Avr9/Cf-9 rapidly elicited protein 246 [Nicotiana tabacum] (GB:AAV92904.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.0499230702910554 0.678568857820589 0.515668898374465 1 1.00629358020436 20.8357939586119 0.0499230702910554 0.0418588323854627
AT4G05180_at 13.7534566150537 13.9110772461182 13.8388924040885 13.7472475190606 13.9591965579866 13.7612447127521 14.1057188047380 14.1205654873117 14.512558675061 14.3375444846339 14.7359855446144 14.7390198101725 14.7139281519207 14.6720027027276 14.6315544251212 14.5793195156894 14.3597164870159 14.7008708863532 14.3313103765202 0.0571018178812126 0.0546653986323433 0.0577507852419577 0.0562747771718452 0.0556407674135514 0.0616446837032303 0.0556588429569805 0.055285910349479 0.05918624803469 0.0544816540353139 0.0540001903281874 0.0542752344751282 0.0548342085535044 0.0541023661588119 0.0578804510204043 0.0540512668040978 0.0583324568081476 0.0558639811124969 0.0548125340407608 4 4|0 -|/ 2672360 2673021 2672720.333 2671820 2673241 - gene protein_coding_gene FALSE TRUE AT4G05180.1 PSBQ/PSBQ-2 (photosystem II subunit Q-2); calcium ion binding Encodes the PsbQ subunit of the oxygen evolving complex of photosystem II. Identical to Oxygen-evolving enhancer protein 3-2, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (PSBQ2) [Arabidopsis Thaliana] (GB:Q41932;GB:Q9M0X7); similar to PSBQ/PSBQ-1/PSBQA, calcium ion binding [Arabidopsis thaliana] (TAIR:AT4G21280.1); similar to Oxygen-evolving enhancer protein 3, chloroplast precursor (OEE3) (16 kDa subunit of oxygen evolving system of photosystem II) (OEC 16 kDa subunit) (GB:P12301); contains InterPro domain Photosystem II oxygen evolving complex protein PsbQ; (InterPro:IPR008797) 0.0508429692733658 0.678546062682517 0.515682637456105 1 1.00627824078998 28.4173520196505 0.0508429692733658 0.0466440605866905
AT3G23310_at 7.63408972468193 7.4486425375991 6.92189729990576 7.1387485743244 8.10978072411294 7.82391047742068 8.10478985466893 7.83635715775908 7.8686971711867 7.97974944341988 8.44247998749153 8.05129410459587 8.18153365178876 7.9098423698196 8.0969602676625 8.24623510348773 8.0823964570935 7.79331119350566 8.04345757854526 0.161133074838761 0.149559686411107 0.155742538680586 0.155536391358574 0.150723352308463 0.155512851502316 0.153376225101075 0.150972300665361 0.150318660345330 0.164149563808643 0.159415824945445 0.153391958120769 0.159473451252468 0.154734155525784 0.150633989358722 0.145782701975409 0.151779759358427 0.153591107954912 0.159971245299325 3 3 + 8342266 8343310 8342872.636 8338907 8343639 + gene protein_coding_gene FALSE TRUE AT3G23310.1 protein kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT2G20470.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G14350.2); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT1G03920.1); similar to Serine/threonine protein kinase, active site [Medicago truncatula] (GB:ABE90852.1); similar to protein kinase MK6 [Mesembryanthemum crystallinum] (GB:CAB82852.1); similar to Ser/Thr protein kinase [Lotus japonicus] (GB:BAD95893.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase, C-terminal; (InterPro:IPR000961); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0604234860948087 -0.678417350767507 0.5157602189095 1 1.00619163594571 15.6595143969664 -0.0604234860948087 0.0839258107859333
AT4G29330_at 6.50286580302904 6.96252915454546 6.90856340537217 6.2503666008198 7.48062729230107 6.0466689690999 6.54213317354054 5.94330018649807 6.05543693935 5.8781000481759 6.40129256856392 6.56219917486027 6.36170144231712 6.48751959723109 5.82717189612926 5.95413577895689 5.06679728326696 5.27187506076305 5.69935713135041 0.260369297243947 0.251220553924754 0.250220774701126 0.256053670148533 0.255815919441366 0.254328457309133 0.249917354090247 0.256108161866557 0.258529990290676 0.255268570406151 0.247840087327047 0.248898169726733 0.253428008122372 0.253254663251675 0.255439951283296 0.254724170611592 0.275646619158411 0.269505933710851 0.247840087327047 4 4|0 +|/ 14446031 14446929 14446485.5 14444825 14447121 + gene protein_coding_gene FALSE TRUE AT4G29330.1 Der1-like family protein / degradation in the ER-like family protein Identical to Derlin-1 (AtDerlin1-1) (DER1) [Arabidopsis Thaliana] (GB:Q8VZU9;GB:Q9M0E8); similar to Der1-like family protein / degradation in the ER-like family protein [Arabidopsis thaliana] (TAIR:AT4G04860.1); similar to Derlin-1 (DER1-like protein 1) (OsDerlin 1-1) (18 kDa cold-induced protein) (GB:Q06397); contains InterPro domain Der1-like; (InterPro:IPR007599) 0.148902357398630 0.678152233182855 0.515920041896408 1 1.00601329549701 12.5142408097607 0.148902357398630 0.302689914415534
AT4G10790_at 8.84261468964244 8.92472275243826 8.78658391802266 8.78821494972167 9.1637462821284 8.89850178506249 8.4322805933512 8.60554269414583 9.0159179223779 8.61329630708998 8.68746433167502 8.79222070399526 8.44665695254685 8.92188918744875 8.21037291802394 8.94541085504142 8.82154412717053 8.55605542109983 8.69508298259324 0.139511899592058 0.136361782594916 0.138754137698288 0.136254841017041 0.132726617411933 0.136738341080298 0.135851043471650 0.138746302668893 0.139121468691071 0.140469385589345 0.150102749707699 0.137409454561484 0.133539040820795 0.134260296111922 0.139329165738525 0.137209116394533 0.135983219590637 0.14618477368814 0.137221221966075 4 4|0 -|/ 6640757 6641830 6641325.6 6640595 6643058 - gene protein_coding_gene FALSE TRUE AT4G10790.1 UBX domain-containing protein similar to UBX domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G23040.1); similar to Fas-associated factor 1-like protein [Capsicum annuum] (GB:AAW66458.1); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain UAS; (InterPro:IPR006577); contains InterPro domain UBA-like; (InterPro:IPR009060) 0.0529538130554357 0.677669778802363 0.516210962011637 1 1.00568891506388 17.5290097328036 0.0529538130554357 0.0566390738560944
AT4G19070_at 5.22743149046354 4.7026672126506 5.24375983606776 4.26188335080008 5.42515038058725 5.01985332456033 5.43781809749943 4.7776283525072 4.7596736531362 5.16726367664126 4.83108555384208 5.02145929214802 5.1748305455492 4.91774429475932 5.01599294429863 5.06644904105127 4.92938026675451 5.16821555127889 4.26035477082048 0.220134541769264 0.215220713241943 0.219293488129228 0.225635681850306 0.21856855710807 0.221303866931778 0.219500644821463 0.217011007717315 0.212009446749335 0.210489968503044 0.212022960077356 0.213207837853647 0.209849217309031 0.213716349326844 0.218934959233153 0.216378063462576 0.210476752517578 0.211157674167474 0.209525591924626 4 4|0 -|/ 10447147 10447680 10447503.889 10446351 10448201 - gene protein_coding_gene FALSE TRUE AT4G19070.1 cadmium-responsive protein / cadmium induced protein (AS8) Identical to Cadmium-induced protein AS8 [Arabidopsis Thaliana] (GB:P42735); similar to putative cadmium-induced protein [Oryza sativa (japonica cultivar-group)] (GB:BAC19956.1); similar to Os07g0143600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058878.1) 0.118911377033957 0.677399611740317 0.516373916909581 1 1.00550735668791 9.88439503218013 0.118911377033957 0.234715666862667
AT4G25050_at 10.8935202163542 11.0681880960197 10.8854171060273 10.6393935410954 11.2012255754283 10.8651698213061 11.8500000079042 11.6025668898494 12.0826958250410 11.7664916265229 12.4638113588943 12.5501396200210 12.0528623357496 12.105786102657 12.6066111126554 12.1012847753003 11.7638619186931 12.1501811180779 11.8278660311736 0.0888553664265797 0.0838487091514528 0.0873252029291986 0.0861320489628743 0.0856916265930184 0.089894096551157 0.0843442307599006 0.0872129853379871 0.090384676231993 0.0842745384534162 0.0820775815069519 0.0820775815069519 0.0820775815069519 0.0853704765234012 0.083555946071671 0.0823725717013344 0.0885094857127434 0.0820775815069519 0.0820775815069519 4 4|0 +|/ 12870203 12870977 12870574.222 12870077 12871231 + gene protein_coding_gene FALSE TRUE AT4G25050.1 ACP4 (ACYL CARRIER PROTEIN 4) encodes an acyl carrier protein predominantly expressed in leaves. Gene expression is upregulated by light. similar to ACP1 (ACYL CARRIER PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G05020.1); similar to acyl carrier protein [Olea europaea] (GB:AAL25091.1); contains InterPro domain Acyl carrier protein-like; (InterPro:IPR009081); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162); contains InterPro domain Acyl carrier protein (ACP); (InterPro:IPR003231); contains InterPro domain Phosphopantetheine-binding; (InterPro:IPR006163) -0.0619005798620145 -0.676984111841573 0.516624593024216 1 1.00522825706025 23.1840193835824 -0.0619005798620145 0.0891177887669958
AT1G12830_at 4.58736196666812 5.30130661426107 4.65466019853904 4.82427050836605 5.29951386415783 5.10615469648368 5.16001564605804 5.05933342053522 4.01026312783619 4.43056380671979 4.32196165413614 4.15795639614381 4.45803826470389 4.20433035256928 4.05426117862355 4.71968672559642 4.36150790833458 4.01719166864589 4.71419233029713 0.241740085154617 0.238851729223921 0.245998154760939 0.241848932793151 0.251886813901188 0.241146478960892 0.238920332442882 0.245911518759229 0.250102953803314 0.243274837058231 0.241513055338714 0.23750026467187 0.241081163967759 0.244303438174364 0.243288338038167 0.238584598456488 0.249932544957708 0.23853217096668 0.23750026467187 1 1 - 4374438 4374978 4374633.909 4374248 4375168 - gene protein_coding_gene FALSE TRUE AT1G12830.1 similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT3G50690.1); similar to hypothetical protein [Saimiriine herpesvirus 2] (GB:CAC84343.1); similar to orf 48 [Ateline herpesvirus 3] (GB:NP_048021.1); similar to Os04g0395700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052660.1) -0.0769971240087356 -0.676976773269477 0.516629021146126 1 1.00522332896326 9.33501370948958 -0.0769971240087356 0.132475497889688
AT4G21105_at 10.6642945929754 10.9684895190589 10.6728329549279 11.0652924056868 10.7490448154126 10.4737759721066 10.4695722137049 10.9581979233352 10.8964195210207 10.8343851582894 11.1524423181955 11.1902020636314 11.0248524902527 11.2544348115013 10.9103643070534 11.0995859369461 10.3201395729721 10.8484937015673 10.6642456524242 0.096908168490045 0.0924347963832597 0.100929099542508 0.095956163144424 0.0924347963832597 0.101751544036019 0.0973561733769692 0.0932289924562202 0.100411103338206 0.096735818627061 0.0929002018459488 0.0934639940645687 0.0924347963832597 0.0970782238257867 0.0936199040540923 0.0929813829861765 0.110804379291031 0.0988182336043996 0.0924347963832597 4 4|0 +|/ 11266288 11266701 11266417 11265662 11267060 + gene protein_coding_gene FALSE TRUE AT4G21105.1|AT4G21105.2 similar to hypothetical protein MtrDRAFT_AC137510g19v1 [Medicago truncatula] (GB:ABE81487.1)|similar to putative COX VIIa-like protein [Pinguicula sp. Jobson 240] (GB:AAT36216.1) 0.0759061322258674 0.676746835823888 0.516767778086982 1 1.00506894234392 21.6393948050726 0.0759061322258674 0.129627877139238
AT1G71090_at 8.88139744368724 9.28255684948692 9.23201167942386 9.38159724255242 9.23359529488082 9.14704097302983 9.26197080058723 9.49774503878852 8.60925749776217 9.14270113106077 8.86634595071694 8.8165662861385 9.19912620208798 8.93953639163015 8.9730360173906 9.13447381822542 9.16831424156569 9.13759672446714 9.02392147876175 0.113708202565949 0.106254806031148 0.112891609063366 0.111745731733118 0.110361736675183 0.119030813734115 0.109625359386640 0.110919014212784 0.119674041042692 0.107412060028051 0.113579783631608 0.108673231080562 0.106254806031148 0.110573842764089 0.110664470141823 0.108221625790600 0.120278574199660 0.113641931047352 0.108307393056364 1 1 + 26817105 26817550 26817350.818 26815874 26817792 + gene protein_coding_gene FALSE TRUE AT1G71090.1 auxin efflux carrier family protein similar to auxin efflux carrier family protein [Arabidopsis thaliana] (TAIR:AT5G01990.1); similar to Os01g0818000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044627.1); similar to Os08g0191000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061169.1); similar to auxin efflux carrier family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD73344.1); contains InterPro domain Auxin Efflux Carrier; (InterPro:IPR004776) 0.06086242458358 0.676571975260132 0.516873313937977 1 1.00495156716875 18.2170733269160 0.06086242458358 0.0858996097268134
AT3G59060_at 10.3007752427614 10.3601365261612 10.73528272991 10.7224374931056 10.9996022474857 10.9589625983854 11.0176038220406 11.0460669302001 11.2188001787037 11.1035995769455 11.2219846309238 11.1788619827985 11.1707559467785 11.1851695448583 10.7557730694603 11.2289180023940 11.0582916421872 10.9582093704594 11.2033257412343 0.0800913968461881 0.0780620032046277 0.0804583337877942 0.081764998090883 0.0767532522756541 0.0786821134273714 0.074846867952631 0.0789224325182357 0.0850579175065724 0.0788810538239284 0.074846867952631 0.0762262474363676 0.0771052211276334 0.0759370478938215 0.0781395079171679 0.075614893610411 0.0822495216912757 0.0773371084146744 0.0774702638576438 3 3|0 -|/ 21839179 21839993 21839509.1 21838955 21841484 - gene protein_coding_gene FALSE TRUE AT3G59060.1|AT3G59060.2|AT3G59060.3|AT3G59060.4 PIL6 (PHYTOCHROME-INTERACTING FACTOR 5); DNA binding / transcription factor encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. similar to PIF4 (PHYTOCHROME INTERACTING FACTOR 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G43010.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99197.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0462146641844186 0.676562321808132 0.516879140596319 1 1.00494508807409 21.9026021267698 0.0462146641844186 0.0135718242070678
AT3G27540_at 5.62708893771484 6.77600883290525 6.978012470612 6.95416576720525 6.55314936849829 5.59428800048245 7.98141615151293 7.86685227427294 6.82154292573979 6.301687666564 7.13810535628126 6.79242145821897 6.91831305058455 7.5653629205378 6.64401395599728 6.97841632317437 5.44204113266714 6.6015251429168 6.3057354156243 0.229694679848202 0.221460839576533 0.243875656860681 0.224715135923588 0.221460839576533 0.256812466835071 0.225134148843007 0.22885624703328 0.285033403264923 0.221981929949260 0.221460839576533 0.221460839576533 0.226920648020016 0.221460839576533 0.240502600799671 0.221460839576533 0.275075275721197 0.239940606514542 0.231256559296226 3 3 + 10207528 10208035 10207799.273 10206545 10208543 + gene protein_coding_gene FALSE TRUE AT3G27540.1 glycosyl transferase family 17 protein similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT3G01620.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT5G14480.1); similar to glycosyl transferase family 17 protein [Arabidopsis thaliana] (TAIR:AT1G12990.1); similar to putative N-acetylglucosaminyltransferase III [Cucumis sativus] (GB:CAF33485.2); contains InterPro domain Glycosyl transferase, family 17; (InterPro:IPR006813) -0.129617366248708 -0.676479561407298 0.516929095014462 1 1.00488954526083 13.4095461854955 -0.129617366248708 0.259762232791112
AT1G08940_at 5.73567372926917 6.01101549329253 6.15631047716097 5.91164474250344 4.84376698260023 5.28873481804704 4.19291848056446 3.91657958049137 4.67389369950626 4.41990407787856 5.01391479032943 4.99687722524954 4.56150264380473 4.78480691848213 3.51140163068474 3.08311044547881 3.21570949563957 4.07564601350484 4.71658293116694 0.248073721156551 0.249223167016522 0.254489008476344 0.253975048618124 0.252709480319602 0.248234695051169 0.245583502445145 0.251968261119933 0.254531623470808 0.247568026809905 0.247156893784735 0.246890461870673 0.24736923544862 0.245843454277640 0.253710646186746 0.266234469033902 0.254691238559705 0.259604677535895 0.245399624618554 1 1|0 +|/ 2877968 2879039 2878710.6 2877695 2879172 + gene protein_coding_gene FALSE TRUE AT1G08940.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT3G05170.1); similar to Os05g0141700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054606.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53035.1); similar to Os06g0109000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056573.1); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) 0.0689891716931714 0.675642299684974 0.517434635496389 1 1.00432797563442 9.63649622878147 0.0689891716931714 0.110813641733384
AT4G05040_at 4.86428782045608 4.34862982585831 5.08636419996225 4.5520767654095 4.80415326894323 4.52465610283771 4.59537986642492 4.29978833191545 4.53006089679895 4.99002840059878 4.98983951853565 5.18228702107413 4.81179420016482 4.5226744671642 5.02036288465303 5.01993632235713 4.61782600113061 4.46832556326293 5.11906823129826 0.233607192744342 0.234229447713466 0.228273005948795 0.226523353032276 0.228398084423496 0.23407367990907 0.233042870711311 0.226351075585373 0.247619409919113 0.230795697141117 0.226351075585373 0.227597379636508 0.227948287863000 0.235746758703031 0.227463265602273 0.230250631103042 0.231525133228777 0.239165361446723 0.229287003061837 4 4 + 2581222 2581681 2581464 2578644 2581796 + gene protein_coding_gene FALSE TRUE AT4G05040.1|AT4G05040.2|AT4G05040.3 ankyrin repeat family protein|protein binding similar to ACD6 (ACCELERATED CELL DEATH 6), protein binding [Arabidopsis thaliana] (TAIR:AT4G14400.1); similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT4G14390.1); similar to Os07g0527800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059835.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAS90661.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0821013470926532 0.674817635336446 0.51793286646038 1 1.00377546057423 9.48884198448833 0.0821013470926532 0.146521128572336
ATCG00430_at 9.85383341326706 10.6672265768125 10.3665498472431 10.2888131417837 9.87394982469285 9.03561665393547 10.5952777963803 10.5436149339836 10.5506946629467 10.8517635373442 11.0685439568417 11.6670607060020 11.1792365820171 11.0286233017056 10.1531348668944 11.1643630448127 10.6216693315957 11.0552120948407 10.6323137404547 0.121430862806933 0.117363720849338 0.128284489839767 0.121799634494164 0.119763558134816 0.126406672587099 0.120252431941592 0.119211024226575 0.126499700159525 0.120629466648242 0.120212026116826 0.115847760735818 0.117593405117538 0.121223566504189 0.131253065847139 0.118667357093997 0.123727835027015 0.124484406027555 0.118640316374465 C C - 49267 49831 49552.909 49257 49934 - gene protein_coding_gene FALSE TRUE ATCG00430.1 Encodes a protein which was originally thought to be part of photosystem II but its wheat homolog was later shown to encode for subunit K of NADH dehydrogenase. Identical to NAD(P)H-quinone oxidoreductase chain K, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain K) (NADH-plastoquinone oxidoreductase subunit K) (ndhK) [Arabidopsis Thaliana] (GB:P56756); similar to NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G11770.1); similar to NADH dehydrogenase 32 kDa subunit [Forsythia europaea] (GB:ABG74735.1); contains InterPro domain NADH ubiquinone oxidoreductase, 20 kDa subunit; (InterPro:IPR006137); contains InterPro domain NADH dehydrogenase (ubiquinone), 20 kDa subunit; (InterPro:IPR006138) -0.104891320595106 -0.67479692374055 0.517945383412632 1 1.00376159179179 20.9883541730976 -0.104891320595106 0.202786027354504
AT4G29260_at 7.79710718904329 8.48946839214078 7.88141466426426 7.93749159394317 8.07714370103601 8.09824262107896 7.85827540656876 8.50545938255455 7.09503631995719 7.4151772446105 7.58857326037435 7.68853930331322 8.03079476882435 8.00342200647166 7.55276673945854 7.62082495372217 6.82414048839303 7.21177817085889 7.15899308163821 0.161801110589943 0.16048530806588 0.165842624345216 0.163378194523202 0.156967584595430 0.174171340673034 0.158320589579500 0.163180887062099 0.188268975914676 0.166181235860485 0.158689307180636 0.15959523670565 0.156967584595430 0.163556120150949 0.162871424990924 0.163648764012426 0.178616443648573 0.159224413016083 0.156967584595430 4 4|0 -|/ 14422624 14423212 14422942.4 14422163 14423609 - gene protein_coding_gene FALSE TRUE AT4G29260.1 acid phosphatase class B family protein similar to acid phosphatase class B family protein [Arabidopsis thaliana] (TAIR:AT4G29270.1); similar to Plant acid phosphatase [Medicago truncatula] (GB:ABE84853.1); contains InterPro domain Acid phosphatase (Class B); (InterPro:IPR005519); contains InterPro domain Plant acid phosphatase; (InterPro:IPR010028) 0.0890158159310737 0.674054354446457 0.51839427421691 1 1.00326460715056 15.4746622905766 0.0890158159310737 0.164338245171169
ATCG00160_at 9.70121054265685 10.2187607596863 9.80149296955132 9.72796180366815 9.33496793683891 9.17478238437508 9.89445239893 10.1480170167893 10.4851881497276 10.9739451167029 11.6132632737041 11.7951297467729 11.2464393787364 11.2972193842349 11.5761772065197 11.3831538977583 10.6841282235209 10.8870728341362 10.6302043494267 0.150620873671255 0.138430920804768 0.142929037037594 0.144480901199076 0.144060276398948 0.157637691316399 0.143385463116643 0.138430920804768 0.148943522883548 0.138430920804768 0.145528572321521 0.149259365640406 0.147158049392144 0.144265138376767 0.139089576602366 0.145383968308807 0.142203156065296 0.142334641653948 0.138430920804768 C C - 15376 15588 15497.182 15013 15723 - gene protein_coding_gene FALSE TRUE ATCG00160.1 Chloroplast ribosomal protein S2 Identical to Chloroplast 30S ribosomal protein S2 (rps2) [Arabidopsis Thaliana] (GB:P56797); similar to ribosomal protein S2 [Eucalyptus globulus subsp. globulus] (GB:YP_636288.1); contains InterPro domain Ribosomal protein S2, bacterial and organelle form; (InterPro:IPR005706); contains InterPro domain Ribosomal protein S2; (InterPro:IPR001865) 0.066534107656636 0.67352099439636 0.51871684311248 1 1.00290794222913 20.7535901591247 0.066534107656636 0.104296054110307
AT4G37830_at 10.8720717840259 10.9447461546679 10.9400900848235 11.132864860216 10.9114980205301 10.8732671725907 10.6773810751923 10.9976115368245 11.0238130501854 10.7179955387285 10.9554947137376 10.9827388889394 10.6184741979423 10.9248985733022 11.0109518926672 10.8107363939006 10.5876969058333 10.8605587855728 10.7345290725667 0.110779449938240 0.110021473421264 0.114139111141945 0.111274279048394 0.110126245451835 0.107147480219137 0.109284103371904 0.109188286056140 0.125612697473483 0.109973285263743 0.106475223896978 0.108955886757426 0.106833952349159 0.114324492467209 0.110567306581509 0.105700593181364 0.112504568952823 0.110606987025367 0.111237327642034 4 4|0 -|/ 17787686 17788727 17788325.4 17787473 17788828 - gene protein_coding_gene FALSE TRUE AT4G37830.1|AT4G37830.2 cytochrome c oxidase-related similar to Os03g0772800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051412.1); contains InterPro domain Cytochrome c oxidase, subunit VIa; (InterPro:IPR001349)|similar to Os03g0772800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051412.1); contains domain Mitochondrial cytochrome c oxidase subunit VIa (SSF81411); contains domain no description (G3D.4.10.95.10) 0.0549876518445811 0.673441138501273 0.518765149462376 1 1.00285456318234 21.7533861766824 0.0549876518445811 0.0662265579865167
AT3G25530_at 10.1608214745941 10.1251493608740 10.2906183004015 10.1846136723421 10.4709589629823 10.0446041673266 10.5823267469231 10.2954247494356 10.0837140214618 10.5866185140470 10.5842155615998 10.6461689298367 10.3758757790234 10.2714600139520 10.6311140924206 10.5554212968348 10.2835720984454 10.5368820006156 10.2838833951162 0.104009233811084 0.104537758793629 0.103484379505942 0.104606278557567 0.100488190716061 0.104667469347173 0.0993278171228732 0.102302425516243 0.107394579165656 0.100360989425992 0.0999810692020868 0.102060307576244 0.100221201178162 0.108715393891653 0.0999707704962331 0.101254342377645 0.103705116946005 0.101199284176758 0.0992015409643037 3 3|0 -|/ 9273187 9274033 9273503.889 9273037 9274852 - gene protein_coding_gene FALSE TRUE AT3G25530.1|AT3G25530.2 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein|ATGHBDH/GHBDH; phosphogluconate dehydrogenase (decarboxylating) Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance. similar to phosphogluconate dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT1G17650.1); similar to 3-hydroxyisobutyrate dehydrogenase family protein [Geobacter uraniumreducens Rf4] (GB:ZP_01140314.1); similar to Os02g0562700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047154.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183) 0.0621424687612673 0.673111686739818 0.518964470261139 1 1.00263440335482 20.6711450285929 0.0621424687612673 0.0910143570018098
AT4G32910_at 6.86374876206722 6.89609077949253 7.04808519587737 6.9928981135323 7.56013067416994 7.11949238703086 6.60924227438275 6.41309657760939 6.10833055948139 6.30579197111583 6.16245919391851 5.6259153791757 5.836842124792 5.9269604458906 5.78079138637797 6.14281854138005 6.19103026574998 6.19484548323585 6.62974594665844 0.202500220936565 0.201532799481512 0.204915774995700 0.208254555016332 0.197398786097548 0.205681341933288 0.201646148549755 0.203082661115288 0.204370734917033 0.198278373436719 0.201861159866749 0.203792168818747 0.198463524198821 0.196851448565711 0.201698638005043 0.192563956706437 0.204725467127240 0.203932168124346 0.193537512496995 4 4|0 +|/ 15884334 15885177 15884824.8 15881259 15885419 + gene protein_coding_gene FALSE TRUE AT4G32910.1 similar to Os01g0746200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044228.1); similar to putative nucleoporin Nup75 [Oryza sativa (japonica cultivar-group)] (GB:BAD87530.1); contains InterPro domain Nup85 nucleoporin; (InterPro:IPR011502) 0.0596793438722523 0.669140344583645 0.52137085250602 1 0.999988066481533 13.1031801013454 0.0596793438722523 0.0841990268023139
AT2G36070_at 5.50494984600325 5.12467356645383 5.58943263455925 5.24191217247844 4.49589755711653 5.18362456200699 5.42626892292485 5.50967777205395 4.2315493967355 5.24741696610651 5.13628133648742 5.48804747969596 5.44451258825199 5.29410252209283 5.50618948242403 5.66356785230146 5.6117158612224 4.67255745840155 5.29213439488586 0.218654639154916 0.223716383017867 0.215518726441735 0.215518726441735 0.222311819010540 0.215518726441735 0.221487947194654 0.223690646271006 0.221401348952823 0.225872616206743 0.220354597405087 0.215518726441735 0.215518726441735 0.218851486732820 0.220806138705116 0.215518726441735 0.226498072932299 0.215518726441735 0.220312079812265 2 2|0 -|/ 15152290 15153434 15152777.143 15151915 15155210 - gene protein_coding_gene FALSE TRUE AT2G36070.1 ATTIM44-2 (Arabidopsis thaliana translocase inner membrane subunit 44-2) One of two genes in Arabidopsis that encode a putative subunit of the mitochondrial inner membrane translocase complex. TIM44 subunit is thought to provide the energy for translocation via hydrolysis of ATP. similar to ATTIM44-1 (Arabidopsis thaliana translocase inner membrane subunit 44-1) [Arabidopsis thaliana] (TAIR:AT2G20510.1); similar to Os07g0409700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059443.1); similar to Mitochondrial import inner membrane translocase, subunit Tim44 [Medicago truncatula] (GB:ABE94542.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim44; (InterPro:IPR007379) 0.0823728873575396 0.667957422182905 0.522088944524848 1 0.999202516447956 10.3974656667925 0.0823728873575396 0.149400005593525
AT4G39520_at 8.34261117144343 8.46258094843776 8.23508129634054 8.27885972624535 8.5831703784852 8.60037147329845 8.41608167398248 8.61879943812828 7.97542725659678 7.65822772249184 7.53807131373028 7.47289398730757 7.85882498242503 7.70388685804178 7.73234668527764 7.77555571143634 7.62206574023592 7.73632946605201 7.59355680453292 0.131242768299654 0.12599190052313 0.125285467674961 0.122699711384837 0.124506166672550 0.130268344169425 0.123864839028396 0.128934064122903 0.123694242529733 0.126248294423771 0.135237830610199 0.133204154118730 0.126270172182705 0.127338119490954 0.123456779196825 0.122471347175645 0.139875298569913 0.130345492647491 0.124747585650532 4 4|0 -|/ 18371660 18372122 18371960 18370962 18374198 - gene protein_coding_gene FALSE TRUE AT4G39520.1 GTP-binding protein, putative similar to ATDRG1 (ARABIDOPSIS THALIANA DEVELOPMENTALLY REGULATED G-PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G17470.2); similar to GTP binding [Arabidopsis thaliana] (TAIR:AT1G72660.3); similar to AAA ATPase; TGS; GTP1/OBG subdomain [Medicago truncatula] (GB:ABE89416.1); similar to Os07g0627800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060347.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain TGS; (InterPro:IPR004095); contains InterPro domain GTP1/OBG domain; (InterPro:IPR006074) -0.0490273371080652 -0.667103699691867 0.522607570791308 1 0.998636350867526 16.1533948987638 -0.0490273371080652 0.041569037099336
AT1G43690_at 7.49945495948431 7.91366730242463 7.65046885738101 7.72764688401757 7.9176146537843 7.67362442299513 7.76796043934587 7.84950448793232 7.15113409055434 7.04503397235736 7.23325528863981 7.43038318788732 7.52786513868076 7.33947455085163 7.06154918093665 7.543923420293 6.94844523485203 6.96546157303988 7.16797256190032 0.206611287705292 0.201934406242592 0.209139787588689 0.209075492117994 0.207532124838860 0.219246342787472 0.199905468321727 0.206142574819538 0.205215111019577 0.219026199666723 0.202377881550937 0.199505411804805 0.203901586717046 0.209917268426236 0.2011009295816 0.201869131161748 0.227132970812631 0.198409601667683 0.214168531682739 1 1 + 16484441 16484991 16484755.455 16480687 16485277 + gene protein_coding_gene FALSE TRUE AT1G43690.1 ubiquitin interaction motif-containing protein similar to H0525E10.10 [Oryza sativa (indica cultivar-group)] (GB:CAH66926.1); similar to OSJNBa0028I23.19 [Oryza sativa (japonica cultivar-group)] (GB:CAE04637.3); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.0598031979373412 0.666370947149219 0.523052959669674 1 0.998150924853154 14.9388302035048 0.0598031979373412 0.0854317045756085
AT2G45320_at 5.65119771536337 5.70669246755793 5.80252434117117 5.61334596246624 6.05323972859557 6.12031893348198 5.50639911252282 4.97609187734687 5.59023980692188 5.2732523147228 4.88491231556662 4.86936754447812 4.79782825635961 5.01274489915872 4.67242894604825 5.12577927663521 4.55244114862033 5.11028850774494 5.46656967000171 0.220135794193174 0.208019121400029 0.207127122592210 0.214234150093895 0.209434013328564 0.206235285625492 0.205652179897069 0.215071269289478 0.211387722061702 0.205652179897069 0.215505368590854 0.205652179897069 0.216783457972985 0.205652179897069 0.210416264516387 0.206182675946803 0.213036474291774 0.205652179897069 0.205652179897069 2 2 - 18691467 18692551 18691816.1 18691190 18693219 - gene protein_coding_gene FALSE TRUE AT2G45320.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE93197.1); contains domain Nucleotide-diphospho-sugar transferases (SSF53448); contains domain no description (G3D.3.90.550.10) -0.063934060245662 -0.666280463241626 0.523107974531323 1 0.99809101509473 10.8395151635009 -0.063934060245662 0.0985946214810306
AT4G26970_at 10.4088104678060 10.4117237498478 10.4994793164155 10.5889777628156 9.98077578468072 9.930601399662 10.1506959461560 10.3867633510857 10.5162490568158 10.4139624369980 10.5392578536011 10.5713995599213 10.2151339890788 10.3949625817284 10.3522663863602 10.3286930080692 10.0630434699999 10.4086822029922 10.1757285954852 0.0661234167942035 0.0596711091606019 0.0660153481822781 0.0613137757149357 0.0610904903712178 0.0616466688742263 0.0642628097847373 0.0600588589870354 0.0625570313146559 0.0596711091606019 0.0608701594183595 0.0615553040501915 0.0623858321930660 0.0641552835057417 0.0643807723670885 0.06166620482755 0.067377445888985 0.0649941428755428 0.0606357388637352 4 4 + 13547726 13548394 13548112.364 13542924 13548635 + gene protein_coding_gene FALSE TRUE AT4G26970.1 aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative Identical to Aconitate hydratase 3, mitochondrial precursor (EC 4.2.1.3) (Citrate hydro-lyase 3) (Aconitase 3) (ACO3) [Arabidopsis Thaliana] (GB:Q94A28;GB:Q9SZ36); similar to aconitate hydratase, cytoplasmic / citrate hydro-lyase / aconitase (ACO) [Arabidopsis thaliana] (TAIR:AT4G35830.1); similar to aconitate hydratase, cytoplasmic, putative / citrate hydro-lyase/aconitase, putative [Arabidopsis thaliana] (TAIR:AT2G05710.1); similar to Aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:P49608); similar to Putative aconitate hydratase, cytoplasmic (Citrate hydro-lyase) (Aconitase) (GB:Q6YZX6); similar to aconitase-iron regulated protein 1 [Citrus limon] (GB:AAC26045.1); contains InterPro domain Aconitate hydratase, N-terminal; (InterPro:IPR001030); contains InterPro domain Aconitate hydratase, C-terminal; (InterPro:IPR000573); contains InterPro domain Aconitate hydratase 1; (InterPro:IPR006249) -0.0495033138972987 -0.66609083264884 0.523223282721102 1 0.997965483487305 20.6586417612596 -0.0495033138972987 0.0445472916597285
AT4G12910_at 7.8548648437734 7.91951560167941 7.69467131436685 7.52507947659528 8.0148083435273 7.6726400809458 8.61011399967235 8.2163540676623 6.26012133530092 6.93464934439021 7.15989263650113 7.20085015235036 7.04590439822652 7.37382811622203 6.07777522024623 6.81141430773273 7.33572162617763 6.7163037864146 6.05306082551425 0.24182224973528 0.235359577964276 0.247545143178365 0.248795748687265 0.240711420137799 0.238522750451095 0.245529923385323 0.243928741401684 0.254702871674633 0.247578552326045 0.239836875788928 0.241143407283268 0.240860539938284 0.243616075372539 0.250616351237834 0.238838668732319 0.253516964900265 0.241376969361663 0.240219006623363 4 4|0 -|/ 7550617 7551575 7551181.125 7550434 7553329 - gene protein_coding_gene FALSE TRUE AT4G12910.1 SCPL20 (serine carboxypeptidase-like 20); serine carboxypeptidase similar to SCPL21 (serine carboxypeptidase-like 21), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT3G25420.1); similar to wound-inducible carboxypeptidase [Lycopersicon esculentum] (GB:AAF44708.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE89792.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0629275605386959 0.665939442196854 0.523315349440079 1 0.997865288987069 14.6290835238040 0.0629275605386959 0.0955830767711935
AT3G20820_at 10.5025752220781 10.8523987599911 10.1805149352366 10.2364157849509 10.8335243379795 10.5773644898300 11.6521431734650 11.7876946189826 10.7459886588976 10.9898588049445 11.5848664756923 11.911450739107 11.7488821944002 11.6218949185677 11.5987685296419 11.7437526127922 11.2190678239080 11.5369332295241 11.2484807541901 0.0922926107792994 0.0910975194099282 0.0944081531344695 0.0946435624057717 0.0906125682795822 0.0991281561432334 0.0900123801455858 0.08941557716458 0.100675571465262 0.0918102133587668 0.0924457872087627 0.0892209020318247 0.0911497727540044 0.0916612607566265 0.0919117238023694 0.0892209020318247 0.098278614226977 0.0928500355766862 0.0912091368680835 3 3 + 7281448 7281956 7281714.636 7280884 7282183 + gene protein_coding_gene FALSE TRUE AT3G20820.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G12940.1); similar to polygalacturonase inhibitor-like protein [Cicer arietinum] (GB:CAD56505.1); contains InterPro domain Rudiment single hybrid motif; (InterPro:IPR011054); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.057911031926595 -0.665771311749828 0.5234176079973 1 0.99775403932326 22.1355679843800 -0.057911031926595 0.0792079107627216
AT3G62140_at 6.13998605471564 5.38236800372802 6.41492447782711 6.29222494160305 6.61089051511525 6.07335934768076 6.19034801609356 5.94118703705927 6.28598793714794 5.97962926199445 6.07413794582916 6.17601514848056 5.72992767593831 5.80025842443264 5.86188062996091 5.89464995706727 6.01606847683336 5.95982271257538 6.31924544475749 0.225698576449520 0.220026339661408 0.213661274959221 0.219557797583913 0.222312369322993 0.227929287568611 0.216830843057494 0.22638466625036 0.221821216379014 0.20895302729816 0.209384070838266 0.210481958289663 0.214351623025676 0.212355592947882 0.20962344515986 0.20895302729816 0.246100937148185 0.209769136198977 0.22142588864781 3 3|0 +|/ 23018799 23019547 23019303.375 23018058 23019724 + gene protein_coding_gene FALSE TRUE AT3G62140.1 similar to Os01g0321800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042892.1); similar to hypothetical protein LOC334752 [Danio rerio] (GB:NP_956218.1); contains domain SUBFAMILY NOT NAMED (PTHR13495:SF3); contains domain FAMILY NOT NAMED (PTHR13495) 0.0892592247069142 0.665565320322872 0.523542910553527 1 0.99761777175988 12.1976857172393 0.0892592247069142 0.167788186656601
AT1G05805_at 8.83169369011656 8.9628124214068 8.25297722066958 8.2115431313602 9.29429509422415 8.63526635421619 8.12456938405029 8.13728664534876 8.1344280605996 8.06582121005878 8.39794644941428 8.2943416433535 8.38419568677796 8.85941878262178 6.90069079034315 7.8684387913824 7.99896750424394 7.67157124484799 7.77432327333194 0.163472105542267 0.164079228999522 0.165837679858021 0.165400051238162 0.159346033469188 0.164381899100668 0.163790174831054 0.166395136418543 0.170021746680670 0.164035823990444 0.157188328452726 0.157188328452726 0.157188328452726 0.158681467857779 0.173850037896392 0.157188328452726 0.174010453294625 0.167563610446061 0.163387824468683 1 1|0 +|/ 1746296 1747225 1746601.444 1744772 1747692 + gene protein_coding_gene FALSE TRUE AT1G05805.1 basic helix-loop-helix (bHLH) family protein similar to DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G43140.1); similar to B1065G12.3 [Oryza sativa (japonica cultivar-group)] (GB:BAB90521.1); similar to Os01g0900800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045106.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0699260475899759 0.665371294652404 0.523660951160126 1 0.997489454240246 16.5755407641507 0.0699260475899759 0.11652498184123
AT1G42970_at 12.6922798065845 12.7791680981337 12.8048512244797 12.8780819464902 12.6753202526272 12.6214685710049 13.5834940533807 13.7053403691108 13.3495051126121 13.6270146243094 13.8365728389295 13.9133226649554 13.7474569346194 13.834471357895 13.8643584154134 13.9718493681350 13.5593779187971 13.7498494182356 13.399431637167 0.0622962946103844 0.0614393817481129 0.0653875514976158 0.0617873385769579 0.0629030203875823 0.0640961371773726 0.0635248472483429 0.0616519042628561 0.0663763851829062 0.0614393817481129 0.0614393817481129 0.0614393817481129 0.0614393817481129 0.0646694206814797 0.0614726049537624 0.0614393817481129 0.0642325170129285 0.0633448782679051 0.0619819067174678 1 1 + 16131244 16131977 16131589.909 16129821 16132283 + gene protein_coding_gene FALSE TRUE AT1G42970.1 GAPB (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE B SUBUNIT); glyceraldehyde-3-phosphate dehydrogenase Encodes chloroplast localized glyceraldehyde-3-phosphate dehydrogenase. Identical to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (EC 1.2.1.13) (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) (GAPB) [Arabidopsis Thaliana] (GB:P25857;GB:Q9C7S2); similar to GAPA (GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE A SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G26650.1); similar to GAPA-2, glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G12900.1); similar to Glyceraldehyde-3-phosphate dehydrogenase, type I [Medicago truncatula] (GB:ABE83250.1); similar to glyceraldehyde-3-phosphate dehydrogenase B subunit [Glycine max] (GB:ABA86964.1); similar to Glyceraldehyde-3-phosphate dehydrogenase B, chloroplast precursor (NADP-dependent glyceraldehydephosphate dehydrogenase subunit B) (GB:P12859); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) -0.0470665882794452 -0.664590466090813 0.524136152464324 1 0.996973396667433 26.6016544515525 -0.0470665882794452 0.0303012945112598
AT1G34220_at 8.25673804060297 8.39235209901566 8.39831136095404 8.5267126317437 8.49495266582817 8.41221776769843 8.35380535057267 8.36498998642308 8.13290629898498 7.95418438091302 7.98587899819017 8.02911589355421 7.97083525896 7.8119904840303 7.88457686340844 7.8966909822697 7.98588650625948 8.04883324553609 7.82965842043373 0.155147002552281 0.154721754298765 0.156016960272968 0.154421099468566 0.153323145495189 0.151793601452750 0.152992140054398 0.148757549241192 0.168671150139987 0.157312873141029 0.148189473355173 0.1471455443459 0.148517804947004 0.157436779131901 0.154780536123227 0.149733992625696 0.168900494979346 0.162839939341796 0.147177956841018 1 1 - 12463102 12463653 12463345.273 12462827 12466067 - gene protein_coding_gene FALSE TRUE AT1G34220.1|AT1G34220.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G35730.1); similar to hypothetical protein [Solanum tuberosum] (GB:BAE46414.1); contains InterPro domain Protein of unknown function DUF292, eukaryotic; (InterPro:IPR005061) 0.0477767831589824 0.664135532224392 0.524413139744267 1 0.996672975872661 16.3619978524232 0.0477767831589824 0.0354015107600805
AT2G39950_at 6.56269026374446 7.00035873341645 6.90924650835234 6.96133679450358 7.02356010144414 6.90783589845828 7.21657401838378 7.4378435436097 6.87265548433155 6.561218003884 6.60121259146178 6.65180938277033 6.90549674002272 6.82503498101954 6.14448541990907 7.47196336675166 6.93002355721329 6.53280394219003 6.88946666198405 0.181209135542886 0.178722054791694 0.182303423612260 0.178016303539598 0.177027266446855 0.198270199756039 0.185037079994894 0.180063845219935 0.177926572074074 0.186447815849864 0.183772167388388 0.177520882679429 0.181613304996864 0.181135260396658 0.180630770478743 0.175261746117527 0.189774609339736 0.178783709053693 0.180571320805073 2 2 - 16683838 16684380 16684123.364 16683620 16687567 - gene protein_coding_gene FALSE TRUE AT2G39950.1|AT2G39950.2 similar to Os07g0100500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058671.1) -0.0602323915824527 -0.663610560512367 0.524732880286753 1 0.996326533284127 13.7685809649393 -0.0602323915824527 0.0876653628489138
AT1G67440_at 5.86317594542851 6.09343213294482 5.80999382665726 6.02127608923677 6.4932096274829 5.57797182242323 6.86043704337363 6.75820266869767 6.31620394713056 6.4985903503197 6.84202874927726 7.38641191188694 6.23574603008139 6.93918045788592 6.33895268233353 7.19154098363039 6.50614544930985 6.03311211329001 6.51712793331335 0.204628459858392 0.201328641341874 0.210567682378315 0.205441895531751 0.201328641341874 0.228520146223354 0.206495873027402 0.206102476151708 0.222344619818297 0.208205052832981 0.201328641341874 0.201328641341874 0.221484291015733 0.205143623272406 0.20437148112315 0.203354021086628 0.20812496715472 0.222181400873928 0.204971706474652 1 1 - 25267596 25268224 25267979.273 25267467 25269382 - gene protein_coding_gene FALSE TRUE AT1G67440.1 EMB1688 (EMBRYO DEFECTIVE 1688); GTP binding / GTPase similar to GTP binding / GTPase [Arabidopsis thaliana] (TAIR:AT1G67460.1); similar to OSIGBa0092E09.3 [Oryza sativa (indica cultivar-group)] (GB:CAH66376.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL56008.1); similar to OSJNBa0072D21.6 [Oryza sativa (japonica cultivar-group)] (GB:CAD40742.2); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain GTPase EngC; (InterPro:IPR004881); contains InterPro domain EngC GTPase; (InterPro:IPR010914) -0.089016692935203 -0.662259509205799 0.525556299516951 1 0.995436065405235 12.7487693315972 -0.089016692935203 0.168296902945639
AFFX-ThrX-3_at 5.77135528076144 5.79078683905304 6.97819641936964 5.85296202351505 7.68769951612569 5.9299447196488 7.8315928072659 5.92068244876376 8.49544171001277 8.73785741973406 8.16162806045533 8.28802120894522 7.8414428405417 7.96971537417881 7.82707518763714 8.18118329623825 7.81082088179086 7.53671500835772 8.84209703284234 0.127394131465630 0.129514272147452 0.125134722259238 0.124082220425015 0.118171174175925 0.124849678199244 0.120582748051188 0.122316488386704 0.124396828887912 0.121678906209951 0.118045263583385 0.119927495524999 0.122476604129932 0.121822017714660 0.121916056251775 0.117689366965670 0.122875494120337 0.123717650990337 0.119697336834355 NA NA NA NA NA FALSE FALSE -0.228063581445584 -0.661715435967907 0.525888114861716 1 0.995077929136176 14.7923394833785 -0.228063581445584 0.489711381488399
AT3G29320_at 10.2323404950992 10.3152602774628 9.429030553735 9.40046736042924 10.1441427328232 9.66352787735334 9.881154532857 9.52899800967555 10.3828813762638 10.2353944749859 10.9356769197330 11.0595096356972 10.1893704961905 10.7500077527199 10.9476254645861 10.2156502393546 9.78430906694823 10.7782226709505 9.74699577447377 0.113642630390672 0.113412804776909 0.121681335546830 0.117679481359255 0.113896272083156 0.121744572761881 0.119291426470843 0.113786522707609 0.120535135371979 0.113712308174899 0.113354505601991 0.115022664830702 0.115267575903267 0.113740671166017 0.11478676365447 0.115941374212429 0.121488497176052 0.126600490958374 0.115783977275324 3 3|0 +|/ 11257842 11258761 11258400 11254044 11259051 + gene protein_coding_gene FALSE TRUE AT3G29320.1 glucan phosphorylase, putative Encodes a plastidic alpha-glucan phosphorylase. In vitro, the enzyme has a preference for maltooligosaccharides, such as maltoheptaose. similar to ATPHS2/PHS2 (ALPHA-GLUCAN PHOSPHORYLASE 2), phosphorylase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G46970.1); similar to Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor (Starch phosphorylase L) (GB:P27598); similar to starch phosphorylase (EC 2.4.1.1) isoform L precursor, chloroplast - fava bean (GB:S47243); similar to Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor (Starch phosphorylase L) (GB:P53536); contains InterPro domain Glycogen/starch/alpha-glucan phosphorylase; (InterPro:IPR011833); contains InterPro domain Glycosyl transferase, family 35; (InterPro:IPR000811) 0.0653215622547934 0.661499368698704 0.526019923621039 1 0.994935775870033 20.1765170996029 0.0653215622547934 0.104220927051493
AT4G38130_at 9.28784263555045 9.36757459664894 9.07951765421534 9.22257439037167 9.60544603914346 9.12789976208927 9.34291472843105 9.35992356039246 9.24723813799531 8.89552440914873 9.41135069097914 9.3374920701 9.2746247788021 9.35937240787501 9.22938012904203 9.08489572203504 8.92862219587397 9.19317483500801 8.93744736728144 0.112206275133121 0.116311105099435 0.117288100027411 0.113407611860557 0.111624056260493 0.116933582645528 0.117632342920992 0.116538194317657 0.126595224019788 0.120107618725973 0.112390773723448 0.113443711109937 0.114955294721222 0.115201974572371 0.110108831725946 0.109922766047269 0.128694653982217 0.115903024970695 0.110223342217301 4 4|0 -|/ 17896504 17898015 17897597.625 17896286 17899485 - gene protein_coding_gene FALSE TRUE AT4G38130.1|AT4G38130.2 HD1 (HISTONE DEACETYLASE 19, HISTONE DEACETYLASE19); histone deacetylase|HD1 (HISTONE DEACETYLASE 19, HISTONE DEACETYLASE19) Encodes a histone deacetylase that enhances AtERF7-mediated transcriptional repression. Binds SIM3 and ERF7. Expressed in the nucleus in most tissues examined and throughout the life of the plant. Involved in jasmonic acid and ethylene dependent pathogen resistance. The sequence in GenBank has 17 AG dinucleotide repeats missing, which is also missing in Ler shotgun sequence from Cereon. Although it is annotated to be in Columbia, the GB sequence is probably not of Columbia origin. Plays a role in embryogenesis as mutants grown at higher temperatures display abnormalities in the organization of the root and shoot. Identical to Histone deacetylase (HD) (RPD3A) [Arabidopsis Thaliana] (GB:O22446;GB:Q9SZL3); similar to HDA6 (HISTONE DEACETYLASE 6), histone deacetylase [Arabidopsis thaliana] (TAIR:AT5G63110.1); similar to histone deacetylase HDA101 [Zea mays] (GB:AAK67142.1); similar to histone deacetylase [Mesembryanthemum crystallinum] (GB:AAF82385.1); similar to Histone deacetylase superfamily [Medicago truncatula] (GB:ABE78429.1); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286); contains InterPro domain Histone deacetylase; (InterPro:IPR003084) 0.0599615233859008 0.66146115225767 0.52604323910222 1 0.994910637133945 18.4262620417834 0.0599615233859008 0.0874161036550908
AT2G17120_at 9.69533121908801 9.92912813089523 9.98098244281749 10.0322641159795 8.75459523172337 8.58863044160744 8.00480489261459 8.75563612102288 8.9468546721771 8.25547001331097 8.08078488836508 8.91263675599748 7.47857298448653 8.21446789914714 7.96095344956856 7.91191411453318 7.45589938542053 8.36919768490699 8.13695415203431 0.162486838526632 0.162753377184632 0.165457156619644 0.173494005143824 0.167740871691896 0.175368799870405 0.173286044330131 0.165123383523461 0.174462462211326 0.162888217713188 0.164651804690876 0.164166913562963 0.170630246468023 0.181262385911685 0.1786750647831 0.167677674187435 0.195655169255059 0.168172360016914 0.165031074312702 2 2|0 +|/ 7466770 7467693 7467277.1 7466129 7467901 + gene protein_coding_gene FALSE TRUE AT2G17120.1 peptidoglycan-binding LysM domain-containing protein Identical to LysM domain GPI-anchored protein 2 precursor [Arabidopsis Thaliana] (GB:O23006;GB:Q8L9K9); similar to peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G21880.2); similar to Erwinia induced protein 1 [Solanum tuberosum] (GB:AAO32065.1); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) -0.0777399583720784 -0.661084753215305 0.526272910010316 1 0.994663111642611 17.4649114117072 -0.0777399583720784 0.139368931925720
AT2G01620_at 9.4471763203477 9.29069484508442 9.84070475221566 9.50849535933061 10.0193197698124 9.55792375500972 9.57767870502702 9.39824078093578 8.96442669437733 9.42023995150613 9.13030435041578 8.85244530163072 9.00845941846854 9.07118454523403 8.66402409820212 9.30961321134946 9.17152944271457 9.0734628207165 9.23364047589656 0.115470896900677 0.113169295305869 0.115502316781927 0.113169295305869 0.117767662309419 0.125464446194742 0.118955357947826 0.11356913244106 0.127250045803015 0.119665799524076 0.123274858342511 0.117040521364103 0.117509731050371 0.123839369577548 0.126712493373587 0.114868510872254 0.117344619096228 0.119693299516528 0.120569045876550 2 2 + 278490 279146 278813.818 278126 279295 + gene protein_coding_gene FALSE TRUE AT2G01620.1 MEE11 (maternal effect embryo arrest 11); zinc ion binding similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G26000.1); similar to F-box protein family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01193.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011) 0.0660943854540863 0.661044433333657 0.52629751597335 1 0.994636604175477 18.7006444222295 0.0660943854540863 0.106668764402131
AT1G67490_at 5.09957655143149 5.07968966672225 5.37904125935202 4.80233769061608 5.09239333334915 5.05097195143712 4.97323575848891 4.67330053489065 5.10898655826437 4.80095034190696 4.43269979975138 5.05170480086217 4.63394542384905 4.57513028640473 4.37349210937354 4.67091783391519 4.70057125208359 4.86146065344743 4.86062823487183 0.257299884402397 0.260350110670609 0.262609462914663 0.272655256093456 0.256736837009839 0.252239124510335 0.254983104258228 0.2582273078981 0.254714322525777 0.255919407222056 0.265962619176669 0.252239124510335 0.252239124510335 0.267264936915011 0.263740597643689 0.253434840775341 0.268371601606785 0.253615872413918 0.252239124510335 1 1|0 -|/ 25284322 25285354 25284769.444 25284114 25290274 - gene protein_coding_gene FALSE TRUE AT1G67490.1|AT1G67490.2 GCS1 (GLUCOSIDASE 1); alpha-glucosidase Encodes an alpha-glucosidase I enzyme that catalyzes the first step in N-linked glycan processing. Localized to the endoplasmic reticulum (ER). similar to alpha-glucosidase, putative [Arabidopsis thaliana] (TAIR:AT1G24320.1); similar to PREDICTED: similar to glucosidase 1 [Danio rerio] (GB:XP_696318.1); similar to putative alpha-glucosidase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAB86175.1); similar to Os01g0921200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045225.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside hydrolase, family 63; (InterPro:IPR004888)|similar to alpha-glucosidase, putative [Arabidopsis thaliana] (TAIR:AT1G24320.1); similar to putative alpha-glucosidase 1 [Oryza sativa (japonica cultivar-group)] (GB:BAB86175.1); similar to Os01g0921200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045225.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside hydrolase, family 63; (InterPro:IPR004888) -0.0681480054574501 -0.660826784919617 0.526430352041387 1 0.994493540733531 9.81182433410693 -0.0681480054574501 0.112772617390620
AFFX-r2-Ec-bioD-5_at 11.5238118302432 11.5949383257407 12.0597553833437 11.7807576396988 11.5925809393367 11.5858652089079 11.5628684238029 11.6359084456790 1.82770837591069 1.22561776459505 1.61768375834401 1.23653212066617 1.44393230286078 1.56732406779165 1.68556531359584 1.64524847063117 1.37260465781762 1.37132442938066 1.64740044312251 0.307923719333361 0.307443838266427 0.308117836169082 0.306641637428002 0.305058583749128 0.309871801137532 0.301729328410767 0.304964003915854 0.297576059661144 0.312487998500841 0.297602803373308 0.306814469555461 0.303579537421353 0.306360734567963 0.305469980132315 0.299086105004704 0.307620406225999 0.308424199048574 0.313560739123429 NA NA NA NA NA FALSE FALSE 0.0504880326909452 0.660817808216143 0.526435831176127 1 0.994487641121943 13.1967786502668 0.0504880326909452 0.0514175272392753
AT1G54520_at 9.9029822484302 10.0369232324141 10.1525558905596 10.1592645895377 10.0450051712640 9.93933446174226 10.4983848894620 10.3956780117458 10.4014007275981 10.3266882123955 10.3988478868389 10.1579379503203 10.2128148884835 10.3005362464892 10.2748751441173 10.5156515929021 10.3763769886994 10.4027479349928 10.1426682078573 0.0842868509773317 0.0799370485303764 0.0804173906471057 0.0853880568429105 0.0808434274752603 0.0877334435600519 0.0836479491839511 0.081933666972703 0.0941965939611098 0.0821925242047149 0.0823769613897158 0.0824557760244386 0.0863701060657747 0.0823458938073039 0.0820157011559551 0.0792269337696705 0.0825934943757182 0.0859620948541248 0.085124253039452 1 0|1 /|+ 20368161 20369514 20369018.778 20367115 20369728 + gene protein_coding_gene FALSE TRUE AT1G54520.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G57345.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAO19365.1); contains InterPro domain Protein of unknown function DUF1517; (InterPro:IPR010903) -0.04736543537431 -0.66037500288722 0.52670615037355 1 0.994196712452035 20.4513790427557 -0.04736543537431 0.0344809823511031
AT4G27880_at 6.54387229619359 6.89090176869068 6.09740287039453 6.33649178179054 6.95447526542913 6.3114735848829 5.69948266774324 6.16848895590884 7.19752391643762 6.29901737280054 6.83783077076246 6.48158649399699 6.27685799892217 6.55031395358253 6.37999230777559 6.31966293290746 5.64015219073209 6.21951958783813 6.31881597490932 0.205144056671357 0.207337268418478 0.218149571918753 0.221244511932825 0.220689429085077 0.234461375052616 0.209696948849498 0.212131656767992 0.214442442725068 0.215271487293984 0.204703021555538 0.201877988619157 0.209734060574711 0.202032104436213 0.215127367350706 0.201877988619157 0.235775344352917 0.219107572936194 0.221048184133528 4 4|0 +|/ 13884256 13884895 13884471.8 13883229 13885058 + gene protein_coding_gene FALSE TRUE AT4G27880.1 seven in absentia (SINA) family protein Identical to E3 ubiquitin-protein ligase SINAT4 (EC 6.3.2.-) (Seven in absentia homolog 4) (SINAT4) [Arabidopsis Thaliana] (GB:Q9STN8); similar to seven in absentia (SINA) family protein [Arabidopsis thaliana] (TAIR:AT3G61790.1); similar to Zinc finger, RING-type; Seven in absentia protein [Medicago truncatula] (GB:ABE81696.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain Seven in absentia protein; (InterPro:IPR004162); contains InterPro domain TRAF-type; (InterPro:IPR013322); contains InterPro domain SIAH-type; (InterPro:IPR013323); contains InterPro domain Zinc finger, SIAH-type; (InterPro:IPR013010); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.083802552497145 -0.659534361696368 0.527219567648042 1 0.993644880788332 12.8470029576861 -0.083802552497145 0.155846368255280
AT1G56200_at 10.2900282874411 10.3372822634443 10.1888191576861 10.0646487897532 10.5426268183932 10.5586655634559 9.62749914777506 9.8489148123282 10.4742815924892 10.4810791260642 10.5165523812671 10.3912188821329 10.2059136863887 10.3551285051706 10.3119374861293 10.3377224858514 9.8621503201816 10.0391956807772 10.4463587284626 0.0853971073626289 0.0840824871333121 0.0892757556989663 0.084092112659459 0.0893710950653204 0.0906193860810038 0.090129467043758 0.0883220253117744 0.0943816353688791 0.0840824871333121 0.084605775885754 0.0847267040517948 0.0855739175186147 0.0840824871333121 0.0893143296778928 0.0840824871333121 0.0958010267592566 0.0929039334624223 0.0863117962305121 1 1|0 +|/ 21034517 21035480 21034939.889 21034459 21035743 + gene protein_coding_gene FALSE TRUE AT1G56200.1|AT1G56200.2 EMB1303 (EMBRYO DEFECTIVE 1303) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G30475.3); similar to Os02g0152900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045922.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD38599.1) 0.0489982836951435 0.658726172570251 0.527713450626387 1 0.993114945265513 20.5421692271143 0.0489982836951435 0.0447718056246472
AT1G32220_at 10.4259964308122 10.5414497249335 10.8687710296023 10.6328933295706 11.0587787860034 10.5292982155601 11.3542812084802 11.1652261742507 10.7815825503356 11.0681408108704 11.2259368448134 11.2265732672622 11.2275800885871 11.1708300674287 11.0390167651029 11.5961604145332 10.7200724382288 11.2003864567795 10.9833708118595 0.0996534338504688 0.100407656718081 0.104130734929927 0.104837457989428 0.0960600413674418 0.103791071693577 0.100622732772595 0.100747171259282 0.10931117504201 0.0970057486204584 0.0960600413674418 0.0960600413674418 0.0963829065393034 0.104135803462531 0.0982734045515194 0.096660962226082 0.121744429179252 0.101029559469038 0.0960600413674418 1 1|0 +|/ 11608964 11609507 11609264.2 11607834 11609713 + gene protein_coding_gene FALSE TRUE AT1G32220.1 catalytic/ coenzyme binding similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT5G10730.1); similar to Os04g0403500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052699.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96868.1); similar to Os02g0556100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047127.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.0660758870258988 0.658456412217295 0.527878363015655 1 0.992938190929392 21.8821789960002 0.0660758870258988 0.107385854840495
AT1G60650_at 5.40841433980432 5.35202103296996 5.45682045060197 5.58989335596716 5.50373634419511 5.50757523708176 5.17904011403904 5.17497551339703 4.16518151997542 4.55614452054797 4.23710277986908 4.0159905122168 4.29781528289366 4.22909948854414 4.32001007477184 4.42665531274403 4.39654423480510 4.30447584490109 4.54584974944735 0.216441313353007 0.205836273193506 0.211625526534707 0.218691315346749 0.205836273193506 0.216702607787645 0.208318718103394 0.217322762375994 0.214732796491933 0.211267210513918 0.208418123240132 0.207587084851046 0.210751827012275 0.205836273193506 0.211073711668533 0.209378067565070 0.22708799392162 0.208908546028738 0.213583518860506 1 1 + 22345151 22345776 22345404.364 22343474 22346002 + gene protein_coding_gene FALSE TRUE AT1G60650.1|AT1G60650.2 glycine-rich RNA-binding protein, putative similar to glycine-rich RNA-binding protein [Arabidopsis thaliana] (TAIR:AT5G04280.1); similar to Os07g0187300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059075.1); similar to RNA-binding protein [Triticum aestivum] (GB:AAK01176.1); similar to Os03g0681900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050909.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0459816791309412 0.65845285160905 0.527880539928021 1 0.9929358583553 9.74698635917377 0.0459816791309412 0.0250301071140846
AT3G20870_at 8.3190106086442 8.37028706744484 8.3244609229263 8.49415497479457 8.6085441581047 8.19240932758234 8.55653483732108 8.52019714302095 7.8949109722178 8.14583692081532 8.18832995777099 8.36824135430257 8.13386391534739 8.41846404093245 8.21913643687366 8.1833036128247 7.99419597624315 8.12919056508195 8.11998405958597 0.14839683044281 0.139906302154381 0.144330825423334 0.140484280859879 0.143923426578046 0.143571264692535 0.143930697997971 0.146094571820526 0.170291855809848 0.143040774840919 0.142728188500343 0.139163901997887 0.147795080041250 0.144835904945947 0.147547351592561 0.139163901997887 0.159109489162229 0.145119267956252 0.145160258983457 3 3|0 -|/ 7309520 7311434 7310424.75 7309285 7312758 - gene protein_coding_gene FALSE TRUE AT3G20870.1 metal transporter family protein similar to metal transporter family protein [Arabidopsis thaliana] (TAIR:AT3G08650.2); similar to Os02g0196000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046190.1); similar to branchy [Setaria italica] (GB:AAZ20768.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) 0.0570741733133109 0.65837532745626 0.527927938593995 1 0.992885074655518 16.5521589049608 0.0570741733133109 0.0785283035854054
AT4G09570_at 6.81455452262974 7.2753345943903 6.63248616028084 6.33016050745274 5.35763551245582 4.8790354987693 4.72979387824448 4.88799392136189 4.88653265595398 4.4509993640988 4.41422799732687 5.25211910168813 3.97213023690563 5.07528137453605 4.99980850972960 4.45538209739784 3.75090267941627 3.90340665575536 4.15692077495768 0.229563376007047 0.237188723506945 0.219269956260205 0.238496814622405 0.220365762396728 0.232519704466101 0.223656576082448 0.226476898733764 0.219879989577484 0.238511384136204 0.217050777306247 0.222334590967161 0.228265441040261 0.222020997841296 0.222685786048438 0.224483860508446 0.233533595007164 0.217050777306247 0.217050777306247 4 0|4 /|+ 6051530 6052133 6051852.444 6049514 6052332 + gene protein_coding_gene FALSE TRUE AT4G09570.1 CPK4 (calcium-dependent protein kinase 4); calcium- and calmodulin-dependent protein kinase/ kinase Encodes a member of Calcium Dependent Protein Kinase (CDPK) gene family. similar to ATCDPK2 (CALCIUM-DEPENDENT PROTEIN KINASE 2), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G35670.1); similar to CPK5 (CALMODULIN-DOMAIN PROTEIN KINASE 5), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G35310.1); similar to CDPK9 (CALCIUM-DEPENDENT PROTEIN KINASE 9), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT5G23580.1); similar to calmodulin-like domain protein kinase isoenzyme beta [Glycine max] (GB:AAB80692.1); similar to seed calcium dependent protein kinase b [Glycine max] (GB:AAP03013.1); similar to calcium-dependent protein kinase [Vitis labrusca x Vitis vinifera] (GB:AAR28766.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0736667047463054 -0.658006569605797 0.52815343428719 1 0.992643585987153 10.3514034560805 -0.0736667047463054 0.129248120843609
AT3G06050_at 9.90264197082757 9.69040631299318 9.88192151030361 9.71105020995352 9.55726288074519 9.07849034624929 9.69297988406753 9.30865097497141 9.20489665553766 9.27619931864839 9.28010601863665 9.43605797541653 9.10731111281068 9.25880218384932 9.63348137688632 9.20948314877386 9.29009311816662 9.47747850488742 8.84003442433074 0.0925247869591277 0.0871232320856158 0.090981185596388 0.0952190255123121 0.091161748772081 0.094303903762408 0.0907431423390604 0.0903529724362454 0.0933648633310129 0.0888242261957147 0.0885825514422956 0.0893500773335247 0.0924640590282679 0.0921276651578932 0.0873017617579773 0.0892227148763299 0.0882662638333707 0.0896811323932367 0.100521097923462 3 3|0 -|/ 1826540 1827733 1827423.889 1826079 1827867 - gene protein_coding_gene FALSE TRUE AT3G06050.1 ATPRXIIF/PRXIIF (PEROXIREDOXIN IIF); antioxidant/ peroxidase Encodes a mitochondrial matrix localized peroxiredoxin involved in redox homeostasis. Knockout mutants have reduced root growth under certain oxidative stress conditions. Identical to Putative peroxiredoxin, mitochondrial precursor (EC 1.11.1.15) (Thioredoxin reductase) [Arabidopsis Thaliana] (GB:Q9M7T0;GB:Q8LEJ1;GB:Q8LPM1;GB:Q941C2); similar to TPX1 (THIOREDOXIN-DEPENDENT PEROXIDASE 1), antioxidant [Arabidopsis thaliana] (TAIR:AT1G65980.1); similar to Os01g0266600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042680.1); similar to mitochondrial peroxiredoxin [Pisum sativum] (GB:CAG30523.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.0690348324270702 0.657833252717604 0.528259437808606 1 0.99253012771341 18.8247480843143 0.0690348324270702 0.116239778871731
AT1G25490_at 8.91067576479879 9.04295965265399 8.7311501935903 8.76919738001103 9.00033521966644 8.9488796494788 9.23070513664851 9.24184247493194 9.29589219686354 9.17831202704395 9.40228017353956 9.47982137450028 9.32466155103113 9.28762904277273 9.50262587526222 9.40436090332094 9.07765612390456 9.14878176420322 9.05445254523772 0.111262158758551 0.106413699276578 0.113441129568924 0.113024892497080 0.102512537065336 0.115103799018068 0.105973785830943 0.111048320013116 0.111262404211545 0.110206947917069 0.108417184571034 0.103717767219847 0.110182052773495 0.108350049629643 0.108049350166390 0.103053675773200 0.112441137229259 0.105268706417704 0.114663827544482 1 1|0 +|/ 8953858 8954854 8954229.1 8951189 8955094 + gene protein_coding_gene FALSE TRUE AT1G25490.1 RCN1 (ROOTS CURL IN NPA); protein phosphatase type 2A regulator One of three genes encoding phosphoprotein phosphatase 2A regulatory subunit A; Recessive ethylene-response mutant EER1 displays increased ethylene sensitivity in the hypocotyl and stem Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform (PP2A, subunit A, alpha isoform) (PR-65 A) (AtA alpha) (Protein enhanced ethylene-response 1) (Protein ROOTS CURL IN NAPHTHYLPHTHALAMIC ACID 1) (PP2AA1) [Arabidopsis Thaliana] (GB:Q38845;GB:Q38855;GB:Q38952;GB:Q56WI3;GB:Q570B7); similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.1); similar to PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G13320.1); similar to serine/threonine protein phosphatase type 2A regulatory subunit A (GB:AAB60713.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0459484842766162 -0.65721059266915 0.528640373262558 1 0.992122737200682 18.2368161960301 -0.0459484842766162 0.0255033091685518
AT1G05790_at 6.97116720821462 7.12592984761151 7.19616440741608 6.89582501449798 7.90491380557373 7.18003850356782 7.27697062301211 6.58384663784473 6.6816135252066 6.70027003990225 6.5756059251672 6.83529106629149 6.66421710058151 6.44112027449257 5.98171902327222 6.86550565821295 7.00806665124779 6.02696254603338 6.61692942578037 0.194089085721205 0.192864882333409 0.201812106235714 0.205586862995731 0.194482772406453 0.190171316547482 0.197644334675267 0.204247649198792 0.220214790352973 0.197077078681561 0.191795715156894 0.191325174891986 0.199828216744984 0.198569208933467 0.204592929713667 0.191794715647372 0.20268775922949 0.203422512023727 0.195635905559456 1 1 + 1736544 1737161 1736812.2 1732870 1737488 + gene protein_coding_gene FALSE TRUE AT1G05790.1|AT1G05790.2 lipase class 3 family protein similar to lipase class 3 family protein [Arabidopsis thaliana] (TAIR:AT2G42450.1); similar to OJ991113_30.24 [Oryza sativa (japonica cultivar-group)] (GB:CAD41339.2); contains InterPro domain Lipase, class 3; (InterPro:IPR002921) 0.0941484436462379 0.65672557481445 0.528937215964509 1 0.99180564190263 13.7498980197801 0.0941484436462379 0.183145500198424
AT1G62640_at 6.51551844608175 6.26179594236134 5.44099862049314 5.7206561235765 6.21473473171738 5.81833708496745 6.90147779537785 6.88344978501218 6.19937645258097 6.40829298396968 7.46010035234356 7.83110961651804 6.57890711948621 6.84391559068542 7.28051229917951 6.76196135004844 6.51764532668681 6.78683105118107 6.26028524276726 0.199477280829899 0.201007137178224 0.218195174389046 0.200317016872001 0.216465478317707 0.205265111933088 0.208578529974326 0.199477280829899 0.217363973806052 0.209130834185317 0.209492902315030 0.200334469275068 0.208623032829217 0.202007598659802 0.206018349809540 0.202224728266362 0.209953795441266 0.204704163335921 0.207786825157704 1 1|0 +|/ 23197290 23198358 23197965.667 23195893 23198768 + gene protein_coding_gene FALSE TRUE AT1G62640.1|AT1G62640.2 KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III); 3-oxoacyl-[acyl-carrier-protein] synthase 3-ketoacyl-acyl carrier protein synthase III (KAS III) Identical to 3-oxoacyl-[acyl-carrier-protein] synthase III, chloroplast precursor (EC 2.3.1.41) (Beta-ketoacyl-ACP synthase III) (KAS III) [Arabidopsis Thaliana] (GB:P49243;GB:P93722;GB:Q9SI84;GB:Q9SXD3); similar to 3-ketoacyl-acyl carrier protein synthase III (KAS III) (GB:AAA61348.1); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; (InterPro:IPR013751); contains InterPro domain Beta-ketoacyl-acyl carrier protein synthase III (FabH); (InterPro:IPR004655); contains InterPro domain 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal; (InterPro:IPR013747) -0.0617871200964146 -0.656511891258902 0.529068027432301 1 0.991666006283941 12.8680915985512 -0.0617871200964146 0.0947921878849694
AT1G51400_at 13.2551919080729 13.3536489048080 13.0974092855377 13.2052778276258 13.2304788636947 13.3375023171346 13.3733012902633 13.5730420979982 14.0296344840450 13.9458191841112 14.1796700340457 14.1229172920454 14.0110459735358 14.0954769929007 14.0585720325969 14.1028346232351 13.8034967674559 14.2113162199887 14.0258058968515 0.0507315621531392 0.0473481152699403 0.0507564661181868 0.0491173983454233 0.0483156725213672 0.049097999358769 0.0474587383675699 0.0506330827867295 0.0501499447441602 0.0478391644419184 0.0469361827603932 0.0474567900438229 0.0477935852419335 0.0479769498623639 0.0480563437169176 0.0469361827603932 0.0509822562119467 0.0489310708419829 0.0487004234611232 1 1 - 19055848 19056134 19055992.364 19055691 19056250 - gene protein_coding_gene FALSE TRUE AT1G51400.1 photosystem II 5 kD protein similar to PSBTN (photosystem II subunit T) [Arabidopsis thaliana] (TAIR:AT3G21055.1); similar to unknown [Brassica rapa] (GB:ABD91572.1) -0.0491912949072293 -0.656476765834933 0.529089532165098 1 0.991643056798414 27.3400246103809 -0.0491912949072293 0.0466541420055588
AT3G63150_at 7.31691295546651 7.79799194404934 7.45143057830774 7.66510964153745 7.81092523330363 7.46513598747824 7.73879525275813 7.97629344579313 7.44908038775242 7.58804857470716 7.1746466355932 7.44512243303013 7.59161701259483 7.15481515366747 7.30179762616516 7.69246660038603 7.64891895634475 7.40356319497902 7.3284443710006 0.151848942970989 0.160214812492443 0.169702930091635 0.158197020324176 0.159757352402283 0.158832492626108 0.154262223449038 0.170380436817776 0.175526951145971 0.153990351859911 0.157826210199211 0.154520352311992 0.154045826926928 0.156927093582994 0.167945961130174 0.153807689696939 0.157287961796696 0.154381389165794 0.158823939205139 3 0|3 /|- 23340185 23340838 23340434.111 23339903 23343823 - gene protein_coding_gene FALSE TRUE AT3G63150.1 GTP-binding protein-related similar to EMB2473 (EMBRYO DEFECTIVE 2473), GTP binding / calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G27540.2); similar to Os03g0810600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051665.1); similar to Os01g0843300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044775.1); similar to putative mitochondrial Rho 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD81741.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain EF hand associated, type-1; (InterPro:IPR013566); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Miro-like; (InterPro:IPR013684); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain EF hand associated, type-2; (InterPro:IPR013567) -0.0689603494591662 -0.656317180172149 0.529187241462649 1 0.991538804044308 15.093729161211 -0.0689603494591662 0.116484086557688
AT1G72650_at 6.93166347279272 7.02883609413548 7.24361125723068 7.21512449089072 8.28198703362624 7.35130108730064 7.37022996087589 6.87475897873053 7.27629046892699 7.14232681506724 6.99955727987038 7.42384812958884 6.98458506684367 7.2441956586872 6.60682306147372 7.74197955961211 6.73559904042121 6.61205085898062 7.56270734042758 0.202144474249627 0.197241935623713 0.193623510893969 0.196718559198009 0.197001702827836 0.208230227978245 0.193459647300761 0.197091335216148 0.202657379663275 0.197736582204975 0.192873220364293 0.192617467170847 0.197420856606438 0.192965285989652 0.190628147611550 0.190636426758409 0.202624675661840 0.211269551830355 0.193810434593041 1 1|0 +|/ 27356255 27357074 27356616.2 27353129 27357402 + gene protein_coding_gene FALSE TRUE AT1G72650.1|AT1G72650.2 TRFL6 (TRF-LIKE 6); DNA binding / transcription factor Arabidopsis thaliana myb family transcription factor (At1g72650) similar to TRFL3 (TRF-LIKE 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G17460.1); similar to Os02g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048286.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16962.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to TRFL3 (TRF-LIKE 3), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G17460.1); similar to Os02g0776700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048286.1); similar to MYB transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD16962.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.094052732211268 0.655625514311843 0.529610852698926 1 0.991087221069775 14.4725330669855 0.094052732211268 0.183300904912713
AT2G15530_at 6.1017785866674 6.79361354820797 6.27964383254557 6.82749684635703 6.96886554371202 6.78175798402717 6.33066518179871 6.64562308474415 6.89069719010885 7.02954055272424 6.48075285654333 7.07338168838186 7.05641557212182 6.83071819844637 6.66739817014983 7.30551211993831 6.49769477879313 6.66455990649354 6.76365851147217 0.211864297320943 0.213675199984075 0.227320370040044 0.214053225853303 0.209368116015032 0.214217588709298 0.218684297611578 0.206541508127933 0.219264556859581 0.22177896396443 0.217464396689832 0.212003695923866 0.215984675566097 0.221352738141513 0.215590598493919 0.212231876196626 0.223161889186988 0.208160088145542 0.212950325466528 2 2 + 6782752 6784108 6783292.455 6779996 6784353 + gene protein_coding_gene FALSE TRUE AT2G15530.1|AT2G15530.2 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT4G34040.1); similar to Zinc finger, C3HC4 type (RING finger), putative [Medicago truncatula] (GB:ABE89604.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.086971513947998 0.655582725122137 0.529637065687439 1 0.991059298375341 13.4495236990710 0.086971513947998 0.165354275362073
AT4G27230_at 7.32605730267692 7.35830902150023 7.05826343800344 6.99571565829355 7.88920254537766 7.17055880017527 7.91035496902698 8.3343829416818 8.33819703718485 8.16984803754909 8.7399035291488 8.88761430203689 8.40332957895564 8.4319649774285 8.74253639078101 8.63417858079434 7.65724068606291 8.01324597151068 7.92160791756275 0.172139272871044 0.165878739887972 0.176705397577092 0.185646804239407 0.171075623514307 0.183813441412602 0.174102602055687 0.165878739887972 0.179418907000018 0.16795364006813 0.172108921886287 0.165878739887972 0.170854979770106 0.171878925412011 0.170848335689347 0.165878739887972 0.180444838725687 0.176962205482562 0.170282440233745 4 4|0 -|/ 13637529 13638292 13637989.5 13637345 13638425 - gene protein_coding_gene FALSE TRUE AT4G27230.1 histone H2A, putative Identical to Probable histone H2A.3 (HTA2) [Arabidopsis Thaliana] (GB:O81826;GB:Q8L8Z9); similar to RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5), DNA binding [Arabidopsis thaliana] (TAIR:AT5G54640.1); similar to Protein H2A.7 (wcH2A-4) (wcH2A-10) (GB:Q43312); similar to Os08g0427700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061844.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H2A; (InterPro:IPR002119); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0791534301340244 -0.655551695918641 0.529656074907127 1 0.991039050848955 15.7963402926864 -0.0791534301340244 0.144912068799844
AT3G01460_at 5.10607931612506 5.55161359982269 5.42031031485429 5.13214084875026 5.52992528573323 5.58679468587927 5.30381162488936 5.30272556572256 5.17196203485837 5.10798096192416 5.0440905894515 5.3448379880936 5.13846496016334 5.00872986592556 5.16710486188138 5.19784275315274 5.02420757463221 5.11739933394334 5.04951276738673 0.205124117757049 0.194309489978286 0.201643982953957 0.205981506964928 0.197464331937558 0.206233765073984 0.200145334473467 0.203124047357380 0.198407820819354 0.200585590367225 0.201115032805502 0.205530334976062 0.200867459908391 0.208744662667435 0.203343670726143 0.1948807150725 0.205529222803431 0.197797687528513 0.1939921966496 3 3 + 181356 181960 181684.273 173323 182461 + gene protein_coding_gene FALSE TRUE AT3G01460.1 MBD9 (METHYL-CPG-BINDING DOMAIN 9); DNA binding Encodes a protein with a methyl-CpG-binding domain. Has sequence similarity to human MBD proteins. Involved in the modification of the FLC chromatin acetylation state to affect FLC expression. Mutants show an early flowering, and enhanced shoot branching phenotypes. similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT1G77250.1); similar to Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) (ISS) [Ostreococcus tauri] (GB:CAL51590.1); similar to Os02g0192400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046163.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965); contains InterPro domain FY-rich, C-terminal; (InterPro:IPR003889); contains InterPro domain Methyl-CpG binding; (InterPro:IPR001739); contains InterPro domain FY-rich, N-terminal; (InterPro:IPR003888) 0.06087570500669 0.654924961043586 0.530040115544274 1 0.99063027064272 10.4867518197030 0.06087570500669 0.0923498795122284
AT3G10020_at 9.78242423638535 9.22604716524016 8.99537339645144 8.51710129902086 9.72562972691384 8.82596129569724 7.98619860462812 7.03454032246779 8.39956172672448 8.94525107413818 8.49733645466555 7.75145705988783 7.97841522390146 8.4600374243402 7.31908473035612 7.37025134799782 8.27923391023393 8.349189744975 8.93546334026918 0.140108838994669 0.13369783636726 0.134801689406371 0.135032751183458 0.141991333409447 0.141369421128886 0.130019321345045 0.130925461992783 0.138746735149891 0.12827852996592 0.129409280463477 0.134502124094418 0.146415224888288 0.130401418586953 0.136663218880452 0.150138485236994 0.136648830131193 0.133642036471764 0.132748452056075 3 3 - 3091255 3091623 3091421.909 3091048 3091771 - gene protein_coding_gene FALSE TRUE AT3G10020.1 similar to Os12g0147200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066153.1); similar to Os11g0149200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065754.1) -0.125376231329359 -0.654315529349128 0.530413714394768 1 0.990233112392216 17.1420183978949 -0.125376231329359 0.259775538080280
AT3G62880_at 7.10806562544393 6.82427223395499 6.63369334574485 6.7250340535273 7.3390088947971 7.06346276263386 6.44546607541017 6.79045436157718 5.74894740829509 5.9515939921477 5.50242873080913 5.75099772594829 5.83333985854375 5.90611501688044 5.38241434759604 5.62179217838086 5.98337941228883 5.618711891887 6.20818178666219 0.221382782404744 0.214888630465595 0.222095149267290 0.217294064107599 0.213944532974678 0.233459278476282 0.212969820648447 0.218347309984034 0.215069820153711 0.220058496756413 0.211616174086134 0.209686188189457 0.211030616353159 0.213536670870384 0.215471322394258 0.210749388939079 0.214152364629167 0.219051687038148 0.212538472502787 3 3|0 -|/ 23256119 23256952 23256501.556 23255637 23257030 - gene protein_coding_gene FALSE TRUE AT3G62880.1|AT3G62880.2 ATOEP16-4; protein translocase Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. similar to OEP16 (OUTER ENVELOPE PROTEIN 16), protein translocase [Arabidopsis thaliana] (TAIR:AT2G28900.1); similar to Mitochondrial import inner membrane translocase, subunit Tim17/22 [Medicago truncatula] (GB:ABE84978.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) -0.0607209051653275 -0.653774198587824 0.530745698508468 1 0.989880612636088 12.7009180646329 -0.0607209051653275 0.092195170989829
AT3G22845_at 8.66219972629878 9.11493756088304 8.96398279894645 8.8764623114211 8.86098530543692 8.23821559573448 8.46578830531344 8.40332859992102 8.15040121016215 7.75383667949591 7.92105727768988 8.16922654131328 7.63191042325024 7.95464770659607 7.64148646058496 7.71050275543215 7.79211028177622 7.83991961043917 7.36320912754311 0.195944386499000 0.196322592336198 0.205954386414433 0.197227420996458 0.195299562247523 0.200076278219588 0.197845373581693 0.195267763099243 0.212190993251770 0.189100435941841 0.205324272686536 0.199874214578762 0.193497403021038 0.211468815380936 0.197353856842474 0.198259657479559 0.210560769701547 0.204217485926818 0.20064878111771 3 0|3 /|+ 8087851 8088515 8088116.625 8087314 8088754 + gene protein_coding_gene FALSE TRUE AT3G22845.1 emp24/gp25L/p24 protein-related similar to emp24/gp25L/p24 family protein [Arabidopsis thaliana] (TAIR:AT3G07680.1); similar to coated vesicle membrane protein-like [Triticum aestivum] (GB:ABB90548.1); similar to Os03g0744800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051240.1); contains InterPro domain emp24/gp25L/p24; (InterPro:IPR000348); contains InterPro domain GOLD; (InterPro:IPR009038) 0.0750699572577622 0.653450247572416 0.530944429116292 1 0.989669789760403 16.4924491777622 0.0750699572577622 0.134535361196326
AT1G33810_at 9.9647562398095 10.0792210231728 9.71837424775965 9.8180875758341 10.0103329331835 9.76343375816819 10.2332430108085 10.1774046923244 9.8364036023202 9.8897764573773 10.0661062516035 10.3065356498748 9.9335727506124 9.87335672192519 10.5519969016442 10.0590392023427 9.8972594002637 9.74276875533832 9.87583478268992 0.0827847396024201 0.0809539450117572 0.0818271488262906 0.0827871849587566 0.0828653592859851 0.0830854275573303 0.0837354663075506 0.084080112734332 0.0896263952896148 0.0870914234499652 0.0815263570557547 0.081237493531546 0.0842921165836803 0.0896829100281553 0.0823582740140809 0.0809539450117572 0.0854456402845709 0.0838326820770852 0.0832215276971425 1 1|0 +|/ 12265078 12266607 12265804.375 12265013 12266827 + gene protein_coding_gene FALSE TRUE AT1G33810.1 similar to hypothetical protein MtrDRAFT_AC124956g13v2 [Medicago truncatula] (GB:ABE86786.1) -0.0498039696938175 -0.652787393790155 0.531351202236279 1 0.989238705722088 19.9311905526308 -0.0498039696938175 0.0510795853427802
AT4G32240_at 8.29925412213503 7.91199695892502 8.50530209341986 8.27580690410676 8.6837508208866 8.2706485411879 8.6698109331432 8.29646750764295 8.48835291270095 8.41136616691514 8.7613195212584 8.31480247319177 7.83071419286625 8.58345624109051 8.2751634389383 8.80418025115457 8.55251375751238 8.62661683994985 8.49827513239611 0.172677696498473 0.176330976698929 0.176344809818379 0.178098422569394 0.171449669208052 0.179445150364693 0.169203580387613 0.171904633519286 0.18980677998157 0.166815001556778 0.172672769185106 0.166815001556778 0.173562454267234 0.178625935092387 0.174034801097311 0.169698125633708 0.175534912426074 0.173138231141430 0.172178953793329 4 4|0 +|/ 15568582 15568996 15568775.3 15568306 15569211 + gene protein_coding_gene FALSE TRUE AT4G32240.1 unknown protein 0.0710462391316238 0.651549900510326 0.53211111577608 1 0.988434957995605 16.8314266902639 0.0710462391316238 0.123909430456934
AT1G34550_at 6.08470501267004 6.11513965753205 5.81706808891485 5.72618460311919 6.19682626804887 5.8610317526497 7.00047691422446 6.51088600826657 6.23397384043008 6.4288380280248 7.41625615923625 7.03930905423148 6.45575138004332 6.82221772684914 6.73574968538421 6.50255935583157 5.95901403761242 6.45432747674514 6.1593036519833 0.203569449112079 0.207884517409959 0.216470442328686 0.206469604490804 0.205021983713359 0.209386308571686 0.213433103807938 0.203611852387149 0.208786615241690 0.209091141084917 0.211097576626016 0.206137396056775 0.198572604197008 0.229085639949341 0.202669094363066 0.200857694124833 0.206260469513209 0.215553622851133 0.203311019308128 1 1|0 -|/ 12646900 12648189 12647499.667 12646674 12652624 - gene protein_coding_gene FALSE TRUE AT1G34550.1 EMB2756 (EMBRYO DEFECTIVE 2756); hydrolase, acting on carbon-nitrogen (but not peptide) bonds, in linear amides similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G09630.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA91928.2); contains InterPro domain Alkaline phytoceramidase; (InterPro:IPR008901); contains InterPro domain Protein of unknown function DUF616; (InterPro:IPR006852) -0.0642073086555799 -0.650716874061457 0.532623024136503 1 0.987894680994685 12.6376330963304 -0.0642073086555799 0.104069510583689
AT4G04770_at 11.0333250735323 11.2092009045790 11.1825119251060 11.2027958863535 10.7708355732165 10.2995666065399 11.4224817762225 11.3725414152003 9.8852190017525 10.5143581270868 10.7033885410200 10.2884797559171 10.4237688278265 10.2971037302387 10.3519627324989 10.0867125249423 10.3754276268694 10.7051454385030 9.98010944356574 0.106796359733809 0.109976380537603 0.110276527493048 0.110502372433364 0.110522792976547 0.113151342404487 0.105108752955836 0.107088585751922 0.128994322426254 0.107157751658607 0.104193659267710 0.110784178004575 0.106061643545923 0.111349881739959 0.113351104618794 0.105327548731343 0.116762231811986 0.122252007988256 0.113371702544134 4 4 - 2428085 2428668 2428439.545 2427798 2429848 - gene protein_coding_gene FALSE TRUE AT4G04770.1 ATABC1 (ARABIDOPSIS THALIANA NUCLEOSOME ASSEMBLY PROTEIN 1) Encodes an iron-stimulated ATPase. A member of the NAP subfamily of ABC transporters. Involved in Fe-S cluster assembly. Similar to SufB. Involved in the regulation of iron homeostasis. Able to form homodimers. Interacts with AtNAP7 inside the chloroplast. Identical to Protein NAP1, chloroplast precursor (Non-intrinsic ABC protein 1) (Protein ABC1) (Protein LONG AFTER FAR-RED6) (Plastid sufB-like protein) (NAP1) [Arabidopsis Thaliana] (GB:Q9ZS97); similar to ATP-binding-cassette transporter, putative [Arabidopsis thaliana] (TAIR:AT5G44316.1); similar to ABC transporter subunit (ISS) [Ostreococcus tauri] (GB:CAL54755.1); similar to ABC transporter subunit [Thermosynechococcus elongatus BP-1] (GB:NP_681280.1); similar to non-intrinsic ABC protein [Nicotiana benthamiana] (GB:AAX36074.1); contains InterPro domain FeS assembly protein SufB; (InterPro:IPR010231); contains InterPro domain SufBD; (InterPro:IPR000825) -0.0590116690771483 -0.650548313559879 0.53272664329517 1 0.98778543298374 21.3269378141081 -0.0590116690771483 0.0875479124013469
AT2G17350_at 7.97637294267414 7.82668365033491 8.3335714949974 8.22935344492808 8.55039635834979 8.37670357089087 8.16177734575952 8.279533730972 7.87049489763015 8.3559798287908 7.94967549959732 7.4789026474131 7.86334188179301 7.86057481054582 7.02282449045232 8.13437109575363 7.85836821013335 7.46595433918606 8.114524511479 0.169657336998041 0.163996059857142 0.171358360488198 0.168502629749717 0.163163991695432 0.173487033595724 0.164675433781281 0.168938060673559 0.183720271840452 0.171720522579109 0.182762684750407 0.164574943594193 0.169519935909365 0.164555575877933 0.181321467427273 0.171882275682591 0.168364994859686 0.173503442088466 0.171924868593160 2 2|0 -|/ 7552798 7553185 7552991.444 7552620 7553456 - gene protein_coding_gene FALSE TRUE AT2G17350.1 similar to Os08g0511800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062215.1) -0.0490002454587948 -0.65012015388113 0.532989900223581 1 0.987508046920496 16.1257580846097 -0.0490002454587948 0.0481154326004071
AT2G25430_at 7.26216467628646 7.33186803355357 7.51576573173594 7.3602936958452 7.98496453909106 7.53865956762942 8.02382954165397 8.03117440059481 7.82313705775987 7.65691628905665 7.8621582158804 7.80532166726627 7.86933683962462 7.92998624234187 7.61860635486257 7.74462620406684 7.41452755613158 7.59817769649481 7.86913310602153 0.150727048967973 0.151466187049746 0.147383331136241 0.151133421236458 0.151580362479156 0.154763709247726 0.152633557101822 0.151728788187080 0.159094978072703 0.147904282276413 0.144990686829098 0.149875251149790 0.154166960036261 0.162670124099630 0.145133420178329 0.149983888138615 0.163462855583461 0.153647291242002 0.155798521146445 2 2 + 10831167 10831686 10831399 10829449 10831995 + gene protein_coding_gene FALSE TRUE AT2G25430.1 epsin N-terminal homology (ENTH) domain-containing protein Identical to Putative clathrin assembly protein At2g25430 [Arabidopsis Thaliana] (GB:Q8LF20;GB:Q9SKK6); similar to binding [Arabidopsis thaliana] (TAIR:AT4G32285.2); similar to Os03g0275500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049708.1); similar to putative clathrin assembly protein [Oryza sativa (japonica cultivar-group)] (GB:AAV25008.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) -0.0575289166545971 -0.649974470028177 0.533079492750298 1 0.987413702069346 15.3877923973136 -0.0575289166545971 0.0826817780257445
AT1G36370_at 5.12393698638757 4.99444154089383 4.88368639548241 4.70942213932172 6.02358613957424 5.23760476862091 6.29137041425398 5.93744336460921 3.90909355831221 5.04656211075158 5.5316343235444 4.47672727323067 5.3677904090861 5.44140300969507 4.91192228402757 5.02228746291482 5.45946247741858 3.66988759097655 4.3892844443941 0.245843858084611 0.263029368270922 0.250573976215186 0.250739968654741 0.245843858084611 0.26057136036859 0.245861868516351 0.253435767924359 0.254066705655880 0.245843858084611 0.249111429159864 0.247145530435913 0.249241214689523 0.247285107192878 0.245843858084611 0.24746441849645 0.275310073324858 0.263652620654948 0.250981686226419 1 1 - 13697462 13698197 13697879.909 13697254 13699851 - gene protein_coding_gene FALSE TRUE AT1G36370.1 SHM7 (serine hydroxymethyltransferase 7); glycine hydroxymethyltransferase Encodes a putative serine hydroxymethyltransferase. similar to SHM6 (serine hydroxymethyltransferase 6), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT1G22020.1); similar to Os01g0874900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044960.1); similar to Os05g0429000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055615.1); similar to Serine hydroxymethyltransferase, mitochondrial precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA97575.2); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) 0.0818013834613832 0.649794800200742 0.53318999838994 1 0.987297374052367 10.1169128311502 0.0818013834613832 0.153830720623945
AT4G16830_at 9.8952850749204 9.80247780328567 9.8661689708735 9.84406986616686 10.0543357698389 10.0186238510930 9.705436488075 9.72137257754925 10.0561550965089 9.95065556077332 9.87180379106314 9.8257230901369 10.0742815891898 9.96585062262629 9.7085244632394 9.9488911966931 9.95218667315616 10.0333653131969 9.98694063563563 0.0969169552788292 0.0960506868919759 0.0917546574135744 0.0956486485240097 0.098802837771325 0.100327603440635 0.0951794447965034 0.0950786542160566 0.100346679039754 0.0973456293624902 0.100494158564029 0.095094349293793 0.0910990739790205 0.10295675010581 0.0959165898334843 0.0949076158779173 0.099101735043202 0.100318009806629 0.0972526018812234 4 0|4 /|+ 9471379 9472300 9472033.4 9470404 9472613 + gene protein_coding_gene FALSE TRUE AT4G16830.1|AT4G16830.2|AT4G16830.3 nuclear RNA-binding protein (RGGA) similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to nuclear RNA binding protein A [Spinacia oleracea] (GB:AAF14244.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861)|similar to nuclear RNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT5G47210.1); similar to transcription factor [Vicia faba var. minor] (GB:CAA66481.1); contains InterPro domain Hyaluronan/mRNA binding protein; (InterPro:IPR006861) 0.0446589366544587 0.649355876368396 0.533460015600072 1 0.98701331236255 19.8237190202513 0.0446589366544587 0.0178429850340781
AT1G53570_at 7.16760906110458 7.06456986275394 6.98759569362892 7.42453537702735 7.6624824164149 6.27307873768958 6.95735247871088 6.97355439704183 6.52805736137221 6.29926761026522 7.13745602968993 6.11177809143239 7.07600760567641 7.13655346665506 6.14210217101615 6.74615871262151 5.78871988536009 6.28137922829047 6.23997754147888 0.218893098275737 0.210734567819551 0.225318712666498 0.224564941387449 0.213588476943002 0.236462272369164 0.211004723024586 0.219030850679528 0.249659356415485 0.222815866310139 0.207644673620457 0.211386396801629 0.213458186239827 0.229709694424151 0.214782938433678 0.209977243200321 0.229111410656452 0.216631882905687 0.220587153859569 1 1|0 +|/ 19993542 19994358 19993984.6 19990908 19994803 + gene protein_coding_gene FALSE TRUE AT1G53570.1|AT1G53570.2|AT1G53570.3 MAP3KA (Mitogen-activated protein kinase kinase kinase 3); kinase MEK kinase (MAP3Ka) similar to YDA (YODA), kinase [Arabidopsis thaliana] (TAIR:AT1G63700.1); similar to MAP3Ka [Lycopersicon esculentum] (GB:AAS78640.1); similar to MAP3K alpha 1 protein kinase [Brassica napus] (GB:CAA08995.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245)|similar to YDA (YODA), kinase [Arabidopsis thaliana] (TAIR:AT1G63700.1); similar to MAP3Ka [Lycopersicon esculentum] (GB:AAS78640.1); similar to MAP3K alpha 1 protein kinase [Brassica napus] (GB:CAA08995.1); similar to MAP3Ka [Nicotiana benthamiana] (GB:AAS78639.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.121451750379014 0.649292248309624 0.53349916512327 1 0.986972148012611 13.5179907046539 0.121451750379014 0.252697644136849
AT2G41940_at 8.49266425442747 8.8756376733714 8.5291077162601 8.68326423069221 8.88848549474527 8.63116255693757 8.45212641717297 8.68722088078758 8.77643681675203 8.40609334497062 8.6211973627873 8.45151167218916 8.55816953488015 8.47307822110276 8.30227913979201 8.58838670162945 8.35653528254298 8.41656783456433 8.76262737305387 0.143621795269605 0.13874475586495 0.143157368852605 0.135350948535509 0.134645150365627 0.139179627637578 0.136849927328189 0.132757237524768 0.140453345650051 0.131916524484497 0.132824532527838 0.135204158618258 0.134019949195332 0.137116053354214 0.13829596195964 0.132273031592801 0.151669496072903 0.133069396527446 0.129727883239654 2 2 + 17514916 17515284 17515121.636 17514587 17515694 + gene protein_coding_gene FALSE TRUE AT2G41940.1 ZFP8 (ZINC FINGER PROTEIN 8); nucleic acid binding / transcription factor/ zinc ion binding Encodes a zinc finger protein containing only a single zinc finger. similar to GIS (GLABROUS INFLORESCENCE STEMS), nucleic acid binding / transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G58070.1); similar to zinc finger protein (GB:AAA87304.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.060663716510279 -0.648832025682867 0.533782385476289 1 0.986674513586787 17.2146344348551 -0.060663716510279 0.093500358936928
AT3G11930_at 11.1013145310836 11.2602193206487 11.4431164580924 11.4939549243837 11.3132252530878 11.3892056916415 11.1400026870393 11.2418859120061 11.1561192972923 11.0469312427812 10.9194568190534 11.1222377446136 10.7253999878476 10.6321571801239 10.9909605821317 10.8549275538205 10.7764213791331 10.7448239766934 10.7263025634807 0.0975519026312575 0.095635301685926 0.0984260713219583 0.0967236485391413 0.101667150436650 0.093118441175979 0.0965074513679736 0.0976689437127046 0.104455519488651 0.0960998150838925 0.0967206506810318 0.0948262427334651 0.0938348897823153 0.0952049868009812 0.0937388523609523 0.094882365448779 0.0966907603700822 0.0986184223991747 0.0953516041995221 3 3|0 +|/ 3776423 3777325 3776907.2 3776243 3777700 + gene protein_coding_gene FALSE TRUE AT3G11930.1|AT3G11930.2|AT3G11930.3|AT3G11930.4 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT3G58450.1); similar to putative stress-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87267.1); contains InterPro domain Universal stress protein (Usp); (InterPro:IPR006015); contains InterPro domain UspA; (InterPro:IPR006016) 0.0466835437580313 0.647033194561697 0.534890248015264 1 0.985512995606775 22.2089901909705 0.0466835437580313 0.0362955085856731
AT3G27670_at 5.52435638534677 5.47230831687968 5.49948709342523 5.98285762747983 6.38117015895694 5.73498833644129 5.72560540389858 5.98613662554338 5.27296181040981 4.89769634177908 5.22458805933535 4.98610222243149 5.26213702555534 5.28300757728446 4.68674409633022 5.65534581078504 5.35499419989812 4.94039616874577 5.54609702927871 0.207913501448551 0.208798174327073 0.215075430271740 0.217602377889264 0.204930541125011 0.224085594739311 0.204930541125011 0.206625281219062 0.222611947911915 0.211799858538186 0.204930541125011 0.206462276591736 0.204930541125011 0.211937816725472 0.209798828238237 0.204930541125011 0.228455998902499 0.21172526647907 0.208046499124054 3 3|0 +|/ 10253688 10254328 10254022.7 10246371 10254530 + gene protein_coding_gene FALSE TRUE AT3G27670.1 RST1 (RESURRECTION1); binding A novel protein, did not show high similarity to any protein of known function; reveals a novel genetic connection between lipid synthesis and embryo development. Expressed in all tissues examined including leaves, flowers, roots, stems, and siliques, but accumulation levels were not correlated with the degree to which different organs appeared affected by the mutation. Mutant plants showed alterations in the cuticular wax profiles and embryo development. similar to Os01g0169500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042134.1); similar to putative RST1 [Oryza sativa (ISS) [Ostreococcus tauri] (GB:CAL55289.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0788850611909548 0.646849224888923 0.5350036286463 1 0.985394368448846 10.9949051379306 0.0788850611909548 0.147023512752361
AT1G80960_at 6.8021736487943 6.94020017548107 7.03849430483208 7.09981751786153 7.94966996078608 7.36929288466373 7.23512727713295 6.86624111407078 7.30049296888818 7.09683264080106 6.26065280194689 6.71489144773202 6.79495059034575 6.57842208973921 5.58341332402713 6.94991426204387 6.76870468792611 6.4857807905113 6.78237896181796 0.217045473340861 0.224447221817347 0.223738625578012 0.222838933190676 0.219534634577898 0.228743461542448 0.214183999677891 0.217001374673996 0.227739559854754 0.230293240687948 0.225990926730007 0.217289124450278 0.220964093641061 0.214396032190267 0.245525749548442 0.215765537062176 0.221996767905146 0.223635442347665 0.224641153331295 1 1 + 30422354 30423076 30422800.364 30420729 30423215 + gene protein_coding_gene FALSE TRUE AT1G80960.1|AT1G80960.2|AT1G80960.3 F-box protein-related similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G67390.1); similar to Leucine Rich Repeat, putative [Medicago truncatula] (GB:ABE91318.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.069713580692811 -0.64592785827682 0.535571683862346 1 0.984800709969425 13.9511234970127 -0.069713580692811 0.121844052893464
AT1G01040_at 7.16717501527298 7.11180721758215 7.63393674738947 7.23934811775695 7.83258246237356 7.06158647716734 7.2005814923063 6.69580213536986 7.14593305923884 7.32352702144971 7.3672492239727 7.53624692108816 7.07141284829363 7.24435499895455 6.72507636589482 7.39167858882258 6.51342581585052 6.93250046920068 7.48644681577644 0.193257555283977 0.171615020795995 0.191917555843268 0.185827043826700 0.173025360170261 0.195284404190379 0.173237200711812 0.172661281106023 0.186152608505375 0.176112588099458 0.17740926335174 0.171615020795995 0.171615020795995 0.187017798563991 0.176138909810385 0.173553341850877 0.201610744506213 0.179086514603806 0.173730249445619 1 1 + 30443 31040 30764.364 23146 31227 + gene protein_coding_gene FALSE TRUE AT1G01040.1 DCL1 (DICER-LIKE1); ATP-dependent helicase/ ribonuclease III Encodes a Dicer homolog. Dicer is a RNA helicase involved in microRNA processing. Mutations in this locus can result in embryo lethality. Embryo shape at seed maturity is globular-elongate. Other mutants convert the floral meristems to an indeterminate state, others yet show defects in ovule development. mRNA is expressed in all shoot tissues. DCL1 is able to produce miRNAs and siRNAs. Identical to Endoribonuclease Dicer homolog (EC 3.1.26.-) (Protein CARPEL FACTORY) (Protein SHORT INTEGUMENTS 1) (Protein SUSPENSOR1) (CAF) [Arabidopsis Thaliana] (GB:Q9SP32;GB:Q9FDY6;GB:Q9MAN0); similar to DCL3 (DICER-LIKE 3), RNA binding / ribonuclease III [Arabidopsis thaliana] (TAIR:AT3G43920.1); similar to Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Type III restriction enzyme, res subunit; Ribonuclease III, bacterial [Medicago truncatula] (GB:ABD32724.1); similar to Os03g0121800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048796.1); similar to Os01g0909200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045148.1); contains InterPro domain Argonaute and Dicer protein, PAZ; (InterPro:IPR003100); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Protein of unknown function DUF283; (InterPro:IPR005034); contains InterPro domain Ribonuclease III; (InterPro:IPR000999); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) 0.0885647539468568 0.643285416934836 0.537202841624345 1 0.9831023439507 14.4510418512347 0.0885647539468568 0.173745743822057
AT4G12300_at 8.06213504938988 8.3267717613477 8.06337250050076 8.16217170609721 8.50774160989495 8.63806862864962 7.94877702984396 8.04462042614668 6.93252696834055 7.18852193712746 6.81069812720789 6.43099801507093 6.86980966912713 6.94117792476794 5.7010717251419 7.27214360523542 7.26931310981502 6.4866640885567 7.09010480517586 0.221809678990454 0.213017073728687 0.218514188494069 0.216058918958371 0.222035330306768 0.218014265828318 0.215031724829109 0.225907506227992 0.234812868958521 0.22238822427295 0.216414521161646 0.223247576514532 0.224816109171377 0.215276352060798 0.235377607497566 0.213017073728687 0.213017073728687 0.222197502188999 0.213017073728687 4 4 - 7308029 7308551 7308269.273 7307732 7309750 - gene protein_coding_gene FALSE TRUE AT4G12300.1 CYP706A4 (cytochrome P450, family 706, subfamily A, polypeptide 4); oxygen binding member of CYP706A similar to CYP706A6 (cytochrome P450, family 706, subfamily A, polypeptide 6), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G12320.1); similar to CYP706A5 (cytochrome P450, family 706, subfamily A, polypeptide 5), oxygen binding [Arabidopsis thaliana] (TAIR:AT4G12310.1); similar to putative cytochrome P450 [Matthiola incana] (GB:AAG34695.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0501937462478357 -0.643215511021388 0.537246034193455 1 0.983057498652314 15.1157668906488 -0.0501937462478357 0.0563332034848545
AT4G22000_at 7.18125809223053 7.35658438973381 7.52308846653114 7.40632459830525 7.17151458832335 7.30226800107198 7.19713732438942 7.51200191468657 7.38396029008854 7.79675831578286 7.7716910750638 7.7070059959142 7.50295475313013 7.53722556885354 7.9184853167647 7.64059609073995 6.98188667442152 7.06319769605195 7.80215518434993 0.173697386433690 0.176640741675129 0.177429445863507 0.178906067651298 0.181119954267708 0.199693494678702 0.182067625279166 0.175631632659827 0.187223701396479 0.173697386433690 0.175450168693966 0.177977607552130 0.180574237976169 0.192502638185238 0.179736692860645 0.173697386433690 0.203747793671602 0.194884057567017 0.176406977631361 4 4 - 11659882 11660181 11660043.273 11659650 11660916 - gene protein_coding_gene FALSE TRUE AT4G22000.1 similar to Os05g0114600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054462.1) -0.0532620252042293 -0.642648833921294 0.53759624181487 1 0.982694131892697 14.9194413351296 -0.0532620252042293 0.0693535380073463
AT2G39170_at 7.62985999528693 7.72395839436519 7.83148325682138 7.71496178323806 7.73399303726875 7.67092855299258 7.98702448510483 8.24257155089713 6.87737089627841 7.16870142820687 7.3543345881313 7.8140002583578 7.35603448135844 7.44739548257259 7.18853181247315 7.49376133808719 6.95331408887724 7.12233141029471 7.20786189622192 0.182119823549371 0.174060478895128 0.187450349446606 0.178203671721038 0.18840845829483 0.170691061856215 0.180760832217198 0.177496926775819 0.186866441319746 0.173502368785145 0.172983242046575 0.174417889914155 0.175767326573427 0.184857846774643 0.180053960729108 0.172092515150603 0.184190164194346 0.18081363897346 0.175227132554416 2 2 - 16341809 16342371 16342119.364 16341708 16343288 - gene protein_coding_gene FALSE TRUE AT2G39170.1 similar to Os08g0152500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061004.1); contains domain FAMILY NOT NAMED (PTHR21146) 0.0492781217249969 0.642292494218517 0.537816530171109 1 0.982465786093859 15.0297764683742 0.0492781217249969 0.0524081969441247
AT1G10840_at 8.38688717250373 8.42756279239803 7.97569321811342 8.10543337665854 8.4347467694523 8.2720225334997 8.1909808588956 8.55154099466287 8.19005977013177 7.98257773243663 8.40562263069478 8.4401066736399 8.2202996748768 8.18785794907164 8.36936701610564 8.15560624024721 7.70932914307648 7.63567438998894 7.99607793119567 0.164588179971051 0.161733145593226 0.174375608565757 0.164514173305026 0.155936009684004 0.174207446544057 0.152939115393097 0.159362749306628 0.165060066777219 0.154111851737698 0.155087781921695 0.154849606149063 0.156151484915948 0.156595023825879 0.156821951736420 0.159655463558821 0.161807874721672 0.171300202172666 0.163636442846756 1 1|0 -|/ 3607907 3609113 3608335.7 3607632 3610521 - gene protein_coding_gene FALSE TRUE AT1G10840.1|AT1G10840.2 TIF3H1 (eukaryotic translation initiation factor 3 subunit H1); translation initiation factor Eocodes eukaryotic initiation factor 3H1 subunit (TIF3H1). Identical to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) (TIF3H1) [Arabidopsis Thaliana] (GB:Q9C5Z2;GB:Q9SAB9); similar to Mov34/MPN/PAD-1 [Medicago truncatula] (GB:ABE85809.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639)|Identical to Eukaryotic translation initiation factor 3 subunit 3 (eIF-3 gamma) (eIF3 p38 subunit) (eIF3h) (TIF3H1) [Arabidopsis Thaliana] (GB:Q9C5Z2;GB:Q9SAB9); similar to Mov34/MPN/PAD-1 [Medicago truncatula] (GB:ABE85809.1); contains domain JUN ACTIVATION DOMAIN BINDING PROTEIN (PTHR10410); contains domain EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 3 (PTHR10410:SF3) -0.0540122466963762 -0.64219688903663 0.537875642218833 1 0.982404540802687 16.3914691858400 -0.0540122466963762 0.0723877136490163
AT3G43800_at 9.41147350976319 9.59313837153884 9.52690555480931 9.77506856493189 9.96832986039936 9.1196976368924 9.93869950650482 9.88057063373015 8.92452512709042 8.96724108205219 9.35722564714612 8.99120993774043 9.40520879454221 9.3023288763001 8.66073416218145 9.335269652888 9.07013086329805 9.19770680134431 8.78702630596137 0.157519280268744 0.158069294634630 0.170065774828739 0.163937747768096 0.156914980932933 0.18247759064753 0.156929163234591 0.157033643028194 0.166539110187036 0.160996260664310 0.158279802590223 0.158762012872395 0.157818946569187 0.164990018387656 0.162297516227928 0.154802321478809 0.154802321478809 0.159138812430506 0.167494765008357 3 3 + 15672039 15672692 15672444.182 15671846 15672912 + gene protein_coding_gene FALSE TRUE AT3G43800.1 ATGSTU27 (Arabidopsis thaliana Glutathione S-transferase (class tau) 27); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU19 (GLUTATHIONE TRANSFERASE 8), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G78380.1); similar to Probable glutathione S-transferase (Auxin-induced protein PCNT107) (GB:Q03666); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.0817879512180388 0.641661225976142 0.538206910729065 1 0.98206154346271 18.6806892949703 0.0817879512180388 0.156530083217082
AT3G09100_at 7.59966535760616 8.07164813577697 7.5272452492266 8.228367543316 8.42614031205336 8.01396036329673 7.85247088521731 7.94718744402834 6.69817562586608 6.62155966715379 6.2854987073851 6.44732909920607 6.97599135082165 7.10378997088317 6.48476165627994 7.12958256639421 6.73384672685649 6.87103151972335 6.97946388612529 0.240709499521709 0.232945780207967 0.246514751101454 0.232945780207967 0.238160544424916 0.237949377709261 0.234538319960721 0.236712131465374 0.241823186413998 0.238925307555881 0.233999362556979 0.236311851136459 0.239999562064598 0.246703335123173 0.240428470249262 0.232945780207967 0.246072982918684 0.243295165478636 0.236897240587093 3 3|0 -|/ 2788765 2789517 2789140.5 2787986 2793537 - gene protein_coding_gene FALSE TRUE AT3G09100.1|AT3G09100.2 mRNA capping enzyme family protein similar to mRNA guanylyltransferase [Arabidopsis thaliana] (TAIR:AT5G01290.1); similar to mRNA capping enzyme, C-terminal domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96062.1); similar to Os12g0193200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066345.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain mRNA capping enzyme; (InterPro:IPR001339)|similar to mRNA guanylyltransferase [Arabidopsis thaliana] (TAIR:AT5G01290.1); similar to mRNA capping enzyme family protein [Arabidopsis thaliana] (TAIR:AT5G28210.1); similar to mRNA capping enzyme, C-terminal domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96062.1); similar to mRNA capping enzyme, C-terminal domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92070.1); similar to Os12g0193200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066345.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain ATP dependent DNA ligase, central; (InterPro:IPR012310); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387); contains InterPro domain mRNA capping enzyme; (InterPro:IPR001339) 0.0843823173140057 0.641226220775363 0.538476019089042 1 0.981783189298732 14.7185249993529 0.0843823173140057 0.163553023500584
AT1G78960_at 4.49957687811087 4.51776778157285 4.88095153100423 4.72124047616432 5.31472245856699 5.16426117094981 4.82204614145458 4.39982122079543 4.46533159670421 4.56688759337159 4.25848680487308 4.08004547546433 4.36777243997571 4.55973482853584 4.14067198397801 4.55129683697639 4.83445456216965 4.25327669790291 5.15164444766923 0.203593894892461 0.188977653509523 0.195888990147181 0.193196219044091 0.189879993785431 0.207335394347444 0.188977653509523 0.195742257937596 0.204592882877605 0.196001963753209 0.193470753451115 0.201921655927689 0.188977653509523 0.189511304618684 0.192155032722979 0.194153998581199 0.198344075720647 0.193481250327722 0.203071801439302 1 1|0 +|/ 29704814 29705891 29705268.5 29701363 29706156 + gene protein_coding_gene FALSE TRUE AT1G78960.1 ATLUP2 (Arabidopsis thaliana lupeol synthase 2); lupeol synthase Encodes a multifunctional 2-3-oxidosqualene (OS)-triterpene cyclase that can cyclize OS into lupeol, alpha- and beta-amyrin. similar to LUP1 (LUPEOL SYNTHASE 1), lupeol synthase [Arabidopsis thaliana] (TAIR:AT1G78970.1); similar to lupeol synthase, putative / 2,3-oxidosqualene-triterpenoid cyclase, putative [Arabidopsis thaliana] (TAIR:AT1G66960.1); similar to beta-amyrin synthase, putative [Arabidopsis thaliana] (TAIR:AT1G78955.1); similar to pentacyclic triterpene synthase [synthetic construct] (GB:AAG41762.1); similar to beta-amyrin synthase [Medicago truncatula] (GB:CAD23247.1); similar to beta-amyrin synthase [Betula platyphylla] (GB:BAB83088.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpene synthase; (InterPro:IPR002365); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.0566269057536951 0.64067110157104 0.538819550192462 1 0.98142822266348 9.34438445715213 0.0566269057536951 0.0824058276612653
AT3G26290_at 9.89076553817227 10.0415217922573 10.3616444937044 10.5720032911632 10.5991677884522 10.3681213269004 10.80499727691 10.7574290806181 9.55640048352556 10.3759674289368 9.96545840283037 9.56525750007342 9.97233484651094 10.0517713916054 9.54826051395235 10.1170682855910 10.3717859979095 9.85505284828586 9.85919964517213 0.0857635759880685 0.0861947817610492 0.0890909395241213 0.0929533987672992 0.088643132052135 0.0886485882494148 0.0892851934122787 0.0904027793962553 0.092923338748156 0.0857635759880685 0.087541410681372 0.0873773942932758 0.0910747817423108 0.0911506386093023 0.0910441563183138 0.0884392345924711 0.0953040307928243 0.0877927383470787 0.0872615853897105 3 3 - 9634054 9634544 9634271.091 9633919 9635707 - gene protein_coding_gene FALSE TRUE AT3G26290.1 CYP71B26 (cytochrome P450, family 71, subfamily B, polypeptide 26); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B26 (EC 1.14.-.-) (CYP71B26) [Arabidopsis Thaliana] (GB:Q9LTL0); similar to CYP71B35 (cytochrome P450, family 71, subfamily B, polypeptide 35), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26310.1); similar to CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26300.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) 0.0509535035994824 0.640574961895226 0.538879058712598 1 0.981366775031692 20.3551544448004 0.0509535035994824 0.0605996496363758
AT1G28600_at 7.9942230684932 8.39554002614965 8.39489711398479 8.36296017589988 8.20355842766799 7.38626170387108 7.99756963228022 8.54343016560826 6.49486681541227 7.11726802204467 6.97758890719023 6.89104222505942 6.8549037909981 7.10511955206584 6.54691941246804 6.5995416740326 6.35664680028556 6.18167449972143 6.57031117347824 0.254601604532979 0.258006989472381 0.262878978664637 0.255698855943646 0.253877615127996 0.272936604102627 0.259102028654586 0.257226171065106 0.275051318904172 0.255873347436057 0.260980013743822 0.253877615127996 0.260875873798727 0.259249895136798 0.263587242534966 0.253877615127996 0.278853538548199 0.282796477409265 0.257198152445163 1 1 - 10051225 10052010 10051535.091 10050987 10053103 - gene protein_coding_gene FALSE TRUE AT1G28600.1|AT1G28600.2 lipase, putative|carboxylic ester hydrolase similar to GDSL-motif lipase, putative [Arabidopsis thaliana] (TAIR:AT1G28610.2); similar to lipase 1 [Brassica napus] (GB:AAX59709.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0920368818471504 -0.640223491064948 0.539096645343149 1 0.981142203302306 14.8681358449307 -0.0920368818471504 0.183797815763829
AT2G28240_at 5.0616380729555 4.86927735432075 5.22598955124575 4.72243107491359 4.41820265808698 4.89242845695034 4.30906028721408 4.92313092665681 4.76383649220405 4.72503857001922 4.64177402914438 4.69425371185978 4.80053837789722 4.31933969449038 3.91968327927846 4.77210418716405 4.67199664741791 4.25859878122636 4.61747541473501 0.221776350971181 0.216482536106639 0.221912179436786 0.218242240717460 0.218549851448581 0.231426324445046 0.217623189463328 0.218037810238478 0.226663036697036 0.211998258530978 0.212360837646175 0.211198948091673 0.212711796486311 0.212493838596221 0.215570125634882 0.211198948091673 0.21978242922719 0.217115213732893 0.218128753924059 2 2 + 12048474 12049013 12048744.091 12046289 12049220 + gene protein_coding_gene FALSE TRUE AT2G28240.1 hydroxyproline-rich glycoprotein family protein similar to MOM (MAINTENANCE OF METHYLATION) [Arabidopsis thaliana] (TAIR:AT1G08060.2); similar to Y51B11A.1 [Caenorhabditis elegans] (GB:NP_505150.1); contains domain PRICHEXTENSN (PR01217); contains domain ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED (PTHR10799); contains domain TRANSCRIPTIONAL REGULATOR ATRX-RELATED, POSSIBLE HELICASE (PTHR10799:SF10) -0.084172231040282 -0.639802910477082 0.539357084729182 1 0.98087361994321 9.40872125489926 -0.084172231040282 0.163492851545338
AT2G26340_at 9.13037678602331 9.14522253030571 9.20479348643816 9.14715662288765 9.30547768156975 9.31017060756968 9.22980842035462 9.4459394074376 9.8021238840133 9.58209577158968 9.80135639450151 9.69618622695786 9.5931788916226 9.82790978516514 9.75797714628544 9.9699080723049 9.46866028438255 9.78554202109227 9.56182484942445 0.0867385666917552 0.0866767509570383 0.0934039769260015 0.089047919040433 0.0865740517669961 0.0907821364954766 0.0857505705171372 0.0845384396897619 0.103133028783074 0.0858211795240722 0.0880590309306026 0.0842640437947293 0.0887018853605963 0.0882973930644096 0.0860022257676615 0.0859747520015405 0.0879269223167865 0.0899104950738779 0.0904854767756848 2 2|0 +|/ 11222498 11223531 11223190.556 11222330 11223725 + gene protein_coding_gene FALSE TRUE AT2G26340.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94264.1) 0.0464855823496113 0.638809917997786 0.539972279884874 1 0.980240124594653 18.9330038700557 0.0464855823496113 0.0388032517126375
AT3G10350_at 9.4562312304096 9.31738754555876 9.6596971503383 9.52458207984118 9.7183548993202 9.40955210928864 10.2065165112698 9.9021924189259 9.4391534443655 9.49005406160205 9.41824224667625 9.23691639564529 9.45004757660783 9.4079896285355 9.38576261425273 9.69258912848236 9.75525987424927 9.34858261415652 9.36679566219112 0.0882777465884396 0.0847905640917118 0.0887431699846878 0.0868091489228695 0.08303483305675 0.088507083868737 0.086131197964921 0.0844538121953127 0.0885764537905727 0.0830229154588075 0.0842778639750654 0.0857770674191632 0.0841225107830255 0.0896785264022313 0.0895066321651432 0.0830229154588075 0.0833283494072032 0.0863131776609673 0.0837615846153714 3 0|3 /|+ 3209699 3210649 3210301.9 3208244 3211299 + gene protein_coding_gene FALSE TRUE AT3G10350.1 anion-transporting ATPase family protein similar to anion-transporting ATPase family protein [Arabidopsis thaliana] (TAIR:AT5G60730.1); similar to putative ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD15543.1); contains InterPro domain Anion-transporting ATPase; (InterPro:IPR003348) -0.0563063315355607 -0.637769388250583 0.540617373111771 1 0.979577253741321 19.0962766510584 -0.0563063315355607 0.0821792791392666
AT1G24470_at 6.79551271012151 7.04829462509367 7.33088622910312 6.68073311622437 8.24575372340784 7.54977357996578 7.84379580674355 7.67419856794113 7.94184325006748 7.07926830091178 7.77856002265163 7.01456021628928 7.38036054015487 8.13870418985554 6.53403206817501 6.53388824291763 7.45641738254147 7.96217355916016 6.83738585166262 0.170534188446266 0.170717324310797 0.178895412192269 0.176335876246615 0.180750861664760 0.181606528542666 0.175089148602085 0.171577092271294 0.177662812198047 0.173405791828320 0.172506267225468 0.174805217091681 0.173955841589203 0.172127676386192 0.183233967048117 0.176543069403133 0.180914914271838 0.17763489464302 0.175272726890146 1 1|0 +|/ 8674999 8676229 8675602.1 8674044 8676396 + gene protein_coding_gene FALSE TRUE AT1G24470.1 short-chain dehydrogenase/reductase (SDR) family protein similar to b-keto acyl reductase, putative (GLOSSY8) [Arabidopsis thaliana] (TAIR:AT1G67730.1); similar to 3-ketoacyl-CoA reductase 2 [Gossypium hirsutum] (GB:AAY23355.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.087503730768941 0.637561510287422 0.540746305206277 1 0.979444941570079 14.7141199591245 0.087503730768941 0.173032974392983
AT3G24160_at 10.5029171556546 10.8827336238572 10.7932665362625 11.0130676252544 11.1108072515987 10.6963504009975 11.1855551058699 11.3844918761046 10.5427899421415 10.9392469998623 11.0245888978268 10.9846838810698 11.2741527924261 10.8806717375278 10.7893370397621 10.9805608721572 10.6365812796476 10.9415090420534 10.6896898421346 0.0865107542768769 0.0854725126580431 0.0882189998505267 0.0871642708629276 0.0854725126580431 0.0897403477469739 0.0869419558618297 0.0854725126580431 0.0908328905282534 0.0891274098610595 0.0901928672405621 0.0871959172030403 0.0863714849996636 0.0895666592388417 0.0882373925102999 0.0854725126580431 0.0974580523172475 0.0894400764508991 0.0882432268341427 3 3|0 +|/ 8727545 8728773 8728313.556 8726129 8729396 + gene protein_coding_gene FALSE TRUE AT3G24160.1 PMP (PUTATIVE TYPE 1 MEMBRANE PROTEIN) Encodes a putative Type 1 membrane protein (PMP). similar to type 1 membrane protein -like [Oryza sativa (japonica cultivar-group)] (GB:BAD10349.1); similar to Os08g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062545.1) 0.0647751389597173 0.637040374774239 0.541069609126832 1 0.979113415189727 21.7776085073774 0.0647751389597173 0.109984835125577
AT4G17940_at 7.87692740077914 7.71112390619762 7.73182267307478 7.13627496787713 8.09969337691418 7.77746994553454 7.81847974540941 7.32368102076272 6.96984602998343 7.54419351705299 7.32624524331868 7.52522960831239 7.46389158771925 7.21240511690263 7.53860006564517 7.37432021713434 7.63293097239311 6.89409018293657 7.1425623351472 0.187302919924123 0.186650942056909 0.183519673164271 0.184740097498528 0.181150101232442 0.180190177177462 0.181341788735669 0.183435423760123 0.191563871284300 0.184250755539968 0.188995232053019 0.181440521785031 0.191810252211902 0.181428820588116 0.179156309585794 0.177380976825209 0.187384364595697 0.189682079500650 0.196198493858133 4 4 + 9966031 9966765 9966333.273 9965754 9966979 + gene protein_coding_gene FALSE TRUE AT4G17940.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G20190.1); similar to Tetratricopeptide-like helical [Medicago truncatula] (GB:ABE85139.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0779295263985 0.63626259196454 0.541552345949773 1 0.978619074443109 14.9793498387469 0.0779295263985 0.147941150274219
AT1G51720_at 8.8350380832294 8.81842232706231 8.85745795944052 8.89261655814969 9.16458363777404 9.01947207957092 8.82745032706509 8.75133684773532 8.49515479364706 8.51235991905476 8.43193589931582 8.3988437899767 8.39848434418901 8.475249554889 8.30099056237988 8.46853233803326 8.69204578119772 8.35616748934688 8.57040879627093 0.158314252437235 0.143637583052284 0.161923135171059 0.155261655616581 0.154822569379710 0.143685579459627 0.151179362633905 0.145895080399535 0.149666585224107 0.157113745476464 0.141510770530278 0.143905968881974 0.158303569433394 0.152524373865645 0.151713782569068 0.156577116302985 0.148230500366582 0.154174439134451 0.160240437505118 1 0|1 /|+ 19188943 19189930 19189214 19184440 19190200 + gene protein_coding_gene FALSE TRUE AT1G51720.1 glutamate dehydrogenase, putative similar to GDH2 (GLUTAMATE DEHYDROGENASE 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT5G07440.1); similar to putative NADP-specific glutatamate dehydrogenase [Hevea brasiliensis] (GB:ABG21698.1); similar to Os01g0558200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043333.1); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase; (InterPro:IPR006095); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, dimerisation region; (InterPro:IPR006097); contains InterPro domain Glu/Leu/Phe/Val dehydrogenase, C terminal; (InterPro:IPR006096) 0.0448886896929386 0.635917392285197 0.541766678506284 1 0.978399848067818 17.3789250889569 0.0448886896929386 0.0291446026429257
AT3G03150_at 11.7714984584260 11.8724596464617 11.6175918454898 11.6169221832334 12.2171725523607 11.9648347370927 11.9053929735938 11.8591833826817 12.0490487964248 12.1878597934035 12.3139952015761 11.9454979536225 12.0230978927663 11.8599967277911 12.0701207140010 11.6790987392481 11.8291899957662 12.0589286982566 11.9723890645880 0.0629401576488426 0.0621766393953376 0.064064721662233 0.0642628550217497 0.063250475001762 0.0647176124609893 0.063562709606527 0.0644703836180778 0.0631983697710788 0.0625899186803986 0.0621766393953376 0.0621766393953376 0.0622955001841453 0.0671288232094245 0.0634542775124125 0.0621766393953376 0.0641588238922318 0.0636001884426443 0.0629080336745509 3 3|0 -|/ 727744 729318 728135 727561 729511 - gene protein_coding_gene FALSE TRUE AT3G03150.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G17165.1); similar to seed specific protein Bn15D1B [Brassica napus] (GB:AAP37967.1) -0.0476392150868179 -0.633096988695135 0.543519732285244 1 0.976612713647836 23.8742602850094 -0.0476392150868179 0.0477089171079926
AT1G29850_at 10.0180696202354 10.0470618880970 10.4413196694029 10.2532633172757 10.5136663448173 10.0143814906005 10.5250853186551 10.1529922098666 10.2565862497095 10.2672012790922 10.3604605391707 10.2026426698187 10.208574503603 10.2244759504300 10.0328064581124 10.3103966179228 10.2878642703079 10.3535100840160 10.1870143073696 0.0861322265591128 0.0881855180000262 0.0913401417053748 0.0946767248434224 0.0902064623785091 0.087459776792602 0.0868195056685432 0.0867160398807563 0.0916880451039652 0.0875813950326754 0.0917942092286383 0.0861586316861215 0.0885305894043611 0.0883902734361965 0.0894150703915962 0.0861322265591128 0.0940112769190216 0.0885870183236931 0.0884585061306255 1 0|1 /|+ 10448706 10449432 10449118.714 10447738 10449930 + gene protein_coding_gene FALSE TRUE AT1G29850.1|AT1G29850.2 double-stranded DNA-binding family protein similar to cell death-related protein [Oryza sativa (japonica cultivar-group)] (GB:AAT42243.1); contains InterPro domain DNA-binding TFAR19-related protein; (InterPro:IPR002836) 0.0652564437964265 0.633091087511949 0.543523403743311 1 0.976608981911463 20.4879926484004 0.0652564437964265 0.112677643194560
AT3G22970_at 9.64129023534635 9.93757567357197 9.4051896573034 9.49160367778587 10.2056910569833 9.88277611419729 9.39663088716774 9.32283682561858 9.08184831335707 9.3118213614695 9.20876924946237 9.06690644207197 8.90495811185588 9.25773353682876 8.96989958588367 8.94698288893822 9.31493473530042 8.90832550100028 9.00956706450172 0.141764993905788 0.144634462667741 0.141042928414988 0.144736551021182 0.142386577094408 0.143623520966755 0.140508527073565 0.148129280190373 0.163194204235366 0.152343431976908 0.149071199319151 0.140252585380773 0.144801471146472 0.151870779323547 0.151459885575688 0.148818450621269 0.151574617287100 0.150479527951626 0.152074761744195 3 3|0 +|/ 8153203 8153844 8153601.1 8152045 8154113 + gene protein_coding_gene FALSE TRUE AT3G22970.1|AT3G22970.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G14620.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44687.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAT76408.1); similar to Os03g0796600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051556.1); contains InterPro domain Protein of unknown function DUF506, plant; (InterPro:IPR006502) 0.0548166155581165 0.632899345805968 0.543642705017348 1 0.976487747132445 18.7638122674270 0.0548166155581165 0.0783484932881536
AT4G05530_at 9.2316202285936 9.42980347049977 9.5568758537800 9.51585983037816 9.67908676167535 9.18918638458599 9.3385473687283 9.18567290192526 8.69335821487686 8.70387247420197 8.40239340432078 8.46251762536457 8.52387610776666 8.69579515269221 8.56188709439643 8.57058426591993 8.70801333130937 8.65029110255373 8.52648825901952 0.140197204385902 0.138610505183906 0.148627726857640 0.141696802284480 0.141413947047856 0.139252906431557 0.147967794493411 0.140219843903706 0.142010372159927 0.139625850391464 0.141415340232055 0.136433787681272 0.142108580213297 0.144565087630056 0.137258082026202 0.136750117592578 0.148763784059178 0.141107786088311 0.134750553826278 4 4|0 +|/ 2817040 2817984 2817493.889 2816389 2818362 + gene protein_coding_gene FALSE TRUE AT4G05530.1 short-chain dehydrogenase/reductase (SDR) family protein similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29150.1); similar to Os09g0133200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062630.1); similar to PREDICTED: similar to CG10672-PA [Tribolium castaneum] (GB:XP_970502.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.0597606631712426 0.632796988621944 0.543706397766925 1 0.97642304213144 17.9974113049741 0.0597606631712426 0.0954678280320826
AT4G17460_at 5.11532401316714 5.40906977425504 6.56634559099261 6.50864943526364 7.5609800450071 7.77319893828427 7.17182611005455 7.27317055006475 8.69318044558315 8.14407904743194 8.72928926476177 7.71233221221238 8.73229402739655 8.33843561510926 7.87225852929486 8.14658319004488 7.78459598528861 7.61512741090174 9.78238847606193 0.191703273312638 0.195336802799674 0.184789131031653 0.193007656597469 0.183778053183859 0.190534023558795 0.185892740737552 0.200144431905209 0.208081084131312 0.186505678883367 0.181556628268401 0.183394351159971 0.188844032855994 0.186947132965454 0.185369822483226 0.184604331133972 0.200990856258082 0.190103087712494 0.198547462583415 4 4 + 9740276 9740970 9740734.727 9739675 9741158 + gene protein_coding_gene FALSE TRUE AT4G17460.1 HAT1 (homeobox-leucine zipper protein 1); DNA binding / transcription factor Encodes homeobox protein HAT1. Identical to Homeobox-leucine zipper protein HAT1 (Homeodomain-leucine zipper protein HAT1) (HD-ZIP protein 1) (HAT1) [Arabidopsis Thaliana] (GB:P46600;GB:Q546G7;GB:Q8LBA8); similar to HAT2, transcription factor [Arabidopsis thaliana] (TAIR:AT5G47370.1); similar to homeobox-leucine zipper protein hat1, putative [Brassica oleracea] (GB:ABD65141.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain HD-ZIP protein, N-terminal; (InterPro:IPR006712) 0.0515472150927248 0.632341223594499 0.543990055462262 1 0.976135045424107 15.1671108166704 0.0515472150927248 0.0658797473457297
AT3G10690_at 5.55141480665948 5.42558258063535 5.71827530885085 5.83846726132725 4.82400593797848 5.08250489329641 6.35072980267487 5.73334044883104 3.83202385726306 4.89479257679454 4.34199172410552 5.00395742051122 4.23981872097975 4.82885242441035 5.80095584800247 5.06505466447931 5.72596192762378 4.22084697019806 4.3802304378888 0.242893453002078 0.241674098692787 0.243428306810516 0.24936323616108 0.241674098692787 0.257417725104176 0.251355570554706 0.255099243826085 0.265914488506087 0.245599528327386 0.241674098692787 0.241674098692787 0.246903820262943 0.249082853811647 0.241674098692787 0.249028648703465 0.261340208010643 0.251660800768774 0.246345701304572 3 3|0 -|/ 3339818 3340629 3340347.875 3339397 3346345 - gene protein_coding_gene FALSE TRUE AT3G10690.1 DNA gyrase subunit A family protein Identical to Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (EC 5.99.1.3) (GYRA) [Arabidopsis Thaliana] (GB:Q9CAF6;GB:Q9SG75); similar to TOPII (TOPOISOMERASE II), ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) [Arabidopsis thaliana] (TAIR:AT3G23890.1); similar to Probable DNA gyrase subunit A, chloroplast/mitochondrial precursor (GB:Q7XZF7); similar to putative DNA gyrase subunit [Oryza sativa (japonica cultivar-group)] (GB:AAP73860.1); similar to DNA gyrase subunit A, chloroplast/mitochondrial precursor (GB:Q5YLB5); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain DNA topoisomerase, type IIA, subunit B or N-terminal; (InterPro:IPR001241); contains InterPro domain DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; (InterPro:IPR006691); contains InterPro domain DNA topoisomerase, type IIA, subunit A or C-terminal, alpha-beta; (InterPro:IPR013758); contains InterPro domain DNA gyrase, subunit A; (InterPro:IPR005743); contains InterPro domain DNA topoisomerase, type IIA, central; (InterPro:IPR013760); contains InterPro domain DNA topoisomerase, type IIA, subunit A or C-terminal; (InterPro:IPR002205) 0.0674803896098688 0.632026640811922 0.544185895516688 1 0.975936370729362 10.2017629232922 0.0674803896098688 0.119679678322469
AT4G04640_at 13.2208792886388 13.2303165959004 13.0821187212081 13.0175222501622 12.9760879758967 13.0920364477675 13.5370265718145 13.5678702961843 13.7403635657685 13.6771197858677 13.9358103806972 13.9376372735337 13.9038250184376 13.8641880596770 13.9694785839149 13.8993647325902 13.8507801760546 13.9337733475992 13.5406863728814 0.0622172120207658 0.0614733672421311 0.0608967390703537 0.0606549263963732 0.0606594127428452 0.0618220573548112 0.0633841078278665 0.0606549263963732 0.0635532177432934 0.063906899110362 0.061617969767423 0.0606549263963732 0.0607154319067957 0.063055789419148 0.0650898755894267 0.0606549263963732 0.064745124885418 0.0638423993638753 0.0651080107390871 4 4 - 2350774 2351310 2351048.636 2350496 2352016 - gene protein_coding_gene FALSE TRUE AT4G04640.1 ATPC1 (ATP synthase gamma chain 1) One of two genes (with ATPC2) encoding the gamma subunit of Arabidopsis chloroplast ATP synthase. Identical to ATP synthase gamma chain 1, chloroplast precursor (EC 3.6.3.14) (ATPC1) [Arabidopsis Thaliana] (GB:Q01908); similar to ATPC2 (ATP synthase gamma chain 2) [Arabidopsis thaliana] (TAIR:AT1G15700.1); similar to ATP synthase gamma chain, chloroplast precursor (GB:P29790); contains InterPro domain ATPase, F1 complex, gamma subunit; (InterPro:IPR000131) -0.0439739421593557 -0.631796196951391 0.544329382208598 1 0.975790890625442 26.9977724874810 -0.0439739421593557 0.0236377406383524
AT1G17880_at 9.50598946561114 9.61950829473403 9.36995729944397 9.20362151366239 9.37907312857002 9.24293417771521 9.62666274694571 9.7268577176517 9.06530035732382 9.53871404706486 9.74793896798267 10.0002461092573 9.67652288354527 9.48180342864546 9.94719083840144 9.41765402343758 9.26683445379826 9.0174880816732 9.42327010010507 0.110939328793449 0.110673677313441 0.116092137963264 0.117872592226739 0.112694992949539 0.116782961879727 0.113434640421343 0.110321678961096 0.122499714259847 0.106907965811352 0.109839752227765 0.106907965811352 0.108786895739327 0.113559430406615 0.112847349310195 0.111174774303572 0.119423314780440 0.118759491043343 0.107765298400807 1 1|0 -|/ 6152599 6153376 6152966.333 6152402 6153975 - gene protein_coding_gene FALSE TRUE AT1G17880.1 nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G73230.1); similar to transcription factor homolog BTF3-like protein [Lotus japonicus] (GB:CAE45592.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715) -0.0469131731048402 -0.628918634111442 0.546122985121129 1 0.973978311615364 18.9152695512954 -0.0469131731048402 0.0454995446793194
AT1G21920_at 10.3180505912327 10.7069222099480 10.8216570443989 10.8808220547934 11.4645774277734 11.1745937387977 10.7713288242842 10.8364442832441 10.8451377951911 10.9745985568227 10.4237177866158 9.8381227513977 10.7444593289 10.5861461654546 9.65407708300454 10.8119484945157 10.7960310368535 10.131047482937 10.9198758608884 0.102137919042008 0.0945014816377927 0.100951983629789 0.0966834030044539 0.0945014816377927 0.110747420207035 0.0951450664044423 0.0946875531583454 0.0980960388026805 0.0945014816377927 0.0945014816377927 0.0975048758269628 0.0945014816377927 0.0977447051560378 0.0988888604108805 0.0945014816377927 0.0983987024167413 0.101587391739520 0.0945014816377927 1 1|0 -|/ 7704477 7705057 7704775.3 7704244 7706129 - gene protein_coding_gene FALSE TRUE AT1G21920.1 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related similar to MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related [Arabidopsis thaliana] (TAIR:AT1G77660.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66263.1); similar to Os09g0453900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063348.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66264.1); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.0563921077469549 -0.628727806457428 0.546242052050076 1 0.973858373612427 21.5149984403976 -0.0563921077469549 0.085316510397105
AT2G16800_at 7.89293860229886 8.10771226059243 7.82709936203157 8.06442640876174 8.31809738023508 8.05937627390015 8.25777696565235 8.35512930990501 7.70874153201797 7.7304121700473 8.04570610988613 8.0392764798685 7.94146761550596 7.99623102801767 8.23106381649102 8.00976351867812 7.89524790760859 7.62921636026448 7.90457298265348 0.174649986527704 0.163960572448370 0.175026418281746 0.180454383917567 0.173276036904721 0.174930851889943 0.167304723554761 0.171241391155709 0.163302149086407 0.180323059961258 0.163188707691995 0.169074698471972 0.177970748108338 0.169835084290379 0.172152205946182 0.163188707691995 0.185566323976800 0.182528862085006 0.176841306287268 2 2 + 7293683 7294238 7293968 7292818 7294447 + gene protein_coding_gene FALSE TRUE AT2G16800.1 high-affinity nickel-transport family protein similar to high-affinity nickel-transport family protein [Arabidopsis thaliana] (TAIR:AT4G35080.1); similar to Os03g0156700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049011.1); similar to Os06g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056620.1); similar to Cation transport ATPase (ISS) [Ostreococcus tauri] (GB:CAL57572.1); contains InterPro domain High-affinity nickel-transporter; (InterPro:IPR011541) 0.0530574739602243 0.628381507350089 0.546458164398177 1 0.97364080356466 15.9876889868120 0.0530574739602243 0.0731892225781648
AT2G27830_at 9.26534502196248 9.59368649758239 9.13753162955075 9.45537073909702 10.3337631784645 9.78956441499897 9.0262852394655 9.11129555969425 7.28053843360153 7.54992655969165 6.80694403468526 6.63177686559442 8.14941830580568 7.75479683221453 5.35636545068895 8.0141727860089 7.87778353105792 7.49248455571314 7.82993647367583 0.23713518729134 0.231388518585850 0.241781498426533 0.238911666845752 0.233507429939642 0.240234173264476 0.231388518585850 0.231388518585850 0.248287444508609 0.236627802788026 0.244449165679235 0.250115659166216 0.237452463428901 0.238734339642673 0.240693712566352 0.232884451424416 0.244735054584361 0.244321919782213 0.23881462986178 2 2 + 11867879 11868359 11868086.909 11867295 11868552 + gene protein_coding_gene FALSE TRUE AT2G27830.1 similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT4G22760.1); similar to hypothetical protein [Catharanthus roseus] (GB:CAC09928.1) 0.0684525252082138 0.627939058740641 0.546734353203412 1 0.973362983213959 16.8710727605407 0.0684525252082138 0.123853092979973
AT1G06680_at 13.909030690748 13.9999583874407 13.8974319722060 13.8700890667030 13.9595634928498 13.8566021117541 14.2140271685376 14.3019904332439 14.6776068424210 14.6010552313624 14.9091560309533 14.8350332715399 14.7882612018001 14.6859081683118 14.7210880315663 14.7056923637873 14.2948124038513 14.8079834368931 14.5112821077923 0.0583939167892444 0.0564148974671317 0.0573630651486406 0.0594121428556094 0.0560613165235086 0.0642587602316697 0.0564550217500033 0.055078786162103 0.0598984954757084 0.0581697314349955 0.0588998313429692 0.055078786162103 0.0595456951979211 0.0599278586607886 0.0569725725209568 0.0564921101862949 0.0646408906107093 0.059597991427378 0.0558717392996861 1 1|0 +|/ 2048139 2049160 2048641.333 2047826 2049417 + gene protein_coding_gene FALSE TRUE AT1G06680.1 PSBP-1 (OXYGEN-EVOLVING ENHANCER PROTEIN 2); calcium ion binding Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution. Identical to Oxygen-evolving enhancer protein 2-1, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (PSBP1) [Arabidopsis Thaliana] (GB:Q42029); similar to PSBP-2 (photosystem II subunit P-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G30790.1); similar to Oxygen-evolving enhancer protein 2, chloroplast precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (GB:P11594); contains InterPro domain Photosystem II oxygen evolving complex protein PsbP; (InterPro:IPR002683); contains InterPro domain Twin-arginine translocation pathway signal; (InterPro:IPR006311) -0.0442431030258534 -0.627678498789176 0.54689704039832 1 0.973199456385692 28.6586566274920 -0.0442431030258534 0.0286216208924519
AT1G12910_at 8.67892049928617 8.73887899817362 8.50041369785885 8.79986072794197 9.29280973448655 8.99378328857683 8.65041332267368 8.43453526719083 8.73469670961592 8.34767021288921 8.3218344101823 7.81074822926536 8.15588122159466 7.86795860208631 8.1676001976127 8.43308760600348 8.5556253763991 8.1944348980496 8.62867561681855 0.123343890065091 0.122175369493789 0.127735512526307 0.126633952997592 0.121935915251022 0.124805583581781 0.123000599430393 0.122175948287379 0.132663580835289 0.129319869166217 0.127367906458761 0.126257050420117 0.122770550228584 0.123382738230314 0.128301882104386 0.121310897507761 0.124722347501278 0.126449981137957 0.123701961878286 1 1 - 4395137 4395561 4395370.455 4394899 4396289 - gene protein_coding_gene FALSE TRUE AT1G12910.1 ATAN11 (ANTHOCYANIN11); nucleotide binding Encodes a protein with similarity to the petunia WD repeat protein an11. similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G26640.1); similar to WD40 repeat protein [Ipomoea purpurea] (GB:BAE94397.1); similar to WD-repeat protein GhTTG2 [Gossypium hirsutum] (GB:AAM95643.1); similar to WD 40 protein [Matthiola incana] (GB:CAE76645.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0554606775368609 -0.626030886925017 0.547926426873129 1 0.97216684079381 17.1405738574021 -0.0554606775368609 0.0828647633741903
AT3G63000_at 8.83175625497048 9.08655940305364 8.93497008483228 9.19350725288467 9.28863841348628 9.02562920275145 8.82866518304902 9.01199574255677 8.59840896281572 8.67294800883239 8.51673940387337 8.39570218068673 8.33357820005082 8.31588986991632 8.16830103547416 8.7206179162978 8.36263737275599 8.30776625226091 8.74600829095263 0.175421493879111 0.182016307851632 0.190567076121405 0.187023441722329 0.184717128418976 0.182536637449174 0.184857161230983 0.186878175208542 0.209344837761353 0.183807438091643 0.184177370296274 0.185326200591787 0.186725918358192 0.182838970822627 0.190452011278782 0.175281240934216 0.196957474437369 0.197719487168697 0.183679406688159 3 3|0 +|/ 23295497 23296294 23295975.5 23294584 23296515 + gene protein_coding_gene FALSE TRUE AT3G63000.1 NPL4 family protein Identical to NPL4-like protein 1 [Arabidopsis Thaliana] (GB:Q9LYC2); similar to NPL4 family protein [Arabidopsis thaliana] (TAIR:AT2G47970.1); similar to Os01g0377700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043084.1); similar to Nuclear pore complex, rNpl4 component (sc Npl4) (ISS) [Ostreococcus tauri] (GB:CAL51738.1); contains InterPro domain NPL4; (InterPro:IPR007717) -0.0556794830189391 -0.62551472910284 0.54824914302615 1 0.97184385204164 17.5565197504221 -0.0556794830189391 0.0838110098202394
AT4G09670_at 9.60368191777835 9.7454214346531 9.4826520342559 9.74239592923105 10.1632171489768 9.9911724282253 9.77816031383126 9.8221488953203 9.60837874647365 9.63265689285552 9.5974249420521 9.60098262009601 9.71251216952566 9.65460943393466 9.5558616338089 9.87256109232624 9.60794218954842 9.58471432093193 9.73021502224338 0.119043705895165 0.115405904265727 0.123155051842536 0.123391764217565 0.115296158492352 0.120132837018112 0.115239371211652 0.114259384781306 0.127571363036627 0.111562789992621 0.117920951742645 0.116385475717788 0.111562789992621 0.113498589956827 0.117940421561557 0.116059871582010 0.115970734397563 0.115470589578653 0.113846796925288 4 4 - 6107465 6107919 6107687.545 6107147 6109119 - gene protein_coding_gene FALSE TRUE AT4G09670.1 oxidoreductase family protein Identical to Probable oxidoreductase At4g09670 (EC 1.-.-.-) [Arabidopsis Thaliana] (GB:Q9SZ83;GB:Q56ZU4;GB:Q94AR5); similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G34200.1); similar to AX110P [Daucus carota] (GB:BAA03455.1); contains InterPro domain Oxidoreductase, C-terminal; (InterPro:IPR004104); contains InterPro domain Oxidoreductase, N-terminal; (InterPro:IPR000683) 0.0493743705984908 0.623208380894416 0.549692496420352 1 0.970403588463975 19.4438110648518 0.0493743705984908 0.0597205007570275
ATCG00660_at 9.41538363556095 10.2267382246287 10.3099906477763 10.4915779442496 10.1936231796875 9.86487752894274 10.1639346105763 10.3432730770558 10.7794582073008 10.8864412634854 10.9230720596993 11.6328080484805 10.6503797185245 10.690185075704 10.8308250262504 11.0248898763387 10.3333321383972 10.8874184776805 11.0039257830327 0.125508131471790 0.120277106647909 0.119926177280289 0.123915053322184 0.115899516854972 0.118024884146748 0.119959249742498 0.126355598068223 0.126458472405806 0.121700491570999 0.124362577870431 0.119289086678304 0.124533449922526 0.123322261501135 0.122714800179785 0.117086030491557 0.125987674804619 0.124663327788421 0.124030053809806 C C - 68557 68829 68732.182 68512 68865 - gene protein_coding_gene FALSE TRUE ATCG00660.1 encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L20 (rpl20) [Arabidopsis Thaliana] (GB:P56794); similar to ribosomal protein L20 family protein [Arabidopsis thaliana] (TAIR:AT1G16740.1); similar to ribosomal protein L20 [Nicotiana tabacum] (GB:NP_054524.1); contains InterPro domain Ribosomal protein L20; (InterPro:IPR005813); contains InterPro domain Ribosomal protein L20, bacterial and organelle form; (InterPro:IPR005812) 0.0796784947850124 0.62147694214322 0.550777520896525 1 0.969325510614673 21.0069526330134 0.0796784947850124 0.157803290528906
AT4G32980_at 4.46429264018691 4.87752197845978 4.77672054511802 4.3132886731215 5.48208402043669 4.83156647971137 6.87034030160328 6.14071402989405 3.88510495611582 7.31340969983841 6.1560415567216 6.7089479046861 6.9239061980852 6.30095060742144 6.11031658572624 6.00395582377664 7.02776506203529 6.81952580758793 5.5350602079517 0.258525881445077 0.24991972905346 0.259583790415772 0.260420729275251 0.242838364433134 0.255007799451037 0.245212333981051 0.245685427979271 0.263965252374709 0.242495188242601 0.249516054123184 0.242495188242601 0.242495188242601 0.245676807630195 0.251306986710908 0.247373099856359 0.251411406297859 0.254676982271995 0.244644339590338 4 4 - 15914900 15915873 15915518.636 15914725 15918047 - gene protein_coding_gene FALSE TRUE AT4G32980.1 ATH1 (ARABIDOPSIS THALIANA HOMEOBOX GENE 1); transcription factor Encodes transcription factor involved in photomorphogenesis. Regulates gibberellin biosynthesis. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed at low levels in developing stamens. Identical to Homeobox protein ATH1 (ATH1) [Arabidopsis Thaliana] (GB:P48731); similar to BLH1 (BLH1) [Arabidopsis thaliana] (TAIR:AT2G35940.3); similar to bell-like homeodomain protein 4 [Lycopersicon esculentum] (GB:AAP47026.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain POX; (InterPro:IPR006563) 0.0956327986736492 0.621140917644263 0.550988239085457 1 0.969116600411433 11.2617083241783 0.0956327986736492 0.200404111664351
AT1G07530_at 7.65059228355449 7.88065750938186 7.6015419830173 8.11129386600904 8.25867911613348 8.37962731621685 7.65167810185434 7.8451678257527 6.92117931973424 6.94552748162492 6.30412926106142 6.38138517493678 6.2611342119264 6.6170538588835 6.0600680127544 7.32165711340197 6.95886638990485 6.4022896408453 7.10865438590144 0.168795500730702 0.170744047032390 0.175577113055716 0.171644342837773 0.169947652633532 0.178890965643046 0.166987337361284 0.167633836442300 0.168251544460876 0.1687991937461 0.173199589988974 0.167680535155032 0.167353398560244 0.171455426553191 0.174104859419560 0.170953103618595 0.170022171058370 0.174106796928164 0.175050195201847 1 1 - 2313844 2314328 2314144.273 2313579 2316466 - gene protein_coding_gene FALSE TRUE AT1G07530.1 scarecrow-like transcription factor 14 (SCL14) similar to scarecrow transcription factor family protein [Arabidopsis thaliana] (TAIR:AT2G29060.1); similar to SCARECROW-like protein [Lilium lon (GB:BAC77269.2); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.061351232123775 -0.620319207557969 0.551503724921402 1 0.968606165526935 14.6874597604323 -0.061351232123775 0.104528989488792
AT3G09810_at 6.95321935478013 7.28975331462902 7.46449246329774 7.57560283416783 5.60935118371864 5.37122345178773 6.67574260227025 7.15997629286194 6.14771740510289 6.03881764711118 5.7900448070285 6.36209578282176 6.31037535689197 6.920137429907 6.53002281940355 6.2263003087544 5.53685255260965 6.13818825252467 5.33197705944208 0.244522135049309 0.244522135049309 0.245598286400753 0.249854132591686 0.244522135049309 0.263584577514187 0.249827701991353 0.249050645899294 0.254469478726599 0.252413549178127 0.248061001687185 0.244522135049309 0.252706072991929 0.244522135049309 0.254062241600165 0.244522135049309 0.272063145313027 0.252129912032226 0.261209701698622 3 3|0 +|/ 3009618 3011022 3010536.667 3008699 3011442 + gene protein_coding_gene FALSE TRUE AT3G09810.1 isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative Identical to Isocitrate dehydrogenase [NAD] catalytic subunit 6, mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase 6) (NAD(+)-specific ICDH 6) (IDH-VI) (IDH6) [Arabidopsis Thaliana] (GB:Q8LG77;GB:Q9SF84); similar to isocitrate dehydrogenase, putative / NAD+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G03290.1); similar to NAD-dependent isocitrate dehydrogenase alpha subunit [Brassica napus] (GB:AAO61642.1); contains InterPro domain Isocitrate dehydrogenase NAD-dependent, mitochondrial; (InterPro:IPR004434); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) -0.0636286406841885 -0.620285516212516 0.551524866616668 1 0.968585250005862 12.7955482876699 -0.0636286406841885 0.111722528797960
AT1G47750_at 5.60284246776585 5.67381450556809 5.33122145230042 5.92095781954823 5.77432025382698 5.97086543651851 5.49358738776923 5.50704274699533 4.58592310422608 4.12119173823261 4.77172242755414 4.11555355993622 4.09483569010166 4.09989062431104 4.27022369907041 4.45816377882488 4.72788689534932 3.94461514639221 4.38919101914238 0.232530429895417 0.229051614932206 0.228234784015588 0.228234784015588 0.233187581114294 0.232029523570342 0.228234784015588 0.228234784015588 0.236096680984548 0.233852629253016 0.228234784015588 0.230906485327352 0.229583660067158 0.236939463848217 0.233694325439138 0.235036028536458 0.235452896159981 0.233357350516696 0.243782585814612 1 1 - 17571871 17572397 17572197 17571696 17572599 - gene protein_coding_gene FALSE TRUE AT1G47750.1 peroxisomal biogenesis factor 11 family protein / PEX11 family protein member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to peroxisomal biogenesis factor 11 family protein / PEX11 family protein [Arabidopsis thaliana] (TAIR:AT3G47430.1); similar to Os03g0302000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049868.1); similar to Peroxisomal biogenesis factor 11 family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95492.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.0624728270080203 0.619671574216793 0.551910204860445 1 0.968204296443555 9.997229891233 0.0624728270080203 0.108299188787736
AT2G01450_at 8.78625159430146 8.66974663748686 9.03967015304269 9.0847650770103 8.80255711558454 8.47987411808214 7.88051608490963 8.02914070299476 8.7653092433795 8.2358321696571 8.41518990630361 8.48436091231124 7.83717453944545 7.82221944871896 7.99035146315774 8.20055386143192 7.95927843193386 8.06752770610655 8.51904693056838 0.159463895405803 0.155116790064598 0.15260600438492 0.149139222430118 0.154810882568128 0.153957878093473 0.167687133582734 0.161253658984719 0.153772450134383 0.156091620863986 0.149139222430118 0.14992209640698 0.155133418072870 0.159743225976569 0.159014238303408 0.149139222430118 0.160398775323178 0.167253475109845 0.165292563954258 2 2 - 199732 200228 199941.636 199510 203125 - gene protein_coding_gene FALSE TRUE AT2G01450.1|AT2G01450.2|AT2G01450.3|AT2G01450.4 ATMPK17 (Arabidopsis thaliana MAP kinase 17); MAP kinase member of MAP Kinase Identical to Mitogen-activated protein kinase 17 (EC 2.7.11.24) (MAP kinase 17) (AtMPK17) (MPK17) [Arabidopsis Thaliana] (GB:Q84M93;GB:Q9ZVF9); similar to ATMPK8 (Arabidopsis thaliana MAP kinase 21), MAP kinase [Arabidopsis thaliana] (TAIR:AT1G18150.1); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to MPK9 (MAP KINASE 9), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G18040.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to double HA-tagged mitogen activated protein kinase 17 [synthetic construct] (GB:ABG54344.1); similar to mitogen-activated protein kinase 9 [Brassica napus] (GB:AAU95462.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0503277234072885 0.619447199268585 0.552051072057624 1 0.968065156219069 16.8984709261988 0.0503277234072885 0.0651707760135325
AT3G13460_at 8.66944155897111 8.9951927940234 8.3879691209453 8.62140561978467 8.3606080020148 8.58254850113633 7.95881300354641 8.74792444263986 8.50915344612388 8.5399751589336 9.18146189285503 8.8487095866219 8.88073645733595 8.80804920779035 8.63532189616916 9.17583169425339 8.76866968824691 7.96028705515661 8.5079480048585 0.154516972034649 0.146993998259401 0.152329892011556 0.14826501274301 0.155984677400009 0.154054526559828 0.146681025210506 0.144683182233693 0.152264324207562 0.141964683147679 0.140804775595731 0.144629027157116 0.140804775595731 0.150025670897709 0.150142726017557 0.144251098923995 0.147370770020618 0.147324631241919 0.148081976457070 3 3|0 -|/ 4385293 4386114 4385618.5 4384721 4388508 - gene protein_coding_gene FALSE TRUE AT3G13460.1|AT3G13460.2|AT3G13460.3|AT3G13460.4 ECT2; protein binding|ECT2 Physically interacts with CIPK1. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55500.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE87461.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.0793238796700424 0.618428103255102 0.552691145113547 1 0.967433765889802 17.1911923661039 0.0793238796700424 0.157903340338237
AT1G09430_at 9.87641188545298 9.8987705074966 9.73072659075613 9.68951453835804 9.88862003170936 9.69713075302215 8.77237357267368 8.79293206547552 9.64002087787745 9.18525766141883 9.32671986269856 9.16092713114021 9.18542901727708 9.10274752054476 8.96301503244312 8.85535961967514 8.78277772053777 8.97051837847664 9.28842295534587 0.129016947409751 0.131219282067584 0.133629737038612 0.132869823984292 0.131526773148566 0.127352038641414 0.131212296608955 0.132985524611296 0.132546220742803 0.133093459609656 0.127532500324216 0.134571377043883 0.129192007444549 0.136710070548687 0.134193294207865 0.138134389100607 0.132313369351865 0.136390121897897 0.132357829207558 1 1|0 +|/ 3043748 3044946 3044327 3041998 3045404 + gene protein_coding_gene FALSE TRUE AT1G09430.1 ACLA-3 (ATP-citrate lyase A-3) Encodes subunit A of the heteromeric enzyme ATP citrate lyase (ACL). In animals, ACL is encoded by a single gene; ACL in Arabidopsis is composed of two polypeptides, ACLA (encoded by 3 genes) and ACLB (encoded by 2 genes). The holoenzyme has an A(4)B(4)stoichiometry. Expression of both ACLA and ACLB but not of either of the subunits alone results in ACL activity. similar to ACLA-1 (ATP-citrate lyase A-1) [Arabidopsis thaliana] (TAIR:AT1G10670.2); similar to ACLA-2 (ATP-citrate lyase A-2) [Arabidopsis thaliana] (TAIR:AT1G60810.1); similar to ATP citrate synthase, small subunit [Medicago truncatula] (GB:ABE86911.1); similar to Os11g0696200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068510.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP citrate synthase, small subunit; (InterPro:IPR012250) 0.044289462244252 0.617841532024725 0.553059754197002 1 0.967070777957353 18.7506453015663 0.044289462244252 0.034302008577127
AT3G42630_at 4.90335547707193 5.96598670063347 4.70758490482435 5.07311883685139 6.28964788767944 5.80021823099579 6.22219285249185 5.76321434673609 4.06309416384408 4.49957501414418 4.3503075738205 4.67842490722699 4.16730448442419 4.56644446521716 4.50606217343771 4.93938553787665 4.65291971369594 4.77274346016523 5.06657404378838 0.233045789183794 0.224510937955325 0.23123357451209 0.239215533801939 0.224510937955325 0.231530745019985 0.234467103992289 0.228888992182439 0.243652982754079 0.228325810883549 0.233537358944442 0.228698806700036 0.232282642185016 0.236076601205209 0.229004718350142 0.228510249996922 0.231072050109395 0.230142430448382 0.228875741981109 3 3 + 14734049 14734517 14734308.091 14733236 14734843 + gene protein_coding_gene FALSE TRUE AT3G42630.1 pentatricopeptide (PPR) repeat-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G14190.1); similar to pentatricopeptide repeat protein [Capsella rubella] (GB:ABA18107.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) -0.104963456794047 -0.616266451278188 0.554050263128681 1 0.96609761742728 10.1518049613648 -0.104963456794047 0.226496944819871
AT3G18290_at 7.05638310152156 7.13816934155343 6.39300941653622 6.28545029109359 8.18250163323187 7.9850280344195 7.22786314541056 7.0352172227903 7.45506528793239 8.20689689882098 7.3614686724329 7.76105925886594 8.39404908148908 8.09708721859727 7.64838574894218 8.71387412319999 8.40881165655217 5.66201025148119 8.18122940359971 0.150675438539099 0.143099467786736 0.150591631150351 0.150080019356332 0.143636337438605 0.138393174812610 0.141738206564593 0.145283615611747 0.149958409783963 0.137829438958769 0.143425357574001 0.140248155201849 0.148362427514038 0.136955279572006 0.136990617908661 0.142314748943370 0.151471399131367 0.148169058348326 0.137222916503298 3 3|0 +|/ 6279220 6280110 6279652.222 6274001 6280516 + gene protein_coding_gene FALSE TRUE AT3G18290.1 EMB2454 (EMBRYO DEFECTIVE 2454); protein binding / zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G74770.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type; RINGv [Medicago truncatula] (GB:ABE78891.1); similar to putative E3 ubiquitin ligase [Lotus japonicus] (GB:BAF38781.1); similar to Zinc finger, RING-type; Zinc finger, CHY-type; RINGv [Medicago truncatula] (GB:ABE81983.1); contains InterPro domain Hemerythrin HHE cation binding region; (InterPro:IPR012312); contains InterPro domain Zinc finger, CHY-type; (InterPro:IPR008913); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0473990688356341 -0.615824726515148 0.554328232164368 1 0.96582510355578 15.0147396641010 -0.0473990688356341 0.0531608120697748
AT2G41760_at 6.16017225350566 6.4156362999606 5.99621588111884 6.0507346938964 6.2343135047546 6.06276971647863 5.60788975502736 5.7781188006644 6.00549251446306 6.4251243072207 6.45482757367888 6.55673895794065 6.68305076655047 5.93827945335873 6.30727913321885 6.44966667392603 6.20173735326288 6.54903327670835 6.73902216478487 0.204258937472697 0.195909424095692 0.204510196654745 0.20404138758434 0.198651806723661 0.196036815202845 0.200002006654778 0.200125713212688 0.220202755610571 0.203013556555379 0.202943721195553 0.195091985205739 0.194230454735668 0.225421963196795 0.201270236846712 0.197509849487379 0.212306847032022 0.201368294336581 0.194230454735668 2 2|0 +|/ 17430206 17431199 17430756.75 17429848 17431449 + gene protein_coding_gene FALSE TRUE AT2G41760.1 similar to PREDICTED: similar to CG8253-PA [Tribolium castaneum] (GB:XP_974547.1); similar to Os05g0387900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055427.1); contains domain UNKNOWN (PTHR13035); contains domain gb def: Expressed protein (At2g41760/T11A7.14) (PTHR13035:SF2) 0.0491255790985039 0.614818236958991 0.554961899399571 1 0.965204831351175 12.4294595185442 0.0491255790985039 0.0615839717505178
AT1G75850_at 6.80970500235995 6.67771615404054 7.12442422332163 7.11520216083832 7.5970761770669 6.72980626311421 7.04423747423178 6.54157506732293 6.48103348541764 6.45490147947823 5.90334695780438 6.25854001485506 6.54307749356758 6.18238527421464 5.90592088828617 6.47196942635133 6.99608717631035 6.6024546550185 6.74795211701914 0.210949768427043 0.194860737312799 0.193741398275096 0.198815913174134 0.198819325608411 0.21304536096232 0.198357936303423 0.193878576564315 0.205169906012358 0.204663198842393 0.201574744134547 0.198555419540234 0.196672557564482 0.209103018589724 0.202992564407226 0.193748927929742 0.197960765589472 0.201485985576935 0.204622539686554 1 0|1 /|- 28481782 28482532 28482094.5 28481429 28487589 - gene protein_coding_gene FALSE TRUE AT1G75850.1 similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:AT3G51310.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17790.1); similar to Zgc:136268 protein [Danio rerio] (GB:AAI17574.1); similar to novel protein simlar to human and mouse vacuolar protein sorting 35 (yeast) (VPS35) [Danio rerio] (GB:CAE49237.1); similar to Os03g0801600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051593.1); contains InterPro domain Vacuolar protein sorting-associated protein 35; (InterPro:IPR005378) 0.0849979117128963 0.614076118239087 0.555429392696408 1 0.964748073989345 13.4146020301734 0.0849979117128963 0.174976382833947
AT1G73970_at 5.31856713760931 5.48426870557603 5.43002659526808 5.6975155563137 6.21071759812145 5.50894678396903 5.71821719147951 5.29223134425876 4.71613591994504 5.32279586585788 4.80557626788146 4.96699743363804 5.13326835475603 5.11779366853409 4.8044802149734 5.47998944008218 4.84741852620397 5.38923914258936 5.48079497766862 0.227930110699583 0.213376100402658 0.235733826161333 0.220494797398594 0.205583491891643 0.232351886499984 0.222561026615038 0.212121249290961 0.229924695769614 0.211051583604175 0.212674790920802 0.213383826932652 0.208575039541186 0.222292411441513 0.210779169345021 0.209137431764178 0.218263825665424 0.206136635280399 0.209103647085888 1 1|0 +|/ 27822421 27823592 27823206.444 27820475 27823739 + gene protein_coding_gene FALSE TRUE AT1G73970.1 similar to Os02g0123400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045734.1); similar to hypothetical protein MtrDRAFT_AC139344g16v1 [Medicago truncatula] (GB:ABE80081.1); contains domain ARM repeat (SSF48371) 0.0766668326394832 0.613781129182231 0.555615282703706 1 0.96456665407105 10.7032301818609 0.0766668326394832 0.152145815412634
AT3G13110_at 8.92012323110813 9.19486178680192 8.98545554710208 9.04243935302006 9.00468187597676 8.87319301292574 9.23894132315428 9.4090946766101 8.72698668343803 9.04680230763403 9.07283525766217 9.02095067473727 9.04030297304234 9.21669468255174 8.6431658741068 9.27258268847124 9.08492337116769 9.1582338901614 9.0679486006537 0.101383952267137 0.0955374042444271 0.0988942790453893 0.100582723766058 0.0931561720296111 0.0990226706203664 0.098886045067656 0.0992524150595174 0.105121021798875 0.0989654946312176 0.0961404825709884 0.0925556162081224 0.0932754074401099 0.0967899873874832 0.105537028111742 0.0887593692554221 0.0893811035665632 0.0947608587679306 0.0984765570938584 3 3 - 4214967 4215415 4215194.727 4214624 4216309 - gene protein_coding_gene FALSE TRUE AT3G13110.1 AtSerat2;2 (SERINE ACETYLTRANSFERASE 1); serine O-acetyltransferase Encodes a mitochondrial serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Identical to Serine acetyltransferase 3, mitochondrial precursor (EC 2.3.1.30) (AtSAT-3) (SAT-m) (AtSERAT2;2) (SAT3) [Arabidopsis Thaliana] (GB:Q39218;GB:Q42532;GB:Q43739;GB:Q43740;GB:Q7DLZ8;GB:Q7DM01); similar to AtSerat2,1 (SERINE ACETYLTRANSFERASE 1) [Arabidopsis thaliana] (TAIR:AT1G55920.1); similar to mitochondrial serine acetyltransferase [Thlaspi goesingense] (GB:AAT38561.1); similar to serine acetyltransferase (GB:AAB02050.1); similar to Serine acetyltransferase 3, mitochondrial precursor (AtSAT-3) (SAT-m) (AtSERAT2;2) (GB:Q39218); contains InterPro domain Serine acetyltransferase, N-terminal; (InterPro:IPR010493); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Serine O-acetyltransferase; (InterPro:IPR005881); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.0489237472917301 -0.613437216379973 0.555832047963721 1 0.964355245775246 18.0890773710355 -0.0489237472917301 0.0611766993060128
AT3G27390_at 7.98420205557277 7.99256472060492 7.84229393833188 7.99244840952644 8.54445936719617 8.45692961305132 7.59858131700339 7.91123137694468 7.02042509682806 7.16948064883727 7.17128295404868 6.50453748554508 6.76084759980543 6.73677366321614 7.09502656595141 6.54180979701573 7.40826558439011 7.24963292304982 7.32868221133434 0.207268559646742 0.205614060649986 0.205620409025595 0.206369147414673 0.208515292620263 0.209485770647325 0.208484858463976 0.206430982098505 0.211068573591231 0.208245324223456 0.205071543614908 0.211257699019182 0.212095365463817 0.212930210507755 0.213345046605907 0.207811264399043 0.204004325508992 0.210062973555845 0.202209565495471 3 3 - 10134709 10135367 10135077.727 10134433 10137867 - gene protein_coding_gene FALSE TRUE AT3G27390.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G40640.1); similar to Steroid nuclear receptor, ligand-binding [Medicago truncatula] (GB:ABD28762.1) 0.0490236918947953 0.612593809099934 0.55636384761125 1 0.963837246669084 15.0935312117595 0.0490236918947953 0.0619206460024664
AT1G33230_at 7.56434595810504 7.88759845567811 7.25337588362007 7.49030008952217 8.18081272415326 7.71455660602507 7.8410160258266 7.84568735575223 6.7373245322956 7.17894698579068 7.36967033184597 7.44757938412411 7.17583550810718 7.43127680278819 7.02051437412494 7.53438872005348 7.2934882808554 6.8366184104866 7.13375057424953 0.189156142646138 0.182449167513359 0.183840072647792 0.181511514409504 0.188441998658845 0.189263252256959 0.184986212173865 0.180784936171328 0.185531949003652 0.185719160542137 0.181785142805551 0.181986492379700 0.187042528463714 0.187451273725853 0.178648303624937 0.178272495170116 0.18961534384437 0.198502092954814 0.188856059193549 1 0|1 /|+ 12047658 12049648 12048838.111 12046621 12050046 + gene protein_coding_gene FALSE TRUE AT1G33230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10430.3); similar to Os02g0106800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045630.1); similar to Os08g0152800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061007.1); similar to Predicted membrane protein (ISS) [Ostreococcus tauri] (GB:CAL54240.1); contains InterPro domain TMPIT-like; (InterPro:IPR012926) 0.0610484113796401 0.611402701620815 0.557115386594556 1 0.963106802556058 14.8623843909987 0.0610484113796401 0.106402846234905
AT4G08170_at 6.21757714923519 6.30565537601786 5.91074763417464 5.84265791465827 6.3216110723605 6.11114400994697 6.64390673008076 6.35808689853512 5.40756101450929 5.70325263511672 6.2627171668983 6.13347398095326 6.13983247419477 6.20542945503143 6.06460683948787 5.87583785257276 5.81211779216187 5.87759310431707 5.72734872347596 0.212121791877532 0.21734861021318 0.216624632814292 0.21963130560423 0.216155523522497 0.215433481223966 0.217867071907509 0.215442101630338 0.215789675825251 0.221393617402507 0.219934177355336 0.212121791877532 0.212957306491645 0.219789826810107 0.21356596939927 0.215606354231432 0.222526915579443 0.214353775728139 0.212121791877532 4 4|0 -|/ 5164068 5164767 5164383.375 5163396 5167176 - gene protein_coding_gene FALSE TRUE AT4G08170.1|AT4G08170.2 inositol 1,3,4-trisphosphate 5/6-kinase family protein Identical to Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol- triphosphate 5/6-kinase 2) (EC 2.7.1.159) (Inositol 1,3,4- trisphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (AtItpk-2) (ITPK2) [Arabidopsis Thaliana] (GB:Q9SUG3;GB:Q3EA71;GB:Q93VQ8); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G33770.2); similar to Os10g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064019.1); similar to Os03g0726200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051133.1); similar to Putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAK00417.2); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR008656)|Identical to Inositol-tetrakisphosphate 1-kinase 2 (EC 2.7.1.134) (Inositol- triphosphate 5/6-kinase 2) (EC 2.7.1.159) (Inositol 1,3,4- trisphosphate 5/6-kinase 2) (Ins(1,3,4)P(3) 5/6-kinase 2) (AtItpk-2) (ITPK2) [Arabidopsis Thaliana] (GB:Q9SUG3;GB:Q3EA71;GB:Q93VQ8); similar to inositol 1,3,4-trisphosphate 5/6-kinase family protein [Arabidopsis thaliana] (TAIR:AT4G33770.1); similar to Os10g0103800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064019.1); similar to Os03g0726200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051133.1); similar to Putative inositol 1,3,4-trisphosphate 5/6-kinase [Oryza sativa (japonica cultivar-group)] (GB:AAK00417.2); contains InterPro domain ATP-grasp fold; (InterPro:IPR011761); contains InterPro domain Inositol 1, 3, 4-trisphosphate 56-kinase; (InterPro:IPR008656) 0.0494819557430204 0.611311452663964 0.557172985066483 1 0.96305089763156 12.0435092852442 0.0494819557430204 0.0643761824452838
AT3G01590_at 7.64574823309778 8.12390905908919 8.00504995958281 8.10125441339897 7.96882513337887 7.67907231465774 7.66869189479843 7.63558825493598 6.42724255629075 6.93837310848576 6.77919385540897 6.70361984939038 6.82388840163659 6.77340967899122 6.75628928265411 6.53254005167665 6.87294388885534 6.49287708822005 6.943619286166 0.223043414108784 0.222321373415302 0.222436355882768 0.219366611213406 0.22255894396709 0.225172988558255 0.226920977920544 0.234054259987679 0.243319445691736 0.220174551389262 0.221674596920046 0.221536163111088 0.219699561723282 0.238452659206522 0.229918658030282 0.219531502482755 0.241284892788099 0.239828866493382 0.223287526290844 3 0|3 /|+ 227524 228305 227907.111 225923 228630 + gene protein_coding_gene FALSE TRUE AT3G01590.1|AT3G01590.2 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT5G14500.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE86317.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.058583186615456 0.611297696029329 0.55718166887405 1 0.96304247009889 14.5968125307433 0.058583186615456 0.0983440313233726
AT3G08030_at 9.03719529817335 9.56934381067444 8.1073206786101 8.39287284888428 9.38828007441937 9.4615355727539 9.36114307195403 9.56306148485899 9.71081250199745 9.30281655717818 10.2276300694082 10.3230626752901 10.0033971643341 9.73090969100216 10.7489003164366 9.33749885999098 9.46583525864645 9.9534075073857 9.64653201808367 0.121979716454715 0.115993753396868 0.140605531777006 0.136147379351356 0.11811371193399 0.119640527734937 0.116316631680381 0.121046319891160 0.126683895734988 0.118215827184836 0.117714415425190 0.116199770299324 0.116134517689943 0.121112089960869 0.118818436382828 0.115993753396868 0.125443952942452 0.118546219732313 0.115993753396868 3 3 + 2564920 2565800 2565487.182 2564039 2566008 + gene protein_coding_gene FALSE TRUE AT3G08030.1|AT3G08030.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G41800.1); similar to Os03g0807700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051644.1); similar to unknown [Ricinus communis] (GB:CAB02653.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain Protein of unknown function DUF642; (InterPro:IPR006946) -0.062370227844801 -0.610475385395762 0.557700890479455 1 0.96253902284235 18.8737027143235 -0.062370227844801 0.110925136521576
AT1G14450_at 9.38514854075545 9.45249899423007 9.40187681869403 9.4168477912456 9.66432344284729 9.18775994549182 9.52197413381696 9.59453154984047 9.2773152096554 9.29119666074822 9.47379703027877 9.56063121583997 9.3859437470016 9.55112494794548 9.42104718865065 9.45327439947427 9.11463887621954 9.42730959330045 9.16332459216418 0.0975557785502903 0.0963242962016643 0.0964000879501307 0.0954761585914872 0.095686765067848 0.0941898522125152 0.0993290335344013 0.0977618218697112 0.0972923309940528 0.0984027205202607 0.0983967056249622 0.0968118479980857 0.101033829314986 0.100256731198129 0.0963527830018472 0.0968712543187886 0.103182874569745 0.102173435970165 0.0944620391826505 1 1 - 4947344 4947528 4947429.636 4946213 4947571 - gene protein_coding_gene FALSE TRUE AT1G14450.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G02510.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15588.1) 0.0543445411125971 0.609100923244918 0.558569374024271 1 0.961698905516685 18.7868283332959 0.0543445411125971 0.084272034877998
AT1G16880_at 10.7206255526012 10.5554507077393 10.8360247136051 10.6417283922746 10.4014450380112 10.280304150102 10.9333001290628 11.0176871396368 10.8052551742520 10.8765322916463 11.1796728274354 11.2824227010808 11.1811260304438 11.0089234661762 11.1305656244574 11.3847555960819 11.0949993010847 10.7913416611669 10.6339973402743 0.0938950603811497 0.0927586620960099 0.095535847479119 0.095899335293624 0.0909106727058285 0.0991961996298079 0.0962127309297252 0.093114167637119 0.112668483836245 0.0949896604069572 0.0914624216465144 0.0926811264097414 0.0938057424039628 0.104530019193726 0.095644840663625 0.0937013076594599 0.0940722750716842 0.0917476912893705 0.095515208185803 1 1|0 +|/ 5774565 5776085 5775346.714 5773585 5776301 + gene protein_coding_gene FALSE TRUE AT1G16880.1|AT1G16880.2 uridylyltransferase-related similar to ACT domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G04740.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58487.1); similar to Os08g0242700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061342.1); similar to Os12g0152700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066177.1); contains domain Regulatory domain in the aminoacid metabolism (SSF55021) 0.0464536617524498 0.609092368887158 0.558574781721669 1 0.961693682201336 21.6251478127367 0.0464536617524498 0.0509939188967868
AT4G31600_at 5.48903534393476 6.17256472816723 5.57550731568286 5.72868742683662 4.81538773031536 5.06220753109241 4.46950439264646 4.8502828943944 4.1489583565508 3.78508422802324 3.96208361730808 4.76129910407114 3.84755937412164 4.06533851808383 4.15079907398922 3.73618677138244 4.15564708742732 4.19386109862051 4.10333013586359 0.224616931836041 0.224804054429640 0.227644918825149 0.235460307357955 0.221727079527965 0.232150234056727 0.225012984507636 0.221727079527965 0.238045456495918 0.2265219498113 0.223990517656555 0.230455832500975 0.223723480179784 0.228403465333539 0.227959735748434 0.223709526354893 0.229224909854696 0.226296560975947 0.221727079527965 4 4|0 -|/ 15315345 15316061 15315751.4 15314890 15317141 - gene protein_coding_gene FALSE TRUE AT4G31600.1|AT4G31600.2 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32272.1); similar to Os06g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057020.1); similar to hypothetical protein DDBDRAFT_0202972 [Dictyostelium discoideum AX4] (GB:XP_643057.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32272.1); similar to Os06g0188100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057020.1); similar to hypothetical protein DDBDRAFT_0202972 [Dictyostelium discoideum AX4] (GB:XP_643057.1); contains InterPro domain UAA transporter; (InterPro:IPR013657) 0.0733699591712075 0.609028262065318 0.558615308260862 1 0.96165454051683 9.33117437243613 0.0733699591712075 0.144434707536743
AT3G50910_at 6.5898819135841 6.83600783084947 7.79368434930354 7.48052929801481 6.30415896402025 6.66219666394601 6.78401498672231 7.15932095199453 5.49103547890718 5.84818501624103 5.35049643765805 5.40178706607862 5.26905019377098 5.71223998807901 5.4220226988754 6.42869196369848 5.94100743330604 5.39226155792629 5.78113736348956 0.254041603724867 0.253669885130612 0.250891265515676 0.251678433797496 0.250891265515676 0.256997500045635 0.251998725791187 0.250932776644163 0.258804863111076 0.250891265515676 0.251568127421033 0.255150316430334 0.251593491221642 0.263023988257056 0.255522053182297 0.250891265515676 0.250891265515676 0.253937488638433 0.252166728920381 3 3 + 18932438 18932937 18932690.455 18930494 18933219 + gene protein_coding_gene FALSE TRUE AT3G50910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G66480.1); similar to hypothetical protein [Thellun (GB:ABB45854.1); contains domain no description (G3D.3.40.50.300) 0.0628723062892012 0.608433645896836 0.558991288766478 1 0.96129166455184 12.6119646799561 0.0628723062892012 0.113174259274042
AT2G36720_at 7.64812947698265 7.40024821268713 7.66021503286354 7.21148714594351 7.77589452173925 7.52254978890423 7.55212931818727 7.25125825116573 6.6062940267778 6.98196514744747 6.38014530097715 7.1187309736745 6.64803013545009 6.66283363909631 6.51629117089349 7.02037668846379 6.85839942070078 6.61742901989767 7.20850991371523 0.192193534980277 0.187193262471213 0.188004650099684 0.194600345057429 0.191210971659607 0.192662899002916 0.191969252876044 0.196712813707484 0.199346326386947 0.205915578093998 0.200389631706741 0.1908618222941 0.192548970946679 0.199957233103112 0.192341219330104 0.187529597087778 0.205258198611437 0.200370875267222 0.194941237316451 2 2|0 +|/ 15404863 15406187 15405599.2 15400150 15406497 + gene protein_coding_gene FALSE TRUE AT2G36720.1 PHD finger transcription factor, putative similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G27980.1); similar to putative PHD zinc finger protein [Ipomoea trifida] (GB:AAS79577.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0624407556978366 -0.608408145656212 0.559007416031691 1 0.961276109752814 14.3327569217047 -0.0624407556978366 0.111819132799070
AT3G15660_at 8.82869466014278 8.62366649600877 8.73149828020726 8.5380043799165 8.87326952091567 8.57765051808583 8.64707557914484 8.58583710189001 8.47367456587287 8.25477771043161 8.59774913875953 8.42284083333159 8.54881697111018 8.55918572276396 8.62188300659532 8.46580723729844 7.9481162717937 8.1960649226648 8.25297235060824 0.119758339922110 0.119380649576236 0.120567516550284 0.120974337799392 0.130293099361044 0.126781160974775 0.124807499954567 0.117027938267461 0.133101616631976 0.129090800383710 0.120413262342495 0.120770472050666 0.126569333366660 0.119486645604796 0.123924732282926 0.117003505610199 0.152949225477883 0.124807406412335 0.122150952585774 3 3|0 -|/ 5308288 5309366 5308734 5307951 5309588 - gene protein_coding_gene FALSE TRUE AT3G15660.1|AT3G15660.2 glutaredoxin family protein|electron carrier/ protein disulfide oxidoreductase Identical to Monothiol glutaredoxin-S15 (AtGrxS15) (GRXS15) [Arabidopsis Thaliana] (GB:Q8LBK6;GB:Q9LW13); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G04950.1); similar to glutaredoxin [Arachis hypogaea] (GB:ABE68717.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) 0.050851843110084 0.607290815976333 0.559714318557773 1 0.960595136556444 17.0493118447109 0.050851843110084 0.0714816703247452
AT4G12800_at 13.3944846995905 13.3751093871071 13.3145558548025 13.4346283919303 13.5188947093263 13.1261132324441 13.7076637706615 13.6994981759884 14.1860008900943 13.9539344603779 14.4272000320742 14.4157026399703 14.2924790080921 14.3612603021869 14.3661127402363 14.3553902404511 14.0009473715583 14.4478191951541 13.9692699085221 0.0576077975182473 0.0600897306798592 0.0652208357973646 0.0651131425343113 0.0587199360787771 0.0682145891813242 0.0585176042552339 0.0585939916251823 0.062000937579501 0.0612362614510691 0.0574629803232813 0.0576186437447601 0.0605374503014191 0.0581791569081628 0.0574629803232813 0.0574629803232813 0.0615176243937493 0.0581045206143561 0.060413129186675 4 4 + 7521601 7522465 7522189.182 7521319 7522667 + gene protein_coding_gene FALSE TRUE AT4G12800.1 PSAL (photosystem I subunit L) Encodes subunit L of photosystem I reaction center. Identical to Photosystem I reaction center subunit XI, chloroplast precursor (PSI- L) (PSI subunit V) (PSAL) [Arabidopsis Thaliana] (GB:Q9SUI4;GB:Q9ST32;GB:Q9SU06); similar to photosystem I subunit XI [Nicotiana attenuata] (GB:AAO85557.1); contains InterPro domain Photosystem I reaction centre, subunit XI PsaL; (InterPro:IPR003757) 0.0506606135031324 0.605920057108671 0.560582261049224 1 0.959761264048155 27.6312513748381 0.0506606135031324 0.0711708807400132
AT2G24360_at 10.0251764304578 10.1976022247037 10.1220324987903 10.2103414938429 10.3553368359874 9.9236932896477 9.64196043124839 9.6063320418785 10.2068766956599 10.2593466902515 10.1681880991353 10.1173494178635 10.1402049044213 10.2215833928312 9.57796907824978 10.1490459954939 10.0284070734840 9.80425840789855 10.1460953216672 0.0869588412238529 0.0856923958597312 0.0877550426276455 0.0856923958597312 0.0880341503961195 0.0900607686487811 0.0915719349675896 0.0863570352841283 0.09688508573719 0.0881683905498988 0.0873908805543961 0.0856923958597312 0.0856923958597312 0.087932652838318 0.0917587900057906 0.0857790962303969 0.0900546037659929 0.0952220182732204 0.0856923958597312 2 2 - 10371830 10372470 10372140.818 10371531 10373982 - gene protein_coding_gene FALSE TRUE AT2G24360.1 serine/threonine/tyrosine kinase, putative similar to kinase [Arabidopsis thaliana] (TAIR:AT4G31170.3); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06448.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06449.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0534264039038104 0.605365841880023 0.560933400804317 1 0.959424606025216 20.1253004218355 0.0534264039038104 0.0821079488747867
AT1G23780_at 8.16583115122585 8.27468441932158 8.40130767619138 8.35782198220396 8.98807514768062 8.47728540724076 8.27251597029091 8.49395779306896 7.70720771168051 7.93806297651302 7.60160493646039 7.57674484827138 8.09459073807519 7.81376861314654 7.1642769720065 7.86319171373893 7.37809176916526 7.57515978987716 7.66993045363398 0.155538714912612 0.158681435888275 0.155728926971359 0.159164728464126 0.155377892238019 0.164546017689294 0.167416921198378 0.157623354788336 0.175623219604591 0.166011526889990 0.163535973371435 0.158701016889174 0.157244538032466 0.164993932742428 0.159788475916954 0.155377892238019 0.165634624639755 0.169283772642999 0.15836199725727 1 1 - 8407067 8407601 8407288.727 8406675 8408514 - gene protein_coding_gene FALSE TRUE AT1G23780.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT1G23770.1); similar to Helix-loop-helix DNA-binding domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94799.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0580350892512602 0.605232196073305 0.561018095041129 1 0.959343464881512 16.1315161366706 0.0580350892512602 0.0984561928384058
AT2G43680_at 9.6478489655915 9.43468956931257 9.54860479492338 9.47940006123276 9.94018639342737 9.6798402751874 8.65739665830802 8.45529847457898 9.61372447676716 9.45844443593957 9.32861371093093 9.23183937091215 9.45152581172902 9.13720284077558 8.71688244516817 9.23989908429185 8.79634614845434 9.04915933829074 9.82392130652443 0.121163420205712 0.115651844588347 0.120038207148301 0.119583500147773 0.116885761471963 0.115259943996477 0.115746942060720 0.113992610260229 0.125326328822581 0.111550556813676 0.111550556813676 0.113087810151385 0.111550556813676 0.123315777517356 0.123263855913477 0.115146189723181 0.132337505479431 0.123494499404415 0.111550556813676 2 2 + 18118067 18118609 18118326.182 18115425 18118908 + gene protein_coding_gene FALSE TRUE AT2G43680.1|AT2G43680.2 IQD14; calmodulin binding similar to IQD13 (IQ-domain 13), calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G59690.1); similar to P0696G06.23 [Oryza sativa (japonica cultivar-group)] (GB:BAC06266.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.0500514924935036 0.605017225114375 0.561154342196307 1 0.959212982574137 18.7308899825183 0.0500514924935036 0.0689726509463267
AT3G05370_at 5.35694743007929 5.48778635824206 5.80203002047211 5.40714976702144 6.05524148795185 5.63767890957836 5.43954197677906 4.76307757712993 4.8644723869974 5.64165847032114 5.13169976196209 5.46500093110421 5.0433907807603 5.30173510667509 4.97284809191835 5.99555280594497 5.4096580085597 4.66473268408962 6.16956059945616 0.194226359619138 0.185723874293014 0.188810302452556 0.187522226418742 0.18861521923844 0.190223486979653 0.188659482591348 0.188164462490546 0.200285955724129 0.193045105319606 0.192629229761152 0.188077820724359 0.190868388922811 0.192079289103407 0.190229230186885 0.186082424747173 0.193003550829180 0.188669553370604 0.195479305933957 3 3 - 1536153 1536627 1536406.273 1536020 1538725 - gene protein_coding_gene FALSE TRUE AT3G05370.1 disease resistance family protein similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71390.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT1G71400.1); similar to disease resistance family protein / LRR family protein [Arabidopsis thaliana] (TAIR:AT3G05360.1); similar to Hcr2-p3 [Lycopersicon pimpinellifolium] (GB:AAX19025.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0766000815751222 0.604453999394758 0.561511400997753 1 0.958871318121028 10.8970022360576 0.0766000815751222 0.155268886827501
AT4G21150_at 9.12108575872309 9.28671397099599 8.90785320942424 9.1887324744475 8.8926054187161 8.24648669025037 8.2937904180268 8.69863431181877 7.98151317331681 7.34817016823113 7.60204948344146 8.22570974617736 7.5190183676151 7.81435460174823 8.11264937581376 7.58447861783559 7.44355717066526 7.57320168651648 7.31546753042044 0.223467604566781 0.220456189026131 0.240336625662220 0.220456189026131 0.222769964135758 0.228595346996789 0.226722507637380 0.220456189026131 0.231143814845294 0.225302387433703 0.223452453679529 0.222006176727934 0.233228833268279 0.228571741976063 0.224693229263023 0.227015355180469 0.249324107255152 0.235748301811873 0.220456189026131 4 4|0 +|/ 11282409 11283275 11282941.556 11278439 11283858 + gene protein_coding_gene FALSE TRUE AT4G21150.1 ribophorin II (RPN2) family protein similar to At4g21150 [Turritis glabra] (GB:ABF47539.1); similar to Os01g0911200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045159.1); contains InterPro domain Ribophorin II; (InterPro:IPR008814) 0.07242854527779 0.603858798259142 0.561888872415864 1 0.958510571858322 16.4708682841584 0.07242854527779 0.143509575592505
AT1G22540_at 6.35723029117122 6.9264109217521 5.96031091741238 6.74594737883683 7.0370821026641 6.5636491923882 6.4179692225754 6.65975174526145 6.38069232899867 6.70740548918683 6.68868720193964 6.25574625615503 6.74028684372997 7.28035971460989 6.5421942134387 6.36313883940718 6.01227189514443 6.83253962159565 6.10156930241548 0.202094359982120 0.213216985300778 0.209616080552839 0.208950560067678 0.198946493407528 0.216203189633844 0.199347876196892 0.198946493407528 0.202239750322075 0.201708667395593 0.198946493407528 0.198946493407528 0.201708241426263 0.203792488254002 0.202658454562152 0.201600618039815 0.215280180524329 0.199257451211828 0.211722128649136 1 1 + 7965641 7966152 7965918.545 7964031 7966425 + gene protein_coding_gene FALSE TRUE AT1G22540.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72130.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G72140.1); similar to putative oligopeptide transporter [Oryza sativa (japonica cultivar-group)] (GB:BAD82719.1); similar to OSJNBb0008G24.20 [Oryza sativa (japonica cultivar-group)] (GB:BAB86548.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.0896271095104508 0.6038245316322 0.561910608445828 1 0.958489813012497 13.0765233615675 0.0896271095104508 0.19144169728505
AT2G26140_at 8.27167520724667 8.38342491056338 8.42355752164518 8.47118758717173 8.79946731971592 8.12462738252244 8.8062496062995 8.62315497967292 7.77007911885194 7.84150671532864 7.87066307509828 8.10341345633127 8.22561206659152 7.9194283371374 7.75472451443807 8.29514296167035 7.79308559860504 7.80837772769527 7.71037581197799 0.173183263846595 0.177684636947229 0.183913146105043 0.173183263846595 0.17786263211954 0.188067879489596 0.174522438085425 0.173183263846595 0.191114832819273 0.174887512425195 0.177866468129484 0.177899491358197 0.179975886957671 0.195851557517615 0.181084872600292 0.178249115779862 0.184305673865539 0.177084616305898 0.173183263846595 2 2 - 11139137 11139548 11139343.091 11138656 11142402 - gene protein_coding_gene FALSE TRUE AT2G26140.1 FTSH4 (FtsH protease 4); ATP-dependent peptidase/ ATPase/ metallopeptidase encodes an FtsH protease that is localized to the mitochondrion similar to FTSH11 (FtsH protease 11), ATP-dependent peptidase/ ATPase/ metallopeptidase [Arabidopsis thaliana] (TAIR:AT5G53170.1); similar to DNA repair protein RadA; Peptidase M41, FtsH [Medicago truncatula] (GB:ABE94111.1); similar to ftsH-like protease [Pisum sativum] (GB:CAG25608.1); similar to putative FtsH protease [Lycopersicon esculentum] (GB:AAP32310.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Peptidase S16, lon protease; (InterPro:IPR001984); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.0654512643139564 0.603500774298276 0.562115998222797 1 0.958293732652174 16.3605646556458 0.0654512643139564 0.122818737419417
AT2G39020_at 5.06755707110438 5.51035191194159 4.95304538176394 4.89754321464769 5.30666680115708 4.91122979705912 5.84152582716276 5.89469259869963 4.24931235383982 5.42632771977042 5.91046087443116 5.68692728915347 5.5436369802902 5.3963535797209 5.61019069011824 5.3236724294733 4.8567770751005 5.08243719474642 5.27530903372445 0.233406049033061 0.233790789268545 0.241588738959116 0.239091174201359 0.232676733413197 0.255798594514488 0.239052320823258 0.241116636143978 0.256873815123917 0.238035656383091 0.23208728716756 0.236705486452048 0.236721065472677 0.237038641527431 0.233846241527268 0.236832701646335 0.257805873315286 0.253001450517943 0.237471297897470 2 2 + 16302591 16303131 16302844 16302393 16303406 + gene protein_coding_gene FALSE TRUE AT2G39020.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase (GNAT) family protein [Arabidopsis thaliana] (TAIR:AT2G39030.1); similar to GCN5-related N-acetyltransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94015.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.0593766209428778 -0.603218738724716 0.562294955040235 1 0.958122998779458 10.5028049337291 -0.0593766209428778 0.103593836431226
AT4G36790_at 5.86704183566408 6.61075011846329 5.40336904482392 5.66404926589095 6.28176580831706 6.17747908480291 4.7532391341769 4.14311215783905 5.03274591726632 5.1786015420738 4.74962010879014 4.7421733150009 4.40345641158749 4.756183041862 4.1329622243401 4.97254880462324 4.51062068204852 4.4680355070847 4.68206618644656 0.264121812883894 0.254734396974782 0.254861117522078 0.255075278176842 0.249232761873632 0.262258601756138 0.260427934937994 0.257238624884128 0.267799903178693 0.260432826110009 0.251407406826006 0.253935403831341 0.261516293593458 0.264839895931267 0.252501946153212 0.252115567806695 0.252206911216893 0.264796625930807 0.256582945168261 4 4 + 17337718 17338232 17337971.818 17336177 17338376 + gene protein_coding_gene FALSE TRUE AT4G36790.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT2G18590.1); similar to membrane transporter PFB0275w-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC82966.1); similar to Os07g0208900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059164.1); similar to Os03g0809100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051655.1); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain Major facilitator superfamily MFS_1; (InterPro:IPR011701) 0.0828043930388961 0.602310660225818 0.562871369556078 1 0.95757377602489 10.3908114198370 0.0828043930388961 0.173416561111684
AT3G01660_at 6.92507081794449 7.56484608244185 7.40239150744204 7.39010786498003 7.85511954798456 7.75048567803268 7.91409792522205 7.72976447000718 6.13317683302995 6.57080716828456 6.21029347259277 6.51909905018643 6.28763982727946 6.16509576839554 6.41050700524132 7.00293937087743 6.96968361458299 5.85311476289144 6.39631071992645 0.238146880690628 0.226495485314109 0.223496139407907 0.227054601416104 0.227341915281903 0.231862038914192 0.228764924009323 0.225678945570979 0.240108083821839 0.223496139407907 0.226605935499539 0.223496139407907 0.228183747241204 0.229738290435987 0.232292764962208 0.228487246473623 0.244192330411313 0.23560288205946 0.224497580336881 3 3 + 245777 246363 246074.182 245485 246515 + gene protein_coding_gene FALSE TRUE AT3G01660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29590.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51842.1); similar to Os04g0481300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053109.1); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) 0.0633065138157685 0.601995184713627 0.563071700890327 1 0.95738314715408 13.9635162448000 0.0633065138157685 0.116653522140339
AT1G23190_at 9.94541259767098 9.97870589871546 10.2230660937036 10.2624383913682 9.7248431195962 9.56745989891999 10.5898627654519 10.4792369913342 9.22261337893477 9.88836155279732 9.90495441926967 10.0161590431310 9.85909344501414 9.88078833699836 9.9935760950056 9.81893086260087 10.0120304267732 9.90507277378867 9.49120031968506 0.106742269030165 0.10515732828638 0.105243757471170 0.10515732828638 0.106069743543679 0.109124126431771 0.106856630795743 0.107219789846445 0.125432851007565 0.107226027312721 0.10515732828638 0.10515732828638 0.105860645444286 0.111646827830523 0.107942139294385 0.10515732828638 0.110755036740166 0.115061868839179 0.106829298751410 1 0|1 /|+ 8223211 8224134 8223687.25 8219858 8224458 + gene protein_coding_gene FALSE TRUE AT1G23190.1 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative Identical to Probable phosphoglucomutase, cytoplasmic 1 (EC 5.4.2.2) (Glucose phosphomutase 1) (PGM 1) [Arabidopsis Thaliana] (GB:O49299;GB:Q9LR42); similar to PGM (PHOSPHOGLUCOMUTASE) [Arabidopsis thaliana] (TAIR:AT5G51820.1); similar to phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative [Arabidopsis thaliana] (TAIR:AT1G70730.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9ZSQ4); similar to cytosolic phosphoglucomutase [Populus tomentosa] (GB:AAR83345.1); similar to Phosphoglucomutase, cytoplasmic (Glucose phosphomutase) (PGM) (GB:Q9SM60); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; (InterPro:IPR005845); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; (InterPro:IPR005844); contains InterPro domain Phosphoglucomutase/phosphomannomutase C terminal; (InterPro:IPR005843); contains InterPro domain Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; (InterPro:IPR005846); contains InterPro domain Phosphoglucomutase/phosphomannomutase; (InterPro:IPR005841) 0.0429572853937443 0.598944264440851 0.565011182142336 1 0.955544303073679 19.8253202658259 0.0429572853937443 0.0344661994872628
AT4G35985_at 5.54392644470447 5.62497782969423 5.28364789446274 5.31838452654728 4.61651668819542 5.01552572963736 4.43835063666475 4.48022125890423 4.35834153474378 4.61928470299745 4.17840665298007 3.68856212737516 4.03984439213687 4.61574187472888 4.02562701441854 4.30795824599785 4.27768294055996 4.48126297916021 4.03825001333356 0.195711419085409 0.199248112810145 0.193073472328013 0.200309081737054 0.182509390516452 0.193304309074237 0.19013203405515 0.191967492641282 0.183404895085544 0.200762483670750 0.182509390516452 0.185299510549219 0.186313491955245 0.185904484510112 0.199226453575019 0.185070311326868 0.196399435219202 0.190801502992401 0.186283634480058 4 4 - 17032327 17032971 17032582.727 17032271 17033865 - gene protein_coding_gene FALSE TRUE AT4G35985.1 senescence/dehydration-associated protein-related similar to ERD7 (EARLY-RESPONSIVE TO DEHYDRATION 7) [Arabidopsis thaliana] (TAIR:AT2G17840.1); similar to Senescence-associated [Medicago truncatula] (GB:ABE77914.1); contains InterPro domain Senescence-associated; (InterPro:IPR009686) -0.0500449856932307 -0.598800971035037 0.565102367977423 1 0.955458147215159 9.31044947382362 -0.0500449856932307 0.0710867873867012
AT4G19040_at 7.43451010643653 7.55507815246711 8.28624496734548 7.78981597064204 8.24782356932177 7.68790887722305 8.44074688208021 8.0280574832168 7.33147780104751 7.66108943116772 7.34877618713603 7.37480675419382 7.85501783053337 7.5369941169549 6.44820879288027 7.62376324692018 7.67510416626282 7.71017551042716 7.31950018195712 0.191763691315413 0.190008718185074 0.194025431357563 0.196942290078153 0.195132664570593 0.196216089152965 0.19979023081292 0.200048157612102 0.208946108686557 0.194314353627815 0.198804273876125 0.190008718185074 0.192889472353462 0.19369254789293 0.209395248507964 0.193077557760647 0.214849830683428 0.203390626370047 0.202711963911142 4 4 - 10431830 10432874 10432223.9 10431531 10437436 - gene protein_coding_gene FALSE TRUE AT4G19040.1 EDR2 (enhanced disease resistance 2); lipid binding Encodes a PH and START domain-containing protein that mediates resistance to pathogenic fungi. Resistance requires salicylic acid signalling. Mutants are resistant to E. cichoracearum. Expressed throughout plant tissues and possibly localized to membranes /mitochondrion. similar to pleckstrin homology (PH) domain-containing protein / lipid-binding START domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G45560.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10188.1); similar to START domain-containing protein [Poa pratensis] (GB:CAH10187.1); similar to pleckstriny domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47745.1); contains InterPro domain Protein of unknown function DUF1336; (InterPro:IPR009769); contains InterPro domain Pleckstrin-like; (InterPro:IPR001849); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) 0.0738001055111897 0.598584511707733 0.565240129419844 1 0.95532803567391 15.3757540662855 0.0738001055111897 0.149348822286215
AT3G02750_at 8.30497394285776 8.31149097403325 7.95502750260317 8.10220879153127 8.42589303413638 8.58653398544124 8.70653396361931 9.1079808647167 8.4937843294956 8.27987988932985 9.09424096947642 8.95312022069842 9.07542413865341 8.94590996101932 8.40339017268387 8.9507975211724 8.86978772187661 8.48835469145142 8.43622452589923 0.138269973533787 0.139107600583544 0.139486899120777 0.143834648561993 0.134587178771970 0.139446726098437 0.137023995676762 0.137239540546417 0.148740070561179 0.135847652350786 0.136186993357725 0.136571041039017 0.133017314751577 0.139864753675366 0.137038436344002 0.135618740041575 0.14642772529038 0.142928368248461 0.138251741431559 3 3 - 593762 594258 594005.636 593214 596527 - gene protein_coding_gene FALSE TRUE AT3G02750.1|AT3G02750.2|AT3G02750.3 protein phosphatase 2C family protein / PP2C family protein|protein phosphatase type 2C similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT5G36250.1); similar to protein phosphatase 2c [Medicago sativa] (GB:AAV73837.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0520014092543435 0.598296200294839 0.565423649515590 1 0.955154801256074 17.0630425938027 0.0520014092543435 0.0790520699829967
AT4G15690_at 5.73714041976532 6.32384009365841 5.57284952356159 5.96826675548318 6.38541722273622 6.44962294760336 6.16728878523173 6.58510606893811 8.42616650087765 7.79545543876636 8.4960209754185 8.27854182295505 6.65919443874789 7.26471843051624 8.38595036134035 7.33238301452188 7.4725080351081 8.29997775541213 7.2001746715941 0.180807124143522 0.173919480729585 0.181916596436933 0.178635871551530 0.174055076545941 0.171472254888118 0.174528055858933 0.173360764447806 0.186499610570982 0.182917009153512 0.189130024154630 0.184760604114269 0.173876449196955 0.175768547776375 0.184356901611263 0.174837930435536 0.189578692752080 0.187486210290993 0.1732355584899 4 4 + 8934477 8934726 8934583.545 8934322 8934919 + gene protein_coding_gene FALSE TRUE AT4G15690.1 glutaredoxin family protein Identical to Monothiol glutaredoxin-S5 (AtGrxS5) (GRXS5) [Arabidopsis Thaliana] (GB:O23420); similar to glutaredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G15680.1); similar to glutaredoxin family protein [Musa acuminata] (GB:ABF69994.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-like, plant II; (InterPro:IPR011905) -0.0714542061895769 -0.598240185026496 0.56545930909633 1 0.95512115283529 13.9391551727882 -0.0714542061895769 0.142627382316845
AT2G46580_at 7.20929355759641 6.84914197342613 7.16131242019886 7.13857413698884 7.99494697777618 7.36546317303616 7.409380564012 6.84378070415183 7.07566800134583 7.20221585346709 7.436602297645 7.14673732850956 6.48267814772039 7.11504655733297 6.98275878472418 7.05725226434628 6.99933362093237 7.06256941851885 7.37669576702868 0.203388298305582 0.192774442786179 0.205494014919264 0.207590757349318 0.19367900752548 0.197261749615516 0.204501880572446 0.190803426394051 0.200911955951184 0.211015474296906 0.197929182717894 0.197344495859418 0.194759206057967 0.197969262181075 0.195007229869731 0.193643736306899 0.215455183540921 0.202473422748976 0.193554162628383 2 2|0 -|/ 19136534 19137514 19137044.4 19136313 19137667 - gene protein_coding_gene FALSE TRUE AT2G46580.1 pyridoxine 5'-phosphate oxidase-related similar to hypothetical protein alr4036 [Nostoc sp. PCC 7120] (GB:NP_488076.1); similar to Os03g0115500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048753.1); contains InterPro domain Pyridoxamine 5' (InterPro:IPR000659); contains InterPro domain Pyridoxamine 5' (InterPro:IPR011576); contains InterPro domain FMN-binding split barrel; (InterPro:IPR009002); contains InterPro domain Pyridoxamine 5-phosphate oxidase, FMN-binding; (InterPro:IPR012349) 0.0771770361945432 0.598119091010665 0.565536402494238 1 0.955048421384184 14.3732694432717 0.0771770361945432 0.159208339597398
AT1G27150_at 7.10999024008 7.45348920319774 7.1056731705149 7.17121809875014 8.42650778560113 7.8028288044018 7.88421780516609 7.57211299011881 7.69197877482307 7.69169313955824 7.35370004108507 7.45234390916353 7.76198103103982 7.57493278230934 6.8774966484532 7.54032026858 7.59731292435379 7.37956745474361 7.72069824482179 0.180468458687401 0.186359151654634 0.197552946101363 0.186745960951114 0.180210332727482 0.183362370039553 0.175847616300842 0.181436726298030 0.192551951733484 0.182445960275358 0.191813264043372 0.182471713194727 0.176914998702937 0.181798335093514 0.183874648721874 0.187099757076048 0.187778058676838 0.184328303878859 0.179181046461480 1 0|1 /|+ 9430952 9431856 9431451.111 9429034 9432261 + gene protein_coding_gene FALSE TRUE AT1G27150.1 binding similar to binding [Arabidopsis thaliana] (TAIR:AT1G27110.1); similar to expressed protein, having alternative splicing products [Oryza sativa (japonica cultivar-group)] (GB:AAT81727.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0688227160459951 -0.597684482513318 0.56581314137232 1 0.954787497669576 15.1375865633290 -0.0688227160459951 0.135012870413952
AT3G26590_at 6.34044057076351 6.32167971416825 7.15516829689131 6.50866951291558 6.11058147706054 5.40333972461284 6.42856754593773 5.81406022602113 4.11532330649016 5.13466065299591 4.54328382753161 4.82618407192258 5.16366994827769 5.22714670696595 4.00096731546236 5.04367390467653 5.46202218659109 4.00080516684092 4.76071040926662 0.230904073862675 0.231509343128804 0.233260832721479 0.223322324869770 0.227827495559956 0.224775950538369 0.239001986559211 0.228200232246546 0.229515736015392 0.231352934719537 0.229826105840532 0.226908991432679 0.232202709041223 0.227233762030054 0.241334299204839 0.223322324869770 0.231108936855274 0.238921757771565 0.228419564138846 3 3 - 9763378 9764019 9763778.455 9762937 9766552 - gene protein_coding_gene FALSE TRUE AT3G26590.1 MATE efflux family protein similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT5G38030.1); similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G23300.1); similar to integral membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD87151.1); similar to Os08g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062445.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.0907452117150523 0.597527888877727 0.565912871974682 1 0.954693526779742 10.9871636821886 0.0907452117150523 0.197018215671659
AT3G18440_at 6.81686247540472 6.6366432543507 6.19406598670091 6.11669562319351 6.0298624926025 5.94385106100247 5.68226398468205 6.19627442993938 5.31202266127211 5.16735237382357 5.42370409622938 5.40137133279716 5.51374343476124 6.23567112167702 5.89556316036681 5.36934271923647 5.66298658291215 5.4731539904889 5.26094487156246 0.196492658107218 0.192369400042945 0.194798787465494 0.192369400042945 0.195669178808224 0.204291856012413 0.193944795816162 0.194970840582114 0.208258236265392 0.193075576252821 0.199799725206864 0.203200282673908 0.200680248248176 0.203485403540910 0.200529706312992 0.192369400042945 0.201069529015535 0.196634702003396 0.196015420752644 3 3 + 6330130 6330521 6330346.273 6328121 6330800 + gene protein_coding_gene FALSE TRUE AT3G18440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G18420.1); similar to Putative expressed protein [Brassica oleracea] (GB:AAW81734.1); contains InterPro domain Protein of unknown function UPF0005; (InterPro:IPR006214) 0.0566382536849506 0.597001538416713 0.566248164943529 1 0.954377831889486 11.6364225919985 0.0566382536849506 0.0963636128343584
AT4G12790_at 8.96628686989395 8.95280908069833 9.07045674998806 9.12169965116854 9.615282999417 9.02565963090906 9.3241848751359 9.10366611658725 9.11358896701664 8.98560565800963 9.2126050007558 9.20012311068738 8.78870324774064 8.98042584676356 9.03214423852378 9.11771541091486 8.62918853713207 9.05829577823081 8.90967016246467 0.128546858732105 0.129733323888938 0.138532489031533 0.131739665255506 0.129599696492413 0.133526759096995 0.129428226471520 0.125912208240636 0.135541065460129 0.130320228423825 0.128361532471679 0.131647659960793 0.134765643223227 0.13308958710364 0.127147071430645 0.129532489204424 0.140775784181950 0.127854229126846 0.129060472771469 4 0|4 /|- 7517279 7518069 7517744.333 7517052 7519419 - gene protein_coding_gene FALSE TRUE AT4G12790.1|AT4G12790.2|AT4G12790.3|AT4G12790.4 ATP-binding family protein|ATP binding similar to EMB1705 (EMBRYO DEFECTIVE 1705), ATP binding [Arabidopsis thaliana] (TAIR:AT5G22370.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98543.1); contains InterPro domain Protein of unknown function, ATP binding; (InterPro:IPR004130) 0.0604916197358885 0.596906004968676 0.566309033282966 1 0.954320560007992 18.1501832844784 0.0604916197358885 0.109325046220917
AT4G02580_at 10.4592777478688 10.5437128834074 10.3992382855496 10.5589344997061 10.3379608098649 10.2716601220066 10.5101253997273 10.8993050169074 10.1359533078107 10.4215939295301 10.4775759852035 10.5485235645857 10.3207566202555 10.4416892101877 10.6204785109446 10.3162338210602 10.1062663030864 10.3121989878708 10.2925526206432 0.0744931679888536 0.0734982136250823 0.0761146634668947 0.0764427276719689 0.0747354094959219 0.0759049233681615 0.0772782552793392 0.0798201427146538 0.0868380659082011 0.0773536536460653 0.0761327492168269 0.0734982136250823 0.0766639486973597 0.0750762954372245 0.078999892795811 0.0737206780447291 0.0891487458778721 0.0745052548332757 0.0775591948738046 4 4|0 +|/ 1135589 1136871 1136088.8 1134467 1137156 + gene protein_coding_gene FALSE TRUE AT4G02580.1 NADH-ubiquinone oxidoreductase 24 kDa subunit, putative Identical to NADH-ubiquinone oxidoreductase 24 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6.99.3) [Arabidopsis Thaliana] (GB:O22769;GB:Q940Z9); similar to NADH:ubiquinone oxidoreductase 24 kD subunit [Chlamydomonas reinhardtii] (GB:AAQ63695.1); similar to NADH:ubiquinone oxidoreductase, NDUFV2/24 kD subunit (ISS) [Ostreococcus tauri] (GB:CAL56692.1); similar to Os05g0509200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056000.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain NADH dehydrogenase (ubiquinone), 24 kDa subunit; (InterPro:IPR002023); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0507790383123201 -0.595690734993696 0.567083657496318 1 0.953592741717628 20.8356928429934 -0.0507790383123201 0.0751321817583468
AT4G19660_at 8.40823045679073 8.73181624470025 8.52050344650467 8.96478836532522 8.17788797841622 8.0916811860025 7.75772673464499 7.28768159584521 7.67038866597415 7.1023848789951 6.89939147504443 7.06836802943638 6.89635743630566 7.00871631946908 6.80547293971608 7.26075762873214 7.47168302022156 7.5079617748749 7.35514307812454 0.179850015578394 0.182010575705222 0.184991175001636 0.182597348342455 0.182141342452714 0.182040533439102 0.178469230680550 0.178469230680550 0.193252812407479 0.180831534984938 0.183229638290937 0.186360215871924 0.184509851620469 0.188612828532695 0.187477752115539 0.18089098927658 0.183455509776724 0.200821262417989 0.18306243048103 4 4|0 -|/ 10696330 10696931 10696624.111 10696276 10698253 - gene protein_coding_gene FALSE TRUE AT4G19660.1 NPR4 (NPR1-LIKE PROTEIN 4); protein binding Encodes a ankyrin repeat BTB/POZ domain-containing protein with 36% sequence identity with NPR1. Mutants are more susceptible to the bacterial pathogen Pseudomonas syringe pv. tomato DC3000 and to the fungal pathogen Erysiphe cichoracearum, but do not differ markedly from wild type in interaction with virulent and avirulent strains of the oomycete Peronospora parasitica. NPR4 is required for basal defense against pathogens, and may be implicated in the cross-talk between the SA- and JA-dependent signaling pathways. similar to NPR3 (NPR1-LIKE PROTEIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G45110.1); similar to ankyrin repeat BTB/POZ domain-containing protein [Populus trichocarpa] (GB:ABF48718.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.0656089281719785 0.595364657381889 0.567291604870181 1 0.953397686288377 15.4879448938652 0.0656089281719785 0.126041652446490
AT4G02440_at 7.8451535816731 8.40142730490682 7.821609668798 8.09862313370255 8.58702719685512 8.53219129801443 7.8223444564618 8.39325446087881 8.56305201411106 8.06113230012489 8.77229052497898 8.19960238391541 8.5869025650209 8.6286346580229 8.03696139759632 8.77967607926435 8.20270021366295 8.27058868441899 8.67858975205799 0.141675988820310 0.141163491955873 0.142183334623600 0.139798266192736 0.139487937489447 0.153786944376308 0.140981565025840 0.143387998580265 0.156762062088374 0.149509135058305 0.138097641182754 0.138681481637843 0.142824979323002 0.144369166155574 0.143556720690240 0.136572274606055 0.168197084242727 0.145959234897555 0.141413786616802 4 4 + 1073007 1073523 1073235.182 1072481 1073779 + gene protein_coding_gene FALSE TRUE AT4G02440.1 EID1 (EMPFINDLICHER IM DUNKELROTEN LICHT 1) EID1 is an F-box protein that functions as a negative regulator in phytochrome A (phyA)-specific light signalling. Expressed at all stages of plant development independently of light conditions, localizes to the nucleus, and forms nuclear speckles under continuous far-red light. Forms stable dimeric and trimeric complexes with several ASK proteins and Cullin1 in yeast and in planta. Identical to Phytochrome A-associated F-box protein (Empfindlicher im dunkelroten Licht protein 1) (EID1) [Arabidopsis Thaliana] (GB:Q8LEA8;GB:O81289); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAS79732.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810) 0.0723647073122597 0.595287419889709 0.567340867389213 1 0.953351498111107 16.6221676803904 0.0723647073122597 0.146343492412082
AT4G33690_at 5.62213402801824 5.98764492606019 6.01769619973699 6.05321989096194 5.7225493553818 6.42779657258924 5.45282289347434 6.14110039580193 6.07271156814592 5.7844322874395 5.64306341435097 5.66392112394429 5.42951981404352 5.51387631751995 5.76157497957302 5.68381167976738 5.51274768886246 5.5343149969507 6.19410952704359 0.249415915789915 0.249415915789915 0.249415915789915 0.265948981442429 0.250991237296209 0.283416360003758 0.257476012520505 0.256723826280618 0.254816011091784 0.257698323289138 0.251806044016439 0.2534495242245 0.256131983568152 0.264872003249944 0.253731283649569 0.256689638852449 0.270167942984399 0.264828871565656 0.265138808859580 4 4 + 16175631 16175961 16175806.5 16174821 16176256 + gene protein_coding_gene FALSE TRUE AT4G33690.1 similar to nucleic acid binding [Arabidopsis thaliana] (TAIR:AT3G23900.2); similar to Os07g0213400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059181.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05599.1) -0.084920382585488 -0.595267137091374 0.567353804278459 1 0.953339369864301 11.7330896391295 -0.084920382585488 0.181992277683371
AT2G01180_at 6.97518595972483 6.7148074202765 6.70515974120717 6.9564915049297 5.95035170766163 6.07020756792136 5.29138942002661 5.71092534501724 6.85354112635161 5.78964116630509 6.4307966041348 6.25084374411298 5.9250516341983 6.48079953462179 6.11317916855437 5.81605912314474 5.40011221231525 5.91428648163885 5.88179131666512 0.217391413638247 0.22122300153619 0.210462202456379 0.227482687871263 0.208593436454525 0.227758236760101 0.210855450185956 0.229292463583671 0.226082090490593 0.213173930710198 0.205303371020471 0.205303371020471 0.205303371020471 0.210682839595641 0.212563910362249 0.209893065726924 0.258054407601363 0.222642197761886 0.205303371020471 2 2 - 107238 107754 107439 106899 108802 - gene protein_coding_gene FALSE TRUE AT2G01180.1|AT2G01180.2 ATPAP1 (PHOSPHATIDIC ACID PHOSPHATASE 1); phosphatidate phosphatase Encodes phosphatidate phosphatase. Up-regulated by genotoxic stress (gamma ray or UV-B) and elicitor treatments with mastoparan and harpin. Expressed in roots and leaves. Identical to Lipid phosphate phosphatase 1 (EC 3.1.3.-) (AtLPP1) (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl diphosphate phosphatase) (LPP1) [Arabidopsis Thaliana] (GB:Q9ZU49;GB:Q8H0G3;GB:Q8LDP8;GB:Q945N3;GB:Q94LY6); similar to LPP3 (LIPID PHOSPHATE PHOSPHATASE 3), phosphatidate phosphatase [Arabidopsis thaliana] (TAIR:AT3G02600.1); similar to phosphatidic acid phosphatase alpha [Vigna unguiculata] (GB:AAF89579.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934)|Identical to Lipid phosphate phosphatase 1 (EC 3.1.3.-) (AtLPP1) (Phosphatidic acid phosphatase 1) (AtPAP1) (Prenyl diphosphate phosphatase) (LPP1) [Arabidopsis Thaliana] (GB:Q9ZU49;GB:Q8H0G3;GB:Q8LDP8;GB:Q945N3;GB:Q94LY6); similar to LPP3 (LIPID PHOSPHATE PHOSPHATASE 3) [Arabidopsis thaliana] (TAIR:AT3G02600.5); similar to phosphatidic acid phosphatase alpha [Vigna unguiculata] (GB:AAF89579.1); contains InterPro domain Phosphoesterase, PA-phosphatase related; (InterPro:IPR000326); contains InterPro domain Acid phosphatase/vanadium-dependent haloperoxidase; (InterPro:IPR008934) 0.0569377269507662 0.594869694089082 0.567607337462366 1 0.953101792133052 12.4050059663193 0.0569377269507662 0.0980993235628659
AT2G31710_at 5.91252328894528 6.29127365913785 5.43885614889745 5.591703756497 6.36464838309786 5.94836746896953 6.41988521747334 5.65329989744486 4.71885004136712 5.05507996094486 5.45784834276957 5.72771617538808 5.14431847842969 5.415169776591 5.28755841791511 5.11347924843049 4.85654094505766 5.21079135219815 4.87995599930558 0.233049713765687 0.240755373346544 0.233398408720991 0.235422320155458 0.234194663755952 0.240458941333155 0.236768241836036 0.231540350904102 0.258091823295170 0.23409884771487 0.229096528272807 0.229684048934293 0.247160917052812 0.235924677116168 0.246043120372774 0.229096528272807 0.242121531431778 0.250274969722408 0.237329471096172 2 2|0 -|/ 13489140 13489933 13489372.2 13488870 13490201 - gene protein_coding_gene FALSE TRUE AT2G31710.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05780.1); similar to Os04g0612900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053850.1) 0.0793487992533728 0.594575521552059 0.567795034759953 1 0.952926039321409 11.0332229822096 0.0793487992533728 0.166686507885412
AT1G18150_at 7.3278016737982 7.4582834747494 7.0325254164552 7.48134766263695 7.21666601625837 7.28424449119057 7.67058325956912 7.98242200213142 7.56600298637081 7.00245367409022 7.16384125433784 7.42606071342655 7.45758678441567 7.76758048687711 7.25601304603978 7.65631558942552 7.4674623465785 7.23562661886252 6.99017910466227 0.158581478786868 0.161029522457652 0.161178524389007 0.152038144534291 0.166612558145217 0.159930828097475 0.152266050435923 0.167236343482908 0.154560538587234 0.160417705307938 0.157394766526007 0.158128313910837 0.162162530727705 0.156240611563534 0.163559989910642 0.153776639575349 0.160022776533027 0.167954622900015 0.158437708581627 1 1|0 -|/ 6244830 6245596 6245135.1 6244377 6247762 - gene protein_coding_gene FALSE TRUE AT1G18150.1|AT1G18150.2 ATMPK8 (Arabidopsis thaliana MAP kinase 21); MAP kinase ATMPK8, Identical to Mitogen-activated protein kinase 8 (EC 2.7.11.24) (MAP kinase 8) (AtMPK8) (MPK8) [Arabidopsis Thaliana] (GB:Q9LM33;GB:Q9LMS2;GB:Q9MB23); similar to ATMPK15 (Arabidopsis thaliana MAP kinase 16), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G73670.1); similar to MPK16 (mitogen-activated protein kinase 16), MAP kinase [Arabidopsis thaliana] (TAIR:AT5G19010.1); similar to MPK9 (MAP KINASE 9), MAP kinase [Arabidopsis thaliana] (TAIR:AT3G18040.1); similar to double HA-tagged mitogen activated protein kinase 9 [synthetic construct] (GB:ABG54336.1); similar to double HA-tagged mitogen activated protein kinase 15 [synthetic construct] (GB:ABG54342.1); similar to double HA-tagged mitogen activated protein kinase 8 [synthetic construct] (GB:ABG54335.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0567388863195479 -0.593283505160817 0.568619825421954 1 0.952155067666407 14.7392456379503 -0.0567388863195479 0.0979368864034582
AT1G60420_at 7.77266041474133 8.25429029629493 8.49592500419346 8.51544575568287 7.97311827637685 8.16451873787788 7.51816415747219 7.58777264491999 7.25617182403928 7.98546067025166 7.64645824092433 7.12703928135086 6.88148388381551 7.2014727935322 6.85675722130638 7.38939599703651 7.30335165142677 7.3352984758838 7.59560898930384 0.180555354726066 0.18163339129916 0.179030657464547 0.180035540773224 0.178557883069516 0.176775298205314 0.175387928799669 0.184518278910499 0.193529291665789 0.175387928799669 0.175802770504406 0.175458297855037 0.179274925881738 0.190130560131837 0.179716660770115 0.175436758015824 0.183406048514457 0.187158025553788 0.180112027534738 1 1 + 22267380 22267884 22267633.091 22265553 22268073 + gene protein_coding_gene FALSE TRUE AT1G60420.1 DC1 domain-containing protein similar to electron carrier [Arabidopsis thaliana] (TAIR:AT4G31240.2); similar to PDI-like protein [Zea mays] (GB:AAD04231.1); similar to protein disulfide isomerase (PDI)-like protein 3 [Cucumis melo] (GB:AAU04767.1); similar to protein disulfide isomerase (PDI)-like protein 2 [Cucumis melo] (GB:AAU04766.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Redoxin; (InterPro:IPR013740); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Thioredoxin-like; (InterPro:IPR011594); contains InterPro domain C1-like; (InterPro:IPR011424) 0.054636715235137 0.593188972037764 0.568680199662446 1 0.952098718089858 15.4502724214572 0.054636715235137 0.090557023764922
AT1G47570_at 6.72442023507932 6.0942226449974 6.30428865760603 6.49491001271472 6.90303191301339 6.41411945681118 6.82522749737591 6.45617222726061 5.40252875429576 5.79363614138426 5.2117686342012 5.31551026775945 5.76054011188249 5.5141583798206 5.26593668908666 5.89143683963929 5.80875623234246 5.18271470237468 5.74867539644332 0.202807642209603 0.200719534237857 0.199067817970455 0.198519615760081 0.206549024602867 0.206647939817947 0.200258192964342 0.200951490591563 0.206933792528769 0.199873557297430 0.203043934252283 0.200038807597206 0.198519615760081 0.201636873225161 0.205330649281256 0.198519615760081 0.204938791668067 0.210210308009850 0.202733968225986 1 1|0 +|/ 17484073 17485538 17484756.125 17481095 17485942 + gene protein_coding_gene FALSE TRUE AT1G47570.1|AT1G47570.2 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to Os11g0175500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065879.1); similar to At1g47570 [Oryza sativa (japonica cultivar-group)] (GB:AAX95796.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0751752531890374 -0.592235558806283 0.569289306920058 1 0.951530863834613 12.0981154953637 -0.0751752531890374 0.155626346100921
AT1G20960_at 8.62465867336043 8.80550477551317 8.75680868040644 8.98450986172864 8.93326308565852 8.73477676323066 8.81309235934595 8.92175671972152 8.46169457268726 8.54585009697092 8.57507890532743 8.78452885977208 8.68634180096694 8.47581189307737 8.45194558839378 8.86099926281848 8.7767757849897 8.51693093642734 8.81348378350107 0.113842097785324 0.115151252578152 0.112422262954992 0.112422262954992 0.116296816920937 0.118259854048789 0.114991813203452 0.116466054056648 0.121630261028143 0.117438052050428 0.115420804301390 0.117573910701691 0.117807592055371 0.115459481620166 0.124398808248319 0.112422262954992 0.117650203349233 0.117496748411384 0.118397126868137 1 1 - 7302586 7303136 7302820.818 7301737 7309903 - gene protein_coding_gene FALSE TRUE AT1G20960.1 EMB1507 (EMBRYO DEFECTIVE 1507); ATP-dependent helicase similar to U5 small nuclear ribonucleoprotein helicase, putative [Arabidopsis thaliana] (TAIR:AT2G42270.1); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT5G61140.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 8 [Bos taurus] (GB:XP_880052.1); similar to PREDICTED: similar to activating signal cointegrator 1 complex subunit 3-like 1 isoform 1 [Danio rerio] (GB:XP_685958.1); similar to putative Sec63 domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAP13001.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Sec63; (InterPro:IPR004179) 0.0475643051780112 0.589306726288122 0.571162760583894 1 0.949791674385317 17.4458269215497 0.0475643051780112 0.0637625783450995
AT3G52890_at 5.24683921195968 5.51555045513722 5.32184020703919 5.20012337871390 5.49632832487591 5.57814684655103 5.41843461626602 5.59902473573193 5.73031329713109 5.76353506218683 5.93460451069331 6.23788582185787 5.67131875192109 5.8706811588235 5.8213498996397 6.2402143516981 5.77035908716623 5.77310825733823 5.83105564037082 0.184463310290874 0.181658852453056 0.178538452962458 0.185996719850189 0.171487487010457 0.185996639920238 0.175101888972374 0.182121760931241 0.189398436835866 0.171653556727887 0.173727296873788 0.177470948329835 0.175609068004110 0.173125694260288 0.171003598335074 0.170878884548291 0.179828189247632 0.176335971881507 0.183327918538017 3 3 + 19622454 19622974 19622722.455 19618935 19623164 + gene protein_coding_gene FALSE TRUE AT3G52890.1|AT3G52890.2 KIPK (KCBP-INTERACTING PROTEIN KINASE); kinase KCBP-interacting protein kinase interacts specifically with the tail region of KCBP similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G03640.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G36350.1); similar to H0321H01.14 [Oryza sativa (indica cultivar-group)] (GB:CAH66505.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0470598322586505 0.589170017760102 0.571250292439762 1 0.949710687368284 11.2669900869286 0.0470598322586505 0.0615081607225753
AT3G56590_at 5.33568850877223 5.25060066787284 5.06949026408493 5.15443894389192 5.36219867900703 5.05313341685367 5.03754295636098 4.61763383846327 5.31765654357596 5.94167145233188 5.88371362985561 5.61693756932098 5.42753901905635 5.37635702823608 5.69096028251308 5.84034734614427 5.75585823997789 5.20529608119369 5.50901342530584 0.205284961336022 0.192568830536163 0.20649751106488 0.201802253927970 0.213328017806655 0.204812685461706 0.205934249501590 0.196686016570634 0.209292668783747 0.204524835994842 0.196646187289477 0.201920962579123 0.200217014361741 0.209014312139184 0.193394912390422 0.202118246466141 0.209193744434884 0.204533743845033 0.202967378369723 3 3 + 20978064 20978600 20978344.545 20975836 20978998 + gene protein_coding_gene FALSE TRUE AT3G56590.1 hydroxyproline-rich glycoprotein family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G10810.1); similar to putative RING zinc finger protein-related [Medicago truncatula] (GB:ABD32886.1); contains domain PRICHEXTENSN (PR01217) 0.0548139211123705 0.588969759851614 0.571378527426858 1 0.949592084342905 10.7046275543843 0.0548139211123705 0.0925965720261887
AT4G14960_at 10.2237624263197 10.1157545415339 9.8330635792317 9.68801635332912 9.85115803801626 9.73325736912834 10.2438974091263 10.2857320380398 10.5517591183085 10.2277984111025 10.9522583051572 11.0708179443955 10.473972955537 10.6796637621067 11.141506337112 10.4077786512826 10.2843472378637 10.7778164361515 10.3240830519297 0.073835501821436 0.0677841827882805 0.0741273574860512 0.0676956950889573 0.0690499641017516 0.0732764870963437 0.0695153279308403 0.0677783743156882 0.0717518270397341 0.0698934047815142 0.0684671715368128 0.068459765534199 0.0698193791002932 0.0727387757623098 0.0721249044985339 0.0676242917673815 0.0718595894983087 0.0694892408230893 0.0730693494688264 4 4 - 8549176 8549324 8549230.364 8548488 8550449 - gene protein_coding_gene FALSE TRUE AT4G14960.1|AT4G14960.2 TUA6 (tubulin alpha-6 chiain) Encodes an alpha-tubulin isoform required for right handed helical growth. Identical to Tubulin alpha-6 chain (TUBA6) [Arabidopsis Thaliana] (GB:P29511); Identical to Tubulin alpha-2/alpha-4 chain (TUBA4) [Arabidopsis Thaliana] (GB:P29510); similar to TUA2 (tubulin alpha-2 chain) [Arabidopsis thaliana] (TAIR:AT1G50010.1); similar to TUA5 (tubulin alpha-5) [Arabidopsis thaliana] (TAIR:AT5G19780.1); similar to TUA4 (tubulin alpha-4 chain) [Arabidopsis thaliana] (TAIR:AT1G04820.1); similar to Tubulin alpha chain (GB:P33629); similar to Cell division protein FtsZ [Medicago truncatula] (GB:ABE93145.1); similar to putative tubulin alpha-2/alpha-4 chain [Brassica napus] (GB:AAQ81585.1); contains InterPro domain Tubulin/FtsZ, GTPase; (InterPro:IPR003008); contains InterPro domain Alpha tubulin; (InterPro:IPR002452); contains InterPro domain Tubulin/FtsZ, C-terminal; (InterPro:IPR008280); contains InterPro domain Tubulin; (InterPro:IPR000217) -0.042636379454031 -0.587436134704801 0.572361121724798 1 0.948685016847763 20.5425304180812 -0.042636379454031 0.0380543643950577
AT1G68670_at 9.77927181308447 9.89198271389856 9.806506044042 9.84448018874632 10.2462514599166 10.1840495300643 10.1066033068542 10.1643072958831 9.25808964787935 9.63973462547344 9.50652376937065 9.50256662918408 9.62399472334945 9.17639328072948 9.35462025879283 9.59651614916041 9.3810554049677 9.308142262396 9.74636178063283 0.136285096943114 0.129931094670837 0.134510400500441 0.132976378693122 0.129931094670837 0.138091419822671 0.129931094670837 0.129931094670837 0.136314806060767 0.135149067396484 0.135116518671451 0.132089304756996 0.129931094670837 0.146893208519247 0.141153033586915 0.129931094670837 0.142361111311123 0.134750387920684 0.135989277713272 1 1 + 25786655 25787511 25787118.818 25785692 25787739 + gene protein_coding_gene FALSE TRUE AT1G68670.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G25550.1); similar to myb DNA-binding domain-containing protein [Musa acuminata] (GB:ABF70013.1); similar to Os02g0325600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046702.1); similar to Os01g0176700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042183.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0410274674945699 -0.587144487159482 0.572548088208528 1 0.948512766110662 19.4925758329307 -0.0410274674945699 0.025282932959984
AT2G17150_at 4.79205324900739 5.03380135410433 5.10706664253119 5.00571116395447 5.29128374112167 5.18493849058485 5.53616896079095 5.04915566931524 4.81533680803135 4.93128586895199 4.64726328811259 4.87301442721 4.98829806809228 4.917719738884 4.62747132501185 5.33409320741191 5.71131575098412 4.6389663518465 4.9525846746792 0.201223464943285 0.202090331631336 0.203434044681873 0.203631741778531 0.201223464943285 0.216087952104935 0.201237596977872 0.201223464943285 0.215940358163403 0.210439158178686 0.20340103847176 0.210486840709241 0.201223464943285 0.203905131088330 0.203446444006215 0.205254831542933 0.205830026526617 0.211553833851732 0.203112731694115 2 2 - 7474138 7474679 7474410.545 7473923 7478344 - gene protein_coding_gene FALSE TRUE AT2G17150.1|AT2G17150.2 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35270.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270)|similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G35270.1); similar to NIN-like protein 1 [Lotus japonicus] (GB:CAE30324.1); contains domain no description (G3D.3.30.450.40); contains domain GAF domain-like (SSF55781) 0.055993593525104 0.586897317219139 0.572706568380849 1 0.948366845757531 10.0585241857171 0.055993593525104 0.0974662452791348
AT4G00880_at 9.77249940999834 9.92466514348789 9.75212485888976 9.93058801936672 10.1866540497102 9.87002659719654 10.3027686053903 10.3408750792714 9.08291287764783 9.51066272335006 9.7754216231625 9.49066932254898 9.56565164206226 9.64411446390993 9.15532990179013 9.94172374745877 9.77523076702237 9.4820242627804 9.47669112959918 0.132505793370235 0.133460854907334 0.132242998522951 0.133499734114034 0.133351888849010 0.149714536470383 0.13351373637527 0.130588087970644 0.152896632793901 0.132284940306301 0.134707582218028 0.132287763347780 0.130887806372701 0.134555886821429 0.138883967368057 0.128642246913082 0.143659305260524 0.135434577967621 0.134108022067412 4 4 - 366694 367027 366852.909 366373 367274 - gene protein_coding_gene FALSE TRUE AT4G00880.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT2G46690.1); similar to Auxin responsive SAUR protein [Medicago truncatula] (GB:ABE93517.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) 0.0483307306150287 0.585524795319026 0.573587050096928 1 0.947557581882794 19.4902883670177 0.0483307306150287 0.0685061662185687
AT4G25370_at 9.43658440950788 9.5279894721904 9.45983242333128 9.34802546839516 9.67646809351837 9.37964906247437 9.59836485096012 9.55628970249153 9.5153543886148 9.28465286601652 9.27255722546325 9.3049577991672 9.14350973471107 9.27946767163386 9.59223363138374 9.262819875429 9.23292857134567 9.2004438147207 9.1423765206669 0.0870014207490307 0.0867440677797794 0.0913500082100754 0.089093137934576 0.086607546242275 0.091262297387364 0.0866350703695407 0.0878987131437056 0.0952073221987581 0.085234208196327 0.0876578077268461 0.089212748367844 0.0865951036605423 0.0862327717926887 0.0865488771430997 0.0856913093481489 0.0865120099428799 0.0914185281606344 0.0867114009050355 4 4|0 +|/ 12972879 12974392 12973990.333 12972718 12974880 + gene protein_coding_gene FALSE TRUE AT4G25370.1 Clp amino terminal domain-containing protein similar to Clp amino terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G12060.1); similar to ATPase AAA-2 [Trichodesmium erythraeum IMS101] (GB:YP_722954.1); similar to Os03g0247000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049547.1); contains InterPro domain Clp, N terminal; (InterPro:IPR004176) -0.0459132407376441 -0.585108131168918 0.573854493501065 1 0.947312252718264 18.7980217931492 -0.0459132407376441 0.0575852326536422
AT3G63070_at 7.04765144268568 7.41547254145692 6.70914716982025 7.60038226023164 7.30582647221757 7.20271213828438 7.08838976007862 7.01634256225781 6.75996956240994 6.24782787886848 6.46690939448656 6.49732634692578 6.61104739702512 6.54335480316935 6.07397790522088 6.8352075998008 6.42618257721959 6.55899816760233 6.21293419330248 0.217766717656155 0.217543800759115 0.221289209421196 0.214325692621660 0.213867731162954 0.228783251350374 0.213867731162954 0.224648658804439 0.248413996803349 0.219180791202501 0.213867731162954 0.216607821220565 0.213867731162954 0.223290180430595 0.223316316865034 0.213867731162954 0.232645494945034 0.243956811702060 0.218647525441228 3 3 + 23319250 23320234 23319669.091 23313340 23320633 + gene protein_coding_gene FALSE TRUE AT3G63070.1 PWWP domain-containing protein similar to PWWP domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G48160.1); similar to PWWP; Regulation of nuclear pre-mRNA protein [Medicago truncatula] (GB:ABE77466.1); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569); contains InterPro domain PWWP; (InterPro:IPR000313) 0.078633956294853 0.585096701964899 0.573861830530069 1 0.94730552553232 13.6275085777749 0.078633956294853 0.168265358728697
AT1G02280_at 8.31482638339569 8.27336827822244 7.73928442036585 7.64433397037356 8.80267389392885 8.33090787957043 8.10599832483836 7.796259462457 7.3221497698399 7.99956314795864 7.54826513088713 8.54515060574663 7.75921252073855 7.04461078694246 8.32587071746491 7.50371324007403 7.31493317963565 7.18957064886446 7.99816618864604 0.211874476124555 0.212979190274220 0.210120693160454 0.211537078514843 0.210149590112942 0.218546181608406 0.211262741982128 0.226170959095431 0.226464738963781 0.210381595256148 0.214630562669008 0.209249577320075 0.225915868792778 0.224126191882903 0.220893288817862 0.215828739585913 0.221721035499080 0.233690287685914 0.214943670176726 1 1|0 -|/ 448813 449719 449255.1 448465 450425 - gene protein_coding_gene FALSE TRUE AT1G02280.1 TOC33 (PLASTID PROTEIN IMPORT 1); GTP binding Encodes a GTP-binding GTP-ase. Component of the chloroplast protein import machinery. Required for import of POR B into plastids. Toc33 phosphorylation may not play an important role in vivo. similar to ATTOC34/OEP34 (Translocase of chloroplast 34) [Arabidopsis thaliana] (TAIR:AT5G05000.1); similar to TOC33 [Brassica napus] (GB:AAQ17548.1); contains InterPro domain AIG1; (InterPro:IPR006703); contains InterPro domain Chloroplast protein import component Toc34; (InterPro:IPR005688) -0.0563451264279979 -0.58509359426976 0.573863825538086 1 0.94730369637563 15.8395610212819 -0.0563451264279979 0.099297146161169
AT2G32850_at 6.64859993397379 6.60799497122069 6.75378505903295 6.76704779662301 6.90704889537173 6.55521844116673 6.72665135480728 6.43909244154809 5.72495311804166 6.3928825271366 5.81676085326027 6.40894939711418 6.11887924066258 5.77646311334373 6.00719461822725 6.06438756681653 6.3063430111024 6.4791810121251 6.36480475159015 0.191270625463339 0.184328070426776 0.200011031220077 0.184733570026150 0.187403686417300 0.200228610239364 0.193471319482346 0.194324497043818 0.194263790524593 0.189692543348939 0.204249995095475 0.192095817876517 0.206891019329836 0.192253812930059 0.196219463774871 0.187864214483573 0.200736983747469 0.196259091584474 0.189744329949059 2 2 - 13942533 13943091 13942796.818 13942263 13945922 - gene protein_coding_gene FALSE TRUE AT2G32850.1|AT2G32850.2 protein kinase family protein similar to ATPK3 (Arabidopsis thaliana serine/threonine protein kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT5G08160.1); similar to cyclin G-associated kinase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34080.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0507900459932549 0.584563466917625 0.574204201809114 1 0.946991799330574 12.8172548536369 0.0507900459932549 0.0789818642414797
AT3G27925_at 10.2722380952855 10.2290254757630 10.2408783708028 10.2433244808760 10.5087791741412 10.1737027149922 10.6338144326285 10.3904153810248 10.5378074524870 10.4665982910365 10.5200974991236 10.3706282168896 10.3882466453411 10.3953064881360 10.1607008422911 10.6097399206355 10.4650741253411 10.4489597795650 10.2798112753458 0.0922116754460656 0.0910516182253038 0.0904812113184594 0.0946299643077115 0.0884556933391349 0.0919961951430097 0.0907445620583839 0.093716445433287 0.0932972911183826 0.090759353437517 0.0893386497910969 0.0944476033750691 0.0913687277439335 0.0954138349028402 0.0900490757940843 0.0884556933391349 0.094665727054523 0.0930123942632013 0.0929643240321264 3 3|0 -|/ 10367914 10368985 10368477.7 10367608 10370126 - gene protein_coding_gene FALSE TRUE AT3G27925.1 DEGP1 (DEGP PROTEASE 1); serine-type peptidase Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Identical to Protease Do-like 1, chloroplast precursor (EC 3.4.21.-) (DEGP1) [Arabidopsis Thaliana] (GB:O22609;GB:Q94BX6;GB:Q9LK85); similar to DEGP8 (DEGP PROTEASE 8), serine-type peptidase/ trypsin [Arabidopsis thaliana] (TAIR:AT5G39830.1); similar to Peptidase S1 and S6, chymotrypsin/Hap [Medicago truncatula] (GB:ABE84843.1); contains InterPro domain PDZ/DHR/GLGF; (InterPro:IPR001478); contains InterPro domain Peptidase S1C, HrtA/DegP2/Q/S; (InterPro:IPR001940); contains InterPro domain Peptidase S1 and S6, chymotrypsin/Hap; (InterPro:IPR001254); contains InterPro domain Peptidase, trypsin-like serine and cysteine; (InterPro:IPR009003) -0.0489651554650721 -0.583115651357944 0.57513437146391 1 0.946141307087625 20.7604805303335 -0.0489651554650721 0.072060727897868
AT2G35630_at 5.98043025707052 6.29191965860344 6.30634769227449 6.05689023570599 6.05349675824685 5.81533013417959 6.40212641771334 6.36369892346452 6.04329105340261 6.60649728090796 6.86981326833928 6.92049825112764 6.30657328575608 6.75743578790597 6.7808243351767 6.6529081114558 5.67408987498182 6.20718010838078 6.61548911502716 0.215181775173885 0.212422264087331 0.204626993778438 0.211551911623535 0.205792195504792 0.216741919619542 0.206529742663054 0.216584933135856 0.217581360309337 0.207978290771871 0.200433750531760 0.204670915981377 0.200433750531760 0.214714535836072 0.214574942968547 0.201153303335767 0.234589548578129 0.210540444843190 0.210699945101047 2 2 + 14986615 14987372 14987087.636 14973757 14987685 + gene protein_coding_gene FALSE TRUE AT2G35630.1 MOR1 (MICROTUBULE ORGANIZATION 1) Member of the MAP215 family of microtubule-associated proteins required to establish interphase arrays of cortical microtubules.Mutants have defects in cytokinesis during pollen development. Vegetative phenotypes observed in temperature sensitive mutants include left-handed organ twisting, isotropic cell expansion and impairment of root hair polarity. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28155.1); similar to PREDICTED: similar to colonic and hepatic tumor over-expressed protein isoform b isoform 2 [Rattus norve (GB:XP_001068589.1); similar to PREDICTED: similar to colonic and hepatic tumor over-expressed protein isoform b isoform 4 [Canis familiaris] (GB:XP_861459.1); similar to microtubule bundling polypeptide TMBP200 [Nicotiana tabacum] (GB:BAB88648.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0510606904999802 -0.582660998442861 0.575426644072638 1 0.945874628797447 12.6302422734922 -0.0510606904999802 0.0806989140349635
AT1G08370_at 6.90156244253556 7.14405105157536 6.84081364765524 7.10910351504938 7.46532216904798 6.6575909086181 6.94010108107106 6.8972366717333 6.84673857998886 5.98304594645465 5.85231162032483 5.93322844377792 6.37846102997175 6.25715385235793 5.89821647199522 6.25270365912893 6.00127426012654 6.27347253618216 6.06909964437807 0.212302543550141 0.216698826765008 0.227847688357956 0.221897716479154 0.220413797292064 0.227788135137523 0.225371884477311 0.217885107493072 0.224858651424083 0.212302543550141 0.221938631183105 0.227797954623325 0.217756818786807 0.219376969550684 0.217403235753069 0.212302543550141 0.217007178553505 0.225578546276685 0.212302543550141 1 1 + 2639527 2640214 2639936.636 2638178 2640551 + gene protein_coding_gene FALSE TRUE AT1G08370.1 DCP1 (DECAPPING 1) Encodes DCP1 involved in mRNA decapping. DCP1 forms a mRNA decapping complex with DCP2 (At5g13570) and VCS (VARICOSE) (At3g13300). However, unlike DCP2, DCP1 itself does not have mRNA decapping activity in vitro. DCP1, DCP2 and VCS colocalize in cytoplasmic loci, which are putative Arabidopsis mRNA processing bodies. Null mutants of DCP1, DCP2, and VCS accumulate capped mRNAs with a reduced degradation rate. These mutants also share a similar lethal phenotype at the seedling cotyledon stage, with disorganized veins, swollen root hairs, and altered epidermal cell morphology. Identical to mRNA decapping enzyme-like protein (EC 3.-.-.-) (DCP1 homolog) [Arabidopsis Thaliana] (GB:Q9SJF3;GB:O64895); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to unknown [Solanum tuberosum] (GB:ABB02626.1); contains InterPro domain Dcp1-like decapping; (InterPro:IPR010334) -0.0731527871717537 -0.582437723164058 0.575570206582776 1 0.945743735745356 13.1972130814976 -0.0731527871717537 0.153331444499169
AT3G26085_at 8.60243789687245 8.44112239404338 9.00784107548677 8.7396042322629 9.3866655826865 8.55861615623208 9.4529187054846 8.9948896964723 9.0744314639822 9.12520828319971 8.90147231432065 8.74882459869602 8.81547646408462 8.91150556853194 8.54626183482404 9.04182083996068 9.01523912509485 8.83906633404286 8.98678543594563 0.138626003997678 0.131471001559615 0.140956874224416 0.138788814431926 0.141736704715523 0.145784267961775 0.144543870084091 0.143942294679804 0.146197349156344 0.132474495943505 0.136631713508539 0.140012342584072 0.140680152010079 0.142774857871975 0.141895888691487 0.13688338225609 0.141087820705944 0.141442719886976 0.133578294771826 3 3|0 +|/ 9532538 9533540 9532884.375 9532006 9533850 + gene protein_coding_gene FALSE TRUE AT3G26085.1|AT3G26085.2 CAAX amino terminal protease family protein similar to Os05g0295200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055110.1); similar to hypothetical protein glr2883 [Gloeobacter violaceus PCC 7421] (GB:NP_925829.1); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.0796718771579199 -0.581891503566739 0.57592150188751 1 0.945423713618112 17.8553120237694 -0.0796718771579199 0.172485252951580
AT3G20430_at 6.04973294689208 5.87178587679022 6.3302083389086 6.03552403476659 6.48446570689136 6.04363970433548 6.30267324443708 5.62807475381378 5.66258292300598 5.92339882430215 5.53263521697898 5.98911043855737 5.4944004773549 5.66230069054008 5.57252447816 5.53481718384305 6.33373877877943 5.8839444205382 6.01144019977618 0.1809192540793 0.1816306684158 0.184366886441922 0.185160666401946 0.180685689916343 0.183988411567696 0.189853404794441 0.191231993762334 0.189914382904206 0.180991780041366 0.183420336324291 0.178355093642226 0.183006864580992 0.179214323957836 0.182053532416124 0.186725355168239 0.187921479865462 0.188938732724646 0.184343086294914 3 3 + 7121726 7123053 7122525.818 7121486 7123179 + gene protein_coding_gene FALSE TRUE AT3G20430.1 similar to Os01g0559200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043341.1); similar to Mediator of U snRNA nuclear export PHAX (ISS) [Ostreococcus tauri] (GB:CAL53287.1); contains domain FAMILY NOT NAMED (PTHR13135) 0.0725096928207227 0.58184135496223 0.575953760449055 1 0.945394346086425 11.9013837139988 0.0725096928207227 0.151649085232229
AT2G26590_at 7.4700226396469 7.67028978565937 8.25323598491466 7.82299824296735 7.96362072935428 7.43508855950257 7.87502483847799 7.67777419997861 6.58997245003998 7.13957760282494 6.85217520546539 7.08383848961454 7.0529242213404 6.89930706796199 7.09448847271362 6.80612151822783 7.05667934376729 6.59395696918106 7.25961938194944 0.205496574056437 0.187459892132539 0.199343396006686 0.19310916725561 0.191503042780299 0.197028404560171 0.192828524185321 0.188092601819190 0.217856519300003 0.187459892132539 0.195053841034746 0.19268479635823 0.193263887545942 0.206405214680312 0.193217157291676 0.190175038049680 0.204575463517167 0.195117194043917 0.187459892132539 2 2|0 -|/ 11318283 11320813 11319196.125 11318082 11322174 - gene protein_coding_gene FALSE TRUE AT2G26590.1|AT2G26590.2|AT2G26590.3 adhesion regulating molecule family similar to Adhesion regulating molecule [Medicago truncatula] (GB:ABE79214.1); contains InterPro domain Adhesion regulating molecule; (InterPro:IPR006773) 0.0645023063366132 0.580906783985845 0.576555117228697 1 0.94484747680532 14.7341699838821 0.0645023063366132 0.127576094564178
AT3G55640_at 5.7996336823874 5.71723165929601 5.39162249039217 5.88313793257708 6.22558249417186 4.88789099896388 6.19335247010136 5.76070156273025 4.26554256833415 4.47271246030407 4.33648500053909 4.41936769781966 4.72934011688383 4.96343322358534 3.76818022819547 4.80570045890323 4.65981710067376 4.41157830874738 4.64783378594823 0.216309328967743 0.221180955254171 0.235140292853822 0.221457256278634 0.221872341079533 0.222930484559739 0.220050466735494 0.215482026738369 0.235830393818354 0.217609594974234 0.21646413795373 0.217233292307886 0.215760046074859 0.222719397046457 0.221789521284311 0.221368327971706 0.225273514005440 0.217108193172430 0.219138671497682 3 3|0 +|/ 20651889 20653326 20652289 20650812 20653638 + gene protein_coding_gene FALSE TRUE AT3G55640.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT3G53940.1); similar to Os03g0267700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049667.1); similar to putative peroxisomal Ca-dependent solute carrier protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06887.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.110481601273093 -0.579787126324723 0.577276032008249 1 0.944193365468389 10.2192778472178 -0.110481601273093 0.258134851376482
AT2G24860_at 9.79131586782084 9.9593051483894 9.93221376061924 9.95015725828793 9.82049918608799 9.23534161122502 10.254157543421 10.2836444452155 9.7844911792626 9.8540973381029 10.2188826292974 10.125207138429 9.71991735506803 10.2698222522780 10.0383646954453 10.0808451697384 9.33186842512203 9.70404686022856 9.50237630878874 0.105766447497894 0.103858030679692 0.103903749031091 0.104571699068545 0.106076862831683 0.116279984882725 0.10786102685202 0.106965148763853 0.121122861189577 0.108145454774122 0.103642921711386 0.104184707595823 0.11160445879059 0.103642921711386 0.103642921711386 0.103642921711386 0.112923417598201 0.118902636720273 0.111881148438076 2 2|0 -|/ 10594197 10595281 10594781.125 10593854 10595408 - gene protein_coding_gene FALSE TRUE AT2G24860.1 chaperone protein dnaJ-related similar to Tsi1-interacting protein TSIP1 [Nicotiana tabacum] (GB:AAD18030.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) -0.0575442117536085 -0.578889406882878 0.577854411147521 1 0.94366974880155 19.7282164815095 -0.0575442117536085 0.105523794850084
AT3G06240_at 7.76926319853993 7.97006806547766 7.697035421108 7.97766574397751 8.50804564334897 7.74658988849776 7.66581127765667 7.70435274490806 7.24916078772334 7.40837716954577 7.27076433241446 7.13906913827889 7.35911339641643 7.19441187584098 7.19431598553073 7.36446383916662 7.45551493669955 6.96491786635154 7.26681706858168 0.198006290067962 0.203968721682145 0.209970431855427 0.202830918736390 0.216466009661834 0.216545747849845 0.203603379194029 0.197809209175252 0.214761291464721 0.216279782561255 0.206161428672061 0.206027473433961 0.207207234066065 0.205583208238912 0.204836233893479 0.198474198117933 0.203684050389089 0.213212078980310 0.212160989110333 3 3 + 1888053 1888580 1888302.636 1887049 1888756 + gene protein_coding_gene FALSE TRUE AT3G06240.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G23880.1); similar to Putative F-Box protein, identical [Solanum demissum] (GB:AAT38720.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain F-box associated type 1; (InterPro:IPR006527) 0.069831715987309 0.578582340619155 0.578052320863688 1 0.943490815962907 15.1553238795832 0.069831715987309 0.144826829656495
AT1G60810_at 5.93351441340018 6.30747947822632 5.15919675294959 5.24122751991652 5.72416869787415 5.5307389115638 4.98173849139977 4.92797587296671 6.28383881126241 6.00708684532025 6.17130128575996 6.7191285271541 6.3536543279847 6.26635877900566 6.73501613658045 5.85106937206846 6.00066980117314 5.88546357892534 5.7860246433766 0.217198095841221 0.212805052260698 0.214734415558199 0.213264851608395 0.211215124321652 0.223959537080413 0.211215124321652 0.211215124321652 0.218312650225313 0.217112330737586 0.217730338728904 0.213103456646498 0.212071581922560 0.217953783855886 0.214970436580729 0.211215124321652 0.220506118713939 0.217043312709421 0.226595724423003 1 1|0 -|/ 22392356 22393311 22392859.222 22392192 22394830 - gene protein_coding_gene FALSE TRUE AT1G60810.1 ACLA-2 (ATP-citrate lyase A-2) One of the three genes encoding subunit A of the trimeric enzyme ATP Citrate lyase similar to ACLA-1 (ATP-citrate lyase A-1) [Arabidopsis thaliana] (TAIR:AT1G10670.2); similar to ACLA-3 (ATP-citrate lyase A-3) [Arabidopsis thaliana] (TAIR:AT1G09430.1); similar to ATP citrate synthase, small subunit [Medicago truncatula] (GB:ABE86911.1); similar to Os11g0696200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068510.1); similar to ATP citrate lyase b-subunit [Lupinus albus] (GB:CAC86996.1); contains InterPro domain ATP-grasp; (InterPro:IPR013650); contains InterPro domain ATP citrate synthase, small subunit; (InterPro:IPR012250) 0.0491692663364127 0.577716720531054 0.57861043220842 1 0.942986873516023 11.6124964303211 0.0491692663364127 0.0748117569032144
AT3G15410_at 7.03025819550197 7.21389184491602 6.00961120697206 6.24355556554922 7.68499371147341 6.71242712594101 7.56030861010197 7.07510874925506 6.31964930161008 6.03612134867107 7.08081834216746 7.34151351012023 6.84524597855253 6.50080937153358 6.62886701698612 6.654360834403 6.25257819046184 6.58084335273037 6.70143707117376 0.216051053356844 0.218578269852444 0.218195182780575 0.209438821793658 0.209438821793658 0.223301038758542 0.227400635837097 0.21227948864452 0.215020547567619 0.217649316100858 0.215236906288203 0.215157808500140 0.213432744643272 0.234775235141543 0.215731219528719 0.209438821793658 0.219979677442997 0.223811256044433 0.222204264611189 3 3|0 +|/ 5206034 5207077 5206542.222 5203299 5207566 + gene protein_coding_gene FALSE TRUE AT3G15410.1 leucine-rich repeat family protein similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G24240.1); similar to Os02g0826600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048588.1); similar to hypothetical protein [Silene latifolia] (GB:CAA73132.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) -0.087008973329369 -0.577654564770184 0.578650518901243 1 0.94295071465128 13.4852854504327 -0.087008973329369 0.195003962341038
AT3G12370_at 5.51923397619107 5.9359047077794 5.2018958781556 5.46747654049334 5.60895139872635 6.34185572996449 6.36218367964275 6.17492418026825 4.60398522839867 4.76994484563053 4.80141972825974 5.36002613720567 4.80006030534112 5.05653530137758 5.14461912815478 4.98153516275567 5.83743699976837 4.38004228135169 4.29132671637758 0.231740608234477 0.230535237474354 0.232105934665154 0.236154888630019 0.236484248539326 0.23024236584375 0.233290040366225 0.23024236584375 0.240786581715829 0.230401316418757 0.23024236584375 0.23374381176628 0.23024236584375 0.236127855146926 0.23731114672089 0.230817409173003 0.232750915615078 0.246948889778873 0.235702323218464 3 3 - 3937486 3937903 3937689.091 3937197 3938101 - gene protein_coding_gene FALSE TRUE AT3G12370.1 ribosomal protein L10 family protein similar to ribosomal protein L10 family protein [Arabidopsis thaliana] (TAIR:AT5G13510.1); similar to 50S ribosomal protein L10, chloroplast precursor (CL10) (GB:O80362); contains InterPro domain Ribosomal protein L10; (InterPro:IPR001790) 0.0735535172945725 0.577510007751349 0.578743755394502 1 0.942866633007338 10.6267007500672 0.0735535172945725 0.156359697781411
AT1G06820_at 6.72875484694146 6.13576084192552 5.88884054994156 6.03049391710185 6.53363233351786 6.26507021041248 7.15585325381798 6.6510335929394 6.76002277111926 6.89296378212609 6.59674563212536 7.24447381351994 7.03484668072772 7.1124779415317 7.29096003957731 7.61472159656285 7.22995399869066 6.88793199266137 6.67861297672545 0.213264506855006 0.209299111398814 0.215071765875520 0.209994964495743 0.209301166043984 0.224720688296254 0.212617431710447 0.219661417664234 0.213801213621750 0.209978534221370 0.211679775891908 0.207503655479602 0.207721695588856 0.222878452201775 0.213945216031007 0.210061149364643 0.213293353447230 0.211304427677732 0.218828024266458 1 1 - 2093145 2094248 2093673.364 2092945 2096231 - gene protein_coding_gene FALSE TRUE AT1G06820.1 CRTISO (carotenoid isomerase); carotenoid isomerase Encodes carotenoid isomerase. Catalyzes the isomerization of poly-cis-carotenoids to all-trans-carotenoids. Together with PDS and ZDS, CRTiso is required to complete the synthesis of lycopene from phytoene. Identical to Carotenoid isomerase, chloroplast precursor (EC 5.-.-.-) (CrtISO) (Carotenoid and chloroplast regulation protein 2) (CRTISO) [Arabidopsis Thaliana] (GB:Q9M9Y8); similar to amine oxidase family [Arabidopsis thaliana] (TAIR:AT1G57770.1); similar to carotenoid isomerase [Chrysanthemum x morifolium] (GB:BAE79546.1); similar to Carotenoid isomerase, chloroplast precursor (CrtISO) (Protein tangerine) (GB:Q8S4R4); similar to Carotenoid isomerase, chloroplast precursor (CrtISO) (GB:Q2VEX9); contains InterPro domain Phytoene dehydrogenase-related protein; (InterPro:IPR008151); contains InterPro domain Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; (InterPro:IPR003953) -0.0695136312808193 -0.576426852625324 0.579442636087675 1 0.942237230662465 13.3755368459489 -0.0695136312808193 0.144650934089648
AT1G66740_at 6.36843517654581 5.99769379560245 6.04635700262165 5.84450422976433 6.99461866374597 6.28887978863578 6.68675410653436 6.36751629527604 5.62871942992306 5.22992871382122 5.60152941295247 4.9244045017271 5.55831361123878 5.52177472417491 5.17224559553683 5.35464768906189 5.9497736846121 5.1415489479889 5.5976813965816 0.212345859476128 0.222654163731754 0.227232895089649 0.220672946011066 0.219750386549181 0.220565735520587 0.231784337169929 0.217944779085686 0.235443425166780 0.21847737676792 0.212345859476128 0.216620478815134 0.212345859476128 0.217980707741025 0.215123479585261 0.216400452850237 0.220161024141659 0.220154902525809 0.229199477181383 1 1|0 +|/ 24896262 24897112 24896723.3 24896003 24897429 + gene protein_coding_gene FALSE TRUE AT1G66740.1 AtSP7 (Anti- silencing function 1a) Located on the SSL2 region of Arabidopsis thaliana, which is homeologous to the Brassica S locus for self incompatibility. Expressed in both vegetative and reproductive organs suggesting AtSP7 might not be involved in self incompatibility. Identical to Anti-silencing factor 1-like protein a (Anti-silencing function 1a protein) (Silencing group A protein 2) (S-locus protein 7) (AtSP7) (ASF1A) [Arabidopsis Thaliana] (GB:Q9C9M6); similar to ASF1B/SGA01/SGA1 (Anti- silencing function 1b) [Arabidopsis thaliana] (TAIR:AT5G38110.1); similar to S-locus protein 7 [Brassica rapa] (GB:BAA85456.1); contains InterPro domain Anti-silencing protein, ASF1-like; (InterPro:IPR006818) -0.071961665747369 -0.57474271632747 0.580530219014316 1 0.941260765863514 11.7685813578509 -0.071961665747369 0.152658723022247
AT2G42210_at 9.8223701641786 9.79501896835368 9.65714020784489 9.5979501444702 9.45193956931363 9.38612084433066 9.89507351631956 10.0336378416481 9.36787247317235 9.6900814189313 10.0080964806691 10.0408828524452 9.74429148940655 9.85994249597807 10.0625471164119 9.6549174830728 9.68116134484868 9.70272466900414 9.6284501185058 0.108721179286955 0.106574335267389 0.105519658523564 0.105519658523564 0.110184089527054 0.118172491187379 0.111175022158444 0.116418222320978 0.118967224245570 0.111105974488675 0.114511744894915 0.108907124274200 0.111144926346566 0.116528369740656 0.111517066183372 0.109756613825202 0.123054498088066 0.120371247269705 0.111131610614438 2 2 + 17597787 17598624 17598141.818 17597269 17598930 + gene protein_coding_gene FALSE TRUE AT2G42210.1|AT2G42210.2|AT2G42210.3|AT2G42210.4 ATOEP16-3; protein translocase Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. similar to Os09g0279300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062758.1); similar to Os02g0717300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047931.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD26504.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397) -0.0405258049293653 -0.574586821153913 0.580630950504156 1 0.94117051042925 19.4081339878988 -0.0405258049293653 0.0288455331141715
AT3G19520_at 7.56735700475707 7.71764959575906 7.92617094665853 7.50340360448258 8.10762018323014 7.67260831171985 7.16501914062063 7.14027193126743 7.10665165136894 7.1239799035569 6.73649534514013 6.20388769471455 6.51005661004494 6.67981124869936 6.6616866830674 6.80626406504665 7.00440952144187 6.50454943633601 7.24602185320911 0.215630184973206 0.218030105318401 0.209457039714727 0.210173619497260 0.214038191275984 0.222112526410853 0.215591693703185 0.21990982015855 0.222118380606557 0.215583313962099 0.215467933195815 0.213231986091864 0.209034948603256 0.221550787202153 0.211817723383828 0.208107664302269 0.215526220441367 0.212607989890005 0.227731475328359 3 3|0 +|/ 6773396 6774183 6773864.6 6772693 6774449 + gene protein_coding_gene FALSE TRUE AT3G19520.1 similar to ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT1G28500.1); contains InterPro domain Protein of unknown function DUF626, Arabidopsis thaliana; (InterPro:IPR006462) -0.0578065251976132 -0.573575118250423 0.581284897243584 1 0.940585332733686 14.4986523622818 -0.0578065251976132 0.108234291757847
AT1G06390_at 7.46523937580758 7.67281721452287 6.64154185094935 7.2210499927281 7.75349666904893 7.46106832454732 7.63386784425599 7.68721174805412 6.88899684172935 6.58618228092582 7.60463529198303 7.61945300256978 7.46463272111173 7.25045435551983 7.47538012376500 7.30141932793985 6.87502873913423 6.81653020394204 7.02637147791881 0.208457654471026 0.211390695313387 0.214184768431269 0.208457654471026 0.213913838920316 0.218416304352858 0.213027011150011 0.212572529026911 0.217211454745726 0.220120971895528 0.215062895080293 0.209043583439622 0.214510563807627 0.214492288164124 0.211367028776640 0.213800093032527 0.22262316174763 0.229955176663974 0.208457654471026 1 1|0 +|/ 1949340 1950216 1949777.6 1946787 1950859 + gene protein_coding_gene FALSE TRUE AT1G06390.1|AT1G06390.2 GSK1 (GSK3/SHAGGY-LIKE PROTEIN KINASE 1); kinase encodes a GSK3/shaggy-like protein kinase. Gene expression is induced by NaCl and ABA but not KCl, suggesting that this gene may be involved in response to osmotic stress. Identical to Shaggy-related protein kinase iota (EC 2.7.11.1) (ASK-iota) (ASK9) [Arabidopsis Thaliana] (GB:Q39012); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G14640.1); similar to shaggy-related protein kinase delta / ASK-delta / ASK-dzeta (ASK4) [Arabidopsis thaliana] (TAIR:AT2G30980.1); similar to BIN2 (BRASSINOSTEROID-INSENSITIVE 2), kinase [Arabidopsis thaliana] (TAIR:AT4G18710.1); similar to shaggy-like kinase etha (OSKetha) [Oryza sativa (japonica cultivar-group)] (GB:CAA73848.1); similar to putative shaggy-like kinase dzeta [Oryza sativa (japonica cultivar-group)] (GB:BAA92966.1); similar to Protein kinase [Medicago truncatula] (GB:ABE80751.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0607983421063203 0.573398881233535 0.581398855530753 1 0.940483492722912 14.5094325879578 0.0607983421063203 0.118296268849662
AT2G33370_at 9.0846953756371 9.26478002170868 8.51263318177087 8.63293389225208 9.30533310629156 8.74015732832286 8.92729741163077 8.78086913247901 8.44745179128073 8.42095125169442 8.92784827942376 9.11330566326531 8.5268765637886 8.50231907143022 9.28214949445815 8.39816741291007 8.29176706855942 8.33198456486096 8.84271818243708 0.137237976125204 0.134357459591979 0.129872794590278 0.135311589162225 0.133466790178227 0.142307240704173 0.127472176535697 0.13222574911645 0.148163465864908 0.131184292978692 0.127753952850198 0.130308513405690 0.126820650628021 0.128956451308314 0.133269840157764 0.130805536235776 0.137434412704069 0.138160584491585 0.129379975180218 2 2 - 14150826 14151329 14151172.545 14150630 14151797 - gene protein_coding_gene FALSE TRUE AT2G33370.1 60S ribosomal protein L23 (RPL23B) Identical to 60S ribosomal protein L23 (RPL23C) [Arabidopsis Thaliana] (GB:P49690;GB:Q8L8P0;GB:Q9SDB5); similar to EMB2171 (EMBRYO DEFECTIVE 2171), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT3G04400.1); similar to 60S ribosomal protein L23 (RPL23A) [Arabidopsis thaliana] (TAIR:AT1G04480.1); similar to ribosomal protein L17 [Castanea sativa] (GB:AAK25758.1); contains InterPro domain Ribosomal protein L14b/L23e; (InterPro:IPR000218) -0.0576087925857771 -0.572982606800754 0.58166807592551 1 0.940243059420484 17.5271754345822 -0.0576087925857771 0.107762855463241
AT3G28920_at 7.69802681845048 8.12573155374347 7.44131578681635 8.0388494005769 8.60128785540446 8.1194236979486 8.29291010239509 8.21080667980828 7.80105483313385 7.68773042899406 7.59843843636965 7.79102302150703 7.83524364715875 7.741938665084 7.69540687547377 7.96807802769128 7.68951890098803 7.5630168299283 8.05277820528572 0.171552297619885 0.173930466801982 0.174700137771176 0.173186875695566 0.171771893176241 0.196719267969611 0.1726217454028 0.171369136526106 0.183603450202397 0.175342170050253 0.171383078340117 0.166396913429211 0.170240445758861 0.180209216951391 0.174960988120459 0.164880366280214 0.172859167776693 0.17787856824768 0.164880366280214 3 3 - 10941847 10942387 10942086.545 10941683 10943070 - gene protein_coding_gene FALSE TRUE AT3G28920.1 ATHB34 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 34); DNA binding / transcription factor similar to ATHB23 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 23), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G39760.1); similar to Homeobox domain, ZF-HD class; ZF-HD homeobox protein Cys/His-rich dimerisation re (GB:ABE90495.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.071752187679429 -0.572877388195522 0.581736135722415 1 0.94018231230695 15.8573044233911 -0.071752187679429 0.152731089269257
AT1G73350_at 6.11161142902006 5.77557908722588 6.22789395252745 6.00992627536674 6.59933439469143 6.03263165429562 5.7311098013366 5.4536449562666 5.28630528188305 5.4062890715245 4.54521829190923 5.37023875275979 4.83066656283109 4.91316275984284 4.86990605665357 5.14037964971907 5.09566540108776 4.9002969959186 5.14567216019461 0.220740364529652 0.221604108510930 0.219484302193681 0.219613430169619 0.23166616154763 0.224134092943015 0.215550682585819 0.228502202441881 0.225023052836036 0.217803492666775 0.220608886435894 0.218818581879274 0.222247580241795 0.226294548251387 0.217280387600646 0.217233811848918 0.218413521775146 0.219424254669315 0.221113357323383 1 1 - 27579378 27580742 27579900.8 27579154 27580910 - gene protein_coding_gene FALSE TRUE AT1G73350.1|AT1G73350.2 similar to Os02g0637900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047530.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81144.1) 0.064114944198776 0.572440079477505 0.582019052639346 1 0.939929945620793 11.1115234338618 0.064114944198776 0.129336380722100
AT1G69270_at 7.01648614002406 7.61550301958102 7.64840376443936 7.51485889590825 7.75681848780847 7.51617826721967 6.73177866384096 6.87036307270856 5.4763467210792 5.45647493182659 4.53010892222377 4.56964488610042 5.68100570625138 5.52914331787938 3.53440272314039 5.05093144939207 5.85031344114294 4.84150172180656 5.20294069421439 0.229660653221582 0.218575020187401 0.223847300858425 0.216884006707529 0.21779385913478 0.219347397086089 0.220099817387377 0.224772884987786 0.225230474182001 0.216699368340059 0.217720411179911 0.214312565735496 0.216440940482623 0.216495729781831 0.230786188310386 0.216466348703342 0.223889252807777 0.230346260730473 0.221333410464402 1 1 - 26044608 26045055 26044843.364 26044352 26046365 - gene protein_coding_gene FALSE TRUE AT1G69270.1 RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1); kinase RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1. similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G02130.1); similar to Os07g0602700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060207.1); similar to putative protein kinase [Sorghum bicolor] (GB:AAM47583.1); similar to Os03g0756200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051315.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) 0.0601631008786684 0.572333227981055 0.582088191824065 1 0.939868309597343 12.4972832739574 0.0601631008786684 0.116573712514677
AT4G17080_at 7.7375294200195 7.97542264601403 7.50479723720774 7.32354609484997 7.8952796769079 7.92548235624319 6.4327591047156 6.84023849936739 7.30716833736201 6.85899728362539 6.19478068638557 6.27371562367084 6.1155661206613 6.58541481979213 5.97908456229117 6.7592702181953 6.84807105416929 6.21976304637553 6.50849115839638 0.196159597203756 0.189588078559745 0.192011714222409 0.194919721720308 0.18815411817052 0.189790266587606 0.191129314969474 0.191319584020745 0.194130441603412 0.187724390993131 0.202901087677812 0.200306683219330 0.193964232543280 0.192002835873508 0.198849943418626 0.187724390993131 0.197752529902784 0.198062409010999 0.189575526080265 4 4|0 +|/ 9602607 9603807 9603413.2 9601587 9603831 + gene protein_coding_gene FALSE TRUE AT4G17080.1 MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related similar to MORN (Membrane Occupation and Recognition Nexus) repeat-containing protein /phosphatidylinositol-4-phosphate 5-kinase-related [Arabidopsis thaliana] (TAIR:AT2G35170.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66263.1); similar to ICE-like protease p20 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66264.1); similar to Os10g0565000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065416.1); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.0519025347894408 -0.571946533129236 0.58233844413179 1 0.93964533772879 14.0861371425343 -0.0519025347894408 0.0876273397597792
AT2G22990_at 11.8383238466035 12.1043918248884 12.1075327147058 12.1916362652155 12.7574371784828 12.290538478464 12.5377227333677 12.6457690160962 12.8931346205300 12.8354116772175 13.1035819502998 12.9314399199420 13.0077155082991 13.0114546284675 12.6386864403633 13.0163092212008 12.5628661248475 12.8482242020898 12.7825841355682 0.0856305627623776 0.0850887402933417 0.0900742636255285 0.0869920208834194 0.0848888866814201 0.0980342067620765 0.0859744720995747 0.0844291490028811 0.0949773436667181 0.0847462443025193 0.0846450934143238 0.0850055483632016 0.0843327080912527 0.091585652424897 0.0844843970851448 0.0854085649967533 0.0948046896954806 0.0883411154405235 0.0855924562980275 2 2|0 +|/ 9795426 9796945 9796076.7 9793396 9797259 + gene protein_coding_gene FALSE TRUE AT2G22990.1|AT2G22990.2|AT2G22990.3|AT2G22990.4|AT2G22990.5 SNG1 (SINAPOYLGLUCOSE 1); serine carboxypeptidase sinapoylglucose:malate sinapoyltransferase. Catalyzes the formation of sinapoylmalate from sinapoylglucose. Mutants accumulate excess sinapoylglucose. similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.1); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL11 [Arabidopsis thaliana] (TAIR:AT2G22970.3); similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563)|similar to SCPL9, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23010.2); similar to SCPL10 (serine carboxypeptidase-like 10), serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G23000.1); similar to SCPL12, serine carboxypeptidase [Arabidopsis thaliana] (TAIR:AT2G22920.2); similar to Peptidase S10, serine carboxypeptidase [Medicago truncatula] (GB:ABE93325.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Peptidase S10, serine carboxypeptidase; (InterPro:IPR001563) 0.0541127878224388 0.571531050582187 0.582607393045504 1 0.93940592115654 25.1727081208333 0.0541127878224388 0.095968754043584
AT1G22710_at 11.0146837384249 11.4206374246777 11.0274159435770 11.1584814169549 11.6347964205446 11.0555298461165 11.6532548989802 11.6551495978525 10.7280087229442 10.9378438435666 11.2245852931446 11.3987971782560 11.5022033726759 11.0522872496745 11.0860820690664 11.5021258683112 11.0389037665049 10.8740422466282 10.9386081829217 0.09856745822087 0.094534042938959 0.0965636301542322 0.0987127309916914 0.0938474959054625 0.105483825060304 0.0948514787460099 0.0964807707338212 0.116214485110716 0.0933280063298282 0.096824163232299 0.0933280063298282 0.0933280063298282 0.107502165879417 0.101114751716630 0.0933280063298282 0.104271369836144 0.0950350619759012 0.093612337537376 1 1|0 -|/ 8030911 8031941 8031592.7 8030630 8033106 - gene protein_coding_gene FALSE TRUE AT1G22710.1 SUC2 (SUCROSE-PROTON SYMPORTER 2); carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter Encodes for a high-affinity transporter essential for phloem loading and long-distance transport. A major sucrose transporter, AtSUC2 can also transport a wide range of physiological and synthetic glucose conjugates with both α- or β-linkage. Identical to Sucrose transport protein SUC2 (Sucrose permease 2) (Sucrose-proton symporter 2) (Sucrose transporter 1) (SUC2) [Arabidopsis Thaliana] (GB:Q39231;GB:O80550;GB:Q8RWQ6); similar to ATSUC8 (SUCROSE-PROTON SYMPORTER 8), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT2G14670.1); similar to ATSUC5/SUC5 (SUCROSE-PROTON SYMPORTER 5), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G71890.1); similar to SUC1 (SUCROSE-PROTON SYMPORTER 1), carbohydrate transporter/ sucrose:hydrogen symporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G71880.1); similar to sucrose transporter SUC2 [Brassica oleracea] (GB:AAL58072.1); similar to sucrose carrier [Ricinus communis] (GB:CAA83436.1); similar to sucrose transporter SUC1 [Brassica oleracea] (GB:AAL58071.1); contains InterPro domain General substrate transporter; (InterPro:IPR005828); contains InterPro domain Sucrose/H+ symporter, plant; (InterPro:IPR005989); contains InterPro domain Sucrose/H+ symporter; (InterPro:IPR013002) 0.0624246446014751 0.570823415440281 0.583065615663359 1 0.93899852395803 22.3665096427295 0.0624246446014751 0.124494749094580
AT2G32730_at 8.4918625189539 8.62965225437328 8.60219230574248 8.54682836139958 8.37880574481487 8.5086829258697 8.3842306986103 8.5025110059754 8.0281106193427 8.01563185424526 8.24403919428166 8.2136588765577 8.00677864426669 8.23422004576656 8.56436665656148 8.34052896182114 8.00151387428227 7.9201484831726 8.29951939945381 0.146833841092012 0.140166917646997 0.139639858993083 0.136937177592475 0.137450922243576 0.145916666340694 0.141398096670302 0.146325717856872 0.159977465072731 0.147938544588923 0.139655792967658 0.139982665760043 0.150948645474067 0.141723669611776 0.143892800963218 0.140235847426684 0.150426912771309 0.144952470921045 0.140687465309556 2 2|0 +|/ 13891795 13892510 13892202.8 13887123 13892813 + gene protein_coding_gene FALSE TRUE AT2G32730.1 26S proteasome regulatory subunit, putative similar to 26S proteasome regulatory subunit, putative [Arabidopsis thaliana] (TAIR:AT1G04810.1); similar to Armadillo-like helical [Medicago truncatula] (GB:ABE85726.1); similar to B0402A04.3 [Oryza sativa (indica cultivar-group)] (GB:CAH67136.1); similar to 26S proteasome subunit RPN2A [synthetic construct] (GB:AAP82172.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Proteasome/cyclosome, regulatory subunit; (InterPro:IPR002015) 0.0416497163599727 0.570336612551629 0.583380956189005 1 0.938718533271165 16.6581344601854 0.0416497163599727 0.0398061430062365
AT1G68550_at 5.38759557988869 6.40824712279546 6.19388516400307 6.40858577984702 6.61350927781271 6.4687680302686 6.04944251854425 6.2559363466644 5.63851399017277 5.87449373472372 6.52997206609475 5.81938766034387 5.72715503612812 6.37718956495447 5.61271148542132 5.62668286501917 5.16647992648285 5.42758572994673 6.53676872002423 0.272775633600824 0.256127732557764 0.260648271227854 0.263715231940441 0.256127732557764 0.280956883931652 0.262822782482341 0.256127732557764 0.294694555190308 0.272230812477154 0.256127732557764 0.256127732557764 0.26616379075134 0.26437349211411 0.26335934322437 0.257698643144533 0.287050164042558 0.287228142067024 0.264616276445548 1 1 - 25729492 25729904 25729665.364 25729118 25731364 - gene protein_coding_gene FALSE TRUE AT1G68550.1|AT1G68550.2 AP2 domain-containing transcription factor, putative encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. similar to AP2 domain-containing transcription factor, putative [Arabidopsis thaliana] (TAIR:AT3G25890.2); similar to Os09g0309700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062835.1); similar to AP2 domain-containing transcription factor-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36231.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0825925322508279 0.569943001619743 0.583635997931377 1 0.938492303891447 12.1244900725309 0.0825925322508279 0.185694642148857
AT1G45000_at 9.82046408418522 9.89933802694953 9.62158863665029 9.86121184958718 9.79349185697935 9.43671067762613 9.92698329996133 9.97551323629507 9.5924323734209 9.44039334067252 9.71325436334 9.69834033051762 9.58287369476957 9.6379740307843 9.61289282642174 9.5406830766303 9.53389406542432 9.29517137376813 9.30838580189425 0.118751353696980 0.122329511706065 0.12453191243267 0.119030078695894 0.120399840897196 0.129040355779546 0.121247086170017 0.120216549815858 0.128392362205273 0.123079229354369 0.122123249135389 0.118089802808459 0.121589453345483 0.121288331147561 0.122114509718857 0.120856204834708 0.124149101395724 0.125385694686528 0.123240779064413 1 1|0 +|/ 17013186 17014011 17013655.5 17011581 17014326 + gene protein_coding_gene FALSE TRUE AT1G45000.1 26S proteasome regulatory complex subunit p42D, putative similar to RPT4A (regulatory particle triple-A 4A), ATPase [Arabidopsis thaliana] (TAIR:AT5G43010.1); similar to 26S proteasome regulatory particle triple-A ATPase subunit4b [Oryza sativa (japonica cultivar-group)] (GB:BAB78495.1); similar to AAA ATPase; 26S proteasome subunit P45; Nucleic acid-binding, OB-fold [Medicago truncatula] (GB:ABE79655.1); similar to 26S proteasome AAA-ATPase subunit RPT4a [Solanum tuberosum] (GB:BAC23035.1); contains InterPro domain 26S proteasome subunit P45; (InterPro:IPR005937); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0487544708796366 -0.569265416238508 0.584075186427136 1 0.938103195994594 19.3038906962974 -0.0487544708796366 0.0760827400213515
AT2G32170_at 8.29721107779041 8.38313503562638 8.13080863934875 8.14264236548371 8.53813319689554 8.52094109750274 8.31206880813682 8.34791085025089 8.26942963169795 8.34422192050529 8.73016757370257 8.64601812962011 8.24427800158845 8.41612294489098 8.46722367556663 8.57646467314554 8.17791724231022 8.23097275151771 8.45484378940442 0.186105423333657 0.173645367818601 0.175858276454321 0.18119949529294 0.176046597613755 0.175186962864648 0.176779056131136 0.173737516222915 0.197259901314358 0.182351201761045 0.178407309116162 0.182048556644819 0.189389131436786 0.180158716283306 0.182613815291869 0.170400800870658 0.182959475429702 0.187520183579872 0.176674372206140 2 2 + 13676859 13677940 13677331.7 13673533 13678181 + gene protein_coding_gene FALSE TRUE AT2G32170.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G32160.2); similar to Os05g0511300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056014.1); similar to hypothetical protein LOC503765 [Danio rerio] (GB:NP_001013361.1); contains InterPro domain N2227-like; (InterPro:IPR012901) 0.0390151960150562 0.56860513622087 0.584503333794302 1 0.937724435915037 16.7302617528354 0.0390151960150562 0.0165112504646478
AT4G23130_at 6.81599975840357 6.98058399704134 6.4444465568908 6.34676510263368 5.80397782999719 5.6083924288514 4.81871492362159 3.93178599245328 6.1210454999493 4.56145953077998 5.13885688334766 5.16879318641777 4.98531287570727 5.46569766088852 4.20308875877998 4.84862335848645 4.67622436488166 5.05043148788084 4.9441953217527 0.252112938031346 0.241203342950264 0.245622236093831 0.241203342950264 0.243433926594707 0.246008495947148 0.257706135282979 0.260843060542537 0.271750029114246 0.253789901052131 0.260367597210988 0.248661437429533 0.254758594154762 0.242367592480072 0.26148354995299 0.241203342950264 0.266251523805291 0.265497529386103 0.245825984456732 4 4 - 12117699 12118327 12117942.273 12117552 12120145 - gene protein_coding_gene FALSE TRUE AT4G23130.1|AT4G23130.2 CRK5 (CYSTEINE-RICH RLK5); kinase|CRK5 (CYSTEINE-RICH RLK5) Encodes a receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) similar to receptor-like protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G45860.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G23270.1); similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT4G23280.1); similar to receptor-like protein kinase homolog RK20-1 [Phaseolus vulgaris] (GB:AAD21872.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Protein of unknown function DUF26; (InterPro:IPR002902); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0736763831340488 0.56732050576216 0.585336826932756 1 0.93698868658376 10.9193476685080 0.0736763831340488 0.160626633311107
AT1G18950_at 5.29624055850334 5.26412620854236 5.04281375924798 5.12805702203741 5.18261981372437 5.43297016059992 5.470606613309 5.12256870398868 4.81782587482126 4.80242632688336 5.24652257528179 5.19927120254622 5.07241522415094 4.98587188806015 5.16010814718035 5.09459290314145 4.54922406884248 4.67529536646838 4.80745259541007 0.205271072667763 0.2087501054176 0.203491611441498 0.20382767983427 0.215652611899321 0.207467893631528 0.206857006751694 0.200864450844620 0.216700585600464 0.206960612323048 0.204449488866574 0.200061291554510 0.200383623268986 0.211774337249665 0.210580497870913 0.204285893617726 0.216958499060121 0.204431339838263 0.198440203852195 1 1 + 6551005 6551487 6551215.182 6546390 6551878 + gene protein_coding_gene FALSE TRUE AT1G18950.1 aminoacyl-tRNA synthetase family similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25580.1); similar to aminoacyl-tRNA synthetase [Trifolium pratense] (GB:BAE71190.1) 0.0484537037019896 0.566406474263523 0.585930267114605 1 0.936466124938699 10.1460741571594 0.0484537037019896 0.0758491756580717
AT3G48070_at 7.89872349003139 7.88908337878528 8.0529010624749 7.83095718754453 8.52065417277455 7.88005508672183 8.08009342001448 8.1064811217999 7.25839182926586 7.31484419584267 7.18173768975331 7.06485352567658 7.23046604052392 7.5716333100802 7.25293019139073 7.54492366068423 7.33172879389435 7.43557391344366 7.28106148056324 0.189704535142181 0.181624817892154 0.188839476741927 0.178297972383360 0.193295453139350 0.196137083157323 0.183214640808749 0.197564918640802 0.198635155472856 0.176692818824276 0.180390834773780 0.180633441880934 0.184009091937886 0.195467858231519 0.188715719319729 0.174156861745599 0.19585143179255 0.180954339897590 0.179038693011477 3 3 + 17762450 17762841 17762693.273 17761696 17763746 + gene protein_coding_gene FALSE TRUE AT3G48070.1|AT3G48070.2 protein binding / zinc ion binding similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G62910.1); similar to hypothetical protein LES1_20t00015 [Lycopersicon esculentum] (GB:ABI34275.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0597557900890715 0.566035681550354 0.586171100869329 1 0.936254360176274 15.3381169779708 0.0597557900890715 0.117424381973592
AT3G07470_at 8.9606648405421 9.04570893467378 9.0408692418111 8.89574403769595 9.21511989050145 9.16891050987347 9.88837083652604 9.53562537355248 9.76832656329179 9.1741602372555 10.6069853251217 9.77606750634053 9.75815031642345 9.95007199007888 9.93743939311034 9.49719005533106 9.36776018899717 9.59423878603111 9.37910372479958 0.110428750651390 0.109546352354689 0.107328998893276 0.110166242031858 0.107981952205982 0.108279384131120 0.114401929885465 0.115105706229459 0.114430431768379 0.110133844331960 0.111178930867890 0.107128771016221 0.10878473901254 0.117361537287506 0.111535914209009 0.109736204036119 0.110219056224319 0.116814647362241 0.107996531063749 3 3 - 2387326 2388306 2388019.636 2386903 2388477 - gene protein_coding_gene FALSE TRUE AT3G07470.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G07460.1); similar to hypothetical protein [Nicotiana tabacum] (GB:CAI84656.1); contains InterPro domain Protein of unknown function DUF538; (InterPro:IPR007493) 0.0465130968552774 0.564598566661617 0.587105036754733 1 0.935434812358196 18.8446357682945 0.0465130968552774 0.0681005814457915
AT2G36310_at 8.4123883734291 8.1834282231352 8.1453053938802 8.42869194622455 8.58902989179002 8.464138065875 8.52734359133875 8.20804401995257 8.64598479810025 8.25306811850235 8.83896950332668 8.35548805116798 8.26222366602183 8.48525041119253 8.36342321394002 8.15828077894677 8.13834760110664 8.40718795915983 8.14577963660803 0.162360958090365 0.150236866105541 0.166675483294491 0.154784580443838 0.149531071947155 0.152891201077922 0.153064837570615 0.160975720962148 0.168614788998647 0.149531071947155 0.149531071947155 0.149531071947155 0.149531071947155 0.157097973313277 0.152783952413981 0.158450534783272 0.160290008185381 0.161478104089354 0.154827274881178 2 0|2 /|- 15231825 15232598 15232133.111 15231576 15233951 - gene protein_coding_gene FALSE TRUE AT2G36310.1 inosine-uridine preferring nucleoside hydrolase family protein similar to inosine-uridine preferring nucleoside hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G05620.1); similar to putative inosine-uridine preferring nucleoside hydrolase [Zea mays] (GB:AAT00629.1); contains InterPro domain Inosine/uridine-preferring nucleoside hydrolase; (InterPro:IPR001910) 0.0509295764247235 0.564221003606477 0.587350538768076 1 0.935219817010848 16.7320081461255 0.0509295764247235 0.0865759246330517
AT3G57990_at 7.28867133221844 7.3394809859675 7.20721571011453 7.30632127378722 7.58760589594799 7.20704993181099 7.75458303941556 7.63102987970993 6.82616146548913 7.15261917140028 7.08419316263459 7.06151498371372 7.10563716849587 7.08180250335419 7.18206151432905 7.20357763464299 7.16498764573047 6.88934892008179 7.06590902961071 0.161061768031736 0.169998772554944 0.175123287146524 0.165030584602673 0.170173938778403 0.181891441597305 0.169570009795901 0.173977944476329 0.18458738422798 0.159043468395822 0.177830276714271 0.164909954214171 0.160600750345261 0.164433499282964 0.168890138270047 0.158315528060587 0.171130148925806 0.171133878140344 0.169756993755860 3 3 - 21481397 21481766 21481608.364 21480979 21482463 - gene protein_coding_gene FALSE TRUE AT3G57990.1 similar to Os08g0510800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062209.1); similar to HPr serine phosphorylation site [Medicago truncatula] (GB:ABE93056.1) -0.0473246101449418 -0.564092918971365 0.587433835776803 1 0.935146912038169 14.4710132546830 -0.0473246101449418 0.0718732830583398
AFFX-r2-Ec-bioC-3_at 9.56810849323524 9.74376519961834 10.0330835320473 9.72672886501038 9.47969492005155 9.6477229044074 9.43158788096273 9.75067650619557 0.0619474620862625 0.740903821581742 0.424933070958236 0.28410861168432 0.0888315815048563 0.181060607767860 0.498020773967545 0.737647974329403 0.623394163335165 0.68404526853907 0.506059827521424 0.354986409828998 0.355495798603921 0.358494742344084 0.356821975029225 0.354088317325461 0.358343812801133 0.355805387823017 0.354058363439227 0.35326256797088 0.362066533152656 0.35326256797088 0.35326256797088 0.363592253604242 0.35326256797088 0.35326256797088 0.357400662761292 0.35326256797088 0.363649255119487 0.359443232830977 NA NA NA NA NA FALSE FALSE 0.0511122940785942 0.564038695826891 0.587469100554315 1 0.935116053163025 10.1109505178114 0.0511122940785942 0.0873470876689675
AT3G23490_at 10.2265033081392 10.2627625972060 10.3670064441576 10.5117406131332 10.7967405846459 10.4107426176893 10.6292321170248 10.5491864950215 10.2632967608031 10.1399029196821 10.1179992976548 9.8222699223143 10.2843468251829 10.2639821706347 10.0513054651269 10.1044689941912 10.1270723856297 10.1668109680100 9.97735904470868 0.077703917814441 0.0771390482946236 0.0785128260989587 0.079425993933148 0.0769307901160724 0.0809579921232459 0.0786397340726876 0.0770863414313587 0.0910949778342428 0.0797518641161456 0.0792812476843534 0.0771208957526913 0.0781011833641568 0.079363895762105 0.0791786237882353 0.0766345083203218 0.0826547684469266 0.0794533873379939 0.0775538661839188 3 3|0 -|/ 8423447 8424378 8424180 8423018 8424659 - gene protein_coding_gene FALSE TRUE AT3G23490.1 CYN (CYANASE); cyanate hydratase cyanase Identical to Cyanate hydratase (EC 4.2.1.104) (Cyanase) (Cyanate lyase) (Cyanate hydrolase) (CYN) [Arabidopsis Thaliana] (GB:O22683); similar to Os10g0471300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064827.1); similar to putative cyanase [Oryza sativa] (GB:AAG21913.1); contains InterPro domain Cyanase; (InterPro:IPR008076); contains InterPro domain Cyanate lyase, C-terminal; (InterPro:IPR003712); contains InterPro domain Lambda repressor-like, DNA-binding; (InterPro:IPR010982) 0.0475327653768587 0.563627882778718 0.587736316321088 1 0.934882344687163 20.5913068031227 0.0475327653768587 0.0729429919705905
AFFX-PheX-3_at 4.6737694585742 5.09094182716045 5.71807635025768 4.70020843189924 6.54217312840242 4.70922288754611 6.97907623473017 4.7592481358367 7.13228289149015 7.59678834072546 6.833473764724 7.42994936430452 6.64327125481243 7.32846965292564 7.06260622064019 7.15910303645357 6.91617432189874 6.28892825108026 7.53335248525077 0.162034447612091 0.154451739395453 0.153198953789044 0.158162432876180 0.153507303264114 0.161835184205770 0.154738398762776 0.163270811046322 0.158236271574511 0.153139008534578 0.152221481819220 0.155168673136372 0.152611010399396 0.152570842612105 0.155025486875214 0.153875901280486 0.159741670024955 0.153397969706568 0.153224410659174 NA NA NA NA NA FALSE FALSE -0.210699818508109 -0.56305387664284 0.588109793734004 1 0.934556059956416 12.5858670013894 -0.210699818508109 0.533318178833968
AT4G04210_at 10.1774961158314 10.3667303053909 10.2650721918439 10.4310208295762 10.3620851124690 10.065883726928 10.4842684446331 10.4543722945009 10.0965591682934 10.3445968389615 10.4823731032140 10.3250694331351 10.1570999294806 10.1801966939382 9.90688475877985 10.0629436069638 10.0805289987429 10.0733749764902 10.0426987203395 0.0844479650233556 0.0832177653374147 0.0855162089356894 0.0819456974229617 0.0823203529406393 0.0920098563106898 0.0819456974229617 0.0838709444987001 0.0938721811340001 0.0819456974229617 0.0826077700770872 0.0831112366584066 0.0850682102771322 0.091962482682756 0.0857088771160254 0.0819456974229617 0.0918157334502189 0.0905994590231193 0.0819456974229617 4 4 + 2031071 2031636 2031463 2030317 2031850 + gene protein_coding_gene FALSE TRUE AT4G04210.1 PUX4 (LANT UBX DOMAIN-CONTAINING PROTEIN 4) Arabidopsis thaliana CDC48-interacting UBX-domain protein (PUX4) similar to PUX3 (LANT UBX DOMAIN-CONTAINING PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT4G22150.1); similar to phosphatase-like protein Mtc923 [Medicago truncatula] (GB:AAK12935.1); contains InterPro domain Protein of unknown function FAF1; (InterPro:IPR006556); contains InterPro domain UBX; (InterPro:IPR001012); contains InterPro domain SEP; (InterPro:IPR012989) -0.0462136482449393 -0.562669516173276 0.588359950866926 1 0.934337747771196 20.4857880510423 -0.0462136482449393 0.0674641503701744
AFFX-ThrX-M_at 3.46192724062076 3.68674279124992 5.01639830843617 3.55859180358662 5.97904373837841 3.75685242788818 6.35873791078554 3.68846100357764 5.98817125367598 6.93492014568785 5.99154800251735 6.58778746463277 5.48813431282977 6.0112107532314 5.38248241251868 6.30923288688479 5.11099280258133 5.42042530359093 6.80935702671629 0.163105057413465 0.162386103624425 0.164638088558126 0.166565362010635 0.162395036034655 0.165131157298807 0.162397491654941 0.164849920134586 0.171063071789899 0.161388912748848 0.159593238439277 0.157690108671235 0.159075879215143 0.165716681744575 0.161280100895784 0.159508311134535 0.164078322327754 0.163088614217523 0.159688287914468 NA NA NA NA NA FALSE FALSE -0.255500866665559 -0.560583401152969 0.589718694946336 1 0.933155259111566 10.6209491785863 -0.255500866665559 0.65313532770579
AT4G08240_at 6.70777527889422 7.04828784349345 6.58430736093045 6.844528731963 6.91048423862568 7.19875755490708 6.70475422800398 7.17544767596116 6.13847703051894 6.3195797022678 6.28506751154178 6.48262010702628 6.27640384921415 6.83121156725953 6.36945987688039 6.46177514548648 6.16396718026658 6.31687353928911 6.30271758236483 0.206490471480721 0.191928732870889 0.209507427119737 0.198533799084841 0.201089416021616 0.204491045025118 0.208219047499583 0.194136780541460 0.213990955814156 0.198026838761201 0.195929769652247 0.191910049231319 0.190954563577367 0.196390580950141 0.200706307242186 0.190954563577367 0.214898946927629 0.201849190272964 0.211108864105632 4 4|0 +|/ 5194718 5195680 5195150.778 5194668 5196758 + gene protein_coding_gene FALSE TRUE AT4G08240.1|AT4G08240.2 similar to Os02g0567000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047176.1); contains domain no description (G3D.4.10.850.10) 0.0601420618775133 0.559788116202026 0.590237137663236 1 0.932705529199978 13.2227997568496 0.0601420618775133 0.120930147788463
AT1G66680_at 8.1664231647107 8.4799953940065 8.0236623060183 8.02587723971163 8.38400837353307 7.93667711294658 7.59400168874452 7.73182324556193 7.81797712781227 7.32625296068052 7.58349490782314 7.39454142743942 7.04303770765364 7.54105888980256 7.18855907597789 7.44979789305284 6.97395163502468 7.19607204111538 7.36352248326596 0.197814467077166 0.196589287727332 0.200779203136559 0.193044055483792 0.191383851418319 0.199429445525449 0.193865332240766 0.191395242411460 0.222884599587642 0.195622568774567 0.192375667312585 0.195676670786739 0.201512957420623 0.209598136912039 0.195527421680063 0.192667017741672 0.206171411775425 0.210785430504123 0.198113914836934 1 1 - 24870017 24871752 24870484.273 24869758 24872655 - gene protein_coding_gene FALSE TRUE AT1G66680.1 AR401 unknown function similar to catalytic [Arabidopsis thaliana] (TAIR:AT3G60910.1); similar to SLL2-S9-protein [Brassica rapa] (GB:BAA77395.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) -0.0533873042767916 -0.559480358379549 0.590437830466048 1 0.932531651818856 15.4422577595654 -0.0533873042767916 0.0975009829289424
AT3G13480_at 7.07116797792779 7.61256548187768 7.50406614881526 7.76118683660491 8.00146429402115 7.101856784152 8.32717416873674 7.8106317590768 6.80010481199312 7.7231103907289 7.57054914284056 7.0565404371473 7.28296886400624 7.62419339972132 7.00292323907942 7.80211501687666 7.68285320523378 7.3486706776438 7.93223404296812 0.230986511416459 0.226089840195607 0.236219806402876 0.22509348683755 0.226276740908023 0.232754139107464 0.228077867635092 0.236834384536886 0.250233489950080 0.224750755899291 0.230937177556466 0.225558907446216 0.220226411201720 0.224955938568034 0.225465121664989 0.228079889026261 0.226772983269691 0.225298479086121 0.224495200492662 3 3 - 4393089 4393760 4393456.4 4392963 4393819 - gene protein_coding_gene FALSE TRUE AT3G13480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55475.1); similar to Os03g0795100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051545.1) -0.0885196658755845 -0.559297011529206 0.590557411009908 1 0.932428106272788 15.1020149295925 -0.0885196658755845 0.207328734785843
AT4G28750_at 13.6628015932541 13.7403026163041 13.7226753472331 13.6438272590304 13.7828649704716 13.6396822396083 14.0024918639441 13.9212511161261 14.3126991283423 14.4376322583277 14.7550396794625 14.7160032425850 14.6041968548443 14.4357578017322 14.6566556375581 14.5274516798784 14.2931486014686 14.5565697356426 14.3102248504574 0.066760301035583 0.066106210221132 0.0670200034526134 0.0679679224896405 0.068824291881875 0.072943946305088 0.0691687767992353 0.06687337619193 0.0717978432875782 0.0673521668862738 0.0687389309575654 0.068256300028421 0.0703082045984123 0.0738288506939103 0.066106210221132 0.0667592586161425 0.0725526205698468 0.0696537370763843 0.0666975356352326 4 4|0 -|/ 14202960 14203771 14203431.6 14202779 14203961 - gene protein_coding_gene FALSE TRUE AT4G28750.1 PSAE-1 (PSA E1 KNOCKOUT) mutant has Decreased effective quantum yield of photosystem II; Pale green plants; Reduced growth rate; Subunit E of Photosystem I Identical to Photosystem I reaction center subunit IV A, chloroplast precursor (PSI-E A) (PSAE1) [Arabidopsis Thaliana] (GB:Q9S831); similar to PSAE-2 (photosystem I subunit E-2) [Arabidopsis thaliana] (TAIR:AT2G20260.1); similar to Photosystem I reaction center subunit IV, chloroplast precursor (PSI-E) (Photosystem I 10.8 kDa polypeptide) (GB:P13194); contains InterPro domain Electron transport accessory protein; (InterPro:IPR008990); contains InterPro domain Photosystem I reaction centre subunit IV/PsaE; (InterPro:IPR003375) 0.0400674075580736 0.558915884485918 0.590806027992717 1 0.932212964222074 28.2252979506743 0.0400674075580736 0.034317565874173
AT2G39580_at 6.68660135184554 6.32790455208303 6.77398360915375 6.32661614779364 7.69545510045712 6.74922589101595 6.64358357358191 5.95263545427454 7.05568242454282 7.24868007796653 7.0145194130208 7.14938376006439 6.83319103613552 7.06461500216512 6.72463682109762 7.5114030821267 6.83932603467937 6.90527605837117 7.59297799514058 0.201444895453221 0.192153121186014 0.195621771914824 0.218937016534284 0.188253755358092 0.198885471790922 0.193125922634472 0.191892222557926 0.200881588891192 0.182242620750096 0.182154353287622 0.184802685305571 0.187776648923017 0.196475362295042 0.194145041374220 0.186535005237793 0.219019797576776 0.188390771255224 0.182154353287622 2 2 + 16523435 16523800 16523645.273 16517503 16524151 + gene protein_coding_gene FALSE TRUE AT2G39580.1 binding similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98988.1); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0949096779499032 0.558812302779275 0.590873606340262 1 0.932154516891143 13.7967044101128 0.0949096779499032 0.225739183308389
AT4G20330_at 7.99189886710052 7.8979089036424 8.25357854107061 7.9176466333932 8.53255314193272 7.61287220939654 7.9271014455268 7.64054917461794 7.13129576058376 7.34458204221913 7.40564429069408 7.18554784095856 7.23231359025535 7.41281078647228 7.21274235008532 7.46558852326084 6.94912570395485 6.9240837779229 7.3710158923149 0.192465144923444 0.190059118988715 0.195165091339708 0.199455961847847 0.189730306917313 0.199320228423211 0.186733650184508 0.185925229453754 0.208658612857359 0.193784442237226 0.186512562565998 0.183294482206671 0.192584176533161 0.199601053117751 0.185906806638174 0.183294482206671 0.211040541050098 0.189549455757088 0.194105460347687 4 4 - 10982696 10983683 10983073.182 10982528 10984532 - gene protein_coding_gene FALSE TRUE AT4G20330.1 transcription initiation factor-related similar to transcription initiation factor-related [Arabidopsis thaliana] (TAIR:AT4G21010.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71261.1); contains domain FAMILY NOT NAMED (PTHR12716); contains domain SUBFAMILY NOT NAMED (PTHR12716:SF4) 0.0779911216521407 0.557819966695922 0.59152123596553 1 0.931595085487161 15.2246536177467 0.0779911216521407 0.177295291189888
AT1G19170_at 5.09807300310973 5.87003742176736 5.34404703395861 5.82392037902181 5.5309226699991 4.98146183064003 5.38934051244792 5.57481352523512 5.01891742227885 4.72740638535788 4.86816353267287 5.29818951027773 4.79218801333564 5.43931894466683 5.61839429579576 5.21627077094914 4.90706676746998 4.69014751978137 4.88930049191825 0.211259511812754 0.213132560945691 0.21393281067729 0.209175348655923 0.231661436592154 0.215912133418021 0.2124611535215 0.221721164879173 0.221487160893924 0.209303606803583 0.211759533095872 0.208827904295544 0.221165768158802 0.208827904295544 0.214749518980360 0.208827904295544 0.218140079215357 0.212405110699285 0.210178107795248 1 1|0 +|/ 6618190 6618840 6618562.8 6616634 6618977 + gene protein_coding_gene FALSE TRUE AT1G19170.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT3G42950.1); similar to Os09g0439400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063274.1); similar to Glycoside hydrolase, family 28 [Medicago truncatula] (GB:ABE90955.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334); contains InterPro domain Parallel beta-helix repeat; (InterPro:IPR006626) 0.0810989244742628 0.55753867383476 0.59170488691055 1 0.931436673205111 10.4427064732993 0.0810989244742628 0.186587514721133
AT2G47350_at 5.03086880248458 4.78903445327854 5.2545322450044 4.87656212954428 5.11525094427142 5.20895030772744 5.29536898089995 4.54836243169756 5.23732698586012 4.90395204102705 4.91373501448864 4.73533338538258 4.30607756868789 4.31033404817061 4.84164064435038 4.76600344113342 4.97787292141382 4.71971578480334 4.95825916962522 0.210339364136178 0.199637178907908 0.208781168642348 0.209496810916821 0.195952071635251 0.209360972440065 0.201487818867267 0.201641744945995 0.208689172433491 0.201861800649454 0.198658717792049 0.197900625217714 0.207221008161251 0.206157471268126 0.207314762234508 0.198041837299077 0.200774846663554 0.200267745438592 0.220793587692188 2 2 + 19442972 19444089 19443625.182 19440861 19444319 + gene protein_coding_gene FALSE TRUE AT2G47350.1|AT2G47350.2 PAPA-1-like family protein / zinc finger (HIT type) family protein similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT1G56460.1); similar to PAPA-1-like conserved re (GB:ABA98935.1); contains InterPro domain PAPA-1-like conserved region; (InterPro:IPR006880); contains InterPro domain Zinc finger, HIT-type; (InterPro:IPR007529)|similar to PAPA-1-like family protein / zinc finger (HIT type) family protein [Arabidopsis thaliana] (TAIR:AT3G06660.1); similar to PAPA-1-like conserved re (GB:ABA98935.1); similar to PAPA-1-like conserved re (GB:ABG22046.1); contains InterPro domain PAPA-1-like conserved region; (InterPro:IPR006880) -0.0694625291184506 -0.557331340469154 0.591840270958251 1 0.931319959060185 9.87962553680917 -0.0694625291184506 0.151671688185404
AT4G18975_at 7.57331983524905 7.27614159633697 7.76516173998878 7.72400441586236 8.09217611737453 7.6219179293148 8.03807126141744 7.86677506781226 8.0220876046421 7.84860287559535 7.92906226991792 7.76273747386699 7.89159531660493 8.11097788447026 7.69326030811518 8.16230388451495 7.2258801771568 7.89903881896197 7.64564841418797 0.146759714380338 0.141851366227174 0.155481169643285 0.138285496777627 0.146839455048853 0.155352733661297 0.136531194590263 0.138811664445016 0.156794791363253 0.137304188745645 0.140847541054838 0.136011297750737 0.139652378301431 0.139807358012334 0.142625906669385 0.13684855160196 0.163531575659356 0.140281473716196 0.138561203445614 4 0|4 /|- 10392247 10392860 10392540.556 10391976 10393904 - gene protein_coding_gene FALSE TRUE AT4G18975.1|AT4G18975.2 pentatricopeptide (PPR) repeat-containing protein similar to EMB1417 (EMBRYO DEFECTIVE 1417) [Arabidopsis thaliana] (TAIR:AT4G21190.1); similar to Os07g0545900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059918.1); similar to Os01g0757700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044296.1); similar to Os12g0123100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066030.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885) 0.0539077478285852 0.554999605601535 0.593364003401825 1 0.930010119200577 15.5812643195077 0.0539077478285852 0.100980618686512
AT3G07800_at 8.48152371044419 8.68124362875966 8.75451630353836 8.60372112786413 8.43091297788938 8.50652832948424 8.13273661574618 8.0534396609402 8.88661321827858 8.0324087062822 7.80624192380673 8.05852191762432 7.74446922770649 8.02961107137012 8.27555668342664 7.75628786670309 8.06231327599052 8.06863256261891 7.96634221293683 0.130775379122232 0.132079606891275 0.130991877716356 0.130334318362316 0.134749849133353 0.132727998233047 0.128256485480200 0.132335186775532 0.134492596004839 0.132710174485252 0.133554101543622 0.134543245004121 0.134041026431082 0.13065462031116 0.135210653055964 0.131603178820172 0.130813782932996 0.132936811967313 0.132789619718708 3 3 - 2489957 2490779 2490248.182 2489393 2491093 - gene protein_coding_gene FALSE TRUE AT3G07800.1 thymidine kinase, putative similar to thymidine kinase, putative [Arabidopsis thaliana] (TAIR:AT5G23070.1); similar to TK1-like deoxyribonucleoside kinase [Lycopersicon esculentum] (GB:AAQ08180.1); contains InterPro domain Thymidine kinase; (InterPro:IPR001267) -0.0416166411442733 -0.554017539743676 0.594006397529436 1 0.929459968564088 16.5907406419942 -0.0416166411442733 0.047276848935787
AT1G34000_at 11.3135176610387 11.4215140289507 11.2804901092721 11.2944385586292 11.7529005753017 11.2671172747327 12.0474507549460 11.9684965631287 11.7860341725191 11.6673853072129 12.1124378472537 11.8859663072335 12.0511232064748 11.850004124985 11.8677273415922 12.0186418745157 11.5094787852152 11.9285802193709 11.6893754604852 0.0934342325326702 0.0915463039751435 0.098272124033407 0.0947993623012892 0.0962200293558146 0.0963635364074098 0.0962325908827422 0.0946891326760779 0.100668903113257 0.092118963734998 0.0952515548569147 0.0940923454486858 0.0915841619376228 0.101522699718809 0.0997601605973418 0.0943891913918584 0.104032709608568 0.0953910217585226 0.0915463039751435 1 1|0 -|/ 12358146 12358856 12358611.8 12357890 12358946 - gene protein_coding_gene FALSE TRUE AT1G34000.1 OHP2 (ONE-HELIX PROTEIN 2) Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions. similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE81198.1) -0.0501390696371751 -0.553627093548248 0.594261903151529 1 0.929241492041276 23.3518706624513 -0.0501390696371751 0.0872300146306662
AT4G10930_at 5.86961232344169 5.30800401288353 5.1557173387482 5.55949983315325 4.99333272567439 4.90099724230054 4.64290680845646 4.49694949896832 4.60544843114808 4.57791470523106 4.52723643726902 4.35497616848452 4.59925829030065 4.98119582286424 4.36295687095781 4.68734227673836 5.1039986543577 4.5454844542706 4.61039241136633 0.238304784144184 0.237612416228331 0.240170280631909 0.239622286194109 0.231227464738765 0.238361569312002 0.227495449040848 0.233277563226273 0.246591035467151 0.226979860008123 0.231599217087031 0.234916831049257 0.232272084171025 0.235528378742411 0.234989918790175 0.226979860008123 0.228597386157767 0.242549388749217 0.228167077750727 4 4 - 6705186 6705829 6705582.636 6705143 6708842 - gene protein_coding_gene FALSE TRUE AT4G10930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA96698.2) 0.0602031150109015 0.553573136513306 0.594297216998674 1 0.929211311262594 9.73748979186356 0.0602031150109015 0.123376394284874
AT1G55300_at 5.61213160520541 5.97456891622976 4.9917370919916 5.1263046209687 6.74583452948847 6.55386167879893 5.6720626810578 6.37914574259686 5.76885279269276 5.09526838634155 5.64466868383759 5.71800205569143 5.78840946572242 6.15977801676629 5.22118000699461 5.07676287600021 4.34706661268647 5.72667915940301 5.74954528124237 0.225307068764210 0.221599698112279 0.235830502730404 0.224925428012095 0.234796575023657 0.223920304820749 0.236499256199518 0.221524717194454 0.236134736554458 0.233066751555914 0.223467693125359 0.223355201474702 0.227187136283364 0.228192031874138 0.233919313514072 0.226758538579439 0.264850487437397 0.225109992337333 0.221524717194454 1 1|0 -|/ 20631905 20633121 20632515 20631690 20633359 - gene protein_coding_gene FALSE TRUE AT1G55300.1|AT1G55300.2 TATA-binding protein-associated factor TAFII55 family protein|transcription factor similar to unknown [Solanum tuberosum] (GB:ABA81879.1); contains InterPro domain TAFII55 protein conserved region; (InterPro:IPR006751)|similar to TAFII55 protein conserved re (GB:ABE89966.1); contains InterPro domain TAFII55 protein conserved region; (InterPro:IPR006751) -0.066306608207501 -0.553203645582434 0.5945390723424 1 0.929004710242745 11.3810594481572 -0.066306608207501 0.143362943035444
AT3G50950_at 10.312994387447 10.3883645605541 10.2841205875313 10.3832635298449 10.0310535908776 9.77669310719908 9.5471322779297 9.45964856165823 10.1594423659620 9.37732977244703 9.42701282684294 9.44870966962695 9.27233518179586 9.57136745646173 9.08758512951663 9.4019945726472 9.2728826642967 9.87793724718997 9.55184660202864 0.080302269783236 0.07654474783493 0.0840650382891772 0.0788232433498712 0.0799740721635964 0.0801884758528332 0.0773565781383172 0.0767208343137322 0.0772961774921502 0.0757868997774572 0.078953672149533 0.0765274802287883 0.0785521071793514 0.0790876809389748 0.0809251924333992 0.0779402546973444 0.0757041194531785 0.0787338565280278 0.0736970442371949 3 3 + 18949101 18949581 18949376.909 18946656 18949780 + gene protein_coding_gene FALSE TRUE AT3G50950.1|AT3G50950.2 disease resistance protein (CC-NBS-LRR class), putative Identical to Putative disease resistance RPP13-like protein 4 (RPP13L4) [Arabidopsis Thaliana] (GB:Q38834;GB:Q9SVK4); similar to RPP8 (RECOGNITION OF PERONOSPORA PARASITICA 8) [Arabidopsis thaliana] (TAIR:AT5G43470.2); similar to myosin heavy chain homolog (GB:AAA63149.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.0422401981496603 -0.553146374300297 0.594576564822637 1 0.928972698403389 19.5810009955601 -0.0422401981496603 0.0512962287985616
AT3G21630_at 8.29932081357996 8.54014253064912 8.31364024207483 8.44924633585554 8.06155442022834 7.78131358378696 7.48772840153518 7.65118800645911 8.13879009058026 7.89460820220713 7.87556047654435 8.13392340515545 7.58558986898376 7.67304469013947 7.49799082000746 7.6750846211123 7.52961083286003 7.58898107920207 7.80279969552691 0.174650837578204 0.176677687292278 0.179213294638445 0.17965781940595 0.173488812026619 0.177797710570923 0.173098804934619 0.184572498266271 0.18717425946543 0.182002237938583 0.184415429279163 0.168696745170608 0.174292706543001 0.178276445733668 0.174603131407532 0.176285213961645 0.184348952451919 0.191528440980434 0.178307564902652 3 3|0 -|/ 7615555 7616615 7616018.4 7615392 7618588 - gene protein_coding_gene FALSE TRUE AT3G21630.1 protein kinase family protein similar to protein kinase family protein / peptidoglycan-binding LysM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G51940.1); similar to LysM domain-containing receptor-like kinase 7 [Medicago truncatula] (GB:AAQ73158.1); similar to Nod-factor receptor 1a [Lotus japonicus] (GB:CAE02589.1); similar to Nod-factor receptor 1b [Lotus japonicus] (GB:CAE02590.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Peptidoglycan-binding LysM; (InterPro:IPR002482) -0.0467911988784582 -0.552637176219209 0.594909966263541 1 0.928688216472286 15.8932030686155 -0.0467911988784582 0.0737542006349492
AT1G69510_at 9.79866369367672 9.74901867801514 10.2530767444043 10.1795349556745 10.4184697123714 9.87653410834299 10.5313736041424 10.2350160089824 9.938686765193 10.3129875767710 10.0649774323273 9.868363692765 9.8785545119754 9.86180934198366 9.59304825525952 9.95723317353209 10.0695892589839 10.0349469467851 10.1401355153000 0.111890979927911 0.108289592227633 0.112172521001013 0.110287951283676 0.106999166378041 0.120117082906659 0.108373152571145 0.107550862658826 0.119878151964507 0.105146309677932 0.109784174285333 0.105146309677932 0.106380841264605 0.117362543566141 0.114457832152245 0.106403219764478 0.114183729073804 0.112024226405256 0.105146309677932 1 1|0 +|/ 26130471 26131352 26131028.375 26130013 26131624 + gene protein_coding_gene FALSE TRUE AT1G69510.1|AT1G69510.2|AT1G69510.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G64130.1); similar to Os01g0249300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042590.1); similar to negatively light-regulated protein [Vernicia fordii] (GB:AAD05437.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAU10659.1); contains InterPro domain Lg106-like; (InterPro:IPR012482) -0.0555760375295222 -0.552131124381908 0.595241408061141 1 0.928405732505542 20.1535452444293 -0.0555760375295222 0.107988751126318
AT2G01060_at 9.08665638334618 9.36992042818996 9.21934296514944 9.21155007420296 9.65257598486465 9.24809276628526 8.79980020912315 8.66039685809665 8.79765696828495 8.63617400642829 8.22683981915727 8.10644597271919 8.22783954447644 8.59209933098826 7.69810102246407 8.51198501837985 7.89300317165338 8.16471691124644 8.46241848786992 0.168428123448742 0.167611734958803 0.173325539243286 0.170026247058029 0.166971771100840 0.175971425937448 0.167646305021525 0.167542575740567 0.176050451570341 0.169797111318545 0.172882279585712 0.173545442503504 0.166541228732202 0.171520009379829 0.179478982085800 0.169509184105746 0.189136448024588 0.170413376656250 0.16813188878759 2 0|2 /|- 73489 73853 73669.1 73258 75388 - gene protein_coding_gene FALSE TRUE AT2G01060.1|AT2G01060.2 myb family transcription factor similar to transcription factor [Arabidopsis thaliana] (TAIR:AT3G04450.1); similar to MYB-CC type transfactor [Solanum tuberosum] (GB:BAE46413.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G13040.2); similar to MYB-CC type transfactor [Solanum tuberosum] (GB:BAE46413.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.050378663686089 -0.551846407990505 0.595427928802077 1 0.928246905815596 17.5608979601973 -0.050378663686089 0.0888057482092784
AT4G31340_at 8.84073753006558 8.79254081921631 8.7131564130067 8.64807603302647 8.98421406093941 8.4142762627505 9.00921298793626 9.02950662854462 8.86652162893139 8.71669650531368 9.0004628766917 9.13261340018353 9.01697820452703 9.13126213065926 9.11882130438236 8.73024904087675 8.42607674070587 9.03507116612491 8.89873981443362 0.131421511963294 0.129471966842189 0.129958768310195 0.133547245156958 0.135144118062751 0.131629677637806 0.133748012591436 0.129895773627592 0.135473904378885 0.133131742849305 0.140709363185109 0.129150125144182 0.130159463658992 0.130222200442203 0.140468475764200 0.126049289421004 0.147177318258442 0.133955186281699 0.133888225293577 4 4|0 +|/ 15208059 15208906 15208504.75 15205486 15209607 + gene protein_coding_gene FALSE TRUE AT4G31340.1|AT4G31340.2 myosin heavy chain-related similar to DNA repair ATPase-related [Arabidopsis thaliana] (TAIR:AT2G24420.2); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93369.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Protein kinase PKN/PRK1, effector; (InterPro:IPR011072) -0.0532231286086116 -0.551588189690913 0.595597117730091 1 0.928102926434366 17.6920956790583 -0.0532231286086116 0.0996829871125745
AT2G40970_at 5.79760408070216 5.90868289077582 4.76096291475633 4.99097129392638 6.16929364750626 6.27310217644194 5.70847297273406 5.93613569437374 5.90548722209385 5.45278412632876 5.94384679635751 6.08337532849487 6.49837806473301 6.17123833052355 5.69311885480666 6.59615247653809 5.80025574461294 6.4254857216776 5.96429155563405 0.191983151588399 0.192652789526009 0.203207809165345 0.203334396914134 0.194996186684373 0.197311895152077 0.186914045430423 0.188967335049036 0.199873603319994 0.188035050536431 0.191469498444767 0.18765942663036 0.188214127576977 0.197760402446404 0.199426338870594 0.197804271451474 0.212649380353276 0.191995874627733 0.194933985786033 2 2 - 17104851 17105418 17105156 17104628 17105773 - gene protein_coding_gene FALSE TRUE AT2G40970.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G10760.1); similar to NbPCL1 [Nicotiana benthamiana] (GB:BAE16280.1); similar to Os05g0412000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055539.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0440761892718804 0.550880216981248 0.596061126712293 1 0.927708489434253 11.6559877336039 0.0440761892718804 0.0618773598762919
AT1G75370_at 9.26178687989223 9.12277375423021 9.4715371729421 9.22022336357063 10.1661766631840 9.46855529874394 10.1935213701713 9.56896990478684 9.3875740596469 9.67216976264696 9.90626228960142 9.59095728491014 9.5182486020417 9.74367796172426 9.19044973341452 9.5559360316373 9.62081400703648 9.57233898264003 9.39075869054364 0.128470352016563 0.123604229037603 0.130368120171412 0.131844180031058 0.123395402626843 0.127712014212536 0.121935577502699 0.124379056821863 0.134952816699102 0.124225156158218 0.123295218242913 0.123470356429646 0.120416977415977 0.133452492982406 0.125353303095653 0.127887150145997 0.130770750323901 0.126573981018339 0.128252945494483 1 1 - 28280250 28280978 28280730.909 28280087 28283559 - gene protein_coding_gene FALSE TRUE AT1G75370.1 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT4G39170.1); similar to SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative [Arabidopsis thaliana] (TAIR:AT1G19650.1); similar to putative phosphatidylinositol/ phophatidylcholine transfer protein [Oryza sativa (japonica cultivar-group)] (GB:BAD07999.1); similar to Cellular retinaldehyde-binding/triple function, N-terminal [Medicago truncatula] (GB:ABE79642.1); similar to phosphatidylinositol transfer-like protein III [Lotus japonicus] (GB:AAK63247.1); contains InterPro domain Phosphatidylinositol transfer protein-like, N-terminal; (InterPro:IPR011074); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251); contains InterPro domain Cellular retinaldehyde-binding/triple function, N-terminal; (InterPro:IPR008273); contains InterPro domain Cellular retinaldehyde binding/alpha-tocopherol transport; (InterPro:IPR001071) 0.0743474606766354 0.550210590460569 0.596500183302374 1 0.927335848069658 19.0946112755593 0.0743474606766354 0.169489651237584
AT2G45960_at 12.1230823599476 12.2009835761020 12.317091208382 12.4934923072146 12.5685394318354 12.4564830842314 12.7319077783211 13.0014360812103 12.7196498429555 12.6989711634572 12.9523810176671 12.8388316547495 13.0309184246120 12.8342198634594 12.7303921850869 12.8498093917281 12.7670221158993 12.8710527210117 12.7305735285565 0.0736593808471199 0.0714522220996014 0.0763488961601685 0.0714522220996014 0.0731353535451507 0.0781820698020015 0.0728047841185463 0.0720832186754436 0.0740956826877176 0.0724078696110232 0.0721845545882248 0.0724269404552116 0.0714522220996014 0.0737942343917589 0.0742313188145225 0.0731532624057135 0.072583093691462 0.0714522220996014 0.0718079110071548 2 2|0 +|/ 18918115 18918731 18918309 18917368 18919055 + gene protein_coding_gene FALSE TRUE AT2G45960.1|AT2G45960.2|AT2G45960.3 PIP1B (plasma membrane intrinsic protein 1;2); water channel|PIP1B (plasma membrane intrinsic protein 1;2) a member of the plasma membrane intrinsic protein subfamily PIP1. localizes to the plasma membrane and exhibits water transport activity in Xenopus oocyte. expressed ubiquitously and protein level decreases slightly during leaf development. Identical to Aquaporin PIP1.2 (Plasma membrane intrinsic protein 1b) (PIP1b) (Transmembrane protein A) (TMP-A) (AthH2) (PIP1.2) [Arabidopsis Thaliana] (GB:Q06611;GB:Q8L5V4); similar to PIP1A (plasma membrane intrinsic protein 1,1) [Arabidopsis thaliana] (TAIR:AT3G61430.2); similar to aquaporin PIP1b1 [Brassica oleracea] (GB:AAG23179.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) 0.0437396512371211 0.550030122144798 0.596618541556995 1 0.927235490807096 25.2744902784555 0.0437396512371211 0.060541456608311
AT4G09550_at 6.36402088374761 6.35582282709709 4.76711064110721 5.3283888182037 5.92417954846746 5.8463137982784 4.68979663080244 5.21218359070824 5.89612670179387 5.77422738803325 6.29127164057008 6.33758616807108 5.995225775623 6.42513154805842 6.87285848062664 5.47119152479671 5.48168084398827 5.97866071657959 5.70606512158043 0.199365568927331 0.193008052206157 0.205228661362555 0.193008052206157 0.200414575160501 0.210793548949449 0.208632463153013 0.203311631384316 0.20630825537995 0.197774242615145 0.197307413808530 0.199330105360709 0.193700887953261 0.197433434295435 0.200012483149208 0.198608859078596 0.194235749742904 0.200065462384597 0.200317671207052 4 4 + 6039708 6039859 6039776.273 6039115 6040212 + gene protein_coding_gene FALSE TRUE AT4G09550.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G73790.1); similar to Os03g0435900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050438.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89222.1); similar to Os03g0824000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051747.1) 0.062801659289363 0.549735108337204 0.596812050601449 1 0.927071501192024 11.5103973795141 0.062801659289363 0.133381438537795
AT4G30520_at 3.94275226786118 4.78503703756669 4.92933302561915 5.07312397882219 5.77627785301672 5.22677952266199 6.67560260151715 6.5725532054051 4.45759597549813 5.40654684169391 4.63717624555570 5.29108495961821 5.59691326745003 5.27077763838077 4.78271738406341 5.83386228965771 5.75994831515651 5.00225222125525 5.68233564880275 0.266128218610569 0.265480499294515 0.269095119470761 0.265480499294515 0.269847723731843 0.283188764219764 0.267057173893365 0.273134425093556 0.268750667177238 0.265774996718155 0.267088608692810 0.265480499294515 0.271806671754897 0.265480499294515 0.267830233493127 0.265480499294515 0.278154258782452 0.265480499294515 0.265480499294515 4 4 - 14908206 14908864 14908496.455 14908006 14911313 - gene protein_coding_gene FALSE TRUE AT4G30520.1 leucine-rich repeat family protein / protein kinase family protein similar to leucine-rich repeat family protein / protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G23950.1); similar to NIK1 (NSP-INTERACTING KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT5G16000.1); similar to NIK2 (NSP-INTERACTING KINASE 2), protein kinase [Arabidopsis thaliana] (TAIR:AT3G25560.1); similar to Leucine-rich repeat, typical subtype [Medicago truncatula] (GB:ABE94689.1); similar to leucine-rich repeat receptor-like kinase [Populus tomentosa] (GB:ABG73621.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96874.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.076462815790128 -0.548275312579473 0.597770076309534 1 0.926261242381393 10.5996829509623 -0.076462815790128 0.176709663912674
AT1G09180_at 4.74585264686439 4.99453017294339 4.90111687084124 5.03239774183381 5.26636131847318 4.7388548070269 6.28694760749611 5.97716961174598 4.25289346960211 5.00461809308919 5.64639379661201 5.21722019382172 5.24808797557045 5.70624466400731 5.07667010310737 5.52232726636868 5.1860802554619 4.91759035678523 4.79273076768785 0.232400373529463 0.222641743030440 0.229119160837479 0.231952766999295 0.222641743030440 0.229731492966677 0.229891481187007 0.240494253466896 0.241083035698814 0.222641743030440 0.222641743030440 0.222641743030440 0.235711469856670 0.227040606527604 0.241542558554927 0.225134357601626 0.240082694741045 0.232293924334151 0.231283735639297 1 1 + 2965166 2965872 2965622 2965025 2965974 + gene protein_coding_gene FALSE TRUE AT1G09180.1 ATSAR1/ATSARA1A (ARABIDOPSIS THALIANA SECRETION-ASSOCIATED RAS SUPER FAMILY 1); GTP binding A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. similar to SAR1 (SECRETION-ASSOCIATED RAS), GTP binding [Arabidopsis thaliana] (TAIR:AT1G56330.1); similar to GTP-binding protein SAR1A (GB:O04266); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.057610195560884 0.548213003738946 0.597810986420902 1 0.926226702307233 10.2421493154497 0.057610195560884 0.116513568944995
AT1G19360_at 8.43678142115076 8.56720282821912 8.11729737895667 8.13143566715884 8.57620324634316 8.1317372509907 8.02850178781632 7.85903464844416 7.99484001382444 7.17577946387046 7.61555221341321 7.79791663209437 7.54686029032655 7.5556783715211 7.73541501603939 7.51652322174233 7.52496858174932 7.82821933014556 7.50375508876981 0.176150943454504 0.167415012980195 0.178674842800147 0.182058779009062 0.173210367929209 0.176928405384865 0.172109186375209 0.167415012980195 0.182561493320951 0.180163828652778 0.181959270402367 0.167415012980195 0.174351325835166 0.173111969291583 0.175882220542459 0.171320610987490 0.185742550230430 0.17737038108628 0.176823971258917 1 1 - 6690711 6691216 6690998.636 6690447 6692468 - gene protein_coding_gene FALSE TRUE AT1G19360.1 similar to RRA2 (REDUCED RESIDUAL ARABINOSE 2) [Arabidopsis thaliana] (TAIR:AT1G75110.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC83249.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0491525330477443 0.547805122908025 0.598078825997344 1 0.926000688844852 15.8301575599436 0.0491525330477443 0.0853913451306335
AT2G41630_at 7.26765808568101 7.57116518010573 7.30936177717747 6.97974486070741 7.51695902036711 7.57347926750575 7.31865322454702 7.77579649527422 7.17394495714972 7.09795270561219 7.51111971503384 7.81391907942742 7.3932563858754 7.77343560756394 7.40134797568051 7.4449980799257 7.27973287589295 7.03031377997339 7.34482975019954 0.174232628978655 0.171870044333578 0.184915577489723 0.184343175841897 0.179057183242169 0.185105481393537 0.18708278281816 0.169418830925958 0.184049036405205 0.176280705871595 0.176873212590489 0.173971041165875 0.171446967925863 0.179517726269381 0.168662522917151 0.179577027233981 0.191727625683071 0.176795302639052 0.173673642640961 2 2 - 17362636 17363511 17363153.636 17362409 17364676 - gene protein_coding_gene FALSE TRUE AT2G41630.1 TFIIB (TRANSCRIPTION FACTOR II B); RNA polymerase II transcription factor Encodes the transcription factor TFIIB. Identical to Transcription initiation factor IIB-1 (General transcription factor TFIIB-1) (AtTFIIB1) (TFIIB1) [Arabidopsis Thaliana] (GB:P48512); similar to transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) [Arabidopsis thaliana] (TAIR:AT3G10330.1); similar to Transcription initiation factor IIB (General transcription factor TFIIB) (GB:P48513); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Zinc finger, TFIIB-type; (InterPro:IPR013137); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0560038090693005 0.547384451979721 0.59835513207821 1 0.925767751463396 14.7448978597918 0.0560038090693005 0.111205413905148
AT3G55360_at 8.2966340798781 8.42542579858517 7.91073799683925 7.99460834197049 8.29507658564568 8.7138846147247 8.92709304665245 9.54504541868579 9.67231220695755 8.82216728430538 10.3334443133578 10.2331602789534 9.56272273640171 9.87915243516447 10.2218262298139 9.3712301068883 8.75329702905347 9.97855241995676 8.79916292029768 0.139804503208056 0.142108966519423 0.138294522629712 0.144799330880375 0.141080313075091 0.142601523882476 0.137966892444430 0.135000289523144 0.144290998167970 0.137957960306641 0.137933872149037 0.140352987051796 0.138086406388196 0.143009437483208 0.141840283267197 0.133854681995430 0.148701306908820 0.138904811884682 0.133854681995430 3 3 - 20532168 20532798 20532591.364 20531907 20533991 - gene protein_coding_gene FALSE TRUE AT3G55360.1 ATTSC13/CER10/ECR/TSC13 (ENOYL-COA REDUCTASE); 3-oxo-5-alpha-steroid 4-dehydrogenase/ fatty acid elongase/ trans-2-enoyl-CoA reductase (NADPH) Enoyl-CoA reductase is involved in all very long chain fatty acids (VLCFA) elongation reactions that are required for cuticular wax, storage lipid and sphingolipid metabolism. The protein is located in the ER, but in contrast to its yeast homolog TSC13 is not particularly enriched in the nuclear envelope-vacuole junction. Mutants in this gene show abnormal organ morphology and stem glossiness. Cells in all tissues are only about 1/3 of the size of wild type cells. The morphological changes are most likely to result from the reduction in the VLCFA content of sphingolipids. Mutants also show abnormalities in the endocytic membrane organization and transport. similar to 3-oxo-5-alpha-steroid 4-dehydrogenase family protein / steroid 5-alpha-reductase family protein [Arabidopsis thaliana] (TAIR:AT5G16010.1); similar to TSC13 protein [Nicotiana benthamiana] (GB:AAY17262.1); contains InterPro domain 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal; (InterPro:IPR001104) 0.0619098443449222 0.545869475853882 0.599350771747748 1 0.924930240578469 17.9583402341488 0.0619098443449222 0.131895226239293
AT2G26430_at 7.62030472359637 7.9858791800015 7.56445388311437 7.90967708522572 8.13451300681673 8.13042306643512 7.31946241898173 7.6658347454621 7.18242498018287 7.88472559002966 7.61641848691286 7.56940933986886 7.54109803663941 7.59182265910194 7.50299590809876 7.83957885532092 7.21667900644161 7.04577613317319 7.9394687114452 0.161425361926662 0.165473113496807 0.163973031086341 0.156509312558006 0.168630966301015 0.164125368839181 0.160050265727306 0.17366253545757 0.176712136870153 0.158326288662399 0.161988136381742 0.156509312558006 0.159297272168577 0.172016141834602 0.168089116064527 0.162177266443893 0.178164077031618 0.168689475363920 0.168702254441198 2 2 - 11250511 11251300 11250935.364 11250297 11253113 - gene protein_coding_gene FALSE TRUE AT2G26430.1|AT2G26430.2|AT2G26430.3 RCY1 (ARGININE-RICH CYCLIN 1); cyclin-dependent protein kinase regulator|RCY1 (ARGININE-RICH CYCLIN 1) Encodes an ania-6a type arginine-rich cyclin which confers tolerance to LiCl and NaCl when expressed in yeast. similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to cyclin L2 [Mus musculus] (GB:NP_997561.1); similar to Os01g0377500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043083.1); contains InterPro domain Cyclin, N-terminal; (InterPro:IPR006671); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670)|similar to cyclin family protein [Arabidopsis thaliana] (TAIR:AT5G45190.1); similar to Os01g0377500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043083.1); similar to putative cyclin [Triticum aestivum] (GB:CAE54271.1); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0542478513481717 0.545337654359824 0.599700495090978 1 0.924636748675347 15.3709912122445 0.0542478513481717 0.105664612568103
AT1G33780_at 9.38802189130793 9.72108063303823 9.48136126290095 9.60702365597886 10.176940074134 9.8243874116795 9.83612628241914 9.83624750488957 9.4486276941496 9.7293877027247 9.68023878667568 9.5912569513826 9.56211089260233 9.57890100615618 9.49757885606744 9.69060763098575 9.18685998024453 9.8625306520194 9.50145639896181 0.109230802067214 0.108897089822702 0.109420740998932 0.106182902765477 0.105023005860078 0.111117695809119 0.110677211368359 0.106794239106712 0.130764535622220 0.104787211693189 0.108803916043869 0.103990131156979 0.103990131156979 0.118513281337125 0.108318446723274 0.103990131156979 0.126613574529497 0.107587227287014 0.108318595993535 1 1 - 12244802 12245353 12245119.182 12244565 12246168 - gene protein_coding_gene FALSE TRUE AT1G33780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29240.2); similar to Protein of unknown function DUF179 [Medicago truncatula] (GB:ABE94310.1); contains InterPro domain Protein of unknown function DUF179; (InterPro:IPR003774) 0.049247842915493 0.545240945365406 0.599764102259636 1 0.924583407190183 19.3044408527746 0.049247842915493 0.08670238254278
AT1G27930_at 9.44349891956441 9.89653972902016 9.24110399131473 9.27480846422903 9.88173229779682 9.34519153930645 9.59139555908716 9.61735630642511 8.48372083670796 8.25114685740468 8.38555488254315 8.88479119558431 8.8602633904471 8.66639026875804 8.3238676395418 8.77920364265929 8.55704594518174 8.50142282543685 8.16736371220508 0.189777262071732 0.190181687132155 0.203568969018768 0.196326707241502 0.193640363915623 0.196476514216298 0.194099421807482 0.192685202042451 0.214840950522402 0.204553475591408 0.195656522174288 0.193643090176882 0.189777262071732 0.194918479166250 0.201045529582238 0.189777262071732 0.208296102435986 0.199217556026168 0.197465058347320 1 1 - 9731518 9732055 9731744.182 9731252 9732706 - gene protein_coding_gene FALSE TRUE AT1G27930.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G67330.1); similar to hypothetical protein MA4_111B14.64 [Musa acuminata] (GB:ABF72010.1); contains InterPro domain Protein of unknown function DUF579, plant; (InterPro:IPR006514) 0.0587925581503388 0.545004792316038 0.599919439414379 1 0.924453189837139 17.9967339887805 0.0587925581503388 0.121746374359740
AT4G25210_at 7.7149962381 7.8055567698223 7.56693463698151 7.55346905083499 7.95946124332596 7.56785064202348 7.61762700012398 7.6773006352975 7.29076351931695 7.46737952033427 7.67194613169516 7.89122412312835 7.52986225389554 7.47938319888507 7.5228243256658 7.78071234522667 7.47575807739793 7.1378797490568 7.52732815435249 0.139366569763147 0.134778091755709 0.137072020363574 0.134366425134199 0.135374405768862 0.147145573878932 0.140897775980703 0.140940905899068 0.147302191437759 0.144370402090717 0.135265448324438 0.136118307016232 0.140929717478901 0.144735799681225 0.140185637212331 0.133342296311860 0.137570433542450 0.136953783470792 0.139096954926012 4 4 + 12918992 12919507 12919323.818 12918338 12919752 + gene protein_coding_gene FALSE TRUE AT4G25210.1 transcription regulator similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G00130.1); similar to storekeeper protein [Solanum tuberosum] (GB:CAC39398.1); contains InterPro domain Protein of unknown function DUF573; (InterPro:IPR007592) 0.0453835550366122 0.544940189003743 0.599961938055873 1 0.924417575982553 15.1777441138738 0.0453835550366122 0.0703595099069558
AT2G27285_at 8.33097986307483 8.38547066100854 8.64277582821952 8.72804993430503 8.86010329152165 8.56813874137674 8.41364113796373 8.24348013961701 8.5318525076695 8.57359751864193 8.17047585501661 8.3008411343943 8.12880983109658 8.45083075199532 8.09708275901015 8.60620908723361 8.38307476925835 8.16218212768823 8.56568862639424 0.12564901778795 0.118670583153570 0.122116575294586 0.126671517966874 0.119491392684741 0.121465448495671 0.125022152918085 0.120495990018838 0.122146132786486 0.124698285123770 0.119735649631172 0.11892214692797 0.119448475974329 0.120584341781636 0.122796098710919 0.118891725838343 0.123304933023861 0.121904487221553 0.118670583153570 2 2 - 11683157 11684030 11683365.455 11683038 11685196 - gene protein_coding_gene FALSE TRUE AT2G27285.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G27280.1); similar to PREDICTED: similar to CG15747-PA [Tribolium castaneum] (GB:XP_972927.1); similar to Os04g0440000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052872.1) 0.0433830351663973 0.544288305403957 0.600390863616057 1 0.924058431327742 16.943822203151 0.0433830351663973 0.0610466078234016
AT4G25130_at 10.5814649960611 10.6310864500188 10.5402214664171 10.6640152707702 10.3368319414901 10.3891288879240 10.3885302258912 10.7397710015809 10.7295702779911 10.7004454413472 10.7146882351474 10.6744035135818 10.7417264938356 10.7580629556076 10.9997506394360 11.1189958113458 10.7275269994761 11.0419155478429 10.5378671007614 0.0906048411201303 0.08956502045397 0.0942102442117499 0.085432005013897 0.0898496211346147 0.0899631039123036 0.0912848993133141 0.0929515393026503 0.0914254605607677 0.0861402695018761 0.085432005013897 0.0891671795085713 0.0929315954425111 0.0913879955727342 0.0904027460768879 0.0875230280396554 0.0957470279220115 0.08900588930846 0.0872577255306518 4 4 - 12898812 12899750 12899366.545 12898601 12900074 - gene protein_coding_gene FALSE TRUE AT4G25130.1 peptide methionine sulfoxide reductase, putative Identical to Peptide methionine sulfoxide reductase (EC 1.8.4.11) (Protein- methionine-S-oxide reductase) (Peptide-methionine (S)-S-oxide reductase) (Peptide Met(O) reductase) (PMSR) [Arabidopsis Thaliana] (GB:P54150;GB:Q9SW13); similar to PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1), protein-methionine-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT5G61640.1); similar to PMSR protein [Brassica napus] (GB:CAA62760.1); contains InterPro domain Methionine sulfoxide reductase A; (InterPro:IPR002569) 0.0442545288816500 0.543481683441185 0.600921831475219 1 0.923614588038704 21.2854286373029 0.0442545288816500 0.0656450534783006
AT1G08920_at 6.2784909879633 6.92031025878993 5.75164460398884 5.79177195258793 7.05806892692827 6.36914013483714 5.91136360303954 6.00858680289106 4.07669128129104 4.36404389497806 3.92444774342944 4.53302972289071 4.99416492484926 4.67392223003564 3.67474605873537 4.2676694855363 4.87340141513937 4.18783523274902 4.19376622983744 0.242115137747426 0.241701348769846 0.244384007943422 0.239892129710049 0.239892129710049 0.249283239647579 0.242454503929374 0.239892129710049 0.242059341731873 0.240062378379654 0.248700718693901 0.243646685991528 0.243306539577572 0.239892129710049 0.243708365943962 0.239892129710049 0.242460167010114 0.243530613141049 0.249625206409346 1 1|0 +|/ 2869094 2870085 2869775.714 2867274 2870659 + gene protein_coding_gene FALSE TRUE AT1G08920.1|AT1G08920.2|AT1G08920.3 sugar transporter, putative|carbohydrate transporter/ sugar porter Identical to Sugar transporter ERD6-like 3 (Sugar transporter-like protein 2) (SUGTL2) [Arabidopsis Thaliana] (GB:Q94KE0;GB:O04037;GB:Q9SCW9); similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|Identical to Sugar transporter ERD6-like 3 (Sugar transporter-like protein 2) (SUGTL2) [Arabidopsis Thaliana] (GB:Q94KE0;GB:O04037;GB:Q9SCW9); similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828)|similar to ERD6 (EARLY RESPONSE TO DEHYDRATION 6), carbohydrate transporter/ sugar porter [Arabidopsis thaliana] (TAIR:AT1G08930.2); similar to putative sugar transporter [Solanum lycopersicum] (GB:CAC00697.2); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) 0.0713100621915234 0.540907173456122 0.602618213787853 1 0.922202051507768 10.5624984440647 0.0713100621915234 0.163956614515207
AT1G10020_at 3.60372563827853 3.6695490638533 3.61313486917354 3.94016658455585 3.87282033011142 3.91147739625647 4.68641276630685 4.91868360111922 6.2315343484013 4.57474086765963 7.62860125856152 5.91919689274165 6.72070435048366 6.7452773660018 5.66888209728703 5.62608428400635 4.97902860031769 5.31463047997292 5.99378733390511 0.240157323358954 0.217464264940074 0.224476029244669 0.223090270748381 0.220830229917887 0.226675490744368 0.216561872473779 0.218087036909300 0.219529392254898 0.219684237417243 0.218644359308693 0.216561872473779 0.221850823033947 0.228602249216206 0.220301474035711 0.216561872473779 0.221699835643746 0.221549294650809 0.221312522799595 1 1 - 3269945 3270516 3270278.182 3269606 3271989 - gene protein_coding_gene FALSE TRUE AT1G10020.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G29310.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93135.1); contains InterPro domain Protein of unknown function DUF1005; (InterPro:IPR010410) 0.0450434219088707 0.540065805023811 0.60317315839529 1 0.921741774270731 9.86465703928702 0.0450434219088707 0.0706619671026292
AT4G40050_at 4.45812768647116 5.01272871123261 4.57407922379431 4.55274598051013 6.4074464892654 5.49176851610913 5.25927142011636 5.38056320177364 5.59380518479819 5.43530175828148 5.50413656970331 4.95988132300497 5.34083245462935 5.35633200182022 4.86140055295112 4.97271737928164 4.51068106556337 5.56620000319164 5.53008885261409 0.191610092370468 0.189634774305421 0.197978599675493 0.199315300756133 0.199230840112044 0.200869169491384 0.201740005033118 0.189661417631665 0.201082797279158 0.190312064161818 0.191027494571240 0.195520147852337 0.197306222301381 0.201176277532577 0.189634774305421 0.189634774305421 0.201149647268568 0.197551986626749 0.198306352920477 4 4 - 18561210 18561990 18561508.636 18560854 18563832 - gene protein_coding_gene FALSE TRUE AT4G40050.1 signal transducer similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G03570.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD54686.1); similar to Os09g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063437.1); contains InterPro domain Regulator of G protein signalling; (InterPro:IPR000342) -0.0784359828042108 -0.539467851141851 0.603567718969669 1 0.921415063340798 10.4689687039922 -0.0784359828042108 0.186483183053385
AT4G17790_at 6.87604543969423 7.60217856817065 7.35323582326472 7.31631094279179 7.97710878758766 7.57876581639678 7.75607492586593 7.44371941129852 6.70922613009836 7.49457111368536 6.42073532691907 7.15009540026597 7.17953760596602 6.85804593419213 6.60638009703529 7.31551403197765 7.75581692953878 7.26467433005394 7.81945317476735 0.212715852299535 0.214350271629803 0.219555340011148 0.208757667456073 0.210456688244481 0.213076493034041 0.213896137715859 0.215051560644265 0.228395706897329 0.205465185878167 0.229553579942231 0.208283909671621 0.207131697636623 0.219946046711754 0.222258072352261 0.210029399104266 0.212070875732156 0.211981614192053 0.205465185878167 4 4 + 9892025 9892623 9892294.091 9891064 9892820 + gene protein_coding_gene FALSE TRUE AT4G17790.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G71940.1); similar to hypothetical protein 23.t00026 [Brassica oleracea] (GB:ABD65614.1); contains domain UNCHARACTERIZED (PTHR12677) -0.0676913798019203 -0.53899613463918 0.603879078816257 1 0.921157563364664 14.6928966793058 -0.0676913798019203 0.153314698468556
AT2G26900_at 10.1653051151815 10.1951354602431 10.2141907954662 10.1450889103525 10.5757835107885 10.0784118247280 10.6851320254522 10.4224714371230 10.0753578733941 10.1316387373292 10.3449367745800 10.2504135768573 10.2851832008754 10.0833043349103 10.4335256205929 10.1004170960924 10.2750001987837 10.2145814056891 9.88839397512818 0.100819131552560 0.0973264208712865 0.0984267082655766 0.101763539376237 0.0994879401443052 0.10274811099032 0.0999494054619908 0.104210676636901 0.102880796228522 0.102661998919967 0.0979333531795444 0.0996976528539615 0.100303237795927 0.103512415959199 0.09991408453015 0.0967272184418727 0.107091537151766 0.106691711020606 0.105085424424093 2 2|0 -|/ 11482397 11483472 11482777.125 11482030 11485022 - gene protein_coding_gene FALSE TRUE AT2G26900.1 bile acid:sodium symporter family protein similar to bile acid:sodium symporter family protein [Arabidopsis thaliana] (TAIR:AT1G78560.1); similar to putative anion:sodium symporter [Lycopersicon esculentum] (GB:AAU03362.1); contains InterPro domain Bile acid:sodium symporter; (InterPro:IPR002657); contains InterPro domain Bile acid transporter; (InterPro:IPR004710) 0.051490582465499 0.537669205562975 0.604755386957062 1 0.920434343350815 20.4502984539160 0.051490582465499 0.098205144232655
AT3G47470_at 13.9635795791586 13.9760502887033 14.0706377708982 14.0028305839834 13.9983859362372 14.0476586465066 14.1075162238400 14.2362160322451 14.7236385739792 14.5929124468307 14.7360970315970 14.8450977088040 14.7760464293173 14.6923900839774 14.5182635982519 14.6750503015266 14.6583435430478 14.877496245231 14.5014130821801 0.0514494930185586 0.0508484693716432 0.0525048606179857 0.0566032223659828 0.0541514845050293 0.0538502425068393 0.0534781270050218 0.0518396250007074 0.0540674935776083 0.0506767893924271 0.0554546456020341 0.051606358165886 0.0516553652717992 0.054822337752119 0.0588414310683149 0.0512898586014763 0.0501961102262812 0.050537171120257 0.0504230286095632 3 3|0 -|/ 17504609 17505556 17505027.4 17504357 17506018 - gene protein_coding_gene FALSE TRUE AT3G47470.1 LHCA4 (Photosystem I light harvesting complex gene 4); chlorophyll binding Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins. Identical to Chlorophyll a-b binding protein 4, chloroplast precursor (LHCI type III CAB-4) (LHCP) (CAB4) [Arabidopsis Thaliana] (GB:P27521); similar to LHCA2 (Photosystem I light harvesting complex gene 2), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT3G61470.1); similar to chlorophyll a/b binding protein [Solanum tuberosum] (GB:CAK24966.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) 0.0376988934043743 0.537627924866739 0.604782659716433 1 0.920411870577848 28.7145274587211 0.0376988934043743 0.0266665803707172
AT1G02120_at 9.31696944467813 9.21471384355236 9.2139490345271 8.97983590220666 9.64670494255926 9.14681964263908 9.10484417679103 8.82831032568533 9.3243185528225 9.34502066532339 9.3328156508781 9.50990358679533 9.34271925532909 9.51029862122271 8.99857805194064 9.34257052643326 9.31113192925159 9.3496121259217 9.4089361974411 0.113576562328244 0.114668820944353 0.115648099425783 0.112129150478745 0.112850585225219 0.122687421947735 0.118893274978057 0.116084544056128 0.124719907736498 0.118199840515366 0.114183940730170 0.113516982037717 0.111989748230128 0.116123946217976 0.114691036028406 0.110381141293877 0.118664477398482 0.120912491135255 0.117434684072742 1 1|0 +|/ 398484 399668 399193.1 395761 399897 + gene protein_coding_gene FALSE TRUE AT1G02120.1 VAD1 (VASCULAR ASSOCIATED DEATH1) similar to C2 domain-containing protein / GRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G59660.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL53388.1); contains InterPro domain GRAM; (InterPro:IPR004182) 0.0541982563744334 0.537601521799468 0.604800103673049 1 0.920397497868889 18.5298328425801 0.0541982563744334 0.108297029352393
AT1G53280_at 9.00871442265664 9.16311779908258 9.41571939496645 9.6472124354882 8.88305708587132 8.83693258374063 8.97172353815134 9.15107634603725 8.74827569323813 9.03920372496622 8.19598256263745 8.7736101646105 8.34130321022294 8.56379469747873 8.67770589084882 8.85288502019911 8.76864919509813 8.82231396224591 8.70544770803682 0.11335921719529 0.110851812387813 0.115010225423118 0.111288977595623 0.114917690333590 0.119285868185342 0.116015336757569 0.114463084345956 0.120447857373720 0.115971677170255 0.122936255447112 0.110851812387813 0.113769997513475 0.110851812387813 0.114908122630883 0.112909906195036 0.118381549431714 0.117115252207399 0.118032341570359 1 0|1 /|- 19868622 19869282 19868833.333 19868438 19871057 - gene protein_coding_gene FALSE TRUE AT1G53280.1 DJ-1 family protein similar to 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis protein, putative [Arabidopsis thaliana] (TAIR:AT3G14990.1); similar to ThiJ-like protein [Brassica rapa subsp. pekinensis] (GB:AAP96742.1); contains InterPro domain DJ-1; (InterPro:IPR006287); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818) -0.0421863861473315 -0.536994374045228 0.605201307434616 1 0.920067173376394 17.8624473490817 -0.0421863861473315 0.0578438494581735
AT3G50820_at 12.5502362978070 12.6306577502062 12.6373073446206 12.6978783496390 12.6021750145267 12.6657966740532 13.1062449963698 13.1955519051705 13.2594185372172 13.2497940055407 13.4532568945101 13.5286458124546 13.2756481934054 13.2852796092884 13.4738409489509 13.5176998313191 13.2677239408754 13.4722658051085 13.2843951488525 0.0550100115966079 0.0538221732117604 0.0562716014102143 0.0538466404667581 0.0549028199192676 0.0562242533680713 0.0561758505931302 0.0544692352377575 0.0613059654522273 0.0536288933461758 0.0536288933461758 0.0536288933461758 0.054700281782257 0.0554473804432863 0.055767136927654 0.0536288933461758 0.0578418716960847 0.0559155277618285 0.0537715563494508 3 3 - 18902126 18902606 18902323.273 18901857 18903407 - gene protein_coding_gene FALSE TRUE AT3G50820.1 PSBO-2/PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving Encodes a protein which is an extrinsic subunit of photosystem II and which has been proposed to play a central role in stabilization of the catalytic manganese cluster. In Arabidopsis thaliana the PsbO proteins are encoded by two genes: psbO1 and psbO2. PsbO2 is the minor isoform in the wild-type. Mutants defective in this gene have been shown to be affected in the dephosphorylation of the D1 protein of PSII. Identical to Oxygen-evolving enhancer protein 1-2, chloroplast precursor (OEE1) (33 kDa subunit of oxygen evolving system of photosystem II) (OEC 33 kDa subunit) (33 kDa thylakoid membrane protein) (PSBO2) [Arabidopsis Thaliana] (GB:Q9S841); similar to PSBO-1 (OXYGEN-EVOLVING ENHANCER 33) [Arabidopsis thaliana] (TAIR:AT5G66570.1); similar to photosystem II protein [Brassica oleracea] (GB:AAT65501.1); contains InterPro domain Photosystem II manganese-stabilizing protein PsbO; (InterPro:IPR002628) -0.0375620796964546 -0.536912363514551 0.605255510917439 1 0.920022581362253 26.0976465548954 -0.0375620796964546 0.0257612640218190
AT4G10610_at 8.57648441938174 8.79798440982682 8.49533291919682 8.53175596334241 8.9670825767853 8.46786655266228 8.52238171115199 8.65249393723458 8.3030958391821 8.62312148484098 8.90653708632376 8.81758020892668 8.58055053834335 8.58374397149178 8.51842289882202 8.75805017502055 8.35536794801612 8.23190600257324 8.4833690679594 0.125331057746621 0.120489619786117 0.129173127327766 0.123351258301022 0.127096399719067 0.129776603874062 0.126785522675907 0.124967322871651 0.131402765222932 0.124594850564601 0.121023712904060 0.121988722204558 0.121417663931970 0.133452174448535 0.12231226343984 0.121063585410515 0.131343955378879 0.126656619615248 0.124543928987729 4 4|0 +|/ 6558087 6559112 6558663.1 6557173 6559591 + gene protein_coding_gene FALSE TRUE AT4G10610.1|AT4G10610.2 RBP37 (RNA-BINDING PROTEIN 37); RNA binding RNA-binding protein, putative. Member of a family of proteins having an PABC binding domain (PAM motif). similar to CID11, RNA binding / protein binding [Arabidopsis thaliana] (TAIR:AT1G32790.1); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504)|similar to CID11, RNA binding [Arabidopsis thaliana] (TAIR:AT1G32790.2); similar to RNA-binding protein (GB:AAA86641.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ataxin-2, C-terminal; (InterPro:IPR009818); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0511655533133957 0.536574579522988 0.605478790792281 1 0.919838983036678 17.158363803373 0.0511655533133957 0.0973630075432061
AT2G44820_at 5.92924748978606 6.2895138363277 5.73158652756079 5.83947109633347 5.8820886044168 6.13652598255079 5.63425627851503 6.11214419745032 6.35683932664816 5.66300453799011 6.01066538537573 6.0741970412413 6.16395300205675 5.65067358751771 5.28090964240431 5.9198230052532 5.65380106853853 5.41654717883785 5.34637216794997 0.248948127316401 0.238042646786121 0.244348100715971 0.237992981103042 0.235412054186658 0.242392391516088 0.244182373352295 0.231836099558539 0.253030031611699 0.237973691427514 0.229913757854054 0.229913757854054 0.242225089199562 0.246152534942932 0.23597697443425 0.233663980962490 0.242686201777977 0.23393369923438 0.234986859964894 2 2|0 +|/ 18491802 18492412 18492225.625 18491426 18492891 + gene protein_coding_gene FALSE TRUE AT2G44820.1|AT2G44820.2 similar to Os01g0224500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042454.1); similar to unknown [Hyacinthus orientalis] (GB:AAT08666.1) -0.0556449182152776 -0.536043164451012 0.605830152112213 1 0.919550356315318 11.7243842098339 -0.0556449182152776 0.114077834305842
AT4G13030_at 5.74391544926848 5.71280860853683 5.67424086018738 5.35855965676987 5.85556479971165 6.17643208924144 5.4228423015679 4.79954689247509 3.73970565509293 4.18807748731605 3.57568985190036 3.45891284371116 4.04146724104848 3.31880809744778 3.26621344645499 3.41518387996949 4.32236496937048 3.82477832213563 4.43721896624263 0.374584074227189 0.388867326815732 0.366283259389400 0.366283259389400 0.375931097366329 0.379859199860435 0.366283259389400 0.383698281354887 0.380632358260210 0.380534972000288 0.378843315986262 0.366283259389400 0.381036911217330 0.367774312478288 0.366283259389400 0.366283259389400 0.391442723028544 0.387829451646882 0.380573437879955 4 4 + 7608767 7609622 7609304.5 7607264 7609840 + gene protein_coding_gene FALSE TRUE AT4G13030.1|AT4G13030.2 similar to hypothetical protein S250_18C08.34 [Sorghum bicolor] (GB:AAS82599.1); similar to Os05g0274300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055071.1); contains domain ATP_GTP_A2 (PS50101); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.0611594997651155 -0.535939525261485 0.605898688954869 1 0.919494097887939 9.4802861827475 -0.0611594997651155 0.133159378244024
AT4G16440_at 5.51923495083975 6.19162041817402 5.95211592495326 5.91583224032325 6.18950567880815 6.22764682657567 5.91699311695673 5.74822848531906 4.48367218238259 5.27605847235059 5.29847479030947 4.78697790884393 5.01247833391221 4.88399910565856 4.64125774733761 5.0952317779812 5.26988851885078 4.52262154620902 5.394364633384 0.205762550815304 0.197655071804289 0.199314034688018 0.202230254834115 0.197880798320849 0.209453222389326 0.202036678701571 0.205082971951560 0.202222757908191 0.200562656393444 0.201736443179473 0.201312131394426 0.202986560422028 0.202363046889958 0.200310132584857 0.197655071804289 0.203192379578914 0.204149886858457 0.202106067536792 4 0|4 /|- 9269291 9270022 9269626.778 9269286 9271532 - gene protein_coding_gene FALSE TRUE AT4G16440.1 iron hydrogenase family protein similar to Narf-like protein [Medicago truncatula] (GB:CAD10687.1); contains InterPro domain Iron hydrogenase, small subunit; (InterPro:IPR003149); contains InterPro domain Hydrogenase large subunit, C-terminal; (InterPro:IPR004108); contains InterPro domain Iron hydrogenase; (InterPro:IPR009016) 0.0573785224707418 0.535710771878441 0.606049978691032 1 0.919369959558263 10.9527628613322 0.0573785224707418 0.120314065582032
AT3G62010_at 9.69055577662337 9.83413641021824 9.67439629984692 9.77012871086535 9.97593626237485 9.74385278570079 9.64845642263798 9.54171018336218 9.75033714109816 9.59007667367717 9.57712354607151 9.52506715929302 9.58697364807497 9.65239186428547 9.35893154309437 9.81848237912746 9.670282283983 9.6608617010943 9.56847145525664 0.0916520653368342 0.0808204143475538 0.088668283323039 0.0886664016471483 0.0813043022198075 0.0894936308245007 0.0823158726978708 0.0831924022115611 0.095178112864987 0.0810420578906263 0.0862351139907617 0.0828763518014599 0.0847413913666188 0.0863481212240972 0.0854136872877551 0.0834265702473307 0.0885605559136319 0.0882045926303524 0.087581425480739 3 3|0 +|/ 22981274 22981991 22981541.889 22975652 22982359 + gene protein_coding_gene FALSE TRUE AT3G62010.1 metal ion binding / oxidoreductase similar to Os03g0586700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050571.1); similar to hypothetical protein CC1G_07102 [Coprinopsis cinerea okayama7#130] (GB:EAU85408.1); contains InterPro domain [2Fe-2S]-binding; (InterPro:IPR002888) 0.041166496051944 0.534417321964272 0.606905799925388 1 0.918668966033175 19.3561762842730 0.041166496051944 0.0533495820378336
AT3G61620_at 5.33857198266204 5.5682040741221 5.21185133066434 5.29318599052943 5.25016192993586 5.22766113580768 4.7896853534050 5.18760968803564 4.17002416991499 4.69736989306297 4.205477631847 4.77050778528714 5.03532711588151 4.27098195549419 4.53312826575615 4.59961386766741 4.62672810955688 4.41945179593896 4.59923843679303 0.202359423311352 0.205125867638438 0.199147015710062 0.196620076657073 0.199733517567683 0.200115065687827 0.198118469472084 0.203433133760222 0.202934619515874 0.196620076657073 0.215422225586595 0.199632108844044 0.20391686921812 0.207103887602642 0.205562805330813 0.197780955088828 0.196620076657073 0.202799793797859 0.200897038935084 3 3|0 -|/ 22812357 22813147 22812783.333 22812196 22814083 - gene protein_coding_gene FALSE TRUE AT3G61620.1 RRP41 (Ribosomal RNA Processing 41); 3'-5'-exoribonuclease/ RNA binding exonuclease RRP41 (RRP41) similar to 3' exoribonuclease family domain 1-containing protein [Arabidopsis thaliana] (TAIR:AT4G27490.1); similar to putative exosome component 4 [Oryza sativa (japonica cultivar-group)] (GB:BAD22331.1); contains InterPro domain Exoribonuclease; (InterPro:IPR001247) 0.0467359440915613 0.532943810492371 0.60788154066999 1 0.917872307529835 9.75663121857142 0.0467359440915613 0.0808364038947559
AT4G24680_at 8.07369924598706 8.06973757436029 7.96805989766242 8.2589000108093 8.35088822545183 8.21634406962864 7.94257812154998 8.02010617960466 8.38100707045418 8.14164974900104 8.10425249553139 8.18865494797244 7.832756078056 7.7999304626009 8.04005645658992 7.89408711833675 8.15534957808105 7.86170646926371 8.19712510857475 0.153994887461528 0.150054951634027 0.152447305363862 0.150352609636569 0.147449669704363 0.157251776789505 0.148830232267592 0.149081405457421 0.151050788727182 0.147078136044048 0.150138276041434 0.149073856082171 0.146105456962957 0.167424856361458 0.150740751629533 0.153490121364329 0.151906590413911 0.152582831397838 0.149614015936436 4 4 + 12739151 12739715 12739437.091 12733435 12740061 + gene protein_coding_gene FALSE TRUE AT4G24680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA98985.2) -0.0416551690133762 -0.532084956191811 0.608450646040818 1 0.917408909365536 16.2248024207054 -0.0416551690133762 0.0570598770152124
AT1G26920_at 9.63066935237464 10.0260569916483 9.36701373944962 9.50761262047181 10.0466818312670 10.0138387689666 10.4872404021581 10.4886472461335 10.1648450472172 9.92933764416582 10.7884570553357 10.7980204157347 10.7687669364427 10.6381148665721 10.3665364284337 10.5122362390142 10.2859736096782 10.5359638890568 10.1239319884052 0.0962232884853826 0.0954073492235325 0.100363557898690 0.0964495136297391 0.0940382827800998 0.0987133596389194 0.0963769107394671 0.100090279783864 0.106398692656404 0.0962256187824228 0.0945649073982177 0.0949107492752417 0.0988848865430951 0.0996879836077763 0.096428893550591 0.0948235281956398 0.0974645078679903 0.100681377706277 0.09470227307427 1 1 + 9329652 9330061 9329848.091 9329499 9330385 + gene protein_coding_gene FALSE TRUE AT1G26920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69760.1); similar to hypothetical protein [Ricinus communis] (GB:CAH56540.1) 0.0448435143654633 0.531998063051445 0.608508240012244 1 0.917362064577025 20.2757019057068 0.0448435143654633 0.0728434909144251
AT1G31420_at 9.31517503301767 9.248224204344 9.4148828407471 9.294671760452 9.74025929804758 9.42098280425557 10.0003260160801 9.970731170387 9.98842919557319 9.84141521297624 10.4157908193047 9.95500406195475 10.2040311441581 10.0506261871964 10.1462896947961 9.80298986563368 9.5999492392902 9.97400991393503 9.98148128821044 0.0871624976133518 0.0875688332757728 0.0896637178992079 0.0856974428413634 0.085971465899203 0.0910145748750347 0.084295450853743 0.08507351090946 0.0880668862173616 0.086861816401646 0.0868704700343581 0.085584115762615 0.0836550970539246 0.089196143824412 0.084920511374873 0.0860519953734024 0.0853784164432853 0.0842668199110604 0.0898376906160573 1 1|0 +|/ 11252750 11253457 11253178.6 11249599 11253860 + gene protein_coding_gene FALSE TRUE AT1G31420.1 leucine-rich repeat transmembrane protein kinase, putative similar to leucine-rich repeat transmembrane protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G35620.1); similar to Os03g0266800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049659.1); similar to Os12g0638100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067376.1); similar to SERK1 protein [Zea mays] (GB:CAC37638.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.0422185649423079 -0.531286867384158 0.608979738617533 1 0.916978920935654 19.5285041066015 -0.0422185649423079 0.0603825520240862
AT4G14300_at 8.85860997128844 9.11119608777965 8.5685087796664 8.788788662553 8.95384295977683 8.84395928785819 9.09084201639266 9.55815619453936 8.97833348972363 8.75350523730655 9.14665646392909 9.21073739161483 9.32307226168226 9.22199305760693 9.10271511707054 8.87039762660314 8.670650638038 9.03815054681717 8.69937618924347 0.100855043533103 0.0970393669575598 0.101417591304445 0.0978069098573897 0.101650102916331 0.100893451526418 0.0995348425155988 0.0950703663474356 0.102010482856045 0.0974449749201231 0.0988649158882124 0.0950331086421233 0.0969445286943331 0.100253689920757 0.101089832453248 0.0964680776678417 0.106304806293638 0.104507740691887 0.103986398451350 4 4 + 8232259 8232755 8232472.455 8231013 8232987 + gene protein_coding_gene FALSE TRUE AT4G14300.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative similar to heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative [Arabidopsis thaliana] (TAIR:AT2G33410.1); similar to Os10g0470900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064824.1); similar to RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain), putative [Medicago truncatula] (GB:ABE88237.1); similar to Os11g0637700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068335.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0516422396036971 -0.530759103108372 0.609329753143057 1 0.916694905980804 17.9134637999875 -0.0516422396036971 0.101319025574452
AT1G80810_at 5.10459624852084 4.67177144346281 5.1554386789249 4.27920898858314 5.09471384874944 4.7042959090813 4.70641607602242 4.44303899650384 5.51470841779449 5.56397518013615 5.57236218855359 5.70219259008084 5.43457915134229 5.88912375131187 5.05271400297813 5.69247158487074 5.54786533912153 4.7783611880341 5.06318791795592 0.169113444641189 0.168802198093853 0.169231133594682 0.171941212095508 0.17814430650467 0.187562550391605 0.173449570189124 0.172727639501574 0.185051540492753 0.176602039181303 0.16934705459739 0.172782313595135 0.17028137992812 0.167935501504145 0.167517281873329 0.178324936007141 0.182045448220083 0.175118381494170 0.166829236032274 1 0|1 /|+ 30373137 30373713 30373366 30370179 30373790 + gene protein_coding_gene FALSE TRUE AT1G80810.1|AT1G80810.2 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15940.1); similar to Tudor [Medicago truncatula] (GB:ABE86625.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0775217755575003 0.530379597930053 0.609581507509093 1 0.916490838689675 10.1896013053138 0.0775217755575003 0.187739142710748
AT3G63330_at 4.91796210141738 4.46416296836175 4.75347271959416 4.38723727007910 5.40033521197446 4.70489151633307 4.95005078841449 4.64070851683055 4.73408559233832 5.2606870374661 4.94933881111778 4.91435496410355 5.1511949054131 4.8361235235993 4.77152352352563 4.83232223577097 4.89882133002063 4.99039160765756 5.38662469357895 0.184545360426655 0.185002222634593 0.185803063898405 0.186664215680253 0.191545121883440 0.179705125813999 0.181512244465749 0.180493024055884 0.189881762347859 0.176852608606793 0.182010935490026 0.188472214783855 0.180100118584822 0.186503811053023 0.183368352306344 0.180249768215359 0.177914811253248 0.182802852735023 0.179551453748461 3 3|0 -|/ 23403185 23404052 23403830.286 23402603 23405738 - gene protein_coding_gene FALSE TRUE AT3G63330.1|AT3G63330.2 protein kinase family protein|kinase similar to AFC2 (ARABIDOPSIS FUS3-COMPLEMENTING GENE 1), kinase [Arabidopsis thaliana] (TAIR:AT4G24740.1); similar to Serine/threonine-protein kinase Doa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94449.2); similar to Os11g0586100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068167.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719)|similar to SnRK1.3 (SNF1-RELATED PROTEIN KINASE 1.3), kinase [Arabidopsis thaliana] (TAIR:AT5G39440.1); similar to Serine/threonine-protein kinase Doa, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94449.2); similar to Os11g0586100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068167.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.0704302463687851 -0.529522670485591 0.61015017382931 1 0.916030552116244 9.79992328851505 -0.0704302463687851 0.165933763086105
AT3G19910_at 8.97386365289863 9.10387231906591 8.94311138955458 8.97090460071976 9.41831837170408 9.21847651387114 8.30729533942098 8.5885157373936 8.85346111253086 8.636852548637 8.39205449094588 8.35910062500212 8.33956027232126 8.63422578786893 8.02681771010594 8.59569484686026 8.15796761323594 8.26472121595881 8.474961821128 0.147471643990454 0.146679347063300 0.149803806108047 0.143388789513034 0.143167722655494 0.147362772268280 0.145985545074389 0.143444782479124 0.151557268785499 0.145735968410512 0.143517958938620 0.144458306183881 0.144734365881386 0.13876647820203 0.146610324681214 0.13876647820203 0.157303999350345 0.143688810868638 0.146291242794652 3 3|0 +|/ 6927196 6929304 6928220.375 6926314 6929573 + gene protein_coding_gene FALSE TRUE AT3G19910.1 zinc finger (C3HC4-type RING finger) family protein similar to BB (BIG BROTHER), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT3G63530.2); similar to Os09g0535100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063778.1); similar to hypothetical protein [Cicer arietinum] (GB:CAC10211.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0427459748115271 0.52906589128178 0.610453411668618 1 0.915785482765252 17.4412245644383 0.0427459748115271 0.0639825935964872
AT3G59410_at 6.55324569057443 7.06447215699815 6.85088331501505 6.96445974061378 7.6235149802111 6.86399291186085 7.05966551311815 6.68268201099909 6.77770132420417 7.17084352514361 6.84571506689102 6.70399421731804 6.3985581332785 7.0785618928964 6.77154996622978 6.72294981164792 6.31956895124648 6.87886841580321 7.33760726877264 0.198799282814028 0.194499767969279 0.200824895636126 0.198026404791294 0.193581955024055 0.194714300710976 0.199726870947547 0.193255070548809 0.197726879153104 0.194776625625875 0.193821908319964 0.193061973922795 0.204620180711647 0.197615682951488 0.193628390221918 0.188289361698635 0.227741744912967 0.193814102858595 0.193882190887907 3 3|0 +|/ 21968856 21970104 21969488 21961546 21970243 + gene protein_coding_gene FALSE TRUE AT3G59410.1 protein kinase family protein Identical to Probable serine/threonine-protein kinase GCN2 (EC 2.7.11.1) (GCN2) [Arabidopsis Thaliana] (GB:Q9LX30;GB:Q8H2D3); similar to histidyl-tRNA synthetase, putative / histidine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT3G02760.1); similar to H0425E08.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67537.1); similar to OJ990528_30.5 [Oryza sativa (japonica cultivar-group)] (GB:CAE02047.2); contains InterPro domain Anticodon-binding; (InterPro:IPR004154); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain RWD; (InterPro:IPR006575); contains InterPro domain Tyrosine protein kinase, active site; (InterPro:IPR008266) -0.0723584192284084 -0.528514667584091 0.610819453194074 1 0.915490004724965 13.8630419630675 -0.0723584192284084 0.172468958804728
AT4G31540_at 6.02591531181236 6.54195829897962 6.34056865968578 6.3620680585907 6.53129235531986 6.82969885235684 5.9156751031233 6.3593405114706 6.13283356712193 6.07879908537824 6.34123794605005 5.44462528387672 6.15567757569092 6.16910386891726 5.36071279118463 6.11456859833263 5.92505671674965 5.88377143652736 6.12315361493306 0.224053840056671 0.215731463297120 0.225068481515385 0.215253723321778 0.223177247833464 0.224938624036112 0.212048518165084 0.213656885748293 0.227820038042429 0.212814191492662 0.219993066271254 0.213783549532456 0.221731175620745 0.234240037171843 0.220170282441747 0.212597183712784 0.218534379684023 0.234403592564653 0.214039886919785 4 4 - 15284745 15285297 15284992.545 15284395 15287312 - gene protein_coding_gene FALSE TRUE AT4G31540.1 ATEXO70G1 (exocyst subunit EXO70 family protein G1); protein binding A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. similar to ATEXO70G2 (exocyst subunit EXO70 family protein G2), protein binding [Arabidopsis thaliana] (TAIR:AT1G51640.1); similar to Os06g0698600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058467.1); similar to putative Exo70 exocyst complex subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD54663.1); contains InterPro domain Exo70 exocyst complex subunit; (InterPro:IPR004140) 0.0589667649151182 0.528255606340016 0.610991523390371 1 0.915351236601997 12.3812844937393 0.0589667649151182 0.128649356285938
AT2G02130_at 9.21503605327529 9.25086895448917 8.45037434406143 8.376706526191 8.33722164652357 8.49536261165843 9.28571471905112 9.41385515881713 9.04886197971818 8.8071898277085 9.71226146962575 10.5425760748253 9.03207370424749 9.49664027743505 10.8051462898093 9.73928368889538 9.05060981456806 9.61836537601149 8.53356086901449 0.117813800632769 0.118876241687596 0.119112408236263 0.123136787982452 0.121448305003671 0.126122902611918 0.117022491074749 0.11906305962752 0.114235003472539 0.116203756685673 0.114609969937956 0.121544147108697 0.112257738141652 0.115546565836847 0.119791459248048 0.115959922049973 0.121594133254837 0.113812318051764 0.11773712165411 2 2|0 +|/ 540071 540381 540270.9 539998 540633 + gene protein_coding_gene FALSE TRUE AT2G02130.1 LCR68/PDF2.3 (Low-molecular-weight cysteine-rich 68); protease inhibitor Identical to Probable low-molecular-weight cysteine-rich protein LCR68 precursor (LCR68) [Arabidopsis Thaliana] (GB:Q9ZUL7); similar to LCR69/PDF2.2 (Low-molecular-weight cysteine-rich 69), protease inhibitor [Arabidopsis thaliana] (TAIR:AT2G02100.1); similar to protease inhibitor II (GB:AAA91049.1); contains InterPro domain Gamma thionin; (InterPro:IPR008176); contains InterPro domain Gamma Purothionin; (InterPro:IPR008177); contains InterPro domain Knottin; (InterPro:IPR003614) 0.0383147944069693 0.528048288996125 0.611129243318486 1 0.915240231148694 18.1262210746289 0.0383147944069693 0.0379694242257924
AT1G77210_at 7.69035406230272 7.94688867243215 7.54773759233941 7.5517095307824 8.47456702520086 7.65246652341942 6.5464897375012 6.17080782546199 7.00294684034169 7.1341890282645 5.30847927813569 6.30765435134089 7.2190593129423 6.31467032406333 5.15727899657165 6.23322754049537 6.6411617947185 6.05213542338374 6.89415358679568 0.254228791662862 0.246417699784766 0.254316749574628 0.246417699784766 0.248289864617505 0.246417699784766 0.259250854223567 0.261214226045062 0.268560594045238 0.246417699784766 0.254820615516852 0.247509493338053 0.251978531951284 0.279837607373213 0.279128057502753 0.251386270961777 0.268742935720987 0.260564940168568 0.257032976900647 1 1 - 29014022 29014556 29014229.364 29013833 29015984 - gene protein_coding_gene FALSE TRUE AT1G77210.1 sugar transporter, putative Identical to Sugar transport protein 14 (Hexose transporter 14) (STP14) [Arabidopsis Thaliana] (GB:Q8GW61;GB:O80655); similar to sugar transporter, putative [Arabidopsis thaliana] (TAIR:AT4G02050.1); similar to Sugar transporter superfamily [Medicago truncatula] (GB:ABE81274.1); similar to PaMst-1 [Picea abies] (GB:CAB06079.1); similar to monosaccharide transporter [Glycine max] (GB:CAD91336.1); contains InterPro domain Sugar transporter; (InterPro:IPR003663); contains InterPro domain Sugar transporter superfamily; (InterPro:IPR005829); contains InterPro domain Major facilitator superfamily; (InterPro:IPR007114); contains InterPro domain General substrate transporter; (InterPro:IPR005828) -0.0691181736249213 -0.527495225320697 0.611496720776047 1 0.914944298795796 14.0299467192669 -0.0691181736249213 0.162598824439904
AT1G79830_at 8.46578242059868 8.67465161837703 8.46646268101481 8.68100350182017 8.90028615326339 8.4026050014728 8.66705330891103 8.54435016201638 8.38978861678078 8.4167823514069 8.66857060305747 8.7859134175761 8.3988891411548 8.65351344674187 8.59053675552022 8.80711396917632 8.5493049923486 8.48862417410483 8.81072311478361 0.116582190254064 0.115099411647843 0.122329171800893 0.116391788867672 0.114135241164545 0.118919083607656 0.116198034396855 0.115761882595946 0.127545651416371 0.118166985076649 0.114869738126108 0.118012102203511 0.115560818477219 0.117519632767809 0.118872668144689 0.117751459612992 0.123486809675360 0.117946779256754 0.121969842367553 1 1|0 -|/ 30033271 30034447 30033825.4 30032753 30038687 - gene protein_coding_gene FALSE TRUE AT1G79830.1 similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to Os05g0559900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056303.1); similar to Tropomyosin; tRNA-binding arm; t-snare [Medicago truncatula] (GB:ABD32289.1); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978); contains InterPro domain t-snare; (InterPro:IPR010989) 0.0516701208599732 0.527240140155299 0.6116662486262 1 0.91480790563706 17.1787275259928 0.0516701208599732 0.102730457536787
AT1G17890_at 6.84460492873732 6.87973272899321 6.67003533763773 6.69506654982307 5.49655184357975 5.78807598047827 6.06277163264841 6.05920193144992 6.06589785039124 5.00832335800752 5.74760038896746 6.30983120866234 5.49675636250551 5.89779810897929 6.3173790116158 5.20859713947083 5.43705673853649 5.65974162771845 5.06513978178578 0.202679751700508 0.201969573374610 0.199078296613997 0.199200108668751 0.211783059014644 0.212732041339355 0.206667816511037 0.199269289820317 0.212574476991113 0.209451282515618 0.201605244911945 0.199882756453112 0.204893307732518 0.203890611721673 0.200839288593018 0.195763615664592 0.205810880486255 0.200761563713260 0.209954478274529 1 1 - 6154505 6155006 6154779.091 6154261 6155745 - gene protein_coding_gene FALSE TRUE AT1G17890.1|AT1G17890.2|AT1G17890.3 GER2; catalytic Identical to Putative GDP-L-fucose synthase 2 (EC 1.1.1.271) (GDP-4-keto-6-deoxy-D- mannose-3, 5-epimerase-4-reductase 2) (AtGER2) (GER2) [Arabidopsis Thaliana] (GB:Q9LMU0;GB:Q3EDA2;GB:Q3EDA3); similar to ATFX/GER1 (GDP-4-KETO-6-DEOXYMANNOSE-3,5-EPIMERASE-4-REDUCTASE 1), GDP-L-fucose synthase [Arabidopsis thaliana] (TAIR:AT1G73250.1); similar to Os06g0652400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058235.1); similar to GDP-fucose synthetase [Desulfotomaculum reducens MI-1] (GB:ZP_01149460.1); similar to GDP-fucose synthetase [Methanosarcina barkeri str. fusaro] (GB:YP_303606.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.0402063495006636 0.527159616396162 0.611719769293242 1 0.914764862626597 11.8815711516861 0.0402063495006636 0.0510025855808186
AT1G09620_at 8.30605713940079 8.24748084452081 7.95466715626943 7.99457013337431 8.06653168753457 7.9445265745045 8.20010110063713 8.08513991560866 7.96782889473661 7.62824287912723 7.76012599286467 8.24232863488902 7.80121619732189 7.93680563072168 8.01406254096786 8.0797852955107 7.90400487113836 7.95540141661395 7.85480267050294 0.138343377821021 0.138783028425716 0.134641710368516 0.144314562234301 0.133433575436105 0.148021605327056 0.138870509972629 0.136762354742729 0.136080697791560 0.146882249089251 0.131150283524047 0.136959742570985 0.138885516809064 0.132140928521624 0.132716821259099 0.131536888440456 0.144973175456488 0.143306494918995 0.135412228291216 1 1 - 3113249 3113699 3113497.636 3112780 3116700 - gene protein_coding_gene FALSE TRUE AT1G09620.1 ATP binding / aminoacyl-tRNA ligase similar to EMB2369 (EMBRYO DEFECTIVE 2369), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT4G04350.1); similar to Leucyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL51574.1); similar to PREDICTED: similar to Leucyl-tRNA synthetase, cytoplasmic (Leucine--tRNA ligase) (LeuRS) [Canis familiaris] (GB:XP_535229.1); similar to PREDICTED: similar to Leucyl-tRNA synthetase, cytoplasmic (Leucine--tRNA ligase) (LeuRS) [Gallus gallus] (GB:XP_414663.2); contains InterPro domain Aminoacyl-tRNA synthetase, class I; (InterPro:IPR001412); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Leucyl-tRNA synthetase archae/euk cytosolic, class Ia; (InterPro:IPR004493); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080) -0.0374313438699436 -0.526695333995947 0.61202840575947 1 0.914516805533432 15.9892215542942 -0.0374313438699436 0.0314963061277376
AT4G33470_at 9.03854400047983 9.18192400065225 9.10778128753693 9.13729566961554 9.59625386605106 9.17988905746572 9.6648895068368 9.30415395070264 9.41632244045928 9.2198447794649 9.57684830823327 9.4519590164186 9.25387196614949 9.21597856781959 9.07962362168747 9.65683302943628 9.519263125813 9.33128149230442 9.09230026726866 0.143818472618697 0.138029496750892 0.146972380822734 0.141658282483661 0.141994614083128 0.149471970930423 0.144764862950080 0.138463685788290 0.145463465669064 0.150451382601652 0.13973513243607 0.139684732610935 0.145470911181907 0.151657912926721 0.149585204780603 0.138029496750892 0.149298111076766 0.154982134011802 0.152325865639643 4 4 - 16102837 16103640 16103187.818 16102598 16105496 - gene protein_coding_gene FALSE TRUE AT4G33470.1 HDA14 (histone deacetylase 14); histone deacetylase similar to HDA15 (histone deacetylase 15), histone deacetylase [Arabidopsis thaliana] (TAIR:AT3G18520.2); similar to Os12g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066322.1); similar to Histone deacetylase complex, catalytic component RPD3 (ISS) [Ostreococcus tauri] (GB:CAL55176.1); contains InterPro domain Histone deacetylase superfamily; (InterPro:IPR000286) 0.0504060003756253 0.525167298656575 0.613044760016984 1 0.913701844499632 18.5906063607745 0.0504060003756253 0.098643999841239
AT4G25030_at 9.01821264570714 9.11263351024861 8.87488268639215 9.0383802130597 8.39448845986899 8.37718574060134 8.21175575651673 8.39001469788947 8.19660052754414 8.03470220384716 8.27884030988952 8.6327542775394 7.6879423764744 7.86308869003931 8.23997396196907 7.46249739030609 7.5022815311993 8.61937403875347 7.60594963992383 0.178351217784541 0.170838516558114 0.178969303083467 0.173118069469591 0.174142527436565 0.183512742122044 0.168859537231981 0.174139536590965 0.184652883079859 0.183059653481138 0.170223591331348 0.173562953653778 0.184492989681124 0.176624137238205 0.184307306213911 0.179856346060083 0.186871421832031 0.189568129302909 0.184855379641259 4 4 + 12866086 12866598 12866290.273 12864624 12866837 + gene protein_coding_gene FALSE TRUE AT4G25030.1|AT4G25030.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45410.3); similar to Os07g0159500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058932.1); similar to Os10g0580900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065517.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67910.1) 0.0390867019865002 0.524942674956641 0.61319424033027 1 0.913582229990437 16.6679916450154 0.0390867019865002 0.0450349203149853
AT4G18593_at 7.95487003529608 7.82367812969361 8.36125643573452 8.25135398594374 8.62748791814813 8.20495260707255 7.9441583374239 7.94854947157934 7.32057686189217 7.85796144586794 7.1798646704115 7.28130468589195 7.84001169666271 7.42484676402642 7.0813907600194 7.80752389998316 7.69647886775484 6.99981053469588 8.12020544643218 0.187521895791588 0.189482827370675 0.192766413771430 0.187050350193669 0.189800008222354 0.199719812967289 0.187110870978232 0.196293391186178 0.210229788652872 0.192090146950658 0.193969266168383 0.187027631929342 0.194678490151856 0.19320175643201 0.193921419016411 0.189735189247519 0.202359994917857 0.212791915191013 0.193191625661745 4 4 + 10238207 10238665 10238460.636 10237583 10238847 + gene protein_coding_gene FALSE TRUE AT4G18593.1 dual specificity protein phosphatase-related similar to Os12g0133700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066090.1); similar to Os11g0136800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065692.1); similar to Dual specificity protein phosphatase [Medicago truncatula] (GB:ABD33027.1); contains domain DUAL SPECIFICITY PROTEIN PHOSPHATASE (PTHR10159); contains domain HYVH1 DUAL SPECIFICITY PHOSPHATASE (PTHR10159:SF17) 0.0455524050465717 0.524506410092409 0.613484616034787 1 0.913350050641425 15.7296143166089 0.0455524050465717 0.0788957020326309
AT1G12820_at 9.05517131221497 9.30971731963449 9.1623464586218 9.09530337734597 9.59040852683079 9.39959077105768 9.61637705165694 9.4912047845159 9.09446883304224 9.27187920524565 9.12815117117572 9.29699819181491 9.36053365842682 9.1377949212445 8.77852682274211 9.5029066101064 9.40193490003121 9.04079106722953 9.33281916498963 0.119289130517747 0.110445971151677 0.119068446523529 0.114433424943257 0.110804793972189 0.120032524811451 0.114629020147122 0.114267508030475 0.122460226369866 0.112667959762118 0.110211084054220 0.118731882987435 0.111964509179044 0.123084359184874 0.121205960421582 0.113046326290599 0.118069836115350 0.120390312652028 0.11772005986057 1 1 - 4368924 4369445 4369203.182 4368758 4371291 - gene protein_coding_gene FALSE TRUE AT1G12820.1 AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase similar to GRH1 (GRR1-LIKE PROTEIN 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT4G03190.1); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to AFB2 (AUXIN SIGNALING F-BOX 2), auxin binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G26810.1); similar to auxin-responsive factor TIR1-like protein [Populus tomentosa] (GB:ABG56238.1); similar to Os04g0395600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052659.1); similar to F-box domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA93930.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) -0.0416532000604755 -0.524396394279677 0.613557853377922 1 0.913291528851081 18.5595201513709 -0.0416532000604755 0.0602886180205619
AT2G32580_at 8.76071115994788 8.83688335343864 8.74874564843163 8.60112040797203 8.57109614443086 8.68892044881686 9.40024181341481 9.36486550858586 8.0863766027565 8.61392526693223 8.80272643782448 8.73750313884577 8.65465758626377 8.77291205675316 8.8925402969125 8.51907011370004 8.3831926654988 8.86741498243371 8.32292547826703 0.144805912007385 0.142078538474298 0.149046498350986 0.146139244027069 0.146650925791459 0.152957293840112 0.151339418437647 0.146257811605069 0.155670010180517 0.149791874348215 0.145795866830064 0.143916213950724 0.151665015083626 0.151214285633565 0.147411142685412 0.151910278082127 0.157479276036408 0.153155709632123 0.152527861647317 2 2|0 +|/ 13834929 13836159 13835448.556 13834740 13836390 + gene protein_coding_gene FALSE TRUE AT2G32580.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G05070.1); similar to unknown protein [Phytophthora sojae] (GB:AAO24648.1); contains InterPro domain Protein of unknown function DUF1068; (InterPro:IPR010471) -0.0377642096534232 -0.524316444177448 0.613611078900343 1 0.913249007391779 17.3939870318453 -0.0377642096534232 0.0357723138327178
AT3G19860_at 8.64812356012374 8.68705815091283 8.538370282588 8.4585987613484 9.40362679223424 8.93836252042138 8.79411173204744 8.40201689016211 8.87113762872538 8.45972515821211 8.4414289651047 7.9490944350788 8.28381376983955 8.49027515296853 8.20478693114645 8.37322720288666 8.38225537120639 8.25592319824971 8.48179318836337 0.130806126167592 0.124898097624855 0.133774487210563 0.132117239592065 0.134552483678909 0.132715371481298 0.129621245815006 0.127977950982229 0.144072768678571 0.124898097624855 0.126757302533174 0.125744875736999 0.124898097624855 0.126622254833812 0.130867322907379 0.128246820107785 0.135293370828293 0.130751132114213 0.126233599273121 3 3 + 6905257 6905808 6905460.364 6903839 6906132 + gene protein_coding_gene FALSE TRUE AT3G19860.1|AT3G19860.2 basic helix-loop-helix (bHLH) family protein|DNA binding similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G36060.2); similar to Os02g0433600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046730.1); similar to Os02g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046728.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT4G36060.1); similar to Os02g0433600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046730.1); similar to Os02g0433100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046728.1); similar to Prefoldin; Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE93168.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.0523530121435236 -0.5243003355017 0.613621803290376 1 0.913240440724922 17.1846932296016 -0.0523530121435236 0.106409426526538
AT1G33060_at 7.29214101681841 7.25085377249837 7.38894312213945 7.42268588438189 7.7978877141829 7.97170101580657 6.76685954935868 6.85845130034953 7.1929261848314 6.72581468383025 6.70368869610534 6.48298000727424 6.8933106207168 6.23913132316603 6.21467450073124 7.04793091635741 7.3161949238376 6.70754945799897 7.76684511400102 0.166760864324695 0.167235481287507 0.163249135226926 0.164975016470840 0.167679678266335 0.162602577196310 0.160884979708578 0.163333624478532 0.173856224204742 0.165879408155908 0.171689526111091 0.160997504275661 0.161070609427823 0.170098875814933 0.164527805907017 0.165634545583731 0.171245466898932 0.170364141200218 0.162226149703593 1 1|0 -|/ 11975856 11976261 11976069.7 11975320 11978501 - gene protein_coding_gene FALSE TRUE AT1G33060.1|AT1G33060.2 ANAC014; transcription factor|ANAC014 similar to no apical meristem (NAM) family protein [Arabidopsis thaliana] (TAIR:AT4G35580.1); similar to No apical meristem (NAM) protein [Medicago truncatula] (GB:ABE84505.1); contains InterPro domain No apical meristem (NAM) protein; (InterPro:IPR003441) 0.0376909596286787 0.52422707403405 0.613670578528737 1 0.913201483040602 14.3082960302725 0.0376909596286787 0.0352298338078367
AT2G18540_at 5.18424298589722 4.44905755890606 5.67579969451473 5.08283308386728 4.16089971291215 5.10448851691887 4.58234308141561 5.01759480844757 5.30491753704153 4.99528813845454 5.27563176485373 4.8229895463968 4.75202736813208 4.84710377656269 4.93979922816134 4.72841228843109 5.33620202500305 4.98175813468576 4.60750860341458 0.183128842334498 0.178366895199271 0.188223211878613 0.186868884033494 0.177906504180705 0.190833214155143 0.180712354508724 0.181576425947685 0.184342749984658 0.183043306362781 0.178711864708031 0.182066662746527 0.180910292475682 0.185396241614398 0.185714618273159 0.177906504180705 0.18348375085134 0.177906504180705 0.191921375122396 2 2 - 8049466 8050038 8049740 8049464 8052090 - gene protein_coding_gene FALSE TRUE AT2G18540.1 cupin family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT4G36700.1); similar to preproMP73 [Cucurbita maxima] (GB:BAB78478.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin 2, conserved barrel; (InterPro:IPR013096); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.0944740334723725 0.522426429036903 0.614870030367685 1 0.91224556422557 9.8720217351092 0.0944740334723725 0.243011570952444
AT1G54440_at 6.52294815317596 6.41041356838496 6.56299131261942 6.40173416967049 6.70588176780412 6.14335001956644 6.50733617799963 5.73552335424987 5.39080286426063 5.79668551746723 5.32444262898879 6.26168060607831 5.70712764196606 5.56237433663264 5.53197905329243 5.69808499751646 5.88344955471794 5.63110840600148 5.96878189107212 0.208410726760521 0.210647468594539 0.215092404940092 0.215298035786081 0.208410726760521 0.208678823651989 0.208581327742847 0.213589648625979 0.212413168577273 0.211402160498380 0.208721866478312 0.217964818684758 0.208410726760521 0.216389030432648 0.209531768931881 0.211440249337612 0.229139922344035 0.216000606322855 0.208410726760521 1 1 + 20330498 20331574 20331246.545 20326720 20331734 + gene protein_coding_gene FALSE TRUE AT1G54440.1 3'-5' exonuclease/ nucleic acid binding similar to 3'-5' exonuclease domain-containing protein / helicase and RNase D C-terminal domain-containing protein / HRDC domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G35910.1); similar to Nucleolar protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53938.2); contains InterPro domain HRDC; (InterPro:IPR002121); contains InterPro domain 3'-5' exonuclease; (InterPro:IPR002562); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337) 0.0703540747558928 0.522377764700726 0.614902463815585 1 0.912219772093227 12.0831661458085 0.0703540747558928 0.168744262004835
AT3G17940_at 8.1967468969045 8.26438968250278 8.18050473188385 8.33769140251512 8.05834286008474 8.07206875233888 8.31763582481931 8.25943235654341 8.03959808848431 8.07283063339828 8.20631669347452 8.16328488044663 8.02161766481125 8.36407215032722 8.06714666601283 8.16698917927236 7.95097218987494 8.22290328523206 7.80948830910561 0.164299994079708 0.153275105723482 0.166557704152565 0.163164487443211 0.161344283999259 0.159367710851229 0.156552995289430 0.15578512709726 0.169325140339702 0.155874037206993 0.152513325530353 0.152193237704779 0.152023390908489 0.158953040454668 0.152369454318274 0.149045808523008 0.155383347922704 0.160529652612376 0.160751416819488 3 3 - 6143756 6144275 6143943.909 6143525 6145343 - gene protein_coding_gene FALSE TRUE AT3G17940.1 aldose 1-epimerase family protein similar to aldose 1-epimerase family protein [Arabidopsis thaliana] (TAIR:AT3G47800.1); similar to Galactose mutarotase-like [Medicago truncatula] (GB:ABE90391.1); contains InterPro domain Galactose mutarotase-like; (InterPro:IPR011013); contains InterPro domain Aldose 1-epimerase; (InterPro:IPR008183) 0.0370206207659449 0.521111450304565 0.615746741713634 1 0.911549412843871 16.2705441546212 0.0370206207659449 0.0313698226392814
AT3G21240_at 5.00974732628061 5.04421135962432 5.02160202879556 5.41205493457032 4.34619756932277 4.59852034334388 4.82516705828025 5.32748388814225 4.39735122465932 4.75117914893865 4.61311236586092 5.12919067382701 4.99977443066494 4.5188944081412 4.81144920910188 4.9354236356013 5.06511712233505 5.29584076850864 4.66163103531117 0.196240520189679 0.186878780210711 0.190267735318356 0.190583718170455 0.186878697431476 0.194665401421718 0.186770289780883 0.188964053021953 0.194408262933842 0.18905930205448 0.190242973217280 0.190448759790587 0.190111700996518 0.188618820373264 0.187955223222455 0.187953154220794 0.187133591578772 0.190509583360748 0.190721265463882 3 3|0 -|/ 7454567 7455270 7454997.8 7454275 7457385 - gene protein_coding_gene FALSE TRUE AT3G21240.1 4CL2 (4-coumarate:CoA ligase 2); 4-coumarate-CoA ligase encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. The catalytic efficiency was in the following (descending) order: p-coumaric acid, caffeic acid, ferulic acid, 5-OH-ferulic acid and cinnamic acid. At4CL2 was unable to use sinapic acid as substrate. Identical to 4-coumarate--CoA ligase 2 (EC 6.2.1.12) (4CL 2) (At4Cl2) (4-coumaroyl- CoA synthase 2) (4CL2) [Arabidopsis Thaliana] (GB:Q9S725;GB:Q9LU35); similar to 4CL1 (4-COUMARATE:COA LIGASE 1), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G51680.1); similar to 4CL3 (4-coumarate:CoA ligase 3), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT1G65060.1); similar to 4CL5 (4-COUMARATE:COA LIGASE 5), 4-coumarate-CoA ligase [Arabidopsis thaliana] (TAIR:AT3G21230.1); similar to 4-coumarate--CoA ligase 2 (4CL 2) (4-coumaroyl-CoA synthase 2) (GB:O24146); similar to 4-coumarate:CoA ligase 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAC39366.1); similar to 4-coumarate:coA ligase 2 [Rubus idaeus] (GB:AAF91309.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0553272506891744 0.521023414761102 0.615805459295812 1 0.911502865197941 9.71036679507407 0.0553272506891744 0.118593620085105
AT3G56150_at 9.44585265679833 9.46678695972277 9.42777189862442 9.48994111354596 9.49150090492727 9.26482210925062 9.52686091632799 9.71402955035032 9.06303914594115 9.1576697279397 9.19659130698503 9.33525207439099 9.26257059738894 9.35231109473847 9.30530774403624 9.33566304804073 9.03318683571223 8.90320300642631 9.30443294383744 0.116508985390336 0.111946850279761 0.109982799215469 0.112950110305239 0.111486458092036 0.121912673931498 0.114139713381282 0.113971114049548 0.129169030695577 0.114522538819250 0.118606487220027 0.109530758657554 0.111080578119563 0.121867019724917 0.116226707487487 0.110545884050425 0.118606524322531 0.115630368061601 0.114073177555459 3 3 - 20844772 20845311 20845092.273 20844563 20848136 - gene protein_coding_gene FALSE TRUE AT3G56150.1 EIF3C (EUKARYOTIC TRANSLATION INITIATION FACTOR 3) member of eIF3c - eukaryotic initiation factor 3c Identical to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) (p105) (TIF3C1) [Arabidopsis Thaliana] (GB:O49160;GB:Q9LYM6); similar to TIF3C2 (eukaryotic translation initiation factor 3 subunit C2), translation initiation factor [Arabidopsis thaliana] (TAIR:AT3G22860.1); similar to putative translation-initiation factor 3 subunit [Prunus avium] (GB:AAL13083.1); similar to Eukaryotic translation initiation factor 3 subunit 8 (eIF3 p110) (eIF3c) (GB:Q9XHM1); similar to Proteasome component re (GB:ABE91931.1); contains InterPro domain Eukaryotic translation initiation factor 3 subunit 8, C-terminal; (InterPro:IPR008904); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717); contains InterPro domain Eukaryotic translation initiation factor 3 subunit 8, N-terminal; (InterPro:IPR008905) -0.0397050366603391 -0.518141298817624 0.617729371607785 1 0.909983039294129 18.6737247567123 -0.0397050366603391 0.0521232575743481
AT3G55010_at 4.61228560284366 4.63049454087574 5.31206582150042 4.67499517990795 4.38283283918103 3.80759854348122 5.26598134733055 5.85365726872531 4.44928547587347 4.59546837796293 4.79608958849581 5.17665533952943 4.86216065081989 4.91667600359007 5.80755522296077 4.5938308107961 4.34338210191789 4.6323148862577 4.4293709022216 0.221424075001053 0.216631340112548 0.223248146561480 0.230555182320198 0.219925013680826 0.217549959304564 0.218445322664759 0.228344474191313 0.228901760845946 0.223612816135137 0.216631340112548 0.217616564137538 0.216631340112548 0.223499090397048 0.218699570740359 0.218413820630360 0.229458881921167 0.222918192922161 0.221661503979926 3 3 + 20398805 20399463 20399118.273 20397596 20399783 + gene protein_coding_gene FALSE TRUE AT3G55010.1|AT3G55010.2 phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5) encoding phosphoribosylformylglycinamidine cyclo-ligase (syn. AIR synthetase)that phosphorylates 5-phosphoribosyl-N-formylglycinean=midine (FGAM) to form 5-aminoimidazole ribonucleotide (AIR)| Identical to Phosphoribosylformylglycinamidine cyclo-ligase, chloroplast precursor (EC 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) (PUR5) [Arabidopsis Thaliana] (GB:Q05728;GB:Q9M2W5;GB:Q9SV49); similar to 5'-aminoimidazole ribonucleotide synthetase [Solanum tuberosum] (GB:AAR06290.1); contains InterPro domain AIR synthase related protein, C-terminal; (InterPro:IPR010918); contains InterPro domain AIR synthase related protein; (InterPro:IPR000728); contains InterPro domain Phosphoribosylformylglycinamidine cyclo-ligase; (InterPro:IPR004733) -0.0732617185331029 -0.517827047396044 0.617939334051434 1 0.909817801178767 9.50871789009671 -0.0732617185331029 0.180047393864832
AT1G75010_at 6.3245122625614 6.23471176289961 6.30354341582762 6.24351253357617 6.79474176375475 6.00069677739702 6.87743441316863 6.60930820727609 6.35423658876978 6.39659379051876 6.65353160053273 6.6007972325714 6.38306164554307 6.28335142094464 6.53279712552045 6.28998558731594 6.18055836513832 6.50151958513123 6.38330229784019 0.197563952532120 0.197563952532120 0.210144782076460 0.197563952532120 0.197563952532120 0.197563952532120 0.202143696928225 0.208131348607306 0.208405807786241 0.197917452093109 0.203537856930535 0.211569377015717 0.203523347711904 0.206304879644560 0.212142512947655 0.200507126001621 0.221071851220501 0.216568784319232 0.197563952532120 1 1|0 -|/ 28168682 28169808 28169197.75 28168501 28173715 - gene protein_coding_gene FALSE TRUE AT1G75010.1 similar to phosphatidylinositol-4-phosphate 5-kinase family protein [Arabidopsis thaliana] (TAIR:AT1G60890.1); similar to ARC3 homologue [Oryza sativa (japonica cultivar-group)] (GB:BAD26753.1); contains InterPro domain MORN motif; (InterPro:IPR003409) -0.0628559721049471 -0.517330037741254 0.618271479348497 1 0.909556657227307 12.8266799150811 -0.0628559721049471 0.146235485398963
AT1G32290_at 5.68161198299242 5.75645029986727 6.26460216110196 6.02971584606407 6.00248865334446 5.72970806818738 6.02243361558351 5.80176582655441 6.99731869277087 6.74847263090591 6.56688499372635 6.25864354611627 6.29074566108032 6.49427666209766 6.59670119711017 6.74360165675658 6.66809723556276 6.80769914496485 6.22412162497962 0.145004481466741 0.147965442131925 0.143128932438485 0.147218622359489 0.158016212385943 0.151645621087039 0.155692733472441 0.148117745277522 0.153191408770412 0.149108417776007 0.143128932438485 0.150799337651347 0.161270648672329 0.155617420369224 0.150159711520703 0.149505166930480 0.155232277405668 0.146126069461312 0.149309499849840 1 1|0 -|/ 11650216 11650519 11650381.4 11650202 11650547 - gene protein_coding_gene FALSE TRUE AT1G32290.1 similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT5G42635.1) 0.0438784317749019 0.517085573367817 0.61843488580235 1 0.909428294190076 12.5160815125764 0.0438784317749019 0.0742071384304757
AT3G55440_at 12.2582038736220 12.3534989322378 12.1575931688797 12.2452865642003 12.2602853933699 12.156554640886 12.3787534203115 12.605304764773 12.2867403425101 12.4649917554332 12.5200281859584 12.5353088062035 12.4186033571804 12.4979663313749 12.5503513774760 12.3973006740868 12.086295375898 12.5212772954052 12.2223528773083 0.0731591571451352 0.0735196424842295 0.0757733953002184 0.0746150014947816 0.0730651295352585 0.0766633240817135 0.0750251864649466 0.075238102637735 0.0774754409422355 0.0729893872130374 0.0729893872130374 0.0729893872130374 0.0729893872130374 0.0776470008215232 0.0748706116579616 0.0729893872130374 0.0805426579000753 0.0743889089435677 0.0732768574598898 3 3|0 +|/ 20565554 20566830 20566362.778 20564667 20567537 + gene protein_coding_gene FALSE TRUE AT3G55440.1 ATCTIMC (CYTOSOLIC TRIOSE PHOSPHATE ISOMERASE); triose-phosphate isomerase Encodes a cytosolic protein with triosephosphate isomerase activity. Identical to Triosephosphate isomerase, cytosolic (EC 5.3.1.1) (TIM) (Triose- phosphate isomerase) (CTIMC) [Arabidopsis Thaliana] (GB:P48491;GB:Q9M2T5); similar to TIM (TRIOSEPHOSPHATE ISOMERASE), triose-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT2G21170.1); similar to cytosolic triose phosphate isomerase (GB:AAA03449.1); contains InterPro domain Triosephosphate isomerase; (InterPro:IPR000652) -0.0389069361023537 -0.51520195277681 0.619694698464355 1 0.908441146740762 24.6847283033842 -0.0389069361023537 0.0485962826343783
AT1G52540_at 4.44487116382418 4.38405041448199 4.409736253189 4.46746029730493 4.84113582917515 4.45232623005532 5.17287237952675 5.03276449995894 4.34068059153307 4.67819702465993 5.08541866765425 4.75187495812291 4.92004928327433 4.95597188564665 4.02783177012521 5.32792053040426 4.78363724154924 4.91761370554802 4.6114720492366 0.179834250768924 0.187866664154529 0.182788593995018 0.187715506438776 0.179834250768924 0.193527425275367 0.185891085166491 0.192898342520455 0.184511907129084 0.184020017121393 0.179834250768924 0.189972795545094 0.186229052217520 0.189096984300354 0.192734421862769 0.183857414852614 0.188558560391826 0.183247554946752 0.19076201063219 1 0|1 /|- 19574039 19574524 19574347.1 19573727 19575873 - gene protein_coding_gene FALSE TRUE AT1G52540.1 protein kinase, putative similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G15890.1); similar to Os02g0186500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046121.1); similar to putative receptor protein kinase PERK1 [Oryza sativa (japonica cultivar-group)] (GB:BAD67605.1); similar to Os06g0166900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056916.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) 0.0434324523986056 0.514920009352011 0.61988338354307 1 0.908293678629404 9.3455219553231 0.0434324523986056 0.0729778618989626
AT2G02960_at 8.01118797463839 7.78655707833154 7.84115295723804 7.5584031849628 8.16633205066291 7.53521180318558 7.20765886817635 7.06232247289644 7.96122226753616 7.38744666600961 7.79116694997075 7.5383660723111 7.56201607117305 7.63355069174751 7.64638700760169 7.63661236240549 7.05783588648665 7.75594539543974 7.81542091214703 0.161581691275791 0.155000261958503 0.161284238646988 0.16197733346703 0.15325716323691 0.169352568895060 0.158872057218341 0.163460444069170 0.173894948720402 0.155850496495137 0.15200716932861 0.154849572369594 0.157694921111084 0.163798396205580 0.159580024295471 0.155941748669834 0.172313617143025 0.168518989753243 0.155916094349160 2 0|2 /|- 862371 863092 862650.333 862086 864446 - gene protein_coding_gene FALSE TRUE AT2G02960.1|AT2G02960.2|AT2G02960.3|AT2G02960.4|AT2G02960.5 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G14260.2); similar to Zinc finger protein, putative [Solanum demissum] (GB:ABI34360.1); similar to Os02g0577100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047219.1); similar to Os11g0600700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068224.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0573575866230247 0.514666931615583 0.620052776139649 1 0.90816137274531 15.2956524670313 0.0573575866230247 0.128322327116584
AT4G14605_at 6.51114169168731 7.14311570761429 6.55279639711015 6.71477628404599 7.70373477367381 6.94163151894153 7.20391389790015 7.24546776408153 6.11824233688855 6.49676960131101 6.28458565254707 7.08379993067568 6.96328861462535 6.67065714826067 6.55970273815181 6.63958621195479 5.78989681930184 6.1964961511747 6.38755278551098 0.188212852658095 0.182991627279659 0.188494449096706 0.179603397161391 0.193641632296735 0.187380325387887 0.185988543041627 0.183509051139985 0.202521537984703 0.183721894048416 0.184933361296733 0.181896225106078 0.181481557994656 0.190869559714914 0.181949380181961 0.188319753222978 0.210866807815027 0.183066823160275 0.182976250715518 4 4 + 8379855 8380345 8380051.818 8378425 8380709 + gene protein_coding_gene FALSE TRUE AT4G14605.1 mitochondrial transcription termination factor-related / mTERF-related similar to PDE191 (PIGMENT DEFECTIVE 191) [Arabidopsis thaliana] (TAIR:AT4G38160.2); similar to Os08g0515800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062235.1); similar to Mitochondrial transcription termination factor, mTERF (ISS) [Ostreococcus tauri] (GB:CAL50299.1); similar to Os02g0602400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047357.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) 0.0708191976108465 0.514361714956955 0.620257098738322 1 0.908001890179868 13.4309172041685 0.0708191976108465 0.173759010972407
AT3G13060_at 9.08056429471439 9.11884387105428 9.14540870209596 9.11502834483574 9.23610218339769 8.7396914376973 8.95379640012512 8.81506362473692 8.00404760556025 8.60121228859253 8.41206285411816 8.3189777124164 8.6441290809551 8.34293314184202 8.12309469491216 8.69372612377744 8.52890046288481 8.21510958213173 8.54277657452544 0.147017344252577 0.138858934338766 0.136582424714616 0.137453712740080 0.136980279609122 0.143058701026445 0.132609857279557 0.141401560259475 0.163836814992926 0.144418327080338 0.146827787435996 0.132966875083530 0.138981818249051 0.139112419257365 0.142910733064883 0.133176518606977 0.147819041315434 0.145001321378092 0.142635074932598 3 0|3 /|+ 4183006 4183604 4183369 4180582 4183982 + gene protein_coding_gene FALSE TRUE AT3G13060.1|AT3G13060.2 ECT5 similar to ECT2, protein binding [Arabidopsis thaliana] (TAIR:AT3G13460.1); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE91083.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.0470892515429941 0.513743826376402 0.62067084127697 1 0.907679300330739 17.4218351220934 0.0470892515429941 0.0895979894515824
AT4G26410_at 8.89559198109047 8.78254233439989 9.01281060649346 8.60874317602404 9.03749558625866 8.61548043590596 9.33547482608034 9.11369991969884 8.22807899209709 8.38274386026817 8.71534103281682 8.79412661223195 8.56113108393479 8.46231948149944 9.03912221439913 8.59295510175878 8.46242482004085 8.80587364856951 8.47413824092066 0.148327872299205 0.143821133253635 0.149945908943670 0.148266643996170 0.153032055047068 0.154003940342176 0.159929064445897 0.147143723639208 0.150495934688317 0.15231808317933 0.156616453935579 0.143821133253635 0.153564565687811 0.153918073324157 0.151171568095855 0.150396920794684 0.159421430109537 0.146793026066167 0.14578838897818 4 4|0 +|/ 13346972 13348776 13348133.125 13346663 13349025 + gene protein_coding_gene FALSE TRUE AT4G26410.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G45060.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE90926.1) 0.0521566187487907 0.51315122401836 0.621067785875838 1 0.90737025269032 17.4456375818281 0.0521566187487907 0.109904237233060
AT4G17640_at 9.46423150157056 9.6373141550654 9.26864920962694 9.48160832868203 9.99963228121215 9.7582257696717 9.40911255461427 9.43906767388887 9.56415692583505 9.31918823378895 9.41909042742107 9.2365917787613 9.34604948076588 9.48986260610693 9.21764844735848 9.44581932072115 9.26363940746051 9.39847885466466 9.3438864949659 0.122714113044755 0.116971558814639 0.131819820267907 0.119252261212573 0.120766971958876 0.125406624014403 0.120290612758542 0.122304688958284 0.131576232316343 0.120389912504479 0.120203973967003 0.125394087813706 0.117514040661978 0.128249750739060 0.120845422307199 0.118337049252167 0.122473712410962 0.115622478475991 0.118367399618877 4 4|0 +|/ 9826063 9826920 9826439 9825210 9827285 + gene protein_coding_gene FALSE TRUE AT4G17640.1 CKB2 (casein kinase II beta chain 2); protein kinase CK2 regulator Encodes casein kinase II beta (regulatory) subunit. Identical to Casein kinase II subunit beta' (CK II beta') (CKB2) [Arabidopsis Thaliana] (GB:P40229); similar to CKB1 (casein kinase II beta chain 1), protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT5G47080.1); similar to casein kinase II beta chain, putative [Brassica oleracea] (GB:ABD65181.1); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) 0.0413338741121498 0.512829505863764 0.62128333817215 1 0.907202613405243 18.9378425635936 0.0413338741121498 0.0634626171461678
AT2G18250_at 6.77445292563978 6.71262194153021 6.87199468293842 7.16136984334549 7.11404309727235 6.65138264736674 6.90820543827696 6.93364634089489 6.51537880626146 6.3466632018337 5.83867649777285 5.70395726259417 6.2874076904327 5.8928558052385 6.34481554784024 6.28478284301687 6.515058412641 5.64245208316181 5.9713115001403 0.217473865261554 0.217038123130193 0.235334298758796 0.214361033829746 0.216490043774074 0.229412298934578 0.230603712697143 0.223281054163318 0.224297710726526 0.223646926116453 0.21521565429496 0.217491279314124 0.213518288615602 0.215723296133362 0.219893562065333 0.213094090285262 0.225791749366171 0.230108834543711 0.219655120785978 2 2|0 +|/ 7947127 7948133 7947558.5 7946989 7948760 + gene protein_coding_gene FALSE TRUE AT2G18250.1 ATCOAD (4-PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE); nucleotidyltransferase/ pantetheine-phosphate adenylyltransferase At2g18250 encodes pantetheine-phosphate adenylyltransferase catalyzing the formation of dephospho-CoA from pantetheine 4'-phosphate. The enzyme is involved in coenzyme A biosynthesis. similar to Cytidylyltransferase [Medicago truncatula] (GB:ABE77654.1); contains InterPro domain Cytidyltransferase-related; (InterPro:IPR004821); contains InterPro domain Cytidylyltransferase; (InterPro:IPR004820) -0.048283914381298 -0.512119224857854 0.621759365581158 1 0.906832851991135 13.0617322499493 -0.048283914381298 0.095142770092404
AT1G67050_at 6.1001794511918 6.56909260752408 5.82330838048782 6.49142699978836 6.91665114426205 6.30251129155652 6.77128117775917 7.07380060333926 6.91855311080882 7.01912979236415 7.3354546459428 7.67767533133736 6.85613382805844 7.32602003909982 6.68511210849244 7.39577694735996 7.0810452186661 7.2801990409696 7.38256910898091 0.208127714575550 0.195334307634887 0.207373220079352 0.206533290707669 0.200044257008141 0.204056135137235 0.197601623812072 0.198603240257062 0.213040885930997 0.198928704675309 0.200854272903462 0.203823990141597 0.208312770915367 0.211305865310547 0.198660054876159 0.195487488605199 0.21111803013418 0.19603903599816 0.195334307634887 1 1 - 25032564 25033068 25032744.818 25032290 25033451 - gene protein_coding_gene FALSE TRUE AT1G67050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G38320.1); similar to Gallus gallus vitellogenin (GB:AAA98791.1); similar to vitellogenin (GB:AAA49139.1); similar to vitellogenin [Gallus gallus] (GB:BAD32701.1) -0.073593765828514 -0.510709537427831 0.622704688780273 1 0.906100410596833 13.6617453648430 -0.073593765828514 0.184361932379278
AT3G49050_at 3.98251779546743 4.83867861228537 4.83290798447236 4.21626403607047 5.20088373911098 4.81521742957255 4.82884726801104 5.06429283669273 5.17980757964606 5.11306508375639 5.51204220920983 5.42857903151792 5.1475359683347 5.70569641298301 4.69907465748448 5.50753317595547 4.61543895319333 4.75143589369502 5.01542828843852 0.263019033783346 0.247257288156506 0.260351805769272 0.268963497810367 0.247395070587247 0.278884126062629 0.247253703053293 0.249088296715967 0.268670140172819 0.249177230967370 0.254513817451353 0.249706951653393 0.247253703053293 0.247409235464912 0.247432092208014 0.25648514593794 0.271387725351743 0.266170933139491 0.247253703053293 3 3|0 +|/ 18193729 18194554 18194201.3 18191953 18194737 + gene protein_coding_gene FALSE TRUE AT3G49050.1 lipase class 3 family protein / calmodulin-binding heat-shock protein, putative similar to lipase class 3 family protein / calmodulin-binding heat-shock protein-related [Arabidopsis thaliana] (TAIR:AT4G00500.2); similar to calmodulin binding heat shock protein [Gossypium hirsutum] (GB:AAV73918.1); similar to calmodulin-binding heat shock protein [Gossypium hirsutum] (GB:AAV65493.1); contains InterPro domain Lipase, class 3; (InterPro:IPR002921); contains InterPro domain Lipase 3, N-terminal; (InterPro:IPR005592) 0.0779421115210885 0.509874903886588 0.623264734584539 1 0.90566764464796 9.85929322358222 0.0779421115210885 0.198631342639307
AT3G48040_at 4.72574389052487 4.6984923680597 3.84576649082873 4.28315007989188 4.47603278944733 4.85962502331897 4.13335397335385 4.55974081782892 5.00060177054111 4.76989794969546 4.81534953342346 4.96983887285079 5.13465491202077 4.86868085072744 5.2024569521708 5.04401126283747 4.32566201211266 4.74825199701574 4.74071264081688 0.20247467513701 0.209219067053746 0.202625630139617 0.198416790929735 0.197787038277434 0.197048104159347 0.200550295786589 0.201621637914030 0.213435436328197 0.196389896397897 0.212091513204841 0.199857315847626 0.196389896397897 0.203805413602545 0.210214282670662 0.196389896397897 0.207644046170052 0.199426289296475 0.20443224825724 3 3|0 +|/ 17742581 17743962 17743358 17742465 17744477 + gene protein_coding_gene FALSE TRUE AT3G48040.1 ARAC8/ATROP10/ROP10 (rho-related protein from plants 10); GTP binding / GTPase Encodes a member of the Rop subfamily of Rho GTPases in Arabidopsis that contains a putative farnesylation motif. It is localized to the plasma membrane and involved in the negative regulation of ABA signalling. Identical to Rac-like GTP-binding protein ARAC8 (GTPase protein ROP10) (ARAC8) [Arabidopsis Thaliana] (GB:Q9SU67;GB:O82482); similar to ARAC10/ATRAC10/AtROP11 (rho-related protein from plants 11), GTP binding [Arabidopsis thaliana] (TAIR:AT5G62880.1); similar to small GTPase [Gossypium hirsutum] (GB:ABG66964.1); contains InterPro domain Ras small GTPase, Rho type; (InterPro:IPR003578); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.0558233272215197 -0.509407981938321 0.623578155847951 1 0.905425829920624 9.31058022223814 -0.0558233272215197 0.124910922569121
AT1G09130_at 11.0194880339365 11.0467130045647 11.2336292396500 11.1099387084699 11.1365866091572 11.0752119134397 11.2186894150394 11.3143421532061 10.7222044963710 10.9812298782017 10.7713592187302 10.7245855713488 11.0734627990224 10.8741519582631 10.6671147223032 11.1755765310865 11.095656669284 11.0211963586153 10.8242192356579 0.0765130112872706 0.0753997575036284 0.0792165140735554 0.0787518521521181 0.0776146722878137 0.0848923923165395 0.0793053910680094 0.0756878815351241 0.092609744856315 0.0764891165427992 0.081082569003907 0.0763933839021138 0.0753997575036284 0.0915065980348001 0.0784579034893551 0.0760754739883159 0.0835725806717513 0.0787906053579448 0.0767475520237543 1 0|1 /|- 2940104 2941410 2940941.5 2939572 2942269 - gene protein_coding_gene FALSE TRUE AT1G09130.1|AT1G09130.2 ATP-dependent Clp protease proteolytic subunit, putative|endopeptidase Clp similar to CLPR1 (Clp protease proteolytic subunit 5), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G49970.1); similar to Peptidase S14, ClpP [Medicago truncatula] (GB:ABE92867.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.0359351205820047 0.508644080815724 0.624091098820464 1 0.905030659609582 22.0282944756789 0.0359351205820047 0.0294482124178383
AT2G44870_at 9.55746829674404 9.74214480776626 9.72303064632834 9.81438468108115 10.2419675435418 9.81511404238112 10.2452499031206 10.3218966134763 10.0300158847889 9.78360951762227 9.99530416705206 10.0119510514564 10.0505466942534 9.9902826460517 10.0293037818268 10.2065774225241 9.86905661985321 9.84234605024347 9.71021822859797 0.110942563665095 0.110405995876533 0.117869947473062 0.114245945518539 0.111328263529368 0.120294842811875 0.114754732360448 0.111646345172467 0.108885715482475 0.116520979115462 0.108470937476830 0.108470937476830 0.109964389572727 0.115829188279368 0.113535250537713 0.108470937476830 0.120715348057903 0.108470937476830 0.109141733754133 2 2|0 +|/ 18510542 18511452 18510947.1 18510213 18511756 + gene protein_coding_gene FALSE TRUE AT2G44870.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAL86463.1); contains InterPro domain Sigma factor, regions 3 and 4; (InterPro:IPR013324) 0.0450370834387863 0.507796571018786 0.624660436430331 1 0.90459288793199 19.8530081990520 0.0450370834387863 0.083089598274126
AT3G12980_at 8.10900614589923 7.81880372601828 7.57176604606624 7.68014638879814 7.74795891311359 8.23675996000664 7.46150781463782 7.49765230585654 7.24618211403039 7.13020267150513 7.36927185659582 7.4475692069695 7.21218346982568 6.91829136858733 7.15869679315866 7.19996216642337 7.42570141394551 7.28857853899237 7.34876240909737 0.156898477419168 0.153097543590365 0.156291181696904 0.149143112735811 0.160399191357224 0.161877338252055 0.158339545085611 0.156435602886376 0.162923941919898 0.155469864887702 0.153618707075631 0.155708333643838 0.151114870746679 0.153814950553863 0.151163179035897 0.156591277192971 0.153259371199027 0.15323830510843 0.158206130091228 3 3 + 4153633 4154247 4154000.364 4146926 4154902 + gene protein_coding_gene FALSE TRUE AT3G12980.1 histone acetyltransferase 5 (HAC5) Identical to Histone acetyltransferase HAC5 (EC 2.3.1.48) (HAC5) [Arabidopsis Thaliana] (GB:Q9LE42;GB:Q8LRK5;GB:Q8LRK6); similar to HAC1 (P300/CBP acetyltransferase-related protein 2 gene), transcription cofactor [Arabidopsis thaliana] (TAIR:AT1G79000.1); similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to histone acetyltransferase 4 (HAC4) [Arabidopsis thaliana] (TAIR:AT1G55970.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD10378.1); similar to Zinc finger, TAZ-type; Zinc finger, ZZ-type; Transcriptional coactivation; Zinc finger, FYVE/PHD-type [Medicago truncatula] (GB:ABE91077.1); similar to putative HAC5 [Oryza sativa (japonica cultivar-group)] (GB:BAD53797.1); contains InterPro domain Zinc finger, TAZ-type; (InterPro:IPR000197); contains InterPro domain Transcriptional coactivation; (InterPro:IPR009255); contains InterPro domain Protein of unknown function DUF902, CREBbp; (InterPro:IPR010303); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433) 0.0491157245805827 0.50731453905852 0.624984373154515 1 0.90434420477837 15.0125739542278 0.0491157245805827 0.100341360790789
AT3G15120_at 7.43422682053681 7.98904464065994 7.48274781602404 7.76037742154456 7.88560732821936 7.71590004119194 7.38287482579137 7.90182770745431 7.0906344192828 7.35884068700734 7.38104043770005 7.5047406667034 7.32650293320882 7.1744469263285 7.11720590589438 7.5134368659507 6.59383555380068 7.00938170197875 7.62444223535939 0.215443779804006 0.203251427494922 0.209806389718385 0.202666240340310 0.208718234758794 0.234575671342937 0.218199444221197 0.201331701588015 0.239187469880711 0.212752851633369 0.215492063317049 0.203473904119133 0.210715627686273 0.223055530855504 0.217276180643367 0.205181851182567 0.230689188486806 0.213707450150881 0.209820282245239 3 3 - 5088531 5089051 5088804 5088373 5095489 - gene protein_coding_gene FALSE TRUE AT3G15120.1 AAA-type ATPase family protein similar to cell division cycle protein 48-related / CDC48-related [Arabidopsis thaliana] (TAIR:AT1G05910.1); similar to hypothetical protein UM04657.1 [Ustilago maydis 521] (GB:XP_760804.1); similar to Os01g0668300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043815.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.0606169600682389 -0.506558556877844 0.625492584047327 1 0.903954634675224 14.9743489857589 -0.0606169600682389 0.143020405581792
AT1G72050_at 7.50514128611944 7.55971073488675 7.49102775605248 7.12704015789275 7.96191125537618 7.32678455311766 7.98203699095859 7.21068932974984 6.62128605250965 7.23711469380586 7.27834232974764 7.55275603048311 6.59797210578483 6.26175189482969 6.905710398936 6.99038318676038 7.44831013810712 5.93957177151336 6.93127560084422 0.209191141424327 0.207533582197760 0.210926644583323 0.207964657434129 0.212324531636695 0.208732026517282 0.214839690421971 0.207551654305979 0.227681342148136 0.211458237945129 0.205406028724904 0.204744561019557 0.219028340969448 0.214385559371290 0.225537549619123 0.204744561019557 0.211765035544412 0.229237418609000 0.212825213490569 1 1|0 +|/ 27119976 27120851 27120476.889 27118686 27121132 + gene protein_coding_gene FALSE TRUE AT1G72050.1|AT1G72050.2 zinc finger (C2H2 type) family protein similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to Zinc finger, C2H2-type [Medicago truncatula] (GB:ABE84389.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to REF6 (RELATIVE OF EARLY FLOWERING 6), transcription factor [Arabidopsis thaliana] (TAIR:AT3G48430.1); similar to transcription factor IIIA [Lycopersicon esculentum] (GB:ABI85391.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0728730192592644 -0.505902458745801 0.625933818978788 1 0.90361697767547 14.4214136818893 -0.0728730192592644 0.184270954367014
AT4G10730_at 5.33978592958812 5.14377405333262 5.27825555408633 4.81322097115035 5.83632397273729 5.44547693506202 5.86577871385347 4.82448724063239 4.65193540753027 4.06813753263669 4.61467638241792 4.51485298798746 4.90274175850539 4.4759406628777 4.54961374897421 4.43789280457508 4.26134411088602 4.93623228235898 4.70177481571578 0.223290653308821 0.215244676654425 0.216479873756377 0.222181979548233 0.224470883873003 0.220471325988863 0.216922910387495 0.215244676654425 0.215244676654425 0.225328775640019 0.216510946543902 0.223342158769076 0.220200543621989 0.223647801677368 0.215517983801569 0.216575425336449 0.232077565163975 0.215244676654425 0.218166768396148 4 4|0 -|/ 6609789 6611156 6610444 6609420 6614877 - gene protein_coding_gene FALSE TRUE AT4G10730.1 kinase similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G24100.1); similar to putative Ste20-related protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAG13441.1); similar to Os03g0114300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048743.1); similar to Os10g0518800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065076.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.0812877321346376 0.505550869225878 0.626170333191973 1 0.903436202981373 9.8486934684472 0.0812877321346376 0.211362533619015
AT4G24840_at 6.97540939786487 6.91855878132849 6.74571947860601 6.42209740056758 7.06476701732829 6.43715392444846 6.76509286612801 6.47247281673355 7.01789268075095 6.8342859041319 7.23093901938403 7.42298425523493 6.98134006192819 7.3062761234142 7.20675842022903 6.85933475409716 6.79367913800405 6.92836130135741 6.72987354723224 0.186453653685704 0.18149842568332 0.186587468251955 0.192960873108293 0.18658318271673 0.180484133037719 0.188436042750574 0.183303799740694 0.199667404848957 0.182270218253693 0.184778772109849 0.181718624906353 0.176778468311368 0.195442865533775 0.199787332545435 0.179713276562005 0.192114393868558 0.180688255628495 0.192433677929337 4 4 - 12796553 12797648 12797021.091 12796257 12800948 - gene protein_coding_gene FALSE TRUE AT4G24840.1 similar to Os03g0849600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051898.1); similar to Low density lipoprotein receptor (ISS) [Ostreococcus tauri] (GB:CAL52868.1); contains InterPro domain COG complex component, COG2; (InterPro:IPR009316) 0.0575380399458099 0.505476092277521 0.626220641521964 1 0.903397770550855 13.7011055494979 0.0575380399458099 0.132642525458538
AT1G33400_at 5.84232151552027 5.78827751927632 5.95057725042974 5.83835221547428 7.20702005244656 6.39133414833492 6.20580711534849 6.0961104803802 5.95101330967615 5.84919216959451 5.31525400814314 5.51204401976084 4.95592510467784 5.89887381908332 4.7172747392152 5.52472659029145 5.21177292777608 5.35876569725324 5.59016914976299 0.225435169630794 0.219421856301218 0.220560138005341 0.22138666214616 0.219421856301218 0.225010224159442 0.224534092388566 0.226950793858709 0.227860913673661 0.223003758398677 0.220463992021185 0.224328681424119 0.228206697269893 0.231538878814650 0.226370464002768 0.219421856301218 0.24299167218952 0.225656598146126 0.22406273545506 1 1 - 12104909 12105838 12105395.545 12104764 12109504 - gene protein_coding_gene FALSE TRUE AT1G33400.1 tetratricopeptide repeat (TPR)-containing protein similar to TTL4 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 4), binding [Arabidopsis thaliana] (TAIR:AT3G58620.1); similar to Os10g0506800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065013.1); similar to TPR Domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP54526.2); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Nuclear protein SET; (InterPro:IPR001214); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0606350853480131 -0.504235554116377 0.62705555020629 1 0.902760959894072 11.7192856152945 -0.0606350853480131 0.144050941019840
AT4G13340_at 3.58798937103358 4.42888269401371 4.10068899684935 4.76949548329652 3.29489227490165 4.55394988689091 3.39114617560988 4.27597448420239 6.64448875738983 5.65249651953009 6.6655369207578 4.93141182019655 5.78732146339103 6.14455659704236 5.40988099516925 5.10857356114462 4.50390728905973 5.70620024619854 5.78249491022299 0.230184461096906 0.228934417166994 0.234147369332254 0.233032073895841 0.233960331749335 0.238515301411046 0.24130474991642 0.232278595621456 0.238461827945650 0.230192317196566 0.230055343617040 0.229981448980533 0.228742146193699 0.230685705277664 0.228742146193699 0.228742146193699 0.250484154133375 0.235061896418889 0.234260868903926 4 4 + 7760350 7760836 7760573.091 7758606 7761053 + gene protein_coding_gene FALSE TRUE AT4G13340.1 leucine-rich repeat family protein / extensin family protein similar to LRX2 (LEUCINE-RICH REPEAT/EXTENSIN 2), protein binding / structural constituent of cell wall [Arabidopsis thaliana] (TAIR:AT1G62440.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G24480.1); similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT4G18670.1); similar to extensin-like protein [Zea mays] (GB:CAA84230.1); similar to extensin-like protein [Zea mays] (GB:AAD55980.2); similar to extensin-like protein [Lycopersicon esculentum] (GB:AAD55979.1); contains InterPro domain Extensin-like region; (InterPro:IPR006706); contains InterPro domain Pistil-specific extensin-like protein; (InterPro:IPR003882); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090); contains InterPro domain Leucine rich repeat, N-terminal; (InterPro:IPR013210) -0.117780652412300 -0.503053540520081 0.627851598552016 1 0.90215555677597 9.8297109245169 -0.117780652412300 0.3247969533345
AT1G06040_at 11.5807989964486 11.9328858876223 11.9415685544854 12.0965906118048 12.2858590499909 12.1310151536661 12.2642257619398 12.4689375809644 12.3025580322389 12.3349272129725 12.3843457710835 12.2293567801932 12.6318567812699 12.4679758585844 12.0474692829216 12.4427717000874 12.3150793363791 12.3529932303786 12.3323446427490 0.0755352140292857 0.0736638012527922 0.0786974861356844 0.0750451936521354 0.0760423487612779 0.0784597729207606 0.0766484693106571 0.074311764714924 0.0832046727395534 0.0737417080165879 0.0766290091026466 0.0736638012527922 0.073760231831482 0.0750848679852543 0.0776992572189799 0.0741898540084979 0.0803815695310412 0.0755899195203636 0.0741180724147865 1 1 - 1828670 1829479 1829049.545 1828412 1829889 - gene protein_coding_gene FALSE TRUE AT1G06040.1|AT1G06040.2 STO (SALT TOLERANCE); transcription factor/ zinc ion binding Fully complements calcineurin deficient yeast but does not encode a phosphoprotein phosphatase. Sequence has similarities to CONSTANS. Identical to Salt-tolerance protein (STO) [Arabidopsis Thaliana] (GB:Q96288); similar to STH (salt tolerance homologue), transcription factor/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G31380.1); similar to salt-tolerance protein [Glycine max] (GB:ABB29467.1); contains InterPro domain Zinc finger, CONSTANS-type; (InterPro:IPR002926); contains InterPro domain Zinc finger, B-box; (InterPro:IPR000315) 0.04387537451752 0.502338246672769 0.628333575946676 1 0.901789845072813 24.4288640605814 0.04387537451752 0.0800329790438265
AFFX-r2-Bs-dap-5_at 5.5126056269443 6.40230253822371 7.62844992963199 6.31192517492083 8.24082672205647 6.01573832925014 8.23657346301525 5.96523342813647 8.01560598460196 8.35854472095407 8.63644925066635 8.80984365676182 7.78520078762839 8.30841477206438 8.08017580565548 8.56839661796245 7.69272621223619 7.32399709492087 8.34257787084669 0.239242981546456 0.234634058219816 0.230913690298634 0.232443688810558 0.222341915797898 0.235198911190393 0.218915044407556 0.221225365700811 0.242200403002015 0.225586155206894 0.223101691358192 0.222254831488540 0.227074238891347 0.229341379039516 0.218915044407556 0.230887899600364 0.220913670564369 0.231288090084336 0.221214992538429 NA NA NA NA NA FALSE FALSE 0.215898637077175 0.502255424850379 0.628389394886093 1 0.901747531891543 14.9839869266247 0.215898637077175 0.615130876648096
AT1G08410_at 7.77939450231272 7.72804841813665 7.7498901290456 8.03196332311019 6.54796755002996 7.66151875959736 7.6547556564992 8.10198502352932 8.58748081658425 7.50934035195015 8.00923185741357 8.17989240588085 8.20578175632035 8.57485956223206 8.42096480467689 7.97791613345418 8.84528840152425 8.73250017055922 7.56503525233269 0.248344671858045 0.248344671858045 0.27309935319899 0.248344671858045 0.248344671858045 0.248344671858045 0.248344671858045 0.274047961725798 0.248344671858045 0.260079338720154 0.248344671858045 0.248344671858045 0.248344671858045 0.248344671858045 0.248344671858045 0.263591422088129 0.248344671858045 0.248344671858045 0.258761192424528 1 1 + 2646460 2646468 2646464.333 2646186 2649376 + gene protein_coding_gene FALSE TRUE AT1G08410.1 GTP-binding family protein similar to GTP-binding family protein [Arabidopsis thaliana] (TAIR:AT2G27200.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAU89192.1); similar to GTP1/OBG [Medicago truncatula] (GB:ABE78155.1); similar to Os12g0618300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067291.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain GTP-binding; (InterPro:IPR005289) 0.0814039766058059 0.50206974771712 0.628514543784957 1 0.901652694319018 15.7847353503476 0.0814039766058059 0.213511314515777
AT4G32470_at 11.0252863684635 11.0123080667279 11.2548737657859 11.2935869519428 11.0974930750657 10.8810542702841 11.2819491150134 11.2748184818928 10.9480835281325 11.1372783953584 11.0084313701335 11.0537193381729 11.1245245673907 11.1181605563945 11.1106555119921 11.0890426491461 11.0892506847957 11.1023680944928 10.9065072649859 0.076636470416595 0.0748829738694132 0.0816350585712385 0.0748829738694132 0.075698053107394 0.0809834029315838 0.0760396856855373 0.076935826262992 0.0806495965145376 0.0748829738694132 0.0765769056469976 0.0759396714015816 0.0749067873847064 0.0785389988507765 0.077291131115008 0.077183063946065 0.080574795443773 0.0780844515023391 0.0748829738694132 4 4|0 -|/ 15669672 15671046 15670558 15669225 15671200 - gene protein_coding_gene FALSE TRUE AT4G32470.1|AT4G32470.2 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative similar to ubiquinol-cytochrome C reductase complex 14 kDa protein, putative [Arabidopsis thaliana] (TAIR:AT5G25450.1); similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein (CR14) (GB:P48502); contains InterPro domain Cytochrome bd ubiquinol oxidase, 14 kDa subunit; (InterPro:IPR003197)|similar to ubiquinol-cytochrome C reductase complex 14 kDa protein, putative [Arabidopsis thaliana] (TAIR:AT5G25450.1); similar to Os07g0205000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059146.1); similar to Ubiquinol-cytochrome c reductase complex 14 kDa protein (CR14) (GB:P48502); contains InterPro domain Cytochrome bd ubiquinol oxidase, 14 kDa subunit; (InterPro:IPR003197) 0.0364454374088941 0.501996719486606 0.628563769273324 1 0.901615402992107 22.1823256749256 0.0364454374088941 0.0381363752253758
AT4G10480_at 9.4773461306762 9.62691410590767 9.4524122649774 9.4122158217091 9.22344962406711 9.1249729192006 9.78386267282918 9.71100533463717 8.6949994083694 8.78264306473731 8.87179927385729 9.48675360421485 8.74750278547775 8.69755783066738 9.62551505431857 8.70613406567517 9.1238270910455 8.82164284363294 8.72844938857177 0.110515840523438 0.110595638918361 0.109995804704368 0.110390428044296 0.108782210677753 0.114068633334259 0.110582384559344 0.109985926378428 0.123633730294835 0.111591073962885 0.111015412390141 0.110614650825796 0.116937475554164 0.119528961092547 0.120836540117287 0.112239414956553 0.119026173784955 0.116346951599045 0.114137780145121 4 4 - 6478098 6478613 6478288 6477872 6479161 - gene protein_coding_gene FALSE TRUE AT4G10480.1|AT4G10480.2 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative Identical to Nascent polypeptide-associated complex subunit alpha-like protein 4 (NAC-alpha-like protein 4) (Alpha-NAC-like protein 4) [Arabidopsis Thaliana] (GB:Q9SZY1;GB:Q9ZSA6); similar to nascent polypeptide-associated complex (NAC) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G33040.1); similar to Nascent polypeptide-associated complex NAC; UBA-like [Medicago truncatula] (GB:ABE85161.1); contains InterPro domain Nascent polypeptide-associated complex NAC; (InterPro:IPR002715); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.0358958944028245 -0.50095707340845 0.629264766787404 1 0.901085067318089 18.3492501205026 -0.0358958944028245 0.0341721340984143
AT1G52870_at 11.8377931908089 11.9952304500074 12.2783769059605 12.2533805076819 12.3019341588903 11.9308715039506 12.5733519194994 12.4968997677131 12.2054568097632 12.296313073567 12.4279682216493 12.1135451784156 12.2429806039155 12.4653900555910 11.8586758322362 12.7655887474335 12.4172202322555 12.2493137465464 12.0960129065972 0.0830437716973615 0.0808155581150656 0.0816182852074058 0.0813310643923264 0.0811104479486196 0.0818875009983411 0.0840181965523794 0.0823633761688368 0.0873494138268708 0.0810009450826275 0.0808155581150656 0.0808155581150656 0.0831101537396663 0.0825354893150815 0.0861130818991864 0.0808155581150656 0.0876243813475383 0.0830239501190077 0.0818823136397552 1 1 + 19689895 19690952 19690541.727 19689415 19691575 + gene protein_coding_gene FALSE TRUE AT1G52870.1|AT1G52870.2 peroxisomal membrane protein-related similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT4G03410.2); similar to peroxisomal membrane protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF97329.1); similar to Os03g0583800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050563.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248)|similar to peroxisomal membrane protein-related [Arabidopsis thaliana] (TAIR:AT4G03410.1); similar to peroxisomal membrane protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD34004.1); similar to Os03g0583800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050563.1); contains InterPro domain Mpv17/PMP22; (InterPro:IPR007248) 0.0418231671966023 0.500319400631142 0.629694923933874 1 0.900760293373047 24.4669029291796 0.0418231671966023 0.0711302532297078
AT4G14410_at 8.20124079438667 8.37042016199834 8.37599863729921 8.3702874445257 8.8045236750561 8.5223984106519 8.68369054664924 8.31594735117082 8.35923199404106 8.82309449321825 8.73021087444893 8.58819503201781 8.45923126035596 8.5430664669906 8.38179103014455 8.7221661362682 8.70608230229546 8.62637469063715 8.70995837556254 0.118882265514734 0.118782860614000 0.121035642146946 0.119067487536266 0.125056295551619 0.126050499811836 0.122284028290477 0.12709486019991 0.135460844723576 0.124291712464076 0.122618110865030 0.118915549939311 0.127346809980799 0.124253189483241 0.123638039193924 0.118779420197335 0.126370417534094 0.126038935094318 0.129598899275647 4 0|4 /|+ 8301019 8301465 8301275.889 8299755 8301663 + gene protein_coding_gene FALSE TRUE AT4G14410.1|AT4G14410.2 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT3G23210.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE96711.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0446777157680873 0.497930963915079 0.631307424590566 1 0.899547286559651 17.0682640502600 0.0446777157680873 0.0853922625608183
AT1G69010_at 7.56494773268012 7.75415475963472 7.79292424665319 7.8740866345557 8.19011382514801 8.05306631238506 8.1735961765711 7.79668355754036 7.96450829988973 7.37523570578569 7.8630754448444 7.68997458025903 7.68173585483025 7.46353923537186 7.82212547424018 7.5908973535054 7.4703777981333 7.43132655713363 7.74756679678605 0.121060951099573 0.113411837259266 0.114648528234589 0.114257660977956 0.116004801422812 0.117759483093570 0.116289620246445 0.122471755389139 0.131827534567734 0.122491656646181 0.117890132706806 0.126907549058473 0.113420937250607 0.117476271920154 0.11379186097417 0.122453702626991 0.114329500580809 0.123677961286080 0.114902103084709 1 1 + 25946504 25947047 25946726.273 25945338 25947499 + gene protein_coding_gene FALSE TRUE AT1G69010.1 BIM2 (BES1-INTERACTING MYC-LIKE PROTEIN 2); DNA binding / transcription factor Identical to Putative transcription factor BIM2 (BES1-interacting Myc-like protein 2) (Transcription factor EN 125) (Basic helix-loop-helix protein 102) (bHLH 102) (AtbHLH102) (BIM2) [Arabidopsis Thaliana] (GB:Q9CAA4;GB:Q8LC47;GB:Q8RXV7); similar to BIM1 (BES1-interacting Myc-like protein 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G08130.1); similar to Os08g0490000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062109.1); similar to Putative bHLH family protein [Brassica oleracea] (GB:AAV25873.1); similar to Os09g0475400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063459.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0430317339407551 0.497657935651032 0.631491886607842 1 0.899408971769271 15.5611475580345 0.0430317339407551 0.0780151797642154
AT3G27820_at 10.6072461052995 10.8647637959696 11.1739657617854 11.1940864576288 11.1982190396156 10.8714712890704 11.4878309221399 11.3753809845630 10.7811917870031 11.2269957012512 10.9749972705991 10.6190648313944 10.9678086663383 11.0365740183075 10.4014568352264 11.1857322918717 11.0755201166633 10.8218359640458 10.9785675994770 0.117083742645912 0.109741652885279 0.113013720415861 0.114363597653080 0.109284066370595 0.112023175700768 0.119324322962640 0.110969693938349 0.121289489312281 0.110120678040596 0.112704303186681 0.108150367219034 0.116095761445157 0.113122956292828 0.112787533884754 0.109770328586902 0.116560179191309 0.107873856834008 0.110549150923342 3 3 + 10318577 10319075 10318811.909 10316351 10319293 + gene protein_coding_gene FALSE TRUE AT3G27820.1 ATMDAR4 (MONODEHYDROASCORBATE REDUCTASE 4); monodehydroascorbate reductase (NADH) Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 Identical to Probable monodehydroascorbate reductase, cytoplasmic isoform 2 (EC 1.6.5.4) (MDAR 2) [Arabidopsis Thaliana] (GB:Q9LK94); similar to ATMDAR1 (MONODEHYDROASCORBATE REDUCTASE 1), monodehydroascorbate reductase (NADH) [Arabidopsis thaliana] (TAIR:AT3G52880.1); similar to Os02g0707000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047874.1); similar to cytosolic monodehydroascorbate reductase [Oryza sativa (japonica cultivar-group)] (GB:BAA77214.1); similar to Os02g0707100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047875.1); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, class I; (InterPro:IPR001100); contains InterPro domain Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region; (InterPro:IPR001327); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) -0.0422905474529303 -0.49726467733471 0.631757625746462 1 0.899209874226355 22.0370999337838 -0.0422905474529303 0.0746604600651411
AT4G13830_at 10.5011431426529 10.7960546803706 10.6509087588813 10.6785896219558 11.2576662902914 10.8893162543253 10.9235507329890 10.9773000551183 10.8832658685588 10.8510668633477 10.9688712409275 10.3841678408530 10.8705848647504 10.7704964644396 10.0395385473797 11.0430561718146 10.5539062000928 10.7663852519379 10.7614656079825 0.122740305802504 0.120219728076214 0.129659911010509 0.126596522740466 0.120125601447905 0.129538011843668 0.118402651712298 0.121649075280386 0.130163763142769 0.122093697956096 0.118402651712298 0.118402651712298 0.122195511031534 0.130116043426119 0.129674143106117 0.118402651712298 0.128965815483575 0.124135361499751 0.123718380761834 4 4 + 8011556 8012533 8011938.727 8011420 8012776 + gene protein_coding_gene FALSE TRUE AT4G13830.1|AT4G13830.2 J20 (DNAJ-LIKE 20); heat shock protein binding DnaJ-like protein (J20); nuclear gene Identical to Chaperone protein dnaJ 20, chloroplast precursor (AtJ20) (AtDjC20) (ATJ20) [Arabidopsis Thaliana] (GB:Q9SDN0;GB:Q9SVN0); similar to DNAJ heat shock N-terminal domain-containing protein (J11) [Arabidopsis thaliana] (TAIR:AT4G36040.1); similar to DnaJ-like protein isoform [Solanum phureja] (GB:ABI34703.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0438494393038966 -0.496308067048124 0.632404278377632 1 0.898726181847856 21.5875954934418 -0.0438494393038966 0.0823256129563838
AT1G71410_at 7.98126361634476 7.63605804991989 6.99196226336677 7.24986424676123 7.8697043179581 7.78331585184684 7.10658687450434 6.99741846036232 7.61116135967636 7.02341445518157 7.23405864998432 7.56390554379136 6.9841791056661 7.61544422815105 7.64795914773841 7.18744549065558 7.01574304593577 7.06319765705152 7.10500136225745 0.153205346784991 0.149213955674566 0.163787407979576 0.158485069799921 0.162090274817050 0.156684068698222 0.170542130420951 0.157892153463670 0.154183384685791 0.160001078654698 0.150478691539237 0.151149787060742 0.160000732110991 0.150037208317741 0.153642016950096 0.153543073699428 0.157099712716593 0.159324139007558 0.149773373655099 1 1 - 26916762 26917295 26917011.091 26916388 26921374 - gene protein_coding_gene FALSE TRUE AT1G71410.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G22870.1); similar to protein kinase family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD61275.1); similar to Os01g0616100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043575.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain HEAT; (InterPro:IPR000357) 0.0429229013085231 0.495535503434123 0.632926762234179 1 0.898336187935965 14.7197803772965 0.0429229013085231 0.0783654931320074
AT1G47530_at 9.0140691718584 8.90169980140445 9.11195969404324 9.08322447406417 9.67829905498857 8.9412316323558 9.4227327790084 9.38842506505878 9.37125724542136 9.16543850222168 9.43798619171457 9.54420719526974 9.7384961753233 9.43180885565762 9.11668186922142 9.41912588752605 9.05249217231965 8.91712929070507 9.1930804669475 0.160443477223822 0.157930491983691 0.161006501960352 0.157393055700797 0.159913978284829 0.169835375835362 0.148655059550408 0.155988638161079 0.166601667328131 0.154067863332467 0.157995908617291 0.157502777361349 0.154905534466547 0.167479935288376 0.16644493837922 0.148655059550408 0.164982151192970 0.169696416264395 0.150056579843313 1 1|0 +|/ 17455606 17456202 17455974.4 17454120 17456861 + gene protein_coding_gene FALSE TRUE AT1G47530.1 ripening-responsive protein, putative similar to MATE efflux family protein [Arabidopsis thaliana] (TAIR:AT1G12950.1); similar to Os08g0550200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062445.1); similar to Multi antimicrobial extrusion protein MatE [Medicago truncatula] (GB:ABE85324.1); contains InterPro domain Multi antimicrobial extrusion protein MatE; (InterPro:IPR002528) 0.0554646130253849 0.495395234299274 0.633021649423252 1 0.898265440614598 18.4804550555547 0.0554646130253849 0.129258974944318
AT3G23820_at 11.3616559314038 11.7712208537941 10.9158967678351 11.2317076474744 11.7984667878987 11.5666041269606 12.0593897620687 12.3090806528924 12.1664089039792 12.2067792679724 12.8728025973751 12.7227296569375 12.4912855652891 12.7592878137251 12.4571020731055 12.6298775604668 11.9958351331186 12.5868598871885 12.1262722531921 0.0780820780638419 0.0753467241590458 0.0783363509787078 0.076040447375805 0.07479440183448 0.0779673109632568 0.0761244998278749 0.0763075267252477 0.07757820158015 0.0743725844683431 0.0735850965184043 0.07432345667335 0.073620436783544 0.076291807290266 0.0769527915700778 0.0750257730113343 0.0768804008796213 0.075640621362276 0.0752103854642998 3 3 + 8604570 8605006 8604774 8603451 8605469 + gene protein_coding_gene FALSE TRUE AT3G23820.1 GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); catalytic UDP-D-glucuronate 4-epimerase similar to GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3), catalytic [Arabidopsis thaliana] (TAIR:AT4G00110.1); similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to NAD-dependent epimerase/dehydratase; TonB box, N-terminal [Medicago truncatula] (GB:ABE89734.1); similar to putative NAD dependent epimerase [Trifolium pratense] (GB:BAE71216.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) -0.049591119989004 -0.494699617741312 0.633492315730466 1 0.897914871691837 23.9922324884319 -0.049591119989004 0.107180197470645
AT4G29900_at 9.01673435040454 8.86116378273054 9.18498614874595 9.17787169150394 9.31684531255338 8.67654849542103 9.06636613329658 8.71366240000996 8.84606410546398 8.52909899634487 8.29639273412752 8.29036898552227 8.40911549017386 8.3000868065291 7.85367306097267 8.25532943428105 8.32827696995925 8.28112244239173 8.23641281648346 0.137496990167632 0.137406269152994 0.144235576218616 0.141110059370059 0.137629890361569 0.142667271153142 0.144195958093078 0.136757832796896 0.139667518299838 0.144786959512708 0.140058745145394 0.137793829874206 0.137403439161624 0.136702033316413 0.141585342346256 0.137226915664402 0.140823139089962 0.138938664881959 0.141647233585396 4 0|4 /|- 14611534 14612333 14611959.833 14610889 14618781 - gene protein_coding_gene FALSE TRUE AT4G29900.1 ACA10 (autoinhibited Ca2+ -ATPase 10); calcium-transporting ATPase/ calmodulin binding one of the type IIB calcium pump isoforms. encodes an autoinhibited Ca(2+)-ATPase that contains an N-terminal calmodulin binding autoinhibitory domain. Identical to Putative calcium-transporting ATPase 10, plasma membrane-type (EC 3.6.3.8) (Ca(2+)-ATPase isoform 10) (ACA10) [Arabidopsis Thaliana] (GB:Q9SZR1;GB:Q9M0D3); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca(2+)-ATPase, putative (ACA12) [Arabidopsis thaliana] (TAIR:AT3G63380.1); similar to ACA9 (autoinhibited Ca2+ -ATPase 9), calcium-transporting ATPase/ calmodulin binding [Arabidopsis thaliana] (TAIR:AT3G21180.1); similar to ACA8 (AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G57110.2); similar to putative plasma membrane calcium-transporting ATPase [Physcomitrella patens] (GB:CAD21958.1); similar to putative calcium-transporting ATPase [Oryza sativa (japonica cultivar-group)] (GB:BAD27978.1); similar to putative calcium-transporting ATPase 8, plasma membrane-type [Oryza sativa (japonica cultivar-group)] (GB:BAD09972.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014) -0.055407493411874 -0.494678325764009 0.633506725033285 1 0.897904148504673 17.3962661459626 -0.055407493411874 0.129344065113196
AT1G72020_at 11.0910570348927 10.9957193677346 10.9184349002277 10.8585585836259 10.7853054834209 10.5364430311088 11.2276645363114 11.0993977155199 10.7136260779317 10.8677959849494 10.9778891610740 11.1568233639419 10.9758173932583 10.9945153400468 11.1070423890961 10.8621781627793 10.9826244393057 10.8521207526554 10.6256613380467 0.0758902484859791 0.075341194814066 0.0756669824966991 0.077137392852788 0.0740459650383884 0.0780098286987004 0.0740459650383884 0.0755323043498081 0.0864332745451068 0.0744230832258056 0.0761167165581812 0.0746000657714271 0.0773848175840169 0.0740459650383884 0.0782405572545595 0.0740459650383884 0.0765235252204225 0.080851375593386 0.0756646121970902 1 1|0 -|/ 27113199 27113965 27113407.3 27112953 27114093 - gene protein_coding_gene FALSE TRUE AT1G72020.1 similar to OSJNBa0084A10.18 [Oryza sativa (japonica cultivar-group)] (GB:CAE03043.3); similar to Os04g0432600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052832.1) -0.0379211278625446 -0.494657086068178 0.633521099119146 1 0.897893452079948 21.8012330027281 -0.0379211278625446 0.0522210453038942
AT3G21250_at 7.88167378211667 7.79519981250196 8.23637526106424 7.93769544316966 8.08773028069828 7.9679472938717 8.36816973275413 8.6148131719616 5.25818501300473 8.0068958750805 5.95978322248490 6.80364614209198 7.40242117184625 7.33177019215372 5.82212688442707 7.6436754715083 7.21994226213077 7.52877539147503 7.55213132461685 0.177665531631132 0.178294304365101 0.175240389322064 0.190259596546773 0.177591246682852 0.181291478149183 0.181638840519814 0.180294795019871 0.211276307785421 0.181242014348752 0.193621442761576 0.180627890797940 0.180512324177719 0.183181139459246 0.190852413846555 0.175240389322064 0.190088509060334 0.183889968173309 0.190098799629435 3 3|0 -|/ 7457720 7458425 7458037.111 7457439 7462740 - gene protein_coding_gene FALSE TRUE AT3G21250.1 ATMRP6 (Arabidopsis thaliana multidrug resistance-associated protein 6) member of MRP subfamily Identical to Multidrug resistance-associated protein 6 precursor (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 6) (ATP-energized glutathione S-conjugate pump 6) (MRP6) [Arabidopsis Thaliana] (GB:Q8LGU1;GB:Q9LU34); similar to ATMRP3 (Arabidopsis thaliana multidrug resistance-associated protein 3) [Arabidopsis thaliana] (TAIR:AT3G13080.1); similar to ATMRP5 (Arabidopsis thaliana multidrug resistance-associated protein 5) [Arabidopsis thaliana] (TAIR:AT1G04120.1); similar to ATMRP14 (Arabidopsis thaliana multidrug resistance-associated protein 14) [Arabidopsis thaliana] (TAIR:AT3G59140.1); similar to Multidrug resistance-associated protein 6 precursor (Glutathione S-conjugate-transporting ATPase 6) (ATP-ener (GB:Q8LGU1); similar to Cyclic peptide transporter [Medicago truncatula] (GB:ABE85499.1); similar to multidrug resistance associated protein 1 [Zea mays] (GB:AAO72315.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.041290100217612 -0.492474821029779 0.634998833833201 1 0.89679675267095 15.0627447621833 -0.041290100217612 0.0717432816136304
AT1G78900_at 11.2348440276349 11.2440417067247 11.4061104956400 11.2866068179481 11.2373638982753 10.9763647889003 11.7607242190238 11.7132957212203 11.3003576717478 11.6293187864979 11.8183539492259 11.6372106075299 11.7006379771023 11.6063131612302 11.6222744800142 11.4501440138855 11.2926607174136 11.5332427671122 11.2580221145707 0.0900322382548431 0.0850936433865378 0.0850936433865378 0.085910821151841 0.0859156195876398 0.091848398517511 0.0886682416777594 0.0903575318990832 0.098065160561864 0.0870649118609634 0.0884835424853938 0.0856321420670355 0.0861975159500899 0.0912611297940159 0.0865640751681651 0.0850936433865378 0.0905322521639794 0.0894531709702863 0.0850936433865378 1 1|0 +|/ 29668111 29669427 29668901 29665077 29669843 + gene protein_coding_gene FALSE TRUE AT1G78900.1|AT1G78900.2 VHA-A; ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology. Identical to Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14) (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V-ATPase 69 kDa subunit) [Arabidopsis Thaliana] (GB:O23654); similar to ATP synthase beta chain 1, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08670.1); similar to ATP synthase beta chain 2, mitochondrial [Arabidopsis thaliana] (TAIR:AT5G08690.1); similar to ATP synthase beta chain, mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT5G08680.1); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V-ATPase 69 kDa subunit) (GB:P09469); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V-ATPase 69 kDa subunit) (Tonoplast ATPase 70 kDa subunit) (BN59) (GB:Q39291); similar to Vacuolar ATP synthase catalytic subunit A (V-ATPase subunit A) (Vacuolar proton pump subunit alpha) (V-ATPase 69 kDa subunit) (GB:Q9SM09); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; (InterPro:IPR004100); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding; (InterPro:IPR000194); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793); contains InterPro domain ATPase, V1 complex, subunit A; (InterPro:IPR005725) -0.0374548667714496 -0.492367568957079 0.635071504861132 1 0.896742970571882 22.8466710761516 -0.0374548667714496 0.0503751763717167
AT2G29400_at 10.1993867716452 10.2378467340097 9.87021998209875 9.96494860433401 10.5450258901925 10.1797733411014 8.95143640583527 8.91513490642722 9.9419182299509 9.08325935566816 8.93023173941084 8.81521654764692 9.07145497357093 8.91500803871128 8.71026797730676 9.11245952929723 8.81067388076575 8.86278448946029 9.61813153966805 0.126397205829225 0.126000216415025 0.132393178423900 0.125984452502663 0.125883094029582 0.133309065591302 0.125957904504216 0.127208899313807 0.131889499354537 0.130225169391746 0.124851063863532 0.126405720974482 0.129326286597528 0.139067774573148 0.127079842098408 0.128664128999705 0.136596907354824 0.133513606769475 0.124129549452650 2 2 - 12620897 12621467 12621223.273 12620158 12622476 - gene protein_coding_gene FALSE TRUE AT2G29400.1 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1); protein phosphatase type 1 Type 1 protein phosphatase, expressed in roots, rosettes and flowers Identical to Serine/threonine-protein phosphatase PP1 isozyme 1 (EC 3.1.3.16) (TOPP1) [Arabidopsis Thaliana] (GB:P30366); similar to TOPP2 (Type one serine/threonine protein phosphatase 2), protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G59160.3); similar to Serine/threonine-protein phosphatase PP1 (GB:P48487); contains InterPro domain Serine/threonine-specific protein phosphatase and bis(5-nucleosyl)-tetraphosphatase; (InterPro:IPR006186); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.0401084057277328 -0.491883186648474 0.635399760856854 1 0.896500211807952 19.0836125071807 -0.0401084057277328 0.0659381199932133
AT2G04790_at 4.19418987419373 4.62064340064419 4.83157044939378 4.97407941731926 5.44578595977929 4.79900006337317 6.25258203128629 6.19087125493197 5.56454594053217 5.44887663277945 6.21070137605257 5.95864562506519 5.60545085314612 6.36600546137797 5.19024000371756 6.68303087889805 6.16317550567741 5.79925946699947 5.7292617344678 0.271421774434747 0.282380099141751 0.258932062824554 0.246966534341093 0.244648607946726 0.266882807449008 0.249951484824768 0.248976935094138 0.271694576691661 0.250167417915060 0.251831320611519 0.249359013901196 0.244648607946726 0.244648607946726 0.255149674980929 0.246918596657059 0.244648607946726 0.26445533100786 0.249553531844922 2 2|0 +|/ 1679544 1680138 1679692.889 1679513 1680540 + gene protein_coding_gene FALSE TRUE AT2G04790.1|AT2G04790.2|AT2G04790.3|AT2G04790.4 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79920.1) 0.0571031046546601 0.491787437047909 0.635464658478550 1 0.896452251405154 10.9525695141785 0.0571031046546601 0.136736362117960
AT3G61310_at 7.14657966483091 7.42829889647307 7.18587373965547 7.23839767869348 7.73192920468025 7.78526042958755 7.96800296169194 7.6906750130708 7.58703491104798 7.19634813767315 7.73329314067718 7.32400500737481 7.68011939650802 7.71484271285918 7.29090783456874 7.50187302134309 7.39103088410898 7.54636250075732 7.32132968365538 0.183464996474454 0.164217463189587 0.19535319571867 0.171241709974262 0.162281271279898 0.181725722889565 0.162321736283701 0.171895125336614 0.172330306499917 0.16348528109366 0.164059123854810 0.162501864705895 0.161608597453837 0.168878472529603 0.168288026219016 0.159044649478441 0.179687409922278 0.166475371637187 0.162552564965357 3 3 - 22701790 22702596 22702149.636 22701571 22703797 - gene protein_coding_gene FALSE TRUE AT3G61310.1 DNA-binding family protein similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT2G45850.2); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE82932.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.0407714319766663 0.491292415871247 0.635800229303998 1 0.8962044383114 14.9673981434522 0.0407714319766663 0.0696272488656275
AT1G36050_at 8.0333288141226 8.05408041763712 7.79842447091704 7.41968347720413 8.70239014884192 8.01849534693461 7.68704180530907 7.1590887158427 7.79115458307884 7.29399747923227 7.63686773783555 7.51082753529189 6.92942853376599 7.42582630785108 7.57637739478122 6.49262566790955 6.55990436115757 6.8956722390685 7.44113571375935 0.202249762990878 0.199172657726093 0.203124686203408 0.201429319781947 0.203917974123983 0.216921138456786 0.195511899510989 0.198695230914681 0.207844490950778 0.199929087872654 0.205785144007847 0.198219253303541 0.207681333525440 0.204732329555637 0.198046213235854 0.197135902272339 0.229012291431271 0.208327600719653 0.201802968307419 1 1|0 +|/ 13453237 13454176 13453665.444 13451416 13454467 + gene protein_coding_gene FALSE TRUE AT1G36050.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G22200.1); similar to Serolo (GB:ABF95668.1); similar to Os04g0455900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052965.1); contains InterPro domain Protein of unknown function DUF1692; (InterPro:IPR012936) -0.0644789735346318 -0.49056203122187 0.63629551324034 1 0.89583922835895 15.1776685567167 -0.0644789735346318 0.163288968058256
AT3G48170_at 9.25160498975795 9.2712051219125 9.41685724833221 9.17330681581346 9.1895435368848 8.78483133440886 8.88610978025583 8.86594125801725 8.58187017315735 8.99993639293148 8.82294347191494 8.8844662930267 8.69072544553773 8.9841675299815 8.59324339035237 8.75346372924803 8.47555273680509 8.65263645015638 8.57244690005679 0.124531558046092 0.116253131152377 0.117329106280031 0.119737487784901 0.117781787656161 0.124664081308559 0.119095965750154 0.118563051839752 0.141631529096173 0.119630738124115 0.120633926269497 0.119624987117378 0.117302196777700 0.126037613367935 0.123706917318919 0.119871125629947 0.124602672618563 0.117959122038895 0.116028115342067 3 3|0 -|/ 17797283 17798324 17797842.444 17797125 17800993 - gene protein_coding_gene FALSE TRUE AT3G48170.1 ALDH10A9 (Aldehyde dehydrogenase 10A9); 3-chloroallyl aldehyde dehydrogenase Arabidopsis thaliana putative betaine aldehyde dehydrogenase Identical to Betaine aldehyde dehydrogenase 2, mitochondrial precursor (EC 1.2.1.8) (BADH) (Aldehyde dehydrogenase 10A9) (ALDH10A9) [Arabidopsis Thaliana] (GB:Q9STS1;GB:Q42237); similar to ALDH10A8 (Aldehyde dehydrogenase 10A8), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G74920.1); similar to betaine-aldehyde dehydrogenase [Chorispora bungeana] (GB:AAV67891.2); similar to betaine-aldehyde dehydrogenase [Gossypium hirsutum] (GB:AAR23816.2); similar to betaine aldehyde dehydrogenase [Brassica napus] (GB:AAQ55493.1); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.0432424192682948 0.490518707283025 0.636324897871172 1 0.895817581402331 17.8300421954694 0.0432424192682948 0.0818860793482032
AT4G34870_at 10.2372300836957 10.553213844907 10.1005961628692 10.3086599434141 10.1923971147445 9.81668554285213 10.6677764166297 10.8409691538517 10.1008831251138 10.1022334357136 10.3529825062198 10.6906580883425 10.3044197813284 10.3137940417886 10.4142511078641 10.4620009303445 10.4021594586588 10.0847481188428 9.80052930201626 0.115124092851326 0.103619630166542 0.11084917955747 0.110309796592157 0.107064204101364 0.113778152962192 0.104871666218419 0.105906683586421 0.116184381467139 0.106448678344969 0.106906375610347 0.101704996984235 0.102593994687739 0.108403072307075 0.106721257725444 0.101704996984235 0.111075938277812 0.111990935980084 0.107513279714243 4 4 + 16614478 16614930 16614638.818 16614332 16615318 + gene protein_coding_gene FALSE TRUE AT4G34870.1 ROC5 (ROTAMASE CYP 5); peptidyl-prolyl cis-trans isomerase belongs to cyclophilin family Identical to Peptidyl-prolyl cis-trans isomerase CYP18-4 (EC 5.2.1.8) (PPIase CYP18-4) (Rotamase cyclophilin-5) (Cyclophilin of 18 kDa 4) (Cyclophilin-1) (CYP18-4) [Arabidopsis Thaliana] (GB:Q42406); similar to ROC3 (rotamase CyP 3), peptidyl-prolyl cis-trans isomerase [Arabidopsis thaliana] (TAIR:AT2G16600.1); similar to Peptidyl-prolyl cis-trans isomerase (PPIase) (Rotamase) (Cyclophilin) (Cyclosporin A-binding protein) (GB:Q39613); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.0466506086209630 -0.490089308115666 0.63661617626273 1 0.895603127875017 20.5293620537646 -0.0466506086209630 0.097017349869216
AT1G23870_at 5.9880958476244 5.91542135050876 5.7510959847875 5.64258776251786 6.4224671654396 6.81564360490149 4.85722392511798 4.89505504831311 5.34692368354764 5.23465481894146 4.86273356437229 4.17849883100252 5.40703975687914 4.72217044733271 3.98268301497489 5.47396541831688 4.69037945427039 5.08202095267601 5.80379680940398 0.208452650725768 0.212213082139605 0.216867735326688 0.210649230056194 0.21216012359081 0.205289174129965 0.207519498941694 0.20509691280943 0.207306015403066 0.207200838209571 0.205189000412024 0.202892203232538 0.208948317027432 0.205424671582048 0.208098096225006 0.205999848787736 0.222812198989083 0.201833542876755 0.207735562865779 1 1 + 8434783 8435453 8435095.909 8432168 8435645 + gene protein_coding_gene FALSE TRUE AT1G23870.1 ATTPS9 (Arabidopsis thaliana trehalose-phosphatase/synthase 9); transferase, transferring glycosyl groups / trehalose-phosphatase Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. similar to ATTPS10 (Arabidopsis thaliana trehalose phosphatase/synthase 10), transferase, transferring glycosyl groups / trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G60140.1); similar to ATTPS6 (Arabidopsis thaliana trehalose phosphatase/synthase 6), trehalose-phosphatase [Arabidopsis thaliana] (TAIR:AT1G68020.2); similar to ATTPS8 (Arabidopsis thaliana trehalose phosphatase/synthase 8), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G70290.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65494.1); similar to trehalose-6-phosphate synthase [Ginkgo biloba] (GB:AAX16014.1); similar to trehalose 6-phosphate synthase [Gossypium hirsutum] (GB:AAV65495.1); contains InterPro domain Trehalose-phosphatase; (InterPro:IPR003337); contains InterPro domain HAD-superfamily hydrolase subfamily IIB; (InterPro:IPR006379); contains InterPro domain Glycosyl transferase, family 20; (InterPro:IPR001830) 0.0410721229338125 0.489276639072753 0.637167624256635 1 0.895197742748779 10.9168129364559 0.0410721229338125 0.0719945928507925
AT4G24660_at 4.75679403215261 4.96780251759243 4.86809785081428 4.70002351788382 6.04657079888433 5.87377784120978 5.95478273547442 5.67910282250909 4.89697829199358 5.26924274223665 5.40853940367496 4.61717227123082 5.03949776571624 4.75841264095462 5.3236177542495 4.73238746704209 5.48031052040445 4.54989798541731 5.14517807034998 0.217599096243271 0.214941112213411 0.213596496728708 0.220089995003494 0.229501064092805 0.226769460802264 0.223700277762302 0.222745057973832 0.220722560538027 0.213388560992402 0.216822517705038 0.214480693539394 0.230414390075910 0.221844481890803 0.213388799223318 0.211731163808633 0.214902869254149 0.211731163808633 0.211731163808633 4 4 - 12724937 12725427 12725201.727 12724753 12725647 - gene protein_coding_gene FALSE TRUE AT4G24660.1 ATHB22/MEE68 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 22, maternal effect embryo arrest 68); DNA binding / transcription factor Identical to ZF-HD homeobox protein At4g24660 (AtHB-22) [Arabidopsis Thaliana] (GB:Q9SB61); similar to ATHB25/ZFHD2 (ZINC FINGER HOMEODOMAIN 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G65410.1); similar to ZF-HD homeobox protein [Flaveria bidentis] (GB:CAC34447.1); contains InterPro domain Homeobox domain, ZF-HD class; (InterPro:IPR006455); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain ZF-HD homeobox protein Cys/His-rich dimerisation region; (InterPro:IPR006456) -0.0412866250872834 -0.489089749993781 0.637294474224149 1 0.895104606077615 10.4021336033716 -0.0412866250872834 0.0731410132742538
AT2G38740_at 8.44634982679912 8.5236387392615 9.09261844887875 9.04756722684384 8.90769168262565 8.55285361466899 9.67291907613854 9.40029182497074 9.0495144658833 8.95812489507181 8.950501325938 8.86251800472774 9.13891532181063 9.12629806103723 8.45386585088 9.4026365069235 9.16079587879779 8.98830932037905 8.94638929488986 0.121130915964719 0.117337505287186 0.117337505287186 0.119831307353434 0.117799334170245 0.129945036247821 0.124517089663983 0.117337505287186 0.125221981426876 0.121318008037007 0.127790768588167 0.118799308451297 0.117337505287186 0.127872432790143 0.125537302432483 0.117893032875152 0.119290013554632 0.117942261732080 0.118939000969782 2 2 - 16201743 16202315 16201958.182 16201405 16203191 - gene protein_coding_gene FALSE TRUE AT2G38740.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G56500.1); similar to Os09g0407700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063137.1); similar to beta-phosphoglucomutase-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD36245.1); contains InterPro domain HAD-superfamily hydrolase subfamily IA, variant 3; (InterPro:IPR006402); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) -0.0424066541707071 -0.488103514353453 0.637964085299714 1 0.894613667590039 17.9530694312368 -0.0424066541707071 0.0789703745742133
AT1G63110_at 6.84484528105831 6.67867742700931 6.35971974210798 6.32216864450587 7.27768378949804 6.49447702172384 6.87310953226748 6.81719334535990 5.97842807389276 5.9851272960421 6.57226695094717 6.15562542794938 6.48810621310149 6.3729435022884 6.17764694982344 6.0294202922492 5.49324413147489 5.9866131022183 6.28879874080796 0.220300717447184 0.223397780052612 0.222493229073719 0.231039762867519 0.226192845458824 0.232736536527305 0.219604083615092 0.225410374080202 0.234259541153376 0.218861990325898 0.220211743632229 0.219578288059996 0.218138019178318 0.228771119878806 0.221774121640829 0.229900670059633 0.241410044557171 0.226952763105938 0.219549470876003 1 1|0 +|/ 23409993 23411109 23410489 23408486 23411717 + gene protein_coding_gene FALSE TRUE AT1G63110.1|AT1G63110.2|AT1G63110.3 cell division cycle protein-related similar to cell division cycle protein-related [Arabidopsis thaliana] (TAIR:AT1G12730.1); similar to putative transamidase complex subunit PIG-U [Oryza sativa (japonica cultivar-group)] (GB:BAD81713.1); similar to Os02g0688900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047781.1); contains InterPro domain GPI transamidase subunit PIG-U; (InterPro:IPR009600)|similar to cell division cycle protein-related [Arabidopsis thaliana] (TAIR:AT1G12730.2); similar to putative transamidase complex subunit PIG-U [Oryza sativa (japonica cultivar-group)] (GB:BAD81713.1); similar to Os02g0688900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047781.1); contains InterPro domain GPI transamidase subunit PIG-U; (InterPro:IPR009600) -0.0572894063112767 -0.487938256254001 0.638076322691442 1 0.894531494964285 12.8302850270267 -0.0572894063112767 0.139043935741245
AT2G33590_at 6.6314497805502 6.88384765985802 7.60888480090118 7.26779356329504 7.60079313768672 6.45421761049014 8.33591796305612 8.14656869763148 6.41640482529721 6.80033474415644 7.14659491075318 6.45695475601779 6.73003635569408 6.9716508778411 6.11023247848363 6.91116384380739 6.66722937722992 6.55127922631441 6.53788748743805 0.220229450536099 0.223157984215494 0.226730826540815 0.235516903922491 0.220229450536099 0.227519807267863 0.220830569024616 0.225690715897118 0.22433421352192 0.227923231394886 0.220870222544452 0.225792701459578 0.220839074957695 0.225698645924740 0.230242627672321 0.225081270566228 0.234980912097377 0.232678128354029 0.228961602965114 2 2|0 +|/ 14232452 14233062 14232803.8 14231344 14233678 + gene protein_coding_gene FALSE TRUE AT2G33590.1 cinnamoyl-CoA reductase family similar to cinnamoyl-CoA reductase family [Arabidopsis thaliana] (TAIR:AT2G33600.1); similar to Os06g0623600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058105.1); similar to Os06g0623300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058104.1); similar to cinnamoyl CoA reductase 2 [Solanum tuberosum] (GB:AAN71762.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) -0.079128352271781 -0.486936216899574 0.638757082822094 1 0.894033803810285 14.0051933586327 -0.079128352271781 0.214094324373639
AT3G15880_at 8.81186375110288 8.89054830026035 9.16716459151108 9.19893850542738 9.33080727133403 9.13913231133306 9.32833177621653 9.22691817477056 9.38478208572456 9.28710049825679 9.25871597718529 9.10886680903059 9.27891536270418 9.24905732190965 8.74885013249172 9.3033419215517 9.00868126351911 9.31400274404252 9.4520081403733 0.112220164647244 0.105647788683294 0.112483094133535 0.102128168125852 0.105003197276187 0.106315909600439 0.113026407755218 0.109272857985847 0.113455901345671 0.106957704171264 0.102627005523088 0.107072014502493 0.101469164623686 0.113920685961339 0.116550351923498 0.101499236047753 0.11255376068833 0.110688375079697 0.106350166551054 3 3|0 -|/ 5364803 5365707 5365093.7 5364087 5372295 - gene protein_coding_gene FALSE TRUE AT3G15880.1|AT3G15880.2 TPR4/WSIP2 (TOPLESS-RELATED 4); protein binding|TPR4/WSIP2 (TOPLESS-RELATED 4) similar to TPR1 (TOPLESS-RELATED 1) [Arabidopsis thaliana] (TAIR:AT1G80490.2); similar to TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G15750.4); similar to WD-40 repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC99788.1); similar to CTV.2 [Poncirus trifoliata] (GB:AAN62336.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594)|similar to TPR1 (TOPLESS-RELATED 1) [Arabidopsis thaliana] (TAIR:AT1G80490.2); similar to TPL/WSIP1 (WUS-INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT1G15750.4); similar to WD-40 repeat protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC99788.1); similar to CTV.2 [Poncirus trifoliata] (GB:AAN62336.1); similar to Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] (GB:ABE79981.1); contains InterPro domain CTLH, C-terminal to LisH motif; (InterPro:IPR006595); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594); contains InterPro domain Nitrous oxide reductase, N-terminal; (InterPro:IPR011045) -0.0356155652916963 -0.486851497748998 0.63881465545054 1 0.893991769816127 18.4034301767474 -0.0356155652916963 0.0402979062863989
AT3G55960_at 9.38200986390032 9.49999257505755 9.59886548007906 9.82648623561324 9.98109984465447 9.91311617100015 9.70540928006993 9.64679259743396 10.0855343106121 9.5343867930549 9.41648255793269 9.1165238735789 9.64353441276878 9.34251576828551 9.16950466151485 9.60426433588305 9.66501367151863 9.59955764007579 9.74697243120302 0.0870244613173378 0.0860493325048597 0.0932180617626921 0.0852065544267327 0.0873827309766782 0.089647182509689 0.0935982677280809 0.0899036621706182 0.0915585643658434 0.0852065544267327 0.0852065544267327 0.0898579003183946 0.0884182985050046 0.0936876751635359 0.0870842453256083 0.087183900635088 0.0951558327941632 0.0868801603879168 0.0866948474413472 3 3|0 -|/ 20771821 20772721 20772192.6 20771436 20774012 - gene protein_coding_gene FALSE TRUE AT3G55960.1 NLI interacting factor (NIF) family protein similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT1G29780.1); similar to hypothetical protein 56B23-g1 [Lycopersicon esculentum] (GB:AAW22871.1); similar to Os05g0466800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055788.1); similar to Os01g0833100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044710.1); contains InterPro domain Dullard-like phosphatase domain; (InterPro:IPR011948); contains InterPro domain NLI interacting factor; (InterPro:IPR004274) -0.0364745213536437 -0.486082366325893 0.639337452612807 1 0.893610475026126 19.3110410693851 -0.0364745213536437 0.0470087390551338
AT1G31910_at 9.7181329555792 9.8337516226666 9.9968002592436 9.90407853352604 10.0653476306719 9.48296971825344 9.94404136605248 9.5994526867881 9.50778303556438 9.65688204184614 9.78974134088992 9.74147620256295 9.6849810762172 9.51923770107954 9.7111082460124 9.71562037927527 9.62787034858138 9.45512528298389 9.75653612003986 0.115507573643187 0.117866045688659 0.120920936818119 0.116618512670765 0.120908532170181 0.125893435408155 0.114237209637736 0.120037713671370 0.126579844813925 0.118626966915443 0.125712322334462 0.115502292986367 0.118543882942705 0.127610480935736 0.120460148429549 0.113364697802592 0.122767286110159 0.114559044005128 0.117197708661338 1 1|0 +|/ 11460921 11461600 11461355.1 11457106 11461805 + gene protein_coding_gene FALSE TRUE AT1G31910.1 GHMP kinase family protein similar to phosphomevalonate kinase [Hevea brasiliensis] (GB:AAL18926.1); contains InterPro domain GHMP kinase, C terminal; (InterPro:IPR013750); contains InterPro domain Phosphomevalonate kinase Erg8; (InterPro:IPR005916); contains InterPro domain GHMP kinase; (InterPro:IPR006204) 0.0518495253511819 0.485141639832826 0.63997717634249 1 0.893144884394368 19.4660945822729 0.0518495253511819 0.119879599228725
AT1G62560_at 9.6617558660129 9.85976947557236 9.32868167986168 9.14853557619246 9.60273444452374 9.27182144864642 10.1643669187996 10.1948270029168 8.1084142879237 10.3787702778307 10.3060823133698 10.2666538435391 10.1155548433038 10.3064996098711 9.47409263282388 9.92157764035642 9.99103944603994 10.2415562551298 9.60350171923907 0.142603604632372 0.141774662790552 0.146107913262068 0.146251061186561 0.13818594905948 0.138296184091423 0.142878699768485 0.144061546690593 0.152839918829683 0.140894453604294 0.135951254417798 0.135951254417798 0.137330581973952 0.135951254417798 0.144865309110871 0.136231398255652 0.145055982696186 0.136677252874236 0.14251488997182 1 1 + 23165263 23166177 23165785.545 23163488 23166314 + gene protein_coding_gene FALSE TRUE AT1G62560.1 flavin-containing monooxygenase family protein / FMO family protein similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62570.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G62540.1); similar to flavin-containing monooxygenase family protein / FMO family protein [Arabidopsis thaliana] (TAIR:AT1G65860.1); similar to FMO-like protein [Thellun (GB:ABJ98059.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Flavin-containing monooxygenase FMO; (InterPro:IPR000960); contains InterPro domain FAD-dependent pyridine nucleotide-disulphide oxidoreductase; (InterPro:IPR013027) 0.0410417247685393 0.48451249995262 0.640405188752325 1 0.892833980416063 19.3747836355918 0.0410417247685393 0.0738465507074549
AT2G39570_at 9.6322120321167 9.69941949755072 10.2055899242907 10.1608966002174 10.8134724737266 10.6108973087919 9.88706815757943 9.5234086788696 10.2952092219225 9.94816924079537 9.6088719408095 9.54236401884162 9.85130243348007 9.61309308036271 8.57010337259234 9.98619228075223 10.1480839774171 9.57758802446522 10.6342770242134 0.0956462752977658 0.0892836942275295 0.093730130472098 0.0915147280714769 0.0915987793742166 0.0921310290710068 0.0902441928009564 0.0927408365424116 0.0941946737383615 0.0913666228869719 0.0908852282577395 0.0908284304902597 0.0946831512987067 0.092559475966931 0.104964423913090 0.0892836942275295 0.0912389998762213 0.0968478889544083 0.0905840886146915 2 2|0 +|/ 16516028 16516757 16516428 16514974 16517276 + gene protein_coding_gene FALSE TRUE AT2G39570.1 ACT domain-containing protein similar to ACT domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G36840.1); similar to Os09g0570900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063990.1); similar to hypothetical protein MtrDRAFT_AC146757g1v2 [Medicago truncatula] (GB:ABE90622.1); similar to Os05g0113000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054453.1); contains InterPro domain Amino acid-binding ACT; (InterPro:IPR002912) 0.0409175236702513 0.484151311934712 0.640650974064596 1 0.892655662780482 20.0189964441765 0.0409175236702513 0.0733799221287431
AT4G10340_at 14.1958225588306 14.3357612364026 14.3064057554265 14.2768665990381 14.2567805009273 14.2527313311103 14.4798189979909 14.5648867949612 14.9510079341781 14.9692572751041 15.1354579977122 15.0985553277521 14.9835312039124 14.9187531135261 14.9323609263167 14.9101086210686 14.6646066918772 15.1338218878182 14.8380510668523 0.0487860911945575 0.048752864519785 0.0502077392872051 0.0528245906739613 0.0491855167892603 0.0522448238916947 0.0494945452647515 0.0490488278804485 0.0521291085669808 0.048752864519785 0.0507359428681888 0.0492826172611509 0.048752864519785 0.0495268579540248 0.0506274700144094 0.048752864519785 0.0578294921435756 0.0517844774351547 0.048752864519785 4 4|0 +|/ 6408841 6409453 6409160.9 6408012 6409673 + gene protein_coding_gene FALSE TRUE AT4G10340.1 LHCB5 (LIGHT HARVESTING COMPLEX OF PHOTOSYSTEM II 5); chlorophyll binding photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus Identical to Chlorophyll a-b binding protein CP26, chloroplast precursor (Light- harvesting complex II protein 5) (LHCB5) (LHCIIc) (LHCB5) [Arabidopsis Thaliana] (GB:Q9XF89;GB:Q8LAB1); similar to LHB1B1 (Photosystem II light harvesting complex gene 1.4), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT2G34430.1); similar to chlorophyll a/b-binding protein CP26 in PS II [Brassica juncea] (GB:CAA65042.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.0340828189421809 -0.483288509813073 0.641238292786864 1 0.892230206692369 29.2794283368157 -0.0340828189421809 0.0288063619922055
ATCG00670_at 11.6315709809734 12.4788005716257 11.9094106744657 12.2160941514320 11.6050885800523 11.6467178372470 12.0066840690195 12.4060734833275 12.6266314051217 12.8292322416681 13.0352797183377 13.2506392241010 12.8209202569915 12.8803775207082 12.7853461268623 12.8746393979052 12.438658386497 12.6320750876602 12.5977601966787 0.117125120444022 0.108757503602432 0.11780688564694 0.115761546039172 0.112238342155082 0.123856087376785 0.111050870802706 0.111657067865487 0.119504242549241 0.108596281864657 0.108606785543365 0.112860582542148 0.110238540530441 0.108628099682121 0.116011137071534 0.109865618564649 0.123237761048959 0.114915759082649 0.109264943299340 C C|0 -|/ 69930 71837 70619.4 69910 71882 - gene protein_coding_gene FALSE TRUE ATCG00670.1 Encodes the only ClpP (caseinolytic protease) encoded within the plastid genome. Contains a highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). Part of the 350 kDa chloroplast Clp complex. The name reflects nomenclature described in Adam et. al (2001). Identical to ATP-dependent Clp protease proteolytic subunit (EC 3.4.21.92) (Endopeptidase Clp) (clpP) [Arabidopsis Thaliana] (GB:P56772;GB:Q9XQZ9); similar to CLPR2 (Clp protease proteolytic subunit 2), endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G12410.1); similar to ATP-dependent protease catalytic subunit [Forsythia europaea] (GB:ABG74755.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) -0.0656268908552828 -0.483063256964144 0.64139166875069 1 0.892119250058808 24.7496966665374 -0.0656268908552828 0.170711003865265
AT2G48100_at 7.65428470858549 7.59498307209881 7.9574648002719 7.70334249949648 8.35963873760349 7.89890315308458 7.71163904520126 7.81581933396966 7.49437044868278 7.5166837251773 7.414768921434 7.28477234792136 7.37735437741695 7.47082101679004 7.41584706407033 7.79337987042158 7.17308831527805 7.38502405029512 7.81827862486467 0.205952940479747 0.201481382485758 0.207628882624419 0.203571702945896 0.203661174194618 0.212235360987030 0.204878989237409 0.200899774084608 0.224585470063006 0.19858301098974 0.202577713699103 0.19858301098974 0.207284443203487 0.210177549181813 0.206757693789495 0.202653219111451 0.205141123380942 0.200262516791664 0.19858301098974 2 2|0 +|/ 19679085 19679869 19679495.286 19677571 19680362 + gene protein_coding_gene FALSE TRUE AT2G48100.1|AT2G48100.2|AT2G48100.3|AT2G48100.4 exonuclease family protein|exonuclease similar to exonuclease family protein [Arabidopsis thaliana] (TAIR:AT5G40310.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16921.1); similar to Os02g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047886.1); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520)|similar to exonuclease [Arabidopsis thaliana] (TAIR:AT3G27970.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAB16921.1); similar to Os02g0709000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047886.1); contains InterPro domain Exonuclease; (InterPro:IPR006055); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087); contains InterPro domain Exonuclease, RNase T and DNA polymerase III; (InterPro:IPR013520) 0.0451300767644136 0.482963758156068 0.641459423849634 1 0.892070253759404 15.3490892163031 0.0451300767644136 0.0933895131987137
AT1G76900_at 9.0127496695534 9.18986555819324 9.31301039721407 9.35468841000612 9.61373474162808 9.45787904445593 9.41520143622301 9.46006193137062 9.12652924600627 8.94001709671565 9.0282934683378 8.92858303697554 8.65136089580305 8.92773569796408 8.77550874646256 8.91550788017794 8.93419652918406 8.83428255417238 8.84011944781261 0.135315194738744 0.139141469583033 0.146082088668261 0.137953898410736 0.135811475236354 0.143435456736248 0.142474181050852 0.134237066779474 0.142463898696648 0.141367324635767 0.136018856856661 0.134957656085669 0.141423029433184 0.143097800988698 0.146983958729616 0.133619403670956 0.139428024018551 0.138853475099108 0.142063431361402 1 1 + 28888693 28889217 28888907.455 28886708 28889460 + gene protein_coding_gene FALSE TRUE AT1G76900.1|AT1G76900.2 AtTLP1 (TUBBY LIKE PROTEIN 1); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP10 (TUBBY LIKE PROTEIN 10), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G25280.1); similar to Os05g0437900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055656.1); similar to Os08g0103300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060771.1); similar to CAA303719.1 protein [Oryza sativa] (GB:CAB53492.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) 0.0354517518904087 0.481297878042721 0.642594354289361 1 0.891251335949313 18.2738099975703 0.0354517518904087 0.0421808299337045
AT2G45740_at 10.537785842645 10.6780993962623 10.8899052556233 10.8632832997539 11.0810981271079 10.8001720579583 11.1152171241911 11.2416609057451 10.5841434574097 10.8204953289569 10.7260974497898 10.5039326674087 10.9933038630295 10.9444124369069 10.5154744828387 10.9513525590797 10.6244314291890 10.8353538727311 10.6994583886556 0.081170675601351 0.0758886433301537 0.0801901041872625 0.0763266080952579 0.0769910118523558 0.0803519160021508 0.080235503261404 0.0747287381811759 0.0870062094178966 0.0804048985339948 0.0772039394511623 0.07626221446048 0.0777096298306597 0.0828066289168625 0.078899294462038 0.0754714049326518 0.0835962857103573 0.077650527054524 0.0795703337506366 2 2|0 +|/ 18847055 18847989 18847550.3 18846660 18848474 + gene protein_coding_gene FALSE TRUE AT2G45740.1|AT2G45740.2|AT2G45740.3 peroxisomal biogenesis factor 11 family protein / PEX11 family protein|PEX11D member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. similar to PEX11E [Arabidopsis thaliana] (TAIR:AT3G61070.2); similar to unknown [Lycopersicon esculentum] (GB:AAF75750.1); contains InterPro domain Peroxisomal biogenesis factor 11; (InterPro:IPR008733) 0.0379264940071458 0.480785263915492 0.642943787513133 1 0.890999880505835 21.6324830362254 0.0379264940071458 0.0587632352771725
AFFX-CreX-5_at 12.4730248359011 12.2136478485301 12.7955182805544 12.5904073598765 12.0997316113001 12.3232096798664 12.1972255534427 12.3871155093053 1.08932745610519 0.239366278479957 0.556298885162723 0.394229995485224 0.579278097716503 0.636707344044594 0.758995197687917 0.351185305015759 0.686748504777023 1.02102612062201 0.69667969606572 0.199906297062880 0.201083014364659 0.199408483910897 0.200610075953365 0.199453294293328 0.201969126221657 0.19740374575883 0.198818807964137 0.196648515225531 0.200826921790108 0.199549288518813 0.196371150172254 0.200750988086805 0.198112933015187 0.198408384268236 0.195789542703413 0.201179913620775 0.197750644167060 0.201770152607060 NA NA NA NA NA FALSE FALSE 0.0411987502674592 0.480083399295614 0.643422379086071 1 0.890656000841756 13.0340766639459 0.0411987502674592 0.0764869417811671
AT1G54260_at 5.3729441540159 5.46046348516643 5.74272259733318 5.34363962074194 5.77970949157477 5.52768600732074 5.84021264146819 5.10891499330072 4.90794343101047 5.09656076471244 5.32447139330669 5.31088476495709 5.22597421855024 5.2393142027382 4.81574120844851 5.34844964015144 5.07421306849557 4.56490870795578 5.43439178476551 0.223166337274966 0.233574135423561 0.227473009473170 0.232501740437952 0.22408686103962 0.235095415500923 0.224086242962716 0.225371224895838 0.233019911205792 0.223962774286073 0.222466041314685 0.232687239762634 0.232416852064411 0.229004094070189 0.228493519830867 0.223348035475725 0.241158121211533 0.240964344355409 0.234782695195904 1 1|0 +|/ 20261103 20262818 20262224.889 20261007 20262843 + gene protein_coding_gene FALSE TRUE AT1G54260.1 histone H1/H5 family protein similar to DNA-binding family protein / histone H1/H5 family protein [Arabidopsis thaliana] (TAIR:AT1G72740.2); similar to Linker histone, N-terminal; Homeodomain-related [Medicago truncatula] (GB:ABE81296.1); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0597508005837436 0.48005001646113 0.643445146747443 1 0.890639656673893 10.6516832792344 0.0597508005837436 0.151384649406432
AT2G42590_at 11.5986852893558 11.8475629597568 11.4025971152407 11.6687008251227 11.6746460178418 11.5759462767370 11.8856450044798 12.0095073275601 11.3661924271423 11.7172586397915 11.7024608457926 11.8068322460702 11.7403094602627 11.5377809970809 11.8764632515386 11.8605919917571 11.7816858414935 11.8958814267906 11.7155388031390 0.0777033200134265 0.0761542499909302 0.0774918293259939 0.0769376517007088 0.0792319868244411 0.0778884341854284 0.0797533579642103 0.0781479396712621 0.0856914820894903 0.0811746624543678 0.0779548802606674 0.0755282311274308 0.0755282311274308 0.0848513824940928 0.0769312604191428 0.0755282311274308 0.0812949931440591 0.0767840852499438 0.080022506598373 2 2|0 -|/ 17739302 17740271 17739900.7 17738933 17741045 - gene protein_coding_gene FALSE TRUE AT2G42590.1|AT2G42590.2|AT2G42590.3 GRF9 (General regulatory factor 9); protein phosphorylated amino acid binding 14-3-3 gene. Binds calcium and displays induced structural changes. Identical to 14-3-3-like protein GF14 mu (General regulatory factor 9) (GRF9) [Arabidopsis Thaliana] (GB:Q96299;GB:O80367); similar to GRF12 (GENERAL REGULATORY FACTOR 12), protein phosphorylated amino acid binding [Arabidopsis thaliana] (TAIR:AT1G26480.1); similar to 14-3-3-like protein B (VFA-1433B) (GB:P42654); contains InterPro domain 14-3-3 protein; (InterPro:IPR000308) -0.0396450594892535 -0.479733087830659 0.643661317261188 1 0.890484542460889 23.3953683758231 -0.0396450594892535 0.0687518962222926
AT1G04230_at 5.68920408738235 5.61222691702779 5.27013171202749 5.95898554436748 5.96751459761151 6.03951688477242 5.54801018900592 5.42014938636727 4.75622927661738 4.83327592868627 4.58407260289676 4.436031583024 4.40910953931629 4.15872139820253 4.69696471373635 4.57981434028012 5.31602985901911 4.94764274086578 4.74686827151964 0.256594696842581 0.246491091656623 0.246491091656623 0.257791754043192 0.250860171393134 0.254634089900219 0.250838755469603 0.246491091656623 0.264601522860980 0.246491091656623 0.247125732056359 0.250723077856645 0.247889449074395 0.246491091656623 0.253372941254499 0.248308493598405 0.256783728771335 0.246491091656623 0.250138081940347 1 0|1 /|+ 1126630 1127568 1127303.556 1125517 1128167 + gene protein_coding_gene FALSE TRUE AT1G04230.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G43720.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54460.1); similar to Os03g0797700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051564.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017) 0.0519483639877054 0.479493534809077 0.643824735218956 1 0.890367362273568 10.3981371678746 0.0519483639877054 0.122609907273606
AT3G19800_at 10.3913236693713 10.3267554942813 10.5767072849924 10.5197980238003 10.7264790939837 10.6524384908851 10.8257254825468 10.6865673318480 10.7290210225841 10.7471923182454 10.5084217266166 10.3144569525245 10.6233687175040 10.6722421766027 10.3564169106457 10.8776701055027 10.8091178759339 10.7027505202899 10.7359484428725 0.102708541684415 0.0969166112598692 0.101626771925415 0.101247054884441 0.0985457726218455 0.0995254113871239 0.100489406443677 0.0992249804800569 0.105957499546364 0.100214504935161 0.0969166112598692 0.0972811050654952 0.0974875546493671 0.0983021240614914 0.102138422236313 0.0969166112598692 0.102199361143276 0.100438140767871 0.0969166112598692 3 3|0 +|/ 6876436 6877090 6876789 6876120 6877648 + gene protein_coding_gene FALSE TRUE AT3G19800.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78177.1) -0.0340344545640032 -0.479487171525998 0.643829076393658 1 0.890364250351315 21.2609458011819 -0.0340344545640032 0.0310799214708420
AT2G44680_at 5.78639825907928 6.33919602788887 5.90680036338399 6.16711795794015 6.99277805981006 5.92607953501904 6.16473056245603 6.4454796875938 5.83706136369445 5.70313113222817 5.90149323504161 5.75281490193132 5.79671544189858 6.4825291043565 4.80412966746473 6.37836068758597 5.50705005385649 5.38617498039193 5.43203214075637 0.287263105481109 0.289075805599566 0.31940415465681 0.295294683656390 0.291404342929569 0.296823080284693 0.30233475920602 0.287263105481109 0.300366405420888 0.292559519080923 0.291255938370088 0.287263105481109 0.287263105481109 0.287263105481109 0.301294765721946 0.287263105481109 0.311383885232536 0.290479251468991 0.29232940928789 2 2 - 18433995 18434850 18434276.889 18433621 18435432 - gene protein_coding_gene FALSE TRUE AT2G44680.1|AT2G44680.2 CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein kinase CK2/ protein kinase CK2 regulator|CKB4 (CASEIN KINASE II BETA SUBUNIT 4); protein kinase CK2 regulator Encodes casein kinase II beta chain, a CK2 regulatory subunit. Nuclear-localized CKB4 protein exists in vivo as different isoforms, resulting from phosphorylation on serine residues. The phosphorylated isoforms are the preferred substrate for ubiquitination and degradation by the proteasome pathway. Involved in regulation of circadian clock. Identical to Putative casein kinase II subunit beta-4 (CK II beta-4) [Arabidopsis Thaliana] (GB:O80507;GB:Q941C4); similar to CKB3 (casein kinase II beta chain 3), protein kinase CK2 regulator [Arabidopsis thaliana] (TAIR:AT3G60250.1); similar to protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum] (GB:CAD32500.1); contains InterPro domain Casein kinase II, regulatory subunit; (InterPro:IPR000704) 0.0789965708116904 0.47850023049627 0.644502564309518 1 0.889882064905498 11.9203559172925 0.0789965708116904 0.218214756060838
AT4G13730_at 7.02551331516536 6.79703237068326 6.33160430721269 6.54999541808325 6.79022024267867 6.4901004781639 6.5255992341553 6.54155586407682 6.99741735916164 6.25583236253328 6.73965479724004 6.67634961406565 6.72773016042753 6.98090261085932 6.65690109722713 6.64084781767933 6.57939298810366 6.70257132812932 6.58494151878463 0.201518368400138 0.202685679244337 0.211677046069847 0.20507211016402 0.205139836008390 0.205078959426233 0.193567486031295 0.205664840554140 0.215139210326828 0.204670581434474 0.198015602846600 0.201969757024991 0.210217861031416 0.197025798688678 0.200134204132767 0.194626102040657 0.203443729037644 0.205762019069362 0.196282036494746 4 4|0 +|/ 7972847 7973981 7973557.111 7970270 7974244 + gene protein_coding_gene FALSE TRUE AT4G13730.1|AT4G13730.2 RabGAP/TBC domain-containing protein similar to RabGAP/TBC domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G04830.1); similar to RabGAP/TBC [Medicago truncatula] (GB:ABE83596.1); contains InterPro domain RabGAP/TBC; (InterPro:IPR000195) -0.0408158481311216 -0.477998554910868 0.644845040289402 1 0.889637322830536 13.2943397613822 -0.0408158481311216 0.075477371807025
AT4G27750_at 8.43504580783173 8.43234455467448 8.22467298566533 8.25201105207259 8.47470143153386 8.49541455770464 8.1703917094226 8.25075096932513 7.6199487079844 8.23754457951171 8.23393709862295 8.15013250397162 8.11785323459444 8.30032536759455 8.25274148827677 7.92938950902866 8.18312868138846 7.72987992131984 8.4013824969289 0.152168931893127 0.151599440658864 0.157259901098490 0.154314828352647 0.158965669108500 0.164555595967167 0.154751484145894 0.156771306211771 0.175107238228185 0.151325957154861 0.153490199883512 0.154303925656057 0.150900266756255 0.150722118851143 0.153650245245090 0.159720600463428 0.158009412698312 0.163678056423336 0.153085439820475 4 4|0 +|/ 13842209 13843481 13842944.778 13841694 13843639 + gene protein_coding_gene FALSE TRUE AT4G27750.1 ISI1 (IMPAIRED SUCROSE INDUCTION 1); binding A genetic locus involved in sugar sensing and coordinating carbohydrate synthesis and utilization by the whole plant. Lines carrying mutations in this gene shows restricted carbohydrate allocation to plant growth and seed set, elevated chlorophyll levels, and reduced sugar induction of starch biosynthesis. similar to impaired sucrose induction 1-like protein [Solanum tuberosum] (GB:CAG26906.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0327241469443074 0.477979285546115 0.644858196580473 1 0.889627927116067 16.4411493353995 0.0327241469443074 0.0151275028275792
AT2G36000_at 4.96179462078074 5.93808077496068 4.70117556324248 4.76506506267763 6.22722115121529 5.67717958522717 6.11882633588944 6.28841111511062 5.56741859562622 5.18810921079967 5.70789216279523 6.33413421699753 5.61706416236062 6.06244186178122 5.75703577723351 6.57085088733618 5.79980359978962 6.14474322651384 6.22430810154384 0.245218697126825 0.237683919593856 0.242423848972592 0.240922891495182 0.234966253434986 0.263263500445070 0.243062496564293 0.255609995152213 0.265945007885359 0.241743412384187 0.237142034356579 0.240422976071006 0.248294378719061 0.256414433212237 0.237670426707681 0.233886364901851 0.24844776533505 0.247407180444677 0.248567253605564 2 2 + 15124645 15125128 15124853.455 15124154 15125776 + gene protein_coding_gene FALSE TRUE AT2G36000.1|AT2G36000.2 mitochondrial transcription termination factor-related / mTERF-related similar to mitochondrial transcription termination factor-related / mTERF-related [Arabidopsis thaliana] (TAIR:AT2G34620.1); similar to Os03g0360600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050155.1); similar to mTERF-like protein [Brassica napus] (GB:ABC70867.1); similar to Os03g0785200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051481.1); contains InterPro domain Mitochodrial transcription termination factor-related; (InterPro:IPR003690) -0.0724087184501672 -0.477912577426002 0.644903743026965 1 0.889595403093473 11.4143147958918 -0.0724087184501672 0.196439626495519
AT4G16490_at 8.06371831995565 8.42541401610526 8.4625048551612 8.41048170184465 9.17860058293818 8.74781965065347 9.7150136500802 9.86432147769335 7.92196557189858 7.7271810685607 8.1275834428799 8.16313795747568 8.73482851249635 8.55800234431872 7.67402864497996 8.48197213386886 7.66980924997642 8.3464115951375 7.77940110695974 0.158829429559256 0.157197795647159 0.173842619480795 0.157107874840232 0.160358822714251 0.159339516351898 0.163587014976476 0.157918818735983 0.167945195072219 0.157400082222823 0.157855733994628 0.156912599003264 0.157178580418719 0.1589630201155 0.161254231026055 0.163601124537665 0.177699279149009 0.156015373208299 0.157524899674020 4 4 - 9294811 9295316 9295064.909 9293565 9295648 - gene protein_coding_gene FALSE TRUE AT4G16490.1 armadillo/beta-catenin repeat family protein similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G23140.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE88245.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0463453255130490 0.476817052404894 0.645651963203335 1 0.889061884944602 16.872978107278 0.0463453255130490 0.101114171715781
AT4G24040_at 7.93367919415 8.15125456011948 6.27617509651684 6.32007843353743 7.940090033225 7.38750673196602 5.12982415005135 5.05838347790684 7.6075180891493 5.30637385078892 5.81624518542466 6.17797064797412 6.59527334485101 6.47781043276012 5.11887618678012 5.85291222258841 4.93517050159981 6.1580171051022 5.71767825996925 0.211159780827384 0.214698819678206 0.216657617448081 0.208913354214985 0.213207839790492 0.214513625177108 0.209877202214372 0.211427368256787 0.216198648670543 0.214657752266882 0.205481537628323 0.20490435042222 0.213981371060967 0.20762608310365 0.211934891540817 0.20490435042222 0.211403846068222 0.213006145684242 0.20490435042222 4 4|0 +|/ 12490195 12491042 12490560.5 12488193 12491207 + gene protein_coding_gene FALSE TRUE AT4G24040.1 ATTRE1 (TREHALASE 1); trehalase Encodes a trehalase, member of Glycoside Hydrolase Family 37. similar to trehalase 1 GMTRE1 [Glycine max] (GB:AAD22970.1); contains InterPro domain Six-hairpin glycosidase; (InterPro:IPR008928); contains InterPro domain Glycoside hydrolase, family 37; (InterPro:IPR001661) 0.046844140835154 0.47541838374581 0.646607842999593 1 0.888382416425038 12.8256528863612 0.046844140835154 0.103792211536788
AFFX-r2-Bs-thr-M_s_at 4.17193520417391 4.95642456597772 6.09255492465876 4.74363977201136 7.19439919465096 4.48282509727028 7.04863343145918 4.91067135159296 7.01043239932437 7.64110171847479 6.57097827912418 7.32119548604643 6.60690867384642 6.86342828824239 6.06215812655803 6.9432538429192 6.4149452621888 6.53998002671656 7.7151138500089 0.226481060862023 0.218120449101077 0.224255350716292 0.229636316080651 0.216191068306723 0.226894740360258 0.219578959117445 0.224949701172835 0.236123670624994 0.219127545902872 0.222082112082993 0.212264382719995 0.212794850036254 0.223764862882508 0.219717240791749 0.221138735958194 0.222094295321322 0.216075861359805 0.22014713780175 NA NA NA NA NA FALSE FALSE -0.216877357775270 -0.473985778749779 0.647587633919466 1 0.887688415843551 12.5105881031284 -0.216877357775270 0.655749577586962
AT2G02090_at 7.98871922906183 8.09780337839238 8.35177220831304 8.15511276649032 8.38070027043521 7.87488724033581 7.96461050435662 7.71696245433263 7.0627509834229 7.04870096470218 6.68587112424634 7.29533090447488 6.99597590744203 7.30369632459736 6.60717439660868 7.34791034881896 7.08028145911654 7.0051341955051 7.47302564641299 0.176131601813 0.175656367240587 0.173585641843452 0.185208012959402 0.181700860734072 0.179906904590763 0.178851886751130 0.175784099080856 0.220178319178654 0.175247693331198 0.181301870527397 0.173369518065689 0.182362274699190 0.183509201632334 0.185565356153498 0.179974975431597 0.199332388204118 0.192322920656781 0.172782479746261 2 2|0 +|/ 525995 526818 526424.9 523283 527011 + gene protein_coding_gene FALSE TRUE AT2G02090.1 CHR19/ETL1 (chromatin remodeling 19); ATP binding / DNA binding / helicase similar to CHR11 (CHROMATIN-REMODELING PROTEIN 11), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT3G06400.1); similar to Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) (ISS) [Ostreococcus tauri] (GB:CAL53914.1); similar to OSJNBa0005N02.1 [Oryza sativa (japonica cultivar-group)] (GB:CAE02069.2); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0469700988064738 0.473909041754922 0.6476401365659 1 0.887651297759524 15.1838198551884 0.0469700988064738 0.104944586774432
AT4G18880_at 8.47071815511798 8.76295962204241 8.56174620751402 8.60066417430821 8.46191444046315 8.2453479985929 6.44804739438328 7.05361284977476 6.4939493123648 5.6175161907988 4.92182436219336 5.78445045659054 5.47614465018286 5.79164349853347 4.55874506362927 5.34903746346695 5.61781109523613 5.591825941964 6.0912261629852 0.246106265454076 0.239283606868579 0.245299077126735 0.240338941520996 0.239283606868579 0.242508158631885 0.239283606868579 0.243797320226583 0.244751317517240 0.246792778010938 0.244596009529304 0.240587835755545 0.244944481468316 0.245487602451461 0.241054542109286 0.241929394344812 0.245218310729303 0.250369453796131 0.239283606868579 4 4 - 10347792 10348336 10348053.364 10347593 10349573 - gene protein_coding_gene FALSE TRUE AT4G18880.1 AT-HSFA4A (Arabidopsis thaliana heat shock transcription factor A4A); DNA binding / transcription factor member of Heat Stress Transcription Factor (Hsf) family Identical to Heat stress transcription factor A-4a (AtHsfA4a) (Heat shock factor protein 21) (HSF 21) (Heat shock transcription factor 21) (HSTF 21) (HSFA4A) [Arabidopsis Thaliana] (GB:O49403;GB:O82078); similar to AT-HSFA4C (Arabidopsis thaliana heat shock transcription factor A4C), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G45710.1); similar to heat shock transcription factor [Phaseolus acutifolius] (GB:AAL12248.1); contains InterPro domain HSF/ETS, DNA-binding; (InterPro:IPR002341); contains InterPro domain Heat shock factor (HSF)-type, DNA-binding; (InterPro:IPR000232); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0512275638241364 0.473256804497354 0.648086474443265 1 0.887336036403658 13.80262595787 0.0512275638241364 0.122432992066812
AT2G41530_at 10.1601323342865 10.1835530429007 10.1390068181198 9.98501875957949 10.1103907808059 9.97783356539397 10.1143136941887 10.0440986749256 9.54493459219932 10.0159383964811 9.95673843980023 10.0458338253739 9.83105467906468 10.1044706047221 10.1098531356921 9.8349849018698 10.062890873284 10.2349385431973 10.0839354662936 0.0959191922973894 0.0925313109648311 0.101946622123329 0.0962193946696409 0.0914666167123066 0.0975879100570494 0.0944855919711521 0.0901495449713885 0.109417745243614 0.095267859128519 0.0939032745233714 0.0902177405125522 0.0901495449713885 0.0914544139565655 0.0954945796957878 0.0905662996441558 0.0955125108818967 0.0974461338166565 0.0916751778421956 2 2|0 -|/ 17330770 17331592 17331177.111 17330573 17332689 - gene protein_coding_gene FALSE TRUE AT2G41530.1 esterase, putative Identical to S-formylglutathione hydrolase (EC 3.1.2.12) (AtSFGH) (Esterase D) (SFGH) [Arabidopsis Thaliana] (GB:Q8LAS8;GB:O22215); similar to hypothetical protein LOC550494 [Danio rerio] (GB:NP_001017796.1); similar to Os01g0939700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045351.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Putative esterase; (InterPro:IPR000801) 0.0342654257251294 0.473123839728909 0.64817748310008 1 0.887271817712041 20.0413926806252 0.0342654257251294 0.0374224122563482
AT1G27770_at 8.8741073781025 8.85064458810051 9.53197404554466 9.44768894514978 8.98864855459442 8.6326105451319 8.6432651076839 8.37930328734584 8.61513111264294 8.095234571378 7.25465899685735 7.71899378979603 7.58185297778081 7.78558337094598 7.59376640131327 7.35250173933107 7.28439305926754 7.65361199496938 7.50982622375113 0.154296370432169 0.151593104185177 0.157810818332473 0.156718091752365 0.151611223993016 0.151593104185177 0.154076076228423 0.159419740837649 0.169664101108430 0.151593104185177 0.158058107633201 0.152850294508872 0.161231672307818 0.161067796785819 0.152636302158493 0.160104137354889 0.158443001086424 0.153333541458520 0.166273683089580 1 1|0 -|/ 9671901 9672650 9672230.4 9671625 9676144 - gene protein_coding_gene FALSE TRUE AT1G27770.1|AT1G27770.2 ACA1 (autoinhibited Ca2+ -ATPase 1); calcium-transporting ATPase/ calmodulin binding|ACA1 (autoinhibited Ca2+ -ATPase 1); calmodulin binding Encodes a chloroplast envelope Ca2+-ATPase with an N-terminal autoinhibitor. Identical to Calcium-transporting ATPase 1, chloroplast precursor (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) (ACA1) [Arabidopsis Thaliana] (GB:Q37145;GB:Q37146;GB:Q42571;GB:Q42587;GB:Q9SFY1); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to plasma membrane Ca2+-ATPase [Glycine max] (GB:AAG28436.1); similar to plasma membrane Ca2+-ATPase [Glycine max] (GB:AAG28435.1); similar to type IIB calcium ATPase MCA5 [Medicago truncatula] (GB:AAM44081.1); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014)|Identical to Calcium-transporting ATPase 1, chloroplast precursor (EC 3.6.3.8) (Ca(2+)-ATPase isoform 1) (Plastid envelope ATPase 1) (ACA1) [Arabidopsis Thaliana] (GB:Q37145;GB:Q37146;GB:Q42571;GB:Q42587;GB:Q9SFY1); similar to ACA2 (CALCIUM ATPASE 2), calmodulin binding [Arabidopsis thaliana] (TAIR:AT4G37640.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA11) [Arabidopsis thaliana] (TAIR:AT3G57330.1); similar to calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative (ACA7) [Arabidopsis thaliana] (TAIR:AT2G22950.1); similar to plasma membrane Ca2+-ATPase [Glycine max] (GB:AAG28436.1); similar to type IIB calcium ATPase MCA5 [Medicago truncatula] (GB:AAM44081.1); similar to type IIB calcium ATPase [Medicago truncatula] (GB:AAL17949.1); contains InterPro domain ATPase, P-type cation exchange, alpha subunit; (InterPro:IPR006069); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium-translocating P-type ATPase, PMCA-type; (InterPro:IPR006408); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014) -0.0409132895055064 -0.472769975860855 0.64841971807769 1 0.88710099328847 16.7193141033934 -0.0409132895055064 0.078180379631432
AT2G05520_at 13.2311039907686 13.2656867282803 13.4167592323834 13.3013455357948 13.3666013696020 13.3877535410213 13.0291181861329 13.1166791054806 13.7232562461934 13.8787719642631 13.8368951204436 13.4271996476138 13.8989890982624 13.7082256234686 13.3198490408933 12.9198218672411 13.6940968174418 13.7300400809058 13.5234045733983 0.066386663342148 0.0639063074443001 0.0640982008566346 0.0629716584508214 0.067537555197367 0.0634602095048465 0.0644640363447074 0.0617965740398084 0.0649479178453811 0.0618458370938673 0.0623869668600302 0.0613740496951931 0.0647486415326252 0.0653307541016794 0.0618389948721504 0.0643715010127842 0.063080038251191 0.0657598966361553 0.062535110122259 2 2|0 +|/ 2026257 2026833 2026665 2026159 2027114 + gene protein_coding_gene FALSE TRUE AT2G05520.1|AT2G05520.2|AT2G05520.3|AT2G05520.4|AT2G05520.5 GRP-3 (GLYCINE-RICH PROTEIN 3) Encodes a glycine-rich protein that is expressed mainly in stems and leaves. mRNA levels are upregulated in response to ABA, salicylic acid and ethylene but downregulated in response to dessication. similar to GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) [Arabidopsis thaliana] (TAIR:AT2G05380.1); similar to glycine-rich protein [Brassica oleracea] (GB:AAL67434.1); contains InterPro domain Glycine rich; (InterPro:IPR010800) 0.0329399922251294 0.470521651260111 0.649959823674574 1 0.88601845784232 26.9020645895090 0.0329399922251294 0.0260334362596549
AT1G56110_at 5.74059855451327 6.21768563997703 6.13060732179306 6.02294882695842 5.59384019212028 5.73139759330742 6.31459063784874 6.09311230432881 4.74147044114859 5.15361991228056 5.07246775442194 5.97746381958815 4.79032113943947 4.84897907945057 5.88973408382797 5.04210633414669 5.51771786907473 4.46451259683233 4.77368392833305 0.210991104476285 0.207234844384265 0.210048603354555 0.207652666866352 0.208122318313726 0.214987781271793 0.204941283138493 0.208917001944569 0.220127456091505 0.203821697172404 0.216649751921408 0.205576309293127 0.20850721700367 0.208126928338312 0.210967395438546 0.208336377609029 0.218494931851998 0.213625265010635 0.212629918711219 1 1|0 -|/ 20988245 20989036 20988750.4 20988054 20990616 - gene protein_coding_gene FALSE TRUE AT1G56110.1 NOP56 (ARABIDOPSIS HOMOLOG OF NUCLEOLAR PROTEIN NOP56) NOP56-like protein similar to nucleolar protein Nop56, putative [Arabidopsis thaliana] (TAIR:AT3G12860.1); similar to nucleolar protein [Cicer arietinum] (GB:CAA10127.1); similar to Os03g0352300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050122.1); similar to Pre-mRNA processing ribonucleoprotein, binding re (GB:ABE82021.1); contains InterPro domain NOSIC; (InterPro:IPR012976); contains InterPro domain NOP5, N-terminal; (InterPro:IPR012974); contains InterPro domain Pre-mRNA processing ribonucleoprotein, binding region; (InterPro:IPR002687) 0.0445115533607472 0.470257778371015 0.650140693645348 1 0.885891726748793 11.0255997647818 0.0445115533607472 0.0959130599822996
AT4G20760_at 7.19771886152736 7.30691117733208 7.01482056263863 7.04095674664994 6.85479647184142 7.05681391995436 7.97949762857568 8.28625366622243 7.26459754098016 7.38520068927337 7.90281259348128 8.17530205941261 7.64936516939503 7.98354164115494 8.45067293887393 7.9390217003133 7.47582903720889 8.12112430539476 6.9043365381029 0.141060942034473 0.142030139499494 0.149647611700241 0.143350306256238 0.143138407507600 0.157377817427928 0.147343212314356 0.146823312496313 0.149146922741712 0.145862331833898 0.142131260601404 0.145425057771013 0.151322252532686 0.147810144423201 0.143465975681924 0.141268939261175 0.151616368835245 0.142274548994927 0.148039443723471 4 4|0 +|/ 11129102 11130505 11129766.882 11129026 11130781 + gene protein_coding_gene FALSE TRUE AT4G20760.1 short-chain dehydrogenase/reductase (SDR) family protein similar to ABA2 (ABA DEFICIENT 2), oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G52340.1); similar to oxidoreductase, short chain dehydrogenase/reductase family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99281.1); similar to Os12g0609500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067243.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) 0.0383743415294475 0.469441974290691 0.650700036043829 1 0.885500343013994 14.9156812643960 0.0383743415294475 0.0664665945639211
AT3G08780_at 5.43096830405053 6.42476504050746 5.35329110650618 5.56246223501507 6.67794701912327 5.67195955785008 5.41272075311169 5.98470028830354 5.7945516558317 4.56806537825514 5.5251642956542 5.11301383798184 5.33625061258162 5.31009937482666 4.07074785215771 4.90969383709626 4.14212551825256 4.40494787838430 4.75284480793426 0.279186756481622 0.279186756481622 0.279186756481622 0.282015158701477 0.282978052802411 0.283989361924233 0.283670224247425 0.279186756481622 0.297278132287196 0.283849303338021 0.279186756481622 0.283313680456691 0.285595616798759 0.279186756481622 0.279186756481622 0.283498194257709 0.287923396230155 0.279411588196916 0.279186756481622 3 3 - 2666568 2666896 2666764.429 2666085 2667539 - gene protein_coding_gene FALSE TRUE AT3G08780.1|AT3G08780.2 similar to hypothetical protein [Medicago sativa] (GB:AAL15647.1) -0.0919277483382323 -0.469192763598326 0.650870949779339 1 0.885380911788279 10.7598481288288 -0.0919277483382323 0.266445510015649
AT2G29320_at 8.10543216181331 8.19725748739059 8.35295755028742 8.27970478706615 9.23214477669792 8.7162318593199 8.70236470880298 8.40841132230599 7.39147996705388 7.96187262461877 7.13792035037527 6.96118026989425 7.20388893479621 7.8821274917671 6.60009924622203 7.8062014478792 8.3580931150187 7.16572569289726 7.96772395752312 0.178852133189855 0.179236631023080 0.183922294758623 0.183294966505945 0.180105318434570 0.181085380449708 0.179407191662407 0.176916083781595 0.19728731742923 0.177139652169448 0.191440886210262 0.189032473656831 0.1888481586691 0.182043711569112 0.202422540903488 0.178655698230506 0.182970969432009 0.188178736224342 0.175841834120564 2 2|0 +|/ 12599569 12600407 12599954.6 12599225 12600763 + gene protein_coding_gene FALSE TRUE AT2G29320.1 tropinone reductase, putative / tropine dehydrogenase, putative similar to tropinone reductase, putative / tropine dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT2G29300.1); similar to Tropinone reductase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95188.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.0461971455971855 -0.466577261133947 0.652666027380125 1 0.884131082457218 16.0808614575463 -0.0461971455971855 0.104747772190735
AT1G79350_at 6.3521643816949 6.4699135344727 5.95059149686698 6.23301388909667 6.73356295024811 6.47982932461978 6.42129850428888 6.20409049524692 6.48193502594167 6.0146942435621 6.23261802194144 6.54538722200739 5.77671480104401 6.18511969415109 6.10909754182948 6.3240767115656 6.2837802660707 6.02771549637366 6.26461258010985 0.194399158473898 0.192140475977067 0.189329520542955 0.190925522549457 0.185051012771745 0.191806352484973 0.199863116948562 0.209718831282372 0.186561286288447 0.193592944314884 0.187838602667832 0.193288581921259 0.189769999440353 0.201807960381341 0.185797963071166 0.188458616134909 0.191143271099321 0.182700118672213 0.182700118672213 1 1|0 -|/ 29849879 29850718 29850158.75 29849548 29858307 - gene protein_coding_gene FALSE TRUE AT1G79350.1 EMB1135 (EMBRYO DEFECTIVE 1135); DNA binding similar to ATXR6 (Arabidopsis thaliana Trithorax- related protein 6), DNA binding [Arabidopsis thaliana] (TAIR:AT5G24330.1); similar to H0702G05.10 [Oryza sativa (indica cultivar-group)] (GB:CAH67751.1); similar to Helicase, C-terminal; Zinc finger, RING-type; Protein kinase C, phorbol ester/diacylglycerol binding; Zinc finger, FYVE/PHD-type; RINGv [Medicago truncatula] (GB:ABE81331.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80563.1); contains InterPro domain Zinc finger, LSD1-type; (InterPro:IPR005735); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0404004387747920 -0.466358239126737 0.652816455691714 1 0.884026721779764 12.5752135733556 -0.0404004387747920 0.07838962582264
AT1G22940_at 5.72042914907956 5.02878630391148 4.59424313291439 4.68896178998075 4.972684362088 4.59498524104776 5.28003135665404 4.97627033935264 5.09764029635373 4.22582440393457 4.86622800981578 4.91295871778248 5.40053993710054 5.29638112356227 5.1911737277616 5.42711604067069 4.66320411050348 4.45938214825003 4.48315534441085 0.209618308702031 0.205618685288802 0.205618685288802 0.205618685288802 0.211876687680930 0.215446950034353 0.209865614126568 0.206159113578283 0.205618685288802 0.205618685288802 0.205618685288802 0.209257675730608 0.205618685288802 0.206252372560588 0.20924754914665 0.215582420391224 0.219898022194058 0.206918891766127 0.210556369850585 1 1 + 8124211 8124808 8124530.7 8122340 8125057 + gene protein_coding_gene FALSE TRUE AT1G22940.1 TH1 (THIAMINE REQUIRING 1); phosphomethylpyrimidine kinase/ thiamin-phosphate diphosphorylase Thiamine requiring 1 similar to BTH1 [Brassica napus] (GB:AAC31298.1); similar to phosphomethylpyrimidine kinase/thiamin-phosphate pyrophosphorylase [Zea mays] (GB:CAJ45026.1); similar to Thiamine monophosphate synthase; Phosphomethylpyrimidine kinase [Medicago truncatula] (GB:ABE87727.1); contains InterPro domain Phosphomethylpyrimidine kinase type-2; (InterPro:IPR004399); contains InterPro domain Phosphomethylpyrimidine kinase type-1; (InterPro:IPR013749); contains InterPro domain Thiamine monophosphate synthase; (InterPro:IPR003733) -0.0568721801886124 -0.466237434868306 0.652899433433457 1 0.883969180217073 9.7967137886272 -0.0568721801886124 0.147072930071370
AT1G28340_at 9.08923820928325 9.11289687074725 8.79319453643044 8.74807983928047 9.25984345975154 9.08505498617649 9.42453066132248 9.14738152912784 8.37616041008681 8.77259438491879 9.05300494693304 9.01526988197444 8.69236665585862 8.90029602037244 8.82191894435634 8.62845449647032 8.95167923616653 8.88471105867954 8.57180012667872 0.148942264992213 0.147136709039829 0.146016278861559 0.149846539916913 0.153537021061021 0.148485666566741 0.156414598995168 0.153552127546826 0.184430177897088 0.168395546550920 0.149328899780927 0.153231823078448 0.157983193627452 0.148368957438666 0.162551370055370 0.151794079369179 0.145794250837512 0.158186007436284 0.170946374029001 1 1|0 +|/ 9942347 9943182 9942869 9940162 9943536 + gene protein_coding_gene FALSE TRUE AT1G28340.1 leucine-rich repeat family protein similar to leucine-rich repeat protein-related [Arabidopsis thaliana] (TAIR:AT1G25570.1); similar to Os07g0501800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059721.1); similar to leucine-rich repeat family protein [Lycopersicon esculentum] (GB:ABH07898.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, plant specific; (InterPro:IPR007090) 0.0364878678314202 0.465408388321621 0.653469024454043 1 0.883574668878465 17.8035179926797 0.0364878678314202 0.0573847073650631
AT1G51690_at 7.98911490952379 7.90315218285034 7.9569442521333 7.42442499210717 8.63178268767283 7.76554538314717 8.28062670703886 8.14453687905619 7.80005237370799 8.28999458390422 8.59789039516321 8.9090349234695 8.70822340379442 8.3793998263384 8.240590059173 8.74527284193234 7.7671098698106 7.8435580741308 8.31201061207205 0.215657755234873 0.227250126554578 0.215657755234873 0.229349004257368 0.221511417861794 0.233322003534808 0.217805852712759 0.215657755234873 0.239937533698807 0.220496131362646 0.234941510422299 0.217346423436681 0.218081662176043 0.228628914880592 0.227943611333098 0.219844291432265 0.247273738701422 0.223920522973164 0.218502827343864 1 1|0 +|/ 19172621 19173595 19173066.778 19167731 19174114 + gene protein_coding_gene FALSE TRUE AT1G51690.1|AT1G51690.2 ATB ALPHA (protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform); nucleotide binding 55 kDa B regulatory subunit of phosphatase 2A mRNA, Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (PP2A, subunit B, alpha isoform) (AtB alpha) (PP2AB1) [Arabidopsis Thaliana] (GB:Q38821;GB:Q8L842;GB:Q9C8H8); similar to ATB BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G17720.1); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046)|Identical to Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform (PP2A, subunit B, alpha isoform) (AtB alpha) (PP2AB1) [Arabidopsis Thaliana] (GB:Q38821;GB:Q8L842;GB:Q9C8H8); similar to ATB BETA (Arabidopsis thaliana serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isofor), nucleotide binding [Arabidopsis thaliana] (TAIR:AT1G17720.2); similar to protein phosphatase 2A 55 kDa B regulatory subunit [Oryza sativa] (GB:AAC32204.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29596.1); similar to Ser/Thr specific protein phosphatase 2A B regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29595.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Protein phosphatase 2A regulatory subunit PR55; (InterPro:IPR000009); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0650911967398011 0.463825025417753 0.654557529704709 1 0.882823054358678 16.2784680562519 0.0650911967398011 0.178158398986071
AT3G51830_at 7.55340898092203 6.95511875213573 7.65734757566669 7.47384631135264 8.46387178981565 7.83938990873572 8.0305442636576 7.18647698760201 7.34710114457692 7.9974851033845 7.52394472815632 7.46243212686852 7.83346636190003 7.63654491972326 7.03866939227629 7.75210290472067 7.66132085679995 7.61614281851275 8.1862271853845 0.134667855251323 0.135262340568018 0.142845631286211 0.141102743077476 0.143314140453774 0.142134739031045 0.139283226440189 0.142866584215560 0.15342547002167 0.133747061651127 0.13917057478186 0.136183316871103 0.140844362227519 0.158502635153641 0.144960018608899 0.136057910414072 0.152750645302699 0.150123272947753 0.137464714749333 3 3|0 +|/ 19234171 19236028 19235157.25 19231098 19236257 + gene protein_coding_gene FALSE TRUE AT3G51830.1 ATG5 (G5p-related protein); phosphoinositide 5-phosphatase putative transmembrane protein G5p (AtG5) mRNA, complete similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G51460.1); similar to Os03g0290500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049796.1); similar to Transmembrane protein G5p, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95396.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) 0.074600093075541 0.463661480268222 0.654670010889327 1 0.882745558471592 15.3495918169369 0.074600093075541 0.211527108862595
AT3G30510_at 6.34556937233618 5.8758692139429 6.11668630504383 6.3087378557413 2.34141706769005 5.41691483841156 2.58778626318695 6.1417608967059 7.37340492357771 7.34769868966832 7.2166449517728 6.86867883792129 7.11220011348482 6.4151355415336 7.31524205446891 6.91314726496652 6.90984737976725 7.57813559278783 7.40800469082816 0.318136274583695 0.300353360903875 0.300353360903875 0.318377074222404 0.341828684181967 0.354031411681303 0.363100098217073 0.300353360903875 0.300353360903875 0.300353360903875 0.300353360903875 0.316948741580476 0.334410465628712 0.317630534551795 0.300353360903875 0.300353360903875 0.329394389504157 0.300353360903875 0.328809284395564 3 0|3 /|+ 12123127 12123130 12123128.5 12123056 12123207 + gene protein_coding_gene FALSE TRUE AT3G30510.1 unknown protein -0.263523943712409 -0.463469486458229 0.65480207003958 1 0.882654615207228 12.3505919275220 -0.263523943712409 0.81807323987778
AT2G43370_at 5.53617207680886 5.01953609823934 5.55788986208653 5.70940058687339 4.89501923231316 5.70774586135754 4.73305784659681 4.75441409067678 4.88521831844141 5.41459126930698 4.22813423796443 4.01550150548735 4.76864376319963 4.47750041292444 4.44937376779792 4.99498705974573 5.23675084891505 4.51352500948401 5.20137020720969 0.284026093564972 0.294342084634174 0.287696647181142 0.284026093564972 0.294755337846261 0.308485403390827 0.284026093564972 0.297857700800499 0.299336046769147 0.302989210038793 0.29957655021936 0.290410329526756 0.301148724725737 0.28517547242193 0.297395605944472 0.296779780986226 0.284026093564972 0.284026093564972 0.288226874485878 2 2|0 +|/ 18021175 18022205 18021836 18020447 18022531 + gene protein_coding_gene FALSE TRUE AT2G43370.1 U1 small nuclear ribonucleoprotein 70 kDa, putative similar to U1-70K (SPLICEOSOMAL PROTEIN U1A), RNA binding [Arabidopsis thaliana] (TAIR:AT3G50670.1); similar to Os09g0513700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063653.1); similar to PREDICTED: similar to U1-snRNP binding protein homolog [Gallus gallus] (GB:XP_415114.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.062394499192832 -0.463270043707916 0.654939266374979 1 0.88256018131387 10.1154604605403 -0.062394499192832 0.168748165986679
AT4G32320_at 6.87140738316188 6.71733083855782 6.90766647469509 6.49340440650874 7.67133718417334 6.67775707856175 8.11728373127985 6.86436736230371 5.91755507653135 6.88014736750545 6.61409057039423 6.27128126632085 6.41950621388082 6.42060167126349 6.85907947800551 6.56768309286108 6.67902189123302 6.24422462912341 6.69684287422549 0.185172144048076 0.187820579515235 0.183296477000376 0.194286447592554 0.194723764864359 0.197361811872328 0.203089497284515 0.193598784946262 0.206912537707971 0.193956613882773 0.187248510900643 0.189596980347884 0.188084416278452 0.183632666200397 0.183296477000376 0.184056412186810 0.195238611548149 0.203484913937662 0.183296477000376 4 4|0 +|/ 15603308 15604621 15604015.25 15602727 15605406 + gene protein_coding_gene FALSE TRUE AT4G32320.1 APX6 (ASCORBATE PEROXIDASE 6); L-ascorbate peroxidase Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. Identical to Putative L-ascorbate peroxidase 6 (EC 1.11.1.11) (AtAPx08) (APX6) [Arabidopsis Thaliana] (GB:Q8GY91;GB:O49360); similar to APX2 (ASCORBATE PEROXIDASE 2), L-ascorbate peroxidase [Arabidopsis thaliana] (TAIR:AT3G09640.2); similar to peroxidase family protein (ISS) [Ostreococcus tauri] (GB:CAL54759.1); similar to Os08g0522400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062280.1); contains InterPro domain Plant ascorbate peroxidase; (InterPro:IPR002207); contains InterPro domain Haem peroxidase; (InterPro:IPR010255); contains InterPro domain Haem peroxidase, plant/fungal/bacterial; (InterPro:IPR002016) -0.0969008569799392 -0.462836735319333 0.655237386160574 1 0.88235514734096 13.5438782446000 -0.0969008569799392 0.287101468395587
AT4G17330_at 10.0991584158313 10.0407259601619 10.1908951342983 10.1553648321864 10.4860658598240 10.1891620511050 10.2822093616784 10.1590991285329 9.91924219995078 10.2437475976254 10.0341739214648 10.0146912866581 9.8032072176099 9.7607683282589 9.77439176593608 10.1130759435194 10.2097242178024 10.0835432460146 10.3065952179696 0.0909421806287024 0.0884247528386566 0.0928178303897464 0.0926765524892116 0.0860041714349097 0.0954210552107078 0.0869971018208998 0.0911635315806144 0.0948773891053443 0.0874047140516227 0.0882804551477107 0.089550277002421 0.0888515683865852 0.0992744790644995 0.0922051171217978 0.0887341171994569 0.0887598400788044 0.0899606082634123 0.0891551366674842 4 4 - 9689301 9689906 9689669.636 9688900 9693875 - gene protein_coding_gene FALSE TRUE AT4G17330.1 ATG2484-1 (Arabidopsis thaliana G2484-1 protein); RNA binding gene of unknown function expressed in seedlings, flower buds and stems similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G55600.1); similar to agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G68580.2); similar to Agenet [Medicago truncatula] (GB:ABE81401.1); contains InterPro domain Agenet; (InterPro:IPR008395) -0.0361287974024647 -0.461886863701261 0.655891133991594 1 0.88190632049057 20.2656977576639 -0.0361287974024647 0.0568675518675656
AT2G06520_at 13.1957760572610 13.5034935876308 13.2720832360855 13.2665705217048 13.4599999115014 13.3335496356888 13.7244432675009 13.7412640681775 14.1615030808701 14.044288564518 14.4812431266090 14.4705289229623 14.2784691930454 14.1542842601794 14.2457677506425 14.2102699553020 13.7293912413738 14.2759003963431 14.0787443936131 0.0699398715966613 0.0685109266012965 0.0678071603989589 0.0698340486859345 0.0688392934519977 0.0718950959302295 0.0679081833037488 0.0694419004791724 0.0761081127029836 0.0700419616455305 0.071748734201042 0.0694846832000207 0.069957853416523 0.0752984796318745 0.0718474407703534 0.0678071603989589 0.0876417922296566 0.0709412750923603 0.0695855399403354 2 2 - 2587872 2588176 2588035.545 2587726 2588355 - gene protein_coding_gene FALSE TRUE AT2G06520.1 PSBX (photosystem II subunit X) Encodes a protein with sequence similarity to the spinach photosystem II subunit PsbX. similar to ultraviolet-B-repressible protein [Gossypium hirsutum] (GB:AAS58469.1); contains InterPro domain Photosystem II protein PsbX; (InterPro:IPR009518) -0.0361534547119788 -0.460589964170709 0.656784228781713 1 0.881294928971653 27.5999361367643 -0.0361534547119788 0.0576542410718201
ATCG00580_at 11.2755002719652 11.5666514764794 11.1812551142672 11.4370045787658 11.2310460516455 11.1968761218806 11.6736379231866 11.9032649019312 11.6638255778690 11.5312172665270 12.1180591948432 12.2783640873284 11.9265098415953 12.0551200786653 11.7743372734693 12.3138087181385 11.6443454491786 11.9487029031081 11.5593851167598 0.144327656328150 0.132113156032286 0.143090862355468 0.133315728441127 0.132701781644797 0.155644303208235 0.132243315872533 0.138122406205773 0.140769903419660 0.141574602127280 0.136900308853241 0.134889397079942 0.131543667859518 0.138167984574345 0.137985194483866 0.132723897960485 0.144797524430817 0.143349710764974 0.143060501745314 C C - 64088 64283 64184.4 64071 64322 - gene protein_coding_gene FALSE TRUE ATCG00580.1 PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized. Identical to Cytochrome b559 alpha subunit (PSII reaction center subunit V) (psbE) [Arabidopsis Thaliana] (GB:P56779;GB:Q8HS06); similar to PsbE [Jacquemontia tamnifolia] (GB:AAM55834.1); contains InterPro domain Photosystem II protein cytochrome b559, alpha subunit; (InterPro:IPR006217); contains InterPro domain Photosystem II protein cytochrome b559; (InterPro:IPR006216); contains InterPro domain Photosystem II protein cytochrome b559, alpha subunit, lumenal region; (InterPro:IPR013082); contains InterPro domain Photosystem II protein cytochrome b559, N terminal; (InterPro:IPR013081) 0.0396892230773804 0.458634309291172 0.658132068831276 1 0.880376064187145 23.2292621868532 0.0396892230773804 0.078176464355955
AT3G18420_at 6.97797035699281 7.06731517655327 7.04866299297592 7.16103362815563 6.73911945570718 6.80484728061918 7.35861415882998 7.24450024725585 6.36953245457357 6.80574141124906 6.6437942050802 6.92997019800197 6.29416795074613 6.28572559236482 7.06159363864496 6.85895605595505 6.91802804499904 6.10343190150315 6.2605481300709 0.186706788850894 0.185011226980355 0.189722905672849 0.199919090558183 0.185295848881387 0.192605253106028 0.189651615939724 0.185041491120352 0.184591134765581 0.188039743573515 0.195094922585590 0.188856905978778 0.193016270337246 0.196457875469403 0.197417201413531 0.187299945241988 0.199898674403662 0.188629495425895 0.193705985474380 3 3 - 6324812 6325346 6325112.727 6324639 6325799 - gene protein_coding_gene FALSE TRUE AT3G18420.1 tetratricopeptide repeat (TPR)-containing protein similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT2G37400.1); similar to TPR repeat [Medicago truncatula] (GB:ABE81686.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.032666514548048 -0.456548579318568 0.659571011818956 1 0.879400168716947 13.6080408023244 -0.032666514548048 0.033713157532713
AT2G19270_at 6.5031238791402 7.00796897150822 6.41681467607546 6.82973309987706 6.61857059823185 6.3142683914268 5.88559473648321 6.74944278271852 7.038997379699 6.7255743149658 7.29936071547482 7.00975843751242 7.00999063387056 7.07528798935537 6.7217849419957 6.7497185497073 6.18463317976938 6.4883283092046 7.12379698381134 0.193888485486584 0.196994533957116 0.198941072792171 0.20602997855261 0.209686755426361 0.213975616460154 0.202069992353128 0.199923149800626 0.212960203183841 0.205026658480494 0.194124672398788 0.205854367618051 0.195879809580179 0.207466731350132 0.203527283186884 0.197779139509638 0.215148907327369 0.205575345297012 0.199990602464003 2 2|0 -|/ 8367450 8368471 8368033.8 8367271 8369006 - gene protein_coding_gene FALSE TRUE AT2G19270.1 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51685.1); similar to Os02g0175900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046059.1) -0.0685588079702604 -0.455959942331158 0.659977382951593 1 0.879125513771503 13.4307633439843 -0.0685588079702604 0.194577131828947
AT3G26230_at 8.10041296420961 8.73752406049382 8.93363377197647 8.75940270252805 8.87132967707544 8.06349240222113 8.40396780212876 8.1803960996196 8.19777958007084 7.84055814453502 7.19336169540187 7.28706751541949 7.56717728299188 7.60911408265892 6.5311687075406 8.44163929961139 7.70846266432273 7.35777369516191 7.64619825479947 0.175387682757418 0.178581384635624 0.181851614065965 0.179044840460799 0.177351212378150 0.18406328936992 0.17740612034515 0.187364212420062 0.183911276214518 0.177070597125832 0.179306186687315 0.177405011068298 0.176288106432463 0.182878740234584 0.186042701517984 0.178871995257235 0.201759178355958 0.187285668042587 0.177371120442936 3 3 - 9599479 9599962 9599684.182 9599242 9601196 - gene protein_coding_gene FALSE TRUE AT3G26230.1 CYP71B24 (cytochrome P450, family 71, subfamily B, polypeptide 24); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B24 (EC 1.14.-.-) (CYP71B24) [Arabidopsis Thaliana] (GB:Q9LTL8); similar to CYP71B4 (cytochrome P450, family 71, subfamily B, polypeptide 4), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26280.1); similar to CYP71B25 (cytochrome P450, family 71, subfamily B, polypeptide 25), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26270.1); similar to CYP71B3 (cytochrome P450, family 71, subfamily B, polypeptide 3), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26220.1); similar to Cytochrome P450 71B38 (GB:Q9LXM3); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0657426508712604 -0.455615601555531 0.660215157106457 1 0.878965001996096 16.1846779072101 -0.0657426508712604 0.184678792158151
AT1G13700_at 6.05216513527696 6.11481625249323 5.63575717223468 5.95574888452602 6.24948828294311 6.78280896262411 4.0112258744423 4.05597148120142 6.06218419494643 5.51177786977458 6.41515038850088 4.36709534680534 3.64620456856774 5.15894345828014 4.44775443713533 3.56982119505956 3.97985547576312 4.97925041277248 5.70559568978935 0.260155640568867 0.256785217103132 0.264650069865591 0.249966693680315 0.260338989239418 0.265886613150514 0.258613405800016 0.253747139573616 0.250809970415291 0.252161878299066 0.247235127099246 0.250146957429642 0.258773269835696 0.249557897396311 0.254663642480966 0.251105867540988 0.259689635341403 0.266376009377428 0.247235127099246 1 1 - 4694535 4694841 4694691.636 4694369 4696020 - gene protein_coding_gene FALSE TRUE AT1G13700.1 glucosamine/galactosamine-6-phosphate isomerase family protein similar to EMB2024 (EMBRYO DEFECTIVE 2024), catalytic [Arabidopsis thaliana] (TAIR:AT5G24400.1); similar to putative 6-phosphogluconolactonase [Oryza sativa (japonica cultivar-group)] (GB:BAC83870.1); contains InterPro domain 6-phosphogluconolactonase; (InterPro:IPR005900); contains InterPro domain Glucosamine/galactosamine-6-phosphate isomerase; (InterPro:IPR006148) -0.0459685173738549 -0.455607804178788 0.66022054182201 1 0.878961368641561 10.7724287533164 -0.0459685173738549 0.108453369563034
AT1G48840_at 5.29645716298867 5.39298641919508 4.6843711947893 5.42950461209223 6.68126559217459 6.08247984850518 4.93295652424304 5.96131917423127 6.07140896198731 5.58362714657412 5.12537582997194 5.25995945347563 5.28329163099008 5.39194487469081 5.00475138896085 4.76619803059491 5.24432647685326 5.28780633826349 5.32165918679157 0.241413070533941 0.228251147468757 0.234436229847523 0.229095623997908 0.234215980756399 0.231197181837653 0.228784296243304 0.229419193777966 0.227068730062415 0.232344450447118 0.222710401484768 0.222389964915289 0.226107766021388 0.227739427006344 0.225871569099767 0.224914962986393 0.226177245906643 0.222389964915289 0.226848577602482 1 0|1 /|+ 18067912 18068428 18068133.222 18065189 18068699 + gene protein_coding_gene FALSE TRUE AT1G48840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G18350.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT01350.1); similar to Os10g0127700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064086.1); similar to Os05g0264200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055043.1); contains InterPro domain Protein of unknown function DUF639; (InterPro:IPR006927) -0.0824830935417029 -0.455255078883932 0.660464148840532 1 0.878797070438239 10.9723451584071 -0.0824830935417029 0.243547361583556
AT3G16200_at 5.75870695736732 6.02892634039508 4.85755746711207 5.18583472306953 5.32457414318409 5.43391698766113 5.50512280185238 5.71822763880349 5.31443536441566 5.3557668041057 5.61304694718662 6.2251719815584 5.57259321174346 5.5703726533843 6.21581698270999 4.71250109995717 5.79845202527333 6.0001417797041 5.05708250698689 0.231338478596003 0.228476099867675 0.230255465390205 0.235797518970301 0.227029853254632 0.233833360563672 0.226874881691040 0.228315633945190 0.239838822170691 0.237679444944083 0.230100313347771 0.226874881691040 0.238972045222449 0.230524342692518 0.239595233112492 0.229544112532498 0.230482221664501 0.226874881691040 0.228913262362405 3 3|0 -|/ 5491704 5492362 5491926.1 5491412 5493635 - gene protein_coding_gene FALSE TRUE AT3G16200.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80914.1) -0.0405956221638035 -0.454587453602087 0.66092535606666 1 0.87848642346028 10.9545785376102 -0.0405956221638035 0.0844524491840244
AT4G17730_at 9.44784467394621 9.49646532553155 9.31209210176163 9.2911950764479 9.95286447227153 9.96412265745137 9.07006295042378 9.11908296671525 8.68349077745127 8.70374325107736 8.53984372942726 8.6544666715534 8.78704105382146 8.5117877257746 8.07278873104733 8.81823095425462 8.78554783289224 8.3446021327536 9.15968327878411 0.135516050660354 0.132467370507935 0.134203659877553 0.133910169821607 0.133937557446307 0.132887200959293 0.129115707906348 0.132561387237271 0.138916121527387 0.131705762325358 0.140036379963699 0.134288950238534 0.131186021047389 0.133863362112673 0.142883372959291 0.127746309665651 0.136235602805898 0.141797052166752 0.133255415078763 4 4|0 +|/ 9865532 9866486 9866164.3 9865116 9867035 + gene protein_coding_gene FALSE TRUE AT4G17730.1|AT4G17730.2 SYP23 (syntaxin 23); t-SNARE|SYP23 (syntaxin 23) member of SYP2 Gene Family Identical to Syntaxin-23 (AtSYP23) (AtPLP) (AtPEP12-like protein) (SYP23) [Arabidopsis Thaliana] (GB:O04378;GB:O23613); similar to VAM3 (syntaxin 22), t-SNARE [Arabidopsis thaliana] (TAIR:AT5G46860.1); similar to syntaxin, putative [Brassica oleracea] (GB:ABD65611.1); contains InterPro domain Target SNARE coiled-coil region; (InterPro:IPR000727); contains InterPro domain Syntaxin, N-terminal; (InterPro:IPR006011); contains InterPro domain t-snare; (InterPro:IPR010989); contains InterPro domain Syntaxin/epimorphin family; (InterPro:IPR006012) 0.0310103829992778 0.454548438890294 0.660952312842539 1 0.878468283238931 18.1633467979244 0.0310103829992778 0.0126346049293233
AT1G69670_at 5.52220003799114 5.88431787848327 5.88090746146215 5.6450968191868 6.35249369344238 5.3581244022132 6.43179215399141 5.33870356528477 5.02842145596694 6.22880760285534 5.543008291446 5.41000885893185 5.83784114006986 5.82067521760273 5.37379268459591 5.86382284572764 5.49941527170623 5.14486045512151 6.00682529894326 0.193353538073964 0.196450777189959 0.194654372349084 0.196008439361573 0.196479249008526 0.198892735385189 0.195843409548021 0.201128374665547 0.216808235113575 0.195194137634352 0.191318923138189 0.191580220878195 0.202219425325087 0.194580732790893 0.193711191900817 0.191318923138189 0.213850856769291 0.206901482238752 0.198881852650837 1 1 - 26205920 26206332 26206145.818 26205694 26207639 - gene protein_coding_gene FALSE TRUE AT1G69670.1 ATCUL3B/CUL3B (Cullin 3B); protein binding / ubiquitin-protein ligase cullin, putative, contains similarity to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with members of AtBPM family and RBX1 suggesting it is part of an E3 ligase complex involved in RUB modification. similar to ATCUL3/ATCUL3A/CUL3/CUL3A (Cullin 3A), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G26830.1); similar to Os02g0746000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048114.1); similar to Cullin family [Medicago truncatula] (GB:ABE90793.1); similar to H0306F03.4 [Oryza sativa (indica cultivar-group)] (GB:CAH68237.1); contains InterPro domain Cullin; (InterPro:IPR001373) -0.0890522525665713 -0.454533908697561 0.660962352449065 1 0.878461527680091 11.4598859422929 -0.0890522525665713 0.266433880186934
AT1G03370_at 6.91993914107157 6.89684123046046 6.59292774348031 6.84650407779394 6.69377223408734 6.30213494321451 5.69053578427036 5.57700799533252 6.75587804079022 5.83372811732902 5.85402462096677 5.76779696119683 5.53214320185553 5.89156533610503 5.61327956593266 5.92881634982356 5.63011978692613 6.42670736976326 6.15729691107047 0.163565565967338 0.167457453670123 0.175226494659325 0.171916104802363 0.164617888974611 0.169057112838903 0.165803783217911 0.167700379742534 0.180019813802745 0.174564509062576 0.162016167170499 0.167907393207874 0.179274397364377 0.166575273326148 0.169053169120751 0.165710300960279 0.169665821143062 0.173246898259319 0.160605930473896 1 1|0 +|/ 834352 834768 834593.1 826569 835361 + gene protein_coding_gene FALSE TRUE AT1G03370.1 C2 domain-containing protein / GRAM domain-containing protein similar to C2 domain-containing protein / GRAM domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G50170.1); similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03000.2); similar to Os06g0297800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057439.1); similar to Os08g0492400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062120.1); similar to no pollen; Osnop [Oryza sativa (japonica cultivar-group)] (GB:AAU09489.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841); contains InterPro domain GRAM; (InterPro:IPR004182) -0.0403286643991936 -0.454472687408651 0.661004653966995 1 0.878433066163868 12.4797200631144 -0.0403286643991936 0.0831928321060885
AT3G10210_at 6.54089867488652 6.7187852325489 6.54943776769536 6.62274581192817 7.5326019027938 6.58817088596949 6.44303701707877 6.58170972814218 5.59804481059961 5.68618591957264 5.54715044172378 5.50734630151818 5.23964460438326 6.01485573007195 5.47439586890802 5.80861633690867 5.44442384161356 5.34337410103372 5.74794424440543 0.251109381139412 0.250974796008323 0.249181955842566 0.245202805519338 0.255851719166749 0.260143563757658 0.254582678098387 0.241283321318912 0.277481575778466 0.242188360147802 0.248562259511754 0.245776028358831 0.245866053841548 0.252651695297621 0.248576355239576 0.24340967055 0.267858667603179 0.251147122234741 0.241283321318912 3 3|0 -|/ 3160453 3161429 3160900.1 3160242 3161619 - gene protein_coding_gene FALSE TRUE AT3G10210.1 similar to Rho-GTPase-activating protein-related [Arabidopsis thaliana] (TAIR:AT4G35750.1); similar to Cellular retinaldehyde-binding/triple function, C-terminal [Medicago truncatula] (GB:ABD28324.1); contains InterPro domain Cellular retinaldehyde-binding/triple function, C-terminal; (InterPro:IPR001251) 0.0611078370050986 0.454190382513978 0.661199732244957 1 0.878301870889556 12.3096071583618 0.0611078370050986 0.168512752016666
AT3G10940_at 8.1286580793965 8.0004337010721 8.57343648348499 8.57484808902273 8.47484941551047 8.08279531478972 10.1895333833006 9.89514394156814 8.34392527097207 9.58671957262013 9.45258003896294 9.30702929335746 9.31063617004583 9.6441460013502 9.37660729186352 9.8602457228962 9.70092304794237 9.76217529580177 9.09124167250453 0.119602041304873 0.120060952509166 0.135305244529100 0.124087292311611 0.120267484930461 0.125828820260597 0.127811963249736 0.125901014857930 0.141761041473316 0.118668729834345 0.121833268833227 0.124408764475088 0.121009973453682 0.124669740735074 0.123222395254105 0.119634295570226 0.122562688678104 0.126196638689127 0.121612901648311 3 3|0 -|/ 3422276 3422955 3422528 3422083 3423450 - gene protein_coding_gene FALSE TRUE AT3G10940.1 protein phosphatase-related similar to SEX4 (STARCH-EXCESS 4), protein tyrosine/serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52180.2); similar to Os12g0112500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065974.1); similar to dual-specificity protein-like phosphatase 3 [Zea mays] (GB:ABA02564.1); similar to Os11g0113100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065571.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) -0.0412312991102022 -0.454189046562927 0.661200655478577 1 0.878301250218263 18.0195064825897 -0.0412312991102022 0.0876987774719331
AT2G17440_at 5.42235276278137 5.27523902573278 5.35068523393833 5.557277070893 6.4073790336355 5.22054578426001 5.62713172092473 4.75517347558113 5.50005625964707 4.5418621356173 4.61410825936701 4.53458320005642 4.36182717501336 4.16310823825437 4.09765374799027 4.58569921431035 4.43152459966861 4.18126788208812 4.68349517847025 0.236253454907141 0.228014613875075 0.229079074862777 0.232101714030692 0.233705870652464 0.238526405834414 0.229137559564104 0.234282825149915 0.262692458862606 0.229686459060579 0.236965099320621 0.232467459949238 0.231752967930551 0.233187635500405 0.235332946416829 0.230422855020159 0.228842935570066 0.234507733946370 0.228014613875075 2 2|0 +|/ 7579799 7580171 7579984.5 7578222 7580881 + gene protein_coding_gene FALSE TRUE AT2G17440.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT4G35470.1); similar to PSR9 [Brassica nigra] (GB:AAM10777.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) -0.0866260586123014 -0.453865173808703 0.661424491771555 1 0.878150832864912 10.0918193788876 -0.0866260586123014 0.258611478093032
AT1G26640_at 7.74217618089217 7.34763968584291 7.24687769533551 7.06345967377799 7.44173851010554 7.29983619735918 7.52148391527009 7.00459191118849 6.82168455898126 6.76192930017704 7.28358558146407 7.06832268522978 6.4282513289473 7.24979017481865 7.3801444898669 6.9656773166178 6.79043494739472 6.73764374802800 6.66775759909413 0.162130623213305 0.164428088687206 0.160559192279070 0.157302788262100 0.160461614637315 0.160237353478756 0.163068671721529 0.160832280908854 0.171774189892008 0.166236542567071 0.158789077935049 0.155749445838875 0.158143397951068 0.158568759034305 0.164858049431405 0.160486951402616 0.158380090759149 0.166626003021270 0.164068727414671 1 0|1 /|- 9207616 9208763 9208305.4 9207375 9209888 - gene protein_coding_gene FALSE TRUE AT1G26640.1 aspartate/glutamate/uridylate kinase family protein similar to hypothetical protein [Cicer arietinum] (GB:CAD59684.1); similar to Os01g0764600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044343.1); contains InterPro domain Aspartate/glutamate/uridylate kinase; (InterPro:IPR001048); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Fosfomycin resistance kinase FomA; (InterPro:IPR012065) 0.0482646135706173 0.452519292563258 0.662355047653247 1 0.877526851566667 14.2026946896198 0.0482646135706173 0.119472260860947
AT4G15415_at 6.90039090665916 6.85173007841431 6.34008136427337 6.54984901604253 7.20651473038761 6.97239355269798 6.8674351269705 7.14114360899744 6.1391958593639 5.9464578284601 6.28384145618995 6.05728826289328 6.72169528337318 6.48945709089787 5.80036860303798 6.45179227381589 6.11830228721982 6.12600668465884 5.9352817216625 0.197089199577304 0.201250754884909 0.208435229900716 0.200315339330664 0.19471380991489 0.204279659466206 0.195714582595298 0.19471380991489 0.208379019424556 0.205633572431922 0.196460964093506 0.199878381034436 0.200400765140588 0.207731540483070 0.199167232825747 0.195977842826717 0.222591007264508 0.197888931366239 0.195008081278760 4 4 + 8818706 8819308 8819021.364 8817031 8819693 + gene protein_coding_gene FALSE TRUE AT4G15415.1|AT4G15415.2 serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B' (B'gamma) Identical to Serine/threonine protein phosphatase 2A 59 kDa regulatory subunit B' gamma isoform (PP2A, B' subunit, gamma isoform) (AtB' gamma) (B'GAMMA) [Arabidopsis Thaliana] (GB:Q8RW96;GB:O04377;GB:O23394); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT3G21650.1); similar to protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G26020.2); similar to serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative [Arabidopsis thaliana] (TAIR:AT1G13460.2); similar to H0811E11.3 [Oryza sativa (indica cultivar-group)] (GB:CAC09487.2); similar to protein phosphatase 2A regulatory subunit B' [Zea mays] (GB:AAY24686.1); similar to Os03g0844500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051871.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Protein phosphatase 2A, regulatory B subunit, B56; (InterPro:IPR002554) 0.0380751292610196 0.452192490807518 0.662581095187284 1 0.877375604249154 12.9852285293502 0.0380751292610196 0.0726210041476508
AT1G12680_at 6.01231144620456 6.63122196234799 5.99176052906627 6.2347225702801 6.72757918263845 6.64450216585838 6.18769545123351 6.4501690687076 6.1638640399316 6.08619748735579 6.25000238623317 5.99580332077116 6.44628565679595 6.45608308641232 5.62999197873268 6.25385481917557 6.27935721846234 5.9145683878084 6.15078170754592 0.182084259249778 0.176742722045856 0.187566925521176 0.183871232925514 0.180870650242926 0.182302714888155 0.176742722045856 0.183076553130121 0.181674737881825 0.187822172409929 0.188462385484039 0.176742722045856 0.177628207996099 0.182651813296886 0.177418621917819 0.176742722045856 0.182870879132208 0.181880990286377 0.182653422813633 1 1 - 4320121 4320807 4320364.636 4319884 4322943 - gene protein_coding_gene FALSE TRUE AT1G12680.1 PEPKR2 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 2); kinase similar to PEPKR1 (PHOSPHOENOLPYRUVATE CARBOXYLASE-RELATED KINASE 1), kinase [Arabidopsis thaliana] (TAIR:AT1G12580.1); similar to CPK29 (calcium-dependent protein kinase 29), calcium- and calmodulin-dependent protein kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G76040.2); similar to putative calcium-dependent protein kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD17520.1); similar to Os09g0466900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063421.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0494602875126173 0.452181717296955 0.662588547805164 1 0.877370619920623 12.5034241812471 0.0494602875126173 0.124536245634674
AT1G71350_at 5.24881039903576 5.73170003791386 5.42701465219707 5.61573859700978 5.46217192353796 5.74086875131391 4.92471310312845 6.03688471278794 5.23568299173543 4.94428522307343 4.59244702845155 4.8525417826004 5.01796449286116 5.25874838076526 4.53039965167861 5.27631544274133 4.92670115634573 4.36639722617647 5.05236488620351 0.232448953693212 0.228124579364801 0.232817660081961 0.228124579364801 0.236801940069050 0.232619948987439 0.231654113194875 0.233694211739485 0.232067424087499 0.23599888633201 0.228627391048979 0.232112890218178 0.228403005528517 0.229139213571483 0.237392133355814 0.231714433496508 0.233611821614637 0.228877505234642 0.228124579364801 1 1 - 26892251 26892773 26892518.182 26892070 26894893 - gene protein_coding_gene FALSE TRUE AT1G71350.1 eukaryotic translation initiation factor SUI1 family protein similar to pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G09150.1); similar to hypothetical protein LOC395035 [Xenopus tropicalis] (GB:NP_989398.1); similar to Ligatin (GB:Q5RA63); similar to Os02g0557600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047140.1); contains InterPro domain Uncharacterized domain 2; (InterPro:IPR004521); contains InterPro domain Translation initiation factor SUI1; (InterPro:IPR001950); contains InterPro domain PUA; (InterPro:IPR002478) -0.0744167770016914 -0.451542114200249 0.663031066788882 1 0.87707491175369 10.4885546532189 -0.0744167770016914 0.217760036908727
AT3G20720_at 6.57938650248503 6.65183576075161 6.63870293866894 7.12421571965563 6.79928129831708 5.98814410501061 6.65307589492071 6.33689657392277 5.74017870487939 6.25480706179396 5.8506888917042 6.33182072223676 6.03764584307104 6.46079348090741 5.99606786127032 6.38504228680839 5.64128614164935 5.36293637637567 5.90541516739217 0.242732596046269 0.228049044898715 0.233878364056857 0.225445902802552 0.226797879558068 0.233593575952853 0.229147176222652 0.223765750849443 0.247164665561379 0.221822847427666 0.225303494459297 0.226607232689166 0.229991219267063 0.229859382108294 0.222013572797141 0.221870976085874 0.244529479073376 0.246671131683373 0.221822847427666 3 3 + 7246062 7246683 7246458.455 7239914 7247011 + gene protein_coding_gene FALSE TRUE AT3G20720.1 similar to Os04g0628600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053961.1); similar to OSJNBa0089N06.9 [Oryza sativa (japonica cultivar-group)] (GB:CAE04248.3); similar to unnamed protein product; gene_id:MOE17.2 unknown protein [Medicago truncatula] (GB:ABE93163.1); contains domain SUBFAMILY NOT NAMED (PTHR22774:SF4); contains domain UNCHARACTERIZED (PTHR22774) 0.0618861107703783 0.451056509351887 0.663367133048483 1 0.87685066715667 12.5839851051456 0.0618861107703783 0.172958112602304
AT3G63190_at 9.6753306193038 9.41762700249158 8.88411001080907 8.90068121246423 9.71754655727383 9.11846035654668 9.86199325054977 9.7526313206591 8.99401772750223 9.64344786365958 9.670888430442 10.17580261532 9.75516007944146 9.6902230691709 10.4516300969911 9.81963025058048 9.57172689113655 9.5622446120421 9.59022180514956 0.099887430195226 0.099887430195226 0.117811968199617 0.107250239075953 0.100080421237288 0.107024038104131 0.100757313274105 0.102813824089806 0.124052385387967 0.099887430195226 0.104872129537223 0.099887430195226 0.1002670193165 0.109929410261212 0.101234249198939 0.104356246126457 0.104638234923629 0.106343216714148 0.099887430195226 3 3|0 -|/ 23354602 23355198 23354824.3 23353557 23355748 - gene protein_coding_gene FALSE TRUE AT3G63190.1 ribosome recycling factor, chloroplast, putative / ribosome releasing factor, chloroplast, putative Identical to Ribosome recycling factor, chloroplast precursor (Ribosome-releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) (RRF) [Arabidopsis Thaliana] (GB:Q9M1X0;GB:Q93V42); similar to ribosome recycling factor family protein / ribosome releasing factor family protein [Arabidopsis thaliana] (TAIR:AT3G01800.1); similar to Ribosome recycling factor, chloroplast precursor (Ribosome-releasing factor, chloroplast) (RRF) (CpFrr) (RRFHCP) (GB:P82231); contains InterPro domain Ribosome recycling factor; (InterPro:IPR002661) -0.0468809452204157 -0.450722251502226 0.663598505292829 1 0.876696445351918 19.0392437351344 -0.0468809452204157 0.114471450273175
AT3G07200_at 6.33176682097101 6.55765532824416 6.283262111617 6.4179252213669 6.66949521334713 6.79792584840619 6.5981005816406 6.61683391519686 6.11107037277886 6.20114202666701 6.43936997695481 6.2678876825232 6.35220921487918 6.28859243099551 6.46982082300308 5.71081228752548 6.62533527922526 6.18935348983983 6.40930150413001 0.231045929870703 0.227930981780326 0.231492496746777 0.232370623574895 0.223328570736544 0.227727260636318 0.22498912448722 0.228927466402136 0.237583540772559 0.244177137683465 0.223328570736544 0.223328570736544 0.224862786979087 0.233318650414734 0.223328570736544 0.229028974174882 0.228347765869396 0.23599699009286 0.227653494324472 3 3 + 2291349 2292065 2291737.091 2290773 2292498 + gene protein_coding_gene FALSE TRUE AT3G07200.1|AT3G07200.2 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G48655.3); similar to Os01g0919500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045211.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD08744.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0342404753820724 0.449409925781466 0.664507261217244 1 0.87609200716385 12.8008342714205 0.0342404753820724 0.0507511050658167
AT4G36250_at 9.15898450931985 9.19347742476706 8.86570086516827 8.7433087844743 9.69230435247155 9.43089362505864 9.8158129289672 9.5145430131363 9.4803751663253 9.44038463714754 10.087168150242 10.1527085889480 9.19185495168185 9.7500295959818 9.7490173549551 9.45800084171297 9.2402766052944 9.73695312987778 9.15198951013436 0.125499663419256 0.116108913107578 0.124080100000109 0.123688838405298 0.125427179314392 0.127894456920544 0.123916065144902 0.127341546610642 0.140020234701859 0.117320474092547 0.116659198881266 0.120365092931952 0.120404111583072 0.120578073471019 0.120181861672772 0.119783862304093 0.129753271160371 0.12485524350686 0.124505119402992 4 4|0 +|/ 17152401 17153344 17152920.8 17150872 17153581 + gene protein_coding_gene FALSE TRUE AT4G36250.1 ALDH3F1 (ALDEHYDE DEHYDROGENASE 3F1); 3-chloroallyl aldehyde dehydrogenase/ aldehyde dehydrogenase (NAD) Aldehyde dehydrogenase Identical to Aldehyde dehydrogenase 3F1 (EC 1.2.1.3) (ALDH3F1) [Arabidopsis Thaliana] (GB:Q70E96;GB:O65516); similar to ALDH3H1 (ALDEHYDE DEHYDROGENASE 4), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G44170.2); similar to Aldehyde dehydrogenase [Medicago truncatula] (GB:ABE89643.1); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) 0.037757742773294 0.448798245015582 0.664931036590701 1 0.875810847990961 18.8160453163566 0.037757742773294 0.0724495191005766
AT1G70480_at 7.48067693011236 7.78963416587976 7.4330109537272 7.69254057318223 7.8176924323327 7.57150109620404 7.57880286785022 7.78726544246135 7.10254341624746 7.03913845334444 7.18986421316882 7.20266257565737 6.9023660170886 7.35979795461919 7.52177724382144 7.60000525733028 6.63964153770448 6.79660796375767 6.97543013582902 0.193864986248682 0.19103688675595 0.191515749137820 0.196750638039755 0.196788711821557 0.196644301899960 0.198384977172365 0.199180549873152 0.19819855321357 0.193262508021275 0.192666245418253 0.193083139828576 0.189890623280864 0.190745793964337 0.196835344774703 0.187663754358506 0.208464703555851 0.194378509461756 0.187563377659708 1 1|0 +|/ 26566729 26567184 26567068.1 26565487 26567472 + gene protein_coding_gene FALSE TRUE AT1G70480.1|AT1G70480.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G23560.1); similar to OBP32pep (GB:AAA79703.1); contains InterPro domain Protein of unknown function DUF220; (InterPro:IPR003863) 0.0410722112693975 0.448548032391622 0.66510442175147 1 0.875695942576467 14.7392043979856 0.0410722112693975 0.0894002831796208
AT4G23850_at 11.1538914857864 11.1430251847621 11.2164275573861 11.1488643464329 10.8520917427995 10.8243597417065 10.7076585980417 10.8273464111557 11.2741242541287 10.8335603451388 11.2184840551904 10.9997734557620 10.8703590832872 11.0616259057131 10.7449928266219 11.1947855288697 10.6649407220664 10.7860151773694 10.6901036220368 0.0732463689014156 0.0715968083783751 0.0740231318308938 0.0722049096950676 0.0701851197558505 0.0711509604604224 0.0724112991419603 0.0715036044284128 0.0734105197962181 0.0712340075828261 0.0697041876058097 0.0697041876058097 0.0697251703640578 0.074272876863147 0.0708759199345715 0.0697041876058097 0.0736629809905192 0.0725981002502137 0.069915223537639 4 0|4 /|- 12403904 12404245 12404079.778 12403477 12408345 - gene protein_coding_gene FALSE TRUE AT4G23850.1 long-chain-fatty-acid--CoA ligase / long-chain acyl-CoA synthetase similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT4G11030.1); similar to LACS2 (LONG-CHAIN ACYL-COA SYNTHETASE 2) [Arabidopsis thaliana] (TAIR:AT1G49430.1); similar to long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative [Arabidopsis thaliana] (TAIR:AT1G64400.1); similar to acyl-CoA synthetase [Brassica napus] (GB:CAA64327.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00145.1); similar to ACS-like protein [Gossypium hirsutum] (GB:ABA00144.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0312407238683472 0.448113358233304 0.665405680332038 1 0.8754964714702 21.9218172175729 0.0312407238683472 0.0243368641494995
AT1G15200_at 7.06801127591056 6.01031692952389 7.02031594973115 6.4194712467971 7.57752194167068 6.13562789580248 7.34607275882155 6.3312879876863 6.92564158082363 7.35939886755011 6.99042755553167 7.04134963950806 6.72019788079026 7.18031718696105 6.73630913938461 7.13729414741232 6.47230634734029 6.83075137999409 7.38923346375836 0.188647757812016 0.187544858459270 0.186758896694779 0.183050805578778 0.187648178438071 0.189568010906422 0.183709756244903 0.192783797953667 0.187815238281438 0.180405263559791 0.184210243030495 0.182991483116619 0.178999416332626 0.184492212436136 0.178073052857248 0.182985501032607 0.179888059284463 0.189188775149032 0.187036327626409 1 1|0 -|/ 5228517 5229412 5228917.333 5228331 5231056 - gene protein_coding_gene FALSE TRUE AT1G15200.1 protein-protein interaction regulator family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07258.1); contains InterPro domain Pinin/SDK/memA protein; (InterPro:IPR006786) -0.118413395290313 -0.447492138158364 0.665836339170575 1 0.875211713858829 13.7952668134060 -0.118413395290313 0.370699823723780
AT1G32210_at 9.59642110104075 9.78968910055443 9.60626359832946 9.5386969331316 9.57619708613049 8.96197214504128 8.96679032384717 9.06367358976057 9.31270499206425 8.69131520904617 9.02708383187406 9.3460639723071 8.5568963343406 9.07577907439369 9.1229677210523 8.62272436017536 8.09298836687536 9.12243201600223 8.5309122125858 0.124190986462604 0.124190986462604 0.131078941506847 0.128699224978265 0.126872443874868 0.13475737051715 0.127626880668024 0.133488463613598 0.138409596585068 0.132403315442403 0.124190986462604 0.125815017347463 0.129820502841652 0.124209222664020 0.128026112698783 0.128314194519861 0.149706400493968 0.128095033471207 0.129792790635125 1 1|0 -|/ 11606030 11607578 11606813.2 11605837 11607748 - gene protein_coding_gene FALSE TRUE AT1G32210.1 ATDAD1 (DEFENDER AGAINST APOPTOTIC DEATH 1) Encodes protein involved in suppression of apoptosis. Complements a mammalian apoptosis suppressor mutation. Identical to Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit DAD1 (EC 2.4.1.119) (Oligosaccharyl transferase subunit DAD1) (Defender against cell death 1) (DAD-1) (AtDAD1) (DAD1) [Arabidopsis Thaliana] (GB:Q39080); similar to defender against cell death 2 (DAD2) [Arabidopsis thaliana] (TAIR:AT2G35520.1); similar to Defender against death DAD protein [Medicago truncatula] (GB:ABE94463.1); contains InterPro domain Defender against death DAD protein; (InterPro:IPR003038) 0.0462642001264955 0.447447244714961 0.665867466479454 1 0.875191149950178 18.2453852001593 0.0462642001264955 0.113291530539816
AT3G15380_at 5.00405297483275 5.51240254674374 5.23370602225762 5.03815976499125 5.90894607802748 5.85711886784538 5.88715823483656 5.82373255829795 5.66037483942199 4.98179421049396 5.35342366612966 5.31260839079024 5.47294940375765 5.60152066949703 5.57499208041174 5.23408962077236 4.64062681783231 5.49879371082648 5.47733682570774 0.227237470209607 0.225438055242863 0.226408020155998 0.225166665158922 0.2259984621613 0.232121729563952 0.233682697935355 0.225770442728466 0.23578515942973 0.234085413482881 0.226357099932414 0.225626538936154 0.225296199942327 0.229774797002537 0.229173887443645 0.230841295919875 0.248618931542284 0.22905914696853 0.231696975999469 3 3|0 +|/ 5195670 5196377 5196005.3 5193235 5196598 + gene protein_coding_gene FALSE TRUE AT3G15380.1 choline transporter-related similar to choline transporter-related [Arabidopsis thaliana] (TAIR:AT4G38640.1); similar to H0901F07.12 [Oryza sativa (indica cultivar-group)] (GB:CAJ86275.1); similar to Os04g0681400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054289.1); similar to H0901F07.15 [Oryza sativa (indica cultivar-group)] (GB:CAJ86278.1); contains InterPro domain Protein of unknown function DUF580; (InterPro:IPR007603) -0.0421984878015141 -0.447178970505449 0.666053491274292 1 0.875068305031868 10.8878067160841 -0.0421984878015141 0.0953162878312232
AT2G44525_at 8.1130513958451 8.21423182876725 7.7796851776554 7.97904915124036 8.24322737312542 7.72935419162431 8.21473798336702 8.21208594616094 6.97258881794895 7.26611133149457 7.2332124155889 7.46261214076157 7.29719030879964 7.37807556833905 7.2848457019891 7.3700802578875 7.28728247748135 7.40624530559738 7.26871555921031 0.190109769735403 0.192757465208763 0.190514234158478 0.199465134687421 0.193737005622482 0.207285344397863 0.193687744708963 0.196336171410347 0.225235193034941 0.187641418295473 0.194326922411184 0.195797648095541 0.190287519207149 0.194814923311825 0.203589949445587 0.190907067759785 0.209741672303536 0.194918628239656 0.191449108627836 2 2|0 +|/ 18389276 18390362 18389851.8 18389146 18390587 + gene protein_coding_gene FALSE TRUE AT2G44525.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G60150.1); similar to putative nuclear protein [Oryza sativa (japonica cultivar-group)] (GB:AAL86478.1); contains InterPro domain Protein of unknown function DUF498; (InterPro:IPR007523) -0.0424466813097077 -0.446007337174356 0.666866202698362 1 0.874532625595153 15.3152186767766 -0.0424466813097077 0.0969810678780581
AT2G41880_at 6.10512867742635 6.42636842296925 6.43954757492502 6.36959926859038 6.47939905527043 6.21808882845144 6.816648898139 6.5328714866414 6.64116742867021 6.12992381920639 6.78827680826152 6.82253050153809 6.14950185710456 6.6396847109954 6.21643609641816 6.53362702005961 6.20630636448237 6.8150836299811 6.26981331300419 0.204462069446734 0.197341170555027 0.220895931883714 0.198362503136105 0.197389208043361 0.210761084655786 0.199966053882108 0.203542974676589 0.210793282935164 0.213275826740017 0.203002500176789 0.195073260934548 0.201876748339201 0.205936918021251 0.202015781957141 0.196534548896664 0.206610138069571 0.210482294559159 0.195073260934548 2 2|0 +|/ 17483178 17484127 17483539.6 17481697 17484301 + gene protein_coding_gene FALSE TRUE AT2G41880.1 GK-1 (GUANYLATE KINASE 1); guanylate kinase Guanylate kinase. Involved in nucleotide metabolism. similar to AGK2 (GUANYLATE KINASE-ENCODING GENE 1) [Arabidopsis thaliana] (TAIR:AT3G57550.1); similar to guanylate kinase [Lilium lon (GB:AAG12252.1); contains InterPro domain Guanylate kinase/L-type calcium channel region; (InterPro:IPR008145); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Guanylate kinase; (InterPro:IPR008144) 0.0404334985800792 0.445367874334482 0.667309966396761 1 0.874240822107912 12.8576560568343 0.0404334985800792 0.087713348920946
AT1G29660_at 10.7624006043138 11.0478278211841 10.1173408078499 10.3015153070215 11.4695631552561 11.2280503279004 11.6911300134781 11.8027856858539 11.7064033877505 11.5885662234384 12.7119208293365 12.6902007060103 12.6321297111700 12.4905009875984 12.5159835121437 11.7002049751864 10.8635462887499 12.1889444315022 11.9639414310633 0.078920732788104 0.0767258502646278 0.084569415027382 0.0787079687360228 0.0748482833134732 0.081540306458351 0.0737943880033737 0.0737943880033737 0.0756643115840396 0.0745640972295523 0.0738356522932318 0.0745632697397605 0.0764807123590145 0.0737943880033737 0.076196075252377 0.0737943880033737 0.0803921493486926 0.0773921922772458 0.0759299285746177 1 1|0 +|/ 10372730 10373559 10373077.1 10371825 10373752 + gene protein_coding_gene FALSE TRUE AT1G29660.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29670.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.0378550244528548 -0.445086319892747 0.6675053986521 1 0.874112467748713 23.0411513541720 -0.0378550244528548 0.07467150871527
AT3G63490_at 10.9581024734959 10.9263133312310 10.654741790343 10.6244161967314 11.0432705577627 10.8710520555164 11.0472711161095 10.9961854769910 11.3654439857744 11.2694832708878 11.4042499665837 11.5565991867705 11.238345243454 11.3437537777977 11.7715446683672 11.5414440158758 11.2967208688880 11.0946300790528 11.2219634511450 0.0770073009339822 0.0722472460608358 0.0726110959397249 0.0750022261829183 0.0717104410897725 0.080840877516158 0.0717104410897725 0.0762495437777405 0.0779410732686298 0.0727633318173909 0.072830568948137 0.0722968271840175 0.0717104410897725 0.0743285588231479 0.0737881026577183 0.0717978408163997 0.0747670011257447 0.0769384573454795 0.0724947336473672 3 3|0 +|/ 23455778 23456961 23456406.5 23455178 23457330 + gene protein_coding_gene FALSE TRUE AT3G63490.1|AT3G63490.2 ribosomal protein L1 family protein Identical to 50S ribosomal protein L1, chloroplast precursor (CL1) (RPL1) [Arabidopsis Thaliana] (GB:Q9LY66;GB:Q9LWB4); similar to ribosomal protein L1 family protein [Arabidopsis thaliana] (TAIR:AT2G42710.1); similar to 50S ribosomal protein L1, chloroplast precursor (CL1) (GB:Q9LE95); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143); contains InterPro domain Ribosomal protein L1, bacterial and chloroplast form; (InterPro:IPR005878)|similar to ribosomal protein L1 family protein [Arabidopsis thaliana] (TAIR:AT2G42710.1); similar to 50S ribosomal protein L1, chloroplast precursor (CL1) (GB:Q9LE95); contains InterPro domain Ribosomal protein L1; (InterPro:IPR002143); contains InterPro domain Ribosomal protein L1, bacterial and chloroplast form; (InterPro:IPR005878) -0.0316586047277267 -0.444793079361839 0.667708970909554 1 0.87397886802844 22.2359397306648 -0.0316586047277267 0.0320030183183549
AT4G34050_at 11.5755113524804 11.6829414681010 11.6418993489235 11.8662404689113 11.4766338154999 11.3273897769061 11.8597523769536 12.1074671430081 11.6861248846339 11.5320585833133 11.6277485321134 11.5959331579429 11.7563916729480 11.7796229563980 11.6529500576656 11.6399645393313 11.6162141669322 11.8479795755343 11.3831482009444 0.0642351125458846 0.0605861639669654 0.0657075078297872 0.0605861639669654 0.062923536968547 0.0642870859455088 0.0650787191445528 0.0659233709824483 0.0643608529690972 0.062097201684699 0.0605861639669654 0.0605935894895875 0.0605861639669654 0.0631516243107839 0.0610343410434662 0.0605861639669654 0.0644367256556243 0.062552277509481 0.0609622874425383 4 4|0 +|/ 16311185 16311944 16311655.1 16310780 16312221 + gene protein_coding_gene FALSE TRUE AT4G34050.1|AT4G34050.2 caffeoyl-CoA 3-O-methyltransferase, putative Identical to Probable caffeoyl-CoA O-methyltransferase At4g34050 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) [Arabidopsis Thaliana] (GB:O49499;GB:Q8L989); similar to caffeoyl-CoA 3-O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G26220.1); similar to putative caffeoyl-CoA O-methyltransferase protein [Isatis tinctoria] (GB:AAZ95245.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935)|Identical to Probable caffeoyl-CoA O-methyltransferase At4g34050 (EC 2.1.1.104) (Trans-caffeoyl-CoA 3-O-methyltransferase) (CCoAMT) (CCoAOMT) [Arabidopsis Thaliana] (GB:O49499;GB:Q8L989); similar to caffeoyl-CoA 3-O-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT4G26220.1); similar to putative caffeoyl-CoA O-methyltransferase protein [Isatis tinctoria] (GB:AAZ95245.1); contains InterPro domain O-methyltransferase, family 3; (InterPro:IPR002935) -0.0362769365906292 -0.444738866778186 0.667746609330662 1 0.873954178070047 23.3039183715090 -0.0362769365906292 0.0660122581088987
AT3G58460_at 7.8856793711496 7.37058160583097 7.03480008578286 7.38509158574358 7.80435310072505 6.57596179801764 7.06242300240486 6.81871987916875 6.692348821419 5.94017509829585 6.03035473342892 6.13915921116222 6.0024080604495 5.82003454374605 6.3770034336992 6.0110054164938 6.16389052289313 6.01425682031488 5.80407532680627 0.246139613069092 0.241490241275255 0.258841005758283 0.246461477464997 0.249562934193792 0.251015046079282 0.251983933052912 0.246724702206052 0.252753696523210 0.240130663790294 0.240130663790294 0.240130663790294 0.243542952242607 0.245654752130776 0.247836170085553 0.240130663790294 0.263599499860329 0.245216993277188 0.243705479362141 3 3|0 -|/ 21634470 21635554 21635138 21634156 21637425 - gene protein_coding_gene FALSE TRUE AT3G58460.1 rhomboid family protein / ubiquitin-associated (UBA)/TS-N domain-containing protein Identical to Protein At3g58460 [Arabidopsis Thaliana] (GB:Q8LB17;GB:Q8L7A1;GB:Q9M2H0); similar to rhomboid family protein / zinc finger protein-related [Arabidopsis thaliana] (TAIR:AT3G17611.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP68399.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.0800341557357551 -0.444084070681457 0.668201295981705 1 0.873656191310848 13.3498498910765 -0.0800341557357551 0.242051840218784
AT1G67840_at 9.28827020896525 9.18936577995576 9.24857664475537 9.17794744661686 9.49392625070873 9.3534071094187 9.78026960918103 9.58221233981574 9.83488884108066 9.9855891205362 10.0717363904776 9.89437904915283 9.82598257171807 9.9812067610587 9.83737655584383 10.1094632190748 9.95509211988515 10.0434033192604 9.84898277296704 0.081802951213732 0.0756824557054319 0.077107044262355 0.0756751143326679 0.0793586023995251 0.0791329933900115 0.0798170890373657 0.0763916016200508 0.0831443249357783 0.0796317391426633 0.0791678817899599 0.0783682557719733 0.0795953476623327 0.084499355425588 0.0810760920707933 0.0763791822433961 0.0777499461510645 0.0809616541418431 0.0787230672816298 1 1 + 25439704 25440463 25440103.909 25437765 25440738 + gene protein_coding_gene FALSE TRUE AT1G67840.1|AT1G67840.2 ATP-binding region, ATPase-like domain-containing protein similar to ATP-binding protein [Populus trichocarpa] (GB:ABG37640.1); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594)|similar to ATP-binding re (GB:ABA97492.1); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082) -0.0332776840784446 -0.443505112618574 0.668603441579324 1 0.873393065060993 19.3165720452623 -0.0332776840784446 0.0469941022544682
AT3G51500_at 4.91189019305298 5.44749298145082 5.56254240614847 5.52319649327274 6.30201418780838 5.9489235854963 6.04124592584855 6.16237452525421 5.24456090374665 5.73550703108612 5.99580784015709 5.35869711981234 5.93074772300071 5.65517146012825 5.382162277511 6.02368310299293 5.29529897443808 4.94842093662569 6.04661472567344 0.182522396003260 0.191649468027558 0.190949429864945 0.185136800221895 0.183606628277977 0.193725531937129 0.186370950144135 0.187135066924459 0.199400328752083 0.185550654021809 0.180106442635117 0.181126406647812 0.185934101075746 0.188329120917869 0.198402930188479 0.183338544218366 0.197047416662341 0.205011654566782 0.181638610377433 3 3 + 19119346 19119631 19119472.636 19119113 19119869 + gene protein_coding_gene FALSE TRUE AT3G51500.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15397.1); similar to Os02g0193500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046170.1) 0.0458030271388457 0.443227366340306 0.668796404869141 1 0.873266950174585 11.3621148203759 0.0458030271388457 0.113184042218932
AT3G44200_at 6.80609784100513 6.98208895800708 6.81073819908428 6.97624029050309 7.07023776078478 7.02825924359087 6.86493560902655 6.92284881407299 7.16832745480137 7.05057517761436 7.3760038043898 6.72332528168658 7.3320895849938 7.14948549526086 6.82949314165342 6.7847756987441 6.58407172449791 6.96705760464645 7.1148981607892 0.184511489709914 0.184125575954702 0.179106538172581 0.182293073216757 0.189170366147265 0.183533038240199 0.178606033143451 0.179624801828142 0.188015947549709 0.188734283077137 0.178205079068728 0.179468201681819 0.178205079068728 0.185983743229924 0.193457062413986 0.180726115392869 0.194619658167202 0.203687901469721 0.181333468124623 3 3 + 15921776 15922324 15921997.455 15917427 15922461 + gene protein_coding_gene FALSE TRUE AT3G44200.1 kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G04810.2); similar to Os05g0440800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055669.1); similar to putative LSTK-1-like kinase [Oryza sativa (japonica cultivar-group)] (GB:BAB63817.1); similar to Protein kinase [Medicago truncatula] (GB:ABD32759.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0328015355606885 -0.442955297453967 0.66898544899618 1 0.873143486070056 13.9724582010356 -0.0328015355606885 0.0436015168902341
AT4G38100_at 5.64143262147624 6.08160123826039 5.69206981574529 5.68932463188354 5.45172044493988 5.19229883651314 5.99382446524552 6.35604089977167 4.18957417148639 4.5822102824191 4.68207777407169 5.61228753336714 5.30599775900469 4.70737951835707 5.40250351420197 4.93420699352322 5.04433944263659 4.56537081288768 4.52086681007889 0.228818736512971 0.220138990151087 0.222841399899915 0.235601987469756 0.220820666948922 0.223830622680353 0.220138990151087 0.224512003690949 0.244334266035789 0.229929773119565 0.227976090802661 0.22322151024813 0.22217888665661 0.227934377826725 0.236368428017626 0.220138990151087 0.242536385487396 0.230062184496012 0.222345204928464 4 4|0 -|/ 17887183 17888138 17887513.4 17886863 17888198 - gene protein_coding_gene FALSE TRUE AT4G38100.1 threonine endopeptidase similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01150.1); similar to Os06g0217700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057152.1); similar to Os09g0465800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063416.1); similar to unknown (GB:AAB00107.1); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353) 0.0445076449634028 0.441282230782483 0.6701485085584 1 0.872385838915521 10.4936162058133 0.0445076449634028 0.108384767814213
AT4G21810_at 8.46108135830726 8.98559866179747 8.75374169954152 8.58199578121434 9.77053081272502 8.9913439564612 8.57806682075327 8.8022589312046 8.54587347831365 8.68708945745177 8.78216885040087 8.3707174156478 8.90662216667454 8.8642026423871 8.01585044131968 8.69419215327608 8.10244401480106 8.39299227704332 8.9102810497098 0.184012479636421 0.181375383136033 0.192091369888041 0.201323680268704 0.191822434186912 0.189158029790973 0.185100419103004 0.183766995130472 0.210590327557996 0.180449461908897 0.179891858915163 0.180931495410620 0.191135403880862 0.184467214922347 0.194405453681709 0.184077547829535 0.192154858644497 0.191060611355564 0.182614846996707 4 4|0 -|/ 11575432 11576597 11575846.3 11575108 11577207 - gene protein_coding_gene FALSE TRUE AT4G21810.1 Der1-like family protein / degradation in the ER-like family protein Identical to Derlin-2.1 (AtDerlin2-1) (DER2.1) [Arabidopsis Thaliana] (GB:Q8VZ96;GB:O49704;GB:Q9M0L7;GB:Q9SVR6); similar to Der1-like family protein / degradation in the ER-like family protein [Arabidopsis thaliana] (TAIR:AT4G04860.1); similar to Os03g0852200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051921.1); similar to Derlin-2.2 (ZmDerlin2-2) (GB:Q4G2J3); contains InterPro domain Der1-like; (InterPro:IPR007599) 0.0596928514193011 0.441278841913574 0.670150865340187 1 0.87238430703755 17.4808589562600 0.0596928514193011 0.169735603196289
AT2G06010_at 6.05992636297554 6.03170405707266 6.18836009656851 5.93609279364708 6.89137755454295 6.74678934698005 5.98078541606678 5.96915199152018 5.042223068436 5.573630127002 4.90903661138061 4.77827580301252 5.16119665653948 4.66969989250302 4.97056248949837 5.45491783105694 5.17535162541582 4.7460006200713 5.42296341003619 0.25095571551339 0.232751611305115 0.236361907039003 0.234577724110752 0.235811676637607 0.246644149475985 0.233637802390184 0.236079345009168 0.240739356613762 0.235871887412935 0.234691819401215 0.228739524666219 0.23686188444285 0.232194243427195 0.252756862746773 0.228739524666219 0.252664473228790 0.244979412776813 0.247993806844559 2 2 + 2336843 2338319 2337760.182 2336811 2338899 + gene protein_coding_gene FALSE TRUE AT2G06010.1 ORG4 (OBP3-RESPONSIVE GENE 4) encodes a novel protein whose expression level is induced in lines overexpressing salicylic-acid (SA)-inducible Arabidopsis DNA binding with one finger (Dof) transcription factor, called OBF-binding protein 3. similar to Os04g0446200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052908.1); similar to ORG4 [Hordeum vulgare] (GB:ABF68750.1); similar to OSIGBa0140O07.13 [Oryza sativa (indica cultivar-group)] (GB:CAH67245.1) 0.0335604901929412 0.440771448009090 0.670503774850336 1 0.87215507499101 11.3902246489265 0.0335604901929412 0.0505948556235129
AT1G03150_at 7.86889924336399 8.15806725127673 8.37424511402433 8.33261345151655 9.11304646486026 8.61265102409694 8.53096256679354 8.36772924525141 8.78608768198245 8.66647812782316 8.34313044482107 8.232606394688 8.33280453348395 8.5539128993251 8.00734734611234 8.7449016338363 8.3679144785557 8.47744974221364 9.08582448497777 0.127636132959374 0.115430543248593 0.123355909717469 0.125624385141406 0.118808744054763 0.123646352885269 0.120601277132898 0.126034704269155 0.134059155299602 0.120049585686304 0.118999486709513 0.117930552161467 0.116625349258495 0.121805559450521 0.139550775981652 0.122961688049769 0.129781179978883 0.119367507657436 0.121730303667709 1 1|0 +|/ 756476 758396 757315.1 756414 758612 + gene protein_coding_gene FALSE TRUE AT1G03150.1 GCN5-related N-acetyltransferase (GNAT) family protein similar to GCN5-related N-acetyltransferase, putative [Arabidopsis thaliana] (TAIR:AT5G13780.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71298.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.043448613589252 -0.440094033088153 0.6709750742573 1 0.871849421648934 17.0340960613433 -0.043448613589252 0.104177189489337
AT3G04910_at 9.68524152182938 9.82948054253708 8.89346179237791 8.88606481861615 10.0962098535078 9.7754513240841 9.31670167798034 9.06846095190641 9.93372140030521 9.73523588930293 10.1623338628762 10.1017270564939 9.94033776890377 9.95529752536445 9.70649792649537 9.5931716096916 9.18353075275963 9.89019238937393 9.81875784958742 0.0900142410227321 0.0893405414238784 0.0928921410674584 0.09960683878114 0.0910156385038843 0.0875096193796523 0.0898898482136773 0.09238003529322 0.0912575094248235 0.0884753514884194 0.0877014762062465 0.0896781100173647 0.0915263605142333 0.0969005866221935 0.0890694626750167 0.0875096193796523 0.0932073621438006 0.090686084974308 0.0893042488643924 3 3 + 1357469 1358032 1357677.636 1354641 1358225 + gene protein_coding_gene FALSE TRUE AT3G04910.1|AT3G04910.2 WNK1 (WITH NO LYSINE (K) 1); kinase Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm. similar to WNK9 (Arabidopsis WNK kinase 9), kinase [Arabidopsis thaliana] (TAIR:AT5G28080.2); similar to mitogen activated protein kinase kinase [Oryza sativa] (GB:AAC32599.1); similar to mitogen-activated protein kinase kinase [Oryza sativa (indica cultivar-group)] (GB:ABH07431.1); similar to mitogen activated protein kinase kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83145.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to WNK9 (Arabidopsis WNK kinase 9), kinase [Arabidopsis thaliana] (TAIR:AT5G28080.2); similar to mitogen activated protein kinase kinase [Oryza sativa (japonica cultivar-group)] (GB:BAC83145.1); similar to Os07g0572800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060061.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0373882473268976 -0.43995185296027 0.671074013080664 1 0.871785326019956 19.2668213059683 -0.0373882473268976 0.0745078414470559
AT2G40660_at 7.0006929890347 7.26356383457873 6.80582769005574 6.64651291645046 7.28471085342034 6.81285530194367 7.13174845370181 6.78003801248993 6.34829535778417 6.40102963306126 6.35993289103161 6.78486903819368 6.22489261993586 6.25685444790627 6.9518097148425 6.32523660406475 6.10088362983821 6.46776060618355 6.35772179461984 0.2041231542555 0.202668384797838 0.207905380802367 0.209994324983553 0.207471363206073 0.211782221601221 0.20280558023808 0.208216711767881 0.208353906830620 0.203288584339480 0.210583082288983 0.2077223248168 0.200548326228562 0.215384566643620 0.206009549024852 0.203766227508644 0.219182964790094 0.205596310197706 0.205763262359947 2 2|0 +|/ 16974801 16975883 16975307.667 16973011 16976110 + gene protein_coding_gene FALSE TRUE AT2G40660.1 tRNA-binding region domain-containing protein similar to methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative [Arabidopsis thaliana] (TAIR:AT4G13780.1); similar to Os01g0821800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044650.1); similar to tRNA-binding protein (ISS) [Ostreococcus tauri] (GB:CAL55424.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Endothelial monocyte-activating polypeptide II precursor pro-EMAP II; (InterPro:IPR008232); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain t-RNA-binding region; (InterPro:IPR002547) -0.0457598915696382 -0.438996114512155 0.671739258001142 1 0.871354985384024 13.3672665260367 -0.0457598915696382 0.114899718573908
AT1G65280_at 7.3248858493506 7.54642418469643 7.21542855416615 7.19519545921628 7.25626079732992 7.47860201136549 6.71064100817276 7.14646976116201 7.28613517818398 6.87434255306476 7.05555879779348 7.10266155285368 7.3671800801288 7.1702815627662 6.84705144855863 7.41520765400516 7.13585159103257 6.81224510989954 7.24669569003029 0.206619299732929 0.210127140148684 0.210663790357275 0.202308716457807 0.207241022072678 0.211916084586844 0.208429555197363 0.206767824709870 0.214028479989417 0.207561862811517 0.201638734479758 0.204606363974722 0.202992666475893 0.218248326145356 0.209912063238899 0.208964713578815 0.206470089314370 0.207918486782593 0.213073242099996 1 1|0 +|/ 24251233 24252137 24251706.1 24248959 24252425 + gene protein_coding_gene FALSE TRUE AT1G65280.1 heat shock protein binding / unfolded protein binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Molecular chaperone (DnaJ superfamily) (ISS) [Ostreococcus tauri] (GB:CAL50356.1); similar to Os01g0521500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043212.1); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.040898377772046 0.438521945135051 0.672069418549754 1 0.871141811765167 14.3587280523772 0.040898377772046 0.0930111957002323
AT1G09270_at 7.30925435538584 7.56616005092861 7.37561986199114 7.48839869062655 7.17246730367525 7.12290535134668 7.56231776391636 7.27661824107195 6.72777248562643 6.85957164226183 7.297599858859 7.27649712812119 7.14253928338789 6.66600385598246 7.14098380211307 7.18919373948401 7.2117486717271 6.68673428256647 7.00728467975983 0.18377835609012 0.177681932134734 0.179779070033819 0.181473259764769 0.177500291935069 0.187571868625784 0.177326151319966 0.176613452308002 0.184579709883038 0.180951717018911 0.17923433510535 0.178852177881031 0.180993971362416 0.194798658278957 0.181903761280166 0.176613452308002 0.185784249149237 0.187854765146987 0.190032067704478 1 1 + 2996878 2997786 2997438.545 2994371 2998224 + gene protein_coding_gene FALSE TRUE AT1G09270.1|AT1G09270.2|AT1G09270.3 importin alpha-1 subunit, putative (IMPA4)|protein transporter similar to importin alpha-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G02690.1); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 2 [Capsicum annuum] (GB:AAK38727.1); similar to importin alpha 1 [Capsicum annuum] (GB:AAK38726.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652)|similar to importin alpha-2 subunit, putative [Arabidopsis thaliana] (TAIR:AT1G02690.1); similar to ATIMPALPHA3/MOS6, protein transporter [Arabidopsis thaliana] (TAIR:AT4G02150.1); similar to AT-IMP (Arabidopsis thaliana importin alpha), protein transporter [Arabidopsis thaliana] (TAIR:AT3G06720.2); similar to importin alpha 1-like [Solanum tuberosum] (GB:ABB55384.1); similar to putative importin alpha [Trifolium pratense] (GB:BAE71209.1); similar to importin alpha 1 [Capsicum annuum] (GB:AAK38726.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Importin alpha-like protein, beta-binding region; (InterPro:IPR002652) 0.0363982538241638 0.438178446348892 0.672308641074892 1 0.87098752112687 14.3298621258659 0.0363982538241638 0.0698249738599156
AT3G49720_at 8.78395906550026 8.92285022711287 8.55683735711731 8.77512763066479 8.83201203053402 8.7751843654574 9.27906439179398 9.2475111411112 9.17901075023932 8.79338315898683 9.64310157810602 9.58609364481847 9.30700510058258 9.37075327780576 9.66478295218324 8.98984670926386 8.45434528244738 9.2058046149296 8.69351589196845 0.100983902083090 0.103785171406196 0.112562574989125 0.105243696982409 0.0977087002574913 0.102334517313952 0.101769645917432 0.101883966540037 0.102512739688371 0.100590164552445 0.108598994735133 0.102280899167905 0.101805406956293 0.105553210273692 0.106437192411650 0.099969956865563 0.125819567940699 0.109151767645540 0.101709183258526 3 3|0 -|/ 18451297 18452054 18451787.3 18450988 18453183 - gene protein_coding_gene FALSE TRUE AT3G49720.1|AT3G49720.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G65810.1); similar to Os01g0144000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042001.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE78370.1); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335) 0.0327620920913587 0.438065551610674 0.672387272850302 1 0.870936836917271 17.9797448988691 0.0327620920913587 0.0461658434408355
AT4G02220_at 6.64218469248507 7.01081362576435 7.29311076060455 7.20534107196562 5.10185383978022 5.0224005525254 4.69042581110169 4.2698056376757 4.76214286883111 3.67901277553567 3.26499523832707 3.70843789977791 3.40784676333446 3.10092799125058 3.58695205716064 3.67305236191112 4.13770843027960 4.09093877959513 3.67740402955526 0.252784970045015 0.250369147592975 0.250617538072344 0.250992172118386 0.248773028471972 0.255133225563668 0.250827767184978 0.242897724175473 0.249421251451438 0.263365995820765 0.249227165873171 0.243297291315258 0.242255628062443 0.245593589751206 0.246438006124567 0.242255628062443 0.251801377585586 0.244188138103154 0.250610945733395 4 4|0 +|/ 977859 978785 978366.7 976307 979163 + gene protein_coding_gene FALSE TRUE AT4G02220.1 zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein similar to programmed cell death 2 C-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G64830.1); similar to PREDICTED: similar to programmed cell death 2 isoform 1 isoform 2 [Canis familiaris] (GB:XP_854542.1); similar to Os03g0300200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049855.1); contains InterPro domain Programmed cell death protein 2, C-terminal; (InterPro:IPR007320); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893) 0.0421033316797311 0.438018046251244 0.672420361853406 1 0.870915513055605 9.73493066474378 0.0421033316797311 0.0989329408324336
AT1G03610_at 8.24395373132885 8.59085467454775 8.46323320004484 8.451217851883 8.87136737279961 8.46760106604229 8.95921946787798 8.84015078838314 8.18862043692151 7.99160432605767 8.12012158351286 8.07392978134751 8.50265053423669 8.33642967950729 7.81078913306768 8.4399946091769 8.23421314274873 7.97292728119419 8.3398662264664 0.167132865369373 0.15697035706224 0.163798679879414 0.154958206671576 0.156374356001769 0.175101063249577 0.154819871284320 0.168131948301364 0.172843506520388 0.162916478864312 0.156103188658558 0.155809588906088 0.158056277918247 0.170421020355986 0.164375837211926 0.153519743469923 0.181026359803940 0.164002664779431 0.162088402224339 1 1 + 901981 902598 902286.182 900886 903002 + gene protein_coding_gene FALSE TRUE AT1G03610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G03420.1); similar to Os10g0494000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064942.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46235.1); contains InterPro domain Protein of unknown function DUF789; (InterPro:IPR008507) -0.041085743945771 -0.43738022006938 0.672864701131276 1 0.870629423601228 16.7908225847372 -0.041085743945771 0.0944201873046417
AT2G46170_at 9.24214651936784 9.42393081610964 9.33940796022075 9.14903588813439 9.22013327272336 8.79979202162813 9.56467593200383 9.64505057964014 8.71342810978862 8.18925989621457 8.53592457027566 8.94341854169942 8.70736935679973 9.06449726273653 8.76924940976028 8.32776182936019 8.4121946712715 8.68773584726923 7.87790279192496 0.156841971118392 0.151753366354817 0.158962025115412 0.160727664485712 0.152113015582343 0.159227898970412 0.154817064721293 0.151901840759518 0.155067745022974 0.158835611397096 0.157617564782300 0.154338501881122 0.156923394980114 0.158497424657235 0.161789389037198 0.152988748418452 0.186357137240144 0.156672269496783 0.165099985893975 2 2|0 +|/ 18973156 18973961 18973444.5 18972386 18974259 + gene protein_coding_gene FALSE TRUE AT2G46170.1 reticulon family protein (RTNLB5) similar to reticulon family protein (RTNLB6) [Arabidopsis thaliana] (TAIR:AT3G61560.1); similar to putative 24 kDa seed maturation protein-like protein [Solanum tuberosum] (GB:ABC01908.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0394816637000734 0.43657392979465 0.673426594406435 1 0.870268339934155 17.7686295581232 0.0394816637000734 0.0869475107893216
AT4G08330_at 5.55702889814222 5.54174160824527 5.61623030153174 5.63721427667989 6.35810740253765 6.18558216521144 5.43557483347136 5.72011774851771 6.09653498766987 5.27712068885524 5.39478787224245 4.88648855168698 6.01083921631756 5.73513240015795 4.83947432370942 5.77121743575124 5.89267878266465 5.4731489589829 6.079176409023 0.223794037797772 0.224380730026133 0.230389874593835 0.217640052011174 0.223504313456068 0.215152426780191 0.226291845357695 0.215927774061019 0.228089138438089 0.218010012373621 0.237288217674424 0.219772589522242 0.214220734560106 0.219309309978341 0.229163455640167 0.222946332616735 0.226435631953608 0.224177616313845 0.219901546843865 4 4 - 5255410 5256495 5255748.273 5255117 5256701 - gene protein_coding_gene FALSE TRUE AT4G08330.1 similar to protein-methionine-S-oxide reductase [Arabidopsis thaliana] (TAIR:AT2G17705.1); similar to hypothetical protein MtrDRAFT_AC152348g2v1 [Medicago truncatula] (GB:ABE86174.1); similar to Os01g0833400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044712.1); similar to Os05g0466700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055787.1) 0.0342640059512427 0.436311363560526 0.673609620161108 1 0.870150891040968 11.4154904732281 0.0342640059512427 0.0577607775234579
AT3G14205_at 8.02041760855078 7.91425752098727 8.42675164579333 8.1369585867118 8.37774364273322 8.03893700067928 8.231227574553 7.95420300670344 8.8286838080499 8.40143096903153 8.42853971219765 8.2185757136972 8.21928334777635 8.41680898473868 7.82766416451286 8.4436168306005 8.34769662779673 8.27842468936682 8.47629487323128 0.132420258531773 0.122666417650142 0.135196219786991 0.123490925758543 0.123449390689653 0.131327135634732 0.126009725886732 0.128655153453128 0.127155488286901 0.131907808937752 0.125600053460142 0.129425598033127 0.129533392239389 0.128626849095872 0.126727484208941 0.124820094028229 0.127763204861368 0.125677405676863 0.124312615042539 3 3|0 -|/ 4716062 4716915 4716533.7 4715714 4720958 - gene protein_coding_gene FALSE TRUE AT3G14205.1 phosphoinositide phosphatase family protein similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G20840.1); similar to ATSAC1 (SUPPRESSOR OF ACTIN 1), phosphoinositide 5-phosphatase [Arabidopsis thaliana] (TAIR:AT1G22620.1); similar to phosphoinositide phosphatase family protein [Arabidopsis thaliana] (TAIR:AT3G43220.1); similar to Os03g0182400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049173.1); similar to Putative phosphoinositide phosphatase [Oryza sativa] (GB:AAK92639.1); similar to SacIy domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94324.1); contains InterPro domain Synaptojanin, N-terminal; (InterPro:IPR002013) -0.0405778333271378 -0.43583183807666 0.673943939844878 1 0.869936567551018 16.5582518111424 -0.0405778333271378 0.0926743729678989
AT4G16444_at 6.49164199725823 6.6639047867019 6.73195143589262 6.73055005593775 6.83564642611567 6.29523713223697 6.58568679762957 6.51438490720182 6.2576438072657 6.12383645525021 6.30190966750435 5.64826802394252 5.86045365182121 5.90005982007982 6.25841199161444 5.93761564599509 5.93649975708525 6.07672908420701 6.09240262060522 0.186514773258940 0.186523790250595 0.188217307698259 0.179777066170275 0.181464264754061 0.193641679281483 0.180988451620842 0.190253343943016 0.184579071592982 0.186297609201211 0.186655173798454 0.182268871822792 0.180466401582609 0.184258027308504 0.18461453016551 0.185561797721353 0.18094182215083 0.186476466587632 0.181032043594715 4 4|0 -|/ 9274816 9275990 9275457.714 9274467 9276349 - gene protein_coding_gene FALSE TRUE AT4G16444.1 similar to Os06g0198700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057061.1); contains domain NITRATE, FROMATE, IRON DEHYDROGENASE (PTHR11615); contains domain gb def: Hypothetical protein (PTHR11615:SF3) -0.0417629327056497 -0.434484238073807 0.674883880363322 1 0.86933546154989 12.6801026505326 -0.0417629327056497 0.0989295554465882
AT2G38460_at 6.60292155775884 6.40533077648962 6.72349986226192 6.24492562036957 7.11807083360492 6.9988865953909 7.82647148226527 7.44436318967317 6.6661468468984 7.1491554070268 7.34793669978852 6.94599047391734 7.10724638439118 7.25357115219584 6.99904283650505 7.15352968451612 7.30715461740064 7.14922963706897 7.03257653100494 0.198507300857277 0.204423318903423 0.203636876914521 0.197705727571569 0.190464662594148 0.199818803686197 0.203171783061850 0.193940140251172 0.204086254827868 0.196609243662280 0.194351767718822 0.192839122267214 0.191319541901097 0.201021068511989 0.193737473621303 0.191476231192701 0.1970076478705 0.202165973125990 0.196522972915100 2 2 + 16112103 16112984 16112546.909 16110681 16113255 + gene protein_coding_gene FALSE TRUE AT2G38460.1 iron transporter-related similar to iron-responsive transporter-related [Arabidopsis thaliana] (TAIR:AT5G03570.1); similar to solute carrier family 40 (iron-regulated transporter), member 1 [Mus musculus] (GB:NP_058613.1); similar to Os06g0560000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057867.1); similar to Solute carrier family 40 member 1 (Ferroportin-1) (Iron-regulated transporter 1) (Metal transporter protein 1) (MTP1) (GB:Q9JHI9); contains InterPro domain Ferroportin1; (InterPro:IPR009716) -0.0448781331134955 -0.434125609183061 0.675134122791487 1 0.869175791675358 13.9741865467433 -0.0448781331134955 0.113253277812490
AT3G49060_at 6.58209594805921 6.90884546825493 6.5970114939725 6.50414962164312 7.330390578474 5.91330185751252 6.32338130679792 6.45215790905287 6.87666265340473 5.92320793125443 6.60133059451064 6.70956820953267 6.32041175443234 6.71237708118108 5.46917327109418 6.72681224397295 6.06630286981796 6.60753974944933 5.9760398392422 0.260702135425406 0.243762651547828 0.249961977848976 0.259049730588092 0.251196039270586 0.269652751565314 0.258532735271679 0.2451663896628 0.261772665142103 0.246634172074232 0.243762651547828 0.256469355737285 0.246493156055290 0.248701119754281 0.248345591662906 0.247676005065031 0.256805694610215 0.259197049150744 0.253739131750579 3 3 - 18198395 18198993 18198696.545 18198199 18202920 - gene protein_coding_gene FALSE TRUE AT3G49060.1 protein kinase family protein / U-box domain-containing protein similar to protein kinase family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45910.1); similar to Protein kinase; U box [Medicago truncatula] (GB:ABD32822.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain U box; (InterPro:IPR003613) 0.0813229468205402 0.434063935183792 0.675177161691054 1 0.869148345651251 12.9065799128289 0.0813229468205402 0.253163798340435
AT3G13550_at 6.84314135235534 6.42230737032043 6.38879334322301 6.77920656814457 7.31548534456082 6.81184682719393 6.15398676683602 6.12746327407808 5.80061922164016 5.78419317133671 5.56049456421097 5.52129968766802 5.154324204785 5.09553362857772 5.24961175787265 5.67724837278512 4.99305092519353 5.1948593916179 5.34815326592298 0.258984097432903 0.258040203932224 0.270832121181244 0.269320773454824 0.259084696675695 0.288185250561775 0.261200753355828 0.257228633541953 0.273995954045288 0.258917793416756 0.265490876720585 0.257228633541953 0.259786250816042 0.274650068935391 0.257228633541953 0.261940146280595 0.269651964057108 0.267928248534821 0.262915829341956 3 3|0 -|/ 4423629 4424749 4424424.571 4423356 4424890 - gene protein_coding_gene FALSE TRUE AT3G13550.1|AT3G13550.2 FUS9 (FUSCA 9); ubiquitin-protein ligase Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark. Identical to Constitutive photomorphogenesis protein 10 (COP10) [Arabidopsis Thaliana] (GB:Q9LJD7); similar to UBC29 (ubiquitin-conjugating enzyme 27), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G16740.1); similar to Ubiquitin-conjugating enzyme, E2 [Medicago truncatula] (GB:ABE78691.1); contains InterPro domain Ubiquitin-conjugating enzyme, E2; (InterPro:IPR000608) 0.0492946300860138 0.433919823977255 0.675277733909469 1 0.869084228099014 12.0803412072834 0.0492946300860138 0.132234484877115
AT1G66340_at 7.05794998638802 6.83835369246104 6.79992075927242 6.83935236935252 6.77596168888821 6.95942770013512 6.40819896420087 6.72168634881127 5.68169452080716 5.51516832657636 5.23290143658656 5.36811192957321 5.70460723794462 5.42791797254553 5.62805583893093 5.72222245543065 5.60013807137566 5.56171809406133 5.87625630244344 0.209899588983352 0.204442846157979 0.202099541896535 0.199380860450057 0.204029692557214 0.213251808400939 0.198153609964603 0.203500677630197 0.200016270349617 0.202948521069271 0.200083420863784 0.199472388937606 0.198504577705453 0.208286321886632 0.203358142566913 0.199618358629659 0.205724149000783 0.19843691358191 0.19837250085252 1 0|1 /|+ 24740398 24741000 24740765.9 24737825 24741419 + gene protein_coding_gene FALSE TRUE AT1G66340.1 ETR1 (ETHYLENE RESPONSE 1); two-component response regulator Similar to prokaryote sensory transduction proteins. Contains a histidine kinase and a response regulator domain. Homodimer. Membrane component. Binds ethylene. Mutations affect ethylene binding and metabolism of other plant hormones such as auxin, cytokinins, ABA and gibberellic acid. Ethylene receptor. Has histidine kinase activity. Identical to Ethylene receptor (EC 2.7.13.3) (ETR1) [Arabidopsis Thaliana] (GB:P49333); similar to ERS1 (ETHYLENE RESPONSE SENSOR 1), receptor [Arabidopsis thaliana] (TAIR:AT2G40940.1); similar to Ethylene receptor (GB:O49230); similar to ethylene receptor [Fragaria x ananassa] (GB:CAC48384.1); similar to Ethylene receptor (GB:Q9M7M1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Histidine kinase related protein, C-terminal; (InterPro:IPR004358); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.0366061028030777 -0.432312410348584 0.676399980705774 1 0.868370438241442 12.4109808617712 -0.0366061028030777 0.0737691054064193
AT4G11840_at 6.49500905297121 6.64380132607863 6.48360715992017 5.83572914254561 4.85110157950647 5.40765961015289 3.35662373781431 4.1173028978349 5.86235885236846 4.58667316451842 4.52000910945219 4.96283391861946 4.84406840778735 5.00426860566061 4.13947165750345 4.79318606160791 4.37602916799 5.00243843104110 4.74349468705222 0.292455634994113 0.296381545956119 0.290035285904594 0.298059756349402 0.285514532225744 0.288166507313127 0.290532715058786 0.28457069070274 0.301233823446233 0.294422367739628 0.283222259438083 0.283007282637831 0.293412814505433 0.284568982222712 0.294018846453272 0.284599718903673 0.308965786593656 0.286269224742447 0.283007282637831 4 4 - 7122159 7122892 7122366 7121959 7125876 - gene protein_coding_gene FALSE TRUE AT4G11840.1 PLDGAMMA3 (phospholipase D gamma 3); phospholipase D member of C2-PLD subfamily Identical to Phospholipase D gamma 3 (EC 3.1.4.4) (AtPLDgamma3) (PLD gamma 3) (PLDGAMMA3) [Arabidopsis Thaliana] (GB:Q9T052;GB:Q9XH77); similar to phospholipase D gamma 2 / PLD gamma 2 (PLDGAMMA2) [Arabidopsis thaliana] (TAIR:AT4G11830.2); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to PLDBETA1 (PHOSPHOLIPASE D BETA 1), phospholipase D [Arabidopsis thaliana] (TAIR:AT2G42010.1); similar to phospholipase D [Gossypium hirsutum] (GB:AAD43343.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); similar to phospholipase PLDb1 [Lycopersicon esculentum] (GB:AAG45487.1); contains InterPro domain Phospholipase D, plant; (InterPro:IPR011402); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0662263606672905 0.431546114054382 0.676935285991652 1 0.8680310451646 10.2835861823217 0.0662263606672905 0.199596982985231
AT1G74850_at 6.76949924919306 6.77673608089916 6.29632650988113 6.31060761378137 7.1098272502914 6.46660827790437 7.26943347333661 6.54010425574069 5.17759448807513 5.35288645143309 5.01385930858876 6.01390872294412 5.52666476119484 5.72003118339087 5.96169181204268 5.64548821250806 5.55276148878391 4.77384398945019 4.82041270713752 0.203664482312293 0.206141986044962 0.206233084225978 0.204785942624132 0.203310607574562 0.205800184181867 0.207537372441783 0.201766684946072 0.206522734806917 0.207126097930317 0.198932458479976 0.204252138479102 0.204138143105524 0.200370975349026 0.207156891653843 0.199940666482434 0.219610588016726 0.211730641986823 0.215573129588841 1 1 - 28122950 28123632 28123267.909 28122510 28125975 - gene protein_coding_gene FALSE TRUE AT1G74850.1 PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2); binding Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to Os03g0824100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051748.1); similar to putative chloroplast RNA processing protein [Oryza sativa (japonica cultivar-group)] (GB:AAO18446.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Smr protein/MutS2 C-terminal; (InterPro:IPR002625); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0579828920766009 0.431353165925734 0.677070102733381 1 0.867945678839011 12.0138907057509 0.0579828920766009 0.16830916857549
AT4G30440_at 9.72428864066916 10.1005284492448 9.7054054898198 9.90923114862403 10.3947301107497 10.0082264595398 11.0052950488104 10.9258282315951 10.3273408412151 10.4037045051098 11.2867438231393 10.7568389792130 11.0490095411762 10.9390116012147 10.5477519376671 10.6988713170125 10.4556373482395 10.6602446669295 10.6137354103934 0.127542161103489 0.122287340156358 0.122056450239648 0.124540059106401 0.117861361991114 0.125181610569123 0.121517238057302 0.120828054813207 0.143763825776652 0.121439086279868 0.122907480395931 0.116953568432614 0.116711849108916 0.116711849108916 0.117009350685154 0.116711849108916 0.136660368022344 0.127730814271627 0.117263877743992 4 4 - 14882093 14882551 14882340.364 14881861 14883486 - gene protein_coding_gene FALSE TRUE AT4G30440.1 GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic UDP-D-glucuronate 4-epimerase similar to GAE2 (UDP-D-GLUCURONATE 4-EPIMERASE 2), catalytic [Arabidopsis thaliana] (TAIR:AT1G02000.1); similar to UDP-glucuronic acid 4-epimerase [Zea mays] (GB:ABB51650.1); similar to putative uridine diphosphate galacturonate 4-epimerase [Oryza sativa (japonica cultivar-group)] (GB:BAD36515.1); similar to Os02g0791500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048359.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509); contains InterPro domain Nucleotide sugar epimerase; (InterPro:IPR008089) -0.0417916954059963 -0.430812029217849 0.677448271373006 1 0.867706457223489 20.8454536494133 -0.0417916954059963 0.100729312031273
AT4G29510_at 6.92718240597196 7.4115699846407 6.56356228411753 6.86624613806235 6.99368374531545 7.53350857987442 6.42526414423938 7.12639691183287 5.79572207689203 6.26972935004841 6.03511224135343 6.30707589166953 6.27712790904526 5.79899742528186 5.88134105309546 6.07463172839029 6.233267505066 6.32089825212263 5.96456146128872 0.240345394766348 0.227883649936773 0.235397637610838 0.23858733835272 0.224481509039145 0.227046430974046 0.227787783597107 0.243004757275217 0.236332133797915 0.22929312296104 0.224151956999775 0.228867180399536 0.226165435933966 0.23498494711786 0.226829359855036 0.224151956999775 0.237934748445389 0.23897002790603 0.229338664334606 4 4 + 14492716 14493724 14493228.818 14491631 14494007 + gene protein_coding_gene FALSE TRUE AT4G29510.1 protein arginine N-methyltransferase, putative similar to protein arginine N-methyltransferase, putative [Arabidopsis thaliana] (TAIR:AT2G19670.1); similar to Os09g0359800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062975.1); similar to SAM (and some other nucleotide) binding motif [Medicago truncatula] (GB:ABE80540.1); contains InterPro domain Methyltransferase type 12; (InterPro:IPR013217); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051) 0.0613495149239403 0.42954775722319 0.678332172846184 1 0.867148674108527 13.0439571726716 0.0613495149239403 0.182262536673614
AT4G33410_at 5.38356289029864 5.91345415046475 5.45020949153847 5.43196891640356 6.1252922901341 5.59430141671335 6.02707477251779 5.82413086187657 5.30495407269992 5.84534477258337 5.79897560453183 5.91850564328903 6.15854840283026 6.63999610193672 5.88728341181884 5.96507448948081 5.54945529060712 5.54661093978976 5.94297469775672 0.220759338610994 0.220505681266983 0.222970849922451 0.231507443413081 0.221147700632065 0.233861690842527 0.219524795016024 0.233759809522449 0.239695891491696 0.244613258877181 0.228861694620194 0.221732618952334 0.226148921525789 0.227283492653937 0.230670910919542 0.222163736756645 0.248721332798414 0.232496735909122 0.229104577250867 4 4|0 +|/ 16082175 16083071 16082547 16080879 16083240 + gene protein_coding_gene FALSE TRUE AT4G33410.1 signal peptide peptidase family protein similar to protease-associated (PA) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G43070.1); similar to Os10g0393100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064518.1); similar to GA14486-PA [Drosophila pseudoobscura] (GB:EAL28339.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22B, minor histocompatibility antigen H13; (InterPro:IPR007369) 0.0493428738817383 0.429535328888441 0.678340864587546 1 0.867143198625992 11.5341563903512 0.0493428738817383 0.134522037325847
AT3G59360_at 5.91677652864168 6.24478261488158 6.20972223129987 6.4468449481059 6.84872695609391 6.31277170467729 6.84337047906041 6.72950504954515 5.76879072149883 5.32930683718234 5.67983314818748 5.55230346001289 5.39715213038522 5.70947852341164 5.45667166909501 5.54630395478931 5.33501567850824 5.53971091604434 5.2734274309883 0.2186926488388 0.209731032661219 0.216895494512042 0.210564591059971 0.218741186788767 0.231329836438522 0.216673679030321 0.2182866755067 0.222190232626449 0.213168450997315 0.212527841884509 0.220202674657251 0.21946300769339 0.216979081380050 0.219457806850923 0.210671787371598 0.229082570803129 0.217705918253323 0.212550002607659 3 0|3 /|- 21946814 21948245 21947409.625 21946256 21951227 - gene protein_coding_gene FALSE TRUE AT3G59360.1|AT3G59360.2 ATUTR6/UTR6 (UDP-GALACTOSE TRANSPORTER 6); nucleotide-sugar transporter similar to nucleotide-sugar transporter [Arabidopsis thaliana] (TAIR:AT2G43240.1); similar to OSIGBa0130B08.1 [Oryza sativa (indica cultivar-group)] (GB:CAH67341.1); similar to PREDICTED: similar to putative nucleotide sugar transporter [Gallus gallus] (GB:XP_414469.2); similar to Os02g0604300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047368.1); contains InterPro domain Nucleotide-sugar transporter; (InterPro:IPR007271) 0.0453957402549078 0.429019684940389 0.678701524350042 1 0.866916157497285 11.9361794048436 0.0453957402549078 0.117884214959375
AT3G55740_at 6.04170253620476 6.4612068740152 6.10124917710682 6.32408301705253 7.06641910478233 6.62168071139853 6.36996719527722 6.65290618519878 6.60263664399759 5.59745323410695 6.41659877995522 5.98457315540977 6.37136176939651 6.02332471522891 5.83614241506128 6.40348470237761 5.84911150887851 5.95315654391752 6.8331490782605 0.219622335604217 0.209115510098376 0.211962679707131 0.215252459017903 0.209737675966011 0.209115510098376 0.217748371651670 0.213085208807814 0.222272558244872 0.229175526688659 0.212657620426926 0.212609422704448 0.219556785422953 0.219602590431839 0.214853065752664 0.216016871090400 0.221477286166703 0.219774531651084 0.227543602218846 3 0|3 /|+ 20708494 20709089 20708792.9 20706478 20709250 + gene protein_coding_gene FALSE TRUE AT3G55740.1|AT3G55740.2 ProT2 (PROLINE TRANSPORTER 2); amino acid permease|ProT2 (PROLINE TRANSPORTER 2) Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed most highly in the roots. similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G39890.2); similar to ProT3 (PROLINE TRANSPORTER 3), amino acid permease [Arabidopsis thaliana] (TAIR:AT2G36590.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93109.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93110.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057)|similar to ProT1 (PROLINE TRANSPORTER 1) [Arabidopsis thaliana] (TAIR:AT2G39890.2); similar to ProT3 (PROLINE TRANSPORTER 3), amino acid permease [Arabidopsis thaliana] (TAIR:AT2G36590.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93110.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.0463907408828912 -0.427803897804598 0.679552234977938 1 0.866381869556748 12.6794679422461 -0.0463907408828912 0.122793902140318
AT2G43560_at 10.6933449953411 10.5370862368416 10.4973028738000 10.2310509344090 10.8325855659555 10.4055296877533 11.3347917738793 11.0090577134774 11.0147003051463 11.2613282798139 11.5237759287952 11.7184115403927 11.2430284318011 11.2768039953274 11.8235952736426 11.5142745894964 11.1099089967268 11.3960436055626 11.1266971857680 0.0592515952313984 0.0582912251007325 0.0588009060897562 0.0584396824651856 0.0592242224117936 0.0571697754840362 0.0598384321146357 0.0583107752862385 0.0608889767935054 0.0585445642191718 0.060848860186139 0.0571697754840362 0.0580259417524381 0.0610085618105302 0.0621441795124009 0.0574254918094452 0.0638363991496567 0.0591022895671962 0.0584754675592156 2 2|0 -|/ 18081083 18082035 18081602.9 18080936 18082575 - gene protein_coding_gene FALSE TRUE AT2G43560.1 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein Identical to Probable FKBP-type peptidyl-prolyl cis-trans isomerase 2, chloroplast precursor (EC 5.2.1.8) (PPIase) (Rotamase) [Arabidopsis Thaliana] (GB:O22870;GB:Q940C0); similar to FK506-binding protein 1 (FKBP13) [Arabidopsis thaliana] (TAIR:AT5G45680.1); similar to Os08g0541400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062387.1); similar to putative FKBP type peptidyl-prolyl cis-trans isomerase [Pyrus communis] (GB:AAL66192.1); contains InterPro domain Peptidylprolyl isomerase, FKBP-type; (InterPro:IPR001179) -0.0427322713816813 -0.426218057608745 0.680662607480215 1 0.86568713430161 21.9850798320792 -0.0427322713816813 0.107208208696541
AT1G64850_at 10.6398867446467 10.7111920082741 10.9926306819939 11.0108794315586 10.9932670507220 10.8024328783888 11.0966543498633 11.0770542011725 10.5697539113708 10.8040185029994 10.7657998619583 10.3814397625687 10.7158459434724 10.7360948691011 10.4425613394136 10.7870657503704 10.8448606900436 10.7088055738670 10.6664550339424 0.0798108382960874 0.0784290141009642 0.0780182482853286 0.0797302998306691 0.0820249405227906 0.0799449713049575 0.0810070524971285 0.0786872229649818 0.0872442641770088 0.0810336225961917 0.0808262239519032 0.0832886547744754 0.0803706322249805 0.0858972239959127 0.0806559125474179 0.082557648982836 0.091081840234721 0.0836373265374148 0.0811827629273733 1 1|0 -|/ 24100228 24101209 24100480.7 24100098 24101313 - gene protein_coding_gene FALSE TRUE AT1G64850.1 calcium-binding EF hand family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G37445.1); similar to B0403H10-OSIGBa0105A11.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67859.1); similar to Os04g0601400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053764.1); similar to Os04g0601500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053765.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0306695462109197 0.426113410587237 0.680735908110283 1 0.865641376503712 21.5919421883043 0.0306695462109197 0.0355581244879106
AT1G02680_at 5.03092348864987 5.67647228345779 4.94347211253267 5.35692900201506 5.82826350500136 4.83038554983325 4.77621197978554 5.18381505101901 4.9379745099255 4.65610791406406 4.63502631437039 4.95306895106105 4.4022739239945 5.13705914920781 4.25946120182338 5.08901839780323 4.44752576380014 4.25630438727889 5.00634442221581 0.249988059811739 0.243115405233685 0.248295536834941 0.245822546066977 0.239690627533949 0.270691754933169 0.243567875679203 0.240908241271471 0.255572232899704 0.243132069096207 0.241970319040009 0.242061208502529 0.252494463635937 0.252914586269148 0.242019206024346 0.239690627533949 0.250908007991911 0.246921705450911 0.243637526351400 1 1|0 +|/ 581106 581872 581506.3 580625 582310 + gene protein_coding_gene FALSE TRUE AT1G02680.1 transcription initiation factor IID (TFIID) 18 kDa subunit (TAFII-18) family protein similar to putative TAF13 [Oryza sativa (japonica cultivar-group)] (GB:BAD53935.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription initiation factor IID, 18 kDa subunit; (InterPro:IPR003195) -0.0732174229750826 -0.426063733814449 0.68077070575522 1 0.865619658669339 9.9604472264881 -0.0732174229750826 0.228902362821492
AT1G58230_at 6.94485763833975 6.92965272708561 6.78849686848622 6.97995792348909 7.11009010213765 6.88370328579471 6.77523893708475 6.65801411013529 7.01326599492233 6.88086734866326 6.88863102817909 6.99479147727309 6.51752492972823 6.70300834572245 6.64508033268808 7.01709034290392 7.01769406422387 6.85474910445134 7.13430611324312 0.129030128560875 0.126924845163819 0.126392345719294 0.127886130470842 0.131063766452154 0.129142027382288 0.131849670449432 0.126930022088372 0.136346208296884 0.128953946972129 0.124228851972124 0.128072017961369 0.124228851972124 0.135424669448871 0.132593888019707 0.126235292896773 0.135838841971051 0.128374407030302 0.129468775932882 1 1 + 21581990 21582451 21582237.182 21577371 21582530 + gene protein_coding_gene FALSE TRUE AT1G58230.1 WD-40 repeat family protein / beige-related similar to WD-40 repeat family protein / beige-related [Arabidopsis thaliana] (TAIR:AT2G45540.1); similar to LvsC-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45539.1); similar to putative LvsC [Oryza sativa (japonica cultivar-group)] (GB:BAD25221.1); similar to BEACH domain-containing protein [Dictyostelium discoideum AX4] (GB:XP_640913.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Beige/BEACH; (InterPro:IPR000409); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0330187119905394 -0.425161498227917 0.681402845129592 1 0.865225637544027 13.8034019601137 -0.0330187119905394 0.0552370252281965
ATCG00630_at 11.9198212228843 13.1005917467195 11.9519985588312 12.6405071595659 11.9637672655411 11.9904532125615 12.2162105357483 13.3153552375662 13.8625525819695 13.8348116268096 14.5041412067029 14.4600751208384 14.3182695463767 14.3871428234147 14.2127027344053 14.3254202735831 13.5040920920682 13.8364093425588 13.9407760512577 0.148021747542466 0.138156506525468 0.163065735054752 0.138156506525468 0.139156594703540 0.157107206770082 0.140061774475026 0.141509176630226 0.142877557131939 0.138156506525468 0.141830886963730 0.142926921656367 0.139114625248844 0.142132068191382 0.138867260837668 0.143330992949730 0.141628456540164 0.142687619193153 0.138160967098614 C C + 66935 67034 66983.273 66929 67063 + gene protein_coding_gene FALSE TRUE ATCG00630.1 Encodes subunit J of photosystem I. Identical to Photosystem I reaction center subunit IX (PSI-J) (psaJ) [Arabidopsis Thaliana] (GB:P56769); similar to photosystem I subunit IX [Eucalyptus globulus subsp. globulus] (GB:YP_636318.1); similar to photosystem I reaction center subunit IX [Lactuca sativa] (GB:YP_398349.1); contains InterPro domain Photosystem I reaction centre, subunit IX / PsaJ; (InterPro:IPR002615) -0.0935807903950305 -0.425084733246411 0.681456641764597 1 0.865192149841425 26.4237939820134 -0.0935807903950305 0.303566409252168
AT2G15580_at 9.9429385706379 10.0046069685726 10.2302193361126 10.2202636135935 10.5173790794698 10.2014618549647 10.2404116122518 10.2455310058157 10.5370999118973 10.2403260083618 10.4067245924925 10.1640968303451 10.4674226395479 10.2024391557889 10.0066060705975 10.3640587470100 9.82001481956402 10.0520808204357 10.5284403166847 0.0919877903508456 0.0938093989282336 0.0952784654438926 0.0971384867609151 0.093379503047759 0.104469967579700 0.0944361244770158 0.0915850202657046 0.0979075893785296 0.0953836931811588 0.0916755777031035 0.0930327847067323 0.0970438892247823 0.0988223431719517 0.0972723943191819 0.0944331179177477 0.096999376990475 0.099525970587228 0.0975452908737317 2 2|0 +|/ 6804776 6805833 6805229.1 6804720 6806021 + gene protein_coding_gene FALSE TRUE AT2G15580.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G49850.1); similar to Os06g0180800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056975.1); similar to RING-H2 zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAC22255.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0329496772297857 -0.42334717275405 0.682674832081178 1 0.864435707473826 20.5107111077376 -0.0329496772297857 0.0557365010611716
AT1G69390_at 9.4482823284155 9.4543088535647 9.22861880303735 9.1359087064585 9.35657966765316 9.14503959958437 9.31309450647746 9.31574753781629 9.10908502334222 9.28997883466385 9.31872728169856 9.4021218466160 9.12364410960248 9.29584500097598 9.33572958857015 9.4103398056171 9.142836601997 9.37189605714145 9.18727697161553 0.126507820936866 0.119295544829551 0.128087743504390 0.121056679246268 0.121910949602659 0.124782508892906 0.122195989708429 0.126321274602582 0.133776357494603 0.121844136491994 0.128747132153643 0.119641382709787 0.121531552372098 0.12972912703129 0.134144725292831 0.121212508218709 0.132883131531610 0.132459425225475 0.121928263517997 1 1 + 26089410 26089903 26089639 26088298 26090144 + gene protein_coding_gene FALSE TRUE AT1G69390.1 ATMINE1 (ARABIDOPSIS HOMOLOGUE OF BACTERIAL MINE 1); protein binding Encodes an Arabidopsis homologue of the bacterial MinE topological specificity factor ensuring correct division site placement. It is an essential integral component of the plastid division machinery. similar to plastid division regulator MinE [Brassica napus] (GB:AAZ23773.1) -0.0308130095324983 -0.421672981391784 0.683849523965462 1 0.863709653612496 18.5474922402432 -0.0308130095324983 0.0399856347853823
AT1G58440_at 6.31123594703676 6.8529077668002 6.42053059030258 6.28128602161282 7.51947833645039 7.3320904807007 7.69815533220785 7.8356822102616 8.73822358813674 7.96881236821155 8.82623025503934 8.35288035721251 8.3175796530141 8.84829136017654 8.54074965315568 7.9363535963672 7.24144095533185 8.65936077103258 7.70589445896679 0.192018653711635 0.176372358546826 0.201602527797060 0.190430282259853 0.180554460322970 0.181384304460130 0.175299463802614 0.171063998980758 0.178140449774096 0.176377976884553 0.179343455711983 0.175459090741913 0.172822513556565 0.177735935292697 0.175493062527731 0.174640751137169 0.199983594748542 0.171445900704271 0.179394344357446 1 1 - 21717800 21718478 21718112.273 21717507 21720955 - gene protein_coding_gene FALSE TRUE AT1G58440.1 XF1; oxidoreductase Encodes a putative protein that has been speculated, based on sequence similarities, to have squalene monooxygenase activity. similar to squalene monooxygenase, putative / squalene epoxidase, putative [Arabidopsis thaliana] (TAIR:AT2G22830.1); similar to squalene monooxygenase, putative / squalene epoxidase, putative [Arabidopsis thaliana] (TAIR:AT4G37760.1); similar to squalene epoxidase [Medicago sativa] (GB:ABC94943.1); similar to squalene monooxygenase [Datura innoxia] (GB:AAY22200.1); similar to squalene monooxygenase 2 [Medicago truncatula] (GB:CAD23248.1); contains InterPro domain Squalene epoxidase; (InterPro:IPR013698); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042) -0.0417158017077248 -0.421178377356694 0.684196735651255 1 0.863495682756141 15.2704229841406 -0.0417158017077248 0.104812462736139
AT3G57750_at 5.40758425358178 5.91545341807174 5.75798748301843 6.20102604999055 6.07301326501257 5.35758604363989 6.48374557491734 6.69836364872921 5.52027641113045 5.37938517643672 5.85793292761895 5.94530088191091 5.60516126531927 6.31772241864734 5.37785856239055 6.04967373961166 6.02267822690816 5.42833369330453 5.39271452868354 0.185356569661732 0.185530778020606 0.186986798448795 0.186323066800398 0.184859960602293 0.197626066004482 0.186755641722282 0.1836167020773 0.182959708441843 0.184722175105584 0.182794740822203 0.189170123780283 0.185563374386576 0.185374294887032 0.191096257389224 0.183817838262661 0.202470939363522 0.192651189940707 0.189715481023133 3 3 + 21405486 21405907 21405664.636 21404956 21406265 + gene protein_coding_gene FALSE TRUE AT3G57750.1|AT3G57750.2 protein kinase, putative|kinase similar to protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G57700.1); similar to OSJNba0093F12.22 [Oryza sativa (japonica cultivar-group)] (GB:CAE03948.3); similar to wall-associated kinase 1 [Triticum aestivum] (GB:AAY34780.1); similar to Os04g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053747.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) 0.057953581152012 0.42029363282218 0.684818023385392 1 0.863113531926656 11.6150323437273 0.057953581152012 0.174099467181974
AT4G13200_at 8.15182222888767 8.19990224103668 8.08446477430007 8.22002609431564 8.58813063688774 8.17619313438138 7.97186723180667 8.29073839665897 7.8869352345055 8.33553297519388 8.248006569357 8.14803188942676 7.97853937680055 8.22453746452368 7.97520198584019 8.2951802790495 8.05655354614249 8.29189406193511 8.33997314427602 0.176974647012077 0.176530850357304 0.180655454044455 0.172292539298167 0.178644121501023 0.177093764228760 0.189125521115718 0.179416263417334 0.182643477722748 0.171223854960359 0.172450627095608 0.17104002142054 0.184178308857451 0.172847955320876 0.19405372783688 0.166275529329965 0.186267421677281 0.178528003311594 0.172958921317517 4 4 - 7668293 7669138 7668745 7668143 7669208 - gene protein_coding_gene FALSE TRUE AT4G13200.1 similar to COG0840: Methyl-accepting chemotaxis protein [Nostoc punctiforme PCC 73102] (GB:ZP_00112432.1); similar to Os04g0513000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053301.1) 0.0391919153414924 0.419130503640282 0.685635184413488 1 0.862612306633702 16.3802548912641 0.0391919153414924 0.093523179434877
AT1G27760_at 8.32681840390502 8.09277937040802 8.4692328402361 8.3708874302996 7.95299500129605 7.66547995053501 9.02218690128127 8.3214433121399 6.86123194419875 6.91614332825786 6.5847758587354 6.77352027119026 7.39815466044027 7.25539639381367 6.83794287397691 7.62619528218865 7.69065122674683 6.71678180780547 6.86953298061021 0.18059171365982 0.184595795554317 0.18059171365982 0.184382600330419 0.18059171365982 0.190339684263104 0.184073436459033 0.189223830719152 0.196256727544745 0.187721751457183 0.185782645224299 0.182411537203172 0.184490804208333 0.186455508929034 0.188035205155345 0.18059171365982 0.181421533672639 0.197954769778626 0.188870507358673 1 1 + 9670344 9671271 9670636.727 9668571 9671603 + gene protein_coding_gene FALSE TRUE AT1G27760.1|AT1G27760.2|AT1G27760.3 interferon-related developmental regulator family protein / IFRD protein family similar to Os07g0588000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060139.1); similar to Os03g0448700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050472.1); similar to interferon-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17186.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Interferon-related protein conserved region; (InterPro:IPR006921); contains InterPro domain Interferon-related developmental regulator; (InterPro:IPR007701)|similar to Os07g0588000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060139.1); similar to Os03g0448700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050472.1); similar to interferon-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17186.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Interferon-related protein conserved region; (InterPro:IPR006921); contains InterPro domain Interferon-related developmental regulator; (InterPro:IPR007701)|similar to Os07g0588000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060139.1); similar to Os03g0448700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050472.1); similar to interferon-related protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD17186.1); contains InterPro domain Four-helical cytokine; (InterPro:IPR009079); contains InterPro domain Interferon-related protein conserved region; (InterPro:IPR006921); contains InterPro domain Interferon-related developmental regulator; (InterPro:IPR007701) -0.0490168227509786 -0.419089273722979 0.68566415867698 1 0.862594563874459 15.2740929252048 -0.0490168227509786 0.138243770263643
AT3G03950_at 8.25297399981074 8.54461480960967 8.33213292872809 8.55015667824043 8.54320567849653 8.40449253052418 8.07595497286147 7.7749254242196 7.01770349935568 6.92651310761851 6.27125535516227 6.73714937944933 6.80638916954713 6.67150540729203 6.30947797173507 7.02130455412374 7.21661991890082 6.86718233004525 6.9300224527963 0.204144721835858 0.199197187797313 0.210394880458455 0.20432662746811 0.207066563377131 0.202854966931911 0.202405028141283 0.201332060539893 0.21666287118832 0.205880711603736 0.20499689657005 0.206854278668669 0.204278059330408 0.20814538265912 0.214599499921590 0.201117116974235 0.205998009790435 0.206382018109827 0.199197187797313 3 3|0 +|/ 1022889 1023337 1023151.333 1021267 1024016 + gene protein_coding_gene FALSE TRUE AT3G03950.1|AT3G03950.2|AT3G03950.3 ECT1; protein binding|ECT1 Physically interacts with CIPK1. Located in the nucleus. similar to ECT3 (evolutionary conserved C-terminal 3) [Arabidopsis thaliana] (TAIR:AT5G61020.2); similar to YT521-B-like protein [Medicago truncatula] (GB:ABE87461.1); contains InterPro domain YT521-B-like protein; (InterPro:IPR007275) 0.0374552382818623 0.417820075689127 0.686556353984832 1 0.862049197779073 15.1576522264974 0.0374552382818623 0.0852105496524598
AT2G32710_at 6.73161076339835 6.79684459092366 6.6672718655581 6.39936558761626 7.64442334872398 7.59000971547748 6.80263577760965 6.65629617689349 6.21532563817998 5.90743999188085 5.13311017413575 5.22803857629343 5.79624129918186 5.87980201837584 5.39044018216332 6.07492957050204 6.50294313234373 5.69090279401007 6.1927414123708 0.197442981377917 0.200848943680624 0.197442981377917 0.208570289481270 0.2056841190557 0.210281121453812 0.199186545881319 0.199081237496236 0.208028521584361 0.20760103172068 0.210429311811975 0.206098317197639 0.198887464953087 0.21307958773089 0.215985944416422 0.199975790554170 0.221359431075941 0.2097389306349 0.200970281494709 2 2 + 13880864 13882375 13881610.273 13880513 13882908 + gene protein_coding_gene FALSE TRUE AT2G32710.1|AT2G32710.2 KRP4 (KIP-RELATED PROTEIN 4) Kip-related protein (KRP) gene, encodes CDK (cyclin-dependent kinase) inhibitor (CKI). A member of seven KRP genes found in Arabidopsis thaliana. Negative regulator of cell division. Expressed in actively dividing cells. similar to ICK6 (KIP-RELATED PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT5G48820.1); similar to cyclin dependent kinase inhibitor [Euphorbia esula] (GB:AAV76001.1); contains InterPro domain Cyclin-dependent kinase inhibitor; (InterPro:IPR003175) -0.0323486218152267 -0.417261893192782 0.686948898224609 1 0.861809851434 12.8196672195349 -0.0323486218152267 0.0548354903491567
AT1G64720_at 12.7232372837600 12.8477510320269 12.8779543130355 12.8970386154878 13.1595119279523 13.1421791308152 12.8919272017240 12.9315671515997 13.9263498324453 13.7167045257642 13.8093881469769 13.5261483429415 13.6873050736968 13.6651742834902 13.2903983953177 13.8096614362233 13.3059911262622 13.7329463410298 13.8527067394189 0.0631220821891689 0.0627715705219433 0.0731464791203498 0.0662653019652537 0.063311985059704 0.0730459476830188 0.063586523839807 0.0657677927699242 0.065941141294581 0.0673819013976997 0.0622849685771593 0.0622849685771593 0.0659293112719086 0.068485515412642 0.0652747626826379 0.0622849685771593 0.0737563067807885 0.0660172351835895 0.0660778245080188 1 1|0 -|/ 24050632 24051343 24050977 24050216 24052285 - gene protein_coding_gene FALSE TRUE AT1G64720.1 CP5 membrane related protein CP5 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G54170.1); similar to putative nodule membrane protein [Medicago sativa] (GB:AAL57201.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.0289966965443926 -0.417174245670494 0.68701054583042 1 0.861772296348897 26.6515443366094 -0.0289966965443926 0.0230491893210101
AT2G05380_at 11.6406784300240 11.9093300581447 11.1185923875845 11.1244829666724 11.8605436157411 11.8186913605415 9.4210539403315 9.47976967229833 9.78554345820406 9.84890337666615 9.16377171338748 9.30399534124043 9.78172646064641 9.45387932684394 7.80128886368416 7.44982332174763 9.38467350879488 9.4479958780665 9.70095398420534 0.187901645903905 0.18532506745636 0.180339438725416 0.181645039000665 0.181305347272427 0.188970176786625 0.174846456613694 0.176016314657466 0.172579338800278 0.172579338800278 0.189116983055785 0.173423173489586 0.175342334063582 0.176494897053531 0.211915731034864 0.226289452078202 0.173045200059304 0.175649676082327 0.177600454916445 2 2|0 +|/ 1966848 1967786 1967431.111 1966813 1968034 + gene protein_coding_gene FALSE TRUE AT2G05380.1 GRP3S (GLYCINE-RICH PROTEIN 3 SHORT ISOFORM) glycine-rich protein 3 short isoform (GRP3S) mRNA, complete similar to GRP-3 (GLYCINE-RICH PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT2G05520.3); similar to glycine-rich protein [Brassica oleracea] (GB:AAL67434.1); contains InterPro domain Glycine rich; (InterPro:IPR010800) 0.0313984597724317 0.41653096898474 0.687463075382377 1 0.861496897104428 20.4225734246639 0.0313984597724317 0.0481476343846367
AT2G02470_at 5.7318648062402 5.72108145494234 5.53367663844385 5.33631999635796 6.1455604486108 5.91715415970795 5.71661336212665 5.98483092916527 6.08572372457593 6.16906319539525 6.04549736973705 6.53028319478276 6.41933193141094 6.14544708731363 5.75654429309582 6.35350454540377 6.04963110517812 5.47349583611552 6.07638404950688 0.191661647571454 0.185151180448920 0.190220759633636 0.190264209034161 0.192566010673771 0.198549093467332 0.196269294312003 0.193649851184860 0.188802507856236 0.195948532131229 0.185151180448920 0.188260059500409 0.185151180448920 0.192697108791618 0.191137493621734 0.185173799227027 0.186539221223618 0.192115896988874 0.194382504162296 2 2|0 +|/ 653370 654493 654034.778 652579 654914 + gene protein_coding_gene FALSE TRUE AT2G02470.1 PHD finger family protein similar to PHD finger family protein [Arabidopsis thaliana] (TAIR:AT1G14510.1); similar to PHD5 [Glycine max] (GB:ABI97244.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) -0.0345466150590623 -0.41572615736684 0.68802942806141 1 0.861152914359398 11.8644413462189 -0.0345466150590623 0.0699055210729748
AT3G14930_at 9.45733583638932 9.39971539165716 8.8752152077625 8.65149951172926 9.46358101919595 9.22035437921077 9.73105776855564 9.45493978116804 9.6226448075817 9.45809840944378 10.0783791370484 10.2237805496368 9.51917714012268 9.80205309774124 10.4659375106138 9.69006940394025 9.32428350455446 9.69262998302526 9.30616961772214 0.091979819979369 0.0897233222728634 0.0946155076295694 0.0952184812292075 0.0878142240051095 0.0955580242370812 0.0930641203648049 0.0875394218732126 0.0898916147103587 0.0867567144405502 0.0926880424101548 0.0883876817409513 0.0860293585083974 0.0941063941246654 0.0884946794916714 0.0878461489521717 0.0921730824574587 0.0955060974801504 0.086814117565625 3 3 + 5021810 5022486 5022117.273 5020577 5022966 + gene protein_coding_gene FALSE TRUE AT3G14930.1|AT3G14930.2|AT3G14930.3 HEME1; uroporphyrinogen decarboxylase similar to HEME2, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT2G40490.1); similar to Uroporphyrinogen decarboxylase (ISS) [Ostreococcus tauri] (GB:CAL57745.1); similar to Os01g0622300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043610.1); contains InterPro domain Uroporphyrinogen decarboxylase (URO-D); (InterPro:IPR000257); contains InterPro domain Uroporphyrinogen decarboxylase HemE; (InterPro:IPR006361) -0.0354325761908831 -0.415546484367539 0.688155893843278 1 0.861076207665222 18.9376338965009 -0.0354325761908831 0.0751880533211262
AT1G08770_at 6.05597430672678 6.37758996378494 6.07004195511136 6.12611854260601 6.8494939309933 6.12130352778449 6.57824562685927 6.44608395484754 5.8889427014456 5.21939819991351 5.88518127492995 5.58225248529434 5.84412659958735 5.70027646327608 6.00910967983113 5.73891598423023 5.64933596634185 5.83965155499502 5.72297280524772 0.238089633685762 0.223261708733566 0.226450180851274 0.223261708733566 0.224306850190371 0.246752231791342 0.223261708733566 0.230900901997068 0.238907913398584 0.226713505593914 0.225829050571032 0.227695170665067 0.226447883545932 0.230044035932394 0.227639245029455 0.223800656439672 0.246173177102977 0.228920854821504 0.226849539586244 1 1 + 2809018 2809487 2809232.909 2808886 2809748 + gene protein_coding_gene FALSE TRUE AT1G08770.1 prenylated rab acceptor (PRA1) family protein similar to prenylated rab acceptor (PRA1) family protein [Arabidopsis thaliana] (TAIR:AT1G55190.1); similar to putative prenylated rab acceptor protein [Oryza sativa (japonica cultivar-group)] (GB:AAR87293.1); similar to Os03g0741600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051225.1); similar to Os03g0798400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051570.1); contains InterPro domain Prenylated rab acceptor PRA1; (InterPro:IPR004895) 0.0489671874638147 0.415182718787373 0.688411967900073 1 0.860921004632013 12.0238785527207 0.0489671874638147 0.139982845230134
AT3G58640_at 7.62286982094494 8.02510890767736 7.50372913379894 7.54682415678125 7.105849463209 6.9186763721513 6.76923599294766 7.15685756506396 7.65249970567898 7.03231409460705 7.55449643010378 7.44757230644937 7.17590268429147 7.8847352473707 7.28832772890513 7.64618024009864 6.96903299138206 6.95119726672306 7.27758400755935 0.157442058937520 0.155202593168109 0.164121933190953 0.167807591526081 0.157232190531207 0.169660905172059 0.15737601308187 0.154034230522369 0.177750466046241 0.16626548315807 0.153228237754907 0.156044175738452 0.153710991102710 0.161679027356559 0.168799156591304 0.155285142954907 0.170079246443495 0.163619850119515 0.163914432522452 3 3|0 -|/ 21698130 21699050 21698553.125 21697718 21704818 - gene protein_coding_gene FALSE TRUE AT3G58640.1|AT3G58640.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G31010.1); similar to HA-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06416.1); similar to Os02g0241600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046406.1); similar to Os01g0674100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043838.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.0404334737698115 -0.413645504244917 0.68949456343938 1 0.860266578551683 14.6738838671705 -0.0404334737698115 0.102225033887949
AT1G63120_at 7.46170445596596 7.53808623018203 7.2959643109984 7.36170858496848 8.18062848589275 7.62197616196888 7.90190810641683 7.95255525964758 8.33201466843785 7.52967677745335 7.77009607529207 7.77708941855378 7.86054257787456 7.95682884623036 7.66751358475892 7.70629435494722 7.5231961593797 7.72952415506578 7.32755594720129 0.158012630503308 0.146681647530043 0.153168052614673 0.148679264597931 0.152808400286237 0.154181423879646 0.152865396500814 0.154739230041479 0.158100507425877 0.157681017492647 0.143608153194949 0.143608153194949 0.152074138181717 0.148091359473001 0.149897707748192 0.143608153194949 0.168180150944427 0.150592427601004 0.166373388701550 1 1 - 23412742 23413472 23413116.727 23412541 23414480 - gene protein_coding_gene FALSE TRUE AT1G63120.1 ATRBL2 (ARABIDOPSIS THALIANA RHOMBOID-LIKE 2); serine-type endopeptidase AtRBL2 has been identified as a rhomboid protein involved in regulated intramembrane proteolysis (RIP). The enzyme has the proteolytic activity and substrate specificity comparable to the Drosophila Rho-1 protein. similar to rhomboid family protein [Arabidopsis thaliana] (TAIR:AT1G12750.2); similar to Os03g0116400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048759.1); similar to membrane protein [Saccharum hybrid cultivar H65-7052] (GB:AAA02747.1); similar to Os09g0525900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063723.1); contains InterPro domain Prismane-like; (InterPro:IPR011254); contains InterPro domain Rhomboid-like protein; (InterPro:IPR002610) -0.0396788058070021 -0.413436889207757 0.689641540482837 1 0.860177945656137 15.4036338382769 -0.0396788058070021 0.0986281082989278
AT1G15430_at 5.04694172692508 5.43510602493188 5.29102377603766 5.38300352105509 4.72010705228445 5.18255144612988 4.79218465155608 4.98484504511346 4.56112854205599 4.11921807509532 4.56937589358183 4.30340231543323 4.16305402868328 4.40573248237962 4.09800049895216 4.27000334299621 3.92828942501122 4.35211378679343 4.59455756233361 0.218065899670568 0.217945322631299 0.229248979898517 0.217816228456566 0.217692887514212 0.234394788265126 0.221538639634032 0.217165794881256 0.228232129886874 0.222195921362291 0.218696801394961 0.217446878286112 0.217165794881256 0.219775058245588 0.219140245197313 0.222777045814294 0.222170369548797 0.219292820761278 0.217165794881256 1 1 + 5305313 5305707 5305511.182 5304312 5306007 + gene protein_coding_gene FALSE TRUE AT1G15430.1|AT1G15430.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G80220.1); similar to Os01g0612600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043557.1); similar to Pm27 [Prunus mume] (GB:BAE48661.1); contains InterPro domain Protein of unknown function DUF1644; (InterPro:IPR012866) -0.0421597506771429 -0.412869635809961 0.690041261861314 1 0.859937156948379 9.44757767128279 -0.0421597506771429 0.110823190690728
AT1G29340_at 8.68786551322853 8.91048607783748 8.93671977941975 9.07822029082191 8.7154593244975 8.7008848315844 8.46117594849577 8.33760469278348 8.54208453721025 8.57943491830797 8.48708701100238 8.27021932499224 8.24392300001568 8.55041235158842 8.00879418187684 8.49173172619223 8.47317315533008 8.60577852768052 8.64009698814869 0.121951086802064 0.121532432562198 0.121274512207008 0.117915584142699 0.121709748325488 0.122242214506253 0.125390487040659 0.119109304221261 0.126692582477370 0.128232192805860 0.114331496007449 0.113178575207428 0.115657718783582 0.119138890693130 0.120468018619838 0.113178575207428 0.123256417524603 0.117597575124658 0.119561529188143 1 1 + 10266000 10266563 10266280.273 10264381 10266804 + gene protein_coding_gene FALSE TRUE AT1G29340.1 PUB17 (PLANT U-BOX17); ubiquitin-protein ligase Has E3 ubiquitin ligase activity. Required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato. similar to armadillo/beta-catenin repeat family protein / U-box domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G01830.1); similar to Avr9/Cf-9 rapidly elicited protein 276 [Nicotiana tabacum] (GB:AAP03882.1); similar to ACRE 276-like protein [Solanum tuberosum] (GB:ABK96801.1); similar to arm repeat containing protein [Brassica napus] (GB:AAB97738.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain U box; (InterPro:IPR003613) 0.0313612135535322 0.412095729987514 0.690586768754888 1 0.859609158728567 17.2178497528622 0.0313612135535322 0.0504728342865541
AT2G28910_at 10.9762965795369 11.1534473987652 11.3590052743475 11.1685258477452 11.6416646669240 11.3587129464144 11.1815339547731 11.1524998314096 11.7694548090606 11.7346115748219 11.8978547790512 11.5019215916301 11.5867464053124 11.6058577506186 11.4506945287335 11.7299410879216 11.1737044936519 11.6009419874910 11.7974896923810 0.079535666270672 0.0810067558504814 0.0841532477374801 0.0812736275126649 0.079291528677609 0.0840975515028981 0.0794661851441654 0.0809544396824966 0.0860363213395508 0.0788452818179467 0.0800574096952834 0.080163953058786 0.0809314865051824 0.0810160168982667 0.078710550458212 0.078710550458212 0.0900415919681992 0.0834493725850504 0.078710550458212 2 2 - 12423084 12423498 12423213.545 12422857 12424462 - gene protein_coding_gene FALSE TRUE AT2G28910.1 CXIP4 (CAX INTERACTING PROTEIN 4); nucleic acid binding / zinc ion binding Encodes a CAX-interacting protein (CXIP4). The gene product is located in the nucleus of GFP-CXIP4-expressing yeast cells. When transiently expressed in the tobacco leaves, GFP-CXIP4 locates to the nucleus as well as in discrete areas of the cytoplasm (which do not overlap with mitochondria). Identical to CAX-interacting protein 4 (CXIP4) [Arabidopsis Thaliana] (GB:Q84Y18;GB:Q8L8W3;GB:Q9ZV23); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01100.3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Zinc knuckle, putative [Medicago truncatula] (GB:ABE87974.1); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) 0.0336526060166675 0.411218030341093 0.691205668285219 1 0.859237883798326 22.9167824058924 0.0336526060166675 0.0667034215112978
AT2G16860_at 8.50302092332971 8.85180838836475 8.38614468677219 8.79174498494943 9.16519709292245 8.5787226995486 9.00679248336009 8.89586418649733 8.70108895382982 8.74152568009707 8.72641594409774 8.93561045855969 8.59415355510536 8.79577098082302 8.13940779088995 9.1047109030409 8.52328999841657 8.69264660740052 8.66122186936048 0.179148452094431 0.170831873099953 0.172591891097661 0.184562707566951 0.175880773007335 0.177006146169391 0.171109639789756 0.175421748210560 0.185322210555748 0.176481587387190 0.185158578698537 0.172410124542789 0.172243041207064 0.170149099145549 0.180779660076271 0.173512094489084 0.177229944955851 0.173328497077728 0.172656045666669 2 2|0 -|/ 7311223 7311856 7311489.333 7311001 7313753 - gene protein_coding_gene FALSE TRUE AT2G16860.1 GCIP-interacting family protein similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to HSP90 co-chaperone CPR7/Cyclophilin (ISS) [Ostreococcus tauri] (GB:CAL53491.1); similar to Os06g0711600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058551.1); contains InterPro domain mRNA splicing factor SYF2; (InterPro:IPR013260) -0.0480985919886026 -0.410326360402684 0.691834669769111 1 0.85886147592638 17.4675517378285 -0.0480985919886026 0.138705401859424
AT1G08780_at 7.7854132193604 7.86751897016467 7.67644208306106 7.27766586399458 7.80444231256418 7.7935735201747 7.62359892490823 7.67601397623814 7.22786217289649 6.96394987612061 7.46727448698066 7.19845597732056 7.00859942273523 7.34850150081692 7.3105415162741 7.36618032301119 7.09694004323582 6.98739278526252 7.38235797077441 0.170338531740976 0.166059713884383 0.169891418573332 0.164641897853487 0.170111447350327 0.170104263092178 0.169372820950716 0.168348994163901 0.173032001428262 0.163565367491583 0.170219397606779 0.163348462312318 0.162509915722987 0.166544917842303 0.165903733325993 0.160578648731276 0.163046961640696 0.169818569937888 0.168611913692063 1 1 - 2809980 2810984 2810468.909 2809783 2811194 - gene protein_coding_gene FALSE TRUE AT1G08780.1 prefoldin, putative Identical to Probable prefoldin subunit 4 (ABI3-interacting protein 3) (API3) [Arabidopsis Thaliana] (GB:Q9M4B5); similar to VIP3 protein [Zea mays] (GB:CAC35070.1); similar to Os03g0628900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050709.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain Prefoldin beta-like; (InterPro:IPR002777) -0.0342547886808902 -0.4099124635371 0.692126726585516 1 0.858687020338465 14.8952714905841 -0.0342547886808902 0.0710640280877378
AT1G80460_at 10.1500871574471 10.1513423704264 10.0679167872880 10.1542764478867 10.2136364702014 10.173380645532 9.83041561645724 9.80664074245592 10.1041653964883 10.1155200150953 9.92221227624401 10.0042426839987 9.80328683597179 9.82006013387088 9.71917465578272 9.9290280891602 9.79653728054792 10.0602575975953 10.0975703725642 0.085148103697401 0.0837688098172643 0.0852188237519358 0.0843024094845218 0.0834099643776183 0.0830173423574115 0.0841245744616768 0.0836632466872384 0.0880672150253159 0.0870146696394876 0.0835760907712453 0.0846099533027989 0.0876011438039834 0.086433029168095 0.0902180150998325 0.0835216490957425 0.0859973772474368 0.0871427573649628 0.0846120108362354 1 1 - 30251863 30252491 30252192.909 30251637 30254197 - gene protein_coding_gene FALSE TRUE AT1G80460.1|AT1G80460.2 NHO1 (NONHOST RESISTANCE TO P. S. PHASEOLICOLA 1); carbohydrate kinase Encodes a protein similar to glycerol kinase, which converts glycerol to glycerol 3-phosphate and performs a rate-limiting step in glycerol metabolism. This gene is required for both general and specific resistance against bacteria and fungi. Arabidopsis thaliana glycerol kinase (GLR1) mRNA.Involved in flagellin-induced non-host resistance to Pseudomonas. Coronatine partially suppresses flagellin-induced expression of NHO1. similar to Carbohydrate kinase, FGGY [Medicago truncatula] (GB:ABE79990.1); similar to glycerol kinase [Pandanus amaryllifolius] (GB:AAR88660.1); similar to glycerol kinase [Glycine max] (GB:AAR86687.1); contains InterPro domain Carbohydrate kinase, FGGY; (InterPro:IPR000577); contains InterPro domain Glycerol kinase; (InterPro:IPR005999)|similar to Carbohydrate kinase, FGGY [Medicago truncatula] (GB:ABE77908.1); similar to Carbohydrate kinase, FGGY [Medicago truncatula] (GB:ABE79990.1); similar to glycerol kinase [Glycine max] (GB:AAR86687.1); contains InterPro domain Carbohydrate kinase, FGGY; (InterPro:IPR000577); contains InterPro domain Glycerol kinase; (InterPro:IPR005999) -0.0281104339362135 -0.409343779566241 0.692528094026667 1 0.858447597885263 20.0622629658097 -0.0281104339362135 0.0169958205499224
AT3G24550_at 7.9052888966484 8.05497450486004 7.96275958447819 8.07165212763861 7.85071979405843 8.23659051705208 7.3457215022259 7.51332683888588 8.75541326358833 8.30042870750877 8.6309497085313 8.21672015876098 8.29716915247883 8.38322632154544 8.22127736521012 8.33827453202295 7.85486493632362 8.45591229430645 8.6063894728827 0.123511816926014 0.125944163217000 0.126941982208509 0.126371275741275 0.123947980009831 0.124695085393132 0.12218158714385 0.127432139813408 0.123571251615120 0.121430129713425 0.119480756493932 0.121372093711203 0.118835573553835 0.124661741344389 0.119624985983958 0.118835573553835 0.130958122609649 0.120573606943116 0.119286501654726 3 3|0 +|/ 8962369 8963284 8962989.444 8960265 8963575 + gene protein_coding_gene FALSE TRUE AT3G24550.1 ATPERK1 (PROLINE EXTENSIN-LIKE RECEPTOR KINASE 1); ATP binding / protein kinase encodes an ortholog of Brassica napus proline extensin-like receptor kinase. Expression of the brassica gene is induced by wounding and fungal infection. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G18470.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G49270.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT4G34440.1); similar to putative protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAV25281.1); similar to receptor protein kinase PERK1 [Brassica napus] (GB:AAK21965.1); similar to putative receptor protein kinase PERK1 [Glycine max] (GB:BAE46451.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0356623654029868 0.409313111411523 0.692549742001449 1 0.858434695294313 16.2945674490513 0.0356623654029868 0.0795394950134348
AT1G68920_at 5.41547510396296 5.26754840893736 5.37647060493876 5.65186061106291 5.81329788250726 6.2161371520598 4.72127069157434 5.14530902794019 5.15949911236873 5.4476514233791 4.8979552950574 4.78737094823757 4.81652898988242 4.80745207608028 4.27787757172583 4.81836015742492 5.47258545599369 4.75993946242935 5.50771538413442 0.201749090153890 0.204545504959245 0.208039070246938 0.203572887083442 0.206707235757278 0.213630296613696 0.202091912479048 0.207330385923490 0.207769300995354 0.203105321022521 0.200417501744454 0.211933250065036 0.205426846722694 0.208538904760039 0.202031159423207 0.206401983786581 0.207335096143501 0.205540900280436 0.198942599098158 1 1|0 +|/ 25920234 25921169 25920828.222 25918670 25921540 + gene protein_coding_gene FALSE TRUE AT1G68920.1|AT1G68920.2|AT1G68920.3 basic helix-loop-helix (bHLH) family protein similar to basic helix-loop-helix (bHLH) family protein [Arabidopsis thaliana] (TAIR:AT1G26260.2); similar to TA1 protein [Oryza sativa (japonica cultivar-group)] (GB:CAE00874.1); similar to Os06g0275600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057380.1); similar to Os09g0474100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063455.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) 0.0425887629241593 0.408847837560408 0.69287820512674 1 0.858239060684028 10.5516115443220 0.0425887629241593 0.114766683941923
AT1G29150_at 10.5226097999784 10.6951821640877 10.6481124060817 10.6997107619566 10.5729704671234 10.4962356297012 10.3226329132356 10.5818630254208 10.3612688313455 10.2368267205680 10.5062124946069 10.2777979215022 10.2402659817621 10.2614605060813 10.2178931546529 10.3262088339976 10.1665714265717 10.2817380607621 10.2859839560020 0.0838586241776499 0.0835878731881735 0.0864005921389531 0.0853268871509478 0.0833604871051714 0.0855748961450918 0.0838795926910278 0.0878860504414254 0.0975443452103242 0.0822088483608112 0.0820827257241983 0.0840327264046126 0.0841957709262064 0.0870430023045195 0.084912107163367 0.083229837368668 0.0964353819592801 0.0930407151286946 0.0837035964129051 1 1 + 10182035 10182458 10182274.545 10180504 10182689 + gene protein_coding_gene FALSE TRUE AT1G29150.1 ATS9 (19S PROTEOSOME SUBUNIT 9); binding specifically interacts with FUS6/COP11 via the C-terminal domain of FUS6/COP11 and associates with an ATPase subunit of the 19S proteasome regulatory complex, AtS6A. similar to FUS12 (FUSCA 12), binding [Arabidopsis thaliana] (TAIR:AT2G26990.1); similar to Proteasome component re (GB:ABE93374.1); similar to Os04g0444600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052894.1); similar to Os03g0576400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050534.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain PCI/PINT associated module; (InterPro:IPR013143); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.0318803593610082 0.408743030760629 0.692952203638098 1 0.858195021794595 20.8571455043468 0.0318803593610082 0.0562180261323709
AT3G27000_at 5.30715069347125 5.1422158328716 5.17627655536225 5.14788905517076 5.40131142708284 5.0596854899582 4.36446611175092 4.53908043320659 4.2452934967155 4.33107053409767 4.51982851871762 4.02464239509876 4.10074964401254 4.0869107198692 4.21260310077455 4.26430684033153 4.39176915486637 3.81278301132182 4.82236295662161 0.185980062140184 0.183094547017777 0.189194455031153 0.186269553292627 0.187045260374399 0.184240805147645 0.183162423832462 0.185588539390633 0.186019243738025 0.185922854306800 0.187234979514808 0.190067060935334 0.192803398352384 0.182295152454491 0.191284856594954 0.184235852722821 0.184624109185882 0.188933402199530 0.191023232105642 3 0|3 /|- 9954211 9955362 9954776.714 9953800 9957178 - gene protein_coding_gene FALSE TRUE AT3G27000.1 ARP2 (WURM); structural constituent of cytoskeleton encodes a protein whose sequence is similar to actin-related proteins (ARPs) in other organisms. its transcript level is down regulated by light and is expressed in very low levels in all organs examined. similar to actin, putative [Arabidopsis thaliana] (TAIR:AT2G42100.1); similar to putative actin related protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAD03487.1); similar to Os08g0369300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061655.1); contains InterPro domain Actin/actin-like; (InterPro:IPR004000) 0.0342596040237715 0.407243460984722 0.694011350746819 1 0.857566101218774 9.33873020099379 0.0342596040237715 0.0724369285045668
AT1G67800_at 7.99237594403729 7.78717440406741 8.32545578700872 8.25657375401965 7.57538281409288 7.2677625808951 6.53640013488934 6.23889253068183 6.93345678755186 6.11114749974294 5.40525149810333 6.23495032324809 5.97266244940163 6.09542732399149 5.73692129709503 6.4358088061777 5.58017537725817 5.87462565790519 6.64305759770851 0.191943161035977 0.194060361503775 0.19473472350218 0.189929728496069 0.191348316460526 0.195233850036147 0.189929728496069 0.191458993880849 0.199607089240023 0.190685115876066 0.191828385028709 0.190572784246817 0.197451943703992 0.192046929403297 0.202927402850951 0.190509977361078 0.198493791641683 0.202189757998806 0.192550871448882 1 1|0 -|/ 25424701 25425538 25425089.111 25424443 25427392 - gene protein_coding_gene FALSE TRUE AT1G67800.1|AT1G67800.2|AT1G67800.3|AT1G67800.4 copine-related|protein binding / zinc ion binding similar to copine-related [Arabidopsis thaliana] (TAIR:AT5G14420.2); similar to RING-finger protein [Capsicum annuum] (GB:AAX20031.1); contains InterPro domain Copine; (InterPro:IPR010734); contains InterPro domain von Willebrand factor, type A; (InterPro:IPR002035); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0360034302824614 0.406138914219797 0.694791947073893 1 0.857104271134973 13.7372681453692 0.0360034302824614 0.0829929084013864
AT3G11540_at 6.99719840454094 6.91286286257806 6.78683080535172 6.87279690266958 7.45647680493018 7.14816499858356 6.2940497603486 6.66510842470865 6.31533698625548 5.84429843873158 5.32344123888929 5.69931436756186 6.10582945395950 5.34293851326734 5.3918749094262 6.2503031409963 6.11662387104912 5.91683667801974 6.41110128947297 0.261000681472300 0.249883196859423 0.257594849204857 0.253864409718481 0.252152199623770 0.255416902229077 0.250857319788094 0.249815278284023 0.262692160633835 0.250889681010918 0.264108489883684 0.252730865884574 0.257749814771989 0.250071706043514 0.251160498162737 0.253294811301862 0.250524086974937 0.258304400975034 0.253304068154469 3 3 + 3636789 3637466 3637151.091 3632168 3637961 + gene protein_coding_gene FALSE TRUE AT3G11540.1|AT3G11540.2 SPY (SPINDLY); transferase, transferring glycosyl groups|SPY (SPINDLY) Encodes a N-acetyl glucosamine transferase that may glycosylate other molecules involved in GA signaling. Contains a tetratricopeptide repeat region, and a novel carboxy-terminal region. SPY acts as both a repressor of GA responses and as a positive regulation of cytokinin signalling. Identical to Probable UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase SPINDLY (EC 2.4.1.-) (SPY) [Arabidopsis Thaliana] (GB:Q96301;GB:Q56YX8); similar to SEC (SECRET AGENT), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G04240.1); similar to Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (EgSPY) (GB:Q8LP10); similar to Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (LeSPY) (GB:Q8RVB2); similar to Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (PhSPY) (GB:O82039); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to SEC (SECRET AGENT), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G04240.1); similar to Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (LeSPY) (GB:Q8RVB2); similar to Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (HvSPY) (GB:O82422); similar to Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY (PhSPY) (GB:O82039); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440) -0.0365438925004042 -0.405930451858692 0.69493931304864 1 0.857017244354797 12.8710065420303 -0.0365438925004042 0.086048959421663
AT3G01340_at 8.44135960153125 8.70931585729524 8.38492575657053 8.5262897230873 8.982027962308 8.69744505782428 8.83286347829732 8.54408891359934 8.57676550299187 8.14993118382335 8.46381973193043 8.3815123364734 8.39559842621678 8.38502331718345 8.48144354453525 8.04300943373873 8.30867246374447 8.319779978451 8.14195849471743 0.176482636229719 0.172643672049970 0.173137776274187 0.172668492646085 0.164435939056233 0.175473462699446 0.162126471083546 0.175141604960034 0.184268079875833 0.184167553181298 0.169103729768125 0.165455147419097 0.166400495571714 0.174439869155675 0.161218528024498 0.165294955570602 0.186048387150858 0.171671799627523 0.177010947926499 3 3 - 127634 128119 127961.182 127355 129001 - gene protein_coding_gene FALSE TRUE AT3G01340.1|AT3G01340.2 protein transport protein SEC13 family protein / WD-40 repeat family protein|nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G30050.1); similar to protein transport SEC13-like protein [Solanum tuberosum] (GB:ABC01897.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0367854195616908 0.405443849153295 0.695283354932196 1 0.856814269093126 16.9582441094200 0.0367854195616908 0.087587289866028
AT1G61670_at 7.78575011299704 8.60803005659812 7.43559457982556 7.45796042003733 8.7273593914247 7.80225225842924 8.20976269990699 7.93554121074474 6.96559157256147 7.33880088745001 7.65106416949516 7.60761526146726 7.7119613635653 7.94119847858906 6.87395877225617 7.55473017061563 7.58336360078314 7.7749937673954 7.2176582486981 0.320736351419186 0.325965769010923 0.35256746186295 0.351499760717947 0.363899776815197 0.336668225390253 0.324830425674083 0.339329888175723 0.335955335097456 0.320736351419186 0.320736351419186 0.320736351419186 0.326014601731881 0.324699923357427 0.372100148179140 0.320736351419186 0.352477916393439 0.369425451235599 0.346750780761867 1 1 + 22774953 22775873 22775290.167 22773694 22776091 + gene protein_coding_gene FALSE TRUE AT1G61670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G10980.1); similar to Os03g0334800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050031.1); similar to 12246 (GB:AAD21413.1); contains InterPro domain Lung seven transmembrane receptor; (InterPro:IPR009637) 0.0671822187425934 0.405071842572229 0.695546424369922 1 0.856659252508025 15.3759701417075 0.0671822187425934 0.219422474947173
AT2G31490_at 10.0266915190734 10.0175567293342 9.79300683554757 9.80533627116525 9.60133435993965 9.55558552073136 9.95410514721522 10.0490599951629 9.83840807659732 9.67515745136008 10.1387764956035 10.2311519058224 9.76811903940304 9.87736328305445 10.2774152908985 9.9492864772371 9.64340914194968 9.93638781916334 9.61756852693052 0.103069514938729 0.100437154033177 0.0986052007070042 0.100414020486816 0.099074047054419 0.104686543070013 0.104723964436073 0.103015830450854 0.103407873863054 0.109015500819532 0.104449420763239 0.104178736573251 0.104082345274589 0.102725688398057 0.101545836045666 0.101900966935899 0.109740715696670 0.0986426223743694 0.109567104231536 2 2|0 +|/ 13419137 13420053 13419369.2 13419060 13420323 + gene protein_coding_gene FALSE TRUE AT2G31490.1 similar to Os01g0750800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044256.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB63534.1) -0.0278384687524702 -0.404345627065771 0.6960601027564 1 0.85635702904103 19.6943928972399 -0.0278384687524702 0.0184324248837676
AT4G24520_at 8.72468198802188 8.51347371655574 8.42685689519013 8.17540401810139 8.75707021359195 8.95740361261186 7.67449840429338 7.83573396689604 8.36958693043744 8.22514101056937 8.04112220571135 8.00955315190927 8.01316731106518 7.98681938377505 7.74254955012667 7.86714926293302 8.12782871256614 8.02857944392171 8.30967655655135 0.140451276131152 0.142696699196919 0.141276896274562 0.146510263681081 0.141788606984896 0.145685178631445 0.143918895513167 0.144153150214245 0.147333285083278 0.146730679246345 0.139649608666524 0.143994264968523 0.144129180627067 0.146751811667446 0.147342505298530 0.140926566917236 0.143867567606142 0.140573950265798 0.143150646314938 4 4 - 12663250 12663979 12663700 12662851 12667171 - gene protein_coding_gene FALSE TRUE AT4G24520.1 ATR1 (ARABIDOPSIS CYTOCHROME REDUCTASE) Encodes a cyp450 reductase likely to be involved in phenylpropanoid metabolism. similar to ATR2 (ARABIDOPSIS P450 REDUCTASE 2) [Arabidopsis thaliana] (TAIR:AT4G30210.2); similar to NADPH:P450 reductase [Glycine max] (GB:AAN85869.1); similar to NADPH-ferrihemoprotein reductase (EC 1.6.2.4) - mung bean (GB:A47298); similar to NADPH-cytochrome P450 oxydoreductase isoform 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] (GB:AAK15259.1); contains InterPro domain FAD-binding; (InterPro:IPR003097); contains InterPro domain Flavodoxin/nitric oxide synthase; (InterPro:IPR008254); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain Flavodoxin-like; (InterPro:IPR001094); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.0338573139152025 0.402965221853778 0.697036969446603 1 0.855783991113856 16.5224224987097 0.0338573139152025 0.0721801565265504
AT3G14920_at 6.24871102222772 6.65950226659777 5.86758948153495 6.6933203292945 6.19508297235913 6.41074965708947 5.98904430567047 5.9150263164982 6.43017539574686 6.08625075354381 5.75947963243939 6.34512154526803 6.34041395807186 6.24562815099902 5.91243495650299 6.79615401227873 6.63094550480106 6.55035654641281 6.39830105232029 0.196124128341552 0.196924398328442 0.204145582179353 0.193982047116372 0.196091159095528 0.197191622608946 0.189368916179911 0.187913930000025 0.192888898953334 0.188919332840983 0.199126929618880 0.203600678114788 0.191436756620175 0.196702995513587 0.200219764938508 0.188280329591974 0.200369134242531 0.187971334571154 0.187913930000025 3 3 + 5019529 5020082 5019813.091 5018282 5020280 + gene protein_coding_gene FALSE TRUE AT3G14920.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G05480.1); similar to Peptide-N4-(N-acetyl-beta-glucosaminyl)aspara (GB:P81898) 0.0531361767320255 0.402236260863716 0.697553071672168 1 0.855482141434707 12.5611162216842 0.0531361767320255 0.164408457476543
AT3G63390_at 7.58409507058762 7.38221140270512 7.60511757594956 7.33844217130687 7.87561816114903 8.0816670136725 7.35375542376949 7.70730771642353 7.38505653605909 7.21246434552652 7.31973809067088 6.86499669762204 7.40496393431965 6.93269838362642 7.03355752838983 7.35865111814412 7.40691135405458 7.42392452344719 7.48893547698341 0.169138125834199 0.164487624009651 0.167022135381094 0.163624993299514 0.166406233713566 0.176481283888796 0.167788080883469 0.167782411206391 0.170063753400702 0.167621550827860 0.175296496813794 0.165971936537812 0.166586600849713 0.177335877819261 0.177958698714787 0.169001577762304 0.165646191484324 0.168548689410005 0.167371702804770 3 3 - 23422457 23422803 23422643.364 23422141 23422943 - gene protein_coding_gene FALSE TRUE AT3G63390.1 similar to Os11g0616200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068282.1); similar to putative protein [Zea mays] (GB:AAN40032.1); contains domain Protozoan pheromone proteins (SSF47014) 0.0371984557046887 0.402008033029927 0.697714690472218 1 0.855387744207206 14.9061929785991 0.0371984557046887 0.0914619913480876
AT1G08190_at 8.3185506723373 8.34769273387519 8.61395559686906 8.61039995534446 8.74758296883578 8.50373630334311 9.18597949060704 9.13478997970043 8.97138649601658 9.49896790536758 9.7693817056834 9.64858500056018 9.44351280039869 9.21668176829338 9.23887677834384 9.59056524133484 9.72842706226888 9.19460141850445 9.40436238679625 0.122561281190766 0.128443214908268 0.126101652734547 0.127006850266944 0.128927942166968 0.131798422942946 0.124196219085261 0.124289861160918 0.139665421302755 0.130107846419602 0.125567374014658 0.122561281190766 0.126147977653432 0.125888496374305 0.128845946260629 0.122758607539324 0.128781994707068 0.133265881515934 0.128602968831868 1 1 + 2572536 2573099 2572802.273 2567499 2573390 + gene protein_coding_gene FALSE TRUE AT1G08190.1 vacuolar assembly protein, putative (VPS41) Identical to Vacuolar protein sorting-associated protein 41 homolog (VPS41) [Arabidopsis Thaliana] (GB:P93043;GB:Q9SGE1); similar to hypothetical protein [Ipomoea trifida] (GB:BAF36333.1); similar to Vacuolar protein sorting-associated protein 41 homolog (GB:P93231); similar to putative vacuolar assembling protein [Ipomoea trifida] (GB:AAS79596.1); contains InterPro domain 7-Fold repeat in clathrin and VPS proteins; (InterPro:IPR000547); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0297110980823807 0.401501924019503 0.698073148000597 1 0.855178596122713 18.0680365799392 0.0297110980823807 0.0434168818967073
AT2G20820_at 10.3261502629272 10.2699522678244 10.2690917235599 10.3429026930760 9.92772785682726 9.76642224208904 10.0868593993108 10.3127934159217 10.1358199789977 10.1052237154313 10.124549905292 10.2710175617616 10.0131875531644 10.2136826461274 10.2380993902503 10.1944187171151 9.9634005889402 10.0903160749512 9.84083081320985 0.0943895722755688 0.0901395552469682 0.0943921176083733 0.0940524110670202 0.0924572731704549 0.0968406643655682 0.0940941038670316 0.0888123332862419 0.0907235891862865 0.0958880223302592 0.09144183851358 0.091078099631579 0.090803738481118 0.0917013871632594 0.090406476066847 0.0895530465932508 0.0986776946127861 0.0899815780431243 0.0940824617105123 2 2|0 +|/ 8971546 8972286 8971982.125 8971430 8972511 + gene protein_coding_gene FALSE TRUE AT2G20820.1|AT2G20820.2 similar to hypothetical protein [Capsicum chinense] (GB:CAJ13713.1) -0.0305550777269783 -0.401202931118908 0.698284950751241 1 0.855055157017487 20.2456752613153 -0.0305550777269783 0.0506527054705019
AT1G53210_at 11.2083070452243 11.5760907523720 11.2378738796446 11.2095722262359 11.6910750114633 11.4311692729880 11.6521026233410 11.6654941729775 11.3990445744029 11.4291766903010 11.5822691591995 11.7625897363121 11.7831445349854 11.6708972584033 11.2516890360299 11.7030438813019 11.4519650451290 11.6940337688547 11.4019794603027 0.109986879930344 0.107498544616698 0.114887283300597 0.110951532593718 0.109905057105979 0.117100332929965 0.114470519924334 0.107498544616698 0.122313309005475 0.110689859284606 0.113760711722956 0.107498544616698 0.108270313842809 0.117034153311159 0.115218766170869 0.107498544616698 0.112516217075726 0.113902732100555 0.110330003217124 1 1 + 19850635 19851150 19850935.455 19848300 19851504 + gene protein_coding_gene FALSE TRUE AT1G53210.1 sodium/calcium exchanger family protein / calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT2G34030.1); similar to putative drought-induced protein RDI [Oryza sativa (japonica cultivar-group)] (GB:BAD19956.1); similar to Os02g0247800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046432.1); similar to Os01g0212400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042378.1); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.0346555466478495 0.400572553600628 0.698731593529238 1 0.85479519518375 22.9702211034621 0.0346555466478495 0.0781234316711645
ATMG01360_at 5.62279387777019 7.851178568477 6.06626743418017 6.98686939696028 6.79005832088187 7.0123401254442 5.68754536573794 7.35416152084281 6.74009713815184 6.8351589611966 6.4363907794918 6.84898709145458 6.75846153459613 6.43587202536504 5.22557613196661 6.69275025961303 6.6814361842278 5.71267587430467 6.58455066093056 0.25431843976264 0.25748841894104 0.256573834909353 0.247170600999541 0.25508924870053 0.272398399687622 0.256347489149941 0.247483064613458 0.265798770270706 0.251029615316311 0.255087380212937 0.250260402147991 0.253736381928676 0.26446526508188 0.254290015600388 0.247170600999541 0.247170600999541 0.25788953554657 0.248634274359709 M M - 349872 350358 350068.636 349830 351413 - gene protein_coding_gene FALSE TRUE ATMG01360.1 cytochrome c oxidase subunit 1 Identical to Cytochrome c oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase polypeptide I) (COX1) [Arabidopsis Thaliana] (GB:P60620;GB:Q07063); similar to cytoplasmic male sterility-associated cytochrome oxidase subunit I [Brassica juncea] (GB:AAP58356.1); similar to cytochrome oxidase subunit I [Brassica juncea] (GB:AAW55635.1); similar to cytochrome c oxidase subunit 1 [Beta vulgaris subsp. vulgaris] (GB:NP_064063.1); contains InterPro domain Cytochrome c oxidase, subunit I; (InterPro:IPR000883) -0.142976432736284 -0.399933326203379 0.699184633212965 1 0.854531984543198 13.2058789872304 -0.142976432736284 0.508681369491953
AT3G17740_at 5.38065504547115 5.26239278533315 5.56197465870307 5.37075148899063 5.77672895187566 5.80647997901399 6.01675856948925 5.24335590655528 5.55175971307564 5.45534813673766 5.16026684841476 4.96688612669934 4.8282165032333 5.36690182822662 4.899773842604 5.65891680955011 5.5244252425536 5.47702702472468 5.44054453808727 0.195893812784905 0.182043539323997 0.194827865126105 0.191368042906418 0.194098123116079 0.194086155741389 0.187769583733456 0.183325042979732 0.198614968594581 0.188145199606949 0.190848056286860 0.187009655160815 0.192295344171533 0.185114384690403 0.182043539323997 0.183059985150841 0.192912469220761 0.194742121704034 0.199599808322052 3 3|0 -|/ 6068099 6068792 6068478.1 6067765 6072845 - gene protein_coding_gene FALSE TRUE AT3G17740.1 similar to Os02g0772500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048265.1); similar to Uncharacterized protein C14orf102 (GB:Q9H7Z3); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Protein of unknown function DUF1740; (InterPro:IPR013633) -0.0470279123912115 -0.399708386407102 0.699344085077611 1 0.85443945851358 10.9113134602878 -0.0470279123912115 0.139477020329096
AT3G11270_at 7.43390336703448 7.96002258673316 8.38929077713232 8.54612143867362 8.14977837979173 7.3513774583065 8.22586439135094 7.6921141233337 6.297875319065 6.76359110069619 6.45812092470475 6.38424554620547 6.3532616680397 5.91867352841019 6.26203445814488 6.83121461845953 6.73860599258512 6.35319505715676 6.66401590385304 0.291003577212673 0.289916006153606 0.303956527564222 0.300544718385502 0.296518053292871 0.313451163630489 0.303181946132504 0.289771139560845 0.297254932223177 0.295938282673447 0.289771139560845 0.292165609854121 0.289771139560845 0.29363968863557 0.297316647895884 0.289771139560845 0.314710246109610 0.299321045693206 0.303703149628864 3 0|3 /|+ 3530251 3531290 3530814.75 3528896 3531708 + gene protein_coding_gene FALSE TRUE AT3G11270.1 MEE34 (maternal effect embryo arrest 34) similar to ATHMOV34 (ASYMMETRIC LEAVES ENHANCER3) [Arabidopsis thaliana] (TAIR:AT5G05780.1); similar to 26S proteasome regulatory particle non-ATPase subunit8 [Oryza sativa (japonica cultivar-group)] (GB:BAB78487.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639) 0.0592120480190979 0.398923489569553 0.69990059395505 1 0.854116993079805 14.4623489396702 0.0592120480190979 0.191437154494104
AT2G24765_at 9.15884000852389 9.10241982478908 8.78277251356434 9.1063181925537 9.31186015097084 8.77316269326444 9.18390634766778 8.97513462374878 9.09967942264929 9.16545889627123 9.39724374113673 9.46312914221152 9.05252374302544 9.3839090268716 9.4825259911638 9.18857350957267 8.9765235223882 9.04516818865095 8.89692119215837 0.145653373881839 0.140896026868409 0.142224884673136 0.151483876560867 0.142197202781545 0.143267586850121 0.144424250946346 0.138489623168940 0.156558671558405 0.141542891453909 0.143013202310993 0.141531514503911 0.151640356665625 0.139115117037169 0.141201018913183 0.140530572512505 0.140768163337716 0.136999944040825 0.152531328811721 2 0|2 /|+ 10571059 10571866 10571546.444 10569805 10572277 + gene protein_coding_gene FALSE TRUE AT2G24765.1|AT2G24765.2 ARF3/ARL1/ATARL1 (ADP-RIBOSYLATION FACTOR 3); protein binding|ARF3/ARL1/ATARL1 (ADP-RIBOSYLATION FACTOR 3) GTPase required for Golgi targeting of GRIP domain proteins. AtARL1 binds directly to the GRIP domain of AtGRIP in a GTP-dependent manner Identical to ADP-ribosylation factor 3 (ARF3) [Arabidopsis Thaliana] (GB:P40940); similar to ATARFA1B (ADP-ribosylation factor A1B), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT5G14670.1); similar to ADP-ribosylation factor 1 (GB:Q96361); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687)|Identical to ADP-ribosylation factor 3 (ARF3) [Arabidopsis Thaliana] (GB:P40940); similar to ATARFA1B (ADP-ribosylation factor A1B), GTP binding / phospholipase activator/ protein binding [Arabidopsis thaliana] (TAIR:AT5G14670.1); similar to ADP-ribosylation factor 1 (GB:Q96361); contains InterPro domain ARF/SAR superfamily; (InterPro:IPR006689); contains InterPro domain ADP-ribosylation factor; (InterPro:IPR006688); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Guanine nucleotide binding protein (G-protein), alpha subunit; (InterPro:IPR001019); contains InterPro domain GTP-binding protein SAR1; (InterPro:IPR006687) 0.0415664787536336 0.398553493551148 0.700162995552638 1 0.853965195787826 18.2006615169623 0.0415664787536336 0.115005940884673
AT4G27040_at 7.55796105451328 7.63406574020496 7.81218735513833 7.43084488908513 7.8347429207419 7.8612895226311 7.49867106767175 7.75362219890882 7.88749199190386 7.58901564262666 7.79458568280726 7.42696117354686 7.63052436604271 7.82933173140855 7.21170196749682 7.54598036905633 7.49289268197992 7.33646199526383 7.70458580430942 0.184465349162702 0.17115916343036 0.175743803843368 0.182999614165813 0.167396563474193 0.176284161426134 0.171471389229666 0.170710123234446 0.174899614276772 0.17582777808574 0.166194379113184 0.177605121660815 0.165391556990860 0.168425394558946 0.171654848168589 0.165391556990860 0.177413191910448 0.183312909420684 0.165391556990860 4 4|0 -|/ 13573075 13573531 13573291.5 13572895 13575544 - gene protein_coding_gene FALSE TRUE AT4G27040.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G31960.1); similar to EAP30 subunit of ELL complex [Xenopus tropicalis] (GB:NP_001011185.1); contains InterPro domain EAP30; (InterPro:IPR007286) -0.0348949968776413 -0.398390196802142 0.700278819313081 1 0.853898243493921 15.3032161647270 -0.0348949968776413 0.0805994179600733
AT4G38350_at 6.8878681093815 6.95503448697678 6.73027467141302 6.60385691463853 7.59538929130446 6.8972618796874 6.91515847908918 6.7486028927751 6.95417540000579 7.1904608086668 7.23407305885907 7.20652672863016 7.03355012690646 7.16034314028439 6.7827485473026 7.33157303300355 7.27203153071983 7.31150411814303 7.33107890102028 0.19747042006615 0.20272414581009 0.220000188837360 0.197680330234845 0.201604711299024 0.193577432006909 0.207235344272768 0.202957570900343 0.197969770117462 0.204219984645691 0.195994962374709 0.205282576751113 0.198089487639852 0.210100542801457 0.204374241334329 0.193783046920264 0.203442760692130 0.205514117703922 0.200817933502297 4 4|0 -|/ 17958330 17960209 17959187.222 17958318 17966411 - gene protein_coding_gene FALSE TRUE AT4G38350.1 patched family protein similar to patched family protein [Arabidopsis thaliana] (TAIR:AT1G42470.1); similar to OSJNBb0078D11.11 [Oryza sativa (japonica cultivar-group)] (GB:CAD41413.2); similar to H0409D10.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66746.1); contains InterPro domain Niemann-Pick C type protein; (InterPro:IPR004765); contains InterPro domain Patched; (InterPro:IPR003392); contains InterPro domain Sterol-sensing 5TM box; (InterPro:IPR000731) 0.0440008897276973 0.398082914067003 0.70049679245723 1 0.85377232785391 14.0792385850143 0.0440008897276973 0.126651355675271
ATCG01060_at 9.81055289754386 10.5136186022824 10.2556833654931 10.8780534245472 9.61996566520248 9.90204213415202 10.0102665927116 10.5424124601667 10.9704512161662 11.5510950572065 11.4343868328995 11.5753401825761 11.15465010882 11.2463774052924 11.0485161666009 11.7554164907350 10.7695034442557 11.3997085223576 11.5632496279649 0.113526032942762 0.107953688824791 0.118370278406385 0.114072641250660 0.116219913519176 0.110909681752488 0.111468526140918 0.111831330374376 0.123979422537655 0.107774772594438 0.114416861187745 0.114122419646296 0.109346493346423 0.116374619709924 0.108597294834994 0.110345134872562 0.116393626763191 0.108415877603482 0.107049560796024 C C - 117320 117517 117412.091 117318 117563 - gene protein_coding_gene FALSE TRUE ATCG01060.1 Encodes the PsaC subunit of photosystem I. Identical to Photosystem I iron-sulfur center (Photosystem I subunit VII) (9 kDa polypeptide) (PSI-C) (PsaC) (psaC) [Arabidopsis Thaliana] (GB:P62090;GB:P07136;GB:P25252;GB:Q9MRU0;GB:Q9T2J4); similar to photosystem I subunit VII [Nuphar advena] (GB:AAZ04107.1); contains InterPro domain 4Fe-4S ferredoxin, iron-sulfur binding; (InterPro:IPR001450) -0.0594438652072311 -0.397833526210894 0.700673718997433 1 0.853670204484994 21.5213674067481 -0.0594438652072311 0.193046509757640
AT4G35840_at 4.53995708845523 5.40477012185632 4.84536159774557 4.93413997642701 4.63267697479963 4.97528489661695 4.85306225754374 5.27921168144528 4.96662835928491 4.23404523310292 4.87442095566845 5.23988384191873 4.86148072172998 5.69657332876274 5.19706616945599 4.58292814445952 4.70915434465471 4.36104536243961 4.76974394447846 0.246647631983501 0.248737365892875 0.244155765119422 0.258444470206591 0.251852576808136 0.263954014576357 0.249410883693659 0.256656729287767 0.256393481943154 0.250997987575059 0.245146800428841 0.244155765119422 0.25076376903775 0.247883296643674 0.244155765119422 0.249735055698325 0.258338076390279 0.244155765119422 0.247630268822961 4 4 + 16981491 16982232 16981988.857 16980965 16982368 + gene protein_coding_gene FALSE TRUE AT4G35840.1 zinc finger (C3HC4-type RING finger) family protein Identical to RING-H2 finger protein ATL4M (NEP1-interacting protein 1) (ATL4M) [Arabidopsis Thaliana] (GB:Q8GT75;GB:Q8GXV3;GB:Q9SZT2); similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT2G17730.1); similar to Os10g0544600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065202.1); similar to zinc finger protein [Fagus sylvatica] (GB:CAE54083.1); similar to putative NEP1-interacting protein 2 [Oryza sativa (japonica cultivar-group)] (GB:BAC79837.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0555644185431325 0.396670727263182 0.701498913289611 1 0.853194854492544 9.73162055149037 0.0555644185431325 0.177730316264799
AT1G10130_at 6.34532503912987 6.1834788572616 5.62310336180843 5.32014188512723 5.80265387068395 4.52602826626331 5.90047394265374 4.97035770856709 5.51751895202845 4.80543170854085 5.81340613531987 6.22336725330153 5.39715233589364 5.99690360181462 5.55590762636087 5.71990993945901 5.00365322515857 5.05519515809711 5.3545028272296 0.250800490531118 0.243973244004623 0.248450810590313 0.243973244004623 0.243973244004623 0.274013053535131 0.249364547487550 0.253638643034686 0.270536790597314 0.245126597884268 0.248137256111727 0.245710063842126 0.245631017664835 0.243973244004623 0.245115264627663 0.243973244004623 0.259809848042674 0.257824394750492 0.243973244004623 1 1|0 +|/ 3320585 3321711 3321186.857 3310932 3322215 + gene protein_coding_gene FALSE TRUE AT1G10130.1 ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3); calcium-transporting ATPase/ calmodulin binding type IIA Ca2+-ATPase Identical to Calcium-transporting ATPase 3, endoplasmic reticulum-type (EC 3.6.3.8) (ECA3) [Arabidopsis Thaliana] (GB:Q9SY55;GB:Q9SAV5;GB:Q9SMX2;GB:Q9SWS8); similar to ECA2 ("calcium-transporting ATPase 2, endoplasmic reticulum-type"), calcium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT4G00900.1); similar to ECA1 ("calcium-transporting ATPase 1, endoplasmic reticulum-type"), calcium-transporting ATPase [Arabidopsis thaliana] (TAIR:AT1G07810.1); similar to Calcium-transporting ATPase 3, endoplasmic reticulum-type, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98693.1); similar to putative P-type ATPase [Oryza sativa (japonica cultivar-group)] (GB:AAO38471.1); similar to Cation-transporting ATPase CA1 (GB:P54209); contains InterPro domain E1-E2 ATPase-associated region; (InterPro:IPR008250); contains InterPro domain ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; (InterPro:IPR001757); contains InterPro domain ATPase, P-type cation-transporter, C-terminal; (InterPro:IPR006068); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Calcium ATPase; (InterPro:IPR005782); contains InterPro domain ATPase, P-type cation-transporter, N-terminal; (InterPro:IPR004014); contains InterPro domain H+ transporting ATPase, proton pump; (InterPro:IPR000695) -0.0810289803864933 -0.396119708714728 0.701890096349347 1 0.852970066056363 10.9946977357829 -0.0810289803864933 0.279731983593267
AT1G26110_at 9.69594613425488 9.52219773896072 9.50142496550146 9.64493724137137 9.9631059992156 9.36272472919036 9.55240063942563 9.39558068840955 9.78621050205639 9.769069561737 9.56929375195397 9.6079167365861 9.71519560891102 9.79782815700875 9.44849202913484 9.8389773510493 9.47402191284877 9.66052729986675 9.83786725227533 0.0802906992386686 0.0818418687782111 0.080478666645376 0.081448370137857 0.0883019084323543 0.0824674684366398 0.0836154574102441 0.0825385676439242 0.0884047442242788 0.0812132664949347 0.0893132128913059 0.0829304496978554 0.0802906992386686 0.0817713927108741 0.0949907806842306 0.0802906992386686 0.087324407506723 0.0853194616232256 0.0825497855174597 1 0|1 /|- 9024604 9025148 9024876.889 9024332 9027745 - gene protein_coding_gene FALSE TRUE AT1G26110.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G45330.1); similar to hypothetical protein [Glycine max] (GB:BAB41197.1); contains domain UNCHARACTERIZED (PTHR13586:SF5); contains domain UNCHARACTERIZED (PTHR13586) -0.0410836162729844 -0.395433063680335 0.702377695613639 1 0.852690368961864 19.2981634560126 -0.0410836162729844 0.114246810144250
AT3G62130_at 6.48115047607782 6.38157850832344 5.94306274407589 5.87448502618676 7.26055287890799 6.14659040854303 6.05425868776561 6.35244134182536 5.12619175865564 5.53715963595803 5.14976878767145 5.59480786944352 6.05628130192558 5.74917900655175 5.13457059224733 5.97176340638684 5.62785885411108 5.24825680526742 5.63714797059119 0.244482585056585 0.245087388398236 0.235329893219546 0.238784717595821 0.235329893219546 0.239551561024634 0.237529473027064 0.239166288624477 0.246328005975667 0.246280148872318 0.245144637220187 0.237158488667803 0.235329893219546 0.241686245345040 0.240908253990618 0.235329893219546 0.249261937638842 0.235329893219546 0.241841799715567 3 3 + 23016756 23017303 23017042.636 23015906 23017981 + gene protein_coding_gene FALSE TRUE AT3G62130.1 epimerase-related similar to transaminase [Arabidopsis thaliana] (TAIR:AT5G26600.1); similar to Peptidase M, neutral zinc metallopeptidases, zinc-binding site [Medicago truncatula] (GB:ABE92211.1); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) 0.0609382752396816 0.39539511007897 0.702404651408248 1 0.852674922593175 11.8117953171394 0.0609382752396816 0.20065707005002
AT1G29220_at 6.8030502715323 6.90798263115176 6.54628959751943 6.55108384980366 7.33047015057926 6.90439067786903 6.89551855958736 6.82914110337689 5.93398417712391 6.71937279919821 6.72707028180326 6.94034289587337 6.23341878810938 6.90058527692325 6.13652101072006 6.69752371236187 6.15676729773755 6.32682873205262 6.61007818361128 0.208774550866274 0.209826153626535 0.22085487150337 0.228102117563363 0.208428788861679 0.211387484517484 0.217282303009103 0.211355989815491 0.245088165138171 0.215120888668347 0.220772645127311 0.210320574465492 0.215309863725173 0.227950717755657 0.222279158713483 0.214573904645270 0.238265734894116 0.228265060049323 0.214813399350859 1 1|0 -|/ 10210844 10211684 10211164.667 10210506 10212708 - gene protein_coding_gene FALSE TRUE AT1G29220.1 transcriptional regulator family protein similar to predicted protein [Gossypium hirsutum] (GB:AAT64035.1); contains InterPro domain HCNGP-like; (InterPro:IPR012479) 0.0339363118336546 0.394830242927078 0.702805889637663 1 0.852445201218618 13.3140045065569 0.0339363118336546 0.0768065394714949
AT1G17130_at 6.7387311116191 6.61786144833048 6.5747854948898 6.63797772079049 6.97524101987361 6.43281294119815 7.05884408941644 6.6800784900376 6.4339983704397 6.23831076083413 6.61050196334451 6.58503784707453 6.30643398716697 6.4596882776618 6.35947942627342 6.3794629871606 6.25046889434975 6.13145146361769 6.37643677545833 0.194627904292163 0.196803081675546 0.196519890813069 0.189861739971328 0.197802707353082 0.200396092132806 0.189861739971328 0.194981792816027 0.204088516849977 0.195311298669510 0.194270694070636 0.194151276922251 0.191863031761550 0.192187487678253 0.194752588050304 0.198608645448622 0.204077072950281 0.200122668624443 0.197153414652216 1 1|0 +|/ 5855222 5856408 5855989.556 5854141 5856690 + gene protein_coding_gene FALSE TRUE AT1G17130.1|AT1G17130.2 cell cycle control protein-related similar to cell cycle control protein-related [Arabidopsis thaliana] (TAIR:AT2G32050.1); similar to hypothetical protein DDBDRAFT_0205793 [Dictyostelium discoideum AX4] (GB:XP_641652.1); similar to Os01g0588700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043437.1); contains InterPro domain Protein of unknown function DUF572; (InterPro:IPR007590) -0.0414704268712269 -0.393867888182895 0.703489698916617 1 0.85205455587054 13.0819903268904 -0.0414704268712269 0.116897667435905
AT2G25670_at 7.56910257043984 7.89487792804597 7.55506629457553 7.77455983334826 7.46316634022789 7.58703446105114 7.38638624040861 7.64674654853906 7.62378542055522 7.67152100604735 7.65233393906912 7.8464318157655 7.67957108745233 7.70318724693 7.85061784816031 7.96472703025889 7.74933939532634 7.52868597857724 7.64651805753099 0.144347458347506 0.150638762643974 0.146545786918470 0.154583944171728 0.141604647503189 0.144284675778278 0.150135446647232 0.147432797020910 0.143305220575929 0.142766002407634 0.144371761444461 0.143776491100106 0.144319465667531 0.145224667145485 0.149523536361130 0.139500976520607 0.155471988929785 0.146432941562750 0.144541254005504 2 2 - 10936143 10936893 10936379.273 10935742 10938140 - gene protein_coding_gene FALSE TRUE AT2G25670.1|AT2G25670.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32610.1); similar to Os05g0179800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054805.1); similar to M355 [Lilium lon (GB:BAC81748.1) 0.0351326875451383 0.393666018685227 0.703633175151863 1 0.851972727973544 15.3066858374480 0.0351326875451383 0.0843253663245132
AT1G28120_at 8.16768927510797 8.45684539288266 7.96208317238206 7.84176811390174 8.52459842317506 8.13123226098096 8.14633012805243 8.26387504110625 7.37856216033725 7.4544813434632 7.6190560593275 7.13518716205705 7.46264469962862 7.7163475998279 7.68641561973368 7.49040572649981 7.24133695174045 7.19450692750062 7.2811788004321 0.190149124826463 0.18134456460747 0.188570779754709 0.178676236577787 0.184405723314921 0.201559616807962 0.182408048870940 0.184073110415032 0.193837195504450 0.180036725028161 0.178676236577787 0.182601870816072 0.189272089893081 0.184666152122364 0.178676236577787 0.181433778150554 0.188704015107604 0.187221565012278 0.181327184581748 1 0|1 /|- 9813311 9813871 9813452.889 9812946 9815531 - gene protein_coding_gene FALSE TRUE AT1G28120.1 Identical to Ubiquitin thioesterase otubain-like protein (EC 3.4.-.-) (Ubiquitin- specific-processing protease otubain-like) (Deubiquitinating enzyme otubain-like) [Arabidopsis Thaliana] (GB:Q8LG98;GB:Q9C7E1); similar to putative ubiquitin-specific protease otubain 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD01239.1); similar to Os08g0537800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062367.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) -0.0359671540660513 -0.392874865104325 0.704195598443724 1 0.851652422315371 15.5941252399655 -0.0359671540660513 0.0893606960539373
AT3G60210_at 7.9200414360784 8.12393518018812 7.36712573660394 7.49211706200453 7.77824910872667 7.90441306966727 7.7269616107315 7.90599890186342 7.83662705122787 7.90068993237386 8.49686590678823 8.20879276140975 7.80333120333653 8.4308770483994 8.50079819964119 8.35323553143444 7.98994399200103 8.22346264743194 7.98042544486047 0.136479085310653 0.134355183259956 0.133105978426612 0.140617054264955 0.135230169979462 0.143591857636462 0.133781051488958 0.143373864050045 0.140566405379332 0.135720115648090 0.131675507379523 0.133172557751967 0.137135200742525 0.139047958165206 0.140328152051318 0.133045159809224 0.149190208500261 0.135773427094005 0.13972852606083 3 3|0 -|/ 22262421 22263658 22263077.25 22262198 22263873 - gene protein_coding_gene FALSE TRUE AT3G60210.1 chloroplast chaperonin 10, putative similar to CHL-CPN10 (chloroplast chaperonin 10) [Arabidopsis thaliana] (TAIR:AT2G44650.1); similar to chloroplast chaperonin 10 [Brassica rapa] (GB:ABK78693.1); contains InterPro domain Chaperonin Cpn10; (InterPro:IPR001476); contains InterPro domain GroES-like; (InterPro:IPR011032) 0.0306206152599116 0.392759697796227 0.704277485776313 1 0.851605847456908 15.855769040296 0.0306206152599116 0.0561207461764546
AT4G11570_at 11.1982016075051 11.1578593443812 11.5398038728855 11.495821306724 11.4684154954729 11.4047361160948 11.8187747763590 11.6876545925501 11.8523188298091 11.8707297377890 11.9787246831385 11.5452053605265 11.6255934096623 11.8630173603837 11.4971306314484 11.9867081716271 11.7644764386764 11.7557128077126 11.7332021129988 0.0632488646229077 0.0622617929577565 0.0622617929577565 0.0622617929577565 0.0622617929577565 0.0643050639740202 0.0626886337661153 0.062592600616934 0.0718627674723995 0.0650852239649497 0.0622617929577565 0.0624988670255277 0.0638511242435397 0.0648317355825838 0.06432358671999 0.0631472888272795 0.0699253950103768 0.0659375445020298 0.0633936000029727 4 4 + 7005266 7005822 7005558.091 7004327 7006075 + gene protein_coding_gene FALSE TRUE AT4G11570.1|AT4G11570.2 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G10970.1); similar to Histidine acid phosphatase; HAD-superfamily hydrolase subfamily IA, variant 3 [Medicago truncatula] (GB:ABE92120.1); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) -0.0275537506866397 -0.392341567011559 0.704574823231946 1 0.851436861401282 23.2568190563779 -0.0275537506866397 0.0272579116105665
AT1G14560_at 5.36135939688058 5.62154313453126 5.35270643391936 5.09205146351724 6.76772790228829 5.72845552728726 6.10517861001345 5.62547627275786 5.68765292330363 5.88226455715722 5.60481924673162 5.85338372961 5.84913389172636 5.95562325118438 5.62750477423324 5.89656570308456 5.91100741376599 5.56066179193573 6.3209477158491 0.231437520326891 0.225072358653713 0.232065394439557 0.226779374374363 0.237072679419284 0.225272569149457 0.228488686112775 0.226138180213864 0.241238316798728 0.225935295338816 0.233276587395641 0.236465183763627 0.226381242031433 0.231248919333339 0.236921778167872 0.225888140081189 0.229495526569720 0.235106137230601 0.246010565208622 1 1|0 +|/ 4981949 4983043 4982491.2 4980667 4983279 + gene protein_coding_gene FALSE TRUE AT1G14560.1 mitochondrial substrate carrier family protein similar to mitochondrial substrate carrier family protein [Arabidopsis thaliana] (TAIR:AT4G26180.1); similar to mitochondrial carrier protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAB90009.1); contains InterPro domain Graves disease carrier protein; (InterPro:IPR002167); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.0622191393060414 -0.391950916932474 0.704852667291825 1 0.851279137994988 11.5797919463431 -0.0622191393060414 0.208086125727154
AT4G08230_at 6.7324878972991 7.17414738437611 7.82866427244647 7.20936546871574 7.01492709483207 6.73250370130031 6.69840889959841 6.79023228859373 7.51152695843438 7.72624484592981 7.75177006668176 7.30256745982076 7.35833080631662 7.41407732415731 7.46479663328986 7.27559050596655 6.87458845649487 6.91270726875826 7.40975181867832 0.282613187356473 0.260622567591123 0.248542477902245 0.248542477902245 0.264804479532337 0.264872122845847 0.280996406513723 0.271118128274848 0.248542477902245 0.248542477902245 0.248542477902245 0.255982556617455 0.261141163601199 0.259924470896798 0.258424063079777 0.27141620114277 0.261268556187895 0.275023772104274 0.248542477902245 4 4 - 5188190 5188332 5188265.8 5187782 5189638 - gene protein_coding_gene FALSE TRUE AT4G08230.1 glycine-rich protein similar to glycine-rich protein [Arabidopsis thaliana] (TAIR:AT1G75550.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP06860.1); similar to Os03g0263700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049636.1) 0.0463375205141954 0.390396638988057 0.705958587092589 1 0.850653101451593 14.4443311789952 0.0463375205141954 0.141311464468897
AT4G02720_at 8.64804440213775 8.8434807051422 8.5387152557795 8.83886109114379 9.21792661083662 8.91377935446183 8.90188374688276 9.04228326320517 8.29962776832034 8.5715644277369 8.64669626259265 8.54576914973372 8.7311585911908 8.6116737555389 8.21044467690212 8.81202909505929 8.77733215847772 8.67412593833815 8.85369810342955 0.122977603927651 0.118451365774004 0.119460353025956 0.118869420780934 0.122706162442692 0.121663297088894 0.125898368621221 0.120947463328340 0.141122011180859 0.122532175765511 0.126470763133993 0.120887313577902 0.121467131789870 0.133515894411778 0.127873403916986 0.11858780969102 0.130586853998889 0.130027160864337 0.124255184184701 4 4 - 1204572 1204934 1204759.273 1204303 1205866 - gene protein_coding_gene FALSE TRUE AT4G02720.1 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to Os09g0455400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063358.1); similar to hypothetical protein PY05066 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_725465.1); contains InterPro domain Protein of unknown function DUF926; (InterPro:IPR009269) 0.0347939095151852 0.388805276830823 0.707091657937267 1 0.850014607765511 17.4686803720194 0.0347939095151852 0.084867469608996
AT4G25660_at 7.5434292333481 7.69577922041142 7.42647421147658 7.5376569824716 8.09750782512169 7.97085066613481 7.83883762741512 8.21861423918919 8.09582625395516 7.79763068057854 8.15520491392817 7.96454158220607 7.98768637427519 8.21037705737525 7.76600131483848 8.05701103716948 7.1015776303586 8.18970858081742 7.49555837891878 0.198240358793159 0.170795914618373 0.186415415719568 0.183309020706594 0.169252432048318 0.179773107208733 0.183122499887446 0.177625433337190 0.17970065671399 0.175133328875301 0.178043124013619 0.174924562587052 0.173737352685488 0.178179866599438 0.168592704045486 0.174087164857115 0.179030899676523 0.179308554620142 0.183099829265968 4 4|0 +|/ 13084234 13084932 13084564.7 13083416 13085195 + gene protein_coding_gene FALSE TRUE AT4G25660.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25680.1); similar to Protein of unknown function DUF862, eukaryotic [Medicago truncatula] (GB:ABE85315.1); similar to Os10g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065158.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) 0.0333162323819016 0.388042836875279 0.707634798557862 1 0.84970958742644 15.6538197502904 0.0333162323819016 0.0765841557098187
AT4G36890_at 6.84174263437139 7.16533482872112 7.18452226906123 7.1535885265896 7.5148830304028 7.14862118125142 7.851036839403 7.81652991832224 6.90331349166283 6.75135377205875 6.74527440595953 6.94363432461627 6.99831520042163 7.19632693709253 6.88643649581056 6.97327218880152 7.24577600049821 7.2447689194868 6.72015196530697 0.186663766604446 0.168575336572601 0.178680487167188 0.172651776883881 0.168575336572601 0.174603857105991 0.175389799170857 0.168575336572601 0.173974831933660 0.175807962384243 0.169839555179084 0.173221766523231 0.183742293116715 0.181903461970071 0.186285114317559 0.174715671550164 0.189770846961289 0.177090106358537 0.176742822063849 4 4|0 -|/ 17379639 17380451 17380032.8 17379173 17381777 - gene protein_coding_gene FALSE TRUE AT4G36890.1 glycosyl transferase family 43 protein similar to glycosyl transferase family 43 protein [Arabidopsis thaliana] (TAIR:AT5G67230.1); similar to glycosyltransferase [Gossypium raimondii] (GB:CAI93186.1); similar to glycosyltransferase [Poncirus trifoliata] (GB:CAI94901.1); similar to glycosyltransferase [Glycine max] (GB:CAI94900.1); contains InterPro domain Glycosyl transferase, family 43; (InterPro:IPR005027) 0.0346809230157574 0.387367924249744 0.70811573462335 1 0.849440063990012 14.2449483878964 0.0346809230157574 0.0849568465175118
AT3G19340_at 8.63322817925611 8.52841403399586 8.56370506119004 8.30609791663379 8.9921646502112 8.50685849303436 9.34412234106121 9.01538836065403 8.7004289390629 9.07140072447647 9.13081215495343 9.44814768500608 9.246134717872 9.2675517969523 9.09850008081757 9.26088914810362 8.60900928815931 8.98218458967783 8.9938136956847 0.122079200891508 0.123473204436396 0.130494096192939 0.123196308556519 0.121412159215601 0.127704404799613 0.124302692222078 0.123179877796186 0.124632409924460 0.122543062958617 0.126622477110828 0.120616932451505 0.121766122095159 0.127989003185687 0.121868289539306 0.120778044157653 0.137363188849500 0.121502449627641 0.126282159796257 3 3|0 -|/ 6701408 6702255 6701792.111 6701279 6704232 - gene protein_coding_gene FALSE TRUE AT3G19340.1 sodium:dicarboxylate symporter similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G13940.1); similar to Os11g0528400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068003.1); similar to Os12g0479900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066766.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL54603.1); contains InterPro domain Sodium:dicarboxylate symporter; (InterPro:IPR001991) -0.0397795677615191 -0.386706690827923 0.70858705710568 1 0.849176441333084 17.7623897807216 -0.0397795677615191 0.112277079295317
AT3G56630_at 7.48789380481799 7.86300817116497 8.17623702602063 7.95219502242998 7.90668325749889 7.35251459877449 8.01349008203282 8.05516791322104 7.11240622422237 7.76777905651116 7.20875571034339 7.47957196478259 7.54123967852552 7.51361004252448 7.11460922860275 8.10330463109726 7.57804795895851 7.1289748287191 7.72221573841987 0.178571625341196 0.179034108897607 0.180067896362498 0.177179784336934 0.171877521631063 0.185220582644672 0.174486851058710 0.181014791960194 0.189509131442287 0.171702726768538 0.177033158024890 0.176300754312782 0.170266979385579 0.175013827315355 0.175156503575938 0.170877602599202 0.179384154700691 0.177965280051419 0.170266979385579 3 3 + 20991044 20991434 20991209.818 20989923 20991611 + gene protein_coding_gene FALSE TRUE AT3G56630.1 CYP94D2 (cytochrome P450, family 94, subfamily D, polypeptide 2); oxygen binding member of CYP94D similar to CYP94D1 (cytochrome P450, family 94, subfamily D, polypeptide 1), oxygen binding [Arabidopsis thaliana] (TAIR:AT1G34540.1); similar to E-class P450, group I [Medicago truncatula] (GB:ABE79844.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0418009671175716 -0.386355409120107 0.708837502125333 1 0.849036567594647 15.3472226987428 -0.0418009671175716 0.122336985903737
AT3G57290_at 9.14946963697339 9.10538528487481 8.78424526165877 8.71831415828344 8.7220244403211 8.74855942971545 8.77469824158044 9.1856810301968 8.30600128662165 8.46028619062638 8.76493106483392 8.96169322240462 8.66254466300014 8.6708469923314 9.323247414286 8.62219718894954 8.59024080586722 8.48586002335498 8.38779564243285 0.135764963158386 0.128294466451871 0.132500075077379 0.134355076719968 0.135506726716501 0.127254045913275 0.135213843905928 0.137151002616583 0.135607034708280 0.129769735273544 0.135501925489774 0.125908835576553 0.133517877705488 0.131047526727764 0.128162622693509 0.128845672712719 0.135779139213941 0.126302792535870 0.135273965045783 3 3 - 21207765 21208672 21208297.8 21207529 21210162 - gene protein_coding_gene FALSE TRUE AT3G57290.1 EIF3E (eukaryotic translation initiation factor 3E) Encodes a protein that is found in not only the eif3 complex but also in association with subunits of the COP9 signalosome. similar to Os07g0222300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059202.1); similar to eukaryotic initiation factor 3e [Oryza sativa (indica cultivar-group)] (GB:ABK34475.1); similar to eukaryotic initiation factor 3e [Oryza sativa (japonica cultivar-group)] (GB:ABK34467.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Proteasome component region PCI; (InterPro:IPR000717) 0.0324890363699240 0.385927159924316 0.709142871390384 1 0.848866212424731 17.4709919580032 0.0324890363699240 0.072580144907713
AT1G53000_at 6.08419690057778 6.32762050443932 5.52178802064253 5.89106020995712 5.73684527451564 5.94864748203205 5.81102973577437 6.02644164015619 6.47542685075341 5.84493376486659 6.84851239059396 6.78562924516192 6.38718177324702 6.6334611690411 7.38657521446644 6.27211741204726 6.00567155539158 6.56685250820303 6.43307845579364 0.209616924815578 0.196937648820209 0.200437245085636 0.196212845861765 0.209906494033162 0.216836472770084 0.202256613030778 0.200823714259811 0.206394342337219 0.197387990001409 0.20223248617126 0.213490127916489 0.199494164738254 0.198612135176195 0.201565475292081 0.197364354737085 0.198817998456419 0.203230759121782 0.2029273695297 1 0|1 /|- 19749259 19750285 19749747.444 19748714 19750913 - gene protein_coding_gene FALSE TRUE AT1G53000.1 cytidylyltransferase family similar to CMP-KDO synthetase [Zea mays] (GB:CAB89846.1); similar to Os05g0561500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056314.1); contains InterPro domain Acylneuraminate cytidylyltransferase; (InterPro:IPR003329); contains InterPro domain 3-deoxy-D-manno-octulosonate cytidylyltransferase; (InterPro:IPR004528) 0.0359334264655429 0.385917170962839 0.709149994825972 1 0.848862241042158 12.3494019788403 0.0359334264655429 0.0926900334044662
AT1G72810_at 4.76558778437116 4.66017553532429 4.80939018454472 4.40528119362242 5.00344704104998 5.2786800279198 6.61335689118854 6.21272763442014 4.37102518134152 5.83214551747073 5.94020654141313 5.8877104323583 6.016317292957 5.69748555634624 5.78330953840453 5.54548551603186 6.01567505868719 6.33689946891574 5.20362650908351 0.202554517650976 0.185228564766522 0.190849695111760 0.191914899891912 0.187326974415675 0.185362433609846 0.193240005724585 0.191285231721726 0.193722835172422 0.189872837429193 0.18846847003191 0.196256812666748 0.191187049149898 0.195319440490044 0.19204570778314 0.192136838292586 0.197823391834870 0.200308369918974 0.196006080153916 1 1 - 27402486 27402993 27402776.727 27402253 27404079 - gene protein_coding_gene FALSE TRUE AT1G72810.1 threonine synthase, putative similar to MTO2 (METHIONINE OVER-ACCUMULATOR), threonine synthase [Arabidopsis thaliana] (TAIR:AT4G29840.1); similar to Threonine synthase, chloroplast precursor (TS) (GB:Q9MT28); similar to Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula] (GB:ABE81529.1); similar to threonine synthase (GB:AAB04607.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Threonine synthase; (InterPro:IPR004450) 0.0392623783994313 0.384346407751347 0.710270529655172 1 0.848238973319284 10.7378234090240 0.0392623783994313 0.110899933759098
AT4G17190_at 4.80921282321073 4.95994210486063 3.57872835356497 3.2892882310712 4.32033950137766 4.16679713086813 4.576659597769 4.26917422697693 4.36318589026672 4.79267137846029 5.715003767618 6.52677621539567 5.29401966252525 5.48597996626599 7.0862199330285 5.23636961804434 4.47050644460212 4.9660623772932 4.98934002863804 0.222438679336463 0.214333865037101 0.217027758158228 0.220576535193996 0.217138305359539 0.227681253634755 0.222118975873732 0.219600522135130 0.237655615036273 0.222462433673946 0.214333865037101 0.215543667036476 0.221211667043015 0.224290690514942 0.233278257501094 0.215779087413680 0.222404502454847 0.229142209241205 0.224171907235773 4 4|0 -|/ 9648817 9650080 9649472.286 9648538 9650923 - gene protein_coding_gene FALSE TRUE AT4G17190.1|AT4G17190.2 FPS2 (FARNESYL DIPHOSPHATE SYNTHASE 2); dimethylallyltranstransferase/ geranyltranstransferase Encodes a protein with farnesyl diphosphate synthase activity, which catalyzes the rate limiting step in isoprenoid biosynthesis. Its mRNA is most abundantly expressed in flowers. Identical to Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] (FPS2) [Arabidopsis Thaliana] (GB:Q43315); similar to FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1), dimethylallyltranstransferase/ geranyltranstransferase [Arabidopsis thaliana] (TAIR:AT5G47770.1); similar to farnesyl pyrophosphate synthase [Malus x domestica] (GB:AAM08927.1); similar to farnesyl diphosphate synthase [Hevea brasiliensis] (GB:AAM98379.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949)|Identical to Farnesyl pyrophosphate synthetase 2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2) [Includes: Dimethylallyltranstransferase (EC 2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)] (FPS2) [Arabidopsis Thaliana] (GB:Q43315); similar to FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1), dimethylallyltranstransferase/ geranyltranstransferase [Arabidopsis thaliana] (TAIR:AT5G47770.1); similar to farnesyl pyrophosphate synthase [Malus x domestica] (GB:AAM08927.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) 0.0337962991622233 0.383114792193466 0.711149647475007 1 0.8477519896996 9.4026092531549 0.0337962991622233 0.0820172151797065
AT3G58530_at 5.61492992114018 7.06675966824869 5.44936792351364 5.56597281589563 6.76988295365077 5.75559783058216 5.56997829277021 5.31388289589292 4.84135788397131 4.95079602116481 4.96732318339589 4.77732824066493 4.46016847540214 4.58812835497673 4.63359092322491 4.44063677218433 5.10267481367081 4.90879715088466 4.90955102705605 0.263523373315566 0.266685773589232 0.275603619297053 0.265448051346539 0.275336060321808 0.271592887303441 0.269976470029694 0.272389928890477 0.280028850513499 0.259581886784983 0.268254683746373 0.268642416879295 0.26156912894518 0.265245406238555 0.270132586868855 0.259440561970665 0.267584094343711 0.270797497981987 0.259440561970665 3 3|0 +|/ 21658139 21659153 21658627.286 21656524 21659345 + gene protein_coding_gene FALSE TRUE AT3G58530.1 F-box family protein-related similar to protein binding [Arabidopsis thaliana] (TAIR:AT5G23340.1); similar to putative F-box protein FBL2 [Oryza sativa (japonica cultivar-group)] (GB:BAD22408.1); contains InterPro domain Leucine-rich repeat, cysteine-containing subtype; (InterPro:IPR006553); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) -0.0859598175163107 -0.382735624565647 0.711420386370786 1 0.847602369118264 10.7059961877274 -0.0859598175163107 0.310331236867239
AT2G22120_at 5.38161880620591 5.51690616146559 4.86155761122792 5.50444271543102 5.87888381985876 5.25562021826554 5.00143813248842 5.40283963706331 4.80164000720954 3.9995117303887 3.9996616127678 4.22043270291495 4.69649165673141 4.68192669432419 4.46896082447411 4.64426061361490 4.27242869781557 4.32462491666685 4.27538294466524 0.229885360147198 0.229788625324381 0.241178261900209 0.233160476734545 0.230639904843378 0.251272649478805 0.235881841666118 0.231727844384952 0.243500785908655 0.234349503292475 0.228455867522937 0.227025061510710 0.226921177987359 0.2386083619279 0.228103049572071 0.227162785480022 0.234157956506334 0.230077569393315 0.228918158932732 2 0|2 /|+ 9402007 9403816 9402955.8 9400903 9404102 + gene protein_coding_gene FALSE TRUE AT2G22120.1 protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G11020.1); similar to hypothetical protein 185.t00015 [Entamoeba histolytica HM-1:IMSS] (GB:XP_651061.1); similar to Os11g0604600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068240.1); similar to Os08g0384900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061703.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0520894888579505 0.382225380718079 0.711784786457516 1 0.847401250815817 9.73663506725158 0.0520894888579505 0.171418887390574
AT4G16950_at 9.13759976997412 9.19532555157308 9.05419328428103 8.9841486057485 9.3846246991417 8.89320766037809 8.88996560842106 8.81166106584593 8.91548955734063 8.38655330914354 8.76545746665235 8.47662156506373 8.8959023685559 9.0117935379663 8.38720001780631 8.57064142464379 8.052158941707 9.01869800097366 8.64309611430401 0.282498068632516 0.290993239748276 0.303076443720138 0.300999249663012 0.310267015352716 0.300271228038075 0.298763372485336 0.282498068632516 0.316479710131542 0.291140090544606 0.289256697150253 0.300210804651059 0.316102888840172 0.282498068632516 0.297360079412527 0.282498068632516 0.299965647946619 0.289750523464650 0.295211121802916 4 4|0 -|/ 9539795 9539866 9539827.75 9538821 9544486 - gene protein_coding_gene FALSE TRUE AT4G16950.1|AT4G16950.2 RPP5 (RECOGNITION OF PERONOSPORA PARASITICA 5) Contains a putative nucleotide binding site and leucine-rich repeats. Similar to the plant resistance genes N and L6, and to the toll and interleukin-1 receptors. Confers resistance to Peronospora parasitica. similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) [Arabidopsis thaliana] (TAIR:AT4G16860.1); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713)|similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16920.1); similar to SNC1 (SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1) [Arabidopsis thaliana] (TAIR:AT4G16890.1); similar to RPP4 (RECOGNITION OF PERONOSPORA PARASITICA 4) [Arabidopsis thaliana] (TAIR:AT4G16860.1); similar to TIR; Disease resistance protein; AAA ATPase [Medicago truncatula] (GB:ABD28703.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0346675342960898 0.382200705333038 0.711802410822848 1 0.847391531291488 17.6916851935124 0.0346675342960898 0.0875357002708216
AT3G26310_at 6.14067899643183 5.9277560504894 6.33022344779359 6.10585277376033 6.7821913892364 6.54506042665897 7.323318245729 6.96089538145297 6.63201705932072 6.73178814490571 6.51896520963006 6.65439769794406 6.93111038079394 7.39387984627337 6.16360317885234 6.84123279984456 7.41132568881258 6.28884485439847 6.73330071401139 0.184994483168878 0.191532642382454 0.178846169629152 0.181925895300449 0.189557522571888 0.182663874266628 0.186639489178724 0.187636195992381 0.204583977504109 0.176787170261979 0.177993071528193 0.181242100239751 0.183936176331411 0.187434527333087 0.199737945263456 0.176684663553719 0.207048899389363 0.192159494293586 0.182428156846248 3 3 - 9642343 9642861 9642619.545 9642326 9644016 - gene protein_coding_gene FALSE TRUE AT3G26310.1 CYP71B35 (cytochrome P450, family 71, subfamily B, polypeptide 35); oxygen binding putative cytochrome P450 Identical to Cytochrome P450 71B35 (EC 1.14.-.-) (CYP71B35) [Arabidopsis Thaliana] (GB:Q9LIP5;GB:Q53XE2); similar to CYP71B34 (cytochrome P450, family 71, subfamily B, polypeptide 34), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26300.1); similar to CYP71B37 (cytochrome P450, family 71, subfamily B, polypeptide 37), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26330.1); similar to CYP71B26 (cytochrome P450, family 71, subfamily B, polypeptide 26), oxygen binding [Arabidopsis thaliana] (TAIR:AT3G26290.1); similar to cytochrome P450 [Citrus sinensis] (GB:AAL24049.1); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0354727540870399 -0.382108980322254 0.71186792690898 1 0.84735540651971 13.2517247205180 -0.0354727540870399 0.0921034259527202
AT3G23000_at 9.02330957264919 9.47629235485994 9.45724110519448 9.7620241390806 9.73079769946623 9.44684228051497 10.1970024726020 10.2594216584206 10.3853667773000 10.8776458507496 10.9120492695078 10.9182150976500 10.9538180051687 10.9777355695946 10.2180239849089 11.1326802172289 10.8925110852568 10.5964700793429 11.0224353721062 0.114372083865212 0.114005941154638 0.119781145095391 0.114871865636546 0.108352321200366 0.114847394554360 0.109727260327043 0.112380416226003 0.125925825748202 0.117150329486331 0.114302635710505 0.113010788259659 0.109907710381709 0.116411304430341 0.124649486746207 0.112557356615329 0.118679016162351 0.116197085634368 0.115224251650053 3 3 + 8173433 8173915 8173653.636 8172604 8174138 + gene protein_coding_gene FALSE TRUE AT3G23000.1 CIPK7 (CBL-INTERACTING PROTEIN KINASE 7); kinase Encodes a serine/threonine protein kinase with similarities to CBL-interacting protein kinases, SNF1 and SOS2. similar to CIPK4 (CBL-INTERACTING PROTEIN KINASE 4), kinase [Arabidopsis thaliana] (TAIR:AT4G14580.1); similar to CBL-interacting protein kinase 5 [Populus trichocarpa] (GB:ABJ91213.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain NAF; (InterPro:IPR004041); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0382041475192232 -0.381371465453816 0.712394800700622 1 0.84706524903277 20.4626183671656 -0.0382041475192232 0.107044197629198
AT3G02260_at 9.34775922232733 9.45147367297471 9.56208091352777 9.448592004198 9.73650352457167 9.27647047515421 9.53195563367383 9.0356438997826 9.82603262958594 9.7742345435146 9.56015339786604 9.66440154757506 9.40544971915984 9.34146194534395 9.493434753405 9.60405714301369 9.37013475024671 9.65358321708846 9.67112338255347 0.115390144620856 0.110333321488347 0.115501538592622 0.112594421245584 0.110333321488347 0.112206275149754 0.111367276287727 0.114588270472801 0.113363732783888 0.110771459681852 0.116125296976823 0.110333321488347 0.112736320408019 0.117857077515060 0.121284884163135 0.113460189365923 0.124629433225617 0.114154483754600 0.112959179374964 3 3 - 431223 431715 431507.455 430991 448496 - gene protein_coding_gene FALSE TRUE AT3G02260.1 BIG (DARK OVER-EXPRESSION OF CAB 1); binding / ubiquitin-protein ligase/ zinc ion binding Calossin-like protein required for polar auxin transport similar to TAZ zinc finger family protein / zinc finger (ZZ type) family protein [Arabidopsis thaliana] (TAIR:AT1G16710.1); similar to hypothetical protein [Cleome spinosa] (GB:ABD96935.1); similar to Putative zinc finger in N-recognin, putative [Medicago truncatula] (GB:ABD33330.1); similar to p600 [Homo sapiens] (GB:AAL83880.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Quinoprotein amine dehydrogenase, beta chain-like; (InterPro:IPR011044); contains InterPro domain Flavocytochrome C3, N-terminal cytochrome; (InterPro:IPR012286); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Zinc finger, N-recognin; (InterPro:IPR003126) -0.0406710019161833 -0.380138890107008 0.713275704915743 1 0.846581528031678 19.0581672904914 -0.0406710019161833 0.120094471071177
AT4G26710_at 10.4474812943769 10.8335361052944 10.7006841529787 10.9049718697271 10.8694315979154 10.6085670382023 10.7211303933270 11.1300561522290 11.2881169477875 10.9686384675686 11.3862874905253 11.2107055195880 11.2253276956072 11.2689904968813 11.1111475718636 11.1217638272607 10.8241245250485 11.1021932235409 10.9408857714494 0.0746381183823902 0.0702781793623344 0.0809266382733337 0.0720633089278408 0.0726391600702073 0.0833667488509111 0.0695864213612452 0.0725392281943164 0.0728694801884185 0.0692826190998729 0.0688570017776832 0.0684747607242608 0.069772170194222 0.0743352684351614 0.0684342354365221 0.0685006808314462 0.0821126607066654 0.0718680133788022 0.0690342669525873 4 4|0 +|/ 13468712 13469641 13469044.5 13468555 13469941 + gene protein_coding_gene FALSE TRUE AT4G26710.1|AT4G26710.2 ATP synthase subunit H family protein similar to ATP synthase subunit H family protein [Arabidopsis thaliana] (TAIR:AT5G55290.1); similar to vacuolar ATPase subunit e-like [Mesembryanthemum crystallinum] (GB:CAD27522.1); contains InterPro domain ATPase, V0 complex, subunit H; (InterPro:IPR008389) 0.0391499132933375 0.379282595179007 0.713887954267774 1 0.846246365985583 21.888081295202 0.0391499132933375 0.112956105564022
AT2G35610_at 6.30980202460764 6.51031030700069 5.74367591794589 5.73601043712731 6.31118102835803 5.74870435092712 5.71072599459275 5.59231730025313 6.04469357343821 5.82574764595025 6.20587162649847 6.64582557466677 5.76104589053967 5.91898445448852 5.94052108516825 5.56716169783942 5.5204898094483 6.07688187628723 5.78136852715014 0.23454257321668 0.232617963070410 0.250175105015100 0.234811329898192 0.230983247905174 0.261830366011569 0.233826352229278 0.233943268197010 0.254632060521672 0.240687228586132 0.230485330638583 0.240985939180062 0.234895931012333 0.235410453464965 0.232724722372157 0.239639925838482 0.263266694013969 0.245502006909369 0.23841110550066 2 2 - 14954698 14955573 14955139.364 14954444 14958326 - gene protein_coding_gene FALSE TRUE AT2G35610.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G70630.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF97349.1); contains InterPro domain Reticulon; (InterPro:IPR003388) -0.0376174016682101 -0.378744278951577 0.71427296145607 1 0.84603603693928 11.8771080871249 -0.0376174016682101 0.105359306712658
AT1G76890_at 6.90331289131464 7.22588916055216 7.01550753896523 7.12705886125322 7.76484781684276 7.55202313433622 7.44277036997365 6.90147779213895 7.69395924430243 7.62475175306925 7.79349099776079 7.49806000611968 6.92259247366083 7.70567122938303 7.27689451651413 7.46682161453825 6.92326941136749 7.14172382780248 7.6826031372716 0.146036594667849 0.142137898645498 0.153019708019654 0.147099575339273 0.152555170681994 0.149461675503530 0.143824618226524 0.148086356211098 0.159297004710426 0.147114701421383 0.147844602168156 0.148815087935445 0.144397846236099 0.143978608699655 0.152754439566594 0.146733304628680 0.159569861403966 0.146586408126969 0.162143584193628 1 1 - 28878125 28878655 28878403.364 28877953 28880186 - gene protein_coding_gene FALSE TRUE AT1G76890.1|AT1G76890.2 GT2 (GT2); transcription factor encodes a plant trihelix DNA-binding protein similar to trihelix DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G76880.1); similar to OSJNBa0011L07.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE02791.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17016.1); similar to Os04g0541100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053444.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to trihelix DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G76880.1); similar to OSJNBa0011L07.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE02791.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17016.1); similar to Os03g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048736.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0397712087749602 -0.378095228057298 0.714737281630224 1 0.845782825090023 14.7456960562676 -0.0397712087749602 0.116704958675927
AT2G25350_at 4.94982458944046 5.14814266384078 5.36944099000955 5.04761889280929 5.60266831243727 5.34578081206397 4.75273063196977 4.84551470273025 5.10879504588179 5.19351119229467 4.67109278959643 4.64476993848144 4.87854404727 5.16716782137785 4.21072655507331 4.94927009003925 4.59333592087644 4.93488407679254 5.02002066630969 0.227927554314171 0.228343528324468 0.238661714902599 0.229600019558053 0.228562479856729 0.239304192052236 0.232672852682076 0.224203208094692 0.230317883046229 0.231708401212474 0.225855603550462 0.224203208094692 0.226786512790306 0.226480727120621 0.231413534992963 0.224675822930654 0.232479649078822 0.230386672713551 0.224203208094692 2 2|0 +|/ 10806864 10807770 10807309.444 10804678 10807835 + gene protein_coding_gene FALSE TRUE AT2G25350.1 phox (PX) domain-containing protein similar to phox (PX) domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G32160.1); similar to Phox-like [Medicago truncatula] (GB:ABE81779.1); contains InterPro domain Phox-like; (InterPro:IPR001683) 0.0330528541388624 0.37715521943025 0.715409970375264 1 0.845416845582513 10.0645483026296 0.0330528541388624 0.0807072467110467
AT4G38490_at 8.46025015724539 8.46143577338861 8.47264850621722 8.4165550868649 8.54992222390792 8.67202826420087 8.14964116068033 8.24997039239596 8.17006114288525 8.17150713316306 8.06061629248876 8.16343941928789 8.06052524393317 7.89315416967954 8.33211794697023 8.22740772391171 7.9198813878474 7.84192921028715 8.27852562601879 0.142890050515859 0.146022816398009 0.142764874780302 0.145276700029527 0.142044324137277 0.147069051465417 0.147238094644220 0.145279660884392 0.156619378530378 0.150110677118828 0.144619627778785 0.141326065231315 0.149416929368184 0.161989537114345 0.148833438837089 0.138676117880489 0.155900885546474 0.145592036386035 0.145989633185536 4 0|4 /|+ 18006524 18007141 18006901 18006282 18007366 + gene protein_coding_gene FALSE TRUE AT4G38490.1 similar to Os09g0450200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063325.1) 0.0265750531575941 0.376605440103164 0.715803525012377 1 0.845203203798894 16.5635973914409 0.0265750531575941 0.0290214875368446
AT1G79870_at 9.426612572611 9.44961250520114 9.3091527118924 9.32468866551719 9.6141814185961 9.2948934814522 9.80257353822732 9.57263343462545 9.25920272707147 9.41678558703993 9.45740795571352 9.51875283497485 9.36277322477103 9.5309446773067 9.55107924366236 9.49746290105006 9.39764631909873 9.58422754936423 9.06901357628328 0.118937393072388 0.115340645970054 0.120697264819636 0.120386178524504 0.118770436781193 0.119664233023452 0.116914974401517 0.118716007710860 0.128596109652002 0.114449835345831 0.119879637472207 0.115820128112361 0.110646494393905 0.11439410943157 0.115326614937049 0.114541448026765 0.123577038342458 0.113478875959250 0.117123089303442 1 1 + 30050029 30050712 30050418.909 30049639 30050920 + gene protein_coding_gene FALSE TRUE AT1G79870.1 oxidoreductase family protein similar to oxidoreductase family protein [Arabidopsis thaliana] (TAIR:AT1G12550.1); similar to hydroxyphenylpyruvate reductase (HPPR) [Solenostemon scutellarioides] (GB:CAD47810.2); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; (InterPro:IPR006139); contains InterPro domain D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; (InterPro:IPR006140) 0.0310369657380181 0.376453483027254 0.715912317956638 1 0.845144206992669 18.8422289418691 0.0310369657380181 0.0682607098062413
AT1G75690_at 10.9376645245847 10.9595099060247 10.5955721918362 10.6267972698706 11.0848783340765 10.8796809863700 11.6215278426077 11.6339861761178 11.8839923238139 11.8480193292392 12.6606367492332 12.7089834722939 12.280485565123 12.5332569747539 12.4579620365292 12.4168027245753 11.9050328857745 12.3427930701241 11.8705102443862 0.0924570607237661 0.0920869751628707 0.0925892038657679 0.0923642190899453 0.0891397542481504 0.0920797720294334 0.0899970796762184 0.0893597791542504 0.0964907752338039 0.0898413022229636 0.0933921950490484 0.0909236610931175 0.086867861024774 0.0893264144068563 0.0926250427228836 0.0897042028666199 0.0902667020709353 0.0933358948183508 0.0901278970408298 1 1|0 -|/ 28426061 28426731 28426387.444 28425771 28426946 - gene protein_coding_gene FALSE TRUE AT1G75690.1 chaperone protein dnaJ-related similar to Os03g0244000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049532.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) 0.0271484844295298 0.376419462433075 0.715936675777322 1 0.845131001762195 23.1828278959097 0.0271484844295298 0.0361818309942816
AT1G17980_at 6.91478646516227 7.04921997164944 6.45929411407169 6.63832434275393 7.04792161618415 6.92222739431453 6.87332382172179 6.75993837301901 5.92522504507292 5.99541825979791 6.13061350730949 5.64358952482434 6.25109583331196 5.96717012599255 6.20900548183978 6.55560246834939 5.93695043654022 6.47050293884806 5.94864343442232 0.215665954985126 0.218191007844673 0.236089480403810 0.236137804980572 0.217758677672680 0.236678017048496 0.217910296784107 0.22583417871742 0.239333659649591 0.220811515741023 0.217477490769415 0.215665954985126 0.224254487796010 0.232896151111754 0.231813775427766 0.225558763438843 0.230267815259804 0.230667407415817 0.230195461569060 1 1 - 6187745 6188493 6188165.727 6187500 6191701 - gene protein_coding_gene FALSE TRUE AT1G17980.1|AT1G17980.2 nucleotidyltransferase family protein similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to putative poly(A) polymerase [Oryza sativa (japonica cultivar-group)] (GB:BAD54151.1); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68016.1); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68015.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010)|similar to nPAP (NUCLEAR POLY(A) POLYMERASE), nucleotidyltransferase [Arabidopsis thaliana] (TAIR:AT4G32850.8); similar to putative polynucleotide adenylyltransferase [Oryza sativa (indica cultivar-group)] (GB:AAW68016.1); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain Poly(A) polymerase, C-terminal-like; (InterPro:IPR011068); contains InterPro domain Poly(A) polymerase, central region; (InterPro:IPR007012); contains InterPro domain Poly(A) polymerase, RNA-binding region; (InterPro:IPR007010) 0.0283810427361001 0.375855437703056 0.716340552155695 1 0.844912241075479 12.8841271137219 0.0283810427361001 0.0485724359775889
AT3G16530_at 8.57419674901394 9.17646476487454 8.04066274634426 8.39669564313048 9.20316934670356 8.95807825863083 4.3941384709733 5.90847567607265 9.39786238596549 8.93540604233664 8.10763229056583 9.21566724115064 6.78572810570982 9.33888707784015 6.79619100563708 6.33789160267421 6.32759802726183 7.44995067818193 8.73406097621977 0.266979634464595 0.263378202449994 0.272143053345919 0.269773925695432 0.259450758488735 0.26266401277587 0.292959891083117 0.267610370975463 0.284775391257958 0.261582513259927 0.259065400913935 0.257885899566209 0.273029382409667 0.258596343221658 0.274989269698919 0.261227779963154 0.283960735616914 0.267889571395001 0.263004191962524 3 3 - 5624632 5625089 5624822.7 5624383 5625476 - gene protein_coding_gene FALSE TRUE AT3G16530.1 legume lectin family protein Lectin like protein whose expression is induced upon treatment with chitin oligomers. similar to legume lectin family protein [Arabidopsis thaliana] (TAIR:AT3G15356.1); similar to putative lectin-like protein [Brassica napus var. napus] (GB:AAS68182.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) 0.0794163511278616 0.373864086568321 0.717767234914032 1 0.84414241423479 16.1151784012021 0.0794163511278616 0.291779246808302
AT1G13450_at 7.75019760304023 7.74154344306557 7.63881569606385 7.76147445418393 8.39804382141778 8.09729956650884 7.5724533537574 7.73671503599197 7.93516732229157 7.48987020699418 7.64788952924087 7.51315562875493 7.70145280318602 7.93204406708196 7.1007263574461 7.73214789769887 7.49429123254056 7.60727902914066 7.99012980260596 0.167559463959558 0.164825957459716 0.17585545287005 0.185519139843926 0.174053747606508 0.164956223696755 0.160406493134349 0.177524136462491 0.172178207150942 0.168588465172125 0.169722489421573 0.165399585750432 0.175492128411359 0.162375665688602 0.177814558176290 0.158486503322704 0.192468251118804 0.165845575897196 0.169583552325863 1 1 - 4613007 4613856 4613342.778 4612728 4615350 - gene protein_coding_gene FALSE TRUE AT1G13450.1|AT1G13450.2 DNA binding protein GT-1 similar to DNA-binding protein GT-1-related [Arabidopsis thaliana] (TAIR:AT3G25990.1); similar to GT-1 (GB:AAA66473.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to DNA-binding protein GT-1-related [Arabidopsis thaliana] (TAIR:AT3G25990.1); similar to GT-1 (GB:AAA66473.1); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0298742832094081 0.371439941826161 0.719505566214609 1 0.843210603738678 15.5351574194704 0.0298742832094081 0.0630045123674692
AT4G05320_at 12.2569037918692 12.7762484803770 12.9341853649625 12.8502619861569 13.1357745373987 12.5153279755061 13.0411600931868 12.9669081356270 13.6721268456895 13.4589195503392 13.6591220978872 13.5861485873567 13.6112268789556 13.6640792399722 13.068144510954 13.5052475075210 13.0881962188502 13.5796768234017 13.3110151880680 0.084241809795211 0.0748282368885774 0.0816314794992887 0.0818906296796601 0.075984831524087 0.0868812366027352 0.0766938200508377 0.075272057369776 0.0817848625633367 0.0733105789565865 0.0749256351880696 0.0749574172114473 0.0750766503586725 0.0761645484752947 0.0738662957552536 0.0748763124858076 0.079828338215238 0.0740599755444562 0.0741912202261166 4 4 + 2719909 2719927 2719918.545 2718168 2720305 + gene protein_coding_gene FALSE TRUE AT4G05320.1|AT4G05320.2|AT4G05320.3|AT4G05320.4|AT4G05320.5|AT4G05320.6 UBQ10 (POLYUBIQUITIN 10); protein binding|UBQ10 (POLYUBIQUITIN 10) One of five polyubiquitin genes in A. thaliana. These genes encode the highly conserved 76-amino acid protein ubiquitin that is covalently attached to substrate proteins targeting most for degradation. Polyubiquitin genes are characterized by the presence of tandem repeats of the 228 bp that encode a ubiquitin monomer. Induced by salicylic acid. Independent of NPR1 for their induction by salicylic acid. Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to hexaubiquitin protein [Helianthus annuus] (GB:CAA40324.1); similar to polyubiquitin OUB2 [Olea europaea] (GB:AAL27564.1); similar to pentameric polyubiquitin [Nicotiana tabacum] (GB:CAA54603.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626)|Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to hexaubiquitin protein [Helianthus annuus] (GB:CAA40324.1); similar to polyubiquitin OUB2 [Olea europaea] (GB:AAL27564.1); similar to ubiquitin [Pisum sativum] (GB:AAD03343.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626)|Identical to Ubiquitin (UBQ16) [Arabidopsis Thaliana] (GB:P59263;GB:O80715;GB:Q38875;GB:Q9LDJ2;GB:Q9LYW1;GB:Q9M1P9;GB:Q9S7X3); similar to UBQ3 (POLYUBIQUITIN 3), protein binding [Arabidopsis thaliana] (TAIR:AT5G03240.3); similar to UBQ4 (ubiquitin 4), protein binding [Arabidopsis thaliana] (TAIR:AT5G20620.1); similar to UBQ14 (ubiquitin 14), protein binding [Arabidopsis thaliana] (TAIR:AT4G02890.3); similar to pentameric polyubiquitin [Nicotiana tabacum] (GB:CAA54603.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626) 0.0440626895772103 0.371148254216168 0.719714849036913 1 0.843098877209334 26.2850550095411 0.0440626895772103 0.141358156196234
AT3G52060_at 9.18462987675992 9.69751717585721 8.97247256189153 9.57350102218563 9.73045513913539 9.80352965260777 8.81032023880631 9.29798270663978 8.67605057654443 9.02089550997006 8.25416138573423 8.66737087392439 9.43156987616218 8.83210991274603 7.4730026632161 9.61136825743355 9.18651001285363 8.7436024342955 9.1562735233909 0.175973938272624 0.170254249096845 0.177940038098201 0.173984181859029 0.172653238246559 0.171818334944990 0.182185491825978 0.170254249096845 0.189224260274247 0.172870922040632 0.174034369431729 0.173451276262203 0.174340225784951 0.179602127517957 0.188585239921313 0.172371736218134 0.171272751365039 0.177479072655559 0.171447436627955 3 3 - 19322002 19322528 19322273.545 19321510 19323264 - gene protein_coding_gene FALSE TRUE AT3G52060.1|AT3G52060.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22070.1); similar to Protein of unknown function DUF266, plant [Medicago truncatula] (GB:ABE91847.1); similar to Os03g0648100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050776.1); similar to Protein of unknown function DUF266, plant [Medicago truncatula] (GB:ABE78946.1); contains InterPro domain Protein of unknown function DUF266, plant; (InterPro:IPR004949) 0.0481329090915876 0.369707689044359 0.720748805076053 1 0.842548333658633 18.2468186119092 0.0481329090915876 0.161177279509740
AT3G57610_at 9.836547072062 9.93688662826753 9.84939538642483 9.80078106008623 9.70795395230697 9.60582242197275 10.2196977186727 10.1874150548973 9.88852556453852 9.98592699527418 10.1234877540715 10.2683532450634 10.1590502021205 9.9867047050429 10.3126239504053 10.2794077083344 10.1226830134170 10.2264945653255 9.92288450771023 0.0749347040690082 0.0735442448760717 0.0786452531387878 0.0758407395742836 0.0731510941257539 0.0781349668146914 0.0741526978816744 0.0727092371229036 0.0788574719275821 0.0735134396551809 0.0736810254191143 0.0727092371229036 0.0734248248758629 0.0764861655336411 0.0771977009679098 0.0727556126079954 0.079757221448029 0.0773294879428853 0.0727092371229036 3 3 - 21345517 21346423 21345885.364 21345261 21347650 - gene protein_coding_gene FALSE TRUE AT3G57610.1 adenylosuccinate synthetase (ADSS) encoding adenylosuccinate synthetase (AdSS), the enzyme involved in the first step of the formation of the purine nucleotide AMP (conversion of IMP to adenylo-succinate) Identical to Adenylosuccinate synthetase, chloroplast precursor (EC 6.3.4.4) (IMP-- aspartate ligase) (AdSS) (AMPSase) [Arabidopsis Thaliana] (GB:Q96529); similar to BAC19.7 [Lycopersicon esculentum] (GB:AAG01122.1); similar to adenylosuccinate synthase [Nicotiana tabacum] (GB:AAR06294.1); similar to Adenylosuccinate synthetase [Medicago truncatula] (GB:ABE93770.1); contains InterPro domain Adenylosuccinate synthetase; (InterPro:IPR001114) -0.0258717297394697 -0.368874099999876 0.721347385211892 1 0.842230703960959 19.9517105779097 -0.0258717297394697 0.0267560638589347
AT4G31880_at 6.67023117948158 6.59696247845708 6.34198552034862 6.69539247851036 6.40860379853529 6.73263444275588 6.27128016765931 6.65973911283612 6.70427701188521 6.77342376602057 6.99820466840141 6.81699626961483 6.87749972302662 6.72066526421188 6.6746792963647 6.9046618214406 6.83779992848702 6.56894993172005 7.12834850023418 0.189902443927835 0.188735423233648 0.184420535286067 0.187641880590583 0.188791233883485 0.189341516047063 0.198754148292236 0.200903232144432 0.184420535286067 0.190882392720582 0.191170452568406 0.189703271453015 0.186121754307740 0.192922254241649 0.189078967950369 0.186343434750686 0.190393707660200 0.193936654829685 0.192286839122833 4 4 - 15419510 15420348 15419783.6 15419410 15424189 - gene protein_coding_gene FALSE TRUE AT4G31880.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15940.1); similar to Tudor [Medicago truncatula] (GB:ABE86625.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) -0.036825077187959 -0.366681601336445 0.722922732313439 1 0.841398584503353 13.3814112501339 -0.036825077187959 0.10753937502908
AT2G43500_at 6.52578638390099 6.73212836970793 8.0335274388685 7.64142441893042 7.8020015817021 7.44226379396278 7.57418165884492 7.40575464092994 5.87296422567115 6.17326163594273 4.90423503464255 4.7309590516601 6.08329412865132 5.78076827336963 4.10720690034544 5.9402739897161 6.81111563999885 5.39696644121947 6.15730698692573 0.225467444856882 0.216428837224719 0.221618876099971 0.228420703393636 0.218486186839206 0.22598076719449 0.225082011903817 0.225091412657266 0.23701208954214 0.228440814656511 0.222937254519171 0.223502554615653 0.220681735544939 0.221086685984543 0.224255442126087 0.216657205277266 0.223232842832333 0.228790340491962 0.221124384963960 2 2 + 18072935 18073473 18073191.182 18069792 18073716 + gene protein_coding_gene FALSE TRUE AT2G43500.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G59580.2); similar to Octicosapeptide/Phox/Bem1p; Plant regulator RWP-RK [Medicago truncatula] (GB:ABE91474.1); similar to NIN-like protein 2 [Lotus japonicus] (GB:CAE30325.1); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.0359248473119489 0.366112982102044 0.723331522959514 1 0.841183559254333 13.1632318935044 0.0359248473119489 0.102978537292697
AT2G13360_at 12.7477440174011 12.8477714801805 13.1012132933184 13.0223772170398 13.0666377254417 13.0517394375841 13.2235000973043 13.3638078379577 13.1444487554997 13.4016256286309 13.3069113760454 13.0964288590402 13.3571230340585 13.1336976272384 13.0113588750914 13.3571492516596 13.2095590587521 13.2746222115414 13.3099678322029 0.0787103799061094 0.0758832679048856 0.0759695154635298 0.0782089575958694 0.0782438987193524 0.0834592078345629 0.0781716170117265 0.0756688863218697 0.0862531102782984 0.0787644190773196 0.0806623975943632 0.0763860634161645 0.0805028313913547 0.0886684446063266 0.080359410656947 0.0767064480539962 0.0834063693277544 0.080325864322776 0.0791160842676454 2 2|0 -|/ 5546544 5547258 5547053.444 5546322 5548438 - gene protein_coding_gene FALSE TRUE AT2G13360.1|AT2G13360.2 AGT (ALANINE:GLYOXYLATE AMINOTRANSFERASE) Encodes a peroxisomal photorespiratory enzyme that catalyzes transamination reactions with multiple substrates. It is involved in photorespiration. Identical to Serine--glyoxylate aminotransferase (EC 2.6.1.45) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) (AGT1) [Arabidopsis Thaliana] (GB:Q56YA5;GB:O81248); similar to aminotransferase 1 [Cucumis melo] (GB:AAL47679.1); similar to aminotransferase 2 [Cucumis melo] (GB:AAQ56195.1); similar to aminotransferase 1 [Cucumis melo] (GB:AAQ56192.1); contains InterPro domain Aminotransferase, class V; (InterPro:IPR000192) -0.0261025293155237 -0.365739918049773 0.723599776388373 1 0.84104265908332 26.3049507343399 -0.0261025293155237 0.0328935180325791
AT1G32940_at 7.36191393698405 7.40276997415484 7.71654771372234 7.95487320699301 6.08681906831919 5.15298973853913 5.3991333535308 4.47633399519177 4.61819736801384 4.83921585492174 4.08378252334947 4.22833819207034 4.1404185924184 4.40738708668023 3.91212613095711 4.38249669961627 4.41975614636208 3.87007048225053 4.40809628309554 0.226097988275677 0.223719912239022 0.224950254522686 0.221044787600838 0.226783818592884 0.230578739955042 0.218112301477492 0.220745163270427 0.223300251728354 0.221015368474294 0.218081494704663 0.218397125991565 0.223522930493845 0.217740116644043 0.219288558727295 0.217965114459649 0.218383290060356 0.227114303825106 0.221571975038171 1 1 + 11940393 11940768 11940582.273 11937576 11940958 + gene protein_coding_gene FALSE TRUE AT1G32940.1 subtilase family protein similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32950.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT1G32960.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT4G10540.1); similar to Os09g0530800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063751.1); similar to Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE90461.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Protein of unknown function DUF11; (InterPro:IPR001434); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.0632400483153662 0.365150702125387 0.724023536935653 1 0.840820404759843 10.8451143652911 0.0632400483153662 0.231017549209272
AT2G38270_at 8.1839855410754 8.13692136693875 8.04044599706581 8.07687702842798 7.90167161521659 7.68338787538764 7.79321496037863 8.17913557833169 7.9280838569861 7.84641897872866 7.74166764698073 7.81702486894194 7.80237567968022 8.03984232533133 8.23871733425268 8.06221195308224 7.37029319934543 7.4869155906284 7.43021495567097 0.166686754623219 0.150720552109058 0.146048726433182 0.153258171751978 0.151567046113385 0.153649271308614 0.150347509209657 0.160491900631425 0.15848036997885 0.158020037906573 0.152263696245429 0.146294436223061 0.1534860371015 0.147487009610123 0.147175030300981 0.151055207660257 0.155076995125535 0.152429732752487 0.149940666711179 2 2|0 -|/ 16038427 16039817 16039069.8 16038340 16040154 - gene protein_coding_gene FALSE TRUE AT2G38270.1 CXIP2 (CAX-INTERACTING PROTEIN 2); electron carrier/ protein disulfide oxidoreductase Encodes protein homologous to CXIP1. CXIP1 is a PICOT domain containing protein interacts with CAX1, a high capacity calcium transporter. However, CXP2 does not interact with CAX1 and only moderately activates another calcium transporter CAX4. Identical to Monothiol glutaredoxin-S16, chloroplast precursor (AtGrxS16) (CAXIP1- like protein) (GRXS16) [Arabidopsis Thaliana] (GB:Q8H7F6;GB:O80451;GB:Q8LD13); similar to CXIP1 (CAX INTERACTING PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT3G54900.1); similar to Glutaredoxin; Glutaredoxin-related protein [Medicago truncatula] (GB:ABE79609.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin; (InterPro:IPR002109); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutaredoxin-related protein; (InterPro:IPR004480) -0.031371794169075 -0.363891773158817 0.724929287484625 1 0.840346693300048 15.7768484979740 -0.031371794169075 0.0774165354681618
AT1G21480_at 5.50179736008147 5.38898693982446 5.19584444736796 5.1098700424684 5.87187789974258 5.75183793786862 5.91626217066579 6.00111035522598 5.19703145000895 5.79046427188172 5.93805800245336 6.23410307835362 5.19950947160678 5.80011342141349 6.07675457942474 5.55164857892442 5.74082339985776 5.49758646019623 5.77484053819424 0.219488466183504 0.210433930617722 0.208667245261638 0.210706802221202 0.212956324715255 0.2084156148763 0.215406827384485 0.210946956255804 0.217930894809658 0.210451214538482 0.210975874394489 0.20979557817463 0.214044444903498 0.214375127823696 0.218550739512894 0.209184194958468 0.212546752700793 0.214650499151739 0.216189338008489 1 1|0 -|/ 7519114 7519985 7519460.2 7518935 7521493 - gene protein_coding_gene FALSE TRUE AT1G21480.1|AT1G21480.2 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to Os07g0188700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059081.1); similar to Os02g0187200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046127.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE81272.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263)|similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G22940.1); similar to Os02g0187200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046127.1); similar to Exostosin-like [Medicago truncatula] (GB:ABE81272.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) -0.0261512102935189 -0.363583695988652 0.72515100674444 1 0.840231010552184 11.2633334161842 -0.0261512102935189 0.0353500300194336
AT1G80950_at 7.12363756806154 8.29208294843898 7.8114148559783 7.67503762153975 8.51222863564435 7.60705206440325 8.25266485693063 7.8731164467618 7.04138102057249 7.1551341121223 6.94131185493914 7.2521777300705 6.98730405204564 7.13258617685102 6.69765820144122 6.7942349214648 6.38424125193621 6.93082719725106 6.94724710241195 0.279797678789011 0.28085927453488 0.290579070829379 0.292185801568983 0.289459825776124 0.29669555048515 0.291054061565144 0.282072955434302 0.294953083169038 0.279098256586190 0.282799782019131 0.279098256586190 0.281760754074438 0.294106263285233 0.294870797687794 0.279681413716262 0.308225921817474 0.301667711595394 0.281207062678168 1 1|0 -|/ 30417557 30418864 30418089 30417436 30420005 - gene protein_coding_gene FALSE TRUE AT1G80950.1 phospholipid/glycerol acyltransferase family protein similar to calcineurin B subunit-related [Arabidopsis thaliana] (TAIR:AT2G45670.1); similar to Phospholipid/glycerol acyltransferase [Medicago truncatula] (GB:ABE77854.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.0709101162212269 -0.363496385129189 0.725213848247648 1 0.840198242621392 14.8623860838626 -0.0709101162212269 0.265133355029614
AT2G25520_at 9.17178938385775 9.49459186405303 9.32345244523497 9.4574642855187 9.45648708574663 9.0798215935389 9.08305572721985 9.36784547547112 9.22894707158443 8.85237681841448 9.09944063055865 9.15224667962079 8.90475351535146 8.81438871427468 8.75486534866381 8.57758094249206 8.4766200154498 9.09231038552925 8.85803744561208 0.140729872508408 0.130984630252876 0.135689223573243 0.135864624321812 0.134454203698289 0.138187616090348 0.132683356181657 0.135687031507826 0.155819737020145 0.130984630252876 0.134328757762696 0.13360399024289 0.132338521749845 0.137979793418751 0.138235985604043 0.138756000603206 0.141559315872188 0.137759461539913 0.138522660937755 2 2 + 10868518 10869042 10868757.273 10867906 10869435 + gene protein_coding_gene FALSE TRUE AT2G25520.1 phosphate translocator-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT4G32390.1); similar to Protein of unknown function DUF250 [Medicago truncatula] (GB:ABE88491.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.0353877965091987 -0.363056598740528 0.725530415443402 1 0.84003330567701 18.2237199280116 -0.0353877965091987 0.101667620537926
AT1G11890_at 9.42370798083879 9.522901413815 9.75780245202112 9.54609141360858 9.46508738292043 8.98526079035454 9.79555336134474 9.4052702316795 8.85157025366888 8.71617926866933 8.99283920279622 9.1105485272399 8.83826029143116 9.10960852166529 9.04591964625779 8.71630125171952 8.89716939375331 8.49040433214338 8.61128248978035 0.111309963680997 0.110651212851635 0.112801184191542 0.116661015971765 0.118992299049144 0.120512223580809 0.114313139772224 0.116171899619957 0.119171961220514 0.114549146165696 0.115356276744639 0.112164305706661 0.113214341750019 0.114411415661212 0.121967110943510 0.116967559042896 0.120983165926733 0.116818560198312 0.116010273865531 1 1|0 +|/ 4011571 4012780 4012260.222 4010778 4013122 + gene protein_coding_gene FALSE TRUE AT1G11890.1 SEC22 (secretion 22); transporter member of SEC22 Gene Family Identical to 25.3 kDa vesicle transport protein (AtSEC22) (SEC22) [Arabidopsis Thaliana] (GB:Q94AU2;GB:O65393); similar to vesicle transport protein-related [Arabidopsis thaliana] (TAIR:AT5G52270.1); similar to unknown [Solanum tuberosum] (GB:ABB29953.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) 0.037744827321482 0.362965971887863 0.725595657419753 1 0.839999341091775 18.3009470782805 0.037744827321482 0.114427661867856
AT2G39260_at 7.44011990116759 7.69449016878008 7.8600125246203 7.61119382922248 8.04660837398009 7.9167418955558 7.66484071101626 7.54010345217953 7.7467986337988 7.73837282774574 7.36765752458343 7.58487890221278 7.34408200458409 7.86007773697852 7.27140396888442 7.6300046925854 7.67309210131769 7.60125325947298 7.78078664665445 0.166604410978832 0.166312608881574 0.173400283557835 0.177287399018302 0.164883764948865 0.168602441829714 0.165631845210977 0.174567172483279 0.187873076531941 0.167319347824768 0.169013295834205 0.165243644705573 0.167368505260944 0.175918054685017 0.173117343026782 0.164913534736529 0.170601746268262 0.171157963482843 0.162851811640120 2 2 - 16399369 16400059 16399657.3 16399125 16406758 - gene protein_coding_gene FALSE TRUE AT2G39260.1 RNA binding similar to Initiation factor eIF-4 gamma, middle; Up-frameshift suppressor 2 [Medicago truncatula] (GB:ABD32424.1); similar to hUPF2 [Homo sapiens] (GB:AAG48509.1); similar to UPF2 regulator of nonsense transcripts homolog [Homo sapiens] (GB:NP_056357.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890); contains InterPro domain Up-frameshift suppressor 2; (InterPro:IPR007193) 0.0299937509932782 0.362489707059283 0.7259385577736 1 0.839820984231129 15.3702016786788 0.0299937509932782 0.0690138141955349
AT3G23570_at 9.90397330848105 10.1636879746715 10.1681544603652 10.4124177367691 10.2597583523963 9.93364201446566 10.7115765614621 10.8037751593990 9.56306890326036 10.3811914730502 9.8235103329747 9.23913223069367 10.1738632187750 10.0542137425912 9.40581576032767 10.3339707360622 10.4911279856882 10.2056895898583 9.54113003490243 0.133006219427957 0.127889367465879 0.132401817750391 0.127111101867974 0.128833788814190 0.138013758537079 0.132240994467402 0.136177186382516 0.140973471694136 0.124317120605472 0.123703168107952 0.125951179183078 0.130824043461024 0.131103914129461 0.134814327336458 0.126572291707075 0.138128756475115 0.131900866838662 0.135364960139751 3 0|3 /|- 8458076 8459132 8458651.75 8457785 8459698 - gene protein_coding_gene FALSE TRUE AT3G23570.1 dienelactone hydrolase family protein similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT3G23600.1); similar to 'putative endo-1,3;1,4-beta-D-glucanase' [Oryza sativa (japonica cultivar-group)] (GB:AAU10802.1); similar to Os05g0399100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055474.1); contains InterPro domain Dienelactone hydrolase; (InterPro:IPR002925) -0.0324040653936504 -0.361627422897090 0.726559549599523 1 0.839498642971736 20.1918126560141 -0.0324040653936504 0.0851261332622977
AT1G19870_at 6.64701668049243 6.6950675575579 6.53121067810895 6.32500597086557 6.9953490741618 7.0754535693817 6.41950931953458 6.10482463214283 6.70335858080661 6.46823589915881 6.7693670800783 6.68311013467504 6.7349533200911 6.4085182867714 6.45202758167205 6.29800006461848 6.46090152360386 6.29560040910405 6.98451589884792 0.170871802406674 0.166701514054012 0.170642397665888 0.164348641816765 0.179705312941262 0.175459487044607 0.171076652427657 0.170015136755169 0.171726832153900 0.169546462187723 0.167018419777455 0.169168237205891 0.170089637513605 0.169236972259737 0.174991138462871 0.171144971239575 0.166929094996042 0.164741058577206 0.166822384445967 1 1 - 6895523 6896043 6895805.364 6895006 6898716 - gene protein_coding_gene FALSE TRUE AT1G19870.1 IQD32 (IQ-domain 32); calmodulin binding similar to IQD31 (IQ-domain 31), calmodulin binding [Arabidopsis thaliana] (TAIR:AT1G74690.1); similar to OSIGBa0099L20.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66887.1); similar to Os04g0663100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054161.1); similar to IQ calmodulin-binding re (GB:ABE77483.1); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) 0.0296283080849542 0.361388407768299 0.726731719096289 1 0.839409425186793 13.2149363151213 0.0296283080849542 0.0670846244018695
AT4G34190_at 11.1232022779928 11.2784673133357 11.0147796106572 11.1109347646715 11.2646041219105 11.054878928682 11.8433784710025 11.6691239914110 11.4452758705328 11.3360647003843 11.7893389060056 11.9736511750488 11.5743486088522 11.7803500346480 12.0129001647838 11.8151496798344 11.4850120233827 11.6272734698336 11.2191553843015 0.100817054358014 0.0913189957733427 0.102165889312560 0.0975354353926313 0.0927507474750937 0.101524950825880 0.0935041366575888 0.0930051419989769 0.103252182767822 0.0930791342446964 0.0936559773883605 0.0937835337551417 0.0913189957733427 0.0952377048519381 0.0943417879313918 0.0913189957733427 0.105426473965496 0.09840417487917 0.0939601749614754 4 4|0 -|/ 16372615 16373491 16373037.3 16372394 16373630 - gene protein_coding_gene FALSE TRUE AT4G34190.1 SEP1 (STRESS ENHANCED PROTEIN 1) Encodes a stress enhanced protein that localizes to the thylakoid membrane and whose mRNA is upregulated in response to high light intensity. It may be involved in chlorophyll binding. similar to differentially expressed osmotic protein ODE1 [Capsicum annuum] (GB:AAD48034.1) 0.0282553495519575 0.361348117884588 0.726760742676863 1 0.839394391699987 22.8402970147270 0.0282553495519575 0.0567931356695162
AT4G32605_at 6.03380874465441 6.05721501046875 5.77699207332395 5.95291521633299 5.67284277825957 5.77627084987766 5.8262899609513 6.10375844181698 4.74508691014675 5.54498606150423 4.98985536985586 5.36089217899413 5.36540957582334 5.28953287925144 5.41319767182409 5.37842526004836 5.29895916993837 5.52007590535137 5.23117846428144 0.245045530421325 0.234468050542878 0.244665654992328 0.257218657215796 0.234342307311495 0.250905720922778 0.239986165406323 0.235809745034234 0.243942839412291 0.232748186320903 0.239254514741862 0.231503670410007 0.232783733230222 0.231848890633198 0.24271729743214 0.231503670410007 0.25228265819378 0.238518671274793 0.241245058867476 4 4|0 -|/ 15726491 15727760 15727256.8 15726279 15727953 - gene protein_coding_gene FALSE TRUE AT4G32605.1 transcription factor similar to mitochondrial glycoprotein family protein / MAM33 family protein [Arabidopsis thaliana] (TAIR:AT3G55605.1); similar to Os06g0326500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057529.1); similar to Os01g0771100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044382.1); similar to hypothetical protein SPBC776.07 [Schizosaccharomyces pombe 972h-] (GB:NP_596322.1); contains InterPro domain Mitochondrial glycoprotein; (InterPro:IPR003428); contains InterPro domain Helix-turn-helix, Fis-type; (InterPro:IPR002197) -0.0286098936412905 -0.361079457422648 0.726954289229513 1 0.839294187063878 11.1504086244757 -0.0286098936412905 0.0597434551871877
AT1G80510_at 6.20995087913786 7.39682962655029 6.14729956420708 6.67138934117416 7.20316990868544 6.35958607571777 6.02004283249911 6.33680158180303 6.06864344773387 5.52291228571084 5.96380816426835 6.02660675323117 5.76377495068155 5.52362572878035 5.35849693028057 5.65879340776197 5.32453054984243 5.57148669141164 5.23444123918334 0.285989718104873 0.269983890330468 0.275264800934696 0.279154793913999 0.273993566663254 0.272306288428725 0.266370764919919 0.263969694317085 0.270020426619757 0.268073549449503 0.263969694317085 0.26795786549071 0.266050594965272 0.266753064341356 0.271973985211459 0.265937663800849 0.266017423730857 0.272869548100305 0.268827055168488 1 1 + 30278926 30279380 30279118.182 30277741 30279685 + gene protein_coding_gene FALSE TRUE AT1G80510.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT5G38820.1); similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT3G30390.2); similar to CTV.3 [Poncirus trifoliata] (GB:AAN62337.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) 0.0723398659690564 0.360946662411585 0.72704996415506 1 0.839244683979616 12.1719117535093 0.0723398659690564 0.273367274337782
AFFX-r2-Bs-phe-M_at 3.26959487298025 3.25214775098338 4.39563489461547 3.40408002084471 5.80987255990057 3.47178171195828 5.85516870708387 3.53829596378711 5.25960351224061 6.16988777309838 5.93352657311789 7.0124513454672 5.40926971976407 5.98410340357545 5.9771194071588 6.63342006283094 5.9508742338036 4.60416343172343 6.35933622157492 0.250293545903711 0.253805724747609 0.252049477731441 0.251720415559635 0.240306404726924 0.247803927179092 0.251985897826271 0.244542370800918 0.257061317736188 0.249542485933873 0.246978537658156 0.240306404726924 0.247935771479176 0.252135740923341 0.266473745377475 0.245148941077570 0.248930148448774 0.249435858084514 0.241359229474409 NA NA NA NA NA FALSE FALSE 0.150023663164985 0.360557245935493 0.727330556481308 1 0.839099619595555 10.0584346558449 0.150023663164985 0.594916871608345
AT2G25680_at 4.58710928595576 4.65247975349687 5.23505282073695 5.23243159157038 5.18441071224972 4.7282531692642 5.97972451234146 5.52118008338792 4.74610513976567 5.75306805298806 4.88774022728956 4.42014553682539 5.05371634080031 4.74716471703899 4.48560398053635 5.8030072750368 6.20054911192104 5.3852452198374 4.82145250958706 0.187965368854538 0.192157278379744 0.184375338804309 0.184751910143080 0.189303075974539 0.195729977273407 0.186853357810369 0.197686224273589 0.197745557021815 0.188912984194012 0.186323732200585 0.183888828913059 0.189603385886405 0.188799274365789 0.196618757227279 0.188217004183955 0.198167953826275 0.195526648227886 0.184334978489423 2 2 - 10940245 10940743 10940496.545 10940139 10941629 - gene protein_coding_gene FALSE TRUE AT2G25680.1 sulfate transporter similar to sulfate transporter [Arabidopsis thaliana] (TAIR:AT1G80310.1); similar to putative sulfate transporter-like [Oryza sativa (japonica cultivar-group)] (GB:BAD03554.1); contains InterPro domain Sulphate transporter; (InterPro:IPR011547) -0.0370325091465307 -0.35959321673822 0.728025370179834 1 0.838741153891766 10.2549661337626 -0.0370325091465307 0.112501886112450
AT4G24900_at 5.25688473415857 4.57228506439489 5.13996414609037 4.9363039633031 6.03885820271957 4.6796277950367 5.89897180698295 4.65630134600791 4.33040303299599 3.94993580055843 4.63571008759401 4.76501719791111 4.48688956587363 4.49598994100085 4.37893265925139 4.77403663247026 4.26837781454369 4.06949207963535 4.95202365546231 0.229512983687076 0.238240522799419 0.228289993960218 0.237359826471889 0.232046534536832 0.244508842629278 0.235849375051215 0.229039766717609 0.235917949471335 0.230617640388159 0.239333692260884 0.228448434044310 0.228289993960218 0.237021170470276 0.235576442885791 0.231122382260979 0.244649060436328 0.233936000232816 0.239928926649791 4 4|0 +|/ 12816025 12816999 12816684.9 12814848 12817609 + gene protein_coding_gene FALSE TRUE AT4G24900.1 similar to hypothetical protein SDM1_56t00018 [Solanum demissum] (GB:AAU90341.2) 0.0880480199237386 0.358774239472340 0.728615847864541 1 0.838437354159843 9.59494625414873 0.0880480199237386 0.341838437132649
AT3G54690_at 7.83658609835739 8.3249769431919 7.43253059837339 7.52747668775708 8.81260196503013 8.46727937721502 8.62381634825605 8.7623944197924 8.98961476142997 8.55042047846694 9.91613992778275 9.50614683511563 9.5012479871574 9.2267318005377 9.5137561230785 9.15835106068299 8.09584895968786 9.12474771667348 9.02954945224662 0.184762806213965 0.171009585721348 0.182556833094839 0.186694122862158 0.177455512527238 0.184855686791040 0.171009585721348 0.171523232541437 0.184320934282649 0.179407561337727 0.173543546967982 0.175778687016589 0.171330990038484 0.190261995794437 0.171009585721348 0.171009585721348 0.213256811741444 0.190467230827779 0.17196064445229 3 3 + 20258021 20258760 20258280.364 20257517 20259003 + gene protein_coding_gene FALSE TRUE AT3G54690.1 sugar isomerase (SIS) domain-containing protein / CBS domain-containing protein similar to Os02g0158300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045955.1); similar to putative Gut Q protein [Candidatus Protochlamydia amoebophila UWE25] (GB:YP_008781.1); contains InterPro domain KpsF/GutQ; (InterPro:IPR004800); contains InterPro domain CBS; (InterPro:IPR000644); contains InterPro domain Sugar isomerase (SIS); (InterPro:IPR001347) 0.0359358876597493 0.35787037112224 0.729267753516171 1 0.838102842419818 17.2794075707737 0.0359358876597493 0.107515834721554
AT3G17920_at 5.63349984110891 5.63605840032226 5.86935420823247 5.9590151377363 5.6459012140818 6.15190224801518 5.79599116855298 5.91590762156144 6.06224291000161 5.51208821447893 5.86870380358692 5.74157772072074 5.93563281932505 6.1926441602689 5.80354244291644 5.49423419966807 5.28192629081119 5.36288353411949 5.84162412317914 0.180336897669668 0.186934680968475 0.194950915433184 0.186104089994553 0.179453003050080 0.196271235121908 0.183213935470166 0.190746160437322 0.189896728433459 0.180806239632646 0.177061199853694 0.188699120402417 0.179152196723964 0.184378323762040 0.192321394841967 0.178176536340999 0.181319508495514 0.199655277352251 0.186956208555629 3 0|3 /|+ 6141609 6141991 6141835 6137261 6142029 + gene protein_coding_gene FALSE TRUE AT3G17920.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT1G48540.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAN05327.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) 0.0330018248352866 0.356911929879167 0.729959273240273 1 0.837749026226003 11.5836844986082 0.0330018248352866 0.0913201820762971
AT3G16110_at 5.9711314598744 6.33735450010347 6.41687028681227 6.11334509326189 5.98779746285293 5.55915850518074 6.34162088122555 6.1944717583314 4.54756624003008 5.21421611771384 5.28633625399526 5.40607192735447 5.08239115735126 4.90192164466193 5.28314068124504 5.06071573733932 5.31773846364514 4.88460792577138 4.8999681323666 0.247981269834649 0.231691020505508 0.230753518568526 0.233157231720874 0.235271120107067 0.243232433653062 0.230753518568526 0.237832894662735 0.254165403716792 0.230753518568526 0.244169226521119 0.230753518568526 0.234586511728271 0.243243105055643 0.239774064667197 0.230753518568526 0.257128255607248 0.237112665042303 0.230753518568526 3 3|0 -|/ 5461172 5462016 5461747.75 5460799 5463766 - gene protein_coding_gene FALSE TRUE AT3G16110.1 ATPDIL1-6 (PDI-LIKE 1-6); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL1-5 (PDI-LIKE 1-5), thiol-disulfide exchange intermediate [Arabidopsis thaliana] (TAIR:AT1G52260.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09971.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Endoplasmic reticulum targeting sequence; (InterPro:IPR000886); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) 0.0368817488467763 0.355979656382463 0.730632163049711 1 0.837405751535105 11.1352765621007 0.0368817488467763 0.113694553854471
AT3G18270_at 6.26041882847612 5.97201455711223 6.12121843208013 5.87185912390815 6.48501095206765 5.74162302784514 5.96145334815 5.49508154029982 5.15936338837288 5.19176417450212 5.1221705359031 5.00056684071871 4.54099589866115 5.1971376449816 4.88443526905525 5.33570771702683 5.42147228556203 5.09558694622398 5.55413415146792 0.229679508718835 0.227333076692844 0.226930804558147 0.233593225761560 0.224192512819579 0.236263987949341 0.222573486121097 0.220710011158790 0.239259643416893 0.230980827304431 0.225575321420298 0.225095693248490 0.233845268804658 0.22435361106972 0.231124055682937 0.225442800238901 0.253068002038179 0.235446922711206 0.223464508111391 3 3|0 +|/ 6263107 6263812 6263465.9 6261911 6264315 + gene protein_coding_gene FALSE TRUE AT3G18270.1 CYP77A5P (cytochrome P450, family 77, subfamily A, polypeptide 5 pseudogene); catalytic a cytochrome P450 pseudogene. the second half of the gene overlaps perfectly with the other gene model. similar to 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding [Arabidopsis thaliana] (TAIR:AT1G68890.1); similar to cis,cis-muconate cycloisomerase -like [Oryza sativa (japonica cultivar-group)] (GB:BAD61475.1); similar to Os01g0138900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041974.1); contains InterPro domain Mandelate racemase/muconate lactonizing enzyme, C-terminal; (InterPro:IPR013342); contains InterPro domain Mandelate racemase/muconate lactonizing enzyme; (InterPro:IPR001354); contains InterPro domain Mandelate racemase/muconate lactonizing enzyme, N-terminal; (InterPro:IPR013341) -0.0471544735243319 -0.355086406707500 0.731277117511993 1 0.837077661558213 11.1768414997662 -0.0471544735243319 0.165580431185205
AT3G50690_at 8.30333595825128 8.17580561982846 8.02623673437621 8.15985257262629 8.26130126102046 8.1790922242178 7.6450908652541 7.80844913059673 8.11208677309094 7.90325805776385 7.5905198509444 7.79149685376437 7.50079232694444 8.04975253996622 7.83936347566947 7.8858031726154 7.85532281490967 7.83398318577216 8.04362240714341 0.146352229756814 0.149451778348697 0.153607818657638 0.149692946856531 0.155659473043044 0.149530427422400 0.151532111203699 0.145954764147432 0.155247910723891 0.146121308009444 0.149412069847633 0.149351701203708 0.162653071549980 0.145954764147432 0.150783462291940 0.151685928702343 0.155858367148013 0.147675108110163 0.150560304204028 3 3 - 18846308 18847274 18846780.273 18845948 18848078 - gene protein_coding_gene FALSE TRUE AT3G50690.1 leucine-rich repeat family protein Identical to Probable acidic leucine-rich nuclear phosphoprotein 32-related protein (ANP32/acidic nuclear phosphoprotein-like protein) [Arabidopsis Thaliana] (GB:Q9SCQ7); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G47970.1); similar to Leucine-rich-associated [Medicago truncatula] (GB:ABE78861.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611) -0.0264130819242916 -0.354806735348955 0.731479095453107 1 0.836975102579424 15.9764130575577 -0.0264130819242916 0.0449813741090874
AT2G01600_at 8.88608588107993 9.13038690714826 9.10663155984834 9.27290208463935 9.3660839670669 9.26261947201218 8.92056703763761 9.15373860040592 9.1335592437985 8.7438320376881 8.72585511043692 8.62606037005598 8.82920406291761 8.83894734941792 8.48922139608606 8.9103708109129 8.6902676840585 8.96371267826372 8.91375412600139 0.105940138893955 0.105377887834170 0.109123385758771 0.107173154669049 0.106345732101946 0.106026199251021 0.112601397403918 0.10864937107982 0.107056351865896 0.107111657454421 0.104730405946376 0.106182332302811 0.104339371005271 0.105651304973009 0.111966919787405 0.105453441569699 0.109697253917529 0.104377914723322 0.103531175153329 2 2 + 271287 272277 271887 268817 272609 + gene protein_coding_gene FALSE TRUE AT2G01600.1 epsin N-terminal homology (ENTH) domain-containing protein Identical to Putative clathrin assembly protein At2g01600 [Arabidopsis Thaliana] (GB:Q8LBH2;GB:Q8S8K2;GB:Q9ZVE6); similar to epsin N-terminal homology (ENTH) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G14910.1); similar to Os01g0694900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043956.1); similar to Carbamoyl-phosphate synthase L chain, ATP-binding; ANTH [Medicago truncatula] (GB:ABE84582.1); similar to Os05g0549000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056232.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.0290938972982324 0.354070641549152 0.732010806101646 1 0.836705541930029 17.9821703063622 0.0290938972982324 0.0675584569209296
AT1G15690_at 12.2267466327032 12.3584644441929 12.2836702593593 12.2705856115121 12.1378586761757 12.2922570676604 12.5838451724316 12.7341644777566 12.2895610004408 12.2968372410242 12.4581757546886 12.5410230297357 12.6512238918061 12.4928923079348 12.5994385826494 12.4629727085944 12.4312111132266 12.5164608912424 12.1246666510054 0.0581310927260692 0.058797730110485 0.0606527691604404 0.0605101351235194 0.0590491528352934 0.0610025896080331 0.0587102366177655 0.0599991777389387 0.066090786886148 0.0598181469724942 0.0595320089903895 0.0577755983627094 0.0586978696411471 0.0604275743120168 0.058590025230207 0.0577755983627094 0.0678972092620384 0.0581258723412309 0.0599342284143925 1 1|0 +|/ 5401444 5402147 5401777.4 5398985 5402728 + gene protein_coding_gene FALSE TRUE AT1G15690.1|AT1G15690.2 AVP1 (vacuolar-type H+-pumping pyrophosphatase 1); ATPase|AVP1 (vacuolar-type H+-pumping pyrophosphatase 1) Encodes a H(+)-translocating (pyrophosphate-energized) inorganic pyrophosphatase (H(+)-PPase; EC 3.6.1.1) located in the vacuolar membrane. Expression is found in all tissues examined, including meristems and floral organ primordium. Expression is particularly enhanced in pollen, and is repressed by light. Over expression and loss of function phenotypes suggest AVP1 is involved in regulation of apoplastic pH and auxin transport. The effect on auxin transport likely involves effects of extracellular pH on subcellular localization of auxin efflux carriers such as PIN1. Identical to Pyrophosphate-energized vacuolar membrane proton pump 1 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3) (AVP1) [Arabidopsis Thaliana] (GB:P31414;GB:O80390;GB:Q41919;GB:Q41920;GB:Q56WP6;GB:Q8RY20;GB:Q8VZE3); similar to vacuolar-type H+-translocating inorganic pyrophosphatase, putative [Arabidopsis thaliana] (TAIR:AT1G16780.1); similar to AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) [Arabidopsis thaliana] (TAIR:AT1G78920.1); similar to pyrophosphate-ener (GB:AAR08913.2); similar to inorganic pyrophosphatase [Nicotiana tabacum] (GB:CAA58701.1); similar to inorganic pyrophosphatase [Nicotiana rustica] (GB:ABF85694.1); contains InterPro domain Inorganic H+ pyrophosphatase; (InterPro:IPR004131)|Identical to Pyrophosphate-energized vacuolar membrane proton pump 1 (EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase 1) (H(+)-PPase 1) (Vacuolar proton pyrophosphatase 1) (Vacuolar proton pyrophosphatase 3) (AVP1) [Arabidopsis Thaliana] (GB:P31414;GB:O80390;GB:Q41919;GB:Q41920;GB:Q56WP6;GB:Q8RY20;GB:Q8VZE3); similar to AVP2 (ARABIDOPSIS VACUOLAR H+-PYROPHOSPHATASE 2) [Arabidopsis thaliana] (TAIR:AT1G78920.1); similar to pyrophosphate-ener (GB:AAR08913.2); similar to inorganic pyrophosphatase [Nicotiana tabacum] (GB:CAA58701.1); similar to inorganic pyrophosphatase [Nicotiana rustica] (GB:ABF85694.1); contains InterPro domain Inorganic H+ pyrophosphatase; (InterPro:IPR004131) 0.0262204380335369 0.353864691510972 0.73215959960633 1 0.836630219250972 24.7390472506281 0.0262204380335369 0.0437645448225266
AT4G39080_at 9.93238247501513 9.95990379194066 9.87281276160844 9.7372596627288 10.2220186567652 9.8106104262695 10.2060989388731 10.1152095288856 10.0559575212114 10.0808662756695 10.2582213948957 10.013207304098 10.0768725992218 10.2767163897025 10.1272283042681 9.92609847566378 9.69060440216962 10.218886854243 9.8375832957536 0.114884885188078 0.10838886548598 0.117592265373424 0.121738709448859 0.108698591680112 0.127368646766817 0.112645040131248 0.111489919130977 0.114196681593839 0.111302584604502 0.10838886548598 0.109856785649474 0.10838886548598 0.113297779963985 0.112830923929714 0.109591025054478 0.117557277058733 0.109272922723404 0.108803162343654 4 4|0 +|/ 18213786 18214707 18214241.556 18209393 18215050 + gene protein_coding_gene FALSE TRUE AT4G39080.1 VHA-A3 (VACUOLAR PROTON ATPASE A3); ATPase Vacuolar proton ATPase subunit VHA-a isoform 3. Localized in the tonoplast. similar to (VACUOLAR PROTON ATPASE A2), ATPase [Arabidopsis thaliana] (TAIR:AT2G21410.1); similar to VHA-A1 (VACUOLAR PROTON ATPASE A 1), ATPase [Arabidopsis thaliana] (TAIR:AT2G28520.1); similar to V-type ATPase, 116 kDa subunit [Medicago truncatula] (GB:ABE88373.1); similar to putative vacuolar ATPase subunit 100 kDa subunit [Mesembryanthemum crystallinum] (GB:CAD27718.1); similar to vacuolar proton-ATPase subunit-like protein [Lotus japonicus] (GB:CAE45587.1); contains InterPro domain ATPase, V0/A0 complex, 116-kDa subunit; (InterPro:IPR002490) -0.0303564360904831 -0.353294213279006 0.732571817591803 1 0.836421798356202 20.0145112784663 -0.0303564360904831 0.0767414379790965
AT3G57810_at 5.56797367552564 5.62673155301242 6.30131843239837 5.96884623804069 5.97481044787527 5.33421642913325 6.49731894343323 5.90813610085914 5.40809805705728 5.92003633802082 5.59884496679541 5.82299111589505 5.49828922772672 5.84847643928858 5.17745599303016 6.64232111102677 6.1689964566429 5.06576929180953 6.11524095432704 0.266141501292759 0.259125996564776 0.266047347344077 0.259125996564776 0.266204373765579 0.270226306564761 0.273361587206287 0.265093571379343 0.268427666753210 0.266448548314290 0.259446801704373 0.259125996564776 0.271153986330701 0.259125996564776 0.264457330551264 0.259125996564776 0.261775724574656 0.280780830187117 0.270504201770546 3 3|0 +|/ 21427689 21428735 21428371.6 21426761 21428925 + gene protein_coding_gene FALSE TRUE AT3G57810.1|AT3G57810.2|AT3G57810.3 OTU-like cysteine protease family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G38025.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71258.1); similar to Os08g0506000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062186.1); similar to Os09g0487700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063527.1); contains InterPro domain Ovarian tumour, otubain; (InterPro:IPR003323) -0.0459037779352661 -0.351987403017036 0.733516441859212 1 0.835945590950879 11.6685947400741 -0.0459037779352661 0.161552564336048
AT4G29080_at 6.03710725610777 6.37989704587666 5.83979617258391 5.78574901162933 5.58739944944656 5.69775965800916 5.38589471000305 5.60535843862115 5.33886647736722 6.48154165258913 6.08510826091835 6.71763315023089 5.85382275013744 6.58503083848747 6.50751159594299 5.6116947326175 6.50385343085363 6.9388291554357 6.6792505630633 0.160864110341743 0.161607033928698 0.175319753497750 0.168262939506910 0.161525654665342 0.159501495496559 0.168768307931077 0.173688209514525 0.168546774213982 0.158126849248549 0.169704878564311 0.167032661581175 0.164864579659731 0.176308135859644 0.179778492310327 0.163049068621237 0.162825691780949 0.160441795020142 0.166500748096938 4 4|0 -|/ 14324013 14324842 14324373 14323367 14325334 - gene protein_coding_gene FALSE TRUE AT4G29080.1 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2); transcription factor phytochrome-associated protein 2 (PAP2) Identical to Auxin-responsive protein IAA27 (Indoleacetic acid-induced protein 27) (Auxin-induced protein 27) (Phytochrome-associated protein 2) (IAA27) [Arabidopsis Thaliana] (GB:Q9ZSY8); similar to IAA8 (indoleacetic acid-induced protein 8) [Arabidopsis thaliana] (TAIR:AT2G22670.3); similar to Aux/IAA protein-like [Solanum tuberosum] (GB:ABB55368.1); similar to Aux/IAA protein [Solanum tuberosum] (GB:AAM29182.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.0297471509599312 0.351638808565819 0.7337685034567 1 0.835818850536083 12.0483644112853 0.0297471509599312 0.0735776738985048
AT2G29210_at 7.06230474195414 6.7504209055257 7.30291529597376 6.88273182539976 7.5071781678992 7.14334255342521 7.39663172474814 6.77289265871657 7.79552105259103 7.90375102601185 7.63318787886872 8.34147278926865 7.6694482744456 7.54539900591175 6.88830175264122 7.79457384413507 7.5844048133075 7.31907445420613 7.9978895699255 0.166916006283556 0.169642913553009 0.162413678709189 0.173668500131169 0.160998981932322 0.169587129109588 0.169096394095083 0.164641623829718 0.175965338235744 0.160998981932322 0.166830473700877 0.167289735850387 0.165797685436332 0.166270553805685 0.173204220489493 0.162378225566392 0.165954738491796 0.165689590289171 0.165773231950326 2 2 + 12568712 12569176 12568893.182 12565128 12569425 + gene protein_coding_gene FALSE TRUE AT2G29210.1 splicing factor PWI domain-containing protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT4G32420.1); similar to retrotransposon protein, putative, unclassified, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95203.1); contains InterPro domain Splicing factor PWI; (InterPro:IPR002483) -0.0442957891531823 -0.351064339552321 0.734183964719578 1 0.835610253215074 14.8503206014257 -0.0442957891531823 0.154324833380991
AT3G06570_at 5.59145039909317 5.90708537795555 6.06018636875992 5.49874769427602 6.5245146975302 6.68063208414487 6.52280291378448 6.58383412317939 6.37371763909897 6.16109203735938 5.87662779777068 5.99207078736117 6.25882310826042 6.61275605751538 5.7234090101893 6.75734379546679 6.95270337906846 6.47749664732179 6.35924397551101 0.218541026408848 0.222218973523355 0.218037065707622 0.232550445092844 0.217470160494961 0.222733377869447 0.218141643052446 0.215783201712121 0.234180396075666 0.227133667077878 0.221122407172476 0.218469004688508 0.223391565017162 0.217680532909205 0.224537525264423 0.215783201712121 0.225206915682958 0.222034418075896 0.218637154897807 3 3 - 2047408 2047922 2047666 2047311 2048559 - gene protein_coding_gene FALSE TRUE AT3G06570.1 kelch repeat-containing F-box family protein similar to kelch repeat-containing F-box family protein [Arabidopsis thaliana] (TAIR:AT5G51250.1); similar to 117M18_27 [Brassica rapa] (GB:AAZ66946.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043) 0.0365564732770318 0.350219647601082 0.734795021506615 1 0.835304134788083 12.4858675607700 0.0365564732770318 0.115173862324913
AT2G36870_at 4.26774316210277 5.63137877793724 4.53753550436813 4.97336439731341 6.30946020346879 5.81735035024173 9.19771418960183 9.36881762787397 6.54947816230571 8.18314427993483 9.17642429150658 9.7260922823116 9.0916371247946 8.90335668248527 9.7770742418612 8.93588663033842 8.6304816763471 8.8827444974905 7.97415795066257 0.225115440750754 0.215789192811718 0.214479180902058 0.218345613748313 0.205279863146172 0.230331697854212 0.206639428826576 0.200433132708379 0.218838395774123 0.202452560202354 0.200433132708379 0.205190792606720 0.202389151244748 0.201153117823122 0.206085125230107 0.200433132708379 0.203411531419443 0.208485791565351 0.203625231960126 2 0|2 /|- 15479960 15481179 15480507.1 15479724 15481760 - gene protein_coding_gene FALSE TRUE AT2G36870.1 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative Identical to Probable xyloglucan endotransglucosylase/hydrolase protein 32 precursor (EC 2.4.1.207) (At-XTH32) (XTH-32) (XTH32) [Arabidopsis Thaliana] (GB:Q9SJL9); similar to XTR8 (xyloglucan:xyloglucosyl transferase 8), hydrolase, acting on glycosyl bonds [Arabidopsis thaliana] (TAIR:AT3G44990.1); similar to xyloglucan endotransglycosylase 1 [Litchi chinensis] (GB:ABK30788.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycoside hydrolase, family 16; (InterPro:IPR000757); contains InterPro domain Xyloglucan endo-transglycosylase, C-terminal; (InterPro:IPR010713) -0.0677252223867011 -0.348898285911713 0.735751304727378 1 0.834826704010798 14.6176150146266 -0.0677252223867011 0.263639986068900
AT1G33240_at 8.523210713648 8.66748680907061 8.02600193252616 8.58489487533445 9.27405660117732 9.02380394412323 9.06693617470373 8.96753523580388 9.59566819740158 9.48836356963986 10.0622354496235 9.58348840635387 9.78604600013912 9.7415781332959 9.39574096856783 9.84256092378081 9.12213994525396 9.40261512184203 9.74289018583354 0.109659460795978 0.101942383898297 0.121688740411163 0.11006695788581 0.100393677144009 0.105545968858551 0.101226482708888 0.100007578599834 0.117998171362284 0.099889703762869 0.100964060735147 0.101154316645236 0.100517692117580 0.104870892818529 0.105624349634078 0.0999487297980342 0.106359041185692 0.102119469828831 0.0994314937482197 1 1 - 12051847 12052385 12052150.909 12051451 12054526 - gene protein_coding_gene FALSE TRUE AT1G33240.1 AT-GTL1 (Arabidopsis thaliana GT2-like 1); transcription factor Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone. similar to trihelix DNA-binding protein, putative [Arabidopsis thaliana] (TAIR:AT1G76880.1); similar to OSJNBa0011L07.15 [Oryza sativa (japonica cultivar-group)] (GB:CAE02791.2); similar to Hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAO17016.1); similar to Os03g0113500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048736.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0355131303503984 -0.348835653734826 0.735796644373242 1 0.834804117360982 18.3797530872478 -0.0355131303503984 0.110224254137367
AT4G14900_at 5.69579301437582 5.98153470313939 5.46729019727944 5.28923912864543 5.97973103323871 5.79284189232842 4.52119686249275 4.9314584624095 4.50996503926078 4.89568008384314 4.32452897903851 4.79656959240657 4.94219470342778 4.78441062611843 4.16719326269301 4.670866203663 4.73344903887869 4.87244502299334 5.42897073797182 0.209206433916953 0.205554857559150 0.213949345035745 0.205100388324028 0.203663009085864 0.203913900885298 0.200458850603232 0.199068897187141 0.20307183636452 0.202885623046103 0.203258946216515 0.204510711865625 0.201638311956896 0.202907191028546 0.216739141759604 0.199068897187141 0.205402065806168 0.205975133096584 0.204921419840588 4 0|4 /|- 8521827 8522110 8521966.556 8521517 8523700 - gene protein_coding_gene FALSE TRUE AT4G14900.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT3G22440.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC83627.1); contains InterPro domain Frigida-like; (InterPro:IPR012474) 0.03318251361457 0.34797013835104 0.736423305716998 1 0.834492394590942 10.2605502279108 0.03318251361457 0.0973719138845502
AT1G01360_at 7.67626257156028 8.25383000841716 7.88125706235114 7.83318811651466 8.95293696285048 8.49723540453383 8.49420749942426 8.65962414706684 7.73591740620493 7.56075760567079 7.34470615482927 7.31616035227693 7.94823990104986 7.7907622616879 6.98983968872281 8.07001159739387 7.35914598608285 7.50944745826712 7.62185059561423 0.186855722216046 0.180082887690849 0.183148894784594 0.181218775217642 0.180789541810510 0.176571813380836 0.176477140950749 0.178264703077812 0.185712552975239 0.17897290653174 0.175689991614384 0.177531258559906 0.177195936031709 0.179922533984495 0.178049994920850 0.174036451618102 0.189306266490986 0.177143191791443 0.174827577116889 1 1|0 +|/ 142140 142886 142442.1 141971 143181 + gene protein_coding_gene FALSE TRUE AT1G01360.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G01026.1); similar to CAPIP1 [Capsicum annuum] (GB:AAT35532.1); contains domain Bet v1-like (SSF55961); contains domain no description (G3D.3.30.530.20) -0.0391480154228796 -0.347097570497433 0.73705528406685 1 0.83417889204573 15.8713415770242 -0.0391480154228796 0.130758957132933
AT1G50430_at 9.41771633613993 9.4870983964476 9.19504704299642 9.11954163549795 9.11060454110661 8.72012022080396 8.54071300208063 8.31999561672046 8.75694862474174 8.39796102178873 8.48622390392759 8.80725022273879 8.07527899233169 8.42751970372183 8.76072667401837 8.11464050805798 8.29178115958528 8.81091305281931 8.36392762249827 0.136858285692432 0.138599350847989 0.138331509690567 0.140369924286922 0.138547481363001 0.153422538668597 0.136657533753515 0.136848499532161 0.15609444227992 0.141303615772732 0.145866855968927 0.131520317980029 0.136596740751737 0.142724769874244 0.134420291841088 0.134879270525445 0.149550952744973 0.134774824540933 0.143876658606463 1 0|1 /|- 18686000 18687045 18686281.5 18685600 18689318 - gene protein_coding_gene FALSE TRUE AT1G50430.1|AT1G50430.2 DWF5 (DWARF 5); sterol delta7 reductase|DWF5 (DWARF 5) Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype. Identical to 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC reductase) (Sterol Delta(7)-reductase) (Dwarf5 protein) (DWF5) [Arabidopsis Thaliana] (GB:Q9LDU6;GB:Q38930); similar to FK (FACKEL), delta14-sterol reductase [Arabidopsis thaliana] (TAIR:AT3G52940.1); similar to sterol delta-7 reductase (GB:AAC49278.1); similar to sterol delta-7 reductase [Tropaeolum majus] (GB:AAR29980.1); similar to sterol delta-7 reductase DWF5 [Gossypium hirsutum] (GB:ABA01480.1); contains InterPro domain ERG4/ERG24 ergosterol biosynthesis protein; (InterPro:IPR001171)|Identical to 7-dehydrocholesterol reductase (EC 1.3.1.21) (7-DHC reductase) (Sterol Delta(7)-reductase) (Dwarf5 protein) (DWF5) [Arabidopsis Thaliana] (GB:Q9LDU6;GB:Q38930); similar to FK (FACKEL), delta14-sterol reductase [Arabidopsis thaliana] (TAIR:AT3G52940.1); similar to sterol delta-7 reductase (GB:AAC49278.1); similar to sterol delta-7 reductase [Tropaeolum majus] (GB:AAR29980.1); similar to sterol delta-7 reductase DWF5 [Gossypium hirsutum] (GB:ABA01480.1); contains InterPro domain ERG4/ERG24 ergosterol biosynthesis protein; (InterPro:IPR001171); contains InterPro domain Gamma-crystallin related; (InterPro:IPR011024) 0.0302301048639682 0.346815424080699 0.737259680634544 1 0.83407768376617 17.4778900323874 0.0302301048639682 0.0796256657603927
AT1G04780_at 7.70294531843883 8.07036085996393 8.20421448971824 8.23366580960864 8.36535736721075 8.17774473576759 7.78763140650208 7.85537908655802 7.94667863702153 7.7429897106231 7.19948227782388 7.38713151940703 7.23047463220915 7.54501903585276 7.12218810440334 7.4923386508877 7.60903680623317 7.76924166803597 7.56687829503497 0.170275381129388 0.178820150651312 0.172646569326129 0.173182303650594 0.170521647003771 0.171053961260863 0.170208756162672 0.174198024761331 0.188036310310976 0.172637481426091 0.178941933168257 0.169373988964001 0.179239208720487 0.176418972179446 0.171169185787044 0.166754205580478 0.185579258857005 0.169198199288957 0.170071247390841 1 1|0 -|/ 1340890 1341469 1341211.4 1340668 1343583 - gene protein_coding_gene FALSE TRUE AT1G04780.1 ankyrin repeat family protein similar to ankyrin repeat family protein [Arabidopsis thaliana] (TAIR:AT3G24210.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G04470.1); similar to Os02g0810100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048467.1); similar to Os07g0436100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059505.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC80109.1); contains InterPro domain Ankyrin; (InterPro:IPR002110) 0.0291741526703420 0.346638416961078 0.73738792194511 1 0.834014230584233 15.6354355347626 0.0291741526703420 0.072528241487868
AT3G07160_at 9.32173590040285 9.19659366572735 9.30516110895957 9.185244575415 9.46861583201365 8.92061777967224 9.12119232529957 8.85866569569524 8.92072172554117 9.04114553438859 8.97079606668426 9.02944887286154 8.91300774628456 8.9545421939737 8.82734451521332 9.07706858719225 8.80051554795406 9.09644575759093 8.98954814240298 0.109385740456610 0.105527369825699 0.105440006442772 0.104410082552437 0.102536962141837 0.111810937457986 0.106150694541990 0.105582359082441 0.120694681871173 0.102536962141837 0.107518421016626 0.102536962141837 0.102798162737080 0.107640406123380 0.111634514822465 0.104636674649241 0.116543676017516 0.105960838318842 0.106863621189741 3 0|3 /|- 2265177 2265966 2265449.889 2264951 2279389 - gene protein_coding_gene FALSE TRUE AT3G07160.1 ATGSL10 (GLUCAN SYNTHASE-LIKE 10); 1,3-beta-glucan synthase encodes a gene similar to callose synthase similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL08 (GLUCAN SYNTHASE-LIKE 8), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G36850.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to beta 1,3 glucan synthase [Lolium multiflorum] (GB:AAQ17229.1); similar to putative callose synthase [Hordeum vulgare subsp. vulgare] (GB:AAO46087.1); similar to putative callose synthase catalytic subunit [Gossypium hirsutum] (GB:AAD25952.1); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) 0.0351019770461372 0.346330528621489 0.737611007123825 1 0.833903934211068 18.1434540079383 0.0351019770461372 0.109348454888187
AT3G48990_at 11.7375237090309 11.9080211721727 11.9090999723898 12.0017476616664 12.0739084760904 11.7032901277882 11.9604806597505 12.0744979135713 11.6626746898832 12.1020696531739 12.1127816806556 11.9225920243141 12.1254566076662 11.7565306253207 11.5072919302760 11.9998702267275 11.8756876593874 12.0265291009217 11.8114831134447 0.0783714517614198 0.0795107937395208 0.0840071335276951 0.0813570052573752 0.0785271411455263 0.081778600309569 0.0838143491042526 0.0819485108301905 0.0885329873056224 0.080793475223862 0.0804266576664908 0.0793928116751215 0.0800057515446811 0.0906211793910854 0.0804286186765342 0.0788481195958686 0.0943779834589612 0.0823384198270339 0.0795229810203491 3 3|0 -|/ 18170025 18170988 18170446 18169732 18172356 - gene protein_coding_gene FALSE TRUE AT3G48990.1 AMP-dependent synthetase and ligase family protein similar to 4-coumarate--CoA ligase, putative / 4-coumaroyl-CoA synthase, putative [Arabidopsis thaliana] (TAIR:AT4G05160.1); similar to putative acyl-CoA synthetase [Capsicum annuum] (GB:AAL29212.1); similar to Os04g0683700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054304.1); contains InterPro domain AMP-dependent synthetase and ligase; (InterPro:IPR000873) 0.0294903461302158 0.34611466497456 0.737767430064932 1 0.833826660999487 23.8083636952622 0.0294903461302158 0.0750368840837565
AT4G29840_at 8.56004758814875 8.8579277117388 8.2228684394453 8.35095229712708 8.25518180165342 8.50538377678915 8.29172264449545 8.49023411760245 7.10750386401281 7.4902548522548 6.81357695298147 7.68447286530054 7.38355364322169 7.2555207280642 7.93709765933541 7.19724737105745 8.08144352749709 7.59043409783427 7.41185969309128 0.195467444492799 0.203344634577369 0.192584461317217 0.196459395656695 0.195563688149694 0.223874113299065 0.199735918191555 0.198316002959928 0.212999254293198 0.198037806635983 0.197838587602258 0.193273660908614 0.205663183584186 0.203420511718825 0.201268443340295 0.206703422250009 0.204705582316711 0.191866056578937 0.191288631584208 4 4 - 14599507 14599895 14599678.545 14599222 14601061 - gene protein_coding_gene FALSE TRUE AT4G29840.1 MTO2 (METHIONINE OVER-ACCUMULATOR); threonine synthase threonine synthase Identical to Threonine synthase, chloroplast precursor (EC 4.2.3.1) (TS) [Arabidopsis Thaliana] (GB:Q9S7B5;GB:Q39144); similar to threonine synthase, putative [Arabidopsis thaliana] (TAIR:AT1G72810.1); similar to Threonine synthase, chloroplast precursor (TS) (GB:Q9MT28); similar to Pyridoxal-5-phosphate-dependent enzyme, beta subunit [Medicago truncatula] (GB:ABE81529.1); similar to threonine synthase (GB:AAB04607.1); contains InterPro domain Serine/threonine dehydratase, pyridoxal-phosphate-binding site; (InterPro:IPR000634); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Threonine synthase; (InterPro:IPR004450) -0.0300037754337033 -0.345702676774509 0.738066008040455 1 0.833679310354709 15.8565187098490 -0.0300037754337033 0.0787628556532987
AT2G19310_at 7.7333763488964 8.0082543046581 7.68270556649677 8.15392711822483 7.8443260688022 8.16709300439561 7.78225713299373 8.18035912135552 7.73365848116382 8.25453657230715 8.20590889201241 7.2165660802483 8.25267991442083 7.71497273200031 7.86433175910924 8.42735438242756 8.3335847700863 7.55292634614676 8.1902902363314 0.176910976574035 0.174118201832110 0.174902826994601 0.172073409822365 0.174814470155969 0.171516056070291 0.170498108255979 0.182179077373956 0.178927747498194 0.171855638886097 0.173491935575089 0.174131687914790 0.172976686863232 0.173577179533067 0.179001650808332 0.172755286362012 0.195080463104253 0.174524266346696 0.172624944654369 2 2 - 8377020 8377433 8377245.273 8376876 8377488 - gene protein_coding_gene FALSE TRUE AT2G19310.1 similar to HSP18.2 (HEAT SHOCK PROTEIN 18.2) [Arabidopsis thaliana] (TAIR:AT5G59720.1); similar to low molecular weight heat-shock protein [Corylus avellana] (GB:AAD15628.1); similar to 18.5 kDa class I heat shock protein (HSP 18.5) (GB:P05478); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) -0.0387516372702037 -0.345652987114258 0.738102022530616 1 0.833661549984095 15.9468051863065 -0.0387516372702037 0.129533621420865
AT3G10630_at 6.39835969058311 6.60998635374001 5.85771121764962 6.20113858055098 6.70903161692253 6.86710662535579 6.47745057297944 6.50375498539189 5.65938748791682 5.91044129117417 5.75288779704341 5.64828462215781 5.84904666851649 6.12029318917797 6.1550181148743 6.20679431927942 6.16670808251611 5.50445204686393 5.76385426226436 0.195905645960443 0.195099795356784 0.194253644343012 0.193715562675888 0.190624213149424 0.202134845721934 0.190549821251963 0.192541821316752 0.206109091539207 0.190549821251963 0.191499678827133 0.195327276902569 0.190660262134827 0.20628607128914 0.196172532536075 0.194134576440336 0.199281962449648 0.199970366398259 0.191294957523548 3 3 - 3321781 3322237 3322045.455 3321468 3323216 - gene protein_coding_gene FALSE TRUE AT3G10630.1 glycosyl transferase family 1 protein similar to Os09g0296700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062800.1); similar to Glycosyl transferase, family 2:Glycosyl transferase, group 1 [Roseiflexus sp. RS-1] (GB:ZP_01359188.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.0294501836906753 0.345508601760209 0.738206675235323 1 0.833609956976852 12.3047324314827 0.0294501836906753 0.0751160565313328
AT1G50510_at 7.57363584608405 8.2093211921246 7.98984429652002 7.45461053849043 8.78950115888322 8.08326624896604 7.6849426913829 7.43377886463301 7.34468852204419 7.11231130744827 6.55796643684987 6.8372899833421 6.97780319584825 6.76616214864234 6.61750925144524 6.76438711135088 6.94572836534229 6.67294315553515 7.21675246198304 0.292093139539325 0.287265565527967 0.284675058217300 0.320215603986485 0.291260977704504 0.2910926302985 0.279223289221801 0.294052083527874 0.313132470081185 0.289621455471209 0.280678226318683 0.279223289221801 0.279223289221801 0.288330751932884 0.281943878871128 0.297092453904500 0.295989362087660 0.312645081744088 0.287647665339657 1 1 + 18721688 18722688 18722280.857 18719780 18722996 + gene protein_coding_gene FALSE TRUE AT1G50510.1 indigoidine synthase A family protein similar to Erwinia chrysanthemi IndA protein homolog-like [Oryza sativa (japonica cultivar-group)] (GB:BAD08822.1); contains InterPro domain Indigoidine synthase A like protein; (InterPro:IPR007342) -0.0516122394775986 -0.344537119968144 0.738910969715706 1 0.833263362605068 14.8983915062370 -0.0516122394775986 0.193668353655453
AT2G46800_at 8.74993465062644 9.04901269106036 8.88076114281758 8.85179254182297 9.4989350691076 8.69079265821421 8.87406899392918 8.90199465588248 9.49902128349868 9.14326834707442 9.3528186952383 9.13423194812444 9.21773642259098 9.21971157932927 9.03584542268195 9.29655368125871 8.89765350719492 9.19880600366926 9.38040112668407 0.117125042452341 0.117985068386750 0.124630657334918 0.117744879538261 0.11928003091815 0.135533040122459 0.121613350652479 0.119629942433743 0.125062144345918 0.116159124860605 0.116955999267189 0.115351144002041 0.114232463619711 0.124499706775643 0.123134459580744 0.115379567991484 0.128691258211486 0.119801331178496 0.115016832721965 2 2 + 19245805 19246276 19246089.727 19244503 19246474 + gene protein_coding_gene FALSE TRUE AT2G46800.1|AT2G46800.2 ATMTP1/MTP1/ZAT1 (ZINC TRANSPORTER OF ARABIDOPSIS THALIANA); zinc ion transporter Encodes a member of the zinc transporter (ZAT) and cation diffusion facilitator (CDF) families. It is expressed throughout the plant, especially in dividing, differentiating and expanding cells. The protein is localized to the vacuolar membrane. Mediates Zn ion homeostasis. Identical to Metal tolerance protein 1 (AtMTP1) (Zinc transporter ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1 short form] (MTP1) [Arabidopsis Thaliana] (GB:Q9ZT63;GB:O81036); similar to MTPA2, efflux permease/ zinc ion transporter [Arabidopsis thaliana] (TAIR:AT3G58810.2); similar to heavy metal transporter MTP1 [Thlaspi arvense] (GB:AAR83906.1); similar to metal tolerance protein 1 variant a [Thlaspi goesingense] (GB:AAS67024.1); similar to metal tolerance protein 1 variant c [Thlaspi goesingense] (GB:AAS67026.1); contains InterPro domain Cation efflux protein; (InterPro:IPR002524) -0.0424548282293860 -0.344448980032448 0.738974881346175 1 0.833231963883062 18.1921948387310 -0.0424548282293860 0.149285187517195
AT3G19170_at 11.1794518622007 11.2319365649158 11.5699122202284 11.4600041889611 11.7534719438158 11.0598504370681 12.0130097397196 11.6099732748361 11.3538228278622 11.5605394786022 11.5315393172935 11.4378109620460 11.7400637046353 11.4885897166089 11.4659282056835 11.8476627968434 11.6914737463841 11.6120880988678 11.5039275588500 0.0895922070770681 0.0868580474607181 0.0922129923776767 0.0885054860788691 0.088309101811316 0.0955686080937537 0.0876059595821906 0.0866897717772318 0.095539461552765 0.0893616310644278 0.0882566184355362 0.0872852221883851 0.0883750400336224 0.0960194704415367 0.0889889248431487 0.0866897717772318 0.0917411639344552 0.0919411995939171 0.0870444559272804 3 3 - 6625600 6626491 6626050 6625427 6631946 - gene protein_coding_gene FALSE TRUE AT3G19170.1 ATPREP1/ATZNMP (PRESEQUENCE PROTEASE 1); metalloendopeptidase Zinc metalloprotease pitrilysin subfamily A. Signal peptide degrading enzyme targeted to mitochondria and chloroplasts. Expressed only in siliques and flowers Identical to Presequence protease 1, chloroplast/mitochondrial precursor (EC 3.4.24.-) (PreP 1) (AtPreP1) (Zinc metalloprotease 1) (AtZnMP1) (PREP1) [Arabidopsis Thaliana] (GB:Q9LJL3;GB:Q8RUN6); similar to ATPREP2, metalloendopeptidase [Arabidopsis thaliana] (TAIR:AT1G49630.2); similar to Metalloendoprotease HMP1 (insulinase superfamily) (ISS) [Ostreococcus tauri] (GB:CAL56365.1); similar to Peptidase M16C associated domain protein [Syntrophobacter fumaroxidans MPOB] (GB:YP_845783.1); similar to Peptidase M16C associated [Roseiflexus castenholzii DSM 13941] (GB:ZP_01532830.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16C associated; (InterPro:IPR013578); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) 0.0406740586037377 0.344148885856288 0.739192500326944 1 0.833125117637437 23.0220302074599 0.0406740586037377 0.140418009412386
AT4G27690_at 5.95075605082955 6.86424771504893 6.16226962172978 6.16651217864971 6.91416204757142 6.42408263524017 6.29336583351597 6.009712869958 5.53833084649086 5.44407007523521 5.36765671044718 5.22924448528938 5.5056477195912 5.69518584436597 5.20595886490371 5.11061571369 4.85466652309194 5.17592603403091 5.53324966755589 0.230883189680587 0.229382518935011 0.232167254803798 0.241466620893292 0.231161670265461 0.235423102023995 0.239449275677855 0.232697240214249 0.238365609538573 0.230556227337946 0.234289687004038 0.232324083508838 0.229382518935011 0.24039574845997 0.232897484283266 0.231168605302021 0.248587367559159 0.233022180059489 0.235211693279983 4 4|0 +|/ 13824963 13826096 13825664.333 13823594 13826401 + gene protein_coding_gene FALSE TRUE AT4G27690.1|AT4G27690.2 vacuolar protein sorting-associated protein 26, putative / VPS26, putative Identical to Vacuolar protein sorting-associated protein 26 (VPS26 protein homolog) [Arabidopsis Thaliana] (GB:Q9T091;GB:Q8L3V2); similar to vacuolar protein sorting-associated protein 26, putative / VPS26, putative [Arabidopsis thaliana] (TAIR:AT5G53530.1); similar to vacuolar protein sorting-associated protein 26-like protein [Solanum tuberosum] (GB:ABA46760.1); contains InterPro domain Vacuolar protein sorting-associated protein 26; (InterPro:IPR005377) -0.0499340613540232 -0.344145143669318 0.739195214201376 1 0.833123785830783 11.7348034190781 -0.0499340613540232 0.1859932606947
AT1G47260_at 9.74263413737727 9.78379219461586 9.79058423027414 9.76448712485069 9.48109028702184 9.45149917747008 10.0496828996485 10.2620910256542 9.40650971699383 9.70784311725277 9.90646095632854 10.0816510460477 9.8195463230158 9.47060801686927 9.9713994869783 9.79591337456158 9.70030316985492 9.93203672802293 9.52650213142817 0.134166674561235 0.133448720120680 0.139806115630549 0.139367931226377 0.139511015515421 0.134908787275368 0.133439158160033 0.142326569682563 0.153951636835905 0.133443875594699 0.138222286536600 0.131632954009253 0.134094775681644 0.151259132854259 0.144075942494885 0.131796769800739 0.144905335615344 0.138035532942754 0.136241333699393 1 0|1 /|- 17323862 17325008 17324259.778 17323613 17325924 - gene protein_coding_gene FALSE TRUE AT1G47260.1 APFI; carbonate dehydratase Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. similar to GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1), carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G19580.1); similar to Os12g0169700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066265.1); similar to transcription factor APFI-like [Solanum tuberosum] (GB:ABB86281.1); similar to Os07g0642900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060439.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.0249233134674101 -0.343382851082853 0.739748117385086 1 0.832852786605222 19.4815784060815 -0.0249233134674101 0.0380593950213592
AT3G03560_at 8.26095388260339 7.9355588653708 8.02390408921702 7.47087291913147 7.80096121607198 6.97939890172769 7.73291807102913 6.91054120310754 6.58347597898271 5.33733335913748 5.7883523292022 5.91068036048945 6.19161760343846 6.26867590121082 5.53119883806825 5.8826306973371 6.63932093049969 6.29765548176266 5.49243319978215 0.247452485915711 0.237896041338418 0.242062135109136 0.249640324687443 0.238655057398836 0.245898487986516 0.237707484594570 0.241090260711224 0.248431189226678 0.237707484594570 0.248017391067926 0.239280160088793 0.237707484594570 0.242048367334102 0.252156193601037 0.241006489906527 0.252264360156445 0.237707484594570 0.239936891138721 3 3|0 -|/ 854193 854870 854555.714 852947 856493 - gene protein_coding_gene FALSE TRUE AT3G03560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G23490.1); similar to Os03g0707300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051031.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF98471.1) 0.0590718072298125 0.342640148898346 0.740286964968562 1 0.832589312854738 13.5734789920583 0.0590718072298125 0.229778131371049
AT4G11790_at 5.59557288163812 5.63345395207083 5.25074551551561 5.27479542652198 6.05081383736438 5.53040919118539 5.60367725361893 5.94637693884921 5.47637146209372 5.29442962079849 5.48361545291966 5.7147215158149 5.38534610315026 5.7862161000867 5.54811121873356 5.4350310990316 5.309265817278 5.55582966302679 5.51375525950225 0.196889598010682 0.200492908603141 0.200900913522432 0.212475959897614 0.205081455918554 0.201936831150649 0.197918724280412 0.204851369568587 0.203068665352195 0.202632909930264 0.197670914902461 0.200182670839398 0.198811658738145 0.204310080077140 0.201487574057324 0.202958434649712 0.204443383568093 0.200034436477509 0.200870121445953 4 4|0 +|/ 7092052 7093168 7092640.111 7090347 7093469 + gene protein_coding_gene FALSE TRUE AT4G11790.1 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein similar to nucleoporin family protein [Arabidopsis thaliana] (TAIR:AT1G59660.1); similar to RanBP1 domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98085.1); similar to expressed protein, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAR87180.1); contains InterPro domain RanBP1; (InterPro:IPR000156); contains InterPro domain Pleckstrin homology-type; (InterPro:IPR011993) -0.0344987950535354 -0.342522435802784 0.740372382440059 1 0.832547604948505 11.0884569089556 -0.0344987950535354 0.108111037188392
AT4G35940_at 5.21974165095472 5.4879705014904 4.8382199935219 5.30541150780593 5.31166481310757 5.24749247346385 4.45508989376156 5.27713032175489 5.47471939545357 4.93370565543873 4.94532515739694 4.9127680395054 4.8698431480454 5.03004958155298 4.89395984934386 4.81742173271477 4.91443836773302 5.15410792581742 4.8934823856961 0.171416119204712 0.171610900895287 0.184352143562284 0.179963860732509 0.178064057352570 0.186750167547123 0.174932100919087 0.174274705433382 0.187701433850029 0.168987097631615 0.169910471326964 0.167331914164854 0.173983305232187 0.174349389689235 0.168777074817062 0.170585903782563 0.171735957036050 0.171016032444812 0.170413222368453 4 4 + 17023037 17023552 17023336.455 17021675 17023767 + gene protein_coding_gene FALSE TRUE AT4G35940.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G17787.1); similar to glutamic acid-rich protein [Plasmodium falciparum] (GB:AAG14291.1) -0.0463412409739938 -0.34150435138031 0.741111304921437 1 0.832187459501165 10.1642776632125 -0.0463412409739938 0.170446385369626
AT1G09570_at 9.55148606976373 9.68486143314779 8.99620056341695 9.22258619571826 10.0427780904632 9.75512871683413 8.6394825949139 8.89422218077367 9.55670670622164 9.66747600451733 9.60150442312993 9.54021944002927 9.4415425422183 9.11144631296411 9.4534986911684 9.17424535019378 9.0557046989687 9.32549000598331 9.90364661165973 0.122641450491157 0.126288319814841 0.129301790590249 0.121978128902629 0.122771484566465 0.124979120006143 0.128080346702648 0.123468619289912 0.135275375725612 0.126354666969055 0.12517959758043 0.122334646208427 0.133391851808681 0.136814578696575 0.125329417076534 0.123349563121397 0.136288150558069 0.141224233465747 0.124638148138696 1 1 - 3095502 3096205 3095841.182 3095258 3100359 - gene protein_coding_gene FALSE TRUE AT1G09570.1 PHYA (PHYTOCHROME A); G-protein coupled photoreceptor/ signal transducer Light-labile cytoplasmic red/far-red light photoreceptor involved in the regulation of photomorphogenesis. It exists in two inter-convertible forms: Pr and Pfr (active) and functions as a dimer.The N terminus carries a single tetrapyrrole chromophore, and the C terminus is involved in dimerization. It is the sole photoreceptor mediating the FR high irradiance response (HIR). Major regulator in red-light induction of phototropic enhancement. Involved in the regulation of de-etiolation. Involved in gravitropism and phototropism. Requires FHY1 for nuclear accumulation. Identical to Phytochrome A (PHYA) [Arabidopsis Thaliana] (GB:P14712); similar to PHYD (PHYTOCHROME DEFECTIVE D), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT4G16250.1); similar to PHYC (PHYTOCHROME DEFECTIVE C) [Arabidopsis thaliana] (TAIR:AT5G35840.1); similar to PHYB (PHYTOCHROME B), G-protein coupled photoreceptor/ signal transducer [Arabidopsis thaliana] (TAIR:AT2G18790.1); similar to phytochrome A [Armoracia rusticana] (GB:BAA99408.1); similar to phytochrome A [Armoracia rusticana] (GB:BAA99410.1); similar to phytochrome A [Armoracia rusticana] (GB:BAA99409.1); contains InterPro domain Histidine kinase; (InterPro:IPR005467); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain Phytochrome, central region; (InterPro:IPR013515); contains InterPro domain PAS; (InterPro:IPR000014); contains InterPro domain PAS fold-2; (InterPro:IPR013654); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Phytochrome; (InterPro:IPR001294); contains InterPro domain Phytochrome A/B/C/D/E; (InterPro:IPR012129); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain PAS fold; (InterPro:IPR013767); contains InterPro domain Phytochrome chromophore binding site; (InterPro:IPR013516) -0.0298298428796158 -0.340639764486155 0.741739042101865 1 0.831882430824924 18.8719596675697 -0.0298298428796158 0.080553899519435
AT3G15060_at 6.44115985266651 6.66433634309783 5.69035023100826 5.87073455874672 6.85462394210414 6.5713693129295 4.6834999244694 5.58752004453891 5.967256930738 5.74690923664692 5.91243663277784 5.3165865724657 5.16689811314468 5.77810516780061 5.37067270476037 5.50683044117444 4.68601987246765 5.12546662582911 5.28931478899499 0.229574330800386 0.224081682266945 0.232972655677796 0.227236290202725 0.227380927061577 0.234316285840748 0.229401111322705 0.227521183579753 0.235970380910941 0.228043693398945 0.225337093624493 0.236174252244929 0.230611758064009 0.237796037046015 0.225208856171284 0.227801125796304 0.242572583311853 0.241117791939497 0.228117487678934 3 3|0 +|/ 5069317 5069939 5069592.1 5069173 5070207 + gene protein_coding_gene FALSE TRUE AT3G15060.1 AtRABA1g (Arabidopsis Rab GTPase homolog A1g); GTP binding similar to AtRABA1f (Arabidopsis Rab GTPase homolog A1f), GTP binding [Arabidopsis thaliana] (TAIR:AT5G60860.1); similar to GTP-binding protein [Pisum sativum] (GB:BAA02112.1); similar to Os05g0564400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056333.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.046345250423286 0.340251745850012 0.742020831147598 1 0.831745780856972 11.5583012770764 0.046345250423286 0.171300675753038
AT1G77850_at 6.7691329973113 6.4526850627393 6.61602534320741 6.16257468206535 7.0573565768268 6.83884149335329 6.88536677681775 6.50993075331183 6.16971317496573 6.09201866514036 6.18502081155066 6.33118934331421 6.20561276381299 6.35983254944075 5.76357648991169 5.76525168179154 6.8311693035068 6.04231328815432 6.11805087486956 0.170304475342192 0.163498680882770 0.170452157160836 0.171353826612192 0.165517244995518 0.166318082542423 0.170327136803924 0.164204595171779 0.183484869037173 0.162717872036109 0.162717872036109 0.163643322842971 0.166062786997885 0.167095377086036 0.172561820562666 0.173896957136631 0.164299198455887 0.162717872036109 0.165837445328525 1 1 + 29279016 29279492 29279261 29277207 29280313 + gene protein_coding_gene FALSE TRUE AT1G77850.1 ARF17 (AUXIN RESPONSE FACTOR 17); transcription factor Posttranscriptionally regulated by miR160 and is essential for proper development.Regulates early auxin response genes. Identical to Auxin response factor 17 (ARF17) [Arabidopsis Thaliana] (GB:Q84WU6;GB:Q93ZY5;GB:Q9CA12;GB:Q9SH16); similar to ARF10 (AUXIN RESPONSE FACTOR 10), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G28350.1); similar to ARF16 (AUXIN RESPONSE FACTOR 16), miRNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G30080.1); similar to putative auxin response factor 10 [Oryza sativa (japonica cultivar-group)] (GB:BAD23727.1); similar to Os02g0628600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047488.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.0366610834641605 0.339945627823084 0.742243170861784 1 0.83163808086004 12.8175342193344 0.0366610834641605 0.121688053613478
AT1G74090_at 11.0585383286681 11.2871361071044 10.6784982744395 10.8638659832728 11.0850471482375 10.9339754483286 11.3382541443586 11.4350269960211 9.90162760955095 11.0353541320941 10.919852147463 10.7116230830433 10.9996801541394 10.9957638969849 10.2541969978670 10.7789072356704 11.1502727001011 11.0848485098177 10.3190419305207 0.0787402226798839 0.0787402226798839 0.0822678701167692 0.079550136114924 0.0787402226798839 0.0812074204067077 0.0806874293613166 0.0792687872825047 0.0875992915436188 0.0830378589843344 0.0814126836323828 0.0787402226798839 0.0795058876899668 0.0817110672961788 0.0815204365073125 0.0804594288993526 0.0826167434600291 0.0793163840220844 0.0855709296406483 1 1 + 27867197 27867682 27867416.545 27866570 27867854 + gene protein_coding_gene FALSE TRUE AT1G74090.1 sulfotransferase family protein similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT1G18590.1); similar to Flavonol 4'-sulfotransferase (F4-ST) (GB:P52837); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) 0.0269131763894066 0.339811151256424 0.74234085198797 1 0.831590798394337 21.7253266278160 0.0269131763894066 0.0596488512270359
AT3G54360_at 9.70609342204685 9.8233788030634 10.0427650194626 9.94457151614294 10.4332289001740 10.0066190380263 10.2598365029928 10.064351815912 9.92237063916756 10.1498711667207 10.0605559568860 9.83136308579879 10.0405971726771 9.83866854247974 9.89180586741293 10.0955929244995 9.7959244320137 9.95484506237927 9.99129509729717 0.0948884052233783 0.0941545949748021 0.0940435902337333 0.09493157002936 0.0994457020980317 0.103134826661756 0.0963593958772534 0.0928260058718297 0.102065351937292 0.0973503041060362 0.0934330871176016 0.0948228490614957 0.0930524383680202 0.098543489587349 0.0995455897514915 0.0959354854711709 0.100638246609556 0.098832323111095 0.096574591006343 3 3|0 -|/ 20139550 20141651 20140584.7 20139283 20142832 - gene protein_coding_gene FALSE TRUE AT3G54360.1 binding / protein binding / zinc ion binding similar to Os02g0795300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048384.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD44834.1); similar to Os01g0104100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041762.1); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0304355726187981 0.33916570426343 0.742809760509831 1 0.831364109697712 20.0150296763510 0.0304355726187981 0.0854140149031477
AT4G17530_at 9.5205450931804 9.57164841964791 9.90124906037147 9.92357295155758 9.8516422318427 9.72037872713154 10.2348920290545 10.2516778073479 10.3288818236667 10.1472277706393 10.3498453540074 10.0894426400123 10.2222280747500 10.2777424245339 9.87375994609732 10.3006818153721 10.2006861043418 10.1068424875922 10.0621306091599 0.0993173034304575 0.10114357810199 0.103923530360597 0.100655756093477 0.0990939228808147 0.101638478994064 0.101815644582946 0.0990799011921645 0.100346865323508 0.101165125526671 0.094670235326982 0.0969600680475129 0.0970677054192392 0.0988908416687602 0.0973412418680342 0.0930462080001764 0.0986986636931729 0.101293192617383 0.102495731019516 4 4|0 -|/ 9773753 9774883 9774223.8 9773561 9775620 - gene protein_coding_gene FALSE TRUE AT4G17530.1 RAB1C; GTP binding Encodes AT5g47200 (AT5g47200/MQL5_5). similar to AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b), GTP binding [Arabidopsis thaliana] (TAIR:AT5G47200.1); similar to GTP-binding protein, putative [Brassica oleracea] (GB:ABD65068.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.023619944949393 -0.33838267880964 0.743378770051652 1 0.831089663785407 20.0504842935136 -0.023619944949393 0.0248511414754285
AT2G35795_at 7.51582873155604 7.60014340895744 7.52859090192184 7.80804438248173 8.26957948477027 7.67320866086226 7.8307563634869 7.94923271975253 7.69635285498983 7.49708829069163 7.1451889389134 7.19528589027973 7.49346073969333 7.62401761059673 7.22757410227352 7.57659785522498 7.24439785859386 7.37917458114593 7.387669071725 0.152099236173409 0.147276317272546 0.15344353305348 0.158857966496546 0.154036147667151 0.160150786010327 0.156711094320205 0.16114368068817 0.150250509361136 0.157142223560162 0.152362126845754 0.151488351210615 0.147661024807981 0.148999170396831 0.155885222656026 0.147544697542443 0.162765274861509 0.147276317272546 0.153400221157054 2 0|2 /|+ 15049937 15050335 15050109.111 15049254 15050654 + gene protein_coding_gene FALSE TRUE AT2G35795.1 DNAJ heat shock N-terminal domain-containing protein similar to DNAJ heat shock N-terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G09700.1); similar to Os01g0157800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042072.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN65026.1); similar to Os07g0192300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059099.1); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) -0.0352294952372547 -0.334895193549056 0.745915075822279 1 0.829874806294603 15.2157975498365 -0.0352294952372547 0.116718670192832
AT1G52220_at 11.5216456897436 11.644311777139 11.6053710425231 11.3910211858272 11.9076124985964 11.3706515892421 12.2089632764224 11.8840939032293 12.0018710432286 12.2352469051470 12.6573046746096 12.6207167525343 12.3180846491932 12.5801539049206 12.5161992743593 12.6479090562928 11.8508621830987 12.4124673910969 12.1649522679095 0.0771060000635318 0.0748460212986285 0.0774241616080077 0.0748460212986285 0.0771703507869535 0.082855724321763 0.0772537391923259 0.0753308267017975 0.0890245499281498 0.0765951907749092 0.0756880556040416 0.0759995647873996 0.0786212174606534 0.0761100839612767 0.0772761657712702 0.0748460212986285 0.0860462063463917 0.0843020108126366 0.0769262383953035 1 1|0 -|/ 19457576 19458243 19458001.625 19457238 19458366 - gene protein_coding_gene FALSE TRUE AT1G52220.1|AT1G52220.2|AT1G52220.3 similar to TMP14 (THYLAKOID MEMBRANE PHOSPHOPROTEIN OF 14 KDA) [Arabidopsis thaliana] (TAIR:AT2G46820.2); similar to P0460E08.25 [Oryza sativa (japonica cultivar-group)] (GB:BAB61215.1); similar to Os01g0761000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044320.1) 0.0351746238742039 0.334381782242193 0.746288736033825 1 0.829696993541681 23.9839516909362 0.0351746238742039 0.116713787161033
AT1G60710_at 8.49728175706833 8.70447452478786 8.56742786083188 8.59989086303674 8.89205315186791 8.80905783238118 9.41696000679073 9.49709689503317 9.1480517546201 9.47106544263839 9.93113802513905 9.94561363206351 9.2560788096701 9.7485112439745 9.7605662445788 9.52341450394868 9.40718216802998 9.59086675617871 9.5289423951643 0.147027077436544 0.139520282783297 0.145740736959602 0.145252681799773 0.142439815528947 0.144240927496880 0.136439341226372 0.141587067048258 0.144067295809717 0.134313819448383 0.136079821805212 0.135898722340088 0.140224008648998 0.13894152415064 0.13686406569965 0.134313819448383 0.143133546374922 0.139814257235094 0.135424539475258 1 1|0 -|/ 22358748 22359408 22358991.9 22358418 22360426 - gene protein_coding_gene FALSE TRUE AT1G60710.1 ATB2; oxidoreductase Encodes ATB2. similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60690.1); similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT1G60730.1); similar to aldo/keto reductase AKR [Manihot esculenta] (GB:AAX84672.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) -0.024555488375138 -0.334300495419583 0.746347902997264 1 0.829668865315578 18.3870843383525 -0.024555488375138 0.0414222283429891
ATCG00760_at 10.7166771245448 10.4243448017337 10.2416927866506 10.0294309695241 10.9667028404326 9.80645737563517 11.7102829063948 10.501264356266 11.6763639319021 11.7627883318248 12.2661005210058 12.2858988772617 11.9737392613299 12.3054207956544 12.3313610015808 12.2542809818304 11.5519201094057 11.7436180754002 11.5292259767418 0.114383329888035 0.112417123151871 0.117939412983311 0.114016541790057 0.105034746943901 0.11897246009501 0.102912767174719 0.114393879022376 0.106733340109731 0.102176683288495 0.103248479086419 0.102517586452754 0.104461893430101 0.108683106863453 0.102202116735971 0.1052877001119 0.102176683288495 0.103363328985111 0.104195164534644 C C - 79494 79547 79521.182 79489 79602 - gene protein_coding_gene FALSE TRUE ATCG00760.1 encodes a chloroplast ribosomal protein L36, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L36 (rpl36) [Arabidopsis Thaliana] (GB:P62117;GB:P12144); similar to ribosomal protein L36 family protein [Arabidopsis thaliana] (TAIR:AT5G20180.2); similar to ribosomal protein L36 [Nicotiana tomentosiformis] (GB:YP_398898.1); contains InterPro domain Ribosomal protein L36; (InterPro:IPR000473) -0.0720774656984098 -0.334300167195043 0.746348141908583 1 0.829668751751308 22.4221909116926 -0.0720774656984098 0.296646620839665
AT1G26460_at 5.92235335336913 6.02246305131334 5.75922431225663 5.7847285283776 5.30530274853963 5.32143837257998 5.80143911540124 5.68835068220561 4.84020961905473 5.25636116217178 5.16060449441672 5.55063577803968 5.3281073176906 4.67020800818383 5.70374324200077 5.47021779087031 5.62075508016661 4.66157931716537 4.90830598583664 0.23671330288827 0.224579465194516 0.232493135199668 0.224343539239841 0.222612852446221 0.230508997713507 0.220730708958063 0.226391482083904 0.238938387259351 0.220730708958063 0.229202693117283 0.229240449584535 0.233951888062437 0.226701831782101 0.220730708958063 0.224211726523616 0.225502066320885 0.223311902432008 0.225949357091837 1 1 + 9153397 9154356 9153940.182 9151719 9154727 + gene protein_coding_gene FALSE TRUE AT1G26460.1 pentatricopeptide (PPR) repeat-containing protein similar to MEE40 (maternal effect embryo arrest 40), binding [Arabidopsis thaliana] (TAIR:AT3G53700.1); similar to Os07g0599000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060186.1); similar to putative membrane-associated protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58263.1); similar to Os07g0249100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059290.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940) -0.0234361352940892 -0.33423636770874 0.7463945814582 1 0.82964667946333 10.8368410042993 -0.0234361352940892 0.0266536592920785
AT3G56010_at 8.8919389665337 9.83211265093565 8.80646576967702 9.52181983855107 10.0878500663757 9.4879467500048 10.1851682459673 10.3922923785988 9.49766982495552 9.5495320983585 9.66764661762397 9.89259368079563 9.4308763828616 9.5346764044042 9.53399102371472 9.82225356143675 9.27304644655866 9.8049975411243 9.11340588302511 0.174341898796682 0.170975684140268 0.186051109094231 0.174469538981682 0.167832522106892 0.179426400416849 0.185666558510828 0.171258173061178 0.183137649035407 0.170845141687324 0.178315860702361 0.168251291934749 0.169979738994250 0.171757770154373 0.179329163359709 0.167142481642486 0.192741079718095 0.17172569681272 0.179708742698493 3 0|3 /|+ 20800091 20800607 20800356.5 20799649 20800903 + gene protein_coding_gene FALSE TRUE AT3G56010.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94028.1) -0.058108257910717 -0.33422063344946 0.746406034569863 1 0.829641236614825 19.1541390713778 -0.058108257910717 0.232076717930602
AT3G13062_at 10.7860888967291 10.7625570946212 11.3521491954623 11.3572665836716 11.4155124123977 11.2812597896508 10.9350985370885 10.8429024593526 10.6288218636724 10.8824132177043 10.0926915764113 9.57354922921095 10.6703885772234 10.4551484957820 9.23557212541607 10.8046540714771 10.9397639195766 10.4042017459461 11.0054155254524 0.0925266513309848 0.0904898668047965 0.0932831351016976 0.092256530780756 0.0930743137256011 0.0941051289822002 0.093576312728854 0.0946568054987298 0.0924615055718138 0.0909290392109145 0.0912669349100424 0.0971964751772843 0.0904898668047965 0.0904898668047965 0.0937757794623533 0.0904898668047965 0.0934083988482355 0.0928057352758294 0.0928210738607743 3 3 + 4185940 4186770 4186499.182 4184576 4187460 + gene protein_coding_gene FALSE TRUE AT3G13062.1|AT3G13062.2|AT3G13062.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55960.1); similar to Lipid-binding START [Medicago truncatula] (GB:ABE91086.1); contains InterPro domain Lipid-binding START; (InterPro:IPR002913) -0.0235010348157465 -0.333529845793529 0.746908930768055 1 0.829402522533513 21.6470442477418 -0.0235010348157465 0.0284903992246193
AT4G00090_at 6.72484446881049 6.77763624064684 6.31594842570721 6.77737453365895 6.71699004535592 6.04977582699153 6.36314821097792 6.26721956235523 5.25762409215896 5.63296008961108 5.1722521385744 5.7854404922331 5.68576718385058 5.30611277985095 6.00881341323369 5.37459394598089 5.7320463762546 5.35006592364654 5.32292683970951 0.203930045334582 0.191469197893726 0.1933049691455 0.200779187428830 0.194287519962641 0.198631631184104 0.190868236047524 0.196512921712610 0.198193565560748 0.202234366848115 0.190590861676979 0.201433782995418 0.191611443156238 0.2035166571215 0.196250500671148 0.195219186001872 0.197331064169679 0.1911948660763 0.192225408591165 4 4|0 +|/ 35480 36407 36030.4 34095 36880 + gene protein_coding_gene FALSE TRUE AT4G00090.1 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT3G42660.1); similar to Os03g0858400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051961.1); similar to F6N15.8-like protein [Man (GB:AAK53810.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0395964725536813 0.333048776722217 0.747259226603397 1 0.829236564116437 11.9773122670778 0.0395964725536813 0.141659607472747
AT4G10750_at 6.33138605286949 6.6552318669678 5.99481301920961 6.31342105153201 6.2226680876083 6.37746503824462 6.43527394049265 6.58889505138618 6.09210957190271 6.05519932003805 6.52594514222282 6.43372010832557 6.09200264325257 6.38672280935308 6.80684944092655 6.53390451439562 6.46927083307904 5.76186269314326 5.97384952428305 0.16440255646465 0.162137109545803 0.165783044787452 0.159538241595653 0.158924324102581 0.155050421203542 0.158487316105633 0.162453188821743 0.166038955779066 0.172951441530871 0.163265320936537 0.157511872246756 0.163746828335046 0.160409825627357 0.162052719573830 0.157967202881669 0.160239908010368 0.161382530380487 0.169903498099952 4 4 + 6619245 6619643 6619477.818 6618672 6619935 + gene protein_coding_gene FALSE TRUE AT4G10750.1 HpcH/HpaI aldolase family protein similar to ALL1 (ALDOLASE LIKE), carbon-carbon lyase [Arabidopsis thaliana] (TAIR:AT4G24080.1); similar to Os09g0529900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063745.1); similar to putative aldolase [Aurantimonas sp. SI85-9A1] (GB:ZP_01226969.1); similar to HpcH/HpaI aldolase [Chromohalobacter salexigens DSM 3043] (GB:YP_572133.1); contains InterPro domain HpcH/HpaI aldolase; (InterPro:IPR005000) 0.0301468527828221 0.332913545514169 0.747357707888953 1 0.829189954214288 12.5732297194531 0.0301468527828221 0.0872080010080358
AT2G24500_at 7.80959099636213 7.93298415158603 7.78552815807141 7.88745923760706 8.10690350320459 7.54959857766947 7.55571391408235 7.92626009751541 6.59651785494221 6.36996655626822 5.8787663740509 6.75064082489299 6.24034716851145 6.3585651028178 6.66406227122534 6.48721132953762 6.70424267673017 6.30978431834846 6.5965744230378 0.240351714472323 0.237770774090035 0.238418232351656 0.237818137496874 0.240326002034157 0.244881998716916 0.237770774090035 0.24392091873454 0.249399702228486 0.240860451786944 0.240814269483787 0.237770774090035 0.240264897800663 0.237770774090035 0.251305499453489 0.237770774090035 0.239514464013470 0.241267569326248 0.238251325032318 2 2 - 10408346 10409123 10408654.182 10408115 10410014 - gene protein_coding_gene FALSE TRUE AT2G24500.1 FZF; transcription factor Encodes a C2H2 zinc finger protein FZF. similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT4G31420.1); similar to Os06g0693500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058435.1); similar to putative C2H2-type zinc finger protein [Brassica rapa subsp. pekinensis] (GB:AAO32058.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.0352910119500434 -0.331527492616618 0.748367374301349 1 0.828713287005569 14.2918658893525 -0.0352910119500434 0.119082367140136
AT4G20960_at 6.45645063562174 6.73514785212278 6.26421387943017 6.23685391049364 6.51736401787683 6.24702117320126 6.84455143685366 6.38168101022844 5.27320925209031 6.01530028898369 5.55203060232503 6.44667992637522 5.32466155442152 5.37623112628947 6.72252607040981 6.10721849227305 6.10827014043965 6.27787089292996 6.0117308365276 0.25312437907594 0.25205849976894 0.253449691965056 0.251743014714968 0.248925726805292 0.252695405065440 0.249983958230921 0.267417119269345 0.269664211695238 0.255504684487121 0.252118764788585 0.252172369964113 0.261829029425694 0.252553139533023 0.253228695480173 0.251283535341680 0.247562388909218 0.255150636492746 0.258240969673949 4 4 + 11212970 11213410 11213125.182 11211957 11213655 + gene protein_coding_gene FALSE TRUE AT4G20960.1 cytidine/deoxycytidylate deaminase family protein similar to cytidine/deoxycytidylate deaminase family protein [Arabidopsis thaliana] (TAIR:AT3G47390.1); similar to Os03g0117200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048766.1); similar to Os04g0177400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052169.1); similar to riboflavin biosynthesis protein [Nostoc sp. PCC 7120] (GB:NP_484126.1); contains InterPro domain CMP/dCMP deaminase, zinc-binding; (InterPro:IPR002125); contains InterPro domain Riboflavin biosynthesis protein RibD; (InterPro:IPR004794) -0.0327025901535443 -0.330434792083241 0.74916371044252 1 0.828338867883574 12.3385019360870 -0.0327025901535443 0.104659447818879
AT3G10140_at 5.7601554638028 5.81654571219749 5.59365219118281 5.05416572258715 6.34980281615333 5.86399496932429 5.30513900263399 5.5923044524846 4.87937037983107 5.10402525226018 4.99324062996014 5.01743093194158 4.76583032912096 5.04957703092771 5.41035216418956 5.0239681417776 4.11587070195456 4.94507955781084 4.82449771644411 0.264331445893410 0.258654351699795 0.258654351699795 0.269301018384863 0.271806726770683 0.267754737890715 0.268714927156527 0.263604965410286 0.262263652032047 0.259474685150236 0.258654351699795 0.263879950818784 0.265344355157003 0.265900717276826 0.258934075302719 0.261198193986405 0.264256055444953 0.258654351699795 0.263699575685913 3 3 + 3136285 3137042 3136631.2 3134878 3137422 + gene protein_coding_gene FALSE TRUE AT3G10140.1 recA family protein Identical to DNA repair protein recA homolog 2, mitochondrial precursor (Recombinase A homolog 2) [Arabidopsis Thaliana] (GB:Q8RY99;GB:Q9SR78); similar to recA family protein [Arabidopsis thaliana] (TAIR:AT2G19490.1); similar to Os01g0901200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045109.1); similar to Os11g0302700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067734.1); similar to putative RecA protein [Oryza sativa (japonica cultivar-group)] (GB:BAB90525.1); contains InterPro domain RecA bacterial DNA recombination; (InterPro:IPR001553); contains InterPro domain RecA; (InterPro:IPR013765) 0.0380360017403772 0.329607171897122 0.749767073338283 1 0.828056080077634 10.5925366090319 0.0380360017403772 0.135458671527389
AT4G02770_at 13.2431234157475 13.4223221937023 13.1864647882464 13.2506638624554 13.2556874400158 13.1813696041079 13.5596656360589 13.7101655212770 14.0547258174308 14.0387739486394 14.3197523409883 14.3792005738449 14.0158313395209 14.2272137139567 14.2339045276888 14.2782143143897 13.9101738517914 14.3249398205461 13.8903168603573 0.072860904933553 0.0707422558294992 0.0765822123073481 0.0715125577109304 0.0707130421326796 0.0728392642311362 0.070524565405252 0.0707978424596038 0.0844051411737083 0.0706460081453706 0.071815691150454 0.0713177691873064 0.0704021934568017 0.0717952867805062 0.0728752527226753 0.0704524529547132 0.076168626600441 0.0709428921035263 0.0704021934568017 4 4 - 1229389 1229787 1229546.364 1229111 1229945 - gene protein_coding_gene FALSE TRUE AT4G02770.1 PSAD-1 (photosystem I subunit D-1) Encodes a protein predicted by sequence similarity with spinach PsaD to be photosystem I reaction center subunit II (PsaD1) Identical to Photosystem I reaction center subunit II-1, chloroplast precursor (Photosystem I 20 kDa subunit 1) (PSI-D1) (psaD1) [Arabidopsis Thaliana] (GB:Q9S7H1;GB:Q8L9B6); similar to PSAD-2 (photosystem I subunit D-2) [Arabidopsis thaliana] (TAIR:AT1G03130.1); similar to Photosystem I reaction center subunit II, chloroplast precursor (Photosystem I 20 kDa subunit) (PSI-D) (GB:P12353); similar to unnamed protein product [Spinacia oleracea] (GB:CAA68728.1); similar to unnamed protein product [Spinacia oleracea] (GB:CAA32182.1); contains InterPro domain Photosystem I protein PsaD; (InterPro:IPR003685) -0.0243622498958427 -0.328594382167969 0.750505678455188 1 0.827710960856007 27.4540624839431 -0.0243622498958427 0.0439187641521601
AT3G29290_at 5.96435194664637 6.01428501773234 6.1399013401983 5.75937334233528 6.37225918203511 5.87474176877531 6.82798372149249 6.24128971805859 5.74485322886529 6.25388787802007 6.1255056601698 6.38736159044054 6.02593222457764 6.02786089840675 5.97482825868425 6.99010323587293 6.32303779481344 5.95103128186018 6.24435997921862 0.215132658497769 0.209931538360438 0.200267635324056 0.209037721639582 0.202707969544941 0.206293034610504 0.203775964258127 0.209277106916692 0.213788194925461 0.198969393558694 0.204147905011156 0.203828909639264 0.195402267988131 0.214335128553270 0.201267886415593 0.207768963321878 0.207807551615905 0.200000711657145 0.198193715411197 3 3 + 11240683 11241308 11240910.545 11239348 11241524 + gene protein_coding_gene FALSE TRUE AT3G29290.1 EMB2076 (EMBRYO DEFECTIVE 2076); binding similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G02860.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94602.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.040367384955625 -0.328304845130812 0.750716881361323 1 0.827612487876973 12.3026439113948 -0.040367384955625 0.148769479094326
AT2G40060_at 9.02407935138029 9.19248750093963 9.32073075950167 9.10650506112592 9.43893335717554 9.35256361112788 9.5154916175419 9.38248114327156 9.72994547008258 9.63872542558173 9.7871483059377 9.8223987134037 9.7935714832473 9.67113194247771 9.65568989797958 9.6536914115263 9.48811914878441 9.82538445201038 9.69339352823982 0.110659956617150 0.11151689116342 0.112877906795838 0.120815610102804 0.112982602897508 0.119983743709177 0.112828334438239 0.114708928431112 0.11965363129811 0.116912574169359 0.115861587471970 0.107225742904822 0.108357753934427 0.110390524279673 0.117756936310397 0.111770949790109 0.114935624322803 0.110746559805772 0.112549682367921 2 2 + 16733831 16735044 16734743.455 16733562 16735263 + gene protein_coding_gene FALSE TRUE AT2G40060.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G51890.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE83515.1); contains InterPro domain Clathrin light chain; (InterPro:IPR000996) 0.0254177027011291 0.328250251871782 0.750756706921862 1 0.827593929904344 18.9914074139525 0.0254177027011291 0.0545617709663057
AT3G58600_at 8.43391768508847 8.5490833101348 8.35595074086673 8.21126740902777 8.41258608722432 8.07717445964778 7.38873461171299 7.69521921034717 7.8754502769373 7.53943214902451 7.57391962660117 8.01152149293834 7.27502919744602 7.58539729874839 7.27824361252182 7.0514517247117 6.58480043027594 7.30240464875422 7.14996253699172 0.242271021730103 0.238618191659522 0.240301415726187 0.241661848626612 0.233861299655497 0.236659002191674 0.240533068237678 0.234864420055538 0.240003926266657 0.238791858397185 0.235041664858556 0.231563385793717 0.230193777993634 0.238769619865373 0.232910802220101 0.232456024302141 0.249839677378114 0.230193777993634 0.236570375625358 3 0|3 /|- 21679723 21680400 21680137.1 21679492 21682144 - gene protein_coding_gene FALSE TRUE AT3G58600.1 similar to ATNAP4 (ARABIDOPSIS THALIANA NON-INTRINSIC ABC PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT1G03900.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61234.1); contains InterPro domain Adaptin ear-binding coat-associated protein 1 NECAP-1; (InterPro:IPR012466) 0.0293684931096536 0.328140948621675 0.750836445568238 1 0.827556783303725 15.5677221850817 0.0293684931096536 0.0848903521247698
AT1G43850_at 8.24437303728891 8.0372178001839 8.19821601831275 7.72006479531425 8.28603421528334 8.28211147205044 8.16426013570221 7.9933803342861 7.90083798329697 7.79894945988704 7.89375493204609 7.97987521806852 8.05715246580795 7.88695187013527 8.0414779897496 8.16736936349323 7.9288125677587 8.03643022629521 8.14718749590387 0.140197491324216 0.134222182185886 0.142309121370931 0.135489022194986 0.134638262614941 0.144198667742928 0.132041871258424 0.143896721829603 0.153211723234624 0.141410825212190 0.135575824383479 0.141151366409547 0.13514268522078 0.134155912873505 0.134874474355705 0.133178232369617 0.152014002086944 0.146690920089256 0.133769127337644 1 1 + 16623458 16623950 16623642 16619592 16624489 + gene protein_coding_gene FALSE TRUE AT1G43850.1 SEU (SEUSS); transcription cofactor transcriptional co-regulator of AGAMOUS, functions with LEUNIG Identical to Transcriptional corepressor SEUSS (SEU) [Arabidopsis Thaliana] (GB:Q8W234;GB:Q8GXE8;GB:Q9MAR3); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62090.2); similar to SEU3A protein [Antirrhinum majus] (GB:CAF18249.1); similar to Os11g0207000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067462.1); similar to Os11g0207100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067463.1); contains InterPro domain LIM binding protein; (InterPro:IPR002691) 0.0308926155908065 0.328056423385465 0.75089811038375 1 0.8275280657408 16.0896920888187 0.0308926155908065 0.0949054841747846
AT3G10740_at 8.83382644367652 9.30946717109201 9.14991805424232 9.03030652870927 9.93238504803866 9.3011282417881 9.1241319860924 9.12491933318628 8.90697818750667 9.24348517180505 8.71171802639597 8.57839679479926 9.4964574014728 8.99961097387744 8.35866856399279 9.2603490988979 8.94621533797361 8.98350756197898 9.59645052276742 0.17192471855616 0.166576632972887 0.17604889490349 0.167012905384426 0.174437228029817 0.190585796544819 0.171406227102235 0.166576632972887 0.183374769474076 0.174243086190218 0.174234712463941 0.17402790904836 0.170719507034738 0.183409890176775 0.174990574346675 0.169185888246909 0.180553774907170 0.173763215059849 0.170915007684555 3 3 - 3361047 3361918 3361441 3360893 3365419 - gene protein_coding_gene FALSE TRUE AT3G10740.1 ASD1 (ALPHA-L-ARABINOFURANOSIDASE); hydrolase, acting on glycosyl bonds Encodes a bifunctional alpha-l-arabinofuranosidase/beta-d-xylosidase that belongs to family 51 of glycoside hydrolases. It may be involved in cell wall modification. similar to glycosyl hydrolase family protein 51 [Arabidopsis thaliana] (TAIR:AT5G26120.1); similar to alpha-L-arabinofuranosidase [Prunus persica] (GB:ABF22680.3); similar to Galactose-binding like; Alpha-L-arabinofuranosidase, C-terminal [Medicago truncatula] (GB:ABE79850.1); similar to alpha-L-arabinofuranosidase [Malus x domestica] (GB:AAP97437.1); contains InterPro domain Carbohydrate-binding, CenC-like; (InterPro:IPR003305); contains InterPro domain Alpha-L-arabinofuranosidase, C-terminal; (InterPro:IPR010720); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) -0.0383787947100029 -0.327985687210288 0.75094971693501 1 0.827504038563376 18.3086787328282 -0.0383787947100029 0.138338429850762
AT3G06130_at 5.44702851551278 5.15898037008412 4.78898178959393 4.54811192459373 5.23703840201235 5.10773201858644 5.2031353521353 5.41571292318365 6.16821025751575 5.48177160052079 6.46089985051328 6.63462332865657 6.23058813393408 6.29111151786852 6.21802425975463 6.35656520189653 5.71502506430055 6.07483154477079 5.76585930815617 0.213903106639039 0.206306936126914 0.217431957431527 0.213833629401170 0.216253297665317 0.214266264265251 0.208540207064535 0.218892705846551 0.207084723055901 0.209441977482803 0.210049820116256 0.212731491772469 0.211551587368644 0.206519434129986 0.211571816744160 0.209057923495609 0.212320269977177 0.211868502118942 0.21163248501854 3 3 - 1853082 1853623 1853328.091 1852895 1855067 - gene protein_coding_gene FALSE TRUE AT3G06130.1 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G19090.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71268.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.0283399837243082 0.327853184323982 0.751046389801271 1 0.827459044462885 11.1398346626842 0.0283399837243082 0.0779513568653034
AT1G73750_at 10.1295299185282 9.99524284610208 10.4804864603087 10.4393571862513 10.7020329051535 10.4901047361495 10.6359588962714 10.6844253966709 10.3917361846653 10.7132672872315 10.3388121545525 9.8040739059511 10.5679471765725 10.6110984505292 9.7740292305224 10.6892932783278 10.8094526851124 10.5806265480849 10.4396532775684 0.0664714285124118 0.0676454797532326 0.0719453079694861 0.0688085195951809 0.0677911170597371 0.0707116576324001 0.0688463405453043 0.0700428311903502 0.07456371463977 0.066204577657587 0.066204577657587 0.0672335074932094 0.0668585372323761 0.0692096140960479 0.0727575816421448 0.066204577657587 0.0745625998560814 0.0688991701490256 0.0671180853206555 1 1|0 +|/ 27741585 27742347 27741900.778 27740291 27742740 + gene protein_coding_gene FALSE TRUE AT1G73750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G15060.1); similar to Os01g0692600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043943.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD82496.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379) 0.0243685765620452 0.327585058200764 0.751242026306228 1 0.827368050807217 20.9005434241103 0.0243685765620452 0.0447898051859858
AT1G59700_at 7.9520067937308 8.81316116447546 9.06693227743083 9.17576986306192 9.3952069891311 8.82042986101367 9.91027346744394 9.8207059398177 8.5734284052589 9.00563219146058 8.67198692178074 8.18972734810736 8.91447716547018 9.1800457824278 7.96262618682582 9.28328367266706 8.97706996818834 8.95011498777572 8.41230026856378 0.148465004533308 0.141588622733252 0.14749787217301 0.144811743234958 0.148733591180525 0.146899528241896 0.144795884056623 0.143530239774440 0.148146397718270 0.150263692549502 0.144768373673422 0.149312938828784 0.141493134623051 0.144367888954477 0.154327469049161 0.138114477344573 0.151610783435414 0.140292585381199 0.149987379829683 1 1|0 +|/ 21940321 21941403 21941074.9 21939961 21941624 + gene protein_coding_gene FALSE TRUE AT1G59700.1 ATGSTU16 (Arabidopsis thaliana Glutathione S-transferase (class tau) 16); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). similar to ATGSTU15 (Arabidopsis thaliana Glutathione S-transferase (class tau) 15), glutathione transferase [Arabidopsis thaliana] (TAIR:AT1G59670.1); similar to glutathione S-transferase [Gossypium hirsutum] (GB:AAF29773.1); similar to glutathione S-transferase GST 5 [Glycine max] (GB:AAG34795.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) 0.0464637276766811 0.327322525394503 0.75143360008118 1 0.827279025549492 17.8342875241381 0.0464637276766811 0.180825443367181
AT4G12650_at 8.17454676512653 8.61874355215872 7.82292502338622 7.9529562683 8.14480203722478 7.57944157716732 8.46880590091913 8.70241488673917 8.22683978232894 8.1280334353862 8.93293328354394 9.2160775757882 8.8043743906444 8.61781656088739 8.9339736256912 8.45018880659013 8.08831113629493 8.3607361553598 8.04704496782275 0.159145785074134 0.161184963121908 0.160944638458242 0.155219260102809 0.157413897557559 0.175319106340733 0.157735802382898 0.157361042045345 0.184237982390748 0.166358792664670 0.160201342744704 0.156045461267715 0.158850911387153 0.167758059279813 0.170743667509929 0.162592427534531 0.173919273061857 0.159748963653323 0.155974526494030 4 4 - 7468254 7468779 7468487.818 7467975 7469787 - gene protein_coding_gene FALSE TRUE AT4G12650.1 endomembrane protein 70, putative similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT5G35160.1); similar to endosomal protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD01346.1); similar to Os02g0722300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047965.1); similar to Os08g0496900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062138.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) -0.0372589181894702 -0.327153861198510 0.751556686247414 1 0.827221867923658 16.5878415865591 -0.0372589181894702 0.132748214448049
AT3G61600_at 9.24394226561373 9.31330344113845 9.10940423250592 9.22482027914242 9.68993725937667 9.48207117186 9.00922073876031 9.26859124858025 9.54141474019593 9.264962198265 9.3840699352055 9.30481629302283 9.3594414146228 9.47442341868619 9.02939200540271 9.49406975609667 8.84996247704704 9.17299203030505 9.31615323408038 0.091137637901098 0.090161011143999 0.0945324442460467 0.098455033462621 0.0955560662251355 0.0942100232617856 0.09558099752256 0.0921601404275334 0.0991061605506316 0.090161011143999 0.0917064319150747 0.0907579806969632 0.095438420813143 0.0918535134198417 0.0909729501118445 0.090161011143999 0.102723404526545 0.0963730421071874 0.090161011143999 3 3 + 22808412 22808826 22808603.727 22806554 22809295 + gene protein_coding_gene FALSE TRUE AT3G61600.1|AT3G61600.2 ATPOB1 (Arabidopsis thaliana POZ/BTB containing-protein 1); protein binding POZ/BTB containing-protein AtPOB1 similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46260.1); similar to putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61652.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAT40121.1); similar to Os06g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057726.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069)|similar to BTB/POZ domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G46260.1); similar to putative GAMYB-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD61652.1); similar to GAMYB-binding protein [Hordeum vulgare subsp. vulgare] (GB:AAT40121.1); similar to Os06g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057726.1); contains InterPro domain BTB; (InterPro:IPR000210); contains InterPro domain BTB/POZ; (InterPro:IPR013069) 0.0261315021581121 0.326323283813091 0.752162926592809 1 0.826940816671328 18.6090726498617 0.0261315021581121 0.0620620467053741
AT1G80940_at 6.37059097754084 6.33025000784886 6.58783715055222 6.6357411998785 6.80888672429691 6.76973209700447 6.7333234628414 6.7629138775439 6.59342567144419 6.72474336306621 6.3681780576401 6.31804915484644 6.57514493499337 6.7846628063958 5.99066462519114 6.66593399337466 6.85131257820545 6.52276573611532 6.53079200079046 0.211837359606789 0.201374632168191 0.207113264191326 0.203360878344276 0.198735942737195 0.215153624512996 0.202816600902925 0.214543002825217 0.224290548042199 0.205275983055161 0.202492314856522 0.205401843204445 0.200861146718957 0.216775482975262 0.206840733253705 0.205202245474922 0.214285588818955 0.212397335487696 0.199439535626569 1 1 + 30415923 30416692 30416389.273 30415593 30417181 + gene protein_coding_gene FALSE TRUE AT1G80940.1|AT1G80940.2 similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14272.1); contains domain MAPKK-RELATED SERINE/THREONINE PROTEIN KINASES (PTHR22986); contains domain SERINE/THREONINE PROTEIN KINASE (PTHR22986:SF13)|similar to predicted protein [Populus alba x Populus tremula] (GB:AAR14272.1) 0.0222741761171386 0.325994269015019 0.752403125490172 1 0.826829676754998 13.1878641026612 0.0222741761171386 0.0137693988602529
AT3G60030_at 8.6387607996517 8.89299334111466 8.72441941398275 8.74388723741067 9.31574164080438 9.24904731345833 9.21283571114816 9.1717718573339 8.88064343433305 9.12949515901178 9.3744812214565 9.10542031792424 9.22114131425432 9.03221913441864 8.60517104621191 8.90637893408659 8.7831108935251 8.68185020011258 9.1136610655461 0.127034486781228 0.122468938755219 0.129731499778440 0.128855679059158 0.122663138205760 0.122664591457814 0.121794308969705 0.124262456481216 0.137218944481424 0.123088860307372 0.124340614017909 0.121182883202395 0.121034686110552 0.125522134498961 0.137309052036388 0.12401826225462 0.132931725203942 0.143658136663553 0.124515392791763 3 3 - 22176863 22177486 22177161.727 22176631 22180549 - gene protein_coding_gene FALSE TRUE AT3G60030.1 SPL12 (SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE 12); transcription factor Identical to Squamosa promoter-binding-like protein 12 (SPL12) [Arabidopsis Thaliana] (GB:Q9S7P5); similar to SPL1 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 1), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G47070.1); similar to Os03g0833300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051808.1); similar to SBP [Medicago truncatula] (GB:ABE82410.1); contains InterPro domain SBP; (InterPro:IPR004333); contains InterPro domain Ankyrin; (InterPro:IPR002110) -0.0241807230564846 -0.32333088283913 0.754348589840177 1 0.825934013644942 17.9961762572193 -0.0241807230564846 0.0461597339521436
AT2G37760_at 8.02377344339383 8.15697862554663 9.47374449925455 9.4755083276005 8.58316285952893 8.18584541100483 9.15156812398806 9.02375741795449 7.3812537536243 8.27421772584703 6.70983564520846 4.10572545053318 7.61170359609878 7.89663964529573 5.72554570827849 8.16772035767329 8.72679533817042 8.1740206479078 6.61993401638447 0.171407768801780 0.17140724429047 0.177733556645059 0.178342996297394 0.17140724429047 0.171630961535493 0.172773446752825 0.176063425063068 0.197262520164948 0.171589142942397 0.188081624633159 0.186151401591209 0.182780001540618 0.172284286119291 0.194422213482218 0.17140724429047 0.176279119172807 0.177783833549612 0.210653217217657 2 2|0 +|/ 15839979 15840769 15840389.222 15838932 15840997 + gene protein_coding_gene FALSE TRUE AT2G37760.1|AT2G37760.2|AT2G37760.3|AT2G37760.4 aldo/keto reductase family protein|oxidoreductase similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT2G37790.1); similar to Aldo/keto reductase [Medicago truncatula] (GB:ABE82917.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395)|similar to oxidoreductase [Arabidopsis thaliana] (TAIR:AT2G37770.2); similar to aldo/keto reductase family protein [Arabidopsis thaliana] (TAIR:AT2G37790.1); similar to Aldo/keto reductase [Medicago truncatula] (GB:ABE82917.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.0275795024934764 0.322444790292839 0.754996245475791 1 0.825637618187852 16.0417340704995 0.0275795024934764 0.0758175892406768
AT1G76200_at 10.9112642870693 10.9841906723753 10.9255300630447 11.0508168054975 10.9377438541051 10.7587997531085 10.9168650670476 11.1071629143590 11.3344690029529 11.3803113437330 11.3972929547231 11.4495491702607 11.1822716895013 11.4187043191684 11.4326659069275 11.2121394739459 11.0545247471376 11.3764566628468 11.1945401237325 0.0688155524879805 0.0653507528389833 0.0684443247317342 0.0678120787803081 0.0655447892990472 0.0677324919501411 0.0658233670697716 0.0664248151216073 0.0667491862326538 0.0642765891651557 0.0648805415977845 0.0650923204555858 0.0653926521198479 0.0671355475557451 0.0661564538065097 0.0656134061902768 0.0684299280084899 0.0667077260358664 0.0642765891651557 1 1|0 +|/ 28598257 28598850 28598532.2 28598144 28599636 + gene protein_coding_gene FALSE TRUE AT1G76200.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE89059.1) -0.0246521620913582 -0.322280441365929 0.75511639257669 1 0.825582731032424 22.2583253965942 -0.0246521620913582 0.0516994218927364
AT2G30460_at 4.80645280689141 5.40856436652436 5.304446957947 4.65760794766578 6.04179485902359 4.66463750581225 7.04101259856189 6.50955853450435 4.41672308609518 5.35446897649619 5.99509088065593 5.95062927045952 5.80680593011529 5.55858373250819 5.7841309332819 6.00679289879682 5.16768939601976 5.34455950778974 5.42870018207017 0.276776465314426 0.272050278892842 0.287479029627091 0.285110374046846 0.271646827120748 0.299163856070287 0.279572172230185 0.271646827120748 0.292856500295794 0.278101079020289 0.282378079528186 0.274805522119721 0.273522169678963 0.277749901697422 0.278718423789799 0.274404897557806 0.303213733372475 0.288360681178388 0.277565522351477 2 2|0 -|/ 12983799 12985484 12984510.111 12983526 12985566 - gene protein_coding_gene FALSE TRUE AT2G30460.1 similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G06890.2); similar to Os05g0168700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054756.1); similar to Os01g0167500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042121.1); similar to putative glucose-6-phosphate/phosphate-tranlocat or [Oryza sativa] (GB:BAB41206.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) -0.069560344262732 -0.321564986994501 0.755639506630153 1 0.825344110329925 10.9384674805783 -0.069560344262732 0.297731726898196
AT4G33250_at 10.2520469187431 10.3578165133357 10.0381898705203 10.0397002313135 10.3900074972412 10.3912507223840 10.1765910051525 10.2545020177803 9.8832754485036 9.64705486846897 9.72021031837907 9.81636051515404 9.53630067437416 9.7125981711508 10.1048777291465 9.65005079339533 9.5821503619094 9.71639162158057 9.65668790850871 0.0932640168817741 0.0914995757520476 0.0930328894610273 0.0938450016710616 0.0927596933025168 0.09303052372347 0.0930446111935574 0.0928857372770049 0.0989310618495252 0.091506047098018 0.094954356473527 0.0914995757520476 0.0990888962622677 0.0975268395259296 0.0916558965977875 0.0930323460796516 0.0958933251668665 0.0944877740750215 0.0933059292170859 4 4|0 -|/ 16039132 16040514 16039985.875 16038871 16040715 - gene protein_coding_gene FALSE TRUE AT4G33250.1 EIF3K (eukaryotic translation initiation factor 3K) Encodes initiation factor 3k (EIF3k). Identical to Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) (TIF3K1) [Arabidopsis Thaliana] (GB:Q9SZA3); similar to Eukaryotic translation initiation factor 3 subunit 12 (eIF-3 p25) (eIF3k) (GB:Q94HF1); similar to Os03g0182700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049175.1); contains InterPro domain Eukaryotic translation initiation factor 3 subunit 12; (InterPro:IPR009374); contains InterPro domain SAC3/GANP; (InterPro:IPR005062) -0.0222952927061659 -0.320988207959475 0.75606132323646 1 0.825152117205134 19.9669498962071 -0.0222952927061659 0.0227362216756106
AT3G05350_at 9.12641585557778 9.0136235846678 9.2859007489094 9.15525300352906 9.44532962721444 9.08147765145213 9.6122119293433 9.44627252556238 9.41999808616359 9.69199575628785 9.38208359165547 9.68352436411003 9.4201295638687 9.67680195708912 9.7663027897378 9.81948121283343 9.47164849887453 9.68679462558734 9.3910373866405 0.104773658835214 0.102752067941757 0.108391095388102 0.103477364106749 0.106806437117430 0.107603764240909 0.104731874969069 0.106195355554715 0.103978965254953 0.101775762206943 0.101137078583016 0.103272662670289 0.101137078583016 0.101434178101086 0.102318116134726 0.102501315142483 0.109037596671283 0.101552241061851 0.102665071220843 3 3|0 -|/ 1527144 1528271 1527796.375 1526969 1530263 - gene protein_coding_gene FALSE TRUE AT3G05350.1 aminopeptidase similar to ATAPP1 (aminopeptidase P1) [Arabidopsis thaliana] (TAIR:AT4G36760.1); similar to Os07g0205700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059149.1); similar to Peptidase M24; Peptidase aspartic, active site [Medicago truncatula] (GB:ABE90680.1); contains InterPro domain Peptidase M24; (InterPro:IPR000994) 0.0273473498803405 0.320427351487737 0.756471577973775 1 0.824965746274515 18.8279887333655 0.0273473498803405 0.0753761983571128
AT1G11660_at 6.83632764507875 6.88217255723025 7.06348058838816 6.57101983107012 6.38132199794184 6.53595261281369 6.60292463530063 6.7921152603443 6.43810872211195 6.63832328348868 6.77124703081986 7.18629175662532 6.39483467758872 6.73764072340333 7.05455895610055 6.74238672511117 6.49379574576115 6.00304444349278 6.70253738215456 0.174503774329890 0.174503774329890 0.184885350149825 0.177684882610583 0.176675566735422 0.188394258883763 0.175025093692488 0.174503774329890 0.186420017525833 0.186447417593669 0.179362140745489 0.178309115010504 0.178994428840399 0.179197530170696 0.17551414124288 0.176258789441319 0.189493211622595 0.185740358012038 0.180866588702456 1 1|0 +|/ 3923337 3924058 3923811.667 3921056 3924555 + gene protein_coding_gene FALSE TRUE AT1G11660.1|AT1G11660.2 heat shock protein, putative|ATP binding similar to heat shock protein 70, putative / HSP70, putative [Arabidopsis thaliana] (TAIR:AT1G79920.2); similar to HSP91 (Heat shock protein 91) [Arabidopsis thaliana] (TAIR:AT1G79930.1); similar to Os06g0679800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058371.1); similar to Os01g0180800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042210.1); similar to hypothetical protein UM05918.1 [Ustilago maydis 521] (GB:XP_762065.1); contains InterPro domain Heat shock protein Hsp70; (InterPro:IPR001023); contains InterPro domain Heat shock protein 70; (InterPro:IPR013126) -0.0302280277452835 -0.320082455889462 0.756723902350639 1 0.824851296183036 13.3411467926616 -0.0302280277452835 0.0954664445435993
AT2G47410_at 8.05398364094302 7.99269102820412 8.27164581621734 8.14164356007315 7.99906418985153 8.03806165322343 7.99341210876928 7.60612546212187 7.78892506564672 8.02703476936056 7.72842441241804 7.8757094909219 7.6387926101568 7.69137191381884 7.54767362111146 7.72987080971597 8.07336462145198 7.98857553075875 7.97931725679365 0.148586321539969 0.146108255961924 0.138178476232135 0.139496994241669 0.138487006662509 0.139609167085765 0.138829938165191 0.147201626861222 0.149048152572957 0.143874278492488 0.143926266052742 0.140492503041754 0.151330828989958 0.145729567772737 0.142318814785480 0.138183253977692 0.145424265698957 0.137638767432833 0.143290865600446 2 2|0 +|/ 19463173 19463954 19463464.2 19455377 19464335 + gene protein_coding_gene FALSE TRUE AT2G47410.1 nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT5G49430.1); similar to Os03g0306200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049887.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF95528.1); similar to Bromodomain; WD40-like [Medicago truncatula] (GB:ABD32322.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Bromodomain; (InterPro:IPR001487); contains InterPro domain Rho GTPase activation protein; (InterPro:IPR008936) 0.0267572952628494 0.319041976080607 0.757485300115641 1 0.824506751277264 15.8700693858727 0.0267572952628494 0.0718060335371419
AT4G00420_at 4.53321227616384 4.73428153603771 4.49766281822702 4.69516502958601 4.926888775193 4.31961047845688 4.97107818418548 5.01706656654071 5.43342013392139 4.99740021414451 5.58800996025921 5.2416830813707 5.52238511291887 5.27157288088562 5.77770483736573 5.09127072882981 5.38494142949123 5.51736265042402 5.43081243597757 0.269501483772520 0.279043705739072 0.276524218588075 0.268492966636055 0.271059058941559 0.269448271140287 0.271192453113841 0.277410496809061 0.281595156547184 0.278094736234361 0.279136315516868 0.265247276522017 0.277679184014689 0.272476596258028 0.270732467376897 0.265247276522017 0.279441533110781 0.292002425391046 0.267923832184661 4 4 - 181586 182321 181959.625 181323 184387 - gene protein_coding_gene FALSE TRUE AT4G00420.1|AT4G00420.2 double-stranded RNA-binding domain (DsRBD)-containing protein similar to RTL1 (RNASE THREE-LIKE PROTEIN 1), double-stranded RNA binding [Arabidopsis thaliana] (TAIR:AT1G80650.1); similar to Os09g0416500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063178.1); similar to Os04g0509300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053278.1); similar to Dicer-like protein 4 (GB:P84634); contains InterPro domain Double-stranded RNA binding; (InterPro:IPR001159) -0.0334612290937768 -0.319024748824009 0.757497908956541 1 0.824501055836675 10.0676593396527 -0.0334612290937768 0.116132165472296
AT3G11730_at 7.75484265425355 8.40363101051082 7.57488253130004 7.84237213120156 8.7128771171358 8.1151705804951 8.13312940464382 8.0892440705081 7.93539515182146 7.7183087187497 7.58551477302735 8.09850834081761 7.93667566071624 8.08708894979467 7.76911676663313 7.87518810002403 7.62119240764901 7.9979197709593 8.10636845969005 0.2002366784614 0.189514912502727 0.205417772611794 0.197412472642084 0.198573209130694 0.205398897512242 0.2018000463891 0.191966272437223 0.216203396845232 0.193627360010936 0.197595615848724 0.189785289723889 0.188740423579457 0.194781591313377 0.201306574895873 0.195503654593542 0.214140256812302 0.19874093931301 0.191194518209001 3 3|0 -|/ 3709520 3711262 3710378 3709331 3711535 - gene protein_coding_gene FALSE TRUE AT3G11730.1 ATFP8 (Arabidopsis Rab GTPase homolog D1); GTP binding isoprenylated protein ATFP8 similar to AtRABD2b/AtRab1A (Arabidopsis Rab GTPase homolog D2b), GTP binding [Arabidopsis thaliana] (TAIR:AT5G47200.1); similar to ypt-related protein (GB:AAB04618.1); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) -0.0412548544151754 -0.319003388468101 0.757513542970036 1 0.824493994383373 15.9739810406510 -0.0412548544151754 0.159703864159133
AT2G01970_at 8.47102780689095 8.34304788515951 7.73029112438385 8.01513889702711 8.51486270644322 8.09980477594576 8.35332484685418 8.49489112706646 8.08006264387408 7.23683015065642 7.74807485164428 7.97295619361055 8.33379289586217 8.03368738671734 8.18928213017778 7.6919462484182 7.80979633474986 7.53617184030213 7.2720226037548 0.182385947141722 0.183590801644325 0.187401793891646 0.190740610608061 0.177306566503040 0.209567155339251 0.177306566503040 0.179236057226953 0.192954263065334 0.183830487502363 0.179878822450832 0.183681737550218 0.177306566503040 0.187367405981484 0.185246330107307 0.184135370510088 0.195007260860961 0.185473609424564 0.181252109680009 2 2 - 452274 453013 452766.091 451870 454884 - gene protein_coding_gene FALSE TRUE AT2G01970.1 endomembrane protein 70, putative similar to endomembrane protein 70, putative [Arabidopsis thaliana] (TAIR:AT1G14670.1); similar to transporter [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to Putative endosomal protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52585.1); similar to putative syntaxin SYP111 [Oryza sativa (japonica cultivar-group)] (GB:BAC57816.1); similar to Endosomal membrane proteins, EMP70 (ISS) [Ostreococcus tauri] (GB:CAL57055.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) 0.0296382392736994 0.31753822315008 0.758586203543116 1 0.824010729883589 15.9748496218616 0.0296382392736994 0.0931656640810163
AT1G26850_at 10.0181618237687 10.0348133736219 9.8776070327216 9.93787177958517 9.96747454944284 10.0409613515261 10.3838055799690 10.5275289347537 10.1970512220283 10.1694817002526 10.5593811546546 10.5940922560123 10.3143162305484 10.2127261888428 10.6555222158135 10.2382645770112 10.0831369105099 10.4048644206109 10.0608014775261 0.0718700767793653 0.0690435829172699 0.072428730061676 0.0684545338080482 0.0702853606535775 0.0759549995792121 0.0759224384806776 0.0683144082912921 0.0713398458023001 0.0681366749665078 0.0705981592627267 0.0684409865225022 0.0693297016453237 0.0735138751208447 0.0678266092806016 0.0699806401795958 0.0690660902752522 0.0688033364635318 0.0697223085427779 1 1 - 9301145 9301876 9301542.727 9300860 9304127 - gene protein_coding_gene FALSE TRUE AT1G26850.1|AT1G26850.2|AT1G26850.3 dehydration-responsive family protein similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G10440.1); similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT1G33170.1); similar to Putative methyltransferase [Medicago truncatula] (GB:ABE90775.1); similar to unknown [Malus x domestica] (GB:AAF27920.1); similar to 9058 (GB:AAD14491.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601)|similar to dehydration-responsive family protein [Arabidopsis thaliana] (TAIR:AT4G18030.1); similar to Putative methyltransferase [Medicago truncatula] (GB:ABE90775.1); similar to unknown [Malus x domestica] (GB:AAF27920.1); similar to 9058 (GB:AAD14491.1); contains InterPro domain Protein of unknown function DUF248, methyltransferase putative; (InterPro:IPR004159) -0.0223777776972933 -0.316290894081892 0.759499819328486 1 0.823601024681547 20.3611444502667 -0.0223777776972933 0.0299568703038937
AT2G35880_at 5.26299564606466 6.1274711416088 4.37803195833047 4.11905132805039 4.9246327280729 5.31601625470805 4.4784800631628 4.9557204168288 7.11189923816442 6.495962264361 8.36787405246188 8.00385849249236 7.27462113003747 7.71345090698806 8.43450109909238 7.00368670968043 5.71815669324296 7.05952480584605 6.88899480755417 0.221536405523437 0.212072914885759 0.230060259906427 0.231618354135318 0.215046441177257 0.232912390974300 0.217575294826676 0.213474261980612 0.220864185460193 0.212660253051876 0.222901686459598 0.217881847884061 0.215404807564082 0.228610732819941 0.213404480715475 0.220875398141097 0.241494982950839 0.216566500120314 0.216511180052734 2 2|0 -|/ 15070287 15071135 15070636.8 15070067 15072949 - gene protein_coding_gene FALSE TRUE AT2G35880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G32330.1); similar to putative BRI1-KD interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15848.1); similar to Os02g0200800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046221.1); similar to Os11g0571900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068122.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) 0.0464700249555952 0.315996433138116 0.759715557735622 1 0.823504533650658 12.0849222785651 0.0464700249555952 0.189202514253009
AT2G19080_at 6.71320830236049 6.79824521053208 6.85694250811896 6.66551475391438 7.23208072636989 6.54911104729859 6.96113372205623 6.93502544542241 5.26909036530941 5.83553291247603 5.91733280975861 5.94553272655138 5.91908463169381 5.98368449033692 5.65747833107084 5.59237218573139 5.8791726763734 5.55939414246916 6.03131730015739 0.218873348780745 0.222452862867337 0.221492036700495 0.216576186822975 0.226467481994565 0.228160534823056 0.224273490103468 0.216580273617186 0.242088517095863 0.223662520280279 0.220472531636601 0.216576186822975 0.220248663635934 0.221808975116142 0.223205101107691 0.217288183572206 0.232312213767814 0.241427757922401 0.219739138994311 2 2|0 +|/ 8270834 8271753 8271372 8269832 8272046 + gene protein_coding_gene FALSE TRUE AT2G19080.1 (METAXIN); unknown protein similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD67612.1); similar to Os06g0168000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056923.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987) 0.0343926977166173 0.31572445053524 0.75991484698869 1 0.823415486331413 12.5982760604570 0.0343926977166173 0.123707468311014
AT4G16420_at 7.68704003486049 7.74244556368033 7.76676901699427 7.79542267160177 7.89836959229076 8.10261985485624 7.52621716908193 8.0631915944218 7.32620369737173 7.81773108012304 7.57848400788706 7.24722305726736 7.5837277904278 7.4806047692833 7.37036367442309 7.5659986540368 7.5414382588228 7.11029157928744 7.7513811066159 0.173965531203681 0.173317790585454 0.176891062402326 0.172857885346237 0.172129597588743 0.193945747731944 0.171693326331629 0.179607479081353 0.180279869785223 0.174608451719174 0.173875998877219 0.176563419105500 0.179697871680990 0.182341570682944 0.174910352260602 0.177685241448546 0.182801483857723 0.17672369476377 0.179920307645360 4 4|0 -|/ 9262894 9263552 9263244 9262644 9266109 - gene protein_coding_gene FALSE TRUE AT4G16420.1|AT4G16420.2|AT4G16420.3 ADA2B (PROPORZ1); DNA binding / transcription factor Transcriptional co-activator. Essential for the developmental switch from cell proliferation to cell differentiation in response to variations in auxin and cytokinin concentrations. Identical to Transcriptional adapter ADA2b (AtADA2b) (Protein PROPORZ1) (ADA2B) [Arabidopsis Thaliana] (GB:Q9ATB4;GB:O23486;GB:Q3EA06;GB:Q3EA07); similar to ADA2A (Arabidopsis adaptor 2A homolog), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G07740.1); similar to Os03g0750800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051287.1); similar to putative transcriptional adaptor [Oryza sativa (japonica cultivar-group)] (GB:AAR87248.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Aspartate carbamoyltransferase, regulatory chain, C-terminal; (InterPro:IPR011069); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|Identical to Transcriptional adapter ADA2b (AtADA2b) (Protein PROPORZ1) (ADA2B) [Arabidopsis Thaliana] (GB:Q9ATB4;GB:O23486;GB:Q3EA06;GB:Q3EA07); similar to ADA2A (Arabidopsis adaptor 2A homolog), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT3G07740.1); similar to Os03g0750800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051287.1); similar to putative transcriptional adaptor [Oryza sativa (japonica cultivar-group)] (GB:AAR87248.1); contains InterPro domain SWIRM; (InterPro:IPR007526); contains InterPro domain Zinc finger, ZZ-type; (InterPro:IPR000433); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0304668970080735 -0.315230616724755 0.760276741192002 1 0.823253995872395 15.3560286548733 -0.0304668970080735 0.100005609730587
AT3G22440_at 9.98123358193336 9.91362377025799 9.84114117578388 9.8405166639135 10.6007371328974 10.1938410568373 9.72398321072048 9.5235343207466 9.83842891480398 9.72105198011042 9.45891293553427 9.44087950012237 9.63681164769965 9.50425439676889 9.32810600018184 9.55257273175216 9.4575284035744 9.51839001603348 9.73854550343405 0.0851373988941026 0.08291707544498 0.0938177225912103 0.0849143776914153 0.0840372503010444 0.08375298143208 0.0861684853098328 0.085571816290015 0.094742264298059 0.08291707544498 0.0862060689122726 0.08291707544498 0.0831730851767579 0.091184922172204 0.088384863155811 0.0839725355077624 0.089811311027866 0.0882163246556998 0.0868854973353452 3 3 + 7961238 7961864 7961570.909 7959761 7962207 + gene protein_coding_gene FALSE TRUE AT3G22440.1 hydroxyproline-rich glycoprotein family protein similar to hydroxyproline-rich glycoprotein family protein [Arabidopsis thaliana] (TAIR:AT4G14900.1); similar to Os03g0794900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051543.1); similar to putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC83627.1); contains InterPro domain Frigida-like; (InterPro:IPR012474) 0.0273192204761572 0.313830970858989 0.761302776221779 1 0.822797631935833 19.5789217408402 0.0273192204761572 0.0793631878485904
AT1G61040_at 5.1309876717302 5.41748212052202 4.92809580867518 4.92008096973645 5.32165543718941 5.7699921758988 4.53290913674095 4.81772476659903 5.76472033246416 5.68543371438438 5.33179506281887 5.25942298401888 5.39475064547337 5.49826558988405 5.45717079063119 5.5694726846071 5.16885285575162 4.92404286264368 5.49294899055243 0.185468490178323 0.186908649515389 0.186868521532341 0.184597533854773 0.180115290736676 0.182913637487283 0.180115290736676 0.184573521164727 0.192746150123194 0.191731182304718 0.183913436245255 0.180115290736676 0.187680123899474 0.182172418549256 0.186086928886156 0.180510629425284 0.186148564200295 0.182596030558737 0.185810525321478 1 1 + 22488830 22489356 22489107 22486872 22489634 + gene protein_coding_gene FALSE TRUE AT1G61040.1 VIP5 (VERNALIZATION INDEPENDENCE 5) similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to Plus-3 [Medicago truncatula] (GB:ABE88625.1); contains InterPro domain Plus-3; (InterPro:IPR004343) -0.0310245770057441 -0.313819426619176 0.761311241005827 1 0.822793876094477 10.5914523593593 -0.0310245770057441 0.104446637502689
AT4G26570_at 6.99138933088194 7.10359709142562 6.4501530884157 6.86893780167136 7.485952376232 6.76276370975786 7.49904416838909 7.08021303208242 6.96481176241295 6.58889704329389 7.46449803110348 7.1144248497528 6.6342739752596 7.08968724649922 6.94156857018979 6.75883767053958 6.76737986721956 6.70691669393452 6.6676074482408 0.207319598034986 0.197405190205528 0.215109536610974 0.203030611410224 0.197405190205528 0.216099325070943 0.200695360022586 0.197405190205528 0.228093268339477 0.20201903009282 0.201970077732183 0.200282646518321 0.212647258324001 0.199300771026947 0.199701290834740 0.198224538807884 0.203390746779148 0.199147907100605 0.200069472040243 4 4|0 -|/ 13408787 13409888 13409267.444 13408428 13411076 - gene protein_coding_gene FALSE TRUE AT4G26570.1|AT4G26570.2 ATCBL3 (CALCINEURIN B-LIKE 3) member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins) Identical to Calcineurin B-like protein 3 (SOS3-like calcium-binding protein 6) (CBL3) [Arabidopsis Thaliana] (GB:Q8LEM7;GB:O81447); similar to CBL2 (calcineurin B-like protein 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G55990.1); similar to calcineurin B-like protein 3 [Gossypium hirsutum] (GB:AAX20387.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125)|similar to CBL2 (calcineurin B-like protein 2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G55990.1); similar to calcineurin B-like protein 3 [Gossypium hirsutum] (GB:AAX20387.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) -0.0411747749645524 -0.313770842835153 0.761346865311813 1 0.822778071161623 13.8678248820461 -0.0411747749645524 0.162928239690612
AT1G60780_at 9.67874703434472 9.82130947767796 9.8093044659256 9.5751030454943 10.0562826674597 9.68784758339324 10.0200000478274 9.76260657831596 10.0154266141296 9.429106268674 9.82629361957875 9.7629952527534 9.7656860941356 9.74558360539177 9.6812625381916 9.60634114726582 9.48176089685495 9.82120682789557 9.40024162849136 0.105028621488074 0.0988281998960613 0.10405482086984 0.103004426319351 0.100062921152124 0.104135048056217 0.10323858142386 0.0992121782423726 0.100367114244288 0.107374280861266 0.0973405147635487 0.0973405147635487 0.100722768151883 0.0999874626161919 0.100702283284684 0.102196393960229 0.106186379802725 0.105293848612196 0.104097293094435 1 1|0 -|/ 22372997 22373866 22373393.8 22372618 22375824 - gene protein_coding_gene FALSE TRUE AT1G60780.1 clathrin adaptor complexes medium subunit family protein similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT1G10730.1); similar to clathrin-associated protein unc-101-like [Oryza sativa (japonica cultivar-group)] (GB:BAD81570.1); similar to Os01g0703600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044001.1); similar to Os05g0543100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056201.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) 0.0289675333434156 0.313619676711791 0.761457712480065 1 0.822728910134572 19.4645581549832 0.0289675333434156 0.091108007336855
AT3G07480_at 10.5714607488113 10.9355567644454 10.6566579401191 10.7388071689413 10.3392609263042 10.4373317293676 10.4975211843581 10.8465750153479 10.3351238409093 10.1525515316059 10.4709651610370 10.5660828094530 10.3812188363054 10.3932270278660 10.5558939076428 10.3346002602964 10.1934001693160 10.4378670420310 10.0802450667790 0.0789087817328762 0.0776434047824989 0.0797687208734917 0.078507717208408 0.0812192136851977 0.0778836540791254 0.0775670331622459 0.0810258227842866 0.0812395186157942 0.0797024314698216 0.0764568317549665 0.0761280208127179 0.0766831842493547 0.0866402758233898 0.0792293028524143 0.0792109513868784 0.089587620448417 0.0799047280504721 0.0803214654124064 3 3 + 2389032 2389458 2389253.364 2388958 2389817 + gene protein_coding_gene FALSE TRUE AT3G07480.1 electron carrier/ iron ion binding similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD34428.1); similar to Os09g0514600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063661.1); contains InterPro domain Adrenodoxin; (InterPro:IPR001055); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041) 0.0287930507938698 0.313411569571324 0.761610322894077 1 0.822661269012393 20.9308782921326 0.0287930507938698 0.0900501152859566
AT3G58140_at 8.86008269656612 9.10212307956349 8.70352684744733 8.88835701540209 8.9442803577171 8.41655925500604 8.98440270027237 8.96837480012105 9.27560349232463 9.30225733737606 9.5627867421671 9.64560522778183 9.15886671652693 9.553109833727 9.47900959059447 9.68981145169277 9.3013945670943 9.47411540536234 8.9634296307928 0.121046506624845 0.117175611258259 0.131847508690455 0.120411853298136 0.117772359046038 0.136347323923494 0.122032900004318 0.123716562305783 0.126119935538843 0.117319721772466 0.125040956490233 0.121713425669203 0.118304136455662 0.117097455439428 0.122632396935351 0.117587068612334 0.130639809159073 0.120983778044805 0.125138823156719 3 0|3 /|- 21541196 21542157 21541693.875 21540708 21543549 - gene protein_coding_gene FALSE TRUE AT3G58140.1 phenylalanyl-tRNA synthetase class IIc family protein similar to phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative [Arabidopsis thaliana] (TAIR:AT4G39280.1); similar to Os12g0533700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066926.1); similar to phenylalanyl-tRNA synthetase class IIc family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98813.1); contains InterPro domain Phenylalanyl-tRNA synthetase, class IIc; (InterPro:IPR002319); contains InterPro domain Phenylalanyl-tRNA synthetase, mitochondrial; (InterPro:IPR004530); contains InterPro domain Ferredoxin-fold anticodon-binding; (InterPro:IPR005121); contains InterPro domain Aminoacyl-transfer RNA synthetase, class II; (InterPro:IPR006195) 0.0310461690664454 0.312395757500889 0.762355402399791 1 0.822331728008782 18.1902221416950 0.0310461690664454 0.105477093545302
AT3G55530_at 6.315936974806 6.78233428736435 6.4498687202954 6.44721456027004 7.2800003437457 6.95365430920659 6.38709907000827 6.81320685717139 5.4523564551066 5.96211182907336 5.28874655504288 5.66326440803015 5.80187053195375 5.71856060994731 5.16989848556983 5.87355525803748 5.73022138549354 5.98800131458549 6.37583038896557 0.235645644631088 0.231733516476435 0.23695659673728 0.238014504486333 0.235296317158488 0.233244102090138 0.229598230108264 0.242334583320226 0.241777534376851 0.232649861870441 0.236994371143387 0.229598230108264 0.239875715780711 0.231878878747428 0.248353879666628 0.233663433045115 0.232787566536145 0.234543341105416 0.237138907457228 3 3|0 -|/ 20606539 20607669 20607448.9 20606105 20608582 - gene protein_coding_gene FALSE TRUE AT3G55530.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G04790.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95226.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0338972765453436 -0.31219162467693 0.762505161669232 1 0.82226563093625 12.4708465785073 -0.0338972765453436 0.12305185433128
AT1G51730_at 7.80351163240409 7.59960806230958 7.26831333694663 6.8878578267751 7.74494426320034 7.41224694113963 7.21715645763116 6.84171054000596 6.25118066542063 6.17667930789522 6.39682732469377 6.21229695243116 6.33733528240768 6.72863166812882 6.3476760988787 6.11944630319 6.22391397544074 5.78561444359877 6.46245862606194 0.208957642702421 0.207614205893335 0.199576000668457 0.202831778277182 0.208161021826902 0.213149422013161 0.201826649991139 0.20786093398053 0.211804787644756 0.201503963650755 0.207301744826954 0.199576000668457 0.199576000668457 0.206462340441136 0.205787636442001 0.202077497178439 0.211434418758322 0.221882100178553 0.20484807909772 1 0|1 /|- 19190516 19191608 19191087.111 19190160 19192456 - gene protein_coding_gene FALSE TRUE AT1G51730.1 RWD domain-containing protein similar to RWD domain-containing protein [Solanum tuberosum] (GB:ABB16988.1); contains InterPro domain RWD; (InterPro:IPR006575) -0.0324805957176684 -0.312188131430913 0.762507724533553 1 0.822264500209458 13.6297889438293 -0.0324805957176684 0.114526395386848
AT1G51950_at 7.73169797020488 7.8355271763161 8.25278876306934 8.2528897417261 8.30868251910155 8.38045570333935 8.12547697759702 8.37325913184758 8.04896524868222 7.68969015716488 8.07462967566274 7.743852291108 7.85743586982386 7.73572044442787 7.65584786280897 7.64379773337625 7.21504340052376 7.09507312081452 7.85006124484748 0.18245569201636 0.182182191760874 0.189515036794878 0.179948403890791 0.177948382375253 0.189209925635595 0.181106260660390 0.188099459496316 0.190917669335647 0.179771122106055 0.181441392778135 0.182981602538408 0.187941141953996 0.190334819495601 0.188735493324835 0.18134305041242 0.195876349547856 0.195944685959332 0.186014549138980 1 1|0 +|/ 19309553 19310612 19310058.111 19308984 19311179 + gene protein_coding_gene FALSE TRUE AT1G51950.1 IAA18 (indoleacetic acid-induced protein 18); transcription factor Identical to Auxin-responsive protein IAA18 (Indoleacetic acid-induced protein 18) (IAA18) [Arabidopsis Thaliana] (GB:O24408;GB:Q8L9I9); similar to PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1), transcription factor [Arabidopsis thaliana] (TAIR:AT3G16500.1); similar to Auxin-responsive protein IAA16 (Indoleacetic acid-induced protein 16) (GB:P0C127); similar to Os02g0228900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046357.1); similar to Os01g0190300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042263.1); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain AUX/IAA protein; (InterPro:IPR003311) 0.0234916837022026 0.311671082610224 0.762887098050481 1 0.82209727310785 15.9028875479251 0.0234916837022026 0.0481228585037371
AT3G04580_at 5.34334540878026 5.61148362199370 5.4375664100643 5.2723533217723 5.1930129369956 4.74577670216315 4.71845928393345 5.03737298396806 4.62161459748633 4.45883062299318 4.83371040344627 4.61268806540036 4.66481587251176 4.48682175445489 4.53353008807345 4.54977229324895 4.32017527799428 4.92417060101792 4.53067084969888 0.231341297426764 0.217397459352672 0.227250190512332 0.237322525775758 0.225744506495207 0.238595031048293 0.230648767916937 0.223263602167278 0.239126722917903 0.219715232885013 0.224872766415159 0.221947414245139 0.225871097363475 0.233535470422434 0.222248485239062 0.21953746782232 0.230372723373653 0.235125294116053 0.225385340425178 3 3 - 1235589 1236225 1235862.273 1235289 1238499 - gene protein_coding_gene FALSE TRUE AT3G04580.1|AT3G04580.2 EIN4 (ETHYLENE INSENSITIVE 4); receptor|EIN4 (ETHYLENE INSENSITIVE 4) Ethylene receptor, subfamily 2. Has serine kinase activity. similar to ETR2 (ETHYLENE RESPONSE 2), receptor [Arabidopsis thaliana] (TAIR:AT3G23150.1); similar to putative ethylene receptor ETR3 [Lactuca sativa] (GB:AAQ15124.1); similar to ethylene receptor homolog [Lycopersicon esculentum] (GB:AAD31397.1); similar to putative ethylene receptor [Nicotiana tabacum] (GB:AAF20093.2); contains InterPro domain Histidine kinase A, N-terminal; (InterPro:IPR003661); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain GAF; (InterPro:IPR003018); contains InterPro domain Histidine kinase, homodimeric; (InterPro:IPR009082); contains InterPro domain ATP-binding region, ATPase-like; (InterPro:IPR003594); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) 0.0315919362694976 0.311341103032552 0.76312924887405 1 0.821990690469827 9.74629595099782 0.0315919362694976 0.109575128016662
AT1G74640_at 9.44808339391164 9.56199927478531 9.56499702851604 9.62668615224687 9.30614054389616 9.25434175248142 10.3021828790088 10.0704302181215 9.45408249258997 9.62079656426984 9.92764544040022 9.72861041452483 9.83998410576635 9.79449927145083 9.84957349459733 9.86638579898458 9.8792752585196 9.63913474255158 9.28915011392012 0.103085568497272 0.106761279410565 0.104971515845496 0.103247520646709 0.109681587025903 0.102876016709801 0.108996464123532 0.104929841997026 0.115803832159680 0.113533488882063 0.107070646937064 0.104993333244162 0.107468035701433 0.107199451325611 0.10794145534388 0.104947187315067 0.109847310404990 0.113285098131434 0.107704116857240 1 1 + 28037666 28038256 28037950.091 28036424 28038434 + gene protein_coding_gene FALSE TRUE AT1G74640.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD28539.1); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) -0.0233351982911323 -0.311221619372856 0.763216937048382 1 0.821952124692026 19.2770151334257 -0.0233351982911323 0.0468127376775854
AT1G30490_at 6.86926965648167 6.39417790285517 6.9301703790505 6.74562208052275 8.12140007888543 6.99425989603327 6.7912229211991 6.79081841152582 7.1516591605186 6.8740454769847 6.97164697571538 6.36648321317153 6.56135335968344 6.926394890581 5.69846455483632 6.82368016058764 6.44433794989629 6.39064885771538 6.6990979320221 0.21439210021831 0.212528951586120 0.222946963323827 0.221536845205099 0.211784996891556 0.229569846982554 0.213160204480597 0.212845844290516 0.221271777634203 0.212717085941352 0.214348299924609 0.211989708270182 0.222553147743253 0.215748109616337 0.22738181087311 0.211990908484516 0.224178830918295 0.223931348996615 0.21883148033986 1 1|0 -|/ 10796333 10796978 10796604.222 10796117 10800943 - gene protein_coding_gene FALSE TRUE AT1G30490.1 PHV (PHAVOLUTA); DNA binding / transcription factor Dominant PHV mutations cause transformation of abaxial leaf fates into adaxial leaf fates. Has overlapping functions with PHABULOSA, REVOLUTA and CORONA/ATHB15 in patterning the apical portion of the embryo. Encodes a member of HD-Zip family which contains homeodomain-leucine zipper domains and domain similar to a mammalian sterol binding domain. similar to REV (REVOLUTA), DNA binding / lipid binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G60690.1); similar to PHB (PHABULOSA), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT2G34710.1); similar to ATHB-15 (INCURVATA 4), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT1G52150.1); similar to class III HD-Zip protein 3 [Populus trichocarpa] (GB:AAX19052.1); similar to class III HD-Zip protein 4 [Populus trichocarpa] (GB:AAX19053.1); similar to PHAVOLUTA-like HD-ZIPIII protein [Nicotiana sylvestris] (GB:AAS66760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.0505498038528922 0.311097908575337 0.763307731289048 1 0.821912209739864 13.6701895500435 0.0505498038528922 0.214071865058140
AT3G01040_at 6.22561493931551 6.19625909614709 6.60907967260896 6.54971408526631 6.21878111288257 6.10513198325142 6.76010201287106 6.66820697989423 6.25001519769743 5.51179048947248 6.5360309457206 5.75217803008578 5.72482796120221 5.46209370521033 5.65078621272648 6.16110178870051 6.40699105103241 5.93951883881801 5.69402234729229 0.242291990506499 0.232921305005922 0.240015147365118 0.240581037783694 0.236512865257606 0.234343470643796 0.237766703898363 0.233400776733151 0.234487866832841 0.236969373594020 0.230851539526963 0.230851539526963 0.244657043009979 0.246795516365614 0.240836626065256 0.235375295300823 0.239100077065575 0.241741272040603 0.242787182630376 3 0|3 /|+ 11371 11902 11645.2 8964 12429 + gene protein_coding_gene FALSE TRUE AT3G01040.1 GAUT13 (Galacturonosyltransferase 13); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT14 (Galacturonosyltransferase 14), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups [Arabidopsis thaliana] (TAIR:AT5G15470.1); similar to Os12g0578500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067123.1); similar to Os03g0211800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049351.1); similar to Glycosyl transferase family 8 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94604.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.0218563391558237 0.310794441387012 0.763530469309043 1 0.821814362461546 12.3030114410335 0.0218563391558237 0.0277680540353075
AT2G35760_at 6.08280408373589 6.96163323255715 6.58040625879985 6.83133614305188 7.94424688712716 6.59293495249334 8.35421414704273 8.48716489295504 8.1480947809327 7.97831529446346 8.51421884123883 8.55335254894874 8.35142859103168 8.8463786737582 7.2646549003454 8.37709523215837 7.55044677191397 8.65212281269168 7.59732970043213 0.264819689974015 0.249354843679908 0.273019740123451 0.277231186345825 0.253606854223121 0.256685052675200 0.252621631468594 0.257027902292596 0.253398798890527 0.245370829182397 0.245370829182397 0.245370829182397 0.250417378351908 0.248389769968701 0.261219875047975 0.245370829182397 0.275076496346864 0.249106595138617 0.245370829182397 2 2|0 +|/ 15039268 15040145 15039785.444 15039002 15040386 + gene protein_coding_gene FALSE TRUE AT2G35760.1 integral membrane family protein similar to integral membrane family protein [Arabidopsis thaliana] (TAIR:AT4G16442.1); similar to plant integral membrane protein TIGR01569 containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99118.2); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702); contains InterPro domain Conserved hypothetical protein CHP1569, integral membrane plant; (InterPro:IPR006459) -0.064211995401609 -0.310427423950771 0.763799882818513 1 0.821696149106244 15.3151553522805 -0.064211995401609 0.28325122618169
AT3G52950_at 6.75613752172048 6.96258109609443 7.15333751216259 7.22855837291105 7.19186903575304 7.23248782861745 7.91238203937715 7.69279682908049 6.3167574625596 6.76120502658285 6.49128800231882 6.67258460570713 6.62445917543823 6.19858157808362 6.26722272821637 6.97613097499804 6.96915630126282 6.6035271158948 6.47878884258822 0.211433208708651 0.209993938907188 0.207326458145168 0.206922294778797 0.216172602740468 0.206947197656528 0.223531529791310 0.211725917733128 0.220973804323898 0.223015319862829 0.212172191038102 0.2066044579552 0.211537126533968 0.207541587564097 0.213653364068639 0.207327254918071 0.209971566683387 0.212061880516054 0.217802445686722 3 3 + 19646987 19647428 19647234.182 19645433 19647797 + gene protein_coding_gene FALSE TRUE AT3G52950.1 CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein similar to CBS domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G36500.1); similar to Octicosapeptide/Phox/Bem1p; CBS [Medicago truncatula] (GB:ABE86173.1); similar to Os12g0169400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066263.1); similar to CBS domain-containing protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95929.1); contains InterPro domain CBS; (InterPro:IPR000644); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) -0.0239797422720047 -0.310145492798939 0.764006860796251 1 0.82160543393119 13.8259117398730 -0.0239797422720047 0.0542146534086007
AT3G54820_at 5.65982680840892 5.86170045420739 5.97311897381706 5.9686031486788 6.16211556176174 6.82372482980532 6.89464031491273 7.1319052253542 6.1064571525505 6.43420838119119 6.40894944660384 6.24837931235453 6.1148248314836 6.18422516162286 5.96391406130478 5.90562515459153 5.82920422925435 6.44961742733313 5.61367312333757 0.195196451274814 0.187104628939978 0.191597758428714 0.187368443369455 0.197970597567779 0.192660027064283 0.190219080131849 0.188641117385606 0.193777929518186 0.197795527855900 0.191676199044049 0.190330177579011 0.190407792282617 0.187575949880318 0.189465060690902 0.190683267872346 0.196963996936537 0.193285492408383 0.190423737516138 3 3 + 20313516 20314664 20313954.091 20312999 20314988 + gene protein_coding_gene FALSE TRUE AT3G54820.1 PIP2;5/PIP2D (plasma membrane intrinsic protein 2;5); water channel Identical to Probable aquaporin PIP2.5 (Plasma membrane intrinsic protein 2d) (PIP2d) (PIP2.5) [Arabidopsis Thaliana] (GB:Q9SV31); similar to PIP2B (plasma membrane intrinsic protein 2,2), water channel [Arabidopsis thaliana] (TAIR:AT2G37170.1); similar to plasma membrane intrinsic protein 2-2 [Pyrus communis] (GB:BAB40143.1); contains InterPro domain Aquaporin; (InterPro:IPR012269); contains InterPro domain Major intrinsic protein; (InterPro:IPR000425) -0.0342406690814585 -0.309929157705688 0.764165695419876 1 0.821535879723491 12.4042237506658 -0.0342406690814585 0.126554299760836
AT1G70750_at 4.57490707062834 4.96034414154498 4.25032051463395 5.03430116789738 5.26385000526314 4.46057885227779 4.25067463174708 4.81067987213827 5.11583649318387 4.72345819538658 4.91164141701587 5.23323405301813 4.61113102057159 5.46237913034013 5.07988514290845 5.51867143422557 4.34832239987233 4.86259988244483 5.16406592465354 0.225110267778033 0.226890431638189 0.224315104230677 0.242809037437475 0.225380845683096 0.234547180853687 0.238643523972972 0.220634035507505 0.226297773004221 0.234319566170672 0.224969123611805 0.222064267996598 0.231701753099691 0.228775368164389 0.224977232904626 0.221766070256099 0.220634035507505 0.231700791033176 0.228575126748800 1 1 - 26684415 26684915 26684654.091 26683637 26686866 - gene protein_coding_gene FALSE TRUE AT1G70750.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G16720.1); similar to Os03g0708700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051039.1); similar to Protein of unknown function, DUF593, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX95673.1); similar to Os03g0259900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049616.1); contains InterPro domain Protein of unknown function DUF593; (InterPro:IPR007656) 0.0527370308225077 0.308946765847547 0.764887122011825 1 0.821220625468579 9.70300866424517 0.0527370308225077 0.227093471889536
AT2G44900_at 5.84092092547917 6.37407771466012 6.07612706825388 5.99896336319826 6.39360759977955 6.65044200943906 5.76975756326578 5.96752766633449 5.75644680193967 5.8520506257506 5.13241129942308 5.25075531157404 5.8044445551097 5.24713658045108 5.00757367795424 5.81386968229358 6.02387026624108 5.85653111576933 6.00518837133311 0.260024605551072 0.267311314546816 0.271405461519468 0.268180903962048 0.260503272964021 0.265294041797784 0.265409250269547 0.264290633651936 0.284774652283465 0.267914891886919 0.272258258783153 0.263949481818173 0.269179087746696 0.284310463642842 0.269754104275811 0.262239893385843 0.28046556379832 0.264963044214889 0.266091476710189 2 2 - 18518801 18519640 18519228.364 18518794 18523483 - gene protein_coding_gene FALSE TRUE AT2G44900.1 armadillo/beta-catenin repeat family protein / F-box family protein ARABIDILLO-1 and its homolog, ARABIDILLO -2, are unique among Arabidopsis Arm-repeat proteins in having an F-box motif and fall into a phylogenetically distinct subgroup from other plant Arm-repeat proteins Similar to arm repeat protein in rice and armadillo/beta-catenin repeat family protein / F-box family protein in Dictyostelium. ARABIDILLO-1 promote lateral root development. Mutant plants form fewer lateral roots, while ARABIDILLO-1-overexpressing lines produce more lateral roots than wild-type seedlings. similar to armadillo/beta-catenin repeat family protein / F-box family protein [Arabidopsis thaliana] (TAIR:AT3G60350.1); similar to Os10g0563200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065399.1); similar to putative arm repeat protein [Oryza sativa] (GB:AAG60190.1); similar to armadillo/beta-catenin repeat family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47988.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Leucine-rich repeat, cysteine-containing; (InterPro:IPR007089) -0.0312202479198221 -0.308885374995019 0.764932212881355 1 0.82120095728185 11.8280793191895 -0.0312202479198221 0.108802720208688
AT2G45520_at 8.00112750342462 7.62295005695639 7.80814843408415 7.64159887219249 7.90743075467395 7.6627360529044 7.84343556578045 7.69067455383012 7.34355707428174 8.14843601746274 8.16670128677083 8.20727300694755 8.06985609642642 7.82539762996842 7.92233472831437 7.83933799597887 7.91441879739413 7.65161985408898 8.08569032329667 0.139744746249146 0.140136185635281 0.144340000544157 0.149003073347496 0.146049538649063 0.147204990742646 0.139744746249146 0.143741253172923 0.175480019148584 0.141598403249297 0.150566788532958 0.146650571775002 0.149072707016129 0.160074764865009 0.141247992645107 0.143658475374877 0.159587182617991 0.149706389025796 0.139744746249146 2 2|0 -|/ 18762309 18763288 18762647 18762141 18763376 - gene protein_coding_gene FALSE TRUE AT2G45520.1 similar to Os06g0129800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056684.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD68389.1) 0.0279106139691656 0.308213361568225 0.765425860779913 1 0.820985909451713 15.6766853389808 0.0279106139691656 0.0872113715295598
AT1G30400_at 9.81910276856124 10.0001828662548 10.3580622272318 10.2879288998224 10.0758948925526 9.93311921394346 10.2491131628888 9.89891562931011 9.178132404529 9.49567864653863 9.3171774009698 9.32025010842598 8.79413300739614 8.93993841645999 8.73396544720375 9.43072334113107 9.52745138530055 8.87086253238907 9.34876332032815 0.134672524182694 0.136282546423373 0.137106532359114 0.134679454696808 0.137237135034038 0.140068678314040 0.136871163501870 0.136445620985445 0.146765464407176 0.135002822361133 0.134260053665852 0.135799388480551 0.151982390389435 0.139416129774953 0.141063795860634 0.134260053665852 0.135617578953416 0.144382371901255 0.137921228775967 1 1|0 +|/ 10736905 10737610 10737244.1 10727620 10738037 + gene protein_coding_gene FALSE TRUE AT1G30400.1|AT1G30400.2 ATMRP1 (Arabidopsis thaliana multidrug resistance-associated protein 1); xenobiotic-transporting ATPase glutathione S-conjugate transporting ATPase (AtMRP1) mRNA. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. Identical to Multidrug resistance-associated protein 1 (EC 3.6.3.44) (Glutathione S-conjugate-transporting ATPase 1) (ATP-energized glutathione S- conjugate pump 1) (MRP1) [Arabidopsis Thaliana] (GB:Q9C8G9;GB:O24635;GB:Q8RX76;GB:Q9SAQ1); similar to ATMRP2 (MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 2), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT2G34660.1); similar to ATMRP12 (Arabidopsis thaliana multidrug resistance-associated protein 12) [Arabidopsis thaliana] (TAIR:AT1G30420.1); similar to ATMRP13 (Arabidopsis thaliana multidrug resistance-associated protein 13) [Arabidopsis thaliana] (TAIR:AT1G30410.1); similar to Multidrug resistance-associated protein 12 (Glutathione S-conjugate-transporting ATPase 12) (ATP-ener (GB:Q9C8H1); similar to MRP-like ABC transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD59448.1); similar to H0714H04.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66978.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0260613586276022 -0.308080925966241 0.765523158732465 1 0.820943583295277 19.3066253719247 -0.0260613586276022 0.0735699915063319
AT1G16060_at 6.08432872852837 5.84141638572478 5.21058148521601 5.00925636547652 5.51024226297159 4.85731302838252 5.41098391755938 5.33046750170009 4.33678738531641 5.93321006341849 5.85618634451027 4.92615806517148 5.97340772408449 6.85203737629362 4.50926114580520 5.16822801886218 5.59650429239677 5.96949656396174 4.7860370829818 0.231116862722670 0.221446812606335 0.220431055706870 0.218787021897652 0.235825516739834 0.232236470502234 0.217293964552834 0.226924491152068 0.239225663487752 0.220077079976457 0.216424491612193 0.216424491612193 0.218534969374811 0.220765662827826 0.217397565154018 0.216424491612193 0.230283592190802 0.222038459701878 0.227573328101706 1 0|1 /|+ 5511172 5511560 5511306.2 5508501 5511729 + gene protein_coding_gene FALSE TRUE AT1G16060.1|AT1G16060.2 ovule development protein, putative similar to ovule development protein, putative [Arabidopsis thaliana] (TAIR:AT1G79700.2); similar to Pathogenesis-related transcriptional factor and ERF [Medicago truncatula] (GB:ABE94683.1); similar to Os09g0423800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063215.1); contains InterPro domain Pathogenesis-related transcriptional factor and ERF; (InterPro:IPR001471) 0.0338904581401644 0.307200551771279 0.766170064724096 1 0.820662668883833 10.7193677687572 0.0338904581401644 0.126263235902469
AT1G13280_at 7.75541730885966 8.21326341840414 6.48893561293502 6.53168580101323 7.50251021913549 7.31691196736042 7.93337825286845 7.73044688369508 6.8244290332757 7.10529504681047 8.13634194484073 8.46274058342408 8.07957338740026 8.00695537725142 8.05942488737903 8.108351746552 7.65047662974154 8.05785787070502 7.26529658397048 0.216825917624042 0.224788566981816 0.219813296386845 0.219879471514866 0.216636088564712 0.228133640704058 0.211034570546227 0.217829455153328 0.226939872781468 0.219538366102225 0.225507206288833 0.214844941788208 0.211366971209026 0.221981703039262 0.226951963827284 0.225508000395792 0.233986659583665 0.228875820832072 0.222089979753623 1 0|1 /|+ 4548097 4548520 4548305 4547451 4548872 + gene protein_coding_gene FALSE TRUE AT1G13280.1 AOC4 (ALLENE OXIDE CYCLASE 4) Encodes allene oxide cyclase. One of four genes in Arabidopsis that encode this enzyme, which catalyzes an essential step in jasmonic acid biosynthesis. Gene expression is reduced during senescence, a process that involves jasmonic acid signalling pathway. Identical to Allene oxide cyclase 4, chloroplast precursor (EC 5.3.99.6) (AOC4) [Arabidopsis Thaliana] (GB:Q93ZC5;GB:Q9FX69); similar to AOC3 (ALLENE OXIDE CYCLASE 3) [Arabidopsis thaliana] (TAIR:AT3G25780.1); similar to allene oxide cyclase [Medicago truncatula] (GB:CAC83767.1); contains InterPro domain Allene oxide cyclase; (InterPro:IPR009410) 0.0285464247735441 0.306532206175261 0.766661299735271 1 0.820449933794386 15.0016797787493 0.0285464247735441 0.0927221802114644
AT1G35340_at 9.05546091854276 9.0676342989683 9.1505535979744 8.81408248752934 9.41205452601918 8.93550655079735 9.33699745317048 9.13427650307423 9.54673828835544 9.24872257455471 9.53226055910957 9.79432691800049 9.28189748631266 9.63160612188084 9.40231822261566 9.79308901535983 9.0645975993286 9.50196731128751 9.31142005434964 0.104420880570823 0.100272131258422 0.107250389182328 0.108774595671581 0.0994899820720594 0.100079242629156 0.104657258621281 0.0993935371636002 0.111302802950251 0.099473102043164 0.0976265015144185 0.100311066625713 0.098721111164641 0.100098937942394 0.101327390890843 0.0976265015144185 0.107634264103894 0.102683080628719 0.0980682845658537 1 1|0 +|/ 12978429 12979685 12979184.75 12977743 12979888 + gene protein_coding_gene FALSE TRUE AT1G35340.1|AT1G35340.2|AT1G35340.3 ATP-dependent protease La (LON) domain-containing protein similar to ATP-dependent protease La, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA92084.1); contains InterPro domain Phosphopantetheine attachment site; (InterPro:IPR006162)|similar to ATP-dependent protease La, putative [Oryza sativa (japonica cultivar-group)] (GB:ABA92084.1); similar to Os11g0219000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067517.1) 0.0303772978123766 0.303468512222411 0.768914541713231 1 0.819480548588883 18.5479298970046 0.0303772978123766 0.106896071143931
AT1G08470_at 6.20066864057048 6.38053633940285 5.97121558437575 6.11244487337072 6.33373323955716 6.50506892747696 6.79713166274931 6.69908528827482 6.74695878768455 6.85992198523223 7.31745395985005 7.41625471765451 6.8059758005447 7.21656020202746 7.45024392640975 6.61042022507761 6.62268556201161 7.2244189020962 6.63645815451303 0.176323798542255 0.172234388717409 0.177931430240891 0.172435291665963 0.170415206114619 0.176929731427334 0.171377750800704 0.174353642462055 0.185881199515181 0.175899037194636 0.174560546501585 0.171272923677504 0.172706936301871 0.174603925501519 0.173436125200067 0.169104592299608 0.189946582251482 0.180036608650764 0.174039201665448 1 1 - 2682265 2683306 2682611.545 2682130 2684103 - gene protein_coding_gene FALSE TRUE AT1G08470.1 strictosidine synthase family protein similar to strictosidine synthase family protein [Arabidopsis thaliana] (TAIR:AT5G22020.1); similar to putative strictosidine synthase [Oryza sativa (japonica cultivar-group)] (GB:AAR87254.1); similar to Os03g0750700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051286.1); contains InterPro domain Strictosidine synthase; (InterPro:IPR004141) 0.0232410964640855 0.303088976899251 0.769193838874264 1 0.819361121767913 13.2903762216900 0.0232410964640855 0.0522805874520192
AT3G27340_at 4.8255822758357 5.14245932558188 5.6120991252481 5.11995918378656 5.6882679156526 5.70771255411399 6.06812313312251 5.85941808160716 5.38703593379713 5.52386336362292 5.93613695253555 5.68543332229095 5.63281111216886 5.92371084044543 5.15118701490058 5.77788959381677 5.09171686743815 5.86579445318547 5.98077591434906 0.205727355754658 0.198671982478123 0.206741430404733 0.204067046828739 0.19404538868783 0.201206444130789 0.198159106039651 0.193879022102588 0.204351063302999 0.194084355601712 0.208075916599123 0.20387994309055 0.198598314081170 0.199132203063444 0.212903653967335 0.201384132280963 0.204963267452215 0.202579328231011 0.2008212918045 3 3 + 10122560 10123901 10123268.727 10122471 10124188 + gene protein_coding_gene FALSE TRUE AT3G27340.1|AT3G27340.2|AT3G27340.3 similar to COG3536: Uncharacterized protein conserved in bacteria [Magnetospirillum magnetotacticum MS-1] (GB:ZP_00055772.1); similar to Os02g0197800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046202.1); similar to hypothetical protein amb0010 [Magnetospirillum magneticum AMB-1] (GB:YP_419373.1); contains InterPro domain Protein of unknown function DUF971; (InterPro:IPR010376)|similar to Os02g0197800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046202.1); similar to B1065G12.33 [Oryza sativa (japonica cultivar-group)] (GB:BAB90551.1); contains InterPro domain Protein of unknown function DUF971; (InterPro:IPR010376)|similar to Os01g0904300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045122.1); similar to Os02g0197800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046202.1); similar to B1065G12.33 [Oryza sativa (japonica cultivar-group)] (GB:BAB90551.1); contains InterPro domain Protein of unknown function DUF971; (InterPro:IPR010376) 0.0303203031690912 0.301828315450335 0.770121805113608 1 0.818965482714122 11.1347744111289 0.0303203031690912 0.107593343800677
AT1G56280_at 12.6164245299556 12.7476169818459 12.6302593902314 12.8068504693538 13.1577719901183 13.0246361099021 12.4068746315740 12.717167100659 12.8557571661278 12.6136445986478 12.5789373600729 12.3447422954167 12.7747924141547 12.6408256111764 11.8770822667838 12.5101233298909 12.3052317671508 12.5373462344262 12.8676017524896 0.0678832211090044 0.0647234894279399 0.067448543728565 0.0664729251853817 0.0622448436149762 0.0644918321685922 0.0647774001444591 0.0616438866609703 0.0626394932909856 0.062641810904539 0.0616438866609703 0.064678913263955 0.0623271450599963 0.0616438866609703 0.0687756329897814 0.0620486148283795 0.0757409657810491 0.0634629569608447 0.0616438866609703 1 1|0 -|/ 21077043 21078349 21077466.333 21076542 21078542 - gene protein_coding_gene FALSE TRUE AT1G56280.1 ATDI19 (Arabidopsis thaliana drought-induced 19) Encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The increase in transcript level is independent from abscisic acid level. Sequence is not similar to any protein of known function. It appears to be a member of plant-specific gene family. It's phosphorylated by AtCPK11 in a Ca(2+)-dependent manner at Thr105 and Ser107 within the AtDi19 bipartite nuclear localization signal similar to drought-responsive family protein [Arabidopsis thaliana] (TAIR:AT5G26990.1); similar to fiber protein Fb2 [Gossypium barbadense] (GB:AAN77145.1); contains InterPro domain Drought induced 19; (InterPro:IPR008598) -0.0250036668224496 -0.301129126080865 0.770636643364768 1 0.818746747682713 25.3760183166079 -0.0250036668224496 0.0697396226552616
AT2G23390_at 9.32153011560623 9.20755696686465 9.53873452433448 9.40930938779143 10.0033850636334 9.6735021908171 10.1626927516179 9.60858141860387 9.79794073890772 9.78928248271622 9.72178795953244 9.55438731374038 9.59624264670555 9.52060337634947 9.31628483877084 9.98283521358497 9.87613920958263 9.74353529996721 9.83646489982606 0.106725356602752 0.103103829367877 0.107904567607264 0.104940600925255 0.10718062620391 0.104537103913651 0.109194628461453 0.114401543348816 0.115712883561892 0.108198516201673 0.110837582427003 0.10579093331268 0.107328245437057 0.108640086557508 0.121121624927173 0.103103829367877 0.110509483302547 0.108272219997786 0.107912492140726 2 0|2 /|- 9967806 9968450 9968037.375 9967452 9970703 - gene protein_coding_gene FALSE TRUE AT2G23390.1 similar to Os04g0442200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052881.1); similar to P0076O17.10 [Oryza sativa (japonica cultivar-group)] (GB:CAE02512.1); contains InterPro domain Protein of unknown function DUF482; (InterPro:IPR007434) -0.0313882898666056 -0.300183789633302 0.771332919345015 1 0.818451796113776 19.3515980637899 -0.0313882898666056 0.115520025243490
AT3G21220_at 5.87369044803079 6.757052472968 6.15681225274728 6.48811155698704 5.54064737981458 5.48490365401973 5.80415492364078 6.24185146275607 5.34382170048512 5.35518061983205 5.63669794742072 5.96709399966947 5.27492134366679 5.20434983309289 5.27570734672747 5.12312659112131 5.4491212417161 5.20881293433305 4.46909123718411 0.207084892234759 0.202547892030504 0.211137290360205 0.215087405882997 0.207081901358664 0.206974617710608 0.212456850536675 0.203423665358699 0.215681887006369 0.202440685735197 0.206340282581385 0.20643922887293 0.208685192172013 0.207141543062514 0.212991374024161 0.202278092818808 0.215076621449442 0.207876722893091 0.205631812098675 3 3 + 7446404 7446900 7446705.455 7445763 7447357 + gene protein_coding_gene FALSE TRUE AT3G21220.1 ATMKK5 (MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5); kinase mitogen-activated kinase kinase, dual specific protein kinase, expressed in vegetative tissues and floral buds. involved in innate immunity. This protein activate MPK3/MPK6 and early-defense genes redundantly with MKK4. Identical to Mitogen-activated protein kinase kinase 5 (EC 2.7.12.2) (MAP kinase kinase 5) (AtMKK5) (AtMAP2Kalpha) (MKK5) [Arabidopsis Thaliana] (GB:Q8RXG3;GB:O80398;GB:Q96517); similar to ATMKK4 (MITOGEN-ACTIVATED PROTEIN KINASE KINASE 4), MAP kinase kinase/ kinase [Arabidopsis thaliana] (TAIR:AT1G51660.1); similar to double MYC-tagged mitogen activated protein kinase kinase 5 [synthetic construct] (GB:ABF55665.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0424395514639827 0.299722218876505 0.771672963164785 1 0.818308112166221 11.2676580641466 0.0424395514639827 0.180240675131646
AT3G08870_at 6.47775813223749 6.89608767959356 7.17785954918899 7.1946565074496 6.42997110469393 6.0517607647969 6.38917840825608 6.11055103733123 5.48333444428078 4.7835239912354 4.73661776744039 4.54590939985179 5.06408927334352 5.38008331121395 3.76230099219022 4.763900307633 4.82176708468116 5.04800498292369 4.9464088387756 0.247236014500996 0.241614758297443 0.248732923809220 0.243829397023929 0.240513197723474 0.255237555282652 0.245707788814195 0.243690938877625 0.266211307775922 0.242449896371983 0.241772512209993 0.244759800247099 0.24782694381194 0.251973895325675 0.260719299416525 0.243365003578773 0.251840109925538 0.253629514463606 0.241744471061733 3 3 - 2700514 2700967 2700761.636 2700361 2702587 - gene protein_coding_gene FALSE TRUE AT3G08870.1 lectin protein kinase, putative similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01560.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01540.1); similar to lectin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT5G01550.1); similar to receptor lectin protein kinase-like [Cucumis melo] (GB:AAU04770.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220); contains InterPro domain Legume lectin, alpha; (InterPro:IPR000985) -0.0302933921715574 -0.299575075642214 0.771781376018827 1 0.81826235287464 11.5091895136136 -0.0302933921715574 0.108894985271812
AT3G25150_at 7.98087467304196 7.61570244092127 8.00698207817847 7.73815306019232 8.5442700810828 7.98804142659367 7.840880882106 7.25182029481264 8.21547923074597 7.75456699086793 7.8253706655938 7.66853433550159 7.62619956047278 7.95824581107833 7.77271959279013 7.59050095687653 7.04158370689858 8.10922333747222 8.08495708480398 0.147858925236448 0.150001446804676 0.156218392333630 0.159640700384334 0.162908127332965 0.159435127671109 0.160694619969631 0.146519613712597 0.149971838845947 0.150525760275495 0.149316716858605 0.151618141119086 0.151544284215492 0.144487253753124 0.146039602097982 0.150204471086439 0.165291798062873 0.14956946360218 0.147974231547666 3 0|3 /|- 9157189 9157936 9157532 9156964 9159910 - gene protein_coding_gene FALSE TRUE AT3G25150.1 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein similar to nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT5G60980.2); similar to putative Ras-GTPase-activating protein binding protein 1 [Oryza sativa (japonica cultivar-group)] (GB:BAD23032.1); contains InterPro domain Nuclear transport factor 2; (InterPro:IPR002075); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0388774495771085 0.29930261430863 0.771982135274457 1 0.81817767956753 15.7295314577702 0.0388774495771085 0.160671026588221
AT3G24040_at 5.23721356524354 5.71869043191207 4.77450254852784 4.75672513913592 5.0777731558013 5.12961903430853 4.96423944363931 5.35441872935225 6.0966756945701 5.57132986442492 6.02042715154636 6.56478185464617 6.18160151782903 6.48602601984717 6.42580357911894 6.24171442680971 5.62868393500743 6.53937338514793 5.78291528729673 0.206638515070001 0.205503911202937 0.210243890938593 0.205503911202937 0.20709409049873 0.213584857656927 0.205503911202937 0.205503911202937 0.221033299299366 0.206093320180272 0.209174636415703 0.205976824480779 0.213854491665724 0.209206178329320 0.209788664819352 0.205503911202937 0.210700976673284 0.205669443290648 0.207518813334306 3 0|3 /|- 8681187 8681618 8681405.6 8680884 8683296 - gene protein_coding_gene FALSE TRUE AT3G24040.1 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT5G39990.1); similar to putative N-acetylglucosaminyltransferase [Hordeum vulgare subsp. vulgare] (GB:AAV49991.1); similar to Os12g0639700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067391.1); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) 0.0300461476100574 0.298990356365934 0.772212240387642 1 0.818080731218356 11.1656603055774 0.0300461476100574 0.107665021288804
AT3G52860_at 4.85208870215207 4.57423423887595 4.72150763859217 4.3902853774566 4.69965673793286 4.85744238313646 4.29319908211233 4.58106760723386 4.56042773009012 4.81592094778195 4.51619775473058 4.66982703528793 4.36438090595177 4.82660872902027 5.11207128278454 4.83626146104466 4.66020976168935 4.51736698439894 4.79601527435491 0.189294712702683 0.186585829742532 0.194294512433239 0.202738060149142 0.192963025349217 0.195714299071735 0.200835178179055 0.20004522189117 0.185695833114368 0.187865639066333 0.186451065415599 0.190234175570979 0.186938958545860 0.188669016386221 0.186097888597976 0.186276381222462 0.199361712823142 0.188902288750328 0.188838039138637 3 3|0 -|/ 19603029 19603692 19603436 19602826 19603744 - gene protein_coding_gene FALSE TRUE AT3G52860.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE94614.1); similar to Os05g0154900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054686.1) 0.0279098993202415 0.297842343245582 0.773058423808009 1 0.817725152148282 9.32717862432279 0.0279098993202415 0.0939410926923737
AT4G27050_at 6.04082456135938 5.69847296450182 6.05065741466772 5.59142303369201 7.0567907442071 6.13749818232529 6.7115843802843 5.88793370706651 5.71099181001722 6.32327547061882 6.01484626029795 6.24392176971808 6.19947075728266 5.9589726485507 6.07511408754789 6.20010770016358 6.03909661086724 5.99814594749934 6.29894362046037 0.188457095965875 0.190796007972904 0.186647466841200 0.200221221343661 0.198175020978383 0.196238940464475 0.193158577568113 0.192981270842319 0.202304200462282 0.191702245142177 0.189005013174204 0.191268432941789 0.200119787523127 0.202715773343324 0.199188173861265 0.186647466841200 0.196040794260221 0.203550823434578 0.186647466841200 4 4|0 -|/ 13575921 13576627 13576271 13575806 13578057 - gene protein_coding_gene FALSE TRUE AT4G27050.1|AT4G27050.2|AT4G27050.3|AT4G27050.4 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT2G29930.3); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE78248.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0522638063977447 0.296904904708387 0.773749633558032 1 0.81743578731016 12.2480380100662 0.0522638063977447 0.235481559462413
AT4G10180_at 8.82153853672582 8.85971832647208 8.96610126929807 8.79733011572064 9.18872038861315 8.75306384912534 9.226357870885 9.15782309738497 8.34372432862439 8.50878425233305 8.70058516569413 8.66838596269097 8.33730824367416 8.41794276159273 8.0832481545568 8.71756144179039 8.41403909231843 8.20931826880397 8.36456731314418 0.176165746967430 0.176165746967430 0.179382059551412 0.177940378087073 0.182346612022815 0.182713946432965 0.176947792366491 0.177777726360081 0.211218682845772 0.191048437495174 0.182481199516042 0.176165746967430 0.181487931519279 0.181817434898975 0.205760300985756 0.176445653515440 0.197112671626891 0.191512798978929 0.184557904907938 4 4 + 6348271 6349109 6348761.636 6346459 6349272 + gene protein_coding_gene FALSE TRUE AT4G10180.1 DET1 (DE-ETIOLATED 1) Encodes a nuclear-localized protein that acts as a repressor of photomorphogenesis and may be involved in chromatin remodeling. Identical to Light-mediated development protein DET1 (DEETIOLATED1 protein) (DET1) [Arabidopsis Thaliana] (GB:P48732); similar to deetiolated 1-like protein [Solanum tuberosum] (GB:AAM18188.2); similar to Light-mediated development protein DET1 (Deetiolated1 homolog) (tDET1) (High pigmentation protein 2) (Protein dark green) (GB:Q9ZNU6); similar to deetiolated 1-like protein [Capsicum annuum] (GB:AAP31020.1); contains domain FAMILY NOT NAMED (PTHR13374); contains domain SUBFAMILY NOT NAMED (PTHR13374:SF3) -0.0260994402440071 -0.295912671723912 0.774481477497113 1 0.81713048056794 17.3959519823235 -0.0260994402440071 0.0819839112348607
AT3G04940_at 7.08635039488539 7.2214731874375 6.00501125094057 6.38905140321787 7.5867158655644 7.28139579287605 7.53878707234031 7.13971858461628 6.80849031013389 7.00321734477427 7.31974617410622 7.69825189773739 7.45331543346351 7.51661106123966 7.78990150930244 7.55110697234974 7.4258706274791 7.42412142065791 7.64376028320854 0.186519721166722 0.180489563467453 0.187389337553359 0.187526460046731 0.176287482763212 0.177491839348967 0.185834513574562 0.182647979665180 0.185901708583669 0.188302939722614 0.172790241049118 0.178734513820450 0.17813042573544 0.182804754939392 0.177303099360642 0.172790241049118 0.188142124684515 0.183202271352155 0.177647025879265 3 0|3 /|+ 1366608 1367461 1367137.375 1365171 1367765 + gene protein_coding_gene FALSE TRUE AT3G04940.1 ATCYSD1 (Arabidopsis thaliana cysteine synthase D1); cysteine synthase Encodes cysteine synthase AtcysD1. similar to cysteine synthase, putative / O-acetylserine (thiol)-lyase, putative / O-acetylserine sulfhydrylase, putative [Arabidopsis thaliana] (TAIR:AT5G28030.1); similar to O-acetylserine(thiol) lyase [Brassica juncea] (GB:CAA71799.1); contains InterPro domain Pyridoxal-5' (InterPro:IPR001926); contains InterPro domain Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site; (InterPro:IPR001216); contains InterPro domain Cysteine synthase K/M; (InterPro:IPR005856); contains InterPro domain Cysteine synthase A; (InterPro:IPR005859) -0.0302478703335249 -0.294586172117926 0.775460239044636 1 0.816723882667675 14.3681570855252 -0.0302478703335249 0.111914467451173
AT1G30580_at 9.90323141557826 9.92043026144589 9.97493377833997 10.0593249592988 9.92418161271378 9.78511646963526 9.9403107310551 9.9064872181878 9.15191408227372 9.57861350282973 9.4179084862585 9.52306742150756 9.38148028020137 9.14417931545087 9.55665637130521 9.33108054608192 9.4387756573274 9.25675163105109 9.34342235115824 0.106768319753388 0.104926793619055 0.104342724122170 0.106080461207231 0.107657594240862 0.104342724122170 0.108619121990995 0.104389843762178 0.119898440607402 0.107051001002890 0.113925035246820 0.104342724122170 0.107302368965259 0.113361841002543 0.108933504382956 0.109528542598421 0.115798312817717 0.108462501281159 0.110136280518478 1 1|0 -|/ 10831947 10833748 10832976 10831655 10835520 - gene protein_coding_gene FALSE TRUE AT1G30580.1 GTP binding similar to GTP-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G56050.1); similar to GTP-binding protein [Capsicum annuum] (GB:AAF65513.1); similar to putative GTP-binding protein [Oryza sativa (japonica cultivar-group)] (GB:BAD03576.1); similar to Os08g0199300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061206.1); contains InterPro domain GTP-binding protein, HSR1-related; (InterPro:IPR002917); contains InterPro domain GTP1/OBG; (InterPro:IPR006073); contains InterPro domain Protein of unknown function DUF933; (InterPro:IPR013029); contains InterPro domain Conserved hypothetical protein 92; (InterPro:IPR004396); contains InterPro domain TGS-like; (InterPro:IPR012676) 0.0207642249954749 0.294351907335427 0.775633136058836 1 0.816652261623946 19.2963624436495 0.0207642249954749 0.0289062502836388
AT2G43850_at 6.9070659110233 6.92749336968365 6.96171125481013 6.64492602591021 7.67568558670899 6.79926801704533 6.86199752966763 5.42961785378806 5.65418376596317 6.06325332064978 5.25084866770299 5.14026513477137 4.7976157024229 5.55320265350943 4.54934274734886 5.13320300496055 5.37187210451783 4.61096861076318 5.2786216435904 0.246675196489135 0.246824203132791 0.252062882422423 0.261638403282465 0.255137814987529 0.261305165137078 0.240684594901798 0.244112386348921 0.261000330052041 0.242930881968336 0.245635548727046 0.240684594901798 0.251471003216836 0.248675408421902 0.246438581099876 0.241175080312844 0.247781241740108 0.240684594901798 0.243292030178319 2 2|0 -|/ 18166758 18167676 18167099.222 18166259 18169121 - gene protein_coding_gene FALSE TRUE AT2G43850.1|AT2G43850.2 ankyrin protein kinase, putative (APK1) similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G59830.1); similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G31800.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06432.1); similar to ankyrin-kinase [Medicago truncatula] (GB:AAL78674.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06433.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271)|similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT3G59830.1); similar to ankyrin protein kinase, putative [Arabidopsis thaliana] (TAIR:AT2G31800.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06432.1); similar to ankyrin-kinase [Medicago truncatula] (GB:AAL78674.1); similar to flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct] (GB:ABK06433.1) -0.0627920133700713 -0.292032975476916 0.777345313721895 1 0.815946309113056 12.1341045627384 -0.0627920133700713 0.295745785437496
AT4G21860_at 10.5651615956698 10.6187032527030 10.6508004402597 10.6998451107665 10.9561623948943 10.6103813624400 11.2365393283969 11.3524097802259 10.7227438362745 10.8175351641442 10.9566411942446 10.9506834547583 10.8655361484155 11.0723984849653 11.0252784312020 11.1256467204280 10.6831370162358 11.0703349728514 10.5824171368932 0.0799852912792649 0.0778813392068404 0.0773785266366156 0.0788775744245087 0.0783069360374087 0.0801717141033227 0.0793569531731503 0.0785851363484032 0.084869792182707 0.0773396319800022 0.0796995388827707 0.0789093231157685 0.0773396319800022 0.0773396319800022 0.0788325709096075 0.0783335176213823 0.0848823074649038 0.0794648543649126 0.0782803741051337 4 4 - 11600270 11601476 11600932.727 11600017 11601580 - gene protein_coding_gene FALSE TRUE AT4G21860.1|AT4G21860.2 methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein|protein-methionine-S-oxide reductase similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04800.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057)|similar to methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G04830.1); similar to Mss4-like [Medicago truncatula] (GB:ABE84787.1); contains InterPro domain Methionine sulfoxide reductase B; (InterPro:IPR002579); contains InterPro domain Mss4-like; (InterPro:IPR011057) 0.0236177558124129 0.291817544093391 0.777504442328578 1 0.815881002708263 21.6743866241653 0.0236177558124129 0.0643480847188938
AT1G18680_at 5.18103914869674 4.89076801355413 4.3696656353112 4.56744147320781 4.90265151118604 5.43257703945605 4.32140315518621 4.65131309296134 4.98083691523607 4.37717642332972 5.2017306802609 4.38475260879224 4.30196235394361 5.22073237112092 4.46799324169965 4.72244614582146 4.3182787963523 4.32419512818216 4.8558647871562 0.230822921156979 0.229140329800043 0.23326564493115 0.228613336594088 0.228613336594088 0.230788450878508 0.228613336594088 0.228724011131208 0.248976012000674 0.242897297104101 0.228996585964772 0.231721276966693 0.230805656307251 0.241066511112926 0.231572261442058 0.232177024966019 0.239645613770634 0.240685104310353 0.239039708528468 1 1 - 6432129 6433328 6432919 6431930 6433456 - gene protein_coding_gene FALSE TRUE AT1G18680.1 HNH endonuclease domain-containing protein similar to HNH endonuclease domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G47490.1); similar to HNH endonuclease family protein [Tetrahymena thermophila SB210] (GB:XP_001023127.1); similar to Os03g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049103.1); similar to Os10g0335200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064372.1); contains InterPro domain HNH endonuclease; (InterPro:IPR002711) -0.0316224486391696 -0.289940259266448 0.778891568933759 1 0.81531391446147 9.4674677792011 -0.0316224486391696 0.123952841280705
AT1G06780_at 6.5930699425236 6.8833972085296 6.92819696816339 6.86282666567853 6.98436122234705 6.64342635768824 6.10927128091517 6.10949858795147 5.97854852156532 6.42234622346724 6.16662113995235 6.40882500812252 5.89780118176018 6.34207195963162 5.4609393733067 6.2555430770616 5.74316148342759 5.31836268492724 6.58871980131716 0.240449534147298 0.23526447365273 0.23022178191568 0.235137488109391 0.229442180685085 0.249230056515559 0.239661374875790 0.230075904826776 0.251259866700385 0.234987795417012 0.240793069168014 0.233261694814067 0.239862850709651 0.245127270546651 0.232057294698695 0.229964677201386 0.235565469657119 0.240736589382909 0.237665188800496 1 1 + 2085922 2086828 2086507.909 2083423 2086961 + gene protein_coding_gene FALSE TRUE AT1G06780.1 GAUT6 (Galacturonosyltransferase 6); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups Encodes a protein with putative galacturonosyltransferase activity. similar to GAUT5/LGT5 (Galacturonosyltransferase 5), polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT2G30575.1); similar to Glycosyl transferase family 8 protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94533.1); contains InterPro domain Glycosyl transferase, family 8; (InterPro:IPR002495) 0.0250938857815817 0.289775366428931 0.7790134483733 1 0.815264274965672 12.7787746562114 0.0250938857815817 0.0783155686014542
AT2G31960_at 8.419930516614 8.07374628201184 8.47580997389127 8.39671529617923 9.14778089841839 8.38904473654628 8.74129743181817 8.52775670195301 8.04158056173857 8.34193849259519 8.25416547848562 8.1088535064922 8.12486208284249 8.26456935546356 7.81169457244516 8.49128545545898 8.34058921391268 8.38130059527808 8.55392686127005 0.169991812600696 0.172747569835219 0.173079100136221 0.171332892783385 0.177292029055215 0.183019759289434 0.177300341592287 0.170429279343862 0.214473864442649 0.187461100782846 0.183947805502776 0.174101773221846 0.177013092125925 0.169012248248388 0.184034084428217 0.168013679757622 0.183273021884773 0.173350296137252 0.176176016947869 2 2 + 13606248 13606978 13606605.909 13596622 13607143 + gene protein_coding_gene FALSE TRUE AT2G31960.1 ATGSL03 (GLUCAN SYNTHASE-LIKE 3); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups encodes a protein similar to callose synthase similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL12 (GLUCAN SYNTHASE-LIKE 12), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT5G13000.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD23015.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93351.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD62105.1) 0.0356690269194762 0.288957430160382 0.779618115829377 1 0.815018451351228 16.7888337318867 0.0356690269194762 0.149607703488852
AT3G50370_at 7.15465098650438 6.93854174142655 6.35339862207968 6.40493226998301 6.51066206362958 6.71343611616206 5.36197613318452 6.8290352113832 7.03161366916884 6.3199213350941 6.79759840867478 6.92909439972801 7.14620727506323 7.20623689584446 6.48053653126178 7.30201530907426 6.89387741296095 6.11300626550171 6.666612462386 0.173610108470666 0.171948981800424 0.177294111277371 0.188034249616357 0.174479660580398 0.174859338894484 0.171700997157316 0.173967826583142 0.177833916778472 0.174468496400223 0.170985100452509 0.165886600890710 0.171931989578988 0.179931596715649 0.182202546126994 0.170091456111333 0.169259653326192 0.171813832221461 0.176553342529600 3 3 - 18687457 18688087 18687794.364 18687041 18695327 - gene protein_coding_gene FALSE TRUE AT3G50370.1 similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK52550.1) 0.0552059949431283 0.288705942404051 0.779804062486102 1 0.814943005642012 13.2989728352841 0.0552059949431283 0.25916278289612
AT4G24560_at 7.80493113682086 7.96085553097045 8.05827782343784 7.7694516789412 8.18829407579829 8.14652144108382 7.60608243659866 7.71964061580188 7.35910465090277 7.34101194597056 7.27471776054878 7.30690094737962 7.14010223382842 6.68156103751616 7.15564152197547 7.56805596625313 6.84202311213306 7.25432822445042 7.42571921460025 0.190981059043456 0.190981059043456 0.204540889474526 0.198560406825999 0.194390816351305 0.202852506389302 0.194465549350989 0.205711132933144 0.206006978896660 0.197742842630284 0.206463311666996 0.194123444200204 0.198914087076918 0.209251243652417 0.195008904731436 0.190981059043456 0.219659343914845 0.200119947892228 0.190981059043456 4 0|4 /|- 12679519 12679964 12679751.7 12679220 12684949 - gene protein_coding_gene FALSE TRUE AT4G24560.1 UBP16 (UBIQUITIN-SPECIFIC PROTEASE 16); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to ubiquitin carboxyl-terminal hydrolase family protein / zinc finger (MYND type) family protein [Arabidopsis thaliana] (TAIR:AT5G65450.1); similar to Os08g0478500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062051.1); similar to putative ubiquitin-specific protease [Oryza sativa (japonica cultivar-group)] (GB:BAD33960.1); similar to Os09g0464400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063411.1); contains InterPro domain Zinc finger, MYND-type; (InterPro:IPR002893); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.0226982857267177 0.285437756639756 0.782221871236656 1 0.813968408342652 15.1708543195992 0.0226982857267177 0.0605378190243071
AT4G03560_at 10.4638884145318 10.4442695352273 10.2188756366109 10.2024796610502 10.7265345842289 10.5603523779029 10.3812387737299 10.4270652996175 10.6379801811015 10.5811421773549 10.7982665770411 10.7553391824867 10.8953550307421 10.7530041878939 10.5817714294579 10.5739210356059 10.4339402852859 10.496738438879 10.6373529345492 0.070249776893863 0.068391366602059 0.0708136880143407 0.0692515301856625 0.0705983260581213 0.0687758951356476 0.0680634090717419 0.0712589190811946 0.0745151268120295 0.0687313221575258 0.0678814145958093 0.0674789305196988 0.0674789305196988 0.0700336872014008 0.0680660672331336 0.0680127301093837 0.0753464470389173 0.0738741648027597 0.0682478550348276 4 4|0 +|/ 1584241 1585621 1584783.714 1580140 1585964 + gene protein_coding_gene FALSE TRUE AT4G03560.1 ATTPC1 (TWO-PORE CHANNEL 1); calcium channel/ voltage-gated calcium channel Encodes a depolarization-activated Ca(2+) channel. Anti-sense experiments with this gene as well as Sucrose-H(+) symporters and complementation of yeast sucrose uptake mutant cch1 suggest that this protein mediates a voltage-activated Ca(2+ )influx. Mutants lack detectable SV channel activity suggesting TPC1 is essential component of the SV channel. similar to calcium channel [Oryza sativa (japonica cultivar-group)] (GB:BAC80148.1); similar to two-pore calcium channel [Nicotiana tabacum] (GB:BAD15099.1); similar to two-pore calcium channel [Nicotiana tabacum] (GB:BAD15100.1); contains InterPro domain Ca2+/Na+ channel, pore region; (InterPro:IPR001682); contains InterPro domain Cation (not K+) channel, TM region; (InterPro:IPR002111); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Ion transport; (InterPro:IPR005821); contains InterPro domain Cation channel, non-ligand gated; (InterPro:IPR005820) 0.020080991213576 0.283664351745714 0.783534887258033 1 0.813444114842603 21.0680215946587 0.020080991213576 0.0301583811018042
AT4G27520_at 9.32445964583006 9.44491371089957 9.2584579089486 9.2815683236789 9.39854292810436 9.17867541545638 10.7686775235069 10.8106419566098 8.97781405405889 9.15395134653748 9.4519260999945 10.0076853017588 9.7090392496925 9.70108337775654 10.0133838081436 9.57471213779775 9.7271017739941 9.68796484835142 8.7732569968095 0.124775342655082 0.115047460141782 0.118860057927351 0.117464233053770 0.112895149115808 0.117987288844103 0.126405094624247 0.118098028343690 0.124015884445243 0.128977823797063 0.116592924720432 0.114455549085349 0.118922364794319 0.114686168429830 0.117799375705839 0.114717102898781 0.121279376751688 0.121392990165957 0.136057313817677 4 4 - 13750677 13751248 13750970.818 13750446 13751911 - gene protein_coding_gene FALSE TRUE AT4G27520.1 plastocyanin-like domain-containing protein Identical to Early nodulin-like protein 2 precursor (Phytocyanin-like protein) [Arabidopsis Thaliana] (GB:Q9T076;GB:Q5PNT5;GB:Q8LBE5); similar to plastocyanin-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G53870.1); similar to putative early nodulin-like 2 predicted GPI-anchored protein [Trifolium pratense] (GB:BAE71287.1); contains InterPro domain Cupredoxin; (InterPro:IPR008972); contains InterPro domain Plastocyanin-like; (InterPro:IPR003245) -0.0210453948068381 -0.283585417335176 0.78359334677268 1 0.813420852912094 19.0344686135400 -0.0210453948068381 0.0441699815869104
AT3G04480_at 7.1919323434075 7.4193141100675 7.31433563382939 7.28539879542337 6.6965347046407 6.41002543343762 6.48498394353422 6.94940914228633 7.16403536902523 6.44891554127334 6.54047761940534 7.06989606874478 6.65322167476616 7.09949370350416 6.48183372176554 6.98313047090821 6.51610409741945 7.35266216430644 6.47743049417698 0.189898760006423 0.189318592532895 0.187028980643770 0.194906147966105 0.186956828462151 0.191406559492417 0.187292841967983 0.179669966463435 0.207314279419071 0.192800795838005 0.191490505961494 0.180613091958607 0.189644564143577 0.196127588579629 0.18930416659606 0.181934216843062 0.196098663548885 0.181269619443748 0.187579485886269 3 3|0 -|/ 1194002 1194724 1194298.9 1193636 1197403 - gene protein_coding_gene FALSE TRUE AT3G04480.1 endoribonuclease similar to endoribonuclease L-PSP family protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD21586.1); contains InterPro domain Protein of unknown function DUF71, ATP-binding region; (InterPro:IPR002761); contains InterPro domain Endoribonuclease L-PSP; (InterPro:IPR006175) 0.0277361978097761 0.283457014283501 0.783688446294308 1 0.813383026150744 13.7359398841255 0.0277361978097761 0.102427039145778
AFFX-r2-Bs-phe-3_at 3.79048526067259 4.26316074224304 5.29980252584314 4.10610360460015 6.5208595132972 4.48348146397313 6.4411909293992 4.56033660098398 6.9805873051207 7.61589076101657 6.958110331332 7.50048820057054 6.75273910520701 7.3138959899199 6.6252659426204 7.24757009250245 6.3815435693786 5.92054484241386 7.5617720905516 0.233533415207786 0.224167039475471 0.224572774579968 0.231409143699322 0.221235488057674 0.22442002865281 0.226067453629175 0.232175557585195 0.238062649888511 0.224652821638891 0.225280439551453 0.227832253267842 0.227949505597381 0.222817095547381 0.222333409598861 0.222731935398062 0.24028330358771 0.237141338496754 0.226201294508189 NA NA NA NA NA FALSE FALSE -0.104897616358078 -0.282638924936346 0.784294440192095 1 0.813142416182141 12.0449791525296 -0.104897616358078 0.528790649982601
AT3G21280_at 6.10978630599256 5.90064738506143 5.58257989146937 5.33863386148099 5.84855684333347 5.70203917431498 5.63502410130951 5.7239676962738 5.77509033763562 5.67856284526195 5.91581448674846 6.27789468474285 6.08207375627272 6.18359948797474 6.16311587080729 6.22325250644616 5.7763539927282 5.64086466054235 5.83544565815429 0.173930905484297 0.177073268360493 0.179964479671239 0.177408386063830 0.173063539627257 0.180188393170671 0.180061069387145 0.179873723428081 0.177868445349015 0.180203850235075 0.169509270390527 0.175085104834211 0.174189001209742 0.175261105464493 0.172902399576690 0.172343163538031 0.174810404202648 0.179455654594901 0.175660831091736 3 3|0 -|/ 7478182 7479526 7478634.7 7477993 7482076 - gene protein_coding_gene FALSE TRUE AT3G21280.1 UBP7 (UBIQUITIN-SPECIFIC PROTEASE 7); ubiquitin-specific protease Encodes a ubiquitin-specific protease. similar to UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6), ubiquitin-specific protease [Arabidopsis thaliana] (TAIR:AT1G51710.1); similar to ubiquitin specific protease 14 [Danio rerio] (GB:NP_956267.1); similar to Os01g0550100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043299.1); contains InterPro domain Ubiquitin; (InterPro:IPR000626); contains InterPro domain Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2; (InterPro:IPR001394) 0.0227171521279677 0.282427915323821 0.784450769287752 1 0.813080466262274 11.6281064713046 0.0227171521279677 0.063023064529521
AT2G37080_at 6.3316610289095 6.40816817297714 6.22877141678062 6.18914877130476 6.6246220810735 6.40420126066818 5.56321350251502 5.59006467963944 5.80061737759616 5.18491256503357 5.1557637450208 5.56865969968354 5.40651482505032 5.21804347885959 5.22265611815574 4.9163707842215 4.73415579647144 5.04662577746968 5.53116414265389 0.186673622814324 0.177309070186293 0.196015999150375 0.180529057235587 0.178715783543441 0.188609245657715 0.184655500118145 0.177309070186293 0.185976683380491 0.187406537838741 0.18260241513597 0.184553467621275 0.182416214765598 0.186913754735494 0.181475596028402 0.182850562948599 0.17801483963022 0.194231710604393 0.177309070186293 2 2 - 15588725 15589170 15588892.364 15588465 15592265 - gene protein_coding_gene FALSE TRUE AT2G37080.1 myosin heavy chain-related similar to cytoplasmic linker protein-related [Arabidopsis thaliana] (TAIR:AT5G60210.1); similar to P70 protein [Nicotiana tabacum] (GB:CAC84774.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) 0.0207215597342636 0.282315299864217 0.784534206078836 1 0.81304742225587 11.4995631008391 0.0207215597342636 0.0412181265890948
AT3G63400_at 5.87531724859288 5.41790467725874 5.43797489412388 5.73697012611121 4.71692277955974 5.22274640388661 4.77975447358512 4.91508866435065 4.16914025155914 4.40208590053055 4.02307672845161 4.50344945053883 4.37438850852862 4.25237221638727 3.8389128411232 4.78451622260577 4.7273045190779 4.0504713310656 4.6723448861653 0.210652438808215 0.198974052485569 0.202707620339735 0.202029792614304 0.199280169252698 0.196830231879869 0.200584638492941 0.212038391192652 0.199467009497143 0.19613741648194 0.195897563212112 0.197379953535389 0.19611951124974 0.206200554748537 0.195897563212112 0.195897563212112 0.220182955156677 0.204037987931407 0.198575793396215 3 3 + 23425597 23426383 23425986.727 23422998 23426634 + gene protein_coding_gene FALSE TRUE AT3G63400.1|AT3G63400.2 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein [Arabidopsis thaliana] (TAIR:AT4G32420.1); similar to cyclophilin-like protein [Triticum aestivum] (GB:AAP44536.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130) -0.0317874586112337 -0.28154083640988 0.785108085626377 1 0.812820526424603 9.62975248675394 -0.0317874586112337 0.130973606296213
ATCG00140_at 11.9724776841311 12.5853293992192 12.4380013507003 12.5225584115502 11.5915561441211 11.6602093481322 11.8671988605751 12.5574263779311 12.9191484692005 12.9411926261943 13.1618137180666 13.5177811428652 13.1471615881133 13.1401270251320 12.5861135232614 13.1295907799915 12.5794351675033 12.9508969992338 12.8605242863376 0.081961350235095 0.0794578575842583 0.0817561103135034 0.0829128453523685 0.0807492395506314 0.0867937832836376 0.0834534772762455 0.0826341397719379 0.0903530548127996 0.0794578575842583 0.0814592412361022 0.0794578575842583 0.0802198474611289 0.0833209401559548 0.0846840809484588 0.0794578575842583 0.0821334124196946 0.087037582342859 0.0801365815696518 C C - 13271 13460 13364.455 13262 13507 - gene protein_coding_gene FALSE TRUE ATCG00140.1 ATPase III subunit Identical to ATP synthase C chain (EC 3.6.3.14) (Lipid-binding protein) (ATPase subunit III) (atpH) [Arabidopsis Thaliana] (GB:P56760); similar to ATP synthase CF0 C chain [Nicotiana tabacum] (GB:NP_054483.1); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0 complex, subunit C, bacterial and chloroplast; (InterPro:IPR005953); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379); contains InterPro domain ATPase, F0 complex, subunit C; (InterPro:IPR000454) -0.0364334505307227 -0.280266733881487 0.786052500805023 1 0.812448579813418 25.1161297571775 -0.0364334505307227 0.160844456985264
AT1G24490_at 7.49095969397982 7.66733058776125 8.03285522125827 7.91125522604195 7.94748808782473 7.8511354545747 8.11020870838559 8.28480538848874 6.63273698705321 7.46373389085595 6.73064379424726 6.82476385302372 7.28319734548285 6.74232181198158 6.69711260472923 7.48318790826436 7.55378689249133 6.5779171154216 7.13347210127043 0.190951359626198 0.187110049357972 0.195428942581832 0.190152528548292 0.187890987843665 0.189844108478368 0.187312792299317 0.191639202571548 0.207168594183853 0.193926308275634 0.194484402585619 0.192286501138466 0.189779119401839 0.196414178615699 0.189697618803234 0.187110049357972 0.197117098087261 0.190032934070751 0.195119631917008 1 1 + 8684200 8684892 8684511.636 8678846 8685262 + gene protein_coding_gene FALSE TRUE AT1G24490.1 ALB4 (ALBINA 4) Homologue of the Alb3/Oxa1/YidC family. ALB4 is almost identical to the Alb3/Oxa1/YidC domain of the previously described 110 kDa inner envelope protein ARTEMIS. However, ALB4 is expressed as a separate 55 kDa protein and is located in the thylakoid membrane of chloroplasts. Analysis of a T-DNA insertion line with a reduced level of Alb4 revealed chloroplasts with an altered ultrastructure. Mutant plastids are larger, more spherical in appearance and the grana stacks within the mutant lines are less appressed than in the wild-type chloroplasts. ALB4 is required for proper chloroplast biogenesis. Identical to Protein ARTEMIS, chloroplast precursor (Arabidopsis thaliana envelope membrane integrase) (Ath4) (ALBINO3-like protein 1) (ART1) [Arabidopsis Thaliana] (GB:Q9FYL3;GB:Q9FYL4); similar to ALB3 (ALBINO 3), protein translocase [Arabidopsis thaliana] (TAIR:AT2G28800.1); similar to 60 kDa inner membrane insertion protein [Medicago truncatula] (GB:ABE84634.1); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708) -0.0213369206251117 -0.280167820720294 0.786125834814394 1 0.812419773437883 14.9436368337553 -0.0213369206251117 0.0506494909623457
AT1G61690_at 5.79152695244408 5.4442725458682 5.35426197350854 5.67425655988946 5.42955945309881 5.4717950161802 4.39251966583336 4.86843167523517 5.46237637881226 4.92559461273426 5.15161020428593 4.80295073140196 4.23930437336619 4.66353182889992 4.70766589350117 5.05821184212278 4.67766815560962 5.0862345206557 4.90575576137561 0.258390744624445 0.254094885185193 0.252202312059328 0.249951644218098 0.247005607385097 0.258256096352191 0.2451396748626 0.253630933466689 0.248265548853034 0.245207192279576 0.2451396748626 0.247515906713135 0.247154829764945 0.248078557480318 0.248313018785496 0.2451396748626 0.258351267183977 0.2451396748626 0.246211475551585 1 1 - 22786532 22787022 22786798.909 22786272 22790524 - gene protein_coding_gene FALSE TRUE AT1G61690.1 binding / zinc ion binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44653.1); similar to FYVE zinc finger containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAT85295.1); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain Zinc finger, FYVE-type; (InterPro:IPR000306) 0.0293844084568756 0.279988685341934 0.786258651141478 1 0.812367629404478 10.2514810359428 0.0293844084568756 0.116250781575923
AT1G42540_at 7.1790810534561 7.38772532915764 7.33703773879733 7.094696893779 7.45763906459784 7.35854982326827 7.72383393641838 7.58912763812904 6.40221657453338 6.80408644365061 6.18979724998965 6.62943350257825 6.6827925595141 6.56316873287279 6.49677522254134 7.22387960322952 7.18993030456643 6.34722223946207 6.4506609290762 0.205936835982489 0.201172305657055 0.203924759716605 0.201269504173507 0.196093267980544 0.213603690939017 0.200925320158927 0.202527500161752 0.223725236567361 0.205004007088657 0.203049811363580 0.202448765585158 0.196530337778178 0.204225426744571 0.209657710255336 0.198382817342380 0.211970968607022 0.209313653712858 0.217324615074176 1 1|0 +|/ 15978489 15978974 15978774.5 15975929 15979143 + gene protein_coding_gene FALSE TRUE AT1G42540.1 ATGLR3.3 (Arabidopsis thaliana glutamate receptor 3.3) member of Putative ligand-gated ion channel subunit family Identical to Glutamate receptor 3.3 precursor (Ligand-gated ion channel 3.3) (GLR3.3) [Arabidopsis Thaliana] (GB:Q9C8E7); similar to GLR2 (GLUTAMATE RECEPTOR 2) [Arabidopsis thaliana] (TAIR:AT2G17260.1); similar to GLUR2 (Glutamate receptor 2) [Arabidopsis thaliana] (TAIR:AT4G35290.1); similar to ATGLR3.6 (Arabidopsis thaliana glutamate receptor 3.6) [Arabidopsis thaliana] (TAIR:AT3G51480.1); similar to H0307D04.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66856.1); similar to Glutamate receptor 3.1 precursor (Ligand-gated ion channel 3.1) (GB:Q7XP59); similar to Ionotropic glutamate receptor; Extracellular ligand-binding receptor [Medicago truncatula] (GB:ABE83251.1); contains InterPro domain Extracellular ligand-binding receptor; (InterPro:IPR001828); contains InterPro domain Solute-binding protein/glutamate receptor; (InterPro:IPR001311); contains InterPro domain Metabotropic gamma-aminobutyric acid receptor, type B; (InterPro:IPR002455); contains InterPro domain Ionotropic glutamate receptor; (InterPro:IPR001320) -0.0224537490444034 -0.279894938766166 0.786328160600809 1 0.812340353999372 13.9998095559993 -0.0224537490444034 0.0624499551760623
AT4G14340_at 6.53163729510399 6.21767945483036 6.48895445083563 6.2836973658019 6.57868557144063 6.5982820097687 5.98056231599995 6.16619481537932 5.60774270993268 6.23825783236644 5.87181310339062 5.58629751197483 6.00939137456295 5.60078545487895 5.74778518924484 5.9827040177838 5.7042873059638 5.82327048312207 6.45768631551434 0.193327043546501 0.190911860681796 0.193114930798002 0.192014568039931 0.185284606754040 0.203732501967602 0.189715565313839 0.197548500240354 0.192192828583292 0.192128842689649 0.19407775367574 0.190432026355885 0.188763753423143 0.207205046065824 0.186960228490900 0.189413124766926 0.217183639590365 0.199232075366749 0.187162817211111 4 4|0 -|/ 8248539 8249455 8248768.667 8248282 8251994 - gene protein_coding_gene FALSE TRUE AT4G14340.1 CKI1 (CASEIN KINASE I); casein kinase I/ kinase Phosphorylates serine or threonine residues that are near and C-terminal to acidic side chains on a variety of target proteins similar to CKL10 (Casein Kinase I-like 10), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT3G23340.1); similar to CKL13 (CASEIN KINASE LIKE 13), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT1G04440.1); similar to CKL8 (Casein Kinase I-like 8), casein kinase I/ kinase [Arabidopsis thaliana] (TAIR:AT5G43320.1); similar to Os02g0810400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048470.1); similar to Os02g0622100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047465.1); similar to putative casein kinase I [Oryza sativa (japonica cultivar-group)] (GB:CAD32377.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0235253841779728 -0.279551402788803 0.78658289651651 1 0.812240479329968 12.3017220387549 -0.0235253841779728 0.0725062780855454
AT2G36910_at 9.62398580139896 9.8567875817211 9.5634728260928 9.52780178195477 9.73686340007169 9.90133957825267 9.8184219041917 10.0416604600435 10.3851293616578 10.2204028518276 10.7891209555914 10.5272072844341 10.4657632159668 10.3789601664907 10.4270613976533 10.4674797314472 9.7730312582071 10.4944556878156 10.3166391534024 0.0881999015469598 0.0845263317008089 0.0871095683413963 0.0904524274016339 0.0913268247778703 0.0865168592221628 0.083282300402721 0.0860927867074698 0.0920746892495993 0.0837924908180735 0.0844531986425835 0.082637134511636 0.0839143967254477 0.0919761707960368 0.0871919623870757 0.0829497873335778 0.101701375112000 0.0855599808445534 0.082637134511636 2 2 + 15513569 15514019 15513786.636 15509093 15514399 + gene protein_coding_gene FALSE TRUE AT2G36910.1 ATPGP1 (ARABIDOPSIS THALIANA P GLYCOPROTEIN1); calmodulin binding Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AT3G28860. PGP1 mediates cellular efflux of IAA and interacts with PIN genes that may confer an accelerated vectoral component to PGP-mediated transport. The non-polar localization of PGP1 at root and shoot apices, where IAA gradient-driven transport is impaired, may be required to confer directionality to auxin transport in those tissues. Identical to Multidrug resistance protein 1 (P-glycoprotein 1) (AtPgp1) (MDR1) [Arabidopsis Thaliana] (GB:Q9ZR72;GB:Q8L6X6); similar to PGP13 (P-GLYCOPROTEIN 13), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G27940.1); similar to ATMDR11/ATPGP19/MDR1/MDR11/PGP19 (P-GLYCOPROTEIN 19), ATPase, coupled to transmembrane movement of substances / auxin efflux transporter [Arabidopsis thaliana] (TAIR:AT3G28860.1); similar to PGP14 (P-GLYCOPROTEIN 14), ATPase, coupled to transmembrane movement of substances [Arabidopsis thaliana] (TAIR:AT1G28010.1); similar to ABC transporter-like protein [Brassica rapa] (GB:ABB97035.1); similar to P-glycoprotein [Solanum tuberosum] (GB:AAD10836.1); similar to P-glycoprotein 1 [Sorghum bicolor] (GB:AAR10387.1); contains InterPro domain ABC transporter, transmembrane region, type 1; (InterPro:IPR011527); contains InterPro domain ABC transporter, transmembrane region; (InterPro:IPR001140); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0224250168371682 -0.278879045730741 0.787081535550324 1 0.812045355999692 20.1201793756309 -0.0224250168371682 0.062958837012664
AT4G31750_at 5.31184146856146 5.83448755144277 5.58263610202315 5.67591661619434 5.97263350252209 5.2962101690374 5.70175908314548 5.99531809324766 4.42120662261369 5.07493053273169 5.07775829509333 5.21571866882508 4.66238132468037 5.37750524958964 4.70763086339195 4.91212723394366 5.20301688681689 5.01249852487822 5.11623665163215 0.234092186896493 0.225601527588331 0.226518893625734 0.231291866353991 0.249544494175708 0.237602774707781 0.228964363069464 0.225601527588331 0.230589242610626 0.225601527588331 0.23148098265181 0.230916888638453 0.233609091143568 0.231541103881706 0.240977814509716 0.231203321922818 0.244883928937698 0.234518433386818 0.230453256259382 4 0|4 /|- 15364674 15365326 15364905.75 15364424 15367722 - gene protein_coding_gene FALSE TRUE AT4G31750.1 protein phosphatase 2C, putative / PP2C, putative similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT5G24940.1); similar to protein phosphatase 2C [Mesembryanthemum crystallinum] (GB:BAB88944.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0356429551273938 0.278725041897994 0.78719576375561 1 0.812000727716885 10.6172857732192 0.0356429551273938 0.157240480707285
AT3G54670_at 6.6830607721728 7.08898334338271 6.94179685812955 6.39541188109223 7.18020551651411 6.59295249558843 6.3119547898457 6.40149287609233 5.53203389137319 6.143541225916 5.74145603316233 6.18786246740652 5.69307933466498 5.78459123444343 5.82699160292902 5.81159633283397 5.28207660862386 5.57505154776709 6.21936760287827 0.214320785797113 0.214407367222053 0.210372120983514 0.205151633841394 0.207221919146115 0.219881925874198 0.206775015246667 0.205401256247561 0.224614114804832 0.210028762629140 0.206551382735309 0.211996631786028 0.202518557753192 0.213649371932982 0.202127666422876 0.209817213834523 0.207937624314175 0.218127448418984 0.205239247693530 3 3 + 20253683 20254491 20254011.364 20246656 20254938 + gene protein_coding_gene FALSE TRUE AT3G54670.1|AT3G54670.2 TTN8 (TITAN8); ATP binding cohesin similar to ATSMC3 (Arabidopsis thaliana structural maintenance of chromosome 3), ATP binding [Arabidopsis thaliana] (TAIR:AT5G48600.1); similar to SMC1 protein [Oryza sativa] (GB:CAD59409.1); similar to mitosis-specific chromosome segregation protein SMC1 homolog [Takifugu rubripes] (GB:AAC15582.1); similar to Smc1l1 protein [Xenopus laevis] (GB:AAH46691.1); contains InterPro domain SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain ABC transporter related; (InterPro:IPR003439); contains InterPro domain SMCs flexible hinge; (InterPro:IPR010935)|similar to ATSMC3 (Arabidopsis thaliana structural maintenance of chromosome 3), ATP binding [Arabidopsis thaliana] (TAIR:AT5G48600.1); similar to SMC1 protein [Oryza sativa] (GB:CAD59409.1); contains InterPro domain SMC protein, N-terminal; (InterPro:IPR003395); contains InterPro domain ABC transporter related; (InterPro:IPR003439) -0.0354620095179432 -0.278452932237707 0.78739760707351 1 0.811921933006665 12.5508918425779 -0.0354620095179432 0.156343454126286
AT3G08610_at 11.7423712551289 11.6337274723255 11.7164254972302 11.6965605315991 11.7513140888791 11.3616400563866 11.7065520907579 11.8140356289547 11.7752578919407 11.7367958428511 11.7651053572248 11.8618432884425 11.6772513772507 11.7694298453553 12.0067252207846 11.6325907284222 11.4206144413617 11.9225386850083 11.621500154579 0.0695701274497946 0.069799261230244 0.0712776870174674 0.0724302126066152 0.0711176856957728 0.0724920260582741 0.0730132096757805 0.0703770224507975 0.0742445795450608 0.0691787486232427 0.0690566143589663 0.0691527476811286 0.0690566143589663 0.071548591950077 0.0732043440033292 0.0691219480756293 0.0742865383256236 0.0699649197416392 0.0701193604298836 3 3|0 -|/ 2616455 2616739 2616629.556 2615432 2616809 - gene protein_coding_gene FALSE TRUE AT3G08610.1 similar to hypothetical protein MtrDRAFT_AC136139g5v1 [Medicago truncatula] (GB:ABE93033.1) -0.0234294150384846 -0.278396088758322 0.787439774114857 1 0.811905482386883 23.4119268265435 -0.0234294150384846 0.07251726601716
AT2G16070_at 9.22684290315408 9.4844857410638 9.89557217051118 10.003753935821 10.0447863543343 9.93231602789657 10.4011598308492 10.3485379084382 10.0968506143119 10.0286118583087 9.99055529116374 9.81272291845045 9.78851133381744 9.97119480124138 9.65047457512845 10.1226777961777 9.97015705542881 9.86538814699205 10.0037097806055 0.0939291254097265 0.0962352607998998 0.0977671644832728 0.0939557497805301 0.0962883506969018 0.098570239991566 0.0983093510890667 0.0967347015939424 0.106784797909600 0.0988059773799489 0.0973310292166208 0.0957509736090898 0.0939160122587634 0.0986921439758319 0.103498211945908 0.0950586873552706 0.101563249768927 0.103145923886393 0.097033297100436 2 2 - 6991292 6991653 6991450.273 6990974 6992544 - gene protein_coding_gene FALSE TRUE AT2G16070.1|AT2G16070.2 PDV2 (PLASTID DIVISION2) An integral outer envelope membrane protein (its homolog in A thaliana PDV1), component of the plastid division machinery. Similar to ARC5, PDV2 localized to a discontinuous ring at the division site in wild-type plants. PDV1 and PDV2 are required for localization of ARC5 at the chloroplast division site. similar to Os07g0123300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058796.1)|similar to PDV1 (PLASTID DIVISION1) [Arabidopsis thaliana] (TAIR:AT5G53280.1); similar to Os07g0123300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058796.1) -0.0213733258388118 -0.277978885230546 0.787749282352026 1 0.811784843619785 19.8869406877796 -0.0213733258388118 0.0529167566641591
AT3G60320_at 10.0147000841061 10.2568229853853 9.66126192482632 9.65718482758158 10.4205989662958 10.0580251998443 10.2776065773406 10.0339522948557 10.9203568031932 10.6925536902804 11.7828790371171 11.2183128368061 11.1459796219849 11.2925638193059 11.0622810438012 10.7334689997669 10.1709364717160 10.7790243244303 11.0175568470536 0.113730033463473 0.109980683161293 0.109807416840834 0.111137729877523 0.109807416840834 0.124813349741698 0.110394344802086 0.109807416840834 0.119528718678274 0.115367981569005 0.109807416840834 0.109807416840834 0.116713907931105 0.109807416840834 0.109807416840834 0.109807416840834 0.128504277451068 0.125397284857757 0.114350105616683 3 3 - 22303048 22303618 22303297 22302861 22306346 - gene protein_coding_gene FALSE TRUE AT3G60320.1 DNA binding similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT1G02110.1); similar to Os10g0562700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065395.1); similar to bZIP transcription factor bZIP80 [Glycine max] (GB:ABI34654.1); similar to bZIP protein (GB:AAA90943.1); contains InterPro domain Protein of unknown function DUF632; (InterPro:IPR006867); contains InterPro domain Protein of unknown function DUF630; (InterPro:IPR006868) -0.0250722166306283 -0.277959414907687 0.787763727654302 1 0.811779217905235 20.9975207156337 -0.0250722166306283 0.0864350909022815
AFFX-r2-Bs-thr-5_s_at 3.60236057894901 3.98652935055898 5.31808755827657 3.55741832897951 6.54335442448858 3.91214720892427 7.24105495482163 3.48719013755523 5.1424484408019 7.07288442583316 5.99578380959218 6.88708774895002 6.09767591657258 5.83400191279574 6.02866702587784 6.13084091578303 5.47692336967621 5.40409501060629 7.47640124419029 0.196605476752887 0.193054920848166 0.203481674418265 0.197661105447911 0.195444166209248 0.194063542887116 0.195473918763181 0.19186385592512 0.228016877785794 0.198536518602396 0.196465814935358 0.19186385592512 0.1991755896899 0.206934368514593 0.198496613191932 0.193475896436667 0.200153864250129 0.193647839203027 0.19186385592512 NA NA NA NA NA FALSE FALSE -0.164279390923681 -0.277440585346440 0.788148686409006 1 0.81162945071874 10.9789157348227 -0.164279390923681 0.852411383411443
AT3G44630_at 8.71327475970394 8.82707603697281 9.35069965271225 9.30292665438389 9.27036984064446 8.46596740128821 9.14017729330415 8.9885664018339 9.01034284171792 8.83169378748678 8.71936080063696 8.79616299039874 8.66590469844537 9.0998972518807 8.15294697442337 9.20905942102855 8.28711125162684 8.4832591167169 8.9280729252635 0.125166760211460 0.124279085144822 0.136211292753970 0.129737821551368 0.128688502605564 0.137813119413335 0.124279085144822 0.130598588629049 0.153118317070482 0.127714037663954 0.127936593116025 0.125007728475778 0.129095719243007 0.126828270128900 0.145375142745808 0.130877158884844 0.148320184784301 0.140249055195733 0.136529774684942 3 3|0 +|/ 16210839 16211238 16211058 16206971 16212212 + gene protein_coding_gene FALSE TRUE AT3G44630.1|AT3G44630.2|AT3G44630.3 disease resistance protein RPP1-WsB-like (TIR-NBS-LRR class), putative similar to RPP1 (RECOGNITION OF PERONOSPORA PARASITICA 1) [Arabidopsis thaliana] (TAIR:AT3G44480.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT3G44670.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G44400.1); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain RNA polymerase subunit, RPB5; (InterPro:IPR000783); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991)|similar to RPP1 (RECOGNITION OF PERONOSPORA PARASITICA 1) [Arabidopsis thaliana] (TAIR:AT3G44480.1); similar to ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor [Arabidopsis thaliana] (TAIR:AT3G44670.2); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT3G44400.1); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat 3; (InterPro:IPR011713); contains InterPro domain RNA polymerase subunit, RPB5/RPB6-like; (InterPro:IPR009026); contains InterPro domain AAA ATPase; (InterPro:IPR003593) -0.0332198870206095 -0.277295989809591 0.788255983689791 1 0.811587760151962 17.8074235874225 -0.0332198870206095 0.143257712986054
AT1G54140_at 5.23428739074845 5.97234391189086 5.21689195044205 5.78153020377272 5.52580766272361 5.69060604572758 5.1489352940089 5.29203002773314 4.57681952333594 4.49065163684079 4.91420426900109 4.35284877500177 4.46371596955913 4.69524711993854 4.54885185222655 4.37729638055542 4.32744334775937 4.61703586965396 4.74883936136128 0.206211525949384 0.198656013818926 0.198743847030009 0.195045949745379 0.206063256057257 0.203185421772007 0.204179418417946 0.195162108667363 0.203308515438275 0.203693542752295 0.195045949745379 0.197082002576271 0.200888309619581 0.195911316652100 0.202739073484339 0.199018675444288 0.204752324318938 0.200947557571929 0.196336337545119 1 1|0 -|/ 20217768 20218471 20218114.556 20217636 20218890 - gene protein_coding_gene FALSE TRUE AT1G54140.1 TAFII21 (TATA BINDING PROTEIN ASSOCIATED FACTOR 21KDA SUBUNIT); transcription initiation factor putative TATA binding protein associated factor 21kDa similar to unknown [Solanum tuberosum] (GB:ABA81859.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Transcription factor TAFII-31; (InterPro:IPR003162); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) 0.0367267085102307 0.277045336474706 0.78844199258069 1 0.811515540927546 10.0540627051182 0.0367267085102307 0.165190479911741
AT3G06400_at 9.73660789616443 9.84535639485083 9.83291175643305 9.9507417001028 9.93921075268893 9.81262815292071 9.41095247380132 9.64213372218927 9.72455487849455 10.0451079046559 9.91834196382937 9.79089080387378 9.8853444719383 9.72642369109135 9.52783697926215 9.87369851202121 9.70984545219456 9.66410076019001 10.0647069479051 0.0891611717871628 0.0863406425474212 0.0860760069705937 0.0901315717873256 0.0874091285318498 0.0904622316310066 0.0863187787649067 0.0871037513162635 0.0919469873828242 0.0862246939840128 0.089291937162945 0.0837401503881631 0.0838495619407958 0.0913533074198347 0.0884092351431974 0.0873077348189535 0.0928939672099773 0.086840538459386 0.0874938943897236 3 0|3 /|+ 1946351 1946680 1946486 1941007 1946930 + gene protein_coding_gene FALSE TRUE AT3G06400.1 CHR11 (CHROMATIN-REMODELING PROTEIN 11); DNA-dependent ATPase Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature. Identical to Putative chromatin remodelling complex ATPase chain (EC 3.6.1.-) (ISW2-like) (Sucrose nonfermenting protein 2 homolog) [Arabidopsis Thaliana] (GB:Q8RWY3;GB:Q9SQU3); similar to CHR17 (CHROMATIN REMODELING FACTOR17), DNA-dependent ATPase [Arabidopsis thaliana] (TAIR:AT5G18620.2); similar to Putative SWI/SNF related, matrix associated, actin dependent regulator of chromatin [Oryza sativa] (GB:AAK53826.1); similar to Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) (ISS) [Ostreococcus tauri] (GB:CAL54689.1); similar to chromatin-remodelling complex ATPase ISWI2 [Chlamydomonas reinhardtii] (GB:AAY86155.1); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0211904438665746 0.275044761282798 0.789927124308647 1 0.810941423455177 19.6247429759699 0.0211904438665746 0.053388992146859
AT3G20290_at 8.88151740649469 8.75049490725256 8.90029929839315 8.71984645697617 9.45819607903445 8.26241860556313 9.24912573678331 8.8036259534793 9.19474849751866 9.22822299319891 9.26969596216597 9.13026120898816 9.35604514386099 9.3854322750351 9.02227341122668 9.31069501544551 9.01578371091538 9.19425451131908 9.2282447447087 0.0954016071910162 0.100674429308368 0.0962189515469117 0.0957400826552828 0.0933947545240115 0.111211501541533 0.094046259157663 0.0964990841311616 0.100858781322796 0.0962374109797944 0.0940925562626203 0.0933947545240115 0.0952059557432658 0.094710421763505 0.0959598166424992 0.0941328708238971 0.101127025914651 0.100391224841106 0.095152206581516 3 3|0 -|/ 7075089 7076032 7075493.556 7074823 7078877 - gene protein_coding_gene FALSE TRUE AT3G20290.1|AT3G20290.2 calcium-binding EF hand family protein|calcium ion binding similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT4G05520.1); similar to EPS15 homology (EH); Actin-binding, actinin-type [Medicago truncatula] (GB:ABE85290.1); similar to EPS15 homology (EH); Dynamin; Actin-binding, actinin-type [Medicago truncatula] (GB:ABE87310.1); similar to Os06g0687800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058410.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Dynamin; (InterPro:IPR001401); contains InterPro domain EPS15 homology (EH); (InterPro:IPR000261) -0.046258907308278 -0.273959280493013 0.790733313322353 1 0.810631624530972 18.0920041721696 -0.046258907308278 0.224176533523293
AT4G29670_at 9.15515889087935 9.3376207041995 9.16908755547277 9.06100825535366 9.28931090986884 9.21414237223625 9.60574239073789 9.59368928412168 9.00151408206733 9.4061879956021 9.35133215948874 9.39221858689822 9.40203175420133 9.28297891958508 9.4362202060893 9.55390770136244 9.53813881673814 9.29834809016264 9.21228181258493 0.123265893948594 0.123118053668906 0.116592306220544 0.117303728259586 0.117328594452267 0.121292916852520 0.120938072263316 0.120513388225232 0.128914641459135 0.127182651148374 0.122652001135475 0.116592306220544 0.119498178102288 0.120874498264354 0.117015160766474 0.123512371202287 0.121065109121861 0.119733462695656 0.131420560974461 4 4|0 -|/ 14535779 14536958 14536362.5 14535548 14537256 - gene protein_coding_gene FALSE TRUE AT4G29670.1|AT4G29670.2 thioredoxin family protein similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G26160.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE79237.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335)|Identical to Thioredoxin-like 6, chloroplast precursor [Arabidopsis Thaliana] (GB:Q8LCT3;GB:Q94F31;GB:Q9SU84); similar to thioredoxin family protein [Arabidopsis thaliana] (TAIR:AT4G26160.1); similar to Thioredoxin domain 2 [Medicago truncatula] (GB:ABE79237.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0197149058437220 -0.270745048049027 0.793122087047664 1 0.809721325191 18.6099992083923 -0.0197149058437220 0.0389926509143883
AT2G39420_at 8.0569186285862 8.52576836612499 6.99248214439346 7.37801740880461 6.57331347621685 6.60371909454697 4.95894902757475 5.29570161347774 4.99252399458568 4.76417155424896 4.08388149946663 4.60461927896336 4.57574177452652 5.00153282638363 4.40924253354333 5.82248313048403 3.64309993036904 4.36596402074627 4.63981603885281 0.27369482057996 0.281087095572436 0.254432340555527 0.262795203971169 0.257581931998946 0.265703358093937 0.254432340555527 0.254432340555527 0.255973173576226 0.274495307058702 0.257217970157572 0.255641522513639 0.261124414738577 0.26335345380679 0.262913888349726 0.257075005598447 0.273272707119450 0.262484427313648 0.262551929985631 2 2 + 16468467 16469894 16469400.909 16467442 16470111 + gene protein_coding_gene FALSE TRUE AT2G39420.1 esterase/lipase/thioesterase family protein similar to hydrolase, alpha/beta fold family protein [Arabidopsis thaliana] (TAIR:AT2G39410.2); similar to Os12g0262700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066522.1); similar to Os05g0363100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055317.1); similar to Alpha/beta hydrolase [Medicago truncatula] (GB:ABE84979.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073); contains InterPro domain Alpha/beta hydrolase; (InterPro:IPR003089) -0.0289839747679548 -0.270703000290889 0.793153351711059 1 0.809709486762532 11.4791876300688 -0.0289839747679548 0.120243023291215
AT4G34980_at 9.84007322281543 10.2240144664489 9.7755200761463 10.0413871035845 10.4116158240799 10.1928726411452 10.3852502752284 10.7780809861031 9.96660232833973 9.89685172996242 10.1965529723759 10.4805877609517 10.5515537051123 10.2806533998390 10.0305827391306 10.3325887500170 9.91626515253318 10.1762555426976 10.1019915736082 0.0960288808516555 0.0916282756477587 0.100821168181656 0.0963538844752881 0.0928896411520306 0.100332133794503 0.0922061329118945 0.0926648504340857 0.0986765108665873 0.0923642740496548 0.0935470579589697 0.0916282756477587 0.0932927044524406 0.0976546094688071 0.0953009096701941 0.092344953644768 0.100296665925136 0.0932636096231729 0.092832728783835 4 4 - 16656944 16657492 16657269.727 16656696 16659344 - gene protein_coding_gene FALSE TRUE AT4G34980.1 SLP2 (subtilisin-like serine protease 2); subtilase Serine protease similar to subtilisin. similar to ARA12, subtilase [Arabidopsis thaliana] (TAIR:AT5G67360.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT2G05920.1); similar to subtilase family protein [Arabidopsis thaliana] (TAIR:AT3G14240.1); similar to subtilisin proteinase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94911.1); similar to Orn/DAP/Arg decarboxylase 2; Protease-associated PA; Proteinase inhibitor I9, subtilisin propeptide [Medicago truncatula] (GB:ABE87035.1); similar to subtilisin-like serine proteinase, putative [Musa acuminata] (GB:ABF70004.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain Peptidase S8 and S53, subtilisin, kexin, sedolisin; (InterPro:IPR000209); contains InterPro domain Proteinase inhibitor I9, subtilisin propeptide; (InterPro:IPR010259); contains InterPro domain Proteinase inhibitor, propeptide; (InterPro:IPR009020) 0.0278211495593699 0.27057912937358 0.793245458381734 1 0.809674621743621 20.3231577645118 0.0278211495593699 0.112187042440762
AT1G60160_at 8.68328616521637 8.94342811556979 8.56116962067843 8.71857412331233 9.27044830033838 8.97490061899702 8.80345467866449 8.98422744134297 8.12942652357783 8.71827092257655 8.45556391288273 8.38667363302594 8.76669469451899 8.6444174323373 7.92778570853266 8.49101668694633 8.43675042380317 8.27416468633739 8.36239441805813 0.164549187428770 0.165196753117381 0.166885078412606 0.164758408917880 0.171825623147259 0.163970542502553 0.168020902540801 0.164360894270078 0.169026002260443 0.166187875185451 0.164104881771333 0.163803900488718 0.160261737565737 0.177889227214440 0.167339688284781 0.162111028954693 0.175771351241643 0.171358805624536 0.170313941535171 1 1 - 22192028 22192558 22192279.273 22191784 22195060 - gene protein_coding_gene FALSE TRUE AT1G60160.1 potassium transporter family protein Identical to Putative potassium transporter 12 (AtPOT12) (POT12) [Arabidopsis Thaliana] (GB:O80739); similar to KUP5 (K+ uptake permease 5), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT4G33530.1); similar to KUP11 (K+ uptake permease 11), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT2G35060.1); similar to KUP7 (K+ uptake permease 7), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT5G09400.1); similar to putative potassium transporter [Vicia faba] (GB:CAD20577.1); similar to potassium transporter [Phragmites australis] (GB:BAE93350.1); similar to potassium transporter [Phragmites australis] (GB:BAE93349.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.0235967540968494 0.270519225639035 0.79329000221713 1 0.809657766707687 17.2805598090328 0.0235967540968494 0.0797699852136955
AT2G36970_at 7.16919017142449 7.62702676997034 7.52621626370077 7.38688632564241 8.4071053092393 7.83999557201573 6.28115945381286 5.85155049288991 6.90353141995144 6.09710015068064 5.59475995158676 5.03367120794378 5.8343058057891 5.95892859521405 3.39314231212577 6.7146609979471 5.56006755794425 4.53116401012316 5.95745348405479 0.276737641033393 0.283600642792857 0.279848817762943 0.272770951278549 0.272770951278549 0.287065248555024 0.275483140391168 0.278339495061878 0.304252662824127 0.274646725412605 0.281485619568404 0.272770951278549 0.276557529525847 0.282660635770264 0.299836603579324 0.272770951278549 0.275387397414000 0.289640606075875 0.272770951278549 2 2 + 15537268 15537672 15537424.455 15536085 15537828 + gene protein_coding_gene FALSE TRUE AT2G36970.1 UDP-glucoronosyl/UDP-glucosyl transferase family protein similar to glycosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G28080.1); similar to UDP-glucuronosyl/UDP-glucosyltransferase [Medicago truncatula] (GB:ABE87217.1); similar to Os10g0442300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064696.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) 0.0330225077818905 0.269055234098777 0.794378860658189 1 0.809246984222052 13.0846159147019 0.0330225077818905 0.148384106218161
AT1G06630_at 5.62830373955874 5.94026177717512 5.30832066653334 5.22622766426684 6.36352458457851 5.73662367873666 5.25203175520302 5.57291682352534 4.40745414138678 5.11276351807678 5.00881514480706 4.95907353546864 5.03173690455512 5.34083509021475 4.29025386043388 4.86582546517513 4.72536654562361 5.11256451086377 5.22619169885989 0.256321741776663 0.248671589356614 0.264124165991233 0.258404749966973 0.246249291578225 0.253651400617401 0.243847099223146 0.249143714531042 0.262610582418799 0.253728805125913 0.244410047600785 0.243077694545163 0.254268720416473 0.248595845308027 0.246344103404917 0.243688200983522 0.258718267215474 0.249275712371421 0.253935662789853 1 1|0 +|/ 2028709 2029290 2028890.8 2027742 2029592 + gene protein_coding_gene FALSE TRUE AT1G06630.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G60040.1); similar to Cyclin-like F-box; FBD [Medicago truncatula] (GB:ABE84776.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.0308173603491027 0.268883364984666 0.794506721304809 1 0.809198902884082 10.5446656703225 0.0308173603491027 0.134050811333194
ATCG00810_at 11.1124438538016 11.4282032699876 11.1632529659200 10.9352037034363 11.6040176592584 10.8649652377343 12.0955772724568 12.1056213005430 11.3863028215399 11.6719882366528 12.2004609101234 12.7007146537744 11.7078535912046 11.8499689276003 12.1820093303366 12.1160563674117 11.2755162940863 11.7141524676295 11.4068950643405 0.0949558825822987 0.0902940128489718 0.0903532453194451 0.0937036802033803 0.0891304375235151 0.0905337411198156 0.0906125276505263 0.0926448370818083 0.102297468506621 0.08971119165451 0.0918442748029901 0.0891304375235151 0.0898296234512023 0.097639750940752 0.0939105339104163 0.0897438796416182 0.0956878112152598 0.094513832966574 0.0891304375235151 C C - 83473 83875 83716.909 83467 83949 - gene protein_coding_gene FALSE TRUE ATCG00810.1 encodes a chloroplast ribosomal protein L22, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L22 (rpl22) [Arabidopsis Thaliana] (GB:P56795); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G52370.2); similar to ribosomal protein L22 [Solanum tuberosum] (GB:YP_635678.1); similar to ribosomal protein L22 [Lycopersicon esculentum] (GB:YP_514891.1); contains InterPro domain Ribosomal protein L22, bacterial and organelle form; (InterPro:IPR005727); contains InterPro domain Ribosomal protein L22/L17; (InterPro:IPR001063) -0.0318276695084225 -0.264010373678362 0.79813465775806 1 0.807848213442979 23.1420291288665 -0.0318276695084225 0.144581950808445
ATCG00470_at 13.9891721110902 14.3271757123269 14.2557431955637 14.2668423975630 13.9459156194050 13.8093297972840 14.1538204911731 14.4415912114391 15.1092401832147 15.1110777099134 15.3074846888580 15.3405320718199 15.168742743063 15.2454436267428 15.1512601049242 15.1206523968719 14.7635800118802 15.1119438229191 14.8964388880934 0.0692246614134089 0.0642192883166033 0.0698146403866146 0.0676968978063929 0.0681678523411292 0.0710069481463502 0.069948622403777 0.0641312173025559 0.0644941640418355 0.0625686250537618 0.0625686250537618 0.0631214732950385 0.0625686250537618 0.0643078609661472 0.0635237272492275 0.0625686250537618 0.0678045635243452 0.0630521026308643 0.0631473511357334 C C - 52272 52542 52409.7 52265 52663 - gene protein_coding_gene FALSE TRUE ATCG00470.1 ATPase epsilon subunit similar to ATP synthase CF1 epsilon subunit [Gossypium hirsutum] (GB:YP_538941.1); contains InterPro domain ATPase, F1 complex, delta/epsilon subunit; (InterPro:IPR001469) -0.0230980613711553 -0.263972097720797 0.798163174796737 1 0.807837700214382 29.2437607472100 -0.0230980613711553 0.080398243160749
AT2G32810_at 9.18141737993765 9.1656468018371 8.95144740308263 8.77640154210455 9.33943155819292 8.89229749393565 9.13566679162029 8.75588587668366 8.77557848064752 8.79528524365225 8.86161868596572 8.8882626053678 8.73654122866246 8.41695131784973 8.7907613480386 8.62720353749415 8.82041052785038 8.7785645211722 8.59684714842988 0.125907789129893 0.127303027108112 0.13009161499438 0.135109187657099 0.122714280218786 0.131694125697720 0.125324992928794 0.126474852568793 0.132389609620339 0.127742428581355 0.127848205354560 0.121984511897109 0.125257549590198 0.141258881130732 0.129546392521429 0.123714180093074 0.129112839669443 0.136368844850321 0.124114827084584 2 0|2 /|- 13926504 13927188 13926879.4 13926204 13932427 - gene protein_coding_gene FALSE TRUE AT2G32810.1 BGAL9 (BETA GALACTOSIDASE 9); beta-galactosidase putative beta-galactosidase similar to BGAL1 (BETA GALACTOSIDASE 1), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT3G13750.1); similar to BGAL8 (beta-glactosidase 8), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT2G28470.1); similar to BGAL3 (beta-galactosidase 3), beta-galactosidase [Arabidopsis thaliana] (TAIR:AT4G36360.1); similar to putative beta-galactosidase [Glycine max] (GB:AAQ62586.1); similar to beta-D-galactosidase [Pyrus pyrifolia] (GB:BAD91079.1); similar to pear beta-galactosidase3 [Pyrus communis] (GB:BAE72075.1); contains InterPro domain Glycoside hydrolase, family 35; (InterPro:IPR001944); contains InterPro domain Galactose-binding like; (InterPro:IPR008979); contains InterPro domain D-galactoside/L-rhamnose binding SUEL lectin; (InterPro:IPR000922) -0.0261453912752434 -0.262409050385658 0.799327976973743 1 0.807409658630291 17.7560791121543 -0.0261453912752434 0.105981278595706
AT2G44200_at 7.02742021049068 7.00596014996633 6.91740287929919 6.6720253390977 6.62873339956407 7.13963609837883 6.30527621356096 6.27387528587815 6.01015184729657 5.87002833722133 5.86369103778744 5.79653905930793 5.69614793815206 6.10540508969005 5.33875240169729 6.04000602735394 5.91794915465301 5.31736716700527 6.10804934782318 0.239159805693156 0.238443910014239 0.237611714935650 0.238141919208119 0.238251086013568 0.240441083744898 0.233532030448091 0.233986400210457 0.238864302448199 0.237377561829161 0.240414335943420 0.235112524587018 0.242340251567825 0.239060446573899 0.235178143142698 0.233062624031377 0.234286363869562 0.240915462856607 0.241228958801958 2 2 + 18284865 18285289 18285104.727 18283286 18285703 + gene protein_coding_gene FALSE TRUE AT2G44200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G44195.1); similar to hypothetical protein DDBDRAFT_0218547 [Dictyostelium discoideum AX4] (GB:XP_638919.1); similar to Os08g0500200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062154.1); contains domain gb def: Expressed protein (At2g44200/F6E13.34) (PTHR16196:SF2); contains domain UNCHARACTERIZED (PTHR16196) -0.0251389061067835 -0.262371295238006 0.799356119148235 1 0.80739935025561 12.6240705696476 -0.0251389061067835 0.0983033140907298
AT1G30890_at 6.81207564887576 7.08602539559215 7.03809781093804 6.98783452835483 6.99039461990553 6.05450691561613 6.54630843179252 6.6250311165201 6.56911933113361 5.71441726984637 5.44170751321909 6.20546038193445 6.11093609483046 5.9965755440745 6.25291101235428 5.65225888330578 5.76260928888960 5.8384830372785 5.6525526395627 0.293489555898601 0.295506429499795 0.307955581448398 0.29904145723577 0.299506537650487 0.317112480862476 0.297544540332964 0.293005761355482 0.318462591504561 0.291501424511741 0.287710732201124 0.294787749450756 0.291281702665044 0.288378349608754 0.298029165349281 0.298205330913073 0.321170973494260 0.300014362791309 0.294349101212501 1 1 + 10995352 10995923 10995625.545 10994302 10996115 + gene protein_coding_gene FALSE TRUE AT1G30890.1|AT1G30890.2 integral membrane HRF1 family protein similar to integral membrane HRF1 family protein [Arabidopsis thaliana] (TAIR:AT3G59500.1); similar to H0806H05.8 [Oryza sativa (indica cultivar-group)] (GB:CAC09475.2); similar to Os04g0165400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052132.1); contains InterPro domain Hrf1; (InterPro:IPR005578) -0.0353651867599439 -0.261676709345067 0.799873909211197 1 0.807209965966042 12.7106913749494 -0.0353651867599439 0.169528037031592
AT1G03000_at 7.37289256530343 7.1845794612804 7.30141261796409 7.04435413486717 7.64518556636461 7.54150883639273 7.35724884280571 6.99784528250835 7.34944839067524 7.42119803038032 7.22036937456757 7.12935668189668 6.98527870923918 7.32456046645855 7.10613531035355 7.50359740488589 7.65325694441387 7.25512079294618 7.37042842355174 0.155090922363697 0.150874822612406 0.161282921607300 0.162014173433898 0.151255629188117 0.153813063716361 0.152141260045330 0.148378541897214 0.158967905968642 0.154640820506355 0.156328858743102 0.154982275608797 0.143840642024644 0.151302165405555 0.147269174449792 0.156423992265556 0.159816961100847 0.155261909886591 0.149754065938293 1 1|0 -|/ 688060 688867 688538.2 687890 692560 - gene protein_coding_gene FALSE TRUE AT1G03000.1 PEX6 (PEROXIN6); ATPase Encodes an apparent ATPase similar to yeast and human protein required for peroxisomal biogenesis. May facilitate recycling of PEX5, the peroxisomal matrix protein receptor, and thereby promote peroxisomal matrix protein import. similar to cell division cycle protein 48, putative / CDC48, putative [Arabidopsis thaliana] (TAIR:AT3G53230.1); similar to H0313F03.5 [Oryza sativa (indica cultivar-group)] (GB:CAH68334.1); similar to Os04g0617600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053886.1); similar to peroxin 6 [Helianthus annuus] (GB:CAC42781.1); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.023412464991047 0.261399673004957 0.800080459501202 1 0.807134567477866 14.6319122845013 0.023412464991047 0.0850367220349102
AT1G14310_at 6.50553288032038 6.67869404949909 6.72367878248916 6.31362187463843 7.35899785816423 6.65872382847979 7.28356199571718 7.27990435022058 6.64029180482123 6.8046270304643 6.99247732007132 7.0245710505806 6.38910408320321 7.33520202065626 7.26933212295848 7.2462478007411 6.7498906688253 6.95547463242139 6.83429206752113 0.208085730938125 0.202656638248097 0.205410018052438 0.211210282475645 0.208669294921856 0.211287481591096 0.206231481823661 0.206394913978527 0.209292525864750 0.207298158397328 0.208673918535519 0.212196985153766 0.201442092563478 0.210768115332666 0.21736719585116 0.201442092563478 0.206554402820733 0.208132836183771 0.201442092563478 1 1|0 +|/ 4885568 4886617 4885971.125 4885039 4886788 + gene protein_coding_gene FALSE TRUE AT1G14310.1 haloacid dehalogenase-like hydrolase family protein similar to haloacid dehalogenase-like hydrolase family protein [Arabidopsis thaliana] (TAIR:AT2G41250.1); similar to Os08g0169800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061089.1); similar to Haloacid dehalogenase/epoxide hydrolase [Medicago truncatula] (GB:ABE94184.1); contains InterPro domain HAD-superfamily subfamily IA hydrolase, REG-2-like; (InterPro:IPR011949); contains InterPro domain HAD-superfamily hydrolase, subfamily IA, variant 1; (InterPro:IPR006439); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834); contains InterPro domain Haloacid dehalogenase/epoxide hydrolase; (InterPro:IPR005833) 0.0311913809167939 0.259944494653441 0.80116567072697 1 0.806739813831208 13.7278516674583 0.0311913809167939 0.143596642488983
AT3G06330_at 8.66702520410106 8.95785153367536 8.90386390468021 9.23921082634152 9.53054607642978 9.03409540344001 9.32957162873767 9.27246538181779 9.5037923211979 8.94001834433937 9.2360971594435 9.10871507178798 9.39994845370252 9.30387413466386 8.65466857318895 9.43522235950747 8.96426050276192 9.09936515005289 9.20506518290995 0.130380202926972 0.121315465636158 0.130009955834505 0.124450760677546 0.125463465399199 0.134939867855172 0.123388185707148 0.120132886643258 0.132557504136234 0.127606718944965 0.123130126378099 0.118763080909201 0.119872574512989 0.134009604702893 0.125427727406057 0.122156633976774 0.140508922517936 0.134039325861405 0.118763080909201 3 3|0 +|/ 1918917 1919672 1919409.778 1917246 1919931 + gene protein_coding_gene FALSE TRUE AT3G06330.1|AT3G06330.2|AT3G06330.3 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G18760.1); similar to Zinc finger, RING-type [Medicago truncatula] (GB:ABE87296.1); contains InterPro domain RINGv; (InterPro:IPR011016); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0270887958980706 0.258869695637013 0.801967503719766 1 0.806449638572171 18.3001091824634 0.0270887958980706 0.115670170443589
AT1G66890_at 7.69990609583974 8.3304877572865 7.64066693409879 7.58257351082485 8.67610260661584 8.34376061548052 8.67764096078793 8.57775327830406 7.81578085475692 7.48470261392286 7.9529635472221 8.25365234815094 8.03612993426476 8.26065335959314 7.14980589125095 7.96822313319973 7.57090332171199 7.84946348560114 7.72751266212665 0.177948518613127 0.170701296044339 0.180840639939977 0.171495139923351 0.177022971287961 0.184569307429063 0.171916662842749 0.173836032234308 0.187514387924716 0.176659254181417 0.175025176995335 0.170872943829454 0.169277311180969 0.177968352702540 0.169277311180969 0.172904068390461 0.18398030895554 0.175834636830213 0.173840659797327 1 1 + 24961294 24961714 24961488 24961221 24961777 + gene protein_coding_gene FALSE TRUE AT1G66890.1 similar to 50S ribosomal protein-related [Arabidopsis thaliana] (TAIR:AT5G16200.1) -0.0282227194720108 -0.257475065188363 0.803008309880475 1 0.806074877034015 15.9692230138514 -0.0282227194720108 0.124963781172483
AT1G17530_at 5.88489133780389 6.26453709377763 5.66790415191221 5.83511172973655 6.20756450967438 6.1817623336623 4.75664787270082 5.44618488623288 5.34887441378643 4.91569670093377 4.8139103451532 4.52547890342997 4.851687581481 4.73115194735874 4.4163431735082 4.65983497218354 5.00308853988439 4.8516476216551 5.26587758842891 0.216574214863972 0.209385666499356 0.217961829074976 0.20975465259901 0.208436451678136 0.213344612404982 0.212319046182702 0.207571798139838 0.207571798139838 0.209693270344241 0.21458146550516 0.211213590083411 0.228214164644042 0.207571798139838 0.210842936163582 0.212939868123592 0.216048752477617 0.210041032864276 0.212612434837239 1 1 + 6027763 6028206 6027922.364 6027624 6028499 + gene protein_coding_gene FALSE TRUE AT1G17530.1 ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23); protein translocase Encodes a translocase of inner mitochondrial membrane. similar to ATTIM23-2 (Arabidopsis thaliana translocase inner membrane subunit 23-2), protein translocase [Arabidopsis thaliana] (TAIR:AT1G72750.1); similar to Mitochondrial import inner membrane translocase, subunit Tim23 [Medicago truncatula] (GB:ABE80471.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim23; (InterPro:IPR005681) -0.030076482591858 -0.255812604998157 0.804249538200304 1 0.80563074605785 10.7348050494200 -0.030076482591858 0.139329567272047
AT2G36290_at 5.94309604943704 6.14655573858997 5.50664266397069 5.90225206397995 5.71475913828273 6.0511184469594 5.58931441002098 6.46773546336721 5.18897223092447 5.52085605221358 5.1427353296703 5.46111675964916 5.83741306841164 5.48651719575182 5.42845661008266 5.10130729532111 5.26492099593443 5.52158883080997 4.99467304288476 0.211721590369869 0.209451604328576 0.214515365696622 0.213803953789048 0.214205150201191 0.214269725461950 0.210382551406290 0.212808819499940 0.214292165785869 0.209660471576001 0.206428947022875 0.204766187107399 0.209022568086615 0.210824387639372 0.207352400317558 0.206063453963666 0.216932387596784 0.20625421866581 0.205055951866247 2 2 - 15215993 15216572 15216276.182 15215706 15217922 - gene protein_coding_gene FALSE TRUE AT2G36290.1 hydrolase, alpha/beta fold family protein similar to esterase/lipase/thioesterase family protein [Arabidopsis thaliana] (TAIR:AT1G74300.1); similar to Os02g0532300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047024.1); similar to H0717B12.5 [Oryza sativa (indica cultivar-group)] (GB:CAH67158.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) -0.0361545508463295 -0.255527252270687 0.804462647696706 1 0.80555479778768 11.2353546398484 -0.0361545508463295 0.180065333924132
AT3G28720_at 7.10545423633936 8.0575141695543 7.42595361243216 7.48457310758659 7.53675906707586 7.55827942177113 7.33757621679849 7.83863234489918 7.66868207938215 7.21474567251496 7.24582032337923 7.79095459326781 7.82518764890111 7.38480528768724 7.09248762311991 7.49032590913948 7.2771076009315 7.34369404819516 7.38303738076012 0.190419857000975 0.176650983400855 0.183684613089041 0.175122509943393 0.174704998478053 0.169634881152966 0.183409956184054 0.177939619305019 0.174904277858861 0.175148586923845 0.179105501717158 0.169634881152966 0.169634881152966 0.187007202076313 0.185620874240010 0.173086859757355 0.188012444391952 0.180439921214912 0.176615161867336 3 3 + 10784996 10785513 10785257.818 10783513 10785684 + gene protein_coding_gene FALSE TRUE AT3G28720.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G58100.1); similar to Os06g0584200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057947.1); similar to Os06g0585200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057949.1); similar to hypothetical protein DDBDRAFT_0205878 [Dictyostelium discoideum AX4] (GB:XP_641416.1) -0.0371300522863971 -0.255359737962282 0.80458776016456 1 0.805510251730035 14.9698192338305 -0.0371300522863971 0.186495988314322
AT2G30970_at 9.16042672126799 9.31980922252723 9.28157182475764 9.4260430523237 9.27236380827518 8.2373456256099 9.70002604254532 9.67347709553166 8.20874865489057 8.51534355686969 8.76930555707941 9.21970667761422 8.82416667467435 8.90455521194814 9.15901077334367 8.8841975781026 8.6395286993502 8.44208698377873 8.39513847640668 0.160491751471877 0.165702207397532 0.166508165686083 0.164881009124448 0.164245406544688 0.185931246716238 0.164084448312792 0.166286818217805 0.175826769612903 0.166308156270782 0.162267146073060 0.162613356453835 0.163687918739882 0.164489973466813 0.165440284847252 0.162435295328377 0.177603177459188 0.167156987879367 0.166706337645311 2 2|0 +|/ 13187635 13188716 13188009.444 13185926 13189008 + gene protein_coding_gene FALSE TRUE AT2G30970.1 ASP1 (ASPARTATE AMINOTRANSFERASE 1) ASPARTATE AMINOTRANSFERASE 1 Identical to Aspartate aminotransferase, mitochondrial precursor (EC 2.6.1.1) (Transaminase A) (ASP1) [Arabidopsis Thaliana] (GB:P46643); similar to ASP2 (ASPARTATE AMINOTRANSFERASE 2) [Arabidopsis thaliana] (TAIR:AT5G19550.1); similar to aspartate aminotransferase [Oryza sativa (japonica cultivar-group)] (GB:BAA23815.1); similar to aspartate aminotransferase [Panicum miliaceum] (GB:CAA45024.1); similar to aspartate transaminase precursor, mitochondrial [Oryza sativa (japonica cultivar-group)] (GB:BAD54126.1); contains InterPro domain Aspartate/other aminotransferase; (InterPro:IPR000796); contains InterPro domain Aminotransferases class-I pyridoxal-phosphate-binding site; (InterPro:IPR004838); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.036569590352161 0.255246022473072 0.804672694955828 1 0.80548002843769 17.8730812568759 0.036569590352161 0.183000066362691
AT2G29900_at 4.62129218048519 6.07338926443246 5.20540103106322 5.70484048685728 5.99304919372098 5.37002938600748 5.76853539601546 6.24318079058702 5.80217168550151 5.86170631563515 5.7196063739096 5.93165811363575 5.95681817574972 6.11346554854324 5.41197936731875 6.138413756667 5.80039043970017 5.53600307956608 5.82083916143173 0.222955771260976 0.216974154920988 0.214152826976589 0.214203774633098 0.209389803890664 0.225990975194067 0.217479154049489 0.221353686846776 0.213785876213675 0.219945278055257 0.212783558178053 0.209389803890664 0.221494075859968 0.213189694770937 0.230497125011374 0.212160787512032 0.235548470936742 0.209389803890664 0.220049095469454 2 2 + 12757524 12758072 12757837 12756823 12758202 + gene protein_coding_gene FALSE TRUE AT2G29900.1 presenilin family protein Identical to Presenilin-like protein At2g29900 [Arabidopsis Thaliana] (GB:Q9SIK7); similar to presenilin family protein [Arabidopsis thaliana] (TAIR:AT1G08700.1); similar to putative presenilin [Oryza sativa (japonica cultivar-group)] (GB:BAD81114.1); contains InterPro domain Peptidase A22, presenilin signal peptide; (InterPro:IPR006639); contains InterPro domain Peptidase A22A, presenilin; (InterPro:IPR001108) -0.055233290385484 -0.254886396067643 0.804941320121197 1 0.805384534122884 11.4496051716840 -0.055233290385484 0.298310685927244
AT3G22990_at 7.47870129833059 7.56363907149102 7.45523678220437 7.78358081625839 7.9445712134636 7.91230064506937 7.42517482078274 7.9448811022835 7.21267181597261 7.21566865383216 7.43634390694556 7.380776395483 7.30502615123289 7.17480604133462 6.91494327309826 7.32454778903103 7.19748056147332 7.23179754187591 7.66798011919952 0.200367554365131 0.190579772368422 0.188947610105940 0.192175618592020 0.187472935920708 0.195856676952792 0.199086072563067 0.184053122955514 0.185658235966746 0.188655341306074 0.186295161098682 0.190348152432763 0.182133396432672 0.206546715837256 0.195727617834693 0.182220854552450 0.187797046451158 0.1889735336894 0.181934468257062 3 3|0 +|/ 8165310 8166022 8165700.7 8163957 8166352 + gene protein_coding_gene FALSE TRUE AT3G22990.1 binding similar to Unknown protein [Oryza sativa] (GB:AAK55772.1); contains InterPro domain Armadillo; (InterPro:IPR000225); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.0255491511257668 0.254402959812906 0.805302468898375 1 0.805256372337316 14.9940884206825 0.0255491511257668 0.10753927025183
AT2G24270_at 10.9057268147789 11.1390971351617 11.2560878375616 11.2756229012808 11.3253563069681 11.2465881105067 11.7385134015774 11.8023306108142 11.2974980700026 11.7884905738025 11.6072199116668 11.6710717811474 11.8206712770980 11.7824404500062 11.4453746648355 11.8170489632666 11.7253523570035 11.4794614383752 11.6711631398316 0.0740370077237482 0.0645533973335151 0.0662815553574696 0.0681344580142991 0.0664895145360284 0.0665842788575895 0.0662972551473133 0.0665905562706051 0.07353812324909 0.0673788260888467 0.0647986458162332 0.0658010907632954 0.0660559549802432 0.0711720731397776 0.0656105628776713 0.0656385378681796 0.0712341147801622 0.0670050346786741 0.0665796021555738 2 2|0 -|/ 10334407 10335058 10334788.8 10334130 10337021 - gene protein_coding_gene FALSE TRUE AT2G24270.1|AT2G24270.2 ALDH11A3 (Aldehyde dehydrogenase 11A3); 3-chloroallyl aldehyde dehydrogenase/ glyceraldehyde-3-phosphate dehydrogenase (NADP+)|ALDH11A3 (Aldehyde dehydrogenase 11A3); 3-chloroallyl aldehyde dehydrogenase Encodes a protein with non-phosphorylating NADP-dependent glyceraldehyde-3-phosphate dehydrogenase activity. The activity of the enzyme was determined from leaf extracts; the enzyme has not been purified to confirm activity. Identical to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (EC 1.2.1.9) (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase) (Aldehyde dehydrogenase 11A3) (ALDH11A3) [Arabidopsis Thaliana] (GB:Q1WIQ6;GB:Q9ZUG8); similar to ALDH10A8 (Aldehyde dehydrogenase 10A8), 3-chloroallyl aldehyde dehydrogenase [Arabidopsis thaliana] (TAIR:AT1G74920.1); similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase) (GB:P93338); similar to NADP-dependent glyceraldehyde-3-phosphate dehydrogenase (Non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase) (Glyceraldehyde-3-phosphate dehydrogenase [NADP+]) (Triosephosphate dehydrogenase) (GB:P81406); similar to glyceraldehyde-3-phosphate dehydrogenase (NADP) (EC 1.2.1.9) - garden pea (GB:S43832); contains InterPro domain NAD-dependent aldehyde dehydrogenase; (InterPro:IPR012303); contains InterPro domain Aldehyde dehydrogenase; (InterPro:IPR002086) -0.0188201786455542 -0.253609177754279 0.805895566999643 1 0.805046455243996 22.9633140731497 -0.0188201786455542 0.0441612954585052
AT4G16780_at 6.96755528015407 7.10856403209976 6.3602120228656 6.60720866623709 8.11364632576957 7.30358439627704 6.46290574002082 6.12352634945924 8.9421207727142 6.9164506733901 8.26245157405084 8.29557248903097 8.0947798121342 7.72965941642287 7.67348789024445 6.894960253029 5.71004261768415 7.58868165776167 8.22322906013303 0.209614338873449 0.198889544431792 0.218426046770867 0.210861493121061 0.199755401429989 0.206200233920446 0.197155269868372 0.202644049960301 0.223347040321106 0.202063203680435 0.208007119861902 0.196641194035679 0.198625690598587 0.205632131645325 0.201208552621754 0.200436120664419 0.216558135205720 0.201693250296966 0.205538569615815 4 4|0 +|/ 9449678 9450580 9450315.3 9449133 9450758 + gene protein_coding_gene FALSE TRUE AT4G16780.1 ATHB-2 (Homeobox-leucine zipper protein HAT4); DNA binding / transcription factor Identical to Homeobox-leucine zipper protein HAT4 (Homeodomain-leucine zipper protein HAT4) (HD-ZIP protein 4) (Homeodomain transcription factor ATHB-2) (HD-ZIP protein ATHB-2) (HAT4) [Arabidopsis Thaliana] (GB:Q05466); similar to HAT2, transcription factor [Arabidopsis thaliana] (TAIR:AT5G47370.1); similar to hypothetical protein [Capsella rubella] (GB:CAB96199.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Leucine zipper, homeobox-associated; (InterPro:IPR003106); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Helix-turn-helix motif, lambda-like repressor; (InterPro:IPR000047); contains InterPro domain HD-ZIP protein, N-terminal; (InterPro:IPR006712) -0.0327686846319120 -0.253317782409180 0.806113325078052 1 0.804969557171313 14.660136001214 -0.0327686846319120 0.159761372904716
AT1G37130_at 12.4805931478608 12.6334780843274 13.1631081595566 13.2953683364356 13.1133605686379 13.0097985693399 13.1055957836554 13.3496449304548 13.5412728218334 13.4860997952845 13.4157148634339 13.0817089874707 13.3700496962253 13.3760998767350 12.5489030222603 13.5440212060380 13.2767525093520 13.5135170815813 13.4101115200658 0.0706828693130947 0.0694357226906368 0.0665250303804592 0.0696675419093398 0.0678190246123248 0.070607065618707 0.0696111083538243 0.0663277044127357 0.0706053004894681 0.0649671890944309 0.0663157906777464 0.0672998672221811 0.0649671890944309 0.0649671890944309 0.0684167298989946 0.06597622010576 0.0689894644359429 0.0660897150869138 0.067882176702497 1 1 + 14163499 14164021 14163754.182 14160968 14164379 + gene protein_coding_gene FALSE TRUE AT1G37130.1 NIA2 (NITRATE REDUCTASE 2) Identified as a mutant resistant to chlorate. Encodes nitrate reductase structural gene. Involved in nitrate assimilation. Has nitrate reductase activity. Up-regulated by the fungus P. indica. Binds transcription factor At2g35940. Identical to Nitrate reductase [NADH] 2 (EC 1.7.1.1) (NR2) (NIA2) [Arabidopsis Thaliana] (GB:P11035); similar to NIA1 (NITRATE REDUCTASE 1) [Arabidopsis thaliana] (TAIR:AT1G77760.1); similar to Nitrate reductase [NADH], clone PBNBR1405 (NR) (GB:P39867); similar to Nitrate reductase [NADH], clone PBNBR1412 (NR) (GB:P39868); similar to nitrate reductase 2; NR2 [synthetic construct] (GB:AAS86310.1); contains InterPro domain Oxidoreductase, molybdopterin binding; (InterPro:IPR000572); contains InterPro domain Eukaryotic molybdopterin oxidoreductase; (InterPro:IPR008335); contains InterPro domain Oxidoreductase FAD-binding region; (InterPro:IPR008333); contains InterPro domain Oxidoreductase FAD/NAD(P)-binding; (InterPro:IPR001433); contains InterPro domain NADH:cytochrome b5 reductase (CBR); (InterPro:IPR001834); contains InterPro domain Mo-co oxidoreductase dimerisation domain; (InterPro:IPR005066); contains InterPro domain Nitrate reductase NADH dependant; (InterPro:IPR012137); contains InterPro domain Cytochrome b5; (InterPro:IPR001199); contains InterPro domain Flavoprotein pyridine nucleotide cytochrome reductase; (InterPro:IPR001709) 0.0198827241218784 0.253256658146418 0.806159005156515 1 0.804953437757873 26.3913720897577 0.0198827241218784 0.0576954054553769
AT2G42010_at 5.8148542962438 5.79895992182114 6.62716868746148 5.88536852683544 6.0665353480765 5.59663920626644 6.331711312946 5.80937154814817 6.50355575899147 6.01147017530248 6.29946344247738 6.41318316243702 6.29104793783808 6.46234914396362 5.85924013091199 6.34788727928441 5.99150797249365 6.40667259745705 6.36550405474373 0.155779242520326 0.154089287261983 0.165019582367273 0.160848437320602 0.159127019404166 0.162912318979691 0.157015917182527 0.154731396764517 0.169268266757663 0.165576061065676 0.160255097176386 0.154156383383604 0.168848134419176 0.160177549728905 0.162307332450682 0.154089287261983 0.171808001545318 0.161564278887884 0.164015867473808 2 2|0 -|/ 17540113 17540843 17540423 17539891 17545476 - gene protein_coding_gene FALSE TRUE AT2G42010.1 PLDBETA1 (PHOSPHOLIPASE D BETA 1); phospholipase D phospholipase D (PLDbeta) similar to PLDBETA2 (phospholipase D beta 2) [Arabidopsis thaliana] (TAIR:AT4G00240.1); similar to PLDGAMMA3 (phospholipase D gamma 3), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11840.1); similar to PLDGAMMA1 (maternal effect embryo arrest 54), phospholipase D [Arabidopsis thaliana] (TAIR:AT4G11850.1); similar to phospholipase D beta 1 isoform 1a [Gossypium hirsutum] (GB:AAN05430.1); similar to Phospholipase D beta 1 (AtPLDbeta1) (PLD beta 1) (PLDbeta) (GB:P93733); similar to Phospholipase D beta 2 (AtPLDbeta2) (PLD beta 2) (PLDdelta1) (GB:O23078); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain Phospholipase D/Transphosphatidylase; (InterPro:IPR001736); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0353063171910972 0.253026609794989 0.806330934542498 1 0.804892804759346 12.2675405833268 0.0353063171910972 0.176834544985821
ATCG01020_at 11.8805301509677 12.0369600372439 12.0762303129127 11.8812539769765 11.6551115971900 11.7322472809206 11.9803539402784 12.185039444581 13.2085178381388 12.9296656364566 13.6253255165029 13.5094661872808 12.9721291420853 13.2361067526553 13.1050892793226 13.2701775771427 12.6235501768204 13.1541829164149 12.7512051104996 0.0815158280138614 0.0798244420739593 0.0825330276938352 0.0824351301369173 0.0798244420739593 0.0841904472939242 0.0798244420739593 0.0814386863136463 0.0838544151875398 0.0807114145957554 0.0822968150808641 0.0802360346857542 0.0837308350882112 0.0896574820377829 0.0807925003510628 0.08069744521418 0.0815447594437607 0.082908679847901 0.0809917498411986 C C + 113457 113556 113503.364 113449 113607 + gene protein_coding_gene FALSE TRUE ATCG01020.1 encodes a chloroplast ribosomal protein L32, a constituent of the large subunit of the ribosomal complex Identical to Chloroplast 50S ribosomal protein L32 (rpl32) [Arabidopsis Thaliana] (GB:P61847;GB:P42354); similar to ribosomal protein L32 [Coffea arabica] (GB:YP_817530.1); contains InterPro domain Ribosomal L32p protein; (InterPro:IPR002677) 0.0196819069476688 0.250936776846708 0.807893304154863 1 0.804344478819565 25.0035323285804 0.0196819069476688 0.0574823280842933
AT4G39690_at 6.01507397481133 5.93862772538614 5.7577222664074 5.62044182168437 5.5233760149883 5.59262009550356 6.26163572164038 5.79833124352969 4.88224809482305 4.80896015186618 5.15565343251249 5.6898156988698 5.07909286457466 5.6946371181437 5.72677908761454 5.06925312262296 5.27963781931224 4.67370654102636 4.92237235673109 0.244868155297224 0.233613138690353 0.233613138690353 0.242709178618219 0.235353010396631 0.235341534697902 0.233837964977165 0.254697475087033 0.238936296957075 0.233800402174792 0.240783291647804 0.234894609381406 0.238750471877473 0.236146085221026 0.233613138690353 0.23405036485295 0.246534417011347 0.235488978928008 0.240026404166704 4 4 + 18420762 18421603 18421169.182 18417650 18421965 + gene protein_coding_gene FALSE TRUE AT4G39690.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G22795.1); similar to AT4g39690/T19P19_80 [Medicago truncatula] (GB:ABE94517.1); contains domain gb def: AT4g39690/T19P19_80 (Hypothetical protein At4g39690) (PTHR15415:SF2); contains domain FAMILY NOT NAMED (PTHR15415) 0.0225006547075873 0.250624062661391 0.808127169320083 1 0.804262814485272 10.8971113555229 0.0225006547075873 0.0855064707940806
AT3G22110_at 10.3359669797055 10.3378828176467 10.4772879921037 10.5183262645338 10.5740342312650 10.3586808095800 10.6982383097871 10.6632086599805 10.4736215044833 10.3081558643551 10.5161518511603 10.4626290973345 10.2590740629635 10.4833045097702 10.5518734485905 10.4663472671971 10.2342784404618 10.2615138986941 10.2421973025323 0.082467333231866 0.0835287168384145 0.0881763333064075 0.0905236907168427 0.083434270822506 0.0887043363171842 0.0847021609930078 0.0846823763717792 0.0891457424403845 0.085509836564333 0.0827455039067974 0.0818070891194509 0.0842005349366216 0.0890030873381948 0.084792020359566 0.0850669101586324 0.090225247635124 0.0843739925106839 0.0865156210598934 3 3 - 7792826 7793305 7793058.727 7792645 7794172 - gene protein_coding_gene FALSE TRUE AT3G22110.1 PAC1 (20S proteasome alpha subunit C1); peptidase Encodes the alpha-3 subunit of 20s proteasome. Identical to Proteasome subunit alpha type 4 (EC 3.4.25.1) (Proteasome subunit alpha type 3) (20S proteasome alpha subunit C-1) (Proteasome 27 kDa subunit) (Proteasome component 9) (PAC1) [Arabidopsis Thaliana] (GB:O81148;GB:O23711); similar to PAE2 (20S proteasome alpha subunit E2), peptidase [Arabidopsis thaliana] (TAIR:AT3G14290.1); similar to Proteasome subunit alpha type 4 (20S proteasome alpha subunit C) (20S proteasome subunit alpha-3) (Proteasome 27 kDa subunit) (GB:P52427); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) 0.0181649070776553 0.249955921321077 0.808626910990955 1 0.804088667306653 20.8683139893145 0.0181649070776553 0.0384212466522173
AT1G74370_at 6.60351248444214 6.65193090202578 6.27142280106088 5.98719530642772 7.22150290604204 7.02781997219988 6.94303839131716 6.51750607952042 7.19408415870414 6.93581520704171 7.02165963758582 7.09525814821048 7.16371016414118 6.96561950569921 7.01019711730897 7.13425190884529 7.59137279849578 6.89839496712575 6.9034250489436 0.183616948445687 0.173620402741196 0.189509711397801 0.203559387226793 0.166978152208859 0.170012977924829 0.172005435214921 0.171076841269752 0.172072275942332 0.178099890611794 0.178279041873378 0.178778167679207 0.173309092073758 0.176682114666720 0.200344609119458 0.172393536014925 0.167042726149753 0.166978152208859 0.179768329841232 1 1 - 27961932 27962414 27962148.727 27961747 27963027 - gene protein_coding_gene FALSE TRUE AT1G74370.1 zinc finger (C3HC4-type RING finger) family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G29270.2); similar to Os03g0211100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049345.1); similar to Os03g0427100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050412.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0234690874014984 0.249031288616867 0.809318650320956 1 0.803848421961257 13.7135741899577 0.0234690874014984 0.0950573435729294
AT3G44100_at 10.1898834584875 10.4101486068675 10.2874848663614 10.4193290155925 9.85178277716822 9.81391079035066 9.9282191991853 10.4070345607696 9.75032091395766 9.8000608082478 9.70604677486945 9.80007355319703 10.0507413218024 9.97283685391938 9.64574151415013 10.0201774317403 9.9113997934502 9.86715528850898 9.5026448606024 0.112384222521007 0.109340548873822 0.115502545500478 0.118403379493437 0.112226739078406 0.120227509877900 0.114001001322053 0.111371269980328 0.118542323561912 0.121257859364498 0.121305697132165 0.116619695412767 0.110226997784620 0.110116154825578 0.110206965804535 0.109085474843132 0.116793148735411 0.118269644644733 0.121190545371468 3 3|0 -|/ 15877149 15878236 15877616.2 15877026 15878292 - gene protein_coding_gene FALSE TRUE AT3G44100.1 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein similar to MD-2-related lipid recognition domain-containing protein / ML domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G11780.1); similar to E1 protein and Def2/Der2 allergen [Medicago truncatula] (GB:ABE78146.1); contains InterPro domain E1 protein and Def2/Der2 allergen; (InterPro:IPR003172) 0.0233673891130861 0.248978291426378 0.809358304125304 1 0.80383467837216 19.9415310397098 0.0233673891130861 0.0942469828657094
AT2G32040_at 7.8759964408463 8.00790494853444 7.99135927462254 7.93874074578567 8.49621028492673 8.27781828801534 8.61527979248999 8.09632755920552 8.4046714647045 8.12361725271103 8.15887183286968 8.24957100511253 8.1491097439392 8.21200506071657 8.0568142218894 8.30609001136095 8.09199230557443 8.2640217593283 8.25600401255434 0.128239898412889 0.122476717452622 0.138162749634391 0.125396007812431 0.130826880230334 0.133388893058063 0.125989641108982 0.124689644107432 0.133837844327668 0.124479785501784 0.127852253765811 0.129970972798370 0.128937858608279 0.127067006607787 0.126829258183172 0.128766258923236 0.131584844985774 0.138851080358289 0.128844134456737 2 2|0 +|/ 13643735 13644599 13644289.889 13642183 13644908 + gene protein_coding_gene FALSE TRUE AT2G32040.1 integral membrane transporter family protein The At2g32040 gene product has been demonstrated to mediate folate monoglutamate transport involved in tetrahydrofolate biosynthesis. It also mediates transport of antifolates, such as methotrexate and aminopterin. The gene is expressed in both chloroplast and non-green plastids. similar to integral membrane transporter family protein [Arabidopsis thaliana] (TAIR:AT5G25050.1); similar to Os07g0172900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059000.1); similar to Os03g0795000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051544.1); similar to folate/biopterin transporter family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99330.1); contains InterPro domain Biopterin transport-related protein BT1; (InterPro:IPR004324) -0.0241082271612809 -0.248827851354116 0.80947087026226 1 0.803795680926256 16.3861998680977 -0.0241082271612809 0.100487264174353
AT4G23910_at 4.3208580231063 5.51253291850577 4.74272071452796 5.44868961175831 5.29712255644546 4.98506982649171 5.57123940839623 5.01795114006057 4.15235027416008 4.93400639959511 4.90851163912635 4.76511320699904 4.30978362697188 4.60144175819769 4.29279802419419 5.26243761963894 4.78574348359677 4.98187382041019 4.87820808406288 0.29372810440756 0.286426525193904 0.284505724402216 0.290726573364071 0.27971664522652 0.294201332082664 0.284690025656959 0.281397176433996 0.287924570840143 0.282250153687681 0.280539864042538 0.277017146719816 0.281042016057204 0.292437992335898 0.277017146719816 0.279189515408016 0.297969567855142 0.2833495232678 0.281151144965415 4 4|0 +|/ 12427074 12429245 12427900.6 12426570 12429382 + gene protein_coding_gene FALSE TRUE AT4G23910.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G10970.3); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD05314.1) 0.0481816414539172 0.248165002377839 0.80996689987244 1 0.803624131946937 9.80868193324382 0.0481816414539172 0.263701804812725
AT4G32520_at 8.59449361431794 8.60751910996663 8.73669050672392 8.76106076021158 8.60987035344036 8.6331602698613 9.01265374299575 8.64809187358134 7.83121382313133 8.06518199165568 7.44070075529613 7.84631165903523 7.90855091056928 7.8546269336029 7.93591306976983 8.04567956480572 8.37009410156298 7.70871787724476 7.79829106168151 0.179318219587915 0.185320691502325 0.174307171851572 0.182218678356716 0.180625241266192 0.177764048035549 0.180324501931438 0.177135574857131 0.183913078081241 0.181267087656225 0.184303187350656 0.181133025001064 0.180984190864511 0.183919457983842 0.187470079049641 0.179716682383268 0.181216099041642 0.193131076779462 0.193186563460738 4 4|0 -|/ 15689668 15690748 15690174.8 15689470 15692863 - gene protein_coding_gene FALSE TRUE AT4G32520.1 SHM3 (SERINE HYDROXYMETHYLTRANSFERASE 3); glycine hydroxymethyltransferase similar to SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1), glycine hydroxymethyltransferase [Arabidopsis thaliana] (TAIR:AT4G37930.1); similar to Glycine/serine hydroxymethyltransferase (ISS) [Ostreococcus tauri] (GB:CAL58340.1); contains InterPro domain Glycine hydroxymethyltransferase; (InterPro:IPR001085) -0.0199493562465545 -0.247585729650637 0.810400461124942 1 0.803474581861863 16.5939691877917 -0.0199493562465545 0.0633983463067706
AT3G54140_at 8.56494754981953 8.73097081702308 8.58912745675965 8.65577604848714 8.74489605766058 8.80611695764009 9.43595365345993 9.52252108782548 8.15810375953418 8.54625762497143 8.73796236692187 8.93346816200608 9.24009657369671 8.96101746360558 8.63917080690139 9.14509284418768 8.61315818959395 8.9193505107893 8.79074733060976 0.132742851152384 0.127552659913029 0.132313233327476 0.131798300246791 0.130015510378912 0.140997481291036 0.129243231211874 0.132682195353209 0.149032077837748 0.133986053279567 0.131584224465168 0.127552659913029 0.127552659913029 0.133626512911762 0.130983830591394 0.127552659913029 0.132005415334394 0.127552659913029 0.135482302389199 3 3 - 20056915 20057415 20057207.364 20056641 20059550 - gene protein_coding_gene FALSE TRUE AT3G54140.1 proton-dependent oligopeptide transport (POT) family protein similar to ATPTR2-B (NITRATE TRANSPORTER 1), transporter [Arabidopsis thaliana] (TAIR:AT2G02040.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT1G62200.1); similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT5G01180.1); similar to LeOPT1 [Lycopersicon esculentum] (GB:AAD01600.1); similar to putative peptide transport protein [Oryza sativa (japonica cultivar-group)] (GB:BAD31819.1); similar to peptide transporter [Hordeum vulgare] (GB:AAC32034.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) 0.0178379480562794 0.24748496780656 0.81047588418169 1 0.803448603441588 17.5798057967934 0.0178379480562794 0.035988580081412
AT1G31580_at 13.6270006090594 13.8471349217329 13.8748518703166 13.9965601699021 13.5203604732322 13.4260814780124 13.5520434986261 13.6492629443691 14.2097127780238 13.8178696718089 13.9003957765529 14.0252660439732 14.0887663313251 13.9910611432692 13.5488888965463 13.9150608012786 13.8266449255931 14.2388301844064 13.7927136438135 0.0810844704130214 0.0795216432199326 0.080216435532046 0.0826779649556505 0.0731738016938084 0.0794194493567556 0.0731738016938084 0.0744202153838473 0.0774464880125878 0.0753690354899083 0.078245011463234 0.0757910599297244 0.0731738016938084 0.0774704260744511 0.0805284552944201 0.0731738016938084 0.081814347396358 0.0759215813841428 0.0731738016938084 1 1|0 +|/ 11311282 11311624 11311474.7 11311150 11311970 + gene protein_coding_gene FALSE TRUE AT1G31580.1 ECS1 Encodes cell wall protein. ECS1 is not a Xcc750 resistance gene, but the genetic data indicate that ECS1 is linked to a locus influencing resistance to Xcc750. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42530.1) 0.0186842847025082 0.246567480810546 0.81116274488192 1 0.80321253599385 27.6276434760314 0.0186842847025082 0.0494379876926699
AT1G62020_at 8.99263973323157 9.06573881099052 8.71147379362186 8.88198859095219 8.86804909523803 8.93398284559653 8.71163069308698 8.82178494298167 8.66449047657635 8.6193414539764 8.85272799600836 8.87130209260293 8.35887710382103 8.63539710418447 8.98475476108841 8.55104985535115 8.53686544434525 8.37878306392727 8.39992016123774 0.123525952981964 0.118422981671837 0.118008540451535 0.116635521627615 0.116550780263761 0.121353977358846 0.124206849808549 0.122424473179945 0.124072827322838 0.122297701180139 0.116545783295051 0.114596701472660 0.122993792032716 0.118299348145848 0.11731381899153 0.115889817499326 0.121316226379817 0.127249338421653 0.12097158063612 1 1 + 22926830 22927357 22927144 22923479 22927689 + gene protein_coding_gene FALSE TRUE AT1G62020.1 coatomer protein complex, subunit alpha, putative similar to coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana] (TAIR:AT2G21390.1); similar to coatomer alpha subunit-like protein [Lotus japonicus] (GB:CAE45585.1); similar to Coatomer WD associated re (GB:ABE89536.1); similar to putative alpha-coat protein [Oryza sativa] (GB:AAK18837.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Coatomer alpha subunit, C-terminal; (InterPro:IPR010714); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) 0.0179470083410398 0.246423093387321 0.811270853756596 1 0.803175464045172 17.4771462506772 0.0179470083410398 0.0390429077221634
AT2G34860_at 10.5920861071864 10.7333822231081 10.4599038470503 10.4593414849557 10.7095365710641 10.4337115272655 11.0350970619552 11.0832775715155 10.5962778503226 10.9008232287080 11.1352526632071 11.1434926239597 10.9373511724714 11.1549378773841 11.2019359088032 11.2710589843186 10.7457028516270 10.8395510708971 10.7421793214228 0.0898542475088886 0.0854402893568383 0.0954933099725236 0.0898733601024218 0.0857758175537313 0.0920461090548941 0.0888862093034707 0.0889163830220973 0.0993968599187474 0.0877828328677459 0.08939145298584 0.0854402893568383 0.0869661986147914 0.0937857362717213 0.0854402893568383 0.085995690668627 0.0926218052560665 0.090819083626544 0.0917053193571555 2 0|2 /|+ 14715622 14716850 14716206 14715439 14717276 + gene protein_coding_gene FALSE TRUE AT2G34860.1|AT2G34860.2 EDA3 (embryo sac development arrest 3) similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE91339.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) -0.0190518947124947 -0.246345509399707 0.811328945883283 1 0.803155552931888 21.5883356463799 -0.0190518947124947 0.0542756716454948
AT2G18280_at 9.92180435375038 9.99932706906095 9.80420012178367 9.69878848737528 10.4452111051291 9.96729719414435 9.82411009961657 9.87245953520255 10.278483774926 10.1128407372707 10.5433056111366 10.0166005791769 10.2694952157442 10.1507607951565 9.96409601898238 10.1505504857345 9.76837645958432 10.2711423054575 10.3904116051647 0.0955795912214141 0.0957341892653135 0.104453687625042 0.0958609093306753 0.095513047812854 0.102277417149405 0.0944303695362053 0.0979385912301468 0.103776327105015 0.0983747792546715 0.0974247579036461 0.0942472704770016 0.0942472704770016 0.10622666545647 0.095930074519446 0.0942472704770016 0.103858513507528 0.098372352221291 0.0977445870926519 2 2 + 7954703 7955225 7954957.364 7953080 7955550 + gene protein_coding_gene FALSE TRUE AT2G18280.1|AT2G18280.2 AtTLP2 (TUBBY LIKE PROTEIN 2); phosphoric diester hydrolase/ transcription factor Member of TLP family similar to AtTLP3 (TUBBY LIKE PROTEIN 3), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT2G47900.2); similar to AtTLP6 (TUBBY LIKE PROTEIN 6), phosphoric diester hydrolase/ transcription factor [Arabidopsis thaliana] (TAIR:AT1G47270.1); similar to tubby-like protein [Cicer arietinum] (GB:CAB88665.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Tubby; (InterPro:IPR000007) -0.0221694046075234 -0.246124618349692 0.811494347988858 1 0.803098897384705 20.1428345655872 -0.0221694046075234 0.0861563307845978
AT1G07770_at 11.1765897543590 11.1499334475855 10.5974364280333 10.8012940142871 11.2573170860873 10.984492127375 11.0503482817441 10.9306403691875 10.8078365576301 10.8339057930831 11.2223003144815 11.3248666619933 10.9344892626058 11.1168362709813 11.3900493427695 10.7856207543879 10.6374598899198 10.6693236506157 11.0067640014608 0.0798613764457388 0.0783416879261752 0.083527917107065 0.0799913100304187 0.0788704990785134 0.0861052422541926 0.0783416879261752 0.0804421539336586 0.088982822163327 0.0805164399847053 0.0800972553616308 0.0787721053886571 0.0828066773089436 0.0797334171897671 0.0783416879261752 0.0787612146382185 0.0834149076283762 0.0858705267589846 0.079584754242245 1 1|0 -|/ 2408419 2409028 2408735.7 2408202 2409577 - gene protein_coding_gene FALSE TRUE AT1G07770.1|AT1G07770.2 RPS15A (RIBOSOMAL PROTEIN S15A); structural constituent of ribosome Encodes cytoplasmic ribosomal protein S15a. Identical to 40S ribosomal protein S15a-1 (RPS15AF) [Arabidopsis Thaliana] (GB:P42798;GB:Q7GD83); similar to 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana] (TAIR:AT5G59850.1); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) -0.0197301157643153 -0.24572442142975 0.811794038869312 1 0.802996379808219 21.9399832981793 -0.0197301157643153 0.0626428999862141
AFFX-BioDn-3_at 11.3440147541513 11.2727665499674 11.5352892107427 11.3261994317906 11.1320967130335 11.1564279652298 11.2499882919348 11.3337835965255 3.63187853648876 3.20704083776059 3.11352554302907 2.90868565938305 3.31932037095208 3.31034152894786 3.70836015988175 3.27580895712408 3.59603910902629 3.74365514445215 3.13130513130813 0.339676376361713 0.340035712991545 0.340542964899192 0.338860107742910 0.342620522424012 0.341796822862121 0.34115331259429 0.339625200856557 0.333909645791014 0.333177165017413 0.333177165017413 0.333177165017413 0.333177165017413 0.335047762924580 0.333657908806699 0.333177165017413 0.333177165017413 0.333177165017413 0.333177165017413 NA NA NA NA NA FALSE FALSE 0.0179619613173955 0.244821979846314 0.812469960057499 1 0.802765806306353 14.6415084279813 0.0179619613173955 0.0411013042617700
AT2G23930_at 8.12933532362285 8.39459679326294 8.20614260343058 8.23635028012716 8.3752819638542 7.9579462447545 8.35998899854867 8.33515359845674 8.13912740343435 8.0295020888234 8.47403494231565 8.38571900727423 7.9868477963481 8.17757564113441 8.3075546734836 8.04316137684862 8.10946776759423 7.62612682879674 8.04702265971905 0.126127762316903 0.123316041437036 0.121443167866415 0.124675569498182 0.120281977797175 0.12869797042858 0.122196740680379 0.118533406205722 0.134993569040374 0.118058033076660 0.122248392568915 0.118373131263126 0.121868444649037 0.127245861978833 0.126032525809910 0.121574213211843 0.128496647576838 0.123406692573888 0.118622602509468 2 2|0 +|/ 10189446 10190082 10189877.125 10189331 10190320 + gene protein_coding_gene FALSE TRUE AT2G23930.1|AT2G23930.2 small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative|SNRNP-G (PROBABLE SMALL NUCLEAR RIBONUCLEOPROTEIN G) Identical to Probable small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG) [Arabidopsis Thaliana] (GB:O82221); similar to small nuclear ribonucleoprotein G, putative / snRNP-G, putative / Sm protein G, putative [Arabidopsis thaliana] (TAIR:AT3G11500.1); similar to TonB box, N-terminal; Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABD32677.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.0219557259328336 -0.244138635777653 0.812981889479934 1 0.802591768060429 16.3546970031989 -0.0219557259328336 0.0858431464034116
AT4G08920_at 9.19901987579346 9.216337476179 9.35827931176815 9.36172620839125 9.6813209879405 9.58423990004087 9.53860097820815 9.47889810799534 9.51973685471688 9.6450748134818 9.57835505808716 9.37251636882763 9.68934467740178 9.45015462202713 9.16168764113181 9.53080792979066 9.40164047382674 9.2373781343214 9.63400091031194 0.086705505555634 0.0811651976572224 0.0864613133758355 0.0836365650903396 0.0853895515646502 0.0873785008505045 0.0885902077433082 0.0826716367884805 0.0891709440947918 0.086284528651257 0.0879738839078476 0.0840675096185765 0.0835435928547242 0.081391834927405 0.0821389323375943 0.0800411800690907 0.0876437810183711 0.091935118959945 0.084608585584679 4 4 + 5726058 5726522 5726315.727 5724119 5727250 + gene protein_coding_gene FALSE TRUE AT4G08920.1 CRY1 (CRYPTOCHROME 1, OUT OF PHASE 2) Encodes a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1.Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and is out of phase in their response to circadian rhythm. Identical to Cryptochrome-1 (Blue light photoreceptor) (CRY1) [Arabidopsis Thaliana] (GB:Q43125;GB:Q43126;GB:Q8L7Y1;GB:Q9ASZ2;GB:Q9M0S9;GB:Q9ZPF0); similar to CRY2 (CRYPTOCHROME 2) [Arabidopsis thaliana] (TAIR:AT1G04400.1); similar to cryptochrome1 [Brassica napus] (GB:CAG28805.1); similar to cryptochrome 1 protein [Brassica rapa] (GB:ABI31780.1); similar to blue light photoreceptor (GB:1924377A); contains InterPro domain DNA photolyase, FAD- binding N-terminal; (InterPro:IPR006051); contains InterPro domain DNA photolyase, FAD-binding; (InterPro:IPR005101); contains InterPro domain DNA photolyase, N-terminal; (InterPro:IPR006050); contains InterPro domain Deoxyribodipyrimidine photolyase, class 1; (InterPro:IPR002081) -0.0168455435844383 -0.243959722441935 0.8131159386724 1 0.802546280468778 18.9409727587964 -0.0168455435844383 0.0199583507263489
AT2G34730_at 5.76338083611418 6.72039706962879 6.60440277334921 6.20459816131568 7.14697749129669 6.55602253240068 5.10154875706346 5.99477302059325 5.46632958578284 6.10162099365555 4.96302333332068 5.13846870565707 5.56464678856777 5.03893742736003 4.55493248882684 5.48262165823478 5.40651530764919 5.1566702354897 6.3993583664587 0.294571409951043 0.279743237943323 0.289554679489836 0.287665048168214 0.279743237943323 0.279743237943323 0.284535969736543 0.298335599459892 0.291707158490221 0.288201406700518 0.280857749233727 0.287114928790880 0.279743237943323 0.283429271590804 0.285239635398894 0.280692099989073 0.306377364082355 0.320547063581940 0.2821243681865 2 2 + 14663594 14664339 14663931.375 14661690 14664700 + gene protein_coding_gene FALSE TRUE AT2G34730.1 myosin heavy chain-related similar to CIP1 (COP1-INTERACTIVE PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT5G41790.1); similar to WPP domain associated protein [Lycopersicon esculentum] (GB:AAX19941.1); contains InterPro domain Prefoldin; (InterPro:IPR009053) -0.0464503350433987 -0.243867326508293 0.813185168032908 1 0.80252280224538 11.8376775677722 -0.0464503350433987 0.258008262521537
AT2G03760_at 5.54637775789107 5.53872530100387 5.10787990626416 5.48765326678668 5.68605943229709 5.31166422075553 5.48001607312743 5.49699773434447 5.53754419704561 5.35101883159061 5.39165015045104 5.8158915976215 5.12545305123119 5.4534858835171 5.29122877164973 5.34614085667827 5.27262466406032 5.39713486401793 5.05569771745084 0.177963133102497 0.183336243451405 0.176662910363482 0.175278744279337 0.171990289866190 0.173337086009079 0.169100755691365 0.177384465969518 0.179702702412158 0.169100755691365 0.176018427296592 0.169100755691365 0.169304815642133 0.174930033284989 0.174167270022894 0.169100755691365 0.187294484576632 0.175104704185425 0.174622876117137 2 2 - 1149534 1150040 1149874.727 1149334 1150660 - gene protein_coding_gene FALSE TRUE AT2G03760.1 ST (steroid sulfotransferase); sulfotransferase High similarity to flavonol sulfotransferases (FSTs). Differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression induced in response to salicylic acid and methyl jasmonate and bacterial pathogens Identical to Flavonol sulfotransferase-like (EC 2.8.2.-) (RaRO47) [Arabidopsis Thaliana] (GB:P52839;GB:Q9SJW2); similar to sulfotransferase family protein [Arabidopsis thaliana] (TAIR:AT2G03770.1); similar to steroid sulfotransferase 3 [Brassica napus] (GB:AAC63113.1); contains InterPro domain Sulfotransferase; (InterPro:IPR000863) -0.0226336810957398 -0.243508388518578 0.813454125394857 1 0.80243167760921 10.8076491175250 -0.0226336810957398 0.0923448155194043
AT1G44100_at 7.42426917281908 7.71775475039124 8.53441551780568 8.46000020667212 8.13828522276033 7.2778206537544 8.36270236908338 8.31789628150343 6.58748502652059 7.54365415411194 6.94446237542377 5.85542020851724 6.85183795466821 7.15870331764713 5.78302078584749 7.17057832593034 7.04212385598516 6.46135218650895 6.47209042508923 0.233347511424595 0.23280292996735 0.247202068796386 0.223068778286424 0.229181217341791 0.255517219501527 0.23121928122063 0.229959854820496 0.244203169290773 0.225694130654067 0.227192226384387 0.223240510627413 0.222509808713826 0.250815726592235 0.234017474583986 0.22779812291133 0.240594507724827 0.228640581551806 0.234222373848869 1 1 - 16767096 16767654 16767370.727 16766845 16770125 - gene protein_coding_gene FALSE TRUE AT1G44100.1 AAP5 (amino acid permease 5); amino acid permease amino acid permease 5 similar to AAP4 (amino acid permease 4), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G63850.1); similar to AAP3 (amino acid permease 3), amino acid permease [Arabidopsis thaliana] (TAIR:AT1G77380.1); similar to AAP2 (AMINO ACID PERMEASE 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT5G09220.1); similar to amino acid transporter [Lycopersicon esculentum] (GB:AAO13689.1); similar to amino acid permease AAP4 [Vicia faba var. minor] (GB:CAC51425.1); similar to amino acid carrier [Ricinus communis] (GB:CAA07563.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.0311655343961847 -0.242814382288805 0.813974228228999 1 0.802255863207591 14.7922333109604 -0.0311655343961847 0.158047166712837
AT1G34340_at 6.69886848132093 6.42950185903535 6.99733491312597 5.99596046354652 7.71844779308494 6.71653396156685 7.73864369086781 6.66251423970359 6.56506265776647 7.03258925984813 6.7255118647816 7.40225229350248 6.82274809612903 7.36711861317668 6.79202039890446 7.68979203707467 6.63002487079299 6.83080527812148 7.09868710531955 0.208060417432692 0.208283196769150 0.205478188482793 0.210190764840143 0.208368689679087 0.214906062568691 0.206663234607372 0.206866155899162 0.223744549685318 0.209569023839766 0.208070973466035 0.210739132042140 0.215796820139529 0.218514858467489 0.217871765546691 0.205478188482793 0.238890558893599 0.210593950681966 0.219494866916821 1 1|0 +|/ 12533217 12533951 12533691.7 12530805 12534140 + gene protein_coding_gene FALSE TRUE AT1G34340.1 esterase/lipase/thioesterase family protein similar to embryogenesis-associated protein-related [Arabidopsis thaliana] (TAIR:AT5G49950.1); similar to putative late embryonic abundant protein EMB8 [Oryza sativa (japonica cultivar-group)] (GB:BAD25578.1); similar to Os05g0432600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055633.1); similar to Os01g0871100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044934.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.0542208611740937 0.240690013033949 0.815566879456063 1 0.80172076421776 13.8353826032174 0.0542208611740937 0.311363531417689
AT1G53240_at 10.7533763427963 10.8635177419585 10.7309167000605 10.9393829114997 10.5285575064547 10.3903663642106 11.4519450460719 11.6613022485229 10.5048552113623 10.8726164352870 11.1534820238718 11.3773060314840 11.1050856277592 11.1497202211354 11.3520903821818 11.0319836826590 10.7422248794650 10.9545533631797 10.4560107046295 0.089925882450946 0.089925882450946 0.0942099216221644 0.0944355850755384 0.091740531942414 0.0987499301223812 0.0932701769643882 0.0918284870566182 0.108581854361573 0.090629098133906 0.0909301550409528 0.0912470338381969 0.089925882450946 0.101861449347001 0.089925882450946 0.089925882450946 0.105104605496485 0.093680276954489 0.091296694560965 1 1|0 -|/ 19858665 19859550 19859078.222 19858283 19860605 - gene protein_coding_gene FALSE TRUE AT1G53240.1 malate dehydrogenase (NAD), mitochondrial Identical to Malate dehydrogenase 1, mitochondrial precursor (EC 1.1.1.37) (mNAD- MDH 1) [Arabidopsis Thaliana] (GB:Q9ZP06;GB:Q8LBB9;GB:Q9MAH7); similar to malate dehydrogenase (NAD), mitochondrial, putative [Arabidopsis thaliana] (TAIR:AT3G15020.1); similar to Malate dehydrogenase, mitochondrial precursor (GB:Q43744); contains InterPro domain Lactate/malate dehydrogenase; (InterPro:IPR001236); contains InterPro domain Malate dehydrogenase, active site; (InterPro:IPR001252); contains InterPro domain L-lactate/malate dehydrogenase; (InterPro:IPR001557); contains InterPro domain Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria; (InterPro:IPR010097) -0.0190422407868218 -0.240510245337376 0.81570169392868 1 0.801675695875769 21.7746538878102 -0.0190422407868218 0.0595761935562344
AT1G07280_at 10.6353826395435 10.7269821595362 10.6004028140637 10.7097285282574 11.0389724936630 10.7606714746634 10.7948957017500 10.8005017589566 10.5694611609285 10.9422389534897 10.9862074729089 10.624320655865 11.0894841005993 10.6022394346920 10.3534286529286 10.7833306789261 10.7775799318544 10.8072912783084 10.7498406618731 0.106661566502530 0.101411702221384 0.106041036641735 0.105359743323594 0.104491886943569 0.109720477008944 0.103838608020208 0.102246478606113 0.107619734905742 0.101386404375481 0.109393278516806 0.104703085383353 0.101386404375481 0.109427735452660 0.101386404375481 0.103946404367967 0.105150852985470 0.104333529217579 0.103050141425365 1 1 + 2239618 2240962 2240275.727 2238105 2241216 + gene protein_coding_gene FALSE TRUE AT1G07280.1|AT1G07280.2 binding similar to binding [Arabidopsis thaliana] (TAIR:AT2G29670.1); similar to Os05g0447700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055695.1); similar to Os01g0855200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044840.1); similar to putative peroxidase [Oryza sativa (japonica cultivar-group)] (GB:AAM93690.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0185708065226009 0.240279744690826 0.815874564402951 1 0.801617957172796 21.5118582968996 0.0185708065226009 0.054126416752908
ATCG00560_at 9.50364087771836 9.96321676917718 9.74435961934266 9.82262267826246 9.76795306696509 9.50492856973978 10.2199873389379 10.1235183013638 10.5302077877139 10.5057594871305 11.0393940771708 11.1286961004155 10.5533951834741 10.8970836598375 10.5540364671582 10.8912664727350 10.3473307257511 10.6870818794104 10.6581214341541 0.136953230103554 0.123175323051561 0.121845431597443 0.123108391212862 0.122230965137150 0.132804585679687 0.121002055253551 0.126188138930903 0.138748051238934 0.124704689661011 0.127908356202687 0.125040022484145 0.126283621126774 0.121806253110618 0.124143232666797 0.121336008428346 0.130486015973773 0.126443345021430 0.120639601316112 C C - 63805 63896 63848.455 63804 63920 - gene protein_coding_gene FALSE TRUE ATCG00560.1 PSII L protein Identical to Photosystem II reaction center protein L (PSII-L) (PSII 5 kDa protein) (psbL) [Arabidopsis Thaliana] (GB:P60129;GB:P29301); similar to photosystem II protein L [Oryza sativa (japonica cultivar-group)] (GB:NP_039401.1); similar to Photosystem II reaction center protein L (PSII-L) (PSII 5 kDa protein) (GB:Q9GFC2); contains InterPro domain Photosystem II protein PsbL; (InterPro:IPR003372) -0.0225177519052928 -0.240076086792349 0.816027312254734 1 0.801566987778087 20.4947693062268 -0.0225177519052928 0.0941238044849458
AT1G71170_at 6.45445170022305 5.77999735155256 6.09305567043326 5.68166699007746 5.49210574089918 5.69018660174876 5.1371804075176 5.43549950908525 6.02793002574666 5.71930787711378 5.57493009136107 5.80949239844683 5.76352364951387 6.05002100263087 5.87876928922698 6.17920878888849 5.63371094877135 6.18721037939505 5.84149136420818 0.19393504774944 0.190717698084875 0.182648285371317 0.193540674811816 0.186186846743335 0.188512731372773 0.187178463954677 0.182793972576796 0.185296629008805 0.193260718455379 0.188443348380929 0.187248418021769 0.182648285371317 0.191545690269347 0.197512511518935 0.183115798890571 0.196311398160091 0.187464077298402 0.183920362982291 1 1 + 26834690 26835180 26834944.091 26834331 26835761 + gene protein_coding_gene FALSE TRUE AT1G71170.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71180.1); similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Musa acuminata] (GB:ABF69966.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183) 0.0295850357674133 0.239113940253588 0.816749055210414 1 0.801326767652196 11.5942770335516 0.0295850357674133 0.150105307899132
AT3G61150_at 6.41096009297776 6.66317997222808 5.29729804944939 5.66474069224263 6.67678622560329 6.45342653243952 5.62477584987196 5.58072205909594 6.62310512782014 6.24824643261265 6.86460216759956 6.73639073082562 5.61234247485198 6.37845466377811 6.66625846587519 6.57920311889794 5.93006655117649 6.369629328294 6.29377233132102 0.192793366290391 0.196955040627514 0.193955875493397 0.193612958103898 0.194622272175842 0.192260314923756 0.195247210987049 0.193302556783186 0.205996530641562 0.191339091545318 0.19533898370519 0.194364788552609 0.188751871335885 0.188863830116668 0.195410441810043 0.189131485904796 0.191801593239537 0.204067980490201 0.189729394926359 3 3|0 +|/ 22644617 22645792 22645253.5 22641583 22646098 + gene protein_coding_gene FALSE TRUE AT3G61150.1 HDG1 (HOMEODOMAIN GLABROUS1); DNA binding / transcription factor similar to ANL2 (ANTHOCYANINLESS 2), transcription factor [Arabidopsis thaliana] (TAIR:AT4G00730.1); similar to PDF2 (PROTODERMAL FACTOR2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G04890.1); similar to ATML1 (MERISTEM LAYER 1), DNA binding [Arabidopsis thaliana] (TAIR:AT4G21750.2); similar to homeodomain protein HB2 [Picea abies] (GB:AAL83725.1); similar to START domain, putative [Medicago truncatula] (GB:ABE88255.1); similar to baby boom interacting protein 2 [Brassica napus] (GB:ABA70760.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Lipid-binding START; (InterPro:IPR002913); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) -0.0215514057659831 -0.238719005853387 0.817045364096449 1 0.801228439205502 12.4367327183621 -0.0215514057659831 0.0866067711821381
AT2G33860_at 6.43118723942812 6.40272215669024 5.08410956289983 4.68142463579135 6.71275340294406 6.41143120311725 5.64633688346428 5.41228824760379 4.62650530245948 5.30014796407936 5.49396272379524 5.40080109701051 5.30581620065277 5.59347150437063 5.95909625003743 4.73344459457559 5.38280790221131 4.71171410709412 5.15375035812753 0.210273382328528 0.209495533253558 0.206570812757933 0.209710973528833 0.206241378920709 0.210225212817069 0.216820190264506 0.210849832334304 0.228272324530713 0.206819050551846 0.223983572428343 0.209525696029215 0.206241378920709 0.206241378920709 0.217419606114918 0.211607009830955 0.23431626453172 0.215918197000571 0.206241378920709 2 0|2 /|- 14332589 14333054 14332786.8 14332345 14336054 - gene protein_coding_gene FALSE TRUE AT2G33860.1 ETT (ETTIN); transcription factor ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF. Identical to Auxin response factor 3 (Protein ETTIN) (ARF3) [Arabidopsis Thaliana] (GB:O23661;GB:O23670;GB:O81087); similar to ARF4 (AUXIN RESPONSE FACTOR 4), transcription factor [Arabidopsis thaliana] (TAIR:AT5G60450.1); similar to auxin response factor 3 [Lycopersicon esculentum] (GB:ABC69710.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.0225670793189202 0.238159689224748 0.817465057760303 1 0.801089457959417 11.0225019193376 0.0225670793189202 0.0961254781683892
AT4G23570_at 9.836684548018 9.91427096695364 9.88330967578674 9.96833468831037 9.55784278360962 9.30981645616966 9.23186672982029 9.04314010627241 9.31980692169047 9.0845359712495 8.95707849940936 9.139569917369 8.76069276321089 8.99568226182884 8.7914650704713 9.08483390733827 9.01918416421034 8.8964127030261 8.87072420796899 0.119697172969339 0.121864090792280 0.123677002519138 0.123223012747978 0.117221805233919 0.124375014894234 0.115497680355636 0.115085491115742 0.125501052304872 0.122943873436979 0.129929092264972 0.116944972279624 0.123695742581744 0.116741708989490 0.130158504886248 0.118443526016565 0.131503845152974 0.121006777333305 0.122978059119551 4 4|0 +|/ 12301651 12302461 12302035.9 12299833 12302729 + gene protein_coding_gene FALSE TRUE AT4G23570.1|AT4G23570.2|AT4G23570.3 SGT1A (Suppressor of G2 (Two) 1A); binding Closely related to SGT1B, may function in SCF(TIR1) mediated protein degradation. AtSGT1a and AtSGT1b are functionally redundant in the resistance to pathogenes. AtSGT1b was more highly expressed than AtSGT1. The N-terminal TPR domain of AtSGT1a reduces the steady-state level of Arabidopsis SGT1 proteins whereas the same domain from AtSGT1b enhances SGT1 accumulation. The TPR domain is dispensable for SGT1 resistance. AtSGT1a is induced upon pathogen infection and can function in R gene-mediated resistance. similar to SGT1B (enhanced downy mildew 1b), binding [Arabidopsis thaliana] (TAIR:AT4G11260.1); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06580.1); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06581.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain SGS; (InterPro:IPR007699); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to SGT1B (enhanced downy mildew 1b), binding [Arabidopsis thaliana] (TAIR:AT4G11260.1); similar to SGT1-like protein [Brassica oleracea] (GB:CAF06580.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain SGS; (InterPro:IPR007699); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain CS; (InterPro:IPR007052); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0186305952123562 0.237518761467322 0.817946066259267 1 0.800930592785492 18.6168102166148 0.0186305952123562 0.0574957557540472
AT4G35550_at 5.03696523944437 5.02255235948807 5.20412345641957 5.33120880345785 5.8251875550489 5.47763320935905 5.67610052249014 6.29440419896838 4.50873511509972 4.91414410167971 4.97472647409774 4.80766662917972 5.05589423164719 4.94256753808984 4.8486836013985 4.81168518260472 4.67602034803224 4.96063778060048 4.93189165236299 0.221160192449396 0.217784062929035 0.213920055604927 0.227331351067393 0.217518607171652 0.229285401612944 0.217211274088724 0.215293433021766 0.220977121214276 0.214063589688135 0.214606208500685 0.219223398089512 0.213920055604927 0.218408876546320 0.220305575510846 0.220041167373695 0.215956202868730 0.223872829008855 0.214957779675388 4 4 - 16876049 16876490 16876271.909 16875526 16877311 - gene protein_coding_gene FALSE TRUE AT4G35550.1 homeobox-leucine zipper protein (HB-2) / HD-ZIP protein Identical to WUSCHEL-related homeobox 13 (WOX13) [Arabidopsis Thaliana] (GB:O81788); similar to homeobox-leucine zipper family protein [Arabidopsis thaliana] (TAIR:AT1G20700.1); similar to homeodomain protein HB2 [Populus tomentosa] (GB:AAR83341.1); similar to HB2 homeodomain protein [Populus tremula x Populus tremuloides] (GB:CAA09367.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeobox; (InterPro:IPR001356); contains InterPro domain Homeodomain-like; (InterPro:IPR009057) 0.0259221380662145 0.236766022552623 0.818511091602353 1 0.800744552171464 10.3183513412114 0.0259221380662145 0.124725705039631
AT4G31920_at 6.15415537808021 6.33122799570286 6.29489029847837 6.23341881634041 6.60180789167303 6.32484969839922 7.04714954042918 6.27400431938256 6.66592285755351 5.89398640670118 5.84479537218362 5.76922832158518 6.0711992094139 6.07257757353978 5.93624121114662 6.40014120724045 6.51806196293197 6.25896911120351 5.67478280824885 0.215440779563176 0.202376138161643 0.200921800990805 0.198966973796545 0.198966973796545 0.21372167390074 0.211668081254638 0.214604790689663 0.218893991585109 0.203326653928041 0.207889949195409 0.201216070210264 0.207741337659353 0.205925886542065 0.213005103853492 0.198966973796545 0.207860385911079 0.205227277602816 0.204578021859831 4 4 - 15444312 15444953 15444697.818 15444123 15446965 - gene protein_coding_gene FALSE TRUE AT4G31920.1 ARR10 (ARABIDOPSIS RESPONSE REGULATOR 10); transcription factor/ two-component response regulator Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway. Identical to Two-component response regulator ARR10 (Receiver-like protein 4) (ARR10) [Arabidopsis Thaliana] (GB:O49397); similar to ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12), transcription factor/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT2G25180.1); similar to SRR391 [Striga asiatica] (GB:ABG35773.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.0286107884274140 -0.235988927940216 0.819094516405671 1 0.800553102796747 12.5012542108058 -0.0286107884274140 0.145776633588768
AT4G20030_at 5.61205210753564 5.8323269733303 5.15105834779089 5.44670547737128 6.72202973771635 5.85345260510969 5.69529938954071 5.37847458279566 4.63963204231152 5.63621565199068 5.07242119492608 4.98882101311351 5.53834505546064 5.53981998817612 4.15471115598891 5.48555857102374 4.95732928563682 4.54019627942849 5.51198294758499 0.249583374076332 0.249734219914556 0.248601097237874 0.246514793577650 0.246978383578725 0.251282893427241 0.254955913501682 0.260138065650077 0.262278744142899 0.246494134349744 0.248876738674879 0.247217175088719 0.251676917196232 0.244022596487174 0.261947615134490 0.244022596487174 0.27449874611737 0.252973194949818 0.251459625365394 4 4|0 +|/ 10846372 10847185 10846849.7 10846325 10847402 + gene protein_coding_gene FALSE TRUE AT4G20030.1 RNA recognition motif (RRM)-containing protein similar to RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT3G20930.1); similar to Os02g0730800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048016.1); similar to RNA-binding re (GB:ABE80433.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0320933086483164 -0.23463758444011 0.820109357170968 1 0.800221656253944 10.8600551686147 -0.0320933086483164 0.172250899585230
AT1G14200_at 7.24448576116344 7.42526738006124 6.8963139488459 7.18447927472973 7.67904768314941 7.19932754056669 6.54381825587013 6.55716412559105 6.48189578165691 6.62779048958745 6.51968137967332 5.92701994568325 6.15554667330375 6.63622075921575 5.50395301017114 6.92257050686155 7.03840276353132 6.40715348091723 6.8108714920142 0.203828721524191 0.201886965827659 0.201886965827659 0.219254249330975 0.205902679675434 0.206936257899694 0.20436535479912 0.209681880292992 0.212251748090233 0.206268227623781 0.211034503846018 0.204747569662911 0.201886965827659 0.206799805214407 0.219946468831968 0.205952434793518 0.213854799109569 0.210138045127235 0.201886965827659 1 1 - 4854536 4855027 4854809.818 4854379 4855195 - gene protein_coding_gene FALSE TRUE AT1G14200.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G26800.1); similar to Os07g0631200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060361.1); similar to Os01g0276600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042730.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE89147.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0228704374924718 0.234480100855106 0.820227648537575 1 0.800183152079537 13.6057402392501 0.0228704374924718 0.101798334220538
AT1G64090_at 9.11974571610344 9.29619374679297 9.105825549862 9.34755228089212 9.41687758158248 9.03931227386629 9.65152879255279 9.59699384352373 9.03667903278942 8.62660695872459 9.06547708784108 9.18746422871927 8.8404723578298 8.9941322734015 9.05581386115316 8.62252545384205 8.57373028568018 8.82720592279255 8.33314954239092 0.140342007909337 0.141479459127094 0.142561852004116 0.144404164479888 0.140194918100776 0.145222722397273 0.140584588097712 0.144766851118007 0.142157141992044 0.140287903720745 0.136247124966121 0.135515100530062 0.146340564031494 0.148057447177935 0.140290084557236 0.139123142218086 0.149240286732859 0.151466544184034 0.155658339251533 1 0|1 /|+ 23793532 23794299 23793766.75 23792972 23794585 + gene protein_coding_gene FALSE TRUE AT1G64090.1 reticulon family protein (RTNLB3) similar to BTI3 (VIRB2-INTERACTING PROTEIN 3) [Arabidopsis thaliana] (TAIR:AT5G41600.1); similar to Os05g0526400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056102.1); similar to Os01g0736900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044177.1); similar to putative 24 kDa seed maturation protein-like protein [Solanum tuberosum] (GB:ABC01908.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0208252847066492 0.23384078686448 0.820707909227423 1 0.800027103923626 18.1024193207515 0.0208252847066492 0.0839083769326824
AT1G29670_at 11.373426479094 11.5182230302328 10.5650431970836 10.5903027675135 11.5672629524545 11.5608319169713 11.9525364068578 11.9584316119504 12.0751991670331 12.1630594756522 13.1241485497649 12.9348928034324 12.6380972546764 12.7344041790813 12.938006428264 12.3271729038734 11.9866170219486 12.5928098069429 11.9489523356883 0.073903800119328 0.075405916249922 0.0771180600271308 0.0773489955872922 0.0755366483545508 0.076482458360398 0.0766851354511969 0.0760700023068894 0.0799310417933523 0.0746444280046727 0.0753469238710907 0.0745094349641458 0.0745061066974048 0.0775473663335085 0.0755607948729042 0.073903800119328 0.0779523765066369 0.0771707570333101 0.0777545629744644 1 1|0 +|/ 10376590 10377661 10377285.5 10375753 10377857 + gene protein_coding_gene FALSE TRUE AT1G29670.1 GDSL-motif lipase/hydrolase family protein similar to GDSL-motif lipase/hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G29660.1); similar to GDSL-lipase 1 [Capsicum annuum] (GB:AAZ23955.1); contains InterPro domain Lipolytic enzyme, G-D-S-L; (InterPro:IPR001087) -0.016339607243941 -0.233721755568387 0.820797335851931 1 0.799998096345729 23.7467184342476 -0.016339607243941 0.0254809102348088
AT1G21450_at 7.3887475202383 8.13674784021641 8.43294941557538 8.55335514321975 8.65186453445473 8.32450404806935 7.96060419682 8.02936960411279 6.57899091783515 6.88461788334569 6.16479626093164 5.97355977933081 6.45148615741104 6.43603640362802 5.37185136625234 7.01575360270563 6.99063398454286 5.7211610399515 7.33659384353584 0.238516763107083 0.236944727770745 0.237801445437082 0.241415426917170 0.240620941633895 0.240358059271421 0.246637625317307 0.236944727770745 0.265208045901131 0.245023934938872 0.242917486446689 0.242360934312664 0.245152964541079 0.246397472247071 0.243543458523962 0.239301017992546 0.253700488601992 0.252170230921210 0.244730067076673 1 1 + 7510918 7511463 7511124.455 7508960 7511790 + gene protein_coding_gene FALSE TRUE AT1G21450.1 SCL1 (SCARECROW-LIKE 1); transcription factor Encodes a scarecrow-like protein (SCL1). Member of GRAS gene family. similar to PAT1 (PHYTOCHROME A SIGNAL TRANSDUCTION 1), transcription factor [Arabidopsis thaliana] (TAIR:AT5G48150.2); similar to GRAS6 [Solanum lycopersicum] (GB:ABD72962.1); contains InterPro domain GRAS transcription factor; (InterPro:IPR005202) -0.0279700311225350 -0.233402794459613 0.821036980710553 1 0.799920438273972 14.7842981407966 -0.0279700311225350 0.143321819302593
AT2G19810_at 7.10775660973161 7.53438434878216 5.41043273440004 6.11796759181919 8.41209812963682 7.5239722641393 5.49822408561903 5.61349564732196 4.27486286896591 4.81216610308277 4.0873733473709 4.633948538924 5.13286785873808 4.66014742584388 4.09559494940988 3.38618784281509 4.89962398975443 3.79903971780948 4.98204733941093 0.254741629970592 0.254695473172595 0.269635525879183 0.251090558368595 0.267347206786612 0.266352573194032 0.263857439962097 0.254949779939103 0.256448136332274 0.252480492507746 0.258864250490339 0.250738425125123 0.250738425125123 0.256334941486243 0.265413045095559 0.261621785466409 0.257256368953387 0.251913745191333 0.250738425125123 2 2 + 8558014 8558552 8558265.636 8557395 8558940 + gene protein_coding_gene FALSE TRUE AT2G19810.1 zinc finger (CCCH-type) family protein similar to zinc finger (CCCH-type) family protein [Arabidopsis thaliana] (TAIR:AT4G29190.1); similar to Zinc finger, CCCH-type [Medicago truncatula] (GB:ABE91976.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.0374041810742459 0.233080962906037 0.821278802324205 1 0.799842187347294 11.1655614577578 0.0374041810742459 0.210862111300187
AT4G11380_at 9.60240927708988 9.63119217873045 9.5214778176317 9.59642266530955 9.67995440085851 9.57210263080346 9.79554261805404 9.73353672608997 9.30262241674247 9.26307426449055 9.24251270014884 9.38519740877877 9.27346560373975 9.45122544423883 9.37198430835448 9.38307917765544 9.34030852525869 9.40483880915572 9.11171120056882 0.081648555633064 0.0766817704928542 0.0864306248747008 0.0793418449420267 0.0824901920710405 0.0829496340261186 0.0768355499711228 0.0765176996387581 0.0807249954619194 0.0776673209885554 0.0826795533264994 0.0765521860786379 0.0797031390968392 0.081292020369247 0.0818599739361478 0.0775153915693418 0.084544323599459 0.0766253268479789 0.0819794180622268 4 4|0 +|/ 6924609 6925349 6925029.1 6920496 6925964 + gene protein_coding_gene FALSE TRUE AT4G11380.1 beta-adaptin, putative similar to beta-adaptin, putative [Arabidopsis thaliana] (TAIR:AT4G23460.1); similar to Adapter-related protein complex 1 beta 1 subunit, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF96009.1); similar to Beta Adaptin CG12532-PA [Drosophila melanogaster] (GB:NP_523415.1); similar to ENSANGP00000013886 [Anopheles gambiae str. PEST] (GB:XP_321886.3); contains InterPro domain Adaptin, N-terminal; (InterPro:IPR002553); contains InterPro domain Alpha/gamma adaptin, C-terminal; (InterPro:IPR008152); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain AP2 clathrin adaptor, alpha and beta chain, appendage; (InterPro:IPR009028); contains InterPro domain Beta2-adaptin/TATA-box binding, C-terminal; (InterPro:IPR012295) 0.0162965242793751 0.233023327496472 0.821322111232759 1 0.79982818497387 18.9327693515377 0.0162965242793751 0.0256225652537219
AT2G38950_at 6.98214690947885 7.48176332274456 7.25980052158333 7.07477239042483 7.69308518148643 7.32737902604043 7.30423506859862 7.25809503820578 6.39987684313376 6.7853252954646 6.1950731724606 6.88018410458812 6.27676377004046 6.55945970235574 6.24139747105084 6.51931502040551 6.82508551055427 5.85915115247525 6.46369347365801 0.232467535019803 0.232227927792624 0.228008025064539 0.225626887355668 0.229838374242359 0.227215540702879 0.231239767312091 0.221412161465999 0.228466349333945 0.223469411008304 0.219600756824874 0.224287017077292 0.225096392062988 0.22689405431834 0.223215659280218 0.219600756824874 0.232617345451412 0.239265238766116 0.224126727518186 2 2 + 16271620 16272086 16271794.727 16267931 16272297 + gene protein_coding_gene FALSE TRUE AT2G38950.1 transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein similar to transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein [Arabidopsis thaliana] (TAIR:AT1G08620.1); similar to Os05g0302300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055137.1); similar to Os05g0196500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054867.1); similar to jumonji family protein [Brachypodium sylvaticum] (GB:CAJ75635.1); contains InterPro domain Transcription factor jumonji; (InterPro:IPR013129); contains InterPro domain Transcription factor jumonji/aspartyl beta-hydroxylase; (InterPro:IPR003347); contains InterPro domain Zinc finger, C5HC2-type; (InterPro:IPR004198); contains InterPro domain Transcription factor jumonji, JmjN; (InterPro:IPR003349) -0.0239394688169865 -0.232911878747738 0.821405858870236 1 0.799801118477275 13.7822524866921 -0.0239394688169865 0.112115098956581
AT3G19130_at 7.52201561143192 7.52723003970486 7.11910828668118 6.88607395131658 7.30534682760687 7.42493611103486 6.3270881799033 6.1655850563342 6.79395110763929 6.81101377407044 6.70166954003352 6.59571409736947 6.28882974535094 6.53611739413123 6.7072369162294 6.72647953454844 6.52494884665726 6.20902908835082 6.79159234611708 0.176095659891429 0.172216638145456 0.173786205060125 0.181008051603141 0.177579632818206 0.176379470948034 0.177519368379051 0.178455412200387 0.181480209625564 0.176820599906647 0.176375901211901 0.175558841632911 0.177205213922352 0.176130055681170 0.176600943426022 0.178438959656214 0.182279457782178 0.184099626331766 0.177983486889190 3 3 - 6611414 6612574 6611950.091 6611204 6614050 - gene protein_coding_gene FALSE TRUE AT3G19130.1 ATRBP47B (RNA-BINDING PROTEIN 47B); RNA binding similar to ATRBP47A (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47A), RNA binding [Arabidopsis thaliana] (TAIR:AT1G49600.1); similar to RNA-binding re (GB:ABE83383.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.0178936541872923 0.232382291818408 0.821803847488892 1 0.799672677283628 13.7022257853065 0.0178936541872923 0.0532595366209956
AT3G20500_at 9.55554998912935 9.66996154789633 9.7081825107097 9.92919359730882 9.73798059989788 9.67382170282465 10.0724891421172 10.0754795440698 8.72007191456338 9.15011079389952 8.7090092061886 8.60974443707778 9.22616227414135 8.88116259111326 8.69246466377843 9.00536788167343 9.10470140341662 8.99400452500387 8.69858350834811 0.123544950511227 0.123544950511227 0.125191759254396 0.124562808229504 0.124707179305203 0.125489590539416 0.124358448758189 0.123544950511227 0.129958326154542 0.126258299298578 0.132394286933547 0.127697815141914 0.125746144427135 0.129823494218036 0.123753861250715 0.123544950511227 0.128210695010362 0.125864174502303 0.127184727630795 3 3|0 +|/ 7159145 7160182 7159647.1 7157912 7160423 + gene protein_coding_gene FALSE TRUE AT3G20500.1 ATPAP18/PAP18 (purple acid phosphatase 18); acid phosphatase/ protein serine/threonine phosphatase similar to ATPAP22/PAP22 (purple acid phosphatase 22), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT3G52820.1); similar to putative purple acid phosphatase [Oryza sativa] (GB:AAG59669.1); similar to Os03g0568900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050513.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.0172518679612066 -0.23219288248836 0.821946203274893 1 0.799626809689954 18.6823735934456 -0.0172518679612066 0.0444791598907728
AT2G47330_at 7.15695048733017 7.19425334471863 6.95416653964639 6.95465525146088 7.16271321576458 7.32588576518665 7.00837000640012 6.88040088380642 6.79766788936457 6.70529931791479 6.87390299611333 6.69042691729816 6.74483493836991 6.45965337287941 6.50262191460516 6.60732735599246 6.75864236316584 6.68568921318602 6.71163798318726 0.150818897697436 0.158170274495645 0.150818897697436 0.151569460737929 0.150818897697436 0.156107681457173 0.152130294823159 0.153734545872710 0.158521280884247 0.158503727517764 0.150818897697436 0.155568885840767 0.153071434898738 0.16403707205298 0.158041483729124 0.153032107573794 0.168200451583154 0.15618106370241 0.160566014140733 2 2 - 19436289 19436892 19436564.727 19435967 19438762 - gene protein_coding_gene FALSE TRUE AT2G47330.1 DEAD/DEAH box helicase, putative Identical to DEAD-box ATP-dependent RNA helicase 24 (EC 3.6.1.-) (RH24) [Arabidopsis Thaliana] (GB:O22907;GB:Q93Z98); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.2); similar to hypothetical protein DDBDRAFT_0219351 [Dictyostelium discoideum AX4] (GB:XP_636700.1); similar to Os03g0308500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049904.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) -0.0167264168767307 -0.23169948891145 0.822317059446647 1 0.799507502130896 13.7814689938426 -0.0167264168767307 0.0364620547322790
AT1G49970_at 10.8630815830779 10.6996710885374 10.9451001892611 10.8952115428651 10.8615631796649 10.6933572535724 10.764959146856 10.7115936304446 10.6297507947649 10.9081606986348 10.7431015012016 10.5540437037864 10.6070360824383 10.7089874450172 10.6724099792146 10.8901128510521 10.6969442799981 10.6114477119005 10.683047778008 0.080744112781018 0.0768682147760577 0.0780854771984726 0.081908678840122 0.0792458060066407 0.0832212208457487 0.0747940611926272 0.0782975529802276 0.0933856395408697 0.0791037503636013 0.0752438481061276 0.0813970099039285 0.0766690366364833 0.0811797016654748 0.0777742565959934 0.0790521855026922 0.0817407361777285 0.0757319359661873 0.080210455668485 1 1|0 -|/ 18505604 18506719 18505989.1 18505238 18508277 - gene protein_coding_gene FALSE TRUE AT1G49970.1 CLPR1 (Clp protease proteolytic subunit 5); endopeptidase Clp Encodes a ClpP-related sequence. Though similar to ClpP proteins, this does not contains the highly conserved catalytic triad of Ser-type proteases (Ser-His-Asp). The name reflects nomenclature described in Adam et. al (2001). similar to endopeptidase Clp [Arabidopsis thaliana] (TAIR:AT1G09130.2); similar to ATP-dependent Clp protease proteolytic subunit [Guillardia theta] (GB:NP_113273.1); similar to Os05g0592100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056493.1); contains InterPro domain Peptidase S14, ClpP; (InterPro:IPR001907) 0.0170861831510440 0.231683663314766 0.82232895543747 1 0.799503679485453 21.5172323025159 0.0170861831510440 0.0425070231579521
AT2G23200_at 7.89182487250176 8.3679756436791 7.75606088762695 8.0516471685697 8.07444054170857 7.2885253775774 7.62589675891326 7.63760127399016 7.54872105424919 6.83061922488378 7.11017216031248 7.50064386337928 7.16271065518817 7.65835164071505 6.81831529579483 7.68361169197485 7.12100729136445 7.26722281737845 7.41213807164251 0.205454155022870 0.208307225626785 0.205846254390133 0.206950132840708 0.206645021757581 0.221585148837112 0.209279551882361 0.20880867392057 0.226626793933900 0.207745424848297 0.222423782894878 0.20398947132432 0.206916546804446 0.22389434381209 0.217970607761096 0.20398947132432 0.224159454935361 0.211511029476397 0.212520382542511 2 2 + 9888398 9888890 9888671.909 9886356 9888988 + gene protein_coding_gene FALSE TRUE AT2G23200.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G24010.1); similar to putative receptor-like protein kinase [Oryza sativa (japonica cultivar-group)] (GB:AAT07653.1); similar to Os06g0334300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057550.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0308639166560636 -0.230887351660141 0.82292759991667 1 0.799311664366026 15.1137868375402 -0.0308639166560636 0.167057407668655
AT1G10590_at 10.7555904843381 10.7600923508262 10.7210949995893 10.5837876874466 10.7483515848648 10.4775542421004 10.4545935440431 10.3736710726163 10.1523231075649 10.0685698319814 10.2590420003827 10.0866238746334 10.2179562060296 9.9833187233701 10.2180413650288 9.92715891024784 9.95577260396078 9.9258912124322 10.0273240040109 0.0697418326421622 0.0697418326421622 0.0704429881070223 0.0713325331114348 0.0718414532401622 0.0718341761879109 0.0713348336975677 0.0726756093299063 0.075639603715422 0.0711263578214932 0.0700013581563523 0.070987387972517 0.0700027824853918 0.0753169042921735 0.0739944816848016 0.0705464173388486 0.073521821834089 0.0717855717883838 0.0714602144589706 1 1 - 3502328 3502968 3502619 3502043 3503458 - gene protein_coding_gene FALSE TRUE AT1G10590.1|AT1G10590.2|AT1G10590.3 DNA-binding protein-related similar to DNA-binding protein-related [Arabidopsis thaliana] (TAIR:AT1G23750.1); similar to unknown [Medicago sativa] (GB:AAZ32857.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain nucleic acid binding, OB-fold, tRNA/helicase-type; (InterPro:IPR004365) 0.0178484481846484 0.230678116061373 0.82308491761843 1 0.799261319462432 20.6865742923263 0.0178484481846484 0.0543824692666305
AT4G25680_at 6.16221261884975 6.13416219395386 5.79925692860071 5.71360379462087 7.06442993163058 6.74161771150649 6.8766241591901 6.99616204242105 6.6408614936271 6.22992910356377 6.78212587419548 6.89231521618965 6.56395114270586 6.61029395343779 6.78718198586462 6.53888882186947 6.36221629864095 6.805336884521 6.3847084743672 0.241097693340502 0.235974319324152 0.250660248027348 0.248869269280400 0.237349529233290 0.247303351673188 0.236017370756253 0.240544621930255 0.243247596662332 0.236712438957364 0.24226862901184 0.23299924155118 0.246630316416583 0.240316695463070 0.23299924155118 0.235749500105043 0.243056035380911 0.23299924155118 0.241089016751444 4 4|0 +|/ 13089217 13089898 13089563.9 13088175 13090170 + gene protein_coding_gene FALSE TRUE AT4G25680.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G25660.1); similar to Protein of unknown function DUF862, eukaryotic [Medicago truncatula] (GB:ABE85315.1); similar to Os10g0533900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065158.1); contains InterPro domain Protein of unknown function DUF862, eukaryotic; (InterPro:IPR008580) 0.0183629598223554 0.229821676026397 0.823728936030675 1 0.799055717891971 12.9791529039454 0.0183629598223554 0.0615793375428525
AT2G40670_at 9.36212153831217 9.18416007396455 7.84169842045028 7.32457086999881 8.96998978962872 8.55777093394769 8.62542196675279 8.31095553589027 8.26982602688984 8.92705944928746 9.47066711457278 9.55740447209238 9.77087882230414 8.94044097833992 9.3693699552031 10.0916872365295 9.27860300937448 9.59617935837717 9.39455625292707 0.146468486845074 0.143588548048756 0.170815516230253 0.172397097297957 0.141227292967932 0.148056341021916 0.151244785312047 0.165587254778901 0.179744984575720 0.141227292967932 0.142862504702199 0.143653284958054 0.144781356575710 0.144565089199328 0.153006020743615 0.142923853869793 0.153405900035469 0.157104111655138 0.142673404264008 2 2|0 +|/ 16977342 16978173 16977695.8 16977336 16978285 + gene protein_coding_gene FALSE TRUE AT2G40670.1 ARR16 (response regulator 16); transcription regulator/ two-component response regulator response regulator 16 Identical to Two-component response regulator ARR16 (ARR16) [Arabidopsis Thaliana] (GB:Q9SHC2); similar to ARR17 (response regulator 17), transcription regulator/ two-component response regulator [Arabidopsis thaliana] (TAIR:AT3G56380.1); similar to type-A response regulator [Catharanthus roseus] (GB:AAQ10676.1); contains InterPro domain CheY-like; (InterPro:IPR011006); contains InterPro domain Response regulator receiver; (InterPro:IPR001789) -0.0257836582879254 -0.228992906332021 0.824352281366431 1 0.798857477454724 17.7086950301435 -0.0257836582879254 0.130413047085933
AT4G25940_at 7.9613088834848 7.66835272511519 7.58376916694832 6.94691104650482 7.75514989339217 7.20805816184029 5.97621438491533 5.52299410391882 7.29389305227514 6.43522398181928 6.13799554139067 6.30479415137703 6.1193314423101 6.366782103358 5.50632315426454 6.18786951953472 5.91490105183708 6.57603792575196 6.27486689978955 0.213308625882664 0.211486518384283 0.208064167107546 0.204951028494069 0.210849769703345 0.217601016077112 0.204830720567078 0.208094540468943 0.215932278199854 0.20739485586448 0.204830720567078 0.204830720567078 0.211365777110449 0.213380062896417 0.204830720567078 0.204852688981920 0.210316015865579 0.213115732515443 0.208106441544015 4 0|4 /|- 13169824 13170412 13170065.111 13169650 13172890 - gene protein_coding_gene FALSE TRUE AT4G25940.1 epsin N-terminal homology (ENTH) domain-containing protein Identical to Putative clathrin assembly protein At4g25940 [Arabidopsis Thaliana] (GB:Q8VYT2;GB:Q9SZG9); similar to epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related [Arabidopsis thaliana] (TAIR:AT5G57200.1); similar to Carbamoyl-phosphate synthase L chain, ATP-binding; ANTH [Medicago truncatula] (GB:ABE84582.1); contains InterPro domain Epsin, N-terminal; (InterPro:IPR001026); contains InterPro domain ANTH; (InterPro:IPR011417); contains InterPro domain Phosphoinositide-binding clathrin adaptor, N-terminal; (InterPro:IPR008943) 0.0312571297064415 0.228055508368988 0.825057488200016 1 0.798634105081085 13.4814692986930 0.0312571297064415 0.172719440469760
AT1G13750_at 8.12336220438858 8.34083395026924 7.4450904039647 7.53523309430071 7.34035039858435 6.97334522205963 5.04012932156118 4.88622086083211 7.72453392128719 5.44001863454417 5.39422778018759 6.44996180174447 5.35066293961552 6.33208725669655 5.17054885326629 5.3839541394057 5.03061378139211 5.91461838496228 6.01739439038176 0.233505478602179 0.230795122656003 0.234438300846550 0.229292984235965 0.231301842729847 0.230378712415969 0.244155351535202 0.232462902180582 0.237410300762276 0.237340615899604 0.235505518690157 0.228142798182392 0.233760218240754 0.228142798182392 0.240963377677753 0.231957502480809 0.256677885537278 0.228142798182392 0.228142798182392 1 1|0 -|/ 4715489 4716015 4715710.9 4715391 4718232 - gene protein_coding_gene FALSE TRUE AT1G13750.1 calcineurin-like phosphoesterase family protein similar to ATPAP24/PAP24 (purple acid phosphatase 24), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT4G24890.1); similar to ATPAP27/PAP27 (purple acid phosphatase 27), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT5G50400.1); similar to diphosphonucleotide phosphatase 1, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99049.1); similar to putative metallophosphatase [Lupinus luteus] (GB:CAD12837.1); similar to diphosphonucleotide phosphatase 1 [Lupinus luteus] (GB:CAD12836.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) -0.019889876390492 -0.227740408008037 0.825294576679588 1 0.798559222950447 12.9717290232767 -0.019889876390492 0.080017953807472
AFFX-DapX-5_at 6.02110956908366 6.19548723820619 6.9977554930728 6.09213826791621 7.65610345701429 5.9830600441013 7.70040437016218 6.11354490443588 7.25413742720707 7.7461604654617 7.9818445165791 8.0782185374339 7.36987201598773 7.76248479575633 7.58709088456402 7.9750513058199 7.27640311943157 6.89334613988213 7.95500670618136 0.132308243460221 0.128273859738968 0.132418418247611 0.129564416710530 0.126652476816210 0.132309739945735 0.127822778648074 0.131553854821681 0.126698033540325 0.124320117805033 0.124875755108143 0.124959992780305 0.126985870571434 0.127470190052347 0.127963204133647 0.123830462058318 0.128064252223176 0.127485633603288 0.122708560094852 NA NA NA NA NA FALSE FALSE 0.0691992549346498 0.227471892102777 0.825496628919131 1 0.79849549203983 14.2286039750233 0.0691992549346498 0.429780390224983
AT3G61860_at 9.83664595626828 9.75101390688323 9.83907069152578 9.90408985630592 9.91188281479115 9.58953597212734 9.1519279067348 9.05387237258059 9.451124275022 9.29009557763008 9.04453117478194 9.00860391897336 8.99258688517984 9.12042981127063 8.93825588847567 9.3706653810532 9.16543879270031 9.17923889493146 9.5460299167232 0.119708872337464 0.118554989051803 0.121067170265954 0.122236802308387 0.116818747148616 0.121379359802223 0.122459331592962 0.120409592393517 0.135633756827888 0.118679882272792 0.121422298728246 0.119328152809768 0.125690195889451 0.122669581065724 0.122685601972201 0.115591854397957 0.126221981527903 0.133746611386437 0.11635047278191 3 3 - 22911292 22911898 22911614.636 22911043 22913370 - gene protein_coding_gene FALSE TRUE AT3G61860.1 ATRSP31 (ARGININE/SERINE-RICH SPLICING FACTOR 31); RNA binding encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Identical to Arginine/serine-rich-splicing factor RSP31 (RSP31) [Arabidopsis Thaliana] (GB:P92964;GB:Q944A4;GB:Q9M278); similar to arginine/serine-rich splicing factor, putative [Arabidopsis thaliana] (TAIR:AT2G46610.1); similar to splicing factor-like protein [Vitis riparia] (GB:AAS00039.1); similar to Os04g0118900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052061.1); similar to ar (GB:AAT37131.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.018082692516602 0.226703689160641 0.826074760285873 1 0.798313572760124 18.8955309845918 0.018082692516602 0.0612043030187904
AT1G13320_at 9.30302029429876 9.4681943484623 9.45304882440277 9.3662591766806 9.47100888476138 9.43260747699577 9.41250445544904 9.52975105549597 9.32853412171794 9.03213741981028 9.21671273340036 9.1313023828719 9.22692199845798 8.95843761810827 9.28287937468787 9.09021815456348 8.98918975176988 8.991532970302 9.07731451102347 0.12189581310783 0.115729148478134 0.112856827420109 0.113641531558967 0.112856827420109 0.121308922815231 0.112856827420109 0.116727802748205 0.121392784062104 0.119983650090578 0.121060446829303 0.115335691490780 0.117180945273237 0.120371034056312 0.112856827420109 0.118744724088725 0.118964693454250 0.122339029696485 0.114751307836627 1 1 - 4563715 4564646 4564185.7 4563472 4567747 - gene protein_coding_gene FALSE TRUE AT1G13320.1|AT1G13320.2 PDF2 (PROTEIN PHOSPHATASE 2A SUBUNIT A3); protein phosphatase type 2A regulator one of three genes encoding the 65 kDa regulatory subunit of protein phosphatase 2A (PP2A) Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform (PP2A, subunit A, gamma isoform) (AtA gamma) (PP2AA3) [Arabidopsis Thaliana] (GB:Q38951;GB:Q8LPH9;GB:Q9FX65); similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.1); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29594.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357)|Identical to Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform (PP2A, subunit A, gamma isoform) (AtA gamma) (PP2AA3) [Arabidopsis Thaliana] (GB:Q38951;GB:Q8LPH9;GB:Q9FX65); similar to PDF1 (65 KDA REGULATORY SUBUNIT OF PROTEIN PHOSPHATASE 2A), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT3G25800.2); similar to RCN1 (ROOTS CURL IN NPA), protein phosphatase type 2A regulator [Arabidopsis thaliana] (TAIR:AT1G25490.1); similar to protein phosphatase 2A regulatory subunit A [Zea mays] (GB:AAY24685.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit beta isoform [Medicago sativa subsp. x varia] (GB:AAG29594.1); similar to Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha isoform [Medicago sativa subsp. x varia] (GB:AAG29593.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain HEAT; (InterPro:IPR000357) -0.0163662127733686 -0.224979205881833 0.827372972982173 1 0.797907407848194 18.5579966765037 -0.0163662127733686 0.038710260580857
AT1G18160_at 8.60481640598689 8.89352185665518 8.88076578981174 8.90746400214048 9.17061259240774 9.00049595478025 8.40295086563111 8.13041489669881 8.99586281877576 8.654001199657 8.50188342270431 8.51800321211972 8.41276001594281 8.43153254439737 8.02151224637849 8.57372795631744 8.50646434728097 8.65270562862515 9.03812709856972 0.136967847868214 0.139062974375837 0.137280435241689 0.136466330891973 0.137501553204016 0.147310690393645 0.134848303482848 0.133205563627031 0.136933931486221 0.132700911079985 0.134787138339334 0.133845926461076 0.131912212329218 0.134261990675362 0.143881879794691 0.135132672370511 0.136851879923533 0.139458693323391 0.130365289050671 1 1 + 6252736 6253791 6253411.455 6248786 6254032 + gene protein_coding_gene FALSE TRUE AT1G18160.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G73660.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G11850.1); similar to putative CTR1-like kinase kinase kinase [Oryza sativa (japonica cultivar-group)] (GB:BAD38153.1); similar to CTR1-like kinase kinase kinase [Brassica juncea] (GB:AAP86285.1); similar to hypothetical protein MtrDRAFT_AC139526g23v1 [Medicago truncatula] (GB:ABE80154.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0191176056310076 0.224536011688711 0.827706705819588 1 0.797803517563841 17.4230406508748 0.0191176056310076 0.0748907242164458
AT4G15780_at 7.27293328073343 8.17955738726178 6.83092816842432 6.90217978147717 8.5577500144013 8.18837417232382 7.67247218896116 7.16407195323843 7.83380095652375 6.75074458426862 8.0349939176676 7.92570918287234 6.95764153962559 7.60442938310662 6.10481929936988 7.51841808358005 6.53570788208483 6.73781460309561 7.28951705947556 0.284359826894907 0.260397146262825 0.275367219009053 0.272780437002116 0.25726715873271 0.25726715873271 0.269210823709337 0.274349512770140 0.281287074195390 0.278012045927369 0.25726715873271 0.25833820086098 0.273101749724559 0.258418459159912 0.286625381265909 0.25726715873271 0.265261634949181 0.273904979249400 0.266882138237812 4 4 - 8980752 8981668 8981338.111 8979890 8981773 - gene protein_coding_gene FALSE TRUE AT4G15780.1 ATVAMP724 (Arabidopsis thaliana vesicle-associated membrane protein 724) member of VAMP72 Gene Family similar to ATVAMP725 (Arabidopsis thaliana vesicle-associated membrane protein 725) [Arabidopsis thaliana] (TAIR:AT2G32670.1); similar to VAMP7B (VESICLE-ASSOCIATED MEMBRANE PROTEIN 7B) [Arabidopsis thaliana] (TAIR:AT1G04750.1); similar to SAR1 (SYNAPTOBREVIN-RELATED PROTEIN 1) [Arabidopsis thaliana] (TAIR:AT2G33120.1); similar to synptobrevin-related protein [Pyrus pyrifolia] (GB:AAQ15287.1); similar to Os07g0194000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059109.1); contains InterPro domain Synaptobrevin; (InterPro:IPR001388); contains InterPro domain Longin; (InterPro:IPR010908); contains InterPro domain Longin-like; (InterPro:IPR011012) -0.0331815660280208 -0.223679605278197 0.828351699163507 1 0.797603338207576 14.83043133661 -0.0331815660280208 0.191298086383182
AT2G36430_at 6.98591431945726 7.46535350323827 6.72387616050784 6.74652844878687 7.04778011001994 7.1275877728367 7.30029023292844 7.34511208427167 7.11257540511868 6.73308902672272 7.24624117591705 7.84900987461318 7.63453349667107 8.0475766305512 7.55527075910846 7.60968709949597 7.18625557149708 7.25944025031306 7.59184590952121 0.176719383677232 0.164636941127465 0.166699963119520 0.168184690105442 0.171282505809138 0.180719813497360 0.166423313648101 0.166463018873993 0.177700044388325 0.171053005807805 0.163071961279900 0.170207994632588 0.169946733282396 0.175291721663427 0.163750752564333 0.164448673370802 0.185495224449863 0.181537620382757 0.172807430359415 2 2 + 15298090 15298573 15298332.182 15297283 15298842 + gene protein_coding_gene FALSE TRUE AT2G36430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G22540.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAD45208.1); similar to Os04g0505400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053253.1); contains InterPro domain Protein of unknown function DUF247, plant; (InterPro:IPR004158) 0.0199703324403031 0.223506892868707 0.828481792342795 1 0.797563059343976 14.4399746478684 0.0199703324403031 0.0845586452508388
AT1G15100_at 4.55966383958579 4.96740925413108 4.71630762190751 5.1031048296074 4.73049957523795 4.66164923671890 5.1138380085652 5.90057019130533 4.1757713471832 4.36430695451834 4.61795539729422 4.50543347928775 4.7561514410866 4.32282310507416 4.63968779059991 5.29703496679767 4.88118789909329 3.87993338629823 4.12054963246959 0.250447184112580 0.246124286921582 0.245573959369113 0.247061088338338 0.246205331546246 0.248757683921959 0.248578600743806 0.246291814587753 0.245573959369113 0.245573959369113 0.248906603842081 0.245722466923697 0.265413959390991 0.249263120314645 0.246613421978313 0.245573959369113 0.245573959369113 0.250837090137134 0.250146273331792 1 1 - 5193707 5194128 5193910.818 5193421 5194198 - gene protein_coding_gene FALSE TRUE AT1G15100.1 RHA2A (RING-H2 finger A2A); protein binding / zinc ion binding Encodes a putative RING-H2 finger protein RHA2a. Identical to RING-H2 zinc finger protein RHA2a (RHA2A) [Arabidopsis Thaliana] (GB:Q9ZT50); similar to RHA2B (RING-H2 FINGER PROTEIN 2B), protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01150.1); similar to Os01g0266100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042675.1); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE94510.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0299183071360979 0.223131844102488 0.82876431175306 1 0.797475698706573 9.38549794192332 0.0299183071360979 0.167743118366395
AFFX-r2-P1-cre-3_at 14.0091031563970 14.2438484963349 14.4961827918242 14.3529274243654 14.1393003283586 14.1463952628664 14.1053455261278 14.2527580440311 2.45720138453562 2.45667986007504 2.56301156637735 2.26858130731115 2.06989309721657 2.81998816043909 2.76397472394959 2.45102008121396 2.35984781370007 2.20141672805192 2.68724393599275 0.327978786211273 0.32995091626137 0.328171986202297 0.329250805809037 0.328594756720669 0.327946325859901 0.328432672652949 0.330810801508373 0.303844721058236 0.338466285030087 0.331166091560798 0.335340139843009 0.331352291775150 0.319181298909520 0.328435473797085 0.328829303134848 0.333396742115128 0.310799984943182 0.331198682446707 NA NA NA NA NA FALSE FALSE 0.0172229686894761 0.222951716101216 0.828900009211434 1 0.79743379273807 16.7036951679466 0.0172229686894761 0.0540108744300886
AT3G47833_at 8.23178125735315 8.56202469347535 8.3074894251832 8.59999625697563 8.01923094967945 7.80945165214482 8.19293969801468 8.69470601391531 8.02688501998124 8.34568983867783 8.0005406972583 8.46878734428374 8.13371929966276 8.2532452961501 8.3080507969051 8.57639329575687 8.55990703599237 8.48440402546337 8.1061723801443 0.129711195380034 0.138466651665449 0.137252157232541 0.141470297060969 0.136403216357124 0.135794432792165 0.135888569029760 0.138572804619683 0.140127099540545 0.138016062827712 0.138113325665341 0.134689846350430 0.136246897509807 0.138597819701504 0.137949358164785 0.129711195380034 0.145732634946632 0.134377347418461 0.139164537203785 3 3|0 +|/ 17659713 17660790 17660158.875 17659608 17661125 + gene protein_coding_gene FALSE TRUE AT3G47833.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G62575.1); similar to Os09g0382500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063065.1) -0.0238861418471146 -0.222041430034342 0.829585855897274 1 0.797222529999221 16.5560591867770 -0.0238861418471146 0.121187422390459
AT2G28800_at 11.4056569579936 11.4170409253479 11.4895563957632 11.3962129206153 11.7762199819352 11.5932137926029 11.9258321571191 11.6962264520158 11.9815454812925 11.8153353260292 11.9839216867816 11.9586844031673 12.0488249721534 11.9853295017280 11.9073862300037 11.9032502399779 11.7170404371696 11.9633784554750 11.7588988949289 0.100437634921782 0.0915866777926378 0.100136819514555 0.0970913657350246 0.0927009458462344 0.0994247675566101 0.0925273880580117 0.0910493205479437 0.100617148069311 0.0909805876643137 0.093924057685079 0.0924786155946006 0.0917653889056233 0.0928740782942566 0.093442096703092 0.0910694997539207 0.0987406479313963 0.0975054879637961 0.0930224270133891 2 0|2 /|- 12363811 12364775 12364406.875 12363441 12366329 - gene protein_coding_gene FALSE TRUE AT2G28800.1|AT2G28800.2 ALB3 (ALBINO 3); protein translocase member of Chloroplast membrane protein ALBINO3 family Identical to Inner membrane protein ALBINO3, chloroplast precursor (ALB3) [Arabidopsis Thaliana] (GB:Q8LBP4;GB:O04665); similar to ALB4 (ALBINA 4) [Arabidopsis thaliana] (TAIR:AT1G24490.1); similar to Inner membrane protein PPF-1, chloroplast precursor (Post-floral-specific protein 1) (GB:Q9FY06); contains InterPro domain 60 kDa inner membrane insertion protein; (InterPro:IPR001708) 0.0170810365001317 0.221739461454482 0.82981340545217 1 0.797152636503364 23.4801967270361 0.0170810365001317 0.053353806498757
AT4G11100_at 6.91374005743846 7.03148837008743 6.55887083768633 6.56718796401449 6.78146936740482 6.31001685696553 6.81206330086156 6.81883786035764 6.49266628572996 6.63659877928916 7.31717363258631 7.4528884582803 6.80269305160264 6.94072742715781 7.7476298984002 7.0170929928546 6.61023792427409 6.93811357613688 7.04319547280972 0.163533228871736 0.158447659086956 0.159876144680099 0.164420204371495 0.154755390492419 0.166030658199637 0.160273126394373 0.153946325457219 0.169571159003261 0.161155134912714 0.154927261890224 0.157368166598821 0.158271216108736 0.164226308637396 0.159587241302996 0.150154862449162 0.164188996663661 0.160016111884564 0.152184695737158 4 4 + 6769437 6769925 6769732.818 6768610 6770180 + gene protein_coding_gene FALSE TRUE AT4G11100.1|AT4G11100.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G03060.1); similar to hypothetical protein PY04214 [Plasmodium yoelii yoelii str. 17XNL] (GB:XP_724473.1) 0.0197599834417552 0.221649409543872 0.82988126768926 1 0.79713181131791 13.6379458932376 0.0197599834417552 0.0841136824628645
AT4G17615_at 4.73608705768305 5.33606519035739 5.23684700559344 5.04280119057231 4.81109974073363 4.39665188995213 4.93170061249991 4.77689038271840 4.5004992816413 4.71351501922779 4.40980978507476 5.11618718733611 4.60124332109324 4.84206033463988 4.96027240763044 4.6050065773276 4.62644968861021 4.84637755630697 4.66716759617835 0.194877598751773 0.198077712918478 0.205491647959974 0.197914050234810 0.195427938573086 0.201299892493421 0.199024083086594 0.200645488820394 0.207324380923301 0.198605990704573 0.199443011530416 0.196520739445135 0.201636269666729 0.208078945743838 0.208852718686172 0.201364089391720 0.20085368233099 0.196574846632391 0.203169316844681 4 4|0 +|/ 9817197 9818981 9818375.3 9816465 9819325 + gene protein_coding_gene FALSE TRUE AT4G17615.1|AT4G17615.2 CBL1 (CALCINEURIN B-LIKE PROTEIN 1); calcium ion binding member of AtCBLs (Calcineurin B-like Calcium Sensor Proteins). Protein level is increased upon high salt, mannitol, and cold stresses. Identical to Calcineurin B-like protein 1 (SOS3-like calcium-binding protein 5) (CBL1) [Arabidopsis Thaliana] (GB:O81445;GB:O23603); similar to CBL9 (Calcineurin B-like protein 9), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G47100.1); similar to calcineurin B-like protein, putative [Brassica oleracea] (GB:ABD65178.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125)|Identical to Calcineurin B-like protein 1 (SOS3-like calcium-binding protein 5) (CBL1) [Arabidopsis Thaliana] (GB:O81445;GB:O23603); similar to CBL9 (Calcineurin B-like protein 9), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G47100.1); similar to calcineurin B-like protein, putative [Brassica oleracea] (GB:ABD65178.1); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain Recoverin; (InterPro:IPR001125) 0.0252646854007244 0.221238269140733 0.83019111820474 1 0.797036838138748 9.59751112856455 0.0252646854007244 0.133303858840371
AT4G20980_at 6.9068376273589 7.51026923526839 7.3297482635073 7.23271160367532 7.1973404166736 6.92749089421593 7.54877869026815 7.48962681500527 6.68002021554394 6.59242090846675 7.0820458447145 7.27382565259262 6.60053852486284 6.70934403324531 7.12110030398076 7.03403292552152 6.46157934207989 6.93883928800008 6.72051030012632 0.166836567759409 0.158712641436714 0.166343526923436 0.171204122281500 0.162380498152284 0.184030967280978 0.165993360172687 0.158712641436714 0.178339955937072 0.175591235711324 0.160343535575992 0.164712535499296 0.161867746346226 0.169562577508059 0.158712641436714 0.163631745124952 0.172875122368691 0.167620766555831 0.168019477323 4 4 + 11218204 11218682 11218461.818 11216942 11219348 + gene protein_coding_gene FALSE TRUE AT4G20980.1|AT4G20980.2|AT4G20980.3 eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative|translation initiation factor Identical to Eukaryotic translation initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3d) (p66) (TIF3D1) [Arabidopsis Thaliana] (GB:P56820); similar to eukaryotic translation initiation factor 3 subunit 7, putative / eIF-3 zeta, putative / eIF3d, putative [Arabidopsis thaliana] (TAIR:AT5G44320.1); similar to eukaryotic translation initiation factor 3 (eIF-3), putative [Musa acuminata] (GB:ABF69959.1); similar to Os05g0566500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056343.1); similar to putative eukaryotic translation initiation factor (eIF3d) [Oryza sativa (japonica cultivar-group)] (GB:AAU10658.1); contains InterPro domain Eukaryotic translation initiation factor 3, subunit 7; (InterPro:IPR007783) 0.0231454002692735 0.220739852307964 0.830566785489486 1 0.796921937701627 14.0513406336235 0.0231454002692735 0.1160709931237
AT4G09680_at 5.57508664740378 4.7299104581107 5.14639652050648 4.9244325467027 6.03942414504925 4.87198649875181 5.38434519799613 5.15842932776142 4.62837248102235 5.60927763143524 5.16516971113957 5.33166978768542 5.17643123350213 5.46073128985139 5.02529974399475 5.69115194932069 4.82172409152649 4.17279438713375 5.42911703296927 0.204901681175783 0.19992908260853 0.212142085706456 0.205463691984228 0.205600186305512 0.227620978801507 0.204534698244688 0.200617619090535 0.237044226325199 0.217667075643274 0.205978496015607 0.204552333593684 0.205183479226053 0.213835617811938 0.19992908260853 0.200719207181541 0.215635606502679 0.216302301186166 0.200715044926478 4 4|0 +|/ 6122087 6123051 6122547.8 6116759 6123301 + gene protein_coding_gene FALSE TRUE AT4G09680.1 similar to Os09g0376000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063041.1) -0.0415085854692289 -0.219887814662392 0.831209090694338 1 0.796726109596068 10.3926900374911 -0.0415085854692289 0.255367910158447
AT2G16430_at 10.4570271533761 10.4965044721601 10.6364070834476 10.6521077466629 10.5364601289542 10.0382171031952 11.0620328411821 10.9634456791410 10.2969780524618 10.4160174112440 10.7171764566794 10.4421474107859 10.3138424658584 10.5103467182258 10.3787127656288 10.4443051688045 10.8759330931113 10.8257654194432 10.0210422867542 0.0778517045231077 0.0736784833958063 0.0764845722693806 0.0753943188642039 0.0728261758369039 0.076696371774712 0.0753341940842981 0.0751063765413558 0.082951605416545 0.0745602491064972 0.0741698963046664 0.0728261758369039 0.0729606025480823 0.0728261758369039 0.0774059116290964 0.0728261758369039 0.0794705304892817 0.0759028531256496 0.0743630638528136 2 2 - 7127682 7128400 7127983.364 7127501 7129914 - gene protein_coding_gene FALSE TRUE AT2G16430.1|AT2G16430.2 PAP10; protein serine/threonine phosphatase|PAP10; acid phosphatase/ protein serine/threonine phosphatase similar to PAP1 (PURPLE ACID PHOSPHATASE 1), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G27190.1); similar to purple acid phosphatase [Medicago truncatula] (GB:AAX20028.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843)|similar to PAP1 (PURPLE ACID PHOSPHATASE 1), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G27190.1); similar to purple acid phosphatase [Nicotiana tabacum] (GB:BAC55155.1); similar to purple acid phosphatase [Medicago truncatula] (GB:AAX20028.1); similar to purple acid phosphatase [Ipomoea batatas] (GB:CAA06921.1); contains InterPro domain Fibronectin, type III-like fold; (InterPro:IPR008957); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.0199474581319923 0.219174164433120 0.831747176164012 1 0.796562663509861 21.0093792447501 0.0199474581319923 0.0882019592113226
AT3G46430_at 9.61575720281715 9.99288905982834 9.73964072707283 9.6703879196561 9.8852575643018 9.45554546988777 9.9956983659901 9.94937669090759 9.52764269770125 9.47887020009895 9.76865287971587 9.99777912996394 9.44504826805816 9.69945570452927 9.49680220282405 9.67461508862736 9.32923709981455 9.38094391217289 9.31542638749977 0.122158505036359 0.120828599364620 0.126034254763565 0.127871938183598 0.122248486211511 0.129955510224229 0.118463715970175 0.125418491869853 0.124774936924372 0.125704662082575 0.117622419573303 0.122765904847578 0.119475146441924 0.125492442402347 0.123798104038049 0.123316456727888 0.138112851229988 0.127857919730399 0.121690911297393 3 3|0 +|/ 17098706 17098972 17098862.6 17098672 17099482 + gene protein_coding_gene FALSE TRUE AT3G46430.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G59613.1); similar to mitochondrial ATP synthase 6 KD subunit [Oryza sativa (japonica cultivar-group)] (GB:BAB21526.1) -0.0211510261881172 -0.218863848233777 0.831981180853408 1 0.796491756070528 19.307925732131 -0.0211510261881172 0.0999864517075223
AT3G52760_at 6.16591817548194 6.96883026498 6.43175455790121 6.7847646972985 7.08303914013952 6.99772371138264 7.07540524246176 6.61136256466498 6.3501089777888 5.73735157582671 5.95040516175858 6.10005924981114 5.70227251527738 5.88734872880784 5.64699969818205 6.13185492498681 5.41595555061483 5.63244452482278 5.51512349997147 0.311909932148463 0.309879852679496 0.311450851082719 0.310586034025629 0.303764856934855 0.307879157902634 0.310921159604196 0.303764856934855 0.323431060871850 0.311420098028145 0.313801138307954 0.303764856934855 0.314769676134740 0.311114650310741 0.304888502402321 0.304667172985371 0.316797817250974 0.308546812056235 0.306454149289384 3 3 - 19564923 19565474 19565202.818 19564657 19565790 - gene protein_coding_gene FALSE TRUE AT3G52760.1 integral membrane Yip1 family protein similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT2G36300.1); similar to Protein of unknown function DUF649 [Medicago truncatula] (GB:ABE77839.1); contains InterPro domain Yip1 domain; (InterPro:IPR006977) 0.0299154956018205 0.218618229739679 0.832166410534698 1 0.796435702467688 12.6028225753613 0.0299154956018205 0.172352220655936
AT2G19480_at 8.35542725966843 8.54733096714408 8.63334721172629 8.48746686681748 8.77901264396835 8.44154400225145 8.60792741545818 8.52826121509904 8.7447871594803 8.64763537626586 8.74216227982179 8.69038281462512 8.357014852479 8.54004179574088 8.81789788835383 8.58038417221726 8.44474780771187 8.27620380426 8.61317345895992 0.130560367133098 0.120839660647739 0.135858794699149 0.125032825118937 0.136570262280666 0.126776706655268 0.128193130301786 0.129630964615813 0.135566044868380 0.123878879835063 0.124435502313845 0.124426890060162 0.128232074694221 0.128276642173301 0.126550123410272 0.120160979025191 0.129685641099801 0.126129467004384 0.127552668721798 2 2|0 +|/ 8447140 8448093 8447584.375 8445538 8448430 + gene protein_coding_gene FALSE TRUE AT2G19480.1|AT2G19480.2 NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN1;2); DNA binding|NAP1;2 (NUCLEOSOME ASSEMBLY PROTEIN1;2) similar to NAP1,3 (NUCLEOSOME ASSEMBLY PROTEIN1,3), DNA binding [Arabidopsis thaliana] (TAIR:AT5G56950.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession Number JS0707 (GB:AAA50234.1); contains InterPro domain Spectrin repeat; (InterPro:IPR002017); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164)|similar to NAP1,3 (NUCLEOSOME ASSEMBLY PROTEIN1,3), DNA binding [Arabidopsis thaliana] (TAIR:AT5G56950.1); similar to nucleosome assembly protein I-like protein; similar to mouse nap I, PIR Accession Number JS0707 (GB:AAA50234.1); contains InterPro domain Nucleosome assembly protein (NAP); (InterPro:IPR002164) -0.0184108022428418 -0.218161532611138 0.832510851568005 1 0.796331643054484 17.1598579103349 -0.0184108022428418 0.0730815183999124
AT1G20050_at 8.93757655693427 8.95647114924803 8.70350230516175 8.5821085942375 9.06819488060235 8.36270679309494 8.95703690597062 8.60525506016801 8.08337611514787 7.98289021065454 8.03534067903372 8.62923451685244 8.21013418133498 8.12977675021476 8.43452224097176 7.96811371880369 8.24809403734114 8.19071075723025 7.91869357801545 0.150223353305640 0.158442530894830 0.167442916686485 0.155814822829797 0.15313279323301 0.161960780146549 0.155332667013399 0.153371752495176 0.16960636889491 0.161437165338531 0.163704796300556 0.154590207740819 0.15385841300601 0.161963672925157 0.161114621086765 0.149508831121573 0.163271084273025 0.155048385098423 0.163528446468718 1 1|0 +|/ 6949469 6950013 6949746.8 6949034 6950310 + gene protein_coding_gene FALSE TRUE AT1G20050.1 HYD1 (Hydra 1) C-8 sterol isomerase Identical to Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase (EC 5.3.3.5) (Cholestenol Delta-isomerase) (Delta(8)-Delta(7) sterol isomerase) (D8-D7 sterol isomerase) [Arabidopsis Thaliana] (GB:O48962;GB:Q9SAQ8); similar to Os01g0103600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001041757.1); similar to sterol-8,7-isomerase [Zea mays] (GB:AAT02417.1); contains InterPro domain Emopamil-binding; (InterPro:IPR007905) 0.025398725405394 0.217337546201184 0.833132398783432 1 0.796144439917499 16.8844702780916 0.025398725405394 0.138070874521559
AT4G38040_at 6.73485217357877 6.95749110399784 6.27449203102367 6.61215422427205 6.93843045965948 6.9349667799566 6.84088895139892 7.06372007265004 7.2929694244903 7.22173248223404 7.85826319967418 7.60669734846467 7.86742226809097 7.46180127041097 7.51392439364333 7.2632023422339 7.08791699456515 7.02323811085084 7.12505106892508 0.186882922126542 0.185862606880578 0.189553662681401 0.189116150892057 0.193165474572119 0.192268033812655 0.189294710222715 0.199823054874644 0.204929193389548 0.186731348402522 0.19406612572381 0.18289203138439 0.190446026420745 0.194304231695248 0.195112281099361 0.182813084192240 0.198940902648727 0.189032255668141 0.189526630304339 4 4|0 +|/ 17868294 17869100 17868696.4 17867432 17869296 + gene protein_coding_gene FALSE TRUE AT4G38040.1 exostosin family protein similar to exostosin family protein [Arabidopsis thaliana] (TAIR:AT5G11610.1); similar to pectin-glucuronyltransferase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD37522.1); similar to Os02g0187200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046127.1); contains InterPro domain Exostosin-like; (InterPro:IPR004263) 0.0189150237150866 0.216689877824791 0.833621033227069 1 0.79599778616688 14.1314040910046 0.0189150237150866 0.079914829194469
AT3G14560_at 6.80777833585078 7.27041418151878 6.73728819384304 7.36880269325179 7.68224907007475 6.6784802576661 8.43101904409047 8.61763267913224 6.561487004209 7.3168409155613 7.63687388243166 7.41279360647673 8.04847392733191 7.9059313993241 6.79803319333846 8.12623779409463 7.90830517216278 7.91426097635675 7.50005975183644 0.207943556225794 0.190543749821635 0.209203849254754 0.199317897981192 0.192522430501042 0.214024433816808 0.199105900745705 0.193697670395022 0.207298541066043 0.191646422601273 0.195810818489200 0.195803473631860 0.194044211165095 0.193795332389141 0.19827731897121 0.187863386572566 0.206839086469787 0.193658530210577 0.193460648962352 3 3 + 4889376 4889789 4889546 4889079 4890166 + gene protein_coding_gene FALSE TRUE AT3G14560.1 unknown protein -0.0361357431842169 -0.215241302962693 0.834714188773394 1 0.795671346008909 14.8717045408328 -0.0361357431842169 0.222644020052393
AT2G17230_at 5.38562845307855 5.98484666539029 4.61002870388505 5.21030243224993 5.02657924589657 5.75819049915234 6.769499456608 6.80246366884989 6.78139836263868 4.89256233722601 8.3856048616737 6.93409684971509 7.54904899420358 8.19541382168467 6.54944004935683 5.74038438935858 4.55098321464823 6.25429165410262 5.57405444240596 0.233462445043687 0.228059200315855 0.238848368583989 0.230381422816353 0.233439798812125 0.239532188649607 0.231361971743146 0.237144424664932 0.248636289207282 0.231015056273322 0.249903861378561 0.228059200315855 0.244830406815122 0.237959577105063 0.236381473319065 0.230558711794587 0.256041497948591 0.241116468982342 0.228059200315855 2 2 - 7501985 7502548 7502358.909 7501618 7503098 - gene protein_coding_gene FALSE TRUE AT2G17230.1 phosphate-responsive 1 family protein similar to phosphate-responsive 1 family protein [Arabidopsis thaliana] (TAIR:AT2G35150.1); similar to unknown [Sorghum bicolor] (GB:AAQ06267.1); contains InterPro domain Phosphate-induced protein 1 conserved region; (InterPro:IPR006766) -0.0318823710498409 -0.212606976345631 0.83670313314608 1 0.795083240339237 11.9530655706887 -0.0318823710498409 0.193924154399485
AT2G40980_at 4.79750285879431 5.3590355222688 4.83788699861588 4.8867745927931 5.32755573608219 4.88927252929285 5.52624981769942 5.7185441336186 4.68226630910126 4.38541514520671 5.02999479811665 5.0953050111448 5.12166069897015 5.3207568983569 5.10229775852881 4.99379955582282 4.7134067573356 4.90437789229883 4.80120540025036 0.211002339719371 0.200090980896508 0.200090980896508 0.201431733146261 0.201054727498964 0.204134014189856 0.201506058719539 0.200090980896508 0.202083747303110 0.203347354458577 0.202817643326792 0.201305705442018 0.200090980896508 0.201085824562387 0.203244921499348 0.200090980896508 0.210849670671926 0.203283658725707 0.202976231927672 2 2 + 17110922 17111418 17111150.182 17109168 17111880 + gene protein_coding_gene FALSE TRUE AT2G40980.1 similar to Os02g0502500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046902.1); similar to Tyrosine protein kinase, active site [Medicago truncatula] (GB:ABE91556.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009) 0.0236385087848857 0.212481320199828 0.836798035967398 1 0.795055366866062 9.99693387673294 0.0236385087848857 0.127964323300196
AT4G24020_at 7.6707558680719 7.74265601630208 7.78941480271844 7.81113751572298 8.4045681839618 8.11197582623809 7.71201446570616 7.67244461796419 8.20000919598643 7.90403830183512 7.78056764814469 7.30356323895403 7.98277565790462 7.80917092257624 7.14489775963684 7.9983420679612 7.85763509136636 7.93332520922823 7.96715933000379 0.166563329175026 0.156750109423018 0.164668921074260 0.171290017894314 0.157718633224907 0.161693954111598 0.158952484204839 0.160745545791038 0.158701633116391 0.167282371940247 0.165970985354018 0.167008734110986 0.167108518307458 0.166616306010457 0.163484672240170 0.162748599724605 0.168647350695359 0.160718235836783 0.160694857078457 4 4 + 12483255 12483797 12483492.909 12479796 12484003 + gene protein_coding_gene FALSE TRUE AT4G24020.1 RWP-RK domain-containing protein similar to RWP-RK domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G64530.1); similar to Os01g0236700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042530.1); similar to OSIGBa0159F11.11 [Oryza sativa (indica cultivar-group)] (GB:CAH67387.1); similar to RWP-RK domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA92484.2); contains InterPro domain Plant regulator RWP-RK; (InterPro:IPR003035); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.0161777151728313 0.210579267917666 0.838234919913971 1 0.794635437093747 15.7393810664590 0.0161777151728313 0.0527227920200391
AT1G12930_at 5.52423075450372 5.0474696327217 5.00544471707439 4.72568278516846 5.46308938346166 4.82706705470333 5.30004477489705 5.25442703648911 4.53287501058382 4.49212715312053 4.68099133717995 4.94675042670911 5.15506380493678 5.23704023976341 4.47121114446963 5.40210929611543 5.05740063697687 4.00379117876096 4.90672883576822 0.210678881891234 0.210904776689726 0.210474894859883 0.218902272336506 0.216458175240984 0.21232586695945 0.219541813830382 0.220268310581827 0.211991022261484 0.217028616808427 0.216494399747827 0.208750153262583 0.212702423857862 0.212818268683116 0.213058535123678 0.213635659565061 0.226388481294239 0.219323046051447 0.212540758316162 1 1|0 -|/ 4398730 4399374 4399120.111 4398373 4405602 - gene protein_coding_gene FALSE TRUE AT1G12930.1 importin-related similar to transportin-SR-related [Arabidopsis thaliana] (TAIR:AT5G62600.1); similar to Os11g0543700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068046.1); similar to importin, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA94152.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Exportin 1-like; (InterPro:IPR013598) -0.0254188197972198 -0.209398787049338 0.839127023485122 1 0.794376691640119 9.9000345630132 -0.0254188197972198 0.146041453830833
AT3G02570_at 9.05398307059409 8.88690098909114 7.919318265032 7.59144818524506 8.57647730072828 8.45203813991462 8.45926471290224 8.58222273899238 8.94021121654815 8.4791828806304 9.97608221180117 9.59976630640663 9.28025371345589 9.518001470779 9.5779384195554 8.8762824609119 8.2897602234046 9.33933908179044 8.56522965785039 0.135554254135926 0.135974065495097 0.141538002519076 0.144124486936082 0.133231797978020 0.137337328864551 0.135077092341399 0.136484988893975 0.143153848625547 0.138007872767336 0.135929306857229 0.135802362521312 0.130979972192683 0.136080896843739 0.137822456854901 0.132879736645021 0.145763573221923 0.135242588982441 0.136964778216572 3 3 - 543538 544042 543868.455 543353 545602 - gene protein_coding_gene FALSE TRUE AT3G02570.1 MEE31 (maternal effect embryo arrest 31); mannose-6-phosphate isomerase similar to DIN9 (DARK INDUCIBLE 9), mannose-6-phosphate isomerase [Arabidopsis thaliana] (TAIR:AT1G67070.1); similar to phosphomannose isomerase [Cyamopsis tetragonoloba] (GB:AAX31279.1); contains InterPro domain Mannose-6-phosphate isomerase, type I; (InterPro:IPR001250); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051) 0.0174321645859226 0.20916156283413 0.83930632634335 1 0.794324868880118 17.4245662941572 0.0174321645859226 0.0705118638285767
AT1G76490_at 10.4749230598517 10.5485222886708 10.0271928795351 10.2344076736362 10.5077486817543 10.4507715050001 10.2930265352281 10.5976509971592 11.1221773768574 10.3039513422719 11.3151277574408 10.9430932256962 11.1531197789391 10.9150448014016 11.0702211089944 10.8728262073280 10.4367897821554 10.8665947095720 10.7912533567509 0.0652934621407479 0.0645914451198694 0.0716230553245126 0.0645914451198694 0.0683621744194295 0.0741737574869219 0.0676599309774589 0.0662188841761032 0.0702113402204763 0.0685864910276918 0.0645914451198694 0.0645914451198694 0.0650119740751694 0.0664112862564182 0.0661619179237781 0.0645914451198694 0.0663044090680432 0.0681639557627016 0.0661045716533587 1 1 + 28702421 28703054 28702707.455 28700654 28703687 + gene protein_coding_gene FALSE TRUE AT1G76490.1 HMG1 (3-HYDROXY-3-METHYLGLUTARYL COA REDUCTASE) Encodes a 3-hydroxy-3-methylglutaryl coenzyme A reductase, which is involved in melavonate biosynthesis and performs the first committed step in isoprenoid biosynthesis. Expression is activated in dark in leaf tissue but not controlled by light in the root (confine Identical to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (EC 1.1.1.34) (HMG- CoA reductase 1) (HMGR1) (HMG1) [Arabidopsis Thaliana] (GB:P14891); similar to HMG2 (3-hydroxy-3-methylglutaryl-CoA reductase 2) [Arabidopsis thaliana] (TAIR:AT2G17370.1); similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 (HMG-CoA reductase 1) (GB:P29057); similar to hydroxymethylglutaryl-CoA reductase (NADPH) [Raphanus sativus] (GB:CAA48611.1); similar to hydroxymethylglutaryl-CoA reductase (NADPH) [Raphanus sativus] (GB:CAA48610.1); contains InterPro domain 3-hydroxy-3-methylglutaryl Coenzyme A reductase; (InterPro:IPR004554); contains InterPro domain Hydroxymethylglutaryl-coenzyme A reductase; (InterPro:IPR002202); contains InterPro domain Hydroxymethylglutaryl-CoA reductase, NAD-binding; (InterPro:IPR009023); contains InterPro domain Hydroxymethylglutaryl-CoA reductase, substrate-binding; (InterPro:IPR009029) 0.0169871387841030 0.208502689547715 0.839804379128858 1 0.794181239636707 21.2346452176383 0.0169871387841030 0.0657601526308892
AT2G35330_at 4.86823203969923 5.05803719392464 5.07188771478213 4.84221092086811 5.09406354855256 4.68161529424876 4.42889196869014 4.86744640485116 4.97640820319281 5.04846844959988 5.07904361457437 4.99210632861783 4.66112587059831 5.00848374601328 4.48993178698752 5.27485958436985 4.62717997524859 4.9215164989037 5.10211985139178 0.225860039651691 0.225678729386868 0.22598939788886 0.222898630322383 0.218363226767990 0.224653769143731 0.227492090632755 0.220526723599474 0.224757142751943 0.233425065918171 0.220502559193538 0.218363226767990 0.218363226767990 0.232389638869519 0.22977492411089 0.223596155602822 0.231333991131575 0.236912832457988 0.219662642848011 2 2 + 14877919 14878724 14878501.273 14876068 14879019 + gene protein_coding_gene FALSE TRUE AT2G35330.1 zinc finger (C3HC4-type RING finger) protein-related similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G32530.1); similar to Os05g0141500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054605.1); similar to Os09g0371700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063022.1); similar to hypothetical protein SNOG_03129 [Phaeosphaeria nodorum SN15] (GB:EAT89860.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0218793872878548 -0.208482286690697 0.839819803189818 1 0.794176799127114 9.82610468256492 -0.0218793872878548 0.116245982179235
AT2G37160_at 5.57142144215219 5.9659433755894 5.87866934523467 5.78619434621317 5.94727249615762 5.77485009020251 5.99470915031115 5.74232398579174 5.623002891814 5.11504027019328 5.25971680636224 5.0266044279445 4.73386562444995 5.41999253799034 5.47287801895298 5.2382121329183 5.37610371671421 5.36955782318504 5.17121753182647 0.210968265798487 0.213262664980327 0.209471718226736 0.217251981068299 0.20857292602112 0.218495488786165 0.208587197994372 0.207350514664606 0.205231346627536 0.219216666447513 0.209431567187087 0.215361798922887 0.216018810795324 0.218925828231523 0.218028240364533 0.210873564661772 0.210755965167928 0.213959717543552 0.212527849223082 2 2 + 15618344 15619655 15619232.667 15615906 15620013 + gene protein_coding_gene FALSE TRUE AT2G37160.1|AT2G37160.2 nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT3G53390.1); similar to Os12g0172500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066281.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96577.2); similar to WD40-like [Medicago truncatula] (GB:ABE83445.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0189117154445051 -0.208178399284082 0.840049543279873 1 0.794110711472685 11.1027746709612 -0.0189117154445051 0.0878372932918046
AT2G23450_at 7.88829695891863 8.44119839657505 7.9457893689863 8.32416142352835 8.40190116166624 7.88588076848389 7.62028334588781 7.70850830747937 7.2188099708994 7.48243641708103 7.03441815726637 7.35047402374806 7.12667964416645 7.39566449362162 6.21611772024953 7.5773983722119 7.38612352276845 7.16692041968425 7.59578338990046 0.199418378840990 0.193798098806736 0.198532179439609 0.196205291818485 0.192949303299786 0.195707004098071 0.196537103044269 0.199904221984151 0.223397483117745 0.193075145299226 0.195775511313732 0.192949303299786 0.193284085245414 0.194685908685882 0.197133290045699 0.192949303299786 0.199641391280284 0.206646584965992 0.193583410867276 2 2 - 9996037 9996574 9996336.636 9995834 9998775 - gene protein_coding_gene FALSE TRUE AT2G23450.1|AT2G23450.2 protein kinase family protein Identical to Wall-associated receptor kinase-like 14 precursor (EC 2.7.11.-) (WAKL14) [Arabidopsis Thaliana] (GB:Q8RY67;GB:O80461); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G66790.1); similar to WAK-like kinase [Lycopersicon esculentum] (GB:AAS45124.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.0253786433140351 -0.207988299655065 0.840193267585495 1 0.794069418197802 15.3215363681948 -0.0253786433140351 0.147139833635720
AT4G16760_at 9.63934299596322 9.96617352032118 9.99097532320376 10.1538673827445 9.8160679412514 9.6141456655132 9.75799650759348 9.80012992170695 8.83753146807055 9.63008601621471 9.1554774042536 9.14108890659792 9.40863742448672 9.21856762448488 8.80884072312475 9.4186685793962 9.42629405377045 9.23277643757277 9.41487640439303 0.121011549912794 0.120154552104751 0.121411073240563 0.123066235717570 0.121010108215964 0.124795214564803 0.125910942189595 0.124410637607541 0.126460487558610 0.121808453892660 0.118391372343893 0.119711305703038 0.124844007647862 0.126074270531929 0.129595131292769 0.115460628018288 0.130278813538271 0.125247105405267 0.120232893499490 4 4|0 -|/ 9424949 9425740 9425210.4 9424655 9428875 - gene protein_coding_gene FALSE TRUE AT4G16760.1 ACX1 (ACYL-COA OXIDASE 1) Encodes a medium to long-chain acyl-CoA oxidase. Catalyzing the first step of fatty acid beta-oxidation. Gene expression is induced by wounding, drought stress, abscisic acid, and jasmonate. Identical to Acyl-coenzyme A oxidase 1, peroxisomal (EC 1.3.3.6) (AOX 1) (Long- chain acyl-CoA oxidase) (AtCX1) (ACX1) [Arabidopsis Thaliana] (GB:O65202;GB:O23518); similar to ACX5 (ACYL-COA OXIDASE 5), acyl-CoA oxidase [Arabidopsis thaliana] (TAIR:AT2G35690.1); similar to peroxisomal acyl-CoA oxidase 1A [Lycopersicon esculentum] (GB:AAW78689.1); similar to Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) (GB:2FON); similar to acyl-CoA oxidase [Medicago truncatula] (GB:ABE83706.1); contains InterPro domain Acyl-CoA oxidase, C-terminal; (InterPro:IPR002655); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) 0.0174913032167370 0.207774055615476 0.840355253789679 1 0.794022925019015 19.1025666691724 0.0174913032167370 0.0725798449425367
AT1G19580_at 6.4044769818426 6.8443195987104 6.16458841029362 6.14132241153772 5.95421020984998 5.78935378985475 6.74560091501357 6.76357737027091 5.1420480126468 5.56515888720614 6.28369088272746 6.57566401090193 6.18468082929896 5.9546518898098 6.21208432457242 6.06269526690343 5.37991537072869 5.7185827139564 5.50998070449095 0.232744148444097 0.239684787313797 0.242195577169155 0.236072689918207 0.232744148444097 0.256422866270617 0.232744148444097 0.238104902697104 0.256206842244139 0.232823705723733 0.236243433599741 0.232744148444097 0.240343742543619 0.242116711366439 0.232744148444097 0.237118793604396 0.251304880446925 0.248396639011865 0.240820679174333 1 1 + 6776049 6777054 6776657.909 6774754 6777447 + gene protein_coding_gene FALSE TRUE AT1G19580.1 GAMMA CA1 (GAMMA CARBONIC ANHYDRASE 1); carbonate dehydratase Encodes mitochondrial gamma carbonic anhydrase. Component of the NADH dehydrogenase complex. similar to APFI, carbonate dehydratase [Arabidopsis thaliana] (TAIR:AT1G47260.1); similar to transcription factor APFI-like [Solanum tuberosum] (GB:ABB86281.1); contains InterPro domain Bacterial transferase hexapeptide repeat; (InterPro:IPR001451); contains InterPro domain Trimeric LpxA-like; (InterPro:IPR011004) -0.0181792757054653 -0.206670800405667 0.841189532871109 1 0.793784257676971 12.0770436422019 -0.0181792757054653 0.0814467442372168
AT2G31670_at 9.0721584201526 9.37003409479 9.24236373898717 9.17256892931884 9.06617252272448 9.01779167400806 9.65519518635912 9.99112941675262 8.92376369664464 9.35746459744868 9.32380867339543 9.52524971325605 9.37872773449235 9.38516868761118 9.66432628117205 9.59812979365113 9.19828224941342 9.66781384521743 9.03734071295283 0.13808555742008 0.121716802480571 0.129395366430234 0.132589617896908 0.124073944499869 0.131898343620240 0.123482015249442 0.122464598017292 0.147364487782761 0.128004762995434 0.128164523014399 0.124910139627185 0.124391237374477 0.135522122915309 0.125901507215965 0.122584340273656 0.133353226081555 0.121716802480571 0.130258975324909 2 2 - 13479778 13480344 13480132.909 13479614 13480581 - gene protein_coding_gene FALSE TRUE AT2G31670.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G51360.1); similar to Hypothetical protein [Oryza sativa] (GB:AAK55783.1); contains InterPro domain Stress responsive alpha-beta barrel; (InterPro:IPR013097); contains InterPro domain Dimeric alpha-beta barrel; (InterPro:IPR011008) -0.0179531799965977 -0.206534098670092 0.84129292118368 1 0.793754772496919 18.6103657685324 -0.0179531799965977 0.079075519130713
AT1G05850_at 11.6801142978912 11.8302296132828 11.2839714934251 11.3815530296528 11.6884936292326 11.5405660873554 12.1749331563072 12.2275428115494 12.3091799968846 12.4443612782985 13.2243243902036 13.1083293045706 12.9258820610291 12.8232026333602 13.0636724348063 12.7757244034666 12.2900629474980 13.1378592513174 12.3982542604990 0.07089594284471 0.0696901709447472 0.0716334179186812 0.0732636521786215 0.0694563646964416 0.0766133384197477 0.0727680728939956 0.074777081731139 0.0838757109806716 0.0741995161330015 0.0710226894631925 0.0694563646964416 0.0703705116669723 0.072202060591649 0.0720856812831518 0.0694563646964416 0.0744730318791389 0.0733890153580909 0.0704890241382455 1 1|0 -|/ 1766939 1767428 1767164.4 1766502 1768694 - gene protein_coding_gene FALSE TRUE AT1G05850.1 POM1 (POM-POM1); chitinase Encodes an endo chitinase-like protein AtCTL1. Essential for tolerance to heat, salt and drought stresses. Also involved in root hair development, cell expansion and response to cytokinin. Allelic to erh2. 11 alleles described in Hauser (1995). Mutant is defective in acquired thermotolerance, appears semidwarf throughout its life cycle and has extra lateral branches. There are two EMS alleles. Expression of AtHSP101 is not affected in the mutants. similar to chitinase [Arabidopsis thaliana] (TAIR:AT3G16920.1); similar to class VII chitinase precursor [Gossypium hirsutum] (GB:AAP80800.1); contains InterPro domain Glycoside hydrolase, family 19; (InterPro:IPR000726) 0.0150707116064388 0.205332965935531 0.842201484322702 1 0.793496530171655 24.3772075265915 0.0150707116064388 0.0412099433787472
AT4G30720_at 5.68437214206425 6.09134800483169 5.32904759982162 5.49105313437459 6.85410565882589 5.75474508969822 6.01150830110698 5.99722331344981 4.66725176573665 5.40093243714508 5.06315306225815 5.5104098962057 5.23862648577483 5.03824656174232 5.65806608432411 5.12366023567704 5.22090493322467 4.60072447747101 5.40304565833904 0.204658614687584 0.209523865126053 0.217189454710913 0.205186682480714 0.208039785426993 0.213108648550103 0.213612658095638 0.210041358510998 0.223779981879863 0.213057538445307 0.204752929138391 0.204658614687584 0.206933840626416 0.211069869595403 0.207958491636467 0.204658614687584 0.222918240835713 0.206712361948739 0.208858583537578 4 4|0 -|/ 14972297 14973138 14972797.857 14971915 14975525 - gene protein_coding_gene FALSE TRUE AT4G30720.1 monooxygenase similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55089.1); similar to Os05g0411200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055536.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Adrenodoxin reductase; (InterPro:IPR000759); contains InterPro domain Monooxygenase, FAD-binding; (InterPro:IPR002938) -0.0321138615026484 -0.204938350980438 0.842500034253969 1 0.793412013576092 11.0710756992675 -0.0321138615026484 0.204810239797510
AT1G27385_at 8.05106741067117 8.30057301434784 8.30486077213385 8.18596938717203 8.67295112747833 8.12071971244668 8.85117882761351 8.51393046484342 8.0401960951404 8.2283962888805 8.32103210987378 8.05124073570565 8.18167130222046 8.10753994545403 8.75230767531279 8.57816167822181 8.27985994149089 8.32826937632583 8.24976051970196 0.165096017179285 0.164099089656604 0.173154226069923 0.164348508011167 0.167252541744827 0.174575107795532 0.171863613260352 0.174268367859954 0.180086466996924 0.168222483651674 0.168264476852339 0.165045300260734 0.167086727225661 0.176119609514507 0.169617009698222 0.17242938437475 0.180483854205304 0.172199682345521 0.171325470898775 1 1|0 -|/ 9511351 9512746 9512221.7 9510925 9512847 - gene protein_coding_gene FALSE TRUE AT1G27385.1|AT1G27385.2 similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52738.1); similar to Os02g0507400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046922.1); similar to OSIGBa0148P16.4 [Oryza sativa (indica cultivar-group)] (GB:CAH66570.1); contains InterPro domain Protein of unknown function DUF493; (InterPro:IPR007454) 0.0220819323867225 0.204679578681621 0.842695825650093 1 0.793356678391568 16.6240536629967 0.0220819323867225 0.121765103429487
AT3G24120_at 7.64323121506668 8.16976162096408 7.75418403940724 7.93412395162839 8.47815211976126 8.38877090797799 7.45804618078015 7.8451053726072 7.69071548703152 7.19268936067146 6.94931097463166 6.52281304065117 7.24644966552612 7.06654322598982 6.67786511161605 7.30390126246052 7.04904467608674 7.07463046478345 7.28498070979034 0.168951273089468 0.167521200336553 0.174336898986643 0.170428413146587 0.169274317699767 0.175775105253045 0.164753702414306 0.167620697383030 0.175140409337280 0.174212993337392 0.166040101119008 0.169111647317101 0.168295480002382 0.170623788463078 0.175856249164774 0.164753702414306 0.18161301269374 0.166973190247411 0.164753702414306 3 3|0 -|/ 8706013 8706830 8706276.6 8705643 8708322 - gene protein_coding_gene FALSE TRUE AT3G24120.1|AT3G24120.2 myb family transcription factor similar to UNE16 (unfertilized embryo sac 16), transcription factor [Arabidopsis thaliana] (TAIR:AT4G13640.1); similar to myb family transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26189.1); similar to Os02g0174000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046045.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005)|similar to UNE16 (unfertilized embryo sac 16) [Arabidopsis thaliana] (TAIR:AT4G13640.2); similar to myb family transcription factor-like [Oryza sativa (japonica cultivar-group)] (GB:BAD26189.1); similar to Os02g0174000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046045.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0216851962201938 -0.204498612400571 0.842832754590136 1 0.793318022145216 15.1468127536321 -0.0216851962201938 0.118313774231959
AT3G23200_at 4.08278501606987 4.74533454154127 5.02500848463266 5.02927211743496 4.75851882237717 4.43584961010243 4.77946931328274 5.5331748617279 4.77025479768885 4.27343881339418 4.58601035204651 4.20388270453415 4.93569729775297 4.9555165196705 3.26530159405363 4.73387061862634 4.67966337896665 4.83870656727605 4.43667012719665 0.297078824356679 0.281699961039232 0.293856706775722 0.287172988942454 0.283593551093002 0.301260977801699 0.298728249797099 0.292676263075225 0.304623174080576 0.284620714037971 0.281699961039232 0.283535019249598 0.281709819875177 0.281699961039232 0.290181559766896 0.289414388814649 0.312729167247035 0.283835930437663 0.283771742242022 3 3|0 +|/ 8282219 8282580 8282458.667 8281370 8282785 + gene protein_coding_gene FALSE TRUE AT3G23200.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G53850.1); similar to Os09g0249400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062672.1); similar to Protein of unknown function DUF588 [Medicago truncatula] (GB:ABE82916.1); similar to Os01g0847300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044796.1); contains InterPro domain Protein of unknown function DUF588; (InterPro:IPR006702) 0.0291739375853235 0.204127937090226 0.8431132453206 1 0.793238947738146 9.30781945016733 0.0291739375853235 0.182421084219212
AT1G76510_at 5.10750129657134 5.1078883027575 5.02401828439679 4.66478316351653 4.75610045159461 4.7597965965761 4.25890700559933 4.20328323129243 4.31370497416203 4.9492966306938 4.92590993584787 4.82818527572715 4.62164707465465 4.48739498279897 4.55557695642354 4.60873987832675 4.63457920137079 4.04405859661501 4.99425123031637 0.238577353329324 0.230116503869822 0.235468077145574 0.233385184865767 0.229164349318010 0.241315657477637 0.244192849870795 0.229164349318010 0.234099556639237 0.236063383260535 0.23120382114547 0.232372455858712 0.22965253586993 0.238823950407168 0.234296160636373 0.23004888404464 0.240878336799247 0.234322076743496 0.246428165147574 1 1|0 -|/ 28713826 28714899 28714081 28713609 28717846 - gene protein_coding_gene FALSE TRUE AT1G76510.1|AT1G76510.2 ARID/BRIGHT DNA-binding domain-containing protein similar to ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G20910.1); similar to AT-rich interaction re (GB:ABE82605.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978); contains InterPro domain AT-rich interaction region; (InterPro:IPR001606); contains InterPro domain Heat shock protein Hsp20; (InterPro:IPR002068) -0.0161882295188086 -0.201362189307939 0.845206835354899 1 0.792653425558651 9.4056243412604 -0.0161882295188086 0.062911425156399
AT1G72480_at 4.8278998085241 5.23387321505909 4.62067185171954 4.70018356057435 4.63076891639299 4.75258009846023 5.03785663330586 4.9984178508545 5.10317273509638 4.17932459167296 5.12244535075292 5.53749196388186 5.12189074419637 5.02713063355435 5.5587311681457 4.80874949904674 4.32440664079986 5.01309851420493 4.96736644218138 0.198474649612631 0.194433061585137 0.207484801242262 0.196633263119482 0.199961081434405 0.209373681140947 0.201537225395622 0.203917183823935 0.202961762289937 0.196967153781144 0.198014640027392 0.196613666010029 0.210643696772576 0.197585779819148 0.194433061585137 0.197826896496977 0.208743526890885 0.205220759911274 0.194739642688123 1 1|0 -|/ 27290057 27290766 27290423.3 27289720 27292030 - gene protein_coding_gene FALSE TRUE AT1G72480.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G01070.1); similar to Os11g0546100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001068063.1); similar to Os09g0439700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063277.1); similar to Lung seven transmembrane receptor family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95807.1); contains InterPro domain Lung seven transmembrane receptor; (InterPro:IPR009637) -0.0170861477382535 -0.200627087344800 0.845763505192717 1 0.792499130764504 9.75738031884787 -0.0170861477382535 0.0749408421796028
AT1G48440_at 10.9099171816664 11.1310827554249 10.8622013524499 11.0911793040806 10.6439249987697 10.7035878485365 10.7251752123095 11.1081755718413 10.5286204501539 10.4828939788817 10.6905158917341 10.5360917498815 10.7322776609562 10.6862070051141 10.6617272568501 10.4760267990149 10.2131835706925 10.5305155432840 10.3639756293908 0.108014008700594 0.105765917212066 0.106780689785747 0.10794051584256 0.106075977427809 0.112636609479466 0.11049453131827 0.107684758765515 0.111595525291240 0.108519053935580 0.108596353218965 0.106882328522932 0.107063716586252 0.113036802880142 0.110080591960307 0.104416984462591 0.118914263996258 0.115109077462468 0.109491805995065 1 1|0 +|/ 17910760 17911946 17911156.4 17910655 17912202 + gene protein_coding_gene FALSE TRUE AT1G48440.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G17780.1); similar to Os02g0734900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048043.1); similar to Os03g0240700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049510.1); similar to Erwinia induced protein 2 [Solanum tuberosum] (GB:AAO32066.1) -0.0180214029012942 -0.199420231704818 0.84667761755771 1 0.792247028245424 21.4090629635514 -0.0180214029012942 0.0868027503901935
AT3G52580_at 8.59659292578041 8.91087379560859 8.11626605886106 8.04243727295699 8.43410471560774 8.07101178867514 8.50909307694628 8.64076649575732 7.88705169315161 7.98239448232408 8.38451194245883 8.93298499280825 8.29787116674983 8.43550602182723 9.13282039830003 8.31718797516744 7.8340583206165 8.139313436499 8.04623521472612 0.161953501104460 0.150794435067844 0.167523326565713 0.165919340759093 0.157602311151083 0.173423984695974 0.152354736285355 0.152558359422333 0.166348860399714 0.157325114865146 0.150553907678634 0.157643085165381 0.150553907678634 0.165992152486229 0.160303977784717 0.156390224347995 0.175269470768651 0.161677311804747 0.157496185724274 3 3|0 +|/ 19514651 19515491 19515209.25 19514201 19515902 + gene protein_coding_gene FALSE TRUE AT3G52580.1 40S ribosomal protein S14 (RPS14C) Identical to 40S ribosomal protein S14-3 (RPS14C) [Arabidopsis Thaliana] (GB:P42036;GB:Q9SVD9); similar to 40S ribosomal protein S14 (RPS14B) [Arabidopsis thaliana] (TAIR:AT3G11510.1); similar to cytoplasmic ribosomal protein S14 [Brassica napus] (GB:AAO41731.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) -0.0179943147142316 -0.198807643541834 0.847141705942032 1 0.792119639629387 16.6182310555429 -0.0179943147142316 0.087113304035394
AT1G15820_at 13.6565415766717 13.7549171421391 13.5577119496543 13.6088491277288 13.7024126347443 13.5924020963559 13.9467104693189 14.0898667992523 14.3625238799252 14.3448364376734 14.6920453634102 14.7532003408729 14.5746596701427 14.5004438398189 14.4737277927342 14.5021286136032 14.2335435114557 14.4855589963421 14.2191425911167 0.0637733337935562 0.0618315163908781 0.0639437580967709 0.0659705756977646 0.0659365620033013 0.0648763688460103 0.0659657105943902 0.0618315163908781 0.0663111871557419 0.0665187254308449 0.0618800770332687 0.0640156664765184 0.0627960928958821 0.0662979539031673 0.0637003955570612 0.062149989314563 0.0656679323939461 0.0691762948908777 0.0625536956805938 1 0|1 /|- 5446714 5447197 5446947.6 5446457 5447854 - gene protein_coding_gene FALSE TRUE AT1G15820.1 LHCB6 (LIGHT HARVESTING COMPLEX PSII); chlorophyll binding Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II. similar to LHCA6 (Photosystem I light harvesting complex gene 6), chlorophyll binding [Arabidopsis thaliana] (TAIR:AT1G19150.1); similar to Lhcb6 protein [Brassica rapa subsp. pekinensis] (GB:AAT74560.1); contains InterPro domain Chlorophyll A-B binding protein; (InterPro:IPR001344) -0.014292915791136 -0.197855722382885 0.847862993206709 1 0.791922456195417 28.1565503839594 -0.014292915791136 0.0366650586715859
AT3G04880_at 6.51451294251547 6.94614072521307 6.18321777338328 6.39454263066682 6.55858444485794 6.3759740811465 6.20344947716926 5.9244497460604 5.85769901060545 5.79842086838064 5.90084578032067 5.97910576149167 5.79347186615107 5.99077250313564 6.10912712600512 6.04071088569438 5.89425644093858 6.03821790133273 6.07646253402245 0.178305757666804 0.173413364851242 0.178727181777970 0.176598807102488 0.177639412667834 0.172264506924435 0.179119988851551 0.180864516859077 0.189279736303078 0.177736694238927 0.178309420129996 0.177783091223538 0.172859927819205 0.187852297175156 0.179967852330573 0.174630621557110 0.187680447251626 0.175079482803407 0.173565076832281 3 3 - 1346580 1347010 1346829.545 1346279 1347383 - gene protein_coding_gene FALSE TRUE AT3G04880.1 DRT102 (DNA-DAMAGE-REPAIR/TOLERATION 2) encodes a novel protein involved in DNA repair from UV damage. Isolated by functional complementation of E. coli UV-sensitive mutants (UVR genes). Identical to DNA-damage-repair/toleration protein DRT102 (DRT102) [Arabidopsis Thaliana] (GB:Q05212); similar to putative DNA-damage-repair/toleration protein DRT102 [Trifolium pratense] (GB:BAE71305.1); contains InterPro domain DNA-damage-repair/toleration protein, DRT102; (InterPro:IPR012100); contains InterPro domain Ribose/galactose isomerase; (InterPro:IPR003500); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin 2, conserved barrel; (InterPro:IPR013096); contains InterPro domain Cupin region; (InterPro:IPR007113) 0.0191971192858182 0.197394582322286 0.848212461528503 1 0.791827271368849 12.3271961463615 0.0191971192858182 0.101225608294640
AT2G45620_at 8.57282404789225 8.76541387455786 8.48407896183638 8.37943610459311 8.74631929453364 8.6826778256134 8.14166618682108 8.37813754150045 8.8143664164136 8.30471559132949 8.41147427152235 8.4209900010089 8.78614566822773 8.50384336406398 8.03637240356738 8.65429962595507 8.53361513563308 8.54939105779776 8.57557704601256 0.154410669443546 0.154945013605146 0.154274766112195 0.150748302463229 0.154317135097052 0.162146341539325 0.144848114974763 0.148434210105317 0.160138860545659 0.148416622853159 0.144571057979774 0.146803299181233 0.142935665355155 0.154200876238753 0.160263992198468 0.146979311926563 0.155544178745762 0.153899486778113 0.152566118002455 2 0|2 /|+ 18802173 18802755 18802464.222 18799938 18802978 + gene protein_coding_gene FALSE TRUE AT2G45620.1 nucleotidyltransferase family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G45750.1); similar to PAP/25A associated domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG65960.1); similar to Os10g0188300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064267.1); contains InterPro domain PAP/25A-associated; (InterPro:IPR002058); contains InterPro domain PAP/25A core; (InterPro:IPR001201); contains InterPro domain DNA polymerase, beta-like region; (InterPro:IPR002934) 0.0153738618356847 0.196540631902968 0.84885970900674 1 0.791651586524983 17.0447706257805 0.0153738618356847 0.0568741742421613
AT3G28590_at 6.25586085854388 5.82616023740718 6.0394928680272 5.86537813821185 5.61348891555715 6.24309627984764 5.954456356906 5.87973712946216 6.63783748976395 6.92130125439848 6.77057832161269 6.70992637824539 6.65535440423488 6.97174433069994 6.8173602829108 6.58945739598934 6.55789361297584 6.71029274692512 6.62887579651486 0.205676902958953 0.203268237530205 0.20433701349826 0.209143411337499 0.210797253737749 0.204455602964402 0.202054043510224 0.208483554840423 0.199826224274814 0.198780980042492 0.204554595425145 0.200986883178349 0.198780980042492 0.200158437643877 0.203447405762523 0.201933692886790 0.203412776706316 0.205683576969470 0.201641251771001 3 0|3 /|+ 10719716 10719888 10719796.444 10719557 10719919 + gene protein_coding_gene FALSE TRUE AT3G28590.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G79170.1) -0.0226009205976760 -0.195407930595195 0.849718420975415 1 0.791419717546701 12.6857909052079 -0.0226009205976760 0.135927466384682
AT2G31750_at 6.95152782404539 7.10011399237558 7.65488031790378 7.6344180003252 8.13386588243996 7.81526497201787 9.04962979335294 8.83188708120792 7.8488167078003 7.96156906971154 8.1540887640537 7.66427973284902 8.41685747018894 8.3299924745572 7.41094494468677 8.58445456726219 8.20046374696825 8.01044314668854 8.05612935968957 0.157303597368285 0.144031093233278 0.144031093233278 0.150232518211807 0.144865295610476 0.152660673645664 0.164183515369142 0.155245873939043 0.149570036508723 0.147146554624313 0.151999609874394 0.145386361982605 0.146193587048963 0.156791590239309 0.150530179394379 0.147409577377292 0.163096441999771 0.154958896049945 0.144941624640992 2 2 + 13506351 13506691 13506512.091 13504310 13507100 + gene protein_coding_gene FALSE TRUE AT2G31750.1 UGT74D1 (UDP-glucosyl transferase 74D1); UDP-glycosyltransferase/ abscisic acid glucosyltransferase/ transferase, transferring glycosyl groups / transferase, transferring hexosyl groups similar to UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis thaliana] (TAIR:AT1G05680.1); similar to UDP-glucose:salicylic acid glucosyltransferase [Nicotiana tabacum] (GB:AAF61647.1); contains InterPro domain UDP-glucuronosyl/UDP-glucosyltransferase; (InterPro:IPR002213) -0.0163734097003636 -0.195378623938230 0.84974064145478 1 0.791413735958447 15.9224213087789 -0.0163734097003636 0.0716485985656996
AT1G01860_at 5.28440271210885 5.26083263673482 4.79300785531845 4.54750100359114 5.8755739891718 5.38384756280899 5.64222612726889 5.70795969865268 4.73759265536961 4.99059777234283 4.77253215335458 5.05905456573361 5.18944055399699 5.13651731656816 5.26528831899372 5.4435385644289 5.22220080821657 4.69074585212681 4.70334715610655 0.222657609107397 0.214822661118512 0.227226549639299 0.222334440737774 0.219073729383499 0.224479620216919 0.21989456889403 0.215561421896954 0.226200769612476 0.214971547783603 0.215503563383199 0.223220613069556 0.227215565645200 0.21946319961463 0.217240186237344 0.214822661118512 0.226139202064131 0.221229851779407 0.224355154222660 1 1|0 -|/ 304882 305817 305372.444 304133 306287 - gene protein_coding_gene FALSE TRUE AT1G01860.1 PFC1 (PALEFACE 1) dimethyladenosine transferase similar to ribosomal RNA adenine dimethylase family protein [Arabidopsis thaliana] (TAIR:AT5G66360.2); similar to Ribosomal RNA adenine dimethylase (ISS) [Ostreococcus tauri] (GB:CAL55247.1); contains InterPro domain Ribosomal RNA adenine methylase transferase; (InterPro:IPR001737); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain RRNA 16S rRNA dimethylase; (InterPro:IPR011530) -0.0184852261154791 -0.195329698675215 0.849777737192233 1 0.791403752125898 10.2658825955155 -0.0184852261154791 0.09587680422736
AT4G20930_at 5.38078162782391 5.34943034727691 5.25704852538121 5.66045239080013 6.21648154270274 5.47229374977268 6.14444238191969 5.46387580679205 4.4376725999339 4.98364773016515 4.33903610620992 4.12065488214954 4.3163685321048 4.32949511677276 4.33867239231039 4.93396148143319 5.19692452391133 4.8016865378497 4.59041231263577 0.209083864524822 0.211372515719927 0.206824551339474 0.208780684526402 0.215672516816497 0.212230239842384 0.211560307586100 0.205671283104347 0.215265792177031 0.208549885322659 0.210945979314308 0.204954853852047 0.202986812007677 0.204001173285418 0.216209484118580 0.201402749166307 0.211218597689699 0.207771686186294 0.204040819649087 4 4|0 -|/ 11199140 11199811 11199546.222 11198400 11201098 - gene protein_coding_gene FALSE TRUE AT4G20930.1 3-hydroxyisobutyrate dehydrogenase, putative Identical to Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor (EC 1.1.1.31) (HIBADH) [Arabidopsis Thaliana] (GB:Q9SUC0;GB:Q8LC25); similar to phosphogluconate dehydrogenase (decarboxylating) [Arabidopsis thaliana] (TAIR:AT1G17650.1); similar to putative 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD45522.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 3-hydroxyisobutyrate dehydrogenase; (InterPro:IPR011548); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204) -0.0282705448872591 -0.193173657286932 0.8514128651799 1 0.790966243369714 10.2269395436441 -0.0282705448872591 0.188041544550683
AT2G38750_at 6.16854988843961 6.3345759559677 5.53227503088233 5.30467420897966 6.06397319819042 5.66668286230888 7.50408506203712 7.26358319903196 4.26717165887440 5.5454866431448 5.76659307013855 7.17154633332040 6.55045406753808 5.68285738303717 6.10750054288402 6.30927965039494 5.81633593682056 6.27598068351636 5.39833695332125 0.211885419186625 0.210952975930404 0.209963133297488 0.210724294275014 0.205166413957114 0.209459860584358 0.208282990061112 0.216108081364903 0.241388355508152 0.207761295168216 0.215705112231807 0.207082219269520 0.206438690771235 0.213100240626253 0.210648687714015 0.202134246121414 0.209695535225115 0.207893566555593 0.211600680557777 2 2|0 -|/ 16203675 16204490 16204227.125 16203343 16205569 - gene protein_coding_gene FALSE TRUE AT2G38750.1 ANNAT4 (ANNEXIN 4, ANNEXIN ARABIDOPSIS 4); calcium ion binding / calcium-dependent phospholipid binding Annexins are a family of calcium dependent membrane binding proteins though to be involved in Golgi mediated secretion. This is one of four annexins identified in Arabidopsis. similar to annexin, putative [Arabidopsis thaliana] (TAIR:AT5G12380.1); similar to Annexin, putative [Medicago truncatula] (GB:ABE90762.1); contains InterPro domain Annexin; (InterPro:IPR001464) -0.0180302473013304 -0.192352932408882 0.852035497536706 1 0.79080096410601 11.8700000308479 -0.0180302473013304 0.0940003155845698
AT1G61790_at 10.2378036643935 10.6995478523029 10.4056201724741 10.5420976993821 10.4597807121677 10.0571913665659 10.2104716476728 10.3219706451355 10.1609579831193 9.84759669820134 10.2142885553357 10.3552333398005 9.95609442406817 10.1421894795723 9.9066569929853 9.97947217200059 9.42204730083612 10.0771647349914 9.89012293161365 0.114344202307602 0.109585515127499 0.117923182043766 0.114543745308956 0.11150533636035 0.109585515127499 0.113056719402955 0.110721979650016 0.114789655914756 0.114517792242248 0.109839898099592 0.109585515127499 0.113029659344497 0.113972094357873 0.115983360499944 0.110946445014098 0.126922640187080 0.122587279234051 0.117465958567421 1 1 + 22818590 22819059 22818770.545 22818055 22819095 + gene protein_coding_gene FALSE TRUE AT1G61790.1 OST3/OST6 family protein similar to OST3/OST6 family protein [Arabidopsis thaliana] (TAIR:AT1G11560.1); similar to unknown [Brassica rapa] (GB:ABB97041.1); contains InterPro domain OST3/OST6; (InterPro:IPR006844) 0.0195707696209799 0.192150994858342 0.852188711664691 1 0.790760404374305 20.3532450929752 0.0195707696209799 0.110313901165934
AT2G30070_at 4.98075295279468 5.32250138843065 4.81784623521385 4.68975634915599 4.69505070181586 4.78815202711858 5.1075050340496 5.05108267303183 6.19408548655121 6.14019007630621 6.869884509042 6.60642603516413 5.89684532234264 6.70032274821604 6.62736988147340 7.11463840240823 5.91772496065115 6.99080953802606 6.42759081069428 0.235436617781691 0.230027760768459 0.239625628811703 0.235043587693354 0.234464891725407 0.247814661938681 0.239989414114209 0.244972331601793 0.251207749668574 0.244831298048635 0.240159471298716 0.234470750274004 0.230027760768459 0.246578181002039 0.253393214450696 0.239035322000275 0.255117063062485 0.234015734561159 0.244958395606667 2 2 + 12844946 12845486 12845162.182 12842070 12845703 + gene protein_coding_gene FALSE TRUE AT2G30070.1 ATKT1 (Arabidopsis thaliana K+ uptake 1); potassium ion transporter Encodes a high affinity potassium transporter. Identical to Potassium transporter 1 (AtPOT1) (AtKUP1) (AtKT1) (POT1) [Arabidopsis Thaliana] (GB:O22397;GB:O50043); similar to KUP3 (K+ uptake permease 3), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT3G02050.1); similar to potassium transporter, putative [Arabidopsis thaliana] (TAIR:AT5G14880.1); similar to KUP6 (K+ uptake permease 6), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G70300.1); similar to putative high-affinity potassium transporter protein 1 [Nicotiana tabacum] (GB:ABI14646.1); similar to putative high-affinity potassium transporter 1 [Nicotiana rustica] (GB:ABF85693.1); similar to putative potassium transporter [Cymodocea nodosa] (GB:CAD20318.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) -0.0156059834678643 -0.191415928310729 0.852746477499664 1 0.790613120618688 11.3538099864594 -0.0156059834678643 0.0659086932593534
AT3G30180_at 7.08030121305206 7.4355724132084 5.96280863808792 5.94778420233515 7.80233852649759 7.31310155911663 6.16083058966494 6.65310011298011 9.44524970126082 8.55029218315782 9.84576470238856 9.28807393084525 8.98093522816557 9.3655507468245 9.07636854518536 8.5552167779007 7.24637100885668 8.89966946398981 8.63024495421283 0.160501898364515 0.158411349852801 0.187116951630684 0.170718471211825 0.158665107938807 0.166777847156586 0.164335375894875 0.162316538345224 0.170483417313593 0.16107547803024 0.163152485385314 0.158831116301880 0.153585983852035 0.161022094095096 0.152658012760673 0.160207805253619 0.172806639769271 0.160037421189957 0.160645749673374 3 3 + 11814756 11815959 11815239.818 11813216 11816244 + gene protein_coding_gene FALSE TRUE AT3G30180.1 BR6OX2/CYP85A2 (BRASSINOSTEROID-6-OXIDASE 2); monooxygenase/ oxygen binding Encodes a cytochrome p450 enzyme that catalyzes the last reaction in the production of brassinolide. It is capable of converting 6-deoxocastasterone into castasterone, a C-6 oxidation, as well as the further conversion of castasterone into brassinolide by a Baeyer-Villinger oxidation reaction at C-6, resulting in the formation of an unusual seven-membered lactone ring. The enzyme possesses high affinity for both C28- and C27-Brassinosteroids. The expression of the gene using a CYP85A2 promoter:LUC fusion construct was shown to be under circadian and light control. Identical to Cytochrome P450 85A2 (EC 1.14.-.-) (Brassinosteroid-6-oxidase 2) (BR6ox 2) (C6-oxidase 2) (CYP85A2) [Arabidopsis Thaliana] (GB:Q940V4;GB:Q8LFX3;GB:Q9LH81); similar to BR6OX1 (BRASSINOSTEROID-6-OXIDASE), oxygen binding [Arabidopsis thaliana] (TAIR:AT5G38970.1); similar to cytochrome P450 [Phaseolus vulgaris] (GB:AAR13307.1); similar to brassinosteroid-6-oxidase [Vitis vinifera] (GB:ABB60086.1); similar to Cytochrome P450 85A (C6-oxidase) (GB:Q69F95); contains InterPro domain E-class P450, group I; (InterPro:IPR002401); contains InterPro domain Cytochrome P450; (InterPro:IPR001128) -0.0219806648706620 -0.190945234749583 0.85310368401686 1 0.790519102467965 15.6857326968995 -0.0219806648706620 0.134952178175577
AT1G78810_at 4.8629902864738 5.00128785369292 5.15339538979792 5.16969286023897 4.87036190030427 5.02020734080945 5.68255577239001 5.19435498849198 4.37491434621394 4.70068561386057 4.72646802026181 5.08306357983986 4.79182489580996 4.77964928787265 4.7741392608703 4.49434822192711 4.7797190811209 4.7011486346691 4.93360492365046 0.256691723059509 0.242592654264058 0.242215211914237 0.23886744047511 0.241279345609128 0.242848414730500 0.239267806240134 0.246747033842052 0.251707463945846 0.244461116209366 0.243629125136906 0.247180652431231 0.241724314164091 0.239833744759057 0.243233959667729 0.241066906952253 0.239647866090317 0.242259379243072 0.238917615906891 1 1 - 29633581 29634102 29633818.1 29633162 29635446 - gene protein_coding_gene FALSE TRUE AT1G78810.1|AT1G78810.2 similar to Os06g0153600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056841.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD69284.1) -0.0176613454598584 -0.190732067901504 0.853265466831921 1 0.790476599151609 9.83737084104397 -0.0176613454598584 0.0916022466337144
AT4G32590_at 9.17814831676649 9.01269372664966 9.00958956874617 9.07030295849691 9.5487249920697 8.92305263649864 9.94298492616482 9.50206360276307 9.49428907907195 9.44107306658813 9.79382558470167 9.94383883239773 9.6133824758527 9.8824945075311 9.9952804133659 10.0452516636933 9.41871052342646 9.5767988219203 9.47056247514245 0.124764986552804 0.124065868632751 0.126821325882390 0.128793703346058 0.122322633702721 0.132763824629099 0.123003236421769 0.126539881401548 0.122729982457692 0.133432909590590 0.123762944667419 0.122322633702721 0.122322633702721 0.127302794509699 0.128048323700416 0.123932251297884 0.139446913508374 0.127633580269704 0.127565585302051 4 4|0 +|/ 15721426 15722551 15721658.25 15721330 15722914 + gene protein_coding_gene FALSE TRUE AT4G32590.1|AT4G32590.2|AT4G32590.3|AT4G32590.4 ferredoxin-related|electron carrier similar to ferredoxin-related [Arabidopsis thaliana] (TAIR:AT3G16250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58739.1); similar to Os05g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056273.1); contains InterPro domain 2Fe-2S Ferredoxin-like fold; (InterPro:IPR012675); contains InterPro domain Ferredoxin; (InterPro:IPR001041)|similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58739.1); similar to Os05g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056273.1); contains InterPro domain Ferredoxin; (InterPro:IPR001041)|similar to ferredoxin-related [Arabidopsis thaliana] (TAIR:AT3G16250.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT58739.1); similar to Os05g0555300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056273.1); contains InterPro domain Ferredoxin; (InterPro:IPR001041) 0.0220006042302421 0.190218407990876 0.853655338719339 1 0.790374373805974 18.8996147875838 0.0220006042302421 0.135926572750296
AT1G65410_at 8.18282444798342 8.20042313222329 8.25530384482604 8.1009443445004 8.48859702703048 8.19820385782891 8.35115144335165 8.22444392221381 8.07540092590044 7.7191297826249 7.843125253319 7.68885710419584 7.62571588122857 7.82481332433446 8.01118515629543 8.11911723071438 7.55602918629733 7.62452218564226 7.5376925390408 0.191434730703155 0.190607066623771 0.184469177132129 0.184663049281639 0.192994025331118 0.188885946286075 0.188838867087211 0.189490578520523 0.208594915301310 0.186526909028267 0.182244496850877 0.184645097120565 0.187458686350370 0.183868033569546 0.180387167590222 0.184500833631890 0.183872416172967 0.201234617293065 0.186751191846423 1 0|1 /|+ 24299925 24300966 24300486.625 24298836 24301258 + gene protein_coding_gene FALSE TRUE AT1G65410.1 ATNAP11 (Arabidopsis thaliana non-intrinsic ABC protein 11) member of NAP subfamily Identical to Non-intrinsic ABC protein 11, chloroplast precursor (NAP11) [Arabidopsis Thaliana] (GB:Q9AT00;GB:O80812;GB:Q84JX9); similar to ATNAP3 (Arabidopsis thaliana non-intrinsic ABC protein 3) [Arabidopsis thaliana] (TAIR:AT1G67940.1); similar to Os03g0670100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050868.1); similar to putative ABC transporter, 5'-partial [Oryza sativa (japonica cultivar-group)] (GB:AAP44649.1); similar to ABC transporter family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF98112.1); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain ABC transporter related; (InterPro:IPR003439) 0.0151572240840567 0.190146995242093 0.853709544917335 1 0.790360183320703 16.0322757097158 0.0151572240840567 0.0610663682902404
AT4G33630_at 8.70247527677862 8.80792380067566 8.72812563357215 8.86404043979245 8.9036626956056 8.93346766801584 9.14338348468442 9.17390293620026 8.77650102992624 8.82267357951925 8.91960182802172 8.8246416299698 8.85751464733683 9.13231059222868 8.62113504755828 9.0660061099221 8.90168436603818 9.01153730260432 8.77158410464452 0.106908014722133 0.103593934372751 0.110973381762184 0.105131131629885 0.104637500101047 0.114027645747884 0.107683766485541 0.105485771352852 0.112931998332228 0.105489868358627 0.106754870705843 0.103681897493896 0.103339228363039 0.104226912690262 0.106742215808667 0.105385910998801 0.10911129476905 0.102457312111417 0.10559442698678 4 4 + 16157811 16159071 16158437.818 16155506 16159581 + gene protein_coding_gene FALSE TRUE AT4G33630.1|AT4G33630.2 EX1 (EXECUTER1) Identical to EXECUTER1 protein, chloroplast precursor (EX1) [Arabidopsis Thaliana] (GB:Q93YW0;GB:O81880); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G27510.1); similar to unknown protein [Oryza sativa] (GB:AAL59023.1) 0.0134768852125458 0.190093100918944 0.85375045421131 1 0.790349477431969 17.7606511644940 0.0134768852125458 0.0306712231526271
AT4G38510_at 9.00271686665662 9.14677332538861 9.19577501611906 9.06628840363871 8.98483892368657 8.65838628681348 9.80021678169716 9.7792990865333 9.40054638568214 9.45476278265368 10.0789173992909 10.0338062289526 9.87379790352577 9.97448982754355 10.0668751906158 9.75244597862946 9.6328566656591 9.68765868729167 9.34741592176114 0.103602475581923 0.09991163273934 0.101893961992910 0.099916974122315 0.104523635525062 0.113924403740297 0.100538193929937 0.102279561372433 0.110988790116867 0.108158210002806 0.104567255921569 0.100998019903511 0.100009844870127 0.101169965693447 0.101038076726792 0.0992656971216936 0.104660096453441 0.103364532304227 0.111457428231341 4 4|0 -|/ 18011152 18012840 18011883.875 18010806 18015167 - gene protein_coding_gene FALSE TRUE AT4G38510.1|AT4G38510.2|AT4G38510.3|AT4G38510.4 (VACUOLAR ATP SYNTHASE SUBUNIT B2); hydrogen ion transporting ATP synthase, rotational mechanism similar to (VACUOLAR ATP SYNTHASE SUBUNIT B3), ATP binding / hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism / hydrogen-exporting ATPase, phosphorylative mechanism [Arabidopsis thaliana] (TAIR:AT1G20260.2); similar to (VACUOLAR ATP SYNTHASE SUBUNIT B1), hydrogen ion transporting ATP synthase, rotational mechanism [Arabidopsis thaliana] (TAIR:AT1G76030.1); similar to Vacuolar ATP synthase subunit B isoform 2 (V-ATPase B subunit 2) (Vacuolar proton pump B subunit 2) (GB:Q40079); similar to vacuolar ATPase subunit B [Mesembryanthemum crystallinum] (GB:CAD27443.1); similar to vacuolar H+-ATPase subunit B [Zostera marina] (GB:BAF38479.1); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; (InterPro:IPR004100); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding; (InterPro:IPR000194); contains InterPro domain ATPase, V1 complex, subunit B; (InterPro:IPR005723); contains InterPro domain ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; (InterPro:IPR000793) 0.0153841321592387 0.188800649036103 0.854731648787423 1 0.790093637948567 18.8485440105938 0.0153841321592387 0.0657898936794074
AT4G19515_at 7.72325874571403 7.82582546443011 8.48950035869825 8.62590490444692 8.16052506958937 8.06245017614156 7.65756660394863 7.38007400119934 7.85070003028452 7.60841664743811 7.16442655689134 6.23910903511106 6.9184479367616 7.37987998530943 6.14987321700589 6.8992605996972 7.21064637802575 7.4173464015333 7.4610548060507 0.201470071676224 0.205773210504677 0.223078647719753 0.198766203903 0.222712088970583 0.216441202707749 0.211776116172613 0.198766203903 0.216553187466164 0.198766203903 0.198766203903 0.220464758722038 0.215551787871537 0.198766203903 0.211815076735709 0.200119126483730 0.216615364726548 0.20446537875444 0.198766203903 4 4 - 10640390 10640800 10640663.5 10640168 10642205 - gene protein_coding_gene FALSE TRUE AT4G19515.1 disease resistance family protein similar to TTR1 (WRKY domain family protein 16), transcription factor [Arabidopsis thaliana] (TAIR:AT5G45050.2); similar to disease resistance-like protein [Brassica rapa] (GB:AAV74409.1); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157) -0.0148847370349132 -0.18859463149729 0.854888076442808 1 0.790053016825899 15.2718536280459 -0.0148847370349132 0.0588759742872385
ATCG01040_at 12.3983656420503 12.8554647802526 12.3514111149446 12.4831148394420 11.9619039178445 12.0589707872096 12.3037510521277 12.6856218647856 13.3913544831754 13.3406523884331 13.9476999722852 13.9234341369032 13.5256167381862 13.6758383819302 13.7663352231868 13.6793291485672 13.1018134922577 13.2849258709527 13.1786453734306 0.0686544870374704 0.0713662465280957 0.0711094014442013 0.0693146564235286 0.0726432571213777 0.0714738430799404 0.074409193644071 0.0711020092490435 0.073776167471522 0.0708000165794892 0.0686481886802363 0.0698374314213268 0.0686481886802363 0.0704037587839188 0.0694755054775737 0.0686503950480653 0.077407030660733 0.0686481886802363 0.0686481886802363 C C + 114857 115377 115100.727 114461 115447 + gene protein_coding_gene FALSE TRUE ATCG01040.1 Identical to Cytochrome c biogenesis protein ccsA (ccsA) [Arabidopsis Thaliana] (GB:P56770); similar to cytochrome c heme attachment protein [Gossypium hirsutum] (GB:YP_538991.1); contains InterPro domain Cytochrome c assembly protein; (InterPro:IPR002541) -0.0186886488782809 -0.186702094924498 0.856325382017919 1 0.7896819160427 25.8456629342721 -0.0186886488782809 0.106892993863192
AT2G27490_at 5.90499457995367 6.04759580845607 6.24076138398906 6.3185289636044 6.53164999398016 6.22125983997645 5.88887822709173 5.90351334003527 6.10640778344319 6.08875885384118 5.99154644682718 5.64346306887155 5.5207976360487 6.04097426695639 5.18791019842201 6.0274905987373 5.09413015571092 5.6721360776992 6.01112158816484 0.214245360883068 0.212414690430515 0.214237397025118 0.205739247411202 0.214526747786103 0.206965374314516 0.209357466402027 0.202339049288808 0.211747236527027 0.201440941166529 0.205080206085140 0.200117484893299 0.200117484893299 0.220513889984209 0.206427315034429 0.202321472286580 0.205955562548963 0.218815017461154 0.20900741459932 2 2 - 11755204 11755751 11755458.364 11755093 11757260 - gene protein_coding_gene FALSE TRUE AT2G27490.1|AT2G27490.2 ATCOAE; ATP binding / dephospho-CoA kinase AT2G27490 encodes dephospho-CoA kinase. The molecular function was shown to phosphorylate the ribosyl moiety forming CoA. similar to Uridine kinase; Dephospho-CoA kinase [Medicago truncatula] (GB:ABE88557.1); contains InterPro domain Dephospho-CoA kinase; (InterPro:IPR001977) -0.0148260645769576 -0.186323372999316 0.85661307427135 1 0.789608099273217 11.9901821661236 -0.0148260645769576 0.0606776000763504
AT1G09560_at 8.42904187763857 9.00696440115979 8.41441630621171 8.82099421691459 6.88744797461339 7.57788858385192 6.68987566965875 7.88950753549234 7.77658123226747 7.03943025323195 7.2558312323606 7.38947937619014 7.59722985097626 7.99371794344612 6.8802802937065 7.61128045332923 6.95662409815607 7.42378768485644 6.8936651372713 0.188796173723102 0.19489384914378 0.195456692007801 0.183931546007814 0.185638993701915 0.195583743347629 0.191936404758786 0.185371372749007 0.200224898282745 0.189621934992750 0.185958331624013 0.185363994582553 0.182968862612452 0.182150933528532 0.190623108420717 0.182150933528532 0.183399258297551 0.201758258451635 0.190559483461825 1 1 + 3093961 3094525 3094306.727 3093841 3094864 + gene protein_coding_gene FALSE TRUE AT1G09560.1 GLP5 (GERMIN-LIKE PROTEIN 5); manganese ion binding / metal ion binding / nutrient reservoir germin-like protein (GLP5) Identical to Germin-like protein subfamily 2 member 1 precursor (GLP4) [Arabidopsis Thaliana] (GB:P94014;GB:O80538;GB:P94097); similar to GLP10 (GERMIN-LIKE PROTEIN 10), manganese ion binding / metal ion binding / nutrient reservoir [Arabidopsis thaliana] (TAIR:AT3G62020.1); similar to germin-like protein 2 [Vitis vinifera] (GB:ABH09468.1); contains InterPro domain Cupin 1; (InterPro:IPR006045); contains InterPro domain Cupin, RmlC-type; (InterPro:IPR011051); contains InterPro domain Cupin region; (InterPro:IPR007113); contains InterPro domain Germin; (InterPro:IPR001929) 0.0366546958906522 0.185553032017560 0.85719832572135 1 0.789458410431286 15.2770609411349 0.0366546958906522 0.268938578336341
AT1G10050_at 5.54678356135637 5.62612296649809 5.38785732778141 5.96270018115883 5.15791084948067 4.72047043969941 4.23599689344522 4.10293799603809 4.95896478024229 4.38627011355188 4.20592362389307 4.29502993237188 4.24601549764912 4.34553708229315 3.87514022371954 4.27227783559815 4.49567906583956 4.73062740532942 4.74376554847669 0.216435568193865 0.231796464070590 0.220639150979972 0.214546111006168 0.223475183687535 0.224717671873119 0.210492413114778 0.212798969373008 0.215670511649985 0.217068247392493 0.212175644624549 0.213232669637430 0.20864201111753 0.220955898547023 0.219948072796340 0.209206030182089 0.225561534409811 0.225302663654676 0.212468751304391 1 1 + 3282853 3283410 3283052.273 3279272 3283484 + gene protein_coding_gene FALSE TRUE AT1G10050.1 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein Encodes a putative glycosyl hydrolase family 10 protein (xylanase). similar to RXF12, hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT1G58370.1); similar to glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G08160.1); similar to putative xylanase Xyn2 [Nicotiana tabacum] (GB:AAZ79233.1); similar to putative endo-1,4-beta-xylanase [Populus tremula x Populus tremuloides] (GB:AAX33301.1); similar to putative xylanase Xyn1 [Nicotiana tabacum] (GB:AAZ79232.1); contains InterPro domain Carbohydrate-binding, CenC-like; (InterPro:IPR003305); contains InterPro domain Glycoside hydrolase, family 10; (InterPro:IPR001000); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.0206098488877111 0.185362102237014 0.857343395309931 1 0.789421404971766 9.5949036839791 0.0206098488877111 0.127849551884211
AT1G01240_at 9.31297068465066 9.47691286400596 9.60384703355535 9.4954849742121 10.1642277191045 9.79473637239887 9.44256262697474 9.32421938487914 9.84245178308036 9.39327931615798 9.5933059569763 9.10735058726682 9.27886821118373 9.35055183179955 8.93975584726423 9.24378887544338 8.86880610150387 9.41874469979139 9.4711739821651 0.103198169375322 0.107939511940919 0.0997165303706627 0.110689304512596 0.113844830330107 0.117392274679271 0.103531349753616 0.0997165303706627 0.109232170515773 0.106305761251589 0.102707590900481 0.0997165303706627 0.104309558253466 0.106197946633590 0.101799077189686 0.102024327519335 0.119396130891944 0.110953814834765 0.102702148878501 1 1 + 101104 101649 101420.364 99894 101834 + gene protein_coding_gene FALSE TRUE AT1G01240.1|AT1G01240.2|AT1G01240.3 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G46550.1); similar to Os09g0363500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062992.1); similar to Os08g0400300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001061754.1); similar to hypothetical protein MtrDRAFT_AC145165g14v1 [Medicago truncatula] (GB:ABE91800.1) 0.0157928940629579 0.185147199075058 0.857506686861707 1 0.789379798239382 18.9739276446584 0.0157928940629579 0.0752635309617014
AT1G21570_at 8.99664543002434 9.12342373060927 9.50733248970437 9.27036837555734 9.65395997603997 9.1122439492721 9.06936808186444 8.81588665441192 9.7135547274103 9.74295092715067 9.27855793622045 9.46668750862747 9.44634283031125 9.26546988847512 8.9764273187044 9.9046202431994 9.48050464964795 9.47648617049853 9.81833273291753 0.153412747935293 0.134770751037682 0.145987286533257 0.146684305565397 0.139718302865470 0.143755055656096 0.134770751037682 0.135315075119554 0.140362362778802 0.134770751037682 0.147275527910147 0.135580507850473 0.140726125562810 0.146748695852756 0.141696235625268 0.136653606784562 0.150907016984275 0.139020353845338 0.134770751037682 1 1 - 7557258 7557865 7557523.7 7557251 7560272 - gene protein_coding_gene FALSE TRUE AT1G21570.1 zinc finger (CCCH-type) family protein similar to ATCPSF30/CPSF30 [Arabidopsis thaliana] (TAIR:AT1G30460.2); similar to Os06g0638000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058149.1); similar to hypothetical protein LOC430349 [Gallus gallus] (GB:NP_001026756.1); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571) 0.0191264145668435 0.184815110375767 0.85775903465563 1 0.789315597680866 18.7787368512872 0.0191264145668435 0.113470798499504
AT2G20360_at 9.54106141617115 9.95715081372732 9.7426569717470 9.81129693613603 9.8953538872608 9.72527197856388 9.90254013674422 10.0961198480978 9.5998512817841 9.5664891187329 9.69175795162599 9.73705390845365 9.56338005651842 9.68840428708276 9.77236826493175 9.62523413355193 9.34504465016339 9.77968720428919 9.44384638742516 0.100377946763937 0.0960995151267105 0.100005091170116 0.09886282558796 0.0960995151267105 0.102218499678053 0.101590607733715 0.0967484447912395 0.107605521457220 0.0972106508462139 0.0970282207007308 0.097648429065231 0.0992102865842188 0.100443720237230 0.0979666749039504 0.0973460206053005 0.106320617028013 0.0992173789714576 0.0960995151267105 2 2|0 +|/ 8794936 8796153 8795676.556 8793069 8796554 + gene protein_coding_gene FALSE TRUE AT2G20360.1 catalytic/ coenzyme binding similar to putative NADH:ubiquinone oxidoreductase 39 kDa subunit precursor [Chlamydomonas reinhardtii] (GB:AAQ55458.1); similar to Os02g0816800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048516.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.0165321337524393 0.184126114528091 0.858282644330185 1 0.789182763044674 19.4274791167516 0.0165321337524393 0.0855252171863523
ATCG01050_at 11.9549314519676 12.9619682515212 12.2280860342115 12.7106938377685 11.7160754064813 11.9809468238765 11.9461028922427 12.6990093274330 12.7849147114273 13.0749539743176 13.3982705411885 13.5537084510873 13.2669891877077 13.198672205957 13.1956319526757 13.4274202274365 12.7192213944899 13.1815086349646 12.9779501737973 0.0921761219393986 0.088064741112221 0.0945233174166369 0.090907330896079 0.088064741112221 0.092347801758677 0.0882519288441418 0.088064741112221 0.0987430991656977 0.0918571347163526 0.088064741112221 0.0900229571857745 0.0902355050457774 0.0882681589313843 0.0931419750292633 0.0913074756147961 0.102205617852487 0.0887112254293524 0.0894249218133649 C C - 115682 116233 115943 115665 117185 - gene protein_coding_gene FALSE TRUE ATCG01050.1 Represents a plastid-encoded subunit of a NAD(P)H dehydrogenase complex. Its mRNA is edited at four positions. Translation data is not available for this gene. Identical to NAD(P)H-quinone oxidoreductase chain 4, chloroplast (EC 1.6.5.-) (NAD(P)H dehydrogenase, chain 4) (NADH-plastoquinone oxidoreductase chain 4) (ndhD) [Arabidopsis Thaliana] (GB:P26288;GB:Q9MRT9); similar to NADH-plastoquinone oxidoreductase subunit 4 [Gossypium hirsutum] (GB:YP_538990.1); similar to NADH-plastoquinone oxidoreductase subunit 4 [Platanus occidentalis] (GB:YP_740615.1); similar to NADH dehydrogenase 4-like ORF 509B (GB:1211235CP); contains InterPro domain Proton-translocating NADH-quinone oxidoreductase, chain M; (InterPro:IPR010227); contains InterPro domain NADH/Ubiquinone/plastoquinone (complex I); (InterPro:IPR001750); contains InterPro domain L-Aspartase-like; (InterPro:IPR008948); contains InterPro domain NADH-ubiquinone oxidoreductase, chain 4; (InterPro:IPR003918) 0.032592874692178 0.183788724547960 0.8585390744325 1 0.78911789551273 25.3690354753307 0.032592874692178 0.237536572400961
AT3G59810_at 8.96115695909094 8.90527856565693 8.90968792250065 8.79275304742126 8.85181189082577 8.78291446587011 8.88588557434176 8.92847268277525 8.18009818555772 8.0923967780404 8.09951683110286 8.12643480546395 8.45823874764547 8.46182992844468 8.23471962076735 8.10105740984237 8.13839474370393 7.8763121470074 8.10770242622102 0.135627974012476 0.136619069617020 0.141925306912288 0.144542768294998 0.131679750085671 0.139411470311929 0.136752093191146 0.141330222985167 0.135705516622586 0.139381408575007 0.139776951162990 0.131485758041585 0.133326157904697 0.136489460998172 0.139239902905928 0.132089428848309 0.149410454945309 0.135849562920818 0.142040406653298 3 3|0 +|/ 22107839 22108619 22108177.2 22107492 22108885 + gene protein_coding_gene FALSE TRUE AT3G59810.1 small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative similar to small nuclear ribonucleoprotein F, putative / U6 snRNA-associated Sm-like protein, putative / Sm protein F, putative [Arabidopsis thaliana] (TAIR:AT2G43810.2); similar to Os02g0510100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046930.1); similar to putative Sm protein F [Oryza sativa (japonica cultivar-group)] (GB:BAD23667.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.0127880239187808 -0.182474104855588 0.859538407630372 1 0.788866268399676 17.0341428848205 -0.0127880239187808 0.0264477562640055
AT1G76670_at 9.29646192871784 9.4331139010491 9.38997275855172 9.4471752422604 10.0413147412459 9.73469313149326 10.3336238407238 10.4258037148586 9.81013674284227 9.86563671547505 10.5946951002336 10.2329258721920 10.2346019839796 10.2218249452846 10.1931013310273 10.0413256117448 9.6580386552983 9.94492527988052 10.0007943524811 0.0981264775035675 0.0960948680372284 0.0960948680372284 0.0976083959707487 0.096545793186099 0.101974570970159 0.0977506131561674 0.0960948680372284 0.107543593857845 0.098934901655286 0.0960948680372284 0.0965453913571968 0.0960948680372284 0.0960948680372284 0.0960948680372284 0.0960948680372284 0.100229911154136 0.102118478153674 0.0960948680372284 1 1|0 -|/ 28777791 28778315 28778095.1 28777494 28779795 - gene protein_coding_gene FALSE TRUE AT1G76670.1 transporter-related similar to transporter-related [Arabidopsis thaliana] (TAIR:AT1G21070.1); similar to Os07g0581000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060103.1); similar to Os12g0154600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066187.1); similar to transporter, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG21891.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0145143496197184 0.182094358213735 0.859827129102046 1 0.788793915747913 19.7789544662232 0.0145143496197184 0.061051719965869
AT1G13020_at 6.71218214669423 6.75696580449676 6.4017128373816 6.38380717640403 5.73386034137855 5.69829201872382 6.05624130665148 6.09221085583638 5.59098733987264 6.26740881895774 6.78247036928399 6.53780041005302 5.97237851022951 6.06184125662399 6.30815199256364 6.39871433362521 6.2467193084148 6.09732027718116 6.06795248836628 0.183291590059514 0.178831045036376 0.172235290878276 0.167397359290056 0.174720926913372 0.175510945002998 0.175400875113518 0.168945653760481 0.187216996249521 0.176268448097093 0.174427612402852 0.172695832698929 0.174078717665540 0.173664453004160 0.173031751939382 0.175924158645243 0.192089406262019 0.184416986233175 0.169410717639947 1 1|0 -|/ 4441255 4442340 4441481.4 4440542 4443682 - gene protein_coding_gene FALSE TRUE AT1G13020.1 eukaryotic translation initiation factor, putative (EIF4B5) similar to EIF4B1 (eukaryotic translation initiation factor 4B1) [Arabidopsis thaliana] (TAIR:AT3G26400.1); similar to eukaryotic translation initiation factor 4B [Triticum aestivum] (GB:AAC28254.1); contains InterPro domain Plant specific eukaryotic initiation factor 4B; (InterPro:IPR010433) -0.0123784633831756 -0.181566723760325 0.860228326649234 1 0.788693634340057 12.3674711141021 -0.0123784633831756 0.0120953978831999
AT3G55000_at 6.52422097156935 6.8406933384385 6.21747172171267 6.2608546087094 6.7881256213375 6.8224284406253 6.4911301048612 6.37634038089638 5.63058793204561 6.07827545935925 5.86106899362968 6.25678630138421 6.00578553736324 5.84516871866382 5.9548455787188 6.39240328103373 5.72353066277506 5.37718472972114 5.87887899803531 0.188736853908227 0.189128910346940 0.191013835939703 0.186618673160305 0.185221400364041 0.185230808462938 0.184609859302952 0.185434336311599 0.188368305599354 0.196816304814356 0.196380503325869 0.183500529508354 0.187137164823891 0.187077293693636 0.194545873097201 0.189338454718549 0.192408878714089 0.191695459497556 0.189189603022274 3 3 + 20393106 20394344 20393609.273 20392485 20394764 + gene protein_coding_gene FALSE TRUE AT3G55000.1 TON1A (TONNEAU 1) involved in cortical microtubule organization. mutants exhibit abnormal cell growth. can functionally complement TON1B. encodes a novel protein, similar to human sequence similar to FGFR1 oncogene partner, GB accession AAH11902. similar to TON1B (TONNEAU 1B) [Arabidopsis thaliana] (TAIR:AT3G55005.1); similar to unknown [Solanum tuberosum] (GB:ABA81867.1); contains InterPro domain Lissencephaly type-1-like homology motif; (InterPro:IPR006594) 0.0143199140430081 0.181304673570437 0.860427597751709 1 0.788643936728678 12.4349969094644 0.0143199140430081 0.0590393423995232
AT3G01130_at 9.74058341948648 9.6062154092997 9.65201881874924 9.44476099890994 9.7530891509129 9.4160647543117 9.33363880509135 9.38220334912824 10.0063624235621 9.6745941780489 9.93101051907658 9.98030907836016 9.77168165812054 9.8359178163526 9.9290228005211 9.7922392713567 9.55401598794294 9.5532183710398 9.76020931840372 0.136824001810456 0.121810603283571 0.129337354350626 0.130883569961255 0.121810603283571 0.150332349771349 0.121810603283571 0.126318760143207 0.144633872397121 0.121810603283571 0.131433036802398 0.121810603283571 0.121810603283571 0.140252023519940 0.124212862407400 0.121810603283571 0.124167363956137 0.127926236690515 0.121810603283571 3 3 - 45321 45333 45326.8 44491 45597 - gene protein_coding_gene FALSE TRUE AT3G01130.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G15320.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79949.1) 0.0152640747387869 0.181125346213504 0.860563969926131 1 0.78860996846176 19.3446462938285 0.0152640747387869 0.0727971109669602
AT2G01090_at 8.23633260398734 8.33798096884169 8.02418601071649 8.11819426291465 8.33852623909405 8.06862501687474 8.1143319378251 8.10520687283482 8.35442705770715 8.20217096112642 8.67550467666841 8.60505492097917 8.21837550229277 8.48380564477006 8.34754905106285 8.48181362946521 7.82975659047128 8.22800148389428 8.2531781079525 0.110842697668619 0.111842108150229 0.122830522156212 0.114359320730410 0.109163283218380 0.117636197060393 0.111977824694367 0.11455176888537 0.115321354873028 0.116476660451388 0.114123394591934 0.111260253138573 0.113115671220012 0.112872867347578 0.116746084939714 0.109163283218380 0.121140380861615 0.111031230829573 0.114330695712996 2 2|0 +|/ 80664 80923 80863.5 80014 81200 + gene protein_coding_gene FALSE TRUE AT2G01090.1 ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative similar to ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putative [Arabidopsis thaliana] (TAIR:AT1G15120.1); similar to Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA91661.2); contains InterPro domain Ubiquinol-cytochrome C reductase hinge protein; (InterPro:IPR003422) 0.0138635491914492 0.180613320038182 0.86095337506021 1 0.788513163722342 16.4822520206590 0.0138635491914492 0.0525185631478227
AT4G30330_at 4.50835550347345 5.20125102980418 4.59019993256887 4.64693793720973 4.53887696881922 4.31473381841375 4.69497842823511 5.5249719426516 4.48363233746868 4.8264707579241 4.8734446997845 5.52128289781908 4.97741049717456 5.06717745545664 5.53964705515685 5.03571703863083 4.73005587439675 4.83851124365953 4.68986849178774 0.197150555593094 0.194593117596705 0.187721297449791 0.188227097285085 0.188560615828410 0.193009007818613 0.194520001976075 0.191584297159324 0.194969397439090 0.189832724723694 0.194133485667885 0.189784996756004 0.190438396071341 0.192189591137707 0.193819636824619 0.191536102008328 0.185678345694634 0.198511537040832 0.185678345694634 4 4|0 -|/ 14837068 14837886 14837485.2 14836554 14838026 - gene protein_coding_gene FALSE TRUE AT4G30330.1 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative similar to small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative [Arabidopsis thaliana] (TAIR:AT2G18740.1); similar to PREDICTED: similar to SM protein G, putative isoform 1 [Strongylocentrotus purpuratus] (GB:XP_779936.1); similar to Os02g0126700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045754.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.0267267061275909 -0.180137724623724 0.861315109908844 1 0.78842349013561 9.62231971564033 -0.0267267061275909 0.191337174919758
AT2G30990_at 6.85575851773504 7.70700527408803 6.76304672488165 6.90992279552824 6.86786542685004 6.70486356563941 5.58647463153816 5.4937783654969 6.07099699461673 6.60958687698125 6.73882358916713 7.21470140433293 6.20292365380846 6.01258865126164 5.75310343488213 6.06052469636607 4.92054437573951 5.66283050825268 6.59825800684288 0.23143100634051 0.229445936159821 0.229421894957880 0.233143569876079 0.232827613632204 0.239402167822785 0.229361752906533 0.235798063199494 0.231754717863796 0.23711413483853 0.233758441981431 0.231008209529259 0.229361752906533 0.242633220507195 0.229361752906533 0.235050708291957 0.233396880394071 0.229361752906533 0.235211354559455 2 2 - 13195015 13195458 13195216.273 13194660 13197496 - gene protein_coding_gene FALSE TRUE AT2G30990.1|AT2G30990.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29240.1); similar to Protein of unknown function DUF688 [Medicago truncatula] (GB:ABE80249.1); contains InterPro domain Protein of unknown function DUF688; (InterPro:IPR007789) 0.0225724220448336 0.180020817150864 0.86140403428286 1 0.788401483121477 12.8596072454063 0.0225724220448336 0.152970517188473
AT3G01540_at 9.9176002295166 9.85652006171223 10.1740239657013 10.1363965889769 10.5597069740262 10.2636986413012 10.1367801602239 9.90136126153755 10.2369509664330 10.3205510789376 10.0367292634976 9.9071830253049 9.9449152546915 9.97140669288482 9.78017205520314 10.0471220278513 10.1847278652687 10.1824216736963 10.3658998608587 0.0684358167870385 0.0659980161393702 0.0705905648973404 0.0681160968546144 0.0661830258048115 0.0703123929290754 0.0683075391885546 0.0686776395364712 0.0711834666638129 0.0696165645106855 0.0685891754930681 0.067783879257555 0.0682945572321454 0.0659980161393702 0.070330175653649 0.0659980161393702 0.0670515471127298 0.0718632867830032 0.071186905216365 3 3 - 213146 213845 213498.727 212525 216678 - gene protein_coding_gene FALSE TRUE AT3G01540.1|AT3G01540.2|AT3G01540.3|AT3G01540.4 DRH1 (DEAD box RNA helicase 1) RNA HELICASE DRH1 Identical to DEAD-box ATP-dependent RNA helicase 14 (EC 3.6.1.-) (RH14) [Arabidopsis Thaliana] (GB:Q8H136;GB:O64430;GB:Q8W4F5;GB:Q93WJ3); similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G06480.1); similar to ATP binding / ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT5G14610.1); similar to ATP-dependent RNA helicase-like protein DB10 (GB:P46942); similar to WW/Rsp5/WWP; Helicase, C-terminal [Medicago truncatula] (GB:ABE92110.1); similar to Probable DEAD-box ATP-dependent RNA helicase 46 (GB:Q9LYJ9); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain WW/Rsp5/WWP; (InterPro:IPR001202); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.014712605571922 0.179853453287881 0.8615313413819 1 0.78837000270865 20.2755786692293 0.014712605571922 0.0666180884609702
AT1G19480_at 4.6734887137504 4.89683887833749 4.75770865275553 4.86020674605269 4.58403138081353 4.83612489536167 4.96915931728392 4.91322113216586 4.92283565665274 4.49961227450858 4.72143772719207 4.71212969841614 4.3309188877583 5.22907770175233 4.58942864085864 5.07915402918031 4.36053190412182 4.40452719593495 4.21613167236221 0.226304686534311 0.221524775869666 0.213737578045264 0.220518504805754 0.226357665665067 0.228930872523917 0.213731200021704 0.225601410807651 0.233735901287087 0.216881072964749 0.218953335058576 0.218172195981425 0.212899261380847 0.215189563600246 0.212676164058145 0.212676164058145 0.23091584521198 0.225584440757598 0.22040452448308 1 1|0 +|/ 6745086 6745546 6745311 6744344 6746399 + gene protein_coding_gene FALSE TRUE AT1G19480.1|AT1G19480.2 HhH-GPD base excision DNA repair family protein similar to HhH-GPD base excision DNA repair family protein [Arabidopsis thaliana] (TAIR:AT1G75230.1); similar to 10A19I.4 [Oryza sativa (japonica cultivar-group)] (GB:AAD39589.1); contains InterPro domain DNA glycosylase; (InterPro:IPR011257); contains InterPro domain HhH-GPD; (InterPro:IPR003265) 0.0142742151693728 0.178559040295331 0.862516094363356 1 0.788127510229427 9.4236444267283 0.0142742151693728 0.0616889209878333
AT2G26350_at 4.42795989646046 4.6754485377745 4.9743137180075 4.85091229503714 5.8229579654913 4.8063002679841 5.43377015485933 4.88009512508688 4.55631935434169 4.69188278639753 4.5189649855078 4.40397472570219 4.80894169731461 3.66670640835124 4.36807506875034 4.38761499527216 4.03631205618463 4.93284540531828 4.86932091463151 0.263285623943606 0.261619904902889 0.261501968718179 0.26235056975152 0.256667315125503 0.260840763887760 0.273042139293840 0.262928080286472 0.276003581404288 0.256667315125503 0.259582726325198 0.263792416673356 0.261154060135443 0.260159614929208 0.262437983387014 0.256667315125503 0.266369075970124 0.256667315125503 0.259160927732215 2 2 - 11224872 11226575 11225956.455 11224517 11227585 - gene protein_coding_gene FALSE TRUE AT2G26350.1 PEX10 (peroxin 10); protein binding / zinc ion binding Zinc-binding peroxisomal integral membrane protein (PEX10). Inserted directly from the cytosol into peroxisomes. Required for embryogenesis. Identical to Peroxisome assembly protein 10 (Peroxin-10) (AthPEX10) (Pex10p) (PER8) (PEX10) [Arabidopsis Thaliana] (GB:Q9SYU4;GB:O65895;GB:Q8LBN2;GB:Q8S8Q5;GB:Q9M400); similar to RMA1 (Ring finger protein with Membrane Anchor 1), protein binding / ubiquitin-protein ligase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT4G03510.2); similar to Os07g0608800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060245.1); similar to Putative zinc-binding peroxisomal integral membrane protein [Oryza sativa] (GB:AAK55784.1); contains InterPro domain Pex2 / Pex12, N-terminal; (InterPro:IPR006845); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0280544837860175 -0.178209142935537 0.862782330073132 1 0.78806225953162 9.53210496321618 -0.0280544837860175 0.205973398423653
AT1G65930_at 11.5507299422079 11.5704681085848 11.8158388208342 11.7345485592242 11.7925128049480 11.7966736189356 11.5254121035723 11.6731292043891 12.1263139481639 12.1724504079918 11.9780314105222 11.8288181728623 11.7956491788568 11.9042579834026 11.7697432055759 11.9422956487641 11.7693933622901 12.1475195921352 12.0674429954611 0.0611843013748704 0.059744073237944 0.0624955195610601 0.0613853913406982 0.0610026221412986 0.060015418459396 0.0596922781168913 0.0661567373338415 0.0587723303910948 0.0593415677052732 0.0576488908934013 0.0579529825599957 0.0595528402359577 0.0611892146351391 0.059492502941542 0.0579367460611075 0.0629007029009987 0.0596469864078244 0.061573081406013 1 1|0 +|/ 24544704 24545472 24545180.667 24542567 24545792 + gene protein_coding_gene FALSE TRUE AT1G65930.1 isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative similar to ICDH (ICDH), isocitrate dehydrogenase (NADP+) [Arabidopsis thaliana] (TAIR:AT1G54340.1); similar to isocitrate dehydrogenase, putative / NADP+ isocitrate dehydrogenase, putative [Arabidopsis thaliana] (TAIR:AT5G14590.1); similar to NADP specific isocitrate dehydrogenase [Daucus carota] (GB:BAA34112.1); similar to NADP-dependent isocitrate dehydrogenase [Prunus persica] (GB:AAL11503.1); similar to isocitrate dehydrogenase (NADP+) [Apium graveolens] (GB:CAA73139.1); contains InterPro domain Isocitrate dehydrogenase NADP-dependent, eukaryotic; (InterPro:IPR004790); contains InterPro domain Isocitrate/isopropylmalate dehydrogenase; (InterPro:IPR001804) -0.0125734683037231 -0.178002202207312 0.862939799281122 1 0.788023727888357 23.6894304885904 -0.0125734683037231 0.0293863716929556
AT2G24390_at 5.48235266778959 5.49379030010479 5.83704568315756 6.04344842910193 5.04573540641072 4.97910931383158 5.61530970441524 5.28265019148404 4.62704799837743 4.31397416933748 4.46517971292201 4.47696474767996 4.32397793589529 4.83910951410228 4.17213691492388 4.47921148490408 4.82207042958554 4.02704091424765 4.34632319267283 0.206170511600258 0.206723612851653 0.206808185420423 0.205389989437746 0.209912576589256 0.211378674292832 0.223675732836112 0.206805172328079 0.209138003494033 0.205840365708756 0.209075160303518 0.220827085583161 0.209102637783436 0.209226743015829 0.210627230901119 0.208079968801254 0.219315004108802 0.206752756912891 0.203642250326952 2 2|0 +|/ 10380878 10381705 10381219.375 10380808 10382032 + gene protein_coding_gene FALSE TRUE AT2G24390.1|AT2G24390.2 similar to avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related [Arabidopsis thaliana] (TAIR:AT4G31310.1); similar to Os06g0702700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058493.1); similar to Os02g0141000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045856.1); similar to AIG2-like [Frankia sp. CcI3] (GB:YP_479673.1); contains InterPro domain AIG2-like; (InterPro:IPR009288)|similar to avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related [Arabidopsis thaliana] (TAIR:AT4G31310.1); similar to Os02g0141000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045856.1); similar to hypothetical protein SNOG_11054 [Phaeosphaeria nodorum SN15] (GB:EAT81553.1); similar to conserved hypothetical protein [Caldicellulosiruptor saccharolyticus DSM 8903] (GB:ZP_00885054.1); contains InterPro domain AIG2-like; (InterPro:IPR009288) 0.0147026644151870 0.177912665973546 0.863007932870846 1 0.788007070318155 9.91234350049285 0.0147026644151870 0.0687517889598105
AT1G64140_at 9.16733246932322 9.18390483192434 9.39489676389371 9.38774653702375 9.69466042948875 9.12781486946395 9.60418554751797 9.53064234162058 8.84232677559455 9.36587779687322 9.15117188267542 9.13073267306028 9.36532726917502 9.16538199464625 8.54178664827122 9.42007217848534 9.29294426466571 9.21568189647726 9.25969684522601 0.122925567344359 0.123164951989083 0.125256760669473 0.125615562456675 0.126175521370085 0.139300809534119 0.127111766569745 0.124303659740007 0.144895361026745 0.125475958634068 0.137233707106479 0.124681992663614 0.123830386617387 0.137706446968480 0.143245468263914 0.120509533671921 0.122638038410736 0.129494097521398 0.120735219881309 1 1 - 23807743 23808307 23808009.545 23807456 23810822 - gene protein_coding_gene FALSE TRUE AT1G64140.1 similar to loricrin-related [Arabidopsis thaliana] (TAIR:AT5G64550.1); similar to Os01g0621900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043607.1); similar to loricrin-like [Oryza sativa (japonica cultivar-group)] (GB:BAD20066.1) 0.0170917820359067 0.177782108252204 0.863107284384734 1 0.787982795896707 18.5445752188637 0.0170917820359067 0.0989667321194635
AT4G03550_at 6.94719900992402 7.49156392548587 6.98290263156669 7.46517248662442 6.82750110928673 6.05092365763366 6.79494037185559 6.80559970408551 6.32619913690668 6.23768624610163 7.0540630359087 7.19527226078593 6.38431681320402 6.44954406667203 6.49239450392576 6.34121857928952 5.96908190253219 6.04089354467365 6.22059200793914 0.249674488689935 0.243992866157081 0.252753702704502 0.250339108319029 0.245319698168843 0.264589170289908 0.245117139884021 0.250062710056280 0.248171407830366 0.272809235156976 0.250125063556520 0.241755092629781 0.246753800227024 0.258460553249505 0.244800152915278 0.244354994033782 0.250621184502858 0.256061131422186 0.241755092629781 4 4 + 1578688 1579054 1578844.545 1573346 1579694 + gene protein_coding_gene FALSE TRUE AT4G03550.1 ATGSL05 (GLUCAN SYNTHASE-LIKE 5); 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups Encodes a callose synthase that is required for wound and papillary callose formation in response to fungal pathogens Erysiphe and Blumeria. Mutants are resistant to P. parasitica and exhibit an exaggerated PR1 response.Contributes to PAMP-induced basal defense. similar to CALS1 (CALLOSE SYNTHASE 1), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT1G05570.1); similar to ATGSL1 (GLUCAN SYNTHASE LIKE-1), 1,3-beta-glucan synthase/ transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT4G04970.1); similar to CALS5 (CALLOSE SYNTHASE 5), 1,3-beta-glucan synthase [Arabidopsis thaliana] (TAIR:AT2G13680.1); similar to putative callose synthase 1 catalytic subunit [Oryza sativa (japonica cultivar-group)] (GB:BAD87286.1); similar to 1,3-beta-glucan synthase component-like [Oryza sativa (japonica cultivar-group)] (GB:BAB84371.1); similar to putative beta-1,3-glucan synthase [Nicotiana alata] (GB:AAK49452.2); contains InterPro domain Glycosyl transferase, family 48; (InterPro:IPR003440) 0.0255774215824751 0.177670090649423 0.863192529331225 1 0.787961982705164 13.2968956380694 0.0255774215824751 0.184130774992697
AT1G60220_at 8.1842277334569 8.4057554850736 8.5582401919365 8.29496131360197 9.10621553913375 8.30627579139553 8.77391242586332 8.43810507218996 8.52567716788034 8.32581211735831 8.50238023458714 8.37871235994914 8.39520265770821 8.47202739011477 8.01077879907623 8.47069156001037 7.67147600179915 8.2144590579096 8.42729976662376 0.173107808032496 0.171992916951907 0.174912254978314 0.174973484212292 0.182701325057405 0.175312832528912 0.178748802899453 0.165098798426773 0.181886539008355 0.177647582098619 0.164983096680619 0.164429701141061 0.172307596846778 0.167107839556027 0.176409558490091 0.162807752396447 0.191854386917275 0.165785938770335 0.172813092650977 1 1|0 +|/ 22214430 22215539 22215107.3 22211997 22215836 + gene protein_coding_gene FALSE TRUE AT1G60220.1 cysteine-type peptidase similar to Ulp1 protease family protein [Arabidopsis thaliana] (TAIR:AT1G10570.2); similar to Os01g0738100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044186.1); similar to Os06g0487900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057669.1); similar to Ulp1 protease family, C-terminal catalytic domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99256.1); contains InterPro domain Peptidase C48, SUMO/Sentrin/Ubl1; (InterPro:IPR003653) -0.0229369898860750 -0.175910944354333 0.864531479962657 1 0.787636835346671 16.8538262065473 -0.0229369898860750 0.161512993301649
AT2G19750_at 7.39016725788754 7.59933267273307 7.30645903178812 7.50547807003585 7.49473616251848 6.70680119408467 7.72503755239428 8.17979911243934 6.80439232558598 7.45753752447624 7.85833609830697 8.16754691775936 7.6455776008141 7.43717595166972 8.0352440367845 7.44317104415142 7.25999849002962 6.74264374102499 7.18778107537698 0.163282822173997 0.162391865944691 0.159330400848678 0.157909211118223 0.167629989742847 0.162491422882966 0.168557022973157 0.166038432812529 0.167109918055174 0.160087252416769 0.164089973573963 0.163877807078335 0.165105219496021 0.162186895042656 0.159114101643790 0.159195536363754 0.164182820431448 0.159327710530028 0.155671428803388 2 0|2 /|+ 8522235 8522862 8522504.625 8522119 8522888 + gene protein_coding_gene FALSE TRUE AT2G19750.1 40S ribosomal protein S30 (RPS30A) Identical to 40S ribosomal protein S30 (RPS30C) [Arabidopsis Thaliana] (GB:P49689;GB:O82203;GB:Q9M0E4); similar to 40S ribosomal protein S30 (RPS30B) [Arabidopsis thaliana] (TAIR:AT4G29390.1); similar to 40S ribosomal protein S30 (RPS30C) [Arabidopsis thaliana] (TAIR:AT5G56670.1); similar to Ribosomal protein S30 [Medicago truncatula] (GB:ABE80883.1); similar to Os06g0172600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056941.1); contains InterPro domain Ribosomal protein S30; (InterPro:IPR006846) -0.0232037205011280 -0.175047709504613 0.865188688874447 1 0.787478455638493 14.8502840701755 -0.0232037205011280 0.165175064185949
AT1G50200_at 10.1637676741096 10.1953514526352 10.2979061308168 10.2704615011193 10.5104114814442 10.2037403549805 10.2363945163118 9.95691084898772 9.87776888277755 10.3570225006617 10.0554569658863 10.1106509090660 10.0457821085557 9.90823515907044 9.90379767865976 10.2653864846468 10.051271460973 9.90925105920681 10.3184360687841 0.114430731609565 0.111773997882814 0.111060793213053 0.111355250426562 0.114255205845228 0.118432046451587 0.114158984309963 0.118313420253346 0.128076536705406 0.112588185357525 0.113240684164281 0.110117506213054 0.110440350086647 0.118047757545577 0.110531923064672 0.110117506213054 0.120216950122222 0.124924434148254 0.118711746056128 1 1|0 -|/ 18595112 18596059 18595506.222 18594872 18602149 - gene protein_coding_gene FALSE TRUE AT1G50200.1 ALATS (ALANYL-TRNA SYNTHETASE); ATP binding / alanine-tRNA ligase/ nucleic acid binding Identical to Alanyl-tRNA synthetase, mitochondrial precursor (EC 6.1.1.7) (Alanine--tRNA ligase) (AlaRS) (ALATS) [Arabidopsis Thaliana] (GB:P36428;GB:O04159;GB:Q9SX40); similar to aminoacyl-tRNA synthetase family protein [Arabidopsis thaliana] (TAIR:AT5G22800.1); similar to Phosphoesterase, DHHA1 [Medicago truncatula] (GB:ABE78182.1); similar to Alanyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL51894.1); similar to alanyl-tRNA synthetase [Dictyostelium discoideum] (GB:AAF05592.1); contains InterPro domain Threonyl/alanyl tRNA synthetase, SAD; (InterPro:IPR012947); contains InterPro domain Phosphoesterase, DHHA1; (InterPro:IPR003156); contains InterPro domain Alanyl-tRNA synthetase, class IIc; (InterPro:IPR002318) 0.0146717857980507 0.174632008291172 0.865505215334322 1 0.787402461758204 20.3371870595502 0.0146717857980507 0.0721679535772506
AT2G42950_at 5.21807321763472 5.43502576412783 6.01600297013324 5.89519097888549 4.96415583792031 4.49405957310645 4.79163554073020 5.10925420053188 4.96748292127947 4.98924105538211 4.45652098151619 5.09769720923117 4.60738467900514 4.90873235222985 4.62982487449248 4.71473828593398 5.12066604785794 4.81621342424562 5.14160179451082 0.220480868767354 0.219021139568936 0.213122359181376 0.214017053857299 0.213083141568818 0.222424003582252 0.222460817453108 0.210729756144003 0.219459160636962 0.226294561453268 0.218847995233346 0.210729756144003 0.214523788869244 0.222684656172088 0.216616561082284 0.210729756144003 0.235239212723531 0.217530701824204 0.220785137141186 2 2|0 +|/ 17872843 17873455 17873147.2 17870896 17873564 + gene protein_coding_gene FALSE TRUE AT2G42950.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G29820.1); similar to IMP dehydrogenase/GMP reductase [Medicago truncatula] (GB:ABE93751.1) -0.0174739329941022 -0.174318566754413 0.865743895379765 1 0.787345280419063 10.1537985048195 -0.0174739329941022 0.107173251517869
AT4G19670_at 8.21404821365389 8.33038187268484 8.68348225285044 8.66948099117998 8.85598518244025 8.30664860242938 8.34114986425808 8.01820128481107 8.36260478617416 8.23140623289534 7.70723506198592 7.44838481658875 8.09013653265167 7.68097109362357 6.81278109136723 8.2339366471181 8.20278663704659 8.0639005644437 8.06233314900662 0.187424084232324 0.185096706258588 0.177298478204066 0.175800946102517 0.177895984774550 0.183614481633212 0.173579513337868 0.173313541305987 0.193095360403429 0.176545812235525 0.182470265327824 0.181425780853588 0.176890033515413 0.187452535947454 0.200172656578099 0.179612738746155 0.177729290374192 0.189931666656634 0.176259368133458 4 4|0 -|/ 10699442 10700224 10699806.6 10699248 10702050 - gene protein_coding_gene FALSE TRUE AT4G19670.1|AT4G19670.2 zinc finger (C3HC4-type RING finger) family protein|protein binding / zinc ion binding similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT5G60250.1); similar to Os12g0631200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067341.1); similar to Zinc finger, RING-type; Zinc finger, C6HC-type [Medicago truncatula] (GB:ABE85921.1); contains InterPro domain Zinc finger, C6HC-type; (InterPro:IPR002867); contains InterPro domain Polynucleotidyl transferase, Ribonuclease H fold; (InterPro:IPR012337); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0179054426912362 -0.174196912882749 0.865836536515258 1 0.787323114486061 16.4268212555194 -0.0179054426912362 0.112125002491556
AT1G75020_at 7.4885902688374 7.93178051788937 8.4680513787464 8.28131140834083 7.80194550758226 7.59462896370642 7.46471950077116 7.65454401746248 6.67478751119086 6.70831029853234 6.04208998088246 5.77262222971703 6.32277019850551 5.88352130301827 6.09440972236467 6.35180822210751 6.58081254835732 6.16199784478269 6.37449757274351 0.202579988027297 0.196539773412368 0.198413524413194 0.206596683602038 0.196693074876027 0.205383015135792 0.200950578255163 0.196539773412368 0.202479082751682 0.196539773412368 0.202394674488642 0.199613626338489 0.196539773412368 0.198613795059886 0.201277329643394 0.199045863550645 0.198778012482336 0.199301090674174 0.201474683033339 1 1 + 28175977 28176966 28176620.727 28174679 28177097 + gene protein_coding_gene FALSE TRUE AT1G75020.1|AT1G75020.2 LPAT4; acyltransferase Identical to Probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 4 (EC 2.3.1.51) (Lysophosphatidyl acyltransferase 4) (LPAT4) [Arabidopsis Thaliana] (GB:Q8L4Y2;GB:Q9C9P8;GB:Q9SSH0); similar to LPAT5 [Arabidopsis thaliana] (TAIR:AT3G18850.4); similar to Os05g0502200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055974.1); similar to putative acyl-CoA:1-acylglycerol-3-phosphate acyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD53283.1); similar to Os01g0782500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044448.1); contains InterPro domain Phospholipid/glycerol acyltransferase; (InterPro:IPR002123) -0.0165176914590508 -0.174074343103522 0.865929877341116 1 0.78730079720037 14.2042560122700 -0.0165176914590508 0.0963998220289592
AT1G10950_at 6.83652843946984 8.24971656359952 6.68792443489267 7.09163729861793 6.97337900772872 6.95659630961414 7.02834049046338 7.08966083680012 7.98339091157738 7.768996519632 8.71119561435573 8.8632110639021 8.29262576318807 8.54863773212797 8.29246956096791 8.2794670785794 6.04036734703905 7.56415208837079 7.54524382089234 0.219965351791998 0.215989554626882 0.228630256727353 0.224927936675387 0.220326604958194 0.247740788608500 0.212744207064117 0.228189274837502 0.240728707864957 0.218335093514964 0.213403771099281 0.215786794779153 0.2107406417502 0.212767871535554 0.222754790344770 0.212224157429824 0.263160331876220 0.227138235295816 0.211825198953973 1 1|0 +|/ 3662696 3663556 3663180.1 3659209 3663984 + gene protein_coding_gene FALSE TRUE AT1G10950.1 endomembrane protein 70, putative similar to transporter [Arabidopsis thaliana] (TAIR:AT5G37310.1); similar to Nonaspanin (TM9SF) [Medicago truncatula] (GB:ABE87730.1); similar to Nonaspanin (TM9SF) [Medicago truncatula] (GB:ABE89676.1); similar to Endomembrane protein 70 [Oryza sativa (japonica cultivar-group)] (GB:AAX96186.1); contains InterPro domain Nonaspanin (TM9SF); (InterPro:IPR004240) -0.032769311418688 -0.174060163469599 0.865940675731374 1 0.787298216404048 15.0341693551984 -0.032769311418688 0.254580209175202
AT3G42130_at 5.84689133360874 4.98681801205429 5.4983088550418 5.14370227868749 4.98459267425719 5.14529079163204 5.15013071551512 5.36115630316115 5.77176614627284 5.52578037104448 6.10755637398944 5.78259790053909 5.58909866888752 5.72377547112264 6.11774576356458 5.49687087669668 5.89518744342882 5.9743689903072 5.64063074528366 0.197095810615465 0.19779076442791 0.207414607225261 0.199603737849941 0.189082614611341 0.201580532846171 0.191761962677396 0.201430206364067 0.191327761037580 0.190331925345087 0.203863297162727 0.190419891921751 0.192548761010839 0.193913889930636 0.205930643094286 0.202866358151675 0.190436447214962 0.198365865017540 0.19495617033337 3 0|3 /|- 14309247 14309367 14309332.286 14309227 14309869 - gene protein_coding_gene FALSE TRUE AT3G42130.1 glycine-rich protein similar to ATGRP8/GR-RBP8 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 1, GLYCINE-RICH PROTEIN 8), RNA binding [Arabidopsis thaliana] (TAIR:AT4G39260.1); similar to SGRP-1 [Solanum commersonii] (GB:CAA73034.1) 0.0232828286765724 0.173901585402429 0.866061441652754 1 0.787269368257848 11.0055910072951 0.0232828286765724 0.167409939245524
AT4G32270_at 5.46881327585584 6.02092271412155 6.15594038762813 5.96818412413915 5.902760431566 6.12395017688375 6.21057441710268 6.48962106093365 4.95231609655067 5.10146137821479 4.97396798044031 5.00737147215337 5.59461920989418 4.97345221600216 4.65650676167179 5.71835138582826 5.82571546404892 4.90700333476292 5.42843407057642 0.201856326263081 0.207321660499284 0.202415217530644 0.209727068484000 0.205180506535327 0.221638229997113 0.206100536358296 0.217091301618863 0.225559574564355 0.209382000294637 0.213879848464195 0.204795506320363 0.206700285007415 0.216728549650754 0.225034200355624 0.208141825449168 0.203644837849886 0.207408171242569 0.214917403024744 4 4|0 -|/ 15575068 15576349 15575814.556 15574874 15576549 - gene protein_coding_gene FALSE TRUE AT4G32270.1|AT4G32270.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25340.1); similar to Ubiquitin [Medicago truncatula] (GB:ABE81772.1); contains domain no description (G3D.3.10.20.90); contains domain Ubiquitin-like (SSF54236)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G25340.1); similar to Ubiquitin [Medicago truncatula] (GB:ABE81772.1); contains domain Ubiquitin-like (SSF54236) 0.0183061046852201 0.172692602599403 0.866982270405206 1 0.787050290816087 11.2265261534693 0.0183061046852201 0.118244489393683
AT1G63970_at 9.75005884979193 9.94608781355043 9.74667993902406 9.92199704788147 10.1017422025281 9.7721248791511 10.3570282538947 10.2830015971692 9.87158570688372 10.1866073573058 10.3778870493053 10.2372879609942 10.2727125264923 10.2449040274764 10.2232726983190 10.4263335926899 10.1390580066597 10.0773799463555 10.0087580124221 0.122718657346300 0.112401221639340 0.122181572319167 0.117826882088727 0.112401221639340 0.122062613840856 0.115652268837582 0.117584715005257 0.129789493986298 0.117004084333326 0.112401221639340 0.114000701805754 0.116651042014550 0.114895684601495 0.114137722339995 0.114077597196378 0.122688719346919 0.119679846062335 0.119129129818984 1 1|0 -|/ 23742599 23743863 23743363.1 23742354 23744027 - gene protein_coding_gene FALSE TRUE AT1G63970.1|AT1G63970.2 ISPF (Homolog of E. coli ispF (isoprenoids F)); 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Encodes a protein with 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity. The protein's activity was confirmed by heterologous expression of phenotypic complementation of the E. coli ispF mutant. Plants defective in this gene display an albino lethal phenotype. Identical to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, chloroplast precursor (EC 4.6.1.12) (MECPS) (MECDP-synthase) (ISPF) [Arabidopsis Thaliana] (GB:Q9CAK8;GB:Q8LE87;GB:Q9GDE3;GB:Q9SH48); similar to 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Stevia rebaudiana] (GB:ABG23395.1); contains InterPro domain MECDP-synthase; (InterPro:IPR003526) 0.0145646695219950 0.171736919605080 0.867710323692708 1 0.78687818681632 20.1209258236607 0.0145646695219950 0.074089018534169
AT2G34630_at 7.78014896292703 7.94434915274582 8.40432113293858 8.27023412523021 8.13451485222117 7.82562087175186 8.34593381117288 8.27920182618421 7.28971291851538 7.6848009615466 7.27280333711135 7.60872817345702 7.61148575941944 7.31187889774987 7.07606149630726 7.73724649481328 7.70373785949549 7.55077907548881 7.77515104598234 0.181411782588312 0.181411782588312 0.192855535083986 0.187400659477091 0.187278401045615 0.197101089552203 0.190383172528428 0.190864647203207 0.200228363268822 0.185846156898514 0.182798633275769 0.185544859873736 0.193423482185092 0.187921964430912 0.193229065591049 0.183816566365281 0.183278769265509 0.192392380210081 0.188151190756622 2 2 + 14587844 14588660 14588284.636 14585619 14588806 + gene protein_coding_gene FALSE TRUE AT2G34630.1|AT2G34630.2 GPPS (GERANYLPYROPHOSPHATE SYNTHASE); dimethylallyltranstransferase Encodes a protein with geranyl diphosphate synthase activity. similar to SPS2 (Solanesyl diphosphate synthase 2), dimethylallyltranstransferase [Arabidopsis thaliana] (TAIR:AT1G17050.1); similar to geranylgeranyl diphosphate synthase [Citrus unshiu] (GB:AAN86061.1); contains InterPro domain Polyprenyl synthetase; (InterPro:IPR000092); contains InterPro domain Terpenoid synthase; (InterPro:IPR008949) -0.0139335990032408 -0.170947362301966 0.868311920558344 1 0.786736714654919 15.656696481269 -0.0139335990032408 0.0658539910576968
AT4G39880_at 5.72690979411984 6.22313770779198 5.86559150207661 5.98971453058846 5.64781828514569 5.67021601011732 6.79558077070209 6.87685661561271 5.76637068398523 5.62134242391585 6.64287790914553 6.67774602932885 6.175905551837 6.02852074297901 7.10723639522838 6.50328138480314 5.8794923630206 6.09280703573554 5.84745773271967 0.220951007027849 0.223201962747092 0.219790090059789 0.217392351377529 0.217419231439995 0.234189401652473 0.216790281162177 0.213652306232663 0.240778970918441 0.233544159394084 0.212970646492750 0.213041627971609 0.212970646492750 0.226742464554024 0.221096630752722 0.217461755400622 0.236992050352969 0.235090975399961 0.222102720146085 4 4 + 18504619 18505056 18504778.182 18504531 18505332 + gene protein_coding_gene FALSE TRUE AT4G39880.1 ribosomal protein L23 family protein similar to ribosomal protein L23 family protein [Solanum tuberosum] (GB:ABB17000.1); contains InterPro domain Ribosomal L23 and L15e, core; (InterPro:IPR012678); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Ribosomal protein L25/L23; (InterPro:IPR013025) 0.0155701697807696 0.169770118463586 0.869209080127153 1 0.786526978948572 12.166248338711 0.0155701697807696 0.0897144635715329
AT1G32530_at 6.78690837820617 6.98665119578528 6.95511847100722 6.96774701563985 7.50664996082825 7.07433673243141 6.25643499446923 5.93446840599077 6.36583048346751 6.08756223605731 5.85145621496515 6.00537682349499 5.72662505236322 5.67995917595141 5.4425829086286 6.50302333832696 5.85074691570482 4.89102416252178 6.58517657163276 0.219325932202605 0.216180786888467 0.213557148185679 0.218177216356947 0.219226653914268 0.227293495461218 0.224250564166378 0.212883218538104 0.233882665142496 0.229718429694877 0.221306183535413 0.218565381306303 0.212883218538104 0.224116882088391 0.221831738926534 0.218261439409235 0.232635486185640 0.2210817366144 0.212883218538104 1 1 - 11759648 11760776 11759864.636 11759439 11762587 - gene protein_coding_gene FALSE TRUE AT1G32530.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) protein-related [Arabidopsis thaliana] (TAIR:AT2G35330.1); similar to Os05g0141500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054605.1); similar to Protein kinase domain containing protein [Tetrahymena thermophila SB210] (GB:XP_001016217.1); similar to Os09g0371700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063022.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.0162534308196205 0.168598721722060 0.870101982218437 1 0.786319713108471 12.8535589381517 0.0162534308196205 0.0995047590447321
AT4G31115_at 5.97217829210592 5.33674242549827 5.94278438275204 5.87652066886589 7.0665800108368 5.93043656836586 7.36001820854031 6.23812395790620 4.41829552940924 5.01971699056887 4.85882601804847 4.44650531103087 4.65891937644802 4.88643777265468 4.30667670147132 4.68602106529787 5.87104170790481 4.05240744466393 4.87522851424373 0.324240330153486 0.342291496783607 0.329834857484935 0.329648554732536 0.324240330153486 0.337855474868989 0.324240330153486 0.344274909687517 0.339841964926876 0.325868896677747 0.327063602185064 0.324240330153486 0.339427768635311 0.336421259900106 0.351966176548521 0.328555032926759 0.327361058286687 0.347432146142508 0.324240330153486 4 4 + 15130492 15130609 15130563 15130081 15132041 + gene protein_coding_gene FALSE TRUE AT4G31115.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G04440.1); similar to Os03g0146500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048959.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL55108.1); similar to Os08g0521800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062277.1) -0.0364556166790759 -0.168587043540608 0.87011088495378 1 0.786317653954775 10.9613904490742 -0.0364556166790759 0.297615698335624
AT3G45620_at 9.94437936417818 9.954112009729 9.92764058251952 9.88560975255824 8.65860452650732 8.9426502913536 8.30693836919752 8.32358216625322 7.85546969935045 6.98948376427976 7.10264945910565 7.591203626723 6.93620014658256 7.40170744879182 6.38068167953974 7.19506675259814 7.70232798596501 7.38701940062378 7.37883732081678 0.205310913073910 0.206028518470372 0.20484915076216 0.206085963077125 0.194775332756452 0.204300960983315 0.202487899895317 0.199595199382717 0.212466003850975 0.207612298849101 0.202128921948350 0.196306923835077 0.199327593485098 0.20247915079328 0.216019610570472 0.193699222148640 0.200385367592566 0.208120956188497 0.204173222585488 3 3 + 16758317 16758931 16758647.273 16756881 16759114 + gene protein_coding_gene FALSE TRUE AT3G45620.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G35140.1); similar to WD domain containing protein, putative [Solanum demissum] (GB:ABI34308.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0127750559520365 0.168333870439390 0.870303893533136 1 0.786273048056803 16.5529582947738 0.0127750559520365 0.0498025729074158
AT1G50020_at 10.2112195454478 10.3632537021019 10.6297311900978 10.6607657360626 10.9781934578887 10.6036029395613 11.175543171136 11.2598312244068 10.6860292281084 10.8377606687719 11.0031737764979 10.6594938773422 10.8265198919684 10.8218698826918 10.2038217881201 10.9227204684134 10.6894094020759 10.5671206882367 10.5929755646731 0.114313263675917 0.113721534537197 0.116422915407439 0.114793017299336 0.112838812696986 0.117365443651063 0.114487857506245 0.113299687444376 0.128475938103578 0.112693986077240 0.111979716636839 0.109398847976921 0.116982795606541 0.125556629850390 0.116557600775284 0.113500218484509 0.120848131477721 0.120019767535386 0.113945230698570 1 1|0 -|/ 18523860 18525124 18524548.7 18523614 18525363 - gene protein_coding_gene FALSE TRUE AT1G50020.1 similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABA94185.2) -0.0141054225683366 -0.168300926049379 0.870329009632507 1 0.786267248565934 21.4439449753892 -0.0141054225683366 0.0716663764294717
AFFX-LysX-3_at 4.17291564068882 4.76324174027746 5.36869761352582 4.55123763020184 5.76817808981141 4.8044358934227 5.94171259524823 4.52263103286012 6.52910094017721 6.90008336540738 6.9571116708016 7.03307963035923 6.37676701893247 6.90115175282987 6.56495823888477 6.96572485281477 5.75355353984303 6.05756483429582 6.86925057901462 0.175931841586771 0.166538717261249 0.164406584504836 0.168370960244429 0.164296346099771 0.166310022045030 0.165063441884552 0.164118207771739 0.163066003012831 0.161698827481426 0.162568810545654 0.166161900008907 0.161591824615203 0.166682022144568 0.161834342748487 0.160947580806831 0.170526815746637 0.161648461149211 0.161263940511476 NA NA NA NA NA FALSE FALSE 0.0415530176419532 0.168178783952894 0.870422129513494 1 0.786245756652987 11.6578232314437 0.0415530176419532 0.344344743623284
AT1G08040_at 7.4605720644601 7.48799454427128 7.41959230398335 7.29499963417462 7.9157295661794 7.40338153043719 7.81756011497207 7.84785925238841 7.25533000111573 7.6558615853831 7.62552927576586 7.70907755839795 7.65130622830522 7.64004403012453 7.41563325584915 7.40650233300125 7.53468769383558 7.6819951385482 7.49619584572478 0.128775979559419 0.132032596836582 0.138234214887500 0.134825522147694 0.128852244814048 0.134558355942540 0.134841900040840 0.140341171303123 0.134941399198403 0.128906237914380 0.149163042583625 0.129427873314560 0.126374310325342 0.142351455079101 0.139854843629523 0.131636485012785 0.141749510266666 0.129148041812850 0.127234498909008 1 1|0 -|/ 2495543 2496728 2496252.667 2495339 2498761 - gene protein_coding_gene FALSE TRUE AT1G08040.1|AT1G08040.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G28310.2); similar to Protein of unknown function DUF707 [Medicago truncatula] (GB:ABE91787.1); contains InterPro domain Protein of unknown function DUF707; (InterPro:IPR007877) -0.0155514700877000 -0.168015373347156 0.870546715418625 1 0.78621702743189 15.1070741680098 -0.0155514700877000 0.0915218487988159
AT1G48600_at 10.7733514646204 10.9320911162740 11.0979819587887 11.1270118221102 11.2096622770892 10.975662032365 11.9606315028264 12.0056088920395 10.9264062032629 12.1685351576908 11.9862870315033 12.0146794233942 12.007068316905 11.9945345013155 11.7523295239911 12.1862424401637 12.1105765512511 11.934049755665 12.0286294399568 0.0752106859647276 0.0723417561658169 0.0742086917106786 0.0735052043537043 0.0725932467145975 0.0736543813909686 0.0714242724442602 0.0727111202376912 0.081733174301447 0.0735396645239645 0.0740826409364306 0.0740502901185985 0.0746468769567579 0.0714242724442602 0.0753810650760965 0.0714242724442602 0.0751785474724466 0.0775582072843288 0.0735582319518104 1 1 + 17971849 17972536 17972168.909 17969539 17973022 + gene protein_coding_gene FALSE TRUE AT1G48600.1|AT1G48600.2 phosphoethanolamine N-methyltransferase 2, putative (NMT2) Identical to Putative phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103) (NMT2) [Arabidopsis Thaliana] (GB:Q944H0;GB:Q9LP63;GB:Q9LP64); similar to NMT1 (N-METHYLTRANSFERASE 1), phosphoethanolamine N-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G18000.1); similar to phosphoethanolamine N-methyltransferase 3, putative (NMT3) [Arabidopsis thaliana] (TAIR:AT1G73600.1); similar to phosphoethanolamine N-methyltransferase [Beta vulgaris] (GB:BAE07178.1); similar to Phosphoethanolamine N-methyltransferase (GB:Q9M571); similar to phosphoethanolamine N-methyltransferase [Brassica napus] (GB:AAP83582.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601)|Identical to Putative phosphoethanolamine N-methyltransferase 2 (EC 2.1.1.103) (NMT2) [Arabidopsis Thaliana] (GB:Q944H0;GB:Q9LP63;GB:Q9LP64); similar to NMT1 (N-METHYLTRANSFERASE 1), phosphoethanolamine N-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G18000.1); similar to phosphoethanolamine N-methyltransferase 3, putative (NMT3) [Arabidopsis thaliana] (TAIR:AT1G73600.1); similar to phosphoethanolamine N-methyltransferase [Beta vulgaris] (GB:BAE07178.1); similar to Putative phosphoethanolamine N-methyltransferase 3 (GB:Q9C6B9); similar to phosphoethanolamine N-methyltransferase [Brassica napus] (GB:AAP83582.1); contains InterPro domain SAM (and some other nucleotide) binding motif; (InterPro:IPR000051); contains InterPro domain Methyltransferase type 11; (InterPro:IPR013216); contains InterPro domain Generic methyltransferase; (InterPro:IPR001601) -0.0124886059825022 -0.164559435791592 0.873182445210096 1 0.78561593445854 23.1132890715944 -0.0124886059825022 0.0498025014927407
AT3G22590_at 6.72492249273732 7.03229014374317 6.59361863035921 6.87353213956858 6.895009480311 6.9539699127631 6.75579310531912 6.68458020721427 6.6982911024914 6.37234511775072 6.26825543184377 6.50015623244436 6.32044524962837 6.62073412816548 6.45183010230433 6.79871237850735 6.38378868514452 6.72129946806503 6.45941405407898 0.204199634887795 0.19035232574216 0.195489552522973 0.195426545067488 0.200862856698162 0.188121790036168 0.197218119374726 0.194265556256051 0.198061321244544 0.195025513177833 0.189670436094914 0.194924525703991 0.193532985966850 0.193223247598587 0.198516404383862 0.186924282313656 0.199687847478151 0.18763457723309 0.186813922761722 3 3|0 +|/ 8004708 8005430 8005023.6 8003941 8005586 + gene protein_coding_gene FALSE TRUE AT3G22590.1 RNA pol II accessory factor Cdc73 family protein similar to RNA polymerase II assessory factor Cdc73p (ISS) [Ostreococcus tauri] (GB:CAL55685.1); similar to Os03g0664700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050838.1); contains InterPro domain RNA pol II accessory factor, Cdc73; (InterPro:IPR007852) 0.0138860024514336 0.164046607287612 0.873573705955022 1 0.785527795038268 13.3232992478119 0.0138860024514336 0.0737005772288292
AT3G46040_at 10.0312707085409 10.3441827280534 9.98295824875206 9.94817791739903 10.4468260502350 10.3036342290632 10.0820923934964 10.0065310437951 9.82284446037795 9.49517177901673 9.71439582172523 9.74858587826167 9.61286860516709 9.5104346915113 9.84469796149331 9.6382322766271 9.61524503807148 9.37447135897193 9.82030391496822 0.0985923898603272 0.0965719777122198 0.0983457414396099 0.101064676241288 0.0985300386820679 0.100989826305089 0.0991286362169972 0.0969153096829735 0.105255300404051 0.0982556326634686 0.100574232780395 0.099719194969862 0.101341432015247 0.0975754341186393 0.0983514618891602 0.099151586574469 0.100554617397945 0.100085092095508 0.101187964043811 3 3 + 16925887 16926489 16926149.182 16925524 16926744 + gene protein_coding_gene FALSE TRUE AT3G46040.1 RPS15AD (ribosomal protein S15A D); structural constituent of ribosome Regulated by TCP20. Identical to 40S ribosomal protein S15a-4 (RPS15AD) [Arabidopsis Thaliana] (GB:Q9LX88); similar to 40S ribosomal protein S15A (RPS15aF) [Arabidopsis thaliana] (TAIR:AT5G59850.1); similar to RPS15A (RIBOSOMAL PROTEIN S15A), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT1G07770.2); similar to unknown [Solanum tuberosum] (GB:ABA46758.1); contains InterPro domain Ribosomal protein S8; (InterPro:IPR000630) -0.0130135189590745 -0.163104703313192 0.874292423929741 1 0.785366622579964 19.8157790843 -0.0130135189590745 0.0612664883030601
AT3G17250_at 5.51470241947611 5.82866501824615 5.4891537535014 5.88742767193549 5.74944024291017 5.40136494580637 5.17219466073705 5.33299416052604 4.32778424111716 5.07370076123817 4.89827676271425 4.63972335186206 4.56763924132301 4.9747125631688 3.99671836360373 4.43111436935759 5.02513271788048 4.68273993463829 4.96436431642091 0.237911413852806 0.239055256481934 0.248409376725269 0.251782888467713 0.240099487857593 0.238037349378386 0.236340824557097 0.24253831249045 0.250562727920443 0.236340824557097 0.236340824557097 0.244715557961311 0.237872632402733 0.246595274562899 0.240816536638754 0.239947043036962 0.250404518760705 0.241704178072064 0.239613925674308 3 3 - 5892892 5893439 5893107.455 5892567 5894452 - gene protein_coding_gene FALSE TRUE AT3G17250.1 protein phosphatase 2C-related / PP2C-related similar to protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G48040.1); similar to Protein phosphatase 2C [Medicago truncatula] (GB:ABE82399.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0165491561342335 0.162723158601093 0.874583595966018 1 0.785301597479408 10.2673046604727 0.0165491561342335 0.110023511571722
AT3G04830_at 8.3001689821178 8.34772374927672 8.34193230828445 8.35111255558807 8.57284348435346 8.02730965712851 8.89117113920482 8.78872758241502 7.67945851574745 7.86548816793204 7.96935215983143 7.94035845481151 8.14873257527852 8.232842366511 8.14711934092995 7.9791433145408 7.71405086638812 7.66787683402085 7.69652745171602 0.139753224403001 0.136504571587412 0.146722761946979 0.142332186409247 0.143352706039233 0.144410053681689 0.142031334608980 0.140292804930527 0.150830587227973 0.143509675336444 0.148634843767674 0.139925568061754 0.144785368298317 0.139295525703371 0.136000677801528 0.138256493202001 0.146905276994148 0.138907587987187 0.145843635896628 3 3|0 +|/ 1327917 1329100 1328569.9 1326233 1329370 + gene protein_coding_gene FALSE TRUE AT3G04830.1|AT3G04830.2 binding similar to binding [Arabidopsis thaliana] (TAIR:AT5G28220.1); similar to O-linked GlcNAc transferase like [Nicotiana tabacum] (GB:CAC12882.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.0154359590038899 -0.162655697143283 0.874635080603186 1 0.785290116037612 16.3136699493815 -0.0154359590038899 0.0964222900032556
AT3G56310_at 11.0470928626355 11.1459460271634 11.1240561734849 11.2198581355029 11.1050239549341 10.9438334219495 10.5714608118837 10.4721875634704 10.6889148049950 10.5431798416185 10.3766600259367 10.2455902767170 10.2939473383529 10.2701804749596 10.0433606316906 10.3714384151591 10.6365481428691 10.5803091913635 10.6204231474627 0.083132174561623 0.0828284610601467 0.0852973449702136 0.0823019711151796 0.08201714382659 0.0819255366172677 0.0805548132729602 0.0824667559464884 0.0889822844714646 0.0842857769651541 0.0805548132729602 0.0805548132729602 0.0860978120958702 0.082076395554948 0.0876373848484847 0.0805548132729602 0.0857347323140053 0.083457050778628 0.0857892030887348 3 3|0 +|/ 20895651 20896693 20896403.444 20893782 20896894 + gene protein_coding_gene FALSE TRUE AT3G56310.1|AT3G56310.2 alpha-galactosidase, putative / melibiase, putative / alpha-D-galactoside galactohydrolase, putative similar to ATAGAL2 (ARABIDOPSIS THALIANA ALPHA-GALACTOSIDASE 2), alpha-galactosidase [Arabidopsis thaliana] (TAIR:AT5G08370.2); similar to glycosyl hydrolase family-like protein [Salvia miltiorrhiza] (GB:AAU86897.1); contains InterPro domain Glycoside hydrolase, family 27; (InterPro:IPR002241); contains InterPro domain Glycoside hydrolase, clan GH-D; (InterPro:IPR000111) 0.0118847429759605 0.162338333260441 0.8748772920091 1 0.785236166504775 21.4385624906229 0.0118847429759605 0.0405064485972562
AT3G53110_at 9.06690687434283 9.29630061647602 9.23799753746107 9.32916335071605 9.4995137872071 9.09007837308205 9.5552984581203 9.4538479048434 8.57620363998587 8.94503479474688 9.11632260963652 9.11872215286316 8.84788955569771 8.83162020494883 8.95589689333972 8.9057522187617 8.46166161079601 8.75478296669406 8.85296963446943 0.142062172090591 0.141251727667889 0.144012742022026 0.142193870996535 0.141537609331289 0.144605360696024 0.142459525172844 0.143102940052946 0.164238740938444 0.145045520819267 0.142667698618750 0.140821732879212 0.150267283913961 0.155092322214108 0.14725085577132 0.142233710866255 0.150053868443132 0.157313793772748 0.142025822487471 3 3|0 +|/ 19700561 19701373 19700895 19698718 19701639 + gene protein_coding_gene FALSE TRUE AT3G53110.1 LOS4 (Low expression of osmotically responsive genes 1); ATP-dependent helicase Encodes a putative DEAD-Box RNA Helicase and has RNA-dependent ATPase activity. Mutant is Sensitive to chilling stress and heat stress. Germination of the mutant is inhibited by ABA. LOS4 may be involved in temperature sensing. Is enriched in the nuclear envelope and also located in the cytoplasm. LOS4 is involved in export of poly A RNA. Identical to DEAD-box ATP-dependent RNA helicase 38 (EC 3.6.1.-) (Protein CRYOPHYTE) (Low expression of osmotically-responsive genes 4 protein) (RH38) [Arabidopsis Thaliana] (GB:Q93ZG7;GB:Q9SCQ0); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative / DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT3G19760.1); similar to Os03g0158200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049020.1); similar to ATP-dependent RNA helicase (ISS) [Ostreococcus tauri] (GB:CAL54542.1); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0143890677645437 0.161026007172293 0.875879003856346 1 0.785014191981052 18.1488802209442 0.0143890677645437 0.0845779361475963
AT3G03690_at 4.26871266858655 4.1307076893111 4.36045055893355 4.06426560680525 3.857193777561 4.60589934861836 4.63277677424853 4.55316218448035 5.01883448384693 4.94874342275213 5.02674365427599 5.04060136235957 4.76767123618077 4.86691561793758 5.33423372952532 5.21366952414824 5.28357542778676 5.00721377808334 4.8265016240735 0.207841474773711 0.205696284102505 0.209494584636001 0.205777535849876 0.208039179421114 0.203428075156534 0.222478264549887 0.211242899105007 0.213404309707389 0.203595359319774 0.205581880079900 0.203428075156534 0.217233213642264 0.211725401552966 0.215002566909619 0.207318051187777 0.212574642844494 0.222143352324489 0.204324747030602 3 3|0 -|/ 911646 912299 911828.1 911245 913684 - gene protein_coding_gene FALSE TRUE AT3G03690.1 UNE7 (unfertilized embryo sac 7); acetylglucosaminyltransferase/ transferase, transferring glycosyl groups similar to glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein [Arabidopsis thaliana] (TAIR:AT4G27480.1); similar to secondary cell wall-related glycosyltransferase family 14 [Populus tremula x Populus tremuloides] (GB:AAX33323.1); contains InterPro domain Glycosyl transferase, family 14; (InterPro:IPR003406) -0.0190846542237065 -0.160232354148990 0.876484922006439 1 0.78488081743397 9.30861501849044 -0.0190846542237065 0.142038711299213
AT1G80870_at 4.42613079719802 4.49504481532949 4.34446877568262 4.71377289111907 4.91722011555985 5.04295824152164 5.24437591200782 5.13679514272238 4.81321371931124 5.3449498602586 5.15592754314691 5.72372090545695 5.01761009590462 5.27046651525255 5.44071234484976 5.34836985191213 5.4751776200352 5.50916022092374 5.65206059212876 0.222319609625228 0.225563226799109 0.228532697522020 0.231786526207603 0.226516248278292 0.224580855356202 0.228260650241562 0.225597619713370 0.228100876239258 0.221086400811017 0.234523141146473 0.224499497567804 0.221215229769517 0.227743324031523 0.221018264767133 0.221018264767133 0.230483215694068 0.223379392664261 0.221108933177660 1 1 + 30398625 30399050 30398845.545 30397025 30399275 + gene protein_coding_gene FALSE TRUE AT1G80870.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT2G45590.1); similar to Os03g0251700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049573.1); similar to Protein kinase domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94994.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.0132933762210298 0.159094192379909 0.877354006930475 1 0.784690690435623 10.108954766935 0.0132933762210298 0.0710406510104245
AT1G47330_at 7.77009333994948 7.98707985762327 8.1597274455924 7.841268906371 8.63496587679244 8.18321460991629 7.81707044463076 7.52728318424533 7.59594637639114 7.73913495799742 7.31045674577722 7.31460291229433 7.09290567575745 7.53799263075148 6.66326127657516 7.24837030345468 7.76345750148875 7.02266495021963 7.58672981401653 0.171871044666192 0.164886428965846 0.172573046758235 0.172045316830758 0.164886428965846 0.175049736651371 0.170401833724804 0.167182498789361 0.179551305246370 0.171720297683199 0.170568288103309 0.170382349365268 0.168259612169198 0.172293108041656 0.180415599809946 0.172945562500314 0.186112274127965 0.177666842809117 0.179866630192394 1 1 + 17355635 17356131 17355934.909 17353490 17356315 + gene protein_coding_gene FALSE TRUE AT1G47330.1 similar to CBS domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G14520.1); similar to CBS [Medicago truncatula] (GB:ABE86592.1); similar to Os03g0125800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048820.1); contains InterPro domain Protein of unknown function DUF21; (InterPro:IPR002550); contains InterPro domain CBS; (InterPro:IPR000644) 0.0165113932303125 0.158847886254061 0.87754210610822 1 0.78464972287629 15.4324968159776 0.0165113932303125 0.114341192804179
AT1G05170_at 5.52461684469557 6.1099510433209 6.55202992548 6.60203588878668 5.25109523636578 5.75066837530522 7.04843422839161 7.03956827075039 5.37589955524737 5.76478951520302 6.00071529036142 6.47887900524889 5.9278276399996 5.50233722727579 5.59047495863948 6.41151940368331 6.22940548516367 6.531608026705 5.82764635756656 0.201729445580374 0.193435296440657 0.205851236838956 0.202542018645475 0.197483387782884 0.199827262603905 0.200691008735575 0.193435296440657 0.214154850737339 0.202241217086400 0.197177375843833 0.197147468136583 0.200267021036461 0.203338062308926 0.213950464880559 0.193435296440657 0.21273468402278 0.200935827890008 0.195763999409049 1 1|0 -|/ 1491461 1492582 1491846.625 1491110 1494247 - gene protein_coding_gene FALSE TRUE AT1G05170.1|AT1G05170.2 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G32430.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659)|similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT2G32430.1); similar to Os03g0577500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050543.1); similar to putative Avr9 elicitor response protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25162.1); contains InterPro domain Pyruvate kinase, beta-barrel-like; (InterPro:IPR011037); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.0181494149952313 0.158808921939246 0.87757186314698 1 0.784643247804866 12.1049038211238 0.0181494149952313 0.133461911684011
AT3G60850_at 6.00212177112854 6.35743651267325 5.98578973513737 6.0766059095011 6.19482301553228 6.20873419496662 5.92969386726874 6.45069985637763 6.01642788411932 5.85800001452253 5.90367167720621 6.20670330543156 6.31283244062159 6.38140157668748 5.40606306539622 6.51660540339556 6.11015795489481 5.80593182267758 6.25814566502948 0.182042317757068 0.178469914921669 0.176840507656247 0.176612725204681 0.182609306936466 0.183131230704106 0.185624470471909 0.185475144800948 0.179459143253970 0.18365353192236 0.180282645662898 0.186253912596474 0.177015132502605 0.176637998375743 0.184030036532557 0.176612725204681 0.176664762814064 0.177192116581295 0.184525158071907 3 3 + 22494408 22494939 22494656.727 22492869 22495077 + gene protein_coding_gene FALSE TRUE AT3G60850.1 similar to Os03g0247100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049548.1) -0.0161350350896321 -0.158440603659947 0.877853157879425 1 0.784582118825534 12.2130441546628 -0.0161350350896321 0.110285784110117
AT1G80930_at 7.93709221922713 8.17903653101869 7.91586236152965 7.84988729848815 8.60608149353778 8.1903388718285 8.20430291839177 7.9113245289049 7.56302717089126 7.72953536208654 7.5608288649963 7.70561175357108 7.77421272987816 7.4986601561401 7.63141802705105 7.88044753684175 7.50891890423525 7.56235218343583 7.7852921997153 0.147950301501856 0.150292664351764 0.150609994685585 0.149275319596320 0.151089766096822 0.151186950241269 0.146267933594462 0.150672438761951 0.154466540491572 0.141080379747713 0.144953473971117 0.150703636238803 0.147626859963994 0.149778468879801 0.142637703832242 0.140260193053725 0.148826048985348 0.156766961698584 0.146681927317780 1 1 - 30410720 30411466 30411109.455 30410324 30414602 - gene protein_coding_gene FALSE TRUE AT1G80930.1 MIF4G domain-containing protein / MA3 domain-containing protein similar to RNA binding [Arabidopsis thaliana] (TAIR:AT5G17930.1); similar to PREDICTED: similar to KIAA1604 protein [Strongylocentrotus purpuratus] (GB:XP_782202.2); similar to hypothetical protein DDBDRAFT_0189551 [Dictyostelium discoideum AX4] (GB:XP_647313.1); similar to Major Facilitator Superfamily, putative [Oryza sativa (japonica cultivar-group)] (GB:AAX94836.1); contains InterPro domain Initiation factor eIF-4 gamma, middle; (InterPro:IPR003890); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) 0.0151457411240283 0.158210510989449 0.878028895235655 1 0.784544002424291 15.7657030347407 0.0151457411240283 0.0981340530110188
AT4G27120_at 7.26716069899711 7.3801088885276 7.14610895624106 7.27936711000458 7.62721675036288 7.20175475573514 7.38726084288375 6.31734943960546 6.77294149843544 6.70264086995164 6.73151177144167 6.58526440136304 6.37252482595797 6.80847711951351 6.4373082926713 6.58021273310589 6.57225485582744 6.4797568642921 6.76730072947343 0.194902197742025 0.199274607842256 0.191912060297997 0.179276613533504 0.188489696102526 0.191030302908342 0.190905936477839 0.186823374306588 0.191949745407885 0.182621675419842 0.186799637517015 0.179276613533504 0.193569821134827 0.189188565978810 0.187447244090397 0.179276613533504 0.192109917775348 0.197477244159676 0.184558598471781 4 0|4 /|- 13602258 13603087 13602548.125 13601976 13604431 - gene protein_coding_gene FALSE TRUE AT4G27120.1|AT4G27120.2 similar to DEAD box RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT1G20920.1); similar to putative protein [Medicago truncatula] (GB:ABE91154.1); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0244640421586044 0.158174392830669 0.878056481768158 1 0.784538024206288 13.8600617089489 0.0244640421586044 0.201535760572633
AFFX-DapX-3_at 8.5482357151161 8.737491580256 9.52783369355869 8.77414275786876 9.93574892532343 8.79541932794432 10.1287528325769 8.73086794144081 10.4413347315815 10.6615444923803 10.3821921240440 10.5526794644967 10.2256745840159 10.2242989984095 10.1844583193426 10.4226959262012 10.0793783296157 10.1148072924045 10.6133895189727 0.0863074346907647 0.0852164350789346 0.0856185914996949 0.0862746308851269 0.0814781788571056 0.0887610134391694 0.0807240714783393 0.0845486418720856 0.0897660469603359 0.082552995633808 0.0803522478332362 0.0830582814729965 0.0815240115296975 0.0896038150699988 0.0812352411695005 0.0820856870933734 0.0827089675429184 0.0849750669748767 0.0824922427913884 NA NA NA NA NA FALSE FALSE -0.0384336461677921 -0.157422331845113 0.878630935072083 1 0.784413852470967 19.5699929521579 -0.0384336461677921 0.339923658855921
AT2G25610_at 9.37772915175227 9.61387395202137 9.48619223750406 9.52631115128878 9.77559688657939 9.47837117768853 10.0086835895439 10.1299638800720 9.31561166100415 9.14642729116192 9.51394981755598 9.4006136534489 9.44318062059913 9.60497443922414 9.51078052306253 9.27976952123746 9.16067239175089 9.46060623628683 9.0776054328897 0.116150395348460 0.114458033774019 0.118519911469743 0.122669444372096 0.116973387017562 0.126381468079858 0.118228800043089 0.116701185414489 0.128419950362011 0.114493643605532 0.117665595370509 0.114422452055187 0.116598422393861 0.116982695307437 0.121981669886324 0.117288414657433 0.131642184946824 0.117524352711977 0.11828053269793 2 2 - 10908669 10909547 10909083.182 10908369 10909609 - gene protein_coding_gene FALSE TRUE AT2G25610.1 H+-transporting two-sector ATPase, C subunit family protein similar to vacuolar ATP synthase, putative / V-ATPase, putative [Arabidopsis thaliana] (TAIR:AT4G32530.1); similar to V-ATPase subunit c'' proteolipid [Xerophyta viscosa] (GB:AAR26002.1); contains InterPro domain ATPase, V0 complex, proteolipid subunit C,; (InterPro:IPR000245); contains InterPro domain ATPase, F0/V0 complex, subunit C; (InterPro:IPR002379) 0.0129960793141379 0.156837923974434 0.879077380850571 1 0.784317767769063 18.9754401843468 0.0129960793141379 0.0693139396376456
ATCG00820_at 10.5215749847199 10.6446964206448 10.7284576144286 9.53047107319861 11.1517015367541 10.0666645746407 11.4076745728382 10.9442593477231 12.2039445206377 12.6593311561667 13.2487384688061 13.5477915509730 12.51481690299 12.7240720816635 13.1629718308979 12.9693347389519 12.2611972046969 12.1899350392347 12.2872290733851 0.181897335356578 0.178201602503937 0.180948417542035 0.190708567422787 0.178866146862095 0.18103111392379 0.170634478120381 0.179435480673408 0.175847086659597 0.171817996377887 0.176852187054576 0.173586568083746 0.173915624850158 0.170634478120381 0.174358372989820 0.170634478120381 0.18260726854498 0.173111444068691 0.170938962593647 C C - 84005 84150 84089 84005 84283 - gene protein_coding_gene FALSE TRUE ATCG00820.1 Encodes a 6.8-kDa protein of the small ribosomal subunit. Identical to Chloroplast 30S ribosomal protein S19 (rps19) [Arabidopsis Thaliana] (GB:P56808); similar to RPS19 (40S ribosomal protein S19), RNA binding [Arabidopsis thaliana] (TAIR:AT5G47320.1); similar to ribosomal protein S19 [Eucalyptus globulus subsp. globulus] (GB:YP_636339.1); contains InterPro domain Ribosomal protein S19/S15; (InterPro:IPR002222); contains InterPro domain Ribosomal protein S19, bacterial and organelle form; (InterPro:IPR005732) -0.0331859939228796 -0.156237388374506 0.87953619462614 1 0.784219401434587 23.2298669209551 -0.0331859939228796 0.291759566267001
AT3G14290_at 9.04831660851328 9.1258093850076 9.150401351286 9.23127118190936 9.01146453202457 8.81341052462378 9.11215209826099 9.18200167526921 8.73951182093222 8.75490224533917 8.97328046646275 8.83204672949887 8.66034210651182 8.87975764587624 8.84452595379812 8.62042196132681 8.64868444087452 8.58955481332408 8.64624711233423 0.140339953958233 0.140723056631818 0.142915750906991 0.138868167315080 0.144102783275008 0.159758338444133 0.140858615970966 0.138416803766432 0.152389353083941 0.141256504030831 0.145823322287628 0.139895195470202 0.138486278594166 0.141170245297013 0.150694623713569 0.142138009398924 0.152743785463923 0.148260740171614 0.142849319165292 3 3|0 +|/ 4764847 4766364 4765812 4764164 4766593 + gene protein_coding_gene FALSE TRUE AT3G14290.1 PAE2 (20S proteasome alpha subunit E2); peptidase Encodes 20S proteasome subunit PAE2 (PAE2). Identical to Proteasome subunit alpha type 5-B (EC 3.4.25.1) (20S proteasome alpha subunit E-2) (Proteasome component Z) (PAE2) [Arabidopsis Thaliana] (GB:Q42134); Identical to Proteasome subunit alpha type 5-A (EC 3.4.25.1) (20S proteasome alpha subunit E-1) (PAE1) [Arabidopsis Thaliana] (GB:O81149;GB:Q56ZL5); similar to PAE1 (20S proteasome alpha subunit E1) [Arabidopsis thaliana] (TAIR:AT1G53850.2); similar to Proteasome subunit alpha type 5 (20S proteasome alpha subunit E) (20S proteasome subunit alpha-5) (GB:Q9M4T8); contains InterPro domain 20S proteasome, A and B subunits; (InterPro:IPR001353); contains InterPro domain Proteasome alpha-subunit; (InterPro:IPR000426) -0.0114550028972782 -0.156082168290789 0.879654791772981 1 0.784194037742255 17.8191686650674 -0.0114550028972782 0.0411889779530699
AT4G33780_at 7.12819355001135 7.58481034640684 7.5018996913222 7.86332214204031 7.5461473919047 7.02569795111832 7.69243523226565 7.67359903165671 6.24520833724436 6.52571467455059 6.34499719062218 6.54674261528857 6.76999355778879 6.72377687861194 6.02018612738231 6.98877083151016 6.96460960026166 6.41095291886899 6.80380930168728 0.193337325646735 0.193337325646735 0.200866745404778 0.200683538084131 0.196778522342935 0.205241667698074 0.193337325646735 0.200969993438254 0.209503594281385 0.202611521299787 0.199545791492133 0.19568605043533 0.199099625007002 0.207360268976635 0.206075641946433 0.194673762615467 0.206149919997597 0.195697886368453 0.193724187554293 4 4|0 -|/ 16202176 16203509 16202782.222 16201833 16203643 - gene protein_coding_gene FALSE TRUE AT4G33780.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69935.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABF94797.1) 0.0179250989461635 0.155528815981955 0.88007761109804 1 0.784103821254158 14.0625954101920 0.0179250989461635 0.135198507211683
AT4G16845_at 4.72698254144757 5.36292526644023 5.13977726324083 5.17980569325211 5.29173399462647 4.79348243962889 5.70398600769357 5.00703229555623 4.67381809682022 4.43514853582477 4.66213788470726 4.88199160031166 4.30563535255906 4.66268901680861 4.05404008478761 4.6552201406728 4.1298425753426 4.78200715558477 4.27776931721269 0.265130768880138 0.252010659834745 0.252010659834745 0.25590254351185 0.253425408770079 0.269117210945255 0.256498110402319 0.252010659834745 0.270711511905960 0.253974542994566 0.253399809709916 0.252727874189445 0.257371113695564 0.257445334629891 0.254758079382405 0.25739628136004 0.262537727476230 0.272489193001702 0.25981911954671 4 0|4 /|+ 9478718 9479633 9479371 9476162 9479897 + gene protein_coding_gene FALSE TRUE AT4G16845.1|AT4G16845.2 VRN2 (REDUCED VERNALIZATION RESPONSE 2); transcription factor|VRN2 (REDUCED VERNALIZATION RESPONSE 2) The VERNALIZATION2 (VRN2) gene mediates vernalization and encodes a nuclear-localized zinc finger protein with similarity to Polycomb group (PcG) proteins of plants and animals. In wild-type Arabidopsis, vernalization results in the stable reduction of the levels of the floral repressor FLC. In vrn2 mutants, FLC expression is downregulated normally in response to vernalization, but instead of remaining low, FLC mRNA levels increase when plants are returned to normal temperatures. VRN2 maintains FLC repression after a cold treatment, serving as a mechanism for the cellular memory of vernalization. Required for complete repression of FLC. Required for the methylation of histone H3 Identical to Polycomb group protein VERNALIZATION 2 (VRN2) [Arabidopsis Thaliana] (GB:Q8W5B1;GB:O23524;GB:O23525;GB:Q8W5B2;GB:Q94CF5); similar to EMF2 (EMBRYONIC FLOWER 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G51230.1); similar to EMF2 [Dendrocalamus latiflorus] (GB:ABB77210.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to EMF2 (EMBRYONIC FLOWER 2), transcription factor [Arabidopsis thaliana] (TAIR:AT5G51230.1); similar to vernalization 2 protein-like protein [Allium sativum] (GB:AAT44518.1); contains domain gb def: Polycomb group protein VERNALIZATION 2 (PTHR22597:SF7); contains domain FAMILY NOT NAMED (PTHR22597) -0.0222907601848770 -0.154419441062687 0.880925412307095 1 0.783923912162221 9.64018608421875 -0.0222907601848770 0.184773805316780
AT3G49140_at 8.09077965528026 7.72056865902656 7.57741364750012 7.3056541295975 7.973521554711 7.56812012017378 7.80687888854796 6.99941095098269 7.61189923813015 7.46218101485977 7.55122643808097 7.96925051719182 6.97831088402128 7.20944836627135 8.06730053811685 7.74211673891085 7.23654959744551 7.55569656261267 7.2692369841412 0.190236076053826 0.196151530497927 0.193215363177052 0.189084349811187 0.194769830555289 0.203207052865118 0.190836895256923 0.192666932490322 0.217077040746839 0.197468535315905 0.197135386996793 0.188303286609557 0.194579163907865 0.193349727305734 0.187314029780456 0.188706054439566 0.198993253271239 0.195932279192347 0.196878875668144 3 3|0 -|/ 18223184 18224201 18223654.1 18223047 18228833 - gene protein_coding_gene FALSE TRUE AT3G49140.1 binding similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G24060.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94899.1); similar to Os03g0241800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049519.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0213664337453028 0.154081425397824 0.881183761294179 1 0.783869350064777 15.1235483845817 0.0213664337453028 0.175397899003531
AT2G37630_at 6.9406014782989 6.71250218046999 6.73133701112262 6.95573819312567 5.73849967681997 6.2577643657977 5.85911461214095 6.16022619688557 6.08329495480318 6.26796262243403 5.86398679785425 6.49435485193228 6.57045580581136 6.20342175952541 6.4161212181124 6.46254066499655 5.98310194338987 5.87669882582456 6.26162329829785 0.208196146856751 0.220244052526398 0.212829554082942 0.206892965157654 0.206892965157654 0.218167160104625 0.206892965157654 0.210039888538489 0.219658631980648 0.211404834422130 0.212112981937647 0.209350580736474 0.208502412636191 0.208948905090209 0.21226785467028 0.207669895715982 0.213548162043029 0.207537732412814 0.206892965157654 2 2 - 15788879 15789395 15789142.091 15788693 15790511 - gene protein_coding_gene FALSE TRUE AT2G37630.1 AS1 (ASYMMETRIC LEAVES 1); DNA binding / transcription factor Encodes a MYB-domain protein involved in specification of the leaf proximodistal axis. Mutation results in lobed and dissected leaves with a characteristic asymmetry. Homologous to the Antirrhinum PHANTASTICA (PHAN) and maize ROUGH SHEATH2 (RS2) genes Asymmetric placement of auxin response at the distal leaf tip precedes visible asymmetric leaf growth. Acts alongside AXR1 to exclude BP expression in leaves and with PIN1 to repress BP and promote lateral organ growth. Identical to Protein ASYMMETRIC LEAVES1 (Myb-related protein 91) (AtMYB91) (Protein PHANTASTICA) (AS1) [Arabidopsis Thaliana] (GB:O80931); similar to MYB59 (myb domain protein 59), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G59780.3); similar to asymmetric leaves 1 [Cardamine hirsuta] (GB:ABF59515.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.0161326515100602 0.152594423695331 0.882320470490247 1 0.783630731501159 12.6385373936373 0.0161326515100602 0.117713963148969
AT4G33680_at 10.1530772365554 10.0251244793232 10.1370053150914 9.90928666512366 9.80549880448052 9.66009579844437 10.2509517625074 10.1334593221203 9.84557935611722 9.8870599750758 9.96359319574378 10.3461079917683 9.95456592174458 9.9698734580931 10.5204728904982 10.1624373626062 9.8880605058768 10.1138280315522 9.75301519193008 0.0747617671156674 0.0713028827557693 0.0727332327419537 0.0736438875230745 0.0713028827557693 0.0720457176855947 0.0713028827557693 0.0728059119725437 0.0794589965267416 0.0761218570241118 0.0772156445045487 0.0713028827557693 0.0713028827557693 0.073171446598712 0.0769653840782063 0.0739836647772095 0.0781662334945607 0.0732062960961484 0.0758901377761095 4 4 - 16171898 16172567 16172278 16171697 16174689 - gene protein_coding_gene FALSE TRUE AT4G33680.1 AGD2 (ABERRANT GROWTH AND DEATH 2); transaminase Involved in disease resistance against Pseudomonas syringae. mutants have elevated SA levels, a low level of spontaneous cell death, callose deposition, and enlarged cells in leaves. genetically maps on chr 4 between L23H3 and nga1139. similar to ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1), transaminase [Arabidopsis thaliana] (TAIR:AT2G13810.1); similar to Aspartate aminotransferase, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95474.1); similar to Aminotransferases class-I pyridoxal-phosphate-binding site [Medicago truncatula] (GB:ABE84803.1); similar to putative aminotransferase AGD2 [Oryza sativa (japonica cultivar-group)] (GB:AAR01225.1); contains InterPro domain Aminotransferase, class I and II; (InterPro:IPR004839) 0.0118171788430619 0.151930397272831 0.882828165565357 1 0.783524918442483 19.9810218866773 0.0118171788430619 0.055586440108645
AT1G24560_at 7.43099516737245 7.3607879184633 7.79154869082231 7.4504453321053 7.9513677784414 7.4939625268739 7.54473553268297 7.53635253650588 7.59967364384312 7.62686582074473 7.51002495189538 7.36055329260753 7.35430262034865 7.65078515296534 7.14890284461046 7.8016104005858 7.49955601632977 7.08340325675088 7.57555147236008 0.209485937227347 0.204170346492242 0.208633894832598 0.204504558520170 0.211142433219052 0.214292361168702 0.204251369909648 0.209101930228135 0.234369548073083 0.204632473995738 0.202796150014513 0.205430899055258 0.209999657888877 0.209961067781099 0.220217188069852 0.198038198765271 0.235417949319362 0.234065916090165 0.207514534659355 1 1|0 +|/ 8704835 8705596 8705238.857 8702372 8705835 + gene protein_coding_gene FALSE TRUE AT1G24560.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G49055.1); similar to myosin heavy chain -related-like [Oryza sativa (japonica cultivar-group)] (GB:BAD13141.1); similar to Os09g0565400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063947.1); contains InterPro domain Lipoprotein, type 6; (InterPro:IPR001800); contains InterPro domain t-snare; (InterPro:IPR010989) 0.0145293156668320 0.150719304733145 0.883754278339848 1 0.783333111480522 15.0834440834056 0.0145293156668320 0.0994982147035358
AT1G12230_at 8.1072827906429 8.39689347628915 8.19922306509128 7.93993491834469 8.6399764565882 8.26428121185211 8.8764817323941 8.72394466816987 8.46608284194562 8.73534405981934 8.95737109322605 8.92196733904307 8.37362814163449 8.94716771417468 9.1908353776308 8.79008333812966 8.442111786405 9.11501060577555 8.44354137863405 0.138940660859794 0.134064714448010 0.140008199590038 0.13836635450042 0.134064714448010 0.143823728972492 0.137099762610462 0.138238105028536 0.147793840803649 0.142489682099407 0.139325520956472 0.134064714448010 0.139658330176389 0.134064714448010 0.138694775539394 0.136423778156137 0.140942963138057 0.141606792266807 0.145058618654472 1 0|1 /|+ 4149973 4150670 4150351.625 4148031 4151023 + gene protein_coding_gene FALSE TRUE AT1G12230.1 transaldolase, putative similar to transaldolase [Gossypium hirsutum] (GB:AAQ17460.1); contains InterPro domain Transaldolase; (InterPro:IPR001585) 0.0143262052322342 0.150359114509016 0.88402974939143 1 0.783276360764668 17.0887996322392 0.0143262052322342 0.0972066955772308
AT1G64370_at 12.5947320831749 12.6286965554781 12.5696272047564 12.6702938800962 12.3786966912841 12.3964548811175 12.4164600312605 12.5815627360903 11.5639989891447 12.1142032223876 11.5195904061399 11.9537016034324 12.4364060178763 11.7435152162864 11.2953751642199 12.6404186715083 12.4996138164629 11.8741779123038 12.0888322150972 0.0827008568797702 0.0854492076356191 0.0852693629322283 0.0837256573684638 0.0871296716660636 0.0827008568797702 0.086292142398568 0.0827008568797702 0.0878130507290336 0.088320810879754 0.0861797376951974 0.0827008568797702 0.0834902316614282 0.0917124503325227 0.0908354207890274 0.0827833657646211 0.0846638852361812 0.0892365357908152 0.0874050743105022 1 1 + 23892653 23893142 23892856.636 23892583 23893324 + gene protein_coding_gene FALSE TRUE AT1G64370.1 similar to hypothetical protein FG03565.1 [Gibberella zeae PH-1] (GB:XP_383741.1) 0.0107051774824107 0.149426758514163 0.884742886200279 1 0.783130088039841 24.4884128378599 0.0107051774824107 0.0341148735561728
AT1G71790_at 4.53535074434738 5.12430312283651 3.59636568794845 3.49979837744049 4.7978690040027 4.16536892013647 4.29584031728351 4.42857174460072 4.94525166114813 4.57834518691219 5.69922318230416 6.1421475178917 5.184340259382 5.59690674144198 5.99623175062598 5.34513970085554 4.81403416257875 5.58649996216354 5.25779016658174 0.252610603513859 0.249299626212012 0.256070308902210 0.263191577883217 0.253349254714825 0.252739118909449 0.249299626212012 0.249447995336157 0.261677259796267 0.249299626212012 0.249299626212012 0.249299626212012 0.253708278874885 0.253532259307341 0.255229971592570 0.25017953530149 0.259327510720482 0.249299626212012 0.250860895317723 1 1|0 +|/ 27000968 27001991 27001426.5 27000471 27002639 + gene protein_coding_gene FALSE TRUE AT1G71790.1 F-actin capping protein beta subunit family protein Identical to Probable F-actin capping protein subunit beta (CapZ-beta) [Arabidopsis Thaliana] (GB:Q9M9G7); similar to subunit of heterodimeric actin capping protein cap32/34 [Dictyostelium discoideum AX4] (GB:XP_647630.1); similar to Os03g0381200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050240.1); contains InterPro domain F-actin capping protein, beta subunit; (InterPro:IPR001698) 0.018635209944884 0.149128150419517 0.884971307870683 1 0.783083432167901 9.5417806970926 0.018635209944884 0.152235405541644
AT3G10260_at 9.6285028954255 9.77799561306451 9.15831993143894 9.12367761080467 9.83390077811573 9.37982398809336 9.46489155022966 9.40809372833573 8.6666890748961 8.71174454475529 8.90030093379162 8.8302584519612 9.30862461631614 9.00014613116893 8.58197384330006 9.11245549135013 8.4687510500697 8.70409057021457 8.544452077263 0.188316105659511 0.174029251161361 0.193057444133875 0.179222442879113 0.187117191070846 0.187594372229828 0.181098073015964 0.181098848144875 0.186128641353149 0.173515607798059 0.181759301242714 0.187521008584761 0.174570619272259 0.18288400675752 0.179917913517608 0.176585925298964 0.191245619074215 0.186570063482729 0.178540999608341 3 3|0 -|/ 3171552 3172182 3171950.375 3171227 3172971 - gene protein_coding_gene FALSE TRUE AT3G10260.1|AT3G10260.2|AT3G10260.3 reticulon family protein similar to reticulon family protein (RTNLB6) [Arabidopsis thaliana] (TAIR:AT3G61560.1); similar to Os07g0142000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058867.1); similar to Os03g0781700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051461.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAB32723.1); contains InterPro domain Reticulon; (InterPro:IPR003388) 0.0132114336996978 0.148632822129873 0.885350236607093 1 0.783006244502491 18.224044279435 0.0132114336996978 0.0835264226278716
AT1G69530_at 11.8513012610556 11.9637796427569 11.4276933823872 11.5014624558758 12.4002209639171 12.2180669855432 12.0030344192586 12.1334327712303 12.2623730447533 11.9671991803527 12.2037363108691 12.4332807817997 12.5696543173440 12.2205881218984 12.4162502461775 12.6469600056079 12.1115398227152 12.3376384351262 12.5035532077685 0.0843912845038957 0.0816006466004679 0.084842317930493 0.0847811103912517 0.0816006466004679 0.087936475681988 0.0816006466004679 0.0829960648536717 0.092949470067248 0.0820596921904373 0.0861224607901017 0.0826854159726582 0.081932451698896 0.0879721086229226 0.0873715969519523 0.0841861776723098 0.0991436867170745 0.0892958623823872 0.0822013109597863 1 1|0 +|/ 26146066 26146690 26146402.8 26145499 26147163 + gene protein_coding_gene FALSE TRUE AT1G69530.1|AT1G69530.2|AT1G69530.3 ATEXPA1 (ARABIDOPSIS THALIANA EXPANSIN A1) Member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. Identical to Expansin-A1 precursor (AtEXPA1) (Alpha-expansin-1) (At-EXP1) (AtEx1) (Ath-ExpAlpha-1.2) (EXPA1) [Arabidopsis Thaliana] (GB:Q9C554;GB:Q38863); similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin 3 [Populus tremula x Populus tremuloides] (GB:AAR09170.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117)|similar to ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A10) [Arabidopsis thaliana] (TAIR:AT1G26770.2); similar to alpha-expansin 3 [Populus tremula x Populus tremuloides] (GB:AAR09170.1); contains InterPro domain Expansin/Lol pI; (InterPro:IPR007118); contains InterPro domain Expansin; (InterPro:IPR002963); contains InterPro domain Barwin-related endoglucanase; (InterPro:IPR009009); contains InterPro domain Expansin 45, endoglucanase-like; (InterPro:IPR007112); contains InterPro domain Rare lipoprotein A; (InterPro:IPR005132); contains InterPro domain Pollen allergen/expansin, C-terminal; (InterPro:IPR007117) 0.0110273921281037 0.147994657599762 0.885838481703322 1 0.782907174935007 24.2432895599950 0.0110273921281037 0.0452189765532371
AT4G27820_at 8.68051417985427 8.3649926525231 8.4756980078668 8.29206171329217 9.05428627660815 8.17903880558132 9.4652288322986 9.07897122390107 6.46392787304274 7.93095896227735 7.61679031216934 7.84632836373228 8.12607050693439 8.44444607570574 6.73228782233039 8.29287161856266 8.1267386674375 6.95784408725576 7.8413115017872 0.2069056017793 0.190876562253445 0.201275156591016 0.200913322861083 0.223215593415528 0.220663550932581 0.220210250120370 0.198043813458071 0.244219601029596 0.19495008165133 0.200622315886151 0.189977512687606 0.193471656621104 0.196640994260575 0.215840644532155 0.191553728341063 0.195122351887688 0.222304655084716 0.195879962700609 4 4|0 -|/ 13857902 13858787 13858327 13857755 13860577 - gene protein_coding_gene FALSE TRUE AT4G27820.1 glycosyl hydrolase family 1 protein similar to hydrolase, hydrolyzing O-glycosyl compounds [Arabidopsis thaliana] (TAIR:AT3G62750.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT4G27830.1); similar to glycosyl hydrolase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G62740.1); similar to Glycoside hydrolase, family 1 [Medicago truncatula] (GB:ABE85054.1); contains InterPro domain Glycoside hydrolase, family 1; (InterPro:IPR001360) -0.0206497259551219 -0.147752355891370 0.886023874695481 1 0.782869670708351 16.2888431085582 -0.0206497259551219 0.177204021000078
AT2G27460_at 5.57503742601951 6.37711874297444 5.74358251539877 4.8941550700126 6.37346232781027 5.85581531761431 5.77450470511333 5.5442779368708 4.8631233080035 4.68592968826703 4.64090555500018 4.8476309415132 5.13744236049829 4.69775901556284 4.75000521059324 4.79773467816828 4.9651682922876 5.36803613943045 4.99916342305316 0.264511021019948 0.253756425854220 0.259439204140875 0.259400927402854 0.260527820076822 0.255165136023497 0.253756425854220 0.260014724363413 0.271364738697799 0.259584441592068 0.260928104910563 0.256835000463458 0.257992733824022 0.254089340017064 0.262678673677688 0.253756425854220 0.275967783763379 0.256492564591869 0.257368765909117 2 2|0 +|/ 11751103 11751890 11751485.7 11747712 11752089 + gene protein_coding_gene FALSE TRUE AT2G27460.1 sec23/sec24 transport family protein similar to protein transport protein Sec24, putative [Arabidopsis thaliana] (TAIR:AT3G07100.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAT69610.1); similar to Os04g0412900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052744.1); similar to Os05g0443300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055673.1); contains InterPro domain Sec23/Sec24 beta-sandwich; (InterPro:IPR012990); contains InterPro domain Zinc finger, Sec23/Sec24-type; (InterPro:IPR006895); contains InterPro domain Sec23/Sec24 trunk region; (InterPro:IPR006896) -0.0249005470058365 -0.147183927358857 0.886458827082672 1 0.782781927401521 10.6422396288466 -0.0249005470058365 0.224692953014392
AT1G24460_at 5.43388202476204 5.97821478812364 5.86822087004391 5.95067585562171 5.91042535539375 5.49126748563222 5.54682741480265 5.71271323412763 5.84417970038406 5.31166719446263 5.43051411949854 5.78590538434184 5.32486670360332 5.2019196498298 5.3495021007204 5.01889463728406 4.87472159249169 5.39583012652625 5.24475241272623 0.222169876137844 0.224000950766136 0.229419954486718 0.236182381534199 0.223530302945690 0.237279483857323 0.222126189006215 0.231057390361423 0.246167993681701 0.220326752659249 0.216415683607179 0.221199328639293 0.244609070465270 0.224231674697105 0.215774611614429 0.217524601403601 0.232426418550218 0.229480933417600 0.221834537329828 1 1|0 +|/ 8671364 8672308 8671789.8 8666060 8672346 + gene protein_coding_gene FALSE TRUE AT1G24460.1 myosin-related similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G31570.1); similar to Prefoldin; t-snare; Protein kinase PKN/PRK1, effector [Medicago truncatula] (GB:ABE84625.1); contains InterPro domain Prefoldin; (InterPro:IPR009053); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) -0.0159295601758708 -0.146647619769051 0.88686923828397 1 0.782699450716177 11.1188462411358 -0.0159295601758708 0.123137654570124
AT2G25510_at 13.9101810720592 14.0494087796529 13.9936407701067 14.2252274182681 13.7744228062540 13.6275861992876 13.5556622495649 13.7814403342927 14.5254406109853 14.0879175361886 14.2898841393122 14.3167067845629 14.2426108815383 14.3579380572404 13.6800699047962 14.1202775837753 14.0162268116033 14.2937534675747 14.0522809374272 0.076793317245678 0.076070180980802 0.0802816404100449 0.07886286264242 0.0783174385993044 0.0827753334809803 0.075482129785642 0.0762984559368973 0.0765425436464934 0.0750761878003943 0.0750761878003943 0.077488181457308 0.078163406523853 0.0790300562938845 0.0801362075162882 0.0750761878003943 0.0791469084355803 0.0772090185108517 0.0760908928419111 2 2 + 10863853 10864131 10863971 10863477 10864234 + gene protein_coding_gene FALSE TRUE AT2G25510.1 unknown protein 0.0119249742600211 0.146187452189185 0.887221411809988 1 0.782628922004804 28.0579777780195 0.0119249742600211 0.0660228973628973
AT1G76300_at 7.63093810148241 7.44690413973983 7.50640173521794 7.49776860432214 7.31301075965208 7.32558622936299 7.48302082057853 7.50608195185373 6.53291190943174 6.24760366940885 6.27921327737774 6.34294197787448 6.98819873037012 6.52447158684726 6.83246954488102 6.36287648925486 7.03683993204767 6.11823581536008 6.64542025723682 0.220353159706844 0.211722627521066 0.213856108150336 0.21103066740112 0.214598948067893 0.215097395547092 0.217440454647219 0.219681189762849 0.221805184131907 0.214316626077543 0.212509410368776 0.21518628532414 0.212065599869403 0.220223240329513 0.213519088335861 0.21103066740112 0.224981583632124 0.216394235910473 0.215623987963525 1 1|0 +|/ 28630862 28631937 28631299.143 28630778 28632261 + gene protein_coding_gene FALSE TRUE AT1G76300.1 SMD3 (SNRNP CORE PROTEIN SMD3) similar to small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative [Arabidopsis thaliana] (TAIR:AT1G20580.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE94617.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) -0.0103502236911601 -0.145328546422825 0.887878816659147 1 0.782497869506842 13.9816979750816 -0.0103502236911601 0.0322053698265603
AFFX-BioC-5_at 8.6813063991597 8.41253338810766 9.00816220198916 8.54203432014145 7.82192834769402 8.47720195171844 8.2484571894358 8.54480716579527 1.1908612728336 0.752263649154133 0.745853037910717 0.56025786129336 0.583892057107304 0.430553422795300 1.04264554823463 1.08853383441053 1.39055278367820 1.09055776633119 0.738649421473088 0.354379273084702 0.355817648792986 0.356440957505816 0.358691798299896 0.353237466768232 0.356125796165061 0.354085736666068 0.354810794441841 0.344442931881609 0.345395406562446 0.344442931881609 0.344442931881609 0.344442931881609 0.344442931881609 0.346169017375997 0.345724408246308 0.345387995649043 0.347556261372105 0.344442931881609 NA NA NA NA NA FALSE FALSE -0.0183816612111472 -0.144940394081271 0.888175937811908 1 0.782438896928812 9.34731915556707 -0.0183816612111472 0.155433623885628
AT4G38250_at 9.62317308271485 9.91584352723137 9.66460871388853 10.0274489144470 9.93253358688232 9.85920882292161 10.0174445907321 10.4611666553552 9.9816405842667 10.0485718667567 9.96374304861122 9.7406806319921 10.1771094874168 10.129142562171 9.66253177583694 10.0401268427225 9.95824587817863 10.2492651408304 9.62869573735314 0.0800797996232472 0.0764437221583368 0.0881946302826783 0.0824258850037227 0.0829042760868805 0.0853126492373681 0.0780902789800209 0.0790877828158728 0.083210128394239 0.0800832243457663 0.0812609106220103 0.0809081965928171 0.0780032546554184 0.0847262407841995 0.0800445926060209 0.0764437221583368 0.0855632435923462 0.0804381055535872 0.0771539070645924 4 4 + 17936246 17936799 17936527.273 17935396 17937062 + gene protein_coding_gene FALSE TRUE AT4G38250.1 amino acid transporter family protein similar to amino acid transporter family protein [Arabidopsis thaliana] (TAIR:AT2G42005.1); similar to amino acid transport protein (GB:AAB82307.1); similar to OSIGBa0158F05.8 [Oryza sativa (indica cultivar-group)] (GB:CAH66759.1); similar to OSJNBa0017B10.14 [Oryza sativa (japonica cultivar-group)] (GB:CAE03099.2); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.0148270064812113 -0.144269233759869 0.888689738671907 1 0.782337296682954 19.8758826869860 -0.0148270064812113 0.112095454424338
AT3G26560_at 7.46712177091365 8.03515387542637 7.81999291520242 7.63597047631417 8.12051275916095 7.71835165033693 7.74786100667751 7.93154853328293 7.14585666016494 7.47687861419336 7.49620222638544 7.81321914658369 7.61780027315272 7.38098054125407 7.22565870433004 7.82011151479097 7.15613324103643 7.07889163202787 7.71449950083483 0.183144261386037 0.184364154572304 0.192151590609728 0.179584486504204 0.186382472738290 0.185208505537930 0.178400431989558 0.188817780301798 0.190943727843752 0.180641201662769 0.193255751285772 0.177866598614755 0.178472593618244 0.193281281827155 0.187596955436182 0.178408357378921 0.199078197844573 0.200469516743831 0.182979698202936 3 3 - 9751377 9751981 9751696.909 9751141 9755009 - gene protein_coding_gene FALSE TRUE AT3G26560.1 ATP-dependent RNA helicase, putative Identical to Probable pre-mRNA-splicing factor ATP-dependent RNA helicase (EC 3.6.1.-) [Arabidopsis Thaliana] (GB:Q38953;GB:Q9LRV0); similar to MEE29 (maternal effect embryo arrest 29), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT2G35340.1); similar to RNA helicase, putative [Arabidopsis thaliana] (TAIR:AT4G16680.1); similar to EMB2733/ESP3 (EMBRYO DEFECTIVE 2733), ATP-dependent RNA helicase [Arabidopsis thaliana] (TAIR:AT1G32490.1); similar to DEAH (Asp-Glu-Ala-His) box polypeptide 8 [Mus musculus] (GB:NP_659080.2); similar to putative RNA helicase [Oryza sativa (japonica cultivar-group)] (GB:BAD23339.1); similar to mKIAA4096 protein [Mus musculus] (GB:BAD90286.1); contains InterPro domain Nucleic acid-binding, OB-fold, subgroup; (InterPro:IPR012340); contains InterPro domain ATP-dependent helicase, DEAH-box; (InterPro:IPR002464); contains InterPro domain Helicase-associated region; (InterPro:IPR007502); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain Nucleic acid-binding, OB-fold; (InterPro:IPR008994); contains InterPro domain Protein of unknown function DUF1605; (InterPro:IPR011709); contains InterPro domain RNA binding S1; (InterPro:IPR003029); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650) 0.0155826942796393 0.139649903288001 0.892227519543888 1 0.781650749033624 15.2567489159191 0.0155826942796393 0.128573838206315
AT4G01880_at 6.28777290692502 6.06799469417393 6.67755077925117 6.39954700437182 7.24423460990825 6.34659966780437 6.88214867490242 6.59134698012098 5.05183677120041 5.32378664389067 5.23494132191144 5.49556009116579 5.20321066348753 5.03582263161101 4.70884864130935 5.28243878264876 5.64523373073973 4.6589515498937 5.61234045161426 0.238542889949028 0.238675385946294 0.241632687305871 0.240760593526356 0.251418537227652 0.241109220865876 0.243299111736621 0.247620452271753 0.254111303935005 0.254443217587586 0.243643586469460 0.241473018839090 0.249108588953970 0.245012604601356 0.242628901136233 0.241559805279721 0.246527100378828 0.251766270248028 0.241633603086641 4 4 - 810811 811626 811247.545 810699 812925 - gene protein_coding_gene FALSE TRUE AT4G01880.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP46236.1); contains InterPro domain Protein of unknown function DUF715; (InterPro:IPR007871) 0.0192359194987216 0.139305670175298 0.892491258501542 1 0.781600477372912 11.8058730224311 0.0192359194987216 0.174425252474761
AT4G19840_at 11.3802374433442 11.4811107699280 11.7309705645911 11.8078782944487 11.8807826474607 11.6854296715395 12.0289790274201 11.9664579811512 11.1003136787957 11.3038115423097 10.9215757641567 10.5789797085923 11.2019005643002 11.1389469730613 10.6525007404297 11.3272337834513 11.6716924724440 11.0180848151862 10.9122155793292 0.0961392921734963 0.0940727612381515 0.101602677509635 0.0942011353176093 0.102868227573423 0.100042407598749 0.101793220324514 0.097317082193849 0.101342097527757 0.0952292294466016 0.100036405754491 0.0952216304655836 0.0960984809135303 0.0998971667580273 0.0992597431476343 0.0950771609718877 0.0995449851609839 0.0988963421707222 0.0955944933109011 4 4 + 10774500 10775666 10775165.545 10774283 10775911 + gene protein_coding_gene FALSE TRUE AT4G19840.1 ATPP2-A1 (Arabidopsis thaliana phloem protein 2-A1) encodes a protein similar to phloem lectin in cucumber and celery. Gene is expressed in the phloem, predominantly in the companion cells. similar to ATPP2-A5, transmembrane receptor [Arabidopsis thaliana] (TAIR:AT1G65390.1); similar to Os01g0158400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042077.1); similar to unnamed protein product [Oryza sativa (japonica cultivar-group)] (GB:BAB08190.1); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.0102432041368379 0.139291943378695 0.8925017757695 1 0.781598475277034 22.8298864430759 0.0102432041368379 0.0417352073840924
AT2G28740_at 6.45957165869752 6.97916745496564 6.30824368589928 6.91490604538702 6.59316772932431 6.32234823766523 7.35690611368602 7.14379714350797 7.6266967921864 7.50618031913727 7.71789328676939 8.38521703753547 7.47302827933149 7.91791663160982 8.37300258295014 7.89316096520963 7.41899225451592 7.27290625146081 7.03936901722041 0.204642613852179 0.199811872251582 0.212513295964626 0.208991734579496 0.203065447382298 0.205281824529378 0.197504282425761 0.199956854633450 0.210779211655217 0.203654482122567 0.210532923069237 0.194829089497546 0.198806815097481 0.196388916360713 0.212628238933037 0.196144870394505 0.194790443421347 0.199180914922764 0.207651587123789 2 2 - 12336725 12336968 12336859.364 12336565 12337072 - gene protein_coding_gene FALSE TRUE AT2G28740.1 HIS4 (Histone H4) histone 4 Identical to Histone H4 [Arabidopsis Thaliana] (GB:P59259;GB:P02308); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59690.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT5G59970.1); similar to histone H4 [Arabidopsis thaliana] (TAIR:AT3G53730.1); similar to histone H4 [Nicotiana tabacum] (GB:BAF36442.1); similar to Os01g0835900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044729.1); similar to Histone H4 homologue [Sesbania rostrata] (GB:CAB01913.1); contains InterPro domain Histone-fold; (InterPro:IPR009072); contains InterPro domain Histone core; (InterPro:IPR007125); contains InterPro domain Histone H4; (InterPro:IPR001951); contains InterPro domain Histone-fold/TFIID-TAF/NF-Y; (InterPro:IPR007124) -0.0172141082435948 -0.138843443750627 0.892845421870664 1 0.781533168216246 14.3583951939854 -0.0172141082435948 0.150545387516377
AT4G21790_at 8.60563137085717 9.0133732926824 8.79636256835706 9.01786482378924 9.37092740461688 9.20666278549738 9.11659859652671 9.43132634968596 8.9023967865569 8.8370956103121 8.79454206384155 8.94409230159528 9.10773880401824 8.95636236807359 8.63929938238735 8.76153650725925 8.54956563340214 8.96567823853133 8.8677786866208 0.154066530148201 0.155605160497993 0.156108443474723 0.150482053927352 0.145616499669004 0.155088032973328 0.155963215020653 0.154806541375524 0.155972367299243 0.152618452866481 0.148897508789277 0.148232588503312 0.149137042850038 0.15699038354854 0.151039955557170 0.154087002675110 0.166942645974489 0.146205564013613 0.145836356035848 4 0|4 /|+ 11570762 11572147 11571553.125 11569777 11572561 + gene protein_coding_gene FALSE TRUE AT4G21790.1 TOM1 (TOBAMOVIRUS MULTIPLICATION 1) encodes a host factor that is required for TMV virus multiplication. similar to TOM3 (tobamovirus multiplication protein 3) [Arabidopsis thaliana] (TAIR:AT2G02180.1); similar to tobamovirus multiplication 1 [Nicotiana tabacum] (GB:BAE43836.1); contains InterPro domain Protein of unknown function DUF1084; (InterPro:IPR009457) 0.0134917721762018 0.138812518794026 0.89286911784588 1 0.781528672886445 17.9243145357775 0.0134917721762018 0.101107940442766
AT3G24200_at 8.74240252653595 8.61092612547745 8.6534922921747 8.59713767704471 8.50744089934044 8.53367549177708 8.40590179749258 8.67782790398184 7.99509363627884 7.95308864924606 7.60469363072436 8.02644724474321 7.96539950523934 7.97034460644374 8.30736417125984 7.8633666182533 8.17333673438227 7.74772460904813 7.75107476729487 0.153684126975718 0.159216474724576 0.151906787051240 0.154097732947652 0.155625678045871 0.159792120918873 0.162462026926675 0.157124290058538 0.160138281012225 0.157918251650895 0.164554195744601 0.155075829961182 0.159380973268329 0.157149451310957 0.161354108581221 0.155785523228859 0.162097140305389 0.161449991526182 0.156977123277636 3 3|0 -|/ 8748106 8748663 8748438.6 8747838 8751641 - gene protein_coding_gene FALSE TRUE AT3G24200.1|AT3G24200.2 monooxygenase similar to Os03g0839100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051840.1); similar to putative oxygenase [Oryza sativa (japonica cultivar-group)] (GB:AAO41133.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042); contains InterPro domain Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; (InterPro:IPR010971) 0.0106271453920643 0.137950676358364 0.893529542607866 1 0.781403794166939 16.5196440847039 0.0106271453920643 0.0533653972868851
AT1G44760_at 5.33336998402776 5.87291735569105 5.3327934455911 5.15122956597624 5.52786933268659 5.75098442114133 4.99638155765043 5.01870826042144 4.96967135017756 5.01382520643055 4.96944464995541 5.35618158964047 4.60633785597557 4.5050115021057 4.82237130014927 4.8300485821193 5.1099960167439 4.80195706210731 4.96615667495012 0.232878106292130 0.239707389364635 0.241477362971262 0.230973348902618 0.232174758754014 0.241258742442162 0.2400001150203 0.234589439277751 0.250840857093115 0.239388877928246 0.231800161051962 0.2379291738845 0.238877694688501 0.239231395998058 0.240599164589078 0.230973348902618 0.239404368925103 0.238786777862722 0.233187061549588 1 1|0 -|/ 16899436 16900775 16900307.2 16899126 16901052 - gene protein_coding_gene FALSE TRUE AT1G44760.1 universal stress protein (USP) family protein similar to universal stress protein (USP) family protein [Arabidopsis thaliana] (TAIR:AT5G17390.1); similar to Os01g0875300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044962.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAN08227.1); similar to Os05g0428400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055612.1); contains InterPro domain UspA; (InterPro:IPR006016) 0.0136628639490077 0.137196431528185 0.894107587918378 1 0.78129514116183 10.3022248972494 0.0136628639490077 0.105882818723586
AT3G23400_at 11.1277538711762 11.1796603729684 11.3953744118123 11.5130562490237 10.9151156800732 10.5035102267373 11.5177170381220 11.5348835486133 11.2541190057849 11.2149870510451 11.2458499665728 11.4525333220409 11.4231550702234 11.5425167888711 11.2005332925951 11.6800346783246 11.4036960267366 11.5153700616135 10.9851810259079 0.0844365621246256 0.0807856430095382 0.0854093375608581 0.083627824127207 0.0820742173385308 0.0883251937801986 0.082219295319356 0.0807856430095382 0.0869164327532746 0.0842464527792798 0.0852825586485213 0.0807856430095382 0.0807856430095382 0.0850377955615648 0.0892770604445101 0.0807856430095382 0.0864752031786224 0.0807856430095382 0.0858406163110269 3 3|0 -|/ 8376678 8377628 8377153.6 8376451 8378312 - gene protein_coding_gene FALSE TRUE AT3G23400.1 plastid-lipid associated protein PAP / fibrillin family protein similar to plastid-lipid associated protein PAP / fibrillin family protein [Arabidopsis thaliana] (TAIR:AT3G26070.1); similar to harpin binding protein 1 [Malus x domestica] (GB:AAR26482.1); contains InterPro domain PAP fibrillin; (InterPro:IPR006843) 0.0116462787422988 0.136923120699267 0.894317066970415 1 0.781255915611982 22.5030790140416 0.0116462787422988 0.0746860780446052
AT4G25570_at 11.2803587752084 11.4173183727045 11.1811630959692 11.3675786104938 11.7241268953764 11.3965094785342 11.6298977539839 11.6148693577963 11.2334133309594 11.1239028505200 11.2065340936893 11.1683028201293 11.3873631290907 11.2410374434556 11.2022051147976 11.1084186508622 11.0608196146256 11.4196342881174 11.1788431496101 0.0775400743556443 0.0755206811101155 0.0829411309408915 0.0761791113577096 0.0743311386033451 0.0802461141719241 0.0758167603428261 0.0770126666947549 0.0792020587988609 0.0747429234638758 0.0743311386033451 0.075453249669709 0.0748651299821264 0.0773348004568831 0.0753368474878731 0.075344943016835 0.0825935322531925 0.0769822991469989 0.0747292904743681 4 4|0 -|/ 13053923 13054876 13054370.9 13053719 13055632 - gene protein_coding_gene FALSE TRUE AT4G25570.1 ACYB-2 (Arabidopsis cytochrome b561 -2); carbon-monoxide oxygenase Encodes cytochrome b561. similar to ACYB-1 (Arabidopsis cytochrome b561 -1), carbon-monoxide oxygenase [Arabidopsis thaliana] (TAIR:AT5G38630.1); similar to cytochrome b561 [Citrullus lanatus] (GB:BAE46406.1); contains InterPro domain Cytochrome b561 / ferric reductase transmembrane; (InterPro:IPR006593); contains InterPro domain Cytochrome b561; (InterPro:IPR004877) -0.0113484637568895 -0.136863150079362 0.89436303261649 1 0.781247319048115 22.6529823781962 -0.0113484637568895 0.0694524445549677
AT2G41790_at 9.09658657745516 9.46435400318197 9.35636290747467 9.404283565532 9.70513085950506 9.2933855622887 9.12354209828287 9.4141782157881 9.2571308482683 9.15047255441507 8.7378691054447 9.09637032219145 8.96368485251557 9.02817283757872 8.60376230787524 9.12844262885421 8.37867315529018 9.13533132523028 8.82238521830019 0.135887638527968 0.138902596008492 0.142282958256146 0.134392242209012 0.135254080749038 0.144659850299505 0.141838643077239 0.133034905768209 0.151203959568983 0.137128593164537 0.134886310413059 0.139749231671565 0.133175657830102 0.142321157115615 0.142311503819484 0.133034905768209 0.157784447415375 0.134526068069385 0.140819487800734 2 2|0 -|/ 17436532 17437542 17437066.8 17436372 17443252 - gene protein_coding_gene FALSE TRUE AT2G41790.1 peptidase M16 family protein / insulinase family protein similar to peptidase M16 family protein / insulinase family protein [Arabidopsis thaliana] (TAIR:AT3G57470.1); similar to putative insulin degrading enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAD52843.1); similar to insulin degrading enzyme [Solanum lycopersicum] (GB:CAC67408.1); similar to putative insulin degrading enzyme [Oryza sativa (japonica cultivar-group)] (GB:BAC79699.1); contains InterPro domain Peptidase M16, C-terminal; (InterPro:IPR007863); contains InterPro domain Peptidase M16, zinc-binding site; (InterPro:IPR001431); contains InterPro domain Peptidase M16, N-terminal; (InterPro:IPR011765) -0.0137495283827789 -0.136390428092868 0.894725374294977 1 0.781179687342763 18.3375785689554 -0.0137495283827789 0.108287538380844
AT4G32600_at 8.59617364069933 8.61119714782641 9.02007760490692 8.97493520321227 9.21971008210662 8.64417680103658 9.33660631449458 9.27108039633784 8.88585735966655 8.72787066728227 8.8429342630789 8.54975944622775 8.79396876837157 9.0881064257138 8.44399330599435 8.90425696519312 8.71562570865551 8.75088607279052 8.78176068980644 0.128036093278303 0.126975207707413 0.141302498792257 0.128371383441415 0.140220262734137 0.14492144932611 0.138196186255919 0.134253255628380 0.138210834217718 0.134409070085129 0.130650681475053 0.130019400163822 0.136577359133044 0.128622971354609 0.131887595762398 0.127772403790159 0.131300296676358 0.139459541551624 0.126975207707413 4 4|0 +|/ 15725217 15725847 15725597.1 15723440 15726105 + gene protein_coding_gene FALSE TRUE AT4G32600.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT1G80400.1); similar to RING zinc finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD19217.1); similar to Os05g0179000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054802.1); similar to Os02g0787500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048342.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0131721607195867 -0.135889547380222 0.895109328115195 1 0.781108281135448 17.7390884530384 -0.0131721607195867 0.100579713881952
AT1G49950_at 7.01975123562842 7.32630942180335 7.13733308236193 7.18615687412583 7.53667735846138 7.48303361687995 7.318245016428 7.34804860590009 6.29170727069892 6.79846389452757 6.46727233608096 6.46003749661246 6.66725239396338 6.4090383418963 5.79601359330745 6.64834926297783 6.98444288118454 6.51612580252128 6.57552118197216 0.184117802504581 0.175640914861978 0.183496268918609 0.178640441610378 0.175804892877226 0.182677672365866 0.181890036103609 0.177496765172680 0.191341636369896 0.179592383706989 0.183947768043977 0.176205088421570 0.180096078346946 0.177105982185302 0.187351530308809 0.175074369607338 0.182262974963731 0.174892244456638 0.182061743138654 1 1|0 -|/ 18498270 18499484 18498613.4 18497771 18500907 - gene protein_coding_gene FALSE TRUE AT1G49950.1|AT1G49950.2|AT1G49950.3 ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding / transcription factor|ATTRB1/TRB1 (TELOMERE REPEAT BINDING FACTOR 1); DNA binding similar to ATTRB2/TRB2 (TELOMERE REPEAT BINDING FACTOR 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT5G67580.2); similar to MYB transcription factor MYB55 [Glycine max] (GB:ABH02826.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Linker histone, N-terminal; (InterPro:IPR003216); contains InterPro domain Histone H1/H5; (InterPro:IPR005818); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Winged helix repressor DNA-binding; (InterPro:IPR011991) 0.0105236970928910 0.135788957014509 0.895186439927199 1 0.781093972371953 13.8188430494324 0.0105236970928910 0.0547595899791155
AT3G20390_at 10.4567524114845 10.5742409924409 10.1569493699209 10.0996054719903 10.0145791604352 9.7512961154873 10.4860935685320 10.5312656370276 10.0479612927118 10.6571472306489 11.0235864565501 10.9954044707626 10.6696142606674 10.8012544867839 11.0720684901272 10.7991613864409 10.0713848675342 11.0278723853997 10.2603060331770 0.0941705342226163 0.0905282245580739 0.0930359397974688 0.0955853365344004 0.093296886261315 0.0990515249773407 0.0923470325629862 0.0929385669464977 0.101632377912969 0.0902025074274826 0.090153526637398 0.0895466088919977 0.0895466088919977 0.0924671928201493 0.0895466088919977 0.0895466088919977 0.10771860945935 0.0923268935823535 0.0906767402060238 3 3|0 -|/ 7110267 7111675 7110982.444 7109955 7111830 - gene protein_coding_gene FALSE TRUE AT3G20390.1 endoribonuclease L-PSP family protein similar to constitutive plastid-lipid associated protein [Solanum lycopersicum] (GB:ABA18634.1); contains InterPro domain Endoribonuclease L-PSP; (InterPro:IPR006175); contains InterPro domain YjgF-like protein; (InterPro:IPR006056) -0.0103710622794009 -0.135714251167383 0.895243709624549 1 0.781083352450474 20.8235219422711 -0.0103710622794009 0.0514675063947114
AT1G52230_at 13.4337832629741 13.4822602300356 13.4090939446305 13.2532473678811 13.4762109417275 13.3829621568156 13.8260071795767 13.7956962886371 13.9738873341605 13.9613904597943 14.4136653401348 14.4216649718373 14.0408728453254 14.0960290385386 14.2396702413021 14.1539139799454 13.8018402284584 14.1152732786061 13.8416618954833 0.0763570634472006 0.0751088427736585 0.0767765224223741 0.0753763781110182 0.0751088427736585 0.0779931012287566 0.0754331179078186 0.0751088427736585 0.0852144812216105 0.0772988643760439 0.0760785716788984 0.0760405535656323 0.0751088427736585 0.0786410874316263 0.0774557842362649 0.0763039390752808 0.0832973083348445 0.0799416839719252 0.0751088427736585 1 1|0 +|/ 19458602 19459138 19458862 19458505 19459337 + gene protein_coding_gene FALSE TRUE AT1G52230.1 photosystem I reaction center subunit VI, chloroplast, putative / PSI-H, putative (PSAH2) Identical to Photosystem I reaction center subunit VI-2, chloroplast precursor (PSI-H1) (PSAH2) [Arabidopsis Thaliana] (GB:Q9SUI6); similar to PSAH-1 (photosystem I subunit H-1) [Arabidopsis thaliana] (TAIR:AT3G16140.1); similar to Photosystem I reaction center subunit VI, chloroplast precursor (PSI-H) (Light-harvesting complex I 11 kDa protein) (GB:O04006); contains InterPro domain Photosystem I reaction centre subunit VI; (InterPro:IPR004928) -0.0096692300848411 -0.135458617424434 0.895439684021955 1 0.781047056463146 27.5504140733671 -0.0096692300848411 0.0329496524425429
AT3G57050_at 9.98679046070383 9.87877957175738 9.80056464245834 9.56891229606945 9.90146069857351 9.79029348715792 10.1302582192158 9.96839067819803 8.95807777349854 9.85141081846236 9.7260945443236 9.6918632391139 9.54845937048632 9.95405138737782 9.19923552671416 9.68069335640465 9.71069653111103 9.80307321553652 9.56930755524392 0.119778375982986 0.115811608011999 0.115504707217123 0.120366162593603 0.117173147227610 0.122754632629589 0.116727781381521 0.115748053416409 0.143138334604594 0.114084432653022 0.118496574141678 0.114084432653022 0.115352485583018 0.120769528339821 0.127361256488598 0.114084432653022 0.124818709138865 0.119768656750222 0.114084432653022 3 0|3 /|- 21122980 21123811 21123434.6 21122679 21125641 - gene protein_coding_gene FALSE TRUE AT3G57050.1|AT3G57050.2|AT3G57050.3 CBL (CYSTATHIONINE BETA-LYASE) Encodes second enzyme in the methionine biosynthetic pathway Identical to Cystathionine beta-lyase, chloroplast precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) [Arabidopsis Thaliana] (GB:P53780;GB:Q8VZL8); similar to MTO1 (METHIONINE OVERACCUMULATION 1) [Arabidopsis thaliana] (TAIR:AT3G01120.1); similar to cystathionine beta-lyase [Solanum tuberosum] (GB:AAF74980.1); contains InterPro domain Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; (InterPro:IPR000277); contains InterPro domain Cystathionine beta-lyase, eukaryotic; (InterPro:IPR006238)|Identical to Cystathionine beta-lyase, chloroplast precursor (EC 4.4.1.8) (CBL) (Beta-cystathionase) (Cysteine lyase) [Arabidopsis Thaliana] (GB:P53780;GB:Q8VZL8); similar to MTO1 (METHIONINE OVERACCUMULATION 1) [Arabidopsis thaliana] (TAIR:AT3G01120.1); similar to cystathionine beta-lyase [Solanum tuberosum] (GB:AAF74980.1); contains InterPro domain Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; (InterPro:IPR000277) -0.0105373853776962 -0.135362515608426 0.895513359728673 1 0.781033429127333 19.440116062826 -0.0105373853776962 0.0557785038223787
AT1G26830_at 9.29517693179808 9.54931367588828 9.39541349498064 9.5690017948401 9.5428701242643 9.33490728067598 9.22573080188968 9.23832024331923 8.86105170049 9.13892339103427 9.04154959560801 8.99282263309415 8.9602384352503 8.90858890607556 8.8980804091456 9.15809601771287 9.03052158775468 8.74743282226428 9.2361615926836 0.111516517203025 0.109659224482532 0.112856327619329 0.110394699192034 0.113790579971992 0.118879425920431 0.113835793137170 0.111286105247745 0.125141931797753 0.110002674982225 0.117165378493292 0.112458513231918 0.115169672928628 0.114508120849672 0.116554153005079 0.109659224482532 0.115348404986919 0.126873821895263 0.110950966343811 1 1 + 9297767 9298285 9297994.091 9295723 9298528 + gene protein_coding_gene FALSE TRUE AT1G26830.1 ATCUL3/ATCUL3A/CUL3/CUL3A (Cullin 3A); protein binding / ubiquitin-protein ligase Cullin, putative, similar to Cullin homolog 3 (CUL-3) SP:Q13618, GI:3639052 from (Homo sapiens); contains Pfam profile PF00888: Cullin family. Interacts with other components of E3 ligase complex suggesting it functions in RUB-modification. Forms complexes with BTB domain proteins forming a novel class of E3-based ubiquitin protein-ligase complexes. Mutant is early flowering and has a reduced sensitivity to far-red light. cul3a/cul3b homozygous/heterozygous plants are embryo lethal. similar to ATCUL3B/CUL3B (Cullin 3B), protein binding / ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT1G69670.1); similar to Cullin family [Medicago truncatula] (GB:ABE90793.1); similar to H0306F03.4 [Oryza sativa (indica cultivar-group)] (GB:CAH68237.1); similar to PREDICTED: similar to Cullin-3 (CUL-3) isoform 3 [Canis familiaris] (GB:XP_860074.1); contains InterPro domain Cullin; (InterPro:IPR001373) 0.0109334166301682 0.135111876008724 0.895705515653813 1 0.78099793346989 18.4167810579233 0.0109334166301682 0.0643161612230788
AT3G24590_at 9.49864811480317 9.39782636908402 9.27825356514773 9.34174743902712 9.34897411963655 9.17497088628843 9.65968213826057 9.59822408099166 9.53093025824787 9.68163956692263 9.8870143883435 9.86693068583205 9.60347340425992 9.83346053271451 9.90713749956773 9.91388008445305 9.74077942034028 9.65583299703225 9.37411893062743 0.117376647625513 0.116813432412215 0.129927196307120 0.119980812784754 0.118458106131869 0.123446043202496 0.124230793919514 0.119870637426062 0.138282869955029 0.118279182024669 0.12001029078116 0.117333335170611 0.120348212824819 0.126425666562663 0.125742931278562 0.117205727163042 0.123464805710786 0.121965743965515 0.122759613678911 3 3|0 +|/ 8971129 8971991 8971611.5 8970679 8972175 + gene protein_coding_gene FALSE TRUE AT3G24590.1 signal peptidase I family protein similar to chloroplast thylakoidal processing peptidase [Arabidopsis thaliana] (TAIR:AT2G30440.1); similar to chloroplast thylakoidal processing peptidase [Medicago sativa] (GB:AAZ32902.1); similar to Os02g0267000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046509.1); similar to Os09g0453400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063344.1); contains InterPro domain Peptidase S26A, signal peptidase I; (InterPro:IPR000223); contains InterPro domain Peptidase S24 and S26, C-terminal region; (InterPro:IPR011056); contains InterPro domain Peptidase S24, S26A and S26B; (InterPro:IPR006198) 0.00977935068768376 0.134757125515311 0.895977501890862 1 0.780947805527905 19.0772707784052 0.00977935068768376 0.0380132657821434
AT3G01740_at 8.4854979375478 8.46219223387668 8.59430779917773 8.32116613984097 8.70074065930376 8.61216261588135 8.31269684313917 8.24850549520902 8.1581621266568 8.1482054543898 7.68058459296528 8.04180939533282 7.99844593228282 8.02722401340002 8.22850866562034 8.18531948091077 8.00952855507165 7.91470161897253 8.32691830845702 0.129374491243293 0.124575948043313 0.132884304210899 0.125844120784539 0.126117785775726 0.137422183748151 0.124233241495489 0.133143697027693 0.132111787849804 0.130908093003638 0.136711413152958 0.125168717659961 0.132520295741191 0.132326543177408 0.130856084886254 0.127367560728155 0.140957233678772 0.129945765044309 0.129150694114293 3 3 + 268170 268476 268341.727 267828 268845 + gene protein_coding_gene FALSE TRUE AT3G01740.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G14290.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE80353.1) -0.0102294192869476 -0.134079362407751 0.896497181356701 1 0.780852399103682 16.5780890046574 -0.0102294192869476 0.0510778457501407
AT4G10320_at 9.81501402815882 9.84035542691935 9.87252819799305 9.75791419032351 9.69392833693011 9.70701348591444 9.88660967317573 9.87956608231409 9.09824928126336 9.65228931732606 9.5360533293342 9.58702313479587 9.3717539821092 9.36368161186383 9.64879857667461 9.64092767022014 9.59099784160196 9.39280237631629 9.56165833155473 0.0995846367070686 0.099547963037309 0.101203127303041 0.101087148579352 0.100645584491138 0.102820533092374 0.099547963037309 0.101150806572334 0.115231250009420 0.104075103313554 0.107075372908334 0.102108567995807 0.103492629773412 0.105368125299424 0.102540270846465 0.102483365554974 0.107377468688404 0.106371350592556 0.105332501505065 4 4 - 6397551 6398120 6397790.875 6397326 6404505 - gene protein_coding_gene FALSE TRUE AT4G10320.1 isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative similar to OVA2 (OVULE ABORTION 2), ATP binding / aminoacyl-tRNA ligase [Arabidopsis thaliana] (TAIR:AT5G49030.1); similar to hypothetical protein LOC334393 [Danio rerio] (GB:NP_956190.1); similar to PREDICTED: similar to Isoleucyl-tRNA synthetase, cytoplasmic (Isoleucine--tRNA ligase) (IleRS) (IRS) isoform 8 [Bos taurus] (GB:XP_883574.1); similar to Isoleucyl-tRNA synthetase (ISS) [Ostreococcus tauri] (GB:CAL52239.1); contains InterPro domain tRNA synthetase, valyl/leucyl, anticodon-binding; (InterPro:IPR013155); contains InterPro domain Aminoacyl-tRNA synthetase, class Ia; (InterPro:IPR002300); contains InterPro domain Aminoacyl-tRNA synthetase, class 1a, anticodon-binding; (InterPro:IPR009080); contains InterPro domain Isoleucyl-tRNA synthetase, class Ia; (InterPro:IPR002301) -0.00921720560096029 -0.133345751718629 0.8970597417621 1 0.78074967090103 19.2835680737558 -0.00921720560096029 0.020475658263347
AT1G15940_at 5.94566424665948 6.26242906854602 6.04178203911072 6.15376786460258 6.87062871526762 6.59582370766065 6.26287535317923 6.34244098956637 6.06219205864905 6.21807654785127 6.14169931181166 5.96247415852122 6.19599826024281 6.3273124372204 5.96979591439129 6.31631010046476 5.83266928776069 5.8934902205411 6.66467922921883 0.160109167546136 0.159951854786154 0.160035132004131 0.167063074479328 0.167000144813581 0.166085549318448 0.161423681668660 0.166136111624520 0.168414871205579 0.162628255225134 0.163204400695927 0.162881008160443 0.164692852909405 0.164787840093246 0.159951854786154 0.162869006801617 0.177938138727001 0.180297505032965 0.166424816073178 1 1 + 5477459 5478018 5477716.091 5473584 5478253 + gene protein_coding_gene FALSE TRUE AT1G15940.1 similar to binding [Arabidopsis thaliana] (TAIR:AT1G80810.1); similar to Tudor [Medicago truncatula] (GB:ABE86625.1); contains domain ARM repeat (SSF48371); contains domain no description (G3D.2.30.30.140); contains domain ANDROGEN INDUCED INHIBITOR OF PROLIFERATION (AS3) / PDS5-RELATED (PTHR12663) -0.0114328666822612 -0.133305466127481 0.897090636059213 1 0.780744045922981 12.5069021597119 -0.0114328666822612 0.0763658016188876
AFFX-r2-Bs-dap-3_at 8.17687415165711 8.65311361741218 9.35468002767755 8.7048081969356 10.0218049903009 8.17662441610367 10.0189738812270 8.78205848280844 10.1988940422398 10.5999918476449 10.5019359787508 10.6170604441302 10.1475094150931 10.4173362641848 9.95282729554433 10.5056359963199 9.75468298174057 9.85166758820541 10.5582673992768 0.147434441790277 0.123550554417882 0.13245688866303 0.124466465417054 0.122401212968606 0.147602829344717 0.122401212968606 0.126576902628431 0.133390521249571 0.122401212968606 0.125247330177662 0.122401212968606 0.122401212968606 0.127872669313332 0.126425197749118 0.122964221408713 0.130303757644495 0.123260857076190 0.122813251881795 NA NA NA NA NA FALSE FALSE -0.0385390298730717 -0.132802219591238 0.89747658239484 1 0.780673921436161 19.3216004331236 -0.0385390298730717 0.408928883871755
AT1G68100_at 6.80118313859454 7.06657102057563 6.41652561456091 6.51831300900905 6.39693927433178 6.18459342892769 5.46814212808643 5.94398018067636 6.1189192406684 5.59791461518021 6.16372564341449 5.83983107271338 5.42189952756286 5.80102608609367 5.97203196464475 5.47888889342281 5.63910835374046 5.68447597985951 5.78883082930235 0.227526795804693 0.240995217929581 0.232678155678476 0.2319347005676 0.242447868815295 0.247157170477571 0.227526795804693 0.231329117405707 0.252975003684960 0.234432259366405 0.228190894775068 0.227526795804693 0.244606667160942 0.237061343533806 0.240848226309446 0.232619541343142 0.2433918045141 0.238610294054933 0.236074459925238 1 1|0 +|/ 25526425 25527668 25527037.5 25524867 25527838 + gene protein_coding_gene FALSE TRUE AT1G68100.1 IAR1 (IAA-ALANINE RESISTANT 1); metal ion transporter member of IAA-alanine resistance protein 1 Identical to IAA-alanine resistance protein 1 (IAR1) [Arabidopsis Thaliana] (GB:Q9M647;GB:Q8VYF8;GB:Q9C9X4); similar to Os08g0467400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062003.1); similar to catsup protein [Drosophila melanogaster] (GB:ABD37814.1); similar to catsup protein [Drosophila melanogaster] (GB:ABD37730.1); contains InterPro domain Zinc/iron permease; (InterPro:IPR003689) -0.0129872034056894 -0.132530098660238 0.897685287493696 1 0.780636112954971 12.1422034752945 -0.0129872034056894 0.102716946948541
AT3G53390_at 6.30170461625784 6.13962149130713 6.17694829322686 5.9056129403142 6.23835338150267 5.31933056970746 5.7680948211704 5.49398789309865 5.00855012489141 5.8123409383391 5.44249732795082 5.26003466548572 5.73327962439593 5.54640216225686 5.31474670183901 5.57002223797833 5.57531402608293 5.11038133029506 5.5730925520912 0.190838998969791 0.194443717227577 0.191040050045133 0.201022473255815 0.194508586757973 0.195016512149133 0.200961771578572 0.197003577815755 0.209114232506471 0.196284872542679 0.190838998969791 0.195556778559354 0.194894086104431 0.208643861866847 0.197430730849626 0.192677105689094 0.214911574996277 0.199611897211962 0.196751596781975 3 3 + 19806388 19807376 19807025 19803509 19807731 + gene protein_coding_gene FALSE TRUE AT3G53390.1 transducin family protein / WD-40 repeat family protein similar to nucleotide binding [Arabidopsis thaliana] (TAIR:AT2G37160.2); similar to Os12g0172500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066281.1); similar to transducin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA96577.2); similar to WD40-like [Medicago truncatula] (GB:ABE83445.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.0181836774211832 -0.131502126542938 0.89847377378952 1 0.780493983261573 11.3723297331446 -0.0181836774211832 0.174745056276455
AT1G13440_at 12.8479584120781 13.0739166244191 13.1301880023105 13.1937549754226 13.1312170997796 13.0500904626657 13.5478376965393 13.7501709374108 13.1958555001673 13.542939838583 13.6756691244717 13.7520233423256 13.5945469880627 13.6426750598948 13.4147329360025 13.5412236243268 13.3456608280437 13.6272765396469 13.3867663004898 0.0751883828670262 0.0714667458330205 0.0714638907408867 0.0742143557457725 0.0718033664690589 0.0765409606859057 0.0775708596485398 0.074869918237536 0.077219256860933 0.0718794068363984 0.0709273470436503 0.0715431630383577 0.0718151770625385 0.073724844644821 0.0709608458382656 0.0710749586829957 0.0745138627076074 0.0734408636766566 0.0714652116576309 1 1|0 -|/ 4608474 4609487 4608983.667 4608193 4610644 - gene protein_coding_gene FALSE TRUE AT1G13440.1|AT1G13440.2 GAPC-2; glyceraldehyde-3-phosphate dehydrogenase|GAPC-2 similar to GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G04120.1); similar to Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (GB:P04796); similar to cystolic glyceraldehyde-3-phosphate dehydrogenase (GB:AAA32794.1); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173)|similar to GAPC (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C SUBUNIT), glyceraldehyde-3-phosphate dehydrogenase [Arabidopsis thaliana] (TAIR:AT3G04120.1); similar to cystolic glyceraldehyde-3-phosphate dehydrogenase (GB:AAA32794.1); contains InterPro domain Glyceraldehyde-3-phosphate dehydrogenase, type I; (InterPro:IPR006424); contains InterPro domain Glyceraldehyde 3-phosphate dehydrogenase; (InterPro:IPR000173) 0.0101902798497973 0.131099736245291 0.898782452018728 1 0.780438647972263 26.6903484105416 0.0101902798497973 0.0554364471003167
AT3G61710_at 7.24466513750139 7.51609233159539 7.27749884542213 7.48726242837967 8.07278522266158 7.00761431731182 7.27309459035785 7.24369442454446 6.95909713103807 6.98007865062178 6.6507673126403 6.73491811519873 6.78431363499878 6.87846984288282 6.67842719471374 7.29793259212206 6.72891575080098 6.7123702377795 7.02904163833283 0.200947088829746 0.184990529631144 0.202534798732385 0.184596587472093 0.185835069888690 0.188766219559535 0.188959095615742 0.188668504100494 0.210139224905185 0.185534714105102 0.188904032474367 0.182434887657303 0.191914800179417 0.186459618256782 0.186025756522692 0.184735697912318 0.188922150269497 0.200713286179383 0.180609479622734 3 0|3 /|- 22850465 22851279 22850728.778 22850290 22853407 - gene protein_coding_gene FALSE TRUE AT3G61710.1|AT3G61710.2|AT3G61710.3 autophagy protein Apg6 family similar to beclin 1 protein [Gossypium raimondii] (GB:CAJ27520.1); similar to beclin 1 protein [Glycine max] (GB:CAJ27519.1); similar to beclin 1 protein [Medicago truncatula] (GB:CAJ27523.1); contains InterPro domain Autophagy protein Apg6; (InterPro:IPR007243)|Identical to Beclin-1-like protein [Arabidopsis Thaliana] (GB:Q9M367); similar to beclin 1 protein [Gossypium raimondii] (GB:CAJ27520.1); contains InterPro domain Moesin; (InterPro:IPR008954); contains InterPro domain Autophagy protein Apg6; (InterPro:IPR007243)|Identical to Beclin-1-like protein [Arabidopsis Thaliana] (GB:Q9M367); similar to beclin 1 protein [Glycine max] (GB:CAJ27519.1); contains InterPro domain Autophagy protein Apg6; (InterPro:IPR007243) -0.0196189445390405 -0.130936793056781 0.898907452790405 1 0.780416288631401 14.2891734831250 -0.0196189445390405 0.193722843947020
AT3G53410_at 5.83705527722217 6.43231169920001 6.16886108735839 5.90780390027303 6.51802016780035 5.95323605977213 5.2191704802266 5.41459410318089 5.20719996323756 5.33162849173087 5.09899488779802 4.76856492187225 4.90717390674320 4.94392747534018 4.64110290667796 5.10562347020628 4.85734307531682 4.55737638619173 5.37298681186929 0.216371391041551 0.201651092971334 0.204759081329981 0.205622189009641 0.203861539097113 0.209705946158031 0.200927160989364 0.20325443173564 0.207994656990515 0.197320006147602 0.199923794531258 0.197794776410904 0.198442407234732 0.21058516696519 0.201279198226575 0.198160528457098 0.211796151348868 0.203383920065172 0.197823399577925 3 3|0 -|/ 19812184 19812797 19812478.9 19811930 19813306 - gene protein_coding_gene FALSE TRUE AT3G53410.1 zinc finger (C3HC4-type RING finger) family protein similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G09770.1); similar to Os10g0204100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064306.1); similar to Os03g0254900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049589.1); similar to zinc finger family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF95025.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0163638148336890 -0.130606532913575 0.899160818771441 1 0.780371054704479 11.0133574974030 -0.0163638148336890 0.152803695683083
AT3G14110_at 7.14924665775996 7.06438726410183 6.28486209252489 6.02054599122336 7.01623719518246 7.42344386063592 6.4343719882635 6.45233249659586 7.18163277899793 7.46430377690859 7.7951909607532 7.88482406868397 7.03964061458426 7.2355791777935 8.17292146149062 7.64982371773087 7.04069350473501 7.24039157733072 7.53992314486406 0.159788380154459 0.164755483873861 0.163923066737279 0.175513300605907 0.163632426332268 0.166184637577293 0.162058618403334 0.165110038236173 0.164418348574422 0.157980340735410 0.163596434433667 0.159933834347097 0.163984461034024 0.171625911499946 0.155509291513791 0.157622660406827 0.16271576777076 0.167939773834823 0.159592764963413 3 3|0 -|/ 4676237 4676881 4676576 4676125 4677665 - gene protein_coding_gene FALSE TRUE AT3G14110.1|AT3G14110.2 FLU (FLUORESCENT IN BLUE LIGHT); binding Encodes a novel coiled-coil, TPR domain containing protein that is localized to the chloroplast membrane and is involved in chlorophyll biosynthesis. Mutants accumulate protochlorophyllide, an intermediate in the chlorophyll biosynthesis pathway, in dark and release singlet oxygen in plastids in a controlled and non-invasive manner upon a dark/light shift. similar to chloroplast FLU-like protein [Gymnadenia conopsea] (GB:ABI20691.1); similar to Os01g0510600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043167.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.0116421258378061 0.129783120154529 0.899792570188518 1 0.780258771695306 14.1820132944416 0.0116421258378061 0.085343143352054
AT3G03880_at 5.30644727737661 5.23975454706772 5.50756503899976 5.18971081148462 6.24381061956048 4.90098754723323 5.64533799849094 5.32681125421453 5.3042141736278 5.23188974434016 5.23835740836159 5.38600137280007 5.43637001382287 5.47008374321434 4.74473762917912 5.38997779981361 5.0977649434627 5.08842647964559 5.54048590941447 0.220238928870998 0.217940457474388 0.22746754267781 0.215672920661742 0.220529935721631 0.24238186320826 0.216515588973716 0.214688511462547 0.232490333477288 0.2182250524476 0.215522883393731 0.214688511462547 0.218373893947376 0.215387206368160 0.218136871006244 0.217593783972012 0.230557393773851 0.237095416978528 0.221357964063649 3 3 + 998203 998804 998450.2 997804 999268 + gene protein_coding_gene FALSE TRUE AT3G03880.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G55340.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAV67822.1); similar to Os03g0807200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051641.1); contains InterPro domain Protein of unknown function DUF1639; (InterPro:IPR012438) -0.0232338084872925 -0.127422197270399 0.901604370234702 1 0.779940749822582 10.7152172365943 -0.0232338084872925 0.245354185349544
AT4G38770_at 12.2208080734508 12.4798535057469 11.3316533985245 11.6804251814038 12.1484660755932 11.9584233662459 12.8317430594083 13.0380947162624 12.9032812823523 12.9558389403240 13.9247182093499 14.0943420141161 13.9918869675379 13.7532411895419 14.0539448532687 13.5542286685700 13.2792040418809 13.9420076666057 12.9548366246219 0.0739424088520477 0.0733557809376598 0.0793175568493957 0.079643322781694 0.0712344139647201 0.0846838654238821 0.0709009040661563 0.0734652273834032 0.0764191239716112 0.0730683307770578 0.0735785096272635 0.0723248724129388 0.0735179922059292 0.0715236648616863 0.0724662628936842 0.0709009040661563 0.0739844192755605 0.0722491613083228 0.0728200676289439 4 4 - 18097028 18097540 18097342.818 18096803 18098558 - gene protein_coding_gene FALSE TRUE AT4G38770.1 PRP4 (PROLINE-RICH PROTEIN 4) Encodes one of four proline-rich proteins in Arabidopsis which are predicted to localize to the cell wall. Transcripts are most abundant in aerial organs of the plant. similar to ATPRP2 (PROLINE-RICH PROTEIN 2) [Arabidopsis thaliana] (TAIR:AT2G21140.1); similar to proline-rich protein [Solanum tuberosum] (GB:CAA04449.1); contains InterPro domain Protein of unknown function DUF1210; (InterPro:IPR010616) 0.0116641261587898 0.127322139009728 0.901681169650022 1 0.779927400166627 25.5922745806420 0.0116641261587898 0.0894951202867065
AT4G27390_at 7.69657415818928 7.74961681729893 7.43365219885654 7.74723755066157 8.75362508091716 7.91372637332739 8.62752290529238 8.02518706059287 7.36922645210011 7.64741857597664 7.2095188788975 7.38629338089613 7.43124782444077 7.79260138199615 6.57825628466572 7.72619814530805 7.72781436454662 7.265708042231 7.07399074732685 0.207660053333890 0.202866145690196 0.210471534368510 0.209169530131312 0.199810673887019 0.205565749865021 0.200799121735365 0.206688013358312 0.214133202917564 0.202924121057776 0.215520943874586 0.205144973114697 0.203436654913283 0.203151888036752 0.212616323392001 0.206829909610823 0.208117065813703 0.211628613160746 0.204821530353145 4 4|0 -|/ 13703451 13704355 13704066 13703145 13704699 - gene protein_coding_gene FALSE TRUE AT4G27390.1 similar to Os05g0502500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055975.1); similar to hypothetical protein CYB_2286 [Synechococcus sp. JA-2-3B'a(2-13)] (GB:YP_478490.1) -0.0182527024989116 -0.125193975696323 0.903314892417449 1 0.77964593667862 15.3700177913123 -0.0182527024989116 0.187138244505880
AT4G08280_at 8.43830811883825 8.73078164331055 8.65867600182948 8.56715023975516 8.9424296715118 8.73111969437451 8.63564172784182 8.83285750758585 8.55344992946318 8.25894275978334 8.43909355984886 8.35826291206452 8.4277566657297 8.5486616646265 8.5864594475193 8.46459339374543 7.8170417972086 8.28391537365363 8.54439494023933 0.155542267793221 0.156934546506459 0.157772612813106 0.156822043297435 0.154247362980862 0.156657269022688 0.151292919136971 0.156571383725353 0.174874629945452 0.155887278196772 0.163745544949782 0.155752972764376 0.157352955410188 0.162159163687429 0.152502165278334 0.154497292290939 0.169087663505072 0.164707309808001 0.157364531952298 4 4|0 +|/ 5230344 5231167 5230571.7 5230323 5232193 + gene protein_coding_gene FALSE TRUE AT4G08280.1 similar to Os02g0767900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048234.1); similar to hypothetical protein syc2471_c [Synechococcus elongatus PCC 6301] (GB:YP_173181.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutaredoxin 2; (InterPro:IPR008554); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0105463944443815 -0.125080852528947 0.903401747129665 1 0.779631107665541 17.1011133981117 -0.0105463944443815 0.0729017697646638
AT4G30993_at 9.53194160851384 9.57747349942979 9.8083960345192 9.78772129315516 10.2033372583390 9.46680718099995 10.4596691075176 10.2399670706756 9.48884057646506 10.3425147327583 10.2234656185829 10.1233256456000 10.3363756829227 10.2643224311117 10.0372671079701 10.3161488244268 9.91563467400043 10.1051858549699 10.1723708898732 0.110580395554133 0.106292586308554 0.11396471833168 0.119004270112722 0.106651125772227 0.114615887347244 0.107275413888733 0.111524369652321 0.117095419206832 0.106292586308554 0.106504464037937 0.107206697880312 0.106292586308554 0.106292586308554 0.110074186455308 0.106292586308554 0.127714722674155 0.116735484174395 0.106292586308554 4 0|4 /|+ 15098941 15099556 15099341.5 15098073 15100564 + gene protein_coding_gene FALSE TRUE AT4G30993.1|AT4G30993.2 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72545.1); contains domain no description (G3D.3.60.21.10)|similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD72545.1); contains domain Metallo-dependent phosphatases (SSF56300); contains domain no description (G3D.3.60.21.10) 0.0141381419008242 0.123812906193983 0.904375355890135 1 0.779465809579626 19.9676430298006 0.0141381419008242 0.133290982061078
AT1G64350_at 5.87504378986303 5.93173183846775 5.80570576849729 6.24921093334749 6.74134813565748 5.92055367019865 6.29844165907531 5.60571632367489 5.26142274973022 5.09275685401709 5.05578292455765 5.21753256970343 4.73135479539394 5.08357202911163 4.59936842231721 5.13893717036049 4.94772206214489 4.64231588205113 5.06702302668984 0.214910538277701 0.213208371124947 0.221285721784566 0.211028389262874 0.211319056345920 0.215054222056843 0.208428003792641 0.208428003792641 0.214705571428950 0.218112751990596 0.211631423084304 0.216774972263267 0.211795232469317 0.218209664479780 0.212156866553263 0.211947227988234 0.214339583902975 0.210910768255148 0.215006880113119 1 1|0 +|/ 23885788 23886698 23886259.75 23885175 23886960 + gene protein_coding_gene FALSE TRUE AT1G64350.1 SEH1H (SEH1H); nucleotide binding seh1-like protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G30050.1); similar to SEH1-like (S. cerevisiae [Xenopus tropicalis] (GB:NP_001011152.1); similar to Os01g0620100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043597.1); similar to MGC115524 protein [Xenopus laevis] (GB:AAH99027.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0190717896488222 0.123411935377669 0.904683282061089 1 0.779413885454861 11.0872060692314 0.0190717896488222 0.201330512982373
AT3G05090_at 8.83032761357725 8.86472397812085 8.90486196175874 9.14689672959664 8.87120115010501 8.71296173972958 8.45251531025757 8.73714925447524 8.5640321048381 8.20844749062342 7.89984695821396 8.26404540071337 8.18239335714867 8.3883445435076 7.82061165648852 8.51228502974145 8.27538502721438 8.3559203246726 8.36638963829116 0.1284303962155 0.128513687851097 0.136388781154018 0.131547006013544 0.129499286459309 0.133944702825149 0.131657411401777 0.137758852061651 0.139812573952092 0.134291946561094 0.136943891717508 0.128961339251244 0.131683997262535 0.126614856143496 0.139984710023227 0.126614856143496 0.136833714725194 0.138551679411643 0.127412153308914 3 3|0 -|/ 1418799 1419448 1419130.222 1417899 1423670 - gene protein_coding_gene FALSE TRUE AT3G05090.1|AT3G05090.2 transducin family protein / WD-40 repeat family protein similar to coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana] (TAIR:AT1G62020.1); similar to Os12g0165000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066238.1); similar to WD repeat domain 48, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95885.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680) 0.0102661577423895 0.123204671767600 0.904842457154021 1 0.779387111421018 17.1110682747677 0.0102661577423895 0.0704696210631667
AT3G17430_at 4.52411283020288 5.03162188167146 4.76443984582313 4.73802668391582 4.93717439802027 4.41747972076034 5.49302500418282 5.49532046967872 4.9084235124826 4.93333302345564 5.65348775181028 5.65361205725106 5.49823839101401 5.38737287306703 5.66231031692248 5.29103087775659 4.98430886370804 5.48231287011838 5.16653680236475 0.186022201854076 0.182136863768099 0.189957823689318 0.185508403226919 0.194444141271947 0.188461612510257 0.183742688758438 0.190902690065818 0.196823897080148 0.182136863768099 0.186126184887917 0.185879804739121 0.182136863768099 0.186433965309636 0.185559616959047 0.182136863768099 0.192849393199391 0.183835223097325 0.187761195312793 3 3|0 +|/ 5968005 5968934 5968497.25 5965929 5969239 + gene protein_coding_gene FALSE TRUE AT3G17430.1 phosphate translocator-related similar to phosphate translocator-related [Arabidopsis thaliana] (TAIR:AT1G48230.1); similar to expressed protein (with alternative splicing) [Oryza sativa (japonica cultivar-group)] (GB:AAS07264.1); contains InterPro domain Protein of unknown function DUF250; (InterPro:IPR004853) 0.0135399599004513 0.123020872666665 0.904983615683028 1 0.779363406006072 10.1523244524354 0.0135399599004513 0.125789543676404
AT2G37570_at 8.3004578716023 8.77792526763519 8.48828181205821 8.72524462115067 8.8554761602465 8.9264423824754 8.7135006008634 8.97439189318233 8.18348230567832 8.08318976251444 8.0660217403555 8.32357164709664 8.5420121031829 8.29289379831267 7.5639205903475 8.46807740970025 7.87055013327173 8.10200997896976 8.29364149712073 0.168352308913008 0.166875583729253 0.173396205743159 0.178284863900018 0.164670390107060 0.171949960983278 0.164670390107060 0.166734269671097 0.184064579182200 0.172516847709937 0.167980747981033 0.165941687845862 0.170031661365206 0.180771424214644 0.183025565477321 0.173116190713128 0.211232938615145 0.176818226400056 0.173128920053095 2 2 - 15768557 15769109 15768822.091 15768378 15770461 - gene protein_coding_gene FALSE TRUE AT2G37570.1|AT2G37570.2 SLT1 (SODIUM- AND LITHIUM-TOLERANT 1) encodes a protein that can complement the salt-sensitive phenotype of a calcineurin (CaN)-deficient yeast mutant. This gene occurs in a single-copy and is 75% identical to tobacco SLT1 gene. similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02480.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G12570.4); similar to Os01g0151100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042037.1); similar to SLT1 protein [Nicotiana tabacum] (GB:AAG39002.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978)|similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G02480.1); similar to SLT1 protein [Nicotiana tabacum] (GB:AAG39002.1); contains InterPro domain HSP20-like chaperone; (InterPro:IPR008978) 0.0120766611893373 0.122790242356456 0.905160745832711 1 0.779333710429156 16.8904167579480 0.0120766611893373 0.103432118693555
AT4G30620_at 6.23924929321453 6.64244053400509 5.39134440092125 5.66960361210263 7.00134605221641 6.27529388509162 6.86782034091493 6.33769042955969 6.32400255793837 5.98727954105071 6.71642234116212 7.3504702300454 5.91025654292642 6.22301200104049 7.31820249002178 6.38928230637023 6.3811722162064 6.16673791957723 6.15003180939298 0.215213944791393 0.20526947131709 0.204409380968566 0.227882854279224 0.201794729637176 0.204048707620169 0.201794729637176 0.205664052086889 0.208347598100301 0.213271195836083 0.203179412020894 0.207350524238703 0.208404956913257 0.203874732835246 0.220258604418621 0.206720776330567 0.222864816835528 0.210635044694336 0.201794729637176 4 4|0 -|/ 14948736 14950017 14949352 14948592 14950078 - gene protein_coding_gene FALSE TRUE AT4G30620.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G24020.1); similar to Conserved hypothetical protein 103 [Medicago truncatula] (GB:ABE78786.1); contains InterPro domain Conserved hypothetical protein 103; (InterPro:IPR004401) -0.0171149793579231 -0.12247621121631 0.905401939022632 1 0.77929336555179 12.6584564728597 -0.0171149793579231 0.177174581627198
AT3G63420_at 7.97635952896487 8.26369732589395 7.49581686449276 7.788886358639 7.76772939517895 7.78934464958431 6.37258886233112 6.86110711204376 6.97767725539387 6.89236437710577 6.97493807813616 6.95945401835768 6.37638686577814 6.20916847621651 6.6973152661023 6.80240912803474 6.58204135619412 5.8276794785631 6.74226211809086 0.232614801956366 0.226040978969395 0.227548628247253 0.226507415780075 0.226131576691409 0.227203387395259 0.229182938332904 0.226800225680275 0.241799034734666 0.226430932112329 0.229271760951041 0.224999059043101 0.225650452353808 0.237626942434075 0.231387187090216 0.227779382227277 0.227024987358418 0.241278543831435 0.224999059043101 3 3|0 +|/ 23428384 23429354 23428848.333 23428247 23429673 + gene protein_coding_gene FALSE TRUE AT3G63420.1|AT3G63420.2 AGG1 (ARABIDOPSIS GGAMMA-SUBUNIT 1) heterotrimeric G protein gamma-subunit (AGG1) mRNA, similar to AGG2 (G-PROTEIN GAMMA SUBUNIT 2) [Arabidopsis thaliana] (TAIR:AT3G22942.1); similar to Os03g0635100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050720.1); similar to Os02g0137800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045833.1) 0.0124561381123340 0.122194718133969 0.905618150002875 1 0.779257288451012 14.2516622622843 0.0124561381123340 0.110480195138935
AT3G60750_at 12.7762001129234 12.7181330946757 12.7813960132568 12.8033090273696 12.6671495200084 12.5795921694468 13.1590382022210 13.2908185728548 12.9664911942883 13.1779576751076 13.2444780884937 13.4523562092277 13.3417499072753 13.3653906928427 13.3548347051399 13.4274987320164 13.2113482534261 13.3702159480565 13.0072359618561 0.0758081180021754 0.0748373007074574 0.0774173454352657 0.0767310682409244 0.0742321210884657 0.0814028701041347 0.0773648183434805 0.0757482508126084 0.0836010683362081 0.0746817510306688 0.0750723831712467 0.0742321210884657 0.0748164888590668 0.0766625020621806 0.0768938853086402 0.0742321210884657 0.0793866998287535 0.074271346099904 0.0745153037271061 3 3 + 22467223 22467774 22467417.273 22464694 22468127 + gene protein_coding_gene FALSE TRUE AT3G60750.1 transketolase, putative similar to transketolase, putative [Arabidopsis thaliana] (TAIR:AT2G45290.1); similar to transketolase 1 [Capsicum annuum] (GB:CAA75777.1); similar to Transketolase, chloroplast precursor (TK) (GB:Q43848); similar to Transketolase, C-terminal-like [Medicago truncatula] (GB:ABE91345.1); contains InterPro domain Transketolase, C-terminal; (InterPro:IPR005476); contains InterPro domain Transketolase, C-terminal-like; (InterPro:IPR009014); contains InterPro domain Transketolase, central region; (InterPro:IPR005475); contains InterPro domain Bacterial transketolase; (InterPro:IPR005478); contains InterPro domain Transketolase, N-terminal; (InterPro:IPR005474) 0.0086183217470408 0.12200077829971 0.905767117367516 1 0.77923248058613 26.0452274278331 0.0086183217470408 0.0294113080998013
AT1G07960_at 6.1880610402427 6.79418709970123 6.43783548338433 6.58078365062355 7.21337101615496 6.39958420468715 6.65951283124729 6.76750236747983 5.48097902458041 6.30341020915706 5.8097538133082 5.89087347747066 5.88362313532265 5.94909251899333 5.83563817509059 6.20507947756421 5.67885426789572 5.47498251854396 6.00615507685248 0.225629558952989 0.210315041179378 0.219389985030581 0.220574967903751 0.213138288657255 0.228442039335424 0.218219110078244 0.220183237897003 0.245102306680962 0.210315041179378 0.218128681769651 0.213854104857689 0.220847572440093 0.21889003530494 0.216501830410335 0.216085327613045 0.218586946194898 0.229271447568322 0.216795907276479 1 1 + 2467695 2468751 2468238 2467158 2469151 + gene protein_coding_gene FALSE TRUE AT1G07960.1|AT1G07960.2|AT1G07960.3 ATPDIL5-1 (PDI-LIKE 5-1); thiol-disulfide exchange intermediate Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. similar to ATPDIL2-1/MEE30/UNE5 (PDI-LIKE 2-1, maternal effect embryo arrest 30, unfertilized embryo sac 5) [Arabidopsis thaliana] (TAIR:AT2G47470.4); similar to Os03g0287900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049781.1); similar to protein disulfide isomerase [Zea mays] (GB:AAX09967.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin-related; (InterPro:IPR006662); contains InterPro domain Thioredoxin domain 2; (InterPro:IPR006663); contains InterPro domain Thioredoxin domain; (InterPro:IPR013766); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335) -0.0168082548974560 -0.119690349355469 0.907542084925868 1 0.778939961203956 12.5156890166336 -0.0168082548974560 0.17831632611164
AT3G10330_at 5.30656016706696 5.59988637451949 5.1573581781075 4.97096512547636 5.9653389431917 4.75939266291949 5.84856181577624 5.25543331705947 4.46546305336015 4.68038672034048 5.33353613159022 5.69881035647656 4.9246479762155 5.11850185222336 5.48653783648068 4.92571759789352 4.22677852598895 4.85300890625517 5.07339030431774 0.215505331163125 0.207146474755572 0.210569140582495 0.213015760476466 0.20461990481274 0.224807423559727 0.207970525853717 0.20461990481274 0.220386569361012 0.218415660024180 0.20461990481274 0.206004368038544 0.205386829570114 0.211615854495278 0.213936953015780 0.208061750896099 0.229708220342797 0.21533539720341 0.215774028554864 3 0|3 /|+ 3200838 3201577 3201333.75 3199775 3201860 + gene protein_coding_gene FALSE TRUE AT3G10330.1 transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2) Identical to Transcription initiation factor IIB-2 (General transcription factor TFIIB-2) (AtTFIIB2) (TFIIB2) [Arabidopsis Thaliana] (GB:Q9SS44;GB:P92972); similar to TFIIB (TRANSCRIPTION FACTOR II B), RNA polymerase II transcription factor [Arabidopsis thaliana] (TAIR:AT2G41630.1); similar to Transcription initiation factor IIB (General transcription factor TFIIB) (GB:P48513); contains InterPro domain Transcription factor TFIIB related; (InterPro:IPR000812); contains InterPro domain Transcription factor TFIIB, cyclin-related; (InterPro:IPR013150); contains InterPro domain Cyclin-like; (InterPro:IPR011028); contains InterPro domain Zinc finger, TFIIB-type; (InterPro:IPR013137); contains InterPro domain Cyclin-related; (InterPro:IPR013763); contains InterPro domain Cyclin; (InterPro:IPR006670) 0.0209245070179614 0.116862162354603 0.909715561243117 1 0.778589475219118 10.2632816182963 0.0209245070179614 0.240221471873322
AT2G46540_at 9.2162818971611 9.28296827399747 9.07901705857615 9.33122494804485 9.3826686464109 8.87679481901121 9.4058794157358 9.4232511323819 9.21302735246126 9.24875494522767 9.23678521630593 9.54236226403268 8.98881965265574 9.3137220891491 9.41187341345947 9.31484382635095 9.13709246616554 9.40145598309672 8.99130927034443 0.125214496987681 0.120089293024122 0.126240994627361 0.127537086345462 0.128457330542752 0.129756300760184 0.127450632502266 0.124895717928526 0.127431339725174 0.126456129037468 0.129872375913335 0.123098578195026 0.120089293024122 0.132565461573157 0.122947452360279 0.124613336840564 0.133380458755004 0.124919748210231 0.122902678837869 2 2|0 -|/ 19117770 19118709 19118351.778 19117544 19118841 - gene protein_coding_gene FALSE TRUE AT2G46540.1 similar to fiber protein Fb11 [Gossypium barbadense] (GB:AAN77150.1) -0.0111649852920310 -0.116383961175125 0.910083141179493 1 0.7785310390891 18.4719607172048 -0.0111649852920310 0.0985448684129282
AT2G29420_at 7.85041188406881 8.16051390959734 7.24782123441789 7.67052020626676 8.18079518554584 7.27715471095147 7.89411461675304 8.09366175009466 5.92050830248149 6.80660711411931 6.6106675453834 7.22918003024347 7.16754974457582 6.80024727581468 6.45865664057974 7.5488484534927 6.44686568329044 6.48973960667411 6.68790480507226 0.219041334288077 0.216284503047218 0.225909015504611 0.215373478422959 0.218440233976987 0.21639651232087 0.221347065772405 0.217490637481408 0.242614232325378 0.219082806027530 0.211236427136093 0.213005946225843 0.211236427136093 0.223670883518159 0.222342782559024 0.211236427136093 0.223977177510449 0.219828393491506 0.211236427136093 2 2 - 12625237 12625831 12625538.273 12625013 12625976 - gene protein_coding_gene FALSE TRUE AT2G29420.1 ATGSTU7 (GLUTATHIONE S-TRANSFERASE 25); glutathione transferase Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). Induced by Salicylic acid. Independent of NPR1 for their induction by salicylic acid. similar to ATGSTU4 (GLUTATHIONE S-TRANSFERASE 22), glutathione transferase [Arabidopsis thaliana] (TAIR:AT2G29460.1); similar to glutathione S-transferase GST 7 [Glycine max] (GB:AAG34797.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Glutathione S-transferase, N-terminal; (InterPro:IPR004045); contains InterPro domain Glutathione S-transferase, C-terminal-like; (InterPro:IPR010987); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione S-transferase, C-terminal; (InterPro:IPR004046) -0.0166533702752651 -0.115715449284450 0.910597045953923 1 0.778449747267664 14.4546955770775 -0.0166533702752651 0.184059141926594
AT3G06440_at 5.62949665585983 6.435611876382 5.15898286437379 5.50738576378993 6.79902961431135 6.45265798805808 6.17632197115678 5.69862086043879 5.4695852077021 5.81045558151432 5.804888138932 5.93914416842774 5.9331845712421 5.90939181922399 6.08041037000801 6.12817321913579 5.8745183681746 5.97963241921341 6.47317308975862 0.243841181553247 0.239354527237162 0.252726697182516 0.247302524319846 0.241506456515931 0.245820475102643 0.237494902730597 0.252559799325836 0.284298321400294 0.243933560515931 0.237939506616449 0.241089365844761 0.245224449069515 0.238929010936903 0.250939638175726 0.236640230547278 0.239587361992126 0.244435990365782 0.246109577367698 3 3|0 -|/ 1972921 1973727 1973350.5 1972628 1975760 - gene protein_coding_gene FALSE TRUE AT3G06440.1|AT3G06440.2 galactosyltransferase family protein similar to galactosyltransferase family protein [Arabidopsis thaliana] (TAIR:AT1G26810.1); similar to Os06g0229200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057213.1); similar to Os01g0328900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042919.1); similar to putative beta-1,3-galactosyltransferase [Oryza sativa (japonica cultivar-group)] (GB:BAD34256.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Galectin, galactose-binding lectin; (InterPro:IPR001079); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Glycosyl transferase, family 31; (InterPro:IPR002659) 0.0164655706551446 0.114879987809841 0.911239352202412 1 0.778348810276616 11.9192163712728 0.0164655706551446 0.183092977952066
AT3G19240_at 7.35034353820657 7.37210893007982 6.56684931666928 7.25694145991121 7.59438809931369 6.98972235737875 6.69009835255558 7.37334402489058 7.32784079226845 6.99223201387702 7.0361186666602 7.47011505787124 7.2936491349974 7.3694862613457 6.87820497721979 7.19298499079071 7.31357873647326 7.31358387474166 6.99228554912903 0.217681738191795 0.231381303617272 0.228099287639545 0.234929517520689 0.218599605090632 0.219510652001992 0.218796527669732 0.234656149163739 0.232867338500447 0.221071415736136 0.211654463745684 0.215060114430038 0.210264707502351 0.217633377091298 0.227172667700994 0.216098280282499 0.230096723724022 0.219252876861488 0.220527743045997 3 3 + 6665803 6666404 6666161.636 6664256 6666564 + gene protein_coding_gene FALSE TRUE AT3G19240.1 similar to dem protein-related / defective embryo and meristems protein-related [Arabidopsis thaliana] (TAIR:AT4G33400.1); similar to DEM2 [Lycopersicon esculentum] (GB:AAQ90244.1); similar to Quinoprotein amine dehydrogenase, beta chain-like [Medicago truncatula] (GB:ABE80529.1); similar to DEM2 [Lycopersicon esculentum] (GB:AAQ90245.1); contains InterPro domain Quinonprotein alcohol dehydrogenase-like; (InterPro:IPR011047) 0.0174236788197153 0.114270084185698 0.911708292164815 1 0.778275584574898 14.3180168420110 0.0174236788197153 0.198005559270923
AT4G12340_at 7.96057003861484 8.10589300718317 7.61956476515234 7.90073195898401 8.14109083923931 7.87361400616407 7.708383700645 7.74070185204456 7.53203181642711 7.99415157413632 8.15386282295891 7.95997503604252 7.89708462266016 7.62410157658372 8.25244826157068 7.97482018565263 7.29740919092992 7.55755126181607 7.9498968620679 0.193340311916765 0.186294026805132 0.210677548434975 0.208172635544743 0.186313776349420 0.205535853869607 0.197150736105554 0.194937497793266 0.204214193196119 0.20259750689825 0.192399910724969 0.192608620871100 0.202093378415810 0.200135010313063 0.194943622853067 0.186294026805132 0.210560023462223 0.195580436635960 0.191762632082479 4 4 - 7321506 7321974 7321701.273 7321276 7322475 - gene protein_coding_gene FALSE TRUE AT4G12340.1 similar to Os05g0103500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054395.1); contains InterPro domain CHCH; (InterPro:IPR010625) 0.00957988916471075 0.114157691237070 0.911794712341433 1 0.778262132947124 15.7138271229970 0.00957988916471075 0.0719295782826847
AT1G57680_at 8.71516868464804 9.21739401749452 8.88245445909838 9.02866785497877 9.63809045193513 8.785157680104 9.649438428005 9.54518171271053 9.43953837524712 9.29968162645506 10.2559974202372 9.74710586735013 9.91239302539423 10.0460634993483 9.43065470686462 9.34630065116617 8.87776595236084 9.43777508949612 9.65585474786684 0.134730776989367 0.133467257929495 0.140846353219529 0.139128372453186 0.130714344002014 0.143923830655130 0.130715927013992 0.130714344002014 0.135934982288849 0.130714344002014 0.130714344002014 0.130714344002014 0.130714344002014 0.130714344002014 0.134327072466952 0.130714344002014 0.146581589037256 0.135210537366361 0.130714344002014 1 1 - 21366455 21366908 21366716.818 21366153 21368393 - gene protein_coding_gene FALSE TRUE AT1G57680.1|AT1G57680.2 similar to AMP-dependent synthetase and ligase [Medicago truncatula] (GB:ABE91856.1) -0.0157354945906256 -0.114123623442882 0.911820907688506 1 0.778258058185917 18.7310851326469 -0.0157354945906256 0.174087522942578
AT1G73540_at 5.37791039654722 5.63700031181263 5.65104275890532 5.2823045144798 6.11106205499691 6.27961917113371 5.77090522075734 5.65462293775551 5.53703186026831 4.99577069475079 5.3307384794575 5.25770007855638 5.05390888012769 5.21907481640304 4.72875922265526 5.33078304619223 5.46517751154889 4.5905395282337 5.43470232132656 0.196853803236722 0.209785489135701 0.196868047974998 0.199833064197675 0.194666352561807 0.204447237877565 0.195298467620597 0.202721786885089 0.200980322571089 0.206341967947456 0.198939958293353 0.195644751174523 0.205068766472383 0.194015819032420 0.202640079510585 0.195566722568302 0.196917386004458 0.200750806437243 0.207435157882179 1 1 - 27649543 27650145 27649878.545 27649322 27650359 - gene protein_coding_gene FALSE TRUE AT1G73540.1 ATNUDT21 (Arabidopsis thaliana Nudix hydrolase homolog 21); hydrolase Identical to Nudix hydrolase 21, chloroplast precursor (EC 3.6.1.-) (AtNUDT21) (NUDT21) [Arabidopsis Thaliana] (GB:Q8VY81;GB:Q9FX46); similar to ATNUDT4 (Arabidopsis thaliana Nudix hydrolase homolog 4), hydrolase [Arabidopsis thaliana] (TAIR:AT1G18300.1); similar to Os02g0734300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048038.1); similar to Os06g0255400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057309.1); similar to MutT-like protein [Cucumis sativus] (GB:AAP57672.1); contains InterPro domain NUDIX hydrolase; (InterPro:IPR000086) 0.0102404890545208 0.113973931376027 0.911936009991542 1 0.77824016826804 10.9428518312212 0.0102404890545208 0.0856626787551528
AT3G52850_at 9.75810348184909 9.8154342907943 9.9300137776411 9.93334856286275 10.1240946420582 9.65704570285825 9.9444380414098 9.8180531767554 9.52262575765605 9.71860659866335 9.20261026347421 9.25862141822876 9.48196195144275 9.32468807459928 9.2122904990218 9.50358447747042 9.76140120261319 9.44416449911218 9.24711131857035 0.121874841006211 0.121083393020348 0.124998841702628 0.119517681984301 0.120079706696876 0.120573939799168 0.122320895709498 0.124962586444629 0.124430141127264 0.119036496475243 0.127726521173224 0.120080990402559 0.126306329705073 0.127412373978278 0.127474178217717 0.122695483226780 0.121148311979395 0.121867268181962 0.121487455451784 3 3|0 +|/ 19601008 19602622 19601905 19598799 19602925 + gene protein_coding_gene FALSE TRUE AT3G52850.1 ATELP1 (VACUOLAR SORTING RECEPTOR HOMOLOG) Encodes the Vacuolar Sorting Receptor-1 (VSR-1)/Epidermal Growth Factor Receptor-like protein1(VSR-1/ATELP1). Binds vacuolar targeting signals. Involved in sorting seed storage proteins into vacuoles. Identical to Vacuolar sorting receptor 1 precursor (AtVSR1) (Epidermal growth factor receptor-like protein 1) (AtELP1) (AtELP) (BP80-like protein b) (AtBP80b) (Spot 3 protein) (VSR1) [Arabidopsis Thaliana] (GB:P93026;GB:P94037;GB:Q94AC0); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G14740.2); similar to vacuolar sorting receptor, putative [Arabidopsis thaliana] (TAIR:AT2G30290.1); similar to VSR-2 (Vacuolar sorting receptor 2), calcium ion binding / peptidase [Arabidopsis thaliana] (TAIR:AT2G14720.2); similar to vacuolar sorting receptor protein PV72-like protein [Solanum tuberosum] (GB:ABC01915.1); similar to vacuolar sorting receptor protein homolog PV72 - cucurbit (GB:T00044); similar to vacuolar sorting receptor [Vigna mungo] (GB:BAB64531.1); contains InterPro domain Protease-associated PA; (InterPro:IPR003137); contains InterPro domain EGF-like region; (InterPro:IPR013032); contains InterPro domain EGF-like calcium-binding; (InterPro:IPR001881); contains InterPro domain Aspartic acid and asparagine hydroxylation site; (InterPro:IPR000152) -0.0101654181991684 -0.11390800669697 0.911986701967066 1 0.778232296936436 19.3199563877996 -0.0101654181991684 0.0843196819091039
AT1G67960_at 5.76562188628776 5.52118206997845 5.7377913910608 5.65307582854359 6.29930035647946 5.49043475934796 6.14932666495827 5.3625943584928 5.3934204990023 5.40177210409877 5.44980377303589 5.31849366397601 5.53779891280962 5.34002737845677 5.16680740610462 5.55583776645519 4.9976072443516 5.24986506315218 5.36724832357374 0.190617299718605 0.189314562789931 0.186297559931445 0.184980743141104 0.183250792310327 0.190492335922965 0.183158421226527 0.185238690720056 0.200245108839860 0.200682366957979 0.187824557587173 0.184846466423025 0.184667783736594 0.198195217346530 0.186403275246049 0.187008077415798 0.199473230407671 0.196727346480926 0.185454258986064 1 1|0 -|/ 25484552 25485534 25485000.429 25484315 25487925 - gene protein_coding_gene FALSE TRUE AT1G67960.1 similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58202.1); similar to Os03g0715400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051076.1); contains InterPro domain Protein of unknown function DUF747, CMV receptor; (InterPro:IPR008010) 0.0175095905398814 0.113757231587732 0.91210264024132 1 0.77821431162306 11.1046711443608 0.0175095905398814 0.200335633127163
AT2G35680_at 9.83370255680876 9.95217120373315 10.2271456428716 10.1694252431648 10.4285619303965 10.1637480344478 9.98574726486522 10.0324590738926 10.2616171456542 10.2060781431101 9.96191361498938 9.58777548465957 10.0597541810041 10.1626414377571 9.3277840503 10.2424541055572 10.2534800286094 9.9513232607876 10.1991549964999 0.088504596528668 0.0855619207951863 0.0864014622710608 0.0893412055717895 0.0890154327293842 0.0921614847030922 0.091916975211007 0.0906360461155224 0.0954824657551248 0.091513479555422 0.0895132839597192 0.0895167770413992 0.0884248339647098 0.089482665385248 0.0950279974624836 0.0873736582972657 0.0903905145710957 0.08717079867108 0.0878049988727627 2 2|0 -|/ 15004090 15004755 15004408.5 15003792 15006164 - gene protein_coding_gene FALSE TRUE AT2G35680.1 dual specificity protein phosphatase family protein similar to dual specificity protein phosphatase family protein [Arabidopsis thaliana] (TAIR:AT5G56610.1); similar to Dual specificity phosphatase, catalytic domain, putative [Medicago truncatula] (GB:ABE83693.1); contains InterPro domain Dual specificity protein phosphatase; (InterPro:IPR000340); contains InterPro domain Tyrosine specific protein phosphatase and dual specificity protein phosphatase; (InterPro:IPR000387) 0.00865376496595749 0.113072994927410 0.912628810783189 1 0.778132990363695 20.1819572182123 0.00865376496595749 0.0518225352294291
AT4G05400_at 5.45088567160662 5.4958485048012 5.10098005640244 4.9733825654021 5.35100880957985 5.00527890928634 5.74563226051156 5.27416969958872 4.35898044887855 4.5894463776455 4.63895977694288 5.0021594380746 4.58254072922162 5.01755090805072 5.4916108772131 4.8346762712342 4.51567445524302 4.52922649444145 4.44552745038350 0.230426827822353 0.221576496295473 0.230949738749859 0.223133178524119 0.229831665047441 0.231476956090294 0.229146387679553 0.227077788876360 0.229143236397775 0.229501648897913 0.228034509362535 0.223928141840202 0.223008836511240 0.231607823211762 0.221382332269119 0.221382332269119 0.237884490818238 0.221382332269119 0.222363469555317 4 4 + 2741527 2741921 2741754.182 2741157 2742946 + gene protein_coding_gene FALSE TRUE AT4G05400.1|AT4G05400.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT4G21140.1); similar to Os01g0511200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043171.1) -0.0110365028962465 -0.111976713609279 0.913471933893582 1 0.778003717217701 9.94524895686662 -0.0110365028962465 0.103848499846913
AT1G65230_at 10.3898582724405 10.4309944229413 10.3722918577373 10.2205561765401 10.4585638387931 10.4880520834620 10.9342154526627 11.2350818889672 10.6295000291840 10.9256477956642 11.3392318006501 11.2022418317949 11.2821951857406 11.3182789608911 10.9963040567227 11.5767611428417 11.0707589083684 11.1290368208764 11.0227523259602 0.0830778533089809 0.0819651569773334 0.0918416736411777 0.0869543558848158 0.0820691538386483 0.0842301000750083 0.0816588197288028 0.0826681605085584 0.0872884442143234 0.0855941569604041 0.083222124370952 0.0827193071940924 0.0816588197288028 0.0816588197288028 0.0840644792380169 0.0816588197288028 0.0838895216945714 0.087646773099154 0.086295358589388 1 1 + 24233315 24234205 24233747.455 24232811 24234565 + gene protein_coding_gene FALSE TRUE AT1G65230.1 similar to hypothetical protein MtrDRAFT_AC148171g2v1 [Medicago truncatula] (GB:ABE89789.1) 0.00868975904825398 0.11005693779881 0.914948664383086 1 0.777780362248943 21.6155273185706 0.00868975904825398 0.0589672356122361
AT2G37660_at 11.0950696159466 10.9313411478688 10.5720049768336 10.4871527932807 10.9468562899048 10.5897987789035 11.0735506008421 10.8525491056285 10.9850011411673 10.9426870612046 11.2482260982715 11.6217066026165 11.0002427323848 11.1548673031188 11.7626047990088 11.0559646656003 11.0573506209045 11.0306458488658 10.7218062054484 0.0877289925807642 0.0854135152833191 0.0954765609518937 0.0916238161426291 0.0864311526973233 0.092009256966164 0.08570524821719 0.0891658302408861 0.0944729195660658 0.0887130691173851 0.0883034673651148 0.0854135152833191 0.0855528448120905 0.0861645269417286 0.0885827992028817 0.0854135152833191 0.0925036783053055 0.0905450984301907 0.0894814293738166 2 2|0 -|/ 15802569 15803560 15803172 15802291 15804137 - gene protein_coding_gene FALSE TRUE AT2G37660.1 catalytic/ coenzyme binding Identical to Protein At2g37660, chloroplast precursor [Arabidopsis Thaliana] (GB:O80934;GB:Q94B61); similar to catalytic/ coenzyme binding [Arabidopsis thaliana] (TAIR:AT5G02240.1); similar to Os05g0110300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054439.1); similar to Os03g0822200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051733.1); similar to similar to Nucleoside-diphosphate-sugar epimerases [Crocosphaera watsonii WH 8501] (GB:ZP_00516553.1); contains InterPro domain NAD-dependent epimerase/dehydratase; (InterPro:IPR001509) 0.00955593669938315 0.109771947633961 0.91516791446678 1 0.777747533499601 21.8808483568777 0.00955593669938315 0.0793675236088766
AT2G26060_at 7.67584291306847 8.00717790270687 7.92701927201485 7.78559380168572 8.4117802739063 7.7803180465388 8.05689604196054 8.0375648125444 7.01549419169201 7.81614958277309 7.47774503053176 7.53499017316839 7.54297816429099 7.35092316131581 7.57447143785457 7.6897166085729 7.57952942121623 7.17913272609 7.66516473647432 0.197779717916978 0.191260152392714 0.199416581264008 0.207654504903488 0.192238728879100 0.195399268205039 0.190300725953203 0.192925539245499 0.217042779378 0.193357637991044 0.191662812718200 0.192978715833807 0.188569450353546 0.192158435888901 0.202217603946298 0.191697610585241 0.219113719185014 0.200875760286004 0.191820056680893 2 2|0 +|/ 11110483 11112181 11111386.778 11109379 11112433 + gene protein_coding_gene FALSE TRUE AT2G26060.1|AT2G26060.2 EMB1345 (EMBRYO DEFECTIVE 1345); nucleotide binding similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT4G32990.1); similar to WD40-like [Medicago truncatula] (GB:ABE77850.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.0120285505166462 0.109253109492165 0.91556708933126 1 0.777687985080147 15.4553351383999 0.0120285505166462 0.125855160432231
AT3G62110_at 5.90302629894862 6.17385900225644 4.96055116683564 5.0876580042615 5.1838620725615 4.92519918411644 5.80923921930052 5.59471708378552 5.58263602885144 6.02006377521457 7.63414030776199 8.1675440891671 6.58545869758561 6.61829480262364 7.05392992562786 6.77499845223002 4.99971963726544 6.22848000095195 6.1216820922668 0.264103487045210 0.256173653126397 0.263658379535216 0.26565463659924 0.257547699810544 0.269976022495499 0.261991642972863 0.256602956595646 0.264432856914554 0.257495449195035 0.260669800560901 0.256508765437704 0.262815645339837 0.266864343319465 0.261641761010981 0.256173653126397 0.259946985326521 0.264686614345356 0.268836293410723 3 3 - 23008292 23008842 23008490.182 23008006 23011016 - gene protein_coding_gene FALSE TRUE AT3G62110.1 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein similar to glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] (TAIR:AT4G33440.1); similar to Os03g0833800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051812.1); similar to glycoside hydrolase family 28 protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF99735.1); contains InterPro domain Virulence factor, pectin lyase fold; (InterPro:IPR011050); contains InterPro domain Glycoside hydrolase, family 28; (InterPro:IPR000743); contains InterPro domain Pectolytic enzyme, Pectin lyase fold; (InterPro:IPR012334) 0.0094003231225459 0.108796793167408 0.915918183126453 1 0.777635844928643 11.7877380229729 0.0094003231225459 0.0778616642631188
AT2G30950_at 12.5963350770708 12.7023495757977 12.8562822576721 12.7417758389064 12.9182355776927 12.6231056105879 13.0262022374817 13.0695923221691 13.2242140055894 13.3333898801382 13.3632089319838 13.2443542510000 13.3830512161505 13.3768689702196 13.2511672825599 13.4809330874169 13.1849310960932 13.4222402530328 13.2147472230915 0.0727916073837952 0.0702647201011299 0.0760868167881167 0.0729013788653936 0.0701830437690835 0.0768136544045174 0.0706978322353312 0.0725953155941879 0.0822547309599675 0.0715718697298747 0.072022055954145 0.0712061690279173 0.0701830437690835 0.071148950742376 0.0717251418464859 0.0701830437690835 0.078788846771083 0.0722931335500117 0.0701830437690835 2 2 + 13183433 13184083 13183793 13181402 13184300 + gene protein_coding_gene FALSE TRUE AT2G30950.1 VAR2 (VARIEGATED 2); ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. similar to FTSH8 (FtsH protease 8), ATP-dependent peptidase/ ATPase/ metallopeptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G06430.1); similar to ATFTSH6/FTSH6 (FtsH protease 6), ATP-dependent peptidase/ ATPase/ metallopeptidase/ peptidase/ zinc ion binding [Arabidopsis thaliana] (TAIR:AT5G15250.1); similar to putative zinc dependent protease [Trifolium pratense] (GB:BAE71245.1); similar to chloroplast protease [Capsicum annuum] (GB:CAA09935.1); similar to FtsH-like protein Pftf precursor [Nicotiana tabacum] (GB:AAD17230.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.00856201726782446 0.108784413348212 0.915927708540023 1 0.77763443340268 26.114632190004 0.00856201726782446 0.0582593584741366
AT2G02800_at 9.52974322482682 9.6146181873131 9.41895584558705 9.55454823327576 9.52161766486418 9.2271996479867 9.3850445623463 9.3314758840505 9.06983143429708 8.71068060236828 8.81827410646616 8.9878600044169 9.09676533644926 9.10597799440689 8.8599703459895 8.99225200047788 8.69663932911128 9.00091347750211 8.89885467505374 0.120700349200057 0.117873552465516 0.125092105805165 0.114824385957484 0.116002469994776 0.126612862986183 0.119636807814917 0.121205594076502 0.123388476732253 0.122263019099040 0.117870259853312 0.117087742361971 0.116588756718596 0.117288972703657 0.115179275110960 0.116477963333364 0.121874402115255 0.120141953281879 0.119425282954543 2 2 - 796891 797732 797241.909 795514 799441 - gene protein_coding_gene FALSE TRUE AT2G02800.1|AT2G02800.2 APK2B (PROTEIN KINASE 2B); kinase Encodes protein kinase APK2b. similar to APK2A (PROTEIN KINASE 2A), kinase [Arabidopsis thaliana] (TAIR:AT1G14370.1); similar to putative protein kinase [Solanum demissum] (GB:AAT40481.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.00853461020351842 0.108211525372638 0.916368521819328 1 0.777569288868477 18.3668773120774 0.00853461020351842 0.0587215624513832
AT3G49880_at 5.07577024745173 5.26407794440386 4.79352637029542 4.72151453084379 5.66329301980544 5.56990685367631 5.92171666382067 5.91722055467078 5.02432676959147 5.16326587438206 5.33928590699058 5.94230042180801 5.52035093570974 5.57342836147829 5.52881718337656 5.58225933603881 5.44088394058447 5.49046118214338 5.34921687389694 0.212752970137763 0.213394602362268 0.226254614611406 0.222244901713515 0.213515080139908 0.222287479608737 0.214542900904448 0.212752970137763 0.218169410405506 0.214154280383036 0.226098738360529 0.212752970137763 0.212752970137763 0.216249157515115 0.223069084457756 0.217252899232208 0.228787320431361 0.224086105564364 0.216044133819870 3 3 + 18508784 18509339 18509093.727 18507234 18509698 + gene protein_coding_gene FALSE TRUE AT3G49880.1 glycosyl hydrolase family protein 43 similar to glycosyl hydrolase family protein 43 [Arabidopsis thaliana] (TAIR:AT5G67540.2); similar to Os01g0879400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044987.1); similar to Os12g0406100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066630.1); similar to Proteinase inhibitor I4, serpin [Medicago truncatula] (GB:ABE79581.1); contains InterPro domain Glycoside hydrolase, family 43; (InterPro:IPR006710) 0.00782537181394338 0.107666278926132 0.916788094467935 1 0.777507606059464 10.7314582303575 0.00782537181394338 0.0384581372412508
AT1G04850_at 8.6105831794925 8.6955845751314 8.66738942025366 8.6990148094382 8.6690027410658 8.41836643325337 8.78543780552904 8.62468455395084 8.78647616998612 8.63165134270264 8.87387228210422 8.96058584594 8.5210774114599 8.76501838099513 8.3332088505299 8.61065706239295 8.46231355935751 8.76430027562656 8.41885482882414 0.136141047706826 0.129620587890561 0.132655572884949 0.139021983701259 0.131249481725861 0.140453157669089 0.128314780769305 0.136982897962647 0.139611105591272 0.133638049971291 0.133068623900437 0.132221539152402 0.141379063835876 0.133698509570810 0.140502458117127 0.129147496868499 0.150240118931661 0.132854283939722 0.131468881977484 1 1|0 -|/ 1365314 1366093 1365775.9 1365118 1368843 - gene protein_coding_gene FALSE TRUE AT1G04850.1 ubiquitin-associated (UBA)/TS-N domain-containing protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G48690.1); similar to PUG; Zinc finger, C2H2-type; UBA-like [Medicago truncatula] (GB:ABE83604.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain PUG; (InterPro:IPR006567); contains InterPro domain Ubiquitin-associated; (InterPro:IPR000449) -0.00828870807168802 -0.107364593970153 0.91702025592654 1 0.777473610453606 17.2831112676252 -0.00828870807168802 0.0538657679074401
AT1G51550_at 5.7743174623569 5.97679036535739 6.00145401992832 5.79265446257036 6.47883687065482 6.36965087975874 5.09907068828781 5.40223903308631 5.33356046967164 5.0211168185342 4.96976414982 4.75800406152471 4.80900871982004 4.26471371485311 4.63073136890769 4.58103648468222 4.92668936032378 4.87878717964323 5.67476675933789 0.215433759214601 0.204723877506342 0.204186193168347 0.197772171680621 0.210481872369189 0.207790281620721 0.200201294600985 0.203164564552213 0.201253581234704 0.206853109879964 0.211195608359391 0.210515011843901 0.20182435300873 0.221280020323035 0.201364844505323 0.205965008366324 0.220828384885020 0.205208023468283 0.214587666637977 1 1 - 19121335 19121863 19121565.818 19120700 19122975 - gene protein_coding_gene FALSE TRUE AT1G51550.1 F-box family protein similar to LKP2 (LOV KELCH PROTEIN 2), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT2G18915.2); similar to putative F-box protein [Oryza sativa (japonica cultivar-group)] (GB:BAD01248.1); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Kelch; (InterPro:IPR011498); contains InterPro domain Galactose oxidase, central; (InterPro:IPR011043); contains InterPro domain Kelch repeat; (InterPro:IPR006652) -0.00913073247255525 -0.107119635862469 0.917208769459569 1 0.777446077125038 10.8971216706475 -0.00913073247255525 0.0751195108787194
AT1G70000_at 5.91370333131854 6.18575645176413 6.93284271361321 7.69054748972343 7.3337667858271 7.1269232770462 7.56794619050697 7.9669715260503 5.34419057803802 6.29225053132317 5.42287842447479 4.48232310102077 6.00911306552144 5.88222180613034 4.49719126267127 6.74266331267956 6.52571657587271 4.94710519218117 6.22403498276926 0.219871061885522 0.219649719738929 0.224012629825988 0.224260297161488 0.220771850065483 0.236874267518679 0.221366086358425 0.22006951351121 0.228085797724950 0.229644358482988 0.223916100455878 0.220722244822376 0.221871014230999 0.224128232737676 0.226768585081352 0.216803118985236 0.234060029561315 0.223698519625274 0.217572406689397 1 1|0 -|/ 26367373 26368053 26367632 26366941 26368362 - gene protein_coding_gene FALSE TRUE AT1G70000.1 DNA-binding family protein similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT5G47390.1); similar to MYB transcription factor MYB138 [Glycine max] (GB:ABH02859.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005); contains InterPro domain Zinc finger, CCHC-type; (InterPro:IPR001878) -0.0137073732493251 -0.106061151680038 0.918023415374552 1 0.77732782428046 12.8483790323708 -0.0137073732493251 0.159561175258642
AT1G05500_at 6.32262194487425 6.49664393391064 6.53275633483212 6.27972401036876 6.70872901175402 5.83104805750702 7.12988476706858 7.10552117384621 6.68709884083015 6.4564598378666 7.26838263813787 7.76089485602854 6.61073552977425 6.99486074732666 7.34598445681052 7.05909077939342 6.16150269111133 6.59312937814254 6.4199620584508 0.151899955095362 0.153064837078989 0.161450839055594 0.151911004212541 0.152258886620634 0.166488733630118 0.156747410170213 0.152807013576435 0.160564399867821 0.152168472529854 0.155759718928285 0.148595038308475 0.155879684603626 0.156811416815412 0.155077459273477 0.147969725552255 0.170981704265034 0.154134946895256 0.151644209760376 1 0|1 /|+ 1628172 1628878 1628456.778 1625097 1628939 + gene protein_coding_gene FALSE TRUE AT1G05500.1 C2 domain-containing protein similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G11100.1); similar to putative C2 domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD30714.1); similar to C2 [Medicago truncatula] (GB:ABE86343.1); similar to C2 [Medicago truncatula] (GB:ABE81789.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.0137727271160093 0.105886774151230 0.918157632165223 1 0.777308455331592 13.2986142610901 0.0137727271160093 0.160971207620230
AT1G54990_at 7.68738387279437 8.13379116808716 7.77004749217711 7.93318250388748 7.08352999683458 7.58201634295339 6.87076494530511 7.33027582902408 6.15239186066416 6.52897810607938 6.6919668420866 6.65016212644165 6.73263828073322 6.16360524289955 6.49274686749591 6.19180020725953 5.98586115150342 5.45787707366167 6.39049909801516 0.207158022359434 0.203571292279242 0.21004966161009 0.205668131590758 0.204372665302334 0.205318629824758 0.207171539377884 0.204276019401698 0.213275264126968 0.213409908015177 0.2077617658791 0.203571292279242 0.207828688547121 0.215332850568852 0.203571292279242 0.203571292279242 0.215771305666376 0.219625422324884 0.211554874857179 1 1|0 +|/ 20516055 20517106 20516602.8 20515186 20517348 + gene protein_coding_gene FALSE TRUE AT1G54990.1 AXR4 (AUXIN RESISTANT 4) auxin response mutant (AXR4) similar to Epoxide hydrolase [Medicago truncatula] (GB:ABE90684.1); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474); contains domain ALPHA/BETA HYDROLASE (PTHR10992:SF20); contains domain ALPHA/BETA HYDROLASE RELATED (PTHR10992) 0.0125913329588796 0.105090477540736 0.91877056952378 1 0.777220410780911 13.8754349750145 0.0125913329588796 0.143283764208071
AT4G38020_at 5.91131236759015 6.24895974469015 6.07280861536857 5.72400099992297 6.36521692806144 5.73610456478987 5.54886962976888 4.95076166736199 5.01491185555856 5.42504982809879 4.42748111689549 4.37854748889625 4.90258293869451 4.85499772362122 5.40346638996313 5.47975192144776 5.17683078450396 4.89410956810306 5.3937995330218 0.197903194091359 0.198237551060411 0.209257225559007 0.198254925869832 0.204975525610062 0.193774412342049 0.205851909734711 0.199790137152221 0.194371581058102 0.195639995147065 0.203661341460755 0.199674772866665 0.208435891583956 0.202305763970590 0.194744907049713 0.193774412342049 0.201715230563444 0.193774412342049 0.195423912942514 4 4 + 17862186 17862955 17862670.636 17861517 17863054 + gene protein_coding_gene FALSE TRUE AT4G38020.1 tRNA/rRNA methyltransferase (SpoU) family protein similar to putative RNA methyltransferases [Oryza sativa] (GB:AAK14417.1); similar to Os03g0685100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050924.1); contains InterPro domain tRNA/rRNA methyltransferase, SpoU; (InterPro:IPR001537) -0.0143212446805618 -0.104765832590224 0.91902047657384 1 0.777184705772162 10.9285750132319 -0.0143212446805618 0.172116588150532
AT2G30100_at 6.5418873245148 6.98731194640324 7.02125200391517 6.94231893639218 7.23601328850072 6.88508697626006 7.50312355546603 7.16979437334955 6.71566090177696 6.238543948124 6.8373332504633 6.70582525874853 6.2884374119052 6.6549178795289 6.25100821729051 6.75480280685897 6.60846654061873 5.90049153997472 6.52295556890556 0.231313969635532 0.225597087400341 0.235770340780653 0.229134419027384 0.228780260167204 0.236440378458216 0.229619141824060 0.231509222276447 0.241828603123633 0.229221465875265 0.227167201475705 0.225597087400341 0.232577264721279 0.243489076284017 0.230769956143474 0.226385226696898 0.240393239965665 0.241326149536898 0.235124278365240 2 2|0 +|/ 12857947 12858921 12858456.556 12854905 12859169 + gene protein_coding_gene FALSE TRUE AT2G30100.1 ubiquitin family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G07910.1); similar to ubiquitin family protein, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47746.1); similar to Os10g0456200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064753.1); similar to Os05g0353300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055281.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Ubiquitin; (InterPro:IPR000626) -0.0107939708808014 -0.103683660130944 0.919853585936933 1 0.77706648226648 13.5321221353214 -0.0107939708808014 0.114646741700239
AT2G39730_at 13.7940699626590 13.8992907038606 13.9550188343966 13.9507449796705 13.6654245869104 13.8144940988998 14.1132940866320 14.3323621877335 14.6425155470704 14.6096238054803 14.9154955257515 14.8470169762180 14.8968521642564 14.8671930380006 14.7629667684944 14.8556162498101 14.594560678488 14.6967595055475 14.5494508398138 0.0501453715286085 0.0473382491084821 0.0520791575618645 0.0491962067294054 0.0494244253705991 0.0544141860550683 0.0500210315912482 0.0483294137631872 0.0501584076390381 0.0471822174896296 0.0478084123856823 0.0476920891443092 0.0473992498689746 0.0482110865142622 0.0483520761879536 0.0479786305300553 0.0526574049660533 0.0482328454955159 0.0489415253580545 2 2|0 -|/ 16578085 16578804 16578430.889 16577824 16580626 - gene protein_coding_gene FALSE TRUE AT2G39730.1|AT2G39730.2|AT2G39730.3 RCA (RUBISCO ACTIVASE) Rubisco activase, a nuclear-encoded chloroplast protein that consists of two isoforms arising from alternative splicing in most plants. Required for the light activation of rubisco. Identical to Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) (RCA) [Arabidopsis Thaliana] (GB:P10896;GB:Q39197;GB:Q39198;GB:Q940T8); similar to ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative [Arabidopsis thaliana] (TAIR:AT1G73110.1); similar to chloroplast ribulose-1,5-bisphosphate carboxylase/oxygenase activase large protein isoform [Acer rubrum] (GB:ABI94076.1); similar to AAA ATPase, central re (GB:ABE83482.1); similar to Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (RuBisCO activase 1) (RA 1) (RuBisCO activase alpha form) (GB:Q7X9A0); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959)|Identical to Ribulose bisphosphate carboxylase/oxygenase activase, chloroplast precursor (RuBisCO activase) (RA) (RCA) [Arabidopsis Thaliana] (GB:P10896;GB:Q39197;GB:Q39198;GB:Q940T8); similar to ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putative [Arabidopsis thaliana] (TAIR:AT1G73110.1); similar to Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplast precursor (RuBisCO activase 2) (RA 2) (RuBisCO activase beta form) (GB:Q7X999); similar to ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 [Gossypium hirsutum] (GB:AAG61120.1); similar to Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplast precursor (RuBisCO activase 1) (RA 1) (RuBisCO activase alpha form) (GB:Q7X9A0); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) 0.00784696947366736 0.103592548598357 0.919923732840811 1 0.777056584526826 28.6431312688164 0.00784696947366736 0.0493440187397484
AT1G61100_at 6.24517401743272 6.76435739039381 6.20747590578525 6.2698544162665 6.90014598570135 6.53337130898891 7.08638253528951 6.99469255016546 7.45427273257049 6.40554348776448 8.70968707797606 7.29801627852484 7.71055438081814 8.3664975260287 7.00018342919144 6.82039993141717 6.21004480361124 7.31100926317182 7.47734635763525 0.168706126850928 0.164156629702028 0.163770652651717 0.173010382903913 0.168327867934954 0.167898954398786 0.164371978998678 0.168475891760313 0.171802364858786 0.171270470065945 0.174497754675622 0.167595087614711 0.166007266293048 0.174102097459696 0.166898529249035 0.17496964236479 0.170531053226823 0.173329880812061 0.167277823312594 1 1 - 22512503 22513118 22512877.091 22512203 22515936 - gene protein_coding_gene FALSE TRUE AT1G61100.1 disease resistance protein (TIR class), putative similar to CIP7 (COP1-INTERACTING PROTEIN 7) [Arabidopsis thaliana] (TAIR:AT4G27430.1); similar to Os03g0861100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051978.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:AAP44760.1); similar to Os07g0445600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059533.1) 0.0104859206087409 0.102251008439512 0.9209566719164 1 0.77691185329294 13.8955250699192 0.0104859206087409 0.111666955733318
AT4G17950_at 4.55285238054851 4.96717265601453 4.45560725194680 4.6901921197195 4.88593425525548 4.76111402432428 4.40101499718965 5.03689662996646 4.55416684467951 4.69085494905525 4.69745132249308 4.63493644878357 4.52470240340949 4.75645278018812 4.38505760070191 4.78931405360317 4.59299560037768 4.32009456440052 4.46472932445891 0.249389048589686 0.231994656432289 0.246911572333659 0.232253849032480 0.231990536387729 0.243049907039011 0.253215352286546 0.237821163807316 0.241342722458963 0.233878871908696 0.240382749639791 0.237694457836192 0.241920299194955 0.243929724026214 0.240142421300023 0.23862443089133 0.252799397066224 0.248469849957488 0.233500258342200 4 4 - 9967319 9968075 9967553.6 9967002 9969244 - gene protein_coding_gene FALSE TRUE AT4G17950.1 DNA-binding family protein similar to DNA-binding family protein [Arabidopsis thaliana] (TAIR:AT5G46640.1); similar to Os04g0589900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053702.1); similar to putative AT-Hook DNA-binding protein [Oryza sativa] (GB:AAK00433.1); contains InterPro domain Protein of unknown function DUF296; (InterPro:IPR005175); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.0117818478857357 -0.100292150186414 0.922465208264848 1 0.776703902609282 9.29761935744194 -0.0117818478857357 0.139157568213049
AT1G30380_at 14.3058985749337 14.3901669249218 14.3434901654185 14.3354654389765 14.4078680901671 14.2660108046576 14.6083619573945 14.6685008319651 15.0910392605542 15.0670047108533 15.2651481105393 15.3090265179017 15.2283924940336 15.2311863443941 15.1453772608366 15.1376925317371 14.8839959376137 15.2536013458841 14.9648022260501 0.0511205262551054 0.0482740498392235 0.0512931324061196 0.0490111105442630 0.0485621250624338 0.0521253546893922 0.0524448177871397 0.0477224663284957 0.0542647446719638 0.0482021068080584 0.0484310687440575 0.0478361654682203 0.0483996271280984 0.0497013466195634 0.0502063803929927 0.0475323456775827 0.055255943953644 0.0486626605333266 0.0479173302572327 1 1|0 +|/ 10722320 10722951 10722689.2 10722179 10723229 + gene protein_coding_gene FALSE TRUE AT1G30380.1 PSAK (PHOTOSYSTEM I SUBUNIT K) Encodes subunit K of photosystem I reaction center. Identical to Photosystem I reaction center subunit psaK, chloroplast precursor (Photosystem I subunit X) (PSI-K) (PSAK) [Arabidopsis Thaliana] (GB:Q9SUI5;GB:Q9C8G7); similar to unknown [Brassica rapa] (GB:ABB97030.1); contains InterPro domain Photosystem I psaG/psaK protein; (InterPro:IPR000549) -0.00708480605860462 -0.100003905884256 0.922687216201407 1 0.776673641464241 29.5270959987311 -0.00708480605860462 0.0304230516017812
AT3G16090_at 4.99301155126225 5.22689346887103 4.54754817764178 5.10358642458657 5.54460284247099 4.99315767999324 5.05929032010131 5.45690313417497 5.21885454083066 5.26528971193006 5.61088441781707 5.52665306916428 5.36580615639111 5.59171233648592 4.68913334300663 5.6004982521116 5.21084274566478 4.8841374268422 5.11162220135827 0.230369216745565 0.229629508407523 0.239775362104330 0.226195900030856 0.235063372634384 0.238945843434544 0.245448270553043 0.233582469182508 0.232975932955138 0.227695530338615 0.224938886883318 0.226457194579683 0.226828464644940 0.225884161246945 0.227145132504696 0.224938886883318 0.236140914838122 0.229959671322627 0.230858735806261 3 3|0 +|/ 5457822 5458606 5458117.7 5456150 5458972 + gene protein_coding_gene FALSE TRUE AT3G16090.1 zinc finger (C3HC4-type RING finger) family protein similar to protein binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT1G65040.2); similar to Zinc finger, RING-type; RINGv [Medicago truncatula] (GB:ABE90442.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) -0.0127155935167275 -0.0994140510152843 0.923141549146275 1 0.776611986724515 10.3698978431253 -0.0127155935167275 0.157286317569638
AT1G04300_at 7.40059376878643 7.98357389838527 7.36308163293329 7.69672314224417 8.01724557036122 7.84888246047179 7.31496173991506 7.1285599484462 7.61006398884241 7.77577669496097 7.34582515486467 7.73226529155029 7.67985662054711 7.57506436876282 6.9701715911313 8.02071177454558 7.53220821795466 7.34997470307263 8.07967075675455 0.165444788582214 0.166550316381446 0.168226534383212 0.174537209016696 0.162404818319103 0.177357381920088 0.177613316927588 0.169232120808961 0.169198721514957 0.169981653606645 0.162404818319103 0.162404818319103 0.173223561349012 0.174513400537966 0.165320289271307 0.166599949193534 0.165697416328137 0.165874759476984 0.162404818319103 1 1 - 1148829 1149390 1149081.364 1148658 1154651 - gene protein_coding_gene FALSE TRUE AT1G04300.1|AT1G04300.2|AT1G04300.3 similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.2); similar to MATH domain, putative [Medicago truncatula] (GB:ABE87963.1); similar to Os12g0597100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067191.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322)|similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G43560.2); similar to MATH domain, putative [Medicago truncatula] (GB:ABE87963.1); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.0107582844648200 -0.0985674334052222 0.923793704389406 1 0.776524129650623 15.2680012012711 -0.0107582844648200 0.124102548196907
AT4G10770_at 8.52860746835687 8.76913919090517 9.34111286054185 9.43855849683488 9.70574766859553 9.17794306438184 10.3095107011622 10.5064925088732 9.46619392189712 9.75779382385646 9.9750036447365 9.39789644590591 10.1857565754200 10.1438190739066 9.30454053213947 9.98494226058307 9.44650860978507 9.6432922109839 9.6606864610694 0.125448151236303 0.129142076538749 0.135503817243099 0.130981239161473 0.134961087616020 0.135666173818131 0.139551272245336 0.132639879697603 0.139699165849007 0.125448151236303 0.125448151236303 0.12628186608884 0.127850053856876 0.132587355210883 0.126909314018606 0.129236064538186 0.150968270660192 0.140535784560676 0.125448151236303 4 4 - 6628644 6629199 6628927 6628400 6632595 - gene protein_coding_gene FALSE TRUE AT4G10770.1 ATOPT7 (oligopeptide transporter 7); oligopeptide transporter oligopeptide transporter Identical to Oligopeptide transporter 7 (AtOPT7) (OPT7) [Arabidopsis Thaliana] (GB:O82485); similar to ATOPT8 (oligopeptide transporter 8), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53520.1); similar to ATOPT9 (oligopeptide transporter 9), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT5G53510.1); similar to ATOPT6 (oligopeptide transporter 6), oligopeptide transporter [Arabidopsis thaliana] (TAIR:AT4G27730.1); similar to putative sexual differentiation process protein isp4 [Oryza sativa (japonica cultivar-group)] (GB:BAD08158.1); similar to Oligopeptide transporter OPT superfamily [Medicago truncatula] (GB:ABE92893.1); similar to Peptidase aspartic, active site; Oligopeptide transporter OPT superfamily [Medicago truncatula] (GB:ABE84685.1); contains InterPro domain Tetrapeptide transporter, OPT1/isp4; (InterPro:IPR004648); contains InterPro domain Oligopeptide transporter OPT superfamily; (InterPro:IPR004813); contains InterPro domain tRNA-binding arm; (InterPro:IPR010978) 0.00969911941953527 0.0966757165574472 0.925251125669231 1 0.776330526898833 19.1663613223516 0.00969911941953527 0.107340033419443
AT4G33530_at 6.5210986857809 6.28153652777995 5.811917094067 5.60227965012416 6.57026294472538 5.60670872904743 6.7451466940484 6.6298723305492 7.05108928267028 6.75302140530357 8.55250732589936 8.09019765678524 7.40380754234631 8.00517746626692 7.92204134496756 7.3756617769274 6.02873334023984 7.30813941137165 6.93258409050868 0.222973053893599 0.218215557341938 0.229555098481416 0.214767898420280 0.213908184951808 0.231924062997465 0.216589826323833 0.216301284687846 0.226351177337836 0.214548592964660 0.212472881588838 0.210840631264190 0.213811879936284 0.214748413947863 0.214092777656874 0.210840631264190 0.227491326125866 0.212378523906159 0.213881434597094 4 4 - 16126534 16127163 16126845.455 16126234 16130441 - gene protein_coding_gene FALSE TRUE AT4G33530.1 KUP5 (K+ uptake permease 5); potassium ion transporter potassium transporter Identical to Potassium transporter 13 (AtPOT13) (AtKT5) (POT13) [Arabidopsis Thaliana] (GB:Q8LPL8;GB:O22401;GB:Q9M072;GB:Q9SU96); similar to KUP10 (K+ transporter 10), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT1G31120.1); similar to potassium transporter family protein [Arabidopsis thaliana] (TAIR:AT1G60160.1); similar to KUP7 (K+ uptake permease 7), potassium ion transporter [Arabidopsis thaliana] (TAIR:AT5G09400.1); similar to putative potasium transporter [Oryza sativa (japonica cultivar-group)] (GB:CAD21005.1); similar to Probable potassium transporter 14 (OsHAK14) (GB:Q69RI8); similar to K+ potassium transporter [Medicago truncatula] (GB:ABE93376.1); contains InterPro domain K+ potassium transporter; (InterPro:IPR003855) 0.0134650926122009 0.0965379180446424 0.925357300460673 1 0.77631657051999 13.4701102449793 0.0134650926122009 0.176741499199738
AT3G53270_at 5.91675032759172 6.25998891845179 5.55833477758975 5.52422649533089 5.9168875832594 5.73276383020758 4.78926855266327 4.95615078875706 5.4736526081471 5.15394362519382 5.27507285346033 5.02954326346936 4.84926272353952 5.53114785186568 4.4084703854748 5.12476562499765 4.65783087851725 5.22266645313692 5.06557551905257 0.211048012301805 0.205316459440968 0.207000493179231 0.204586052461748 0.205408196523064 0.210671253887432 0.204389881420361 0.205060084645912 0.212987289647502 0.206059656226677 0.219214536036983 0.203176839862386 0.203176839862386 0.203176839862386 0.215863385141655 0.207270394679103 0.214206843912575 0.212048868122834 0.209070675375703 3 3|0 -|/ 19761392 19762653 19762025.7 19761025 19764176 - gene protein_coding_gene FALSE TRUE AT3G53270.1|AT3G53270.2|AT3G53270.3|AT3G53270.4|AT3G53270.5 similar to novel protein (zgc:56450) [Danio rerio] (GB:CAH68915.1); similar to Os10g0493800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064940.1); contains domain SUBFAMILY NOT NAMED (PTHR15131:SF6); contains domain FAMILY NOT NAMED (PTHR15131); contains domain LDH C-terminal domain-like (SSF56327) -0.00809936087959306 -0.0957459643326706 0.92596753730076 1 0.776236745683562 10.7034975367842 -0.00809936087959306 0.073569065426039
AT3G07790_at 8.26223886170121 8.63604850398246 8.29393720363999 8.17546502297065 8.64215498402754 8.78898551862232 7.9137759196201 8.30280458194691 8.54563503626091 7.98480280064375 8.07163980040696 7.86521261806865 7.9683861227396 8.1718045877945 7.79268561530425 7.93277563601438 7.87273079596126 8.12482002090172 8.03895030574425 0.188491543665114 0.185630053155617 0.183500619139344 0.179880193180792 0.183199586795205 0.18446478075479 0.190111840480566 0.187719756773530 0.187141154968092 0.185186925244691 0.184040243605980 0.17889343540993 0.188077734930407 0.183750953622876 0.193990111342484 0.179030756018329 0.186640372943959 0.181749201276178 0.180325886318028 3 3 + 2488532 2488997 2488766 2487375 2489226 + gene protein_coding_gene FALSE TRUE AT3G07790.1 DGCR14-related similar to PREDICTED: similar to Expressed sequence 2 embryonic lethal [Gallus gallus] (GB:XP_415216.2); similar to Os06g0502900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001057711.1); contains domain gb def: F17A17.13 protein (MLP3.24 protein) (PTHR12940:SF3); contains domain ES-2 PROTEIN - RELATED (PTHR12940) -0.00918521619913704 -0.0955688289455068 0.926104035375307 1 0.776218981128016 16.4593277981632 -0.00918521619913704 0.0989097579149606
AT2G20725_at 8.4631373324869 8.26429547018825 8.3722059806017 8.26866857080617 8.66585467332737 8.2445821558569 8.84752170775048 8.39109722750728 8.73103431906696 8.84677888613298 8.95804292074752 8.74992411371306 8.9241612328788 9.03418212326548 8.85120520942437 9.14557618200301 9.06542913641761 8.8007291697679 8.99357691692837 0.113195474555193 0.112672788818953 0.113809722425525 0.113518053287702 0.115838596153532 0.116224587939192 0.110792422750277 0.115890097170934 0.121833407395891 0.109006665401243 0.117218705857444 0.111116961115510 0.114263011379438 0.117121095720943 0.118449355265703 0.109984010969376 0.116558670901555 0.116523078137808 0.110028764691345 2 0|2 /|- 8941198 8941633 8941390.875 8940652 8942577 - gene protein_coding_gene FALSE TRUE AT2G20725.1 CAAX amino terminal protease family protein similar to CAAX amino terminal protease family protein [Arabidopsis thaliana] (TAIR:AT1G14270.1); similar to COG1266: Predicted metal-dependent membrane protease [Nostoc punctiforme PCC 73102] (GB:ZP_00111909.1); contains InterPro domain Abortive infection protein; (InterPro:IPR003675) -0.00982943450870355 -0.0945954964844947 0.926854117846777 1 0.776121953207486 17.3388135406840 -0.00982943450870355 0.114275310586060
AT3G13870_at 9.06308243182655 9.14510694894412 9.0646184013842 9.17393126905033 9.1618924083999 8.58201621286248 9.11533437314698 9.13415983632469 8.59602083578677 8.78513169294029 9.08316104541693 8.9842969813756 8.85674496918232 8.74251814109435 8.75248845771378 8.72175400051868 8.33989844135334 8.60818465061815 8.60137049616986 0.152736387267835 0.159618008106176 0.159279262719078 0.160278457986451 0.156991758332802 0.161763544370532 0.158671031253301 0.162045242214048 0.168053402839980 0.150903558322919 0.149818122061963 0.150932587910327 0.154492820974953 0.158644011394916 0.161950320520633 0.151878323037129 0.168017276530853 0.166670146358333 0.150037761703766 3 3 - 4565801 4566823 4566237.727 4565419 4571267 - gene protein_coding_gene FALSE TRUE AT3G13870.1|AT3G13870.2 RHD3 (ROOT HAIR DEFECTIVE 3) required for regulated cell expansion and normal root hair development. Encodes an evolutionarily conserved protein with putative GTP-binding motifs that is implicated in the control of vesicle trafficking between the endoplasmic reticulum and the Golgi compartments. similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT5G45160.1); similar to root hair defective 3 GTP-binding (RHD3) family protein [Arabidopsis thaliana] (TAIR:AT1G72960.1); similar to root hair defective 3 GTP-binding protein [Triticum aestivum] (GB:AAS67855.2); similar to Os01g0575000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043388.1); similar to root hair defective 3 GTP-binding protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD45217.1); contains InterPro domain Root hair defective 3 GTP-binding; (InterPro:IPR008803) -0.00925824851309098 -0.0942686840233244 0.927105987786774 1 0.776089596714381 17.7660036573465 -0.00925824851309098 0.103151050164266
AT3G21160_at 4.90997882752277 5.60374165457048 4.90143784742706 5.20487250040178 5.52752434888873 5.15618632915151 5.10682770447223 5.05253458003289 4.59006989029403 4.65584574522924 4.32791817567393 4.98557992711692 4.45902792721678 4.92409297378623 4.51362640806637 4.75574113247665 3.68351654257902 4.62723449555846 4.37691976239308 0.265794435327126 0.258315797918547 0.269854096214666 0.256712837352715 0.256026320616697 0.259302615129262 0.260148327658343 0.255836481707193 0.259278219640298 0.250295158382330 0.250342536781241 0.250295158382330 0.259943560114763 0.252411418648212 0.251102768661191 0.256451694035922 0.266507859097101 0.253731042250919 0.250295158382330 3 3|0 -|/ 7414148 7415022 7414541.7 7413853 7418416 - gene protein_coding_gene FALSE TRUE AT3G21160.1 mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative similar to mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Arabidopsis thaliana] (TAIR:AT1G51590.1); similar to Os04g0606400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053800.1); similar to OSIGBa0113I13.2 [Oryza sativa (indica cultivar-group)] (GB:CAH66776.1); similar to mannosyl-oligosaccharide 1,2-alpha-mannosidase [Glycine max] (GB:AAF16414.1); contains InterPro domain Glycoside hydrolase, family 47; (InterPro:IPR001382) 0.0114408149940923 0.0941556071306581 0.927193136638733 1 0.776078427406242 9.72065663928247 0.0114408149940923 0.146251067005128
AT1G52420_at 7.9229579070486 8.28403726068542 8.13236571282657 8.28764704276662 7.8283648675242 7.75223635038844 7.9475858675257 7.73445894560833 7.64256285768614 7.63962842285706 7.5519568699396 8.00039497758124 7.58787495818771 7.74386084407045 7.55869523348399 7.5057893828602 7.49212295555913 7.68527348303869 7.67513748484869 0.172901256318169 0.160640201635083 0.166722157930999 0.157852350706903 0.159327142298237 0.167019066474739 0.163992651703297 0.154811958650479 0.164859460630467 0.165581437631154 0.160872635161575 0.159580246075607 0.159940895829408 0.158590422732950 0.166260036668073 0.160829090520861 0.172082826218549 0.160481891847725 0.154944653938397 1 1 + 19533865 19534667 19534302.182 19531511 19534956 + gene protein_coding_gene FALSE TRUE AT1G52420.1 glycosyl transferase family 1 protein similar to glycosyl transferase family 1 protein [Arabidopsis thaliana] (TAIR:AT3G15940.1); similar to Os01g0262600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042653.1); similar to Glycogen synthase, corynebacterial [Thermoanaerobacter ethanolicus ATCC 33223] (GB:ZP_00777833.1); contains InterPro domain Glycosyl transferase, group 1; (InterPro:IPR001296) 0.00809833222613743 0.0934359272192254 0.927747821327015 1 0.776007653621592 15.6328012492404 0.00809833222613743 0.0784892526929613
AT2G31570_at 11.6095037988007 11.5538901803353 11.8674699219599 11.8463346463352 11.6453109586490 11.5231158513447 11.8981784108102 11.9359814924157 11.6905420896814 11.5787230596451 11.7817071881583 11.6474955956231 11.7740114993997 11.6712117019520 11.3870525729868 11.6385587864422 11.5501598528594 11.5854723605563 11.5717083328868 0.0742977089671595 0.0719645610447219 0.075287732524377 0.0728428673710018 0.0713301092581101 0.0738384890804596 0.0769212428150211 0.0713714394604658 0.0765750533846622 0.0729037553170141 0.0724653313270732 0.0711391128637069 0.0752342381188605 0.0735177009245868 0.0743473262294707 0.0711391128637069 0.0727592448175425 0.0731947528119471 0.0735532824976398 2 2|0 -|/ 13445294 13446821 13445785.5 13445051 13446958 - gene protein_coding_gene FALSE TRUE AT2G31570.1 ATGPX2 (GLUTATHIONE PEROXIDASE 2); glutathione peroxidase glutathione peroxidase GPx Identical to Probable glutathione peroxidase 2 (EC 1.11.1.9) (GPX2) [Arabidopsis Thaliana] (GB:O04922); similar to ATGPX7 (GLUTATHIONE PEROXIDASE 7), glutathione peroxidase [Arabidopsis thaliana] (TAIR:AT4G31870.1); similar to phospholipid hydroperoxide glutathione peroxidase [Lycopersicon esculentum] (GB:AAP59427.1); contains InterPro domain Thioredoxin-like fold; (InterPro:IPR012336); contains InterPro domain Thioredoxin fold; (InterPro:IPR012335); contains InterPro domain Glutathione peroxidase; (InterPro:IPR000889) -0.00651487933772898 -0.0934317957061303 0.927751005762021 1 0.776007248890139 23.3565314186572 -0.00651487933772898 0.0244125434224296
AT1G56590_at 6.485207161802 6.94029920131925 6.71454167640928 6.53097514762433 7.53937483577235 7.21673112670189 6.85626360744244 6.79930065075982 7.08788029149714 6.56498188693858 7.00858162411502 6.84556366417147 6.80962623483187 6.8681116495813 6.70448013371237 6.6555064618467 5.58787250909624 6.60474506024297 6.99813814389933 0.224475177029958 0.208786998048458 0.22124732679467 0.221691553430832 0.211736199209051 0.230166851515978 0.207510716334593 0.205525277369220 0.219788365216135 0.209895001603539 0.208676406529101 0.209055918179560 0.211486166561773 0.222122174003533 0.208874108855731 0.205525277369220 0.229578934547735 0.221376506890235 0.222278466964743 1 1 - 21205924 21206640 21206304.182 21205685 21208392 - gene protein_coding_gene FALSE TRUE AT1G56590.1 clathrin adaptor complexes medium subunit family protein similar to clathrin adaptor complexes medium subunit family protein [Arabidopsis thaliana] (TAIR:AT1G60780.1); similar to PREDICTED: similar to Adapter-related protein complex 3 mu 2 subunit (Clathrin coat assembly protein AP47 homolog 2) (Clathrin coat associated protein AP47 homolog 2) (Gol (GB:XP_882836.1); similar to Os05g0383100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055410.1); contains InterPro domain Clathrin adaptor complex, medium chain; (InterPro:IPR001392); contains InterPro domain Longin-like; (InterPro:IPR011012); contains InterPro domain Mu2 adaptin subunit (AP50) of AP2; (InterPro:IPR008968) -0.00898390780792901 -0.0919619722741178 0.9288839842882 1 0.775864395246313 13.6449505216346 -0.00898390780792901 0.102109463426093
AT1G03860_at 8.5567046995958 8.44973369299148 8.79973547941956 8.81394420719691 8.24257298285005 8.21770389199595 8.57678098408828 8.26518886463637 7.19934610238951 7.35030176315734 7.03568684424325 7.09817230678725 7.2208012640646 7.30752165221569 7.6527236940207 7.71158798409943 7.64371897257291 7.35674580226436 7.7974187989492 0.170524011419728 0.165743226928946 0.170970208757651 0.167732579857947 0.165743226928946 0.170123751660902 0.168910100086565 0.178068737051344 0.177734280444942 0.172890724134883 0.169484577080065 0.173273578497101 0.179334392107802 0.166432390405304 0.178396478234190 0.169654864301489 0.165743226928946 0.172045057738920 0.171939690083701 1 1 - 979647 980283 980030.636 979307 981884 - gene protein_coding_gene FALSE TRUE AT1G03860.1|AT1G03860.2|AT1G03860.3 ATPHB2 (PROHIBITIN 2) prohibitin 2 similar to ATPHB1 (PROHIBITIN 1) [Arabidopsis thaliana] (TAIR:AT4G28510.1); similar to prohibitin 1-like protein [Brassica napus] (GB:AAK07610.1); contains InterPro domain Prohibitin; (InterPro:IPR000163); contains InterPro domain Band 7 protein; (InterPro:IPR001107) -0.00713266321375738 -0.0910421377356578 0.929593104196083 1 0.775776145457799 15.9039916186129 -0.00713266321375738 0.0572266431386706
AT4G18160_at 6.06400596161862 6.50491012259624 6.37074313717167 6.17800244136824 6.94147737760736 6.63045455651807 6.67056101171859 6.57145566464001 5.68825243898663 5.57209786481323 5.03888253523557 5.33597209888813 5.40292810080019 5.54045047527513 5.06244772918134 5.80955810407648 6.1004498507158 5.05560234920251 5.27919531567575 0.222607657693716 0.222644967701118 0.226667789214034 0.225619239799667 0.225548266830626 0.225395378309253 0.229375245094497 0.223523170486191 0.231385266209337 0.238896769140511 0.231234122256673 0.22184621684147 0.222946681855545 0.22184621684147 0.228509880942076 0.22184621684147 0.229365688257440 0.227783047022478 0.228084344310908 4 4 + 10056554 10057486 10056835.182 10055707 10057747 + gene protein_coding_gene FALSE TRUE AT4G18160.1 KCO6 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6); outward rectifier potassium channel Encodes AtTPK3 (KCO6), a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins.AtTPK3 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. Identical to Probable calcium-activated outward-rectifying potassium channel 6 (AtKCO6) (KCO6) [Arabidopsis Thaliana] (GB:Q9SVV6); similar to KCO2 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2), calcium ion binding / outward rectifier potassium channel [Arabidopsis thaliana] (TAIR:AT5G46370.1); similar to putative outward-rectifying potassium channel KCO1 [Oryza sativa (japonica cultivar-group)] (GB:BAD33183.1); contains InterPro domain K+ channel, pore region; (InterPro:IPR001622); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain K+ channel, two pore; (InterPro:IPR003280); contains InterPro domain Ion transport 2, bacterial; (InterPro:IPR013099); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.00872963985683606 -0.090037673840967 0.930367542477774 1 0.775680787467635 11.9571854234451 -0.00872963985683606 0.10062537500586
AT4G16990_at 9.1020936435114 9.0988123752041 8.95560190160629 8.76553305693774 9.51240633736793 8.80823571267383 9.49493914815363 9.0983413318865 8.83892826421277 8.64989967946203 9.34936520237494 8.88907226361094 9.11842313621244 8.99929867389863 8.83049772009138 9.23951718065753 8.78053692340035 8.91773011456867 8.92881113301375 0.141858567639452 0.149557423577775 0.152105100071122 0.145571997138261 0.148870518626344 0.154213584828020 0.143824813971877 0.148037857237342 0.146964999759101 0.147626775502681 0.155819344548366 0.142263784170953 0.146833189048627 0.147376116281567 0.142615120679906 0.147770945095583 0.150230717726460 0.144259627615984 0.143246686274601 4 4 + 9561381 9561912 9561668.909 9560154 9565574 + gene protein_coding_gene FALSE TRUE AT4G16990.1|AT4G16990.2|AT4G16990.3|AT4G16990.4 disease resistance protein (TIR-NBS class), putative|ATP binding similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT5G51630.1); similar to nematode resistance protein [Solanum tuberosum] (GB:AAP44390.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Toll-Interleukin receptor; (InterPro:IPR000157); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591)|similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16940.1); similar to disease resistance protein (TIR-NBS-LRR class), putative [Arabidopsis thaliana] (TAIR:AT4G16960.1); similar to NBS-LRR disease resistance protein RPP5-like protein [Camelina sativa] (GB:AAL92032.1); contains InterPro domain NB-ARC; (InterPro:IPR002182); contains InterPro domain Disease resistance protein; (InterPro:IPR000767); contains InterPro domain Disease resistance/zinc finger/chromosome condensation-like region; (InterPro:IPR013591) 0.0107865435399404 0.0898599346205689 0.930504586997234 1 0.775664023869086 18.0152128604584 0.0107865435399404 0.143675296108269
AT3G16800_at 7.16638003803573 7.42876187988664 7.90229504477045 7.84642226701287 9.0668349464555 8.14300112433262 8.608793310456 8.22416761818782 9.14246464358962 8.45763897593933 8.68152115513181 8.35942657975806 8.99811404292486 8.88899326095973 7.91799244485495 8.89350200103218 7.92306063958343 8.2536591705537 9.0922758775662 0.176016130310713 0.175458663188007 0.172724788790633 0.175089846991527 0.173295241178612 0.182965801432727 0.171548997367502 0.173728900579781 0.183983199324488 0.171175333948239 0.162777043131928 0.167262667221196 0.163487316075884 0.168343516459921 0.174522120805681 0.166740047636338 0.191807368547097 0.174927800576748 0.162777043131928 3 3|0 +|/ 5721966 5722887 5722388.778 5721026 5723191 + gene protein_coding_gene FALSE TRUE AT3G16800.1|AT3G16800.2|AT3G16800.3 protein phosphatase 2C, putative / PP2C, putative|protein phosphatase type 2C similar to protein phosphatase 2C, putative / PP2C, putative [Arabidopsis thaliana] (TAIR:AT3G05640.2); similar to Protein phosphatase 2C-like [Medicago truncatula] (GB:ABD28350.1); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) -0.0126567682569476 -0.0897510042640495 0.9305885781577 1 0.775653766364659 16.7418287757496 -0.0126567682569476 0.179290966823147
AT2G29080_at 9.49803882598973 9.6707177443625 9.47568062040835 9.54219599834787 9.74301521143916 9.58874659211552 9.67197019802903 9.62040748512672 9.20275785421557 9.51690528186302 9.17351153307764 9.23128542030223 9.52228629122393 9.22748298989434 9.2609004318676 9.5730690176154 9.48448753871518 9.48990767471664 9.34753892855647 0.104241022742340 0.105825045122867 0.105472885021537 0.104729200217681 0.105249419674209 0.101060925677709 0.104678590612203 0.105480834816969 0.109412662054252 0.101060925677709 0.106493492690346 0.102375988518324 0.101174495808406 0.107099857990656 0.110417173232656 0.101060925677709 0.105843354497287 0.105900390854428 0.104211813419072 2 2|0 -|/ 12497037 12497654 12497273.7 12496704 12500362 - gene protein_coding_gene FALSE TRUE AT2G29080.1 FTSH3 (FtsH protease 3); ATP-dependent peptidase/ ATPase encodes an FtsH protease that is localized to the mitochondrion similar to FTSH10 (FtsH protease 10), ATPase [Arabidopsis thaliana] (TAIR:AT1G07510.1); similar to AAA ATPase; Bacterial luciferase-like; Peptidase M41, FtsH extracellular [Medicago truncatula] (GB:ABE82014.1); similar to AAA-metalloprotease FtsH [Pisum sativum] (GB:AAK77908.1); similar to AAA ATPase; Peptidase M41, FtsH extracellular [Medicago truncatula] (GB:ABE78727.1); contains InterPro domain Peptidase M41; (InterPro:IPR000642); contains InterPro domain Peptidase M41, FtsH; (InterPro:IPR005936); contains InterPro domain AAA-protein subdomain; (InterPro:IPR003960); contains InterPro domain Peptidase M41, FtsH extracellular; (InterPro:IPR011546); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain AAA ATPase, central region; (InterPro:IPR003959) -0.00662080858383196 -0.0897330838162892 0.930602395874218 1 0.775652080062332 18.9643967763382 -0.00662080858383196 0.0426360562139819
AT4G11800_at 6.6248240024804 6.43082566776872 6.75343065501971 6.5563436042451 7.08571963900506 6.5067985864692 6.6526969098971 6.5983862305502 6.55906722076043 6.41440947202493 6.46464114876877 6.40793377350517 6.26705807742266 6.67342782345016 6.18333789308144 6.45878191449095 5.94060286356472 6.32302980722408 6.43806758156166 0.202682961947283 0.191138111322525 0.205516037730347 0.204054212984593 0.197576301196196 0.197933879952257 0.204507200172793 0.196984515974037 0.216748362808651 0.201092265127024 0.194787674411585 0.201306781359135 0.214693021996677 0.205410660357467 0.201221888684089 0.193893988303127 0.216877151701055 0.208963701364910 0.199230917193821 4 4 - 7093690 7094445 7094130.909 7093536 7098468 - gene protein_coding_gene FALSE TRUE AT4G11800.1 calcineurin-like phosphoesterase family protein similar to calcineurin-like phosphoesterase family protein [Arabidopsis thaliana] (TAIR:AT4G23000.1); similar to Os07g0106000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058702.1); similar to Os07g0134500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058842.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAC81182.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.00911341154174306 0.0889756854785494 0.931186417074837 1 0.77558111662514 13.0563113723315 0.00911341154174306 0.111425958527451
AT2G15270_at 6.53699574252423 6.59230050056366 6.37014706164041 6.49577687909656 6.70146673123075 6.4153761954816 6.32833001221586 6.33067407678474 6.03507902268851 5.67426733881551 5.97711980346898 6.0149838799163 5.58290810455934 6.02597161541804 6.17791017283819 5.64811200804946 5.57734956457435 5.75057899931564 6.01052982682277 0.200325871273253 0.203971013586689 0.207844794122084 0.209315169670476 0.203668688121869 0.213001705779292 0.213018239684199 0.203460402570261 0.208958754308111 0.214703585405564 0.201047194617319 0.209061319613380 0.206059449401239 0.205365668612852 0.210692769661662 0.204861999375225 0.21160030241801 0.200325871273253 0.204279409104474 2 2|0 +|/ 6645050 6646275 6645272.5 6644960 6646501 + gene protein_coding_gene FALSE TRUE AT2G15270.1 similar to PREDICTED: similar to PRKR interacting protein 1 (IL11 inducible) [Canis familiaris] (GB:XP_850116.1); similar to Os09g0104300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062560.1); contains InterPro domain Protein of unknown function DUF1168; (InterPro:IPR009548) -0.00682099687559401 -0.0879532143768688 0.931974902583454 1 0.775486269771958 12.3468794822555 -0.00682099687559401 0.0549144623830751
AT3G19810_at 7.25975035094853 7.52295051003072 7.1158384035489 6.6655326658915 7.76242271526017 7.5049884161293 6.68634243479583 6.30840984831284 7.27831985255221 7.1182837792293 6.73233520253393 6.59787484953838 6.8142827063328 6.63365032384971 7.47374890588081 7.09857229801238 6.87978351270808 6.97413616947948 7.20266766600074 0.175561582426407 0.173100379262363 0.183171201028497 0.183997792693010 0.183721925877704 0.184101807877013 0.184075088135901 0.181686448598435 0.193717143009564 0.179916370664379 0.181966793286333 0.177176604794952 0.181821760072643 0.176879583424984 0.174982793125273 0.175956330968489 0.184897898298704 0.187377384710081 0.177429442308060 3 3|0 -|/ 6877800 6878421 6878094 6877581 6879405 - gene protein_coding_gene FALSE TRUE AT3G19810.1 similar to Os02g0831200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048617.1); similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:BAD23002.1); contains InterPro domain Protein of unknown function DUF177; (InterPro:IPR003772) 0.00931158048334102 0.0870560846298795 0.932666795587771 1 0.775403951023365 14.1534319657661 0.00931158048334102 0.120039955947100
AT4G36690_at 8.7855517466547 8.71145000048251 8.71083075587945 8.82677419999667 9.30845296559303 8.60295965869439 8.90500253703265 8.86812871944008 9.04633073159466 8.98727993044369 8.98990084411026 9.1897534312425 9.10680447664785 9.18808466754862 8.93169787205887 9.35756019680092 8.71305178599987 8.96362113913424 9.2086794806809 0.119273469165205 0.114981263833862 0.112786963928995 0.114990489559526 0.119163065973737 0.118984893104061 0.118236290024418 0.114867075209122 0.118547698242010 0.119039625613938 0.118050360783826 0.111150520696453 0.113641595376887 0.117126524014421 0.118037944516057 0.115888681254373 0.129841704880615 0.117364760310565 0.115516760418642 4 4 - 17294179 17295193 17294774.091 17293996 17297726 - gene protein_coding_gene FALSE TRUE AT4G36690.1|AT4G36690.2|AT4G36690.3 ATU2AF65A; RNA binding similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to transposon protein, putative, CACTA, En/Spm sub-class, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95281.2); similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumba (GB:CAA77136.1); similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumba (GB:CAA77135.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain U2 snRNP auxilliary factor, large subunit, splicing factor; (InterPro:IPR006529)|similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumba (GB:CAA77136.1); similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumba (GB:CAA77135.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain U2 snRNP auxilliary factor, large subunit, splicing factor; (InterPro:IPR006529)|similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60900.1); similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumba (GB:CAA77136.1); similar to U2 snRNP auxiliary factor, large subunit [Nicotiana plumba (GB:CAA77135.1); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain U2 snRNP auxilliary factor, large subunit, splicing factor; (InterPro:IPR006529) 0.00950853246243799 0.086922810099398 0.932769586018314 1 0.775391793893689 17.9078051642713 0.00950853246243799 0.124553013400512
AT4G03070_at 3.74183172654031 4.40535020930363 4.42470880400452 4.50262795794462 5.3130754702891 5.38284024154501 6.90513186754866 6.65089200318502 4.51176461582255 4.88563797245863 5.77546475715945 5.54292918126726 6.45113997692576 6.01741480533272 5.12338333192228 4.93176657330288 4.99049618047079 5.25094413233397 5.51708430262799 0.217998816284022 0.208779882985749 0.214712529082738 0.213102642657187 0.210557669966429 0.21684336772418 0.228702322907732 0.221487712046341 0.216808927600326 0.209918747218412 0.217252734801166 0.206749372456319 0.205726239567054 0.205726239567054 0.21276918220413 0.205726239567054 0.227345807470692 0.210290138597442 0.209885932776747 4 4|0 +|/ 1358966 1359580 1359293.5 1358432 1359698 + gene protein_coding_gene FALSE TRUE AT4G03070.1 AOP1 (2-oxoglutarate?dependent dioxygenase 1.1); oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2. similar to 2-oxoglutarate-dependent dioxygenase, putative [Arabidopsis thaliana] (TAIR:AT1G52820.1); similar to Immunoglobulin/major histocompatibility complex; 2OG-Fe(II) oxygenase [Medicago truncatula] (GB:ABD33293.1); contains InterPro domain Isopenicillin N synthase; (InterPro:IPR002283); contains InterPro domain 2OG-Fe(II) oxygenase; (InterPro:IPR005123) 0.00947920191887186 0.0867675427284367 0.932889340510107 1 0.775377654050493 10.4067762838663 0.00947920191887186 0.124290505635383
AT1G18070_at 8.48589041345486 8.7792033529586 8.66777330574978 8.77008132412895 8.63463807733654 8.18522104542622 9.38907125081855 9.2918567637525 8.55052155622211 8.366746172469 8.79078198517627 8.94446438341352 8.667811827359 8.79773241898213 8.96243908778612 8.94817096959643 8.50248880052805 8.50554817079338 8.16046825236863 0.155040292798574 0.157898272078759 0.162621370168583 0.160372096162482 0.155040292798574 0.171142552613588 0.159376316732086 0.158773231939854 0.163056442334940 0.158902754299831 0.155040292798574 0.155236556827773 0.157819975902399 0.155040292798574 0.16300084076163 0.155456021697593 0.164808625446685 0.162322322321971 0.161823640570509 1 1|0 -|/ 6214240 6215254 6214794.875 6213718 6218328 - gene protein_coding_gene FALSE TRUE AT1G18070.1|AT1G18070.2 EF-1-alpha-related GTP-binding protein, putative|translation factor, nucleic acid binding similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT5G60390.1); similar to calmodulin binding / translation elongation factor [Arabidopsis thaliana] (TAIR:AT1G07940.2); similar to elongation factor 1-alpha / EF-1-alpha [Arabidopsis thaliana] (TAIR:AT1G07920.1); similar to EF-1-alpha-related GTP-binding protein (GB:AAA79032.1); similar to Os04g0270100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052341.1); similar to SUP2 gene product (GB:AAA79033.1); contains InterPro domain Elongation factor Tu, C-terminal; (InterPro:IPR004160); contains InterPro domain Yeast eukaryotic release factor; (InterPro:IPR003285); contains InterPro domain Translation factor; (InterPro:IPR009000); contains InterPro domain Elongation factor Tu, domain 2; (InterPro:IPR004161); contains InterPro domain EF-Tu/eEF-1alpha/eIF2-gamma, C-terminal; (InterPro:IPR009001); contains InterPro domain Protein synthesis factor, GTP-binding; (InterPro:IPR000795) -0.00819631432565093 -0.0865412616927051 0.93306386959273 1 0.775357092337332 17.3375544579404 -0.00819631432565093 0.0960298614306451
AT3G22740_at 8.32173177876584 8.40129099040439 6.79605842971761 7.19960407386603 8.32749427306387 7.36421055269342 6.21954809642472 6.11649797124803 3.14587450794863 7.14194589884355 4.73457304485143 2.95228262716232 5.71847602814103 5.08861306388655 2.45728427683342 5.08194606191778 6.60822361187801 4.94597387105446 4.3521203254034 0.271565570497540 0.277369949124051 0.285172192589442 0.273563512359033 0.271959496700299 0.287721751443002 0.269240783780467 0.269240783780467 0.283909920266328 0.269366346225364 0.274231524922652 0.277815586807484 0.273380771418547 0.278909535062212 0.296951782398987 0.269240783780467 0.270569971798615 0.285464597026037 0.269240783780467 3 3|0 -|/ 8033221 8034096 8033537.556 8032966 8035816 - gene protein_coding_gene FALSE TRUE AT3G22740.1 HMT3 (Homocysteine S-methyltransferase 3); homocysteine S-methyltransferase homocysteine S-methyltransferase (HMT3) Identical to Homocysteine S-methyltransferase 3 (EC 2.1.1.10) (S- methylmethionine:homocysteine methyltransferase 3) (SMM:Hcy S- methyltransferase 3) (AtHMT-3) (HMT3) [Arabidopsis Thaliana] (GB:Q8LAX0;GB:Q9LUI7); similar to ATHMT-2/HMT-2, homocysteine S-methyltransferase [Arabidopsis thaliana] (TAIR:AT3G63250.1); similar to selenocysteine methyltransferase [Camellia sinensis] (GB:ABF47292.1); contains InterPro domain Homocysteine S-methyltransferase; (InterPro:IPR003726) -0.0122420238625410 -0.085760331763182 0.93366622502729 1 0.775286542398572 12.1325054294134 -0.0122420238625410 0.182136528082015
AT3G51510_at 10.4957251235734 10.6309550739691 10.5646818093169 10.4654936064781 10.7521767175204 10.6749277272913 10.9665992756830 11.3181379839206 11.0768346823796 10.9155815893131 11.4363409186774 11.1171436214435 11.2114176354684 11.3559883431914 11.1278977099279 11.281764555372 10.7719931897277 11.2703247461523 10.8394484957002 0.0663451993823162 0.0659641067065873 0.0686651038306959 0.0670906720110792 0.0661450065958939 0.069370709683449 0.067392139430302 0.0684480251764044 0.0678789277294417 0.065281666368681 0.065281666368681 0.065281666368681 0.0672430525851125 0.0713340056338575 0.0672134706639919 0.065281666368681 0.0779529676439434 0.0652947297027743 0.0658720335845208 3 3|0 +|/ 19120110 19120625 19120324.111 19120041 19121030 + gene protein_coding_gene FALSE TRUE AT3G51510.1 similar to unknown [Hordeum vulgare] (GB:ABK56720.1) 0.00705975919798529 0.0854425465803845 0.933911355513707 1 0.775258016116694 21.8038690459488 0.00705975919798529 0.0687164985210354
AT3G18230_at 4.97353272753132 5.52451242657018 4.69862024011375 5.31261377526649 6.00626224699192 5.86061736753454 4.25878406404674 4.22070944375381 5.06614907950276 4.43838772142436 3.93817196090913 3.57247052741637 4.211954787229 4.36944583069436 3.59750559604363 4.21490343464368 4.52457633544007 4.63198095545322 5.00731711777965 0.217474904711636 0.215077406254612 0.210552482195455 0.216464905392029 0.211966878107542 0.22626709098106 0.218425376585865 0.214648049934025 0.231861508448365 0.220690210739232 0.215685830830192 0.213626051328771 0.210552482195455 0.228343795140442 0.218760063745407 0.211703004744012 0.217788864375875 0.210552482195455 0.210552482195455 3 3 + 6253410 6253949 6253654 6251489 6254227 + gene protein_coding_gene FALSE TRUE AT3G18230.1 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein similar to octicosapeptide/Phox/Bem1p (PB1) domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G01190.1); similar to unnamed protein product; contains similarity to unknown protein gb|AAD14519.1 gene_id:MIE15.2 [Medicago truncatula] (GB:ABE90805.1); contains InterPro domain Octicosapeptide/Phox/Bem1p; (InterPro:IPR000270) 0.0102426404554604 0.0847459175379329 0.934448741419775 1 0.775195852409799 9.5919119454999 0.0102426404554604 0.145121457502581
AT1G72770_at 7.51158978557543 6.94226786170492 8.94871148177136 8.50679995014856 7.98333015686123 7.36584533644652 9.14221724079524 8.27985694752972 8.07349687842476 8.45874829388564 7.73929463727717 7.6406758586028 8.4669919868931 7.99617409143683 7.40867169575631 8.80752563506797 8.94537464613465 7.84941132009813 8.39963411744264 0.173356356359639 0.170353678347300 0.170182144058934 0.172389162336027 0.162457972420914 0.174665512832676 0.167752657128229 0.171089635051012 0.165512606975319 0.165149054024888 0.170796265550350 0.165865249212283 0.163718246330893 0.171516430227683 0.174508869691196 0.162056084835218 0.165986796137731 0.168273787768152 0.161944983547387 1 1|0 +|/ 27395718 27396381 27396054.7 27393720 27396943 + gene protein_coding_gene FALSE TRUE AT1G72770.1|AT1G72770.2 HAB1 (HOMOLOGY TO ABI1); protein phosphatase type 2C|HAB1 (HOMOLOGY TO ABI1) mutant has ABA hypersensitive inhibition of seed germination; Protein Phosphatase 2C similar to HAB2 (Homology to ABI2), protein phosphatase type 2C [Arabidopsis thaliana] (TAIR:AT1G17550.1); similar to Os05g0592800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056498.1); similar to putative protein phosphatase 2C [Oryza sativa (japonica cultivar-group)] (GB:AAT39223.1); similar to Os01g0583100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043415.1); contains InterPro domain Protein phosphatase 2C; (InterPro:IPR000222); contains InterPro domain Protein phosphatase 2C-like; (InterPro:IPR001932) 0.0141636631981419 0.0845979844357293 0.93456286292081 1 0.775182716986406 16.2937730520171 0.0141636631981419 0.221912903961171
AT2G21390_at 9.27555259981629 9.27324851711929 9.16769670892768 9.27308115517747 8.99187080446277 8.97852515838776 9.0472056699816 9.13317341443977 9.29205380260964 9.05347627313485 9.29841999473143 9.28804273746749 9.0545862798372 9.12178224579079 9.37157118608855 9.05508755458671 8.89221434443233 9.21212836985424 8.93632461266325 0.108520348206014 0.101255985223985 0.101879370780377 0.105402659396299 0.103209301628273 0.112156120962654 0.100429010173047 0.106829856341471 0.107587095951612 0.105444643099016 0.097290012063495 0.098544945653199 0.0986038773065861 0.104489021883179 0.099104101338074 0.100815627080618 0.110130451544448 0.107936643050849 0.102438318549776 2 2 + 9163086 9163597 9163380.818 9159086 9163958 + gene protein_coding_gene FALSE TRUE AT2G21390.1 coatomer protein complex, subunit alpha, putative similar to coatomer protein complex, subunit alpha, putative [Arabidopsis thaliana] (TAIR:AT1G62020.1); similar to coatomer alpha subunit-like protein [Lotus japonicus] (GB:CAE45585.1); similar to Coatomer WD associated re (GB:ABE89536.1); similar to coatomer alpha subunit [Hordeum vulgare subsp. vulgare] (GB:AAS58474.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain Coatomer alpha subunit, C-terminal; (InterPro:IPR010714); contains InterPro domain Coatomer WD associated region; (InterPro:IPR006692) -0.00586203365215066 -0.0842200444993384 0.934854428121298 1 0.775149262590088 18.2703845794897 -0.00586203365215066 0.0236520524757727
AT2G39890_at 6.73152604412119 7.13103780267761 7.10366111900446 7.14237969028285 7.98370676345154 7.71271155211628 8.30011994586522 7.92081972812192 7.74051383453517 8.15705296275514 8.55497955492934 7.90176565397733 7.62688500189514 8.1745402044672 8.05312212405852 7.94239374460499 7.7934161476071 8.16378110860583 8.12619484081522 0.199377670450537 0.170498053916487 0.183233984443536 0.179048407046447 0.168551235132693 0.184372264340343 0.168253986937489 0.174443037271024 0.189286356658842 0.172570356774102 0.171043236505852 0.175596277939789 0.179855585926386 0.179276628178036 0.174412026414017 0.169578490538904 0.181012461068298 0.17724716070848 0.168253986937489 2 2|0 +|/ 16664702 16665232 16664967.4 16662706 16665409 + gene protein_coding_gene FALSE TRUE AT2G39890.1|AT2G39890.2 ProT1 (PROLINE TRANSPORTER 1); amino acid permease|ProT1 (PROLINE TRANSPORTER 1) Encodes a proline transporter with affinity for gly betaine, proline and GABA. Protein is expressed in the vascular tissue, specifically the phloem. similar to ProT3 (PROLINE TRANSPORTER 3), amino acid permease [Arabidopsis thaliana] (TAIR:AT2G36590.1); similar to ProT2 (PROLINE TRANSPORTER 2), amino acid permease [Arabidopsis thaliana] (TAIR:AT3G55740.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93109.1); similar to Os07g0100800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058673.1); similar to betaine/proline transporter [Avicennia marina] (GB:BAB93110.1); contains InterPro domain Amino acid/polyamine transporter II; (InterPro:IPR002422); contains InterPro domain Amino acid transporter, transmembrane; (InterPro:IPR013057) -0.00841060124985105 -0.084210042856536 0.93486214412073 1 0.775148379297885 15.5203858249818 -0.00841060124985105 0.106455464040360
AT1G19485_at 5.9464063369872 5.58107061104736 5.69644378896102 5.48661853690944 6.57925410121137 6.06180908826478 5.99440846642498 5.50808029786567 5.60980159051964 5.70884960080052 5.46851896915595 5.94042617713396 5.75558432367763 5.45803341321146 5.46489255784561 6.11944141987013 6.06161565978878 5.10639670723656 6.35293752298945 0.180416577748614 0.175314818056318 0.1774574167695 0.176665979701387 0.179322039979903 0.179942836451267 0.179484501503276 0.186909126731240 0.19087919615844 0.177175388342596 0.183872031283917 0.174677328549473 0.174663242761946 0.174841129689483 0.174663242761946 0.178894290652829 0.181167724222553 0.183771301287564 0.180395488419149 1 1|0 +|/ 6750780 6751394 6751061 6746803 6751498 + gene protein_coding_gene FALSE TRUE AT1G19485.1 AT hook motif-containing protein similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84427.1); similar to Os07g0454400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059556.1); similar to Os01g0858000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044858.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) -0.0100629835955874 -0.0841459668758144 0.934911577195278 1 0.775142722930477 11.6379580159223 -0.0100629835955874 0.142889220521588
AT3G03040_at 5.71591363798196 5.83529645502743 5.45324615343804 5.26491601011749 6.4743431709361 6.04981885613623 5.57688633153617 5.17850867947926 5.25471730965048 5.32698093025866 5.36627015363018 5.03768625843384 5.33421318591201 5.23837064567588 5.27483169784853 5.83734864399898 4.97200266719858 5.36048719908374 5.97793611079807 0.211941011935743 0.210832947106630 0.212346415810117 0.210355718900837 0.209950904911272 0.219084691445248 0.212289751538785 0.214949850858264 0.221410786673401 0.213591681184259 0.213616448014272 0.207548483875178 0.210058569631888 0.218142238050009 0.217292574504090 0.209057418289389 0.226063897859489 0.212896244355220 0.218092269697604 3 3|0 +|/ 685525 686185 685785.125 684692 686284 + gene protein_coding_gene FALSE TRUE AT3G03040.1 F-box family protein similar to F-box family protein [Arabidopsis thaliana] (TAIR:AT3G03030.1); similar to Cyclin-like F-box [Medicago truncatula] (GB:ABE93480.1); contains InterPro domain FBD-like; (InterPro:IPR006566); contains InterPro domain Cyclin-like F-box; (InterPro:IPR001810); contains InterPro domain Leucine-rich repeat 2; (InterPro:IPR013101) 0.00835148061053748 0.0830132013195387 0.935785527512781 1 0.775043436601618 11.1048808735191 0.00835148061053748 0.107884857302876
ATCG00790_at 11.2133642522495 10.1615301644858 11.3907629841868 9.79168016374364 11.8203983244753 9.4735977654521 11.9030920010076 10.0690584121120 13.6044074730687 13.4843997465971 14.0246426550633 14.2290230472275 13.361504776981 13.5840131329774 13.9642472359775 13.6687344982706 12.9896034219889 13.3282659761318 12.9836223282987 0.100660197978783 0.104261909319948 0.097881336222554 0.115846917556667 0.0970745769595563 0.109108280463696 0.0969537721462626 0.113135292456756 0.0991591126618485 0.0982083133582 0.0988646929690683 0.100567171630331 0.098497013872518 0.103585918611415 0.101574102378126 0.0980253924873863 0.105915866408778 0.0969537721462626 0.0969537721462626 C C - 81254 81519 81409.727 81189 82652 - gene protein_coding_gene FALSE TRUE ATCG00790.1 chloroplast gene encoding a ribosomal protein L16, which is a constituent of 50S large ribosomal subunit Identical to Chloroplast 50S ribosomal protein L16 (rpl16) [Arabidopsis Thaliana] (GB:P56793); similar to structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT2G28820.1); similar to ribosomal protein L16 [Vitis vinifera] (GB:YP_567115.1); contains InterPro domain Ribosomal protein L16; (InterPro:IPR000114) 0.0343132145448912 0.0801350611620653 0.938006478254453 1 0.774797211862103 24.2285509379968 0.0343132145448912 0.612686171035151
AT3G24315_at 7.20594965734231 7.67435139107586 7.07102062250856 7.21867255921272 7.55070328487443 7.67537399339188 6.82440538444357 6.97884522125436 7.5028395777348 6.96949637401791 7.01088546339475 6.99689430510688 6.88980181964563 7.37677486770352 7.11259350778669 7.21736008243117 6.7969837710385 7.0378177048472 7.27322521807515 0.190362039971503 0.181050093514315 0.184848075462939 0.182771530253192 0.180991660421264 0.193990254692897 0.181029634941204 0.184552507996625 0.186261070460013 0.187283882488035 0.182440547688537 0.180991660421264 0.190781429178136 0.181444307585500 0.183977305714451 0.183457174144549 0.190033363285864 0.191405375809084 0.189650753217248 3 3|0 -|/ 8820618 8821585 8820962.667 8820462 8822810 - gene protein_coding_gene FALSE TRUE AT3G24315.1 sec20 family protein similar to Sec20 [Medicago truncatula] (GB:ABE93741.1); similar to Os02g0658900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047639.1); contains InterPro domain Sec20; (InterPro:IPR005606) 0.00721162588477164 0.0778547285350648 0.939766531517413 1 0.774608287795476 14.4266199293564 0.00721162588477164 0.0916692830734778
AT4G00710_at 8.91666791516779 8.73126451350168 8.76993304726908 8.4541085999859 8.9235305840392 8.77815711034939 8.80158989550118 8.50263560784835 9.04119670048405 8.74756365583276 8.8253395361592 8.82134245350123 8.95376127356824 8.82648678154006 8.73815252410563 8.97333986954953 8.79676155639628 8.96196263632144 8.81962531729618 0.0993398994742362 0.0973225796255694 0.103429610810882 0.103042019010134 0.0968206386655105 0.105174096279449 0.0968080997453743 0.111820587705474 0.105037946644862 0.103862300455794 0.098128562040618 0.096383643210744 0.103141516944325 0.0972029306695112 0.100445461759963 0.096538447456561 0.105523148135838 0.0974160614019976 0.103795346510316 4 4 + 292235 292992 292701.545 290048 293453 + gene protein_coding_gene FALSE TRUE AT4G00710.1 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G41260.1); similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT1G01740.1); similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT5G59010.1); similar to Protein kinase [Medicago truncatula] (GB:ABE82930.1); similar to Protein kinase [Medicago truncatula] (GB:ABE92129.1); similar to H0913C04.1 [Oryza sativa (indica cultivar-group)] (GB:CAJ86160.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.00696285495274451 -0.077522260230679 0.940023173477691 1 0.774581197838542 17.6005385192563 -0.00696285495274451 0.0855923916286866
AT3G06850_at 5.8375433855118 6.2369995652553 5.68828601859693 5.93054523300717 5.87732780923901 5.88674521982189 5.72172624633441 5.51421140928479 5.89804626872286 6.32687941596244 6.06045584306049 6.4822773430679 6.09638036770231 5.75690924526459 6.5890992550842 6.39554945321563 5.94551290750992 5.89954150077022 6.24710310549782 0.193083479329138 0.194603865965289 0.206568549085139 0.204166956246377 0.195441117987624 0.207242968662501 0.207323676551297 0.192559083012135 0.208406706834346 0.192559083012135 0.200835316689215 0.193746592901848 0.192918726665699 0.203555783355142 0.195936643551425 0.194133812486256 0.199382851535946 0.197622863450474 0.192559083012135 3 3 - 2158227 2158968 2158640.636 2157980 2160629 - gene protein_coding_gene FALSE TRUE AT3G06850.1|AT3G06850.2 DIN3/LTA1 (DARK INDUCIBLE 3); alpha-ketoacid dehydrogenase dihydrolipoamide branched chain acyltransferase similar to dihydrolipoyllysine-residue acetyltransferase [Arabidopsis thaliana] (TAIR:AT1G54220.2); similar to dihydrolipoyl transacylase [Dictyostelium discoideum AX4] (GB:XP_640524.1); similar to Os01g0314100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001042870.1); contains InterPro domain 2-oxo acid dehydrogenase, lipoyl-binding site; (InterPro:IPR003016); contains InterPro domain Biotin/lipoyl attachment; (InterPro:IPR000089); contains InterPro domain Single hybrid motif; (InterPro:IPR011053); contains InterPro domain E3 binding; (InterPro:IPR004167); contains InterPro domain Catalytic domain of components of various dehydrogenase complexes; (InterPro:IPR001078) 0.00698936398402195 0.0766882580340767 0.940666996527225 1 0.774513751635865 11.9919524456416 0.00698936398402195 0.0884791555280764
AT1G78630_at 11.3004100036600 11.0505134541781 10.6141435120868 10.5237066572352 11.2021190806255 11.0068910492678 11.3756103824207 11.1617111394226 11.3616236444535 11.4247478797036 11.8387349333513 12.0755967798115 11.5423331967803 11.6192794806621 12.3751195270388 11.5921330910735 11.4849092320436 11.6282000158852 11.4038807490202 0.0618900696399995 0.0599503627830682 0.0622672469807484 0.0612118176805327 0.0609402559781434 0.061041244474566 0.0627257191663472 0.0635921819562767 0.0639701350509007 0.0645180163278162 0.0601604010127413 0.0599503627830682 0.0624043038966123 0.0641949155538078 0.0599503627830682 0.0605055530377302 0.0641297806440668 0.0610773459607413 0.0619747612170162 1 1|0 +|/ 29581058 29582244 29581708.778 29580849 29582551 + gene protein_coding_gene FALSE TRUE AT1G78630.1 EMB1473 (EMBRYO DEFECTIVE 1473); structural constituent of ribosome Identical to 50S ribosomal protein L13, chloroplast precursor (CL13) (RPL13) [Arabidopsis Thaliana] (GB:Q9SYL9); similar to ribosomal protein L13 family protein [Arabidopsis thaliana] (TAIR:AT3G01790.2); similar to 50S ribosomal protein L13, chloroplast precursor (CL13) (GB:P12629); contains InterPro domain Ribosomal protein L13; (InterPro:IPR005822); contains InterPro domain Ribosomal protein L13, bacterial and organelle form; (InterPro:IPR005823) -0.00627932288075539 -0.0762506811297506 0.941004810367092 1 0.774478655917015 22.6125326797654 -0.00627932288075539 0.0680203855822274
AT1G30480_at 5.88635303913807 6.37232921157438 6.00057644113626 6.20740030514972 6.03042723704644 6.3537280706437 5.75021336624038 6.49064813153704 4.89153371102707 5.73530941675542 5.57385432287505 5.5413926874922 5.77805768626123 5.24796300966786 5.14122891922772 5.41960843897645 4.85773420345116 5.01419511094996 5.4686931063121 0.208892276054963 0.215685738519664 0.206726143571769 0.204700005738260 0.207356061593314 0.222413863368259 0.207335222260066 0.208373887284067 0.212529273910042 0.203227208941784 0.205620568969779 0.203817679447908 0.205314102351109 0.220964857553304 0.210816150926867 0.204594782432239 0.221270940963297 0.209988490188661 0.213038017414418 1 1 + 10790862 10792372 10791683.818 10790004 10792557 + gene protein_coding_gene FALSE TRUE AT1G30480.1 DRT111 (DNA-damage-repair/toleration protein 111); nucleic acid binding / nucleotide binding recombination and DNA-damage resistance protein (DRT111) Identical to DNA-damage-repair/toleration protein DRT111, chloroplast precursor (DRT111) [Arabidopsis Thaliana] (GB:P42698;GB:Q9S9Q1); similar to U2 snRNP auxiliary factor large subunit, putative [Arabidopsis thaliana] (TAIR:AT1G60830.1); similar to putative DNA-damage repair protein DRT111 precursor [Oryza sativa (japonica cultivar-group)] (GB:BAB91997.1); contains InterPro domain RNA recognition, region 1; (InterPro:IPR003954); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain D111/G-patch; (InterPro:IPR000467); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) -0.0101386854819623 -0.0758509436884381 0.941313422773717 1 0.774446770370611 11.4799259963387 -0.0101386854819623 0.167041772532664
AFFX-DapX-M_at 7.79642214125219 8.05180071331404 8.9150842949925 7.87309457655354 9.50812751220875 7.75284223385551 9.68277500884358 8.04546452455027 9.52614107320534 9.90259739951045 9.89054034127404 10.0913586794679 9.61982681298137 9.72195307083515 9.4222910650766 9.98353787134561 9.3371440927695 8.99228042380258 9.96832658542185 0.126325781402873 0.120309370893877 0.120047724513927 0.120854377937841 0.113995527476098 0.123277249431628 0.116578750688039 0.117039529917681 0.125988596801227 0.115927572798455 0.113968728805928 0.113129944602170 0.115300511664856 0.115628234539039 0.113397695248546 0.113954690650881 0.121607958540653 0.121596343995462 0.114268168423763 NA NA NA NA NA FALSE FALSE -0.0242417919696163 -0.0754725577740347 0.941605560636677 1 0.774416742138477 18.1688954910663 -0.0242417919696163 0.454997960778353
AT4G17890_at 7.71616150309556 7.94683193532053 7.00878828848471 7.63321993168585 8.35099876610907 8.06355518017987 8.37839237412005 8.47068509211094 7.99632031408126 8.31243792295104 8.84475059882129 8.79120886773423 8.35812433583284 8.5716468953666 8.68458199885742 8.47186865864554 8.14678214143507 8.65637113738462 8.24696073085875 0.153928044077959 0.144726015395892 0.170828263062864 0.151616789791956 0.14149231972685 0.144909824172110 0.147997387237953 0.145152371663079 0.160248750564021 0.151374705791660 0.153020526277562 0.145812874423869 0.145868544894221 0.147202682664111 0.149098717092220 0.14218085696365 0.164907178107727 0.147066630826182 0.145619929843972 4 4|0 +|/ 9938344 9939108 9938685.9 9937035 9939506 + gene protein_coding_gene FALSE TRUE AT4G17890.1|AT4G17890.2 UBP20 (UBIQUITIN-SPECIFIC PROTEASE 20); DNA binding A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.| similar to AGD8 (ARF-GAP DOMAIN 8), DNA binding [Arabidopsis thaliana] (TAIR:AT5G46750.1); similar to Os03g0854100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051935.1); similar to Os10g0574800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065477.1); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAW39027.1); contains InterPro domain Arf GTPase activating protein; (InterPro:IPR001164) 0.0082749943745608 0.0749242240046677 0.942028925538958 1 0.774373493166211 16.3215323765 0.0082749943745608 0.126491652922968
AT3G62600_at 10.3262333104365 10.3019135884272 10.7365351590557 10.6439132012807 9.7017336452329 9.58303838281013 8.92632166103465 8.8884517246139 9.16891311331483 8.77831162672509 7.93420611769669 8.6878849013778 8.09038443492537 8.16348826917241 8.50679386249938 8.32433988073205 8.04855915595414 8.50657318614876 8.53637980365376 0.126538102037985 0.127796223051053 0.128113929662806 0.126554948114125 0.124506602199231 0.127750143420254 0.123189933081214 0.123189933081214 0.130934149574305 0.12681608643512 0.129239462108749 0.124805896769786 0.135479193002694 0.132293006968301 0.128869237603161 0.124538176885345 0.136736398005663 0.124167189023351 0.124549083258022 3 3|0 -|/ 23162079 23163014 23162461.778 23161766 23164486 - gene protein_coding_gene FALSE TRUE AT3G62600.1 DNAJ heat shock family protein similar to ATJ3 (Arabidopsis thaliana DnaJ homologue 3) [Arabidopsis thaliana] (TAIR:AT3G44110.1); similar to Heat shock protein DnaJ, N-terminal [Medicago truncatula] (GB:ABE90994.1); contains InterPro domain HSP40/DnaJ peptide-binding; (InterPro:IPR008971); contains InterPro domain Chaperone DnaJ, C-terminal; (InterPro:IPR002939); contains InterPro domain Heat shock protein DnaJ; (InterPro:IPR003095); contains InterPro domain Heat shock protein DnaJ, N-terminal; (InterPro:IPR001623) 0.00524278539944545 0.0746653113531025 0.942228837066266 1 0.774353181288798 18.4438410377587 0.00524278539944545 0.0271938064279779
AT2G42610_at 6.25925547503214 6.14205216062182 4.28662785134846 4.13459172868844 4.79024336271366 5.88436724019064 5.34968050725263 5.94261782786227 3.65203175711557 5.87458579615599 6.37251053067866 6.8693304144711 5.89364648784204 6.92979003503924 7.06018439411273 5.09758348085336 6.38080233833202 7.41621855317932 6.45993607146694 0.196060590359003 0.194188419332620 0.203376966289029 0.202421863406623 0.200758893020644 0.197726956715988 0.195469221140259 0.201371575722010 0.236371297201926 0.190432946578714 0.189758661782676 0.197590285889611 0.192631031478970 0.190089462653829 0.195453472670772 0.198882400008816 0.196827578334808 0.211414203804105 0.189758661782676 2 2 + 17755120 17755543 17755298.818 17754994 17757517 + gene protein_coding_gene FALSE TRUE AT2G42610.1|AT2G42610.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G07090.1); similar to Protein of unknown function DUF640 [Medicago truncatula] (GB:ABE92798.1); contains InterPro domain Protein of unknown function DUF640; (InterPro:IPR006936) 0.0121065620552392 0.0734183725345106 0.943191683205774 1 0.774256341448189 11.2643592629936 0.0121065620552392 0.217906906470409
AT2G41090_at 13.3701433831009 13.4552310560652 13.3767865305462 13.3520298319919 13.1004337110565 12.7697294839096 13.1663411332122 13.0247406057421 13.2195422224602 12.6884901949889 12.9719690840922 13.2539325236558 12.7836745672992 13.0300093704276 12.7410830246670 12.7517457619939 12.8429350540274 13.4677060442066 12.7554414897951 0.0779095611880182 0.0766496384290199 0.0775142570718274 0.0808929937229639 0.0762334399823965 0.0827923037407108 0.0762334399823965 0.0782650921892604 0.0861563681673643 0.0768025597611378 0.0788469935792297 0.0769832469534042 0.0770776397988254 0.0762334399823965 0.0764066115021245 0.077190315947026 0.0821139171423765 0.0812214524150516 0.0774302433041993 2 2 + 17142940 17143633 17143288 17142799 17143930 + gene protein_coding_gene FALSE TRUE AT2G41090.1 calmodulin-like calcium-binding protein, 22 kDa (CaBP-22) Identical to 22 kDa calmodulin-like calcium-binding protein (CABP-22) [Arabidopsis Thaliana] (GB:P30187); similar to CAM2 (CALMODULIN-2), calcium ion binding [Arabidopsis thaliana] (TAIR:AT2G27030.3); similar to calmodulin [Ae (GB:AAX31386.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.0059059310529701 -0.0730518999959671 0.943474680358039 1 0.77422819010139 26.1360327492252 -0.0059059310529701 0.0641164146428129
AT2G44310_at 10.1629645990341 10.3676457408265 10.0542842677289 10.0799423327065 10.0814303503363 9.89795507928013 10.1872075709673 10.4489708489664 9.67432285506679 10.0336994059552 9.95173583079206 10.3088194509621 9.87985918654948 10.0075349633403 10.2065856002800 9.96030840355759 9.91599207138086 10.0938127702847 9.65945236479383 0.086989064604843 0.086989064604843 0.096919969789696 0.0899088191044063 0.0899216862509222 0.0925463620728758 0.092554329966619 0.0924790993532715 0.109806567986180 0.0873846747880983 0.0943898891126423 0.086989064604843 0.087919981635416 0.091132842092413 0.0890915208635563 0.0884633338658695 0.0948469795783226 0.086989064604843 0.0907013356750285 2 2 + 18316388 18316682 18316534.091 18316288 18316902 + gene protein_coding_gene FALSE TRUE AT2G44310.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G54530.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:AAO37499.1); similar to Os03g0411300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001050348.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) -0.00593567819875562 -0.0728289152321557 0.943646877636116 1 0.774211129906529 20.0749197203551 -0.00593567819875562 0.0658372122677876
AT4G28390_at 8.23375366432404 8.34380113706675 9.57426866057666 9.67936724655364 9.11701068564793 8.76753627326061 7.50377301514861 7.63101677406286 7.97276560649813 7.24028063122106 5.98299714156975 5.2387291618189 6.13129835924517 6.64953099320276 5.23922358054738 7.29434243456374 6.02604584628265 5.99731086161902 7.10194292387203 0.219865966275696 0.219865966275696 0.225239782237944 0.223874089916774 0.222835864632656 0.226474590602721 0.226164690033431 0.222875709898684 0.236309328917690 0.229311038016375 0.230986863763078 0.225082185794256 0.226547137174972 0.236068394422422 0.235491493016005 0.228617165973808 0.230337572569606 0.225869047086854 0.221110159330710 4 4|0 -|/ 14041519 14042099 14041821.8 14041294 14043284 - gene protein_coding_gene FALSE TRUE AT4G28390.1 AAC3 (ADP/ATP CARRIER 3); ATP:ADP antiporter/ binding Encodes a mitochondrial ADP/ATP carrier protein. Shown in heterologous systems to be located in the plasma membrane. Has comparable affinity for ADP and ATP (in E.coli). similar to AAC2 (ADP/ATP CARRIER 2), binding [Arabidopsis thaliana] (TAIR:AT5G13490.2); similar to AAC1 (ADP/ATP CARRIER 1), binding [Arabidopsis thaliana] (TAIR:AT3G08580.2); similar to putative ADP,ATP carrier-like protein [Trifolium pratense] (GB:BAE71236.1); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) -0.00596767715754787 -0.0719398229849649 0.944333499336184 1 0.774143624795891 15.3604481910234 -0.00596767715754787 0.0695411716416809
AT4G28300_at 8.6391412464199 8.7258046976326 8.58845838667555 8.78533508411926 9.02985849641572 8.89068826031725 8.40463146237316 8.2865944792355 8.25733846444172 8.23594204505465 7.94931616000478 7.43374218434445 8.242587286928 7.72530071587166 7.29160340072192 8.16014914240527 8.31757820520951 8.07628089790644 8.16622310434275 0.141107555795024 0.141107555795024 0.142531830909261 0.149438593939079 0.147020810633086 0.141107555795024 0.146313291889580 0.141369250390213 0.150709190303459 0.141107555795024 0.147436314858395 0.149846701888886 0.141107555795024 0.157113459054892 0.154084884227153 0.14883549092767 0.151048525684651 0.143412999186102 0.152378973399826 4 4 + 14016238 14016793 14016500.545 14014659 14017074 + gene protein_coding_gene FALSE TRUE AT4G28300.1|AT4G28300.2 hydroxyproline-rich glycoprotein family protein Encodes a protein with 13.6% proline amino acids that is predicted to localize to the cell wall. similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to Os05g0169400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054762.1); similar to Os01g0754500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044280.1); similar to vegetative cell wall protein gp1 -like [Oryza sativa (japonica cultivar-group)] (GB:BAD68319.1); contains InterPro domain RuvA-like, C-terminal; (InterPro:IPR011132); contains InterPro domain Protein of unknown function DUF1421; (InterPro:IPR010820)|similar to proline-rich family protein [Arabidopsis thaliana] (TAIR:AT5G14540.1); similar to Os05g0169400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054762.1); similar to Os01g0754500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044280.1); similar to vegetative cell wall protein gp1 -like [Oryza sativa (japonica cultivar-group)] (GB:BAD68319.1); contains InterPro domain UBA-like; (InterPro:IPR009060); contains InterPro domain Protein of unknown function DUF1421; (InterPro:IPR010820) -0.00536135165285168 -0.0709311028849725 0.945112565807436 1 0.77406803954452 16.7285161577088 -0.00536135165285168 0.0488161630462005
AT4G27700_at 10.9131619785937 10.7864855417171 10.8684734901684 10.7405799065596 11.2485218846957 10.8572063008748 11.7306014014523 11.4700872474774 11.1395319941396 11.283552092378 11.4126676414552 11.6712997878661 11.3398123499373 11.5229298891733 11.7278979066219 11.3627760405837 11.1651523699173 11.4655796069662 11.1016247267893 0.072160113801463 0.0737440142024002 0.0741786090190801 0.0745761301859609 0.0744540779543803 0.0794491905642824 0.0758613571225952 0.079136768233537 0.0775945545244396 0.073601819694778 0.0745530017440803 0.072160113801463 0.076526871773082 0.0742753902190299 0.0775865387681246 0.073551042840762 0.0829171853687935 0.0757589643838768 0.0758726138989121 4 4|0 -|/ 13826645 13827577 13827139.25 13826380 13827829 - gene protein_coding_gene FALSE TRUE AT4G27700.1 rhodanese-like domain-containing protein similar to rhodanese-like domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G08920.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL52773.1); similar to Os09g0530000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001063746.1); contains InterPro domain Rhodanese-like; (InterPro:IPR001763) -0.00638856771966356 -0.0705830844489118 0.945381365974163 1 0.774042209207845 22.3935984123594 -0.00638856771966356 0.087113593047056
AT2G33255_at 7.63233669688334 7.69443093337185 7.86252382704147 7.85185694856463 8.00367912768502 7.90775372082723 8.56719740592335 8.37203400784882 8.08371379055506 8.21804381473654 8.2729874778907 8.32176924847158 8.12673684998012 8.09522969654614 8.55242468016458 8.33401914512536 8.26981219625686 8.21559395982551 8.0084485100968 0.151277562610079 0.143951307567353 0.146659129903744 0.155466766107245 0.149416058641468 0.149925503612585 0.158730436696008 0.149738302916836 0.172254594437962 0.151287317703852 0.149800636940800 0.147547941381087 0.151979511456185 0.149696022928627 0.148887223866892 0.147149999568438 0.156838490037965 0.149903984332311 0.162891321566196 2 2|0 +|/ 14106012 14107407 14106957.9 14105855 14107670 + gene protein_coding_gene FALSE TRUE AT2G33255.1 hydrolase similar to Os02g0816100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048509.1); similar to haloacid dehalogenase-like hydrolase-like [Oryza sativa (japonica cultivar-group)] (GB:BAD22006.1); contains InterPro domain HAD-superfamily hydrolase, subfamily IA, variant 1; (InterPro:IPR006439); contains InterPro domain Haloacid dehalogenase-like hydrolase; (InterPro:IPR005834) 0.00506163167127749 0.0694656064433903 0.946244525954677 1 0.773960126529697 16.1749634311409 0.00506163167127749 0.039180704138909
AT3G50440_at 9.24782763252745 9.28562985493437 8.2472690975214 8.13670089047023 9.4365431068980 8.79237844807469 8.8046997935578 8.97286886701155 7.82843986789676 8.95551615471123 8.9932863516213 9.26593614596684 9.0693429982941 8.79660666540104 9.45569917605164 8.58429979991251 8.44440557064206 9.11383613132526 8.79489613329318 0.142865079770566 0.144146752085301 0.150904281591740 0.152682638126238 0.145847410080312 0.153544786488252 0.143332715118698 0.140663105895337 0.150841770117640 0.139081027894918 0.139473674190241 0.146098083542607 0.143662275682462 0.142817174637338 0.144080825053220 0.141335374217142 0.149578171944004 0.151509738339231 0.141015220361641 3 3 - 18728397 18729118 18728728.182 18728292 18729475 - gene protein_coding_gene FALSE TRUE AT3G50440.1 hydrolase similar to esterase, putative [Arabidopsis thaliana] (TAIR:AT2G23620.1); similar to salicylic acid-binding protein 2 [Nicotiana tabacum] (GB:AAR87711.1); contains InterPro domain Esterase/lipase/thioesterase; (InterPro:IPR000379); contains InterPro domain Alpha/beta hydrolase fold-1; (InterPro:IPR000073) 0.00730445083404163 0.0693481967182591 0.946335219695762 1 0.773951578324344 17.6113450398089 0.00730445083404163 0.116973084241385
AT4G32330_at 8.7735300096318 9.01769099500711 8.54048654109075 8.62468242406718 9.1125158128737 8.82581795407632 9.33036881547022 9.43177029266752 9.37592085382938 9.56201024561707 10.1807389765426 9.83534404689943 9.61349198975722 9.60595694330322 9.92959075347691 9.66185067740377 9.3407958461721 9.91218091115122 9.2202274863095 0.102417262320984 0.099842255932692 0.106772710760187 0.101459126942890 0.102643330935396 0.103910229096517 0.0983280460927033 0.101525005774394 0.100571764799258 0.107871484248726 0.100731118809328 0.0983280460927033 0.0983280460927033 0.100394839052719 0.108590014404061 0.0994667319306302 0.105202109168658 0.100110364344247 0.101089633943883 4 4 + 15611263 15611839 15611606.273 15608918 15612291 + gene protein_coding_gene FALSE TRUE AT4G32330.1|AT4G32330.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G25480.1); similar to putative BRI1-KD interacting protein [Oryza sativa (japonica cultivar-group)] (GB:BAD15848.1); contains InterPro domain Targeting for Xklp2; (InterPro:IPR009675) 0.00573828050124492 0.0693397930930867 0.946341711150578 1 0.773950967038654 18.5301311706140 0.00573828050124492 0.0690445722587624
AT1G45170_at 5.2777385991529 5.42733079371425 5.70704952910954 5.60428164842582 5.74077910849977 5.74131150536028 5.89705559960385 5.79992999288273 5.05444340920891 5.4486756573809 5.27510310413744 4.93069520089143 5.13777587235909 5.15528551298857 5.11416366282407 5.62965998571527 5.70677208029159 4.77591126028521 5.46733928829731 0.200680551610143 0.200897779875337 0.206848037500414 0.196387691602236 0.199568564923491 0.212222486904047 0.203845714525581 0.205012295209763 0.213212548580951 0.196254115916520 0.204826768473290 0.197132026383732 0.196364796330023 0.197993056288309 0.204671671679587 0.201198053065539 0.198662914673857 0.211444718439476 0.202375962147892 1 1 - 17098701 17100256 17099709.091 17098420 17100446 - gene protein_coding_gene FALSE TRUE AT1G45170.1|AT1G45170.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G42960.1); similar to pore protein of 24 kD (OEP24) [Pisum sativum] (GB:CAA04468.1) -0.00498679092435117 -0.0692703386491455 0.946395362013905 1 0.773945917705659 10.9190130737098 -0.00498679092435117 0.0356226747181395
AT3G57930_at 5.64876609387916 5.51528636170841 5.49287910404635 5.24514369941625 5.71066256793854 5.47591504952806 5.06574026744002 4.74519447573573 6.07551391811905 5.8168516312475 5.8052842288702 5.72165917039226 5.88177451018966 5.8658910473647 5.61855365584739 5.59226448602642 5.52247877072845 5.14698163979046 5.71611898328249 0.197442551811482 0.198892032265229 0.186390619326655 0.189669399735107 0.190523438712158 0.183774594750004 0.193006606904095 0.202409391062782 0.188643874226285 0.187222031465966 0.182865823968196 0.182865823968196 0.188234696884304 0.184601135956306 0.187287137028249 0.186122423593949 0.189284684915063 0.194927836325682 0.188773686746309 3 3 - 21458232 21458607 21458400.636 21458084 21459667 - gene protein_coding_gene FALSE TRUE AT3G57930.1|AT3G57930.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G42190.1); similar to HMG-I and HMG-Y, DNA-binding [Medicago truncatula] (GB:ABE85991.1); contains InterPro domain HMG-I and HMG-Y, DNA-binding; (InterPro:IPR000637) 0.00613469998815663 0.0687642028271773 0.946786340998975 1 0.773909274283002 11.1193763438953 0.00613469998815663 0.0842557061502435
AT2G36530_at 10.9381562310241 11.0548006658604 11.1492758012499 11.0355445012602 10.7690406577307 10.5798137046619 11.2164100084318 11.2182415379262 10.6529245109913 10.8871774883867 11.1153963946398 11.3614045411069 10.8996808178635 10.9152961800112 11.3129194538772 10.7637936141704 10.7271337330058 10.8371182153081 10.7338394545659 0.0773069462814707 0.0773069462814707 0.0780556517697392 0.0779143437284193 0.0779835749916914 0.0819594855885766 0.0773069462814707 0.0834734195586783 0.0876607728348594 0.0820571722919565 0.0790480626913143 0.0783907296757163 0.0785980893006926 0.0797667915577285 0.0829850920839833 0.0784881623358851 0.0845785485481907 0.0808370091360686 0.079621340998793 2 2|0 -|/ 15328162 15329090 15328585.9 15327835 15330948 - gene protein_coding_gene FALSE TRUE AT2G36530.1 LOS2 (Low expression of osmotically responsive genes 1); phosphopyruvate hydratase Involved in light-dependent cold tolerance and encodes an enolase. Identical to Enolase (EC 4.2.1.11) (2-phosphoglycerate dehydratase) (2-phospho-D- glycerate hydro-lyase) (ENO) [Arabidopsis Thaliana] (GB:P25696); similar to enolase, putative [Arabidopsis thaliana] (TAIR:AT1G74030.1); similar to LOS2 [Capsella bursa-pastoris] (GB:AAS66001.1); similar to los [Brassica rapa subsp. chinensis] (GB:ABD92697.1); similar to enolase [Brassica rapa] (GB:AAQ77240.1); contains InterPro domain Enolase; (InterPro:IPR000941) 0.00506446975749619 0.0684917533137527 0.946996808668918 1 0.773889660500333 21.8699470652161 0.00506446975749619 0.0432120396092432
AT2G35450_at 5.49600100614265 5.92525540854142 5.03747325174755 5.11847053394175 5.875003525229 5.6882215970246 6.18480346372372 5.86641897903961 5.19515381237618 5.44996263066134 5.71264775819783 5.63708710152971 5.54029938627872 5.61250578068392 6.1772370470331 5.93736671882135 5.64464688521387 5.76195857017087 5.33783212275527 0.178109433233084 0.171526153276651 0.170200637834807 0.173727230529154 0.171056719067258 0.178763498722859 0.173084804676683 0.172136908724405 0.182881604880852 0.176164648157915 0.169637921682171 0.167758341250670 0.170353626326867 0.173953962567733 0.180816298703986 0.167758341250670 0.172976440497762 0.172048349624213 0.170537510178983 2 2|0 -|/ 14910287 14912390 14911483.053 14910124 14912451 - gene protein_coding_gene FALSE TRUE AT2G35450.1 hydrolase similar to Os04g0391900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052646.1); similar to OSIGBa0145N07.5 [Oryza sativa (indica cultivar-group)] (GB:CAH66449.1); similar to amidohydrolase 2 [Solibacter usitatus Ellin6076] (GB:YP_827743.1); contains InterPro domain Amidohydrolase 2; (InterPro:IPR006992) -0.00650417665794234 -0.0676524792342107 0.947645176723271 1 0.773829729525335 11.1892650596348 -0.00650417665794234 0.098970939688284
AT4G29120_at 9.10157313438589 9.75324707844056 9.33286699686442 9.49484923904817 9.64281217400657 9.38605373259377 9.80199735948165 10.0268828310850 9.32495780253751 9.27055370790125 9.47476913799735 9.51012262832783 9.55300825877702 9.45971987284364 9.1546463356627 9.6795028815604 9.31454153243677 9.53755103313782 9.21098705398935 0.155772425377217 0.150618248209653 0.167658773025751 0.160819518944789 0.147900005560234 0.171784328030373 0.149525699810955 0.156430317746304 0.174099756827356 0.152790448291811 0.153058977178997 0.153570526502757 0.149359054783971 0.158950532124821 0.161080246246274 0.152915935667231 0.179559617121454 0.161812024827394 0.153756144856710 4 4 + 14351327 14351830 14351604.909 14350864 14352065 + gene protein_coding_gene FALSE TRUE AT4G29120.1 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein similar to 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G71180.1); similar to 3-hydroxyisobutyrate dehydrogenase [Blastopirellula marina DSM 3645] (GB:ZP_01089062.1); similar to Os01g0742300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044212.1); contains InterPro domain 6-phosphogluconate dehydrogenase, NAD-binding; (InterPro:IPR006115); contains InterPro domain 6-phosphogluconate dehydrogenase, C-terminal-like; (InterPro:IPR008927); contains InterPro domain Hydroxyacid dehydrogenase/reductase; (InterPro:IPR002204); contains InterPro domain 6-phosphogluconate dehydrogenase; (InterPro:IPR006183) -0.007564854968241 -0.0672043871639763 0.94799136013167 1 0.773798034332306 18.9321931006894 -0.007564854968241 0.130356870046681
AT2G18290_at 8.77984162187176 8.78895181132942 9.01700212952658 8.88865486326256 9.65373008296997 9.07817121067924 9.06644223120777 8.80817715336013 9.30565049845672 8.80919665331436 9.16548349257718 8.32420015662924 8.85367195939613 8.73640618872503 8.62299050864158 8.84260955918815 9.00734133975343 8.88485963228957 9.15419714270192 0.10581957148528 0.107492361759633 0.109685031832348 0.108848966932167 0.110297637710277 0.109170308189666 0.109749432040920 0.108268368152180 0.106784744867334 0.110295418269261 0.119143068087423 0.112983226981235 0.113991652623499 0.109674401724936 0.114369692619916 0.116677381924905 0.109500120074425 0.113647757944977 0.109238203344399 2 2|0 -|/ 7955610 7957154 7956342.111 7955414 7957411 - gene protein_coding_gene FALSE TRUE AT2G18290.1 anaphase-promoting complex, subunit 10 family / APC10 family Identical to Anaphase-promoting complex subunit 10 (APC10) (Cyclosome subunit 10) [Arabidopsis Thaliana] (GB:Q9ZPW2;GB:Q8LBL8); similar to Os05g0579800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056422.1); similar to 10A19I.10 [Oryza sativa (japonica cultivar-group)] (GB:AAD39595.1); similar to putative anaphase promoting complex subunit 10 [Oryza sativa (japonica cultivar-group)] (GB:AAU10698.1); contains InterPro domain Anaphase-promoting complex subunit 10; (InterPro:IPR004939); contains InterPro domain Galactose-binding like; (InterPro:IPR008979) 0.0067751451631779 0.0661492028155186 0.948806611984455 1 0.773724228335329 17.9573097810964 0.0067751451631779 0.111418834264739
AT3G20680_at 6.38381636736944 6.95928798205618 6.30436785113515 6.4592639707327 7.12920069324284 7.33346988882585 6.92684339633112 7.21033522033822 6.88551591818537 7.13216391270391 7.26222619136864 7.21688371801609 7.04394745894138 7.2193103219685 7.22109214342154 7.28168131511429 6.92788137775166 7.18548300639408 7.25895640063958 0.174399221694464 0.170376227992902 0.177160031881936 0.175714069239873 0.166738392261983 0.180313085211793 0.173516508156761 0.166337148492579 0.18166329925331 0.164786543373061 0.177672938224201 0.166377745328327 0.166182463920006 0.163790229301170 0.174681071496198 0.165509549244899 0.170070438414805 0.170847336252704 0.167440494038827 3 3 - 7230207 7230715 7230502.545 7230074 7231200 - gene protein_coding_gene FALSE TRUE AT3G20680.1 similar to Os05g0500400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055963.1); contains domain NAD(P)-binding Rossmann-fold domains (SSF51735) 0.007052986953066 0.0661009089474354 0.948843926109569 1 0.773720878290066 13.9693358056531 0.007052986953066 0.119552332462943
AT3G44890_at 10.2451003448265 10.1411988456622 9.66760106797174 9.44265273397189 10.2138446302471 9.9116943790301 10.4422050738643 10.2085813324685 9.9787495485517 10.3509605165563 10.6239217779901 11.0914545659825 10.2827176829417 10.4706670679303 11.2977571956081 10.5946201561824 10.1351682212439 10.5022182002102 10.2281007768707 0.086104224999283 0.0838666152443975 0.0905347583657632 0.0946534763436506 0.0858393290350132 0.0933795758047703 0.0838254112781245 0.087181728351775 0.0971139211928507 0.0859445510410725 0.082720714463057 0.082720714463057 0.0838177352736946 0.0846482667996232 0.0858768655009984 0.082720714463057 0.0877066115370488 0.0902609559721374 0.086866900454183 3 3|0 +|/ 16398051 16398903 16398636.444 16397420 16399451 + gene protein_coding_gene FALSE TRUE AT3G44890.1 RPL9 (ribosomal protein L9); structural constituent of ribosome Plastid ribosomal protein CL9 Identical to 50S ribosomal protein L9, chloroplast precursor (CL9) (RPL9) [Arabidopsis Thaliana] (GB:P25864); similar to 50S ribosomal protein L9, chloroplast precursor (CL9) (GB:Q6JJ61); contains InterPro domain Ribosomal protein L9 N-terminal-like; (InterPro:IPR009027); contains InterPro domain Ribosomal protein L9; (InterPro:IPR000244) -0.00572226760764583 -0.0659239330357871 0.948980667201716 1 0.77370862272707 20.439486078924 -0.00572226760764583 0.0787868492746004
AT4G14000_at 6.95969818061036 6.81482583701233 6.75390538660929 6.8508861786187 7.6820877266273 6.9517943553745 6.92197200411113 7.2768836125305 5.90988386364702 5.94068870947153 5.38566584815742 5.70035953246952 6.25787684604263 6.05492777662331 5.96686703265039 6.14348743908428 6.23102550398716 5.99452468500675 6.29533107876598 0.216549162329123 0.218219563646935 0.214000790305931 0.211616304547436 0.213124127873434 0.231161602279519 0.214758380194424 0.223941836304678 0.242690972405252 0.215472625551899 0.219956952070581 0.210734180726147 0.216088798575137 0.214299660086739 0.221091900831754 0.210734180726147 0.228745884262935 0.222574649437488 0.21447763478758 4 0|4 /|+ 8091564 8092053 8091794.25 8090812 8092667 + gene protein_coding_gene FALSE TRUE AT4G14000.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G43320.2); similar to Os09g0359900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001062976.1); similar to H0425E08.4 [Oryza sativa (indica cultivar-group)] (GB:CAH67536.1); contains domain no description (G3D.3.40.50.150); contains domain S-adenosyl-L-methionine-dependent methyltransferases (SSF53335); contains domain UNCHARACTERIZED (PTHR21095); contains domain UNCHARACTERIZED (PTHR21095:SF5) -0.0077346071920652 -0.0644222531092764 0.95014101707533 1 0.773605952347131 13.0342448520022 -0.0077346071920652 0.143717072045879
AT3G05760_at 8.2718519961708 8.23282295927203 8.24941118771845 8.092423173573 8.27798035856416 7.92050140166632 7.6362763634934 7.22112220468738 7.39092953154776 7.96443129365733 7.25674110667074 7.86205793197629 7.62536216266586 7.38405981007562 7.18008034326168 7.28880766569724 7.39292718809554 7.11820189930532 7.73058897604155 0.183965881344868 0.173634432617762 0.178915180401973 0.180475613358340 0.173498331263602 0.182578218214990 0.174460866502021 0.180886453418528 0.195255559476664 0.177192263399243 0.188502971559103 0.177735629033074 0.176476411194302 0.184863841508271 0.173498331263602 0.178638313105365 0.190436090276105 0.182097822507047 0.18184128645416 3 0|3 /|+ 1708396 1709880 1709163.333 1707909 1710044 + gene protein_coding_gene FALSE TRUE AT3G05760.1 nucleic acid binding / zinc ion binding similar to Os03g0831900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051798.1); similar to zinc finger, matrin type 2 [Danio rerio] (GB:NP_997846.1); contains InterPro domain Zinc finger, U1-type; (InterPro:IPR003604) -0.00611309373621505 -0.0636221549674366 0.950759305323314 1 0.773552214343615 15.5297218875852 -0.00611309373621505 0.0988553742744625
AT1G22700_at 9.45405823494147 9.29820529383785 9.23851549963328 8.9380345945195 9.59634098746535 9.25180300172022 9.72829610102517 9.50004587076658 8.67992836120936 9.36984806678686 9.33038398006889 9.28158204014255 9.1875103293876 9.2574205827643 9.5044628448862 9.2082260932267 9.27285262545152 9.10169047721578 9.001895146846 0.12227294967236 0.113676220004188 0.119871889200784 0.112729931801353 0.118013449074627 0.123294471993559 0.119156136327728 0.117377630290680 0.162561080068816 0.121558097461763 0.118134252014872 0.112729931801353 0.118917567071745 0.117909984842188 0.115562517598960 0.121426371433818 0.117039895682723 0.132292526885618 0.122728565127813 1 1|0 -|/ 8028367 8029159 8028905.9 8028147 8029960 - gene protein_coding_gene FALSE TRUE AT1G22700.1|AT1G22700.2|AT1G22700.3 tetratricopeptide repeat (TPR)-containing protein|binding similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to tetratricopeptide repeat, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47762.1); similar to tetratricopeptide repeat, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66115.1); similar to putative stress inducible protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93720.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440)|similar to SPY (SPINDLY), transferase, transferring glycosyl groups [Arabidopsis thaliana] (TAIR:AT3G11540.1); similar to tetratricopeptide repeat, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABB47762.1); similar to tetratricopeptide repeat, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABG66115.1); similar to putative stress inducible protein [Oryza sativa (japonica cultivar-group)] (GB:AAM93720.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) 0.00590720452701365 0.0635202967381714 0.95083802038509 1 0.773545421251251 18.5182824379505 0.00590720452701365 0.0924480471426071
AT1G09070_at 11.1871115685441 11.4169593110491 10.9377350396774 11.2875644779302 11.2846237045701 10.9132470036515 10.8440123358626 10.9404759620621 10.5511526544771 10.1533344290819 10.1847828487971 10.0308054004014 10.4392697694490 10.3977300216304 9.87977817730393 10.6369195123785 10.0749743755645 10.4327470772147 10.0639727037853 0.087143049779254 0.083603705735075 0.0896805570401623 0.0838813603566062 0.087822743608819 0.0827078052056008 0.091768152804396 0.0839309651331581 0.087094456518723 0.087486120271777 0.0846560745443826 0.0824696278781958 0.0841844871167524 0.085378430874538 0.0937047129138544 0.0833423023176924 0.0899030476832466 0.0878762392650525 0.0865858143970837 1 1 + 2928145 2928620 2928390.636 2927706 2928971 + gene protein_coding_gene FALSE TRUE AT1G09070.1 (AT)SRC2/SRC2 (SOYBEAN GENE REGULATED BY COLD-2); protein binding SRC2 specifically binds the peptide PIEPPPHH, and moves from ER to a vacuole fraction where it gets internalized. Involved in Protein Storage Vacuole targeting. similar to C2 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G16510.1); similar to SRC2 [Glycine max] (GB:BAA19769.1); contains InterPro domain C2; (InterPro:IPR000008); contains InterPro domain XYPPX repeat; (InterPro:IPR006031); contains InterPro domain C2 calcium/lipid-binding region, CaLB; (InterPro:IPR008973) 0.00606269873609766 0.0632874360511683 0.951017975026921 1 0.773529932232914 21.3593557555637 0.00606269873609766 0.0982664826124415
AT4G24800_at 9.61880635217407 9.92743216490945 9.57811402383957 9.7723986854955 10.2263105492608 10.0717149462608 9.84629899844686 9.88799941051015 10.1356191340565 10.1329181989231 10.1953223379007 10.0716054036913 9.8754211321148 9.91367174554224 10.1272361025555 10.0374192545149 9.85613036500113 10.1103241093847 10.1087149413263 0.111949259789439 0.109068441021982 0.11568426287705 0.116002520708973 0.110817653218123 0.115701318330216 0.113419359127142 0.108713816554894 0.115675419471998 0.109993776112999 0.110650358646687 0.112799599676337 0.109825896639563 0.109834363838191 0.110847883942029 0.108996607313366 0.120347347207711 0.113183852391574 0.107887245160892 4 4 + 12784319 12784849 12784561.273 12781772 12785207 + gene protein_coding_gene FALSE TRUE AT4G24800.1|AT4G24800.2 MA3 domain-containing protein similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G63190.2); similar to MA3 domain-containing protein [Arabidopsis thaliana] (TAIR:AT3G48390.1); similar to H0525D09.11 [Oryza sativa (indica cultivar-group)] (GB:CAH66971.1); similar to Os08g0120500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060879.1); similar to OSJNBb0011N17.20 [Oryza sativa (japonica cultivar-group)] (GB:CAD41103.2); contains InterPro domain Initiation factor eIF-4 gamma, MA3; (InterPro:IPR003891) -0.00517956602988212 -0.0626240757360796 0.951530635826976 1 0.773486119533745 19.9407054235822 -0.00517956602988212 0.068925990446294
AT1G56150_at 8.06278901377537 7.8823577895935 6.9958456278508 7.10802909432453 7.65390951106225 8.10780689001583 4.6804258201536 5.78565432911078 7.27981016723622 6.28754966856541 4.84699717197887 5.9380845649941 5.36527305936649 4.43061296852822 4.8929505654245 4.94133703717781 5.57648933413266 4.93124742488158 4.42896186689837 0.254697352256651 0.253841233674506 0.246980114077839 0.244075175281895 0.246154593740108 0.261817676423811 0.250256682652270 0.245587570127385 0.259644269202429 0.242193024053805 0.251518334552563 0.242193024053805 0.268649349319568 0.258091477453825 0.250642271546713 0.247154770679718 0.258921838776317 0.248803405764368 0.263722217557595 1 1 + 21021105 21021401 21021263.636 21021050 21021604 + gene protein_coding_gene FALSE TRUE AT1G56150.1 auxin-responsive family protein similar to auxin-responsive family protein [Arabidopsis thaliana] (TAIR:AT3G12830.1); similar to putative auxin-induced protein family [Zea mays] (GB:AAT42186.1); contains InterPro domain Auxin responsive SAUR protein; (InterPro:IPR003676) -0.00990442121721524 -0.0619242929109965 0.952071470633468 1 0.77344040112653 12.5916762178411 -0.00990442121721524 0.210009762986652
AT3G21580_at 4.983847735736 5.7296157061878 5.57753431017465 4.88252861736765 5.41926608593321 5.63315952167112 6.29413233539624 6.30662366822238 5.34915608328267 5.4918167330426 5.97257729803187 6.04873355689504 5.70500733355018 5.90793764562027 6.06461103968108 5.87600367520672 6.05027359482494 5.91810504472282 5.68901550152756 0.191029132655512 0.181158371555755 0.185833131378000 0.181008952351253 0.188992196194438 0.192285892000699 0.182958523370589 0.181241230866741 0.20064706955126 0.183579098753777 0.180923929144328 0.182188367888054 0.185938795273339 0.195043083625992 0.186961761874419 0.182583876924038 0.188312693179668 0.187403196849539 0.186519795223024 3 3|0 -|/ 7602024 7602923 7602541.8 7601975 7603892 - gene protein_coding_gene FALSE TRUE AT3G21580.1|AT3G21580.2 cobalt ion transporter similar to Os05g0400600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055482.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL58610.1); contains InterPro domain Cobalt transport protein; (InterPro:IPR003339) -0.00876134249163918 -0.0618681219664489 0.952114884102535 1 0.773436753602904 11.3297896248449 -0.00876134249163918 0.180268578282813
AT2G42700_at 5.57501283864068 5.83669862893441 5.24171086427703 5.44083163033857 5.26716750016242 5.25848058518283 4.63385620288894 4.70201839050858 4.68197693292098 5.0419611831186 4.68383582634582 5.17313989807785 4.46948967312246 4.67243512238923 4.58858368698714 4.86260913917488 4.92875904806067 4.21220340929190 4.7468719856923 0.227217132898675 0.232632028979383 0.234629103500376 0.224673639465933 0.226117094237577 0.22479164911123 0.226838084698458 0.23526153676187 0.240335939917389 0.234036263824867 0.228358656411740 0.223571084579305 0.226641673060958 0.225670709503228 0.231795847306836 0.22480926619149 0.228805596867402 0.226822616311393 0.229578437067664 2 2|0 +|/ 17788350 17789059 17788646.3 17785429 17789214 + gene protein_coding_gene FALSE TRUE AT2G42700.1 similar to hypothetical protein LOC_Os11g06810 [Oryza sativa (japonica cultivar-group)] (GB:AAX93012.1); similar to Os11g0169100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065849.1); contains InterPro domain Sec1-like protein; (InterPro:IPR001619) -0.0047851310328304 -0.0608312966610771 0.952916257073234 1 0.773370020068429 10.0057147514543 -0.0047851310328304 0.0581345400831923
AT4G34660_at 6.09071280537716 6.24013202012343 5.83829353851079 6.3528071674255 6.77442808299035 6.55667948964023 6.5755895744683 6.50078473278502 6.1356108493597 6.38496089051746 6.56220361092845 6.73634729717304 6.08141838504979 5.87742263139387 6.38472286249631 6.27009518495228 6.22498961519207 6.0028470066525 6.33277695225853 0.185189428036426 0.183357696870823 0.187343312532602 0.186732241816847 0.188065244213253 0.183919387792933 0.179706637987723 0.190432255440233 0.194564595538788 0.182897061076245 0.185808539072926 0.186909178619050 0.179706637987723 0.196817420902475 0.186690209987139 0.179706637987723 0.186510895009268 0.183809365231518 0.187029565650066 4 4|0 -|/ 16545650 16546612 16546216.1 16545202 16548458 - gene protein_coding_gene FALSE TRUE AT4G34660.1 SH3 domain-containing protein 2 (SH3P2) similar to SH3 domain-containing protein 3 (SH3P3) [Arabidopsis thaliana] (TAIR:AT4G18060.1); similar to SH3 [Medicago truncatula] (GB:ABE88784.1); contains InterPro domain Src homology-3; (InterPro:IPR001452) 0.00590177331890196 0.0607807876879247 0.952955297431438 1 0.773366797924279 12.6421561205526 0.00590177331890196 0.100916332773780
AT4G18140_at 5.12866673017777 5.49083243932736 4.71537593710206 5.47749016258342 6.2880895449577 4.57599600603353 4.99993199869086 4.77936929089812 4.72326609178001 4.09043485278847 3.94491739392557 4.42440608022544 4.21936899018285 4.68466544332455 3.59919534518264 5.06618485627767 3.73192211457478 4.55281029444061 4.42768847040308 0.247622728406779 0.248122841156562 0.254292134480033 0.251903268600952 0.254942792533305 0.253728064906123 0.242369145764437 0.244837155297625 0.247435393437115 0.246953782417224 0.242093429058729 0.246541360103346 0.242138875755392 0.251363871741833 0.255589610619650 0.242093429058729 0.262461939939187 0.243187080272 0.244172939471309 4 4 - 10047339 10048127 10047729.909 10046587 10049450 - gene protein_coding_gene FALSE TRUE AT4G18140.1|AT4G18140.2 similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT5G46410.1); similar to CTD-phosphatase-like protein [Hordeum vulgare subsp. vulgare] (GB:AAQ92971.1); similar to Os01g0629400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043640.1); contains InterPro domain NLI interacting factor; (InterPro:IPR004274)|similar to NLI interacting factor (NIF) family protein [Arabidopsis thaliana] (TAIR:AT5G46410.1) 0.0143375705026125 0.0599312448295285 0.95361196229267 1 0.773313003342753 9.52783415693333 0.0143375705026125 0.332512469644332
AT1G74840_at 8.62632770212461 9.1019970423932 8.95969389320586 9.00962381510608 9.66478817109381 9.77971898881424 9.393355894566 9.41837368329958 8.86780222840627 8.53755101345786 8.86743674346034 8.36215664680705 8.86626767979638 8.28602998000929 8.22219347805741 8.43177256019047 8.68039440252425 8.23554858077323 8.76413428482132 0.136562787298294 0.136842871194024 0.133986999669940 0.132308725462963 0.136315086164045 0.141407864022243 0.134951698385688 0.140727810357805 0.142409131054909 0.137178595553509 0.138431817432456 0.136590025454932 0.132308725462963 0.144271726980142 0.144350305421035 0.137690476775394 0.143005150419542 0.144037865950213 0.138681870484004 1 1 - 28119873 28120736 28120207.364 28119558 28121066 - gene protein_coding_gene FALSE TRUE AT1G74840.1 myb family transcription factor similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT1G19000.2); similar to putative DNA binding protein-like [Solanum tuberosum] (GB:ABB86258.1); contains InterPro domain Homeodomain-related; (InterPro:IPR012287); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) -0.0053724317418471 -0.0599229964714733 0.953618338149176 1 0.773312484750016 17.8528036577492 -0.0053724317418471 0.0852352284574823
AT1G20760_at 7.83948301041968 7.78928854949227 7.58167116794365 7.60590532905801 8.05476442816067 7.94412465134739 7.5971387329585 7.73849916592933 7.57262428912824 7.1655738128244 7.20884677253002 7.61808854650646 7.45447917398545 7.29345695173277 7.12256431856772 7.3552662682121 7.35195238084492 7.53373933008408 7.50543496764981 0.163592772212716 0.168077168970951 0.16225819157761 0.174716409821787 0.162107535547866 0.175344562244266 0.163139833312567 0.160817273153459 0.180719103059861 0.161190838099506 0.167174105374209 0.160760736035451 0.164858669066746 0.165573927614829 0.160015266209278 0.164259534198148 0.172984836672597 0.171402786902955 0.162189788071872 1 1 + 7214287 7214709 7214507.091 7209359 7214982 + gene protein_coding_gene FALSE TRUE AT1G20760.1 calcium-binding EF hand family protein similar to calcium-binding EF hand family protein [Arabidopsis thaliana] (TAIR:AT1G21630.1); similar to EPS15 homology (EH) [Medicago truncatula] (GB:ABE79536.1); similar to Os03g0130500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001048855.1); similar to Os06g0728600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058644.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048); contains InterPro domain EPS15 homology (EH); (InterPro:IPR000261) 0.00413444535063845 0.0579953069630918 0.955108508747683 1 0.773193242519558 15.1597811665847 0.00413444535063845 0.0325281597956144
AT2G18300_at 10.4505054704525 10.6782927912287 10.2160616333313 10.3213635563408 11.0842989418326 10.8960255723393 10.7133663008731 10.7112470770194 10.6170941823813 10.5181502357461 11.0917980554970 10.7159235006749 11.0363974227746 10.8942357093892 10.5119640154727 10.6956937410987 10.2330488733684 10.4840090264820 10.9885299747491 0.0896439586595027 0.0892939223634923 0.0871868090455684 0.0880585362864327 0.089500672980198 0.0928113273261524 0.0927405270723133 0.090979122768565 0.101441782043244 0.0880409170417956 0.086704746877321 0.090221239784169 0.0882264759401244 0.0919929331188259 0.091393753654875 0.0898104748654525 0.0996622462774069 0.0962426820706747 0.0884859949697079 2 2|0 -|/ 7960106 7960945 7960479.3 7959749 7961649 - gene protein_coding_gene FALSE TRUE AT2G18300.1|AT2G18300.2 basic helix-loop-helix (bHLH) family protein similar to BEE2 (BR ENHANCED EXPRESSION 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36540.2); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092)|similar to BEE2 (BR ENHANCED EXPRESSION 2), DNA binding / transcription factor [Arabidopsis thaliana] (TAIR:AT4G36540.1); similar to Helix-loop-helix DNA-binding [Medicago truncatula] (GB:ABE85937.1); contains InterPro domain Helix-loop-helix DNA-binding; (InterPro:IPR011598); contains InterPro domain Basic helix-loop-helix dimerisation region bHLH; (InterPro:IPR001092) -0.00447824423161558 -0.0579005345210763 0.95518177597701 1 0.773187480585946 21.3417994632873 -0.00447824423161558 0.0542925495473551
AT1G13870_at 4.92991402770863 5.36744441624793 4.60814572885544 5.17382336565439 6.00974082605911 5.20662299220074 5.46259333021489 5.16731718274349 4.66192683461045 4.20484780643118 4.93951046276564 4.67292551620551 4.61121225977477 4.42450903359542 4.4761199992688 4.44761469819277 3.91950870994544 3.83261428050833 4.38118409958789 0.245187194474197 0.242451358398726 0.252079481587581 0.242451358398726 0.24572184664517 0.262734575800710 0.247920901737647 0.253971783028009 0.259053011298011 0.249482225158316 0.24915576704727 0.247349907536866 0.247207105229629 0.248892228586149 0.243871299681701 0.247443627967773 0.269098651306265 0.247215476368925 0.242843720587171 1 1 - 4747494 4747877 4747705.636 4747262 4748639 - gene protein_coding_gene FALSE TRUE AT1G13870.1 DRL1 (DEFORMED ROOTS AND LEAVES 1) Encodes a homolog of the yeast TOT4/KTI12 protein. Yeast TOT4/KTI12 associates with Elongator, a multisubunit complex that binds the RNA polymerase II transcription elongation complex. Ds insertion mutant has enlarged shoot apical region, 4 to 6 long slender leaves followed by spike-like structures, short roots. similar to RNA polymerase II elongator associated protein (ISS) [Ostreococcus tauri] (GB:CAL55593.1); contains InterPro domain Chromatin associated protein KTI12; (InterPro:IPR013641) 0.00864080605963324 0.0578438368138311 0.955225608384527 1 0.77318403800481 9.65644429216487 0.00864080605963324 0.192985847332739
AT1G27460_at 4.53050863721904 4.48142500016414 3.32754738134383 2.99754533848950 4.15548091764385 4.47852703525602 4.05156041822205 3.80427191322661 5.35342108108865 4.98230049138027 6.93899599620576 5.99640033154446 5.3895968562149 6.07655334525847 6.44606938312378 5.08260732741031 3.96587817874808 5.35934120543952 5.23560346774273 0.223050792687309 0.224295421713496 0.252074627189753 0.241115813990954 0.228392225371869 0.226376973519761 0.223050792687309 0.234771238313912 0.236341495118451 0.223050792687309 0.228128972056950 0.223050792687309 0.223050792687309 0.225422009470103 0.227520799014161 0.223050792687309 0.231755781953926 0.238392545048629 0.227294244959035 1 1|0 +|/ 9536679 9537376 9537016.8 9534519 9537548 + gene protein_coding_gene FALSE TRUE AT1G27460.1 NPGR1 (NO POLLEN GERMINATION RELATED 1); calmodulin binding encodes a calmodulin-binding protein that is expressed in pollen, suspension culture cells, flowers, and fruits. similar to NPG1 (NO POLLEN GERMINATION 1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT2G43040.1); similar to Os12g0565300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001067047.1); similar to Os03g0200600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049290.1); similar to calmodulin-binding protein MPCBP [Zea mays] (GB:AAG12459.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.00533883805102409 -0.0578183030680505 0.955245348310228 1 0.773182488742979 9.40204433422748 -0.00533883805102409 0.0910505944945589
AT1G65960_at 12.0848245889309 12.1288046343193 12.1013035646967 12.0910348855267 12.3722999813684 12.2791064281510 12.5400223348442 12.5825825754953 12.1346202261032 12.7705418828415 12.7750165595749 12.6150817559304 12.8503726253847 12.6589484226074 12.4821757369522 12.5589364861160 12.4751332542239 12.7063199952319 12.6700240673278 0.0603306328667822 0.0612716537824673 0.0645516036961262 0.0655249533383653 0.0607628413048832 0.0635001322257252 0.060533778989547 0.0597455916386871 0.0657314500333518 0.0597455916386871 0.0597455916386871 0.0597455916386871 0.0612030501493975 0.0670254297868054 0.0601751204799335 0.0605562266551714 0.0637035490841458 0.061574515831789 0.0597455916386871 1 1 + 24560290 24560751 24560597.182 24558084 24561094 + gene protein_coding_gene FALSE TRUE AT1G65960.1 GAD2 (GLUTAMATE DECARBOXYLASE 2); calmodulin binding glutamate decarboxylase (GAD2) Identical to Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2) (GAD2) [Arabidopsis Thaliana] (GB:Q42472); similar to GAD (Glutamate decarboxylase 1), calmodulin binding [Arabidopsis thaliana] (TAIR:AT5G17330.1); similar to glutamate decarboxylase 2 [Brassica juncea] (GB:AAS79669.1); contains InterPro domain Glutamate decarboxylase; (InterPro:IPR010107); contains InterPro domain Pyridoxal-dependent decarboxylase; (InterPro:IPR002129) -0.00396813635826021 -0.0575330049342163 0.955465912129509 1 0.773165224739808 24.8551524557966 -0.00396813635826021 0.0193760201353217
AT4G36860_at 7.8455900681082 8.61742306316438 7.70814114243134 8.09863772972141 8.6005566947593 8.06735363493384 7.63327009691231 7.70409546307515 7.8103258922655 7.97478349087794 7.79335476634684 7.96791513650058 7.5562864449286 8.08024779336058 7.21879364251534 8.03714524107061 7.5169747322168 7.50752529812194 7.80197142724342 0.213069461921149 0.204283489055155 0.222620528534742 0.219145091671103 0.205709307521256 0.207616300520582 0.204616788453077 0.210887624607423 0.211595670748537 0.205290511953307 0.208200546984431 0.204283489055155 0.212663711728166 0.210613467439092 0.21111232875389 0.204283489055155 0.214522062647249 0.209288828619362 0.207638860243626 4 0|4 /|- 17358581 17359190 17358917.778 17358376 17361872 - gene protein_coding_gene FALSE TRUE AT4G36860.1|AT4G36860.2 LIM domain-containing protein similar to ubiquitin interaction motif-containing protein / LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19270.1); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34242.1); similar to Os06g0182500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056985.1); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34243.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781)|similar to ubiquitin interaction motif-containing protein / LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G19270.1); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34242.1); similar to Os06g0182500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056985.1); similar to putative LIM domain containing protein [Oryza sativa (japonica cultivar-group)] (GB:AAW34243.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781); contains InterPro domain Ubiquitin interacting motif; (InterPro:IPR003903) 0.00799886970008656 0.0574644014583528 0.955518950041045 1 0.773161086121845 15.8204538126441 0.00799886970008656 0.176272591364512
AT3G02720_at 9.45594689194722 9.35856623312578 9.55175041479121 9.52472929635938 9.64181144072276 9.87518604141692 10.0195221602572 10.1354014006123 9.70514328008366 9.87036964551958 10.0569166955987 9.68627427502788 9.99321232938242 9.58035806315713 9.7232822415833 9.95969850726745 10.0260711297653 9.89155840753635 9.76189314681947 0.0924439140138932 0.100570013826819 0.0894171699635682 0.0899839660119937 0.0904130958527528 0.0922817758381011 0.0933613973326626 0.0930796239858735 0.0945737205467626 0.0916080022883894 0.0963694316086088 0.089236629877993 0.0974418772921587 0.107839156171622 0.0968243408800788 0.089236629877993 0.095220464575744 0.0906077145943026 0.0928985828550245 3 3 + 587461 588034 587706.818 586231 588372 + gene protein_coding_gene FALSE TRUE AT3G02720.1 DJ-1 family protein / protease-related similar to YLS5 (yellow-leaf-specific gene 5) [Arabidopsis thaliana] (TAIR:AT2G38860.2); similar to Os04g0671700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054220.1); similar to unknown [Oryza rufipogon] (GB:ABC73064.1); contains InterPro domain ThiJ/PfpI; (InterPro:IPR002818); contains InterPro domain Peptidase C56, PfpI; (InterPro:IPR006286) -0.00422688723624165 -0.0560247469189189 0.95663201233571 1 0.773075374739071 19.5172676417236 -0.00422688723624165 0.0483640064948244
AT1G05960_at 5.45699714489189 6.02006038581585 5.54612588038948 5.61340283797414 5.71561809422557 5.434934791073 5.44791966216173 5.08688936391457 6.16511140081711 5.52968388645057 5.66918384806866 5.90945841843403 5.82246750876706 6.16309481512717 5.56244130728833 5.63572264799794 5.58442501612355 5.70827851991606 5.76251326675889 0.177810871731691 0.184169674068043 0.178876459039000 0.184888387244856 0.179054045870588 0.184660850026717 0.178495502619205 0.181469323983435 0.189998961835150 0.188583521237101 0.186425896397483 0.181706757435074 0.183218503867014 0.180726778922446 0.177810871731691 0.178072268379728 0.188917611567171 0.183954939938351 0.188772482822762 1 1 - 1808493 1809289 1808902.818 1807972 1815473 - gene protein_coding_gene FALSE TRUE AT1G05960.1 binding similar to cyclin-related [Arabidopsis thaliana] (TAIR:AT2G41830.1); similar to At1g05960/T21E18_20 [Medicago truncatula] (GB:ABE90589.1); similar to hypothetical protein MtrDRAFT_AC136506g30v1 [Medicago truncatula] (GB:ABE82339.1); similar to Os01g0898300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045092.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989) 0.00616746029634585 0.0559590056761034 0.956682842292933 1 0.773071512639318 11.3282369508345 0.00616746029634585 0.126067964319900
AT3G04610_at 8.53583657454704 8.29774778415278 8.20030732524948 8.30392320517122 8.85578509138352 8.40784045568045 8.22672243909303 8.21097971464843 7.76913818731019 7.77080687575358 7.45446906693865 7.89199210459746 7.84204944017982 7.61559896738458 7.85425913027607 8.0960935067522 7.35106079188226 7.77144339828318 8.0058729461104 0.154388308087067 0.157155792403702 0.158723239188031 0.153522849681613 0.163827595591957 0.163006223930222 0.162121447548346 0.155825361169138 0.155463102657961 0.157911558111877 0.162895518519278 0.153749365224357 0.156109472297529 0.166030752826166 0.158277632355208 0.158734880207477 0.162151420860298 0.155530309839958 0.152599783064229 3 3|0 -|/ 1250798 1251556 1251188.889 1250559 1254879 - gene protein_coding_gene FALSE TRUE AT3G04610.1 FLK (FLOWERING LOCUS KH DOMAIN); nucleic acid binding similar to PEP (PEPPER), nucleic acid binding [Arabidopsis thaliana] (TAIR:AT4G26000.1); similar to FLK, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA99242.2); contains InterPro domain KH; (InterPro:IPR004087); contains InterPro domain KH, prokaryotic type; (InterPro:IPR009019); contains InterPro domain KH, type 1; (InterPro:IPR004088) 0.00507859449478532 0.0553949678349809 0.95711895486958 1 0.773038563320044 16.1715062256632 0.00507859449478532 0.0896424415877122
AT2G47700_at 8.2392858734299 8.24458186156703 8.17372720247822 8.04601405894799 8.83408268551167 8.68245136578406 8.37499422306782 7.9255949837089 8.48970554684958 8.56430555206029 8.5449496847117 8.05620094332616 8.37638022523958 8.33647421841452 8.24754262372256 8.25393900081368 8.3084165284438 8.37768191065101 8.56845336485158 0.141972818704423 0.134356702491341 0.141573571887946 0.140833757723143 0.137944342210716 0.147721225612463 0.146385560311108 0.138980205801995 0.161825211342765 0.148723448582472 0.137847603938969 0.140336851227028 0.136974525119767 0.144642811933046 0.140933146689870 0.134368465827481 0.146076365371579 0.147407120790576 0.138768524359947 2 2|0 -|/ 19559795 19560514 19560116.111 19559384 19561654 - gene protein_coding_gene FALSE TRUE AT2G47700.1 zinc finger (C3HC4-type RING finger) family protein similar to transcription factor, putative / zinc finger (C3HC4 type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G05545.1); similar to Zinc finger, RING-type; Zinc finger, PHD-type [Medicago truncatula] (GB:ABE92858.1); contains InterPro domain Zinc finger, RING-type; (InterPro:IPR001841) 0.00491562336598395 0.0548911378706588 0.957508527768168 1 0.773009413187778 16.7418513467299 0.00491562336598395 0.0850067387304825
AT4G29890_at 6.71014172220945 6.35281423661827 6.63679532436692 6.11079274798922 7.50368207205394 6.6702280481104 6.57145980949463 6.45795744939836 6.94304814104619 7.00736727088103 6.8838433544154 6.96186707176911 6.67195631831 7.4035965271097 6.36525684403743 7.10551247922423 6.69134616875503 7.11332307668266 7.41634660021816 0.218446107621471 0.226992280110504 0.223809767472498 0.221511077635134 0.219408419388879 0.230771596261822 0.219634691823522 0.216122087059168 0.224605696815106 0.212201440060266 0.218022269128628 0.213258831641209 0.210445158664456 0.214512436087093 0.222608511324198 0.214798636571044 0.23787358869621 0.210445158664456 0.216486748998519 4 4 + 14609911 14610872 14610433.2 14608839 14611004 + gene protein_coding_gene FALSE TRUE AT4G29890.1 choline monooxygenase, putative (CMO-like) Identical to Probable choline monooxygenase, chloroplast precursor (EC 1.14.15.7) [Arabidopsis Thaliana] (GB:Q9SZR0); similar to CMO protein [Zea mays] (GB:ABI21840.1); contains InterPro domain Bacterial ring hydroxylating dioxygenase, alpha subunit; (InterPro:IPR001663); contains InterPro domain Rieske [2Fe-2S] region; (InterPro:IPR005806) -0.00769251515528446 -0.0538105900061438 0.958344072692214 1 0.77294779329458 13.6376547933234 -0.00769251515528446 0.182479561056071
AT4G00780_at 11.3529263956471 11.3426041335969 11.8325004049871 11.6284101472147 11.7293910100925 11.3254648232661 11.7753259432752 11.9081612595115 11.0346924816815 11.4327420563688 11.1981469030352 11.020628177332 11.4519886185871 11.1732816401302 10.6555435799078 11.4249020960834 11.3058739540582 10.9016667919181 11.0879908805859 0.0870708197394934 0.0869054414488728 0.0919216333176193 0.0880379977154745 0.0892169001574026 0.100748996864577 0.0911176718250639 0.0886892370424442 0.09107426376543 0.0886574592821209 0.0894149336568856 0.0886786340489108 0.0869054414488728 0.087527825991531 0.0876563165713456 0.0869054414488728 0.0947896034723368 0.090046821580505 0.093692345745386 4 4 + 335368 336094 335710 334732 336344 + gene protein_coding_gene FALSE TRUE AT4G00780.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein similar to meprin and TRAF homology domain-containing protein / MATH domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G01390.1); similar to Os12g0489100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066793.1); similar to ubiquitin-specific protease 12, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA98280.2); contains InterPro domain TRAF-like; (InterPro:IPR008974); contains InterPro domain MATH; (InterPro:IPR002083); contains InterPro domain TRAF-type; (InterPro:IPR013322) -0.00472533634907202 -0.0536676364918278 0.958454617084848 1 0.772939732841432 22.7751709028707 -0.00472533634907202 0.0816409047265475
AT2G21140_at 5.14171730474736 5.23288169590624 2.96947016928261 3.23698176869051 3.43745283534177 4.68644927106274 3.35998234421618 4.4996721402246 5.21961755252267 4.94429576950163 6.56067912448323 7.58339353360794 5.06935030279223 5.2525076786752 7.05811516951724 4.65473860023392 4.65463991399178 6.76268146781934 4.68861860157647 0.279967663511271 0.276884981398527 0.276289894971825 0.287935052748892 0.268980904850915 0.285564361820681 0.273142910519114 0.273678784917551 0.279575501155566 0.271687953304480 0.270725809818552 0.279177148147449 0.276141181133824 0.272111574880389 0.270968350405061 0.269801619597193 0.279552757180744 0.279804989542719 0.276031965986181 2 2 - 9067982 9068518 9068191.091 9067706 9069172 - gene protein_coding_gene FALSE TRUE AT2G21140.1 ATPRP2 (PROLINE-RICH PROTEIN 2) Proline-rich protein expressed in expanding leaves, stems, flowers, and siliques. similar to PRP4 (PROLINE-RICH PROTEIN 4) [Arabidopsis thaliana] (TAIR:AT4G38770.1); similar to proline-rich protein [Solanum tuberosum] (GB:CAA04449.1); contains InterPro domain Protein of unknown function DUF1210; (InterPro:IPR010616) 0.0113471945886695 0.0526262341678989 0.959259950609115 1 0.772881659829012 9.52075454039585 0.0113471945886695 0.296664270781653
AT1G13900_at 7.68070461096037 7.98882553284339 7.50383697968313 7.89483278644836 7.64057557889301 8.15209268429953 7.9371278176812 8.17798759391354 7.04774675889005 7.2450475217244 7.35785248879403 7.39495453580824 7.11355468020458 7.36383358263595 7.2043164032791 7.10193982764279 7.35075894798364 7.30181731423219 7.04762103307236 0.220203954138267 0.217678703858896 0.22721166037526 0.217678703858896 0.217678703858896 0.217678703858896 0.218126622756726 0.222757665253486 0.224554472099918 0.217678703858896 0.220063809421867 0.217678703858896 0.220068918065677 0.221910675606557 0.224644186218311 0.217962869547256 0.226756868113735 0.218213389558660 0.228906174420574 1 1 - 4753518 4754017 4753760.636 4753142 4755577 - gene protein_coding_gene FALSE TRUE AT1G13900.1 calcineurin-like phosphoesterase family protein similar to ATPAP9/PAP9 (purple acid phosphatase 9), acid phosphatase/ protein serine/threonine phosphatase [Arabidopsis thaliana] (TAIR:AT2G03450.1); similar to Os07g0111600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058738.1); similar to calcineurin-like phosphoesterase family-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAC15853.1); contains InterPro domain Metallophosphoesterase; (InterPro:IPR004843) 0.00591490991250487 0.0525447761730305 0.959322945509436 1 0.772877165336872 15.0655480699911 0.00591490991250487 0.130364204869395
AT2G39940_at 6.69913825586672 7.2103684730815 6.78793763595608 6.82022235717881 6.90999585537265 6.86082328564917 6.90177631630641 7.4088044850017 5.97549499183861 6.46699649250754 6.7390858192584 6.43072379774335 6.33395343688484 6.28900188141724 6.14720540767484 6.8580344464278 6.61833898007541 6.20217025620121 6.31752916262544 0.233453214775871 0.223481143850591 0.237368333064824 0.246814011286878 0.222481478885183 0.237753767431624 0.222481478885183 0.224818592793311 0.23908385498979 0.228346099039297 0.235039549014907 0.223035085666814 0.225800069816937 0.231978754900926 0.229370199172480 0.224652343907826 0.228835769429228 0.233943997833533 0.238697520771186 2 2 - 16679980 16680478 16680260.091 16679571 16682826 - gene protein_coding_gene FALSE TRUE AT2G39940.1 COI1 (CORONATINE INSENSITIVE 1); ubiquitin-protein ligase Encodes a protein containing Leu-rich repeats and a degenerate F-box motif. Associates with AtCUL1, AtRbx1, and the Skp1-like proteins ASK1 and ASK2 to assemble SCF COI1 ubiquitin-ligase complexes in planta. A single amino acid substitution in the F-box motif of COI1 abolishes the formation of the SCF(COI1) complexes and results in loss of the JA response. Required for wound- and jasmonates-induced transcriptional regulation. Identical to Coronatine-insensitive protein 1 (F-box/LRR-repeat protein 2) (AtFBL2) (COI-1) (AtCOI1) (COI1) [Arabidopsis Thaliana] (GB:O04197); similar to TIR1 (TRANSPORT INHIBITOR RESPONSE 1), ubiquitin-protein ligase [Arabidopsis thaliana] (TAIR:AT3G62980.1); similar to coronatine-insensitive 1 [Lycopersicon esculentum] (GB:AAR82925.1); similar to coronatine-insensitive 1 [Glycine max] (GB:AAZ66745.1); similar to coronatine-insensitive 1 [Nicotiana attenuata] (GB:ABK27928.1); contains domain no description (G3D.3.80.10.10); contains domain RNI-like (SSF52047); contains domain F-box domain (SSF81383); contains domain GRR1-RELATED, ARATH (PTHR23125:SF17); contains domain F-BOX/LEUCINE RICH REPEAT PROTEIN (PTHR23125) -0.00565153073585378 -0.0515447652507315 0.960096320537385 1 0.772822556139330 13.3027105674854 -0.00565153073585378 0.125018567916122
AT4G22720_at 7.09627126029133 7.34523538211266 7.28975282703097 7.31412851210408 7.47834662469733 7.2531467487103 6.87923863892886 6.93418715880833 6.68695706190431 6.78091789254672 6.24126741699955 6.4552206095235 6.52542769758842 6.50607349671516 6.07773818223795 6.80011410463878 6.86659045895793 6.65421494113536 6.91386072738424 0.176280459828127 0.184946000310384 0.182859494671015 0.181335206991792 0.181194903992775 0.193367827299589 0.180537669961283 0.198993630982875 0.188321162629593 0.185362378079875 0.176280459828127 0.183798831359113 0.181585175435156 0.179283076839414 0.180205405912229 0.178856581114463 0.184713287826265 0.187378978551257 0.183769723249960 4 4 + 11937972 11938656 11938386.545 11936953 11938977 + gene protein_coding_gene FALSE TRUE AT4G22720.1|AT4G22720.2 glycoprotease M22 family protein similar to glycoprotease M22 family protein [Arabidopsis thaliana] (TAIR:AT2G45270.1); similar to glycoprotein endopeptidase-like protein [Solanum tuberosum] (GB:ABC01899.1); contains InterPro domain Peptidase M22, glycoprotease; (InterPro:IPR000905); contains InterPro domain Peptidase M22, O-sialoglycoprotein endopeptidase; (InterPro:IPR009180) -0.00398523118506544 -0.0504616115434322 0.960934045702891 1 0.772764589615302 13.8536597727953 -0.00398523118506544 0.0590194125797541
AT4G37760_at 9.8047014034498 10.1121695797644 10.4268241528213 10.5680389212426 10.7027557724368 10.3700531708366 11.3289825300655 11.4885269713430 10.6794296740971 10.7985022465894 10.7733404182611 10.5935424468384 10.9972862165751 10.9555486104735 10.3177234350984 10.8628423989865 11.0847082789949 10.9774229463722 10.5096872233701 0.115316250282142 0.107884213157593 0.113536396205016 0.106914643672456 0.103679579947781 0.115835133602117 0.103731167156503 0.107971756511852 0.115136227932154 0.107632846816142 0.104659007857286 0.104066770192858 0.108248347006252 0.106447206650533 0.113135832336839 0.101627691023147 0.116469216119117 0.104160921387903 0.112020280350381 4 4 + 17745745 17746366 17745967.636 17743881 17746672 + gene protein_coding_gene FALSE TRUE AT4G37760.1 squalene monooxygenase, putative / squalene epoxidase, putative similar to XF1, oxidoreductase [Arabidopsis thaliana] (TAIR:AT1G58440.1); similar to squalene monooxygenase, putative / squalene epoxidase, putative [Arabidopsis thaliana] (TAIR:AT2G22830.1); similar to squalene monooxygenase [Datura innoxia] (GB:AAY22200.1); similar to squalene monooxygenase 2 [Medicago truncatula] (GB:CAD23248.1); similar to putative squalene epoxidase [Lycopersicon esculentum] (GB:AAQ13595.1); contains InterPro domain NAD-binding site; (InterPro:IPR000205); contains InterPro domain Squalene epoxidase; (InterPro:IPR013698); contains InterPro domain FAD dependent oxidoreductase; (InterPro:IPR006076); contains InterPro domain Aromatic-ring hydroxylase; (InterPro:IPR003042) -0.00445749377844051 -0.0493673307149337 0.961780428742493 1 0.772707276879778 21.3416773420628 -0.00445749377844051 0.0866352057989004
AT3G53030_at 7.26619585989461 7.70815561656571 7.24342597310873 7.22892914884329 8.25091399509742 7.98506031730064 7.31107826144832 7.49004535441402 6.63538775223353 7.35897633799815 6.86318496980211 6.64036505204722 7.05273748032967 6.91650832331815 6.70324228511429 6.92277518689766 6.83141433843596 7.07475579677057 7.30458174114961 0.232990408446577 0.226691253339067 0.235773197298326 0.233130894900384 0.224521119047547 0.234945831353488 0.224521119047547 0.241946448474173 0.243705377265041 0.232059904003339 0.230177418683733 0.228244347046701 0.224521119047547 0.242326589888849 0.239968380414404 0.228797985336447 0.247520806903814 0.230521556732328 0.231151198462175 3 3 + 19674521 19675313 19674962.455 19673259 19675481 + gene protein_coding_gene FALSE TRUE AT3G53030.1 SRPK4 (SER/ARG-RICH PROTEIN KINASE 4); kinase/ protein kinase Encodes a protein kinase SRPK4 that specifically targets Arabidopsis Ser/Arg-rich (SR) slicing factors involved in RNA metabolism. In vitro kinase assay showed that SRPK4 phosphorylates the SR protein RSp31. similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT5G22840.1); similar to protein kinase-related [Arabidopsis thaliana] (TAIR:AT3G44850.1); similar to putative serine/ar (GB:AAS79595.1); similar to SRPK4 [Oryza sativa] (GB:AAL58968.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) 0.00459395206793922 0.0488831427059597 0.962154945452418 1 0.772682318357778 14.5481113356090 0.00459395206793922 0.0945084432146666
AT3G09650_at 8.29416788241083 8.23381908813247 8.22673172058838 8.30648981536614 8.17856862116402 8.23666338058083 8.53140423683184 8.65566813008836 6.50218036164258 8.00638917223798 7.2847008401286 7.46309301722363 7.81144106551883 7.82316123709223 7.0975951809934 8.1841067444765 8.30571069590543 7.21667387840362 7.8819649805587 0.161231603229558 0.165245364716129 0.161955933901848 0.163402576247002 0.158026895307490 0.172352811237995 0.158103171109712 0.166009360181762 0.192391395215170 0.162930498945441 0.174538739000267 0.159449339988643 0.158399283616311 0.173418409817462 0.168025557143908 0.155793480871735 0.166190242942015 0.173184379798567 0.162012012340327 3 3 + 2960485 2960985 2960751.091 2958684 2961304 + gene protein_coding_gene FALSE TRUE AT3G09650.1 HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152) RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit. similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT1G03100.1); similar to pentatricopeptide, putative, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABA95579.1); similar to Os12g0102600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065238.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.00342631114316916 -0.0485072561878924 0.9624456984092 1 0.772663111983554 15.8888500280358 -0.00342631114316916 0.0293784678477209
AT2G19680_at 8.36456874057176 8.27335798993348 8.30676388113224 8.49639052786496 8.23876599634308 7.60857823421781 8.71336971683593 8.28500282504575 8.01039915446093 7.68331241803067 8.13875518341507 8.46541400183512 7.5576653709958 8.02144530828724 8.05050347687867 7.9592610642401 7.61208958501262 7.92931700965396 7.50098642166144 0.171447353402980 0.168680442943086 0.171533480521826 0.167518667838552 0.169167456229525 0.170005768678432 0.174804993076553 0.163579669473278 0.180125950496252 0.168050034574782 0.170714810855182 0.172769164396016 0.174900001143950 0.185589841017195 0.170742842432369 0.165828212366592 0.167573645836495 0.176415948223410 0.178759084608439 2 2 + 8509003 8509660 8509305.727 8508407 8509911 + gene protein_coding_gene FALSE TRUE AT2G19680.1|AT2G19680.2 mitochondrial ATP synthase g subunit family protein|hydrogen ion transporting ATP synthase, rotational mechanism / hydrogen ion transporting ATPase, rotational mechanism similar to mitochondrial ATP synthase g subunit family protein [Arabidopsis thaliana] (TAIR:AT4G29480.1); similar to unknown [Solanum tuberosum] (GB:ABA40451.1); contains InterPro domain ATPase, F0 complex, subunit G, mitochondrial; (InterPro:IPR006808) -0.00560489060920011 -0.0482555061560117 0.962640433549318 1 0.772650331362491 16.1350359255385 -0.00560489060920011 0.136802144523213
AT3G08580_at 12.3766411110060 12.4211323646302 12.3811482806211 12.4339629255495 12.2660924178492 12.0338913182865 12.4622805980304 12.7455208850826 12.4955019896114 12.2997202701497 12.7075890105021 12.9190427072716 12.4772071851788 12.5781504586513 12.7161857429985 12.4013886119148 11.9826378018272 12.4321346359632 12.093869143653 0.0633175491522934 0.0626250932733853 0.0701178596222525 0.0667142177426479 0.0637975196540771 0.068271459943313 0.0693545503629106 0.0626250932733853 0.0676604247289126 0.0639152181819029 0.06348150651967 0.0631656518765131 0.062690806640964 0.0704888926770172 0.0645344358057913 0.0643005931422011 0.0698547001851837 0.0640627025927864 0.062847169339644 3 3 - 2605735 2606303 2605993.455 2605448 2607793 - gene protein_coding_gene FALSE TRUE AT3G08580.1|AT3G08580.2 AAC1 (ADP/ATP CARRIER 1); ATP:ADP antiporter/ binding|AAC1 (ADP/ATP CARRIER 1); binding mitochondrial ADP/ATP carrier Identical to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (ANT1) [Arabidopsis Thaliana] (GB:P31167;GB:Q9M9K2); similar to AAC2 (ADP/ATP CARRIER 2), binding [Arabidopsis thaliana] (TAIR:AT5G13490.2); similar to ADP,ATP carrier protein, mitochondrial precursor (ADP/ATP translocase) (Adenine nucleotide translocator) (ANT) (GB:P27081); similar to ADP,ATP carrier protein 1, mitochondrial precursor (ADP/ATP translocase 1) (Adenine nucleotide translocator 1) (ANT 1) (GB:O22342); similar to nucleotide translocator (GB:1908224A); contains InterPro domain Adenine nucleotide translocator 1; (InterPro:IPR002113); contains InterPro domain Mitochondrial carrier protein; (InterPro:IPR002067); contains InterPro domain Mitochondrial substrate carrier; (InterPro:IPR001993) 0.0039041070198671 0.0482045453418911 0.962679853375412 1 0.772647752318102 24.8016616478451 0.0039041070198671 0.0644988613428725
AT2G35690_at 5.65855124950447 6.1183334690982 5.68316545681847 5.6584563173788 6.72798185853777 6.75892522179309 6.40064112048327 6.11875498736706 6.7091249827844 6.41290388941056 6.19668934703959 5.99751740644227 5.95115233864395 6.8987890340361 6.17849045436426 6.9371569550647 6.37680316987284 6.9514361052689 6.61201983652829 0.189065067814849 0.184684657679450 0.188839879825058 0.186983922607724 0.18110582553009 0.190746196676611 0.179682667039513 0.185425855275236 0.198959874828488 0.183446066843412 0.186052464737084 0.181878635092105 0.184347183628350 0.179682667039513 0.195764100000798 0.182847972069596 0.196423320732135 0.179825428991387 0.183670401222542 2 2 + 15009449 15009935 15009751.818 15006833 15010145 + gene protein_coding_gene FALSE TRUE AT2G35690.1 ACX5 (ACYL-COA OXIDASE 5); acyl-CoA oxidase Encodes a putative acyl-CoA oxidase. Expressed uniformly in seedlings and throughout development. Identical to Putative acyl-coenzyme A oxidase 1.2, peroxisomal (EC 1.3.3.6) (ACX1.2) [Arabidopsis Thaliana] (GB:Q9ZQP2); similar to ACX1 (ACYL-COA OXIDASE 1) [Arabidopsis thaliana] (TAIR:AT4G16760.1); similar to peroxisomal acyl-CoA oxidase 1A [Lycopersicon esculentum] (GB:AAW78689.1); similar to Chain A, X-Ray Crystal Structure Of Leacx1, An Acyl-Coa Oxidase From Lycopersicon Esculentum (Tomato) (GB:2FON); similar to acyl-CoA oxidase [Medicago truncatula] (GB:ABE83706.1); contains InterPro domain Acyl-CoA oxidase, C-terminal; (InterPro:IPR002655); contains InterPro domain Acyl-CoA oxidase; (InterPro:IPR012258); contains InterPro domain Acyl-CoA dehydrogenase, middle and N-terminal; (InterPro:IPR009100); contains InterPro domain Acyl-CoA dehydrogenase C-terminal-like; (InterPro:IPR009075); contains InterPro domain Acyl-CoA dehydrogenase, central region; (InterPro:IPR006091); contains InterPro domain Acyl-CoA dehydrogenase, type1/2, C-terminal; (InterPro:IPR013764) -0.00447493894036111 -0.0478420433266736 0.962960263443836 1 0.772629485267563 12.6476115039140 -0.00447493894036111 0.0935820220140872
AT2G20690_at 7.54597370346284 7.41991549122923 7.5797034333824 7.34115883518135 7.1132627825784 7.364609741619 8.01049704020107 7.9247278182885 6.4847935231707 6.56137016042473 6.9077138445914 7.05963307459688 6.77575753172591 6.6068764768997 7.26597133713259 6.61445700595072 7.06240584320457 6.30758348288554 6.32555816051863 0.201614388279560 0.201061314802488 0.209334241121510 0.205938321055433 0.205834319852511 0.211188167576193 0.211017746016631 0.206468815474413 0.212614699756529 0.209154770067073 0.209847633343085 0.206495333514107 0.209933684933718 0.204741339892631 0.207276367555756 0.201061314802488 0.205070903894049 0.213103563365851 0.219854254352003 2 2|0 +|/ 8930649 8931035 8930820.7 8930386 8932055 + gene protein_coding_gene FALSE TRUE AT2G20690.1 lumazine-binding family protein similar to riboflavin synthase [synthetic construct] (GB:AAT99438.1); contains InterPro domain Lumazine-binding protein; (InterPro:IPR001783) -0.00389280259319769 -0.0478359371772755 0.962964986845733 1 0.772629178749228 14.1786263254069 -0.00389280259319769 0.06551572830527
AT2G15695_at 9.39528404126335 9.36420764158982 9.5277482607214 9.6473200426236 9.88141677261301 9.73048504059594 9.81885081729779 9.81369542141634 9.19104289216111 9.09858479762799 8.77181423892383 8.59668284476337 9.30790758280868 9.0626375383576 8.78717528079455 9.22241871935612 9.53881861250072 9.02269400553065 9.14332476244345 0.101659293982365 0.101388589650699 0.105331553251432 0.101439073817263 0.101131159726461 0.103187784682690 0.103844169069327 0.100920795506837 0.102480307859346 0.106345924288104 0.108724539317312 0.105567228795554 0.105639698029979 0.102406918164556 0.110713121675789 0.0990992696233 0.105892024951993 0.102062820854320 0.105052281395245 2 0|2 /|- 6841337 6841749 6841506.3 6840962 6843516 - gene protein_coding_gene FALSE TRUE AT2G15695.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G44250.1); similar to Protein of unknown function DUF829, eukaryotic [Medicago truncatula] (GB:ABE83368.1); contains InterPro domain Protein of unknown function DUF829, eukaryotic; (InterPro:IPR008547) -0.0034079162257028 -0.047621331749603 0.96313099550257 1 0.772618430757653 18.7389190482436 -0.0034079162257028 0.0337656743703755
AT4G36630_at 7.00744277079415 7.2032691211197 6.67458232418274 7.2515445568446 7.20220681376522 6.57737785806359 7.03601554814151 7.23314667497513 6.37304331460681 6.53507363036228 6.54151171976647 6.49802287772153 6.56049686885017 6.94943036084809 6.55533321898766 6.78539620729256 6.27384066305986 6.57045018067022 6.32274383474003 0.200002723821954 0.202564211554387 0.203733993824039 0.197136136157659 0.192446788299204 0.207536247318569 0.199876275388912 0.199272471864723 0.208647801127455 0.189744756954427 0.20077720387894 0.188158307195379 0.192834238772979 0.198643458074241 0.188158307195379 0.188158307195379 0.196072278457808 0.194482573532993 0.190784096487787 4 4|0 -|/ 17272148 17272840 17272499.7 17271832 17276621 - gene protein_coding_gene FALSE TRUE AT4G36630.1 EMB2754 (EMBRYO DEFECTIVE 2754); small GTPase regulator similar to TVLP1 [Oryza sativa (indica cultivar-group)] (GB:ABB45382.1); similar to Citron-like; WD40-like [Medicago truncatula] (GB:ABE78879.1); similar to TGF beta receptor associated protein-like protein [Oryza sativa (japonica cultivar-group)] (GB:AAL58199.1); contains InterPro domain WD40-like; (InterPro:IPR011046); contains InterPro domain Citron-like; (InterPro:IPR001180) -0.00600865248186278 -0.047509659622005 0.963217380555146 1 0.772612857035985 13.5242468028455 -0.00600865248186278 0.154833670401612
ATCG00570_at 12.1447828176416 12.5221571664292 12.312220078134 12.5438948901616 12.2770040019093 12.1787721167239 12.5943131732144 12.7667112509449 12.9629100343279 12.7972867152649 13.2177683748154 13.2932300480505 13.1207750678876 13.0328670968640 12.8433286016966 13.1988452247040 12.6684500346588 13.0952697788296 12.8538508029717 0.0913313616431237 0.0853376653263778 0.0897975802294631 0.0893626472350453 0.0873353589301108 0.0897497796570951 0.0877278513365269 0.090303660417766 0.0988666768912629 0.0930891584313119 0.0913916964234491 0.0880130063750229 0.0939569584968706 0.0943208918900361 0.0896129430790546 0.0891089885561125 0.085237542574372 0.0962376992385955 0.0890733203232587 C C - 63942 64025 63985.364 63942 64061 - gene protein_coding_gene FALSE TRUE ATCG00570.1 PSII cytochrome b559 Identical to Cytochrome b559 beta subunit (PSII reaction center subunit VI) (psbF) [Arabidopsis Thaliana] (GB:P62095;GB:P05172;GB:Q8HS05); similar to cytochrome b559 (GB:1011228A); similar to cytochrome b559 beta chain [Spinacia oleracea] (GB:NP_054951.1); similar to Cytochrome b559 beta subunit (PSII reaction center subunit VI) (GB:P46613); contains InterPro domain Photosystem II protein cytochrome b559; (InterPro:IPR006216); contains InterPro domain Photosystem II protein cytochrome b559, beta subunit; (InterPro:IPR006241); contains InterPro domain Photosystem II protein cytochrome b559, N terminal; (InterPro:IPR013081) 0.00422463196241596 0.0474217654166469 0.96328537232704 1 0.772608479303393 25.3825649182081 0.00422463196241596 0.0839725743983355
AT1G01780_at 4.85845700329343 4.48206780028728 4.97588009005097 4.39356650666693 5.87216469053412 4.24181554960699 4.24011034906555 3.65442028472751 5.21652423848986 4.86920488472492 5.01694674419491 4.5387183073805 4.60039595785723 4.79462005955283 4.84013773810625 4.91399573583871 4.69071230112303 4.36721959826107 5.69753132071075 0.232733354960842 0.230613644609309 0.239783002020244 0.234066050219412 0.235505659121398 0.245089432367521 0.235242298062001 0.236795223563734 0.250892982655102 0.230183232956971 0.229515748165333 0.228597308326374 0.236060415262481 0.232309700111434 0.234518768356218 0.228597308326374 0.23573127311179 0.230645693316926 0.238196660552201 1 1|0 +|/ 283015 284036 283681.222 282761 284245 + gene protein_coding_gene FALSE TRUE AT1G01780.1 LIM domain-containing protein similar to LIM domain-containing protein [Arabidopsis thaliana] (TAIR:AT2G45800.1); similar to LIM domain protein PLIM2a [Populus tremula x Populus alba] (GB:ABK58466.1); contains InterPro domain LIM, zinc-binding; (InterPro:IPR001781) 0.0106746702593926 0.045836097181666 0.964512041690748 1 0.772530893715102 9.58052534424468 0.0106746702593926 0.322914118866313
AT1G08380_at 13.8500871795834 13.9070947765557 13.9059007002242 13.8886897958347 13.9229568588702 13.8468727076672 14.0073386789122 14.2483263526205 14.5791063810925 14.4334340581514 14.7077334642895 14.7002614483079 14.6251173538385 14.5863402636793 14.6033979003037 14.5623894721486 14.2539521181749 14.6265509437249 14.3805819987014 0.0539663914528336 0.0518276079164218 0.0508331471160843 0.0526423283731808 0.0507900116500662 0.0552219577427164 0.0516332354504581 0.0508020296754531 0.0543233283845856 0.0503134181592094 0.0520110124828171 0.051253905643345 0.051448844278159 0.0554362849324572 0.0504748500563171 0.0506601675021813 0.057787877050165 0.0536004322089409 0.0508172861176946 1 1 - 2641030 2641705 2641294.545 2640810 2641825 - gene protein_coding_gene FALSE TRUE AT1G08380.1 PSAO (photosystem I subunit O) Encodes subunit O of photosystem I. similar to putative 16kDa membrane protein [Nicotiana tabacum] (GB:CAB75430.1) 0.00336849665389183 0.0452578138822606 0.964959425348158 1 0.772503254940894 28.4709543895536 0.00336849665389183 0.0449309160188828
AT4G00895_at 9.24224642011479 9.49125539602088 9.30066268536155 9.4323372659427 9.4722741193058 9.42690995160438 9.65331594497947 9.80483770495284 9.4961499595724 9.52849616401888 9.59325587044177 9.72618200059572 9.4808432647376 9.32292719792533 9.69399531122167 9.79129645126985 9.36475268950023 9.51597550961681 9.26001464523933 0.104026954732914 0.104645845971822 0.108799804597893 0.103144583736779 0.10266901876023 0.106589039601314 0.104207299661432 0.10266901876023 0.110469313673597 0.104789912991707 0.107496325250455 0.10266901876023 0.106845261529605 0.120637799498637 0.10266901876023 0.10266901876023 0.107934447490555 0.106699765326314 0.106941767171904 4 4 + 381943 382149 382043.545 381788 382643 + gene protein_coding_gene FALSE TRUE AT4G00895.1 ATP synthase delta chain-related contains InterPro domain ATPase, F1 complex, OSCP/delta subunit; (InterPro:IPR000711) -0.00346729016331504 -0.0445158481104661 0.965533459637084 1 0.772468306736611 18.9726668326305 -0.00346729016331504 0.0559050718890566
AT2G40490_at 8.98050311639316 9.15830484815302 8.16339940823086 8.1434119503183 9.06602653882086 8.53695786348522 9.31026334376434 9.19234002370594 9.30635691835938 9.06924867743294 9.82720450109107 10.2858402153171 9.41594512738016 9.7278599524576 10.4665933516129 9.76405585263664 9.22361647100835 9.26224107942317 8.84104885770928 0.133896960966027 0.129739891120293 0.149567914345467 0.150858917918345 0.137954204559924 0.134528908492499 0.138453496765415 0.130859475412325 0.140189483427257 0.136925804248678 0.129739891120293 0.129739891120293 0.130047583559801 0.131580543278611 0.133260278037779 0.129739891120293 0.138702263439212 0.138430076907753 0.140163569339269 2 2|0 +|/ 16921408 16922022 16921728.8 16919923 16922255 + gene protein_coding_gene FALSE TRUE AT2G40490.1 HEME2; uroporphyrinogen decarboxylase Identical to Uroporphyrinogen decarboxylase, chloroplast precursor (EC 4.1.1.37) (URO-D) (UPD) [Arabidopsis Thaliana] (GB:O22886); similar to HEME1, uroporphyrinogen decarboxylase [Arabidopsis thaliana] (TAIR:AT3G14930.2); similar to Uroporphyrinogen decarboxylase, chloroplast precursor (URO-D) (UPD) (GB:Q42967); contains InterPro domain Uroporphyrinogen decarboxylase (URO-D); (InterPro:IPR000257); contains InterPro domain Uroporphyrinogen decarboxylase HemE; (InterPro:IPR006361) -0.00422623754580842 -0.0440009805313587 0.965931808080972 1 0.772444394702344 18.2283447466255 -0.00422623754580842 0.0987826167078908
AT1G07360_at 8.49555014858626 8.80504823775314 8.42596766002875 8.59492632244238 8.62471817208386 8.69733391160453 8.58890039847267 8.77310481276656 7.93534041389016 8.02550999877014 7.95321654899564 8.20802260126946 8.2898052833273 8.10477644295815 8.14218669736939 7.96734661110732 7.80965733929332 8.17850993110899 8.02289030905152 0.160550250612938 0.157166900885825 0.156933678750427 0.160520050621263 0.158301407556198 0.157159725572837 0.165778198285806 0.156942413058870 0.183648101897123 0.157843370601307 0.173451140771157 0.159035264655657 0.161313797089090 0.175979730937932 0.170492159619356 0.155378863828779 0.177156761049907 0.157131691595428 0.161578462853410 1 1 - 2260565 2261135 2260826.273 2260387 2262863 - gene protein_coding_gene FALSE TRUE AT1G07360.1 zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein similar to zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] (TAIR:AT2G29580.1); similar to RRM-containing RNA-binding protein-like protein [Solanum tuberosum] (GB:ABC01900.1); similar to RRM-containing RNA-binding protein-like protein [Solanum tuberosum] (GB:ABB72821.1); similar to U2 auxiliary factor small subunit [Medicago truncatula] (GB:ABE89510.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain Zinc finger, CCCH-type; (InterPro:IPR000571); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.00359777925165772 0.0432785800786525 0.96649073984904 1 0.772411312937073 16.6638289192169 0.00359777925165772 0.0699835304239701
AT2G32520_at 9.23463766809965 9.30490600747985 9.12571721835153 9.1726754835205 8.97175883165089 8.5170163002042 8.75351685197317 8.88115113657805 8.7120212090982 8.4521388309806 8.45739787515023 8.75572789772262 8.38654407177243 8.6883007209681 8.39683484322429 8.63911412410552 8.19888273051996 8.51370131089631 8.03656068809296 0.166009518157335 0.154469746514821 0.154412310348956 0.160824711019562 0.158804696174165 0.172657898644193 0.154590988354943 0.161385235422349 0.159249097730379 0.155146713805173 0.156311559155223 0.159540842696867 0.156093261148667 0.157611783354180 0.162183917719393 0.155527762768996 0.173293180041187 0.161935448808221 0.159895881715384 2 0|2 /|- 13812912 13813486 13813164.778 13812596 13814613 - gene protein_coding_gene FALSE TRUE AT2G32520.1 dienelactone hydrolase family protein similar to dienelactone hydrolase family protein [Arabidopsis thaliana] (TAIR:AT1G35420.1); similar to Predicted hydrolase related to dienelactone hydrolase (ISS) [Ostreococcus tauri] (GB:CAL50216.1); similar to Os01g0531500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043244.1); contains InterPro domain Dienelactone hydrolase; (InterPro:IPR002925) 0.00378087323505905 0.0426414511459303 0.966983712034531 1 0.772382590379924 17.4475740319917 0.00378087323505905 0.0830345056451627
AT3G55760_at 7.1145053126081 6.86500886452052 6.05025176798048 5.6342564146508 6.27838063988136 5.83222987882701 6.16565234575755 6.37247533838889 4.85677110186788 5.7681974166145 6.03203440202802 6.1677382653895 6.05805239738854 5.99192503785892 6.2634661408601 6.19192370912213 5.64541292788696 5.59192698522133 5.33853554108075 0.183826848905425 0.177206300544480 0.17817323612979 0.178717642223456 0.176341716301382 0.182785078316453 0.176341716301382 0.185631161646039 0.185593206432970 0.177628568631854 0.176341716301382 0.180340402315391 0.176341716301382 0.18695982798089 0.187303634796557 0.179240449369651 0.185852460713318 0.183573886579801 0.179843024658713 3 3 + 20713089 20713828 20713604.182 20711414 20714035 + gene protein_coding_gene FALSE TRUE AT3G55760.1|AT3G55760.2 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G42430.1); similar to hypothetical protein [Trifolium pratense] (GB:BAE71279.1) -0.00449441330939582 -0.0421251946235134 0.967383171393204 1 0.772359629178794 11.9460840718637 -0.00449441330939582 0.119536419331701
AT3G11330_at 5.91129822638804 6.36677348184841 6.61984448433713 6.75232280025721 5.87361239075869 6.10295111091902 6.17919436268165 6.65823242370298 6.02756792395909 5.6629560312287 5.58989942970206 5.83848915190116 5.91235610391959 6.30290118621537 5.70340497952507 6.10051489453526 5.84819736716527 6.1196143680911 6.23867124462387 0.219946564863666 0.215119286653837 0.223444544306270 0.224748593048547 0.215391856101540 0.224985393343148 0.216036292127755 0.222128537577885 0.237044992862873 0.21408224926299 0.215289699940434 0.215694360724855 0.212092128611906 0.221412463606088 0.210219853446725 0.211968789593212 0.220813321495235 0.212131501118501 0.210066165819065 3 3 - 3552337 3552893 3552632.909 3551980 3554769 - gene protein_coding_gene FALSE TRUE AT3G11330.1 leucine-rich repeat family protein similar to leucine-rich repeat family protein [Arabidopsis thaliana] (TAIR:AT5G05850.1); similar to OSIGBa0116M22.1 [Oryza sativa (indica cultivar-group)] (GB:CAH66934.1); similar to Os02g0593600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047301.1); similar to leucine-rich-repeat protein [Helianthus annuus] (GB:CAA57523.1); contains InterPro domain Leucine-rich repeat; (InterPro:IPR001611); contains InterPro domain Leucine-rich repeat, typical subtype; (InterPro:IPR003591) 0.00441592905369248 0.0406340760416677 0.968536995522271 1 0.772294879520805 12.2596889526462 0.00441592905369248 0.123231681125432
AT2G18770_at 6.17001660914922 6.45209604608839 5.82646404340061 6.09659562967709 6.6888565889031 6.19877175891903 6.65610074351184 6.42878398423308 6.09057447272964 6.26887121696307 6.61040396107852 6.65019131834854 6.28416659373993 6.92267314633108 6.37818618361483 6.68765219388516 5.86124739310704 6.54685985783797 6.47166059085075 0.212612112725641 0.218068256392345 0.22293119931443 0.216330811841467 0.20849869205996 0.217986953000091 0.227755626151391 0.208905273753076 0.214261742928080 0.216100328593906 0.214344498279059 0.209791188939588 0.218236326324856 0.213834669361190 0.211234923898790 0.214779018266415 0.230145876205199 0.214192267308425 0.213228345528786 2 2 + 8142431 8143357 8142970.273 8141721 8143642 + gene protein_coding_gene FALSE TRUE AT2G18770.1 signal recognition particle binding similar to signal recognition particle binding [Arabidopsis thaliana] (TAIR:AT5G05670.1); similar to AAA ATPase; Small GTP-binding protein domain [Medicago truncatula] (GB:ABE88783.1); contains domain SIGNAL RECOGNITION PARTICLE RECEPTOR BETA SUBUNIT RELATED (PTHR19326:SF4); contains domain FAMILY NOT NAMED (PTHR19326); contains domain no description (G3D.3.40.50.300); contains domain P-loop containing nucleoside triphosphate hydrolases (SSF52540) -0.00422009318780137 -0.0403909205608016 0.968725156167617 1 0.772284542017649 12.6995646794056 -0.00422009318780137 0.115363479259502
AT3G44020_at 6.04078947978089 6.34759727024277 5.99458048779889 6.07000539020387 6.73824584270022 6.03115509713674 7.3344810975057 7.09728660005741 6.41683786218065 6.39709909892413 6.88060806456953 6.9862863020043 7.15571459929945 6.96327624113713 6.52021866750859 7.25724611946444 6.71212179528997 6.50241212166071 6.28483306237969 0.181052487586849 0.170992771403420 0.177480701068440 0.171036479504346 0.175881455537208 0.183730493803344 0.171836554853227 0.175185845488760 0.181017704476886 0.17250702389016 0.179621612905197 0.176861653629238 0.173145128336609 0.178168806979021 0.179379940433303 0.174025843272155 0.182142505431474 0.178087183822113 0.173041170470502 3 3|0 +|/ 15812416 15813517 15812635.4 15812359 15813717 + gene protein_coding_gene FALSE TRUE AT3G44020.1 thylakoid lumenal P17.1 protein similar to Os01g0930000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045285.1); similar to unnamed protein product [Ostreococcus tauri] (GB:CAL51715.1); contains domain TNF receptor-like (SSF57586) 0.0047184534675897 0.0399709678400317 0.969050132421119 1 0.772266834219185 13.0760137398591 0.0047184534675897 0.140169843173325
AT2G39990_at 8.360735839261 8.83097335374012 8.33992492736203 8.61368797680129 8.72936146456899 8.79291392063694 8.28060612273931 8.87663771681126 8.26130077946615 7.87603392922763 7.7282548418223 8.38154661988281 8.04452790850368 7.85924363977432 8.03438331542755 7.92442235629527 7.78146614982077 8.1197420234061 7.9380207320282 0.170922105330866 0.174020056151907 0.170884643530506 0.167599723095782 0.173589454288097 0.171916568028966 0.181630983792126 0.172706700388398 0.176580607643484 0.177587973039381 0.171942270726546 0.167599723095782 0.177026435735513 0.176939589269351 0.173460225412080 0.171723673781682 0.183701382551979 0.172675132987095 0.174092350331151 2 0|2 /|- 16705476 16706297 16705981.6 16705170 16707090 - gene protein_coding_gene FALSE TRUE AT2G39990.1 EIF2 (eukaryotic translation initiation factor 2); translation initiation factor translation initiation factor eIF2 p47 subunit homolog Identical to Eukaryotic translation initiation factor 3 subunit 5 (eIF-3 epsilon) (eIF3 p32 subunit) (eIF3f) (TIF3F1) [Arabidopsis Thaliana] (GB:O04202); similar to MEE34 (maternal effect embryo arrest 34) [Arabidopsis thaliana] (TAIR:AT3G11270.1); similar to Os05g0104800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054405.1); similar to 26S proteasome regulatory subunit S12 isolog-like protein [Castanea sativa] (GB:AAL15890.1); contains InterPro domain Mov34/MPN/PAD-1; (InterPro:IPR000555); contains InterPro domain Mov34-1; (InterPro:IPR003639) -0.00459315458483411 -0.0389234092434590 0.969860801727634 1 0.772223468993624 16.6077635837938 -0.00459315458483411 0.140095430507607
AT1G06790_at 4.84345443150221 4.79286969508016 5.09203614510639 5.18086336592047 4.80058481707393 4.94160460869453 5.32768645019570 5.09499502283598 4.62065062111695 4.94193701152752 4.63619554788729 4.76685663427073 5.01257408522614 4.65958209596231 5.09186924648802 4.73089671493838 5.21451793178239 4.75273006935706 4.96120813054013 0.195335080985752 0.187541014416884 0.203509402088116 0.190581735556082 0.190461435013785 0.201255562352629 0.196944792109085 0.191310927812483 0.194819421587386 0.192228210095081 0.189190550196005 0.188387283096465 0.187541014416884 0.191277627709376 0.19215235650474 0.188922411033755 0.192514634769216 0.192959101118077 0.192467454489657 1 1|0 +|/ 2087667 2089234 2088409.778 2087231 2089785 + gene protein_coding_gene FALSE TRUE AT1G06790.1|AT1G06790.2 RNA polymerase Rpb7 N-terminal domain-containing protein similar to PREDICTED: similar to polymerase (RNA) III (DNA directed) polypeptide H [Tribolium castaneum] (GB:XP_971430.1); similar to Os07g0477000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059628.1); contains InterPro domain RNA polymerase III, subunit Rpc25; (InterPro:IPR013238); contains InterPro domain RNA polymerase Rpb7, N-terminal; (InterPro:IPR005576) 0.00295418531974678 0.038846804477562 0.969920084965285 1 0.772220342995252 9.85897083961813 0.00295418531974678 0.0502993949336744
AT3G04680_at 5.40894698702274 5.97700562906308 5.40603094904651 5.49026116440234 5.41804057477437 5.6408418105549 5.73267944638026 5.56806323015145 5.34860302575953 5.25154062360515 5.74629239515813 5.96149564658352 5.57856551930592 5.09248120183195 5.40347555431013 5.42435228799411 5.37321197405176 5.01369872181554 5.17509703316702 0.250729374976663 0.250033759903822 0.248411361961923 0.258694645852249 0.246312996074829 0.264772162014615 0.249654339271903 0.250045360817811 0.258224994671502 0.253561956706978 0.248277079525251 0.24883365714498 0.248828287611609 0.248978026348064 0.254209003814555 0.247376016539632 0.260565849388522 0.257639474586359 0.248131771882646 3 0|3 /|- 1270081 1270772 1270340.7 1269859 1272968 - gene protein_coding_gene FALSE TRUE AT3G04680.1|AT3G04680.2 pre-mRNA cleavage complex family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT5G39930.1); similar to Pre-mRNA cleavage complex II Clp1 [Medicago truncatula] (GB:ABE91353.1); contains InterPro domain Pre-mRNA cleavage complex II Clp1; (InterPro:IPR010655) 0.00395145166381694 0.0387915925096735 0.969962812771493 1 0.772218093786663 10.9340388356621 0.00395145166381694 0.110338361602526
AT1G55670_at 13.7336203180556 13.9418726786771 13.6644187705475 13.8020982758701 13.8522358867459 13.7167965067633 13.8826711150967 14.1813265215076 14.4907834248521 14.3987942798488 14.7411140015898 14.7351373412502 14.6058202637134 14.601910127298 14.5683188705396 14.5504041027453 14.1439698161242 14.7302258607149 14.3549176057816 0.0595044148353493 0.0577437434724815 0.0625819538405891 0.0607867089953075 0.0585390375560043 0.061836377362737 0.0605629625034006 0.0577437434724815 0.0615333242727413 0.0587363370762735 0.0597478875973599 0.0578897849675837 0.0577437434724815 0.0636769083956116 0.061459740028136 0.0584996011322789 0.0650013554224136 0.0596267184277158 0.0597395229567378 1 1 - 20806542 20806871 20806712.091 20806336 20807115 - gene protein_coding_gene FALSE TRUE AT1G55670.1 PSAG Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin. Identical to Photosystem I reaction center subunit V, chloroplast precursor (PSI- G) (PSAG) [Arabidopsis Thaliana] (GB:Q9S7N7;GB:Q42310); similar to Photosystem I reaction center subunit V, chloroplast precursor (PSI-G) (Photosystem I 9 kDa protein) (GB:P12357); contains InterPro domain Photosystem I psaG/psaK protein; (InterPro:IPR000549) -0.00310226025822402 -0.0370767249827112 0.971289976151203 1 0.772149826181884 28.3466021682368 -0.00310226025822402 0.0713236287541618
AT1G77800_at 7.8302817547324 8.19908940375449 8.14563198843625 8.35415611551042 8.56568547647796 7.72167919594259 8.55880509626423 8.31738004035834 7.6705215390138 8.1592704010221 8.19627997527888 7.93424415597193 8.1638542541817 8.13160002003438 7.63393137812939 8.52515261348046 7.74740243392908 7.7332612800536 8.0765821682 0.173964335547374 0.165843579253992 0.169135482282586 0.164053765571503 0.169368061931174 0.167074470202402 0.164286891655968 0.172531200937771 0.183015055915296 0.163236288227972 0.164623520847488 0.163236288227972 0.163236288227972 0.166807589762262 0.173367504496192 0.163236288227972 0.177285959830307 0.179072854438705 0.163236288227972 1 1 + 29264569 29265276 29264959.2 29258290 29265511 + gene protein_coding_gene FALSE TRUE AT1G77800.1 PHD finger family protein similar to ATX1 (ARABIDOPSIS HOMOLOGUE OF TRITHORAX), histone-lysine N-methyltransferase/ phosphatidylinositol-5-phosphate binding [Arabidopsis thaliana] (TAIR:AT2G31650.1); similar to PHD finger protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD35905.1); contains InterPro domain Zinc finger, FYVE/PHD-type; (InterPro:IPR011011); contains InterPro domain Zinc finger, PHD-type; (InterPro:IPR001965) 0.00491175739244842 0.0364793342723438 0.971752328764254 1 0.77212676904738 16.2000922005818 0.00491175739244842 0.168684721993327
AT4G18390_at 8.64126758531507 9.11821471404377 8.44958015368226 8.69070420817861 9.45902692468035 8.72978661225664 9.45788921998 9.5611736931739 8.38447937801661 8.66863198809817 8.81623649742268 8.77604613305012 9.21574843082954 9.00233977876437 8.3983405133201 8.71844600054025 8.81941649405319 8.73797331055772 8.26373349085263 0.152606731469987 0.139729030751312 0.160689566103304 0.146896545957492 0.140139354994311 0.160367309589050 0.143316560343472 0.141873144546956 0.159812709974798 0.143659816691006 0.143784367806072 0.139729030751312 0.139900805304976 0.142257269121627 0.15418956005189 0.139729030751312 0.151442248918176 0.142109057147259 0.151510523146307 4 4 - 10163302 10163778 10163517.636 10162964 10165573 - gene protein_coding_gene FALSE TRUE AT4G18390.1|AT4G18390.2 TCP family transcription factor, putative similar to TCP24, transcription factor [Arabidopsis thaliana] (TAIR:AT1G30210.2); similar to TCP family transcription factor [Dendrobium hybrid cultivar] (GB:ABF61889.1); contains InterPro domain TCP transcription factor; (InterPro:IPR005333) 0.00462914036636497 0.036160217414979 0.97199931499458 1 0.772114605698649 17.6382137291504 0.00462914036636497 0.157477698674505
AT1G04200_at 5.02793351888478 5.41142613091377 4.61851936507889 4.9433135549623 5.22756114099321 3.77028239476443 5.18499222891514 4.72849415198082 4.27424596250848 4.80243523960813 5.73974257302221 6.05052399402399 4.78793028017952 4.92724928363707 5.22396027540298 5.30915866122252 4.05046215480557 5.02542860556404 5.04037790019856 0.254396543050543 0.241896264662191 0.249886547333765 0.251090611920703 0.243721489801398 0.247804694953316 0.249009982472268 0.24615474405024 0.255929876437872 0.252175077369679 0.24671044550387 0.249342404689159 0.241896264662191 0.251413829850694 0.251396860029499 0.241896264662191 0.256574633076174 0.258873281551600 0.249292492665585 1 1|0 +|/ 1112556 1113848 1113075.1 1109481 1114106 + gene protein_coding_gene FALSE TRUE AT1G04200.1 similar to PREDICTED: similar to dymeclin [Rattus norve (GB:XP_001054727.1); similar to Os01g0773100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044398.1); contains domain SUBFAMILY NOT NAMED (PTHR12895:SF1); contains domain FAMILY NOT NAMED (PTHR12895) -0.00733589134003587 -0.0360363405012723 0.972095192620347 1 0.772109912834224 9.78656198377198 -0.00733589134003587 0.278215160520826
AT2G44970_at 7.83795995885064 8.23202251063195 8.07812109305869 8.31409952625052 8.37929892869207 8.55394119284995 8.25998366510725 8.26768975345599 7.91888367498934 7.90908251495708 7.73750480766005 7.40894840895432 8.00475205302 7.59327594959027 7.2799224511249 7.63553947142206 8.12095869698587 7.75642760869542 7.77522270105926 0.180318514851749 0.168774436631429 0.180862356580929 0.186765630767249 0.169432408877398 0.188506696364492 0.169066325443763 0.17435081375913 0.215978854561877 0.171107330227651 0.179388699852172 0.178505448015921 0.179725502450867 0.194238105633013 0.172677782434036 0.173027313241330 0.188020138242374 0.187498321366497 0.183282563661080 2 2 - 18556121 18556796 18556350.545 18555898 18559234 - gene protein_coding_gene FALSE TRUE AT2G44970.1|AT2G44970.2 lipase-related similar to Os12g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065962.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG21852.1)|similar to Os12g0110100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001065962.1); similar to expressed protein [Oryza sativa (japonica cultivar-group)] (GB:ABG21852.1); contains domain no description (G3D.3.40.50.1820); contains domain alpha/beta-Hydrolases (SSF53474) 0.00319388189886838 0.0356574126444893 0.972388476248112 1 0.772095657743692 16.0203374842456 0.00319388189886838 0.0850490028566374
AT2G41960_at 7.59738055765665 8.06336541977988 7.83398991164207 7.81209303291881 8.10209116642345 7.94462941376299 7.98351472963886 7.93815793811055 7.58172600764189 7.35213292826361 7.21717582242658 7.45318248742909 7.56086434875004 7.54369748785279 7.35988246001208 7.61829018587446 7.28122003621247 7.47108215968465 7.48256086709083 0.174917250867092 0.158040680178977 0.153702692264252 0.162213089766117 0.156816369126379 0.162504742182105 0.159748252450151 0.157557769164848 0.167192583131929 0.153702692264252 0.161883784830420 0.155309933195699 0.161175283597422 0.158845245288586 0.165983288590031 0.153702692264252 0.168811636164454 0.16308368078958 0.158591146013359 2 2 - 17521438 17521887 17521712 17521202 17526371 - gene protein_coding_gene FALSE TRUE AT2G41960.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G58050.1); similar to Os03g0226600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049440.1); similar to Os10g0105400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001064024.1); similar to Unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAK00428.2) -0.00318467045574611 -0.0354619515748891 0.972539761482297 1 0.772088363481094 15.3645599251728 -0.00318467045574611 0.0855654793402718
AT2G04845_at 4.80636673021004 4.97267136697419 5.1415213668727 4.92042032127059 5.17966159844981 5.14211231507152 6.00026260336823 5.96599437249798 4.89551009981731 4.7756345154394 5.38105085270613 5.5212981453602 5.12687598650136 5.54046172105036 5.02235470797609 5.32128807312065 4.59437922474134 5.11875455251592 4.93363761236995 0.244686853121588 0.23723927007994 0.238876084471915 0.241005599114242 0.239525959718611 0.252986852821709 0.252929598291343 0.255134515495579 0.250829895352503 0.237342227615319 0.241259445212722 0.23723927007994 0.242074853080613 0.244776432351586 0.237889741099413 0.237796673577770 0.256949296039946 0.242389945654265 0.23895486706869 2 2|0 -|/ 1702354 1703874 1702885.222 1702218 1704000 - gene protein_coding_gene FALSE TRUE AT2G04845.1|AT2G04845.2 GCN5-related N-acetyltransferase (GNAT) family protein similar to acetyltransferase, GNAT family protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:ABF94437.1); contains InterPro domain GCN5-related N-acetyltransferase; (InterPro:IPR000182) -0.00267385119608321 -0.035394922315748 0.972591641839128 1 0.772085871296674 10.3019106596087 -0.00267385119608321 0.0486795002094176
AT1G20580_at 8.12253951500838 8.36569066687007 8.04690794965145 7.89457393972105 7.93070219622888 7.79511512484016 7.78137807027211 8.30881990251926 7.90835700639123 7.72675252198703 7.88455211839136 8.3380137708596 8.15204174891237 7.96881831341784 8.12981805153798 7.93950334019365 7.73284980727909 8.15167988162708 7.77195095366076 0.147703075421825 0.152053860387238 0.151665298048893 0.148524884667509 0.161760568464676 0.152221626043826 0.144808582240146 0.153788429919345 0.146824587707286 0.149075159981182 0.146206060857895 0.147715923276885 0.144254896900006 0.151318506158393 0.144254896900006 0.148482577379550 0.155882074028417 0.146042980354195 0.145603699653556 1 1|0 +|/ 7129000 7130325 7129664.6 7128874 7130632 + gene protein_coding_gene FALSE TRUE AT1G20580.1 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative similar to SMD3 (SNRNP CORE PROTEIN SMD3) [Arabidopsis thaliana] (TAIR:AT1G76300.1); similar to Os02g0102700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001045599.1); similar to Os03g0240800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049511.1); similar to Like-Sm ribonucleoprotein-related, core [Medicago truncatula] (GB:ABE94617.1); contains InterPro domain Like-Sm ribonucleoprotein-related, core; (InterPro:IPR010920); contains InterPro domain Like-Sm ribonucleoprotein, core; (InterPro:IPR001163); contains InterPro domain Like-Sm ribonucleoprotein, eukaryotic and archaea-type, core; (InterPro:IPR006649) 0.00351194947864597 0.0351505971002352 0.972780749663762 1 0.772076827056241 15.9504724821591 0.00351194947864597 0.106524511141596
AT3G16940_at 7.66386180386773 7.32510349295694 8.08865896953183 7.83473985490522 8.20893186840916 7.71085536148022 7.74295282831516 7.5332040612028 7.45688229749523 7.82962101835678 7.47687310653422 7.19865344533901 7.64793952367248 7.31565981939426 6.5690685053631 7.73997026482972 7.3655360644294 6.80161952377563 7.71230822865166 0.152595356119898 0.146601008865715 0.142497012623128 0.150919381090779 0.151958818482572 0.158148847525670 0.146592919948746 0.154935566850927 0.165528872453170 0.143439083838313 0.142238643504383 0.150226679528968 0.145148455599423 0.152701310367335 0.164853138960047 0.142238643504383 0.153444062932427 0.162040080755610 0.142238643504383 3 3|0 +|/ 5785138 5785961 5785491.667 5781781 5785991 + gene protein_coding_gene FALSE TRUE AT3G16940.1 calmodulin-binding protein similar to calmodulin-binding protein [Arabidopsis thaliana] (TAIR:AT4G16150.1); similar to IQ calmodulin-binding re (GB:ABE83204.1); similar to CaM-binding transcription factor [Oryza sativa] (GB:AAQ07306.1); similar to Calmodulin-binding transcription activator 5 (Signal-responsive protein 6) (Ethylene-induced calmodulin-binding protein f) (EICBP.f) (GB:O23463); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain CG-1; (InterPro:IPR005559); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain IQ calmodulin-binding region; (InterPro:IPR000048) -0.00366975808568526 -0.0345219713985644 0.973267314556375 1 0.772053844940718 15.2288813033345 -0.00366975808568526 0.118805128798840
AT1G63700_at 5.71670511480351 6.11399252655844 5.89625655639139 6.2112087781731 6.20304438082402 6.27577215633931 5.86274920086507 6.27876756143719 5.90689581666213 5.38263082899563 5.16125946465441 5.33816228017312 5.4662725811543 6.05054486703329 5.42841233586938 5.49807038485421 5.28813055971893 5.65160615051315 5.64812352869177 0.270463578789064 0.261295778456757 0.258310670446930 0.264340302179588 0.262418988406515 0.264990517258966 0.258310670446930 0.280781443614196 0.267117342420564 0.258310670446930 0.264254168293007 0.269404826609655 0.261544762508208 0.258310670446930 0.259832698799590 0.26003956707535 0.260729542743758 0.262715143601006 0.261086930826782 1 1|0 -|/ 23628951 23629519 23629182.8 23628329 23632775 - gene protein_coding_gene FALSE TRUE AT1G63700.1 YDA (YODA); kinase member of MEKK subfamily similar to MAP3KA (Mitogen-activated protein kinase kinase kinase 3), kinase [Arabidopsis thaliana] (TAIR:AT1G53570.3); similar to Os04g0559800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001053542.1); similar to Protein kinase [Medicago truncatula] (GB:ABE85332.1); similar to B0103C08-B0602B01.10 [Oryza sativa (indica cultivar-group)] (GB:CAH68053.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719) -0.00352959821879428 -0.0339825792588056 0.973684820877618 1 0.772034455633094 11.6354073941471 -0.00352959821879428 0.114188909917631
AT2G36950_at 8.0345599462086 8.01528720120023 8.62939284841995 8.95329614902637 9.11675433595968 9.08569253090435 8.90933277769967 8.91648752411124 8.50722857958774 8.88929985210435 7.68468391215791 8.0087787326486 8.49758140133382 8.3139761785192 7.29904452127332 8.98010363355743 8.94346669896373 8.40987234625748 8.82144048972274 0.150629823002558 0.146583963471817 0.157384601830142 0.149632898666191 0.149045646964970 0.148759758904242 0.151854112473259 0.152669920362915 0.166260147276226 0.150800657959566 0.157581886040371 0.155529475788902 0.147733636633713 0.151084744327180 0.198863092809436 0.150781600115286 0.151771400217707 0.169213478103893 0.153886417838065 2 2 + 15523285 15523806 15523529.273 15522212 15524010 + gene protein_coding_gene FALSE TRUE AT2G36950.1 heavy-metal-associated domain-containing protein similar to heavy-metal-associated domain-containing protein [Arabidopsis thaliana] (TAIR:AT5G03380.1); similar to heavy metal-associated domain containing protein, expressed [Oryza sativa (japonica cultivar-group)] (GB:AAP53965.1); contains InterPro domain Heavy metal transport/detoxification protein; (InterPro:IPR006121) 0.00261627902832129 0.0335135334520774 0.974047883910786 1 0.772017843164678 17.2108561151382 0.00261627902832129 0.056422405908702
AT1G43670_at 11.7296221492646 11.4840865004816 11.2663270030505 11.0780511513963 11.7355748332565 11.4149145258732 11.8321570206343 11.5258732280506 11.2290593221393 11.4882238956821 11.5453559880570 11.6207570918486 11.4455720112604 11.4952130014711 11.6441838135443 11.6444668350514 11.4231082195245 11.6578680545335 11.1351500273264 0.0722695514043887 0.0695535794821531 0.0744499194114254 0.0698692833683648 0.0701376569228016 0.0733270976465826 0.0718297933785457 0.0732672464833919 0.0769637086969407 0.0707178912706485 0.0708968423192397 0.0705581150369506 0.0695535794821531 0.0741156760100998 0.0727511457710194 0.0695535794821531 0.074045925942687 0.0758168307908474 0.0762131296728528 1 1|0 +|/ 16471628 16472704 16472169.111 16470484 16472940 + gene protein_coding_gene FALSE TRUE AT1G43670.1 fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative Identical to Fructose-1,6-bisphosphatase, cytosolic (EC 3.1.3.11) (D-fructose-1,6- bisphosphate 1-phosphohydrolase) (FBPase) [Arabidopsis Thaliana] (GB:Q9MA79); similar to fructose-1,6-bisphosphatase, putative / D-fructose-1,6-bisphosphate 1-phosphohydrolase, putative / FBPase, putative [Arabidopsis thaliana] (TAIR:AT3G54050.1); similar to fructose 1,6-bisphosphatase [Brassica rapa subsp. pekinensis] (GB:AAZ86538.1); similar to Fructose-1,6-bisphosphatase, cytosolic (D-fructose-1,6-bisphosphate 1-phosphohydrolase) (FBPase) (GB:P46267); contains InterPro domain Inositol phosphatase/fructose-1,6-bisphosphatase; (InterPro:IPR000146) 0.00310168282421652 0.0331620169855764 0.974319978018635 1 0.772005544613706 22.9301808224813 0.00310168282421652 0.0935725539146335
AT1G01320_at 8.19874625741394 8.07937053063259 8.4662993458236 8.3896065359343 8.49182241461261 8.3273681174286 8.88573038032665 8.75867976738234 7.4914090114021 7.270619193318 7.25899792037727 7.39743393310286 7.82746927809182 7.279214258844 7.49311874052388 7.57404609243981 7.40618782563969 7.10034062777483 7.31832396529534 0.220803311215239 0.217239875168520 0.22380059274052 0.225502302909414 0.233065328417626 0.237388877004897 0.232024459099647 0.233985630135857 0.225625978216768 0.225883215705996 0.216376295339986 0.221131405749534 0.213781374018177 0.220823124349834 0.211489906131808 0.216971948491022 0.217032055278907 0.211954696276749 0.220409749988791 1 1 - 121584 126498 123832.45 121130 130099 - gene protein_coding_gene FALSE TRUE AT1G01320.1 tetratricopeptide repeat (TPR)-containing protein similar to binding [Arabidopsis thaliana] (TAIR:AT4G28080.1); similar to binding [Arabidopsis thaliana] (TAIR:AT1G15290.1); similar to putative tetratricopeptide repeat(TPR)-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAC84544.1); similar to TPR repeat [Medicago truncatula] (GB:ABE77904.1); similar to OSJNBa0070O11.2 [Oryza sativa (japonica cultivar-group)] (GB:CAE03171.2); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990) -0.00243696794748827 -0.032915936877887 0.97451046039109 1 0.77199701212256 15.8383121559965 -0.00243696794748827 0.0435463531609294
AT3G53960_at 8.3011844264167 8.49275538084405 8.10193617415328 8.27380455422762 8.8472145864352 8.5978178574544 8.10551703900033 8.75576733093071 7.91945263284017 8.1741420869643 7.52056066078974 7.33262974135055 7.87250712363947 7.86668161420798 7.2628984504619 8.2820121574113 8.16697801375493 8.10639980581198 7.45644946366244 0.17970203539407 0.189622609363854 0.185095031617299 0.18364491072361 0.183969945546764 0.180901608875982 0.174838393967573 0.187725853354182 0.190200202411909 0.178569794863920 0.179532508508366 0.184811648522178 0.179529340771548 0.174590228746141 0.177247159266731 0.174065188506909 0.175359592979485 0.178469795196319 0.177132485563361 3 3 - 19989308 19989766 19989500.7 19989100 19991937 - gene protein_coding_gene FALSE TRUE AT3G53960.1 proton-dependent oligopeptide transport (POT) family protein similar to proton-dependent oligopeptide transport (POT) family protein [Arabidopsis thaliana] (TAIR:AT2G37900.1); similar to TGF-beta receptor, type I/II extracellular re (GB:ABE84933.1); similar to Os03g0823500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001051743.1); contains InterPro domain TGF-beta receptor, type I/II extracellular region; (InterPro:IPR000109) -0.00364701656207345 -0.0326978526838848 0.974679273507458 1 0.771989503454548 16.2601737555582 -0.00364701656207345 0.128487970863700
AT2G15860_at 6.27268760700863 6.5508935837151 5.79215510890289 5.80659756864666 5.97646494258163 5.77482948627043 5.79727161916056 5.75286896298534 5.27357156254031 5.255867807756 5.64705766211324 5.78906265112065 5.57024096686296 5.42809038748894 5.91954291063004 5.73081806045343 5.39954632660561 5.64905955129885 5.6433515161887 0.232172223147408 0.224840985536588 0.230192662213894 0.227825065710804 0.225856747490691 0.238557197649611 0.234298594757338 0.225843932328884 0.239360494139682 0.235719944242083 0.228827035947624 0.224840985536588 0.236570490617251 0.237654019962233 0.228132236479375 0.229798810550474 0.237834859872497 0.228453589909193 0.233311266995237 2 0|2 /|- 6912809 6913905 6913238.9 6912470 6916511 - gene protein_coding_gene FALSE TRUE AT2G15860.1 similar to unknown protein [Oryza sativa (japonica cultivar-group)] (GB:AAP03423.1) -0.00258582377014283 -0.0325961865414009 0.974757970998248 1 0.771986020129142 11.4817749149423 -0.00258582377014283 0.0600067148415484
AT3G13920_at 11.0700575769155 11.2987129997704 10.9861470144620 11.0924795845982 11.0853164226995 11.0620740438568 11.0185611815979 11.3288420087073 10.8906641687224 10.6325773350925 10.9570239914906 11.0099270884439 10.9758435265931 10.7882315194128 11.1588910844126 10.7344815695097 10.4570007518163 10.6816050107592 10.6291719493459 0.0615422042665664 0.0615975077797639 0.0603718357030322 0.0607666656388129 0.061708287194318 0.0616923131511714 0.06080067585702 0.0636833573637823 0.0678695285844472 0.0619704396015519 0.061201347865628 0.0603301053951982 0.0605838474565545 0.0625708561262592 0.0603301053951982 0.0603301053951982 0.0677687258149524 0.0652679272481565 0.0624489321294468 3 3 - 4592665 4593214 4592945.727 4592263 4594969 - gene protein_coding_gene FALSE TRUE AT3G13920.1|AT3G13920.2|AT3G13920.3 EIF4A1 (eukaryotic translation initiation factor 4A-1); ATP-dependent helicase|EIF4A1 (eukaryotic translation initiation factor 4A-1) eukaryotic translation initiation factor 4A-1 Identical to Eukaryotic initiation factor 4A-1 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-1) (eIF-4A-1) (DEAD-box ATP-dependent RNA helicase 4) (TIF4A-1) [Arabidopsis Thaliana] (GB:P41376;GB:Q546P0;GB:Q8LBZ6;GB:Q8RXF3;GB:Q94CM1); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G72730.1); similar to EIF4A-2 (eukaryotic translation initiation factor 4A-2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G54270.1); similar to Eukaryotic initiation factor 4A-11 (ATP-dependent RNA helicase eIF4A-11) (eIF-4A-11) (GB:Q40465); similar to Eukaryotic initiation factor 4A-2 (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (GB:P41379); similar to Eukaryotic initiation factor 4A-14 (ATP-dependent RNA helicase eIF4A-14) (eIF-4A-14) (GB:Q40467); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629)|Identical to Eukaryotic initiation factor 4A-1 (EC 3.6.1.-) (ATP-dependent RNA helicase eIF4A-1) (eIF-4A-1) (DEAD-box ATP-dependent RNA helicase 4) (TIF4A-1) [Arabidopsis Thaliana] (GB:P41376;GB:Q546P0;GB:Q8LBZ6;GB:Q8RXF3;GB:Q94CM1); similar to eukaryotic translation initiation factor 4A, putative / eIF-4A, putative [Arabidopsis thaliana] (TAIR:AT1G72730.1); similar to EIF4A-2 (eukaryotic translation initiation factor 4A-2), ATP-dependent helicase [Arabidopsis thaliana] (TAIR:AT1G54270.1); similar to Eukaryotic initiation factor 4A-2 (ATP-dependent RNA helicase eIF4A-2) (eIF-4A-2) (GB:P41379); similar to Eukaryotic initiation factor 4A-14 (ATP-dependent RNA helicase eIF4A-14) (eIF-4A-14) (GB:Q40467); similar to Eukaryotic initiation factor 4A-10 (ATP-dependent RNA helicase eIF4A-10) (eIF-4A-10) (GB:P41382); contains InterPro domain DEAD/DEAH box helicase; (InterPro:IPR001410); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain ATP-dependent helicase, DEAD-box; (InterPro:IPR000629) 0.00268262070376246 0.0323748488776768 0.974929304549454 1 0.771978474076117 21.8991972135051 0.00268262070376246 0.0693092716742418
AT3G05280_at 6.70894550592072 7.32296141772463 6.57260303301936 6.75859806189565 6.83439898405171 6.59982960715567 6.91569741696138 6.75876845863819 5.52309371502259 5.9134941733664 6.17799020355982 6.18821411636753 5.72332193780678 6.25473310260682 5.93442273901597 5.85853599537067 6.05956465836686 5.93730006366781 5.88723808646148 0.239908348149815 0.237423224942790 0.246221615874093 0.236563464227817 0.233494367125228 0.240677186927926 0.230474181511792 0.234145537296742 0.242621537363028 0.233599175722602 0.227424406076717 0.224770703597487 0.233123436844840 0.224770703597487 0.229626716283726 0.226622446288019 0.239414836067722 0.248446121145755 0.236918598748393 3 3 - 1504025 1504729 1504385.636 1503764 1505660 - gene protein_coding_gene FALSE TRUE AT3G05280.1 integral membrane Yip1 family protein similar to integral membrane Yip1 family protein [Arabidopsis thaliana] (TAIR:AT5G27490.1); similar to hypothetical protein DDBDRAFT_0204543 [Dictyostelium discoideum AX4] (GB:XP_640517.1); similar to Os01g0610500 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043545.1); similar to Os05g0455800 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055726.1); contains InterPro domain Yip1 domain; (InterPro:IPR006977) 0.00345795776557845 0.032127526027513 0.975120754396271 1 0.771970102918412 12.7046598158603 0.00345795776557845 0.121293812793136
AT1G49760_at 6.78338904869963 7.40105512943811 6.17855397163516 6.57563741184665 6.81829507166707 6.73084736988265 6.86767561428752 7.44159503359876 6.16123687767442 6.6815399226083 7.01314459529718 7.58823221461537 7.19628302471271 6.92098841099547 7.4289085167879 6.5900094266675 6.90533584991993 6.692208570971 6.66527565442177 0.185761152672146 0.188942926407617 0.185546083624693 0.189318381621163 0.192125951545803 0.187308983476293 0.18291701041566 0.184144129591815 0.199623230886487 0.186434351249956 0.186266370931354 0.190775962083326 0.187144140643458 0.194611271354372 0.182829128533038 0.181728390850042 0.190362905793377 0.192970144678372 0.179832893350873 1 1 + 18422657 18423358 18423024.455 18420148 18423715 + gene protein_coding_gene FALSE TRUE AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor polyadenylate-binding protein, putative / PABP, putative, similar to poly(A)-binding protein GB:AAF66825 GI:7673359 from (Nicotiana tabacum). Highly and ubiquitously expressed. Member of the class II PABP family. similar to PAB4 (POLY(A) BINDING PROTEIN 4), RNA binding / translation initiation factor [Arabidopsis thaliana] (TAIR:AT2G23350.1); similar to PAB2 (POLY(A)-BINDING PROTEIN 2), RNA binding [Arabidopsis thaliana] (TAIR:AT4G34110.1); similar to RNA-binding re (GB:ABE82276.1); similar to poly(A)-binding protein [Nicotiana tabacum] (GB:AAF66823.1); similar to poly(A)-binding protein [Cucumis sativus] (GB:AAF63202.1); contains InterPro domain Polyadenylate-binding protein/Hyperplastic disc protein; (InterPro:IPR002004); contains InterPro domain Paraneoplastic encephalomyelitis antigen; (InterPro:IPR002343); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504); contains InterPro domain Polyadenylate binding protein, human types 1, 2, 3, 4; (InterPro:IPR006515) -0.00419528778519895 -0.0321056055571425 0.975137722869067 1 0.771969364070556 13.6219175702890 -0.00419528778519895 0.161990373389725
AT3G45050_at 8.99132607632566 8.85456600004688 8.75289650465995 8.48679257979588 8.56581833889967 8.64879025612244 8.86571997729392 8.40917463276868 7.7415717180701 8.0630763898763 7.82540876936265 8.26012135919116 7.63428476941608 7.80056366958816 8.52074340874005 8.34044660263483 8.12816823702277 7.98303034817528 7.89795815675038 0.170608824368588 0.171191916563001 0.174197438163258 0.176206302046869 0.180854977608103 0.172209853266352 0.181758198234218 0.179629126531278 0.185165145814608 0.188947294244330 0.195301676934453 0.171238182649201 0.177997865927259 0.176912673527058 0.17550887305293 0.17635560258378 0.190801859417061 0.177758706043491 0.179603670473724 3 3|0 +|/ 16487565 16488033 16487719.875 16486951 16488509 + gene protein_coding_gene FALSE TRUE AT3G45050.1|AT3G45050.2|AT3G45050.3|AT3G45050.4 similar to Os06g0731300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058663.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938)|similar to Os06g0731300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058663.1); contains domain Cysteine-rich domain of the chaperone protein DnaJ. (SSF57938); contains domain no description (G3D.2.10.230.10) -0.00294755556092441 -0.0311987499851931 0.975839724613799 1 0.771939239602632 16.6781178709468 -0.00294755556092441 0.095546331902819
AT1G34370_at 9.13969991132518 9.18387915729462 9.25466651235956 9.2006071453777 9.66689524774696 9.5744699802616 9.02751376693478 9.08457673346683 9.16043222272235 9.3399037959742 9.03707126230674 8.99688618439442 8.9918677312912 9.07273743716135 8.5166845864541 9.20223050566626 8.86547135636569 9.1224894541994 9.38476694151665 0.0878720797735127 0.0874260603386599 0.0888336533988404 0.0867083020789223 0.0863309517126354 0.0844087429183533 0.0857580118458796 0.0906897336224377 0.0904059463121995 0.085231970367964 0.0909492872922404 0.0905590680397697 0.0849636037435071 0.0854262690795207 0.0909764110386362 0.089198960004601 0.097290251457446 0.0909654111961908 0.0870162810933245 1 1 + 12551941 12552430 12552200.182 12550424 12552677 + gene protein_coding_gene FALSE TRUE AT1G34370.1|AT1G34370.2|AT1G34370.3 zinc finger (C2H2 type) family protein|nucleic acid binding / zinc ion binding similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G22890.1); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAO41119.1); similar to Os01g0871200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044935.1); similar to Os12g0170400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066271.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087)|similar to zinc finger (C2H2 type) family protein [Arabidopsis thaliana] (TAIR:AT5G22890.1); similar to putative zinc finger protein [Oryza sativa (japonica cultivar-group)] (GB:AAO41119.1); similar to Os01g0871200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001044935.1); contains InterPro domain Zinc finger, C2H2-type; (InterPro:IPR007087) -0.00205608808003377 -0.0296275413039887 0.97705605788731 1 0.771889088893936 18.4018956242464 -0.00205608808003377 0.0223453936603480
AT3G51810_at 4.92795866164258 4.84844219895902 5.03623569130218 4.90627733120753 4.48716582559583 4.59490147547899 4.65322750677786 4.54401663817803 5.17115553909103 5.02135883580293 5.28197198832272 4.89115197470885 4.93492791791229 5.16121896549207 4.85479609624156 5.01535170082671 5.41237383876312 5.07512628370732 5.06807101130497 0.163674045986391 0.163672100923883 0.170236961060658 0.169982473596183 0.175935572400308 0.166979724771563 0.181601523600699 0.166916338975538 0.166537486944353 0.174240487630265 0.168299890534200 0.174349444105973 0.168769486802160 0.163159851722250 0.173669692595552 0.162036855145704 0.16941120272459 0.168669128454274 0.169642343272353 3 3 + 19225795 19226408 19226134.818 19225725 19226808 + gene protein_coding_gene FALSE TRUE AT3G51810.1 ATEM1 (Early methionine labelled) Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip. Identical to Em-like protein GEA1 (EM1) (EM1) [Arabidopsis Thaliana] (GB:Q07187); similar to ATEM6 (ARABIDOPSIS EARLY METHIONINE-LABELLED 6) [Arabidopsis thaliana] (TAIR:AT2G40170.1); similar to late embryogenesis-abundant protein 1b [Brassica napus] (GB:ABB52063.1); contains InterPro domain Small hydrophilic plant seed protein; (InterPro:IPR000389) 0.00211843992697380 0.0292512567462385 0.97734736381427 1 0.771877462890931 9.83239148671599 0.00211843992697380 0.0374158539826069
AT2G46560_at 8.74339133614118 8.71325500989721 8.66140917269271 8.76861760580451 8.96045451363427 8.47937051743367 8.88163960491426 8.60061334311201 8.16369700038384 8.55879233143944 8.24091504245799 8.68718817762536 8.78916644903664 8.4128501974564 8.21952198537005 8.71493608885293 8.9635910294866 8.44760839847042 8.88791996662728 0.141130410984210 0.135789539912251 0.142129492378193 0.135789539912251 0.135789539912251 0.143350671618946 0.140968567554079 0.142524871271294 0.154542131678818 0.144221504613291 0.152751748389140 0.136020026920448 0.136410927580174 0.140835740354183 0.153083326729427 0.136053469909739 0.139513739954660 0.150139721698357 0.142991890848015 2 2 - 19122920 19123517 19123229.667 19122443 19132928 - gene protein_coding_gene FALSE TRUE AT2G46560.1 transducin family protein / WD-40 repeat family protein similar to Os01g0551900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001043309.1); similar to transducin-like protein [Oryza sativa (japonica cultivar-group)] (GB:BAD87976.1); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.00270360024307692 0.0282140092954834 0.978150381799205 1 0.771846184446817 17.2742315232428 0.00270360024307692 0.0983248138266785
AT1G77540_at 6.19122951546438 6.5932390992278 6.22954960369605 5.90042106233872 6.26886345568052 6.30132501589243 5.30744834580641 6.53783915413296 5.96444901685338 5.7741879624115 5.87208001328563 6.02223286015286 6.07305553943028 5.75235928977146 5.884184298942 5.62392664427533 5.42465068408166 5.22143586418516 5.4881295650521 0.244174369388058 0.234238133651284 0.238452618330081 0.246122037011733 0.25307724723019 0.238562605775622 0.242126958315912 0.240232790007813 0.263312540904362 0.229414261381351 0.251186317370776 0.229414261381351 0.236658113283945 0.237072506180503 0.246781882525569 0.229414261381351 0.239419445932977 0.242107936702756 0.232562502310846 1 1|0 -|/ 29142657 29143031 29142880.7 29142520 29143106 - gene protein_coding_gene FALSE TRUE AT1G77540.1 Identical to Uncharacterized protein At1g77540 [Arabidopsis Thaliana] (GB:Q9CAQ2;GB:Q8LEN2); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G21770.1); similar to OSJNBa0084A10.8 [Oryza sativa (japonica cultivar-group)] (GB:CAE03033.1); similar to Acetyltransferase [Leptospira borgpetersenii serovar Hardjo-bovis L550] (GB:YP_796733.1); similar to Os04g0431300 [Oryza sativa (japonica cultivar-group)] (GB:NP_001052824.1) 0.00479294511863004 0.0276563382343194 0.978582131455207 1 0.771829834388078 11.9044874885488 0.00479294511863004 0.231198219750201
AT4G33670_at 9.70981293364072 9.77015656261364 9.3290969410261 9.48377620566013 10.0523562476355 9.64231704008405 9.46356450188023 9.34340859773158 9.63798577907355 9.73384132408327 9.65703127435903 9.48509029263825 9.5813399645619 9.67188108606246 9.60822941743494 9.50268730958302 9.52995153826052 9.71349342374071 9.56037444915977 0.0921034221731543 0.09021109064935 0.0921799887701416 0.0973380971194707 0.09021109064935 0.0927795029221719 0.0931866167576436 0.092097677546787 0.101195136854163 0.0915965949455001 0.0929736175748361 0.0909572543049676 0.0909552438531702 0.09021109064935 0.0934823094289239 0.09021109064935 0.0985676652379949 0.0944284890053802 0.093016553183414 4 4|0 -|/ 16169712 16170891 16170490.3 16169528 16171564 - gene protein_coding_gene FALSE TRUE AT4G33670.1 L-galactose dehydrogenase (L-GalDH) Encodes a L-galactose dehydrogenase, involved in ascorbate biosynthesis similar to AGD2 (ARF-GAP DOMAIN 2), aldo-keto reductase [Arabidopsis thaliana] (TAIR:AT1G60680.1); similar to galactose dehydrogenase [Actinidia deliciosa] (GB:AAO18639.1); contains InterPro domain Aldo/keto reductase; (InterPro:IPR001395) 0.00239840692974513 0.0275564677294602 0.978659452120114 1 0.771826940792001 19.2182012400018 0.00239840692974513 0.0793294020473774
AT1G02840_at 9.3953815284321 9.36067125166814 9.35993650219818 9.19777785521815 9.97556372804881 9.64560903249184 9.3056860763917 9.17431217948594 9.26664932014836 9.1498410337282 9.07885180385538 8.99958816643683 9.05454223058013 9.08112714062376 8.9718531968352 9.1779242689215 9.0529746737962 9.03779712909104 9.44780863995564 0.0817435223407272 0.0799037885599667 0.0802841742846695 0.081154539493795 0.0824878113277261 0.081109321239247 0.0821754751289362 0.0834872541610219 0.086085741856008 0.0797501947785979 0.083112851368387 0.0796436164545007 0.0832553520753667 0.0829692894812825 0.0823882567066237 0.0806346086896793 0.0866015943033395 0.0851571246912311 0.0827087302298453 1 1|0 +|/ 627579 629430 628364.1 626741 629819 + gene protein_coding_gene FALSE TRUE AT1G02840.1|AT1G02840.2|AT1G02840.3 SR1 (splicing factor 2); RNA binding SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF. Identical to Pre-mRNA-splicing factor SF2 (SR1 protein) (SF2) [Arabidopsis Thaliana] (GB:O22315;GB:O22314;GB:Q39201); similar to pre-mRNA splicing factor, putative / SR1 protein, putative [Arabidopsis thaliana] (TAIR:AT4G02430.2); similar to ribonucleoprotein (GB:AAA32856.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.00222084107577558 0.0269925283604838 0.979096063617987 1 0.771810797912128 18.5993332646810 0.00222084107577558 0.0678297974892639
AT1G01990_at 6.15406827748762 6.66012633828705 6.46889407724382 6.54479135397515 7.7349805665944 6.81951375787852 7.4368933642883 7.19028041384904 6.07057662165563 6.239624107587 6.37737862970735 5.74457244592344 6.38638118337022 6.00739969456272 5.91078352675674 6.48447121390537 6.60731768249529 6.28512757366802 6.48459921216056 0.229044509324061 0.209749445464929 0.242123605236748 0.225488444219158 0.219256036534958 0.238935412918026 0.216927737871611 0.213222545188882 0.221448574922208 0.21248706067302 0.210391513770615 0.211084261341639 0.219120764231243 0.218615027101533 0.216704396298828 0.219233092403991 0.222275271737172 0.210682201941012 0.219197366695230 1 1 - 343483 343898 343689.091 343166 344341 - gene protein_coding_gene FALSE TRUE AT1G01990.1 similar to chloroplast lumen common family protein [Arabidopsis thaliana] (TAIR:AT5G02590.1); similar to conserved hypothetical protein [Medicago truncatula] (GB:ABE79208.1) -0.00390073977872296 -0.0268327384278974 0.979219777073647 1 0.771806284567212 13.1213746725003 -0.00390073977872296 0.186446028698175
AT3G51920_at 11.1636254419726 11.4645959698458 11.5387701030583 11.6871981041430 11.6332426069105 11.2287478110799 11.8972915299789 11.9634424960698 11.8736675859237 11.7252191733207 11.8487763930000 11.9776907749740 11.8718276002296 12.0398376999030 11.3197954122772 11.8605486356398 11.7833899221967 12.0412344252682 11.6144800127739 0.111874365612454 0.0992540357123065 0.108786816808913 0.0992540357123065 0.102387524405942 0.103197917994631 0.104152010785732 0.0992540357123065 0.115406325623085 0.0992540357123065 0.112091426705732 0.102641164875369 0.102057407642253 0.0993425628199835 0.108346096725099 0.102459129033739 0.109123235287315 0.101697238107148 0.102491457507325 3 3|0 -|/ 19279181 19280268 19279702.286 19279021 19280457 - gene protein_coding_gene FALSE TRUE AT3G51920.1 CAM9 (CALMODULIN 9); calcium ion binding encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1) but only when selected against the plasmid harboring wild-type yeast sequences. Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. Identical to Calmodulin-like protein 9 (AtCaM-9) (CAM9) [Arabidopsis Thaliana] (GB:Q9S744); similar to CAM4 (CALMODULIN 4), calcium ion binding [Arabidopsis thaliana] (TAIR:AT1G66410.1); similar to CAM1 (CALMODULIN 1), calcium ion binding [Arabidopsis thaliana] (TAIR:AT5G37780.1); similar to calmodulin [Plasmodium berghei strain ANKA] (GB:XP_675328.1); contains InterPro domain EF-Hand type; (InterPro:IPR011992); contains InterPro domain Calcium-binding EF-hand; (InterPro:IPR002048) 0.00242474038058083 0.0261766037956967 0.979727779484044 1 0.771788032608107 23.3624525238534 0.00242474038058083 0.0916709807277748
AT1G47240_at 5.40405122797689 5.77961400378105 5.64017113907247 5.6328904275123 5.46334740347411 5.61565996793596 5.59016768474785 5.96131873464772 5.21089519427841 5.40281300845742 5.53844271614598 5.81089271176748 4.99041189655721 5.46237877593604 5.43807512973084 5.60227716721231 5.36684034317583 5.41324292390962 5.47218769753571 0.219765720612053 0.212192809477117 0.221550608934947 0.225117756741458 0.215148481374096 0.218446015158549 0.218061562099765 0.215661081888358 0.237553578988667 0.220815131148603 0.210672300260304 0.216106067196368 0.221503691628892 0.217233790054405 0.214982915764598 0.219232686692604 0.229371006502316 0.214904159844212 0.214162162877994 1 1 - 17311484 17312150 17311752.273 17311243 17313837 - gene protein_coding_gene FALSE TRUE AT1G47240.1 NRAMP2 (NRAMP metal ion transporter 2); metal ion transporter Member of the NRAMP2 gene family of metal ion transporters. Identical to Metal transporter Nramp2 (AtNramp2) (NRAMP2) [Arabidopsis Thaliana] (GB:Q9C6B2;GB:Q9XH62); similar to NRAMP3 (NRAMP metal ion transporter 3), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT2G23150.1); similar to NRAMP5 (NRAMP metal ion transporter 5), metal ion transporter [Arabidopsis thaliana] (TAIR:AT4G18790.1); similar to ATNRAMP4 (Arabidopsis natural resistance-associated macrophage (NRAMP) protein 4), manganese ion transporter/ metal ion transporter [Arabidopsis thaliana] (TAIR:AT5G67330.1); similar to ferrous ion membrane transport protein DMT1 [Glycine max] (GB:AAO39834.1); similar to metal transporter [Lycopersicon esculentum] (GB:AAP21819.1); similar to Nramp metal transporter-like protein [Thlaspi caerulescens] (GB:AAW47269.1); contains InterPro domain Natural resistance-associated macrophage protein; (InterPro:IPR001046) -0.00245788516288248 -0.0260737500306456 0.979807413362354 1 0.7717852124423 11.043295327716 -0.00245788516288248 0.0951096571665041
AFFX-r2-Bs-phe-5_at 3.61515463407252 3.62343302266843 4.60909017098441 3.77161270493015 6.22426489126654 3.61624875741241 6.3035079310011 4.39949790670982 5.40723723159924 5.94237325982114 6.07229781566103 6.68088662944326 5.40503920196494 6.23060534128191 5.15774401299758 6.27664835442012 5.12941565532927 4.83450929512112 6.09310340061652 0.222115016663057 0.227505307862458 0.235536493581148 0.227502166654315 0.224227977651206 0.221555555675352 0.222324395396036 0.225166840119839 0.224317483408667 0.218819443149520 0.22155862205516 0.220257513899117 0.222564793052366 0.228606692620227 0.218819443149520 0.222083165716236 0.220162852817369 0.218819443149520 0.233561649466093 NA NA NA NA NA FALSE FALSE -0.0104694590997410 -0.0259083050583710 0.979935508588654 1 0.771780699366628 10.2891668785255 -0.0104694590997410 0.577298514401711
AT4G03020_at 9.86196569573585 9.99746975851395 9.96028806983677 9.9658849398826 10.0825462859741 9.92211624624646 10.0664307958349 9.98258961375946 9.61962639899842 9.704845210402 9.59358672282291 9.56814256794464 9.41918563314361 9.50946455408001 9.29094459405514 9.49953204528038 9.55371086026396 9.42314759242484 9.12775762782195 0.0976002477819419 0.0979359369179882 0.103163964516189 0.100805651011027 0.103004520318354 0.0978831528779613 0.0974439396556507 0.103787896466836 0.103755243415392 0.0983908619986642 0.0993593472642822 0.0964281172361686 0.102064508834913 0.102915911138762 0.0988686296566042 0.0954969681992203 0.0989364980427476 0.0990598513200501 0.101276827461661 4 4|0 -|/ 1331807 1332636 1332170.333 1331399 1335297 - gene protein_coding_gene FALSE TRUE AT4G03020.1 transducin family protein / WD-40 repeat family protein similar to transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT2G43770.1); similar to LEC14B homolog (GB:O24467); similar to LEC14B protein (GB:Q40153); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) 0.00186641418421063 0.0256180289994859 0.980160255355987 1 0.771772850504396 19.4630567925527 0.00186641418421063 0.0391424315730363
AT4G12060_at 9.4279097623939 9.58316535901572 9.2618426433828 9.23491272552748 9.63038808595499 9.26444237526164 9.71219117424823 9.47295033848745 9.72806300157287 9.55353765636767 9.8541780647538 9.95537179527851 9.54044167353507 9.8122927608861 10.2574488433625 9.86202519732372 9.34917263786399 9.77924781756205 9.5053462673495 0.103729816457202 0.108663714214581 0.114255932406697 0.103658427890195 0.112978962120434 0.117554882094494 0.103424892804868 0.110931612057933 0.113282504593438 0.111721299295290 0.108118827720961 0.104333871927375 0.106445418329916 0.102456129058112 0.111052586290754 0.104500254181803 0.118669960225479 0.110558743883488 0.107223986661114 4 4|0 -|/ 7228277 7229694 7228818.4 7228001 7229935 - gene protein_coding_gene FALSE TRUE AT4G12060.1 Clp amino terminal domain-containing protein similar to Clp amino terminal domain-containing protein [Arabidopsis thaliana] (TAIR:AT4G25370.1); similar to ATPase AAA-2 [Trichodesmium erythraeum IMS101] (GB:YP_722954.1); similar to negative regulator of genetic competence clpC/mecB [Carboxydothermus hydrogenoformans Z-2901] (GB:YP_361153.1); similar to Os03g0247000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001049547.1); contains InterPro domain Clp, N terminal; (InterPro:IPR004176) 0.00223283635972416 0.0255141369832975 0.980240694394296 1 0.771770062822822 19.1469359699927 0.00223283635972416 0.0804251812703145
AT1G64355_at 7.02737661006118 7.2438825899608 6.35124546457601 6.54109293921426 7.76835402859025 7.4856374078961 7.67352820428369 7.44543169087586 7.28913926285114 7.12043283053255 7.36604408338441 7.83553694081993 7.58879287609904 7.65769771287572 7.58068828236346 7.6915658003151 6.54592210778425 7.50686641961054 7.08576968348758 0.207019182960061 0.198953418047695 0.216065313287325 0.224280466542731 0.198458281347527 0.229689502031938 0.204299395853133 0.219734837834260 0.21353342053458 0.198458281347527 0.199958453490869 0.205415509086228 0.204138748681953 0.198458281347527 0.202566928375327 0.199237756575024 0.227669583428309 0.220774307404499 0.2090840940322 1 1 + 23889824 23890501 23890062 23889765 23890875 + gene protein_coding_gene FALSE TRUE AT1G64355.1|AT1G64355.2 similar to hypothetical protein asl4507 [Nostoc sp. PCC 7120] (GB:NP_488547.1); similar to Os05g0571400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056374.1)|similar to hypothetical protein Tery_1757 [Trichodesmium erythraeum IMS101] (GB:YP_721490.1); similar to Os05g0571400 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056374.1) -0.00222348072171186 -0.0254334931633906 0.980303133536876 1 0.771767906756395 14.5104452186974 -0.00222348072171186 0.0802185574931117
AT1G79430_at 6.30069206012346 6.75766989202587 6.77717764620898 6.86664708182018 6.33912210596471 6.98200692885272 7.03086539386018 7.73088501972487 7.04693573547005 7.48129415974665 7.31288471044131 7.31403686277517 6.95363529210032 7.2227293420413 7.47509812875847 7.359873111495 7.54707905129306 7.24037204646153 6.71828326831196 0.192911450311705 0.169105891161828 0.172389823295163 0.172302813679106 0.173227197153441 0.172284967020249 0.175216099516048 0.178691672854893 0.179593175183949 0.171518161934475 0.170758551271733 0.171607137506264 0.174253693907964 0.173972340236729 0.180681856848623 0.173118561563585 0.195220519617710 0.180625578685805 0.169557621965555 1 1 - 29882450 29882979 29882734.273 29882121 29884097 - gene protein_coding_gene FALSE TRUE AT1G79430.1|AT1G79430.2 APL (ALTERED PHLOEM DEVELOPMENT); transcription factor Encodes gene product that is required for several aspects of phloem development in the root: (1) the specific divisions organizing the phloem pole, (2) sieve element differentiation and (3) the expression of a companion-specific gene. Mutant has a defect in the organization of phloem poles in the root. apl seedlings have a short, determinate root with only occasional lateral branches. similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G12730.1); similar to myb family transcription factor-related protein [Populus tomentosa] (GB:AAV85474.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057)|similar to myb family transcription factor [Arabidopsis thaliana] (TAIR:AT3G12730.1); similar to myb family transcription factor-related protein [Populus tomentosa] (GB:AAV85474.1); contains InterPro domain Homeodomain-like; (InterPro:IPR009057); contains InterPro domain Myb-like DNA-binding region, SHAQKYF class; (InterPro:IPR006447); contains InterPro domain Myb, DNA-binding; (InterPro:IPR001005) 0.00362643146963859 0.0252946644143541 0.980410623176107 1 0.771764211063593 14.0408255774128 0.00362643146963859 0.183157077287449
AT1G26650_at 6.32860308292133 6.86186231972925 5.5044324610972 5.75130162499944 6.87482563705052 5.63162538162515 7.41240122628856 7.46207262623438 5.40294651153216 6.55629794627071 7.76733114914331 8.19696535257783 6.85738803158673 7.20267679503127 7.61266295471964 7.30751072178324 6.79022275836788 6.66569123955663 6.68712223447956 0.216756616377551 0.214984115674472 0.226480199553572 0.219960750598920 0.218005514259246 0.232535148022938 0.217680758908414 0.225219398313342 0.246833576644567 0.226313940391492 0.214984115674472 0.215622682266528 0.219091330010606 0.229788538881373 0.224903551684203 0.216606595866388 0.224700381891537 0.224576459260266 0.228010625723935 1 1 + 9210916 9211303 9211093.909 9210076 9211547 + gene protein_coding_gene FALSE TRUE AT1G26650.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G69430.1); similar to hypothetical protein [Oryza sativa (japonica cultivar-group)] (GB:BAC55692.1) 0.00445601182568378 0.0250744840076053 0.980581101068945 1 0.771758391222313 13.2361463897132 0.00445601182568378 0.238119942471849
AT1G66580_at 11.1662261974019 11.1920190156098 11.4243967215755 11.3410806706378 11.0690640089510 11.0216153373632 10.8427066655709 10.8961883125577 10.8662210482379 10.5360538187426 10.5284095848531 10.6567350660363 10.4849746606534 10.2632339161797 10.8078408342653 10.4696868577772 10.2890071064888 10.2644325450790 10.5682816270125 0.113905002929201 0.107489842193284 0.110168477928807 0.115029857813829 0.107854690009862 0.108532994975495 0.110535468632405 0.109151197157087 0.116843632704176 0.11057742008182 0.109340342484373 0.110836572034323 0.107489842193284 0.116284693954399 0.108192802661668 0.111536558062639 0.117744299485945 0.113651518454794 0.108645860369147 1 1|0 +|/ 24843337 24844077 24843723.5 24842828 24844275 + gene protein_coding_gene FALSE TRUE AT1G66580.1 60S ribosomal protein L10 (RPL10C) Identical to 60S ribosomal protein L10-3 (RPL10C) [Arabidopsis Thaliana] (GB:Q93W22;GB:Q9C6H7); similar to 60S ribosomal protein L10 (RPL10B) [Arabidopsis thaliana] (TAIR:AT1G26910.1); similar to Ribosomal protein L10E [Medicago truncatula] (GB:ABE79479.1); contains InterPro domain Ribosomal protein L10E; (InterPro:IPR001197) 0.00172102179953115 0.0249458398496498 0.98068070617349 1 0.771755014425639 21.6828582342489 0.00172102179953115 0.0195164669634618
AT1G27200_at 5.33913111605472 5.55386540430877 4.93399527569755 5.18298323591216 5.76647567077292 5.43883566857737 5.78651711987697 5.79256451334723 4.1141859809217 4.04570435486841 4.32483563666583 4.06818372618964 4.90035077969615 4.49483143327579 4.27832179567007 4.55212997288841 4.57831050019071 4.02745652605305 4.17430975608253 0.245724535959551 0.244945603037387 0.244490534271758 0.24786932060127 0.244686628461064 0.247403648534185 0.244623581732116 0.245602049456008 0.251212864876220 0.243777903370138 0.248354442598831 0.241889781802889 0.241889781802889 0.245749027293139 0.248441130671846 0.245068628059985 0.246628036085856 0.241889781802889 0.245784763763666 1 1 - 9449819 9450368 9450137.182 9449536 9451737 - gene protein_coding_gene FALSE TRUE AT1G27200.1 similar to zinc finger (C3HC4-type RING finger) family protein [Arabidopsis thaliana] (TAIR:AT3G27330.1); similar to Os08g0121900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001060883.1); similar to zinc finger (C3HC4-type RING finger) protein family-like [Oryza sativa (japonica cultivar-group)] (GB:BAD10590.1); contains InterPro domain Protein of unknown function DUF23; (InterPro:IPR008166) 0.00210272002378564 0.0240383315831328 0.98138337118987 1 0.771731686501361 9.73152228904492 0.00210272002378564 0.080333600506963
AT4G31200_at 5.77492121631799 5.75742078991452 5.37266241930765 5.85687975180493 5.52995044454425 5.55397604178027 5.14759955498897 5.33117860078062 5.57759127384667 5.11405432887151 4.98201091021339 5.09146314158325 5.6733077088355 5.48620455323837 5.51403162968647 5.45124881154526 5.35708449784211 5.2337741381911 5.56825818152158 0.192630363621214 0.203210171798637 0.197008144694633 0.198856995226483 0.196633888929382 0.203080485887462 0.195647310064292 0.197553826785241 0.196306813081632 0.191246629061132 0.188202924726315 0.195482003185111 0.188485713983416 0.193267841953886 0.192803649156582 0.190501282823637 0.201204213804595 0.19628334924783 0.187953068206599 4 4 - 15162428 15162736 15162610.125 15161642 15164920 - gene protein_coding_gene FALSE TRUE AT4G31200.1|AT4G31200.2|AT4G31200.3 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein similar to leucine-rich repeat family protein / extensin family protein [Arabidopsis thaliana] (TAIR:AT3G19020.1); similar to Pre-mRNA splicing factor [Solanum tuberosum] (GB:BAE46412.1); similar to Os06g0682700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001058382.1); contains InterPro domain SWAP/Surp; (InterPro:IPR000061); contains InterPro domain Regulation of nuclear pre-mRNA protein; (InterPro:IPR006569) 0.00212993483538026 0.0232180421258733 0.982018519250106 1 0.771711344225113 10.9248779034158 0.00212993483538026 0.0897637035731565
AT1G10310_at 7.48720276430207 7.40481789059038 7.55558199137952 7.38456938355641 7.27181331896429 7.46195850525711 7.51257729905845 6.93282756340668 7.09567468095159 7.22621640382818 7.09367284530603 7.011464850157 6.85653860942834 7.03734867728115 7.2382489201475 7.21258334668267 7.06688722832974 6.95797884481288 7.12189731464763 0.163046216777614 0.159969039663910 0.166989237399409 0.164125101381753 0.166766023789537 0.171460415743294 0.170334636250700 0.163812292960693 0.163437437756622 0.169991630447315 0.159770622640126 0.161224340364633 0.165803783851440 0.170591273532122 0.163575285937544 0.160915928354929 0.161936829306679 0.161377571933736 0.164891151069916 1 1|0 -|/ 3381738 3383690 3382395.429 3381605 3383916 - gene protein_coding_gene FALSE TRUE AT1G10310.1 short-chain dehydrogenase/reductase (SDR) family protein similar to short-chain dehydrogenase/reductase (SDR) family protein [Arabidopsis thaliana] (TAIR:AT3G55290.2); similar to Os02g0557700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001047141.1); similar to Short-chain dehydrogenase/reductase SDR [Medicago truncatula] (GB:ABE85956.1); contains InterPro domain Short-chain dehydrogenase/reductase SDR; (InterPro:IPR002198); contains InterPro domain Glucose/ribitol dehydrogenase; (InterPro:IPR002347) -0.00223231537884772 -0.0218880894749703 0.983048326791342 1 0.77167986337156 14.4800535304363 -0.00223231537884772 0.110578751679848
AT3G20330_at 6.20665236733304 6.74413888428795 6.18437306376277 6.62050376192665 5.76355159311429 6.03400074665192 7.04289675604755 6.69406376491432 5.03233334860472 5.59697287437467 5.58920491388096 6.02954157245563 5.73998943569212 5.76215679985356 6.03506452838081 5.78597208328144 5.80003079751162 5.90421313599035 5.28395154476501 0.212255000436637 0.205661255246364 0.219798986680177 0.209952793252913 0.212177672054822 0.219860850537647 0.207797327628874 0.221949325585061 0.215552383973445 0.215638923824546 0.210572119739272 0.206259814173033 0.210988122124581 0.207537511413901 0.209618750007942 0.209648561039148 0.222439778872404 0.215753541888268 0.215948921351209 3 3|0 -|/ 7090360 7091208 7090816.9 7090112 7092676 - gene protein_coding_gene FALSE TRUE AT3G20330.1 aspartate carabmoyltransferase, chloroplast / aspartate transcarbamylase / ATCase (PYRB) Identical to Aspartate carbamoyltransferase, chloroplast precursor (EC 2.1.3.2) (Aspartate transcarbamylase) (ATCase) (PYRB) [Arabidopsis Thaliana] (GB:P49077;GB:Q9LTR1); similar to OTC (ORNITHINE CARBAMOYLTRANSFERASE), amino acid binding / carboxyl- and carbamoyltransferase [Arabidopsis thaliana] (TAIR:AT1G75330.1); similar to aspartate carbamoyltransferase [Solanum tuberosum] (GB:CAC85728.1); contains InterPro domain Aspartate/ornithine carbamoyltransferase; (InterPro:IPR006130); contains InterPro domain Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; (InterPro:IPR006131); contains InterPro domain Aspartate carbamoyltransferase; (InterPro:IPR002082); contains InterPro domain Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain; (InterPro:IPR006132) 0.00251087534210259 0.0210782436158290 0.983675422350021 1 0.771661603067865 11.9788680744026 0.00251087534210259 0.142066068427707
AT1G30000_at 7.41631586639538 7.78212693785129 7.1085549297526 7.20769279749421 7.02015234878538 7.2736281358763 6.30512706538271 7.2381748390754 7.01530019830328 6.21211676720527 6.43553640429365 6.81484194098443 6.53473598342447 6.5020892133956 6.56820389842555 6.8354282392655 6.45304105900916 6.63154312700421 6.48227730856848 0.196486058645736 0.193787891445336 0.199550442698309 0.195090629857237 0.197602946772649 0.200275025619019 0.198983099476833 0.194573366195335 0.211890473230562 0.200371027428698 0.197120831680292 0.197537436721536 0.200810237066608 0.198151507230905 0.195237724888739 0.194657817208153 0.203131341068449 0.20107475343791 0.201178481048239 1 1 - 10509530 10510234 10509882.636 10509195 10512452 - gene protein_coding_gene FALSE TRUE AT1G30000.1 glycoside hydrolase family 47 protein similar to mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative [Arabidopsis thaliana] (TAIR:AT3G21160.1); similar to putative alpha-mannosidase [Oryza sativa (japonica cultivar-group)] (GB:AAT01383.1); similar to Os05g0209100 [Oryza sativa (japonica cultivar-group)] (GB:NP_001054909.1); contains InterPro domain Ankyrin; (InterPro:IPR002110); contains InterPro domain Glycoside hydrolase, family 47; (InterPro:IPR001382) -0.00294986616637938 -0.0208797677817275 0.983829111854076 1 0.771657232870453 13.7523844023688 -0.00294986616637938 0.179716595932177
AT1G43190_at 8.11648331785935 8.17967749460233 8.07947138966234 7.83789773549044 8.25370465548958 8.28228026423434 7.84343159484337 7.91820485798376 8.00531394516174 8.05912589412443 7.93963334882102 8.02656335403428 7.9830969692288 7.71862417970243 8.3172084650172 7.91704730416769 7.81589184599838 8.0994561016347 8.15477342073233 0.130620072974675 0.12615415961053 0.120305429935182 0.128852606019662 0.121626423170745 0.124418380994096 0.121806409956183 0.133397707212462 0.130550312845300 0.130578510003163 0.129551061438830 0.120733343508163 0.124900081328929 0.133082225621982 0.125112978551962 0.128797927460045 0.132893848473081 0.130449132529226 0.131365737422862 1 1 - 16277909 16278610 16278263.091 16277550 16281062 - gene protein_coding_gene FALSE TRUE AT1G43190.1|AT1G43190.2|AT1G43190.3 polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative Identical to Polypyrimidine tract-binding protein homolog 3 [Arabidopsis Thaliana] (GB:Q6ICX4); similar to PTB (POLYPYRIMIDINE TRACT-BINDING), RNA binding [Arabidopsis thaliana] (TAIR:AT3G01150.1); similar to RNA-binding re (GB:ABE83173.1); similar to RNA-binding re (GB:ABE86003.1); similar to polypyrimidine track-binding protein homologue [Cicer arietinum] (GB:CAD70621.1); contains InterPro domain HnRNP-L/PTB/hephaestus splicing factor; (InterPro:IPR006536); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.00150415214984978 0.0201742017470875 0.98437547171894 1 0.771642031863103 16.0890245551449 0.00150415214984978 0.0453782659978693
AT3G27530_at 6.6162691477624 6.86125469872885 6.55439123778083 6.90566166896213 7.145624550053 6.9303951199708 6.84177353444016 6.35500039066576 6.92630047320167 6.74661336327587 7.04124012097863 6.94209167557377 5.92082590515999 6.74790335778864 5.95777231078488 6.96938202746975 6.55693505094614 6.41738765979112 6.66847517983547 0.184632140637589 0.177094216933289 0.173052870629228 0.177963810224129 0.180116270071426 0.179525592678883 0.178136752150822 0.181426816018995 0.190233121780269 0.187339166793414 0.176956680756749 0.173052870629228 0.178987163110267 0.177003674279147 0.183516564818896 0.180542767740437 0.182774133152894 0.178036261419608 0.174595109641609 3 3|0 -|/ 10195220 10196004 10195458.444 10194806 10200913 - gene protein_coding_gene FALSE TRUE AT3G27530.1 vesicle tethering family protein similar to ER-Gol (GB:CAL54025.1); similar to Os12g0538900 [Oryza sativa (japonica cultivar-group)] (GB:NP_001066945.1); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain Uso1/p115 like vesicle tethering protein, C-terminal; (InterPro:IPR006955) 0.00208647970817233 0.0196853857204655 0.984753994860038 1 0.771631806962059 13.4511239280451 0.00208647970817233 0.118220610847532
AT2G43530_at 10.1922020132267 10.6836584407929 9.23926388311704 9.06438987027926 10.0937621999692 9.5136436273006 9.75749536570734 9.64858500016685 8.26881391437995 9.62203741512607 9.78781412142457 9.90147017333937 9.2975434877499 9.74654685173888 9.3370568472705 9.52032307095664 9.0833266561549 9.09417896374831 8.75771047088854 0.168457817059212 0.168663333383593 0.171420466592317 0.177347088776863 0.168489167015277 0.168055162589411 0.166626840855016 0.162302872270136 0.208326778371197 0.160645527469014 0.175452223241834 0.160645527469014 0.163856836460530 0.169603034709491 0.167027027708399 0.164413276050294 0.177702434732021 0.161302209505310 0.164683657596627 2 2|0 +|/ 18077196 18077576 18077423.4 18077133 18077795 + gene protein_coding_gene FALSE TRUE AT2G43530.1 trypsin inhibitor, putative Encodes a defensin-like (DEFL) family protein. Identical to Putative trypsin inhibitor At2g43530 precursor [Arabidopsis Thaliana] (GB:O22867); similar to ATTI2 (ARABIDOPSIS THALIANA TRYPSIN INHIBITOR PROTEIN 2), trypsin inhibitor [Arabidopsis thaliana] (TAIR:AT2G43520.1); similar to Trypsin inhibitor 2 precursor (MTI-2) (GB:P26780); contains InterPro domain Scorpion long chain toxin; (InterPro:IPR002061); contains InterPro domain Knottin; (InterPro:IPR003614) -0.0022708608619455 -0.0195967208200825 0.98482265449821 1 0.771629979164858 18.9510682775763 -0.0022708608619455 0.136319341265282
ATCG00020_at 12.6025681186703 13.8283625106718 13.4838451574906 13.7272130869297 12.9866125210103 13.1529858239605 13.0085344265258 13.9380329663612 13.7626102505228 14.0986770959022 14.3517145981982 14.1979373543961 14.0714913892200 13.4432466562241 13.9882451408915 14.2618731824932 13.6428273645907 13.5416939865293 13.9078412753019 0.129989372234161 0.134777408235141 0.126732060575155 0.126732060575155 0.127800977950057 0.138583273999154 0.126732060575155 0.126732060575155 0.146608679023412 0.127776708372356 0.142254616636350 0.133893672821867 0.137151867977132 0.136662969842479 0.136886606945475 0.132262530195919 0.145314638696341 0.141178328730526 0.126732060575155 C C - 676 924 816.6 383 1444 - gene protein_coding_gene FALSE TRUE ATCG00020.1 Encodes chlorophyll binding protein D1, a part of the photosystem II reaction center core Identical to Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1) (PSII D1 protein) (psbA) [Arabidopsis Thaliana] (GB:P83755;GB:Q33592); similar to QB protein [Nicotiana tabacum] (GB:BAA76900.1); similar to Photosystem Q(B) protein (32 kDa thylakoid membrane protein) (Photosystem II protein D1) (GB:P02956); similar to photosystem II protein D1 [Nicotiana tabacum] (GB:NP_054477.1); contains InterPro domain Photosynthetic reaction centre protein; (InterPro:IPR000484); contains InterPro domain Photosystem II reaction centre protein PsbA/D1; (InterPro:IPR005867) 0.00381273847471464 0.0191670451847497 0.985155385265532 1 0.771621238413785 27.2712301179409 0.00381273847471464 0.271063903608576
AT1G62790_at 6.11968769634928 6.03729563435772 5.51649167996565 5.84315382851081 5.64843443025105 5.57665408445593 5.27586230558879 5.02590694401812 6.12001833941869 5.75119261652975 6.27946639192544 6.05995177280875 4.27485843973494 6.09750962395214 6.40413280021562 4.97931552346808 4.86638544050618 6.01651038269773 5.0991693582196 0.190206027995619 0.188126083291203 0.203276316543534 0.190749722090872 0.190467281799397 0.192703807286827 0.185119922234813 0.189601539376989 0.194867193918971 0.198016287969830 0.199516706850163 0.185119922234813 0.209516638526317 0.197814164870525 0.193925207419187 0.194175022098805 0.203610599645293 0.187793232314690 0.191330026405963 1 1|0 +|/ 23256061 23257113 23256460 23255978 23257408 + gene protein_coding_gene FALSE TRUE AT1G62790.1|AT1G62790.2 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein similar to receptor serine/threonine kinase, putative [Arabidopsis thaliana] (TAIR:AT1G70250.1); similar to Plant lipid transfer protein/Par allergen [Medicago truncatula] (GB:ABE81473.1); contains InterPro domain Plant lipid transfer/seed storage/trypsin-alpha amylase inhibitor; (InterPro:IPR003612) -0.00151589021251231 -0.0179128504883255 0.986126621605581 1 0.771596832939121 11.2699656929220 -0.00151589021251231 0.0736503066988617
AT3G54080_at 5.14799358560665 5.5064183409422 4.47214614519589 5.085206349253 5.70354025801754 5.34811726472303 4.97550382232241 5.82705196357925 4.52193060174969 4.70211945794702 4.89347905381208 4.98132958188302 4.6840671605717 4.79273862956446 5.21750760307251 5.2806345514465 4.3913553147989 4.76949424565616 4.78495573267653 0.226846655430416 0.226645941681406 0.227715840248341 0.227434814889615 0.223420053117833 0.242079734836347 0.223410156217426 0.227998156087063 0.237001514285359 0.225580439509935 0.227071182870652 0.226741190783308 0.224196338038148 0.230922303804837 0.230589924262807 0.230008097304276 0.233261892112309 0.223410156217426 0.226669828513457 3 3 + 20036828 20037257 20037050.182 20036245 20038000 + gene protein_coding_gene FALSE TRUE AT3G54080.1 sugar binding similar to legume lectin family protein [Arabidopsis thaliana] (TAIR:AT5G01090.1); similar to Concanavalin A-like lectin/glucanase [Medicago truncatula] (GB:ABE83853.1); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Concanavalin A-like lectin/glucanase; (InterPro:IPR008985); contains InterPro domain Legume lectin, beta domain; (InterPro:IPR001220) -0.00266612683617085 -0.0172405035317283 0.986647290800277 1 0.771584429391103 10.0312443987342 -0.00266612683617085 0.201500651950956
AT2G39550_at 5.56109302995019 6.23900611316201 5.97122111209231 5.82648159309216 6.28728683672444 5.6504281432707 5.86346824767885 5.12337964430453 5.26900765642602 5.21916232036437 5.29801084291743 5.39879881388759 5.28918349136283 5.20753149495137 5.00984169090773 5.23721419417284 5.50545256048055 5.29245457854761 6.0471246401534 0.252927995453636 0.241463152865493 0.247068194895877 0.245840188175951 0.240299953151307 0.251356727369576 0.246169157489797 0.240299953151307 0.283202268579140 0.2453395355953 0.240299953151307 0.243975445930920 0.244652761323695 0.250033041833786 0.247391844435945 0.240299953151307 0.251016550184996 0.252855792251425 0.246249988076812 2 2|0 +|/ 16510087 16511198 16510862.5 16508701 16511382 + gene protein_coding_gene FALSE TRUE AT2G39550.1 ATGGT-IB (GERANYLGERANYLTRANSFERASE-I BETA SUBUNIT); CAAX-protein geranylgeranyltransferase/ protein heterodimerization encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. similar to geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative [Arabidopsis thaliana] (TAIR:AT5G12210.2); similar to Prenyltransferase and squalene oxidase repeat, putative [Medicago truncatula] (GB:ABE90647.1); contains InterPro domain Prenyltransferase/squalene oxidase; (InterPro:IPR001330); contains InterPro domain Terpenoid cylases/protein prenyltransferase alpha-alpha toroid; (InterPro:IPR008930) 0.00258187430495393 0.0163201029746253 0.987360064971033 1 0.77156821898512 11.2110835053934 0.00258187430495393 0.207220644343352
AT2G15820_at 5.29341159237701 5.76654330280917 5.25568414631297 5.25699131748597 6.18367108598287 5.58627307381067 6.00233593753068 6.52683139374094 6.78546707713401 6.51197133175886 7.27748558628068 6.93759196390196 6.58683787721374 6.9573731913345 6.77043545814402 6.96897486022273 6.88628871577933 7.10424028255788 6.51869227942856 0.231299561160251 0.220045657230369 0.227775141769439 0.220402076973116 0.216294018641290 0.228373839923216 0.232385580476997 0.218246881173117 0.226429354336339 0.227883944002551 0.222102354757708 0.222093261434225 0.230710583284776 0.224970638007214 0.222289699264730 0.216336636510684 0.224441894990102 0.218289333557459 0.219939691476771 2 2 - 6895909 6896357 6896179 6895622 6897495 - gene protein_coding_gene FALSE TRUE AT2G15820.1 pentatricopeptide (PPR) repeat-containing protein similar to pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana] (TAIR:AT5G61990.1); similar to pentatricopeptide (PPR) repeat-containing protein-like [Oryza sativa (japonica cultivar-group)] (GB:BAD07548.1); contains InterPro domain Pentatricopeptide repeat; (InterPro:IPR002885); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990); contains InterPro domain LAGLIDADG DNA endonuclease; (InterPro:IPR004860) 0.00207547255294149 0.0160200820615471 0.987592408996893 1 0.771563127055861 12.5047329252745 0.00207547255294149 0.16009522488115
ATCG00750_at 12.4547041771786 11.6270523693921 11.8823110748132 11.163032042087 12.6499556793359 11.3367742093777 13.2939911346702 11.7665609511671 12.7211464952313 13.5040479325597 13.902322789284 13.9179897424093 13.5208120031883 13.7692298937969 13.7927804416661 13.8835303886091 13.4872563798208 13.1340399966255 13.1952373265164 0.0831793221691566 0.081572597003051 0.0814431774038333 0.0895543684004353 0.08224199071448 0.0861513990588104 0.0836776355685793 0.0846018920879633 0.0887065872270523 0.0814431774038333 0.0832187282838946 0.0814431774038333 0.0817324752180178 0.0869325963874655 0.0842123017636257 0.0814431774038333 0.0862850589553303 0.0814431774038333 0.0814431774038333 C C - 78978 79274 79108.091 78960 79376 - gene protein_coding_gene FALSE TRUE ATCG00750.1 30S chloroplast ribosomal protein S11 Identical to Chloroplast 30S ribosomal protein S11 (rps11) [Arabidopsis Thaliana] (GB:P56802); similar to 40S ribosomal protein S14 (RPS14C) [Arabidopsis thaliana] (TAIR:AT3G52580.1); similar to ribosomal protein S11 [Vitis vinifera] (GB:YP_567110.1); similar to ribosomal protein S11 [Morus indica] (GB:YP_762294.1); contains InterPro domain Ribosomal protein S11; (InterPro:IPR001971) 0.00414618981199455 0.0146962113951357 0.988617663600238 1 0.771541786580803 25.4298672660164 0.00414618981199455 0.396890161699407
AT3G24080_at 5.4113293735067 5.87262687826277 5.9148006829903 5.73465386202687 5.83795420142292 6.0578004670369 6.14297309325354 5.8455725095224 6.33655553214692 6.2808640695783 6.48294353777805 6.83890942410807 6.05953384479193 6.21119234925342 6.75102684883958 6.46463180888664 6.17663909575515 5.75780938191762 6.62398956486022 0.203196827540496 0.196400607588162 0.199248082975553 0.204980416652921 0.193574659476004 0.200352446700296 0.19189576593556 0.203789676141918 0.195780881600668 0.206260334289106 0.190806368151726 0.197450174433493 0.198022089859199 0.190651495708639 0.198525535291862 0.190738917447622 0.192809309443151 0.202692649770746 0.193574582159791 3 3 - 8695202 8695636 8695405.182 8694968 8697131 - gene protein_coding_gene FALSE TRUE AT3G24080.1 KRR1 family protein similar to unknown protein [Arabidopsis thaliana] (TAIR:AT3G28770.1); similar to Os05g0490000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001055896.1); similar to Hypothetical protein CBG00558 [Caenorhabditis briggsae] (GB:CAE57579.1); contains InterPro domain Krr1; (InterPro:IPR007851) -0.00139521468963588 -0.0139334733895695 0.989208366498472 1 0.771530326613333 12.2305333044752 -0.00139521468963588 0.106962307858313
AT2G38170_at 12.5495777531924 12.7204477858075 13.0959466027138 13.0373129238361 13.3044043912913 12.9518431593224 13.4484783685027 13.4444399179673 13.3556430557246 13.2710172383091 13.187261600654 12.9225393604293 13.4176699307631 13.1682058045750 12.8432071156634 13.0377905638176 12.9910670018247 13.1125006683956 12.8051751798077 0.0750170218156706 0.0711388362269546 0.0721736494599126 0.0727949065249454 0.0711388362269546 0.0783055672118624 0.0734022489268961 0.0711388362269546 0.0782648061399335 0.0711388362269546 0.0718531385982762 0.0711388362269546 0.0716360898023178 0.0728772361711884 0.0768094430850412 0.0711541863531459 0.0839686435945715 0.07967683843318 0.0721194517786104 2 2 - 15996528 15998046 15997497.545 15996161 16000356 - gene protein_coding_gene FALSE TRUE AT2G38170.1|AT2G38170.2|AT2G38170.3 CAX1 (CATION EXCHANGER 1); calcium:hydrogen antiporter Encodes a high affinity vacuolar calcium antiporter. The residue His 338 is critical to Ca2+ transport activity. Disruption of CAX1 reduces manganese and zinc of shoot tissue and results in a decrease in the activity of vacuolar V-type proton ATPase. Identical to Vacuolar cation/proton exchanger 1 (Ca(2+)/H(+) exchanger 1) (Ca(2+)/H(+) antiporter CAX1) (Protein RARE COLD INDUCIBLE4) (CAX1) [Arabidopsis Thaliana] (GB:Q39253;GB:O80442;GB:Q56WC8); similar to CAX3 (cation exchanger 3), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G51860.1); similar to cax51 [Capsella bursa-pastoris] (GB:AAT70233.1); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837); contains InterPro domain Calcium/proton exchanger superfamily; (InterPro:IPR004798)|Identical to Vacuolar cation/proton exchanger 1 (Ca(2+)/H(+) exchanger 1) (Ca(2+)/H(+) antiporter CAX1) (Protein RARE COLD INDUCIBLE4) (CAX1) [Arabidopsis Thaliana] (GB:Q39253;GB:O80442;GB:Q56WC8); similar to CAX3 (cation exchanger 3), cation:cation antiporter [Arabidopsis thaliana] (TAIR:AT3G51860.1); similar to cax51 [Capsella bursa-pastoris] (GB:AAT70233.1); contains InterPro domain Calcium/proton exchanger; (InterPro:IPR004713); contains InterPro domain Sodium/calcium exchanger membrane region; (InterPro:IPR004837) -0.00113704462921005 -0.0137717657364073 0.989333602001404 1 0.771527975440086 26.1835440696854 -0.00113704462921005 0.068558965434572
AT4G17840_at 10.0287474490921 10.1241291447473 10.7132278383643 10.6323431811499 10.7258604345002 10.5164895485525 10.9156372281407 10.7889007842170 10.1911596617588 10.6715111400771 10.1473340316168 9.80774469222557 10.4393703534147 10.3741252185040 9.7596146996457 10.640684292802 10.5607061345873 10.2948319710871 10.4384831103190 0.103910664733750 0.102592781702936 0.101969166274674 0.101060620862499 0.102276317403002 0.107310935242037 0.104444321648882 0.104679945355827 0.115267021481911 0.100151831427870 0.105670201905552 0.105780193345322 0.101996960707482 0.101188596235524 0.108996055512235 0.098541957908853 0.100631667397778 0.103957562801348 0.104557293995000 4 4|0 -|/ 9918270 9919302 9918671.333 9918067 9920488 - gene protein_coding_gene FALSE TRUE AT4G17840.1 similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G35260.1); similar to hypothetical protein 23.t00040 [Brassica oleracea] (GB:ABD65626.1); similar to hypothetical protein 40.t00061 [Brassica oleracea] (GB:ABD65174.1) 0.000980026304794324 0.0130316040803963 0.989906828750758 1 0.771517564047972 20.8990516485723 0.000980026304794324 0.0475627417866837
AT2G06210_at 5.64946956307329 5.64640030559249 5.76183279624963 5.65582485753604 5.82207795989842 5.78250521215239 6.08263569778619 5.33896572198835 5.27204666561461 5.98212455292077 5.85875886004963 5.81015663734249 5.48488817216893 5.3293185257101 5.63813902388227 5.64536724243329 5.67333191799407 5.28961507267938 5.75600906337591 0.183573050369785 0.185756672495782 0.184658855023524 0.190514813668757 0.185149380837117 0.197331843819486 0.190939367228001 0.180734850146558 0.196397771049744 0.198452081024015 0.187816690518287 0.180734850146558 0.185173635971555 0.194099874465314 0.187683220273283 0.181312845814679 0.191189407971874 0.208081950547746 0.181866472779917 2 2|0 -|/ 2429139 2429662 2429412.8 2428900 2436684 - gene protein_coding_gene FALSE TRUE AT2G06210.1|AT2G06210.2 ELF8 (EARLY FLOWERING 8); binding|ELF8 (EARLY FLOWERING 8) Encodes a yeast CTR9 homolog that is involved in the control of flowering time by elevating FLC expression to a level that creates the vernalization-responsive, winter-annual habit. Yeast CTR9 is a component of a five-member PAF1 complex that associates with RNA pol II and is thought to regulate gene expression by recruiting SET1 (a histone 3 Lys 4 [H3-K4] methyl transferase) to the initially transcribed [5'] regions of target chromatin. Mutants display reduced H3-K4 methylation in both FLC and FLM chromatin. similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to Os07g0476200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059625.1); similar to putative TPR-containing nuclear phosphoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC16228.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-related region; (InterPro:IPR011595); contains InterPro domain Protein prenyltransferase; (InterPro:IPR008940); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105); contains InterPro domain Tetratricopeptide-like helical; (InterPro:IPR011990)|similar to cupin family protein [Arabidopsis thaliana] (TAIR:AT2G18540.1); similar to Os07g0476200 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059625.1); similar to putative TPR-containing nuclear phosphoprotein [Oryza sativa (japonica cultivar-group)] (GB:BAC16228.1); contains InterPro domain Tetratricopeptide region; (InterPro:IPR013026); contains InterPro domain Tetratricopeptide TPR_1; (InterPro:IPR001440); contains InterPro domain Tetratricopeptide-related region; (InterPro:IPR011595); contains InterPro domain Tetratricopeptide TPR_2; (InterPro:IPR013105) -0.00133538904443531 -0.0118736931658524 0.990803598520084 1 0.771502429793381 11.3480925270361 -0.00133538904443531 0.130177849046285
AT4G32260_at 12.3501223942054 12.4231267221003 12.3472814347051 12.2946817531879 12.3950887985640 12.4818876779330 12.7216993480929 12.8082072641128 12.9412446099069 12.7967693472266 13.0942109358215 13.1026124874185 12.9871189298221 13.0371735879576 12.9424114518575 13.1223126594586 12.9138054683951 13.1279708563147 12.8014818307175 0.0831416026457532 0.0862758517675491 0.0921545620390898 0.0920166079440889 0.0878604429003514 0.0903355445355914 0.0904602226710355 0.0877617421150821 0.0937781682978954 0.0848898951382963 0.0829772752404552 0.0864569080827205 0.0884190562483224 0.0937602661222493 0.092014388185134 0.0833437607195503 0.0894511293130815 0.0909164058894476 0.0839635401362021 4 4 - 15573898 15574430 15574254.455 15573642 15574743 - gene protein_coding_gene FALSE TRUE AT4G32260.1 ATP synthase family similar to H+-transporting two-sector ATPase, B/B subunit [Medicago truncatula] (GB:ABE81773.1); contains InterPro domain ATPase, F0 complex, subunit B/B' (InterPro:IPR002146) -0.000800282425009513 -0.0114233674363032 0.991152367061801 1 0.771496923959184 25.4214872456532 -0.000800282425009513 0.0263100141779389
AT3G01150_at 7.42482556664849 7.33595348934692 6.75774623868455 6.83413304327327 7.340462236222 6.97890269102873 7.18174302774252 6.89643893322843 6.05352623168931 6.45283305560994 6.77049368889444 6.8173261027249 6.43886179742867 6.90723532183415 6.61981383716089 6.37568240670678 6.70221470947153 6.24041978215804 6.61889839806917 0.260978859768473 0.247665390801189 0.254749263831889 0.24944968588096 0.256705658751326 0.25866090914262 0.254541546474451 0.264286594775073 0.295631442727953 0.260321729971532 0.247665390801189 0.250138327682211 0.256570352199812 0.254822745725492 0.266980362630382 0.249391599385754 0.278479458323366 0.253592303696954 0.255571828264572 3 3|0 +|/ 53314 54325 53953.125 51590 54513 + gene protein_coding_gene FALSE TRUE AT3G01150.1 PTB (POLYPYRIMIDINE TRACT-BINDING); RNA binding polypyrimidine tract-binding protein homolog (PTB) mRNA, Identical to Polypyrimidine tract-binding protein homolog 1 (PTB) [Arabidopsis Thaliana] (GB:Q9MAC5;GB:O82472); similar to polypyrimidine tract-binding protein, putative / heterogeneous nuclear ribonucleoprotein, putative [Arabidopsis thaliana] (TAIR:AT5G53180.1); similar to polypyrimidine tract-binding protein-like [Solanum tuberosum] (GB:ABB55397.1); similar to polypyrimidine tract-binding-like [Solanum tuberosum] (GB:ABB02630.1); contains InterPro domain Nucleotide-binding, alpha-beta plait; (InterPro:IPR012677); contains InterPro domain RNA-binding region RNP-1 (RNA recognition motif); (InterPro:IPR000504) 0.00099542936758179 0.0112713902334185 0.991270070914256 1 0.771495113871481 13.5858215787320 0.00099542936758179 0.0822432018581092
AT2G40270_at 10.450855142083 10.6820468513727 10.7678417058500 10.8151414645273 10.3837072799172 10.0619711218375 10.1223834512112 10.1954687992500 10.5424741223208 9.97502283379019 10.1848108486054 9.99595866582594 10.1359028057062 10.2158790921314 9.6568448552111 10.1435472564441 9.84995591529153 10.0848827283672 10.0219181320548 0.0960320169239039 0.094283040235214 0.095975570401013 0.0946447986272095 0.094283040235214 0.105980107102923 0.094283040235214 0.0958094689980758 0.107042976709490 0.095996374391321 0.101159942056466 0.0978768802720777 0.0960940809491273 0.0988304571433952 0.0998592164376077 0.0965811799852796 0.108865395099595 0.101005177964398 0.0949612149629928 2 2 - 16829247 16829730 16829481.182 16829012 16831584 - gene protein_coding_gene FALSE TRUE AT2G40270.1|AT2G40270.2 protein kinase family protein similar to protein kinase family protein [Arabidopsis thaliana] (TAIR:AT3G56050.2); similar to ser-thr protein kinase [Gossypium hirsutum] (GB:AAO59488.1); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain Tyrosine protein kinase; (InterPro:IPR001245) -0.000927713193464852 -0.0111481706445770 0.991365502631892 1 0.771493664089662 20.5415658771743 -0.000927713193464852 0.0701976138636258
ATCG00170_at 8.69014660627413 9.51968438150868 8.97531374811676 9.17616502338278 8.95387470441802 8.10668404132553 9.3832577353422 9.41114529273374 10.4822126741658 10.9816666694354 11.3414583796818 11.8949795481335 11.0813264269728 11.0625286339443 11.1399471837557 11.2939268978189 10.5152446372569 10.0632724046871 10.3289954850518 0.194195783394948 0.181369764499725 0.198416995026839 0.191378718843682 0.192878587157929 0.217473244095954 0.192038815737564 0.187343763800933 0.195437514986468 0.184975120094002 0.186450753993537 0.192434428421816 0.183400162936668 0.200022770837277 0.187986512561247 0.185798616224629 0.187556953696187 0.18881307182996 0.181369764499725 C C - 16069 16439 16270.091 15938 20068 - gene protein_coding_gene FALSE TRUE ATCG00170.1 RNA polymerase beta' subunit-2 Identical to DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP) (Plastid- encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (rpoC2) [Arabidopsis Thaliana] (GB:P56764); similar to NRPA1 (nuclear RNA polymerase A 1), DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana] (TAIR:AT3G57660.1); similar to RNA polymerase beta' subunit [Gossypium hirsutum] (GB:YP_538925.1); similar to RNA polymerase beta'' subunit [Gossypium barbadense] (GB:BAF41237.1); similar to DNA-directed RNA polymerase beta'' chain (PEP) (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (GB:Q9THV5); contains InterPro domain DNA-directed RNA polymerase, subunit beta' (InterPro:IPR012756); contains InterPro domain RNA polymerase Rpb1, domain 5; (InterPro:IPR007081); contains InterPro domain RNA polymerase Rpb1, domain 3; (InterPro:IPR007066); contains InterPro domain RNA polymerase Rpb1, domain 4; (InterPro:IPR007083) 0.00170572324655849 0.0107417605614861 0.99168026215741 1 0.771488995292753 19.8503891700956 0.00170572324655849 0.208168568664557
AT2G17790_at 7.35462722689502 7.50069234648478 7.6059645105608 7.24069154967736 7.17338558341603 6.58755940928511 6.88796918533419 6.37218904120212 6.32531889420671 6.49300466450509 6.41572853354433 6.39860963310552 6.14338679511946 5.98942090865375 6.06217008200686 5.88693289582587 6.54342887875303 6.54580993485641 6.30315482388207 0.234637397440394 0.229142796103649 0.243822665126913 0.237437949238143 0.229142796103649 0.252146749866231 0.234839148502195 0.232077569505434 0.246327983482253 0.239575150494293 0.24044250519448 0.230424864962235 0.234037296016185 0.237230001637474 0.231279470945750 0.231355943371820 0.241326563281630 0.250033933484825 0.234577398426603 2 2|0 +|/ 7745511 7746334 7745986.444 7740717 7746755 + gene protein_coding_gene FALSE TRUE AT2G17790.1 similar to vacuolar protein sorting-associated protein 35 family protein / VPS35 family protein [Arabidopsis thaliana] (TAIR:AT3G51310.1); similar to unknown protein [Arabidopsis thaliana] (TAIR:AT1G75850.1); similar to vacuolar protein sorting 35 [Gallus gallus] (GB:NP_001005842.1); similar to unnamed protein product [Tetraodon nigroviridis] (GB:CAF93242.1); similar to novel protein simlar to human and mouse vacuolar protein sorting 35 (yeast) (VPS35) [Danio rerio] (GB:CAE49237.1); contains InterPro domain Vacuolar protein sorting-associated protein 35; (InterPro:IPR005378) -0.00130467827117275 -0.010488124692337 0.99187670074826 1 0.771486169405556 13.4013908992391 -0.00130467827117275 0.151260153005022
AT3G20920_at 7.6085412205855 7.41817742861899 7.33544094921901 7.16156846722778 7.505994912856 6.9448167080252 6.9355196001908 7.22056610012016 6.97191007160578 6.91162297420979 6.67532383456357 7.28683603496678 6.93972808904577 6.73167586364237 6.99850305459325 6.423253466772 6.5381231061741 6.59842468230507 6.25556598278769 0.195297017493366 0.191233315207352 0.197052571360230 0.191540407734781 0.199228830696636 0.195612929924216 0.194277019143522 0.192090236384688 0.199562645041324 0.18401575810056 0.18401575810056 0.184641728687187 0.186961569383422 0.18401575810056 0.184681345147857 0.202887134885263 0.20124354948195 0.191052477288159 0.190239835559170 3 3|0 -|/ 7328886 7329626 7329324.6 7328582 7330757 - gene protein_coding_gene FALSE TRUE AT3G20920.1|AT3G20920.2 translocation protein-related|protein transporter similar to Os02g0435000 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046732.1); similar to Membrane component of ER protein translocation complex (ISS) [Ostreococcus tauri] (GB:CAL53527.1); contains InterPro domain Translocation protein Sec62; (InterPro:IPR004728) 0.00110233946328964 0.0104270439057309 0.991924007329856 1 0.771485498961294 14.0098364363766 0.00110233946328964 0.117708024263880
AT4G34730_at 6.61840840632818 6.6295317456598 6.50204183452544 6.11297436261844 6.88190560408655 6.58604836017945 8.11774317824434 7.62279237883116 6.40101313081714 6.73746066713323 7.59459696516324 7.52013486398848 7.30159504531622 7.26293263186207 7.51247523691019 7.46761097042984 6.86443090551737 7.04542112733535 6.6525493878412 0.175953133639476 0.185462300195554 0.182168618093213 0.181191989048420 0.180972745726498 0.175066837920260 0.190365358874649 0.186700721528845 0.185796997398465 0.173504625929089 0.174700514654509 0.174293329855037 0.181750066828423 0.189122352891533 0.177654612207579 0.173245017957368 0.191894765106129 0.175583184417055 0.183404232872456 4 4 - 16570035 16571120 16570699 16569401 16573685 - gene protein_coding_gene FALSE TRUE AT4G34730.1 ribosome-binding factor A family protein Identical to Probable ribosome-binding factor A, chloroplast precursor [Arabidopsis Thaliana] (GB:O65693;GB:Q8H0V9); similar to Os06g0137600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001056734.1); similar to COG0858: Ribosome-binding factor A [Nostoc punctiforme PCC 73102] (GB:ZP_00109051.1); contains InterPro domain Ribosome-binding factor A; (InterPro:IPR000238) -0.00111719859762394 -0.0104264383621824 0.991924476318683 1 0.771485492334238 13.8430094572654 -0.00111719859762394 0.120394942893469
AFFX-r2-Bs-thr-3_s_at 5.54049396544622 5.96495003451824 7.17227299815175 5.96962590570318 7.68290474448445 5.99568224059286 8.01676762782903 5.12276680306839 7.98185484623491 8.93279592299708 8.02045289405295 8.4498319764072 7.96778864398463 7.96355093701262 7.74725246632984 8.33206110328292 8.13735657626283 7.79040744038371 8.84333312543946 0.183891127713464 0.178840964723208 0.182670325447001 0.198311635728632 0.184962136814134 0.196242688834957 0.183794711040688 0.197958077568242 0.193570317216894 0.181608508336856 0.18355264786404 0.178840964723208 0.182731374307803 0.184678852099578 0.183943829527705 0.180077516399243 0.182386953524804 0.191281335268698 0.181775807085927 NA NA NA NA NA FALSE FALSE 0.00448499383751422 0.0103486659048742 0.991984710515219 1 0.771484644392915 14.7517242331101 0.00448499383751422 0.620310659424968
AT1G27300_at 6.70563100288884 7.32145168288879 6.4552035406213 6.99499256026353 7.86225210922923 7.9335602652757 5.70751634472103 5.9761369024594 6.06777537357568 5.92437178272361 5.61953826708476 4.35843559240766 5.47639400777078 5.3595228208301 3.98476644254128 5.19858355627356 5.47507630697009 5.08689812534678 5.86161067103578 0.234574499209508 0.237100409433823 0.245552194501919 0.238335006570909 0.236018790518415 0.240712978154537 0.236947222283481 0.235785449771728 0.239129984319663 0.233688301829247 0.234107870439273 0.238599979284641 0.235644900004498 0.238875408996386 0.243711498423911 0.231156324515998 0.232956195536491 0.236251899369890 0.231183381918925 1 1|0 +|/ 9483388 9484135 9483951.222 9483144 9484355 + gene protein_coding_gene FALSE TRUE AT1G27300.1 similar to Os02g0509600 [Oryza sativa (japonica cultivar-group)] (GB:NP_001046928.1) 0.00123370819968349 0.00999216648566415 0.992260817383013 1 0.771480838780474 12.3801703005509 0.00123370819968349 0.149654682877958
AT1G19740_at 9.89388321815722 10.1639127337545 9.94231392212298 10.1687811374889 9.69403027754758 10.0644246517360 10.1503939448190 10.5323698562485 9.40602719482493 9.74441266978895 9.9861610033212 9.54515908355327 9.8454732866222 9.8648359793438 9.5567561758659 9.8834308246886 9.7770639108274 9.91714680123129 9.5933564597209 0.116075165836475 0.115746651611177 0.115296744963955 0.119844442775236 0.111022872730823 0.119021396620144 0.11969018693399 0.118242560017376 0.135860730239861 0.113781374324248 0.112755330228874 0.115365352888507 0.113654418632462 0.115902226399595 0.118048624541755 0.117498428190035 0.115571365308479 0.121359280936973 0.113439951610194 1 1 + 6824648 6825174 6824825.7 6824313 6825450 + gene protein_coding_gene FALSE TRUE AT1G19740.1 ATP-dependent protease La (LON) domain-containing protein similar to ATP-dependent protease La (LON) domain-containing protein [Arabidopsis thaliana] (TAIR:AT1G75460.1); similar to Os07g0509700 [Oryza sativa (japonica cultivar-group)] (GB:NP_001059749.1); similar to hypothetical protein all4335 [Nostoc sp. PCC 7120] (GB:NP_488375.1); similar to COG2802: Uncharacterized protein, similar to the N-terminal domain of Lon protease [Nostoc punctiforme PCC 73102] (GB:ZP_00107090.1); contains InterPro domain Peptidase S16, lon N-terminal; (InterPro:IPR003111) -0.00100724964207433 -0.0098829446137645 0.992345409352746 1 0.771479699537262 19.7653981300477 -0.00100724964207433 0.110443715340212
AT1G55350_at 6.8818987110189 6.318213966105 6.44194435822354 6.55338400847258 7.08529509794841 6.36550896506337 7.2444285135839 6.83306620724801 5.96546959121346 6.09137578244 6.14352629965503 6.52019164790146 6.20957034570445 6.51571041436725 6.60208618576036 6.0919172339463 6.21956783327415 5.68541738206153 6.05780304107697 0.237336351300593 0.226617362306189 0.238171656595196 0.225536178378456 0.227324159266465 0.246184206444455 0.222707084346864 0.228719724712661 0.230980757203098 0.239617763053229 0.224136040880155 0.222815733059219 0.222707084346864 0.222707084346864 0.226618757692182 0.222707084346864 0.24669232989354 0.23715041170886 0.232487867402948 1 0|1 /|- 20658187 20659111 20658507 20657486 20668656 - gene protein_coding_gene FALSE TRUE AT1G55350.1|AT1G55350.2|AT1G55350.3|AT1G55350.4 DEK1 (DEFECTIVE KERNEL 1); calpain/ cysteine-type endopeptidase Similar to maize DEK1, a gene encoding a membrane protein of the calpain gene superfamily required for aleurone cell development in the endosperm of maize grains. A key component of the embryonic L1 cell-layer specification pathway. similar to Dek1-calpain-like protein [Oryza sativa] (GB:AAL38190.1); similar to calpain-like protein [Zea mays] (GB:AAL38187.1); similar to phytocalpain [Nicotiana benthamiana] (GB:AAQ55288.2); contains InterPro domain Peptidase, cysteine peptidase active site; (InterPro:IPR000169); contains InterPro domain Concanavalin A-like lectin/glucanase, subgroup; (InterPro:IPR013320); contains InterPro domain Peptidase C2, calpain; (InterPro:IPR001300) 0.00120676876418302 0.00873424620922942 0.993235078347753 1 0.771468476301557 12.8588247564966 0.00120676876418302 0.17455977800893
AT1G30330_at 5.92105288356207 5.7538449199655 4.31212731208912 4.44953549353573 5.74780976995027 5.36293205724927 4.95481292633374 4.32178886865102 5.56315632664295 6.05970233889038 6.66928786493706 6.23587975473729 5.99558709416013 6.22900315271354 5.7435803347506 6.28216582800635 5.89146203742757 6.23871680217935 6.04401914028763 0.22456521682535 0.22194068216542 0.22194068216542 0.227599233044514 0.225472692878165 0.233287204507018 0.225591009085556 0.237437359469195 0.234500221532352 0.237204308713279 0.23149989348573 0.222317228206123 0.226738864501269 0.235760497022119 0.223375998582025 0.227666680982379 0.228774268888670 0.233004158714858 0.223039779356124 1 1|0 -|/ 10686117 10686824 10686484.7 10685804 10690781 - gene protein_coding_gene FALSE TRUE AT1G30330.1|AT1G30330.2 ARF6 (AUXIN RESPONSE FACTOR 6); transcription factor|ARF6 (AUXIN RESPONSE FACTOR 6) Encodes a member of the auxin response factor family. Mediates auxin response via expression of auxin regulated genes. Acts redundantly with ARF8 to control stamen elongation and flower maturation. Expression of ARF6 is controlled by miR167. Identical to Auxin response factor 6 (ARF6) [Arabidopsis Thaliana] (GB:Q9ZTX8); similar to ARF8 (AUXIN RESPONSE FACTOR 8), transcription factor [Arabidopsis thaliana] (TAIR:AT5G37020.1); similar to auxin response factor 3 [Cucumis sativus] (GB:BAD19063.1); similar to Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation [Medicago truncatula] (GB:ABE93318.1); similar to transcriptional factor B3 family protein [Musa acuminata] (GB:ABF69979.1); contains InterPro domain Transcriptional factor B3; (InterPro:IPR003340); contains InterPro domain Aux/IAA_ARF_dimerisation; (InterPro:IPR011525); contains InterPro domain Auxin response factor; (InterPro:IPR010525) 0.000988674292509817 0.00864663627403173 0.993302932827806 1 0.771467677159979 11.1278228425276 0.000988674292509817 0.133565224407878
AT4G11330_at 8.88019312006807 8.89540516194281 8.74661028194605 8.73251037309767 9.7388537591385 9.13393641433481 9.80852274284429 9.55247856671977 8.56923416480469 8.74669345982006 8.94884175588162 9.13357451428445 9.15007126136181 9.04805726078361 8.42800815170474 9.04864609432072 8.93181352963628 8.78305096008273 8.90160155595786 0.142607971334456 0.142607971334456 0.149885341975353 0.147472341686627 0.146898461147157 0.161255538758386 0.147394422875009 0.145273869933446 0.177285840853794 0.15141093632754 0.144124345621702 0.146110846990858 0.145107803024944 0.149172229647954 0.160280399729505 0.143830396555788 0.156205168674432 0.155615185681749 0.146709074970792 4 4 + 6893174 6893816 6893594.273 6892049 6894144 + gene protein_coding_gene FALSE TRUE AT4G11330.1 ATMPK5 (MAP KINASE 5); MAP kinase/ kinase MAP kinase Identical to Mitogen-activated protein kinase 5 (EC 2.7.11.24) (MAP kinase 5) (AtMPK5) (MPK5) [Arabidopsis Thaliana] (GB:Q39025;GB:Q67YV7;GB:Q9SUS8); similar to ATMPK4 (MAP KINASE 4), MAP kinase/ kinase [Arabidopsis thaliana] (TAIR:AT4G01370.1); similar to double HA-tagged mitogen activated protein kinase 5 [synthetic construct] (GB:ABG54332.1); contains InterPro domain Serine/threonine protein kinase; (InterPro:IPR002290); contains InterPro domain Protein kinase-like; (InterPro:IPR011009); contains InterPro domain Protein kinase; (InterPro:IPR000719); contains InterPro domain JNK MAP kinase; (InterPro:IPR008351); contains InterPro domain Serine/threonine protein kinase, active site; (InterPro:IPR008271) -0.000670321642510352 -0.00646867531697421 0.994989795137692 1 0.771450400225551 18.0226559697788 -0.000670321642510352 0.113731786773571
AFFX-r2-Bs-dap-M_at 7.5440094581742 8.26739395968738 8.65841596640713 8.0708532750457 9.64310779302144 7.72764191321155 9.61457528610485 8.29641781034808 9.26246693193502 9.95390708826385 9.92227684324327 10.0667803219983 9.24704678527155 9.7791618685456 9.33739422495666 9.91607696931667 9.32915590470643 9.29962717515446 9.89165503451754 0.185476098363668 0.181522900991710 0.179995604692886 0.188296962620096 0.175529558775475 0.182612439298383 0.173475204295063 0.18733058439122 0.188786273071159 0.170934155726778 0.171715740319984 0.175957006924772 0.177952524379849 0.185747453692237 0.187916772110297 0.177587785130264 0.183870229148779 0.180256563539071 0.172405360230428 NA NA NA NA NA FALSE FALSE 0.00195963420990797 0.00638909505632371 0.995051431760418 1 0.771449863229062 18.1352351143607 0.00195963420990797 0.433503270336103
AT3G50520_at 5.76363383104447 5.92428563367481 6.05727832427617 6.29547548541413 6.20267423298844 6.10734921791838 6.16628818223737 6.36923314421064 6.26459735163539 6.45687244455854 6.12569124374885 6.41669473493004 6.24226380833087 6.13197822200861 6.58131094631952 6.17718316355408 5.61087653298179 6.03736037147408 6.1071034602201 0.18064219465267 0.171248873919284 0.179059835343062 0.181210508348630 0.178485070248245 0.190907314735648 0.171398800202808 0.167456336992441 0.179273673682915 0.171593358936353 0.170286395100908 0.183876193870715 0.175065895985890 0.187883344860656 0.185808117503858 0.173685285360421 0.186144679100204 0.176089413145439 0.175200637181559 3 3|0 +|/ 18759558 18760345 18759971.444 18759004 18760552 + gene protein_coding_gene FALSE TRUE AT3G50520.1 phosphoglycerate/bisphosphoglycerate mutase family protein similar to phosphoglycerate/bisphosphoglycerate mutase family protein [Arabidopsis thaliana] (TAIR:AT5G04120.1); similar to phosphoglycerate mutase family protein [Oryza sativa (japonica cultivar-group)] (GB:ABA95748.1); contains InterPro domain Phosphoglycerate/bisphosphoglycerate mutase; (InterPro:IPR001345); contains InterPro domain Phosphoglycerate mutase; (InterPro:IPR013078) -0.000468545097703776 -0.00582388299648162 0.99548920163541 1 0.771446240518508 12.3315827381655 -0.000468545097703776 0.0630689656731803
AT1G52280_at 6.95646052257426 7.33848654541124 6.84586863140889 6.48542809311818 7.45129514387466 6.60274895620637 7.90030679857037 7.42374681480156 7.06146590320552 7.08009917785162 7.83052575337027 8.02131407004898 7.5444754140215 7.86711584861942 7.82471959574187 7.51614598443707 6.91710906483172 7.45408458351718 7.04411848372237 0.158432013778832 0.163201081431726 0.158837155087456 0.163384257362242 0.162760298436373 0.158077110690109 0.164903750299564 0.161787479659706 0.160330441449731 0.157375342343619 0.162236094979714 0.153329060613600 0.159838138542811 0.166151104844806 0.161558052396762 0.152758121656982 0.161723498577160 0.155093610705989 0.161236776239619 1 1|0 -|/ 19471855 19473073 19472299.222 19471638 19473255 - gene protein_coding_gene FALSE TRUE AT1G52280.1 AtRABG3d (Arabidopsis Rab GTPase homolog G3d); GTP binding similar to AtRABG3c/AtRab7D (Arabidopsis Rab GTPase homolog G3c), GTP binding [Arabidopsis thaliana] (TAIR:AT3G16100.1); similar to Ras-related protein Rab7 (GB:Q9XER8); contains InterPro domain Small GTP-binding protein domain; (InterPro:IPR005225); contains InterPro domain Ras small GTPase, Rab type; (InterPro:IPR003579); contains InterPro domain Sigma-54 factor, interaction region; (InterPro:IPR002078); contains InterPro domain Ras GTPase; (InterPro:IPR001806); contains InterPro domain Ras; (InterPro:IPR013753) 0.0008134017714998 0.00548134568300652 0.995754505539457 1 0.771444208216834 14.4674580937040 0.0008134017714998 0.191380096796902
AT3G44600_at 6.14569873297592 6.37566483457646 6.03010513137712 6.32612109032328 6.33352645219497 6.4204599951889 6.55989424997778 6.46644208333778 5.71773893991404 5.56729399118 5.74312608484307 6.18825240186693 5.83444028993402 5.68680609706507 6.09581552051442 6.00504024950931 6.01770935203407 5.32019644372613 5.97368649408873 0.2125582967388 0.207002996754643 0.207801057510173 0.209697789601674 0.202218863076041 0.199966883176508 0.202246402455222 0.199966883176508 0.206329850698006 0.216678590342409 0.202212270582672 0.20046399792906 0.207811578902471 0.218049802407935 0.210180932513277 0.199966883176508 0.205947859511971 0.223609101990523 0.206583305807342 3 3|0 -|/ 16176361 16177151 16176752.6 16175922 16180249 - gene protein_coding_gene FALSE TRUE AT3G44600.1 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein similar to peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative [Arabidopsis thaliana] (TAIR:AT2G36130.1); similar to putative cyclophilin (70.8 kD) (cyp-15) [Oryza sativa (japonica cultivar-group)] (GB:BAD09085.1); similar to putative cyclophilin (70.8 kD) (cyp-15) [Oryza sativa (japonica cultivar-group)] (GB:BAD09084.1); similar to peptidylprolyl isomerase domain and WD repeat containing 1 [Bos taurus] (GB:NP_001039696.1); contains InterPro domain Peptidyl-prolyl cis-trans isomerase, cyclophilin type; (InterPro:IPR002130); contains InterPro domain WD-40 repeat; (InterPro:IPR001680); contains InterPro domain WD40-like; (InterPro:IPR011046) -0.000427489035103923 -0.00517851303889573 0.995989057627646 1 0.77144251405354 12.1394039612428 -0.000427489035103923 0.0685262827487811
AT4G22190_at 8.86720339600031 9.22251074763441 8.933803802734 9.10540048905286 9.3261413895254 9.4381926536514 9.26271610963641 9.5376229577692 9.53791506539645 9.20809069903877 9.5631890484094 9.31944115448064 9.69057967519216 9.2802010564889 9.26176247994555 9.62024227554804 9.44698480264527 9.0309948472949 9.39633382072901 0.108343429987754 0.104203112457550 0.108430610216012 0.108035303400765 0.102976030840822 0.106661194454559 0.106677418686637 0.110882066373814 0.113150315458586 0.110741558349677 0.107602730519639 0.103822192943631 0.108725264366108 0.104125334346124 0.109589832988496 0.102976030840822 0.108204117978933 0.115257486905347 0.106552475855103 4 4 - 11742129 11742586 11742370.364 11741867 11743330 - gene protein_coding_gene FALSE TRUE AT4G22190.1 similar to conserved hypothetical protein [Medicago truncatula] (GB:ABD32666.1) -0.00036708161999055 -0.00408989697927329 0.9968322234898 1 0.771437218864471 18.6029260828615 -0.00036708161999055 0.0854508108835042
AT1G65020_at 5.59541367144982 5.91825921505255 5.7033956670985 5.77265573741904 6.17680034762864 5.65592055837256 5.63928397690547 5.96217114742068 5.2435331576763 4.9313320157408 4.90423742985162 5.27633245717721 5.09017940372385 5.35839583928429 4.90324109193619 5.18584256602834 4.98137942494403 5.12616772983511 5.27805018606509 0.200953174011576 0.197281484517962 0.202807046986804 0.213936926036751 0.199215507088289 0.203476963607374 0.195780041644682 0.195780041644682 0.220495747694129 0.198211852097425 0.207946291751265 0.197185875607841 0.198271246638317 0.211939864898350 0.207586124559503 0.204879270015509 0.205943735847114 0.203865166566829 0.199097005166354 1 1|0 -|/ 24158490 24159773 24159034.714 24158007 24160268 - gene protein_coding_gene FALSE TRUE AT1G65020.1 similar to NERD [Medicago truncatula] (GB:ABE94711.1); contains InterPro domain NERD; (InterPro:IPR011528) 0.000330640638031565 0.0030846217399431 0.997610843137368 1 0.77143343374379 10.9300844298392 0.000330640638031565 0.120468680492769
AT3G54280_at 6.7472527220348 7.20608222711733 7.17734669296362 7.25449093476564 7.6039990693287 6.60432715779874 8.42141201830543 7.70467095035943 6.76834910883307 7.28184258229713 7.17283656120616 7.53992166014073 7.14835818966911 7.9585185246239 6.77956007074542 8.0339810386469 7.85554431215796 7.61400578992388 7.41154383303556 0.204819294363580 0.198793065174987 0.212183053685948 0.206001976851834 0.200638253863236 0.220471696339809 0.207135515775948 0.206374964563938 0.225797952275496 0.202771261914414 0.198622854192588 0.204685183125462 0.219634554086877 0.203793213909633 0.218578094051308 0.208273816802420 0.199842215939567 0.207384969356269 0.198622854192588 3 3|0 +|/ 20113928 20114746 20114259.875 20103339 20115133 + gene protein_coding_gene FALSE TRUE AT3G54280.1 ATP binding / DNA binding / helicase similar to homeotic gene regulator, putative [Arabidopsis thaliana] (TAIR:AT5G19310.1); similar to PREDICTED: similar to TATA-binding protein-associated factor 172 (ATP-dependent helicase BTAF1) (TBP-associated factor 172) (TAF-172) (TAF(II)170) (B-TFIID transcription factor-associated 170 kDa subunit) isoform 6 [Mus musculus] (GB:XP_922377.1); similar to putative SNF2 domain-containing protein [Oryza sativa (japonica cultivar-group)] (GB:BAD25208.1); similar to PREDICTED: BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, 170kDa (Mot1 homolog, S. cerevisiae) isoform 1 [Mus musculus] (GB:XP_129248.7); contains InterPro domain Armadillo-like helical; (InterPro:IPR011989); contains InterPro domain DEAD/DEAH box helicase, N-terminal; (InterPro:IPR011545); contains InterPro domain SNF2-related; (InterPro:IPR000330); contains InterPro domain Helicase, C-terminal; (InterPro:IPR001650); contains InterPro domain HEAT; (InterPro:IPR000357) -0.000442294369700891 -0.00258632884618650 0.997996788880859 1 0.771431950738147 14.6733240264731 -0.000442294369700891 0.227587440479261
AT2G45770_at 7.54957260245928 7.64726155296507 7.6214162457091 7.36712428682256 7.49528859527581 7.16911207314917 8.01784905568506 7.90649227949596 7.38926203102239 7.60432906498861 7.52333427681135 8.2367746472579 7.51643498483833 7.89194302687077 7.89471329841313 8.22571141640286 7.61312188761555 7.41866642600412 7.27582152588825 0.175540467722110 0.172471334282441 0.181547393242674 0.181100707997990 0.172148076342785 0.181635099112925 0.171487853115833 0.171565826652812 0.187600338971582 0.167397483254301 0.188066609140778 0.170512058977146 0.173727781783423 0.187278451926957 0.187896880561758 0.169039537766535 0.177496216680955 0.170493570684132 0.173519995510571 2 0|2 /|+ 18860048 18860423 18860232.25 18858292 18860783 + gene protein_coding_gene FALSE TRUE AT2G45770.1 CPFTSY (ferric reductase deficient 4); GTP binding chloroplast SRP receptor homolog, alpha subunit CPFTSY similar to FFC (FIFTY-FOUR CHLOROPLAST HOMOLOGUE), 7S RNA binding / GTP binding / mRNA binding [Arabidopsis thaliana] (TAIR:AT5G03940.1); similar to putative chloroplast SRP receptor cpFtsY precursor [Oryza sativa (japonica cultivar-group)] (GB:BAD88155.1); contains InterPro domain GTP-binding signal recognition particle SRP54, G-domain; (InterPro:IPR000897); contains InterPro domain AAA ATPase; (InterPro:IPR003593); contains InterPro domain Cell division transporter substrate-binding protein FtsY; (InterPro:IPR004390) -5.43087592541625e-05 -0.000634296686985823 0.999508712255204 1 0.771428651378202 15.2033771045252 -5.43087592541625e-05 0.0760257691003668
AT1G72750_at 6.47405623989707 6.7358560796009 6.56120429345427 6.85222942326457 6.68095192924455 6.59644659984079 6.90183726458804 7.17356106907536 6.3239119680474 5.76413088955929 5.72174496951038 6.1885204968808 6.66727540211692 6.26959552984046 5.76183898547946 6.41880422380975 6.51646024045503 6.31805743785937 6.16413317093648 0.186284392549715 0.197534913283502 0.198471995572899 0.193547296614997 0.198558452030771 0.192870131806172 0.193676904442057 0.195052984885432 0.197806437976222 0.191028464411109 0.188006725477745 0.188469852578526 0.182825798876247 0.201687254270660 0.191797372841841 0.181425306778081 0.185347778455304 0.185084173731441 0.183003081064549 1 1 + 27387253 27387744 27387494.273 27387027 27388186 + gene protein_coding_gene FALSE TRUE AT1G72750.1 ATTIM23-2 (Arabidopsis thaliana translocase inner membrane subunit 23-2); protein translocase similar to ATTIM23-1 (TRANSLOCASE OF INNER MITOCHONDRIAL MEMBRANE 23), protein translocase [Arabidopsis thaliana] (TAIR:AT1G17530.1); similar to Mitochondrial import inner membrane translocase, subunit Tim23 [Medicago truncatula] (GB:ABE80471.1); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim17/22; (InterPro:IPR003397); contains InterPro domain Mitochondrial import inner membrane translocase, subunit Tim23; (InterPro:IPR005681) 5.44413618333017e-05 0.000611792818921643 0.99952614238456 1 0.771428636661548 12.9054407808332 5.44413618333017e-05 0.083750190096749
AT4G31700_at 9.10187914703618 9.4414729466269 8.93906598642963 9.10051012054054 8.8521905881389 8.70219398492235 9.5024034112597 9.15732693709675 8.61273682628451 8.64370805777051 9.06723900937508 9.76031371041315 8.34810890745179 8.70850300071882 9.89362739706415 8.36833235246382 8.54097129264556 8.88613671305254 8.37686272796915 0.150341044965093 0.153008293149022 0.149695294397123 0.152185114271239 0.147893207981000 0.154706608909247 0.160786001194019 0.149172912892629 0.154417907812211 0.148116754018450 0.142328651421896 0.149581572204427 0.149625452138383 0.144601634410511 0.154363422006063 0.149194862659201 0.160305533617357 0.150622701246676 0.153350073110505 4 4|0 -|/ 15346398 15347050 15346664.6 15346078 15347733 - gene protein_coding_gene FALSE TRUE AT4G31700.1|AT4G31700.2 RPS6 (RIBOSOMAL PROTEIN S6); structural constituent of ribosome|RPS6 (RIBOSOMAL PROTEIN S6) Encodes a putative ribosomal protein S6 (rps6). Identical to 40S ribosomal protein S6-1 (RPS6A) [Arabidopsis Thaliana] (GB:O48549;GB:O81777); similar to EMB3010 (EMBRYO DEFECTIVE 3010), structural constituent of ribosome [Arabidopsis thaliana] (TAIR:AT5G10360.1); similar to 117M18_18 [Brassica rapa] (GB:AAZ66937.1); contains InterPro domain Ribosomal protein S6e; (InterPro:IPR001377) -3.11316368188930e-05 -0.000335428754765661 0.999740197216033 1 0.771428499277652 17.8451753495428 -3.11316368188930e-05 0.0920554701194123